<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 00:28:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315567" ref_strand="+" ref_description="SGN-U315567        Tomato 200607 #1 [33 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxymethylbilane synthase / porphobilinogen deaminase, chloroplast / pre-uroporphyrinogen synthase, identical to SP:Q43316 | chr5:2663191-2665793 REVERSE | Aliases: F8L15.10, F8L15_10(evalue: 4e-150, score=528) genbank/nr: porphobilinogen(evalue: 5e-153, score=544)">
      <seq>cggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7549" stop="11424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7849" g_stop="8047" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9464" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="605" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="812" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="990" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10660" g_stop="11123" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="991" r_stop="1454" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1455" polyA_stop="1472"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U315567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1454</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7849" e_stop="8047"/>
          <exon e_start="9059" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="11123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335212" ref_strand="+" ref_description="SGN-U335212        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxymethylbilane synthase / porphobilinogen deaminase, chloroplast / pre-uroporphyrinogen synthase, identical to SP:Q43316 | chr5:2663191-2665793 REVERSE | Aliases: F8L15.10, F8L15_10(evalue: 2e-66, score=249) genbank/nr: porphobilinogen(evalue: 1e-64, score=249)">
      <seq>gagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="7557" stop="11027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7857" g_stop="8047" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="9339" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="472" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9340" i_stop="10117" i_length="778">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10118" g_stop="10282" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="637" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10393" g_stop="10570" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="815" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10660" g_stop="10727" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="883" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U335212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7857" e_stop="8047"/>
          <exon e_start="9059" e_stop="9339"/>
          <exon e_start="10118" e_stop="10282"/>
          <exon e_start="10393" e_stop="10570"/>
          <exon e_start="10660" e_stop="10727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</genome_strand>
        <mrna_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315566" ref_strand="+" ref_description="SGN-U315566        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxymethylbilane synthase / porphobilinogen deaminase, chloroplast / pre-uroporphyrinogen synthase, identical to SP:Q43316 | chr5:2663191-2665793 REVERSE | Aliases: F8L15.10, F8L15_10(evalue: 3e-78, score=288) genbank/nr: gi|15241573|ref|NP_196445.1| hydroxymethylbilane synthase (porphobilinogen deaminase, chloroplast) (pre-uroporphyrinogen synthase) [Arabidopsis thaliana] gi|2495179|sp|Q43316|HEM3_ARATH Porphobilinogen deaminase, chloroplast precursor (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) gi|1084340|pir||S50762 hydroxymethylbilane synthase (EC 4.3.1.8) precursor - Arabidopsis thaliana gi|313150|emb|CAA51941.1| hydroxymethylbilane synthase [Arabidopsis thaliana] gi|313838|emb|CAA52061.1| hydroxymethylbilane synthase [Arabidopsis thaliana] gi|10178270|emb|CAC08328.1| hydroxymethylbilane synthase [Arabidopsis thaliana] gi|16930521|gb|AAL31946.1| AT5g08280/F8L15_10 [Arabidopsis thaliana] gi|17979402|gb|AAL49926.1| putative hydroxymethylbilane synthase [Arabidopsis thaliana] gi|21689853|gb|AAM67570.1| putative hydroxymethylbilane synthase [Arabidopsis thaliana](evalue: 2e-76, score=288)">
      <seq>attgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgatactttgtatgttagtgtagcattttcacttcaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="8955" stop="11264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9255" g_stop="9464" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10076" g_stop="10282" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="417" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10393" g_stop="10418" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="443" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10419" i_stop="10659" i_length="241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10660" g_stop="10964" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="746" r_length="303" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U315566" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9255" e_stop="9464"/>
          <exon e_start="10076" e_stop="10282"/>
          <exon e_start="10393" e_stop="10418"/>
          <exon e_start="10660" e_stop="10964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGG</genome_strand>
        <mrna_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCA.................................................................................................................................................................................................................................................TGA-AGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTG-ATACTTTGTATGTTAGTGTAGCATTTTCACTTCAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326420" ref_strand="+" ref_description="SGN-U326420        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF02410: Domain of unknown function DUF143 | chr3:4128414-4129963 FORWARD | Aliases: MGH6.4(evalue: 1e-68, score=257) genbank/nr: gi|18399794|ref|NP_566439.1| expressed protein [Arabidopsis thaliana] gi|15795122|dbj|BAB02500.1| IojAP protein-like [Arabidopsis thaliana] gi|22655076|gb|AAM98129.1| expressed protein [Arabidopsis thaliana] gi|27311971|gb|AAO00951.1| expressed protein [Arabidopsis thaliana](evalue: 8e-67, score=257)">
      <seq>gcaactgagtttccccatacaatcctctcttgtgcagtatcttctaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatgtcgttgttcatctatttcttcctccgcagcgtgagtactacaacctggaagaattctatggcaatgcagcatccatcgaactaccatttgagaaccaacaacaattgcgaggacctactggttattgaagtcccaacagttatggcctcgtggtgattaacagaaagtgtagcaaattatgaggcaatcacagtgttcccccgattgctgacaaggaacgattaacatatctgggcaaactctgttgatccactggttgcgttatttttcttaaattagtagtaagataaagctctctactaagttgtctctgtagaagtattggttaagaaatagtttacaagcattctgaactaataaaggctcattgtcacgtttgatgaaagaacctaacatcctgcttctttttccttgatgtgagttgagtttaaatgaagaatgaggatttaaataaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="11390" stop="15692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11690" g_stop="11971" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11972" i_stop="12913" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12914" g_stop="13040" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="409" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13041" i_stop="13891" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13892" g_stop="14030" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="548" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14031" i_stop="14166" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14167" g_stop="14255" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="637" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14256" i_stop="14932" i_length="677">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14933" g_stop="15391" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="1095" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1096" polyA_stop="1111"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U326420" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1096</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11690" e_stop="11971"/>
          <exon e_start="12914" e_stop="13040"/>
          <exon e_start="13892" e_stop="14030"/>
          <exon e_start="14167" e_stop="14255"/>
          <exon e_start="14933" e_stop="15391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTGGTAAGTAATTCATGGTACTTTAATAGTCCTGCTATTACTTGTGTCATGGCTGAAGAATTTCACTGGATATGAATTTATTATTGCCCTTGTTCTTGATTCACCCCTATTTTTTAATTTCATATGTGGACAAGTGCTGTTAAGGGGCAATATCCTTCTGCACATTAGGATTAGAAGGGAGTAACTTTGTTGTTGACTAACGACTACTTACTGTAACTGTGTTGCTTCACATTGTCCAACATAACTTACCCAAACATAGTGCTTAACTGTTACAAGTTATCAAACCATCAAGCAACTTGCAAAAATCCGTTATTATTCAGTTGAGCAAGAAAAGGAGGTTTAAAGGTTCAAAGCACAGAGATCTCTGACCCAGCCAGAGAAGCATTAGTTTATATCGTGCCCTGCTTCATATGGGTAGTGCTTTTCAAAAATCATCCCATGCATAAGGTTAACATCTGGTTTCAACATGGACTAGCTATCCCAGGGTGGCCAAACATGTTATGGCCAGGGTCAGAAGAAATGTTACCTCCAAAGCTATAAGGACTAAACATGAGTGGTTTGTTTTGATAAGGCGATGCTATATTATGTGCTACTATTTGACCCTTGCAGCAACCATGTACTATGCCATGAAATGTTGTTCTTCTTGCTGATATGTCGCTCCATGCCTCTCTTAATTACAGGTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</genome_strand>
        <mrna_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAAGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTT-CCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321835" ref_strand="+" ref_description="SGN-U321835        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4130014-4132474 REVERSE | Aliases: MGH6.5(evalue: 0, score=662) genbank/nr: gi|42564109|ref|NP_187900.2| expressed protein [Arabidopsis thaliana] (evalue: 0, score=662)">
      <seq>atggccccaataatttctgtctccggcgatcagctgaacgacggtactggtcctcccttttcgacttgtgcctttttttcgctctattcctctcgcatttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcattccaggccatcttttcagggtgctcagcaccatggcctgacaactcaagaggatggtcatttggggatgttctcggatcatgagcatcaggttgacagaagccttgttacaattgttaagtcggataggcctggtctacatgtaagagattttcatggtcactgggttcttgtggatggtgatcttggcccccaagaagcaattgtttatcctggccttgcattatatcaggcaactgcgggctatatcagccctgcacttcatcggacagacattggtaatcagcagggtagcatatatggacgctgttctctctcttttaaacttatgcccaagtccatgaccaacctcaattgttcagaaatgcgggctgctggtcatggggttgaagctcaattccagcttcccgtaccagttgatgacttcatgcagagatcaactgatcagttgcttaacaggagcaatttccctacattcaactttccaacagtccaagatggatctatgaagcccatgatgaggagaaggaagagtaactcaagatctaaacctcttccaccttcaaagaggttgagattggaggcacaaagagttctcaaagagagagttcaagacatagctgataaaaagggcattaagctgaggttctgcaccttaaaggattgtgaaagtcacatccagtcacttgatagcccatgtacgaacataagaatggaaattggatggccaccgggagttccatttgttcacccacatgatctcccaaataaggctaagattggatttcttgaaacatatgaacctggttggtctgcaactcatgatatggagttgagcctaatcgatcccggacagccaagtcaacacacttctaactgaatctatgttgctatcagaatgctgcctgatgagtgcttggattcattataccaatatttgtctgcttagttatgctcgtctcatgcagatcttgctaatttgtatatgaacttcaattaagatatgaatgcacaatgaactgttcctttgtttatcgtaatcgttgtccctgtacatattagtttgtaaaatttgatggaatattagttgtaaattccgaatgtactcctagttttctcggctctcatatcttagctcttgtggagcattaaatgttggccaaagagtttgaatttatatagtggttggataaaagaagctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="19657" stop="15313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19357" g_stop="19187" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18842" g_stop="17745" g_length="1098"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="1268" r_length="1097" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17744" i_stop="16590" i_length="1155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16589" g_stop="16212" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1269" r_stop="1646" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16211" i_stop="15926" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15925" g_stop="15592" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1647" r_stop="1980" r_length="334" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U321835" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1981</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19357" e_stop="19187"/>
          <exon e_start="18842" e_stop="17745"/>
          <exon e_start="16589" e_stop="16212"/>
          <exon e_start="15925" e_stop="15592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACTGTAACTATCATTCCCCTAATTATCCTTGTTTTTCTGCATCCGTATCTTTATTTAAGCAGTAGATGTTTCTGGTTTCTTTAGTTGCATATGCATGAGAGATGGCGTATAAGTTCACATCTTTCCTATCTTCTGCATTGGCCATGTTGCTAGTAACAACATTAATCCATTTGAAGAAGCATTTCTGTTCATCTACTCATGCATTCTAGAAGTTTACACCCTCCCTCCCTGTTCTTTTACTTTTACTTTTGGCTCTTGTATATACTGAAAGCAAAAATGTGTTCTGCAGGAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</genome_strand>
        <mrna_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT..............................................................................................................................................................................................................................................................................................GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTAAATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATAAAAGAAGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346913" ref_strand="+" ref_description="SGN-U346913        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agaaaagaacctcaacacagcattccttcttcttcttcttacgaggaatctaagacatcttgacttgtattaggatcatctatgcactaaaaactcaaaagaaggattcaattcatcttaagtttctgtaaggagctgtttgtagcttcaaaatatctttaatttctttccttccaatccgaaaaaagtacttggtgttaattttgaagatttatttagaacaaaaacaaaatgctgactgaagctggtgtctcacgtatgattggtcagaaatatgaaaagttttgtgacaagcttagccgtttttcataattaaaagtgaaaggtcttatttttgcttgttgaggacctgaaggactgttattatctcgaatatctggaaatgactttcaaacatggtcaaagtagataaagcagcctctattggtttaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="17635" stop="16599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17335" g_stop="16899" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U346913" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17335" e_stop="16899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</genome_strand>
        <mrna_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTATTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318131" ref_strand="+" ref_description="SGN-U318131        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14826073-14829044 REVERSE | Aliases: None(evalue: 0, score=749) genbank/nr: gi|50945595|ref|XP_482325.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|51964886|ref|XP_507227.1| PREDICTED P0453D01.16-2 gene product [Oryza sativa (japonica cultivar-group)] >gi|37572952|dbj|BAC98602.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 0, score=769)">
      <seq>tcacactctccaatacctgcagtgaagagaaaaatataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgctattgtgaggagtctgtcaggcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaaaaaatgtttcatcctttacctccaacattaggacctggagtatatctgggttcagtggagagagctacatcttttatcagagacgacctttggtatggcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaggctgctttcttgagctattttgattcatggctccatgcagtagacataaaaatttgcctttgatgtatatttatgctggatatgttaagaaaccaagtgtttatatatatatatatatgtattgcaagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="26551" stop="19397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26251" g_stop="26106" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26105" i_stop="24991" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24498" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="639" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24179" g_stop="24036" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="783" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24035" i_stop="23225" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23224" g_stop="22984" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="1024" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22983" i_stop="21945" i_length="1039">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21944" g_stop="21444" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1025" r_stop="1525" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20477" g_stop="19702" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1526" r_stop="2301" r_length="776" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2305" polyA_stop="2318"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U318131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2301</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26251" e_stop="26106"/>
          <exon e_start="24990" e_stop="24498"/>
          <exon e_start="24179" e_stop="24036"/>
          <exon e_start="23224" e_stop="22984"/>
          <exon e_start="21944" e_stop="21444"/>
          <exon e_start="20477" e_stop="19702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</genome_strand>
        <mrna_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342590" ref_strand="+" ref_description="SGN-U342590        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttcctctcgaagaatccatcactattgcgattgatcttccttttttcactttctcttcttcatgcagagatatcttcacacgcccatgttttttttttgaattttccaggaccccattaattttgttccctcaatttgtactgtgcacaatcgttatcaaaataagtgctttttcaatattactgtatttattatccgtttttcctctcaagtgtttcttttcacttttcctgttcctggatttgatgcttttccttggttatatatgtgtggctgagaactttttgtttttatttccgttgttggagaaatacgatatattggacctcacctagtttgggattgaagcatagttattgacatattgctgattgattatggctgttgttgaacttattatctatttctgttgagaaagatacctgttttcttagggccatgttgattgttgaggcagacctatcatcttatgaaggtcattctttcagattttaaagtagctgatagaaatgatgtgatggataatattgttgtaagctgtggctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="26390" stop="25236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26090" g_stop="25536" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U342590" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26090" e_stop="25536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</genome_strand>
        <mrna_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGATTTGATGCTTTTCCTTGGTTATATATGTGTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATACGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGCTGATTGATTATGGCTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGACCTATCATCTTATGAAGGTCATTCTTTCAGATTTTAAAGTAGCTGATAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346168" ref_strand="+" ref_description="SGN-U346168        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | auxin-responsive protein-related, similar to indole-3-acetic acid induced protein arg7 (SP:P32295) (Vigna radiata) | chr3:4135507-4136150 REVERSE | Aliases: None(evalue: 5e-16, score=81.6) genbank/nr: gi|21536952|gb|AAM61293.1| unknown [Arabidopsis thaliana](evalue: 4e-14, score=81.6)">
      <seq>tttccatctctgcaatattcatcttctctatatcatattttagtttttttttaattaatgaaaccaagaaggaaggaagaaattaagagaagatgaagaagctgaatttgttattgaggaagtgtaagactttgtcaaggcaactaggaagaagctcatcttatagtagtttaaggtcaaaatctgcaagagaagatttttggaatgtggaagataatatggaagattttgagacaattcttgttggcaactcaagaaggaaatatgtcataaaatcaaaatacttgagccatccactattgaatgctctaatagagaaatcaaagcaaaagcatggggaaaaagatcatctttccgttaagtgtgaagttgtgctttttgatcatcttctctgggtacttgaaaatgctgatcctatcaaccttaattctgattcatttgaggaattggctgatctatatgctgtttaatgtgaataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="27895" stop="26814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27595" g_stop="27114" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U346168" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27595" e_stop="27114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</genome_strand>
        <mrna_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTTAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGGTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGCTGTTTAATGTGAATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316709" ref_strand="+" ref_description="SGN-U316709        Tomato 200607 #1 [10 ESTs aligned]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcattcatataattctatagcttgaaagcttagctgcataaatttctcattgctcatttttcttgttgatttcatttgtgtgagagcataaataaatagatcttggaagcttgaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="30343" stop="28557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30043" g_stop="28858" g_length="1186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1186" r_length="1186" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U316709" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1186</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30043" e_stop="28858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316710" ref_strand="+" ref_description="SGN-U316710        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | GTP-binding protein-related, similar to GTP-binding protein GI:10176676 from (Bacillus halodurans) | chr1:20967384-20970006 FORWARD | Aliases: T6H22.14, T6H22_14(evalue: 6e-171, score=597) genbank/nr: gi|42562778|ref|NP_176001.2| GTP-binding protein-related [Arabidopsis thaliana] (evalue: 5e-169, score=597)">
      <seq>ttgtttcattttcccaaatttttgggctcaaatacaattttggtgcaattatttgggtaattttctaatttaccatgtagcgtcgtcgctgagttaaacccgagaaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="37686" stop="28729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37386" g_stop="36977" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35991" g_stop="35803" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="600" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35676" g_stop="35623" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="654" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34315" g_stop="34205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="765" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33828" g_stop="33766" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="828" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33617" g_stop="33363" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="1083" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32861" g_stop="32715" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1084" r_stop="1230" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32609" g_stop="32582" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1258" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31686" g_stop="31616" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1259" r_stop="1329" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30362" g_stop="30303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1330" r_stop="1389" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="29471" g_stop="29029" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1390" r_stop="1832" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U316710" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1831</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37386" e_stop="36977"/>
          <exon e_start="35991" e_stop="35803"/>
          <exon e_start="35676" e_stop="35623"/>
          <exon e_start="34315" e_stop="34205"/>
          <exon e_start="33828" e_stop="33766"/>
          <exon e_start="33617" e_stop="33363"/>
          <exon e_start="32861" e_stop="32715"/>
          <exon e_start="32609" e_stop="32582"/>
          <exon e_start="31686" e_stop="31616"/>
          <exon e_start="30362" e_stop="30303"/>
          <exon e_start="29471" e_stop="29029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTAC-ATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTA</genome_strand>
        <mrna_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACCATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332941" ref_strand="+" ref_description="SGN-U332941        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) (Leishmania donovani) | chr2:8195339-8199567 REVERSE | Aliases: F19F24.10, F19F24_10(evalue: 8e-60, score=226) genbank/nr: gi|3004552|gb|AAC09025.1| unknown protein [Arabidopsis thaliana] (evalue: 6e-58, score=226)">
      <seq>taacactcataaaacagagccactgttcttctttacgcagaggagctagcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcaaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccacaggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacttcatctgaggatggtactattaaatattgggacttttccgtgccggagctaatgagaagtattgatgttaagttgcccatttactcaatggtaattccaggtttatcatcagaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggagggagctgtgctttatggtggcagataaggaagtgtaacttaactaaatgtactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaataccaactaaagattctgatcattcagtgcttcagaacatcagattacatcatacgaaaaccctgagcactctagcttttcatccaacagatagaatagtttcagctggagatgtacaggaaagatcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="49818" stop="52754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50118" g_stop="50290" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50291" i_stop="50378" i_length="88">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50379" g_stop="50564" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="359" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50565" i_stop="51309" i_length="745">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51310" g_stop="51489" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="539" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51490" i_stop="52233" i_length="744">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52234" g_stop="52454" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="758" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U332941" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50118" e_stop="50290"/>
          <exon e_start="50379" e_stop="50564"/>
          <exon e_start="51310" e_stop="51489"/>
          <exon e_start="52234" e_stop="52454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</genome_strand>
        <mrna_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGT-ACAGGAAAGATCTT-ATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321501" ref_strand="+" ref_description="SGN-U321501        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) (Leishmania donovani) | chr2:8195339-8199567 REVERSE | Aliases: F19F24.10, F19F24_10(evalue: 2e-76, score=283) genbank/nr: Quinonprotein(evalue: 5e-79, score=298)">
      <seq>acgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatacataagataagccgaggaaatcttgctgatcttgaggaaacagggaagttcggatatgcatctctgtacggggacctaccagactttagcttagagagaaaacaagctgcatcgattacatcagtaccatcagaaagatattgggagacgctattcagtggaccatctcacaatcttcctcctcttgctaaattgtgttccacattcctggaatcattactacagaagagtagtgcagttgagtgattggcagtagtgtccggttgagctttgttgcaaggcagacttgctaatctatgctcatcgatgaaacgacaacattgttgttaggcttgatcccattgtagccgagagagagctgcctgacatgcacatgcacatgcacatagtaatactagctcgaaagtgtgaacagtggggtcgacttataatctggtctaagaacgagccagcccgttcagttaaagctttcgagttcaagaaaaagatgccctgatcgagtgggtttaaaattttggtagcacgatttgatgtgtcgtctggatattgaattttttgtagcttgcaacttattgagcctgcagggctaagtaggcatactcaatactgaatagatgttcttttttgacaatatttggtcatgtgttgtgtttaattataacatttataagcgcaatagagttgctatttaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="56380" stop="61236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56680" g_stop="56716" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56717" i_stop="57005" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57006" g_stop="57135" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="167" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57525" g_stop="57657" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="300" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58686" g_stop="58852" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="467" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59291" g_stop="59483" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="660" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59484" i_stop="60284" i_length="801">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60285" g_stop="60935" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="1311" r_length="651" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1312" polyA_stop="1343"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U321501" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1311</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56680" e_stop="56716"/>
          <exon e_start="57006" e_stop="57135"/>
          <exon e_start="57525" e_stop="57657"/>
          <exon e_start="58686" e_stop="58852"/>
          <exon e_start="59291" e_stop="59483"/>
          <exon e_start="60285" e_stop="60935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAGGTGTGTCCCGTCTTCTCTGCCTAAGTTCATCTGACACTAAGCTTTTATGTATTTCAGTGTCTGGTGTCTATTAATTTGGGGATGTACATGGGCCTTTTTTGGGTTATTTTATGTGATAGGTTGCTTCAGAATACTTTGGATTGGATCAATATACCAAAGTACTTGAAATAAACCTTGTTTTTAAAAACTTTATAATGGGTGCTACAAGCCTTAAAATGACGGGTCCAGAGGCACAAAGATGTATGGTTGCTGAATGCGTTGTGATAAGAAGTCCACTACTACAACTCATTACTAAGTTGGATCAGCTATATATTAATCCTCATTTCATCATTTAAACTCATATTCAATCATCATCTTAACAAATAAAATACGACATGTCCTGTGATAACCTTACGAGAGAAAGGGATTGGGTTTGATGTATTTGTTCTCCTCTGCCCACAAGGTCCTTGTTTCTTCATGGCATGATTGTCAGATCAAGCACATATTCTTGAAAATCTGTACCAAAATCTGTGGATTGATGATATTTAAGAGGAAACAAGCTCTATCTCTAGAACATATATTCGCTGGTAAAATCAGATGATGCATTATTTATAGCTTTAACAAGGAGGTGGGGGGTTTGGATAAGAGGGCTAAGGGGAAGGGCTGCATTAGGGAATTGAACACCTACCCGACTGAGCTGTAGGGCAATTCTCTGCAGGTGAAATATCCTGATACTTTATAATAATCTTCAGAAAACAGTATTTCTTTTTTTAAAAAAGATAATTGTCATGACTGATGAAACTATATGCTATCTATTTGCAGGGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATAAGCGCAATAGAGTTGCTATTTAAAT</genome_strand>
        <mrna_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATTACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATAAGCGCAATAGAGTTGCTATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328548" ref_strand="+" ref_description="SGN-U328548        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:29751865-29753837 REVERSE | Aliases: YUP8H12R.30, YUP8H12R_30(evalue: 8e-72, score=265) genbank/nr: Contains(evalue: 5e-70, score=265)">
      <seq>ggaaatgtcggtcatgctatgcaattagttgataaaatggaggaatatggatatccaacaaatactgtgacttacaattctcttataagaggactttgtatgagggggaacctgaacaagagcctgcaatttgtcgaaaagttgattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcaaagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttgaaggacgttgggaagaagcgaatgagtttctggcagagatggttggagaagatcgttctccatcgattgtaacgtacaatatattgatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="62903" stop="64012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63203" g_stop="63712" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U328548" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63203" e_stop="63712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</genome_strand>
        <mrna_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAAGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332200" ref_strand="+" ref_description="SGN-U332200        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:29751865-29753837 REVERSE | Aliases: YUP8H12R.30, YUP8H12R_30(evalue: 1e-35, score=146) genbank/nr: Contains(evalue: 9e-34, score=146)">
      <seq>cacggatttactccagactcttacacctattcttcattgatcagaggattatgcttggaaaagatgttggtggctgctgtcgatgtattctacatgatggaagaaaatggatataggcctgatattgacaatttcaatgcgcttgtgcttggactatgcaaatccaaaagaacagacttgtcattaaaggtatttgaggacatgatcagcaaaggttatatgcctaatgagataacatataccattctagtcgaaggcatcatccatgaagatcacaaggagcttgcatcagtagtcctaagggaactgcaccggaaagaagtaataagtagaaatactgttgaaagacttgctatgcaatatgagcttgaagatatggcagtatgctgatctttcacaaaaccaatggcgtgtggtcacaggatgagaaactaacaaaggttcttcattagcaaatgctaaatacaccaaataaacaaagttattctcatgctgtatgtcagatggtaactttacacaactaataaaccttcgggataattggttttcagatatggtagttgattcatagtaggcttcaaataggtgagtggtgaaacttgtcaattctcactagcttactcttgctactcaattgctgttacaaaaaaagttgtatatcctaaatcctttatctaaagctttctttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="63788" stop="65050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64088" g_stop="64743" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="708"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U332200" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64088" e_stop="64743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</genome_strand>
        <mrna_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATATTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTCTAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326706" ref_strand="+" ref_description="SGN-U326706        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | SNARE-associated protein-related, contains weak similarity to SNARE-associated protein snapin (Mus musculus) gi:4206090:gb:AAD11418 | chr1:29749584-29750708 REVERSE | Aliases: YUP8H12R.31, YUP8H12R_31(evalue: 3e-29, score=125) genbank/nr: gi|30699390|ref|NP_178028.2| expressed protein [Arabidopsis thaliana] gi|26451487|dbj|BAC42842.1| unknown protein [Arabidopsis thaliana] gi|28973157|gb|AAO63903.1| unknown protein [Arabidopsis thaliana](evalue: 2e-27, score=125)">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaaattgcatggtttcagctctgtgccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="68748" stop="72559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69048" g_stop="69288" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69289" i_stop="70586" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70587" g_stop="70751" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70752" i_stop="71038" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71039" g_stop="71096" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71097" i_stop="72058" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72059" g_stop="72259" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="665" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U326706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69048" e_stop="69288"/>
          <exon e_start="70587" e_stop="70751"/>
          <exon e_start="71039" e_stop="71096"/>
          <exon e_start="72059" e_stop="72259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343133" ref_strand="+" ref_description="SGN-U343133        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:20955811-20957077 FORWARD | Aliases: F14J16.33(evalue: 9e-24, score=107) genbank/nr: At1g56020(evalue: 6e-22, score=107)">
      <seq>ctctttctttttatatatatatatattccattctgtaatcgttacgttaacgtttcttctatttgtatgtacgccggaaattatggcttcagcttgcgttaacaaaatgggtatgtcgccggagaagtttttggattgttctccggctgcgaagtacaagtcatatggttggttaagtccaaggatgtcatttagtaaggacggcgaagcttccaaagttgccggagctaagcagacgagtgttgaaaatgataaagtggaggaattagatccagaagtttcgaaagatatgggcgattttgagttttgccttgaagatccggttaatatgctgccagctgatgagctttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="76304" stop="77258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76604" g_stop="76958" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U343133" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76604" e_stop="76958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</genome_strand>
        <mrna_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAAGGACGGCGAAGCTTCCAAAGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAAGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTTAATATGCTGCCAGCTGATGAGCTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331867" ref_strand="+" ref_description="SGN-U331867        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5687936-5691191 FORWARD | Aliases: F19K19.6, F19K19_6(evalue: 5e-40, score=160) genbank/nr: gi|42562100|ref|NP_173110.2| expressed protein [Arabidopsis thaliana] (evalue: 3e-38, score=160)">
      <seq>aacggtaaaacccagaatcgacaaaacaatggttaatgagtatacattctgttttggagtagtggttagcatattgcattgttagactgtctatgtcacttctcagttgcttgatacttatggaaatgcatattttattacatttaagttgtttttcaccttgttctctgttagtgcaaatcttccctccatggctgaagagttcaagtattcttgcaacactgccagtgaaaccctagaatggatccatgcaattatcaacttcattgcaccttatcgttattttatagatgctcatgtcgtcaactttttcaaggatagactatgggaagctgtggataaagaatggatggattgtttacagaaggagtcggttgaaaatcttctccggattccttctggtgtggttcaggatcactggcctggctcacttaaagacttcatacttactctgaggtctctttgtctttcacgtgaacaggctgattttcaggaattttcaggaatgcacatagcttcactaagtaatgttttagctcaaggcatgaatcataagaaaaagcatgaagtggaagtactttctgctctggtcagcttagtcgcaaagcaagttggtgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="83982" stop="86602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84282" g_stop="84597" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84598" i_stop="84724" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84725" g_stop="84820" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="412" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84821" i_stop="85355" i_length="535">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85356" g_stop="85436" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="493" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85437" i_stop="85706" i_length="270">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85707" g_stop="85781" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="568" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85782" i_stop="86249" i_length="468">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86250" g_stop="86302" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="621" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U331867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84282" e_stop="84597"/>
          <exon e_start="84725" e_stop="84820"/>
          <exon e_start="85356" e_stop="85436"/>
          <exon e_start="85707" e_stop="85781"/>
          <exon e_start="86250" e_stop="86302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAAGTAAGGCATGAAAGTAGCTTAGTCCTCTTACACTCCTATCTTTGTGCTCAATTGGTTGGCTACAAATCTGTGGAACAGTGTTTTATTCTTTGCTTTGAGTCTTTTGTGTGCACCACCTGCTGATATCAGGTCATTTGCGAAAGCTTCTTCTTTTTTTTTTACCATCAAGCTATTAATATTAGCCTTTAGCTATGTGATGCTGGAGTTTTTTTCTAACATTGAATTTTCTAGCTATGTGCTGCTCTAAGTATCCGTTTCAGTGTTCATTTTGTTTTCTCAACCTGAATGAAAGAATGTAATAAATTTTCAGAAGTTTTAACAAAATGGATCAAAGATATACGAGTGTTTTTAAAAAAAAAAATAATTTCTACATTGAGCTTAGGTTCAGAAAACCAACTAATGCAGGTTCCGTGTATGGGTTCAATTTTCTTAACCTGAACGATAGAATGGTAAATACTGTCTAAGCAGGTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</genome_strand>
        <mrna_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG...............................................................................................................................GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325723" ref_strand="+" ref_description="SGN-U325723        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5687936-5691191 FORWARD | Aliases: F19K19.6, F19K19_6(evalue: 1e-22, score=103) genbank/nr: gi|42562100|ref|NP_173110.2| expressed protein [Arabidopsis thaliana] (evalue: 1e-20, score=103)">
      <seq>tagggcgtcaggggaaagccttacggcgccaacagaatcaaaggatcctggaatccaatttgcatcatgggggatcttcagaatctggtgaaccacgggagagtgtggcgtttcttcatgaatactcttctattcagagttctaatcgcggcgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaagcaatttgcgaccaggaacaagctatattattacagatgtctttttaaccagaaaaagaagaacagaagaaacaggaaaaattttgcaaccaggacctagctttgtacatggtccaagcaaaaaatgaagctttagtggtgaaatggtattatatttatttatctataaatgatatttggtttgcaaggtgtctctttacacatttgatttcaagtttatatactgctgtcttttttcaaggtgagaagacaagcccaaaaatgagaatgtggttatcaattgaaatatatatccaacctattgctaatttaaatgttggtttcacattttgactactcagggtttttatgattatgatattgtcctttattcactttgggatgtaatgtcatgagaaattgtcctttttaatatataagttgtggagggttgtgtcccctgtcctatgaagtattcaaggcccatagcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="88871" stop="119595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89171" g_stop="89257" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89258" i_stop="89605" i_length="348">
            <donor d_prob="0.793" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89606" g_stop="89796" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="281" r_length="194" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89797" i_stop="90517" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90518" g_stop="91326" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="1090" r_length="809" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91327" i_stop="91597" i_length="271">
            <donor d_prob="0.984" d_score="0.82"/>
            <acceptor a_prob="0.322" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91598" g_stop="91626" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1119" r_length="29" r_score="0.448"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U325723" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1116</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89171" e_stop="89257"/>
          <exon e_start="89606" e_stop="89796"/>
          <exon e_start="90518" e_stop="91326"/>
          <exon e_start="91598" e_stop="91626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGGTCGTCAGAATCTGGTGAGTATTGTGAAGGATAGATACCATTGATAAACTTAATTGGGTTTCAAGGTATATCTAGTATTCATTATAACTTCTGTCAAATGCTTATTCTTAAGATATATCATATAATTTTGACCAGCCTTGTAAGTTGTAGATTTCATCATTTTATGCTGTACATATCTTATTGTCACGCCCCAAAACTGGAAGGATGCAACTGACATTCCATGAACATTTTTTTAAAAATTTAAACACAACATCGGTCGCCTAAACAATTGAAATAACACAAGTGACTGTATACACCCAAATTTCGAAGCTTTATGAAGGCTACCTATTAAGAAAATAAGCTCTTAAGTGCTTTCTATGCAGGTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAAT---AGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTTTATATACTGCTGTCTTTTCTCAAGGTGAGAAGACAAGCCCAAGAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTCTGACTACTCAGGGTTCTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCACTGTCCTATGAAGTATTCAAGGACAATAGACAAATGACAGGTGATGACATGAACTTTAAGCTAATTACACATTTTATATTATGTTATTCTTGCTTCCTTAGAGTGATTTCAAGTTCCTCGCAGATAACTCGTTCTTGTATTTATATGTTATTATTACATAAGTGTCTGGATTGTGGTGTATGGTAATCGTGCTGTTGATTAGTCTATGTAAAGGCTGAAATAGAAGCTTAGTTAGTTGCAACAAACTATAAAGTGCATTGTTTATCATGATTACCATTGCTAAATAGAATGTAGTGCAGGTTTACCTGCAGGAGAGAATGACTTGCAAAATCTTTAAAGA</genome_strand>
        <mrna_strand>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGATCTTCAGAATCTG............................................................................................................................................................................................................................................................................................................................................................GTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAATCGCGGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTTTAGTGGTGAAATGGTATTATATTTATTTATCTATAAATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATTTCAAGTTTATATACTGCTGTCTTTTTTCAAGGTGAGAAGACAAGCCCAAAAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTTTGACTACTCAGGGTTTTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCCCTGTCCTATGAAGTATTCAAGGCCCATAGCCCAAAAAAAA...............................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334483" ref_strand="+" ref_description="SGN-U334483        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gattagtcaatccaaaatttttccctaaaaggaaaacctatttatgttaagaaattatggtaaataaaatccaacaaatctcctcccccttggcctgtatttctgaccaaaataaatttctccacattcttcatttaatcttcaacaacttgcttctcttcttcttaatctcctttgtaaaatttatgtctcaaccatagaaaacctctctgaaacaatttctccaacaaaatcttcattactgtcaaaaagattgcggctagaacctaccacctgtcaagatgaaccaccaccctctttctaacctggtccaataatcgattatcgaaccactgaacctgacctctgtcattaaatggctctaatacccacttgttaggatcgaaataagcaggtgtaaatgcggaagctagcaaagcaaacttcgaaagaccacgagtaagaagacaacgagaaatataccaaaagacaccaaagatttaacgtggttcggtcaatcgacctacgttcacaaaggagatgagcaatccactataaatatgagagtacaatatacagagagaaacaacatcaaccaattcattcggaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="93931" stop="95115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94231" g_stop="94815" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U334483" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94231" e_stop="94815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGA-CAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAA-CATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAA-CTA-CACCTGTCAAGATGAA-CA-CA-CCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGA-CTCTGTCATTAAATGGCTCTAATA-CCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACA-CAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</genome_strand>
        <mrna_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACCAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACCATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACCTACCACCTGTCAAGATGAACCACCACCCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACCTCTGTCATTAAATGGCTCTAATACCCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACCAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322483" ref_strand="+" ref_description="SGN-U322483        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC022 | transcription activator NAC1 (NAC1), contains Pfam PF02365: No apical meristem (NAM) domain; identical to NAC1 GB:AAF21437 GI:6649236 from (Arabidopsis thaliana) | chr1:20950236-20952906 REVERSE | Aliases: ANAC022(evalue: 3e-76, score=282) genbank/nr: gi|34558777|gb|AAQ75123.1| salicylic acid-induced protein 19 [Capsicum annuum] (evalue: 2e-101, score=372)">
      <seq>ttttccttttactatattctaaaaatatgacacataatattttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcaatcatcagaaaaggaagtctagtaggaatgagaaaaaccctagttttctatcaagggagagccccaaaaggaagaaaaagtgactgggttatgcatgaattccgcctagaacttcccattcgtcctcaaatttcttctatcaaggaggattgggtattatgccgagtatttcacaagaagaaggaattacttgctacaaagcaagaaattggaagcaacaatatatactacgataacgatacaataagttgttcatctctaccaccattaatggatccttacattactttcgaccaaacaaaccctaacaacaataatatgaatatgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="98635" stop="104047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98935" g_stop="99679" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101694" g_stop="101965" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="1017" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101966" i_stop="103557" i_length="1592">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103558" g_stop="103747" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1018" r_stop="1207" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U322483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98935" e_stop="99679"/>
          <exon e_start="101694" e_stop="101965"/>
          <exon e_start="103558" e_stop="103747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</genome_strand>
        <mrna_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344159" ref_strand="-" ref_description="SGN-U344159        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|34558777|gb|AAQ75123.1| salicylic acid-induced protein 19 [Capsicum annuum] (evalue: 7e-32, score=140)">
      <seq>tcacccctaaccaaactttcacttcccatagccaccacctcccctccgccacaaccgccatcggatctaccgcatacggtggttttccagctgatattggaaattacctaaatgccactgcaacatcctctacgtgtgataataacaaagtaattagagctgttttaagtcatttgagtaccaagaataatattattatggaaggtaataatagcaataacaacaatattatcaatcctgcccaaaatataaaaggaggaaattcacctagctttggtgaaggaagttctgaaactagctttttatttgaggtgggatatcctacaatgtggaacaattattgatttttgagagaaaatattctacttagatgtgtgatataatatatgacaagtcttgttttagttgctagtattatattgtaatcttagaatatatatatataactatactagctagattaatttccaatgcatgtaattccaataatgatactttcctagtggttaaagtatataattgtctcctagatagattggaattctccgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="103481" stop="104630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103781" g_stop="104329" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U344159" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103781" e_stop="104329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</genome_strand>
        <mrna_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATTTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAAAGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323339" ref_strand="+" ref_description="SGN-U323339        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA repair protein recA, identical to DNA repair protein recA, chloroplast (Precursor) SP:Q39199 from (Arabidopsis thaliana) ;contains Pfam profile: PF00154 recA bacterial DNA recombination protein | chr1:29741854-29745049 REVERSE | Aliases: YUP8H12R.33, YUP8H12R_33(evalue: 2e-172, score=602) genbank/nr: gi|18412241|ref|NP_565198.1| replicase -related [Arabidopsis thaliana] gi|2500098|sp|Q39199|RECA_ARATH DNA repair protein recA, chloroplast precursor gi|7443882|pir||T01050 hypothetical protein YUP8H12R.33 - Arabidopsis thaliana gi|289208|gb|AAA61781.1| DNA repair protein gi|3152570|gb|AAC17051.1| Match to nuclear-encoded chloroplast DNA repair protein (E. coli recA homolog) gb|L15229. [Arabidopsis thaliana] gi|15292903|gb|AAK92822.1| putative replicase [Arabidopsis thaliana] gi|21281181|gb|AAM45008.1| putative replicase [Arabidopsis thaliana](evalue: 2e-170, score=602)">
      <seq>ctcgtgccgatggaactccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgcttgttgatgctgagcatgcttttgatcctgcatactccaaagcacttggagtagatgtagagaatttgatcgtctgccagcctgataatggagagatggctctagaaatcgcagaccggatgtgtagatcaggtgccgtagatctcatttgcattgattcagtctcagcccttactccacgtgctgaaattgagggagaaatcgggatgcagcaaatgggtttacaagcacgcctgatgagtcaagctttacgtaaaatgtcaggcaatgcctccaaagctggatgtactcttatattcctcaatcagataagatacaagattggtgtttattacggaaatcctgaggtcacaagtggagggattgccttaaagtttttcgcctccgttcgacttgaaatccgttccacagggaagataaaatctgcaaaaggagacgaggaagtgggtattaaggtccgagtgagagttcaaaagagtaaggtttctagaccatacaagcaagcagaatttgaaattatgtttggagaaggagtgagcaagctgggttgtgtattagattgtgcggaactgattgaggtggtggctaagaaaggttcatggtataactacggagagcataggctgggacagggaagagagaaagcattgcaatatttgagagaaaatcctcttctctctgaagaaatagaaaagatggttcggtcatcggtgctagagacaaacgggtttttaggctcttcttcattgaaacatccactgccgcagcttctagaggaagatgcacttcaagagatgcaataacgcggatcagagttctgcttcaattgattatgataacagagcatttttcagccaacattgacatccatatgtgattctacattagaaatgagcaaagttggggacactgccagatttgctttgtatgagaccatttctgtgcactagagattcttgaagaaaggtgtatattcttgtaagctaatggatctttgcacgaagaggaagacacatacatcctgaattaaccaaactgaagaattagagttaaggtggtgaaaaggagtgttagctctttgctgcatattttgtctttgttttggttgtactggtagccaaaattttgaaaatctgaagatttttgcttgtaacatttgcattggaagtaccactctagtgttgcgttggtattattatcccattagctctatgcattaagaaatctagtaaaatatttgtctggtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="+" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="107585" stop="113002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107884" g_stop="108227" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108228" i_stop="108328" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108329" g_stop="108420" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="437" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108421" i_stop="108615" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108616" g_stop="108691" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="513" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108692" i_stop="109036" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109037" g_stop="109099" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="576" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109100" i_stop="109412" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109413" g_stop="109542" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="706" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109543" i_stop="109668" i_length="126">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109669" g_stop="109754" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="792" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109755" i_stop="109844" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109845" g_stop="109970" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="918" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="109971" i_stop="110288" i_length="318">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="110289" g_stop="110393" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="919" r_stop="1023" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="110394" i_stop="110482" i_length="89">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="110483" g_stop="110539" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1080" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="110540" i_stop="110959" i_length="420">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="110960" g_stop="111022" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1081" r_stop="1143" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="111023" i_stop="111095" i_length="73">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="111096" g_stop="111172" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1144" r_stop="1220" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="111173" i_stop="111648" i_length="476">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="111649" g_stop="111721" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1221" r_stop="1293" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="111722" i_stop="112150" i_length="429">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="112151" g_stop="112697" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1294" r_stop="1841" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1846" polyA_stop="1862"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="+" ref_id="SGN-U323339" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1839</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107884" e_stop="108227"/>
          <exon e_start="108329" e_stop="108420"/>
          <exon e_start="108616" e_stop="108691"/>
          <exon e_start="109037" e_stop="109099"/>
          <exon e_start="109413" e_stop="109542"/>
          <exon e_start="109669" e_stop="109754"/>
          <exon e_start="109845" e_stop="109970"/>
          <exon e_start="110289" e_stop="110393"/>
          <exon e_start="110483" e_stop="110539"/>
          <exon e_start="110960" e_stop="111022"/>
          <exon e_start="111096" e_stop="111172"/>
          <exon e_start="111649" e_stop="111721"/>
          <exon e_start="112151" e_stop="112697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGCC-ATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAAGTAACAACTTTTCCTTGTTTACACCATTAGAAATGATTTTTCAGTTTTTTGTGCTAGCAACCTTGTCAATAATCATGGTGGTCTTACTAGAGTTTGTACTTTCAACCAAACTTTTGTCTATCTCAGTCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAGGTAAGCCAACATTTTAATTTTCTGAATTAATTAGAAAGCTTTAAATTGTTCCCACCAGTTCCTGATTTCACGGTCTCTTATTTTGTGCAGGGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAGGTATTCTTGACTTAGAAGTTGCACTGTTCTCTTTTCAAGTACTGAAACGGCAGCCTGGTGCATAAAGCATCTTGCGTTCACTAGGGTCCAGGAAAGGGCCAGATTGGGGTGTGATGTAGATAGCCTACCCTAATGTAAGCATTAGTGGCTGACTCGGTAGAACCCATGAGCTATAGGTCACAGGTGATGGATAATGTTGTCAATGAAAACTTGTCATTCTTGCTTCCATTGTGATTAACTTCATAAACTAGCATATTTCTCATCATAACTTGTGGACTTCACTTGATGAATGGAAGTAATTACTATGTTTCGAATCAGATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCTGTGAGTACAGAACTGCTCAGTCGGCTAGTAGATTTTTTATTTTACTCATTTAAGTCTCTTTATGAAAAAATTGTTGCTCTTCTTTTCAGGCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAGGTAAATCTGCTTCACGTCATAATTATTCAATGTGGTGCCATCAGTATTATGTTTGTGGGATGGAATACATATGGTAATGGTTCAGTTATACAAGTGTTCAGTGCTTAAAACTATAAAGCTGACATTTGCATAATAAAAGGTTATCATGGTTATTAAAATTTCCTGCACTGGAAGCATGGTAATTCCACTGTATGATCATTGTAAATAGGGGTATATTGTTGAAGACTTTATGTAGTTACTTTAGCGGTGCATCCACACGGAGGTCTCTTTTAGCGAAAACCTCTATTTATTTTAAAATTCTTTTAGCAAATACGGAGACATGAAAGAAAGTGCCAGTATACAGCTGGTCTTTTACTGTTTGCATCTTCTTGCTGATTATAGTGCCAACATGCTAATTGGTCTTATTATTATCCTTCTTAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTGGTTTGTGGCATTCTTATCTTTCTTTTCCGTAGTGTTTGGCTCAAATTCTGTTCCTAAAATTGAGTTTTTGCAGGGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAGGTTAGTACATTTTGCAGTTTTTGCTATATTATAGGGACTTCGAAGAAGCTTACTAAACTTTTAATTTATGAAACTCCATATCTCAATAGAAATATTTGCATATTTTTGTCATGACCGCTCAAGATTCTGGGAATTTTCCACATGCTGTACTAGAAGTGACAGAGCTTATACTCGAATGAAAAGAAAACAGCTTAGGAGAATTGATAGATTTCATACTTTATGTGGTTGCTGATGGAAATAATTTGAAGTACTAAGAATAAGCAAGAAATTGACTTTCAATGTGATTGAAAACTGTCTGAGTAACTGATTATTGTTTCAGAAGCTAAGATTAATCAAAGATTTGTCTTATACTTCAGTGAGCTGAGTCTTGCAAGGTTCATTACCAATATTATGTGACTCGGCACTGTTTCTTGATGTTTTACTATATTACTAATCTTGCTTGAGTCAGCCACTGATTCTTGATACGTTTAATGAAGGCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAGGTATCCTGCTCTCCTTTTTAGGTGCATTTGGTAAGAGTTTTAGTTGTCATACTGTGTAAGATACTAGTTCAATATCTAAACATAACCTGGGAGGTTTTATATGGAAGTAAATAACCTGATGATAAAAGAGAACTAATAAGCAAACAAAATTCTGTTTGCATATTTGGTATGTTTGTTAGCTGATCTGTTCTGGTGTCTTGAGCTTGTAGGCTGTTATTTTAGATGAAAAAATGATGGAAACTATGACCATTTTATGTGGTCATAGTTTTTGAGCTACAGCAAATGTATTTATGTGGTCATAGTACCTATACACGAAGATAATATTCTTTTATATCGTAGTTATTAGATTAACATATTGAGAGATTTCTTGCACACTGTTTATCAATATTTTGGAGGCGGAGAGATGACATTATCTATCTGCCTGAGCAGATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGT-AAATATTTGTCT</genome_strand>
        <mrna_strand>CTCGTGCCGATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA..............................................................................................................................TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG..........................................................................................GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG..............................................................................................................................................................................................................................................................................................................................ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT.........................................................................................GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG.........................................................................GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAAATATTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338952" ref_strand="+" ref_description="SGN-U338952        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem II 10 kDa polypeptide, identical to photosystem II 10 kDa polypeptide, chloroplast (precursor) SP:P27202 from (Arabidopsis thaliana); contains Pfam profile: PF04725 photosystem II 10 kDa polypeptide PsbR | chr1:29740911-29741831 FORWARD | Aliases: YUP8H12R.34, YUP8H12R_34(evalue: 1e-51, score=200) genbank/nr: gi|1217642|emb|CAA65231.1| PSII polypeptide [Lycopersicon esculentum] >gi|3914471|sp|Q40163|PSBR_LYCES Photosystem II 10 kDa polypeptide, chloroplast precursor (evalue: 2e-64, score=249)">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttaaaaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaanttcggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="114628" stop="79529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114328" g_stop="114177" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113564" g_stop="113506" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113349" g_stop="113294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113217" g_stop="113165" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113053" g_stop="112821" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112820" i_stop="112554" i_length="267">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112553" g_stop="112531" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="576" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112530" i_stop="112088" i_length="443">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112087" g_stop="112024" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="640" r_length="64" r_score="0.469"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U338952" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114328" e_stop="114177"/>
          <exon e_start="113564" e_stop="113506"/>
          <exon e_start="113349" e_stop="113294"/>
          <exon e_start="113217" e_stop="113165"/>
          <exon e_start="113053" e_stop="112821"/>
          <exon e_start="112553" e_stop="112531"/>
          <exon e_start="112087" e_stop="112024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAGATTTCTTAATGCATAGAGCTAATGGGATAATAATACCAACGCAACACTAGAGTGGTACTTCCAATGCAAATGTTACAAGCAAAAATCTTCAGATTTTCAAAATTTTGGCTACCAGTACAACCAAAACAAAGACAAAATATGCAGCAAAGAGCTAACACTCCTTTTCACCACCTTAACTCTAATTCTTCAGTTTGGTTAATTCAGGATGTATGTGTCTTCCTCTTCGTGCAAAGATCCATTAGCTTACAAGAATATACACCTTTCTTCAAGAATCTCTAGTGCACAGAAATGGTCTCATACAAAGCAAATCTGGCAGTGTCCCCAACTTTGCTCATTTCTAATGTAGAATCACATATGGATGTCAATGTTGGCTGAAAAATGCTCTGTTATCATAATCAATTGAAGCAGAACTCTGATCCGCGTTATTGCATCTCTTGAAGTGCATCTTCCTCTAGAAGCTGCGGCAGTGGATGTTTCAATGAAGAAGAGCCTAAAAACCCGTTTGTCTCTAGCACCGATGACCGAACCATCTGCTCAGGCAGATAGATAATGTCATCTCTCCGCCTCCAAAATATTGATAAACAGTGTGCAAGAAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTAAAA...........................................................................................................................................................................................................................................................................AAAAAAAAAAAATTAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANTTCGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338947" ref_strand="-" ref_description="SGN-U338947        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem II 10 kDa polypeptide, identical to photosystem II 10 kDa polypeptide, chloroplast (precursor) SP:P27202 from (Arabidopsis thaliana); contains Pfam profile: PF04725 photosystem II 10 kDa polypeptide PsbR | chr1:29740911-29741831 FORWARD | Aliases: YUP8H12R.34, YUP8H12R_34(evalue: 5e-33, score=116) genbank/nr: gi|1418984|emb|CAA99757.1| photosystem II 10 kD polypeptide [Lycopersicon esculentum](evalue: 1e-37, score=135)">
      <seq>ggtctccaagtggtaatgtctatgttggaggtacccctggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggaatcttcattaatatgtaaaagctgaacttttcctgtggataattttccatctaaaaaaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="113494" stop="112565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113194" g_stop="113165" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113053" g_stop="112836" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="248" r_length="218" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="273"/>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U338947" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338947" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113194" e_stop="113165"/>
          <exon e_start="113053" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGTCTCCAAGTGGTAATGTCTATGTTGGAG...............................................................................................................GTACCCCTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGAATCTTCATTAATATGTAAAAGCTGAACTTTTCCTGTGGATAATTTTCCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344998" ref_strand="-" ref_description="SGN-U344998        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaatggtttcctttctctggcttcctattctttcttctttgtgttggtgggtggtttaggaggtgaaggggagcagcgtggttgagaccgagactatcaggtggctaagtttccttgtggtggtcttgattcttcatcaaggtggcaaagatagtttggctctaaaaatagatacggtactggccttctgtgatgaaatgtgcttgaaggacagagcttctatccaagaagacggcaatccacatcacaaagagtttggcttgattcaaccaatgagcggaaggagattgtccaaagctgtacacactccatgatgtgcgtgccaggtggatttcatgctggagttactgtaaatagggttggataaaaaacatttttgcgagagtgatctgcattccagccccctctgaagcacaggagtcagctgcatttcaaatgattacccaattacagactatggcagaccacacccattacatttaatgatggcaaagaaacagcaacaccaatatttttgaatcctattaatggctaccataccatagtactgtattagtttcattactttccagaagcatatattatgtgtgtctgtgaaactgaatttgttgtcttagaatattagttggttgcaacccgtatcagtgctttgaacgaaaatcaaggccaaatacattcggtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="117629" stop="116048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117329" g_stop="117189" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117188" i_stop="117093" i_length="96">
            <donor d_prob="0.527" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117092" g_stop="116908" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="326" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116907" i_stop="116705" i_length="203">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116704" g_stop="116348" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="685" r_length="359" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U344998" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344998" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117329" e_stop="117189"/>
          <exon e_start="117092" e_stop="116908"/>
          <exon e_start="116704" e_stop="116348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAGGCATGTTTTGGCATCAGAACTTGCTTAAGTTTTATCTCCTCTTTTATCATTGTTTGTCTTGATCCACTCCATATATATTATGATGTTTGTGCTCTTGGTCTGGCAGTATGTCTGATAATTTGTTCCTTTGTTGAACGATCCTTGGAAATGCTTGTGTTTTTCATTCCCGATTCAACTAATCCTTGGAGTTCATTTTCTCATAGGTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGAT-TTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTG-AGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</genome_strand>
        <mrna_strand>AAATGGTTTCCTTTCTCTGGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG................................................................................................GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG...........................................................................................................................................................................................................GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATAAAAAACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCATATATTATGTGTGTCTGTGAAACTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACGAAAATCAAGGCCAAATACATTCGGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NxQMJQ/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330568" ref_strand="+" ref_description="SGN-U330568        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: hypothetical(evalue: 5e-05, score=50.8)">
      <seq>ttagttgcctctgtatcttcttttttttccttggtaaagatatttattaaaaatggtatcaagatggcacagaaaagactacatgacctaaactacaccactcgctccaaacatactacatattttcccctaataagtttaaaaaacccacttccatcacctccaacggaaagaggaattttatccatcaaagaaaaccaaaaatccagcaagtgtctagtaaatggagcaaagaaagagcatccccataacttaaccatcctatcaagagtacaactattagtacaaacatacaaattcttgatgcatttgtttctgactctgggtatctgcagcctccgtatctccttttagacccattttattccaagctgacgtgatgtgtagtggaagtttcctaacagattcaaccttttaggagattcatcatagctagatggttttcatgatgctgctctacctacctgtacatttcctttaatgcatgctttcaatgatgtcaaaactacagcaattgctccatcctaggtggggggggggggggggggggaccccaaaaaaggggccctttccctggctcccaattttttcttcttgggggggggggggggtttagaagggaaaggggaccaccggggtaaaaaccaaaatacaggggggaaaaattccctgggggggggctggattcttcacaaggggggaaaaaaaagttgggttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0215P04-ld4lb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0215P04.1" temp_strand="-" temp_description="C07HBa0215P04.1  AC210361.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0215P04 upload_account_name:france">
        <position start="118185" stop="117024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117885" g_stop="117189" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117188" i_stop="117093" i_length="96">
            <donor d_prob="0.527" d_score="0.64"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117092" g_stop="117064" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="726" r_length="29" r_score="0.724"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0215P04.1" gen_strand="-" ref_id="SGN-U330568" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0215P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117885" e_stop="117189"/>
          <exon e_start="117092" e_stop="117064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGT-GGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATA</genome_strand>
        <mrna_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGACCCCAAAAAAGGGGCCCTTTCCCTGGCTCCCAATTTTTTCTTCTTGGGGGGGGGGGGGGGTTTAGAAGGGAAAGGGGACCACCGGGGTAAAAACC-AAAATACAGGGGGGAAAAATTCCCTGGGGGGGGGCTGGATTCTTCACAAGG................................................................................................GGGGAAAAAAAAGTTGGGTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>27</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7849" PGL_stop="11123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7849" e_stop="8047"/>
            <exon e_start="9059" e_stop="9464"/>
            <exon e_start="10076" e_stop="10282"/>
            <exon e_start="10393" e_stop="10570"/>
            <exon e_start="10660" e_stop="11123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7849" e_stop="8047" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9059" e_stop="9464" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10076" e_stop="10282" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10393" e_stop="10570" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10660" e_stop="11123" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7849" stop="8047"/>
              <exon start="9059" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="11123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </first_frame>
            <second_frame>  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </second_frame>
            <third_frame>   E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7851" stop="8047"/>
                    <exon start="9059" stop="9464"/>
                    <exon start="10076" stop="10282"/>
                    <exon start="10393" stop="10570"/>
                    <exon start="10660" stop="10772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9255" e_stop="9464"/>
            <exon e_start="10076" e_stop="10282"/>
            <exon e_start="10393" e_stop="10418"/>
            <exon e_start="10660" e_stop="10964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9255" e_stop="9464" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9465" i_stop="10075" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10076" e_stop="10282" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10393" e_stop="10418" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10419" i_stop="10659" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="10660" e_stop="10964" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9255" stop="9464"/>
              <exon start="10076" stop="10282"/>
              <exon start="10393" stop="10418"/>
              <exon start="10660" stop="10964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCA : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGG</gDNA_template>
            <first_frame> I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  </first_frame>
            <second_frame>  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I   : I  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W </second_frame>
            <third_frame>   *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9255" stop="9464"/>
                    <exon start="10076" stop="10282"/>
                    <exon start="10393" stop="10418"/>
                    <exon start="10660" stop="10666"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7857" e_stop="8047"/>
            <exon e_start="9059" e_stop="9339"/>
            <exon e_start="10118" e_stop="10282"/>
            <exon e_start="10393" e_stop="10570"/>
            <exon e_start="10660" e_stop="10727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7857" e_stop="8047" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="8048" i_stop="9058" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9059" e_stop="9339" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9340" i_stop="10117" i_length="778"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10118" e_stop="10282" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="10283" i_stop="10392" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10393" e_stop="10570" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10571" i_stop="10659" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10660" e_stop="10727" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7857" stop="8047"/>
              <exon start="9059" stop="9339"/>
              <exon start="10118" stop="10282"/>
              <exon start="10393" stop="10570"/>
              <exon start="10660" stop="10727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG : AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</gDNA_template>
            <first_frame> E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E   : E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  </first_frame>
            <second_frame>  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  :  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G </second_frame>
            <third_frame>   E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R :   N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7857" stop="8047"/>
                    <exon start="9059" stop="9339"/>
                    <exon start="10118" stop="10128"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREETE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9280" stop="9339"/>
                    <exon start="10118" stop="10282"/>
                    <exon start="10393" stop="10570"/>
                    <exon start="10660" stop="10727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMCPHICQRRLSYRATFHVKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11690" PGL_stop="15391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11690" e_stop="11971"/>
            <exon e_start="12914" e_stop="13040"/>
            <exon e_start="13892" e_stop="14030"/>
            <exon e_start="14167" e_stop="14255"/>
            <exon e_start="14933" e_stop="15391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.363" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11690" e_stop="11971" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11972" i_stop="12913" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12914" e_stop="13040" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.363" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13041" i_stop="13891" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13892" e_stop="14030" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14031" i_stop="14166" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14167" e_stop="14255" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.936">
            <gDNA_intron_boundary i_start="14256" i_stop="14932" i_length="677"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="14933" e_stop="15391" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11690" stop="11971"/>
              <exon start="12914" stop="13040"/>
              <exon start="13892" stop="14030"/>
              <exon start="14167" stop="14255"/>
              <exon start="14933" stop="15391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG : AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT : TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG : GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG : GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</gDNA_template>
            <first_frame> A  T  E  F  P  H  T  I  L  S  C  A  V  S  S  K  V  E  I  S  Y  R  K  M  K  V  H  S  C  I  H  P  L  P  S  T  P  S  T  G  I  L  V  S  A  G  P  A  E  A  K  L  A  A  N  T  R  K  L  Y  S  L  T  L  N  S  S  N  Y  V  P  F  P  Y  K  D  Q  K  F  S  R  S  S  S  T  D  F  S  R  T  A  I  G  S  :  N  V  S  E  D  T  D  D  M  F  D  D  L  L  R  T  H  G  K  V  V  Y  K  R  N  D  Q  K  P  A  S  E  E  I  D  D  D  A  E  S  L  S   : F  A  M  A  V  A  K  V  A  S  D  V  K  A  G  D  I  K  V  L  F  V  K  P  L  V  Y  W  T  R  F  F  I  I  A  T  A  F  S  R  P  Q  I  D  A  I  G :   T  R  V  R  D  M  A  E  E  Q  Y  G  R  V  A  S  G  D  S  K  P  N  S  W  T  L  L  D  F   : G  D  V  V  V  H  L  F  L  P  P  Q  R  E  Y  Y  N  L  E  E  F  Y  G  N  A  A  S  I  E  L  P  F  E  N  Q  Q  Q  L  R  G  P  T  G  Y  *  S  P  N  S  Y  G  L  V  V  I  N  R  K  C  S  K  L  *  G  N  H  S  V  P  P  I  A  D  K  E  R  L  T  Y  L  G  K  L  C  *  S  T  G  C  V  I  F  L  K  L  V  V  R  *  S  S  L  L  S  C  L  C  R  S  I  G  *  E  I  V  Y  K  H  S  E  L  I  R  A  H  C  H  V  *  *  K  N  L  T  S  C  F  F  F  P  *  C  E  L  S  L  N  E  E  *  G  F  K  </first_frame>
            <second_frame>  Q  L  S  F  P  I  Q  S  S  L  V  Q  Y  L  L  K  L  K  S  R  I  E  K  *  K  Y  T  P  A  F  I  L  F  P  L  L  P  P  P  E  F  W  S  L  P  V  L  R  K  L  S  L  L  L  T  P  E  S  F  I  L  *  L  *  I  P  L  I  M  S  H  F  L  I  K  I  R  N  F  P  E  A  A  L  R  I  F  L  E  R  L  S  V  R :   M  *  V  K  I  Q  M  T  C  L  M  I  S  *  E  R  M  A  K  W  Y  T  K  E  M  T  K  N  L  Q  V  R  R  L  M  M  M  L  K  A  Y  R  :  L  Q  W  L  W  L  K  L  Q  V  M  S  R  L  E  I  *  R  S  S  L  S  S  L  *  Y  I  G  L  G  F  S  L  L  L  L  H  S  L  A  H  R  L  M  P  L   : G  P  E  *  E  I  W  L  R  N  N  M  E  E  L  L  L  E  I  Q  N  P  T  R  G  H  Y  W  T  L  :  V  M  S  L  F  I  Y  F  F  L  R  S  V  S  T  T  T  W  K  N  S  M  A  M  Q  H  P  S  N  Y  H  L  R  T  N  N  N  C  E  D  L  L  V  I  E  V  P  T  V  M  A  S  W  *  L  T  E  S  V  A  N  Y  E  A  I  T  V  F  P  R  L  L  T  R  N  D  *  H  I  W  A  N  S  V  D  P  L  V  A  L  F  F  L  N  *  *  *  D  K  A  L  Y  *  V  V  S  V  E  V  L  V  K  K  *  F  T  S  I  L  N  *  *  G  L  I  V  T  F  D  E  R  T  *  H  P  A  S  F  S  L  D  V  S  *  V  *  M  K  N  E  D  L  N </second_frame>
            <third_frame>   N  *  V  S  P  Y  N  P  L  L  C  S  I  F  *  S  *  N  L  V  *  K  N  E  S  T  L  L  H  S  S  S  S  L  Y  S  L  H  R  N  F  G  L  C  R  S  C  G  S  *  A  C  C  *  H  Q  K  A  L  F  F  N  F  E  F  L  *  L  C  P  I  S  L  *  R  S  E  I  F  Q  K  Q  L  Y  G  F  F  *  N  G  Y  R  F   : E  C  K  *  R  Y  R  *  H  V  *  *  S  P  K  N  A  W  Q  S  G  I  Q  K  K  *  P  K  T  C  K  *  G  D  *  *  *  C  *  K  P  I  V :   C  N  G  C  G  *  S  C  K  *  C  Q  G  W  R  Y  K  G  P  L  C  Q  A  S  S  I  L  D  S  V  F  H  Y  C  Y  C  I  L  S  P  T  D  *  C  H  W  :  D  Q  S  K  R  Y  G  *  G  T  I  W  K  S  C  F  W  R  F  K  T  Q  L  V  D  T  T  G  L  W :   *  C  R  C  S  S  I  S  S  S  A  A  *  V  L  Q  P  G  R  I  L  W  Q  C  S  I  H  R  T  T  I  *  E  P  T  T  I  A  R  T  Y  W  L  L  K  S  Q  Q  L  W  P  R  G  D  *  Q  K  V  *  Q  I  M  R  Q  S  Q  C  S  P  D  C  *  Q  G  T  I  N  I  S  G  Q  T  L  L  I  H  W  L  R  Y  F  S  *  I  S  S  K  I  K  L  S  T  K  L  S  L  *  K  Y  W  L  R  N  S  L  Q  A  F  *  T  N  K  G  S  L  S  R  L  M  K  E  P  N  I  L  L  L  F  P  L  M  *  V  E  F  K  *  R  M  R  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11690" stop="11971"/>
                    <exon start="12914" stop="13040"/>
                    <exon start="13892" stop="14030"/>
                    <exon start="14167" stop="14255"/>
                    <exon start="14933" stop="15066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATEFPHTILSCAVSSKVEISYRKMKVHSCIHPLPSTPSTGILVSAGPAEAKLAANTRKLYSLTLNSSNYVPFPYKDQKFSRSSSTDFSRTAIGSNVSEDTDDMFDDLLRTHGKVVYKRNDQKPASEEIDDDAESLSFAMAVAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGTRVRDMAEEQYGRVASGDSKPNSWTLLDFGDVVVHLFLPPQREYYNLEEFYGNAASIELPFENQQQLRGPTGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19357" PGL_stop="15592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19357" e_stop="19187"/>
            <exon e_start="18842" e_stop="17745"/>
            <exon e_start="16589" e_stop="16212"/>
            <exon e_start="15925" e_stop="15592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.860" e_score="0.999"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19357" e_stop="19187" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19186" i_stop="18843" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="18842" e_stop="17745" e_length="1098"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.860">
            <gDNA_intron_boundary i_start="17744" i_stop="16590" i_length="1155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16589" e_stop="16212" e_length="378"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16211" i_stop="15926" i_length="286"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="15925" e_stop="15592" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19357" stop="19187"/>
              <exon start="18842" stop="17745"/>
              <exon start="16589" stop="16212"/>
              <exon start="15925" stop="15592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG : TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG : GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT : GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</gDNA_template>
            <first_frame> M  A  P  I  I  S  V  S  G  D  Q  L  N  D  G  T  G  P  P  F  S  T  C  A  F  F  S  L  Y  S  S  R  I  W  I  P  P  L  S  R  L  R  P  T  C  L  V  K  P  V  A  V  Q  R  L  P  M  :  W  V  W  S  R  V  N  I  F  Q  H  K  Q  C  K  I  *  R  I  S  W  Q  A  M  A  C  Q  L  W  V  V  *  S  S  V  I  W  Y  H  W  K  V  F  L  L  I  R  I  N  Y  L  S  Q  L  C  H  S  H  W  L  S  I  Q  L  P  L  Y  S  Y  P  Q  V  M  E  L  F  *  G  L  V  *  S  L  P  D  F  T  F  N  T  N  P  L  I  L  Q  R  M  L  F  I  L  M  I  L  R  S  G  V  R  P  L  V  T  M  Q  I  L  N  N  G  K  K  H  M  I  S  G  Q  G  S  L  L  R  N  P  P  L  K  L  N  S  L  L  L  V  W  L  T  Y  S  L  C  L  V  E  Q  Q  G  I  Y  W  T  P  S  A  S  I  *  I  C  V  A  L  H  L  L  K  Y  L  I  M  F  H  S  E  I  E  K  H  H  P  L  Y  Y  P  S  V  V  I  P  G  H  L  F  R  V  L  S  T  M  A  *  Q  L  K  R  M  V  I  W  G  C  S  R  I  M  S  I  R  L  T  E  A  L  L  Q  L  L  S  R  I  G  L  V  Y  M  *  E  I  F  M  V  T  G  F  L  W  M  V  I  L  A  P  K  K  Q  L  F  I  L  A  L  H  Y  I  R  Q  L  R  A  I  S  A  L  H  F  I  G  Q  T  L  V  I  S  R  V  A  Y  M  D  A  V  L  S  L  L  N  L  C  P  S  P  *  P  T  S  I  V  Q  K  C  G  L  L  V  M  G  L  K  L  N  S  S  F  P  Y  Q  L  M  T  S  C  R  D  Q  L  I  S  C  L  T  G  A  I  S  L  H  S  T  F  Q  Q  S  K  M  :  D  L  *  S  P  *  *  G  E  G  R  V  T  Q  D  L  N  L  F  H  L  Q  R  G  *  D  W  R  H  K  E  F  S  K  R  E  F  K  T  *  L  I  K  R  A  L  S  *  G  S  A  P  *  R  I  V  K  V  T  S  S  H  L  I  A  H  V  R  T  *  E  W  K  L  D  G  H  R  E  F  H  L  F  T  H  M  I  S  Q  I  R  L  R  L  D  F  L  K  H  M  N  L  V  G  L  Q  L  M  I  W  S  *  A  *  S  I  P  D  S  Q  V  N  T  L  L  T  :  E  S  M  L  L  S  E  C  C  L  M  S  A  W  I  H  Y  T  N  I  C  L  L  S  Y  A  R  L  M  Q  I  L  L  I  C  I  *  T  S  I  K  I  *  M  H  N  E  L  F  L  C  L  S  *  S  L  S  L  Y  I  L  V  C  K  I  *  W  N  I  S  C  K  F  R  M  Y  S  *  F  S  R  L  S  Y  L  S  S  C  G  A  F  Y  V  G  Q  R  V  *  I  Y  I  V  V  G  S  *  K  L  T  *  L  </first_frame>
            <second_frame>  W  P  Q  *  F  L  S  P  A  I  S  *  T  T  V  L  V  L  P  F  R  L  V  P  F  F  R  S  I  P  L  A  F  G  F  L  L  S  R  D  *  D  L  H  A  W  *  N  R  L  Q  C  N  V  C  L  C :   G  Y  G  L  E  L  I  Y  F  S  T  S  S  A  K  S  R  G  F  H  G  R  Q  W  P  A  S  S  G  S  C  E  A  Q  *  F  G  T  I  G  R  S  S  F  *  F  V  *  I  I  C  L  N  F  V  T  V  I  G  S  V  F  S  C  H  Y  T  A  I  H  K  *  W  S  S  F  K  V  *  S  R  V  C  P  T  L  L  S  T  Q  T  L  L  S  C  S  G  C  Y  S  F  *  *  F  S  G  V  V  *  D  L  W  L  P  C  R  S  S  T  M  A  R  N  I  *  F  Q  A  R  A  H  S  F  G  T  H  H  *  N  *  I  P  S  C  W  F  G  *  H  I  L  F  A  W  *  S  S  K  G  Y  I  G  R  H  Q  L  L  F  K  S  A  *  L  S  I  Y  *  N  T  *  *  C  S  T  Q  K  S  R  N  I  I  L  C  I  I  R  L  L  S  F  Q  A  I  F  S  G  C  S  A  P  W  P  D  N  S  R  G  W  S  F  G  D  V  L  G  S  *  A  S  G  *  Q  K  P  C  Y  N  C  *  V  G  *  A  W  S  T  C  K  R  F  S  W  S  L  G  S  C  G  W  *  S  W  P  P  R  S  N  C  L  S  W  P  C  I  I  S  G  N  C  G  L  Y  Q  P  C  T  S  S  D  R  H  W  *  S  A  G  *  H  I  W  T  L  F  S  L  F  *  T  Y  A  Q  V  H  D  Q  P  Q  L  F  R  N  A  G  C  W  S  W  G  *  S  S  I  P  A  S  R  T  S  *  *  L  H  A  E  I  N  *  S  V  A  *  Q  E  Q  F  P  Y  I  Q  L  S  N  S  P  R  W :   I  Y  E  A  H  D  E  E  K  E  E  *  L  K  I  *  T  S  S  T  F  K  E  V  E  I  G  G  T  K  S  S  Q  R  E  S  S  R  H  S  *  *  K  G  H  *  A  E  V  L  H  L  K  G  L  *  K  S  H  P  V  T  *  *  P  M  Y  E  H  K  N  G  N  W  M  A  T  G  S  S  I  C  S  P  T  *  S  P  K  *  G  *  D  W  I  S  *  N  I  *  T  W  L  V  C  N  S  *  Y  G  V  E  P  N  R  S  R  T  A  K  S  T  H  F  *  L :   N  L  C  C  Y  Q  N  A  A  *  *  V  L  G  F  I  I  P  I  F  V  C  L  V  M  L  V  S  C  R  S  C  *  F  V  Y  E  L  Q  L  R  Y  E  C  T  M  N  C  S  F  V  Y  R  N  R  C  P  C  T  Y  *  F  V  K  F  D  G  I  L  V  V  N  S  E  C  T  P  S  F  L  G  S  H  I  L  A  L  V  E  H  F  M  L  A  K  E  F  E  F  I  *  W  L  D  L  R  S  *  L  N  F </second_frame>
            <third_frame>   G  P  N  N  F  C  L  R  R  S  A  E  R  R  Y  W  S  S  L  F  D  L  C  L  F  F  A  L  F  L  S  H  L  D  S  S  S  L  E  I  E  T  Y  M  L  G  E  T  G  C  S  A  T  S  A  Y   : V  G  M  V  S  S  *  Y  I  S  A  Q  A  V  Q  N  L  E  D  F  M  A  G  N  G  L  P  A  L  G  R  V  K  L  S  D  L  V  P  L  E  G  L  P  S  D  S  Y  K  L  S  V  S  T  L  S  Q  S  L  A  Q  Y  S  A  A  I  I  Q  L  S  T  S  D  G  A  L  L  R  S  S  L  E  S  A  R  L  Y  F  Q  H  K  P  S  Y  P  A  A  D  V  I  H  S  D  D  S  Q  E  W  C  K  T  S  G  Y  H  A  D  P  Q  Q  W  Q  E  T  Y  D  F  R  P  G  L  T  P  S  E  P  T  T  E  I  E  F  P  P  A  G  L  A  D  I  F  S  L  L  G  R  A  A  R  D  I  L  D  A  I  S  F  Y  L  N  L  R  S  S  P  F  T  E  I  L  D  N  V  P  L  R  N  R  E  T  S  S  S  V  L  S  V  C  C  H  S  R  P  S  F  Q  G  A  Q  H  H  G  L  T  T  Q  E  D  G  H  L  G  M  F  S  D  H  E  H  Q  V  D  R  S  L  V  T  I  V  K  S  D  R  P  G  L  H  V  R  D  F  H  G  H  W  V  L  V  D  G  D  L  G  P  Q  E  A  I  V  Y  P  G  L  A  L  Y  Q  A  T  A  G  Y  I  S  P  A  L  H  R  T  D  I  G  N  Q  Q  G  S  I  Y  G  R  C  S  L  S  F  K  L  M  P  K  S  M  T  N  L  N  C  S  E  M  R  A  A  G  H  G  V  E  A  Q  F  Q  L  P  V  P  V  D  D  F  M  Q  R  S  T  D  Q  L  L  N  R  S  N  F  P  T  F  N  F  P  T  V  Q  D   : G  S  M  K  P  M  M  R  R  R  K  S  N  S  R  S  K  P  L  P  P  S  K  R  L  R  L  E  A  Q  R  V  L  K  E  R  V  Q  D  I  A  D  K  K  G  I  K  L  R  F  C  T  L  K  D  C  E  S  H  I  Q  S  L  D  S  P  C  T  N  I  R  M  E  I  G  W  P  P  G  V  P  F  V  H  P  H  D  L  P  N  K  A  K  I  G  F  L  E  T  Y  E  P  G  W  S  A  T  H  D  M  E  L  S  L  I  D  P  G  Q  P  S  Q  H  T  S  N   : *  I  Y  V  A  I  R  M  L  P  D  E  C  L  D  S  L  Y  Q  Y  L  S  A  *  L  C  S  S  H  A  D  L  A  N  L  Y  M  N  F  N  *  D  M  N  A  Q  *  T  V  P  L  F  I  V  I  V  V  P  V  H  I  S  L  *  N  L  M  E  Y  *  L  *  I  P  N  V  L  L  V  F  S  A  L  I  S  *  L  L  W  S  I  L  C  W  P  K  S  L  N  L  Y  S  G  W  I  L  E  A  N  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18822" stop="17745"/>
                    <exon start="16589" stop="16212"/>
                    <exon start="15925" stop="15924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISAQAVQNLEDFMAGNGLPALGRVKLSDLVPLEGLPSDSYKLSVSTLSQSLAQYSAAIIQLSTSDGALLRSSLESARLYFQHKPSYPAADVIHSDDSQEWCKTSGYHADPQQWQETYDFRPGLTPSEPTTEIEFPPAGLADIFSLLGRAARDILDAISFYLNLRSSPFTEILDNVPLRNRETSSSVLSVCCHSRPSFQGAQHHGLTTQEDGHLGMFSDHEHQVDRSLVTIVKSDRPGLHVRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYISPALHRTDIGNQQGSIYGRCSLSFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSTDQLLNRSNFPTFNFPTVQDGSMKPMMRRRKSNSRSKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCESHIQSLDSPCTNIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWSATHDMELSLIDPGQPSQHTSN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19357" stop="19187"/>
                    <exon start="18842" stop="18792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAPIISVSGDQLNDGTGPPFSTCAFFSLYSSRIWIPPLSRLRPTCLVKPVAVQRLPMWVWSRVNIFQHKQCKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17335" e_stop="16899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="17335" e_stop="16899" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17335" stop="16899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</gDNA_template>
            <first_frame> R  K  E  P  Q  H  S  I  P  S  S  S  S  Y  E  E  S  K  T  S  *  L  V  L  G  S  S  M  H  *  K  L  K  R  R  I  Q  F  I  L  S  F  C  K  E  L  F  V  A  S  K  Y  L  *  F  L  S  F  Q  S  E  K  S  T  W  C  *  F  *  R  F  I  *  N  K  N  K  M  L  T  E  A  G  V  S  R  M  I  G  Q  K  Y  E  K  F  C  D  K  L  S  R  F  S  *  L  K  V  K  G  L  S  F  A  C  *  G  P  E  G  L  L  L  S  R  I  S  G  N  D  F  Q  T  W  S  K  *  I  K  Q  P  L  L  V  *  S   </first_frame>
            <second_frame>  E  K  N  L  N  T  A  F  L  L  L  L  L  T  R  N  L  R  H  L  D  L  Y  *  D  H  L  C  T  K  N  S  K  E  G  F  N  S  S  *  V  S  V  R  S  C  L  *  L  Q  N  I  F  N  F  F  P  S  N  P  K  K  V  L  G  V  N  F  E  D  L  F  R  T  K  T  K  C  *  L  K  L  V  S  H  V  *  L  V  R  N  M  K  S  F  V  T  S  L  A  V  F  H  N  *  K  *  K  V  L  V  L  L  V  E  D  L  K  D  C  Y  Y  L  E  Y  L  E  M  T  F  K  H  G  Q  S  R  *  S  S  L  Y  W  F  N  H  </second_frame>
            <third_frame>   K  R  T  S  T  Q  H  S  F  F  F  F  L  R  G  I  *  D  I  L  T  C  I  R  I  I  Y  A  L  K  T  Q  K  K  D  S  I  H  L  K  F  L  *  G  A  V  C  S  F  K  I  S  L  I  S  F  L  P  I  R  K  K  Y  L  V  L  I  L  K  I  Y  L  E  Q  K  Q  N  A  D  *  S  W  C  L  T  Y  D  W  S  E  I  *  K  V  L  *  Q  A  *  P  F  F  I  I  K  S  E  R  S  *  F  C  L  L  R  T  *  R  T  V  I  I  S  N  I  W  K  *  L  S  N  M  V  K  V  D  K  A  A  S  I  G  L  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26251" PGL_stop="19702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26251" e_stop="26106"/>
            <exon e_start="24990" e_stop="24498"/>
            <exon e_start="24179" e_stop="24036"/>
            <exon e_start="23224" e_stop="22984"/>
            <exon e_start="21944" e_stop="21444"/>
            <exon e_start="20477" e_stop="19702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26251" e_stop="26106" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.806">
            <gDNA_intron_boundary i_start="26105" i_stop="24991" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24990" e_stop="24498" e_length="493"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24497" i_stop="24180" i_length="318"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24179" e_stop="24036" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24035" i_stop="23225" i_length="811"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23224" e_stop="22984" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="22983" i_stop="21945" i_length="1039"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21944" e_stop="21444" e_length="501"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.973">
            <gDNA_intron_boundary i_start="21443" i_stop="20478" i_length="966"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20477" e_stop="19702" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26251" stop="26106"/>
              <exon start="24990" stop="24498"/>
              <exon start="24179" stop="24036"/>
              <exon start="23224" stop="22984"/>
              <exon start="21944" stop="21444"/>
              <exon start="20477" stop="19702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG : AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG : GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG : GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG : AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG : TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</gDNA_template>
            <first_frame> S  H  S  P  I  P  A  V  K  R  K  I  *  Y  S  *  H  W  G  L  S  W  R  S  V  G  L  T  M  F  A  A  F  C  F  P  F  P  I  S  Y  R  V  *  A  A  C  V  R :   N  M  D  R  A  R  L  N  K  R  T  H  C  S  G  S  T  P  S  E  E  S  A  L  D  L  E  K  Y  C  C  S  Y  S  N  L  P  S  L  S  P  P  T  L  Q  P  Y  A  S  A  G  Q  H  S  E  S  N  A  A  Y  F  S  W  P  S  R  L  N  D  A  A  E  E  R  A  N  Y  F  G  N  L  Q  K  G  V  L  P  E  T  L  G  R  L  P  E  G  Q  R  A  T  T  L  L  D  L  M  T  I  R  A  S  H  S  K  L  L  R  C  Y  S  L  G  T  A  I  G  F  R  I  R  R  G  V  L  T  D  I  P  A  I  L  V  F  V  S  R  K  V  H  K  Q  W  L  S  P  I  Q  C  L  P  T  A  L  E  :  G  P  G  G  V  W  C  E  V  D  V  V  E  F  S  Y  F  G  A  P  E  P  T  P  K  E  Q  L  Y  T  E  I  V  D  D  L  R  G  S  D  P  Y  I  G  S  G  S  Q  :  V  A  S  Q  E  T  Y  G  T  L  G  A  I  V  R  S  L  S  G  N  R  Q  V  G  F  L  T  N  R  H  V  A  V  D  L  D  Y  P  N  Q  K  M  F  H  P  L  P  P  T  L  G  P  G  V  Y  L  G  S  V  E  R  A  T  S  F  I  R  D  D  L  W  Y  G  I  F  A  G  I  N  P   : E  T  F  V  R  A  D  G  A  F  I  P  F  T  D  D  F  D  M  T  S  V  T  T  S  V  K  G  I  G  E  I  G  D  V  K  I  I  D  L  Q  S  P  I  S  S  L  I  G  K  Q  V  T  K  V  G  R  S  S  G  L  T  T  G  T  V  L  A  Y  A  L  E  Y  N  D  E  K  G  I  C  F  L  T  D  F  L  V  N  G  E  N  Q  Q  T  F  D  L  E  G  D  S  G  S  L  I  V  L  K  G  E  N  G  E  K  P  R  P  I  G  I  I  W  G  G  T  A  N  R  G  R  L  K  L  K  V  G  Q  S  P  E  N  W  T  S  G  V  D  L  G  R  L  L  N  F  L  E  L  D  I  I  T  K  D  E  A  L  K   : V  A  V  Q  E  Q  R  A  A  S  A  T  M  V  G  S  T  A  G  D  S  S  P  P  D  I  M  L  P  K  D  K  I  E  P  L  G  L  H  I  Q  Q  I  P  L  E  D  G  I  G  G  P  D  I  N  S  S  P  V  E  A  T  F  N  L  E  E  S  G  I  N  F  D  A  S  V  E  H  Q  F  I  P  S  F  N  G  Q  P  P  A  N  Q  D  D  H  R  D  K  S  A  Y  E  N  L  S  A  L  R  K  G  S  D  E  D  I  S  F  S  L  Q  L  G  G  H  E  S  K  R  R  R  S  E  P  P  P  S  A  D  E  P  E  *  F  S  P  F  I  C  W  Y  I  *  L  *  G  L  P  W  K  G  N  A  F  C  V  W  F  *  N  K  K  E  V  Q  F  G  F  *  G  A  K  F  S  S  Y  G  H  *  W  Q  P  V  Y  E  E  F  C  I  *  T  S  Q  *  C  K  I  Q  L  *  N  T  C  K  L  K  M  R  L  L  S  *  A  I  L  I  H  G  S  M  Q  *  T  *  K  F  A  F  D  V  Y  L  C  W  I  C  *  E  T  K  C  L  Y  I  Y  I  Y  V  L  Q </first_frame>
            <second_frame>  H  T  L  Q  Y  L  Q  *  R  E  K  Y  N  T  L  N  T  G  A  S  H  G  V  A  W  V  *  L  C  L  Q  P  F  V  F  L  S  Q  F  H  I  E  F  R  L  L  V  *   : E  I  W  I  E  Q  G  *  I  K  E  P  I  A  Q  V  Q  H  R  Q  R  S  Q  P  *  I  L  K  N  T  V  A  V  I  L  I  F  L  H  L  V  H  Q  H  F  N  L  M  H  R  L  D  N  T  L  R  V  M  L  H  T  S  P  G  L  V  G  *  M  M  L  L  K  R  E  Q  T  I  S  E  I  F  R  K  G  F  C  Q  K  L  L  A  D  C  P  R  G  S  E  Q  Q  P  Y  L  T  S  *  L  *  G  H  L  I  A  N  S  C  V  A  T  V  S  V  Q  Q  L  V  F  V  F  D  V  V  F  *  L  I  Y  Q  Q  Y  *  C  L  Y  P  G  K  F  T  N  N  G  L  V  Q  S  S  V  Y  L  L  L  *  R :   A  L  E  V  C  G  V  K  W  M  W  S  S  S  P  I  L  V  H  Q  S  Q  H  P  R  S  S  C  T  Q  R  *  S  M  T  C  G  V  V  T  H  I  L  V  Q  D  L  R :   *  Q  A  R  R  H  M  E  P  W  A  L  L  *  G  V  C  Q  A  I  D  K  L  V  S  *  Q  T  G  M  L  L  L  T  *  I  T  Q  I  K  K  C  F  I  L  Y  L  Q  H  *  D  L  E  Y  I  W  V  Q  W  R  E  L  H  L  L  S  E  T  T  F  G  M  A  Y  L  L  A  *  I  Q  :  R  H  L  S  G  Q  M  V  H  S  F  L  S  Q  M  I  L  I  *  P  L  L  L  L  L  L  R  A  *  G  K  L  E  M  S  K  L  *  I  C  N  L  L  L  V  V  S  S  E  S  K  *  R  R  S  E  E  A  L  D  *  L  Q  A  L  S  W  H  M  P  L  N  I  M  M  R  K  G  F  A  S  *  L  I  F  L  S  M  E  K  T  S  R  L  L  T  L  K  E  T  V  E  V  *  S  F  *  R  V  R  M  G  K  N  P  D  Q  L  V  L  F  G  V  E  L  Q  I  G  D  G  L  N  *  R  W  D  N  L  Q  K  I  G  L  V  E  L  T  L  G  V  C  S  I  S  L  N  L  I  S  L  P  K  M  K  L  *  K  :  L  Q  C  K  N  R  E  L  P  L  P  Q  W  W  A  L  R  L  G  I  L  H  L  L  I  *  C  F  Q  R  T  K  *  S  L  L  G  F  T  F  N  K  F  P  W  K  M  A  L  V  A  L  I  *  T  L  H  L  W  K  L  H  L  T  W  K  K  V  G  S  T  L  M  Q  V  L  N  I  N  S  F  Q  A  S  M  G  N  L  R  L  I  K  T  T  I  V  I  S  Q  H  T  R  I  S  Q  L  L  G  K  A  L  M  K  T  S  A  F  P  C  S  W  V  V  M  N  P  R  E  D  V  Q  S  L  H  Q  A  Q  M  N  Q  N  D  F  L  L  L  S  A  G  T  F  N  F  E  V  F  H  G  K  E  M  H  F  V  F  G  S  K  T  R  K  R  S  N  L  V  F  E  V  L  N  F  H  H  M  A  I  D  G  N  L  C  M  K  S  S  V  F  E  H  L  S  S  A  K  S  N  C  K  I  H  A  S  *  K  *  G  C  F  L  E  L  F  *  F  M  A  P  C  S  R  H  K  N  L  P  L  M  Y  I  Y  A  G  Y  V  K  K  P  S  V  Y  I  Y  I  Y  M  Y  C   </second_frame>
            <third_frame>   T  L  S  N  T  C  S  E  E  K  N  I  I  L  L  T  L  G  P  L  M  A  *  R  G  F  D  Y  V  C  S  L  L  F  S  F  P  N  F  I  S  S  L  G  C  L  C  E  :  K  Y  G  S  S  K  V  K  *  K  N  P  L  L  R  F  N  T  V  R  G  V  S  L  R  S  *  K  I  L  L  Q  L  F  *  S  S  F  T  *  S  T  N  T  S  T  L  C  I  G  W  T  T  L  *  E  *  C  C  I  L  L  L  A  *  S  A  K  *  C  C  *  R  E  S  K  L  F  R  K  S  S  E  R  G  F  A  R  N  S  W  P  I  A  R  G  A  A  S  N  N  L  T  *  P  H  D  Y  K  G  I  S  *  Q  T  L  A  L  L  Q  S  R  Y  S  N  W  F  S  Y  S  T  W  C  F  D  *  Y  T  S  N  T  S  V  C  I  P  E  S  S  Q  T  M  A  *  S  N  P  V  S  T  Y  C  F  R   : G  P  W  R  C  V  V  *  S  G  C  G  R  V  L  L  F  W  C  T  R  A  N  T  Q  G  A  V  V  H  R  D  S  R  *  P  A  G  *  *  P  I  Y  W  F  R  I  S   : G  S  K  P  G  D  I  W  N  L  G  R  Y  C  E  E  S  V  R  Q  S  T  S  W  F  P  N  K  P  A  C  C  C  *  L  R  L  P  K  S  K  N  V  S  S  F  T  S  N  I  R  T  W  S  I  S  G  F  S  G  E  S  Y  I  F  Y  Q  R  R  P  L  V  W  H  I  C  W  H  K  S  R :   D  I  C  Q  G  R  W  C  I  H  S  F  H  R  *  F  *  Y  D  L  C  Y  Y  F  C  *  G  H  R  G  N  W  R  C  Q  N  Y  R  F  A  I  S  Y  *  *  S  H  R  K  A  S  D  E  G  R  K  K  L  W  I  D  Y  R  H  C  L  G  I  C  P  *  I  *  *  *  E  R  D  L  L  L  D  *  F  S  C  Q  W  R  K  P  A  D  F  *  P  *  R  R  Q  W  K  F  N  R  F  E  G  *  E  W  G  K  T  P  T  N  W  Y  Y  L  G  W  N  C  K  *  G  T  A  *  T  K  G  G  T  I  S  R  K  L  D  *  W  S  *  P  W  A  S  A  Q  F  P  *  T  *  Y  H  Y  Q  R  *  S  S  K  S :   C  S  A  R  T  E  S  C  L  C  H  N  G  G  L  Y  G  W  G  F  F  T  S  *  Y  N  A  S  K  G  Q  N  R  A  S  W  A  S  H  S  T  N  S  L  G  R  W  H  W  W  P  *  Y  K  L  F  T  C  G  S  Y  I  *  L  G  R  K  W  D  Q  L  *  C  K  C  *  T  S  I  H  S  K  L  Q  W  A  T  S  G  *  S  R  R  P  S  *  *  V  S  I  R  E  S  L  S  S  *  E  R  L  *  *  R  H  Q  L  F  L  A  V  G  W  S  *  I  Q  E  K  T  F  R  A  S  T  K  R  R  *  T  R  M  I  F  S  F  Y  L  L  V  H  L  T  L  R  S  S  M  E  R  K  C  I  L  C  L  V  L  K  Q  E  R  G  P  I  W  F  L  R  C  *  I  F  I  I  W  P  L  M  A  T  C  V  *  R  V  L  Y  L  N  I  S  V  V  Q  N  P  I  V  K  Y  M  Q  A  K  N  E  A  A  F  L  S  Y  F  D  S  W  L  H  A  V  D  I  K  I  C  L  *  C  I  F  M  L  D  M  L  R  N  Q  V  F  I  Y  I  Y  I  C  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26119" stop="26106"/>
                    <exon start="24990" stop="24498"/>
                    <exon start="24179" stop="24036"/>
                    <exon start="23224" stop="22984"/>
                    <exon start="21944" stop="21444"/>
                    <exon start="20477" stop="20053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1815</number_coding_nucleotides>
                  <number_encoded_amino_acids>605</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AACVRNMDRARLNKRTHCSGSTPSEESALDLEKYCCSYSNLPSLSPPTLQPYASAGQHSESNAAYFSWPSRLNDAAEERANYFGNLQKGVLPETLGRLPEGQRATTLLDLMTIRASHSKLLRCYSLGTAIGFRIRRGVLTDIPAILVFVSRKVHKQWLSPIQCLPTALEGPGGVWCEVDVVEFSYFGAPEPTPKEQLYTEIVDDLRGSDPYIGSGSQVASQETYGTLGAIVRSLSGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGSVERATSFIRDDLWYGIFAGINPETFVRADGAFIPFTDDFDMTSVTTSVKGIGEIGDVKIIDLQSPISSLIGKQVTKVGRSSGLTTGTVLAYALEYNDEKGICFLTDFLVNGENQQTFDLEGDSGSLIVLKGENGEKPRPIGIIWGGTANRGRLKLKVGQSPENWTSGVDLGRLLNFLELDIITKDEALKVAVQEQRAASATMVGSTAGDSSPPDIMLPKDKIEPLGLHIQQIPLEDGIGGPDINSSPVEATFNLEESGINFDASVEHQFIPSFNGQPPANQDDHRDKSAYENLSALRKGSDEDISFSLQLGGHESKRRRSEPPPSADEPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26090" e_stop="25536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="26090" e_stop="25536" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26090" stop="25536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</gDNA_template>
            <first_frame> F  F  F  L  S  K  N  P  S  L  L  R  L  I  F  L  F  S  L  S  L  L  H  A  E  I  S  S  H  A  H  V  F  F  L  N  F  P  G  P  H  *  F  C  S  L  N  L  Y  C  A  Q  S  L  S  K  *  V  L  F  Q  Y  Y  C  I  Y  Y  P  F  F  L  S  S  V  S  F  H  F  S  C  S  W  F  C  C  F  S  L  V  I  Y  V  W  L  R  T  F  C  F  Y  F  R  C  W  R  N  R  I  Y  W  T  S  P  S  L  G  L  K  H  S  Y  *  H  I  V  D  *  L  W  L  L  L  N  L  L  S  I  S  V  E  K  D  T  C  F  L  R  A  M  L  I  V  E  A  V  L  S  S  Y  E  V  H  S  F  R  F  *  S  S  *  E  K  *  C  D  G  *  Y  C  C  K  L  W  L  T </first_frame>
            <second_frame>  F  F  S  S  R  R  I  H  H  Y  C  D  *  S  S  F  F  H  F  L  F  F  M  Q  R  Y  L  H  T  P  M  F  F  F  *  I  F  Q  D  P  I  N  F  V  P  S  I  C  T  V  H  N  R  Y  Q  N  K  C  F  F  N  I  T  V  F  I  I  R  F  S  S  Q  V  F  L  F  T  F  P  V  P  G  F  V  A  F  P  W  L  Y  M  F  G  *  E  L  F  V  F  I  S  V  V  G  E  I  G  Y  I  G  P  H  L  V  W  D  *  S  I  V  I  D  I  L  L  I  D  Y  G  C  C  *  T  Y  Y  L  F  L  L  R  K  I  P  V  F  L  G  P  C  *  L  L  R  Q  F  Y  H  L  M  K  F  I  L  S  D  F  K  V  A  E  R  N  D  V  M  D  N  I  V  V  S  C  G  *   </second_frame>
            <third_frame>   F  F  P  L  E  E  S  I  T  I  A  I  D  L  P  F  F  T  F  S  S  S  C  R  D  I  F  T  R  P  C  F  F  F  E  F  S  R  T  P  L  I  L  F  P  Q  F  V  L  C  T  I  V  I  K  I  S  A  F  S  I  L  L  Y  L  L  S  V  F  P  L  K  C  F  F  S  L  F  L  F  L  V  L  L  L  F  L  G  Y  I  C  L  A  E  N  F  L  F  L  F  P  L  L  E  K  *  D  I  L  D  L  T  *  F  G  I  E  A  *  L  L  T  Y  C  *  L  I  M  V  V  V  E  L  I  I  Y  F  C  *  E  R  Y  L  F  S  *  G  H  V  D  C  *  G  S  F  I  I  L  *  S  S  F  F  Q  I  L  K  *  L  R  E  M  M  *  W  I  I  L  L  *  A  V  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26088" stop="25771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPLEESITIAIDLPFFTFSSSCRDIFTRPCFFFEFSRTPLILFPQFVLCTIVIKISAFSILLYLLSVFPLKCFFSLFLFLVLLLFLGYICLAENFLFLFPLLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="27595" PGL_stop="27114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27595" e_stop="27114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="27595" e_stop="27114" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27595" stop="27114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</gDNA_template>
            <first_frame> F  P  S  L  Q  Y  S  S  S  L  Y  H  I  *  V  F  F  *  L  M  K  P  R  R  K  E  E  I  K  R  R  *  R  S  *  I  C  Y  *  G  S  V  R  L  C  Q  G  N  *  E  E  A  H  L  I  V  V  *  G  Q  N  L  Q  E  K  I  F  G  M  W  K  I  I  W  K  I  L  R  Q  F  L  L  A  T  Q  E  G  N  M  S  *  N  Q  N  T  *  A  I  H  Y  *  M  L  *  *  R  N  Q  S  K  S  M  G  K  K  I  I  F  P  L  S  V  K  L  C  F  L  I  I  F  S  G  Y  L  K  M  L  I  L  S  T  L  I  L  I  H  L  R  N  W  L  I  Y  M  L  F  N  V  N  N   </first_frame>
            <second_frame>  F  H  L  C  N  I  H  L  L  Y  I  I  F  K  F  F  F  N  *  *  N  Q  E  G  R  K  K  L  R  E  D  E  E  A  E  F  V  I  E  E  V  *  D  F  V  K  A  T  R  K  K  L  I  L  *  *  F  K  V  K  I  C  K  R  R  F  L  E  C  G  R  *  Y  G  R  F  *  D  N  S  C  W  Q  L  K  K  E  I  C  H  K  I  K  I  L  E  P  S  T  I  E  C  S  N  R  E  I  K  A  K  A  W  G  K  R  S  S  F  R  *  V  *  S  C  A  F  *  S  S  S  L  V  T  *  K  C  *  S  Y  Q  P  *  F  *  F  I  *  G  I  G  *  S  I  C  C  L  M  *  I  I  </second_frame>
            <third_frame>   S  I  S  A  I  F  I  F  S  I  S  Y  L  S  F  F  L  I  N  E  T  K  K  E  G  R  N  *  E  K  M  K  K  L  N  L  L  L  R  K  C  K  T  L  S  R  Q  L  G  R  S  S  S  Y  S  S  L  R  S  K  S  A  R  E  D  F  W  N  V  E  D  N  M  E  D  F  E  T  I  L  V  G  N  S  R  R  K  Y  V  I  K  S  K  Y  L  S  H  P  L  L  N  A  L  I  E  K  S  K  Q  K  H  G  E  K  D  H  L  S  V  K  C  E  V  V  L  F  D  H  L  L  W  L  L  E  N  A  D  P  I  N  L  N  S  D  S  F  E  E  L  A  D  L  Y  V  V  *  C  E  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27509" stop="27126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMKKLNLLLRKCKTLSRQLGRSSSYSSLRSKSAREDFWNVEDNMEDFETILVGNSRRKYVIKSKYLSHPLLNALIEKSKQKHGEKDHLSVKCEVVLFDHLLWLLENADPINLNSDSFEELADLYVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="37386" PGL_stop="28858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37386" e_stop="36977"/>
            <exon e_start="35991" e_stop="35803"/>
            <exon e_start="35676" e_stop="35623"/>
            <exon e_start="34315" e_stop="34205"/>
            <exon e_start="33828" e_stop="33766"/>
            <exon e_start="33617" e_stop="33363"/>
            <exon e_start="32861" e_stop="32715"/>
            <exon e_start="32609" e_stop="32582"/>
            <exon e_start="31686" e_stop="31616"/>
            <exon e_start="30362" e_stop="30303"/>
            <exon e_start="29471" e_stop="29029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.914" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="37386" e_stop="36977" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.914">
            <gDNA_intron_boundary i_start="36976" i_stop="35992" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35991" e_stop="35803" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35802" i_stop="35677" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35676" e_stop="35623" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35622" i_stop="34316" i_length="1307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34315" e_stop="34205" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34204" i_stop="33829" i_length="376"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33828" e_stop="33766" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33765" i_stop="33618" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33617" e_stop="33363" e_length="255"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="33362" i_stop="32862" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32861" e_stop="32715" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.803" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32714" i_stop="32610" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32609" e_stop="32582" e_length="28"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32581" i_stop="31687" i_length="895"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31686" e_stop="31616" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31615" i_stop="30363" i_length="1253"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30362" e_stop="30303" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="30302" i_stop="29472" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="29471" e_stop="29029" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37386" stop="36977"/>
              <exon start="35991" stop="35803"/>
              <exon start="35676" stop="35623"/>
              <exon start="34315" stop="34205"/>
              <exon start="33828" stop="33766"/>
              <exon start="33617" stop="33363"/>
              <exon start="32861" stop="32715"/>
              <exon start="32609" stop="32582"/>
              <exon start="31686" stop="31616"/>
              <exon start="30362" stop="30303"/>
              <exon start="29471" stop="29029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC : GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG : GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG : GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG : GAAACCAAAGCATGGACCATCCTCACAG : GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG : GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG : TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTA</gDNA_template>
            <first_frame> L  F  H  F  P  K  F  L  G  S  N  T  I  L  V  Q  L  F  G  *  F  S  N  L  H  V  A  S  S  L  S  *  T  R  E  I  F  V  V  V  A  R  R  *  I  A  A  T  L  C  V  P  L  N  K  H  F  N  L  L  V  V  K  W  R  E  W  L  A  L  S  F  F  L  P  W  Q  F  R  S  S  L  L  S  S  M  V  L  L  T  S  G  Y  D  S  Q  N  L  R  I  L  W  Y  S  S  K  G  A  S  P  S  L  R  *  A  *  V  C  E  L  A  S  L  A  F  L  M  S  A  S  P  R  C  S  T  P  S :   L  R  M  E  R  L  R  L  L  I  F  L  F  A  Q  *  S  Q  M  *  G  *  S  L  S  L  I  H  V  S  M  F  F  L  I  *  A  N  P  N  E  R  S  R  L  R  *  S  L  L  I  L  L  D  L  *  R  E  P  V  K  G  R :   A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   R  K  Q  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R :   L  S  L  S  Y  L  N  F  L  *  K  K  E  *  N  I  *  N  R  L  V  S  M  K  V  A  L  E  I  S  S  E  K  L  M  V  S  *  G  C  V  H  T  S  L  L  A  R  R :   K  P  K  H  G  P  S  S  Q  :  E  *  L  L  L  K  Q  L  G  L  F  T  P  T  L  K  R  A  S  S  G  Q  R  R :   L  L  T  M  T  L  F  L  L  V  L  L  Q  L  Q  G  R  K  D  C :   *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  </first_frame>
            <second_frame>  C  F  I  F  P  N  F  W  A  Q  I  Q  F  W  C  N  Y  L  G  N  F  L  I  Y  M  *  R  R  R  *  V  K  P  E  K  Y  L  *  L  *  H  G  D  R  *  P  Q  R  C  V  Y  H  S  I  S  T  S  T  C  *  W  *  N  G  E  N  G  L  L  S  A  S  S  F  H  G  N  S  A  Q  V  F  F  P  Q  W  F  F  S  P  V  V  T  T  L  R  I  Y  A  S  C  G  T  H  Q  K  A  L  L  R  R  *  D  K  H  E  F  A  S  W  H  R  W  P  S  *  C  R  Q  V  H  A  V  Q  R  R   : R  *  E  W  K  G  S  G  C  *  F  S  F  L  H  N  R  A  K  C  R  D  S  R  C  P  *  Y  T  S  P  C  S  F  *  Y  K  Q  I  Q  T  S  G  P  G  F  D  R  V  C  *  Y  C  W  T  C  K  G  S  Q  S  R  G   : G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : G  G  S  R  K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A   : G  *  V  *  A  I  *  T  S  F  R  R  K  N  R  I  F  E  I  A  W  C  Q  *  K  W  P  W  K  S  H  Q  R  N  L  W  S  P  R  V  A  Y  I  L  H  F  W  R  E   : G  N  Q  S  M  D  H  P  H  R :   N  D  C  S  S  S  S  W  G  Y  S  L  R  L  *  K  G  L  H  Q  G  R  D   : G  C  L  R  *  L  C  F  C  W  F  F  C  S  C  K  G  E  R  T   : V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V </second_frame>
            <third_frame>   V  S  F  S  Q  I  F  G  L  K  Y  N  F  G  A  I  I  W  V  I  F  *  F  T  C  S  V  V  A  E  L  N  P  R  N  I  C  S  C  S  T  A  I  D  S  R  N  A  V  C  T  T  Q  *  A  L  Q  L  A  S  G  K  M  A  R  M  A  C  S  Q  L  L  P  S  M  A  I  P  L  K  S  S  F  L  N  G  S  S  H  Q  W  L  R  L  S  E  S  T  H  P  V  V  L  I  K  R  R  F  S  V  A  K  I  S  M  S  L  R  A  G  I  V  G  L  P  N  V  G  K  S  T  L  F  N  A  V  :  V  E  N  G  K  A  Q  A  A  N  F  P  F  C  T  I  E  P  N  V  G  I  V  A  V  P  D  T  R  L  H  V  L  S  D  I  S  K  S  K  R  A  V  P  A  S  I  E  F  V  D  I  A  G  L  V  K  G  A  S  Q  G  E  :  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  E  E  A  E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  :  V  E  S  E  L  S  E  L  P  L  E  E  R  I  E  Y  L  K  S  L  G  V  N  E  S  G  L  G  N  L  I  R  E  T  Y  G  L  L  G  L  R  T  Y  F  T  S  G  E  K  :  E  T  K  A  W  T  I  L  T   : G  M  T  A  P  Q  A  A  G  V  I  H  S  D  F  E  K  G  F  I  R  A  E  T  :  V  A  Y  D  D  F  V  S  A  G  S  F  A  A  A  R  E  K  G  L  :  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37222" stop="36977"/>
                    <exon start="35991" stop="35803"/>
                    <exon start="35676" stop="35623"/>
                    <exon start="34315" stop="34205"/>
                    <exon start="33828" stop="33766"/>
                    <exon start="33617" stop="33363"/>
                    <exon start="32861" stop="32715"/>
                    <exon start="32609" stop="32582"/>
                    <exon start="31686" stop="31616"/>
                    <exon start="30362" stop="30303"/>
                    <exon start="29471" stop="29403"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLASGKMARMACSQLLPSMAIPLKSSFLNGSSHQWLRLSESTHPVVLIKRRFSVAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDTRLHVLSDISKSKRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKEEAEKSALEKIQQALLDGKPARSVSLSEFEKDAITQLCLLTMKPVIFVANVAESEVAEPENNPHVKEVIKKAAELNSGVVTISAQVESELSELPLEERIEYLKSLGVNESGLGNLIRETYGLLGLRTYFTSGEKETKAWTILTGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVSAGSFAAAREKGLLRLEGKDYVVQEGDIMLFRFNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30043" e_stop="28858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="30043" e_stop="28858" e_length="1186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30043" stop="28858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</gDNA_template>
            <first_frame> Y  L  K  C  L  E  E  S  V  K  T  *  D  S  *  L  Q  C  N  F  K  N  R  *  I  F  K  V  T  V  N  K  L  N  I  S  I  L  A  V  K  K  V  Y  F  K  K  K  T  L  K  I  T  L  E  S  I  F  G  L  *  A  H  A  V  V  T  L  K  Y  L  P  E  A  K  S  L  A  K  H  K  *  R  I  H  G  C  F  W  C  H  F  L  I  I  V  N  W  N  L  F  K  F  F  S  E  P  L  S  S  Q  *  P  S  Y  F  G  S  S  T  S  K  L  N  V  H  C  L  P  Y  P  Q  I  V  M  R  L  L  I  S  C  N  F  Y  *  *  V  V  F  F  H  K  D  N  Y  L  C  S  R  M  *  T  V  L  L  C  E  H  *  V  Y  *  P  V  Q  T  R  E  *  I  K  L  V  T  G  F  I  C  V  C  S  *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  R  T  F  V  S  L  M  S  S  E  L  S  K  Q  S  A  F  I  *  F  Y  S  L  K  A  *  L  H  K  F  L  I  A  H  F  S  C  *  F  H  L  C  E  S  I  N  K  *  I  L  E  A  *  P  N  K  D  </first_frame>
            <second_frame>  T  *  N  V  S  R  N  Q  L  K  L  K  T  R  D  C  S  V  I  S  K  I  D  K  Y  L  K  *  R  *  I  S  *  I  F  Q  F  *  L  L  K  K  F  I  L  K  K  K  P  L  K  *  P  *  S  L  S  L  A  C  K  H  M  Q  W  L  H  *  N  T  F  P  K  Q  K  A  *  P  N  T  N  K  E  S  M  V  V  F  G  V  I  S  *  L  L  S  I  G  T  F  L  N  F  L  V  N  H  Y  H  L  N  N  L  L  T  L  A  P  A  L  Q  N  *  M  F  I  A  S  P  I  P  K  L  *  *  G  C  *  S  H  V  T  F  T  S  K  *  F  S  F  T  K  I  I  T  C  V  V  E  C  K  R  C  F  Y  V  S  T  K  S  T  D  P  C  K  Q  E  N  R  S  S  W  L  Q  D  L  S  V  Y  A  V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V  E  L  L  S  V  *  *  V  L  N  C  P  N  S  P  H  S  Y  N  S  I  A  *  K  L  S  C  I  N  F  S  L  L  I  F  L  V  D  F  I  C  V  R  A  *  I  N  R  S  W  K  L  D  Q  T  R  I </second_frame>
            <third_frame>   P  E  M  S  R  G  I  S  *  N  L  R  L  V  I  A  V  *  F  Q  K  *  I  N  I  *  S  N  G  K  *  A  K  Y  F  N  F  S  C  *  K  S  L  F  *  K  K  N  P  *  N  N  L  R  V  Y  L  W  L  V  S  T  C  S  G  Y  I  K  I  P  S  R  S  K  K  L  S  Q  T  Q  I  K  N  P  W  L  F  L  V  S  F  P  D  Y  C  Q  L  E  P  F  *  I  F  *  *  T  I  I  I  S  I  T  F  L  L  W  L  Q  H  F  K  I  K  C  S  L  P  P  L  S  P  N  C  N  E  V  A  N  L  M  *  L  L  L  V  S  S  F  L  S  Q  R  *  L  L  V  *  *  N  V  N  G  A  S  M  *  A  L  S  L  L  T  R  A  N  K  R  I  D  Q  A  G  Y  R  I  Y  L  C  M  Q  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K  *  N  F  C  Q  F  D  E  F  *  I  V  Q  T  V  R  I  H  I  I  L  *  L  E  S  L  A  A  *  I  S  H  C  S  F  F  L  L  I  S  F  V  *  E  H  K  *  I  D  L  G  S  L  T  K  Q  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29601" stop="29296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFTKIITCVVECKRCFYVSTKSTDPCKQENRSSWLQDLSVYAVEVRRKRLCCARRGYNAVPVQCLIEKQLVKEISRIFMLCSRLFEPFRFLRQQILLQEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="50118" PGL_stop="52454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50118" e_stop="50290"/>
            <exon e_start="50379" e_stop="50564"/>
            <exon e_start="51310" e_stop="51489"/>
            <exon e_start="52234" e_stop="52454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.124" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50118" e_stop="50290" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50291" i_stop="50378" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50379" e_stop="50564" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.729" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50565" i_stop="51309" i_length="745"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51310" e_stop="51489" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.124">
            <gDNA_intron_boundary i_start="51490" i_stop="52233" i_length="744"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="52234" e_stop="52454" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50118" stop="50290"/>
              <exon start="50379" stop="50564"/>
              <exon start="51310" stop="51489"/>
              <exon start="52234" stop="52454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG : ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG : GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG : AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</gDNA_template>
            <first_frame> *  H  S  *  N  R  A  T  V  L  L  Y  A  E  E  L  A  R  *  L  L  A  E  E  V  *  F  L  H  S  R  R  F  Q  M  M  Q  R  S  F  S  Y  A  Q  E  T  P  F  L  F  L  A  P  P  Q  A  Y  R :   L  L  N  W  K  V  I  G  D  W  *  H  R  W  W  *  Y  H  L  L  L  R  Q  A  N  Y  C  A  T  A  G  L  H  L  R  M  V  L  L  N  I  G  T  F  P  C  R  S  *  *  E  V  L  M  L  S  C  P  F  T  Q  W :   *  F  Q  V  Y  H  Q  N  S  E  R  V  A  K  S  L  L  I  F  L  H  M  C  L  S  *  C  *  K  N  S  W  E  G  A  V  L  Y  G  G  R  *  G  S  V  T  *  L  N  V  L  W  L  V  E  *  L  W  L  R :   V  K  T  H  Y  L  *  H  *  A  A  L  E  D  T  W  A  S  V  T  S  A  S  F  A  F  G  K  Y  Q  L  K  I  L  I  I  Q  C  F  R  T  S  D  Y  I  I  R  K  P  *  A  L  *  L  F  I  Q  Q  I  E  *  F  Q  L  E  M  *  Q  E  G  S  *  Y  </first_frame>
            <second_frame>  N  T  H  K  T  E  P  L  F  F  F  T  Q  R  S  *  Q  D  D  Y  W  R  K  K  F  D  F  F  T  A  G  V  F  K  *  C  K  E  A  S  R  M  H  R  K  H  R  F  Y  F  *  H  L  H  R  L  T   : D  C  *  I  G  R  S  *  G  I  G  N  I  G  G  G  S  T  I  Y  Y  S  G  R  Q  T  I  V  L  L  L  D  F  I  *  G  W  Y  Y  *  I  L  G  L  F  R  A  G  A  N  E  K  Y  *  C  *  V  A  H  L  L  N   : G  N  S  R  F  I  I  R  T  Q  R  E  *  R  K  A  F  *  S  F  C  I  C  V  C  H  S  V  E  R  T  A  G  R  E  L  C  F  M  V  A  D  K  E  V  *  L  N  *  M  Y  F  G  W  W  S  D  S  G  *   : E  *  K  R  T  I  Y  N  I  K  L  L  W  K  I  H  G  R  L  *  Q  A  Q  A  S  H  L  G  N  T  N  *  R  F  *  S  F  S  A  S  E  H  Q  I  T  S  Y  E  N  P  E  H  S  S  F  S  S  N  R  *  N  S  F  S  W  R  C  N  R  K  D  L  N  M </second_frame>
            <third_frame>   T  L  I  K  Q  S  H  C  S  S  L  R  R  G  A  S  K  M  I  T  G  G  R  S  L  I  S  S  Q  P  A  F  S  N  D  A  K  K  L  L  V  C  T  G  N  T  V  S  I  F  S  T  S  T  G  L  Q  :  I  A  E  L  E  G  H  R  G  L  V  T  S  V  V  V  V  P  S  T  T  P  A  G  K  L  L  C  Y  C  W  T  S  S  E  D  G  T  I  K  Y  W  D  F  S  V  P  E  L  M  R  S  I  D  V  K  L  P  I  Y  S  M  :  V  I  P  G  L  S  S  E  L  R  E  S  S  E  K  P  S  D  L  F  A  Y  V  S  V  I  V  L  K  E  Q  L  G  G  S  C  A  L  W  W  Q  I  R  K  C  N  L  T  K  C  T  L  V  G  G  V  T  L  A  E  :  S  K  N  A  L  S  I  T  L  S  C  S  G  R  Y  M  G  V  C  D  K  R  K  L  R  I  W  E  I  P  T  K  D  S  D  H  S  V  L  Q  N  I  R  L  H  H  T  K  T  L  S  T  L  A  F  H  P  T  D  R  I  V  S  A  G  D  V  T  G  R  I  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50120" stop="50290"/>
                    <exon start="50379" stop="50564"/>
                    <exon start="51310" stop="51489"/>
                    <exon start="52234" stop="52452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIKQSHCSSLRRGASKMITGGRSLISSQPAFSNDAKKLLVCTGNTVSIFSTSTGLQIAELEGHRGLVTSVVVVPSTTPAGKLLCYCWTSSEDGTIKYWDFSVPELMRSIDVKLPIYSMVIPGLSSELRESSEKPSDLFAYVSVIVLKEQLGGSCALWWQIRKCNLTKCTLVGGVTLAESKNALSITLSCSGRYMGVCDKRKLRIWEIPTKDSDHSVLQNIRLHHTKTLSTLAFHPTDRIVSAGDVTGRILI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56680" PGL_stop="60935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56680" e_stop="56716"/>
            <exon e_start="57006" e_stop="57135"/>
            <exon e_start="57525" e_stop="57657"/>
            <exon e_start="58686" e_stop="58852"/>
            <exon e_start="59291" e_stop="59483"/>
            <exon e_start="60285" e_stop="60935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56680" e_stop="56716" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56717" i_stop="57005" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57006" e_stop="57135" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="57136" i_stop="57524" i_length="389"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57525" e_stop="57657" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57658" i_stop="58685" i_length="1028"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58686" e_stop="58852" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.979">
            <gDNA_intron_boundary i_start="58853" i_stop="59290" i_length="438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59291" e_stop="59483" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59484" i_stop="60284" i_length="801"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="60285" e_stop="60935" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56680" stop="56716"/>
              <exon start="57006" stop="57135"/>
              <exon start="57525" stop="57657"/>
              <exon start="58686" stop="58852"/>
              <exon start="59291" stop="59483"/>
              <exon start="60285" stop="60935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA : GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG : CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG : CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG : GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG : GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATAAGCGCAATAGAGTTGCTATTTAAAT</gDNA_template>
            <first_frame> T  L  D  G  H  A  I  L  L  V  P  I   : R  K  S  Q  *  Q  L  L  P  F  L  E  M  V  L  F  W  L  *  L  Q  K  K  L  L  H  C  G  I  R  R  G  I  F  L  *  L  Q  L  G  R  V  L  S :   Q  S  L  P  *  H  L  L  G  S  Q  S  M  W  *  P  H  R  K  V  L  R  L  K  Y  Q  C  G  A  C  Q  S  C  L  Y  H  G  L  T  N  L  R  *  K  :  L  *  L  V  R  W  M  I  P  C  L  P  S  W  P  F  S  Q  S  Q  L  D  L  *  C  L  M  K  P  Q  L  W  M  A  M  E  *  S  C  Y  S  G  P  Q  I  M  F  P  *  G  S  G  L  *  E  R :   Q  K  V  L  H  L  L  S  F  A  E  V  L  S  Q  R  M  M  L  L  M  A  D  Q  C  S  C  Y  *  L  T  S  A  L  I  M  N  I  C  F  L  I  H  S  T  A  T  P  I  Y  I  R  *  A  E  E  I  L  L  I  L  R  K  Q  :  G  S  S  D  M  H  L  C  T  G  T  Y  Q  T  L  A  *  R  E  N  K  L  H  R  S  H  Q  Y  H  Q  K  D  I  G  R  R  Y  S  V  D  H  L  T  I  F  L  L  L  L  N  C  V  P  H  S  W  N  H  Y  Y  R  R  V  V  Q  L  S  D  W  Q  *  C  P  V  E  L  C  C  K  A  D  L  L  I  Y  A  H  R  *  N  D  N  I  V  V  R  L  D  P  I  V  A  E  R  E  L  P  D  M  H  M  H  M  H  I  V  I  L  A  R  K  C  E  Q  W  G  R  L  I  I  W  S  K  N  E  P  A  R  S  V  K  A  F  E  F  K  K  K  M  P  *  S  S  G  F  K  I  L  V  A  R  F  D  V  S  S  G  Y  *  I  F  C  S  L  Q  L  I  E  P  A  G  L  S  R  H  T  Q  Y  *  I  D  V  L  F  *  Q  Y  L  V  M  C  C  V  *  L  *  H  L  *  A  Q  *  S  C  Y  L  N </first_frame>
            <second_frame>  R  W  M  D  M  P  F  C  W  F  L  *  :  E  K  A  N  D  S  C  C  L  F  W  R  W  F  C  S  G  C  S  C  R  K  S  Y  Y  I  V  G  S  G  E  E  Y  S  C  S  Y  S  W  G  E  S  *   : A  N  L  F  L  S  I  Y  W  E  V  R  V  C  G  N  H  I  A  R  F  *  G  S  S  I  S  V  E  H  V  K  A  V  C  I  M  V  L  Q  T  *  D  R  S :   C  N  L  C  D  G  *  F  L  V  C  R  P  G  P  S  P  K  A  S  W  T  C  D  V  *  *  S  H  N  S  G  W  R  W  S  D  L  V  I  Q  G  H  R  S  C  S  R  R  D  L  V  C  K  K   : G  K  R  C  F  T  C  F  H  S  R  K  S  *  V  R  G  *  C  Y  *  W  Q  I  S  A  V  A  I  S  L  P  Q  R  *  S  *  I  Y  A  F  *  S  T  R  R  P  H  P  Y  T  *  D  K  P  R  K  S  C  *  S  *  G  N  R :   E  V  R  I  C  I  S  V  R  G  P  T  R  L  *  L  R  E  K  T  S  C  I  D  H  I  S  T  I  R  K  I  L  G  D  A  I  Q  W  T  I  S  Q  S  S  S  S  C  *  I  V  F  H  I  P  G  I  I  T  T  E  E  *  C  S  *  V  I  G  S  S  V  R  L  S  F  V  A  R  Q  T  C  *  S  M  L  I  D  E  T  T  T  L  L  L  G  L  I  P  L  *  P  R  E  S  C  L  T  C  T  C  T  C  T  *  *  Y  *  L  E  S  V  N  S  G  V  D  L  *  S  G  L  R  T  S  Q  P  V  Q  L  K  L  S  S  S  R  K  R  C  P  D  R  V  G  L  K  F  W  *  H  D  L  M  C  R  L  D  I  E  F  F  V  A  C  N  L  L  S  L  Q  G  *  V  G  I  L  N  T  E  *  M  F  F  F  D  N  I  W  S  C  V  V  F  N  Y  N  I  Y  K  R  N  R  V  A  I  *   </second_frame>
            <third_frame>   A  G  W  T  C  H  S  V  G  S  Y  K :   K  K  P  M  T  A  A  A  F  S  G  D  G  S  V  L  A  V  A  A  E  K  V  I  T  L  W  D  P  E  R  N  I  L  V  A  T  V  G  E  S  L  E  :  P  I  S  S  L  A  F  I  G  K  S  E  Y  V  V  T  T  S  Q  G  S  K  A  Q  V  S  V  W  S  M  S  K  L  S  V  S  W  S  Y  K  L  K  I  E   : A  V  T  C  A  M  D  D  S  L  F  A  V  L  A  L  L  P  K  P  V  G  P  V  M  S  N  E  A  T  T  L  D  G  D  G  V  I  L  L  F  R  A  T  D  H  V  P  V  G  I  W  F  V  R  K  :  A  K  G  A  S  L  A  F  I  R  G  S  P  K  S  E  D  D  V  T  D  G  R  S  V  Q  L  L  L  A  Y  L  S  V  D  H  E  Y  M  L  F  D  P  L  D  G  H  T  H  I  H  K  I  S  R  G  N  L  A  D  L  E  E  T   : G  K  F  G  Y  A  S  L  Y  G  D  L  P  D  F  S  L  E  R  K  Q  A  A  S  I  T  S  V  P  S  E  R  Y  W  E  T  L  F  S  G  P  S  H  N  L  P  P  L  A  K  L  C  S  T  F  L  E  S  L  L  Q  K  S  S  A  V  E  *  L  A  V  V  S  G  *  A  L  L  Q  G  R  L  A  N  L  C  S  S  M  K  R  Q  H  C  C  *  A  *  S  H  C  S  R  E  R  A  A  *  H  A  H  A  H  A  H  S  N  T  S  S  K  V  *  T  V  G  S  T  Y  N  L  V  *  E  R  A  S  P  F  S  *  S  F  R  V  Q  E  K  D  A  L  I  E  W  V  *  N  F  G  S  T  I  *  C  V  V  W  I  L  N  F  L  *  L  A  T  Y  *  A  C  R  A  K  *  A  Y  S  I  L  N  R  C  S  F  L  T  I  F  G  H  V  L  C  L  I  I  T  F  I  S  A  I  E  L  L  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56682" stop="56716"/>
                    <exon start="57006" stop="57135"/>
                    <exon start="57525" stop="57657"/>
                    <exon start="58686" stop="58852"/>
                    <exon start="59291" stop="59483"/>
                    <exon start="60285" stop="60487"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGWTCHSVGSYKKKPMTAAAFSGDGSVLAVAAEKVITLWDPERNILVATVGESLEPISSLAFIGKSEYVVTTSQGSKAQVSVWSMSKLSVSWSYKLKIEAVTCAMDDSLFAVLALLPKPVGPVMSNEATTLDGDGVILLFRATDHVPVGIWFVRKAKGASLAFIRGSPKSEDDVTDGRSVQLLLAYLSVDHEYMLFDPLDGHTHIHKISRGNLADLEETGKFGYASLYGDLPDFSLERKQAASITSVPSERYWETLFSGPSHNLPPLAKLCSTFLESLLQKSSAVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="63203" PGL_stop="63712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63203" e_stop="63712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63203" e_stop="63712" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63203" stop="63712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</gDNA_template>
            <first_frame> G  N  V  G  H  A  M  Q  L  V  D  K  M  E  E  Y  G  Y  P  T  N  T  V  T  Y  N  S  L  I  R  G  L  C  M  R  G  N  L  N  K  S  L  Q  F  V  E  K  L  I  Q  K  G  L  V  P  N  A  Y  T  Y  S  I  L  L  E  A  S  Y  K  E  K  G  V  N  E  A  M  L  L  L  D  N  I  I  A  K  G  G  K  P  N  L  V  S  Y  N  V  L  L  T  G  L  C  K  E  G  R  I  D  E  A  K  Q  F  F  R  N  L  P  S  K  G  F  N  P  N  V  V  S  Y  N  I  L  L  R  S  L  C  F  E  G  R  W  E  E  A  N  E  F  L  A  E  M  V  G  E  D  R  S  P  S  I  V  T  Y  N  I  L  I  S </first_frame>
            <second_frame>  E  M  S  V  M  L  C  N  *  L  I  K  W  R  N  M  D  I  Q  Q  I  L  *  L  T  I  L  L  *  E  D  F  V  *  G  G  T  *  T  R  A  C  N  L  S  K  S  *  F  R  K  G  W  Y  Q  M  H  I  R  T  L  Y  C  L  R  L  V  I  K  K  K  G  L  M  K  Q  C  Y  F  *  T  I  L  L  P  R  V  E  S  L  I  W  L  V  T  M  F  S  *  L  G  C  A  K  K  E  E  *  M  K  L  N  N  S  L  E  T  C  H  Q  K  G  L  I  L  T  L  S  A  I  I  S  C  *  G  A  C  V  L  K  D  V  G  R  K  R  M  S  F  W  Q  R  W  L  E  K  I  V  L  H  R  L  *  R  T  I  Y  *  S   </second_frame>
            <third_frame>   K  C  R  S  C  Y  A  I  S  *  *  N  G  G  I  W  I  S  N  K  Y  C  D  L  Q  F  S  Y  K  R  T  L  Y  E  G  E  P  E  Q  E  P  A  I  C  R  K  V  D  S  E  R  V  G  T  K  C  I  Y  V  L  Y  I  A  *  G  *  L  *  R  K  R  G  *  *  S  N  V  T  F  R  Q  Y  Y  C  Q  G  W  K  A  *  F  G  *  L  Q  C  S  L  N  W  A  V  Q  R  R  K  N  R  *  S  *  T  I  L  *  K  L  A  I  K  R  V  *  S  *  R  C  Q  L  *  Y  L  V  E  E  L  V  F  *  R  T  L  G  G  S  E  *  V  S  G  R  D  G  W  R  R  S  F  S  I  D  C  N  V  Q  Y  I  D  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63203" stop="63712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNVGHAMQLVDKMEEYGYPTNTVTYNSLIRGLCMRGNLNKSLQFVEKLIQKGLVPNAYTYSILLEASYKEKGVNEAMLLLDNIIAKGGKPNLVSYNVLLTGLCKEGRIDEAKQFFRNLPSKGFNPNVVSYNILLRSLCFEGRWEEANEFLAEMVGEDRSPSIVTYNILIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64088" PGL_stop="64743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64088" e_stop="64743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="64088" e_stop="64743" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64088" stop="64743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</gDNA_template>
            <first_frame> H  G  F  T  P  D  S  Y  T  Y  S  S  L  I  R  G  L  C  L  E  K  M  L  V  A  A  V  D  V  F  Y  M  M  E  E  N  G  Y  R  P  D  V  D  N  F  N  A  L  V  L  G  L  C  K  S  K  R  T  D  L  S  L  K  V  F  E  D  M  I  S  K  G  Y  M  P  N  E  I  T  Y  T  I  I  V  E  G  I  I  H  E  D  H  K  E  L  A  S  V  V  L  R  E  L  H  R  K  E  V  I  S  R  N  T  V  E  R  L  A  M  Q  Y  E  L  E  D  M  A  V  C  *  S  F  T  K  P  M  A  C  G  H  R  M  R  N  *  Q  R  F  F  I  S  K  C  *  I  H  Q  I  N  K  V  I  L  M  L  Y  V  R  W  *  L  Y  T  T  N  K  P  S  G  *  L  V  F  R  Y  G  S  *  F  I  V  G  F  K  *  V  S  G  E  T  C  Q  F  S  L  A  Y  S  C  Y  S  I  A  V  T  K  K  V   </first_frame>
            <second_frame>  T  D  L  L  Q  T  L  T  P  I  L  H  *  S  E  D  Y  A  W  K  R  C  W  W  L  L  S  M  Y  S  T  *  W  K  K  M  D  I  G  L  M  L  T  I  S  M  R  L  C  L  D  Y  A  N  P  K  E  Q  T  C  H  *  R  Y  L  R  T  *  S  A  K  V  I  C  L  M  R  *  H  I  P  L  *  S  K  A  S  S  M  K  I  T  R  S  L  H  Q  *  S  *  G  N  C  T  G  K  K  *  *  V  E  I  L  L  K  D  L  L  C  N  M  S  L  K  I  W  Q  Y  A  D  L  S  Q  N  Q  W  L  V  V  T  G  *  E  T  N  K  G  S  S  L  A  N  A  K  Y  T  K  *  T  K  L  F  S  C  C  M  S  D  G  N  F  T  Q  L  I  N  L  R  D  N  W  F  S  D  M  V  V  D  S  *  *  A  S  N  R  *  V  V  K  L  V  N  S  H  *  L  T  L  A  T  Q  L  L  L  Q  K  K  L  </second_frame>
            <third_frame>   R  I  Y  S  R  L  L  H  L  F  F  I  D  Q  R  I  M  L  G  K  D  V  G  G  C  C  R  C  I  L  H  D  G  R  K  W  I  *  A  *  C  *  Q  F  Q  C  A  C  A  W  T  M  Q  I  Q  K  N  R  L  V  I  K  G  I  *  G  H  D  Q  Q  R  L  Y  A  *  *  D  N  I  Y  H  Y  S  R  R  H  H  P  *  R  S  Q  G  A  C  I  S  S  P  K  G  T  A  P  E  R  S  N  K  *  K  Y  C  *  K  T  C  Y  A  I  *  A  *  R  Y  G  S  M  L  I  F  H  K  T  N  G  L  W  S  Q  D  E  K  L  T  K  V  L  H  *  Q  M  L  N  T  P  N  K  Q  S  Y  S  H  A  V  C  Q  M  V  T  L  H  N  *  *  T  F  G  I  I  G  F  Q  I  W  *  L  I  H  S  R  L  Q  I  G  E  W  *  N  L  S  I  L  T  S  L  L  L  L  L  N  C  C  Y  K  K  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64088" stop="64477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGFTPDSYTYSSLIRGLCLEKMLVAAVDVFYMMEENGYRPDVDNFNALVLGLCKSKRTDLSLKVFEDMISKGYMPNEITYTIIVEGIIHEDHKELASVVLRELHRKEVISRNTVERLAMQYELEDMAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69048" PGL_stop="72259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69048" e_stop="69288"/>
            <exon e_start="70587" e_stop="70751"/>
            <exon e_start="71039" e_stop="71096"/>
            <exon e_start="72059" e_stop="72259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69048" e_stop="69288" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69289" i_stop="70586" i_length="1298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70587" e_stop="70751" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70752" i_stop="71038" i_length="287"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71039" e_stop="71096" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="71097" i_stop="72058" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72059" e_stop="72259" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69048" stop="69288"/>
              <exon start="70587" stop="70751"/>
              <exon start="71039" stop="71096"/>
              <exon start="72059" stop="72259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG : AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG : TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</gDNA_template>
            <first_frame> *  R  V  P  G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : E  L  D  K  L  L  E  D  A  P  L  P  F  I  M  Q  H  A  A  R  I  S  G  V  R  K  R  I  T  S  L  N  S  L  L  K  S  I  Q  R  R  L  D  N  I  D  H  T  L  S  A  G  L  L  H   : E  K  S  S  G  D  G  G  R  D  H  E  N  H  K  S  S  L  K  S :   S  *  S  K  S  R  R  R  F  K  C  P  S  Q  C  P  *  K  S  P  S  D  C  K  H  L  E  L  I  Q  P  C  G  V  K  G  S  L  M  H  E  V  I  T  H  C  V  L  K  R  C  S  F  T  C  Q  K  I  A  W  F  Q  L  C  A  I   </first_frame>
            <second_frame>  D  E  Y  R  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  S  L  T  S  C  W  K  M  P  H  C  L  L  S  C  S  M  L  P  E  F  L  V  L  G  K  E  L  H  R  *  T  H  F  *  S  L  Y  R  G  V  L  I  I  S  T  T  H  Y  L  L  V  C  Y  M  :  R  S  P  Q  G  M  V  G  E  T  M  R  I  I  S  L  H  *  R   : V  H  D  Q  N  P  G  E  D  S  N  V  L  R  S  A  R  R  N  L  L  L  I  A  S  I  W  N  *  F  S  L  V  V  *  K  V  V  *  C  M  R  L  *  H  T  A  F  *  K  D  V  L  L  P  V  K  K  L  H  G  F  S  S  V  P  Y  </second_frame>
            <third_frame>   T  S  T  G  K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   A  *  Q  A  A  G  R  C  P  I  A  F  Y  H  A  A  C  C  Q  N  F  W  C  *  E  K  N  Y  I  V  E  L  T  F  E  V  Y  T  E  A  S  *  *  Y  R  P  H  I  I  C  W  F  V  T  * :   E  V  L  R  G  W  W  A  R  P  *  E  S  *  V  F  I  E  E  :  F  M  I  K  I  Q  E  K  I  Q  M  S  F  A  V  P  V  E  I  S  F  *  L  Q  A  F  G  T  D  S  A  L  W  C  K  R  *  S  D  A  *  G  Y  N  T  L  R  S  E  K  M  F  F  Y  L  S  K  N  C  M  V  S  A  L  C  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69051" stop="69288"/>
                    <exon start="70587" stop="70751"/>
                    <exon start="71039" stop="71096"/>
                    <exon start="72059" stop="72065"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPGNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGELDKLLEDAPLPFIMQHAARISGVRKRITSLNSLLKSIQRRLDNIDHTLSAGLLHEKSSGDGGRDHENHKSSLKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76604" PGL_stop="76958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76604" e_stop="76958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="76604" e_stop="76958" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76604" stop="76958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</gDNA_template>
            <first_frame> L  F  L  F  I  Y  I  Y  I  P  F  C  N  R  Y  V  N  V  S  S  I  C  M  Y  A  G  N  Y  G  F  S  L  R  *  Q  N  G  Y  V  A  G  E  V  F  G  L  F  S  G  C  E  V  Q  V  I  W  L  V  K  S  K  D  V  I  *  *  G  R  R  S  F  Q  G  C  R  S  *  A  D  E  C  *  K  *  *  G  G  G  I  R  S  R  S  F  E  R  Y  G  R  F  *  V  L  P  *  R  S  G  K  Y  A  A  S  *  *  A  F  F  </first_frame>
            <second_frame>  S  F  F  L  Y  I  Y  I  F  H  S  V  I  V  T  L  T  F  L  L  F  V  C  T  P  E  I  M  A  S  A  C  V  N  K  M  G  M  S  P  E  K  F  L  D  C  S  P  A  A  K  Y  K  S  Y  G  W  L  S  P  R  M  S  F  S  R  D  G  E  A  S  K  V  A  G  A  K  Q  T  S  V  E  N  D  K  V  E  E  L  D  P  E  V  S  K  D  M  G  D  F  E  F  C  L  E  D  P  V  N  M  L  P  A  D  E  L  F  F </second_frame>
            <third_frame>   L  S  F  Y  I  Y  I  Y  S  I  L  *  S  L  R  *  R  F  F  Y  L  Y  V  R  R  K  L  W  L  Q  L  A  L  T  K  W  V  C  R  R  R  S  F  W  I  V  L  R  L  R  S  T  S  H  M  V  G  *  V  Q  G  C  H  L  V  G  T  A  K  L  P  R  L  P  E  L  S  R  R  V  L  K  M  I  R  W  R  N  *  I  Q  K  F  R  K  I  W  A  I  L  S  F  A  L  K  I  R  *  I  C  C  Q  L  M  S  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76605" stop="76958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFLYIYIFHSVIVTLTFLLFVCTPEIMASACVNKMGMSPEKFLDCSPAAKYKSYGWLSPRMSFSRDGEASKVAGAKQTSVENDKVEELDPEVSKDMGDFEFCLEDPVNMLPADELFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="84282" PGL_stop="86302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84282" e_stop="84597"/>
            <exon e_start="84725" e_stop="84820"/>
            <exon e_start="85356" e_stop="85436"/>
            <exon e_start="85707" e_stop="85781"/>
            <exon e_start="86250" e_stop="86302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84282" e_stop="84597" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.958">
            <gDNA_intron_boundary i_start="84598" i_stop="84724" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84725" e_stop="84820" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84821" i_stop="85355" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85356" e_stop="85436" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="85437" i_stop="85706" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85707" e_stop="85781" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.655" acc_prob="0.928">
            <gDNA_intron_boundary i_start="85782" i_stop="86249" i_length="468"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86250" e_stop="86302" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84282" stop="84597"/>
              <exon start="84725" stop="84820"/>
              <exon start="85356" stop="85436"/>
              <exon start="85707" stop="85781"/>
              <exon start="86250" stop="86302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG : GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG : GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG : GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA : GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</gDNA_template>
            <first_frame> N  G  K  T  Q  N  R  Q  N  N  G  *  *  V  Y  I  L  F  W  S  S  G  *  H  I  A  L  L  D  C  L  C  H  F  S  V  A  *  Y  L  W  K  C  I  F  Y  Y  I  *  V  V  F  H  L  V  L  C  *  C  K  S  S  L  H  G  *  R  V  Q  V  F  L  Q  H  C  Q  *  N  P  R  M  D  P  C  N  Y  Q  L  H  C  T  L  S  L  F  Y  R  C  S  C  R  Q  L  F  Q   : G  *  T  M  G  S  C  G  *  R  M  D  G  L  F  T  E  G  V  G  *  K  S  S  P  D  S  F  W  C  G  S   : G  S  L  A  W  L  T  *  R  L  H  T  Y  S  E  V  S  L  S  F  T  *  T  G  *  F  S   : G  I  F  R  N  A  H  S  F  T  K  *  C  F  S  S  R  H  E  S  *  E  K  A  *   : S  G  S  T  F  C  S  G  Q  L  S  R  K  A  S  W  C  P </first_frame>
            <second_frame>  T  V  K  P  R  I  D  K  T  M  V  N  E  Y  T  F  C  F  G  V  V  V  S  I  L  H  C  *  T  V  Y  V  T  S  Q  L  L  D  T  Y  G  N  A  Y  F  I  T  F  K  L  F  F  T  L  F  S  V  S  A  N  L  P  S  M  A  E  E  F  K  Y  S  C  N  T  A  S  E  T  L  E  W  I  H  A  I  I  N  F  I  A  P  Y  R  Y  F  I  D  A  H  V  V  N  F  F  K  :  D  R  L  W  E  A  V  D  K  E  W  M  D  C  L  Q  K  E  S  V  E  N  L  L  R  I  P  S  G  V  V  Q  :  D  H  W  P  G  S  L  K  D  F  I  L  T  L  R  S  L  C  L  S  R  E  Q  A  D  F  Q  :  E  F  S  G  M  H  I  A  S  L  S  N  V  L  A  Q  G  M  N  H  K  K  K  H  E  :  V  E  V  L  S  A  L  V  S  L  V  A  K  Q  V  G  A   </second_frame>
            <third_frame>   R  *  N  P  E  S  T  K  Q  W  L  M  S  I  H  S  V  L  E  *  W  L  A  Y  C  I  V  R  L  S  M  S  L  L  S  C  L  I  L  M  E  M  H  I  L  L  H  L  S  C  F  S  P  C  S  L  L  V  Q  I  F  P  P  W  L  K  S  S  S  I  L  A  T  L  P  V  K  P  *  N  G  S  M  Q  L  S  T  S  L  H  L  I  V  I  L  *  M  L  M  S  S  T  F  S  R :   I  D  Y  G  K  L  W  I  K  N  G  W  I  V  Y  R  R  S  R  L  K  I  F  S  G  F  L  L  V  W  F  R :   I  T  G  L  A  H  L  K  T  S  Y  L  L  *  G  L  F  V  F  H  V  N  R  L  I  F  R :   N  F  Q  E  C  T  *  L  H  *  V  M  F  *  L  K  A  *  I  I  R  K  S  M  K :   W  K  Y  F  L  L  W  S  A  *  S  Q  S  K  L  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84367" stop="84597"/>
                    <exon start="84725" stop="84820"/>
                    <exon start="85356" stop="85436"/>
                    <exon start="85707" stop="85781"/>
                    <exon start="86250" stop="86300"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYVTSQLLDTYGNAYFITFKLFFTLFSVSANLPSMAEEFKYSCNTASETLEWIHAIINFIAPYRYFIDAHVVNFFKDRLWEAVDKEWMDCLQKESVENLLRIPSGVVQDHWPGSLKDFILTLRSLCLSREQADFQEFSGMHIASLSNVLAQGMNHKKKHEVEVLSALVSLVAKQVGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="89171" PGL_stop="91626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89171" e_stop="89257"/>
            <exon e_start="89606" e_stop="89796"/>
            <exon e_start="90518" e_stop="91326"/>
            <exon e_start="91598" e_stop="91626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.793" acc_prob="0.927" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.241" e_score="0.963"/>
          <exon-intron don_prob="0.984" acc_prob="0.322" e_score="0.980"/>
          <exon-only e_score="0.448"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="89171" e_stop="89257" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.793" acc_prob="0.927">
            <gDNA_intron_boundary i_start="89258" i_stop="89605" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="89606" e_stop="89796" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.241">
            <gDNA_intron_boundary i_start="89797" i_stop="90517" i_length="721"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="90518" e_stop="91326" e_length="809"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.322">
            <gDNA_intron_boundary i_start="91327" i_stop="91597" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="0.448">
            <gDNA_exon_boundary e_start="91598" e_stop="91626" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89171" stop="89257"/>
              <exon start="89606" stop="89796"/>
              <exon start="90518" stop="91326"/>
              <exon start="91598" stop="91626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGGTCGTCAGAATCTG : GTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT : GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTTTATATACTGCTGTCTTTTCTCAAGGTGAGAAGACAAGCCCAAGAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTCTGACTACTCAGGGTTCTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCACTGTCCTATGAAGTATTCAAGGACAATAGACAAATGACAG : GAGAGAATGACTTGCAAAATCTTTAAAGA</gDNA_template>
            <first_frame> *  G  V  R  G  K  P  Y  G  A  N  R  I  K  G  S  W  N  P  I  C  I  M  G  G  R  Q  N  L  :  V  N  H  G  R  V  W  R  F  F  M  N  T  L  L  F  R  V  L  I  A  S  L  T  L  W  T  D  A  H  Y  L  Q  N  F  A  S  L  G  *  V  V  Y  I  S  L  I  W  R  I  Q  L  T  V  Q  S  G  G  S  L  N  H  T  L :   S  *  *  D  L  I  G  L  F  V  L  P  W  A  P  F  W  K  L  L  Y  C  L  T  D  C  C  S  S  R  S  M  A  V  I  W  R  Q  A  S  Y  L  F  L  I  L  C  Y  L  R  G  I  W  L  S  *  L  G  K  L  E  S  R  K  F  S  T  V  S  K  N  V  I  Q  H  T  V  L  L  *  F  V  L  R  Y  F  D  R  F  C  V  I  L  F  L  I  N  L  P  *  P  R  E  K  M  S  E  E  R  K  Q  F  A  T  R  N  K  L  Y  Y  Y  R  C  L  F  N  Q  K  K  K  N  R  R  N  R  K  N  F  A  T  R  T  *  L  C  T  W  S  K  Q  K  M  K  L  *  W  *  N  G  I  I  F  I  Y  L  *  M  I  F  G  L  Q  G  V  S  L  H  I  *  S  Q  V  Y  I  L  L  S  F  L  K  V  R  R  Q  A  Q  E  *  E  C  G  Y  Q  L  K  Y  I  S  N  L  L  L  I  *  M  L  V  S  H  S  D  Y  S  G  F  L  *  L  *  Y  C  P  L  F  T  L  G  C  N  V  M  R  N  C  P  F  *  Y  I  S  C  G  G  L  C  P  L  S  Y  E  V  F  K  D  N  R  Q  M  T   : G  E  N  D  L  Q  N  L  *  R </first_frame>
            <second_frame>  R  A  S  G  E  S  L  T  A  P  T  E  S  K  D  P  G  I  Q  F  A  S  W  G  V  V  R  I  W :   *  T  T  G  E  C  G  V  S  S  *  I  L  F  Y  S  E  F  *  *  R  V  *  R  C  G  Q  M  L  T  I  C  K  I  L  R  V  W  V  R  S  F  T  S  P  S  F  G  G  Y  S  L  Q  C  N  L  E  G  V  *  I  I  R   : *  V  N  R  T  L  L  V  S  S  C  C  P  G  P  R  F  G  N  S  Y  T  A  *  P  I  V  A  P  P  G  V  W  Q  *  S  G  G  K  P  L  T  Y  F  *  S  C  V  I  S  E  E  Y  G  Y  H  S  *  E  N  *  K  V  E  N  F  L  Q  S  L  K  M  *  F  N  I  L  C  C  Y  D  L  F  S  D  I  L  T  A  S  V  L  S  F  F  *  *  I  F  L  N  Q  E  K  K  C  Q  K  K  G  S  N  L  R  P  G  T  S  Y  I  I  T  D  V  F  L  T  R  K  R  R  T  E  E  T  G  K  I  L  Q  P  G  P  S  F  V  H  G  P  S  K  K  *  S  S  S  G  E  M  V  L  Y  L  F  I  Y  R  *  Y  L  V  C  K  V  S  L  Y  T  F  D  L  K  F  I  Y  C  C  L  F  S  R  *  E  D  K  P  K  N  E  N  V  V  I  N  *  N  I  Y  P  T  Y  C  *  F  K  C  W  F  H  I  L  T  T  Q  G  S  Y  D  Y  D  I  V  L  Y  S  L  W  D  V  M  S  *  E  I  V  L  F  N  I  *  V  V  E  G  C  V  H  C  P  M  K  Y  S  R  T  I  D  K  *  Q  :  E  R  M  T  C  K  I  F  K   </second_frame>
            <third_frame>   G  R  Q  G  K  A  L  R  R  Q  Q  N  Q  R  I  L  E  S  N  L  H  H  G  G  S  S  E  S   : G  E  P  R  E  S  V  A  F  L  H  E  Y  S  S  I  Q  S  S  N  S  E  S  N  A  V  D  R  C  S  L  F  A  K  F  C  E  S  G  L  G  R  L  H  L  P  H  L  A  D  T  A  Y  S  A  I  W  R  E  S  E  S  Y  A  :  E  L  I  G  P  Y  W  S  L  R  A  A  L  G  P  V  L  E  T  L  I  L  L  D  R  L  L  L  L  Q  E  Y  G  S  D  L  E  A  S  L  L  P  I  F  N  P  V  L  S  P  R  N  M  A  I  I  A  R  K  I  R  K  *  K  I  F  Y  S  L  *  K  C  D  S  T  Y  C  V  A  M  I  C  S  Q  I  F  *  P  L  L  C  Y  P  F  F  N  K  S  S  L  T  K  R  K  N  V  R  R  K  E  A  I  C  D  Q  E  Q  A  I  L  L  Q  M  S  F  *  P  E  K  E  E  Q  K  K  Q  E  K  F  C  N  Q  D  L  A  L  Y  M  V  Q  A  K  N  E  A  L  V  V  K  W  Y  Y  I  Y  L  S  I  D  D  I  W  F  A  R  C  L  F  T  H  L  I  S  S  L  Y  T  A  V  F  S  Q  G  E  K  T  S  P  R  M  R  M  W  L  S  I  E  I  Y  I  Q  P  I  A  N  L  N  V  G  F  T  F  *  L  L  R  V  L  M  I  M  I  L  S  F  I  H  F  G  M  *  C  H  E  K  L  S  F  L  I  Y  K  L  W  R  V  V  S  T  V  L  *  S  I  Q  G  Q  *  T  N  D  R :   R  E  *  L  A  K  S  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89173" stop="89257"/>
                    <exon start="89606" stop="89796"/>
                    <exon start="90518" stop="90706"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRQGKALRRQQNQRILESNLHHGGSSESGEPRESVAFLHEYSSIQSSNSESNAVDRCSLFAKFCESGLGRLHLPHLADTAYSAIWRESESYAELIGPYWSLRAALGPVLETLILLDRLLLLQEYGSDLEASLLPIFNPVLSPRNMAIIARKIRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90896" stop="91180"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEKEEQKKQEKFCNQDLALYMVQAKNEALVVKWYYIYLSIDDIWFARCLFTHLISSLYTAVFSQGEKTSPRMRMWLSIEIYIQPIANLNVGFTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="94231" PGL_stop="94815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94231" e_stop="94815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="94231" e_stop="94815" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94231" stop="94815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACTACACCTGTCAAGATGAACACACCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACTCTGTCATTAAATGGCTCTAATACCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</gDNA_template>
            <first_frame> D  *  S  I  Q  N  F  S  L  K  G  K  P  I  Y  V  K  K  L  W  *  I  K  S  N  K  S  P  P  P  W  P  V  F  L  T  K  *  I  S  P  H  S  S  F  N  L  Q  Q  L  A  S  L  L  L  N  L  L  C  K  I  Y  V  S  T  *  K  T  S  L  K  Q  F  L  Q  Q  N  L  H  Y  C  Q  K  D  C  G  *  N  Y  T  C  Q  D  E  H  T  S  F  *  P  G  P  I  I  D  Y  R  T  T  E  P  D  S  V  I  K  W  L  *  Y  H  L  L  G  S  K  *  A  G  V  N  A  E  A  S  K  A  N  F  E  R  P  R  V  R  R  Q  R  E  I  Y  Q  K  T  Q  R  F  N  V  V  R  S  I  D  L  R  S  Q  R  R  *  A  I  H  Y  K  Y  E  S  T  I  Y  R  E  K  Q  H  Q  P  I  H  S  E  Y  M </first_frame>
            <second_frame>  I  S  Q  S  K  I  F  P  *  K  E  N  L  F  M  L  R  N  Y  G  K  *  N  P  T  N  L  L  P  L  G  L  Y  F  *  Q  N  K  F  L  H  I  L  H  L  I  F  N  N  L  L  L  F  F  L  I  S  F  V  K  F  M  S  Q  H  R  K  P  L  *  N  N  F  S  N  K  I  F  I  T  V  K  K  I  A  A  R  T  T  P  V  K  M  N  T  P  L  S  N  L  V  Q  *  S  I  I  E  P  L  N  L  T  L  S  L  N  G  S  N  T  T  C  *  D  R  N  K  Q  V  *  M  R  K  L  A  K  Q  T  S  K  D  H  E  *  E  D  N  E  K  Y  T  K  R  H  K  D  L  T  W  F  G  Q  S  T  Y  V  H  K  G  D  E  Q  S  T  I  N  M  R  V  Q  Y  T  E  R  N  N  I  N  Q  F  I  R  N  I   </second_frame>
            <third_frame>   L  V  N  P  K  F  F  P  K  R  K  T  Y  L  C  *  E  I  M  V  N  K  I  Q  Q  I  S  S  P  L  A  C  I  S  D  K  I  N  F  S  T  F  F  I  *  S  S  T  T  C  F  S  S  S  *  S  P  L  *  N  L  C  L  N  I  E  N  L  S  E  T  I  S  P  T  K  S  S  L  L  S  K  R  L  R  L  E  L  H  L  S  R  *  T  H  L  F  L  T  W  S  N  N  R  L  S  N  H  *  T  *  L  C  H  *  M  A  L  I  P  L  V  R  I  E  I  S  R  C  K  C  G  S  *  Q  S  K  L  R  K  T  T  S  K  K  T  T  R  N  I  P  K  D  T  K  I  *  R  G  S  V  N  R  P  T  F  T  K  E  M  S  N  P  L  *  I  *  E  Y  N  I  Q  R  E  T  T  S  T  N  S  F  G  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0215P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="98935" PGL_stop="103747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98935" e_stop="99679"/>
            <exon e_start="101694" e_stop="101965"/>
            <exon e_start="103558" e_stop="103747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98935" e_stop="99679" e_length="745"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="99680" i_stop="101693" i_length="2014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101694" e_stop="101965" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101966" i_stop="103557" i_length="1592"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103558" e_stop="103747" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98935" stop="99679"/>
              <exon start="101694" stop="101965"/>
              <exon start="103558" stop="103747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG : AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG : GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</gDNA_template>
            <first_frame> F  S  F  Y  Y  I  L  K  I  *  H  I  I  F  *  V  L  Y  *  E  I  K  L  V  C  L  L  K  L  K  G  R  C  W  M  L  F  T  L  L  S  *  F  *  N  S  L  F  I  F  V  I  H  F  Y  *  L  A  T  K  *  P  K  Y  H  D  I  Y  K  F  I  Q  N  N  F  Y  Y  I  L  Y  I  P  K  L  F  I  F  F  Y  K  F  C  V  *  S  T  *  I  H  I  T  F  S  V  S  F  I  K  Y  D  Y  I  D  Q  K  R  N  F  L  L  N  F  I  S  V  Q  N  S  V  I  *  N  N  I  E  I  S  H  G  T  I  I  T  S  A  Y  I  *  M  *  *  S  T  I  L  V  M  L  I  G  K  Y  F  Y  Q  P  P  P  L  G  L  *  Y  T  *  I  S  S  F  F  S  F  L  F  K  M  S  N  N  N  S  L  S  M  V  E  S  K  L  P  P  G  F  R  F  H  P  R  D  E  E  L  I  C  D  Y  L  M  K  K  V  D  Q  Q  S  E  Y  Q  Q  Q  Y  P  L  L  I  E  V  D  L  N  K  S  E  P  W  E  I  P   : E  V  A  C  V  G  G  K  E  W  Y  F  Y  S  Q  R  D  R  K  Y  A  T  G  L  R  T  N  R  A  T  V  S  G  Y  W  K  A  T  G  K  D  R  A  I  I  R  K  G  S  L  V  G  M  R  K  T  L  V  F  Y  Q  G  R  A  P  K  G  R  K  S  D  W  V  M  H  E  F  R  L  E  L  P  I  R  P  Q  I  S  S  I  K  :  E  D  W  V  L  C  R  V  F  H  K  K  K  E  L  L  A  T  K  Q  E  I  G  S  N  N  I  Y  Y  D  N  D  T  I  S  C  S  S  L  P  P  L  M  D  P  Y  I  T  F  D  Q  T  N  P  N  N  N  N  M  N  M  N  E  </first_frame>
            <second_frame>  F  P  F  T  I  F  *  K  Y  D  T  *  Y  F  K  Y  Y  I  K  K  *  N  *  F  V  F  L  N  S  R  V  V  V  G  C  F  L  H  Y  Y  L  N  F  K  I  L  F  L  F  L  *  Y  T  F  I  S  *  P  P  N  N  Q  N  I  T  I  Y  I  N  L  F  K  I  I  S  I  I  F  Y  I  F  Q  N  F  S  F  F  F  I  N  F  V  S  S  Q  H  E  Y  I  *  L  F  Q  *  V  L  L  N  T  I  I  *  I  K  K  E  I  F  Y  *  I  L  F  Q  F  K  I  A  *  F  K  I  I  L  K  L  A  M  G  L  *  *  L  V  L  I  Y  R  C  S  R  V  P  F  *  *  C  *  *  G  N  I  F  I  N  H  L  P  L  D  F  D  T  L  K  S  P  L  S  F  H  F  S  S  K  *  V  T  T  T  A  *  A  W  W  N  P  N  Y  H  Q  D  L  D  S  I  Q  E  M  K  N  L  F  V  I  T  *  *  R  K  L  I  N  N  P  N  I  N  N  N  T  L  F  S  *  K  L  T  S  I  N  L  N  H  G  K  F  L  :  K  W  H  V  L  E  G  R  S  G  T  S  T  A  N  V  T  E  N  T  R  R  G  S  E  Q  T  E  P  P  Y  L  V  T  G  K  P  P  E  K  I  V  Q  S  S  E  K  E  V  *  *  E  *  E  K  P  *  F  S  I  K  G  E  P  Q  K  E  E  K  V  T  G  L  C  M  N  S  A  *  N  F  P  F  V  L  K  F  L  L  S  R :   R  I  G  Y  Y  A  E  Y  F  T  R  R  R  N  Y  L  L  Q  S  K  K  L  E  A  T  I  Y  T  T  I  T  I  Q  *  V  V  H  L  Y  H  H  *  W  I  L  T  L  L  S  T  K  Q  T  L  T  T  I  I  *  I  *  M  N </second_frame>
            <third_frame>   F  L  L  L  Y  S  K  N  M  T  H  N  I  L  S  T  I  L  R  N  K  I  S  L  S  S  *  T  Q  G  S  L  L  D  A  F  Y  T  I  I  L  I  L  K  F  S  F  Y  F  C  D  T  L  L  L  A  S  H  Q  I  T  K  I  S  R  Y  I  *  I  Y  S  K  *  F  L  L  Y  F  I  Y  S  K  T  F  H  F  F  L  *  I  L  C  L  V  N  M  N  T  Y  N  F  F  S  K  F  Y  *  I  R  L  Y  R  S  K  K  K  F  F  I  K  F  Y  F  S  S  K  *  R  N  L  K  *  Y  *  N  *  P  W  D  Y  N  N  *  C  L  Y  I  D  V  V  E  Y  H  F  S  D  V  N  R  E  I  F  L  S  T  T  S  P  W  T  L  I  H  L  N  L  L  F  L  F  I  S  L  Q  N  E  *  Q  Q  Q  L  E  H  G  G  I  Q  I  T  T  R  I  *  I  P  S  K  R  *  R  T  Y  L  *  L  L  N  E  E  S  *  S  T  I  R  I  S  T  T  I  P  S  S  H  R  S  *  P  Q  *  I  *  T  M  G  N  S  * :   S  G  M  C  W  R  E  G  V  V  L  L  Q  P  T  *  P  K  I  R  D  G  A  P  N  K  Q  S  H  R  I  W  L  L  E  S  H  R  K  R  S  C  N  H  Q  K  R  K  S  S  R  N  E  K  N  P  S  F  L  S  R  E  S  P  K  R  K  K  K  *  L  G  Y  A  *  I  P  P  R  T  S  H  S  S  S  N  F  F  Y  Q   : G  G  L  G  I  M  P  S  I  S  Q  E  E  G  I  T  C  Y  K  A  R  N  W  K  Q  Q  Y  I  L  R  *  R  Y  N  K  L  F  I  S  T  T  I  N  G  S  L  H  Y  F  R  P  N  K  P  *  Q  Q  *  Y  E  Y  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99460" stop="99679"/>
                    <exon start="101694" stop="101965"/>
                    <exon start="103558" stop="103746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSFFSFLFKMSNNNSLSMVESKLPPGFRFHPRDEELICDYLMKKVDQQSEYQQQYPLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAIIRKGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLELPIRPQISSIKEDWVLCRVFHKKKELLATKQEIGSNNIYYDNDTISCSSLPPLMDPYITFDQTNPNNNNMNMNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="103781" PGL_stop="104329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103781" e_stop="104329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="103781" e_stop="104329" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103781" stop="104329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</gDNA_template>
            <first_frame> S  P  L  T  K  L  S  L  P  I  A  T  T  S  P  P  P  Q  P  P  S  D  L  P  H  T  V  V  F  Q  L  I  L  E  I  T  *  M  P  L  Q  H  P  L  R  V  I  I  T  K  *  L  E  L  F  *  V  I  *  V  P  R  I  I  L  L  W  K  V  I  I  A  I  T  T  I  L  S  I  L  P  K  I  *  K  E  E  I  H  L  A  L  V  K  E  V  L  K  L  A  F  Y  L  R  W  D  I  L  Q  C  G  T  I  I  D  F  *  E  K  I  F  Y  L  D  V  *  Y  N  I  *  Q  V  L  F  *  L  L  V  L  Y  C  N  L  R  I  Y  I  Y  N  Y  T  S  *  I  N  F  Q  C  M  *  F  Q  *  *  Y  F  P  S  G  *  C  I  *  L  S  P  R  *  I  G  I  L  R </first_frame>
            <second_frame>  H  P  *  P  N  F  H  F  P  *  P  P  P  P  L  R  H  N  R  H  R  I  Y  R  I  R  W  F  S  S  *  Y  W  K  L  P  K  C  H  C  N  I  L  Y  V  *  *  *  Q  S  N  *  S  C  F  K  S  F  E  Y  Q  E  *  Y  Y  Y  G  R  *  *  *  Q  *  Q  Q  Y  Y  Q  S  C  P  K  Y  K  R  R  K  F  T  *  L  W  *  R  K  F  *  N  *  L  F  I  *  G  G  I  S  Y  N  V  E  Q  L  L  I  F  E  R  K  Y  S  T  *  M  C  D  I  I  Y  D  K  S  C  F  S  C  *  Y  Y  I  V  I  L  E  Y  I  Y  I  T  I  L  A  R  L  I  S  N  A  C  N  S  N  N  D  T  F  L  V  V  N  V  Y  N  C  L  L  D  R  L  E  F  S   </second_frame>
            <third_frame>   T  P  N  Q  T  F  T  S  H  S  H  H  L  P  S  A  T  T  A  I  G  S  T  A  Y  G  G  F  P  A  D  I  G  N  Y  L  N  A  T  A  T  S  S  T  C  D  N  N  K  V  I  R  A  V  L  S  H  L  S  T  K  N  N  I  I  M  E  G  N  N  S  N  N  N  N  I  I  N  P  A  Q  N  I  K  G  G  N  S  P  S  F  G  E  G  S  S  E  T  S  F  L  S  E  V  G  Y  P  T  M  W  N  N  Y  *  F  L  R  E  N  I  L  L  R  C  V  I  *  Y  M  T  S  L  V  L  V  A  S  I  I  L  *  S  *  N  I  Y  I  *  L  Y  *  L  D  *  F  P  M  H  V  I  P  I  M  I  L  S  *  W  L  M  Y  I  I  V  S  *  I  D  W  N  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103783" stop="104124"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPNQTFTSHSHHLPSATTAIGSTAYGGFPADIGNYLNATATSSTCDNNKVIRAVLSHLSTKNNIIMEGNNSNNNNIINPAQNIKGGNSPSFGEGSSETSFLSEVGYPTMWNNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="107884" PGL_stop="112697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107884" e_stop="108227"/>
            <exon e_start="108329" e_stop="108420"/>
            <exon e_start="108616" e_stop="108691"/>
            <exon e_start="109037" e_stop="109099"/>
            <exon e_start="109413" e_stop="109542"/>
            <exon e_start="109669" e_stop="109754"/>
            <exon e_start="109845" e_stop="109970"/>
            <exon e_start="110289" e_stop="110393"/>
            <exon e_start="110483" e_stop="110539"/>
            <exon e_start="110960" e_stop="111022"/>
            <exon e_start="111096" e_stop="111172"/>
            <exon e_start="111649" e_stop="111721"/>
            <exon e_start="112151" e_stop="112697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.985"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="107884" e_stop="108227" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="108228" i_stop="108328" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108329" e_stop="108420" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="108421" i_stop="108615" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108616" e_stop="108691" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108692" i_stop="109036" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109037" e_stop="109099" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.987">
            <gDNA_intron_boundary i_start="109100" i_stop="109412" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109413" e_stop="109542" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.835">
            <gDNA_intron_boundary i_start="109543" i_stop="109668" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109669" e_stop="109754" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109755" i_stop="109844" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="109845" e_stop="109970" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.905">
            <gDNA_intron_boundary i_start="109971" i_stop="110288" i_length="318"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="110289" e_stop="110393" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110394" i_stop="110482" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="110483" e_stop="110539" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.974" acc_prob="0.968">
            <gDNA_intron_boundary i_start="110540" i_stop="110959" i_length="420"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="110960" e_stop="111022" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.928" acc_prob="0.983">
            <gDNA_intron_boundary i_start="111023" i_stop="111095" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="111096" e_stop="111172" e_length="77"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.948">
            <gDNA_intron_boundary i_start="111173" i_stop="111648" i_length="476"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="111649" e_stop="111721" e_length="73"/>
          </exon>
          <intron i_serial="12" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111722" i_stop="112150" i_length="429"/>
          </intron>
          <exon e_serial="13" e_score="0.996">
            <gDNA_exon_boundary e_start="112151" e_stop="112697" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107884" stop="108227"/>
              <exon start="108329" stop="108420"/>
              <exon start="108616" stop="108691"/>
              <exon start="109037" stop="109099"/>
              <exon start="109413" stop="109542"/>
              <exon start="109669" stop="109754"/>
              <exon start="109845" stop="109970"/>
              <exon start="110289" stop="110393"/>
              <exon start="110483" stop="110539"/>
              <exon start="110960" stop="111022"/>
              <exon start="111096" stop="111172"/>
              <exon start="111649" stop="111721"/>
              <exon start="112151" stop="112697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGCGCCATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG : CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT : TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG : ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG : AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA : TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG : GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG : ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT : GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG : GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG : GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG : GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG : ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAATATTTGTCT</gDNA_template>
            <first_frame> M  A  P  W  N  S  G  D  S  I  A  *  A  P  S  S  A  R  R  T  E  L  K  Y  S  N  I  F  Q  S  A  *  T  L  *  S  K  R  T  E  L  L  S  *  K  L  *  W  S  *  L  S  Q  *  K  L  S  Y  L  A  P  K  L  V  T  N  L  *  A  T  Q  L  Q  *  N  S  T  R  K  Y  L  V  L  N  F  Q  H  V  E  S  G  F  V  R  N  L  T  I  K  S  M  A  L  S  L  L  I  L  T  L  G  F  S  T  G :   K  K  H  W  M  L  Q  *  T  I  *  T  A  R  L  A  K  E  A  L  L  D  W  V  V  L  A  E  L  W   : L  K  L  F  R  V  A  A  *  R  *  T  L  L  *  V  V  A  F  P  K  A  E  L  L  R :   Y  M  G  P  K  V  V  E  R  L  P  *  L  S  M  L  L  Q  K  Y  R :   S  *  E  A  M  Q  C  L  L  M  L  S  M  L  L  I  L  H  T  P  K  H  L  E  *  M  *  R  I  *  S  S  A  S  L  I  M  E  R  W  L  *  K  :  S  Q  T  G  C  V  D  Q  V  P  *  I  S  F  A  L  I  Q  S  Q  P  L  L  H  V  L  K  L  R :   E  K  S  G  C  S  K  W  V  Y  K  H  A  *  *  V  K  L  Y  V  K  C  Q  A  M  P  P  K  L  D  V  L  L  Y  S  S  I  R  *  D  T  R :   L  V  F  I  T  E  I  L  R  S  Q  V  E  G  L  P  *  S  F  S  P  P  F  D  L  K  S  V  P  Q  G  R  *  N  L :   Q  K  E  T  R  K  W  V  L  R  S  E  *  E  F  K  R  V  R :   F  L  D  H  T  S  K  Q  N  L  K  L  C  L  E  K  E  *  A  S  W :   V  V  Y  *  I  V  R  N  *  L  R  W  W  L  R  K  V  H  G  I  T  T  E  S  I   : G  W  D  R  E  E  R  K  H  C  N  I  *  E  K  I  L  F  S  L  K  K  *  K  R :   W  F  G  H  R  C  *  R  Q  T  G  F  *  A  L  L  H  *  N  I  H  C  R  S  F  *  R  K  M  H  F  K  R  C  N  N  A  D  Q  S  S  A  S  I  D  Y  D  N  R  A  F  F  S  Q  H  *  H  P  Y  V  I  L  H  *  K  *  A  K  L  G  T  L  P  D  L  L  C  M  R  P  F  L  C  T  R  D  S  *  R  K  V  Y  I  L  V  S  *  W  I  F  A  R  R  G  R  H  I  H  P  E  L  T  K  L  K  N  *  S  *  G  G  E  K  E  C  *  L  F  A  A  Y  F  V  F  V  L  V  V  L  V  A  K  I  L  K  I  *  R  F  L  L  V  T  F  A  L  E  V  P  L  *  C  C  V  G  I  I  I  P  L  A  L  C  I  K  K  S  S  K  Y  L  S </first_frame>
            <second_frame>  W  R  H  G  T  P  A  T  A  *  P  K  L  L  L  Q  Q  G  E  L  S  L  S  I  V  I  S  F  N  P  L  E  L  C  S  P  R  E  R  S  F  *  A  R  N  F  N  G  V  N  F  P  S  E  S  S  V  I  W  L  Q  N  W  S  Q  I  S  K  L  L  N  F  S  K  I  L  P  E  S  I  S  S  S  I  F  S  M  W  N  Q  G  S  F  G  I  *  P  *  N  Q  W  R  F  L  S  *  F  *  R  S  D  S  R  P   : A  K  S  I  G  C  C  N  E  R  Y  K  Q  L  V  W  Q  R  K  R  Y  *  I  G  *  C  W  R  S  S  G  :  *  N  F  S  E  W  L  L  D  A  R  L  C  F  R  W  W  H  S  Q  R  Q  N  C  *   : D  I  W  A  R  K  *  W  K  D  Y  L  S  S  P  C  Y  C  R  S  T   : E  A  R  R  Q  C  N  A  C  *  C  *  A  C  F  *  S  C  I  L  Q  S  T  W  S  R  C  R  E  F  D  R  L  P  A  *  *  W  R  D  G  S  R  N :   R  R  P  D  V  *  I  R  C  R  R  S  H  L  H  *  F  S  L  S  P  Y  S  T  C  *  N  *   : G  R  N  R  D  A  A  N  G  F  T  S  T  P  D  E  S  S  F  T  *  N  V  R  Q  C  L  Q  S  W  M  Y  S  Y  I  P  Q  S  D  K  I  Q   : D  W  C  L  L  R  K  S  *  G  H  K  W  R  D  C  L  K  V  F  R  L  R  S  T  *  N  P  F  H  R  E  D  K  I   : C  K  R  R  R  G  S  G  Y  *  G  P  S  E  S  S  K  E  *   : G  F  *  T  I  Q  A  S  R  I  *  N  Y  V  W  R  R  S  E  Q  A   : G  L  C  I  R  L  C  G  T  D  *  G  G  G  *  E  R  F  M  V  *  L  R  R  A  *  :  A  G  T  G  K  R  E  S  I  A  I  F  E  R  K  S  S  S  L  *  R  N  R  K   : D  G  S  V  I  G  A  R  D  K  R  V  F  R  L  F  F  I  E  T  S  T  A  A  A  S  R  G  R  C  T  S  R  D  A  I  T  R  I  R  V  L  L  Q  L  I  M  I  T  E  H  F  S  A  N  I  D  I  H  M  *  F  Y  I  R  N  E  Q  S  W  G  H  C  Q  I  C  F  V  *  D  H  F  C  A  L  E  I  L  E  E  R  C  I  F  L  *  A  N  G  S  L  H  E  E  E  D  T  Y  I  L  N  *  P  N  *  R  I  R  V  K  V  V  K  R  S  V  S  S  L  L  H  I  L  S  L  F  W  L  Y  W  *  P  K  F  *  K  S  E  D  F  C  L  *  H  L  H  W  K  Y  H  S  S  V  A  L  V  L  L  S  H  *  L  Y  A  L  R  N  L  V  N  I  C   </second_frame>
            <third_frame>   G  A  M  E  L  R  R  Q  H  S  L  S  S  F  F  S  K  E  N  *  A  *  V  *  *  Y  L  S  I  R  L  N  F  V  V  Q  E  N  G  A  F  K  L  E  T  L  M  E  L  T  F  P  V  K  A  Q  L  F  G  S  K  I  G  H  K  S  L  S  Y  S  T  S  V  K  F  Y  Q  K  V  S  R  P  Q  F  S  A  C  G  I  R  V  R  S  E  F  D  H  K  I  N  G  A  F  S  P  D  S  D  A  R  I  L  D  R  :  Q  K  A  L  D  A  A  M  N  D  I  N  S  S  F  G  K  G  S  V  T  R  L  G  S  A  G  G  A  L  V :   E  T  F  P  S  G  C  L  T  L  D  F  A  L  G  G  G  I  P  K  G  R  I  V  E  :  I  Y  G  P  E  S  S  G  K  T  T  L  A  L  H  A  I  A  E  V  Q  :  K  L  G  G  N  A  M  L  V  D  A  E  H  A  F  D  P  A  Y  S  K  A  L  G  V  D  V  E  N  L  I  V  C  Q  P  D  N  G  E  M  A  L  E   : I  A  D  R  M  C  R  S  G  A  V  D  L  I  C  I  D  S  V  S  A  L  T  P  R  A  E  I  E  :  G  E  I  G  M  Q  Q  M  G  L  Q  A  R  L  M  S  Q  A  L  R  K  M  S  G  N  A  S  K  A  G  C  T  L  I  F  L  N  Q  I  R  Y  K  :  I  G  V  Y  Y  G  N  P  E  V  T  S  G  G  I  A  L  K  F  F  A  S  V  R  L  E  I  R  S  T  G  K  I  K  S  :  A  K  G  D  E  E  V  G  I  K  V  R  V  R  V  Q  K  S  K  :  V  S  R  P  Y  K  Q  A  E  F  E  I  M  F  G  E  G  V  S  K  L  :  G  C  V  L  D  C  A  E  L  I  E  V  V  A  K  K  G  S  W  Y  N  Y  G  E  H  R :   L  G  Q  G  R  E  K  A  L  Q  Y  L  R  E  N  P  L  L  S  E  E  I  E  K  :  M  V  R  S  S  V  L  E  T  N  G  F  L  G  S  S  S  L  K  H  P  L  P  Q  L  L  E  E  D  A  L  Q  E  M  Q  *  R  G  S  E  F  C  F  N  *  L  *  *  Q  S  I  F  Q  P  T  L  T  S  I  C  D  S  T  L  E  M  S  K  V  G  D  T  A  R  F  A  L  Y  E  T  I  S  V  H  *  R  F  L  K  K  G  V  Y  S  C  K  L  M  D  L  C  T  K  R  K  T  H  T  S  *  I  N  Q  T  E  E  L  E  L  R  W  *  K  G  V  L  A  L  C  C  I  F  C  L  C  F  G  C  T  G  S  Q  N  F  E  N  L  K  I  F  A  C  N  I  C  I  G  S  T  T  L  V  L  R  W  Y  Y  Y  P  I  S  S  M  H  *  E  I  *  *  I  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107961" stop="108227"/>
                    <exon start="108329" stop="108420"/>
                    <exon start="108616" stop="108691"/>
                    <exon start="109037" stop="109099"/>
                    <exon start="109413" stop="109542"/>
                    <exon start="109669" stop="109754"/>
                    <exon start="109845" stop="109970"/>
                    <exon start="110289" stop="110393"/>
                    <exon start="110483" stop="110539"/>
                    <exon start="110960" stop="111022"/>
                    <exon start="111096" stop="111172"/>
                    <exon start="111649" stop="111721"/>
                    <exon start="112151" stop="112258"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLSIRLNFVVQENGAFKLETLMELTFPVKAQLFGSKIGHKSLSYSTSVKFYQKVSRPQFSACGIRVRSEFDHKINGAFSPDSDARILDRQKALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGIPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSAKGDEEVGIKVRVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAELIEVVAKKGSWYNYGEHRLGQGREKALQYLRENPLLSEEIEKMVRSSVLETNGFLGSSSLKHPLPQLLEEDALQEMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="114328" PGL_stop="112024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114328" e_stop="114177"/>
            <exon e_start="113564" e_stop="113506"/>
            <exon e_start="113349" e_stop="113294"/>
            <exon e_start="113217" e_stop="113165"/>
            <exon e_start="113053" e_stop="112821"/>
            <exon e_start="112553" e_stop="112531"/>
            <exon e_start="112087" e_stop="112024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="0.469"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114328" e_stop="114177" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114176" i_stop="113565" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113564" e_stop="113506" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="113505" i_stop="113350" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113349" e_stop="113294" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113293" i_stop="113218" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113217" e_stop="113165" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113164" i_stop="113054" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="113053" e_stop="112821" e_length="233"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112820" i_stop="112554" i_length="267"/>
          </intron>
          <exon e_serial="6" e_score="0.652">
            <gDNA_exon_boundary e_start="112553" e_stop="112531" e_length="23"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112530" i_stop="112088" i_length="443"/>
          </intron>
          <exon e_serial="7" e_score="0.469">
            <gDNA_exon_boundary e_start="112087" e_stop="112024" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114328" stop="114177"/>
              <exon start="113564" stop="113506"/>
              <exon start="113349" stop="113294"/>
              <exon start="113217" stop="113165"/>
              <exon start="113053" stop="112821"/>
              <exon start="112553" stop="112531"/>
              <exon start="112087" stop="112024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113194" stop="113165"/>
              <exon start="113053" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338947" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG : AAAGACAAAATATGCAGCAAAGA : AAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</gDNA_template>
            <first_frame> G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L   : E  R  Q  N  M  Q  Q  R  :  K  S  L  N  M  L  I  *  *  L  R  Y  K  R  I  L  S  S  C  I  G  </first_frame>
            <second_frame>  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  :  K  D  K  I  C  S  K  E :   N  L  S  I  C  *  S  N  N  Y  D  I  K  E  Y  Y  L  R  V  *  V </second_frame>
            <third_frame>   Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R :   K  T  K  Y  A  A  K   : K  I  S  Q  Y  V  N  L  I  T  T  I  *  K  N  I  I  F  V  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114327" stop="114177"/>
                    <exon start="113564" stop="113506"/>
                    <exon start="113349" stop="113294"/>
                    <exon start="113217" stop="113165"/>
                    <exon start="113053" stop="112959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="117885" PGL_stop="116348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117885" e_stop="117189"/>
            <exon e_start="117092" e_stop="116908"/>
            <exon e_start="116704" e_stop="116348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.527" acc_prob="0.985" e_score="0.931"/>
          <exon-intron don_prob="0.985" acc_prob="0.896" e_score="1.000"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="117885" e_stop="117189" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.527" acc_prob="0.985">
            <gDNA_intron_boundary i_start="117188" i_stop="117093" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117092" e_stop="116908" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.896">
            <gDNA_intron_boundary i_start="116907" i_stop="116705" i_length="203"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="116704" e_stop="116348" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117885" stop="117189"/>
              <exon start="117092" stop="117064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117329" stop="117189"/>
              <exon start="117092" stop="116908"/>
              <exon start="116704" stop="116348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344998" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG : GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG : GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATTTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTGAGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</gDNA_template>
            <first_frame> L  V  A  S  V  S  S  F  F  S  L  V  K  I  F  I  K  N  G  I  K  M  A  Q  K  R  L  H  D  L  N  Y  T  T  R  S  K  H  T  T  Y  F  P  L  I  S  L  K  N  P  L  P  S  P  P  T  E  R  G  I  L  S  I  K  E  N  Q  K  S  S  K  C  L  V  N  G  A  K  K  E  H  P  H  N  L  T  I  L  S  R  V  Q  L  L  V  Q  T  Y  K  F  L  M  H  L  F  L  T  L  G  I  C  S  L  R  I  S  F  *  T  H  F  I  P  S  *  R  D  V  *  W  K  F  P  N  R  F  N  L  L  G  D  S  S  *  L  D  G  F  H  D  A  A  L  P  T  C  T  F  P  L  M  H  A  F  N  D  V  K  T  T  A  I  A  P  S  *  V  G  G  G  G  G  G  S  S  K  M  V  S  F  L  L  L  P  I  L  S  S  L  C  W  W  V  V  *  E  V  K  G  S  S  V  V  E  T  E  T  I  R  W  L  S  F  L  V  V  V  L  I  L  H  Q   : G  G  K  D  S  L  A  L  K  I  D  T  V  L  A  F  C  D  E  M  C  L  K  D  R  A  S  I  Q  E  D  G  N  P  H  H  K  E  F  G  L  I  Q  P  M  S  G  R  R  L  S  K  A  V  H  T  P  *  C  A  C  Q  :  V  D  F  M  L  E  L  L  *  I  G  L  D  L  Y  I  F  A  R  V  I  C  I  P  A  P  S  E  A  Q  E  S  A  A  F  Q  M  I  T  Q  L  Q  T  M  A  D  H  T  H  Y  I  *  *  W  Q  R  N  S  N  T  N  I  F  E  S  Y  *  W  L  P  Y  H  S  T  V  L  V  S  L  L  S  R  S  N  C  Y  V  C  L  *  A  E  F  V  V  L  E  Y  *  L  V  A  T  R  I  S  A  L  N  I  Y  Q  G  Q  I  H  T  V  P </first_frame>
            <second_frame>  *  L  P  L  Y  L  L  F  F  P  W  *  R  Y  L  L  K  M  V  S  R  W  H  R  K  D  Y  M  T  *  T  T  P  L  A  P  N  I  L  H  I  F  P  *  *  V  *  K  T  H  F  H  H  L  Q  R  K  E  E  F  Y  P  S  K  K  T  K  N  P  A  S  V  *  *  M  E  Q  R  K  S  I  P  I  T  *  P  S  Y  Q  E  Y  N  Y  *  Y  K  H  T  N  S  *  C  I  C  F  *  L  W  V  S  A  A  S  V  S  P  F  R  P  I  L  F  Q  A  D  V  M  C  S  G  S  F  L  T  D  S  T  F  *  E  I  H  H  S  *  M  V  F  M  M  L  L  Y  L  P  V  H  F  L  *  C  M  L  S  M  M  S  K  L  Q  Q  L  L  H  P  R  W  G  G  G  G  G  G  A  L  K  W  F  P  F  S  C  F  L  F  F  L  L  C  V  G  G  W  F  R  R  *  R  G  A  A  W  L  R  P  R  L  S  G  G  *  V  S  L  W  W  S  *  F  F  I  K  :  V  A  K  I  V  W  L  *  K  *  I  R  Y  W  P  S  V  M  K  C  A  *  R  T  E  L  L  S  K  K  T  A  I  H  I  T  K  S  L  A  *  F  N  Q  *  A  E  G  D  C  P  K  L  Y  T  L  H  D  V  R  A  R :   W  I  S  C  W  S  Y  C  K  *  G  W  I  C  T  F  L  R  E  *  S  A  F  Q  P  P  L  K  H  R  S  Q  L  H  F  K  *  L  P  N  Y  R  L  W  Q  T  T  P  I  T  F  N  D  G  K  E  T  A  T  P  I  F  L  N  P  I  N  G  Y  H  T  I  V  L  Y  *  F  H  Y  F  P  E  A  T  V  M  C  V  F  E  L  N  L  L  S  *  N  I  S  W  L  Q  P  V  S  V  L  *  T  F  I  K  A  K  Y  I  R  C   </second_frame>
            <third_frame>   S  C  L  C  I  F  F  F  F  L  G  K  D  I  Y  *  K  W  Y  Q  D  G  T  E  K  T  T  *  P  K  L  H  H  S  L  Q  T  Y  Y  I  F  S  P  N  K  F  K  K  P  T  S  I  T  S  N  G  K  R  N  F  I  H  Q  R  K  P  K  I  Q  Q  V  S  S  K  W  S  K  E  R  A  S  P  *  L  N  H  P  I  K  S  T  T  I  S  T  N  I  Q  I  L  D  A  F  V  S  D  S  G  Y  L  Q  P  P  Y  L  L  L  D  P  F  Y  S  K  L  T  *  C  V  V  E  V  S  *  Q  I  Q  P  F  R  R  F  I  I  A  R  W  F  S  *  C  C  S  T  Y  L  Y  I  S  F  N  A  C  F  Q  *  C  Q  N  Y  S  N  C  S  I  L  G  G  G  G  G  G  G  E  L  *  N  G  F  L  S  L  A  S  Y  S  F  F  F  V  L  V  G  G  L  G  G  E  G  E  Q  R  G  *  D  R  D  Y  Q  V  A  K  F  P  C  G  G  L  D  S  S  S  R :   W  Q  R  *  F  G  S  K  N  R  Y  G  T  G  L  L  *  *  N  V  L  E  G  Q  S  F  Y  P  R  R  R  Q  S  T  S  Q  R  V  W  L  D  S  T  N  E  R  K  E  I  V  Q  S  C  T  H  S  M  M  C  V  P   : G  G  F  H  A  G  V  T  V  N  R  V  G  F  V  H  F  C  E  S  D  L  H  S  S  P  L  *  S  T  G  V  S  C  I  S  N  D  Y  P  I  T  D  Y  G  R  P  H  P  L  H  L  M  M  A  K  K  Q  Q  H  Q  Y  F  *  I  L  L  M  A  T  I  P  *  Y  C  I  S  F  I  T  F  Q  K  Q  L  L  C  V  S  L  S  *  I  C  C  L  R  I  L  V  G  C  N  P  Y  Q  C  F  E  H  L  S  R  P  N  T  Y  G  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117885" stop="117532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVASVSSFFSLVKIFIKNGIKMAQKRLHDLNYTTRSKHTTYFPLISLKNPLPSPPTERGILSIKENQKSSKCLVNGAKKEHPHNLTILSRVQLLVQTYKFLMHLFLTLGICSLRISF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0215P04.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117270" stop="117189"/>
                    <exon start="117092" stop="116920"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKGSSVVETETIRWLSFLVVVLILHQGGKDSLALKIDTVLAFCDEMCLKDRASIQEDGNPHHKEFGLIQPMSGRRLSKAVHTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 176152 bytes spliced alignments in total
$ 27 spliced alignments have been stored
$ 6524 bytes was the average size of a spliced alignment
$ 30648 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1532 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 51 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:29:12
-->
