<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 09:37:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343371" ref_strand="+" ref_description="SGN-U343371        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aatttttgtttttgtctctctcttcggaaaaaccctagttccctacttgttccattttccctgaaaatatcgatttcgatccagctaaagttttccagtttttcctttcaaattcatggggttttaggaggaaagtttcgattttttctgtttttttacaatcccagttgttgtgttttgtgcttcgtgtttcgtttgttttaaggttagggtttagttttttcatcccttttggtggttgttgggttgtgattacatgtatggattcagatgcaaacgatttgaattcaagaaataggttgcgttggggcgataatcacaaagtttatacccggaagcgccgtagaaccctagagaatactagtactgacgttgctccggccgccacagccgctgttagctcagccgcagctgcaccggaggttatttcgaatagcgggagggatacgaacgagaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="+" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="11369" stop="12430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11669" g_stop="12130" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="+" ref_id="SGN-U343371" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11669" e_stop="12130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGTTTTTGTCTCTCTCTTCGGAAAAACCCTAGTTCCCTACTTCTTCCATTTTCCCTGAAAATATCGATTTCGATCCAGCTAAGGTTTTCCAGTTTTTCCTTTCAAATTCATGGGGTTTTAGGAGGAAAGTTTCGATTTTTTCTGTTTTTTTACAATCCCAGTTGTTGTGTTTTGTGCTTCGTGTTTCGTTTGTTTTAGGGTTAGGGTTTAGTTTTTTCATCCCTTTTGGTGGTTGTTGGGTTGTGATTACATGTATGGATTCAGATGCAAACGATTTGAATTCAAGAAATAGGTTGCGTTGGGGCGATAATCACAAAGTTTATACCCGGAAGCGCCGTAGAACCCTAGAGAATACTAGTACTGACGTTGCTCCGGCCGCCACAGCCGCTGTTAGCTCAGCCGCAGCTGCACCGGAGGTTATTTCGAATAGCGGGAGGGATACGAACGAGAATGATG</genome_strand>
        <mrna_strand>AATTTTTGTTTTTGTCTCTCTCTTCGGAAAAACCCTAGTTCCCTACTTGTTCCATTTTCCCTGAAAATATCGATTTCGATCCAGCTAAAGTTTTCCAGTTTTTCCTTTCAAATTCATGGGGTTTTAGGAGGAAAGTTTCGATTTTTTCTGTTTTTTTACAATCCCAGTTGTTGTGTTTTGTGCTTCGTGTTTCGTTTGTTTTAAGGTTAGGGTTTAGTTTTTTCATCCCTTTTGGTGGTTGTTGGGTTGTGATTACATGTATGGATTCAGATGCAAACGATTTGAATTCAAGAAATAGGTTGCGTTGGGGCGATAATCACAAAGTTTATACCCGGAAGCGCCGTAGAACCCTAGAGAATACTAGTACTGACGTTGCTCCGGCCGCCACAGCCGCTGTTAGCTCAGCCGCAGCTGCACCGGAGGTTATTTCGAATAGCGGGAGGGATACGAACGAGAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319821" ref_strand="+" ref_description="SGN-U319821        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA-binding bromodomain-containing protein, contains bromodomain, INTERPRO:IPR001487 | chr1:1907088-1910847 FORWARD | Aliases: F9P14.9, F9P14_9(evalue: 1e-89, score=327) genbank/nr: Bromodomain(evalue: 2e-90, score=336)">
      <seq>ttgataagcacagacttcaggtttttaggaattgtagcagcttgcttcagaggttaatgaaacacaagcatggttgggtgtttaatgagccagtgaacgtgaaatctcttgggctacatgattatcatgacatcattaagcatcctatggatttgggcaccattaagactaggttatctgatgattggtacaagtctccaatggaatttgcggaggatgtacgactcgtctttcgtaatgccatgacttataatcctagagggcaagatgtacatgttatggctgaacagttatcagagatcttcgaagagagatgggcagttatagaggctgagtaccattcagattggaggtaccaaatgtatcatgatgttggtgctcccactcccacctcaagaatgacctcttatcctcctccttttctccacaccccagtgtcttctcgttctcttgctccacatgcccgtcaactgcatccgttggatagatctgagtcaatgactaggccggttaatcccaagatgaagacttcaaatatagctcatgttactaggacaccagttcctaagaaaccgaaggcaaaagatctcaataagagagacatgacgtatgaggaaaagcagaagcttagcactaatcttcagaatttaccttcagaaaagcttgatgcaattgttcagataattaagaagaggaacaccgcacttagtcaagacaacgatgagattgaagtagatatagatagtgttgatgcagaaacactctgggagcttgatagatttgtaacaaatttcaaaaagagttttagcaagtataagagaaaagctgaacttcttcgagccagggaaggagctgctcaggctgctcgaaatgtgaaccctacatcaatggttgctgatgcactgaaagaaaatggaactggtgaaaaagatacagctcctgctacccttgaaggtggaagaccggcggatagtgcaagtagcagctcaagtagttccagcagtgattcaggctcatcctctagtgattctgatagtgatagttcttcagcatctggatcagaggcggcgcaatcacccaggacatgacaagctcttgatgaaatttggattatgaatgcatcagagcagacggctgttcaaacactcatctgaaagacgtcgtgtggctcttgcatgataagtttctttcaagaacttcaagtatgggaggaagtgaagtcctagtgaatttgggagcatgttagctgttggcgctcacattcttctctgtcatatagcttgtcatcgacaagctatatacagagggaggtggttatggtggtagtactgtgagggtatttaacacctgtttgttgaattaaaatattgtgtgctgaaaaaatctatgttttcagtgtcattgtcaacaatttggcaggatcatgattcatgcaaggtcctgcagctgtaacctggatgtacaaagagcataataggctgatgatgtgtattgtttgtttgctttgggagtatttattgcattgtaatatcaccatcagggatttatatggaaataacagtaggagggtgtacatactttctcaatttcttgtctggcatcataatatgcggcaagttataactgacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="+" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="12782" stop="18016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13082" g_stop="13956" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13957" i_stop="14062" i_length="106">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14063" g_stop="14108" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="921" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14109" i_stop="14203" i_length="95">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14204" g_stop="14308" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="1026" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14309" i_stop="14428" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14429" g_stop="14502" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1027" r_stop="1100" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14503" i_stop="17184" i_length="2682">
            <donor d_prob="0.662" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17185" g_stop="17716" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="1631" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="+" ref_id="SGN-U319821" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1632</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13082" e_stop="13956"/>
          <exon e_start="14063" e_stop="14108"/>
          <exon e_start="14204" e_stop="14308"/>
          <exon e_start="14429" e_stop="14502"/>
          <exon e_start="17185" e_stop="17716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAAGCACAGACTTCAGGTTTTTAGGAATTGTAGCAGCTTGCTTCAGAGGTTAATGAAACACAAGCATGGTTGGGTGTTTAATGAGCCAGTGAACGTGAAATCTCTTGGGCTACATGATTATCATGACATCATTAAGCATCCTATGGATTTGGGCACCATTAAGACTAGGTTATCTGATGATTGGTACAAGTCTCCAATGGAATTTGCGGAGGATGTACGACTCGTCTTTCGTAATGCCATGACTTATAATCCTAGAGGGCAAGATGTACATGTTATGGCTGAACAGTTATCAGAGATCTTCGAAGAGAGATGGGCAGTTATAGAGGCTGAGTACCATTCAGATTGGAGGTACCAAATGTATCATGATGTTGGTGCTCCCACTCCCACCTCAAGAATGACCTCTTATCCTCCTCCTTTTCTCCACACCCCAGTGTCTTCTCGTTCTCTTGCTCCACATGCCCGTCAACTGCATCCGTTGGATAGATCTGAGTCAATGACTAGGCCGGTTAATCCCAAGATGAAGACTTCAAATATAGCTCATGTTACTAGGACACCAGTTCCTAAGAAACCGAAGGCAAAAGATCTCAATAAGAGAGACATGACGTATGAGGAAAAGCAGAAGCTTAGCACTAATCTTCAGAATTTACCTTCAGAAAAGCTTGATGCAATTGTTCAGATAATTAAGAAGAGGAACACCGCACTTAGTCAAGACAACGATGAGATTGAAGTAGATATAGATAGTGTTGATGCAGAAACACTCTGGGAGCTTGATAGATTTGTAACAAATTTCAAAAAGAGTTTTAGCAAGTATAAGAGAAAAGCTGAACTTCTTCGAGCCAGGGAAGGAGCTGCTCAGGCTGCTCGAAATGTGGTGAGCTTTGTTCCTTCATGCATCCTTCTCTTATTCCCCACCCACCCCCAGTAGTCATTGTGTGTTGTCTGGTTGAGATTCTTAATGTGTGAAAATTACATTGCAGAACCCTACATCAATGGTTGCTGATGCACTGAAAGAAAATGGAACTGGTAAGTGTCTCATAGGAGGAATTGTTGCCTCGGATAGGTTTCAAAGATGCATTGGGTGAAAAATACTTATTGTTCTTGCTGTCATGTATGAGTAGGTGAAAAAGATACAGCTCCTGCTACCCTTGAAGGTGGAAGACCGGCGGATAGTGCAAGTAGCAGCTCAAGTAGTTCCAGCAGTGATTCAGGCTCATCCTCTAGTGGTAATTATGATACACTCCTTCAAGTCTCAATGCTGCACACATAATGATTGTTCATTGTTTGACTAATTTTCAGCAAGTTCTTCTCAGTATCTCTAATTTAATTTGCTACACTATGTGCAGATTCTGATAGTGATAGTTCTTCAGCATCTGGATCAGAGGCGGCGCAATCACCCAGGACATGACAAGCTCTTGATGTGAGTAAGACTGATTTAGCTAGTGTGCTGATGTTTCTATTGTTGTGCCCCCCCCCCCCCCCCCTTTTTTTGATGAATGTGTACTTATTTTTTCCCCTAGAAGCATCTTTCCTTGTTTTTATTCTCATATATATTTGAAATGTGAAGTTTGGATTCTGTGCCATGTGCTTTTTTGAGTATGCTGTTTGTGTTAAGTTCTCTTGATTGCTGCAGTTGTTAGGTTGATGTTTGATGAAATGGTATGGTTGGGAGAATACTCTTTGGCATTGGTTTGATGGTGTCTGTGATTCCTGTTGTAACTATTTTTGGAAATATGGTTGAGGACTATTACTATGTCTTATATGGTGTTTTGCAAAATTACATATGAGATGAATGGAACAAATAACCACTTGTGTTGATGGAATGTTTTGTTGGACTGGGAGCATGAGATTCATTTTGGTGTAGGAAGTGGAAGTCTTAGAAACTCTTCATTGTGAGGAGGGGCCATTTAAGTCACCGTAGATTAGTTTTAATAGAGTAGCTTGACAATGAATGTTACGACTGCATGAGAACCGTGAAATAGTTTGGGTAGGACAGCTTCTGTGCCTGATAGATGTGGGAGTTGATGTTTTATCCAGTGGTGTAATGAGACAACTTTTCATGACAAGTGGAGAGGGTCTTTTTAGAGTTGCACATTTTCTTTTCTGGTTTCCGACAGCTCTTTAGTGAATGAAGCTGACAGTTTGAAATTTCACTACTTATGGGCTCATATAGCTGATGATTAACACACTTAGTATTAGGCGTCTCAACTTGGGCTCCATTTTCGTGGTTACACAAGTTGTATCAAACTCTGTGAAAAATACCAGCCTAGTTTGAACAAGTTGAGCAACACTTCTTCTCCTTGCATATCTAATATGGTCAACTGCAACCATTGATTTCAAAACTTGACAGTATCTGATATTGGATTTGTTCAATAAGTTTGATCATTGCATTTAATTCAAACAGATTGGTGATATATGTAAAGAGCCAATGCTCATCTACTTTCTTATTAACAAATTAATAAATCGAATTACCAACCGTACAATTTTATTTAGCAATATGATTATTTTACCAGATGAAAACACGTGTCACTTGAAAACCACTCTAACTTTGTGTCTTCTGATCAAGAAAAAAAAAGAGAAATTTGAGAAAGCAGAACAGGAAAATTACAAAGATATTTCTAACTTATTTTGGTTACTTCTGTTCCATTTTTTAGCTACTGTTTCCAGTTTTGTTATGTTAAAAGATGAGTTGTTGTCCTAATATCCTTTAAACCATCAGCAAATCTTGCTTTTTATCACATGAAAACTCTTGGTTCTAAGTTTCTGTTTTATTCCGTTGAGGTGCATTCACTTTTTGGGCCTTCTCTTTACCGAACCACCATGCAGATTAGCCATTTAAGGAGGGCATTTCCATAATCATGGTTATCCGATGCTTCAGTGACTTAGTGAATGTACTTTAGTCTGATCAAGAAATAGATAAAGAAATGTGTTGTGCCCCCCTGTCTAAGAGTGAGGATGGATTTATGCTTTTTCTTGAAGTAACCACAGCTGAAAGGGAATTAGGGTAGAACTGCAGGATTATATTTGGTAGTCTCATTGTACTTTGCCAGAAAATGATAGTATGTGAATAAACTTCCCTTGTTTTGTTGAAAATCTTGTTTTGTATTACACCCAAGGGCATAGCCTAGATGGATAAAGTCATGGGAGACTATGCTTCAAATCACATTAGATGCAAAAGTGCTAAGTGATTTTTTGCCATGTGCTTAAGCCTTATTCAGCAGGAACTACTCGGTCATGAGCAGGTGGTAGGTACCCAGGGGAATAGTCAAGTTGCACACAGATTGGCCAGTCATTAATAGAATTGATCTTGCTTTGTGTTTCTCTTTTACAACCTAGATGTTTGGTTTTGGAACTGTAGTATGTTAAGCTTAATCTACAAGGAAAGTCGATGGATTTCAATTTTCTGTAGAAACCTGCGATGATCTCTTTCCGTCCTTCCGCAAAAAAGAAGGAAGAACAGGGGAAAAATCACTGTATCTACACAATTCTCATTTGTTGTCCATGAGTTGTGTATAATTAGAACAGTGCTTTTTGAAATTTAAAAGGAAGAATATGTCTAATTTACTAGTGTTTCTGCCAGATCCTTCCCAAGGAGAAAAAAAACACTTTTTAGTAGTTTCGGAGAAAGTTCAATATCACTTGATCCGAAAAAAGAAAAGGTTGTATAAGCAGCAGCAGATGCACCCATTTTCTAGCTCTGTTTCCTTAGGTACCGTACGATACTTAGCAGGGCAGAATTGCAGCAAGTTTCCCCTCCCTAGAACTAGGAACTACTGTTGTTTTCCTTTATATCCTCTATCCACTCTGTTATTGTGGCTCCCCGGTTTTTTCATGCACCTAGGGACACCATGTTATAGTGGAAAGAAGGAGAAGATAAGTTGTGTTACCCTTTTTTTTTGCTTGTAATGCTTTTTTCCCCTTTGAATTTGTCTCTGAAACTGTGGCGGAGTAATTATGTGAAACGAAGAACTTGGTTGAGGAACTTTCATTGACTACTACTTGATGCTCTGTATATTCTATGTTTCTTTGCCTTATATTTTAAAATGTTTCTTGCCTATCATGAGGAAGCGTTGTGTAAATCTGTCTCTTATAATTATTGCAGGAAATTTGGATTATGAATGCATCAGAGCAGACGGCTGTTCAAACACTCATCTGAAAGACGTCGTGTGGCTCTTGCATGATAAGTTTCTTTCAAGAACTTCAAGTATGGGAGGAAGTGAAGTCCTAGTGAATTTGGGAGCATGTTAGCTGTTGGCGCTCACATTCTTCTCTGTCATATAGCTTGTCATCGACAAGCTATATACAGAGGGAGGTGGTTATGGTGGTAGTACTGTGAGGGTATTTAACACCTGTTTGTTGAATTAAAATATTGTGTGCTGAAAAAATCTATGTTTTCAGTGTCATTGTCAACAATTTGGCAGGATCATGATTCATGCAAGGTCCTGCAGCTGTAACCTGGATGTACAAAGAGCATAATAGGCTGATGATGTGTATTGTTTGTTTGCTTTGGGAGTATTTATTGCATTGTAATATCACCATCAGGGATTTATATGGAAATAACAGTAGGAGGGTGTACATACTTTCTCAATTTCTTGTCTGGCATCATAATATGCGGCAAGTTATTAACTGACGCA</genome_strand>
        <mrna_strand>TTGATAAGCACAGACTTCAGGTTTTTAGGAATTGTAGCAGCTTGCTTCAGAGGTTAATGAAACACAAGCATGGTTGGGTGTTTAATGAGCCAGTGAACGTGAAATCTCTTGGGCTACATGATTATCATGACATCATTAAGCATCCTATGGATTTGGGCACCATTAAGACTAGGTTATCTGATGATTGGTACAAGTCTCCAATGGAATTTGCGGAGGATGTACGACTCGTCTTTCGTAATGCCATGACTTATAATCCTAGAGGGCAAGATGTACATGTTATGGCTGAACAGTTATCAGAGATCTTCGAAGAGAGATGGGCAGTTATAGAGGCTGAGTACCATTCAGATTGGAGGTACCAAATGTATCATGATGTTGGTGCTCCCACTCCCACCTCAAGAATGACCTCTTATCCTCCTCCTTTTCTCCACACCCCAGTGTCTTCTCGTTCTCTTGCTCCACATGCCCGTCAACTGCATCCGTTGGATAGATCTGAGTCAATGACTAGGCCGGTTAATCCCAAGATGAAGACTTCAAATATAGCTCATGTTACTAGGACACCAGTTCCTAAGAAACCGAAGGCAAAAGATCTCAATAAGAGAGACATGACGTATGAGGAAAAGCAGAAGCTTAGCACTAATCTTCAGAATTTACCTTCAGAAAAGCTTGATGCAATTGTTCAGATAATTAAGAAGAGGAACACCGCACTTAGTCAAGACAACGATGAGATTGAAGTAGATATAGATAGTGTTGATGCAGAAACACTCTGGGAGCTTGATAGATTTGTAACAAATTTCAAAAAGAGTTTTAGCAAGTATAAGAGAAAAGCTGAACTTCTTCGAGCCAGGGAAGGAGCTGCTCAGGCTGCTCGAAATGTG..........................................................................................................AACCCTACATCAATGGTTGCTGATGCACTGAAAGAAAATGGAACTG...............................................................................................GTGAAAAAGATACAGCTCCTGCTACCCTTGAAGGTGGAAGACCGGCGGATAGTGCAAGTAGCAGCTCAAGTAGTTCCAGCAGTGATTCAGGCTCATCCTCTAGTG........................................................................................................................ATTCTGATAGTGATAGTTCTTCAGCATCTGGATCAGAGGCGGCGCAATCACCCAGGACATGACAAGCTCTTGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTGGATTATGAATGCATCAGAGCAGACGGCTGTTCAAACACTCATCTGAAAGACGTCGTGTGGCTCTTGCATGATAAGTTTCTTTCAAGAACTTCAAGTATGGGAGGAAGTGAAGTCCTAGTGAATTTGGGAGCATGTTAGCTGTTGGCGCTCACATTCTTCTCTGTCATATAGCTTGTCATCGACAAGCTATATACAGAGGGAGGTGGTTATGGTGGTAGTACTGTGAGGGTATTTAACACCTGTTTGTTGAATTAAAATATTGTGTGCTGAAAAAATCTATGTTTTCAGTGTCATTGTCAACAATTTGGCAGGATCATGATTCATGCAAGGTCCTGCAGCTGTAACCTGGATGTACAAAGAGCATAATAGGCTGATGATGTGTATTGTTTGTTTGCTTTGGGAGTATTTATTGCATTGTAATATCACCATCAGGGATTTATATGGAAATAACAGTAGGAGGGTGTACATACTTTCTCAATTTCTTGTCTGGCATCATAATATGCGGCAAGTTA-TAACTGACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313128" ref_strand="+" ref_description="SGN-U313128        Tomato 200607 #1 [107 ESTs aligned] arabidopsis/peptide: | Symbol: None | malate dehydrogenase (NAD), mitochondrial, identical to mitochondrial NAD-dependent malate dehydrogenase GI:3929649 SP:Q9ZP06 from (Arabidopsis thaliana); contains InterPro entry IPR001236: Lactate/malate dehydrogenase | chr1:19858283-19860605 REVERSE | Aliases: F12M16.14, F12M16_14(evalue: 2e-161, score=565) genbank/nr: gi|52139816|gb|AAU29198.1| mitochondrial malate dehydrogenase [Lycopersicon esculentum] (evalue: 0, score=661)">
      <seq>gcacgagcacaaatgaaagttttgacaggctttttttgttgccaataaatagtgcccacacagtaacacaccacaactcctaatttattttctccgccgtagcttttaccttttcctcatttcttttgtatattccgaaatgaggacctccatgttgaaatccatcgtccgccggagctccactgccggagcatcctatgtatctcgccgtggattcgcatcgggatccgcgccggagaggaaagttgcagttttgggggcagccggagggattggacagcctttatctcttctaatgaagcttaaccctttagtatccagcctttcactctacgatatcgccggtactcccggtgttgccgccgatgttagtcacatcaacaccagatctgaggttgccggttttgcaggagaagagcagctagggcaggcactggaaggagctgatgttgttatcattcctgctggtgtgccccgaaagcctggtatgacccgagatgatctgttcaacattaatgcgggtattgttaaatctctatgcacggccattgctaagtactgccccaatgctctggtcaatatgataagcaacccagtgaattccactgtccctattgctgctgaggtgtttaagaaagctggaacttatgatgaaaagaagctctttggagttaccatgcttgatgtggttagggccaagacattttatgctggaaaagctaaagtaaatgttgctgaggtcaatctcccagtagttggtggtcatgctggcataactatcctcccattattttctcaagccactccaaaggcaaatctatcagatgaggaaattgttgcactcacaaagcgaacccaagatggtgggacagaagttgtagaggccaaggctggaaagggttcagccaccctctcaatggcctatgctggggctatttttgccgatgcttgcttgaaggggttgaatggagttcccgatgttgttgaatgtgcttttgtgcagtccaatgtcaccgagcttcccttcttcgcatccaaggtaagacttgggaaaaatggagtggaggaagtcctagggttgggtccacttaacgactacgagaagcaaggacttgaggctcttaagccagagctgctctcctccattgaaaagggaatcaagtttgccaaagaaaactaaaaaaacaaaattatggtctagttttctatagtgacagttttggatctttttgggtcaattgtttttgtatcctttgcaagtttcttgcagccggaggcttagatttagctcttttgatattatacccaacatttctacaaaataatgtatggcaaactgggggcctatcccatttgccttagtgtggaggtgttattctcacatgaatcgttttccaattatggttagtagcagacaattgatgcaaaatgaagaaatgttcatgaccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="21274" stop="17520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20979" g_stop="20586" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20585" i_stop="20010" i_length="576">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20009" g_stop="19836" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="568" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="19727" i_length="109">
            <donor d_prob="0.718" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19726" g_stop="19558" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="737" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19557" i_stop="19441" i_length="117">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19440" g_stop="19379" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="799" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19378" i_stop="19196" i_length="183">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19195" g_stop="19074" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="921" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19073" i_stop="18830" i_length="244">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18829" g_stop="18712" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="1039" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18711" i_stop="18231" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18230" g_stop="17821" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1040" r_stop="1449" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1450" polyA_stop="1470"/>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U313128" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1449</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20979" e_stop="20586"/>
          <exon e_start="20009" e_stop="19836"/>
          <exon e_start="19726" e_stop="19558"/>
          <exon e_start="19440" e_stop="19379"/>
          <exon e_start="19195" e_stop="19074"/>
          <exon e_start="18829" e_stop="18712"/>
          <exon e_start="18230" e_stop="17821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTATCACAAATGAAAGTTTTGACAGGCTTTTTTTGTTGCCAATAAATAGTGCCCACACAGTAACACACCACAACTCCTAATTTATTTTCTCCGCCGTAGCTTTTACCTTTTCCTCATTTCTTTTGTATATTCCGAAATGAGGACCTCCATGTTGAAATCCATCGTCCGCCGGAGCTCCACTGCCGGAGCATCCTATGTATCTCGCCGTGGATTCGCATCGGGATCCGCGCCGGAGAGGAAAGTTGCAGTTTTGGGGGCAGCCGGAGGGATTGGACAGCCTTTATCTCTTCTAATGAAGCTTAACCCTTTAGTATCCAGCCTTTCACTCTACGATATCGCCGGTACTCCCGGTGTTGCCGCCGATGTTAGTCACATCAACACCAGATCTGAGGTTGTTTTCTACTCTCTCTCTCCCTTACGTTTTCTACTTGGAATTCTCTGTTTTTGTTCATTTTGTATGAGTATTGGCGAAGATTACTAATGAGGATTTGTATTAACTAAATTGGAACTAAGACGTATCTGGTAGGTTGATTGATTCTGTTAACATGCTTTTTTGATTTCCTGAATCTCGAGCTCCGATCCGATTTACGTTAGTCGATTTCACTAGTGAGTTTGAGTTTGTTGCTTGCTTCATTCCACTATTTAGTCTATTTTTCGAGTGTGTATCACATAAGTACATATAGATTCGTGAATGAGTTACTAAAGTACAAGGTTTTGTGCTGAAAACTAGGTGTTTGTCAGCAATGAAGAGTTCAACACCAGATCATTTTACTCTTTGCATCAGTTGCCTGTTTTAATTTCAAGATGATTTGATTACAATGTTGTTTTAGGCGTCCACTGTCAAGTAGTTAACGATTTGAAGCCCATCTACCTTTTGTGTCCTAAACCCCTCTAAATAGTGTTTGTGCCAGTTTATGGTTTTCTTTCCTGCAATTCTGATCTGTAAATATATTTGTGGACTTTGCAGGTTGCCGGTTTTGCAGGAGAAGAGCAGCTAGGGCAGGCACTGGAAGGAGCTGATGTTGTTATCATTCCTGCTGGTGTGCCCCGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACGGCCATTGCTAAGTACTGCCCCAATGTGAGTATGCTTGTGTAATTATCTCTGTATATGGGGGTTATATATAGGAGATTCTAGAAAAAGTTTCTGATTAATTTTCTCATTTGCTGCTTGTTCTGATAACTTAAAGGCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAGGTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGAAAAGCTAAAGTAAATGTTGCTGGTGCGCGTCTTCTTGTCTAATTCTTTATTTGAATTGATTTTGTTTCGCTTTACATGAAACTGTAAATTCATACAATACTATCTGTCTACTTTACTTACTTTTTGCTTCGTTTTTCAGAGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAAGTAATTTTTCTTTTCTTGTCCCTTGTTATAAAGCTTTTTCTTTTTTTAGTATCTATTATTATCTTCTTTATGTTGTAAGTGTTTGATTGAACATTTTTTAGTATGTATTATCTAAATTGTTATTGGTGATTTCCATATTGTGGCATATTGAGTCTTGTTTTTATCACTAAATTTTGGATACAGGCCACTCCAAAGGCAAATCTATCAGATGAGGAAATTGTTGCACTCACAAAGCGAACCCAAGATGGTGGGACAGAAGTTGTAGAGGCCAAGGCTGGAAAGGGTTCAGCCACCCTCTCAATGGCGTACGTTTCCACTTCAATGTTTTTCTTGATTTATTTTTTTTTCCTGAAGGATTTTCACTTTGATTGCAAGATTTTGTTTACGAATAAGTTATGGTGCTGCCCAATGTCACGGTCAAATATTTAGGAATGTAGAGAAACAAACAAAAAAAGAAACTTTTTTGACATATACTGCCCCAAACCACTTCATTTACTGGCCTTTCCTGTTTGCATACTCGGTTCTAAGCAGTTAGTTTTACTTGTGCAGCTATGCTGGGGCTATTTTTGCCGATGCTTGCTTGAAGGGGTTGAATGGAGTTCCCGATGTTGTTGAATGTGCTTTTGTGCAGTCCAATGTCACCGAGCTTCCCTTCTTCGCATCCAAGGTAATAAGCCTTTTCTTTTCCTACAAAGACACTGGACGTCATGTATACTTTTTTCTTTGAACTGTCTGATTCATTTGGTCATTGCCCTCTTATCATGTGGGTATGAAAAGGTCAAAACAAATTATATAGTTCAAGTTTAGGTTTGTTTAAGCATGTCTGAAGCTGTGTCTATTCTGGATGTGTTGAGGGATAGTTTTGACATCATGAGTCATCGATTGATCTTGATTAAGCATGTCTCATGTGGAATGGTTGGTAGCTTTTCAACAGTGCAAGTCGAATGTGTCAAGAACTAAGTTGACATCCTAGGTTATTATTTGTTGTTAGTCACACACGCATCTGAACGTAAATAGCTCGTTAACTTTGAATCATGGGCTAAATTTGTACTTCCTCTTATCAACTGACTTGTGGGTAATTCACTGTATAAGGTCACTATTTTCATTTTGCTTACTTATACATGTCATTCAATTTGATCGCTTTGCAGGTAAGACTTGGGAAAAATGGAGTGGAGGAAGTCCTAGGGTTGGGTCCACTTAACGACTACGAGAAGCAAGGACTTGAGGCTCTTAAGCCAGAGCTGCTCTCCTCCATTGAAAAGGGAATCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTTGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCCTATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATGAATCGTTTTCCAATTATGGTTAGTAGCAGACAATTGATGCAAAATGAAGAAATGTTCATGACCA</genome_strand>
        <mrna_strand>GCACGAGCACAAATGAAAGTTTTGACAGGCTTTTTTTGTTGCCAATAAATAGTGCCCACACAGTAACACACCACAACTCCTAATTTATTTTCTCCGCCGTAGCTTTTACCTTTTCCTCATTTCTTTTGTATATTCCGAAATGAGGACCTCCATGTTGAAATCCATCGTCCGCCGGAGCTCCACTGCCGGAGCATCCTATGTATCTCGCCGTGGATTCGCATCGGGATCCGCGCCGGAGAGGAAAGTTGCAGTTTTGGGGGCAGCCGGAGGGATTGGACAGCCTTTATCTCTTCTAATGAAGCTTAACCCTTTAGTATCCAGCCTTTCACTCTACGATATCGCCGGTACTCCCGGTGTTGCCGCCGATGTTAGTCACATCAACACCAGATCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGTTTTGCAGGAGAAGAGCAGCTAGGGCAGGCACTGGAAGGAGCTGATGTTGTTATCATTCCTGCTGGTGTGCCCCGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACGGCCATTGCTAAGTACTGCCCCAAT.............................................................................................................GCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAGGTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGAAAAGCTAAAGTAAATGTTGCTG.....................................................................................................................AGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAA.......................................................................................................................................................................................GCCACTCCAAAGGCAAATCTATCAGATGAGGAAATTGTTGCACTCACAAAGCGAACCCAAGATGGTGGGACAGAAGTTGTAGAGGCCAAGGCTGGAAAGGGTTCAGCCACCCTCTCAATGGC....................................................................................................................................................................................................................................................CTATGCTGGGGCTATTTTTGCCGATGCTTGCTTGAAGGGGTTGAATGGAGTTCCCGATGTTGTTGAATGTGCTTTTGTGCAGTCCAATGTCACCGAGCTTCCCTTCTTCGCATCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACTTGGGAAAAATGGAGTGGAGGAAGTCCTAGGGTTGGGTCCACTTAACGACTACGAGAAGCAAGGACTTGAGGCTCTTAAGCCAGAGCTGCTCTCCTCCATTGAAAAGGGAATCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTTGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCCTATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATGAATCGTTTTCCAATTATGGTTAGTAGCAGACAATTGATGCAAAATGAAGAAATGTTCATGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334183" ref_strand="-" ref_description="SGN-U334183        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | malate dehydrogenase (NAD), mitochondrial, identical to mitochondrial NAD-dependent malate dehydrogenase GI:3929649 SP:Q9ZP06 from (Arabidopsis thaliana); contains InterPro entry IPR001236: Lactate/malate dehydrogenase | chr1:19858283-19860605 REVERSE | Aliases: F12M16.14, F12M16_14(evalue: 1e-07, score=54.3) genbank/nr: gi|52139816|gb|AAU29198.1| mitochondrial malate dehydrogenase [Lycopersicon esculentum] (evalue: 1e-10, score=70.1)">
      <seq>tcaagtttgccaaagaaaactaaaaaaacaaaattatgtagcgacagttttggatctttttgggtcacctgattttgtatccttggcaagtttcttgcagccggaggcttagatttagctcttttgatattatacccaacatttttacaaaataatgtatggcaaattggggtgtatcccatttgccttagtgtggaggtgttgttctcacatgaatcgttttccaattatggttagaagcagacaattgatggaaaatgcagaaatgttcatgaccaaccccaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="18412" stop="17520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18112" g_stop="17821" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="296"/>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U334183" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334183" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18112" e_stop="17821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTTGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCCTATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATGAATCGTTTTCCAATTATGGTTAGTAGCAGACAATTGATGCAAAATGAAGAAATGTTCATGACCA</genome_strand>
        <mrna_strand>TCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTAT-G--TAG----C----G--ACAGTTTTGGATCTTTTTGGGTCACCTGATTTTGTATCCTTGGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTTTACAAAATAATGTATGGCAAA-TTGGGGTGTATCCCATTTGCCTTAGTGTGGAGGTGTTGTTCTCACATGAATCGTTTTCCAATTATGGTTAGAAGCAGACAATTGATGGAAAATGCAGAAATGTTCATGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334184" ref_strand="+" ref_description="SGN-U334184        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | malate dehydrogenase (NAD), mitochondrial, identical to mitochondrial NAD-dependent malate dehydrogenase GI:3929649 SP:Q9ZP06 from (Arabidopsis thaliana); contains InterPro entry IPR001236: Lactate/malate dehydrogenase | chr1:19858283-19860605 REVERSE | Aliases: F12M16.14, F12M16_14(evalue: 3e-59, score=225) genbank/nr: gi|21388548|emb|CAD33242.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum] >gi|21388546|emb|CAD33241.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum] (evalue: 6e-66, score=253)">
      <seq>cgaaagcctggtatgacccgagatgatctgttcaacattaatgcgggtattgttaaatctctatgcacggccattattttctcaagccactccaaaggcaaatctatcagatgaggaaattgttgcactcacaaagcgaacccaagatggtgggacagaagttgtagaggccaaggctggaaagggttcagccaccctctcaatggcctatgctggggctatttttgccgatgcttgcttgaaggggttgaatggagttcccgatgttgttgaatgtgcttttgtgcagtccaatgtcaccgagcttcccttcttcgcatccaaggtaagacttgggaaaaatggagtggaggaagtcctagggttgggtccacttaacgactacgagaagcaaggacttgaggctcttaagccagagctgctctcctccattgaaaagggaatcaagtttgccaaagaaaactaaaaaaacaaaattatggtctagttttctatagtgacagttttggatctttttgggtcaattgtttttgtatcctttgcaagtttcttgcagccggaggcttagatttagctcttttgatattatacccaacatttctacaaaataatgtatggcaaactgggggcctatcccatttgccttagtgtggaggtgttattctcacatgaaatcgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="20228" stop="17577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19928" g_stop="19860" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19859" i_stop="19395" i_length="465">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19394" g_stop="19379" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="85" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19378" i_stop="19196" i_length="183">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19195" g_stop="19074" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="207" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19073" i_stop="18830" i_length="244">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18829" g_stop="18712" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="325" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18711" i_stop="18231" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18230" g_stop="17876" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="681" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U334184" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19928" e_stop="19860"/>
          <exon e_start="19394" e_stop="19379"/>
          <exon e_start="19195" e_stop="19074"/>
          <exon e_start="18829" e_stop="18712"/>
          <exon e_start="18230" e_stop="17876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACGGCCATTGCTAAGTACTGCCCCAATGTGAGTATGCTTGTGTAATTATCTCTGTATATGGGGGTTATATATAGGAGATTCTAGAAAAAGTTTCTGATTAATTTTCTCATTTGCTGCTTGTTCTGATAACTTAAAGGCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAGGTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGAAAAGCTAAAGTAAATGTTGCTGGTGCGCGTCTTCTTGTCTAATTCTTTATTTGAATTGATTTTGTTTCGCTTTACATGAAACTGTAAATTCATACAATACTATCTGTCTACTTTACTTACTTTTTGCTTCGTTTTTCAGAGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAAGTAATTTTTCTTTTCTTGTCCCTTGTTATAAAGCTTTTTCTTTTTTTAGTATCTATTATTATCTTCTTTATGTTGTAAGTGTTTGATTGAACATTTTTTAGTATGTATTATCTAAATTGTTATTGGTGATTTCCATATTGTGGCATATTGAGTCTTGTTTTTATCACTAAATTTTGGATACAGGCCACTCCAAAGGCAAATCTATCAGATGAGGAAATTGTTGCACTCACAAAGCGAACCCAAGATGGTGGGACAGAAGTTGTAGAGGCCAAGGCTGGAAAGGGTTCAGCCACCCTCTCAATGGCGTACGTTTCCACTTCAATGTTTTTCTTGATTTATTTTTTTTTCCTGAAGGATTTTCACTTTGATTGCAAGATTTTGTTTACGAATAAGTTATGGTGCTGCCCAATGTCACGGTCAAATATTTAGGAATGTAGAGAAACAAACAAAAAAAGAAACTTTTTTGACATATACTGCCCCAAACCACTTCATTTACTGGCCTTTCCTGTTTGCATACTCGGTTCTAAGCAGTTAGTTTTACTTGTGCAGCTATGCTGGGGCTATTTTTGCCGATGCTTGCTTGAAGGGGTTGAATGGAGTTCCCGATGTTGTTGAATGTGCTTTTGTGCAGTCCAATGTCACCGAGCTTCCCTTCTTCGCATCCAAGGTAATAAGCCTTTTCTTTTCCTACAAAGACACTGGACGTCATGTATACTTTTTTCTTTGAACTGTCTGATTCATTTGGTCATTGCCCTCTTATCATGTGGGTATGAAAAGGTCAAAACAAATTATATAGTTCAAGTTTAGGTTTGTTTAAGCATGTCTGAAGCTGTGTCTATTCTGGATGTGTTGAGGGATAGTTTTGACATCATGAGTCATCGATTGATCTTGATTAAGCATGTCTCATGTGGAATGGTTGGTAGCTTTTCAACAGTGCAAGTCGAATGTGTCAAGAACTAAGTTGACATCCTAGGTTATTATTTGTTGTTAGTCACACACGCATCTGAACGTAAATAGCTCGTTAACTTTGAATCATGGGCTAAATTTGTACTTCCTCTTATCAACTGACTTGTGGGTAATTCACTGTATAAGGTCACTATTTTCATTTTGCTTACTTATACATGTCATTCAATTTGATCGCTTTGCAGGTAAGACTTGGGAAAAATGGAGTGGAGGAAGTCCTAGGGTTGGGTCCACTTAACGACTACGAGAAGCAAGGACTTGAGGCTCTTAAGCCAGAGCTGCTCTCCTCCATTGAAAAGGGAATCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTTGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCCTATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATG-AATCGTTTT</genome_strand>
        <mrna_strand>CGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATTATTTTCTCAA.......................................................................................................................................................................................GCCACTCCAAAGGCAAATCTATCAGATGAGGAAATTGTTGCACTCACAAAGCGAACCCAAGATGGTGGGACAGAAGTTGTAGAGGCCAAGGCTGGAAAGGGTTCAGCCACCCTCTCAATGGC....................................................................................................................................................................................................................................................CTATGCTGGGGCTATTTTTGCCGATGCTTGCTTGAAGGGGTTGAATGGAGTTCCCGATGTTGTTGAATGTGCTTTTGTGCAGTCCAATGTCACCGAGCTTCCCTTCTTCGCATCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACTTGGGAAAAATGGAGTGGAGGAAGTCCTAGGGTTGGGTCCACTTAACGACTACGAGAAGCAAGGACTTGAGGCTCTTAAGCCAGAGCTGCTCTCCTCCATTGAAAAGGGAATCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTTGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCCTATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATGAAATCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313129" ref_strand="+" ref_description="SGN-U313129        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | malate dehydrogenase (NAD), mitochondrial, identical to mitochondrial NAD-dependent malate dehydrogenase GI:3929649 SP:Q9ZP06 from (Arabidopsis thaliana); contains InterPro entry IPR001236: Lactate/malate dehydrogenase | chr1:19858283-19860605 REVERSE | Aliases: F12M16.14, F12M16_14(evalue: 7e-93, score=220) genbank/nr: gi|52139816|gb|AAU29198.1| mitochondrial malate dehydrogenase [Lycopersicon esculentum] (evalue: 3e-112, score=278)">
      <seq>cttttaccttttcctcatttcttttgtatattccgaaatgaggacctccatgttgaaatccatcgtccgccggagctccactgccggagcatcctatgtatctcgccgtggattcgcatcgggatccgcgccggagaggaaagttgcagttttgggggcagccggagggattggacagcctttatctcttctaatgaagcttaaccctttagtatccagcctttcactctacgatatcgccggtactcccggtgttgccgccgatgttagtcacatcaacaccagatctgaggttgccggttttgcaggagaagagcagctagggcaggcactggaaggagctgatgttgttatcattcctgctggtgtgccccgaaagcctggtatgacccgagatgatctgttcaacattaatgcgggtattgttaaatctctatgcacggccattgctaagtactgccccaatgtgagtatgcttgtgtaattatctctgtatatgggggttatatataggagattctagaaaaagtttctgattaattttctcatttgctgcttgttctgataacttaaaggctctggtcaatatgataagcaacccagtgaattccactgtccctattgctgctgaggtgtttaagaaagctggaacttatgatgaaaagaagctctttggagttaccatgcttgatgtggttagggccaagacattttatgctggaaaagctaaagtaaatgttgctgaggtcaatctcccagtagttggtggtcatgctggcataactatcctcccattattttctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="21177" stop="19078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20877" g_stop="20586" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20585" i_stop="20010" i_length="576">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20009" g_stop="19558" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="744" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19557" i_stop="19441" i_length="117">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19440" g_stop="19379" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="806" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U313129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20877" e_stop="20586"/>
          <exon e_start="20009" e_stop="19558"/>
          <exon e_start="19440" e_stop="19379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACCTTTTCCTCATTTCTTTTGTATATTCCGAAATGAGGACCTCCATGTTGAAATCCATCGTCCGCCGGAGCTCCACTGCCGGAGCATCCTATGTATCTCGCCGTGGATTCGCATCGGGATCCGCGCCGGAGAGGAAAGTTGCAGTTTTGGGGGCAGCCGGAGGGATTGGACAGCCTTTATCTCTTCTAATGAAGCTTAACCCTTTAGTATCCAGCCTTTCACTCTACGATATCGCCGGTACTCCCGGTGTTGCCGCCGATGTTAGTCACATCAACACCAGATCTGAGGTTGTTTTCTACTCTCTCTCTCCCTTACGTTTTCTACTTGGAATTCTCTGTTTTTGTTCATTTTGTATGAGTATTGGCGAAGATTACTAATGAGGATTTGTATTAACTAAATTGGAACTAAGACGTATCTGGTAGGTTGATTGATTCTGTTAACATGCTTTTTTGATTTCCTGAATCTCGAGCTCCGATCCGATTTACGTTAGTCGATTTCACTAGTGAGTTTGAGTTTGTTGCTTGCTTCATTCCACTATTTAGTCTATTTTTCGAGTGTGTATCACATAAGTACATATAGATTCGTGAATGAGTTACTAAAGTACAAGGTTTTGTGCTGAAAACTAGGTGTTTGTCAGCAATGAAGAGTTCAACACCAGATCATTTTACTCTTTGCATCAGTTGCCTGTTTTAATTTCAAGATGATTTGATTACAATGTTGTTTTAGGCGTCCACTGTCAAGTAGTTAACGATTTGAAGCCCATCTACCTTTTGTGTCCTAAACCCCTCTAAATAGTGTTTGTGCCAGTTTATGGTTTTCTTTCCTGCAATTCTGATCTGTAAATATATTTGTGGACTTTGCAGGTTGCCGGTTTTGCAGGAGAAGAGCAGCTAGGGCAGGCACTGGAAGGAGCTGATGTTGTTATCATTCCTGCTGGTGTGCCCCGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACGGCCATTGCTAAGTACTGCCCCAATGTGAGTATGCTTGTGTAATTATCTCTGTATATGGGGGTTATATATAGGAGATTCTAGAAAAAGTTTCTGATTAATTTTCTCATTTGCTGCTTGTTCTGATAACTTAAAGGCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAGGTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGAAAAGCTAAAGTAAATGTTGCTGGTGCGCGTCTTCTTGTCTAATTCTTTATTTGAATTGATTTTGTTTCGCTTTACATGAAACTGTAAATTCATACAATACTATCTGTCTACTTTACTTACTTTTTGCTTCGTTTTTCAGAGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAA</genome_strand>
        <mrna_strand>CTTTTACCTTTTCCTCATTTCTTTTGTATATTCCGAAATGAGGACCTCCATGTTGAAATCCATCGTCCGCCGGAGCTCCACTGCCGGAGCATCCTATGTATCTCGCCGTGGATTCGCATCGGGATCCGCGCCGGAGAGGAAAGTTGCAGTTTTGGGGGCAGCCGGAGGGATTGGACAGCCTTTATCTCTTCTAATGAAGCTTAACCCTTTAGTATCCAGCCTTTCACTCTACGATATCGCCGGTACTCCCGGTGTTGCCGCCGATGTTAGTCACATCAACACCAGATCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGTTTTGCAGGAGAAGAGCAGCTAGGGCAGGCACTGGAAGGAGCTGATGTTGTTATCATTCCTGCTGGTGTGCCCCGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACGGCCATTGCTAAGTACTGCCCCAATGTGAGTATGCTTGTGTAATTATCTCTGTATATGGGGGTTATATATAGGAGATTCTAGAAAAAGTTTCTGATTAATTTTCTCATTTGCTGCTTGTTCTGATAACTTAAAGGCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAGGTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGAAAAGCTAAAGTAAATGTTGCTG.....................................................................................................................AGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329966" ref_strand="+" ref_description="SGN-U329966        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>atttctttttatcatattagatttcgattaaatttgaaatttttttattgaatagcagacccttgaattcaaacatgtgatttaagacgattgttcgtatgtccaggggatgaatcttgtttgaaatagatggtatgaatttgtcaaacattcaacaagaaattcttcgtgatcatatataattatttttaagaatgtgactaaagacgattgttcgtatgtctgggggatgaatcttgtctgaaatagatggtatgaatttatcgaatatccaacaaaaaattctttgtgatcatacgtaattgttgtcaagcatgtgattaaagacgattgttcgtatatccgggagatgaatcttgtctgaaatagatggtatgaatttgtcaaacattcaacaagaaattcttcgtgatcatgcataattattttcaagaatgtgactaaatacgattgttcgtatgtctggggggatgattcttgtctgaattagatagtatgaatttatcaaatattcaacaagaaattcttcgtgatcatacgtaattattgtcaagcatgtgatgaaagacgattgtttgtatatccaggggatgaatcttttttttgaaagagatggtatgaatttgtcaaataatcaacaagaaattcttcgtgatcatacataattattttcaagcatgtgactaaagacgattgttcgtatgtatgggggatggatcttgtctgaaatagatggtatgaatttatcaaatattcagcaagaaattcttcgtgatcatacataattattgtcaagcaagtgattaaagacgatttttcgtatatccagggaatgaatcttgtttgaaatagatggtataaatttgtcaaatattgtgatcatacataattatttcaagcatgtgactaaagacgattgttcgtatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="+" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="20690" stop="22339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20990" g_stop="21061" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21062" i_stop="21171" i_length="110">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21172" g_stop="21230" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="129" r_length="56" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21231" i_stop="21337" i_length="107">
            <donor d_prob="0.826" d_score="0.90"/>
            <acceptor a_prob="0.580" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21338" g_stop="22087" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="872" r_length="743" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="928" polyA_stop="939"/>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="+" ref_id="SGN-U329966" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20990" e_stop="21061"/>
          <exon e_start="21172" e_stop="21230"/>
          <exon e_start="21338" e_stop="22087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTC-TTTTATCATATTAGATCTCGATTAAATTTGAAACTTTTTTATTGAATAGTAGACTCTTGAATTCAAACAAGACGATTATTCATATGTCCAGGGATGAATCTTGTTTGAATTAGATGGTATGAATTTGTCAAACATTCAACAAAAAATTCTTCGTGATCATACATAATTATTTTCAAGCATGTGATTAAAGACGATTGTTCGTATGTCCAGGGGATGAATCTTGTTTGAAACAAATGGTATGAATTTGTTGAATATTCAACAAGAAATTCTTCGTGATCATACATAATTATTTTCGAGAATGTGACTGTTCGTATATCCAAGGGATGAATCTTGTCTGAAACAGATGATATAAATTTATCAAACATGCAACAAGAAATTCTTCGTGATCATGCATAATTATTTTCAAGAATGTGACTAAATACGATTGTTCGTATGTCTGGGAGATGAATCTTGTCTGAAATAGATAGTATGAATTTATCAAATATTCAACAAGAAATTCTTCGTGATCATACATAATTATTGTCAAGCATGTGATTAAAGACGATTGTTCATATATTCAGGGGATGAATGTTTTTTTTTTGAAATAGATGGTATGAATTTGTCAAATATTCAACAAGAAATTCTTCGTGATCATACATAATTATTTTCAAGGATGTGACTAAAGACGATTGTTCGTATGTAT-GGGGAATAAATCTTGTCTGAAATAGATGGTATGAATTTATCAAATATTCAGCAAGAAATTCTTCGTGATCATACATAATTATTTTCAAGCATGTGATTAAAGACGATTGTTCATATATTCAGGGGATGAATCTTTTTTTTGAAATAGATGGTATGAATTTGTCAAATATTCAACAAGAAATTCTTCGTGATCATACATAATTATTTTCAAGCATGTGATTAAAGACGGTTGTTCGTATGTCCAAGGGATGAATCTTGTTTGAAACAGATGGTATGAATTTATCGAATATTCAACAAGAAAGAAATTCTTCGTGATCATACATAATTATTGTCAAGCATGTGACTAAAGACGATTGTTCGTATGTCTGGGGGATGAATCTTATCTGAAATAGATGGTATGAATTTATCAAAT</genome_strand>
        <mrna_strand>ATTTCTTTTTATCATATTAGATTTCGATTAAATTTGAAATTTTTTTATTGAATAGCAGACCCTTGAATTCAAA..............................................................................................................CATGTGATTTAAGACGATTGTTCGTATGTCCAGGGGATGAATCTTGTTTG-AA-ATA-G...........................................................................................................ATGGTATGAATTTGTCAAACATTCAACAAGAAATTCTTCGTGATCATATATAATTATTTTTAAGAATGTGACTAAAGACGATTGTTCGTATGTCTGGGGGATGAATCTTGTCTGAAATAGATGGTATGAATTTATCGAATATCCAACAAAAAATTCTTTGTGATCATACGTAATTGTTGTCAAGCATGTGATTAAAGACGATTGTTCGTATA-TC-CGGGA-G-ATGAATCTTGTCTGAAATAGATGGTATGAATTTGTCAAACATTCAACAAGAAATTCTTCGTGATCATGCATAATTATTTTCAAGAATGTGACTAAATACGATTGTTCGTATGTCTGGGGGGATGATTCTTGTCTGAATTAGATAGTATGAATTTATCAAATATTCAACAAGAAATTCTTCGTGATCATACGTAATTATTGTCAAGCATGTGATGAAAGACGATTGTTTGTATATCCAGGGGATGAATCTTTTTTTTGAAAGAGATGGTATGAATTTGTCAAATAATCAACAAGAAATTCTTCGTGATCATACATAATTATTTTCAAGCATGTGACTAAAGACGATTGTTCGTATGTATGGGGGATGGATCTTGTCTGAAATAGATGGTATGAATTTATCAAATATT---C-AGCAAGAAATTCTTCGTGATCATACATAATTATTGTCAAGCAAGTGATTAAAGACGATTTTTCGTATATCCAGGGAATGAATCTTGTTTGAAATAGATGGTATAAATTTGTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318531" ref_strand="+" ref_description="SGN-U318531        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:13270758-13273637 REVERSE | Aliases: T16B12.6, T16B12_6(evalue: 2e-12, score=71.6) genbank/nr: gi|35187466|gb|AAQ84324.1| fiber protein Fb32 [Gossypium barbadense](evalue: 2e-10, score=71.6)">
      <seq>gactgtgcttgtcaccattaataatattttttctctttttatatgtatatgcatctccttcatctttttagctcagtgcttttgcttcagcgtttaatctttgcctattgatcaaatttatgtcttctttgtgcatcttcggtgacactgctattttggataaagacattgcctagtctttaaatgatcatgaagtgttatcaggatatagtttcctgattgattcatagattgcaccaatggagaaatccagaagcaaaagttgggttgggagcatttaccacaagtttgaggttgtgtgtcaggaggtcgatgaatttgtaactaaggacacagttaagtatgtcgagaatcaggtgcaaactgttggtgcaaacatgaaaaagttttactctggtgtggtgccagagtttcttatccctgtggacagtcatgtaaaaaaagaagcacaggctgtcaatgagaagccaaagcacgccagtgacactcatactagttcagtggccaacactactcagaaccctatccaagagaaatcatgtcagaatcagaattcccttgaaagtcatgctgcttcaacttcaactgaacttgatggtgtagcttctgaagaagcagaaattgatctttctgtaggaaatgagtgtgccactgcgatttgtaagaactcatgtaatgtttttaaagagaatatgacaagggaggaagcactggtagttgacaaaccaagtacttcagaagacagagtttcatctgaatcctgttctgacaaagattcgaaagataccatgtgctatagcttttcagatgatggtaagtgtttttctgatgtatcaagctctcagattatacgacaagatgatatggtcggggaggaacaaccacttgctaagggatcaagttcatttttggataatttgtctacatcacaactcacggcctctattaatgaaaaaaatgtttgatacttctcctgatgctatcaactgtatttctaatgtatcaagtagtcaaatggttttgcaacggaacatcactagggaggtggaacctgtcactgatcaatcaatttcctttggagatatggctctatcaaagtcattatcattttcaatggaggaaagtgaaggaaatcccaccatgactaagttacaacgtccaacttcagtttatgatacagaacttaggaccaacccagaggatgagagcatttccaatgcttcaataactctgacgaatttgcaagacaatatcatcagtgaggatcgacttgcatccaaggaatcaagttttgtcaaagataaaagtttgccactaaccccagcatttgcatctgttatacctccttcacgaaatgatgcaggatttggggcgtccattgccgcgagtaagagttttttgggtgatgttacttttgtatctgaagagtctagtacaaccttggcattagaagatgctccaagcgcacttcagtcatctgaacttgtactttctcgtgttatggagaacaaaagtatggatgttgacactggaatatcaaactgttctctgttaaaagaatcttcaagcctgtcaacttcctcaattggaaactgtatgcaggaagccgagtctgatttaagtatcttcactggccactcatctgccttgcctacttccttagtgagtgcaaacaatgttgtttctgccaatccagttctctcaagtactctgttgacagatttcagtgaagtaaatgcctctagttctcacgagttggttggaaatggtaggtccgttcaaaatgacctcgagtgtagaataaaagggttgtgggatttcactagaggaacctctgtggatgtatgaatgatagctccattgatcttccgggcatggaaacaattgatctaactgataaggaattgcccaaggaaagttgtgccttcattgactacaaattacaccatctcgtttcttctaggccaagaaaatataagtcgtacaaggaattgatacaggaggcatttgctcctcgaaagagaagaataaaggaatacgagcaattggctgttttgtatgcagacgtggatgctgaaacgagccagcacgttgagctctctcaattaccttctcttccttcaccatgtttacactcaacggaatcgtccacatgcaacatctgtgaacctgagtgggagctcctgtaaatgagccttttttcctgtgaaaacaaccccatgataataatttctgctgagaagtctctctttgtaaaggttccgctataacggttagcataattgagctaatcattagtcctactgtgagattaatggtagaaactacatcttatttttccctttcatataataagataacaatttttgataaatattttgatctcttttgttcacttgtgacattgtctcagcattaaggttttggagacatgatcaaagagcccagctggttttgagtgttatttcttgattctaagcaatgtacccaaatttctaatgtcaaaaaaaaaaaaaaaaagttgttttgttctcaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="28355" stop="22254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28056" g_stop="27916" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27915" i_stop="26329" i_length="1587">
            <donor d_prob="0.257" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26328" g_stop="26141" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="329" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26140" i_stop="25961" i_length="180">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25960" g_stop="24562" g_length="1399"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="1729" r_length="1400" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24561" i_stop="24427" i_length="135">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24426" g_stop="24359" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1730" r_stop="1797" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24358" i_stop="23835" i_length="524">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23834" g_stop="23793" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1798" r_stop="1839" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23792" i_stop="23301" i_length="492">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23300" g_stop="23152" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1840" r_stop="1988" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23151" i_stop="23071" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23070" g_stop="22555" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1989" r_stop="2504" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2535" polyA_stop="2558"/>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U318531" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2503</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28056" e_stop="27916"/>
          <exon e_start="26328" e_stop="26141"/>
          <exon e_start="25960" e_stop="24562"/>
          <exon e_start="24426" e_stop="24359"/>
          <exon e_start="23834" e_stop="23793"/>
          <exon e_start="23300" e_stop="23152"/>
          <exon e_start="23070" e_stop="22555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTGCTTGTCACCATTAATAATATTTTTTCTCTTTTTATATGTATATGCATCTCCTTCATCTTTTTAGCTCAGTGCTTTTGCTTCAGCGTTTAATCTTTGCCTATTGATCAAATTTATGTCTTCTTTGTGCATCTTCGGTATGTTTTCGTATTTGAGTCAACTGAATTTGGGTTTTTTTTTGTTTTTGGTTCTTTGAGAAGCCCTTATTTTTTTGGGGCCTAAAGCCCTTGTAGAGGATATGGGTAATTTTTTTCTTTTGTTTGTTTGGTTGGAATTGAATTAAAGTTGAGACCTTGTGATAGTTTAGTTCTTGTTTTTTGGGAATTCTCAGATGATAAAGTTGACTGATTTCTACTGTAATTTAGTTCATTAAGCTGCTGATCATTGGTTTTTGATGTGTGATTATGCTTTTTTTTTCCTTGGCTTTGATGTTTTGTTTACATAAGGTATTGTGTTCCTGTAAAGATAGGATCTTTCTACCTTTAGGGTACGGGTAAGGTCTGTGTAGACCGCACTAAAGTGGTTATGCTGTTGTTGTTGAAAAGATTGAATCTTTGTTCATATTGTTCCTATCTTGTTATTTCAAGAGCTTGATCATTACAAATGCTTACACCCCAAACTTGTAATCGATTCGTCCCCTAATAGTGTGTTGTATTTGTTCTTGTTACGTTGATATTGGGCCATCGAATTGCACGATATTAATTCGACTTTTAATGGTGTGATGGACCCCTTTGTGCTTGAAATCTCTATGTACTCTATCTGATACTTTTTTTCTTGGTGTATACTGTAGTTAAGGATATGGGTAATTTTTTTCTTTTGTTTGGTTAGTATAGAAATTAAAGTTGAGACCTTGTGATAGTTTAGTTCTTTTTTTGGGAATTCTCAGATGAGGAAGTTGACTGGCTTATGCTGTAATTTAGTTCGTTAAGGTGATGATCGTTGGTTTTTGATGTGTGATTATGTTTTTTTGTTGGCTTTGATGTTTTGTTTTACATAAGATTTTGTGTTCTTGAAAGGATGGAACCTTTCTACCTCTAAGGTAGGGGTAACGTTTCCATACAGTCTACCCTCTTCAGACTCCACTTTACGGGACTACAGTGATTACTTTTTTGTTGTTGAAAAGATTGAATCTTTGTTCATATTGTCCCTTTGTTGTAATTGTAAGAGCTTGATCATTACAAATGCTTTGCTGTCTGCTTTGCTTCTTAATTTTGTACGACCTAGGTTCTTTTTTTTCCTACTCAAATACCCCAAACTTGTAATCTAATCATCCCTAAATAGTGTGTAGTGTTTGTTCTTATTAGTTTGATATTGGGCCATTGACTTGCATGATATTAATTAAATTTTAGTAGTGTGGTGTACCCCTTTTGTGCTTGAAATCTCTCTGTACTCTATCTGCTAATGGTGTTATAGATTGGTTACTTGTTTAGTGGTTTCTAATTGATAAGTCTGAGAAGTTAACAGCTTTCTATTGTACTTAGATACCAAGGTAGTCGATATTGATTTGTCTTGTGTTGCTAAGAAATTACCCTTAAGGATTTTAAGATGATACCAAAACTTTTAAAATTTTCTGTAACTTTTGCCTTCTGTAGATTTTCGAGGAAGCTGAATTAAGCTGCATTAGGGTTTCTCAATGATGTGCTTGGCTGCCTAGATTTATGTCTCCTGACTTATGTTTCAAAATGCTTAATCATGATGTTTATGCAGATTATTGCTTTTGGCAGGTGACACTGCTATTTTGGATAAAGACATTGCCTAGTCTTTAAATGATCATGAAGTGTTATCAGGATATAGTTTCCTGATTGATTCATAGATTGCACCAATGGAGAAATCCAGAAGCAAAAGTTGGGTTGGGAGCATTTACCACAAGTTTGAGGTTGTGTGTCAGGAGGTCGATGAATTTGTAACTAAGGTATGTAAATGTGATCCTTTTTGGCCATTTACTACTTCCAATACTTTGGTATATCTGCTTCCTCTTTGGTTGTTTTGTTTCCTTGGAATCTATATGTTTATATTGTGTTGGAATGGACAGAACTTTGTAACTATCTTACGAGTAGTTCGGCTTTTATTTGACTTACTTCTTAAATATTAGGACACAGTTAAGTATGTCGAGAATCAGGTGCAAACTGTTGGTGCAAACATGAAAAAGTTTTACTCTGGTGTGGTGCCAGAGTTTCTTATCCCTGTGGACAGTCATGTAAAAAAAGAAGCACAGGCTGTCAATGAGAAGCCAAAGCACGCCAGTGACACTCATACTAGTTCAGTGGCCAACACTACTCAGAACCCTATCCAAGAGAAATCATGTCAGAATCAGAATTCCCTTGAAAGTCATGCTGCTTCAACTTCAACTGAACTTGATGGTGTAGCTTCTGAAGAAGCAGAAATTGATCTTTCTGTAGGAAATGAGTGTGCCACTGCGATTTGTAAGAACTCATGTAATGTTTTTAAAGAGAATATGACAAGGGAGGAAGCACTGGTAGTTGACAAACCAAGTACTTCAGAAGACAGAGTTTCATCTGAATCCTGTTCTGACAAAGATTCGAAAGATACCATGTGCTATAGCTTTTCAGATGATGGTAAGTGTTTTTCTGATGTATCAAGCTCTCAGATTATACGACAAGATGATATGGTCGGGGAGGAACAACCACTTGCTAAGGGATCAAGTTCATTTTTGGATAATTTGTCTACATCACAACTCACGGCCTCTATTAATG-AAAAAATGTTTGATACTTCTCCTGATGCTATCAACTGTATTTCTAATGTATCAAGTAGTCAAATGGTTTTGCAACGGAACATCACTAGGGAGGTGGAACCTGTCACTGATCAATCAATTTCCTTTGGAGATATGGCTCTATCAAAGTCATTATCATTTTCAATGGAGGAAAGTGAAGGAAATCCCACCATGACTAAGTTACAACGTCCAACTTCAGTTTATGATACAGAACTTAGGACCAACCCAGAGGATGAGAGCATTTCCAATGCTTCAATAACTCTGACGAATTTGCAAGACAATATCATCAGTGAGGATCGACTTGCATCCAAGGAATCAAGTTTTGTCAAAGATAAAAGTTTGCCACTAACCCCAGCATTTGCATCTGTTATACCTCCTTCACGAAATGATGCAGGATTTGGGGCGTCCATTGCCGCGAGTAAGAGTTTTTTGGGTGATGTTACTTTTGTATCTGAAGAGTCTAGTACAACCTTGGCATTAGAAGATGCTCCAAGCGCACTTCAGTCATCTGAACTTGTACTTTCTCGTGTTATGGAGAACAAAAGTATGGATGTTGACACTGGAATATCAAACTGTTCTCTGTTAAAAGAATCTTCAAGCCTGTCAACTTCCTCAATTGGAAACTGTATGCAGGAAGCCGAGTCTGATTTAAGTATCTTCACTGGCCACTCATCTGCCTTGCCTACTTCCTTAGTGAGTGCAAACAATGTTGTTTCTGCCAATCCAGTTCTCTCAAGTACTCTGTTGACAGATTTCAGTGGTAAGTGGATTCCTCTTTCAACCCTCTGGTCTAGTAGTAAACGATAAACAATGTCCAGTTTTTTGTTCTCTCTGTTTCTACTTTCTTTTTTCTTTCTATTGTATCCATTGCTTCAATAGATTTCTCCTTTTGCAGAAGTAAATGCCTCTAGTTCTCACGAGTTGGTTGGAAATGGTAGGTCCGTTCAAAATGACCTCGAGTGTTGTCCAAGCCCTCAGCTGATATATCCCGCAGAAATAGGTACTATATGGAGGAACTTTGTTTTTTTCTTCTTTCTCTCCTTTGAAATTCGTGTGTTTCTAACAAAGTCACAATCAAACTACGGCAATGTAGCTGAGATGATGATGCATGTATTAAACGATGAGAATAATGAGAAATGAGTGCAAACTCAGTTCTTTGCTGCAATACATGCTTACTACGTAGTAGTTGATTGCCTGTGTGTGCTGCAGGGATGCTATAACATATCATTTTCCCGGAAGGAGAGTTCACAGTTTAATTGTGGGTTTGAAAATTTGAGCTCTATAAGGCAGCATCATATGATCAAAATGAAATTAATCAGTCCCATATTTTCCTTGTTCTCCTCCCCTCCCATATAAAAAAGAAATGAAAAAGGAAATTTGAGGGTGAAGGGATGATACTGACTCGAATGCTTTGTCTACTTCTTTTCAGTATACCGAAATGAATATTGTTGGATCAGCTGTATCTCTGCGAGTATAAGACTTATGGAAGAATAAAAGGGTTGTGGGATTTCACTAGAGGAACCTCTGTGGTTCGTGCTGCTCCTCTTGGACTCTATTTTAACCTATGGCCTTCGACATAACCTATGTTCTTTTTTCTTTATTTTTTGCGTCCGGGTATATTGTTGTTGAAGAATAAAAGGATTGTTCTTTTATAGAATTGACAGAAGATTTCTGGATGATATTCCTTCTTCAGAAAGATCATACCAGTTGATCGCTACTTCATTTAATATTGTATCCTCATCATTTCATAGAACGCATAGTATTTTGAGATTTAATATCAGTATTTGGCCAAGTCTACCTGAATAAGGTTTGATCTGTTTCATGGAGGTATAAATTAGCGAGGATTGATGCGGATCCATTAGAAAAAATTTGGTGGTTTATAGGTTGGGAGTAAATAACGTGGAATTATACATGGTCATGGATACTACTTTCTTCAGATTGGTGGCTTGCTTCTCAAATTTGAGCATCTGTATCTTTGCTTTTCATCTGAGATCTACTTACTGCTTGATGTATTTTTGCAGGATGTATGAATGATAGCTCCATTGATCTTCCGGGCATGGAAACAATTGATCTAACTGATAAGGAATTGCCCAAGGAAAGTTGTGCCTTCATTGACTACAAATTACACCATCTCGTTTCTTCTAGGCCAAGAAAATATAAGTCGTACAAGGTAACGTCTCTATTTATAAGCTTCCCTTCTACTTCAAATCCTGAACTCAATTAACGTTCAACTTTATCTGCTATACTACAGGAATTGATACAGGAGGCATTTGCTCCTCGAAAGAGAAGAATAAAGGAATACGAGCAATTGGCTGTTTTGTATGCAGACGTGGATGCTGAAACGAGCCAGCACGTTGAGCTCTCTCAATTACCTTCTCTTCCTTCACCATGTTTACACTCAACGGAATCGTCCACATGCAACATCTGTGAACCTGAGTGGGAGCTCCTGTAAATGAGCCTTTTTTCCTGTGAAAACAACCCCATGATAATAATTTCTGCTGAGAAGTCTCTCTTTGTAAAGGTTCCGCTATAACGGTTAGCATAATTGAGCTAATCATTAGTCCTACTGTGAGATTAATGGTAGAAACTACATCTTATTTTTCCCTTTCATATAATAAGATAACAATTTTTGATAAATATTTTGATCTCTTTTGTTCACTTGTGACATTGTCTCAGCATTAAGGTTTTGGAGACATGATCAAAGAGCCCAGCTGGTTTTGAGTGTTATTTCTTGATTCTAAGCAATGTACCCAAATTTCTAATGTCA</genome_strand>
        <mrna_strand>GACTGTGCTTGTCACCATTAATAATATTTTTTCTCTTTTTATATGTATATGCATCTCCTTCATCTTTTTAGCTCAGTGCTTTTGCTTCAGCGTTTAATCTTTGCCTATTGATCAAATTTATGTCTTCTTTGTGCATCTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACACTGCTATTTTGGATAAAGACATTGCCTAGTCTTTAAATGATCATGAAGTGTTATCAGGATATAGTTTCCTGATTGATTCATAGATTGCACCAATGGAGAAATCCAGAAGCAAAAGTTGGGTTGGGAGCATTTACCACAAGTTTGAGGTTGTGTGTCAGGAGGTCGATGAATTTGTAACTAAG....................................................................................................................................................................................GACACAGTTAAGTATGTCGAGAATCAGGTGCAAACTGTTGGTGCAAACATGAAAAAGTTTTACTCTGGTGTGGTGCCAGAGTTTCTTATCCCTGTGGACAGTCATGTAAAAAAAGAAGCACAGGCTGTCAATGAGAAGCCAAAGCACGCCAGTGACACTCATACTAGTTCAGTGGCCAACACTACTCAGAACCCTATCCAAGAGAAATCATGTCAGAATCAGAATTCCCTTGAAAGTCATGCTGCTTCAACTTCAACTGAACTTGATGGTGTAGCTTCTGAAGAAGCAGAAATTGATCTTTCTGTAGGAAATGAGTGTGCCACTGCGATTTGTAAGAACTCATGTAATGTTTTTAAAGAGAATATGACAAGGGAGGAAGCACTGGTAGTTGACAAACCAAGTACTTCAGAAGACAGAGTTTCATCTGAATCCTGTTCTGACAAAGATTCGAAAGATACCATGTGCTATAGCTTTTCAGATGATGGTAAGTGTTTTTCTGATGTATCAAGCTCTCAGATTATACGACAAGATGATATGGTCGGGGAGGAACAACCACTTGCTAAGGGATCAAGTTCATTTTTGGATAATTTGTCTACATCACAACTCACGGCCTCTATTAATGAAAAAAATGTTTGATACTTCTCCTGATGCTATCAACTGTATTTCTAATGTATCAAGTAGTCAAATGGTTTTGCAACGGAACATCACTAGGGAGGTGGAACCTGTCACTGATCAATCAATTTCCTTTGGAGATATGGCTCTATCAAAGTCATTATCATTTTCAATGGAGGAAAGTGAAGGAAATCCCACCATGACTAAGTTACAACGTCCAACTTCAGTTTATGATACAGAACTTAGGACCAACCCAGAGGATGAGAGCATTTCCAATGCTTCAATAACTCTGACGAATTTGCAAGACAATATCATCAGTGAGGATCGACTTGCATCCAAGGAATCAAGTTTTGTCAAAGATAAAAGTTTGCCACTAACCCCAGCATTTGCATCTGTTATACCTCCTTCACGAAATGATGCAGGATTTGGGGCGTCCATTGCCGCGAGTAAGAGTTTTTTGGGTGATGTTACTTTTGTATCTGAAGAGTCTAGTACAACCTTGGCATTAGAAGATGCTCCAAGCGCACTTCAGTCATCTGAACTTGTACTTTCTCGTGTTATGGAGAACAAAAGTATGGATGTTGACACTGGAATATCAAACTGTTCTCTGTTAAAAGAATCTTCAAGCCTGTCAACTTCCTCAATTGGAAACTGTATGCAGGAAGCCGAGTCTGATTTAAGTATCTTCACTGGCCACTCATCTGCCTTGCCTACTTCCTTAGTGAGTGCAAACAATGTTGTTTCTGCCAATCCAGTTCTCTCAAGTACTCTGTTGACAGATTTCAGTG.......................................................................................................................................AAGTAAATGCCTCTAGTTCTCACGAGTTGGTTGGAAATGGTAGGTCCGTTCAAAATGACCTCGAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATAAAAGGGTTGTGGGATTTCACTAGAGGAACCTCTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATGAATGATAGCTCCATTGATCTTCCGGGCATGGAAACAATTGATCTAACTGATAAGGAATTGCCCAAGGAAAGTTGTGCCTTCATTGACTACAAATTACACCATCTCGTTTCTTCTAGGCCAAGAAAATATAAGTCGTACAAG.................................................................................GAATTGATACAGGAGGCATTTGCTCCTCGAAAGAGAAGAATAAAGGAATACGAGCAATTGGCTGTTTTGTATGCAGACGTGGATGCTGAAACGAGCCAGCACGTTGAGCTCTCTCAATTACCTTCTCTTCCTTCACCATGTTTACACTCAACGGAATCGTCCACATGCAACATCTGTGAACCTGAGTGGGAGCTCCTGTAAATGAGCCTTTTTTCCTGTGAAAACAACCCCATGATAATAATTTCTGCTGAGAAGTCTCTCTTTGTAAAGGTTCCGCTATAACGGTTAGCATAATTGAGCTAATCATTAGTCCTACTGTGAGATTAATGGTAGAAACTACATCTTATTTTTCCCTTTCATATAATAAGATAACAATTTTTGATAAATATTTTGATCTCTTTTGTTCACTTGTGACATTGTCTCAGCATTAAGGTTTTGGAGACATGATCAAAGAGCCCAGCTGGTTTTGAGTGTTATTTCTTGATTCTAAGCAATGTACCCAAATTTCTAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346362" ref_strand="+" ref_description="SGN-U346362        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G16670.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from (Arabidopsis thaliana) | chr1:5697332-5699762 FORWARD | Aliases: F19K19.4, F19K19_4 (evalue: 8e-21, score=97.8) genbank/nr: gi|9989053|gb|AAG10816.1| Unknown protein [Arabidopsis thaliana] (evalue: 6e-19, score=97.8)">
      <seq>cgacatttacttaaatagaaagaaaaaggaaatagtctcaatgaatacctaatctaattatacgtattccaggtcatatgtacatcttaaaatataaatgaagtgaaaaagctcctaattccacacgctatggagcaaaatcctacaaagaaataaattcaacagatataaggaagatagtcgaggaaatttgatttaccatgatgtgtttgactcagcttttacgatcatctattgtagtaaaagtcattgttccatgtgtcgctgttgtgttcgcagatgaagaagaatcaacttgtttacccgagccagcagatagcgtgtctgatgatgtatttttctgattcctgagacttactagatcggataacatgcctggctcagatatctcttcatcattcacttgcatctcaccagtcagcaatttcaccacagtggacatcgatggtcggcttttgggcatgacttgggtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="+" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="40139" stop="41214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40439" g_stop="40914" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="+" ref_id="SGN-U346362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40439" e_stop="40914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATTTACTTAAATAGAAAGAAAAAGGAAATAGTCTCAATGAATACCTAATCTAATTATACGTATTCCAGGTCATATGTACATCTTAAAATATAAATGAAGTGAAAAAGCTCCTAATTCCACACGCTATGGAGCAAAATCCTACAAAGAAATAAATTCAACAGATATAAGGAAGATAGTCGAGGAAATTTGATTTACCATGATGTGTTTGACTCAGCTTTTACGATCATCTATTGTAGTAAAAGTCATTGTTCCATGTGTCGCTGTTGTGTTCGCAGATGAAGAAGAATCAACTTGTTTACCCGAGCCAGCAGATAGCGTGTCTGATGATGTATTTTTCTGATTCCTGAGACTTACTAGATCGGATAACATGCCTGGCTCAGATATCTCTTCATCATTCACTTGCATCTCACCAGTCAGCAATTTCACCACAGTGGACATCGATGGTCGGCTTTTGGGCATGACTTGGGTGCAT</genome_strand>
        <mrna_strand>CGACATTTACTTAAATAGAAAGAAAAAGGAAATAGTCTCAATGAATACCTAATCTAATTATACGTATTCCAGGTCATATGTACATCTTAAAATATAAATGAAGTGAAAAAGCTCCTAATTCCACACGCTATGGAGCAAAATCCTACAAAGAAATAAATTCAACAGATATAAGGAAGATAGTCGAGGAAATTTGATTTACCATGATGTGTTTGACTCAGCTTTTACGATCATCTATTGTAGTAAAAGTCATTGTTCCATGTGTCGCTGTTGTGTTCGCAGATGAAGAAGAATCAACTTGTTTACCCGAGCCAGCAGATAGCGTGTCTGATGATGTATTTTTCTGATTCCTGAGACTTACTAGATCGGATAACATGCCTGGCTCAGATATCTCTTCATCATTCACTTGCATCTCACCAGTCAGCAATTTCACCACAGTGGACATCGATGGTCGGCTTTTGGGCATGACTTGGGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324081" ref_strand="+" ref_description="SGN-U324081        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G16670.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from (Arabidopsis thaliana) | chr1:5697332-5699762 FORWARD | Aliases: F19K19.4, F19K19_4 (evalue: 3e-94, score=341) genbank/nr: gi|18394385|ref|NP_564003.1| protein kinase family [Arabidopsis thaliana] gi|16649103|gb|AAL24403.1| Unknown protein [Arabidopsis thaliana] gi|23197888|gb|AAN15471.1| Unknown protein [Arabidopsis thaliana](evalue: 2e-92, score=341)">
      <seq>tcatctctcccaaagtcatctcttccattttcttctgctgcctgcttcaacaagattggcaggggagttcttttttctgtgggttgacctgcttttctttctgttgaaacaaaaacactggtgtaatgacttgttttggtctctgcttaggagggaaggcatctccccgtcacaaccatgtagtagaaattgatgaagaaatttcaaccattgagaatgcaagggtgtacagctaccgggaattgcgtgctgcaaccgaagatttttgccctgtaaacaaaatagggaaaggagggtttggttctgtctacaaggggaggctaagagatggaaaaatggctgctattaaggtactttctgttgaatcaaaacaaggtgtaaaggagtttttgacagaaataaaggtgatctcaaatatagaacatgaaaacctggtgaagttgtatggttgttgtgcggaaggggatcatagaatattggtgtataactacctggaaaataatagtctttcccaaactctgcttggtggtgcacatagtagcctccagtttagctggataacacgaactaagatatgcattggtgttgcacgaggacttgcattcctccacgaagaagtccagccttatatagttcatagagacattaaagcaagtaacatacttctcgacaaagaccttaccccaaaaatttcagattttggtcttgctaagcttattccagctgatttgacccatgttagcacccgtgtggcaggaacactaggttatttggcccctgaatatgcaatgagagggcagttgacacggaaagcagatgtatacagttttgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="44799" stop="41473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44499" g_stop="44447" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44446" i_stop="43490" i_length="957">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43489" g_stop="43345" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="198" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43344" i_stop="42913" i_length="432">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42912" g_stop="42797" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="314" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42796" i_stop="42716" i_length="81">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42715" g_stop="42505" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="525" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42504" i_stop="42415" i_length="90">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42414" g_stop="42177" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="763" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42176" i_stop="41846" i_length="331">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41845" g_stop="41773" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="836" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U324081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44499" e_stop="44447"/>
          <exon e_start="43489" e_stop="43345"/>
          <exon e_start="42912" e_stop="42797"/>
          <exon e_start="42715" e_stop="42505"/>
          <exon e_start="42414" e_stop="42177"/>
          <exon e_start="41845" e_stop="41773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTCCCAAAGTCATCTCTTCCATTTTCTTCTGCTGCCTGCTTCAACAAGTAAGTAAATTCAATTTTGTGTCTTTTTCTCTTCAATTTCAACTTTCTTCTCTTCCCTGCAATTTCTCTACTTTAATTGAGCTTAGTTTACCTGTTTTTTACCTTCAAAACGAGCTAAATTTCAGCATTTTTGGAGTTTTTTTGTGCTTTTTGATTGATCAATCAGGTTAGTGATTTCTCTTTAGGCGGATCTGAAAAGAAGAAGTTAATGGATTGTTTTGGAGTACATACAGTTATTTGGGATGTAAAAGTTTGAATTTTTGCTCTTTTTTAAAGTAAAACTGGAAGTTTTTCGAACTAGCTGCGAAAATCTAGCTTCGTAACTGTTCAAGCTATGGATCTGGTTTTATGTTTGTTTTAATAAAAGGGGCATTTCTCTTATGGGAATCATATTTTATTTTACTAGTGCTGCAATTTTACTACAAAATTTTGAACTTTTTTCTTTGAAGCTTTGGATTGTTATTGATGTAATTGCTTTCTGTTTGTTTTGTTTGTATGCCGTGTTGAGTTTTGGAAATGGGTGTCTGGAATGTTGGTTTATCTCTCCTTGTTTTCGTTGTAATGTTAGATGTATTGTTAGTAGTGATGAAATGTAGGTTCTGAGCAGTAGGTTCAAAATTATGCTTGTTTGAGAATGTTTTTGGGGCTTGGTATAGAGGAAATAAGTGTATTACTTCTTATTCAATGCGTTTTTTGGGTAGAATTCAGGAGTATAGAGGCGTTTGTGGACGTTTGGCCATGTTTCATTGCAAAATTTGAAAAAAAATTAGTTTTTGTTTTCAAAAGTGAAATATGATATTTAAAATTGGAAACTGGAAGTTCAACTTTGGACAAAGTGAAAAATTTTCATGGCCAAACGCCTTAGGTAACCGTTATGTGTCATATCTGAACCAGCGCTTAATGGAACTAAATTTTGGTAATGAAGTGTTCTTGATATGTTGTTTTGTTATGTAACAGGATTGGCAGGGGAGTTCTTTTTTCTGTGGGTTGACCTGCTTTTCTTTCTGTTGAAACAAAAACACTGGTGTAATGACTTGTTTTGGTCTCTGCTTAGGAGGGAAGGCATCTCCCCGTCACAACCATGTAGTAGAAATTGATGAAGGTTAAAATTTTCAGCGTTTTCTCAACTTTTACTTCTCTTTATGTAAATTGTTGCCAGCTTCTATGATAATATAGCATACTTGAGCATGTTGTCACAATTAGGATTCTTTGTTCTTCTTAAGCATGGACAGACATTGCCTTTTCCATACATGATTTCTCCATAGCGATCCAAGTTGTTGTGGTCTAGTGGTGTGGAGGAGAACCACAAGGTCTCATGTTTAAATTCCAATTGAGGCCAAAAATCACTAGGTGCCACCATCTTCTTATCTGCCTCGTTGGTGGGCAGAGTCATCTGGTACCTGTGTTGGTGGGAGGTAGCAGGTACTCGGTGGAATAATCGAGGTGCAGAGTACCACCTTCATATAAATGATTTAAGTTGTTGCAATTAATCAAGACATGTTAAGGTTTGTCACTATATTTAGAATTGTTGCAGAAATTTCAACCATTGAGAATGCAAGGGTGTACAGCTACCGGGAATTGCGTGCTGCAACCGAAGATTTTTGCCCTGTAAACAAAATAGGGAAAGGAGGGTTTGGTTCTGTCTACAAGGTATTTTATTCTCCACAAAAAGAGTTTTTTGATTTTGCATTTCCATTCAATAAATAAGCTGACTTTATATTCTGTTGTTAGGGGAGGCTAAGAGATGGAAAAATGGCTGCTATTAAGGTACTTTCTGTTGAATCAAAACAAGGTGTAAAGGAGTTTTTGACAGAAATAAAGGTGATCTCAAATATAGAACATGAAAACCTGGTGAAGTTGTATGGTTGTTGTGCGGAAGGGGATCATAGAATATTGGTGTATAACTACCTGGAAAATAATAGTCTTTCCCAAACTCTGCTTGGTGAGTTTAAGTCTGTTGTCATTGTTTTTTTTTTAACTATTCTTTGATTTGTACTTGTGGCAGTGGATGCTGATGTTTGTTTACTCACAGGTGGTGCACATAGTAGCCTCCAGTTTAGCTGGATAACACGAACTAAGATATGCATTGGTGTTGCACGAGGACTTGCATTCCTCCACGAAGAAGTCCAGCCTTATATAGTTCATAGAGACATTAAAGCAAGTAACATACTTCTCGACAAAGACCTTACCCCAAAAATTTCAGATTTTGGTCTTGCTAAGCTTATTCCAGCTGATTTGACCCATGTTAGCACCCGTGTGGCAGGAACACTGTAAGTTTACATATTCTTATGCTTTTCTTTTATCTTCTTAGATAAATTTCTCTAGGTGAATTATAGGTTATGAATTAAAATGTGTAAGCCATTCAGAAACAATTGGGAATGTTTTGGCTAAGAATATCCAAAGAACAAGATGATGACTCATTGGCATTATCTTGTTCCTATTTATAGAGCTCCCATTTTTCCTGATCTAGCAATGTTGTAAAAGAAAATGTAGAAAAGCTATTGATAGTCTTATGCTACGTTCAGCTAAAACTGGAAATAGTATATCATTATCTACTTGTTTTTTATTGTGTATAAATTCTAACGTGCTTATTTATTGTAGAGGTTATTTGGCCCCTGAATATGCAATGAGAGGGCAGTTGACACGGAAAGCAGATGTATACAGTTTTGGGATT</genome_strand>
        <mrna_strand>TCATCTCTCCCAAAGTCATCTCTTCCATTTTCTTCTGCTGCCTGCTTCAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCAGGGGAGTTCTTTTTTCTGTGGGTTGACCTGCTTTTCTTTCTGTTGAAACAAAAACACTGGTGTAATGACTTGTTTTGGTCTCTGCTTAGGAGGGAAGGCATCTCCCCGTCACAACCATGTAGTAGAAATTGATGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCAACCATTGAGAATGCAAGGGTGTACAGCTACCGGGAATTGCGTGCTGCAACCGAAGATTTTTGCCCTGTAAACAAAATAGGGAAAGGAGGGTTTGGTTCTGTCTACAAG.................................................................................GGGAGGCTAAGAGATGGAAAAATGGCTGCTATTAAGGTACTTTCTGTTGAATCAAAACAAGGTGTAAAGGAGTTTTTGACAGAAATAAAGGTGATCTCAAATATAGAACATGAAAACCTGGTGAAGTTGTATGGTTGTTGTGCGGAAGGGGATCATAGAATATTGGTGTATAACTACCTGGAAAATAATAGTCTTTCCCAAACTCTGCTTG..........................................................................................GTGGTGCACATAGTAGCCTCCAGTTTAGCTGGATAACACGAACTAAGATATGCATTGGTGTTGCACGAGGACTTGCATTCCTCCACGAAGAAGTCCAGCCTTATATAGTTCATAGAGACATTAAAGCAAGTAACATACTTCTCGACAAAGACCTTACCCCAAAAATTTCAGATTTTGGTCTTGCTAAGCTTATTCCAGCTGATTTGACCCATGTTAGCACCCGTGTGGCAGGAACACT...........................................................................................................................................................................................................................................................................................................................................AGGTTATTTGGCCCCTGAATATGCAATGAGAGGGCAGTTGACACGGAAAGCAGATGTATACAGTTTTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337952" ref_strand="+" ref_description="SGN-U337952        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G16670.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069; similar to receptor-like serine/threonine kinase GI:2465923 from (Arabidopsis thaliana) | chr1:5697332-5699762 FORWARD | Aliases: F19K19.4, F19K19_4 (evalue: 5e-43, score=172) genbank/nr: gi|9989053|gb|AAG10816.1| Unknown protein [Arabidopsis thaliana] (evalue: 3e-41, score=172)">
      <seq>ctgctgcctgcttcacaagattggcaggggagttcttttttctgtgggttgacctgcttttctttctgttgaaacaaaaacactggtgtaatgacttgttttggtctctgcttaggagggaaggcatctccccgtcacaaccatgtagtagaaattgatgaaggttaaaattttcagcgttttctcaacttttacttctctttatgtaaattgttgccagcttctatgataatatagcatacttgagcatgttgtcacaattaggattctttgttcttcttaagcatggacagacattgccttttccatacatgatttctccatagcgatccaagttgttgtggtctagtggtgtggaggagaaccacaaggtctcatgtttaaattccaattgaggccaaaaatcactaggtgccaccatcttcttatctgcctcgttggtgggcagagtcatctggtacctgtgttggtgggaggtagcaggtactcggtggaataatcgaggtgcagagtaccaccttcatataaatgatttaagttgttgcaattaatcaagacatgttaaggtttgtcactatatttagaattgttgcagaaatttcaaccattgagaatgcaagggtgtacagctaccgggaattgcgtgctgcaaccgaagatttttgccctgtaaacaaaatacggaaaggagggtttggttctgtctacaaggggaggctaagagatggaaaaatggctgctattaaggtactttctgttgaatcaaaacaaggtgtaaaggagtttttgacagaaataaaggtgatctcaaatatagaacatgaaaacctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="43795" stop="42292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43489" g_stop="42797" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="711" r_length="693" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42796" i_stop="42716" i_length="81">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42715" g_stop="42592" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="835" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U337952" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43489" e_stop="42797"/>
          <exon e_start="42715" e_stop="42592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGCAGGGGAGTTCTTTTTTCTGTGGGTTGACCTGCTTTTCTTTCTGTTGAAACAAAAACACTGGTGTAATGACTTGTTTTGGTCTCTGCTTAGGAGGGAAGGCATCTCCCCGTCACAACCATGTAGTAGAAATTGATGAAGGTTAAAATTTTCAGCGTTTTCTCAACTTTTACTTCTCTTTATGTAAATTGTTGCCAGCTTCTATGATAATATAGCATACTTGAGCATGTTGTCACAATTAGGATTCTTTGTTCTTCTTAAGCATGGACAGACATTGCCTTTTCCATACATGATTTCTCCATAGCGATCCAAGTTGTTGTGGTCTAGTGGTGTGGAGGAGAACCACAAGGTCTCATGTTTAAATTCCAATTGAGGCCAAAAATCACTAGGTGCCACCATCTTCTTATCTGCCTCGTTGGTGGGCAGAGTCATCTGGTACCTGTGTTGGTGGGAGGTAGCAGGTACTCGGTGGAATAATCGAGGTGCAGAGTACCACCTTCATATAAATGATTTAAGTTGTTGCAATTAATCAAGACATGTTAAGGTTTGTCACTATATTTAGAATTGTTGCAGAAATTTCAACCATTGAGAATGCAAGGGTGTACAGCTACCGGGAATTGCGTGCTGCAACCGAAGATTTTTGCCCTGTAAACAAAATAGGGAAAGGAGGGTTTGGTTCTGTCTACAAGGTATTTTATTCTCCACAAAAAGAGTTTTTTGATTTTGCATTTCCATTCAATAAATAAGCTGACTTTATATTCTGTTGTTAGGGGAGGCTAAGAGATGGAAAAATGGCTGCTATTAAGGTACTTTCTGTTGAATCAAAACAAGGTGTAAAGGAGTTTTTGACAGAAATAAAGGTGATCTCAAATATAGAACATGAAAACCTGGTGA</genome_strand>
        <mrna_strand>GATTGGCAGGGGAGTTCTTTTTTCTGTGGGTTGACCTGCTTTTCTTTCTGTTGAAACAAAAACACTGGTGTAATGACTTGTTTTGGTCTCTGCTTAGGAGGGAAGGCATCTCCCCGTCACAACCATGTAGTAGAAATTGATGAAGGTTAAAATTTTCAGCGTTTTCTCAACTTTTACTTCTCTTTATGTAAATTGTTGCCAGCTTCTATGATAATATAGCATACTTGAGCATGTTGTCACAATTAGGATTCTTTGTTCTTCTTAAGCATGGACAGACATTGCCTTTTCCATACATGATTTCTCCATAGCGATCCAAGTTGTTGTGGTCTAGTGGTGTGGAGGAGAACCACAAGGTCTCATGTTTAAATTCCAATTGAGGCCAAAAATCACTAGGTGCCACCATCTTCTTATCTGCCTCGTTGGTGGGCAGAGTCATCTGGTACCTGTGTTGGTGGGAGGTAGCAGGTACTCGGTGGAATAATCGAGGTGCAGAGTACCACCTTCATATAAATGATTTAAGTTGTTGCAATTAATCAAGACATGTTAAGGTTTGTCACTATATTTAGAATTGTTGCAGAAATTTCAACCATTGAGAATGCAAGGGTGTACAGCTACCGGGAATTGCGTGCTGCAACCGAAGATTTTTGCCCTGTAAACAAAATACGGAAAGGAGGGTTTGGTTCTGTCTACAAG.................................................................................GGGAGGCTAAGAGATGGAAAAATGGCTGCTATTAAGGTACTTTCTGTTGAATCAAAACAAGGTGTAAAGGAGTTTTTGACAGAAATAAAGGTGATCTCAAATATAGAACATGAAAACCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320886" ref_strand="+" ref_description="SGN-U320886        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | DJ-1 family protein, similar to DJ-1 protein (Homo sapiens) GI:1780755; similar to DJ-1 beta (GI:18642508) (Drosophila melanogaster); contains Pfam profile: PF01965 ThiJ/PfpI family; TIGRFAM TIGR01383: DJ-1 family protein | chr1:19867968-19871057 REVERSE | Aliases: F12M16.18, F12M16_18(evalue: 2e-145, score=512) genbank/nr: gi|53791962|dbj|BAD54224.1| putative 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme [Oryza sativa (japonica cultivar-group)] (evalue: 1e-143, score=513)">
      <seq>tttattagccattgctatccttctttttagctcaaacttattataaaaatggcagcaccaattttgcgacacctcactactcctttccctgcctttgtaaaactcaacgaaacccccaaaattcaatcatttttcactctctccactcatcccaactctagaaaattctctcgaggaacttcaatttcagtttcagccatggcttccgctactaagaaggtattggttccgattgcgaatggaacagagccgattgaggctatagtgccgatagatatactgcggagagctggtgcggaggttattgttgcttccgttgggaatcagcttcagattgaagtgatgtatggaattaagatcgttgctgatgttctaattacggattgtgtagatactgagtttgaccttatttcgcttccgggaggggtaccaggtgcagccaaccttgggaactgcaaaattttggaaagtattgtaaaaaagcaagctgaaaatggaaagctatatgctgcaatatgtgctgctcctgcgatagcacttggatcatgggggcttttgaaggggctgaaagcaacgtgttatccatcgtatatggaggaactgtcatctcatgccattgctgttgagtcaagagtccaaaaggatgcaaaagttgtgacaagtcgtggaccggcaacatccatcgagtatgctgttgcgttggttgaggagttgtatggaaaagagaaggctaatgaagtttctggcccactggtgatgcgcccaaatcacagtgaagaatttgcatttgcggagcttaattcagtaaattggaccctcacgagtaagccacggattcttgtacctattgcaaatggttctgaggaaatggaagctactattattattgatgtacttcggcgagcaaacgctcaagtagttgtggcatctatggaagataaattggagattgttgcttccagaaaagttaaactagttgcagatgtgctccttgatgaagctgctaaacagtcttacgatctcattgtcctaccaggcggtcttggtggtgccgaaacatttgccaaatcagaaaagttggttgacatgctgaagaagcagagggaatcaagcaaaccatatggagcaatgtgtgcatctccagctctagtcctagagccccatgggcttctccagggtaaaaaggctactgcctttccagccttgtgcaacaaactttccgatccaagtgaagcagaaaacagggtggtggtagatggaaatctcgttaccagcagaggaccaggaactaccatggagttcgcactggccattgcagataagtttattgggcacaaggaaacattagagctagcaaaggagatgattttctaagtatttaacttttttgccgctatgatccgtctttagcatcatatacactttgctatatgatggtgtaaacttgtagtataataaactttgctatatcactctgcacttacagctttgtttcggtggttgttagttatcatgttgtattgtggtggtagtttaaatacaaattatcttcaggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="-" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="55129" stop="49891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54829" g_stop="54611" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54610" i_stop="54521" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54520" g_stop="54320" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="420" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54319" i_stop="53561" i_length="759">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53560" g_stop="53411" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="570" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53410" i_stop="53309" i_length="102">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53308" g_stop="53126" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="753" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53125" i_stop="51891" i_length="1235">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51890" g_stop="51810" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="834" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51809" i_stop="51312" i_length="498">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51311" g_stop="51111" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="1035" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51110" i_stop="51035" i_length="76">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51034" g_stop="50894" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1176" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50893" i_stop="50583" i_length="311">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50582" g_stop="50191" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1177" r_stop="1568" r_length="392" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="-" ref_id="SGN-U320886" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1568</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54829" e_stop="54611"/>
          <exon e_start="54520" e_stop="54320"/>
          <exon e_start="53560" e_stop="53411"/>
          <exon e_start="53308" e_stop="53126"/>
          <exon e_start="51890" e_stop="51810"/>
          <exon e_start="51311" e_stop="51111"/>
          <exon e_start="51034" e_stop="50894"/>
          <exon e_start="50582" e_stop="50191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTAGCCATTTCTATCCTTCTTTTTAGCTCAAACTTATTATAAAAATGGCAGCACCAATTTTGCGACACCTCACTACTCCTTTCCCTGCCTTTGTAAAACTCAACGAAACCCCCAAAATTCAATCATTTTTCACTCTCTCCACTCATCCCAACTCTAGAAAATTCTCTCGAGGAACTTCAATTTCAGTTTCAGCCATGGCTTCCGCTACTAAGAAGGTTCGTATTATCTATACTTTTTCTCTATTGTAGACGGATTCAGAATTTGATCATTAACTGTAGATTTGTATACATTTGTTTGTTATATAGGTATTGGTTCCGATTGCGAATGGAACAGAGCCGATTGAGGCTATAGTGCCGATAGATATACTGCGGAGAGCTGGTGCGGAGGTTATTGTTGCTTCCGTTGGGAATCAGCTTCAGATTGAAGTGATGTATGGAATTAAGATCGTTGCTGATGTTCTAATTACGGATTGTGTAGATACTGAGTTTGACCTTATTTCGCTTCCGGTATGTTTATTGTTATTAGGCTTTGCTGAATTGAACATTGAGGTTAATCTGTTCTAAATTATTTGCTTAGTTCCTGGTGTAGAGTTTGGAATAGCTAAAACATGCATAATTTGAGGTCTATCCTTTCAGTTTTATGTGGCATTAGTTTGAGCCTGCTCGTATTACTTGTCTGTTGATTTATTTACCTGATATTTTGGTGGAAGACTTGAAGTACGGATTCTGGATAAACTACTCATGAATTATAAAAGTGTATGTTCATTATTATATGATTTAGTTTTTGTAAGATTATTACGATCAGTCGTGTAAGAGTGCAGATGCTATGATGATTATTTAATCATGTCCATAGTTGTGTGTGTGTCCGATGAAAAATGTTAATGCAATTAAAGAGTTGACAGTTTTGCATTACTTTATCTTTGTTACTTTCGATGAGGTCAAAAGAGACATTCTAAAAGAAGCAAAGTGCTTAAGGCTGGGGGGCATAAGAGGCTAAAGAGGATGTCTACGCAATTCTTGTCGATATTCCAGACCTTTGTAATGGAAAAGCAAGTAAATCCTTTACAGTTTTATTGTTTAGTAAATGGAAATGATGAATATTGCAAGAAGGATCTCGTCTTACATGTCCTGTTCCTTTTCCTGTGCCAACACGATGAATGATACTTAAATGTTTCTCGATACTGGTCAAGTCTCATTCAGGGACACATGACGATAGCTTCTGTAGTTATGATTCTTTTTTTGGATAATGTTTTCACCATTCTTCAGGGAGGGGTACCAGGTGCAGCCAACCTTGGGAACTGCAAAATTTTGGAAAGTATTGTAAAAAAGCAAGCTGAAAATGGAAAGCTATATGCTGCAATATGTGCTGCTCCTGCGATAGCACTTGGATCATGGGGGCTTTTGAAGGGGCTGAAAGTGAGCTCATTCATTTCTTTCCCTGCTTAAAATTCAAGTATGTTCTTTTTCTTTTGAAGGGACTGAAAGTTAGAATTGTGTTTTTCGATTGTTCTTTGATAGGCAACGTGTTATCCATCGTATATGGAGGAACTGTCATCTCATGCCATTGCTGTTGAGTCAAGAGTCCAAAAGGATGCAAAAGTTGTGACAAGTCGTGGACCGGCAACATCCATCGAGTATGCTGTTGCGTTGGTTGAGGAGTTGTATGGAAAAGAGAAGGCTAATGAAGTTTCTGGCCCACTGGTATATTTCCAATATCATCTCTTCGTTTTATCATAAAAGTGGAAGCTATGTATCGGCATGATGTGGGACTTGGTGTTGTAGACCTAAAATTTGGGATATTTAAGACTTGAATTTGCATCTGTGTCTTATGTTAACATATATGGGCTGAAACAAGAAAGTATATTCCTGTCTCTTCTATGTATGATTCTATTTTTGGAGGAGATAAACTAACTGAAATGTTAAAATGTATCCTACTATGCTGCAAAAGAAAAGAATGTTGTTTCTTTTCTATGTCATAGTTATGTGAACAAGTAGCTGGAGGAACTGCGTATGTTCAACTGGTGCATAATTGGCCGAAGTTTGGGGTAGCAAAATCGCTATCTCTTCTTCTTAGAATCTGATCTTTTGGAGGAGAGTCGAGTGGTTATGACAAATAGTGTTGAAACTCAGAGCCCGGTCTCACCTTTGTTGACTTCTATTCAAGATCAAAATACAGAATGCAACATTGTGGCCTCGTAGCTTTTCTCATCATACATCAAGTTGGTGCACTGAATTATCTTGTCCTGATGATTATTTTTATGTGTACAGTTGTGGAAATCAGTTCTTAGCTAGTTCTTCTTCTGGTATTGAATCTTATTTGTTCATAGTCCATATTCTGTCAAAGCTTTTTCTTAATCATTTTAACTTGGGTATCGGAGACCTGCAGATGTTTTCATTTTGCAGTTCTGGTGGTCTGGTATTTGCTCGGTGCCGTTTTTTTTTAAGCAAATCGGCTAGGCAATGTGCCTAGGGCTAGTTTTATTAATAAAGAGAAAAAAGATCTCAAAGAGAAATGTACAAGCAAGGGGGGCTAGACCTTACCTTACTAATCTTAGTAACGAACCTCTATTAATTAACAAGCATGAAAAAAAAAGAGCTAGAGAAAACTAGATATTCTATGATCATCATAGAGTTTATAATACACTCGGTGATGATACTATAAATGAGGATGCTTAAATAATGCAAAAATACTAAATCTAAGAATAAAGCTGAGTTGTCAAACTCAAACTTCATTTTATACATGTAACAATTAAAAGAGATGGGTTTCCCGTGTAATGTAACCTGAAATATTTCCTTCTTGTCTTCTTCGTCAAATATGTCCAACAAAACATGATAGTTCATCACTTCTTTTCGGATTTACTGGATGTGTTGTTGAAATTGTCATATGATTTTGCTTTGCCATTTATTTCTGAAATTTTGGGATTATTCTTATTCAGGTGATGCGCCCAAATCACAGTGAAGAATTTGCATTTGCGGAGCTTAATTCAGTAAATTGGACCCTCACGAGTAAGCCACGGGTAAGATTGTGGCTGAGGGTTGCAGCTCTGTCAGTTTCTCTACGCAACCATTTATGTACTCAATATGTTAATCATTTCTCTGCAAGTGATCCACGTGGATTTTGCATATATTAAGATCTTCTACTCTCATGTGTATGTTGATACATTTTTTTAAGTATGTGTATGTTGATACATACATTGTTGAGCTGTAAAATGTTGTAGGAGAACTTCGTGAGTCATAAAAGCAAAAGATGAGGTATTCTATGCACATCCATGTATAACCACGTCCCCAGAGTAGTTAGCAAACTTTTGTGCAAACCATCATTGTTTACCTTTGGAAGTAATAGCAGTGTCCATGTCTAGGCAGAATGTTTAGCTTATGAAGTAACAGCAATATATTGTACTTATAGTATGTTATGAAATGTTCTTTCGAGTTTTGGAGCTGAATCACCACCATGTTAATATGCCAGTTCATAACTTGTCAAAAAGATATTAAGTTCTTAATATTTTGTTTGACAGATTCTTGTACCTATTGCAAATGGTTCTGAGGAAATGGAAGCTACTATTATTATTGATGTACTTCGGCGAGCAAACGCTCAAGTAGTTGTGGCATCTATGGAAGATAAATTGGAGATTGTTGCTTCCAGAAAAGTTAAACTAGTTGCAGATGTGCTCCTTGATGAAGCTGCTAAACAGTCTTACGATCTCATTGTCCTACCAGTGAGTGCAATCCTCTGAAAATCTGCTTCTAAAGCTTCTTGAAGTTCTTGTCTTACTGTAATATATGAATATGCAGGGCGGTCTTGGTGGTGCCGAAACATTTGCCAAATCAGAAAAGTTGGTTGACATGCTGAAGAAGCAGAGGGAATCAAGCAAACCATATGGAGCAATGTGTGCATCTCCAGCTCTAGTCCTAGAGCCCCATGGGCTTCTCCAGGTAAGAGACATACTCATGCTCTTCGATTTTGAAAGTAAAACTATTTTAAAGCAAGTGAATATTACCTCAAGTACTGTAATTTGTACATTACCTTGGTTTATCAGGATAAAAAAAGCCACGACTTAAAGGTCTTGATTGGCCTTAACCTTGATGAGCTAGGCTATATTGGTTCATCTAAATAGGTTCAAAAAAGCAACAGTATTATATTATTAAATATACAAGGGGCCTGTTGTTCCAAGTCTTGCAGCATAGCATGCTTTGCATTACACTATTTATGCATTTGACTGCTTTATTTCTGGTCTTCTATCCAGGGTAAAAAGGCTACTGCCTTTCCAGCCTTGTGCAACAAACTTTCCGATCCAAGTGAAGCAGAAAACAGGGTGGTGGTAGATGGAAATCTCGTTACCAGCAGAGGACCAGGAACTACCATGGAGTTCGCACTGGCCATTGCAGATAAGTTTATTGGGCACAAGGAAACATTAGAGCTAGCAAAGGAGATGATTTTCTAAGTATTTAACTTTTTTGCCGCTATGATCCGTCTTTAGCATCATATACACTTTGCTATATGATGGTGTAAACTTGTAGTATAATAAACTTTGCTATATCACTCTGCACTTACAGCTTTGTTTCGGTGGTTGTTAGTTATCATGTTGTATTGTGGTGGTAGTTTAAATACAAATTATCTTCAGGTAATGACAAAAAA</genome_strand>
        <mrna_strand>TTTATTAGCCATTGCTATCCTTCTTTTTAGCTCAAACTTATTATAAAAATGGCAGCACCAATTTTGCGACACCTCACTACTCCTTTCCCTGCCTTTGTAAAACTCAACGAAACCCCCAAAATTCAATCATTTTTCACTCTCTCCACTCATCCCAACTCTAGAAAATTCTCTCGAGGAACTTCAATTTCAGTTTCAGCCATGGCTTCCGCTACTAAGAAG..........................................................................................GTATTGGTTCCGATTGCGAATGGAACAGAGCCGATTGAGGCTATAGTGCCGATAGATATACTGCGGAGAGCTGGTGCGGAGGTTATTGTTGCTTCCGTTGGGAATCAGCTTCAGATTGAAGTGATGTATGGAATTAAGATCGTTGCTGATGTTCTAATTACGGATTGTGTAGATACTGAGTTTGACCTTATTTCGCTTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGGTACCAGGTGCAGCCAACCTTGGGAACTGCAAAATTTTGGAAAGTATTGTAAAAAAGCAAGCTGAAAATGGAAAGCTATATGCTGCAATATGTGCTGCTCCTGCGATAGCACTTGGATCATGGGGGCTTTTGAAGGGGCTGAAA......................................................................................................GCAACGTGTTATCCATCGTATATGGAGGAACTGTCATCTCATGCCATTGCTGTTGAGTCAAGAGTCCAAAAGGATGCAAAAGTTGTGACAAGTCGTGGACCGGCAACATCCATCGAGTATGCTGTTGCGTTGGTTGAGGAGTTGTATGGAAAAGAGAAGGCTAATGAAGTTTCTGGCCCACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGCCCAAATCACAGTGAAGAATTTGCATTTGCGGAGCTTAATTCAGTAAATTGGACCCTCACGAGTAAGCCACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGTACCTATTGCAAATGGTTCTGAGGAAATGGAAGCTACTATTATTATTGATGTACTTCGGCGAGCAAACGCTCAAGTAGTTGTGGCATCTATGGAAGATAAATTGGAGATTGTTGCTTCCAGAAAAGTTAAACTAGTTGCAGATGTGCTCCTTGATGAAGCTGCTAAACAGTCTTACGATCTCATTGTCCTACCA............................................................................GGCGGTCTTGGTGGTGCCGAAACATTTGCCAAATCAGAAAAGTTGGTTGACATGCTGAAGAAGCAGAGGGAATCAAGCAAACCATATGGAGCAATGTGTGCATCTCCAGCTCTAGTCCTAGAGCCCCATGGGCTTCTCCAG.......................................................................................................................................................................................................................................................................................................................GGTAAAAAGGCTACTGCCTTTCCAGCCTTGTGCAACAAACTTTCCGATCCAAGTGAAGCAGAAAACAGGGTGGTGGTAGATGGAAATCTCGTTACCAGCAGAGGACCAGGAACTACCATGGAGTTCGCACTGGCCATTGCAGATAAGTTTATTGGGCACAAGGAAACATTAGAGCTAGCAAAGGAGATGATTTTCTAAGTATTTAACTTTTTTGCCGCTATGATCCGTCTTTAGCATCATATACACTTTGCTATATGATGGTGTAAACTTGTAGTATAATAAACTTTGCTATATCACTCTGCACTTACAGCTTTGTTTCGGTGGTTGTTAGTTATCATGTTGTATTGTGGTGGTAGTTTAAATACAAATTATCTTCAGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332762" ref_strand="+" ref_description="SGN-U332762        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger transcription factor, putative, contains Pfam profile: PF00628 PHD-finger | chr3:5039938-5044818 REVERSE | Aliases: K15M2.12(evalue: 5e-71, score=264) genbank/nr: gi|15232453|ref|NP_188116.1| PHD finger transcription factor, putative [Arabidopsis thaliana](evalue: 3e-69, score=264)">
      <seq>gagtggagttcatgaagtaattacaagcaaacaaaactctgggccaaagaaacgtaagaaatgccgtcttagtgacgatgatctcttaatttcagccgtatttagaaacacgacatgcaaatctggcaacaaaaggtcctctggtaaaatcaaacctctaaggaaaaggaagaaccagaaaagtggtggtaagttgcttttacgtagtcttattaagggtggaaaacacttccccgaagaaaaatggcctacctttgcctcaaggactgtgttatcctggttaattcattctggggttgtctccctaaatgaaatgatccagtaccagaacttgaaggatgattctgtggtaaaaaccggctatattaccgctgatggaatatcgtgtaattgctgtgacgaggtcctatccatctctagcttcaaaaagcatgccggttttaagcacaatcgcccctgtttgaatcttttcatggagaatggtaagccattcaccttatgtcagcttgaggcttggtcagatgaatacaaggcacggagggcagtttctcaaacttcccaagctgaggaaagggaccaaaatgatgacagttgcgggcgatgtggtgatggaggcgaactgatttgctgtgacaattgtccagctacatttcatctagcttgtttgttcacacaggagcttcctgaagggagttggtactgttcacaatgcacgtgccataaatgtggggacgtggttagatgtattgaatcaagttctcctggtggatataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="+" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="64666" stop="66896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64966" g_stop="65641" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65642" i_stop="66497" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66498" g_stop="66596" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="775" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="+" ref_id="SGN-U332762" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64966" e_stop="65641"/>
          <exon e_start="66498" e_stop="66596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGGAGTTCATGAAGTAATTACAAGCAAACAAAACTCTGGGCCAAAGAAACGTAAGAAATGCCGTCTTAGTGACGATGATCTCTTAATTTCAGCCGTATTTAGAAACACGACATGCAAATCTGGCAACAAAAGGTCCTCTGGTAAAATCAAACCTCTAAGGAAAAGGAAGAACCAGAAAAGTGGTGGTAAGTTGCTTTTACGTAGTCTTATTAAGGGTGGAAAACACTTCCCCGAAGAAAAATGGCCTACCTTTGCCTCAAGGACTGTGTTATCCTGGTTAATTCATTCTGGGGTTGTCTCCCTAAATGAAATGATCCAGTACCAGAACTTGAAGGATGATTCTGTGGTAAAAACCGGCTATATTACCGCTGATGGAATATCGTGTAATTGCTGTGACGAGGTCCTATCCATCTCTAGCTTCAAAAAGCATGCCGGTTTTAAGCACAATCGCCCCTGTTTGAATCTTTTCATGGAGAATGGTAAGCCATTCACCTTATGTCAGCTTGAGGCTTGGTCAGATGAATACAAGGCACGGAGGGCAGTTTCTCAAACTTCCCAAGCTGAGGAAAGGGACCAAAATGATGACAGTTGCGGGCGATGTGGTGATGGAGGCGAACTGATTTGCTGTGACAATTGTCCAGCTACATTTCATCTAGCTTGTTTGTTCACACAGGTTCGTCTTTTGACTCTTTTCACTTAGTTTACTTGTTCGAGTCAGTTTGATGCCTTTATCTTGCCTTGAATAAATAATTTTCTTGCTCAACATTTATGTTTAATCCACTTGTAAATTGTAAGATGTCAAAAGATCCGTCCTAGCGCTTTATGCATGGGTTCTTATATGATTTTATATGACGTTATATAAACAGAACACCAAAGAAGTTGCATGTCTTGTTCAGTCCTTACTCTCAATTATTTCCCTTTCAGGACTCGTCTTTCCACCAAAACAGTCCAAGGGATTGCTGTGCATGGATTTCTTGCTTTAATGACATTTTTGTCTTAGTACTTTAATCTGCATATTACTTGACATGACTTCTTATTTCTATTCTATTCCCCATAAAATAATAGAAAGGTTTCACATAATTAAATACGGGTATTTGTCGAATATCGCTAACCAAATGCTGCATAACATTATGTGAAATGGAACATATTTGCACTCTACTTAGTTGGGGTCAAATATGTCCTTGTCTTCACTTAAATGGACTATATTACCCTCATTTTCTTCGTAATCACTTGCTTTACTTTGTTTTTATTGCCTTTTTACCATTTTCGCAAGTCGTACCATGGTTTCTCTACAAACCTGTACTCTATTTGTTTGCCAATATTGTTCATTCTCAAAAAACTAAATTATTTACCAATATTGTTTTGGTTTTGTCTCTGCACTAGGCATGATTGTATGATTATTCTAAAATATGTCTTGGTTTCCCTTTGATTTTGTTGCGTATCATATGAAGTTGAGTACTGAATTTGTTTAATGACACTGGACAAGAGATATAAATTCTAGTAGATTAACTTATTATTTCTTGTTTCAGGAGCTTCCTGAAGGGAGTTGGTACTGTTCACAATGCACGTGCCAGAAATGTGGGGACGTGGTTAGATGTAGTGAATCAAGTTCTCCTGGTGGATATAAA</genome_strand>
        <mrna_strand>GAGTGGAGTTCATGAAGTAATTACAAGCAAACAAAACTCTGGGCCAAAGAAACGTAAGAAATGCCGTCTTAGTGACGATGATCTCTTAATTTCAGCCGTATTTAGAAACACGACATGCAAATCTGGCAACAAAAGGTCCTCTGGTAAAATCAAACCTCTAAGGAAAAGGAAGAACCAGAAAAGTGGTGGTAAGTTGCTTTTACGTAGTCTTATTAAGGGTGGAAAACACTTCCCCGAAGAAAAATGGCCTACCTTTGCCTCAAGGACTGTGTTATCCTGGTTAATTCATTCTGGGGTTGTCTCCCTAAATGAAATGATCCAGTACCAGAACTTGAAGGATGATTCTGTGGTAAAAACCGGCTATATTACCGCTGATGGAATATCGTGTAATTGCTGTGACGAGGTCCTATCCATCTCTAGCTTCAAAAAGCATGCCGGTTTTAAGCACAATCGCCCCTGTTTGAATCTTTTCATGGAGAATGGTAAGCCATTCACCTTATGTCAGCTTGAGGCTTGGTCAGATGAATACAAGGCACGGAGGGCAGTTTCTCAAACTTCCCAAGCTGAGGAAAGGGACCAAAATGATGACAGTTGCGGGCGATGTGGTGATGGAGGCGAACTGATTTGCTGTGACAATTGTCCAGCTACATTTCATCTAGCTTGTTTGTTCACACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTCCTGAAGGGAGTTGGTACTGTTCACAATGCACGTGCCATAAATGTGGGGACGTGGTTAGATGTATTGAATCAAGTTCTCCTGGTGGATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330165" ref_strand="+" ref_description="SGN-U330165        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | thioredoxin family protein, contains Pfam profiles PF00085: Thioredoxin, PF00515: TPR Domain; similar to tetratricopeptide repeat protein 2 (GI:7248701) (Drosophila melanogaster); similar to DnaJ homolog subfamily C member 7 (Tetratricopeptide repeat protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615) (Homo sapiens) | chr1:19883090-19886043 FORWARD | Aliases: F12M16.20, F12M16_20(evalue: 2e-25, score=110) genbank/nr: gi|15219271|ref|NP_175737.1| thioredoxin family [Arabidopsis thaliana] gi|7769858|gb|AAF69536.1| F12M16.20 [Arabidopsis thaliana] gi|30102668|gb|AAP21252.1| At1g53300 [Arabidopsis thaliana](evalue: 1e-23, score=110)">
      <seq>tgaaaaccggcatggctagtaagtcatcgaagactgacgttttaggttctggaacgggttattacggtcacggaagtataatgcgtggaggtaccggtgtaaaacctggtggcggtgctgtcggtggggttgacaacggtgctacacagacggcgaatttgagaggggtaatggctggagacacaatgaaaagagggatgttgaatactgatccagaggagttgaagagattaggaaatgagaattacaaaaagggttatttcgttgaagctttaaatctgtatgataaagctatagctatttctccaggcaatgctgcttaccattgtaaccgggcggctgcgctgatcggtctgaagcggttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="+" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="70642" stop="71607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70942" g_stop="71307" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="+" ref_id="SGN-U330165" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70942" e_stop="71307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACCGGCATGGCTAGTAAGTCATCGAAGACTGACGTTTTAGGTTCTGGAACGGGTTATTACGGTCACGGAAGTATAATGCGTGGAGGTACCGGTGTAAAACCTGGTGGCGGTGCTGTCGGTGGGGTTGACGCCGGTGCTACACAGACGGCGAATTTGAGAGGGGTAATGGCTGGAGACACAATGAAAAGAGGAATGTTGAATACTGATCCAGAGGAGTTGAAGAGATTAGGAAATGAGAATTACAAAAAGGGTTATTTCGTTGAAGCTTTAAATCTGTATGATAAAGCTATAGCTATTTCTCCAGGCAATGCTGCTTACCATTGTAACCGGGCGGCTGCGCTGATCGGTCTGAAGCGGTTAC</genome_strand>
        <mrna_strand>TGAAAACCGGCATGGCTAGTAAGTCATCGAAGACTGACGTTTTAGGTTCTGGAACGGGTTATTACGGTCACGGAAGTATAATGCGTGGAGGTACCGGTGTAAAACCTGGTGGCGGTGCTGTCGGTGGGGTTGACAACGGTGCTACACAGACGGCGAATTTGAGAGGGGTAATGGCTGGAGACACAATGAAAAGAGGGATGTTGAATACTGATCCAGAGGAGTTGAAGAGATTAGGAAATGAGAATTACAAAAAGGGTTATTTCGTTGAAGCTTTAAATCTGTATGATAAAGCTATAGCTATTTCTCCAGGCAATGCTGCTTACCATTGTAACCGGGCGGCTGCGCTGATCGGTCTGAAGCGGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rqpOrr/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327211" ref_strand="+" ref_description="SGN-U327211        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | thioredoxin family protein, contains Pfam profiles PF00085: Thioredoxin, PF00515: TPR Domain; similar to tetratricopeptide repeat protein 2 (GI:7248701) (Drosophila melanogaster); similar to DnaJ homolog subfamily C member 7 (Tetratricopeptide repeat protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615) (Homo sapiens) | chr1:19883090-19886043 FORWARD | Aliases: F12M16.20, F12M16_20(evalue: 4e-120, score=350) genbank/nr: gi|15219271|ref|NP_175737.1| thioredoxin family [Arabidopsis thaliana] gi|7769858|gb|AAF69536.1| F12M16.20 [Arabidopsis thaliana] gi|30102668|gb|AAP21252.1| At1g53300 [Arabidopsis thaliana](evalue: 4e-118, score=350)">
      <seq>gcagccattgcttctggagcagatgcgtctcctcagttatttgcttgtagagcagaagctcttttgaagctacatcaagtagaggatgcagagttgagcttatcaattactcggaagcatgaaccatctactggtggatcaccagagtcaaaaatttttgggatgctttcagaggcatatgtgttctttgttcaagctcagattgacctggctatgggaaggtttgaaagtgcaatcagttcagtagagcgagctggacatattgatcctcgaaatattgaagtatcagtttttctcaacaatacaaggtcggtgggacgggctcgtacccgtggcaatgatctatttaaatccgaaaggtatactgaagcatgtgctgcttatggggaaggtctcaggcgtgattcgtcaaattcagttctctattgtaatagagcagcttgctggtataaactcgggcagtgggaaaaagctgtggatgactgcaatcgagcgctcactttccagccacactacactaaagcccttcttcgaagggctgcctcaaataccaagcttgagagatgggctgaagctgttagagattatgaggttttgaggaaagcgcttccatatgacaccgaggttgctgaatcgttattccatgctcaagttgcattaaagaaatcacgcggagaagacattcacaatatgaaatttggtggggaggtggaattagtttctggtctcgagcagtttcaagctgcgatttcatcgccttgtgcatctgtggtccatttcaaagcagcatctaacctacaatgcaagcagatatcccctttcttggatacctttaaccaccaagtatccttccataaattttcttaaggttgatgtggaagagagcccgtcaattgctaatgcagagaatgttagaatcgtaccaacattcaagatttacaaaaagggaagccgcgtgaaggagatgatctgcccaagtcaagaggtgttagaatcatcggtgaggcattacagtatttaagtgccatgattgcaatgtcatcgtgcttcttcgtgttctctcatcattccaatcacccggtattcttgccgtttacctatgacaaaattgagctactactactactacataataacaatctcattaaggagccaatgcagccaaatgccagcaaccttcagagggattagtttagtctccttttttcccttttaattttattcattcattgctgtcttggttcctacttcttcccacctccacattaatctttctcttttcatatcacttattcttattatatgaaaaaaaaaaattaaaaaaattaggttacatttccctagtataaaacttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0308M01-H9EHz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0308M01.1" temp_strand="+" temp_description="C07HBa0308M01.1  AC210364.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0308M01 upload_account_name:france">
        <position start="72135" stop="74547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72435" g_stop="72470" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72471" i_stop="72560" i_length="90">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72561" g_stop="72745" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="221" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72746" i_stop="72821" i_length="76">
            <donor d_prob="0.431" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72822" g_stop="73155" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="555" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73156" i_stop="73274" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73275" g_stop="73479" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="760" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73480" i_stop="73566" i_length="87">
            <donor d_prob="0.023" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73567" g_stop="73673" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="868" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73674" i_stop="73758" i_length="85">
            <donor d_prob="0.928" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73759" g_stop="74247" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="1357" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0308M01.1" gen_strand="+" ref_id="SGN-U327211" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1356</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0308M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72435" e_stop="72470"/>
          <exon e_start="72561" e_stop="72745"/>
          <exon e_start="72822" e_stop="73155"/>
          <exon e_start="73275" e_stop="73479"/>
          <exon e_start="73567" e_stop="73673"/>
          <exon e_start="73759" e_stop="74247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCATTGCTTCTGGAGCAGATGCGTCTCCTCAGGTAAAGCAATACTAGTGATCCAAATGTGGAAGAAAATAATGCATGCAAGTTTGAATGCTGGTACTGAATTACTGAAATTGAATTTTACAGTTATTTGCTTGTAGAGCAGAAGCTCTTTTGAAGCTACATCAAGTAGAGGATGCAGAGTTGAGCTTATCAATTACTCGGAAGCATGAACCATCTACTGGTGGATCACCAGAGTCAAAAATTTTTGGGATGCTTTCAGAGGCATATGTGTTCTTTGTTCAAGCTCAGATTGACCTGGCTATGGGAAGGTCAGTATAGAATGATTTGCTAAGTTTTTATAAGGTTGTGGGGGAGTAAGAGAAGTTGGATCATGGATACTTGCAGGTTTGAAAGTGCAATCAGTTCAGTAGAGAGAGCTGGACATATTGATCCTCGAAATATTGAAGTATCAGTTTTTCTCAACAATACAAGGTCGGTGGGACGGGCTCGTACCCGTGGCAATGATCTATTTAAATCCGAAAGGTATACTGAAGCATGTGCTGCTTATGGGGAAGGTCTCAGGCGTGATTCGTCAAATTCAGTTCTCTATTGTAATAGAGCAGCTTGCTGGTATAAACTCGGGCAGTGGGAAAAAGCTGTGGATGACTGCAATCGAGCGCTCACTTTCCAGCCACACTACACTAAAGCCCTTCTTCGAAGGGCTGCCTCAAATACCAAGGTAACATGCCATATAAAAATCTTTTCTAGTCAGTGTGTTCCTAGAAGAATATTAATATATTATCACTTGCTTGTTCCTGTTGTTGAGTAAAATTAATTTTAACTGTTGATCAATTATAGCTTGAGAGATGGGCTGAAGCTGTTAGAGATTATGAGGTTTTGAGGAAAGCGCTTCCATATGACACCGAGGTTGCTGAATCGTTATTCCATGCTCAAGTTGCATTAAAGAAATCACGCGGAGAAGACATTCACAATATGAAATTTGGTGGGGAGGTGGAATTAGTTTCTGGTCTCGAGCAGTTTCAAGCTGCGATTTCATCGCCTTGTATGTTTTCCCCTGCACTTGTAGCTTGACCCTCCTTAAGTCATTTTCTGCCAATTCAGAGATTAATTATTATATTGGACTTTGTAGGTGCATCTGTGGTCCATTTCAAAGCAGCATCTAACCTACAATGCAAGCAGATATCCCCTTTCTTGGATA-CTTTAACCACCAAGTATCCTTCCATAAATTTTCTTAAGGTAATTTCTTTTAGCAATGCCTTGTCTTGCTGCGATTTCTGATTGTTTTATATGCCTTGTATTCATTTCCTCTTCTGTGTTGAAGGTTGATGTGGAAGAGAGCCCGTCAATTGCTAATGCAGAGAATGTTAGAATCGTACCAACATTCAAGATTTACAAAAAGGGAAGCCGCGTGAAGGAGATGATCTGCCCAAGTCAAGAGGTGTTAGAATCATCGGTGAGGCATTACAGTATTTAAGTGCCATGATTGCAATGTCATCGTGCTTCTTCGTGTTCTCTCATCATTCCAATCACCCGGTATTCTTGCCGTTTACCTATGACAAAATTGAGCTACTACTACTACTACATAATAACAATCTCATTAAGGAGCCAATGCAGCCAAATGCCAGCAACCTTCAGAGGGATTAGTTTAGTCTCCTTTTTTCCCTTTTAATTTTATTCATTCATTGCTGTCTTGGTTCCTACTTCTTCCCACCTCCACATTAATCTTTCTCTTTTCATATCACTTATTCTTATTATATGAAAAAAAAAAATTAAAAAAATTAGGTTACATTTCCCTAGTATAAAACTTGAG</genome_strand>
        <mrna_strand>GCAGCCATTGCTTCTGGAGCAGATGCGTCTCCTCAG..........................................................................................TTATTTGCTTGTAGAGCAGAAGCTCTTTTGAAGCTACATCAAGTAGAGGATGCAGAGTTGAGCTTATCAATTACTCGGAAGCATGAACCATCTACTGGTGGATCACCAGAGTCAAAAATTTTTGGGATGCTTTCAGAGGCATATGTGTTCTTTGTTCAAGCTCAGATTGACCTGGCTATGGGAAG............................................................................GTTTGAAAGTGCAATCAGTTCAGTAGAGCGAGCTGGACATATTGATCCTCGAAATATTGAAGTATCAGTTTTTCTCAACAATACAAGGTCGGTGGGACGGGCTCGTACCCGTGGCAATGATCTATTTAAATCCGAAAGGTATACTGAAGCATGTGCTGCTTATGGGGAAGGTCTCAGGCGTGATTCGTCAAATTCAGTTCTCTATTGTAATAGAGCAGCTTGCTGGTATAAACTCGGGCAGTGGGAAAAAGCTGTGGATGACTGCAATCGAGCGCTCACTTTCCAGCCACACTACACTAAAGCCCTTCTTCGAAGGGCTGCCTCAAATACCAAG.......................................................................................................................CTTGAGAGATGGGCTGAAGCTGTTAGAGATTATGAGGTTTTGAGGAAAGCGCTTCCATATGACACCGAGGTTGCTGAATCGTTATTCCATGCTCAAGTTGCATTAAAGAAATCACGCGGAGAAGACATTCACAATATGAAATTTGGTGGGGAGGTGGAATTAGTTTCTGGTCTCGAGCAGTTTCAAGCTGCGATTTCATCGCCTT.......................................................................................GTGCATCTGTGGTCCATTTCAAAGCAGCATCTAACCTACAATGCAAGCAGATATCCCCTTTCTTGGATACCTTTAACCACCAAGTATCCTTCCATAAATTTTCTTAAG.....................................................................................GTTGATGTGGAAGAGAGCCCGTCAATTGCTAATGCAGAGAATGTTAGAATCGTACCAACATTCAAGATTTACAAAAAGGGAAGCCGCGTGAAGGAGATGATCTGCCCAAGTCAAGAGGTGTTAGAATCATCGGTGAGGCATTACAGTATTTAAGTGCCATGATTGCAATGTCATCGTGCTTCTTCGTGTTCTCTCATCATTCCAATCACCCGGTATTCTTGCCGTTTACCTATGACAAAATTGAGCTACTACTACTACTACATAATAACAATCTCATTAAGGAGCCAATGCAGCCAAATGCCAGCAACCTTCAGAGGGATTAGTTTAGTCTCCTTTTTTCCCTTTTAATTTTATTCATTCATTGCTGTCTTGGTTCCTACTTCTTCCCACCTCCACATTAATCTTTCTCTTTTCATATCACTTATTCTTATTATATGAAAAAAAAAAATTAAAAAAATTAGGTTACATTTCCCTAGTATAAAACTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11669" PGL_stop="12130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11669" e_stop="12130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="11669" e_stop="12130" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11669" stop="12130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTTGTTTTTGTCTCTCTCTTCGGAAAAACCCTAGTTCCCTACTTCTTCCATTTTCCCTGAAAATATCGATTTCGATCCAGCTAAGGTTTTCCAGTTTTTCCTTTCAAATTCATGGGGTTTTAGGAGGAAAGTTTCGATTTTTTCTGTTTTTTTACAATCCCAGTTGTTGTGTTTTGTGCTTCGTGTTTCGTTTGTTTTAGGGTTAGGGTTTAGTTTTTTCATCCCTTTTGGTGGTTGTTGGGTTGTGATTACATGTATGGATTCAGATGCAAACGATTTGAATTCAAGAAATAGGTTGCGTTGGGGCGATAATCACAAAGTTTATACCCGGAAGCGCCGTAGAACCCTAGAGAATACTAGTACTGACGTTGCTCCGGCCGCCACAGCCGCTGTTAGCTCAGCCGCAGCTGCACCGGAGGTTATTTCGAATAGCGGGAGGGATACGAACGAGAATGATG</gDNA_template>
            <first_frame> N  F  C  F  C  L  S  L  R  K  N  P  S  S  L  L  L  P  F  S  L  K  I  S  I  S  I  Q  L  R  F  S  S  F  S  F  Q  I  H  G  V  L  G  G  K  F  R  F  F  L  F  F  Y  N  P  S  C  C  V  L  C  F  V  F  R  L  F  *  G  *  G  L  V  F  S  S  L  L  V  V  V  G  L  *  L  H  V  W  I  Q  M  Q  T  I  *  I  Q  E  I  G  C  V  G  A  I  I  T  K  F  I  P  G  S  A  V  E  P  *  R  I  L  V  L  T  L  L  R  P  P  Q  P  L  L  A  Q  P  Q  L  H  R  R  L  F  R  I  A  G  G  I  R  T  R  M  M </first_frame>
            <second_frame>  I  F  V  F  V  S  L  F  G  K  T  L  V  P  Y  F  F  H  F  P  *  K  Y  R  F  R  S  S  *  G  F  P  V  F  P  F  K  F  M  G  F  *  E  E  S  F  D  F  F  C  F  F  T  I  P  V  V  V  F  C  A  S  C  F  V  C  F  R  V  R  V  *  F  F  H  P  F  W  W  L  L  G  C  D  Y  M  Y  G  F  R  C  K  R  F  E  F  K  K  *  V  A  L  G  R  *  S  Q  S  L  Y  P  E  A  P  *  N  P  R  E  Y  *  Y  *  R  C  S  G  R  H  S  R  C  *  L  S  R  S  C  T  G  G  Y  F  E  *  R  E  G  Y  E  R  E  *   </second_frame>
            <third_frame>   F  L  F  L  S  L  S  S  E  K  P  *  F  P  T  S  S  I  F  P  E  N  I  D  F  D  P  A  K  V  F  Q  F  F  L  S  N  S  W  G  F  R  R  K  V  S  I  F  S  V  F  L  Q  S  Q  L  L  C  F  V  L  R  V  S  F  V  L  G  L  G  F  S  F  F  I  P  F  G  G  C  W  V  V  I  T  C  M  D  S  D  A  N  D  L  N  S  R  N  R  L  R  W  G  D  N  H  K  V  Y  T  R  K  R  R  R  T  L  E  N  T  S  T  D  V  A  P  A  A  T  A  A  V  S  S  A  A  A  A  P  E  V  I  S  N  S  G  R  D  T  N  E  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11707" stop="12129"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPTSSIFPENIDFDPAKVFQFFLSNSWGFRRKVSIFSVFLQSQLLCFVLRVSFVLGLGFSFFIPFGGCWVVITCMDSDANDLNSRNRLRWGDNHKVYTRKRRRTLENTSTDVAPAATAAVSSAAAAPEVISNSGRDTNEND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13082" PGL_stop="17716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13082" e_stop="13956"/>
            <exon e_start="14063" e_stop="14108"/>
            <exon e_start="14204" e_stop="14308"/>
            <exon e_start="14429" e_stop="14502"/>
            <exon e_start="17185" e_stop="17716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.662" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13082" e_stop="13956" e_length="875"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13957" i_stop="14062" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14063" e_stop="14108" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.766" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14109" i_stop="14203" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14204" e_stop="14308" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14309" i_stop="14428" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14429" e_stop="14502" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.662" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14503" i_stop="17184" i_length="2682"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="17185" e_stop="17716" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13082" stop="13956"/>
              <exon start="14063" stop="14108"/>
              <exon start="14204" stop="14308"/>
              <exon start="14429" stop="14502"/>
              <exon start="17185" stop="17716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATAAGCACAGACTTCAGGTTTTTAGGAATTGTAGCAGCTTGCTTCAGAGGTTAATGAAACACAAGCATGGTTGGGTGTTTAATGAGCCAGTGAACGTGAAATCTCTTGGGCTACATGATTATCATGACATCATTAAGCATCCTATGGATTTGGGCACCATTAAGACTAGGTTATCTGATGATTGGTACAAGTCTCCAATGGAATTTGCGGAGGATGTACGACTCGTCTTTCGTAATGCCATGACTTATAATCCTAGAGGGCAAGATGTACATGTTATGGCTGAACAGTTATCAGAGATCTTCGAAGAGAGATGGGCAGTTATAGAGGCTGAGTACCATTCAGATTGGAGGTACCAAATGTATCATGATGTTGGTGCTCCCACTCCCACCTCAAGAATGACCTCTTATCCTCCTCCTTTTCTCCACACCCCAGTGTCTTCTCGTTCTCTTGCTCCACATGCCCGTCAACTGCATCCGTTGGATAGATCTGAGTCAATGACTAGGCCGGTTAATCCCAAGATGAAGACTTCAAATATAGCTCATGTTACTAGGACACCAGTTCCTAAGAAACCGAAGGCAAAAGATCTCAATAAGAGAGACATGACGTATGAGGAAAAGCAGAAGCTTAGCACTAATCTTCAGAATTTACCTTCAGAAAAGCTTGATGCAATTGTTCAGATAATTAAGAAGAGGAACACCGCACTTAGTCAAGACAACGATGAGATTGAAGTAGATATAGATAGTGTTGATGCAGAAACACTCTGGGAGCTTGATAGATTTGTAACAAATTTCAAAAAGAGTTTTAGCAAGTATAAGAGAAAAGCTGAACTTCTTCGAGCCAGGGAAGGAGCTGCTCAGGCTGCTCGAAATGTG : AACCCTACATCAATGGTTGCTGATGCACTGAAAGAAAATGGAACTG : GTGAAAAAGATACAGCTCCTGCTACCCTTGAAGGTGGAAGACCGGCGGATAGTGCAAGTAGCAGCTCAAGTAGTTCCAGCAGTGATTCAGGCTCATCCTCTAGTG : ATTCTGATAGTGATAGTTCTTCAGCATCTGGATCAGAGGCGGCGCAATCACCCAGGACATGACAAGCTCTTGAT : GAAATTTGGATTATGAATGCATCAGAGCAGACGGCTGTTCAAACACTCATCTGAAAGACGTCGTGTGGCTCTTGCATGATAAGTTTCTTTCAAGAACTTCAAGTATGGGAGGAAGTGAAGTCCTAGTGAATTTGGGAGCATGTTAGCTGTTGGCGCTCACATTCTTCTCTGTCATATAGCTTGTCATCGACAAGCTATATACAGAGGGAGGTGGTTATGGTGGTAGTACTGTGAGGGTATTTAACACCTGTTTGTTGAATTAAAATATTGTGTGCTGAAAAAATCTATGTTTTCAGTGTCATTGTCAACAATTTGGCAGGATCATGATTCATGCAAGGTCCTGCAGCTGTAACCTGGATGTACAAAGAGCATAATAGGCTGATGATGTGTATTGTTTGTTTGCTTTGGGAGTATTTATTGCATTGTAATATCACCATCAGGGATTTATATGGAAATAACAGTAGGAGGGTGTACATACTTTCTCAATTTCTTGTCTGGCATCATAATATGCGGCAAGTTATTAACTGACGCA</gDNA_template>
            <first_frame> L  I  S  T  D  F  R  F  L  G  I  V  A  A  C  F  R  G  *  *  N  T  S  M  V  G  C  L  M  S  Q  *  T  *  N  L  L  G  Y  M  I  I  M  T  S  L  S  I  L  W  I  W  A  P  L  R  L  G  Y  L  M  I  G  T  S  L  Q  W  N  L  R  R  M  Y  D  S  S  F  V  M  P  *  L  I  I  L  E  G  K  M  Y  M  L  W  L  N  S  Y  Q  R  S  S  K  R  D  G  Q  L  *  R  L  S  T  I  Q  I  G  G  T  K  C  I  M  M  L  V  L  P  L  P  P  Q  E  *  P  L  I  L  L  L  F  S  T  P  Q  C  L  L  V  L  L  L  H  M  P  V  N  C  I  R  W  I  D  L  S  Q  *  L  G  R  L  I  P  R  *  R  L  Q  I  *  L  M  L  L  G  H  Q  F  L  R  N  R  R  Q  K  I  S  I  R  E  T  *  R  M  R  K  S  R  S  L  A  L  I  F  R  I  Y  L  Q  K  S  L  M  Q  L  F  R  *  L  R  R  G  T  P  H  L  V  K  T  T  M  R  L  K  *  I  *  I  V  L  M  Q  K  H  S  G  S  L  I  D  L  *  Q  I  S  K  R  V  L  A  S  I  R  E  K  L  N  F  F  E  P  G  K  E  L  L  R  L  L  E  M  * :   T  L  H  Q  W  L  L  M  H  *  K  K  M  E  L  :  V  K  K  I  Q  L  L  L  P  L  K  V  E  D  R  R  I  V  Q  V  A  A  Q  V  V  P  A  V  I  Q  A  H  P  L  V  :  I  L  I  V  I  V  L  Q  H  L  D  Q  R  R  R  N  H  P  G  H  D  K  L  L  M :   K  F  G  L  *  M  H  Q  S  R  R  L  F  K  H  S  S  E  R  R  R  V  A  L  A  *  *  V  S  F  K  N  F  K  Y  G  R  K  *  S  P  S  E  F  G  S  M  L  A  V  G  A  H  I  L  L  C  H  I  A  C  H  R  Q  A  I  Y  R  G  R  W  L  W  W  *  Y  C  E  G  I  *  H  L  F  V  E  L  K  Y  C  V  L  K  K  S  M  F  S  V  S  L  S  T  I  W  Q  D  H  D  S  C  K  V  L  Q  L  *  P  G  C  T  K  S  I  I  G  *  *  C  V  L  F  V  C  F  G  S  I  Y  C  I  V  I  S  P  S  G  I  Y  M  E  I  T  V  G  G  C  T  Y  F  L  N  F  L  S  G  I  I  I  C  G  K  L  L  T  D  A </first_frame>
            <second_frame>  *  *  A  Q  T  S  G  F  *  E  L  *  Q  L  A  S  E  V  N  E  T  Q  A  W  L  G  V  *  *  A  S  E  R  E  I  S  W  A  T  *  L  S  *  H  H  *  A  S  Y  G  F  G  H  H  *  D  *  V  I  *  *  L  V  Q  V  S  N  G  I  C  G  G  C  T  T  R  L  S  *  C  H  D  L  *  S  *  R  A  R  C  T  C  Y  G  *  T  V  I  R  D  L  R  R  E  M  G  S  Y  R  G  *  V  P  F  R  L  E  V  P  N  V  S  *  C  W  C  S  H  S  H  L  K  N  D  L  L  S  S  S  F  S  P  H  P  S  V  F  S  F  S  C  S  T  C  P  S  T  A  S  V  G  *  I  *  V  N  D  *  A  G  *  S  Q  D  E  D  F  K  Y  S  S  C  Y  *  D  T  S  S  *  E  T  E  G  K  R  S  Q  *  E  R  H  D  V  *  G  K  A  E  A  *  H  *  S  S  E  F  T  F  R  K  A  *  C  N  C  S  D  N  *  E  E  E  H  R  T  *  S  R  Q  R  *  D  *  S  R  Y  R  *  C  *  C  R  N  T  L  G  A  *  *  I  C  N  K  F  Q  K  E  F  *  Q  V  *  E  K  S  *  T  S  S  S  Q  G  R  S  C  S  G  C  S  K  C   : E  P  Y  I  N  G  C  *  C  T  E  R  K  W  N  W :   *  K  R  Y  S  S  C  Y  P  *  R  W  K  T  G  G  *  C  K  *  Q  L  K  *  F  Q  Q  *  F  R  L  I  L  *  * :   F  *  *  *  *  F  F  S  I  W  I  R  G  G  A  I  T  Q  D  M  T  S  S  *   : *  N  L  D  Y  E  C  I  R  A  D  G  C  S  N  T  H  L  K  D  V  V  W  L  L  H  D  K  F  L  S  R  T  S  S  M  G  G  S  E  V  L  V  N  L  G  A  C  *  L  L  A  L  T  F  F  S  V  I  *  L  V  I  D  K  L  Y  T  E  G  G  G  Y  G  G  S  T  V  R  V  F  N  T  C  L  L  N  *  N  I  V  C  *  K  N  L  C  F  Q  C  H  C  Q  Q  F  G  R  I  M  I  H  A  R  S  C  S  C  N  L  D  V  Q  R  A  *  *  A  D  D  V  Y  C  L  F  A  L  G  V  F  I  A  L  *  Y  H  H  Q  G  F  I  W  K  *  Q  *  E  G  V  H  T  F  S  I  S  C  L  A  S  *  Y  A  A  S  Y  *  L  T   </second_frame>
            <third_frame>   D  K  H  R  L  Q  V  F  R  N  C  S  S  L  L  Q  R  L  M  K  H  K  H  G  W  V  F  N  E  P  V  N  V  K  S  L  G  L  H  D  Y  H  D  I  I  K  H  P  M  D  L  G  T  I  K  T  R  L  S  D  D  W  Y  K  S  P  M  E  F  A  E  D  V  R  L  V  F  R  N  A  M  T  Y  N  P  R  G  Q  D  V  H  V  M  A  E  Q  L  S  E  I  F  E  E  R  W  A  V  I  E  A  E  Y  H  S  D  W  R  Y  Q  M  Y  H  D  V  G  A  P  T  P  T  S  R  M  T  S  Y  P  P  P  F  L  H  T  P  V  S  S  R  S  L  A  P  H  A  R  Q  L  H  P  L  D  R  S  E  S  M  T  R  P  V  N  P  K  M  K  T  S  N  I  A  H  V  T  R  T  P  V  P  K  K  P  K  A  K  D  L  N  K  R  D  M  T  Y  E  E  K  Q  K  L  S  T  N  L  Q  N  L  P  S  E  K  L  D  A  I  V  Q  I  I  K  K  R  N  T  A  L  S  Q  D  N  D  E  I  E  V  D  I  D  S  V  D  A  E  T  L  W  E  L  D  R  F  V  T  N  F  K  K  S  F  S  K  Y  K  R  K  A  E  L  L  R  A  R  E  G  A  A  Q  A  A  R  N  V  :  N  P  T  S  M  V  A  D  A  L  K  E  N  G  T   : G  E  K  D  T  A  P  A  T  L  E  G  G  R  P  A  D  S  A  S  S  S  S  S  S  S  S  S  D  S  G  S  S  S  S   : D  S  D  S  D  S  S  S  A  S  G  S  E  A  A  Q  S  P  R  T  *  Q  A  L  D  :  E  I  W  I  M  N  A  S  E  Q  T  A  V  Q  T  L  I  *  K  T  S  C  G  S  C  M  I  S  F  F  Q  E  L  Q  V  W  E  E  V  K  S  *  *  I  W  E  H  V  S  C  W  R  S  H  S  S  L  S  Y  S  L  S  S  T  S  Y  I  Q  R  E  V  V  M  V  V  V  L  *  G  Y  L  T  P  V  C  *  I  K  I  L  C  A  E  K  I  Y  V  F  S  V  I  V  N  N  L  A  G  S  *  F  M  Q  G  P  A  A  V  T  W  M  Y  K  E  H  N  R  L  M  M  C  I  V  C  L  L  W  E  Y  L  L  H  C  N  I  T  I  R  D  L  Y  G  N  N  S  R  R  V  Y  I  L  S  Q  F  L  V  W  H  H  N  M  R  Q  V  I  N  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13084" stop="13956"/>
                    <exon start="14063" stop="14108"/>
                    <exon start="14204" stop="14308"/>
                    <exon start="14429" stop="14490"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKHRLQVFRNCSSLLQRLMKHKHGWVFNEPVNVKSLGLHDYHDIIKHPMDLGTIKTRLSDDWYKSPMEFAEDVRLVFRNAMTYNPRGQDVHVMAEQLSEIFEERWAVIEAEYHSDWRYQMYHDVGAPTPTSRMTSYPPPFLHTPVSSRSLAPHARQLHPLDRSESMTRPVNPKMKTSNIAHVTRTPVPKKPKAKDLNKRDMTYEEKQKLSTNLQNLPSEKLDAIVQIIKKRNTALSQDNDEIEVDIDSVDAETLWELDRFVTNFKKSFSKYKRKAELLRAREGAAQAARNVNPTSMVADALKENGTGEKDTAPATLEGGRPADSASSSSSSSSSDSGSSSSDSDSDSSSASGSEAAQSPRT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17512" stop="17712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMQGPAAVTWMYKEHNRLMMCIVCLLWEYLLHCNITIRDLYGNNSRRVYILSQFLVWHHNMRQVIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20979" PGL_stop="17821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20979" e_stop="20586"/>
            <exon e_start="20009" e_stop="19836"/>
            <exon e_start="19726" e_stop="19558"/>
            <exon e_start="19440" e_stop="19379"/>
            <exon e_start="19195" e_stop="19074"/>
            <exon e_start="18829" e_stop="18712"/>
            <exon e_start="18230" e_stop="17821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.718" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="20979" e_stop="20586" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20585" i_stop="20010" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20009" e_stop="19836" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.718" acc_prob="0.960">
            <gDNA_intron_boundary i_start="19835" i_stop="19727" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19726" e_stop="19558" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19557" i_stop="19441" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19440" e_stop="19379" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19378" i_stop="19196" i_length="183"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19195" e_stop="19074" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="19073" i_stop="18830" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18829" e_stop="18712" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18711" i_stop="18231" i_length="481"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18230" e_stop="17821" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20979" stop="20586"/>
              <exon start="20009" stop="19836"/>
              <exon start="19726" stop="19558"/>
              <exon start="19440" stop="19379"/>
              <exon start="19195" stop="19074"/>
              <exon start="18829" stop="18712"/>
              <exon start="18230" stop="17821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18112" stop="17821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334183" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTTATCACAAATGAAAGTTTTGACAGGCTTTTTTTGTTGCCAATAAATAGTGCCCACACAGTAACACACCACAACTCCTAATTTATTTTCTCCGCCGTAGCTTTTACCTTTTCCTCATTTCTTTTGTATATTCCGAAATGAGGACCTCCATGTTGAAATCCATCGTCCGCCGGAGCTCCACTGCCGGAGCATCCTATGTATCTCGCCGTGGATTCGCATCGGGATCCGCGCCGGAGAGGAAAGTTGCAGTTTTGGGGGCAGCCGGAGGGATTGGACAGCCTTTATCTCTTCTAATGAAGCTTAACCCTTTAGTATCCAGCCTTTCACTCTACGATATCGCCGGTACTCCCGGTGTTGCCGCCGATGTTAGTCACATCAACACCAGATCTGAG : GTTGCCGGTTTTGCAGGAGAAGAGCAGCTAGGGCAGGCACTGGAAGGAGCTGATGTTGTTATCATTCCTGCTGGTGTGCCCCGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACGGCCATTGCTAAGTACTGCCCCAAT : GCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAGGTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGAAAAGCTAAAGTAAATGTTGCTG : AGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAA : GCCACTCCAAAGGCAAATCTATCAGATGAGGAAATTGTTGCACTCACAAAGCGAACCCAAGATGGTGGGACAGAAGTTGTAGAGGCCAAGGCTGGAAAGGGTTCAGCCACCCTCTCAATGGC : CTATGCTGGGGCTATTTTTGCCGATGCTTGCTTGAAGGGGTTGAATGGAGTTCCCGATGTTGTTGAATGTGCTTTTGTGCAGTCCAATGTCACCGAGCTTCCCTTCTTCGCATCCAAG : GTAAGACTTGGGAAAAATGGAGTGGAGGAAGTCCTAGGGTTGGGTCCACTTAACGACTACGAGAAGCAAGGACTTGAGGCTCTTAAGCCAGAGCTGCTCTCCTCCATTGAAAAGGGAATCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTTGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCCTATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATGAATCGTTTTCCAATTATGGTTAGTAGCAGACAATTGATGCAAAATGAAGAAATGTTCATGACCA</gDNA_template>
            <first_frame> S  L  S  Q  M  K  V  L  T  G  F  F  C  C  Q  *  I  V  P  T  Q  *  H  T  T  T  P  N  L  F  S  P  P  *  L  L  P  F  P  H  F  F  C  I  F  R  N  E  D  L  H  V  E  I  H  R  P  P  E  L  H  C  R  S  I  L  C  I  S  P  W  I  R  I  G  I  R  A  G  E  E  S  C  S  F  G  G  S  R  R  D  W  T  A  F  I  S  S  N  E  A  *  P  F  S  I  Q  P  F  T  L  R  Y  R  R  Y  S  R  C  C  R  R  C  *  S  H  Q  H  Q  I  *   : G  C  R  F  C  R  R  R  A  A  R  A  G  T  G  R  S  *  C  C  Y  H  S  C  W  C  A  P  K  A  W  Y  D  P  R  *  S  V  Q  H  *  C  G  Y  C  *  I  S  M  H  G  H  C  *  V  L  P  Q   : C  S  G  Q  Y  D  K  Q  P  S  E  F  H  C  P  Y  C  C  *  G  V  *  E  S  W  N  L  *  *  K  E  A  L  W  S  Y  H  A  *  C  G  *  G  Q  D  I  L  C  W  K  S  *  S  K  C  C  * :   G  Q  S  P  S  S  W  W  S  C  W  H  N  Y  P  P  I  I  F  S   : S  H  S  K  G  K  S  I  R  *  G  N  C  C  T  H  K  A  N  P  R  W  W  D  R  S  C  R  G  Q  G  W  K  G  F  S  H  P  L  N  G  :  L  C  W  G  Y  F  C  R  C  L  L  E  G  V  E  W  S  S  R  C  C  *  M  C  F  C  A  V  Q  C  H  R  A  S  L  L  R  I  Q   : G  K  T  W  E  K  W  S  G  G  S  P  R  V  G  S  T  *  R  L  R  E  A  R  T  *  G  S  *  A  R  A  A  L  L  H  *  K  G  N  Q  V  C  Q  R  K  L  K  K  Q  N  Y  G  L  V  F  Y  S  D  S  F  G  S  F  W  V  N  C  F  C  I  L  C  K  F  L  A  A  G  G  L  D  L  A  L  L  I  L  Y  P  T  F  L  Q  N  N  V  W  Q  T  G  G  L  S  H  L  P  *  C  G  G  V  I  L  T  *  I  V  F  Q  L  W  L  V  A  D  N  *  C  K  M  K  K  C  S  *  P </first_frame>
            <second_frame>  R  Y  H  K  *  K  F  *  Q  A  F  F  V  A  N  K  *  C  P  H  S  N  T  P  Q  L  L  I  Y  F  L  R  R  S  F  Y  L  F  L  I  S  F  V  Y  S  E  M  R  T  S  M  L  K  S  I  V  R  R  S  S  T  A  G  A  S  Y  V  S  R  R  G  F  A  S  G  S  A  P  E  R  K  V  A  V  L  G  A  A  G  G  I  G  Q  P  L  S  L  L  M  K  L  N  P  L  V  S  S  L  S  L  Y  D  I  A  G  T  P  G  V  A  A  D  V  S  H  I  N  T  R  S  E  :  V  A  G  F  A  G  E  E  Q  L  G  Q  A  L  E  G  A  D  V  V  I  I  P  A  G  V  P  R  K  P  G  M  T  R  D  D  L  F  N  I  N  A  G  I  V  K  S  L  C  T  A  I  A  K  Y  C  P  N  :  A  L  V  N  M  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  F  K  K  A  G  T  Y  D  E  K  K  L  F  G  V  T  M  L  D  V  V  R  A  K  T  F  Y  A  G  K  A  K  V  N  V  A   : E  V  N  L  P  V  V  G  G  H  A  G  I  T  I  L  P  L  F  S  Q  :  A  T  P  K  A  N  L  S  D  E  E  I  V  A  L  T  K  R  T  Q  D  G  G  T  E  V  V  E  A  K  A  G  K  G  S  A  T  L  S  M  A :   Y  A  G  A  I  F  A  D  A  C  L  K  G  L  N  G  V  P  D  V  V  E  C  A  F  V  Q  S  N  V  T  E  L  P  F  F  A  S  K  :  V  R  L  G  K  N  G  V  E  E  V  L  G  L  G  P  L  N  D  Y  E  K  Q  G  L  E  A  L  K  P  E  L  L  S  S  I  E  K  G  I  K  F  A  K  E  N  *  K  N  K  I  M  V  *  F  S  I  V  T  V  L  D  L  F  G  S  I  V  F  V  S  F  A  S  F  L  Q  P  E  A  *  I  *  L  F  *  Y  Y  T  Q  H  F  Y  K  I  M  Y  G  K  L  G  A  Y  P  I  C  L  S  V  E  V  L  F  S  H  E  S  F  S  N  Y  G  *  *  Q  T  I  D  A  K  *  R  N  V  H  D   </second_frame>
            <third_frame>   V  I  T  N  E  S  F  D  R  L  F  L  L  P  I  N  S  A  H  T  V  T  H  H  N  S  *  F  I  F  S  A  V  A  F  T  F  S  S  F  L  L  Y  I  P  K  *  G  P  P  C  *  N  P  S  S  A  G  A  P  L  P  E  H  P  M  Y  L  A  V  D  S  H  R  D  P  R  R  R  G  K  L  Q  F  W  G  Q  P  E  G  L  D  S  L  Y  L  F  *  *  S  L  T  L  *  Y  P  A  F  H  S  T  I  S  P  V  L  P  V  L  P  P  M  L  V  T  S  T  P  D  L  R :   L  P  V  L  Q  E  K  S  S  *  G  R  H  W  K  E  L  M  L  L  S  F  L  L  V  C  P  E  S  L  V  *  P  E  M  I  C  S  T  L  M  R  V  L  L  N  L  Y  A  R  P  L  L  S  T  A  P  M :   L  W  S  I  *  *  A  T  Q  *  I  P  L  S  L  L  L  L  R  C  L  R  K  L  E  L  M  M  K  R  S  S  L  E  L  P  C  L  M  W  L  G  P  R  H  F  M  L  E  K  L  K  *  M  L  L  :  R  S  I  S  Q  *  L  V  V  M  L  A  *  L  S  S  H  Y  F  L  K :   P  L  Q  R  Q  I  Y  Q  M  R  K  L  L  H  S  Q  S  E  P  K  M  V  G  Q  K  L  *  R  P  R  L  E  R  V  Q  P  P  S  Q  W   : P  M  L  G  L  F  L  P  M  L  A  *  R  G  *  M  E  F  P  M  L  L  N  V  L  L  C  S  P  M  S  P  S  F  P  S  S  H  P  R :   *  D  L  G  K  M  E  W  R  K  S  *  G  W  V  H  L  T  T  T  R  S  K  D  L  R  L  L  S  Q  S  C  S  P  P  L  K  R  E  S  S  L  P  K  K  T  K  K  T  K  L  W  S  S  F  L  *  *  Q  F  W  I  F  L  G  Q  L  F  L  Y  P  L  Q  V  S  C  S  R  R  L  R  F  S  S  F  D  I  I  P  N  I  S  T  K  *  C  M  A  N  W  G  P  I  P  F  A  L  V  W  R  C  Y  S  H  M  N  R  F  P  I  M  V  S  S  R  Q  L  M  Q  N  E  E  M  F  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20927" stop="20586"/>
                    <exon start="20009" stop="19836"/>
                    <exon start="19726" stop="19558"/>
                    <exon start="19440" stop="19379"/>
                    <exon start="19195" stop="19074"/>
                    <exon start="18829" stop="18712"/>
                    <exon start="18230" stop="18090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPHSNTPQLLIYFLRRSFYLFLISFVYSEMRTSMLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVAGFAGEEQLGQALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTMLDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQATPKANLSDEEIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECAFVQSNVTELPFFASKVRLGKNGVEEVLGLGPLNDYEKQGLEALKPELLSSIEKGIKFAKEN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18120" stop="17908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNQVCQRKLKKQNYGLVFYSDSFGSFWVNCFCILCKFLAAGGLDLALLILYPTFLQNNVWQTGGLSHLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19928" e_stop="19860"/>
            <exon e_start="19394" e_stop="19379"/>
            <exon e_start="19195" e_stop="19074"/>
            <exon e_start="18829" e_stop="18712"/>
            <exon e_start="18230" e_stop="17821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.938"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19928" e_stop="19860" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19859" i_stop="19395" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="19394" e_stop="19379" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19378" i_stop="19196" i_length="183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19195" e_stop="19074" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="19073" i_stop="18830" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18829" e_stop="18712" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18711" i_stop="18231" i_length="481"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="18230" e_stop="17821" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19928" stop="19860"/>
              <exon start="19394" stop="19379"/>
              <exon start="19195" stop="19074"/>
              <exon start="18829" stop="18712"/>
              <exon start="18230" stop="17876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18112" stop="17821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334183" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACG : CCCATTATTTTCTCAA : GCCACTCCAAAGGCAAATCTATCAGATGAGGAAATTGTTGCACTCACAAAGCGAACCCAAGATGGTGGGACAGAAGTTGTAGAGGCCAAGGCTGGAAAGGGTTCAGCCACCCTCTCAATGGC : CTATGCTGGGGCTATTTTTGCCGATGCTTGCTTGAAGGGGTTGAATGGAGTTCCCGATGTTGTTGAATGTGCTTTTGTGCAGTCCAATGTCACCGAGCTTCCCTTCTTCGCATCCAAG : GTAAGACTTGGGAAAAATGGAGTGGAGGAAGTCCTAGGGTTGGGTCCACTTAACGACTACGAGAAGCAAGGACTTGAGGCTCTTAAGCCAGAGCTGCTCTCCTCCATTGAAAAGGGAATCAAGTTTGCCAAAGAAAACTAAAAAAACAAAATTATGGTCTAGTTTTCTATAGTGACAGTTTTGGATCTTTTTGGGTCAATTGTTTTTGTATCCTTTGCAAGTTTCTTGCAGCCGGAGGCTTAGATTTAGCTCTTTTGATATTATACCCAACATTTCTACAAAATAATGTATGGCAAACTGGGGGCCTATCCCATTTGCCTTAGTGTGGAGGTGTTATTCTCACATGAATCGTTTTCCAATTATGGTTAGTAGCAGACAATTGATGCAAAATGAAGAAATGTTCATGACCA</gDNA_template>
            <first_frame> R  K  P  G  M  T  R  D  D  L  F  N  I  N  A  G  I  V  K  S  L  C  T  :  P  I  I  F  S   : S  H  S  K  G  K  S  I  R  *  G  N  C  C  T  H  K  A  N  P  R  W  W  D  R  S  C  R  G  Q  G  W  K  G  F  S  H  P  L  N  G  :  L  C  W  G  Y  F  C  R  C  L  L  E  G  V  E  W  S  S  R  C  C  *  M  C  F  C  A  V  Q  C  H  R  A  S  L  L  R  I  Q   : G  K  T  W  E  K  W  S  G  G  S  P  R  V  G  S  T  *  R  L  R  E  A  R  T  *  G  S  *  A  R  A  A  L  L  H  *  K  G  N  Q  V  C  Q  R  K  L  K  K  Q  N  Y  G  L  V  F  Y  S  D  S  F  G  S  F  W  V  N  C  F  C  I  L  C  K  F  L  A  A  G  G  L  D  L  A  L  L  I  L  Y  P  T  F  L  Q  N  N  V  W  Q  T  G  G  L  S  H  L  P  *  C  G  G  V  I  L  T  *  I  V  F  Q  L  W  L  V  A  D  N  *  C  K  M  K  K  C  S  *  P </first_frame>
            <second_frame>  E  S  L  V  *  P  E  M  I  C  S  T  L  M  R  V  L  L  N  L  Y  A  R :   P  L  F  S  Q  :  A  T  P  K  A  N  L  S  D  E  E  I  V  A  L  T  K  R  T  Q  D  G  G  T  E  V  V  E  A  K  A  G  K  G  S  A  T  L  S  M  A :   Y  A  G  A  I  F  A  D  A  C  L  K  G  L  N  G  V  P  D  V  V  E  C  A  F  V  Q  S  N  V  T  E  L  P  F  F  A  S  K  :  V  R  L  G  K  N  G  V  E  E  V  L  G  L  G  P  L  N  D  Y  E  K  Q  G  L  E  A  L  K  P  E  L  L  S  S  I  E  K  G  I  K  F  A  K  E  N  *  K  N  K  I  M  V  *  F  S  I  V  T  V  L  D  L  F  G  S  I  V  F  V  S  F  A  S  F  L  Q  P  E  A  *  I  *  L  F  *  Y  Y  T  Q  H  F  Y  K  I  M  Y  G  K  L  G  A  Y  P  I  C  L  S  V  E  V  L  F  S  H  E  S  F  S  N  Y  G  *  *  Q  T  I  D  A  K  *  R  N  V  H  D   </second_frame>
            <third_frame>   K  A  W  Y  D  P  R  *  S  V  Q  H  *  C  G  Y  C  *  I  S  M  H   : A  H  Y  F  L  K :   P  L  Q  R  Q  I  Y  Q  M  R  K  L  L  H  S  Q  S  E  P  K  M  V  G  Q  K  L  *  R  P  R  L  E  R  V  Q  P  P  S  Q  W   : P  M  L  G  L  F  L  P  M  L  A  *  R  G  *  M  E  F  P  M  L  L  N  V  L  L  C  S  P  M  S  P  S  F  P  S  S  H  P  R :   *  D  L  G  K  M  E  W  R  K  S  *  G  W  V  H  L  T  T  T  R  S  K  D  L  R  L  L  S  Q  S  C  S  P  P  L  K  R  E  S  S  L  P  K  K  T  K  K  T  K  L  W  S  S  F  L  *  *  Q  F  W  I  F  L  G  Q  L  F  L  Y  P  L  Q  V  S  C  S  R  R  L  R  F  S  S  F  D  I  I  P  N  I  S  T  K  *  C  M  A  N  W  G  P  I  P  F  A  L  V  W  R  C  Y  S  H  M  N  R  F  P  I  M  V  S  S  R  Q  L  M  Q  N  E  E  M  F  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19912" stop="19860"/>
                    <exon start="19394" stop="19379"/>
                    <exon start="19195" stop="19074"/>
                    <exon start="18829" stop="18712"/>
                    <exon start="18230" stop="18090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEMICSTLMRVLLNLYARPLFSQATPKANLSDEEIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECAFVQSNVTELPFFASKVRLGKNGVEEVLGLGPLNDYEKQGLEALKPELLSSIEKGIKFAKEN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18120" stop="17908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNQVCQRKLKKQNYGLVFYSDSFGSFWVNCFCILCKFLAAGGLDLALLILYPTFLQNNVWQTGGLSHLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20877" e_stop="20586"/>
            <exon e_start="20009" e_stop="19558"/>
            <exon e_start="19440" e_stop="19379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20877" e_stop="20586" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20585" i_stop="20010" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20009" e_stop="19558" e_length="452"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19557" i_stop="19441" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19440" e_stop="19379" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20877" stop="20586"/>
              <exon start="20009" stop="19558"/>
              <exon start="19440" stop="19379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTACCTTTTCCTCATTTCTTTTGTATATTCCGAAATGAGGACCTCCATGTTGAAATCCATCGTCCGCCGGAGCTCCACTGCCGGAGCATCCTATGTATCTCGCCGTGGATTCGCATCGGGATCCGCGCCGGAGAGGAAAGTTGCAGTTTTGGGGGCAGCCGGAGGGATTGGACAGCCTTTATCTCTTCTAATGAAGCTTAACCCTTTAGTATCCAGCCTTTCACTCTACGATATCGCCGGTACTCCCGGTGTTGCCGCCGATGTTAGTCACATCAACACCAGATCTGAG : GTTGCCGGTTTTGCAGGAGAAGAGCAGCTAGGGCAGGCACTGGAAGGAGCTGATGTTGTTATCATTCCTGCTGGTGTGCCCCGAAAGCCTGGTATGACCCGAGATGATCTGTTCAACATTAATGCGGGTATTGTTAAATCTCTATGCACGGCCATTGCTAAGTACTGCCCCAATGTGAGTATGCTTGTGTAATTATCTCTGTATATGGGGGTTATATATAGGAGATTCTAGAAAAAGTTTCTGATTAATTTTCTCATTTGCTGCTTGTTCTGATAACTTAAAGGCTCTGGTCAATATGATAAGCAACCCAGTGAATTCCACTGTCCCTATTGCTGCTGAGGTGTTTAAGAAAGCTGGAACTTATGATGAAAAGAAGCTCTTTGGAGTTACCATGCTTGATGTGGTTAGGGCCAAGACATTTTATGCTGGAAAAGCTAAAGTAAATGTTGCTG : AGGTCAATCTCCCAGTAGTTGGTGGTCATGCTGGCATAACTATCCTCCCATTATTTTCTCAA</gDNA_template>
            <first_frame> L  L  P  F  P  H  F  F  C  I  F  R  N  E  D  L  H  V  E  I  H  R  P  P  E  L  H  C  R  S  I  L  C  I  S  P  W  I  R  I  G  I  R  A  G  E  E  S  C  S  F  G  G  S  R  R  D  W  T  A  F  I  S  S  N  E  A  *  P  F  S  I  Q  P  F  T  L  R  Y  R  R  Y  S  R  C  C  R  R  C  *  S  H  Q  H  Q  I  *   : G  C  R  F  C  R  R  R  A  A  R  A  G  T  G  R  S  *  C  C  Y  H  S  C  W  C  A  P  K  A  W  Y  D  P  R  *  S  V  Q  H  *  C  G  Y  C  *  I  S  M  H  G  H  C  *  V  L  P  Q  C  E  Y  A  C  V  I  I  S  V  Y  G  G  Y  I  *  E  I  L  E  K  V  S  D  *  F  S  H  L  L  L  V  L  I  T  *  R  L  W  S  I  *  *  A  T  Q  *  I  P  L  S  L  L  L  L  R  C  L  R  K  L  E  L  M  M  K  R  S  S  L  E  L  P  C  L  M  W  L  G  P  R  H  F  M  L  E  K  L  K  *  M  L  L  :  R  S  I  S  Q  *  L  V  V  M  L  A  *  L  S  S  H  Y  F  L   </first_frame>
            <second_frame>  F  Y  L  F  L  I  S  F  V  Y  S  E  M  R  T  S  M  L  K  S  I  V  R  R  S  S  T  A  G  A  S  Y  V  S  R  R  G  F  A  S  G  S  A  P  E  R  K  V  A  V  L  G  A  A  G  G  I  G  Q  P  L  S  L  L  M  K  L  N  P  L  V  S  S  L  S  L  Y  D  I  A  G  T  P  G  V  A  A  D  V  S  H  I  N  T  R  S  E  :  V  A  G  F  A  G  E  E  Q  L  G  Q  A  L  E  G  A  D  V  V  I  I  P  A  G  V  P  R  K  P  G  M  T  R  D  D  L  F  N  I  N  A  G  I  V  K  S  L  C  T  A  I  A  K  Y  C  P  N  V  S  M  L  V  *  L  S  L  Y  M  G  V  I  Y  R  R  F  *  K  K  F  L  I  N  F  L  I  C  C  L  F  *  *  L  K  G  S  G  Q  Y  D  K  Q  P  S  E  F  H  C  P  Y  C  C  *  G  V  *  E  S  W  N  L  *  *  K  E  A  L  W  S  Y  H  A  *  C  G  *  G  Q  D  I  L  C  W  K  S  *  S  K  C  C  * :   G  Q  S  P  S  S  W  W  S  C  W  H  N  Y  P  P  I  I  F  S  </second_frame>
            <third_frame>   F  T  F  S  S  F  L  L  Y  I  P  K  *  G  P  P  C  *  N  P  S  S  A  G  A  P  L  P  E  H  P  M  Y  L  A  V  D  S  H  R  D  P  R  R  R  G  K  L  Q  F  W  G  Q  P  E  G  L  D  S  L  Y  L  F  *  *  S  L  T  L  *  Y  P  A  F  H  S  T  I  S  P  V  L  P  V  L  P  P  M  L  V  T  S  T  P  D  L  R :   L  P  V  L  Q  E  K  S  S  *  G  R  H  W  K  E  L  M  L  L  S  F  L  L  V  C  P  E  S  L  V  *  P  E  M  I  C  S  T  L  M  R  V  L  L  N  L  Y  A  R  P  L  L  S  T  A  P  M  *  V  C  L  C  N  Y  L  C  I  W  G  L  Y  I  G  D  S  R  K  S  F  *  L  I  F  S  F  A  A  C  S  D  N  L  K  A  L  V  N  M  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  F  K  K  A  G  T  Y  D  E  K  K  L  F  G  V  T  M  L  D  V  V  R  A  K  T  F  Y  A  G  K  A  K  V  N  V  A   : E  V  N  L  P  V  V  G  G  H  A  G  I  T  I  L  P  L  F  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20876" stop="20586"/>
                    <exon start="20009" stop="19818"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYLFLISFVYSEMRTSMLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVAGFAGEEQLGQALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNVSMLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19765" stop="19558"/>
                    <exon start="19440" stop="19379"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFSFAACSDNLKALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTMLDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20990" PGL_stop="22087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20990" e_stop="21061"/>
            <exon e_start="21172" e_stop="21230"/>
            <exon e_start="21338" e_stop="22087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-intron don_prob="0.826" acc_prob="0.580" e_score="0.915"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="20990" e_stop="21061" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21062" i_stop="21171" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="21172" e_stop="21230" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.580">
            <gDNA_intron_boundary i_start="21231" i_stop="21337" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.901">
            <gDNA_exon_boundary e_start="21338" e_stop="22087" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20990" stop="21061"/>
              <exon start="21172" stop="21230"/>
              <exon start="21338" stop="22087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTTTTATCATATTAGATCTCGATTAAATTTGAAACTTTTTTATTGAATAGTAGACTCTTGAATTCAAA : CATGTGATTAAAGACGATTGTTCGTATGTCCAGGGGATGAATCTTGTTTGAAACAAATG : ATGATATAAATTTATCAAACATGCAACAAGAAATTCTTCGTGATCATGCATAATTATTTTCAAGAATGTGACTAAATACGATTGTTCGTATGTCTGGGAGATGAATCTTGTCTGAAATAGATAGTATGAATTTATCAAATATTCAACAAGAAATTCTTCGTGATCATACATAATTATTGTCAAGCATGTGATTAAAGACGATTGTTCATATATTCAGGGGATGAATGTTTTTTTTTTGAAATAGATGGTATGAATTTGTCAAATATTCAACAAGAAATTCTTCGTGATCATACATAATTATTTTCAAGGATGTGACTAAAGACGATTGTTCGTATGTATGGGGAATAAATCTTGTCTGAAATAGATGGTATGAATTTATCAAATATTCAGCAAGAAATTCTTCGTGATCATACATAATTATTTTCAAGCATGTGATTAAAGACGATTGTTCATATATTCAGGGGATGAATCTTTTTTTTGAAATAGATGGTATGAATTTGTCAAATATTCAACAAGAAATTCTTCGTGATCATACATAATTATTTTCAAGCATGTGATTAAAGACGGTTGTTCGTATGTCCAAGGGATGAATCTTGTTTGAAACAGATGGTATGAATTTATCGAATATTCAACAAGAAAGAAATTCTTCGTGATCATACATAATTATTGTCAAGCATGTGACTAAAGACGATTGTTCGTATGTCTGGGGGATGAATCTTATCTGAAATAGATGGTATGAATTTATCAAAT</gDNA_template>
            <first_frame> I  S  F  I  I  L  D  L  D  *  I  *  N  F  F  I  E  *  *  T  L  E  F  K  :  H  V  I  K  D  D  C  S  Y  V  Q  G  M  N  L  V  *  N  K  * :   *  Y  K  F  I  K  H  A  T  R  N  S  S  *  S  C  I  I  I  F  K  N  V  T  K  Y  D  C  S  Y  V  W  E  M  N  L  V  *  N  R  *  Y  E  F  I  K  Y  S  T  R  N  S  S  *  S  Y  I  I  I  V  K  H  V  I  K  D  D  C  S  Y  I  Q  G  M  N  V  F  F  L  K  *  M  V  *  I  C  Q  I  F  N  K  K  F  F  V  I  I  H  N  Y  F  Q  G  C  D  *  R  R  L  F  V  C  M  G  N  K  S  C  L  K  *  M  V  *  I  Y  Q  I  F  S  K  K  F  F  V  I  I  H  N  Y  F  Q  A  C  D  *  R  R  L  F  I  Y  S  G  D  E  S  F  F  *  N  R  W  Y  E  F  V  K  Y  S  T  R  N  S  S  *  S  Y  I  I  I  F  K  H  V  I  K  D  G  C  S  Y  V  Q  G  M  N  L  V  *  N  R  W  Y  E  F  I  E  Y  S  T  R  K  K  F  F  V  I  I  H  N  Y  C  Q  A  C  D  *  R  R  L  F  V  C  L  G  D  E  S  Y  L  K  *  M  V  *  I  Y  Q   </first_frame>
            <second_frame>  F  L  L  S  Y  *  I  S  I  K  F  E  T  F  L  L  N  S  R  L  L  N  S  N :   M  *  L  K  T  I  V  R  M  S  R  G  *  I  L  F  E  T  N   : D  D  I  N  L  S  N  M  Q  Q  E  I  L  R  D  H  A  *  L  F  S  R  M  *  L  N  T  I  V  R  M  S  G  R  *  I  L  S  E  I  D  S  M  N  L  S  N  I  Q  Q  E  I  L  R  D  H  T  *  L  L  S  S  M  *  L  K  T  I  V  H  I  F  R  G  *  M  F  F  F  *  N  R  W  Y  E  F  V  K  Y  S  T  R  N  S  S  *  S  Y  I  I  I  F  K  D  V  T  K  D  D  C  S  Y  V  W  G  I  N  L  V  *  N  R  W  Y  E  F  I  K  Y  S  A  R  N  S  S  *  S  Y  I  I  I  F  K  H  V  I  K  D  D  C  S  Y  I  Q  G  M  N  L  F  F  E  I  D  G  M  N  L  S  N  I  Q  Q  E  I  L  R  D  H  T  *  L  F  S  S  M  *  L  K  T  V  V  R  M  S  K  G  *  I  L  F  E  T  D  G  M  N  L  S  N  I  Q  Q  E  R  N  S  S  *  S  Y  I  I  I  V  K  H  V  T  K  D  D  C  S  Y  V  W  G  M  N  L  I  *  N  R  W  Y  E  F  I  K  </second_frame>
            <third_frame>   F  F  Y  H  I  R  S  R  L  N  L  K  L  F  Y  *  I  V  D  S  *  I  Q   : T  C  D  *  R  R  L  F  V  C  P  G  D  E  S  C  L  K  Q  M  :  M  I  *  I  Y  Q  T  C  N  K  K  F  F  V  I  M  H  N  Y  F  Q  E  C  D  *  I  R  L  F  V  C  L  G  D  E  S  C  L  K  *  I  V  *  I  Y  Q  I  F  N  K  K  F  F  V  I  I  H  N  Y  C  Q  A  C  D  *  R  R  L  F  I  Y  S  G  D  E  C  F  F  F  E  I  D  G  M  N  L  S  N  I  Q  Q  E  I  L  R  D  H  T  *  L  F  S  R  M  *  L  K  T  I  V  R  M  Y  G  E  *  I  L  S  E  I  D  G  M  N  L  S  N  I  Q  Q  E  I  L  R  D  H  T  *  L  F  S  S  M  *  L  K  T  I  V  H  I  F  R  G  *  I  F  F  L  K  *  M  V  *  I  C  Q  I  F  N  K  K  F  F  V  I  I  H  N  Y  F  Q  A  C  D  *  R  R  L  F  V  C  P  R  D  E  S  C  L  K  Q  M  V  *  I  Y  R  I  F  N  K  K  E  I  L  R  D  H  T  *  L  L  S  S  M  *  L  K  T  I  V  R  M  S  G  G  *  I  L  S  E  I  D  G  M  N  L  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0308M01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28056" PGL_stop="22555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28056" e_stop="27916"/>
            <exon e_start="26328" e_stop="26141"/>
            <exon e_start="25960" e_stop="24562"/>
            <exon e_start="24426" e_stop="24359"/>
            <exon e_start="23834" e_stop="23793"/>
            <exon e_start="23300" e_stop="23152"/>
            <exon e_start="23070" e_stop="22555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.257" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.974" e_score="0.999"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="28056" e_stop="27916" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.257" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27915" i_stop="26329" i_length="1587"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26328" e_stop="26141" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="26140" i_stop="25961" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="25960" e_stop="24562" e_length="1399"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.974">
            <gDNA_intron_boundary i_start="24561" i_stop="24427" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24426" e_stop="24359" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24358" i_stop="23835" i_length="524"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23834" e_stop="23793" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23792" i_stop="23301" i_length="492"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23300" e_stop="23152" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="23151" i_stop="23071" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23070" e_stop="22555" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28056" stop="27916"/>
              <exon start="26328" stop="26141"/>
              <exon start="25960" stop="24562"/>
              <exon start="24426" stop="24359"/>
              <exon start="23834" stop="23793"/>
              <exon start="23300" stop="23152"/>
              <exon start="23070" stop="22555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTGTGCTTGTCACCATTAATAATATTTTTTCTCTTTTTATATGTATATGCATCTCCTTCATCTTTTTAGCTCAGTGCTTTTGCTTCAGCGTTTAATCTTTGCCTATTGATCAAATTTATGTCTTCTTTGTGCATCTTCG : GTGACACTGCTATTTTGGATAAAGACATTGCCTAGTCTTTAAATGATCATGAAGTGTTATCAGGATATAGTTTCCTGATTGATTCATAGATTGCACCAATGGAGAAATCCAGAAGCAAAAGTTGGGTTGGGAGCATTTACCACAAGTTTGAGGTTGTGTGTCAGGAGGTCGATGAATTTGTAACTAAG : GACACAGTTAAGTATGTCGAGAATCAGGTGCAAACTGTTGGTGCAAACATGAAAAAGTTTTACTCTGGTGTGGTGCCAGAGTTTCTTATCCCTGTGGACAGTCATGTAAAAAAAGAAGCACAGGCTGTCAATGAGAAGCCAAAGCACGCCAGTGACACTCATACTAGTTCAGTGGCCAACACTACTCAGAACCCTATCCAAGAGAAATCATGTCAGAATCAGAATTCCCTTGAAAGTCATGCTGCTTCAACTTCAACTGAACTTGATGGTGTAGCTTCTGAAGAAGCAGAAATTGATCTTTCTGTAGGAAATGAGTGTGCCACTGCGATTTGTAAGAACTCATGTAATGTTTTTAAAGAGAATATGACAAGGGAGGAAGCACTGGTAGTTGACAAACCAAGTACTTCAGAAGACAGAGTTTCATCTGAATCCTGTTCTGACAAAGATTCGAAAGATACCATGTGCTATAGCTTTTCAGATGATGGTAAGTGTTTTTCTGATGTATCAAGCTCTCAGATTATACGACAAGATGATATGGTCGGGGAGGAACAACCACTTGCTAAGGGATCAAGTTCATTTTTGGATAATTTGTCTACATCACAACTCACGGCCTCTATTAATGAAAAAATGTTTGATACTTCTCCTGATGCTATCAACTGTATTTCTAATGTATCAAGTAGTCAAATGGTTTTGCAACGGAACATCACTAGGGAGGTGGAACCTGTCACTGATCAATCAATTTCCTTTGGAGATATGGCTCTATCAAAGTCATTATCATTTTCAATGGAGGAAAGTGAAGGAAATCCCACCATGACTAAGTTACAACGTCCAACTTCAGTTTATGATACAGAACTTAGGACCAACCCAGAGGATGAGAGCATTTCCAATGCTTCAATAACTCTGACGAATTTGCAAGACAATATCATCAGTGAGGATCGACTTGCATCCAAGGAATCAAGTTTTGTCAAAGATAAAAGTTTGCCACTAACCCCAGCATTTGCATCTGTTATACCTCCTTCACGAAATGATGCAGGATTTGGGGCGTCCATTGCCGCGAGTAAGAGTTTTTTGGGTGATGTTACTTTTGTATCTGAAGAGTCTAGTACAACCTTGGCATTAGAAGATGCTCCAAGCGCACTTCAGTCATCTGAACTTGTACTTTCTCGTGTTATGGAGAACAAAAGTATGGATGTTGACACTGGAATATCAAACTGTTCTCTGTTAAAAGAATCTTCAAGCCTGTCAACTTCCTCAATTGGAAACTGTATGCAGGAAGCCGAGTCTGATTTAAGTATCTTCACTGGCCACTCATCTGCCTTGCCTACTTCCTTAGTGAGTGCAAACAATGTTGTTTCTGCCAATCCAGTTCTCTCAAGTACTCTGTTGACAGATTTCAGTG : AAGTAAATGCCTCTAGTTCTCACGAGTTGGTTGGAAATGGTAGGTCCGTTCAAAATGACCTCGAGTGT : AGAATAAAAGGGTTGTGGGATTTCACTAGAGGAACCTCTGTG : GATGTATGAATGATAGCTCCATTGATCTTCCGGGCATGGAAACAATTGATCTAACTGATAAGGAATTGCCCAAGGAAAGTTGTGCCTTCATTGACTACAAATTACACCATCTCGTTTCTTCTAGGCCAAGAAAATATAAGTCGTACAAG : GAATTGATACAGGAGGCATTTGCTCCTCGAAAGAGAAGAATAAAGGAATACGAGCAATTGGCTGTTTTGTATGCAGACGTGGATGCTGAAACGAGCCAGCACGTTGAGCTCTCTCAATTACCTTCTCTTCCTTCACCATGTTTACACTCAACGGAATCGTCCACATGCAACATCTGTGAACCTGAGTGGGAGCTCCTGTAAATGAGCCTTTTTTCCTGTGAAAACAACCCCATGATAATAATTTCTGCTGAGAAGTCTCTCTTTGTAAAGGTTCCGCTATAACGGTTAGCATAATTGAGCTAATCATTAGTCCTACTGTGAGATTAATGGTAGAAACTACATCTTATTTTTCCCTTTCATATAATAAGATAACAATTTTTGATAAATATTTTGATCTCTTTTGTTCACTTGTGACATTGTCTCAGCATTAAGGTTTTGGAGACATGATCAAAGAGCCCAGCTGGTTTTGAGTGTTATTTCTTGATTCTAAGCAATGTACCCAAATTTCTAATGTCA</gDNA_template>
            <first_frame> Y  C  A  C  H  H  *  *  Y  F  F  S  F  Y  M  Y  M  H  L  L  H  L  F  S  S  V  L  L  L  Q  R  L  I  F  A  Y  *  S  N  L  C  L  L  C  A  S  S  :  V  T  L  L  F  W  I  K  T  L  P  S  L  *  M  I  M  K  C  Y  Q  D  I  V  S  *  L  I  H  R  L  H  Q  W  R  N  P  E  A  K  V  G  L  G  A  F  T  T  S  L  R  L  C  V  R  R  S  M  N  L  *  L  R :   T  Q  L  S  M  S  R  I  R  C  K  L  L  V  Q  T  *  K  S  F  T  L  V  W  C  Q  S  F  L  S  L  W  T  V  M  *  K  K  K  H  R  L  S  M  R  S  Q  S  T  P  V  T  L  I  L  V  Q  W  P  T  L  L  R  T  L  S  K  R  N  H  V  R  I  R  I  P  L  K  V  M  L  L  Q  L  Q  L  N  L  M  V  *  L  L  K  K  Q  K  L  I  F  L  *  E  M  S  V  P  L  R  F  V  R  T  H  V  M  F  L  K  R  I  *  Q  G  R  K  H  W  *  L  T  N  Q  V  L  Q  K  T  E  F  H  L  N  P  V  L  T  K  I  R  K  I  P  C  A  I  A  F  Q  M  M  V  S  V  F  L  M  Y  Q  A  L  R  L  Y  D  K  M  I  W  S  G  R  N  N  H  L  L  R  D  Q  V  H  F  W  I  I  C  L  H  H  N  S  R  P  L  L  M  K  K  C  L  I  L  L  L  M  L  S  T  V  F  L  M  Y  Q  V  V  K  W  F  C  N  G  T  S  L  G  R  W  N  L  S  L  I  N  Q  F  P  L  E  I  W  L  Y  Q  S  H  Y  H  F  Q  W  R  K  V  K  E  I  P  P  *  L  S  Y  N  V  Q  L  Q  F  M  I  Q  N  L  G  P  T  Q  R  M  R  A  F  P  M  L  Q  *  L  *  R  I  C  K  T  I  S  S  V  R  I  D  L  H  P  R  N  Q  V  L  S  K  I  K  V  C  H  *  P  Q  H  L  H  L  L  Y  L  L  H  E  M  M  Q  D  L  G  R  P  L  P  R  V  R  V  F  W  V  M  L  L  L  Y  L  K  S  L  V  Q  P  W  H  *  K  M  L  Q  A  H  F  S  H  L  N  L  Y  F  L  V  L  W  R  T  K  V  W  M  L  T  L  E  Y  Q  T  V  L  C  *  K  N  L  Q  A  C  Q  L  P  Q  L  E  T  V  C  R  K  P  S  L  I  *  V  S  S  L  A  T  H  L  P  C  L  L  P  *  *  V  Q  T  M  L  F  L  P  I  Q  F  S  Q  V  L  C  *  Q  I  S  V  :  K  *  M  P  L  V  L  T  S  W  L  E  M  V  G  P  F  K  M  T  S  S  V :   E  *  K  G  C  G  I  S  L  E  E  P  L  W :   M  Y  E  *  *  L  H  *  S  S  G  H  G  N  N  *  S  N  *  *  G  I  A  Q  G  K  L  C  L  H  *  L  Q  I  T  P  S  R  F  F  *  A  K  K  I  *  V  V  Q   : G  I  D  T  G  G  I  C  S  S  K  E  K  N  K  G  I  R  A  I  G  C  F  V  C  R  R  G  C  *  N  E  P  A  R  *  A  L  S  I  T  F  S  S  F  T  M  F  T  L  N  G  I  V  H  M  Q  H  L  *  T  *  V  G  A  P  V  N  E  P  F  F  L  *  K  Q  P  H  D  N  N  F  C  *  E  V  S  L  C  K  G  S  A  I  T  V  S  I  I  E  L  I  I  S  P  T  V  R  L  M  V  E  T  T  S  Y  F  S  L  S  Y  N  K  I  T  I  F  D  K  Y  F  D  L  F  C  S  L  V  T  L  S  Q  H  *  G  F  G  D  M  I  K  E  P  S  W  F  *  V  L  F  L  D  S  K  Q  C  T  Q  I  S  N  V  </first_frame>
            <second_frame>  T  V  L  V  T  I  N  N  I  F  S  L  F  I  C  I  C  I  S  F  I  F  L  A  Q  C  F  C  F  S  V  *  S  L  P  I  D  Q  I  Y  V  F  F  V  H  L  R :   *  H  C  Y  F  G  *  R  H  C  L  V  F  K  *  S  *  S  V  I  R  I  *  F  P  D  *  F  I  D  C  T  N  G  E  I  Q  K  Q  K  L  G  W  E  H  L  P  Q  V  *  G  C  V  S  G  G  R  *  I  C  N  *   : G  H  S  *  V  C  R  E  S  G  A  N  C  W  C  K  H  E  K  V  L  L  W  C  G  A  R  V  S  Y  P  C  G  Q  S  C  K  K  R  S  T  G  C  Q  *  E  A  K  A  R  Q  *  H  S  Y  *  F  S  G  Q  H  Y  S  E  P  Y  P  R  E  I  M  S  E  S  E  F  P  *  K  S  C  C  F  N  F  N  *  T  *  W  C  S  F  *  R  S  R  N  *  S  F  C  R  K  *  V  C  H  C  D  L  *  E  L  M  *  C  F  *  R  E  Y  D  K  G  G  S  T  G  S  *  Q  T  K  Y  F  R  R  Q  S  F  I  *  I  L  F  *  Q  R  F  E  R  Y  H  V  L  *  L  F  R  *  W  *  V  F  F  *  C  I  K  L  S  D  Y  T  T  R  *  Y  G  R  G  G  T  T  T  C  *  G  I  K  F  I  F  G  *  F  V  Y  I  T  T  H  G  L  Y  *  *  K  N  V  *  Y  F  S  *  C  Y  Q  L  Y  F  *  C  I  K  *  S  N  G  F  A  T  E  H  H  *  G  G  G  T  C  H  *  S  I  N  F  L  W  R  Y  G  S  I  K  V  I  I  I  F  N  G  G  K  *  R  K  S  H  H  D  *  V  T  T  S  N  F  S  L  *  Y  R  T  *  D  Q  P  R  G  *  E  H  F  Q  C  F  N  N  S  D  E  F  A  R  Q  Y  H  Q  *  G  S  T  C  I  Q  G  I  K  F  C  Q  R  *  K  F  A  T  N  P  S  I  C  I  C  Y  T  S  F  T  K  *  C  R  I  W  G  V  H  C  R  E  *  E  F  F  G  *  C  Y  F  C  I  *  R  V  *  Y  N  L  G  I  R  R  C  S  K  R  T  S  V  I  *  T  C  T  F  S  C  Y  G  E  Q  K  Y  G  C  *  H  W  N  I  K  L  F  S  V  K  R  I  F  K  P  V  N  F  L  N  W  K  L  Y  A  G  S  R  V  *  F  K  Y  L  H  W  P  L  I  C  L  A  Y  F  L  S  E  C  K  Q  C  C  F  C  Q  S  S  S  L  K  Y  S  V  D  R  F  Q  * :   S  K  C  L  *  F  S  R  V  G  W  K  W  *  V  R  S  K  *  P  R  V   : *  N  K  R  V  V  G  F  H  *  R  N  L  C   : G  C  M  N  D  S  S  I  D  L  P  G  M  E  T  I  D  L  T  D  K  E  L  P  K  E  S  C  A  F  I  D  Y  K  L  H  H  L  V  S  S  R  P  R  K  Y  K  S  Y  K  :  E  L  I  Q  E  A  F  A  P  R  K  R  R  I  K  E  Y  E  Q  L  A  V  L  Y  A  D  V  D  A  E  T  S  Q  H  V  E  L  S  Q  L  P  S  L  P  S  P  C  L  H  S  T  E  S  S  T  C  N  I  C  E  P  E  W  E  L  L  *  M  S  L  F  S  C  E  N  N  P  M  I  I  I  S  A  E  K  S  L  F  V  K  V  P  L  *  R  L  A  *  L  S  *  S  L  V  L  L  *  D  *  W  *  K  L  H  L  I  F  P  F  H  I  I  R  *  Q  F  L  I  N  I  L  I  S  F  V  H  L  *  H  C  L  S  I  K  V  L  E  T  *  S  K  S  P  A  G  F  E  C  Y  F  L  I  L  S  N  V  P  K  F  L  M  S </second_frame>
            <third_frame>   L  C  L  S  P  L  I  I  F  F  L  F  L  Y  V  Y  A  S  P  S  S  F  *  L  S  A  F  A  S  A  F  N  L  C  L  L  I  K  F  M  S  S  L  C  I  F   : G  D  T  A  I  L  D  K  D  I  A  *  S  L  N  D  H  E  V  L  S  G  Y  S  F  L  I  D  S  *  I  A  P  M  E  K  S  R  S  K  S  W  V  G  S  I  Y  H  K  F  E  V  V  C  Q  E  V  D  E  F  V  T  K  :  D  T  V  K  Y  V  E  N  Q  V  Q  T  V  G  A  N  M  K  K  F  Y  S  G  V  V  P  E  F  L  I  P  V  D  S  H  V  K  K  E  A  Q  A  V  N  E  K  P  K  H  A  S  D  T  H  T  S  S  V  A  N  T  T  Q  N  P  I  Q  E  K  S  C  Q  N  Q  N  S  L  E  S  H  A  A  S  T  S  T  E  L  D  G  V  A  S  E  E  A  E  I  D  L  S  V  G  N  E  C  A  T  A  I  C  K  N  S  C  N  V  F  K  E  N  M  T  R  E  E  A  L  V  V  D  K  P  S  T  S  E  D  R  V  S  S  E  S  C  S  D  K  D  S  K  D  T  M  C  Y  S  F  S  D  D  G  K  C  F  S  D  V  S  S  S  Q  I  I  R  Q  D  D  M  V  G  E  E  Q  P  L  A  K  G  S  S  S  F  L  D  N  L  S  T  S  Q  L  T  A  S  I  N  E  K  M  F  D  T  S  P  D  A  I  N  C  I  S  N  V  S  S  S  Q  M  V  L  Q  R  N  I  T  R  E  V  E  P  V  T  D  Q  S  I  S  F  G  D  M  A  L  S  K  S  L  S  F  S  M  E  E  S  E  G  N  P  T  M  T  K  L  Q  R  P  T  S  V  Y  D  T  E  L  R  T  N  P  E  D  E  S  I  S  N  A  S  I  T  L  T  N  L  Q  D  N  I  I  S  E  D  R  L  A  S  K  E  S  S  F  V  K  D  K  S  L  P  L  T  P  A  F  A  S  V  I  P  P  S  R  N  D  A  G  F  G  A  S  I  A  A  S  K  S  F  L  G  D  V  T  F  V  S  E  E  S  S  T  T  L  A  L  E  D  A  P  S  A  L  Q  S  S  E  L  V  L  S  R  V  M  E  N  K  S  M  D  V  D  T  G  I  S  N  C  S  L  L  K  E  S  S  S  L  S  T  S  S  I  G  N  C  M  Q  E  A  E  S  D  L  S  I  F  T  G  H  S  S  A  L  P  T  S  L  V  S  A  N  N  V  V  S  A  N  P  V  L  S  S  T  L  L  T  D  F  S   : E  V  N  A  S  S  S  H  E  L  V  G  N  G  R  S  V  Q  N  D  L  E  C  :  R  I  K  G  L  W  D  F  T  R  G  T  S  V  :  D  V  *  M  I  A  P  L  I  F  R  A  W  K  Q  L  I  *  L  I  R  N  C  P  R  K  V  V  P  S  L  T  T  N  Y  T  I  S  F  L  L  G  Q  E  N  I  S  R  T  R :   N  *  Y  R  R  H  L  L  L  E  R  E  E  *  R  N  T  S  N  W  L  F  C  M  Q  T  W  M  L  K  R  A  S  T  L  S  S  L  N  Y  L  L  F  L  H  H  V  Y  T  Q  R  N  R  P  H  A  T  S  V  N  L  S  G  S  S  C  K  *  A  F  F  P  V  K  T  T  P  *  *  *  F  L  L  R  S  L  S  L  *  R  F  R  Y  N  G  *  H  N  *  A  N  H  *  S  Y  C  E  I  N  G  R  N  Y  I  L  F  F  P  F  I  *  *  D  N  N  F  *  *  I  F  *  S  L  L  F  T  C  D  I  V  S  A  L  R  F  W  R  H  D  Q  R  A  Q  L  V  L  S  V  I  S  *  F  *  A  M  Y  P  N  F  *  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26239" stop="26141"/>
                    <exon start="25960" stop="24562"/>
                    <exon start="24426" stop="24359"/>
                    <exon start="23834" stop="23793"/>
                    <exon start="23300" stop="23292"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1614</number_coding_nucleotides>
                  <number_encoded_amino_acids>538</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAPMEKSRSKSWVGSIYHKFEVVCQEVDEFVTKDTVKYVENQVQTVGANMKKFYSGVVPEFLIPVDSHVKKEAQAVNEKPKHASDTHTSSVANTTQNPIQEKSCQNQNSLESHAASTSTELDGVASEEAEIDLSVGNECATAICKNSCNVFKENMTREEALVVDKPSTSEDRVSSESCSDKDSKDTMCYSFSDDGKCFSDVSSSQIIRQDDMVGEEQPLAKGSSSFLDNLSTSQLTASINEKMFDTSPDAINCISNVSSSQMVLQRNITREVEPVTDQSISFGDMALSKSLSFSMEESEGNPTMTKLQRPTSVYDTELRTNPEDESISNASITLTNLQDNIISEDRLASKESSFVKDKSLPLTPAFASVIPPSRNDAGFGASIAASKSFLGDVTFVSEESSTTLALEDAPSALQSSELVLSRVMENKSMDVDTGISNCSLLKESSSLSTSSIGNCMQEAESDLSIFTGHSSALPTSLVSANNVVSANPVLSSTLLTDFSEVNASSSHELVGNGRSVQNDLECRIKGLWDFTRGTSVDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23805" stop="23793"/>
                    <exon start="23300" stop="23152"/>
                    <exon start="23070" stop="22870"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNLCGCMNDSSIDLPGMETIDLTDKELPKESCAFIDYKLHHLVSSRPRKYKSYKELIQEAFAPRKRRIKEYEQLAVLYADVDAETSQHVELSQLPSLPSPCLHSTESSTCNICEPEWELL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40439" PGL_stop="40914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40439" e_stop="40914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40439" e_stop="40914" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40439" stop="40914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACATTTACTTAAATAGAAAGAAAAAGGAAATAGTCTCAATGAATACCTAATCTAATTATACGTATTCCAGGTCATATGTACATCTTAAAATATAAATGAAGTGAAAAAGCTCCTAATTCCACACGCTATGGAGCAAAATCCTACAAAGAAATAAATTCAACAGATATAAGGAAGATAGTCGAGGAAATTTGATTTACCATGATGTGTTTGACTCAGCTTTTACGATCATCTATTGTAGTAAAAGTCATTGTTCCATGTGTCGCTGTTGTGTTCGCAGATGAAGAAGAATCAACTTGTTTACCCGAGCCAGCAGATAGCGTGTCTGATGATGTATTTTTCTGATTCCTGAGACTTACTAGATCGGATAACATGCCTGGCTCAGATATCTCTTCATCATTCACTTGCATCTCACCAGTCAGCAATTTCACCACAGTGGACATCGATGGTCGGCTTTTGGGCATGACTTGGGTGCAT</gDNA_template>
            <first_frame> R  H  L  L  K  *  K  E  K  G  N  S  L  N  E  Y  L  I  *  L  Y  V  F  Q  V  I  C  T  S  *  N  I  N  E  V  K  K  L  L  I  P  H  A  M  E  Q  N  P  T  K  K  *  I  Q  Q  I  *  G  R  *  S  R  K  F  D  L  P  *  C  V  *  L  S  F  Y  D  H  L  L  *  *  K  S  L  F  H  V  S  L  L  C  S  Q  M  K  K  N  Q  L  V  Y  P  S  Q  Q  I  A  C  L  M  M  Y  F  S  D  S  *  D  L  L  D  R  I  T  C  L  A  Q  I  S  L  H  H  S  L  A  S  H  Q  S  A  I  S  P  Q  W  T  S  M  V  G  F  W  A  *  L  G  C   </first_frame>
            <second_frame>  D  I  Y  L  N  R  K  K  K  E  I  V  S  M  N  T  *  S  N  Y  T  Y  S  R  S  Y  V  H  L  K  I  *  M  K  *  K  S  S  *  F  H  T  L  W  S  K  I  L  Q  R  N  K  F  N  R  Y  K  E  D  S  R  G  N  L  I  Y  H  D  V  F  D  S  A  F  T  I  I  Y  C  S  K  S  H  C  S  M  C  R  C  C  V  R  R  *  R  R  I  N  L  F  T  R  A  S  R  *  R  V  *  *  C  I  F  L  I  P  E  T  Y  *  I  G  *  H  A  W  L  R  Y  L  F  I  I  H  L  H  L  T  S  Q  Q  F  H  H  S  G  H  R  W  S  A  F  G  H  D  L  G  A  </second_frame>
            <third_frame>   T  F  T  *  I  E  R  K  R  K  *  S  Q  *  I  P  N  L  I  I  R  I  P  G  H  M  Y  I  L  K  Y  K  *  S  E  K  A  P  N  S  T  R  Y  G  A  K  S  Y  K  E  I  N  S  T  D  I  R  K  I  V  E  E  I  *  F  T  M  M  C  L  T  Q  L  L  R  S  S  I  V  V  K  V  I  V  P  C  V  A  V  V  F  A  D  E  E  E  S  T  C  L  P  E  P  A  D  S  V  S  D  D  V  F  F  *  F  L  R  L  T  R  S  D  N  M  P  G  S  D  I  S  S  S  F  T  C  I  S  P  V  S  N  F  T  T  V  D  I  D  G  R  L  L  G  M  T  W  V  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0308M01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44499" PGL_stop="41773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44499" e_stop="44447"/>
            <exon e_start="43489" e_stop="43345"/>
            <exon e_start="42912" e_stop="42797"/>
            <exon e_start="42715" e_stop="42505"/>
            <exon e_start="42414" e_stop="42177"/>
            <exon e_start="41845" e_stop="41773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44499" e_stop="44447" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44446" i_stop="43490" i_length="957"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43489" e_stop="43345" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="43344" i_stop="42913" i_length="432"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42912" e_stop="42797" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="42796" i_stop="42716" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42715" e_stop="42505" e_length="211"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42504" i_stop="42415" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42414" e_stop="42177" e_length="238"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42176" i_stop="41846" i_length="331"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41845" e_stop="41773" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44499" stop="44447"/>
              <exon start="43489" stop="43345"/>
              <exon start="42912" stop="42797"/>
              <exon start="42715" stop="42505"/>
              <exon start="42414" stop="42177"/>
              <exon start="41845" stop="41773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCTCTCCCAAAGTCATCTCTTCCATTTTCTTCTGCTGCCTGCTTCAACAA : GATTGGCAGGGGAGTTCTTTTTTCTGTGGGTTGACCTGCTTTTCTTTCTGTTGAAACAAAAACACTGGTGTAATGACTTGTTTTGGTCTCTGCTTAGGAGGGAAGGCATCTCCCCGTCACAACCATGTAGTAGAAATTGATGAAG : AAATTTCAACCATTGAGAATGCAAGGGTGTACAGCTACCGGGAATTGCGTGCTGCAACCGAAGATTTTTGCCCTGTAAACAAAATAGGGAAAGGAGGGTTTGGTTCTGTCTACAAG : GGGAGGCTAAGAGATGGAAAAATGGCTGCTATTAAGGTACTTTCTGTTGAATCAAAACAAGGTGTAAAGGAGTTTTTGACAGAAATAAAGGTGATCTCAAATATAGAACATGAAAACCTGGTGAAGTTGTATGGTTGTTGTGCGGAAGGGGATCATAGAATATTGGTGTATAACTACCTGGAAAATAATAGTCTTTCCCAAACTCTGCTTG : GTGGTGCACATAGTAGCCTCCAGTTTAGCTGGATAACACGAACTAAGATATGCATTGGTGTTGCACGAGGACTTGCATTCCTCCACGAAGAAGTCCAGCCTTATATAGTTCATAGAGACATTAAAGCAAGTAACATACTTCTCGACAAAGACCTTACCCCAAAAATTTCAGATTTTGGTCTTGCTAAGCTTATTCCAGCTGATTTGACCCATGTTAGCACCCGTGTGGCAGGAACACT : AGGTTATTTGGCCCCTGAATATGCAATGAGAGGGCAGTTGACACGGAAAGCAGATGTATACAGTTTTGGGATT</gDNA_template>
            <first_frame> S  S  L  P  K  S  S  L  P  F  S  S  A  A  C  F  N  K :   I  G  R  G  V  L  F  S  V  G  *  P  A  F  L  S  V  E  T  K  T  L  V  *  *  L  V  L  V  S  A  *  E  G  R  H  L  P  V  T  T  M  *  *  K  L  M  K  :  K  F  Q  P  L  R  M  Q  G  C  T  A  T  G  N  C  V  L  Q  P  K  I  F  A  L  *  T  K  *  G  K  E  G  L  V  L  S  T  R :   G  G  *  E  M  E  K  W  L  L  L  R  Y  F  L  L  N  Q  N  K  V  *  R  S  F  *  Q  K  *  R  *  S  Q  I  *  N  M  K  T  W  *  S  C  M  V  V  V  R  K  G  I  I  E  Y  W  C  I  T  T  W  K  I  I  V  F  P  K  L  C  L  :  V  V  H  I  V  A  S  S  L  A  G  *  H  E  L  R  Y  A  L  V  L  H  E  D  L  H  S  S  T  K  K  S  S  L  I  *  F  I  E  T  L  K  Q  V  T  Y  F  S  T  K  T  L  P  Q  K  F  Q  I  L  V  L  L  S  L  F  Q  L  I  *  P  M  L  A  P  V  W  Q  E  H   : *  V  I  W  P  L  N  M  Q  *  E  G  S  *  H  G  K  Q  M  Y  T  V  L  G   </first_frame>
            <second_frame>  H  L  S  Q  S  H  L  F  H  F  L  L  L  P  A  S  T   : R  L  A  G  E  F  F  F  L  W  V  D  L  L  F  F  L  L  K  Q  K  H  W  C  N  D  L  F  W  S  L  L  R  R  E  G  I  S  P  S  Q  P  C  S  R  N  *  *  R :   N  F  N  H  *  E  C  K  G  V  Q  L  P  G  I  A  C  C  N  R  R  F  L  P  C  K  Q  N  R  E  R  R  V  W  F  C  L  Q   : G  E  A  K  R  W  K  N  G  C  Y  *  G  T  F  C  *  I  K  T  R  C  K  G  V  F  D  R  N  K  G  D  L  K  Y  R  T  *  K  P  G  E  V  V  W  L  L  C  G  R  G  S  *  N  I  G  V  *  L  P  G  K  *  *  S  F  P  N  S  A  W :   W  C  T  *  *  P  P  V  *  L  D  N  T  N  *  D  M  H  W  C  C  T  R  T  C  I  P  P  R  R  S  P  A  L  Y  S  S  *  R  H  *  S  K  *  H  T  S  R  Q  R  P  Y  P  K  N  F  R  F  W  S  C  *  A  Y  S  S  *  F  D  P  C  *  H  P  C  G  R  N  T  :  R  L  F  G  P  *  I  C  N  E  R  A  V  D  T  E  S  R  C  I  Q  F  W  D  </second_frame>
            <third_frame>   I  S  P  K  V  I  S  S  I  F  F  C  C  L  L  Q  Q  :  D  W  Q  G  S  S  F  F  C  G  L  T  C  F  S  F  C  *  N  K  N  T  G  V  M  T  C  F  G  L  C  L  G  G  K  A  S  P  R  H  N  H  V  V  E  I  D  E   : E  I  S  T  I  E  N  A  R  V  Y  S  Y  R  E  L  R  A  A  T  E  D  F  C  P  V  N  K  I  G  K  G  G  F  G  S  V  Y  K  :  G  R  L  R  D  G  K  M  A  A  I  K  V  L  S  V  E  S  K  Q  G  V  K  E  F  L  T  E  I  K  V  I  S  N  I  E  H  E  N  L  V  K  L  Y  G  C  C  A  E  G  D  H  R  I  L  V  Y  N  Y  L  E  N  N  S  L  S  Q  T  L  L   : G  G  A  H  S  S  L  Q  F  S  W  I  T  R  T  K  I  C  I  G  V  A  R  G  L  A  F  L  H  E  E  V  Q  P  Y  I  V  H  R  D  I  K  A  S  N  I  L  L  D  K  D  L  T  P  K  I  S  D  F  G  L  A  K  L  I  P  A  D  L  T  H  V  S  T  R  V  A  G  T  L :   G  Y  L  A  P  E  Y  A  M  R  G  Q  L  T  R  K  A  D  V  Y  S  F  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43435" stop="43345"/>
                    <exon start="42912" stop="42797"/>
                    <exon start="42715" stop="42505"/>
                    <exon start="42414" stop="42177"/>
                    <exon start="41845" stop="41773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKNTGVMTCFGLCLGGKASPRHNHVVEIDEEISTIENARVYSYRELRAATEDFCPVNKIGKGGFGSVYKGRLRDGKMAAIKVLSVESKQGVKEFLTEIKVISNIEHENLVKLYGCCAEGDHRILVYNYLENNSLSQTLLGGAHSSLQFSWITRTKICIGVARGLAFLHEEVQPYIVHRDIKASNILLDKDLTPKISDFGLAKLIPADLTHVSTRVAGTLGYLAPEYAMRGQLTRKADVYSFGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43489" e_stop="42797"/>
            <exon e_start="42715" e_stop="42592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="43489" e_stop="42797" e_length="693"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="42796" i_stop="42716" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42715" e_stop="42592" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43489" stop="42797"/>
              <exon start="42715" stop="42592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGGCAGGGGAGTTCTTTTTTCTGTGGGTTGACCTGCTTTTCTTTCTGTTGAAACAAAAACACTGGTGTAATGACTTGTTTTGGTCTCTGCTTAGGAGGGAAGGCATCTCCCCGTCACAACCATGTAGTAGAAATTGATGAAGGTTAAAATTTTCAGCGTTTTCTCAACTTTTACTTCTCTTTATGTAAATTGTTGCCAGCTTCTATGATAATATAGCATACTTGAGCATGTTGTCACAATTAGGATTCTTTGTTCTTCTTAAGCATGGACAGACATTGCCTTTTCCATACATGATTTCTCCATAGCGATCCAAGTTGTTGTGGTCTAGTGGTGTGGAGGAGAACCACAAGGTCTCATGTTTAAATTCCAATTGAGGCCAAAAATCACTAGGTGCCACCATCTTCTTATCTGCCTCGTTGGTGGGCAGAGTCATCTGGTACCTGTGTTGGTGGGAGGTAGCAGGTACTCGGTGGAATAATCGAGGTGCAGAGTACCACCTTCATATAAATGATTTAAGTTGTTGCAATTAATCAAGACATGTTAAGGTTTGTCACTATATTTAGAATTGTTGCAGAAATTTCAACCATTGAGAATGCAAGGGTGTACAGCTACCGGGAATTGCGTGCTGCAACCGAAGATTTTTGCCCTGTAAACAAAATAGGGAAAGGAGGGTTTGGTTCTGTCTACAAG : GGGAGGCTAAGAGATGGAAAAATGGCTGCTATTAAGGTACTTTCTGTTGAATCAAAACAAGGTGTAAAGGAGTTTTTGACAGAAATAAAGGTGATCTCAAATATAGAACATGAAAACCTGGTGA</gDNA_template>
            <first_frame> D  W  Q  G  S  S  F  F  C  G  L  T  C  F  S  F  C  *  N  K  N  T  G  V  M  T  C  F  G  L  C  L  G  G  K  A  S  P  R  H  N  H  V  V  E  I  D  E  G  *  N  F  Q  R  F  L  N  F  Y  F  S  L  C  K  L  L  P  A  S  M  I  I  *  H  T  *  A  C  C  H  N  *  D  S  L  F  F  L  S  M  D  R  H  C  L  F  H  T  *  F  L  H  S  D  P  S  C  C  G  L  V  V  W  R  R  T  T  R  S  H  V  *  I  P  I  E  A  K  N  H  *  V  P  P  S  S  Y  L  P  R  W  W  A  E  S  S  G  T  C  V  G  G  R  *  Q  V  L  G  G  I  I  E  V  Q  S  T  T  F  I  *  M  I  *  V  V  A  I  N  Q  D  M  L  R  F  V  T  I  F  R  I  V  A  E  I  S  T  I  E  N  A  R  V  Y  S  Y  R  E  L  R  A  A  T  E  D  F  C  P  V  N  K  I  G  K  G  G  F  G  S  V  Y  K  :  G  R  L  R  D  G  K  M  A  A  I  K  V  L  S  V  E  S  K  Q  G  V  K  E  F  L  T  E  I  K  V  I  S  N  I  E  H  E  N  L  V  </first_frame>
            <second_frame>  I  G  R  G  V  L  F  S  V  G  *  P  A  F  L  S  V  E  T  K  T  L  V  *  *  L  V  L  V  S  A  *  E  G  R  H  L  P  V  T  T  M  *  *  K  L  M  K  V  K  I  F  S  V  F  S  T  F  T  S  L  Y  V  N  C  C  Q  L  L  *  *  Y  S  I  L  E  H  V  V  T  I  R  I  L  C  S  S  *  A  W  T  D  I  A  F  S  I  H  D  F  S  I  A  I  Q  V  V  V  V  *  W  C  G  G  E  P  Q  G  L  M  F  K  F  Q  L  R  P  K  I  T  R  C  H  H  L  L  I  C  L  V  G  G  Q  S  H  L  V  P  V  L  V  G  G  S  R  Y  S  V  E  *  S  R  C  R  V  P  P  S  Y  K  *  F  K  L  L  Q  L  I  K  T  C  *  G  L  S  L  Y  L  E  L  L  Q  K  F  Q  P  L  R  M  Q  G  C  T  A  T  G  N  C  V  L  Q  P  K  I  F  A  L  *  T  K  *  G  K  E  G  L  V  L  S  T  R :   G  G  *  E  M  E  K  W  L  L  L  R  Y  F  L  L  N  Q  N  K  V  *  R  S  F  *  Q  K  *  R  *  S  Q  I  *  N  M  K  T  W  * </second_frame>
            <third_frame>   L  A  G  E  F  F  F  L  W  V  D  L  L  F  F  L  L  K  Q  K  H  W  C  N  D  L  F  W  S  L  L  R  R  E  G  I  S  P  S  Q  P  C  S  R  N  *  *  R  L  K  F  S  A  F  S  Q  L  L  L  L  F  M  *  I  V  A  S  F  Y  D  N  I  A  Y  L  S  M  L  S  Q  L  G  F  F  V  L  L  K  H  G  Q  T  L  P  F  P  Y  M  I  S  P  *  R  S  K  L  L  W  S  S  G  V  E  E  N  H  K  V  S  C  L  N  S  N  *  G  Q  K  S  L  G  A  T  I  F  L  S  A  S  L  V  G  R  V  I  W  Y  L  C  W  W  E  V  A  G  T  R  W  N  N  R  G  A  E  Y  H  L  H  I  N  D  L  S  C  C  N  *  S  R  H  V  K  V  C  H  Y  I  *  N  C  C  R  N  F  N  H  *  E  C  K  G  V  Q  L  P  G  I  A  C  C  N  R  R  F  L  P  C  K  Q  N  R  E  R  R  V  W  F  C  L  Q   : G  E  A  K  R  W  K  N  G  C  Y  *  G  T  F  C  *  I  K  T  R  C  K  G  V  F  D  R  N  K  G  D  L  K  Y  R  T  *  K  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42970" stop="42797"/>
                    <exon start="42715" stop="42593"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVAINQDMLRFVTIFRIVAEISTIENARVYSYRELRAATEDFCPVNKIGKGGFGSVYKGRLRDGKMAAIKVLSVESKQGVKEFLTEIKVISNIEHENLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="54829" PGL_stop="50191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54829" e_stop="54611"/>
            <exon e_start="54520" e_stop="54320"/>
            <exon e_start="53560" e_stop="53411"/>
            <exon e_start="53308" e_stop="53126"/>
            <exon e_start="51890" e_stop="51810"/>
            <exon e_start="51311" e_stop="51111"/>
            <exon e_start="51034" e_stop="50894"/>
            <exon e_start="50582" e_stop="50191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.786" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="54829" e_stop="54611" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54610" i_stop="54521" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54520" e_stop="54320" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.786" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54319" i_stop="53561" i_length="759"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53560" e_stop="53411" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53410" i_stop="53309" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53308" e_stop="53126" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53125" i_stop="51891" i_length="1235"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51890" e_stop="51810" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51809" i_stop="51312" i_length="498"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51311" e_stop="51111" e_length="201"/>
          </exon>
          <intron i_serial="6" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51110" i_stop="51035" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51034" e_stop="50894" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50893" i_stop="50583" i_length="311"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="50582" e_stop="50191" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54829" stop="54611"/>
              <exon start="54520" stop="54320"/>
              <exon start="53560" stop="53411"/>
              <exon start="53308" stop="53126"/>
              <exon start="51890" stop="51810"/>
              <exon start="51311" stop="51111"/>
              <exon start="51034" stop="50894"/>
              <exon start="50582" stop="50191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTAGCCATTTCTATCCTTCTTTTTAGCTCAAACTTATTATAAAAATGGCAGCACCAATTTTGCGACACCTCACTACTCCTTTCCCTGCCTTTGTAAAACTCAACGAAACCCCCAAAATTCAATCATTTTTCACTCTCTCCACTCATCCCAACTCTAGAAAATTCTCTCGAGGAACTTCAATTTCAGTTTCAGCCATGGCTTCCGCTACTAAGAAG : GTATTGGTTCCGATTGCGAATGGAACAGAGCCGATTGAGGCTATAGTGCCGATAGATATACTGCGGAGAGCTGGTGCGGAGGTTATTGTTGCTTCCGTTGGGAATCAGCTTCAGATTGAAGTGATGTATGGAATTAAGATCGTTGCTGATGTTCTAATTACGGATTGTGTAGATACTGAGTTTGACCTTATTTCGCTTCCG : GGAGGGGTACCAGGTGCAGCCAACCTTGGGAACTGCAAAATTTTGGAAAGTATTGTAAAAAAGCAAGCTGAAAATGGAAAGCTATATGCTGCAATATGTGCTGCTCCTGCGATAGCACTTGGATCATGGGGGCTTTTGAAGGGGCTGAAA : GCAACGTGTTATCCATCGTATATGGAGGAACTGTCATCTCATGCCATTGCTGTTGAGTCAAGAGTCCAAAAGGATGCAAAAGTTGTGACAAGTCGTGGACCGGCAACATCCATCGAGTATGCTGTTGCGTTGGTTGAGGAGTTGTATGGAAAAGAGAAGGCTAATGAAGTTTCTGGCCCACTG : GTGATGCGCCCAAATCACAGTGAAGAATTTGCATTTGCGGAGCTTAATTCAGTAAATTGGACCCTCACGAGTAAGCCACGG : ATTCTTGTACCTATTGCAAATGGTTCTGAGGAAATGGAAGCTACTATTATTATTGATGTACTTCGGCGAGCAAACGCTCAAGTAGTTGTGGCATCTATGGAAGATAAATTGGAGATTGTTGCTTCCAGAAAAGTTAAACTAGTTGCAGATGTGCTCCTTGATGAAGCTGCTAAACAGTCTTACGATCTCATTGTCCTACCA : GGCGGTCTTGGTGGTGCCGAAACATTTGCCAAATCAGAAAAGTTGGTTGACATGCTGAAGAAGCAGAGGGAATCAAGCAAACCATATGGAGCAATGTGTGCATCTCCAGCTCTAGTCCTAGAGCCCCATGGGCTTCTCCAG : GGTAAAAAGGCTACTGCCTTTCCAGCCTTGTGCAACAAACTTTCCGATCCAAGTGAAGCAGAAAACAGGGTGGTGGTAGATGGAAATCTCGTTACCAGCAGAGGACCAGGAACTACCATGGAGTTCGCACTGGCCATTGCAGATAAGTTTATTGGGCACAAGGAAACATTAGAGCTAGCAAAGGAGATGATTTTCTAAGTATTTAACTTTTTTGCCGCTATGATCCGTCTTTAGCATCATATACACTTTGCTATATGATGGTGTAAACTTGTAGTATAATAAACTTTGCTATATCACTCTGCACTTACAGCTTTGTTTCGGTGGTTGTTAGTTATCATGTTGTATTGTGGTGGTAGTTTAAATACAAATTATCTTCAGGTAATGACAAAAAA</gDNA_template>
            <first_frame> F  I  S  H  F  Y  P  S  F  *  L  K  L  I  I  K  M  A  A  P  I  L  R  H  L  T  T  P  F  P  A  F  V  K  L  N  E  T  P  K  I  Q  S  F  F  T  L  S  T  H  P  N  S  R  K  F  S  R  G  T  S  I  S  V  S  A  M  A  S  A  T  K  K  :  V  L  V  P  I  A  N  G  T  E  P  I  E  A  I  V  P  I  D  I  L  R  R  A  G  A  E  V  I  V  A  S  V  G  N  Q  L  Q  I  E  V  M  Y  G  I  K  I  V  A  D  V  L  I  T  D  C  V  D  T  E  F  D  L  I  S  L  P  :  G  G  V  P  G  A  A  N  L  G  N  C  K  I  L  E  S  I  V  K  K  Q  A  E  N  G  K  L  Y  A  A  I  C  A  A  P  A  I  A  L  G  S  W  G  L  L  K  G  L  K  :  A  T  C  Y  P  S  Y  M  E  E  L  S  S  H  A  I  A  V  E  S  R  V  Q  K  D  A  K  V  V  T  S  R  G  P  A  T  S  I  E  Y  A  V  A  L  V  E  E  L  Y  G  K  E  K  A  N  E  V  S  G  P  L  :  V  M  R  P  N  H  S  E  E  F  A  F  A  E  L  N  S  V  N  W  T  L  T  S  K  P  R  :  I  L  V  P  I  A  N  G  S  E  E  M  E  A  T  I  I  I  D  V  L  R  R  A  N  A  Q  V  V  V  A  S  M  E  D  K  L  E  I  V  A  S  R  K  V  K  L  V  A  D  V  L  L  D  E  A  A  K  Q  S  Y  D  L  I  V  L  P  :  G  G  L  G  G  A  E  T  F  A  K  S  E  K  L  V  D  M  L  K  K  Q  R  E  S  S  K  P  Y  G  A  M  C  A  S  P  A  L  V  L  E  P  H  G  L  L  Q  :  G  K  K  A  T  A  F  P  A  L  C  N  K  L  S  D  P  S  E  A  E  N  R  V  V  V  D  G  N  L  V  T  S  R  G  P  G  T  T  M  E  F  A  L  A  I  A  D  K  F  I  G  H  K  E  T  L  E  L  A  K  E  M  I  F  *  V  F  N  F  F  A  A  M  I  R  L  *  H  H  I  H  F  A  I  *  W  C  K  L  V  V  *  *  T  L  L  Y  H  S  A  L  T  A  L  F  R  W  L  L  V  I  M  L  Y  C  G  G  S  L  N  T  N  Y  L  Q  V  M  T  K   </first_frame>
            <second_frame>  L  L  A  I  S  I  L  L  F  S  S  N  L  L  *  K  W  Q  H  Q  F  C  D  T  S  L  L  L  S  L  P  L  *  N  S  T  K  P  P  K  F  N  H  F  S  L  S  P  L  I  P  T  L  E  N  S  L  E  E  L  Q  F  Q  F  Q  P  W  L  P  L  L  R  R :   Y  W  F  R  L  R  M  E  Q  S  R  L  R  L  *  C  R  *  I  Y  C  G  E  L  V  R  R  L  L  L  L  P  L  G  I  S  F  R  L  K  *  C  M  E  L  R  S  L  L  M  F  *  L  R  I  V  *  I  L  S  L  T  L  F  R  F  R :   E  G  Y  Q  V  Q  P  T  L  G  T  A  K  F  W  K  V  L  *  K  S  K  L  K  M  E  S  Y  M  L  Q  Y  V  L  L  L  R  *  H  L  D  H  G  G  F  *  R  G  *  K :   Q  R  V  I  H  R  I  W  R  N  C  H  L  M  P  L  L  L  S  Q  E  S  K  R  M  Q  K  L  *  Q  V  V  D  R  Q  H  P  S  S  M  L  L  R  W  L  R  S  C  M  E  K  R  R  L  M  K  F  L  A  H  W :   *  C  A  Q  I  T  V  K  N  L  H  L  R  S  L  I  Q  *  I  G  P  S  R  V  S  H  G :   F  L  Y  L  L  Q  M  V  L  R  K  W  K  L  L  L  L  L  M  Y  F  G  E  Q  T  L  K  *  L  W  H  L  W  K  I  N  W  R  L  L  L  P  E  K  L  N  *  L  Q  M  C  S  L  M  K  L  L  N  S  L  T  I  S  L  S  Y  Q :   A  V  L  V  V  P  K  H  L  P  N  Q  K  S  W  L  T  C  *  R  S  R  G  N  Q  A  N  H  M  E  Q  C  V  H  L  Q  L  *  S  *  S  P  M  G  F  S  R :   V  K  R  L  L  P  F  Q  P  C  A  T  N  F  P  I  Q  V  K  Q  K  T  G  W  W  *  M  E  I  S  L  P  A  E  D  Q  E  L  P  W  S  S  H  W  P  L  Q  I  S  L  L  G  T  R  K  H  *  S  *  Q  R  R  *  F  S  K  Y  L  T  F  L  P  L  *  S  V  F  S  I  I  Y  T  L  L  Y  D  G  V  N  L  *  Y  N  K  L  C  Y  I  T  L  H  L  Q  L  C  F  G  G  C  *  L  S  C  C  I  V  V  V  V  *  I  Q  I  I  F  R  *  *  Q  K  </second_frame>
            <third_frame>   Y  *  P  F  L  S  F  F  L  A  Q  T  Y  Y  K  N  G  S  T  N  F  A  T  P  H  Y  S  F  P  C  L  C  K  T  Q  R  N  P  Q  N  S  I  I  F  H  S  L  H  S  S  Q  L  *  K  I  L  S  R  N  F  N  F  S  F  S  H  G  F  R  Y  *  E   : G  I  G  S  D  C  E  W  N  R  A  D  *  G  Y  S  A  D  R  Y  T  A  E  S  W  C  G  G  Y  C  C  F  R  W  E  S  A  S  D  *  S  D  V  W  N  *  D  R  C  *  C  S  N  Y  G  L  C  R  Y  *  V  *  P  Y  F  A  S   : G  R  G  T  R  C  S  Q  P  W  E  L  Q  N  F  G  K  Y  C  K  K  A  S  *  K  W  K  A  I  C  C  N  M  C  C  S  C  D  S  T  W  I  M  G  A  F  E  G  A  E   : S  N  V  L  S  I  V  Y  G  G  T  V  I  S  C  H  C  C  *  V  K  S  P  K  G  C  K  S  C  D  K  S  W  T  G  N  I  H  R  V  C  C  C  V  G  *  G  V  V  W  K  R  E  G  *  *  S  F  W  P  T   : G  D  A  P  K  S  Q  *  R  I  C  I  C  G  A  *  F  S  K  L  D  P  H  E  *  A  T   : D  S  C  T  Y  C  K  W  F  *  G  N  G  S  Y  Y  Y  Y  *  C  T  S  A  S  K  R  S  S  S  C  G  I  Y  G  R  *  I  G  D  C  C  F  Q  K  S  *  T  S  C  R  C  A  P  *  *  S  C  *  T  V  L  R  S  H  C  P  T   : R  R  S  W  W  C  R  N  I  C  Q  I  R  K  V  G  *  H  A  E  E  A  E  G  I  K  Q  T  I  W  S  N  V  C  I  S  S  S  S  P  R  A  P  W  A  S  P   : G  *  K  G  Y  C  L  S  S  L  V  Q  Q  T  F  R  S  K  *  S  R  K  Q  G  G  G  R  W  K  S  R  Y  Q  Q  R  T  R  N  Y  H  G  V  R  T  G  H  C  R  *  V  Y  W  A  Q  G  N  I  R  A  S  K  G  D  D  F  L  S  I  *  L  F  C  R  Y  D  P  S  L  A  S  Y  T  L  C  Y  M  M  V  *  T  C  S  I  I  N  F  A  I  S  L  C  T  Y  S  F  V  S  V  V  V  S  Y  H  V  V  L  W  W  *  F  K  Y  K  L  S  S  G  N  D  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54799" stop="54611"/>
                    <exon start="54520" stop="54320"/>
                    <exon start="53560" stop="53411"/>
                    <exon start="53308" stop="53126"/>
                    <exon start="51890" stop="51810"/>
                    <exon start="51311" stop="51111"/>
                    <exon start="51034" stop="50894"/>
                    <exon start="50582" stop="50385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLIIKMAAPILRHLTTPFPAFVKLNETPKIQSFFTLSTHPNSRKFSRGTSISVSAMASATKKVLVPIANGTEPIEAIVPIDILRRAGAEVIVASVGNQLQIEVMYGIKIVADVLITDCVDTEFDLISLPGGVPGAANLGNCKILESIVKKQAENGKLYAAICAAPAIALGSWGLLKGLKATCYPSYMEELSSHAIAVESRVQKDAKVVTSRGPATSIEYAVALVEELYGKEKANEVSGPLVMRPNHSEEFAFAELNSVNWTLTSKPRILVPIANGSEEMEATIIIDVLRRANAQVVVASMEDKLEIVASRKVKLVADVLLDEAAKQSYDLIVLPGGLGGAETFAKSEKLVDMLKKQRESSKPYGAMCASPALVLEPHGLLQGKKATAFPALCNKLSDPSEAENRVVVDGNLVTSRGPGTTMEFALAIADKFIGHKETLELAKEMIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64966" PGL_stop="66596"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64966" e_stop="65641"/>
            <exon e_start="66498" e_stop="66596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64966" e_stop="65641" e_length="676"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65642" i_stop="66497" i_length="856"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="66498" e_stop="66596" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64966" stop="65641"/>
              <exon start="66498" stop="66596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTGGAGTTCATGAAGTAATTACAAGCAAACAAAACTCTGGGCCAAAGAAACGTAAGAAATGCCGTCTTAGTGACGATGATCTCTTAATTTCAGCCGTATTTAGAAACACGACATGCAAATCTGGCAACAAAAGGTCCTCTGGTAAAATCAAACCTCTAAGGAAAAGGAAGAACCAGAAAAGTGGTGGTAAGTTGCTTTTACGTAGTCTTATTAAGGGTGGAAAACACTTCCCCGAAGAAAAATGGCCTACCTTTGCCTCAAGGACTGTGTTATCCTGGTTAATTCATTCTGGGGTTGTCTCCCTAAATGAAATGATCCAGTACCAGAACTTGAAGGATGATTCTGTGGTAAAAACCGGCTATATTACCGCTGATGGAATATCGTGTAATTGCTGTGACGAGGTCCTATCCATCTCTAGCTTCAAAAAGCATGCCGGTTTTAAGCACAATCGCCCCTGTTTGAATCTTTTCATGGAGAATGGTAAGCCATTCACCTTATGTCAGCTTGAGGCTTGGTCAGATGAATACAAGGCACGGAGGGCAGTTTCTCAAACTTCCCAAGCTGAGGAAAGGGACCAAAATGATGACAGTTGCGGGCGATGTGGTGATGGAGGCGAACTGATTTGCTGTGACAATTGTCCAGCTACATTTCATCTAGCTTGTTTGTTCACACAG : GAGCTTCCTGAAGGGAGTTGGTACTGTTCACAATGCACGTGCCAGAAATGTGGGGACGTGGTTAGATGTAGTGAATCAAGTTCTCCTGGTGGATATAAA</gDNA_template>
            <first_frame> E  W  S  S  *  S  N  Y  K  Q  T  K  L  W  A  K  E  T  *  E  M  P  S  *  *  R  *  S  L  N  F  S  R  I  *  K  H  D  M  Q  I  W  Q  Q  K  V  L  W  *  N  Q  T  S  K  E  K  E  E  P  E  K  W  W  *  V  A  F  T  *  S  Y  *  G  W  K  T  L  P  R  R  K  M  A  Y  L  C  L  K  D  C  V  I  L  V  N  S  F  W  G  C  L  P  K  *  N  D  P  V  P  E  L  E  G  *  F  C  G  K  N  R  L  Y  Y  R  *  W  N  I  V  *  L  L  *  R  G  P  I  H  L  *  L  Q  K  A  C  R  F  *  A  Q  S  P  L  F  E  S  F  H  G  E  W  *  A  I  H  L  M  S  A  *  G  L  V  R  *  I  Q  G  T  E  G  S  F  S  N  F  P  S  *  G  K  G  P  K  *  *  Q  L  R  A  M  W  *  W  R  R  T  D  L  L  *  Q  L  S  S  Y  I  S  S  S  L  F  V  H  T   : G  A  S  *  R  E  L  V  L  F  T  M  H  V  P  E  M  W  G  R  G  *  M  *  *  I  K  F  S  W  W  I  *  </first_frame>
            <second_frame>  S  G  V  H  E  V  I  T  S  K  Q  N  S  G  P  K  K  R  K  K  C  R  L  S  D  D  D  L  L  I  S  A  V  F  R  N  T  T  C  K  S  G  N  K  R  S  S  G  K  I  K  P  L  R  K  R  K  N  Q  K  S  G  G  K  L  L  L  R  S  L  I  K  G  G  K  H  F  P  E  E  K  W  P  T  F  A  S  R  T  V  L  S  W  L  I  H  S  G  V  V  S  L  N  E  M  I  Q  Y  Q  N  L  K  D  D  S  V  V  K  T  G  Y  I  T  A  D  G  I  S  C  N  C  C  D  E  V  L  S  I  S  S  F  K  K  H  A  G  F  K  H  N  R  P  C  L  N  L  F  M  E  N  G  K  P  F  T  L  C  Q  L  E  A  W  S  D  E  Y  K  A  R  R  A  V  S  Q  T  S  Q  A  E  E  R  D  Q  N  D  D  S  C  G  R  C  G  D  G  G  E  L  I  C  C  D  N  C  P  A  T  F  H  L  A  C  L  F  T  Q  :  E  L  P  E  G  S  W  Y  C  S  Q  C  T  C  Q  K  C  G  D  V  V  R  C  S  E  S  S  S  P  G  G  Y  K </second_frame>
            <third_frame>   V  E  F  M  K  *  L  Q  A  N  K  T  L  G  Q  R  N  V  R  N  A  V  L  V  T  M  I  S  *  F  Q  P  Y  L  E  T  R  H  A  N  L  A  T  K  G  P  L  V  K  S  N  L  *  G  K  G  R  T  R  K  V  V  V  S  C  F  Y  V  V  L  L  R  V  E  N  T  S  P  K  K  N  G  L  P  L  P  Q  G  L  C  Y  P  G  *  F  I  L  G  L  S  P  *  M  K  *  S  S  T  R  T  *  R  M  I  L  W  *  K  P  A  I  L  P  L  M  E  Y  R  V  I  A  V  T  R  S  Y  P  S  L  A  S  K  S  M  P  V  L  S  T  I  A  P  V  *  I  F  S  W  R  M  V  S  H  S  P  Y  V  S  L  R  L  G  Q  M  N  T  R  H  G  G  Q  F  L  K  L  P  K  L  R  K  G  T  K  M  M  T  V  A  G  D  V  V  M  E  A  N  *  F  A  V  T  I  V  Q  L  H  F  I  *  L  V  C  S  H  R :   S  F  L  K  G  V  G  T  V  H  N  A  R  A  R  N  V  G  T  W  L  D  V  V  N  Q  V  L  L  V  D  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64967" stop="65641"/>
                    <exon start="66498" stop="66596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVHEVITSKQNSGPKKRKKCRLSDDDLLISAVFRNTTCKSGNKRSSGKIKPLRKRKNQKSGGKLLLRSLIKGGKHFPEEKWPTFASRTVLSWLIHSGVVSLNEMIQYQNLKDDSVVKTGYITADGISCNCCDEVLSISSFKKHAGFKHNRPCLNLFMENGKPFTLCQLEAWSDEYKARRAVSQTSQAEERDQNDDSCGRCGDGGELICCDNCPATFHLACLFTQELPEGSWYCSQCTCQKCGDVVRCSESSSPGGYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="70942" PGL_stop="71307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70942" e_stop="71307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="70942" e_stop="71307" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70942" stop="71307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGACCGGCATGGCTAGTAAGTCATCGAAGACTGACGTTTTAGGTTCTGGAACGGGTTATTACGGTCACGGAAGTATAATGCGTGGAGGTACCGGTGTAAAACCTGGTGGCGGTGCTGTCGGTGGGGTTGACGCCGGTGCTACACAGACGGCGAATTTGAGAGGGGTAATGGCTGGAGACACAATGAAAAGAGGAATGTTGAATACTGATCCAGAGGAGTTGAAGAGATTAGGAAATGAGAATTACAAAAAGGGTTATTTCGTTGAAGCTTTAAATCTGTATGATAAAGCTATAGCTATTTCTCCAGGCAATGCTGCTTACCATTGTAACCGGGCGGCTGCGCTGATCGGTCTGAAGCGGTTAC</gDNA_template>
            <first_frame> *  R  P  A  W  L  V  S  H  R  R  L  T  F  *  V  L  E  R  V  I  T  V  T  E  V  *  C  V  E  V  P  V  *  N  L  V  A  V  L  S  V  G  L  T  P  V  L  H  R  R  R  I  *  E  G  *  W  L  E  T  Q  *  K  E  E  C  *  I  L  I  Q  R  S  *  R  D  *  E  M  R  I  T  K  R  V  I  S  L  K  L  *  I  C  M  I  K  L  *  L  F  L  Q  A  M  L  L  T  I  V  T  G  R  L  R  *  S  V  *  S  G  Y </first_frame>
            <second_frame>  E  D  R  H  G  *  *  V  I  E  D  *  R  F  R  F  W  N  G  L  L  R  S  R  K  Y  N  A  W  R  Y  R  C  K  T  W  W  R  C  C  R  W  G  *  R  R  C  Y  T  D  G  E  F  E  R  G  N  G  W  R  H  N  E  K  R  N  V  E  Y  *  S  R  G  V  E  E  I  R  K  *  E  L  Q  K  G  L  F  R  *  S  F  K  S  V  *  *  S  Y  S  Y  F  S  R  Q  C  C  L  P  L  *  P  G  G  C  A  D  R  S  E  A  V   </second_frame>
            <third_frame>   K  T  G  M  A  S  K  S  S  K  T  D  V  L  G  S  G  T  G  Y  Y  G  H  G  S  I  M  R  G  G  T  G  V  K  P  G  G  G  A  V  G  G  V  D  A  G  A  T  Q  T  A  N  L  R  G  V  M  A  G  D  T  M  K  R  G  M  L  N  T  D  P  E  E  L  K  R  L  G  N  E  N  Y  K  K  G  Y  F  V  E  A  L  N  L  Y  D  K  A  I  A  I  S  P  G  N  A  A  Y  H  C  N  R  A  A  A  L  I  G  L  K  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70944" stop="71306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTGMASKSSKTDVLGSGTGYYGHGSIMRGGTGVKPGGGAVGGVDAGATQTANLRGVMAGDTMKRGMLNTDPEELKRLGNENYKKGYFVEALNLYDKAIAISPGNAAYHCNRAAALIGLKRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="72435" PGL_stop="74247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72435" e_stop="72470"/>
            <exon e_start="72561" e_stop="72745"/>
            <exon e_start="72822" e_stop="73155"/>
            <exon e_start="73275" e_stop="73479"/>
            <exon e_start="73567" e_stop="73673"/>
            <exon e_start="73759" e_stop="74247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.431" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.997"/>
          <exon-intron don_prob="0.023" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="1.000" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72435" e_stop="72470" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="72471" i_stop="72560" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72561" e_stop="72745" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.431" acc_prob="0.981">
            <gDNA_intron_boundary i_start="72746" i_stop="72821" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="72822" e_stop="73155" e_length="334"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="73156" i_stop="73274" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73275" e_stop="73479" e_length="205"/>
          </exon>
          <intron i_serial="4" don_prob="0.023" acc_prob="0.987">
            <gDNA_intron_boundary i_start="73480" i_stop="73566" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="73567" e_stop="73673" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.928" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73674" i_stop="73758" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73759" e_stop="74247" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72435" stop="72470"/>
              <exon start="72561" stop="72745"/>
              <exon start="72822" stop="73155"/>
              <exon start="73275" stop="73479"/>
              <exon start="73567" stop="73673"/>
              <exon start="73759" stop="74247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGCCATTGCTTCTGGAGCAGATGCGTCTCCTCAG : TTATTTGCTTGTAGAGCAGAAGCTCTTTTGAAGCTACATCAAGTAGAGGATGCAGAGTTGAGCTTATCAATTACTCGGAAGCATGAACCATCTACTGGTGGATCACCAGAGTCAAAAATTTTTGGGATGCTTTCAGAGGCATATGTGTTCTTTGTTCAAGCTCAGATTGACCTGGCTATGGGAAG : GTTTGAAAGTGCAATCAGTTCAGTAGAGAGAGCTGGACATATTGATCCTCGAAATATTGAAGTATCAGTTTTTCTCAACAATACAAGGTCGGTGGGACGGGCTCGTACCCGTGGCAATGATCTATTTAAATCCGAAAGGTATACTGAAGCATGTGCTGCTTATGGGGAAGGTCTCAGGCGTGATTCGTCAAATTCAGTTCTCTATTGTAATAGAGCAGCTTGCTGGTATAAACTCGGGCAGTGGGAAAAAGCTGTGGATGACTGCAATCGAGCGCTCACTTTCCAGCCACACTACACTAAAGCCCTTCTTCGAAGGGCTGCCTCAAATACCAAG : CTTGAGAGATGGGCTGAAGCTGTTAGAGATTATGAGGTTTTGAGGAAAGCGCTTCCATATGACACCGAGGTTGCTGAATCGTTATTCCATGCTCAAGTTGCATTAAAGAAATCACGCGGAGAAGACATTCACAATATGAAATTTGGTGGGGAGGTGGAATTAGTTTCTGGTCTCGAGCAGTTTCAAGCTGCGATTTCATCGCCTT : GTGCATCTGTGGTCCATTTCAAAGCAGCATCTAACCTACAATGCAAGCAGATATCCCCTTTCTTGGATACTTTAACCACCAAGTATCCTTCCATAAATTTTCTTAAG : GTTGATGTGGAAGAGAGCCCGTCAATTGCTAATGCAGAGAATGTTAGAATCGTACCAACATTCAAGATTTACAAAAAGGGAAGCCGCGTGAAGGAGATGATCTGCCCAAGTCAAGAGGTGTTAGAATCATCGGTGAGGCATTACAGTATTTAAGTGCCATGATTGCAATGTCATCGTGCTTCTTCGTGTTCTCTCATCATTCCAATCACCCGGTATTCTTGCCGTTTACCTATGACAAAATTGAGCTACTACTACTACTACATAATAACAATCTCATTAAGGAGCCAATGCAGCCAAATGCCAGCAACCTTCAGAGGGATTAGTTTAGTCTCCTTTTTTCCCTTTTAATTTTATTCATTCATTGCTGTCTTGGTTCCTACTTCTTCCCACCTCCACATTAATCTTTCTCTTTTCATATCACTTATTCTTATTATATGAAAAAAAAAAATTAAAAAAATTAGGTTACATTTCCCTAGTATAAAACTTGAG</gDNA_template>
            <first_frame> A  A  I  A  S  G  A  D  A  S  P  Q  :  L  F  A  C  R  A  E  A  L  L  K  L  H  Q  V  E  D  A  E  L  S  L  S  I  T  R  K  H  E  P  S  T  G  G  S  P  E  S  K  I  F  G  M  L  S  E  A  Y  V  F  F  V  Q  A  Q  I  D  L  A  M  G  R :   F  E  S  A  I  S  S  V  E  R  A  G  H  I  D  P  R  N  I  E  V  S  V  F  L  N  N  T  R  S  V  G  R  A  R  T  R  G  N  D  L  F  K  S  E  R  Y  T  E  A  C  A  A  Y  G  E  G  L  R  R  D  S  S  N  S  V  L  Y  C  N  R  A  A  C  W  Y  K  L  G  Q  W  E  K  A  V  D  D  C  N  R  A  L  T  F  Q  P  H  Y  T  K  A  L  L  R  R  A  A  S  N  T  K  :  L  E  R  W  A  E  A  V  R  D  Y  E  V  L  R  K  A  L  P  Y  D  T  E  V  A  E  S  L  F  H  A  Q  V  A  L  K  K  S  R  G  E  D  I  H  N  M  K  F  G  G  E  V  E  L  V  S  G  L  E  Q  F  Q  A  A  I  S  S  P   : C  A  S  V  V  H  F  K  A  A  S  N  L  Q  C  K  Q  I  S  P  F  L  D  T  L  T  T  K  Y  P  S  I  N  F  L  K  :  V  D  V  E  E  S  P  S  I  A  N  A  E  N  V  R  I  V  P  T  F  K  I  Y  K  K  G  S  R  V  K  E  M  I  C  P  S  Q  E  V  L  E  S  S  V  R  H  Y  S  I  *  V  P  *  L  Q  C  H  R  A  S  S  C  S  L  I  I  P  I  T  R  Y  S  C  R  L  P  M  T  K  L  S  Y  Y  Y  Y  Y  I  I  T  I  S  L  R  S  Q  C  S  Q  M  P  A  T  F  R  G  I  S  L  V  S  F  F  P  F  *  F  Y  S  F  I  A  V  L  V  P  T  S  S  H  L  H  I  N  L  S  L  F  I  S  L  I  L  I  I  *  K  K  K  I  K  K  I  R  L  H  F  P  S  I  K  L  E </first_frame>
            <second_frame>  Q  P  L  L  L  E  Q  M  R  L  L  S :   Y  L  L  V  E  Q  K  L  F  *  S  Y  I  K  *  R  M  Q  S  *  A  Y  Q  L  L  G  S  M  N  H  L  L  V  D  H  Q  S  Q  K  F  L  G  C  F  Q  R  H  M  C  S  L  F  K  L  R  L  T  W  L  W  E   : G  L  K  V  Q  S  V  Q  *  R  E  L  D  I  L  I  L  E  I  L  K  Y  Q  F  F  S  T  I  Q  G  R  W  D  G  L  V  P  V  A  M  I  Y  L  N  P  K  G  I  L  K  H  V  L  L  M  G  K  V  S  G  V  I  R  Q  I  Q  F  S  I  V  I  E  Q  L  A  G  I  N  S  G  S  G  K  K  L  W  M  T  A  I  E  R  S  L  S  S  H  T  T  L  K  P  F  F  E  G  L  P  Q  I  P  S :   L  R  D  G  L  K  L  L  E  I  M  R  F  *  G  K  R  F  H  M  T  P  R  L  L  N  R  Y  S  M  L  K  L  H  *  R  N  H  A  E  K  T  F  T  I  *  N  L  V  G  R  W  N  *  F  L  V  S  S  S  F  K  L  R  F  H  R  L  :  V  H  L  W  S  I  S  K  Q  H  L  T  Y  N  A  S  R  Y  P  L  S  W  I  L  *  P  P  S  I  L  P  *  I  F  L  R :   L  M  W  K  R  A  R  Q  L  L  M  Q  R  M  L  E  S  Y  Q  H  S  R  F  T  K  R  E  A  A  *  R  R  *  S  A  Q  V  K  R  C  *  N  H  R  *  G  I  T  V  F  K  C  H  D  C  N  V  I  V  L  L  R  V  L  S  S  F  Q  S  P  G  I  L  A  V  Y  L  *  Q  N  *  A  T  T  T  T  T  *  *  Q  S  H  *  G  A  N  A  A  K  C  Q  Q  P  S  E  G  L  V  *  S  P  F  F  P  F  N  F  I  H  S  L  L  S  W  F  L  L  L  P  T  S  T  L  I  F  L  F  S  Y  H  L  F  L  L  Y  E  K  K  K  L  K  K  L  G  Y  I  S  L  V  *  N  L   </second_frame>
            <third_frame>   S  H  C  F  W  S  R  C  V  S  S   : V  I  C  L  *  S  R  S  S  F  E  A  T  S  S  R  G  C  R  V  E  L  I  N  Y  S  E  A  *  T  I  Y  W  W  I  T  R  V  K  N  F  W  D  A  F  R  G  I  C  V  L  C  S  S  S  D  *  P  G  Y  G  K  :  V  *  K  C  N  Q  F  S  R  E  S  W  T  Y  *  S  S  K  Y  *  S  I  S  F  S  Q  Q  Y  K  V  G  G  T  G  S  Y  P  W  Q  *  S  I  *  I  R  K  V  Y  *  S  M  C  C  L  W  G  R  S  Q  A  *  F  V  K  F  S  S  L  L  *  *  S  S  L  L  V  *  T  R  A  V  G  K  S  C  G  *  L  Q  S  S  A  H  F  P  A  T  L  H  *  S  P  S  S  K  G  C  L  K  Y  Q   : A  *  E  M  G  *  S  C  *  R  L  *  G  F  E  E  S  A  S  I  *  H  R  G  C  *  I  V  I  P  C  S  S  C  I  K  E  I  T  R  R  R  H  S  Q  Y  E  I  W  W  G  G  G  I  S  F  W  S  R  A  V  S  S  C  D  F  I  A  L :   C  I  C  G  P  F  Q  S  S  I  *  P  T  M  Q  A  D  I  P  F  L  G  Y  F  N  H  Q  V  S  F  H  K  F  S  *   : G  *  C  G  R  E  P  V  N  C  *  C  R  E  C  *  N  R  T  N  I  Q  D  L  Q  K  G  K  P  R  E  G  D  D  L  P  K  S  R  G  V  R  I  I  G  E  A  L  Q  Y  L  S  A  M  I  A  M  S  S  C  F  F  V  F  S  H  H  S  N  H  P  V  F  L  P  F  T  Y  D  K  I  E  L  L  L  L  L  H  N  N  N  L  I  K  E  P  M  Q  P  N  A  S  N  L  Q  R  D  *  F  S  L  L  F  S  L  L  I  L  F  I  H  C  C  L  G  S  Y  F  F  P  P  P  H  *  S  F  S  F  H  I  T  Y  S  Y  Y  M  K  K  K  N  *  K  N  *  V  T  F  P  *  Y  K  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0308M01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72435" stop="72470"/>
                    <exon start="72561" stop="72745"/>
                    <exon start="72822" stop="73155"/>
                    <exon start="73275" stop="73479"/>
                    <exon start="73567" stop="73673"/>
                    <exon start="73759" stop="73911"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAIASGADASPQLFACRAEALLKLHQVEDAELSLSITRKHEPSTGGSPESKIFGMLSEAYVFFVQAQIDLAMGRFESAISSVERAGHIDPRNIEVSVFLNNTRSVGRARTRGNDLFKSERYTEACAAYGEGLRRDSSNSVLYCNRAACWYKLGQWEKAVDDCNRALTFQPHYTKALLRRAASNTKLERWAEAVRDYEVLRKALPYDTEVAESLFHAQVALKKSRGEDIHNMKFGGEVELVSGLEQFQAAISSPCASVVHFKAASNLQCKQISPFLDTLTTKYPSINFLKVDVEESPSIANAENVRIVPTFKIYKKGSRVKEMICPSQEVLESSVRHYSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 23 chains have been computed
$ 
$ memory statistics:
$ 30424 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2028 bytes was the average size of a spliced alignment
$ 18928 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1720 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 28 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 09:38:16
-->
