<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 00:12:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0099J13-9vrl3/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-8Or8Bn/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8Or8Bn/sgn_marker_seqs" ref_id="SGN-M3124" ref_strand="+" ref_description="SGN-M3124 cLET-6-N21 [est_clones]">
      <seq>ctgttcctgccattccatctccaccacccctaccttcatctggacagtcaaatatagctgctaccggattcggatcgcctcccaatacccttaccgaacccgtttgggataccgtcaaaagagatctgtccagaattgttagtaatttgaagctggtggttttccctaatccttatagagaagatcctggcaaagctcttcgtgattgggatctatggggacctttcttcttcattgttttccttggtctcactttgtcatggtctgcttctgttaagaagtctgaggtttttgctgttgcatttgctctgctggctgccggtgctgtcattctgacactgaatgtattgttactgggcggtcatataatcttcttccaaagtctcagtctgctgggttactgtctattcccgcttgatattggtgctttcatttgcatgctaaaggacaacgtgatattgaaggtagttgtagtatgtgttgcactagcttggagctcttgggcggcataccccttcatgagtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0099J13-9vrl3/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0099J13.1" temp_strand="-" temp_description="C07SLe0099J13.1  AC210368.1 htgs_phase:3 submitted_to_sgn_as:C07SLe0099J13 upload_account_name:france">
        <position start="10262" stop="5217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9962" g_stop="9682" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9681" i_stop="6144" i_length="3538">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6143" g_stop="6069" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="356" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6068" i_stop="5688" i_length="381">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5687" g_stop="5517" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="527" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0099J13.1" gen_strand="-" ref_id="SGN-M3124" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0099J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9962" e_stop="9682"/>
          <exon e_start="6143" e_stop="6069"/>
          <exon e_start="5687" e_stop="5517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCCTGCCATTCCATCTCCACCACCCCTACCTTCATCTGGACAGTCAAATATAGCTGCTACCGGATTCGGATCGCCTCCCAATACCCTTACCGAACCCGTTTGGGATACCGTCAAAAGAGATCTGTCCAGAATTGTTAGTAATTTGAAGCTGGTGGTTTTCCCTAATCCTTATAGAGAAGATCCTGGCAAAGCTCTTCGTGATTGGGATCTATGGGGACCTTTCTTCTTCATTGTTTTCCTTGGTCTCACTTTGTCATGGTCTGCTTCTGTTAAGAAGGTAACTCCCATTTACTATTTCATTGTTCAAACTATTGGTGGAGTCTAATTTACTTTCGTCTTGTGTTAGAAGGTACTGAGTTCTGAAAATGTTTTAGAAGCATTTCTTTTTGTGATTGTGCATGTTTTGTAGTTTTGATGTATAATTCTAAGTAACACTGCCACAAGGGGCACTCAATTAGATCAAGTAATAGCTGAAAAGAAAGGATAATGCTTTGGAAATTACAAGTGCCGGGGGAACAAATGAACAATCAAGAATTTTATGTATTGGCAAACAGCTCGATCAAAATTTGCAGATGTCAAAAAGATAACTTGTCATACCACCAAACAAAAGGATTATGGTGTTTGTTTCAATATCAGATGCACAACTTATTCGAAGGAAAAATGAGAAATCTGTGATTACTTTTCTCCCCTATATAAATTGTTTATGAAATGGACTTTGGACCTAAACAACCCCAGATTAACTCATGAGGGAAGGATTGTCCCATACAAGAGGTAACAATCCCATTTTCATTATCAATAGGTCACTAGTAACACTCTCTCACCAGCCTAAGATTGGACATCTATGGCATGGAAAACATAACATGATGGCCCAGTATTGGGTAAACCAAGAAAGAGGATGAGTCTAGCTTTAATACCATATGATCTTCACCCAATCCAACCCAAAAGCTAGCTTATGAGGGATGATTGCCTATGATCATAAAAGGAGAGCACACCCTATTCCCTCAATTAATATAGGACTTAATAGTTTACACTCCCCTGTAAGATGAGGAATGGACAACCGGAACGTGTATGACATTACATAGGGCTCCAACATTGAGAAGCACACCAACATGGATCAATGAGTTTTGCTTTGATACCATGGTATGACATGAATCATAAGCTACATTTTTCTTCCCTTTCTTGTTATACAGTATTGGTATGTAATGAGCCTGAATGAATCGGAATTGACCTTAGAGGATTCATTCAGCCAGCCCAACTGATCTGGGATTTGAGGGATTGTTGTTTCTTTTACAAAAAAACCAACAAATATATTTGTAGTTTCTTGCCTGTCCTTCCTCGGTCCAGTTCTCTTTTCTTCTATCTCCACTTCTTTAATGTGCTTACTTCTAAATTGTCTCTCCATTTTACCATGAATCTCAACCATTTTATTTCTTTTACGGCTCCTCACCTAGATCCAGCCCAAAAGACAACTCTTGGAATTGCCTAATTTTCAAATTTTTGCTATCTAGCTGTCTATTTTTATTACAGTTCACATTGTAATCATGTTGGCAGCCCTACTCCTTCCCCTTAAAATCTGATGCTTTCTTGTGGCTATGTCCCATAGACTTGCTAGGGTATAGTTGGCTTGGTGTAAAAATGACTATGAAAACAACACAGTTGAATGGAAATAGTTCTATTTAGTTTGTGCACGGAAGTCCAACATGCCTAGAGTTTATATCTCTGTGGCTATTGGCACAAACTATAAATAAATCATAAATAGAATAATGTTCGCAACGTAAATGAATGTTTACTTCAGTGGATCCAAACAAAAGTATAAACAAGAGACAAAGCTAAGCTCTTTATCATCTTAGTAAGTGCCTTATGATGTTTATAACAGATATAAAATAATCTATATACTCTAATTTACACCAATAACAAAAGTTAAGAATACAATTCATCTTACGTTTTTTTAAGGAACTACAAATATCTTCGAAACACCTAGATTCCTGTTTAGAAAAAAAATAGGTACTAATATGCTCTCAGGCTCGATTAATGAGGTAGTTCCCTAAGATCCTTCTCAGACTTCTGGATACCTTCTCCGGTGTTATTCGATCGCCGAGATCTATTCTTATTCTCCTTTTCCTTCTTTTAAGTCTTTTAATGGCCATGGATAATTTTATTTATTTCAGATTTGTGGGGAAGTCGTTTGACATTATTGAGTCTAAGGCATATGAGTGAGAGATGGTATGAATGTGGAGAAGCACAAACCAGTTATTAACCTGAAAGGAATTGTTGAAATACTTGCTTATCGACCATCAAAATTGTCAACAACAAATTAAAACGTTATAACATAACTTCTTATATCACTCGTCCTGCTAGAAGCCTGCCTTACCCTTATAAGAAATGTAGTAGTAAAGGCATACTTTGACATTGTCGGCTTTAGGATTAATGTGTCCCTACAGCTTTGCATCTCCTTGATTGACTACTTATAAAATTTCTGATTCTATGATCCAAAATAAAGAAGGGATAATACGAACATATAGTGTTGGTGTGCTTGGATCTATAGTTTGGATAAAGAAGTTGCACTCTTACCACTAGACCGAGGTCTCGAGGGCAAGCTGTGTAGACTATTTATTACATCCTTAGCCTAGAAGTGGTGCACTCTTGTTGTTTCCCTCTCATGTACCAACTCTCATTTGTTGTATTGCTGGTCTCGTTAAAGATGGCTCTACTTTCTACCTGACCTTTAGTACTTTGATTTCTTGCTGTTTCATCATCTAAGTCCAGCTCAAGTGAAACCCCTTGGAATTGCCTAGATTTTCAACTTCTACTATCTTTTTTGCCAAATAATTTTCAACTTCTACTATGTAGCTTTCTATTTGCCACTATAGATCACACTGTACTCATATTGATTGTCTCAGGCAGAAAGATGGGTGAATCTTTCTCTGCTGAGCAACTTAAACTAGACATCCTCTTCAATATAGATGTCTTTTTGTGGACATGTGCCATGAACTTGATAGGGTGTCTAGATTATAGTTGCTTGGCTAAGTAATAATAACACAAATCAGAAACAGTTATACGTTTACTTTGTGCACTGAACTCGACCTTGCCTTGAATCGTGACAAGCCACTTGTACCACTCTAAATCTCTAGTGCTACTTTGACAAGTCATCTCATGGTGCGCAATTAAATAACCTGGAGTAGAAATAGATGACTACCAATAGCAGATGCTCATAGAGCAGAAGTTACAAGAATTATTGTGGCCTTTGGATAGCTTTGATTAAATGATAAAAGCAGAGAAATAAGATATTTGGTGTAGAGAAGGTATAGAAGAAGCTGAACAGTTTGTACTTTGTACATTTTCTAGGTGTAGAGAAGAAGGTATAAAGAAAACTTCGAGTCCTAAACACAAAATTGTGCAGTTTTTGTTCCTCCCAATGTGGACAAATCTTCTTCATGTCTAAACAAACCTTCAGTTACTTTGCCTTTTTGTTGCTTCTATTACGAGTTGTCTCTTATATGACTTCCTATGGACCCAAGGACAAACCATGAAGAGGTTGTATACTTTAAGTTATTTGCAGACACATTAAATACGAAAAATAATCTTGATCATTTTGAAGACTATTGAAACCTGGTCAGGCTGAATCTTTCCCAATCATAACACATTGTCTTGTTCATGCACCAAGTCTATGCACCCATGCTCTATTTTTCGAGTTCTTTAATACTTAATGCAGTTGCCTATGGTTGTATAGATGATTCACAGACTCACATTAATGCAGGTGGACTCCTGACTAATGGGTTTATTTTTCTTTCTTATTTCTTTATATTTTCTTCCAGTCTGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATTCTGACACTGAATGTATTGTTACTGGTAATGACACTTTCTCACCCTATCTTTGGTAAAACGAGAATAACCAAAGATAAAAAACACCCTAATGATGGATATGTTTAATGATTTTTAAGCAGTAAGTAGACATATTATAAAAATTCAAAGAGATATGAGATTTGAATGGATAGGAAAAAGAACAGCTAATTAGTGCATATATAGTCAAGGAATACAGTCTATAGGCACTAGTCCCGAAAAGCAAAACCATTACAGCAGCTCTTATGATGAAAGGAACTCTATTAAGCCGTCTTGTGTATCTAGGATATAGCATGTTTCCTTTTTGCAGTTCTGAAGAATATGGAGTCACGGTATTTATGTAAACAATGCTGCTTCTACTTCAGATGGATTAATGATTTTGACATGCAGGGCGGTCATATAATCTTCTTCCAAAGTCTCAGTCTGCTGGGTTACTGTCTATTCCCGCTTGATGTTGGTGCTTTCATTTGCATGCTAAAGGACAACGTGATATTGAAGGTAGTTGTAGTATGTGTTGCACTAGCTTGGAGCTCTTGGGCGGCATACCCCTTCATGAGTACA</genome_strand>
        <mrna_strand>CTGTTCCTGCCATTCCATCTCCACCACCCCTACCTTCATCTGGACAGTCAAATATAGCTGCTACCGGATTCGGATCGCCTCCCAATACCCTTACCGAACCCGTTTGGGATACCGTCAAAAGAGATCTGTCCAGAATTGTTAGTAATTTGAAGCTGGTGGTTTTCCCTAATCCTTATAGAGAAGATCCTGGCAAAGCTCTTCGTGATTGGGATCTATGGGGACCTTTCTTCTTCATTGTTTTCCTTGGTCTCACTTTGTCATGGTCTGCTTCTGTTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATTCTGACACTGAATGTATTGTTACTG.............................................................................................................................................................................................................................................................................................................................................................................................GGCGGTCATATAATCTTCTTCCAAAGTCTCAGTCTGCTGGGTTACTGTCTATTCCCGCTTGATATTGGTGCTTTCATTTGCATGCTAAAGGACAACGTGATATTGAAGGTAGTTGTAGTATGTGTTGCACTAGCTTGGAGCTCTTGGGCGGCATACCCCTTCATGAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8Or8Bn/sgn_marker_seqs" ref_id="SGN-M3124" ref_strand="+" ref_description="SGN-M3124 cLET-6-N21 [est_clones]">
      <seq>ctgttcctgccattccatctccaccacccctaccttcatctggacagtcaaatatagctgctaccggattcggatcgcctcccaatacccttaccgaacccgtttgggataccgtcaaaagagatctgtccagaattgttagtaatttgaagctggtggttttccctaatccttatagagaagatcctggcaaagctcttcgtgattgggatctatggggacctttcttcttcattgttttccttggtctcactttgtcatggtctgcttctgttaagaagtctgaggtttttgctgttgcatttgctctgctggctgccggtgctgtcattctgacactgaatgtattgttactgggcggtcatataatcttcttccaaagtctcagtctgctgggttactgtctattcccgcttgatattggtgctttcatttgcatgctaaaggacaacgtgatattgaaggtagttgtagtatgtgttgcactagcttggagctcttgggcggcataccccttcatgagtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0099J13-9vrl3/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0099J13.1" temp_strand="+" temp_description="C07SLe0099J13.1  AC210368.1 htgs_phase:3 submitted_to_sgn_as:C07SLe0099J13 upload_account_name:france">
        <position start="18319" stop="25957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18619" g_stop="18899" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18900" i_stop="25062" i_length="6163">
            <donor d_prob="0.957" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25063" g_stop="25137" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="356" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25138" i_stop="25486" i_length="349">
            <donor d_prob="0.857" d_score="0.90"/>
            <acceptor a_prob="0.477" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25487" g_stop="25657" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="527" r_length="171" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0099J13.1" gen_strand="+" ref_id="SGN-M3124" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0099J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18619" e_stop="18899"/>
          <exon e_start="25063" e_stop="25137"/>
          <exon e_start="25487" e_stop="25657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCCCGCCATTTCATCTCCACAACCCCTACCTTCATCGGTACAGTCGAATATAGCTGCTACTGGATTTGGATCGCCTCCCAATACCCTTATAGAACCCGTTTGGGATACCGTCAAAAGAGATCTGCCTAGAATTGTTAGTAATTTGAAGCTGGTGGTTTTCCCTAATCCTTATAGAGAAGATCCTGGCAAGGCTCTTCGTGATTAAGATCTATGAGGACCTTTCTTCTACATTGTTTTCATTGGTGTCACTTTGTCATGGTCTACTTTTGTTAAAAAGGTACATTGTCAAATTTTATCAACAAGCTTACCACTTTACTGTTCAAACTATCGGTTGAGTCTAATCTACTTGTGTCTTATGCTAGAAGGTACTCAATTCTGTTAATGTTTTAGAAGTATTTCTTTTGTAGTTTTGATTTATATCGTGTGTAATTCCAATTTACTCTGGCACAAGGGGCACTCATATAAGATCCAAATTATAGCTAAATAGAAAGGATAATGCTTTGAATTACAAGTGCCGGAGGAACAAATGAAAGAACTAGAGTTTTATATGTTGGCAAACAGCTGATCAAAACTTACATAGGTCAAAAGGATAACTTTAATACCATTAAATGTTTCAATACCAGGTGCATAAATTCTTCCAAGGAAAAACTAGAAGTGTGTGATTACTTTTCTTTTCAGATATAATCTTCATTGTTTATGAGGGAAAGGATTGTCCCATATAGGAGATAACATCCTGTTTTCTTAATCAATAGGTGACTAATAATACTCCCTCGCCAGCCAAAGATTGGACATCTATGGCATGGAAAACATAACATGATGACCCAATATTGGGTAAACCAAGAACGAAAATGAGTCTAACTCTAATACAATGTGAAGAAATGGATCTTCAGCCTAATCCAACCTAAAAACTAGCTTATGAGGGATGATTCCCTATGACCATATAAGGAGAGCACAACCAATTCCCTCAATCAATATCAGACTTAATAGTTAACACTTCCCCATATGATGAGGACTGGACAATTGGAGCATGTATAACATAACACAGGGATCCAACAATGAGAAGTACACCAACATAGATCAGTGAGTTTTGCTTTGATACCATGATATGACATGGCTATGCTGCCCTTCCCTTGTTCAAGAGAAAGGGAGGACTTTCTTTTAGCTACCGACAACTATGAGCTATATTTTTCTTCCTTTTCTTGTTGTATATTATTGGAATGTAATGAGCTTAAATGAATCAGAAGTGACATAAGTGGATTCATTCAGCCAGCCAACTAGTCTGGGATTTGAGGGATAGTTGTTTTTTTACTAAAAAAAACAACAACTTTATTGTAGTTTCTTGCATGTCCTTTCTTGGTTCAGTTCTCTTTTCTTCTATCTCCACTTCTTTAATGTGCTTACATTCTTAATTGTCTCTACATTTCACCATAAACCCCAACTATTTTTTTGGCTCCTCATCTAGATCCATCTCAAAAGAGAACTCTTGGAAGTGCCTAAGTTTTCAACTTTTTGCTATCTAGCTGTGTATTTTTATCACAGTTCACATCATAATCATGTGGCAGTCCTACTCCTTCCCCTTATAAGTTTCTGTCTTCTTATGGACATGTCCTATAGACTTGCTAGGGTATAGCTAGCTTGGTCTTAAATGACTATAAAGACAACACAATTGAATGGGAGAAAATAGTTCTATTTATTTTGTGCACGGAAGTCCAACATGCATAGAGTTATATTCTGTTTGTCTATTGCCTTTATTTTTTATGACAAGGTAACAAACTATAAATAAATCATAAACACAAAAATGTTTGTAACCAAAGTGAACGTTTACATCAGTGGATCCAAACCCAAAGTATAAACAAGAGAAAGAGCTAAGCTCTTTATCATCTTGTTAAGAACCTTATGATGTCTATAACAGGAACAAAAACATCTATATACTCTAATTCACATCAATAACAAAAGTTAAGATACAATTCTCTTACGTTTTTGTAAGGAACTACTAGTATCTTCAGAACACCTAGATTCCTGTTTAGAAAAAATAAATAATAGGTACTAATATGTTATTAGGCTCAGTTAATGAGGTAGTTACCTAAGGTCCTTTTCGGACTTCTTGTATCGATACCTTCTCTGGTGGTATTCGATCGTCGAGATTTATTCTTAGTCTCATTTTCCTGCTTTTAAGTCTTTTATTGGTCATGGATAATTTTATTTATTTCAGATTTGTGAGAAAGTTGTTTGACATTATTGAGTCTAAGGTATATGAGTGAGAGATGGTATGAATGGGTGGAGAGTTTCATAGTGTGTATTAGGAGAATGTCTTCAAGTCTTGATGCCCTGCATCGGGTGTCGCAAAGGCTCAGAGAAGCATTAGATATTAGAGGTAGAGTGTACAAGACAAAGGGAAGCAGAGATAAGGCTACGAGCCTCTTCTATGCCTGAAGTTCAATAAACCTGGTCGCTTTATTTTTGTCTTTGCTGTCAAAGGGGGTTCTAGGTCAGTTACTATTGTGGCAGAGAACATATTTAATGAGGGCTACACAGTTGACTTTGGGTTCAAAGTTTGCCTGCCTCGTTAAAGATAAAGTTAGACAGGGGGCCTTAAATACCAAAAGGACAAGGGATGTCAGATTATTAAGTGATGAAAGAAGCTTTAAAGAAGTATTAAATAAATCTACATGGATCCATGATGGTGATAATGGGGAGATATGACGGCTTCCATGGGGGGAACAAAGCTGTCTCATGTTAAGAATTCCCTCTTAGAAGATGCTTAGGTTCAGTTTCGCTGAGTGCAATGAAATCCCTTCACAAGATGATGTCAAAAAATGGTCACATTAAGCTTGGATTGGAATATATAACCTCCAAGTGTTTGACATGAACGAGAGTTCATTCCTATTTGATTTTCAAAGTGTGAAGGACGCAGAGCATGTCATGAAAGAATCTTGATAAAACCAGGGAAGCAGTCTCAAGCTGGATTGGTGGTCTTCATTCATCAATAGGTAGAGCATACTCAATTAGTACCAATTTCAAATAGTATTGGATTAGGGATCTAGGTCTGCCACTTTAACTATGGTCCATTAGGGGTTATAAAGCAGATTGGAGAAAACTATGGCGGGTGGTTGGAGAAGTAGCTCAAGAATCACTTGAGATGGGCTTGAGTTAAAGTAATGGTCGCTGAAAAATGTTCGGACGTTGGTTGAGCTCAGGGATGGGGAATGGAGATTCAATTTACAAGTATGGGTAGAAGCGCCGACAAAATTTGAAAAAAGTTTTGTTGTTGAACTCTCAAGAGGGGGCAAAACTTTTCACAGAAAAGGAGTTAACAGCTTGTGTTAGTTAACTGTGGAGAAAGGGAAAACACCAAGAAAGGCGAAAGGGCTAATAGCTAGGAAAGATCTGTTGGATATTGGATACGATTGAGGTTTTTACACAATGGACAAAGATGATGTGCACGTGACTGGATGCAACAATTCAAAAGGAGTAGGGTCAGTGGATCAATTTTACTCCAGATCGCCTTCTCTTCGTTTAAATGAAAGTGGGCCTTCCTCTCATTTTAATGAGAAAATACAGAAAGGCTTAATTAAAAAGCCTACAACTGAGCCTTTCATTGAAAGCATAAACGCTCATGTGGGCATTGTATAGGGGCTGCGAATTGCGACAGGTTTTAACTATGAAGATGAAGCAAGGGATGCTCATAAGAGAAAGGGCTGAGGATCACATGTAGAGAATCGACACAAACCATGAAGCATATGTGATCATAATTCCATTAGAGTTGATCTCGGAAACTGAGTTGATTGATGCAGATGAGATAACATGAAAAACAAGGGAAGGACACAAATGCAGCTGATTCCGATTGAAGAGCCTGCACCTATCCAATATGACCTAAGTGAGTGTAATAATAAGGTGGAATCTGATGCAATATCTTGGGTGCATCAAAATACAATTACATTAAGGAAGGAATTTGAATCCATTTTAATGGTTTGGAAAAAGATGCAGAGGCCCTCTTTGAGAGGCTAGATCAAAGAAGAGAAGTTTCACAGTCAAACAAATATAACAACCTTTTGATCCCAAAAGAGGTTAGAAATTTAATCTTTGAGGTCAATTATAACGATGAGGAATGTAGGAGTGAGCTAAGAAAGGGGAGACGACCACCAATTAGAGATCAATAAAGGTTAAAACTATGTCATGACACGTGAGGGGTTTGAATGGGGCAAACAAGAGGAGGCTGGTAAAACAAGTAATTCACAAGTGGGGGGCAAACATTTGTGTTCTTTTAGAAACAAAGATTGGAGGGTAAGTAATTTAATGAGGGAGTTGTGGGCTAATGGATCAGAGAAGTACATTTGGAGGCCAGGAATAGTAGAGGAGGGATTTTGATATGTGGGATAAAAGGGAGTGGGTAGGAGAACTAGTGTAGATTTCCGGCCAGATGATAACATGTAAAATCACAGTGTTTCCTTCATTCTTAAACTCATGCCCTGTCAAACTATACAACTTTGCCACATTAATTTCAATGGAGAGATTGTGTATACCTCAATTTGTTGTTTCAAAGGTTTGAGCATCACGTTTTACCTAATTTTGATTATTGGATGGTTGACAAGTGCATAGTTACTTTCCTTGGTAAAGAACTAGTTACCTTTGATATCCTTTATGCAACAACAAGGGAAAGATTGCAGAGAAACAACTATAGTAGCCCATTCAGTATCTCGAATATCTTGACTCTTGAGATATATATGTTGATTATGAGAGACTTCCAAACTATTAAGCTGGTAAGATTCCAATTTGTGCTTTGTTAGGATGACTAGTGGTTACTGAAAAAAGGTAATGTATTCAGCTGGAGGAAGCGGAAAGAGAGGGATTTAAGTGCATTTTATCTATGCATTTTAGTTTCTTTATTGCAACTATCAATCTTATTTAGTGTATACGGGTTATATAACGAGGATGAAAACAAGATCATTTATCCTTGATTTTCTTGCTTTGTGCTTGTGAGATCTTTTCTTGTTTTTCTTGCTTTGCTTAGCTTAAAATATTCTAGAAATTTTCTTTATCAAGAAAATTTCTAGCAATTTCTTGGCTGTCCTGTGAAGGCCCTTTCTGCGTTTTTGCTTTACCTCTTCATTTTAAGTTGTTGAGGTCGAGGTTTAAGTGACTTGTGCTCAAAGTTTATATTGATGTTGTCACATGCCCTTCTTCCACTTTAATGCAGCTTCACCATCTTATCTCATGTTGGGAGATTAATTAACTTGGAGTAGATAACCGATGATCACAAAGAGGAAGTTACAAGTACTGATCTGACTTTGTCTAGCTTACTTGAATAATAAAAAAAGAGAAAATCAGATGTATATTGTTAAGAATTTACTGGTCTTAAGAAGGAGAAGCAGAAGTGGTAGAAGAAGAGAAGATGCTATGGGAGGGAATGGAGTATAAGCAGAACTCTTAACAAGGGTGCAAATTATAAACGTGTAATTCTAGTGTCAATACTCAATAGTCCTCTACTCCTCTTCTATGTAAAACTATTCAAGCTTGTATATATGATGGAAGACGAGTGTCATGGCTACTTCATAGACTTCCCAAAAATGGTTGGTCAAAACTAGGACTTACAGTGAGACTTACTTGGTCAACCAGAAAGACATCAGTGCATATTTTGCTATACCCTGGGGAAAATATGAATGAAGAAGCATGTTAAACAACCTCAAACTTTTCTGTTTCATTAACTGGAAAGATTCTTCTAAACCTGTCGGCCAAAGAGAAACCTGCACTTTTAACTTGGTATTGGTATAAATGTGATATGTCAGTCCTAAACTCAAGATCACTCAGTTCTGTCTTTTGTTTGCACACCCCAATACCTTATTCAAAAAAAAATGATCACTTAGTTTTCATGCATCTCACTGTGGATAGTTCTTATTCATGTCTAAATGAACCTTTTGCAGTTGTTTTTGCATTTCTTTATTATTTTAAATTTTTTGCTTTTTTGTTGTTACTAGTTATCTCTTATTCAACATGTTGTGAGGAGTTACCTTCCAAGTTTGTGAACAATCAGCAATGTTTCTGTGGACCCATTAACAAACCATCAAGAGATTATCGAATGTCAAGTGGAAATGTTGTTTGTCTAGACAGTTATTTTCAGACAATTTGATGTAATGAATAATTCTAGATCAGCTTTTGGACTGTTGAAACTTAGGTCCGGCCGGATCTTGCTCGATTATGGCATGTTGTCTTGTTACTGTAACGAAGTCCACAGGCAGACATTATTTTACTCTTTTCTTTTATACTTCGTTTAGTTGCCTATGGTTTTATATACCGTAACCAAAATAGCTTGGACTGTTTATATAACCAAACTGAACTAGCTGCAGCTGAAGCTTATGTGATTGATTAATTGATATTTAATTTCTTGTGGTTTGAGTGATTTTGTGATGGATTACTGACTACCGGATTTATTTTTCATCCAGTCCGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATCGTGACATTGAATATCTTGTTACTGGTAATGGAACTTTCTCAACCCATGCCTATACCAAAAATAAGGTCAAAACATGAATAACAAAAGAAAAAGAACACACCTTAATATCGTATATGGTTAAGCATCTTTAGGCAATTACTAGACATATACTAAAGATGCCAAGAGATGTCAGATAGCCAAAGGAAGCTCATTAGTGCATATATACCCAGGAATGCATTCTATAGGCTCCTGTCACTAAAATAATACCATTATACCGACACTAATGAGTGTATATGTAGATTCCTTTTCACAGTACTAAAGTAGTTGGAGTCATAGAATTAATATAAATGATGTTTCTCTTACTTTAGATGAAATTAATGAGTTTGACCTGCAGGGCGGTCACATAATCTTCTTTCAAAGCCTCATTCTTTTAGGTAACTATCTATTCCCACTTGATGTTGGCGCCTTTATTTGCATGCTAAAGGACAATGTAATATTGAAGGTGGTTGTAGTTTGTGTTGCACTAGCTTGGAGTTCTTGGGCAGCATACCCCTTCATAAGTACA</genome_strand>
        <mrna_strand>CTGTTCCTGCCATTCCATCTCCACCACCCCTACCTTCATCTGGACAGTCAAATATAGCTGCTACCGGATTCGGATCGCCTCCCAATACCCTTACCGAACCCGTTTGGGATACCGTCAAAAGAGATCTGTCCAGAATTGTTAGTAATTTGAAGCTGGTGGTTTTCCCTAATCCTTATAGAGAAGATCCTGGCAAAGCTCTTCGTGATTGGGATCTATGGGGACCTTTCTTCTTCATTGTTTTCCTTGGTCTCACTTTGTCATGGTCTGCTTCTGTTAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATTCTGACACTGAATGTATTGTTACTG.............................................................................................................................................................................................................................................................................................................................................................GGCGGTCATATAATCTTCTTCCAAAGTCTCAGTCTGCTGGGTTACTGTCTATTCCCGCTTGATATTGGTGCTTTCATTTGCATGCTAAAGGACAACGTGATATTGAAGGTAGTTGTAGTATGTGTTGCACTAGCTTGGAGCTCTTGGGCGGCATACCCCTTCATGAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8Or8Bn/sgn_marker_seqs" ref_id="SGN-M1988" ref_strand="+" ref_description="SGN-M1988 T1414 [cos_markers]">
      <seq>tttggttaatcatggaaggtctttactccaacatccattactatcttgttgaacatccaacaatcagccaatttgaatggaaacaaggtcacacttttggttcttccatttcttttcttactatttccgtctctgtttacttatgtctgactctcttgtcgattcgtttatctacatttatccctaccctcactaccaccaccattcgcaactttaccgcgatacacagcctcattctttgtctcctctctctactcatggtcattgccggcatcctttctgtcttacaccaaatgccacctcatgattggaagtggatcgtatgttttcccggtgccaatcatactcttccacgtggacctgtgttcttttggatttatatttgttatctttcaaaaattcttgaatttattgatacactcttaatcgtcctaagtagttctagatcaagaaggttatcgttccttcatgtctatcaccacacacttgtgacggttcttggttatattgggcttcaatatgcacagtccatgttgggacttgctcttatagtcaacgcttcgattcatgttataatgtatgcgtattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0099J13-9vrl3/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLe0099J13.1" temp_strand="-" temp_description="C07SLe0099J13.1  AC210368.1 htgs_phase:3 submitted_to_sgn_as:C07SLe0099J13 upload_account_name:france">
        <position start="57666" stop="56474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57366" g_stop="56774" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0099J13.1" gen_strand="-" ref_id="SGN-M1988" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0099J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57366" e_stop="56774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTGAACATGGACGCTCTTTACTCCAACATCCATTACTATCTTGTTGAACATCCAACAATAAGCCAATTTGAATGGAAACAAGGTCACACTTTTGGTTCTTCCATTTCTTTTCTTACTATTTCCGTCTCTGTTTACTTGTGTCTGACTCTCTTGTCGATTCGTTTTTCTGCATTTATCCCTACCCTTACTACCACCACCATTCGCAACATTACCGCGATCCATAGCCTCATTCTTTGTCTCCTCTCTCTACTCATGGTCATTGCCGGCATCCTTTCTGTCTTACACCAAATGCCACCTCATGATTGGAAGTGGATCGTATGTTTTCCAGGTGCCAATCATACTCTTCCACGTGGGCCTGTGTTCTTTTGGATTTATATTTGTTATCTCTCAAAAATTCTTGAATTTATTGATACACTTTTAATCGTCCTAAGTAGTTCTAGATCAAGAAGGTTATCATTCCTTCATGTCTATCACCACACACTTGTGACGGTTCTTGGCTATATTGGACTTCAATATGCACAGTCCATGTTGGGACTTGCTCTTATAGTCAACGCTTCGATTCATGTTATAATGTATGCATATTATTTC</genome_strand>
        <mrna_strand>TTTGGTTAATCATGGAAGGTCTTTACTCCAACATCCATTACTATCTTGTTGAACATCCAACAATCAGCCAATTTGAATGGAAACAAGGTCACACTTTTGGTTCTTCCATTTCTTTTCTTACTATTTCCGTCTCTGTTTACTTATGTCTGACTCTCTTGTCGATTCGTTTATCTACATTTATCCCTACCCTCACTACCACCACCATTCGCAACTTTACCGCGATACACAGCCTCATTCTTTGTCTCCTCTCTCTACTCATGGTCATTGCCGGCATCCTTTCTGTCTTACACCAAATGCCACCTCATGATTGGAAGTGGATCGTATGTTTTCCCGGTGCCAATCATACTCTTCCACGTGGACCTGTGTTCTTTTGGATTTATATTTGTTATCTTTCAAAAATTCTTGAATTTATTGATACACTCTTAATCGTCCTAAGTAGTTCTAGATCAAGAAGGTTATCGTTCCTTCATGTCTATCACCACACACTTGTGACGGTTCTTGGTTATATTGGGCTTCAATATGCACAGTCCATGTTGGGACTTGCTCTTATAGTCAACGCTTCGATTCATGTTATAATGTATGCGTATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9962" PGL_stop="5517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9962" e_stop="9682"/>
            <exon e_start="6143" e_stop="6069"/>
            <exon e_start="5687" e_stop="5517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9962" e_stop="9682" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9681" i_stop="6144" i_length="3538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6143" e_stop="6069" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.988">
            <gDNA_intron_boundary i_start="6068" i_stop="5688" i_length="381"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="5687" e_stop="5517" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9962" stop="9682"/>
              <exon start="6143" stop="6069"/>
              <exon start="5687" stop="5517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTCCTGCCATTCCATCTCCACCACCCCTACCTTCATCTGGACAGTCAAATATAGCTGCTACCGGATTCGGATCGCCTCCCAATACCCTTACCGAACCCGTTTGGGATACCGTCAAAAGAGATCTGTCCAGAATTGTTAGTAATTTGAAGCTGGTGGTTTTCCCTAATCCTTATAGAGAAGATCCTGGCAAAGCTCTTCGTGATTGGGATCTATGGGGACCTTTCTTCTTCATTGTTTTCCTTGGTCTCACTTTGTCATGGTCTGCTTCTGTTAAGAAG : TCTGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATTCTGACACTGAATGTATTGTTACTG : GGCGGTCATATAATCTTCTTCCAAAGTCTCAGTCTGCTGGGTTACTGTCTATTCCCGCTTGATGTTGGTGCTTTCATTTGCATGCTAAAGGACAACGTGATATTGAAGGTAGTTGTAGTATGTGTTGCACTAGCTTGGAGCTCTTGGGCGGCATACCCCTTCATGAGTACA</gDNA_template>
            <first_frame> L  F  L  P  F  H  L  H  H  P  Y  L  H  L  D  S  Q  I  *  L  L  P  D  S  D  R  L  P  I  P  L  P  N  P  F  G  I  P  S  K  E  I  C  P  E  L  L  V  I  *  S  W  W  F  S  L  I  L  I  E  K  I  L  A  K  L  F  V  I  G  I  Y  G  D  L  S  S  S  L  F  S  L  V  S  L  C  H  G  L  L  L  L  R  S :   L  R  F  L  L  L  H  L  L  C  W  L  P  V  L  S  F  *  H  *  M  Y  C  Y  W :   A  V  I  *  S  S  S  K  V  S  V  C  W  V  T  V  Y  S  R  L  M  L  V  L  S  F  A  C  *  R  T  T  *  Y  *  R  *  L  *  Y  V  L  H  *  L  G  A  L  G  R  H  T  P  S  *  V   </first_frame>
            <second_frame>  C  S  C  H  S  I  S  T  T  P  T  F  I  W  T  V  K  Y  S  C  Y  R  I  R  I  A  S  Q  Y  P  Y  R  T  R  L  G  Y  R  Q  K  R  S  V  Q  N  C  *  *  F  E  A  G  G  F  P  *  S  L  *  R  R  S  W  Q  S  S  S  *  L  G  S  M  G  T  F  L  L  H  C  F  P  W  S  H  F  V  M  V  C  F  C  *  E   : V  *  G  F  C  C  C  I  C  S  A  G  C  R  C  C  H  S  D  T  E  C  I  V  T   : G  R  S  Y  N  L  L  P  K  S  Q  S  A  G  L  L  S  I  P  A  *  C  W  C  F  H  L  H  A  K  G  Q  R  D  I  E  G  S  C  S  M  C  C  T  S  L  E  L  L  G  G  I  P  L  H  E  Y  </second_frame>
            <third_frame>   V  P  A  I  P  S  P  P  P  L  P  S  S  G  Q  S  N  I  A  A  T  G  F  G  S  P  P  N  T  L  T  E  P  V  W  D  T  V  K  R  D  L  S  R  I  V  S  N  L  K  L  V  V  F  P  N  P  Y  R  E  D  P  G  K  A  L  R  D  W  D  L  W  G  P  F  F  F  I  V  F  L  G  L  T  L  S  W  S  A  S  V  K  K  :  S  E  V  F  A  V  A  F  A  L  L  A  A  G  A  V  I  L  T  L  N  V  L  L  L  :  G  G  H  I  I  F  F  Q  S  L  S  L  L  G  Y  C  L  F  P  L  D  V  G  A  F  I  C  M  L  K  D  N  V  I  L  K  V  V  V  V  C  V  A  L  A  W  S  S  W  A  A  Y  P  F  M  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0099J13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9960" stop="9682"/>
                    <exon start="6143" stop="6069"/>
                    <exon start="5687" stop="5517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPAIPSPPPLPSSGQSNIAATGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAFICMLKDNVILKVVVVCVALAWSSWAAYPFMST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18619" PGL_stop="25657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18619" e_stop="18899"/>
            <exon e_start="25063" e_stop="25137"/>
            <exon e_start="25487" e_stop="25657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.972" e_score="0.922"/>
          <exon-intron don_prob="0.857" acc_prob="0.477" e_score="0.920"/>
          <exon-only e_score="0.877"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="18619" e_stop="18899" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.972">
            <gDNA_intron_boundary i_start="18900" i_stop="25062" i_length="6163"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="25063" e_stop="25137" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.477">
            <gDNA_intron_boundary i_start="25138" i_stop="25486" i_length="349"/>
          </intron>
          <exon e_serial="3" e_score="0.877">
            <gDNA_exon_boundary e_start="25487" e_stop="25657" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18619" stop="18899"/>
              <exon start="25063" stop="25137"/>
              <exon start="25487" stop="25657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTCCCGCCATTTCATCTCCACAACCCCTACCTTCATCGGTACAGTCGAATATAGCTGCTACTGGATTTGGATCGCCTCCCAATACCCTTATAGAACCCGTTTGGGATACCGTCAAAAGAGATCTGCCTAGAATTGTTAGTAATTTGAAGCTGGTGGTTTTCCCTAATCCTTATAGAGAAGATCCTGGCAAGGCTCTTCGTGATTAAGATCTATGAGGACCTTTCTTCTACATTGTTTTCATTGGTGTCACTTTGTCATGGTCTACTTTTGTTAAAAAG : TCCGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATCGTGACATTGAATATCTTGTTACTG : GGCGGTCACATAATCTTCTTTCAAAGCCTCATTCTTTTAGGTAACTATCTATTCCCACTTGATGTTGGCGCCTTTATTTGCATGCTAAAGGACAATGTAATATTGAAGGTGGTTGTAGTTTGTGTTGCACTAGCTTGGAGTTCTTGGGCAGCATACCCCTTCATAAGTACA</gDNA_template>
            <first_frame> L  F  P  P  F  H  L  H  N  P  Y  L  H  R  Y  S  R  I  *  L  L  L  D  L  D  R  L  P  I  P  L  *  N  P  F  G  I  P  S  K  E  I  C  L  E  L  L  V  I  *  S  W  W  F  S  L  I  L  I  E  K  I  L  A  R  L  F  V  I  K  I  Y  E  D  L  S  S  T  L  F  S  L  V  S  L  C  H  G  L  L  L  L  K  S :   P  R  F  L  L  L  H  L  L  C  W  L  P  V  L  S  S  *  H  *  I  S  C  Y  W :   A  V  T  *  S  S  F  K  A  S  F  F  *  V  T  I  Y  S  H  L  M  L  A  P  L  F  A  C  *  R  T  M  *  Y  *  R  W  L  *  F  V  L  H  *  L  G  V  L  G  Q  H  T  P  S  *  V   </first_frame>
            <second_frame>  C  S  R  H  F  I  S  T  T  P  T  F  I  G  T  V  E  Y  S  C  Y  W  I  W  I  A  S  Q  Y  P  Y  R  T  R  L  G  Y  R  Q  K  R  S  A  *  N  C  *  *  F  E  A  G  G  F  P  *  S  L  *  R  R  S  W  Q  G  S  S  *  L  R  S  M  R  T  F  L  L  H  C  F  H  W  C  H  F  V  M  V  Y  F  C  *  K   : V  R  G  F  C  C  C  I  C  S  A  G  C  R  C  C  H  R  D  I  E  Y  L  V  T   : G  R  S  H  N  L  L  S  K  P  H  S  F  R  *  L  S  I  P  T  *  C  W  R  L  Y  L  H  A  K  G  Q  C  N  I  E  G  G  C  S  L  C  C  T  S  L  E  F  L  G  S  I  P  L  H  K  Y  </second_frame>
            <third_frame>   V  P  A  I  S  S  P  Q  P  L  P  S  S  V  Q  S  N  I  A  A  T  G  F  G  S  P  P  N  T  L  I  E  P  V  W  D  T  V  K  R  D  L  P  R  I  V  S  N  L  K  L  V  V  F  P  N  P  Y  R  E  D  P  G  K  A  L  R  D  *  D  L  *  G  P  F  F  Y  I  V  F  I  G  V  T  L  S  W  S  T  F  V  K  K  :  S  E  V  F  A  V  A  F  A  L  L  A  A  G  A  V  I  V  T  L  N  I  L  L  L  :  G  G  H  I  I  F  F  Q  S  L  I  L  L  G  N  Y  L  F  P  L  D  V  G  A  F  I  C  M  L  K  D  N  V  I  L  K  V  V  V  V  C  V  A  L  A  W  S  S  W  A  A  Y  P  F  I  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0099J13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18837" stop="18899"/>
                    <exon start="25063" stop="25137"/>
                    <exon start="25487" stop="25657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPFFYIVFIGVTLSWSTFVKKSEVFAVAFALLAAGAVIVTLNILLLGGHIIFFQSLILLGNYLFPLDVGAFICMLKDNVILKVVVVCVALAWSSWAAYPFIST</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0099J13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18621" stop="18827"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPAISSPQPLPSSVQSNIAATGFGSPPNTLIEPVWDTVKRDLPRIVSNLKLVVFPNPYREDPGKALRD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="57366" PGL_stop="56774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57366" e_stop="56774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="57366" e_stop="56774" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57366" stop="56774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGTTGAACATGGACGCTCTTTACTCCAACATCCATTACTATCTTGTTGAACATCCAACAATAAGCCAATTTGAATGGAAACAAGGTCACACTTTTGGTTCTTCCATTTCTTTTCTTACTATTTCCGTCTCTGTTTACTTGTGTCTGACTCTCTTGTCGATTCGTTTTTCTGCATTTATCCCTACCCTTACTACCACCACCATTCGCAACATTACCGCGATCCATAGCCTCATTCTTTGTCTCCTCTCTCTACTCATGGTCATTGCCGGCATCCTTTCTGTCTTACACCAAATGCCACCTCATGATTGGAAGTGGATCGTATGTTTTCCAGGTGCCAATCATACTCTTCCACGTGGGCCTGTGTTCTTTTGGATTTATATTTGTTATCTCTCAAAAATTCTTGAATTTATTGATACACTTTTAATCGTCCTAAGTAGTTCTAGATCAAGAAGGTTATCATTCCTTCATGTCTATCACCACACACTTGTGACGGTTCTTGGCTATATTGGACTTCAATATGCACAGTCCATGTTGGGACTTGCTCTTATAGTCAACGCTTCGATTCATGTTATAATGTATGCATATTATTTC</gDNA_template>
            <first_frame> F  G  *  T  W  T  L  F  T  P  T  S  I  T  I  L  L  N  I  Q  Q  *  A  N  L  N  G  N  K  V  T  L  L  V  L  P  F  L  F  L  L  F  P  S  L  F  T  C  V  *  L  S  C  R  F  V  F  L  H  L  S  L  P  L  L  P  P  P  F  A  T  L  P  R  S  I  A  S  F  F  V  S  S  L  Y  S  W  S  L  P  A  S  F  L  S  Y  T  K  C  H  L  M  I  G  S  G  S  Y  V  F  Q  V  P  I  I  L  F  H  V  G  L  C  S  F  G  F  I  F  V  I  S  Q  K  F  L  N  L  L  I  H  F  *  S  S  *  V  V  L  D  Q  E  G  Y  H  S  F  M  S  I  T  T  H  L  *  R  F  L  A  I  L  D  F  N  M  H  S  P  C  W  D  L  L  L  *  S  T  L  R  F  M  L  *  C  M  H  I  I   </first_frame>
            <second_frame>  L  V  E  H  G  R  S  L  L  Q  H  P  L  L  S  C  *  T  S  N  N  K  P  I  *  M  E  T  R  S  H  F  W  F  F  H  F  F  S  Y  Y  F  R  L  C  L  L  V  S  D  S  L  V  D  S  F  F  C  I  Y  P  Y  P  Y  Y  H  H  H  S  Q  H  Y  R  D  P  *  P  H  S  L  S  P  L  S  T  H  G  H  C  R  H  P  F  C  L  T  P  N  A  T  S  *  L  E  V  D  R  M  F  S  R  C  Q  S  Y  S  S  T  W  A  C  V  L  L  D  L  Y  L  L  S  L  K  N  S  *  I  Y  *  Y  T  F  N  R  P  K  *  F  *  I  K  K  V  I  I  P  S  C  L  S  P  H  T  C  D  G  S  W  L  Y  W  T  S  I  C  T  V  H  V  G  T  C  S  Y  S  Q  R  F  D  S  C  Y  N  V  C  I  L  F  </second_frame>
            <third_frame>   W  L  N  M  D  A  L  Y  S  N  I  H  Y  Y  L  V  E  H  P  T  I  S  Q  F  E  W  K  Q  G  H  T  F  G  S  S  I  S  F  L  T  I  S  V  S  V  Y  L  C  L  T  L  L  S  I  R  F  S  A  F  I  P  T  L  T  T  T  T  I  R  N  I  T  A  I  H  S  L  I  L  C  L  L  S  L  L  M  V  I  A  G  I  L  S  V  L  H  Q  M  P  P  H  D  W  K  W  I  V  C  F  P  G  A  N  H  T  L  P  R  G  P  V  F  F  W  I  Y  I  C  Y  L  S  K  I  L  E  F  I  D  T  L  L  I  V  L  S  S  S  R  S  R  R  L  S  F  L  H  V  Y  H  H  T  L  V  T  V  L  G  Y  I  G  L  Q  Y  A  Q  S  M  L  G  L  A  L  I  V  N  A  S  I  H  V  I  M  Y  A  Y  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0099J13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57364" stop="56774"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLNMDALYSNIHYYLVEHPTISQFEWKQGHTFGSSISFLTISVSVYLCLTLLSIRFSAFIPTLTTTTIRNITAIHSLILCLLSLLMVIAGILSVLHQMPPHDWKWIVCFPGANHTLPRGPVFFWIYICYLSKILEFIDTLLIVLSSSRSRRLSFLHVYHHTLVTVLGYIGLQYAQSMLGLALIVNASIHVIMYAYYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 7112 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2370 bytes was the average size of a spliced alignment
$ 8008 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2669 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:12:04
-->
