<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 23:10:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327081" ref_strand="+" ref_description="SGN-U327081        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: ABA3 | Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. | chr1:5659408-5665442 FORWARD | Aliases: F19K19.13, F19K19_13, SIR3, ABA DEFICIENT 3, MOLYBDENUM COFACTOR SULFURASE, LOS5, ABA3(evalue: 0, score=903) genbank/nr: gi|22128583|gb|AAL71858.1| molybdenum cofactor sulfurase [Lycopersicon esculentum](evalue: 0, score=1480)">
      <seq>cattcatttgagttggggccgggcttgagtaagaaattccaatcgcaaccgctgcaaaatgaacatcgaatcggagaaagagcaatttctgaaggaatttggaagctattatggttatgccaattcccccaaaaacattgatgaaattagagctactgaatttaagcgcttaaacgatacggtatacttggatcatgctggggcgactctctattccgagtctcaaatggaagctgtgtttaaggacctcaattctactctttatggaaatcctcatagccagagcacttgtagtttggctaccgaggacattgttgggaaagcacgccaacaggtccttagtttcttcaatgcatcaccaagagaatatagctgtatattcacttctggggcaacagctgcactaaagcttgtcggtgagacattcccatggagcagtaacagcagttttatgtactcaatggagaatcataacagcgtccttgggattagggaatatgctctcagtaaaggagctgctgcttttgcagttgacattgaagatacacatgttggtgaatcagaaagcccacagtctaacttaaaactaacacagcaccacattcagagaagaaatgaaggtggcgttctgaaagaagggatgacaggtaacacatacaacttgtttgcattcccatcagaatgcaatttttcaggtcgaaaattcgaccctaacctgattaagattatcaaagaagggtctgaaagaatcttagaaagctcccagtattccagaggttgctggttagttctgatagatgctgctaaaggatgtgctaccaatccaccaaatttatcaatgtttaaagcagactttgttgtgttctcattctacaagttatttggctatccaactggccttggagcactcattgttcgaaaggatgctgctaagctgatgaagaagacctactttagtggaggcacggtgactgcagctattgctgacgttgactttttcaaaagaagagaaggtgtagaggaattttttgaggatggaaccatttcattcttgagcataacagcaattcaacatgggttcaaaataattaatatgctaacgacatcttcgattttccggcatacaacatcaattgcagcatatgtgaggaataagcttttggcactgaagcatgaaaatggagaatttgtttgcacgctgtacgggttattatctagtgagatgggccccacagtttcattcaacatgaaaagaccagatggaacatggtatggataccgtgaggtggaaaaattggcaaccttggcaggaattcaactgcggacaggatgtttttgcaatcctggtgcttgtgctaaatatcttggtttgtcacacttggatcttctttcaaatattgaggctgggcatgtgtgctgggatgatcgtgacattttacatggaaaaccaactggagcagtcagagtatcttttggttacatgtcaacattcgaagatgccatgaaattcgtcaacttcgtggaaagtaattttgtgatatcatcttttaatcggtgtgcattgcagccaaggtccatctctctgccaattgaagggattgcagaagctgctgcacggcatttcctcacatctattactgtctatccaataaagtcttgtgcgggatttagtgtggatcagtggcctctaacatctactgggttattgcatgatcgtgaatggattctcaagagcacaaccggtgaaattcttacccaaaagaaggttccagaaatgtgctatatctccacgctgattgatctcaatttgggggaactgtttgtagagtcacctcgttgcaaggagaaattgcagattgaactcaaatccagctcactggtcactgaaagagatgaaatggatatccaaaatcatagatatgaagtcacaagttacaacaatgaggttgatatctggttcagcagggcgattgatcgaccttgcactctactaagaaattccgattcccagagtcactcctgcataaataagaacgggagtcctggcatgtgcagggatgttggtgctagattgaattttgttaatgaagcccaatttctgctgatatctgaagaaagcataaaggacctcaactctaggctgaaatctaatggacgaaggagaaatggtggacaagcagtacaagttggtgtaatgagatttcgacccaatcttgtagcatctagtggtgaaccatatgcagaagatggatggagcaatataatattggaggcaaatattttatgtcattgggtggttgcaatcgttgccagatgatcaatataaatccagaggctggggaggtgcagaggtttactgaacctttggcaactttagcaggttacaggagagcaaaggggaaaataatgtttggcatactgctaagatatgagaataatacgaaaaccgagtcagatacatggattcgtgtgggagaagaaataattccaaatggagataggcattgattgtttttcgtggaagttcctatttgagacttgtaagtagtcacaacagaggtgatacaagtgttcaatattgtgaagcagcgcaaaaaacacttgctctagccaggtcaatacatcaaactgtactttgttgctgttctctatctgcaaaagagtatgttcttctaaaagaactcgctaagatcttcattctttgtaaccagtactattataagctaataaatacccaatcgtaatattaacttctttggggctgcgtatagttttatgtgtaagtttttagtttgtgtagtgactcggtgtgcaagtacaacccatggatgatgcaaaaatcctcaggacatcgccatgatcttattaacagtgctttctcgagagttgagaccaaacgggtggaaaagatagtgaacgttgaaagctttattcctctcaactatgaaggttaattatgaatgtacatgttaatacttagcaatattggtggaataatatgtttgtcattttgttttcactcttcgcaaaggaacaaagaatccattgctcaaatttcagaagtaaaaggatatactactatcaattatgtcttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="7996" stop="20737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
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          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
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        <intron i_serial="1">
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            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
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            <donor d_prob="0.990" d_score="1.00"/>
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        </intron>
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            <donor d_prob="0.999" d_score="1.00"/>
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      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U327081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
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        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
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          <exon e_start="11413" e_stop="11458"/>
          <exon e_start="11735" e_stop="11773"/>
          <exon e_start="11853" e_stop="12009"/>
          <exon e_start="12712" e_stop="12799"/>
          <exon e_start="13138" e_stop="13254"/>
          <exon e_start="14134" e_stop="14211"/>
          <exon e_start="14301" e_stop="14402"/>
          <exon e_start="15152" e_stop="15242"/>
          <exon e_start="15413" e_stop="15517"/>
          <exon e_start="15717" e_stop="15781"/>
          <exon e_start="16689" e_stop="16840"/>
          <exon e_start="18477" e_stop="18709"/>
          <exon e_start="19237" e_stop="19373"/>
          <exon e_start="19533" e_stop="19643"/>
          <exon e_start="19737" e_stop="20437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATTTGAGTTTGTTCCGGGCTTGAGTAAGAAATTCCAATCGCAACCGCTGCAAAATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACGGTAAGATTTTTCATCTTCCAATTTCAGAATTTTGTTGAAAAATTGTTCCGTTGACTTCACTATTTATTTACTTGTAGATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTCGTATCCTTCCTATCACTTTTCTCTATGAACTTTCTTCAACATGTTTGATTCTGTATTTCTTCACCCTGCATAAATTTTTAGCTGATACCTTAATTCTGTGAAAAACAATAGATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAGGTGAACATCTTCTTCTGCACTATTTTTATTGCTTCTGTTGTCATCATAATCTCTGCATTAGTCCACAATGCTCTGGAAATGTATATTGATGTATGCTGCATTGATATTATCTAAATGCTAAGCTGATGAGAGTCACTGCACATATGTTCTGTCATATTCAGTATTTCACATGTGATAAAGTTTCTGTTGTAATACTTTCTCTTACCATTGAATCACGACTCTATCCAGGTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGCAGTTTTATGTACTCAATGGAGAATCATAACAGCGTCCTTGGGATTAGGGAGTATCCTGAATGGATTAAACCTTTTCATCAAATTTTGTTACTTCTGCTGTCGATTACTTTATGAAAGCTTTCCTCTTTAGCAGTGTATTTAGTTTCTTAATCTACGGTACTACTTCCTGCTTCAAGTGCTACTCTTTTTCACTGAAATACCGGTCCACCTAATCAAAGGCTCCCGACGATTCTATAAATTATCAATATTTTCTTCATGAGGAAGGCATGAATCTTTCCGGCTTTATATTTCAGCAAATGATCGCATCTCTACCTGTCACTGCATCGGGACCATGCTATCTTTGGACATTTGAAAGAATTACCACGAATTGTATGTGTTATCGATGATGTTTCATATATGCAGACCTGATCTGTGGATACGTTCAACACTGCCATTGTTGCTCTTATCGACTGATGTTCTGATGCGTTTAATCATGGTGGTTCTTTTTGAAGTTCTATGATTCCATTCACTTCAAAATCACTTGTTCCACACTTGCTGCTGAAGTGAGGTGTAGAACTCTACTGTTTATCTCATGGATATGATTATACATGTTTCTGGTAGAATTCACTGTACCTCCAAGGGTAACTTTTTATTCTTGACAGATCCTAGTTCTATCTAACCAGCCACAAAATTTCTGTTCTTGTTATTGAAGTGAGACCAAAAATCAAGGACCCAATTCATCTCTAAGTTTGTGTACTATTATCTATGTGTTAATACTTGCTCCGTACGGATAAACCTATTAAGCCAGATAATTGGAAGAGAAAAAACCTTTTTACACAGTAGGAAGAGTTTGCAGAAACAGTTGAGTAGATGGAAGATTTTGCATGATTTTTGATCTTGGTTCATTTTAAATTTGTGTGTATCTCAAGTATTCTTTTCCTTAAGAGTTACTAGATATGCTCTCAGTAAAGGAGCTGCTGCTTTTGCAGTTGACATTGAAGATACACATGTTGGTGAATCAGAAAGCCCACAGTCTAACTTAAAACTAACACAGCACCACATTCAGAGAAGAAATGAAGGTGGCGTTCTGAAAGAAGGGATGACAGGTACCTTTTTATCAATAGTTTCATCAACTTCTACCTTCCACCCCCTTCCACCCACCAAGTCTATAAAGGTAGTTAGCACCTTCAACTCAAATTAGATGTTGTCTGAGTTAATTAAACCCCATCAATCAAGAGAGCCTGTATGACCTTATACCTGTTAGATGGATTATCTTTTTCCTTTTGTTAGTTTTAGAAGTGAAGTAGAAGCTGCTTCACTAATGAAGCACATATTACCAATGTCTTTATCAACTTCAACTCGTTGTAATCTGACACTGTAGTCTTCTTGTTACAGGTAACACATACAACTTGTTTGCATTCCCATCAGAATGCAATTTTTCAGGTCGAAAATTCGACCCTAACCTGATTAAGATTATCAAAGAAGGGTCTGAAAGAATCTTAGAAAGCTCCCAGTATTCCAGGTAAAAGAATAAAAAACTTCTCCAGTGATTGAGAATAGCCGAGGTGCTAAAATTCTGACATTTATCTGAATAGTACTTGTAAGATGTACTCCCAGTAAATCTATAAGAAAATAGACCCTCTTTCAAGCTTGGTTGAGATTTGAGAATAGATTTTAGTGCCTCAAACATCCACCAAAAAAGATATTTCTTTTTAGGCTGGTTCAAATTATGGGAGTATCTAATGATTTTGATATGTTTGACTACAAAAAATTTAGAACATGGCGCATTCCTTAAGTATAGTGGCGCAAAGAAGATTATTTGTTTGTTATAGCTACAAGAGAATATGTTACATTTTGAACAATGTATGCTGATTCAGTCAGGGTTTTGACTTGAAACATCCATTGGTCAACCTTTTGTCCTCAATGTGGTGCTATTCTTATCTCCTTAGCTGGCAAAGCTTGTTCATATATCTTCGAAAACTTTTTATATCTCCATCATTGAGTTGGTCTTGCGCAGATGGGCAGATATAAATTTTCTTTTCTGAATGCAGAGGTTGCTGGTTAGTTCTGATAGATGCTGCTAAAGGATGTGCTACCAATCCACCAAATTTATCAATGTTTAAAGCAGACTTTGTTGTGTTCTCATTCTACAAGGTACTTATATTTTGATACCTGCTGTTTAAGATTACAGGAGGTACTTATATCTCATACCTGCTGTTTTAAGATTATGACTAACATCACGGAGCTTGAAAAGAGTTTTATTTGTTTCTTGTTTAGTTATTTGGCTATCCAACTGGCCTTGGAGCACTCATTGTTCGAAAGGGTAAGCAGCTAAATAAGAAAGCCGATTTTTGTTGTGTTTCCTCACTTATTCTTGTTTAATTTTCTTCTTCGTGTAGTTTACTTCTGACTTGTTTCCCTCTCTGCCTCTATCCCTCTACTTCTCTGTTTATGGAGAGAATGTTGGGTGGAAATGGTGGCAAAGATACCTAGGTTTTTATGTTTTTTCTAGTTGTGTAACAAGATAGACTTATATTTCTCCCCTTTTTTCATCAATGTGAGAATTAACAAAATTTCCTGATCTCTTTCTATTGATCAGATGCTGCTAAGCTGATGAAGAAGACCTACTTTAGTGGAGGTTCTTTTTTAGTGCCTTCTCGTGTTATGATTATATAATTGAAAACTCTAGCAATTTAAGTTAACCTGGATTCTTCTAGGCACGGTGACTGCAGCTATTGCTGACGTTGACTTTTTCAAAAGAAGAGAAGGTGTAGAGGAATTTTTTGAGGATGGAACCATTTCATTCTTGAGCATAACAGCAATTCAACATGGGTTCAAAATAATTAATATGCTAACGACATCTTCGATTTTCCGGTAAGTGAGAGCTTCCTCTCTTTTTTTCGGGATAAGGTGAGAGCTTGCTTCTTTTGTGGGTGGAAGATTCTGAAATTGAATAATGATCAGAATTTTATTGAGATTGCACATATTTTGCTGTCATTACAGATGAACAGAGACATTATATCGTTCACACTAGTGATTAGATTTATTGCGCACTTTTCCGCTTATAGTCTCTTTTTATGATTTATCTAGTGAGTGAGTCCTTCTAATATTATTTGATTAATCCTGCTCATTGCTGCTTTGTAGATGTTGTCGATCTTTTATTTTTTTACTACATAGGTACTGCCAACCTTTTTATAACTAGATGTTACCACAAGTACTGAAATAAGTCAATTTTTGTTTGGCTATTAGGCTAATTATCTTTTGAGTGAACAAGAAAACTTTGTTCTAAAGGTGTAAAATTTTGGGATTTCAAAGTTCCTATGCCTTTTTTTGTCTTCGTTTGATTTGGCAGATAAATTCCTCTTTGTTTAGAGGATATATGGGCATAGTTTCCAGTATCTTTTTTGTGGGTAGAGAAACTAGTCATTCATTTCTGAATCATCTAATTTAGTTCCAACAGAAATATACCAAGAATTTTACAGAAACTGTTGGCCCTTTCTCTTTCTACCCCCCTTAATTGAAGTTGGAGCCTAATGAAAAAAACATGTTCTGAAATGTGCTTTTCTTTTCTGCAAGGCATACAACATCAATTGCAGCATATGTGAGGAATAAGCTTTTGGCACTGAAGCATGAAAATGGAGAATTTGTTTGCACGCTGTACGGGGTAAATATATCGAACATAGCATTCTCGTGACTGGTTTATGTTTTTGGAATTTGGTTGGAATTAGATTCTCGTGAAGAAATTTCTTTATGTCCTAGGCAAAGGCAAGTTTGTTACTGTTGCTCATTCGTGCAGTGGTGATGCAATGATTTTGTTTTTGGGTTGCTTTTTTTTTTGGGGTAGATTTTGATTTTACTCGCGACTTTTTCTATGGTATTCTGTCAGTTTATGAATTGTCTGGTTTGTTATGAAATTGTCCTATGGTTCCGAAGGTGACCAAGTTAATATGACTTTTGTTTTTTTGAGAATAGTAAGTTAAGTTAATATGACTTTTATCTCAGTTATTATCTAGTGAGATGGGCCCCACAGTTTCATTCAACATGAAAAGACCAGATGGAACATGGTATGGATACCGTGAGGTGGAAAAATTGGCAACCTTGGCAGGAATTCAACTGCGGGTAAGAGTTCAATGGTCATATTGTCTATGAAGTATGAATTTTGTTCTGTTTCCCTTGGGAGATGAGATGCTTGCTACTTTATTCTGTTGGAACATAACCCCAGAGCAGATTGATGCTGCTGTTTCTGATATAATGTGCTACTTTCACATGTTATCTTTTTTCAATGTCAAGGAGGATGATATGACTTCCAAGAGGTGTCTTTTTATGATTTATCATTTGTCTTCATTTATATCTGAATGCTTTGATATACTTATCTGGATTTATGAAGTTCTCCATTTAAACTTCTGTTAGCTTGTCTTTGATTTGTGAATTTTGGTCCTTCAGATGCATGGTCACTTACTCTTTTAACCGCCTTCACCACTGTTAGATGCGTTAACTGCCACATTTAGAGGAGTTTTTTAGTCTTCAGTTATTGCCCTCCACAATACGTGCAACTTTTTTACTTTTTGGAATGAGCAGATACCCCATCATGTAATAATCTATGGGAGACCAAATAAGGGATGACTTGCATCCGTACTAACACAATAAGGTCACTGTCTCCTTTTTATGTTTAAGCTTTTGTCCACAAATACCGAGGGTTGTTGTATACATTTGGTTATCAGTAAGCCTATTTGAATATGTAACATAATTTTGGAATAATAGTAAGTAATAACAAATTATCTTAGCTGGAATTGTCTGAGAAAGAGGAGTTTGCAATACAAGGAAATGTTAAATATTTTATGAGAAAGCCCCTAAAGAATAGTCTATCTTAATTCTTAAAGGAATGGAGGGAGGATTAGTCCACAACTTTTGAAACTGGTAATTGAATATCTCAGATATATAATGCTGTTATATGATATGACTAAATTCTTGCTTCTTTTTCCCTGTATTTTTGTATAGACAGGATGTTTTTGCAATCCTGGTGCTTGTGCTAAATATCTTGGTTTGTCACACTTGGATCTTCTTTCAAATATTGAGGTATGTGTTTCCTTTCCCCTCATTTTAATCTGTTACATGGGAAAAAGGGACCACCAATGGCAACAAATTCAAATTATCATTTCATTTAGGCTGGGCATGTGTGCTGGGATGATCGTGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTCGAAGATGCCATGGTAAGGGAACCCACCATTCCCAACCTAATTCCCAAAAAATGAAGTGTAGTTCTATATTTTTTATAGTACAACATGCTTCTTTCTTCAAGATTTTGATGTGCCAAATATTGAACGGTTGGAGTTAAAAATTTACATTTCAACTTAAACGTGGGGCAATCTCTTTATACCTAATTTGTCTTGGGCAATCCTCACTTCGTAAGCTAATTAAAGGTTGTGTTAAGCCTAACATGCACTTTCATAATAGAGAGAGAAAGGAAAATATGTAGCTTAATGGTCACATAGAACAATAATTGCCAACTTCCAATTTTTCACTTTCACTTGGCCATTAGACAGGCAAGCTGAAAGAGAGAAGGAATAAAGAACTAAAACAAAGATGATCTCTTTAGTTCTTCAAGTTTCTATCTGAAGAAAGAGCAACCTTCTAGTCATTTGGATATAAAAAGCTACAAGCTACTTTTCTTTTGACATGGTAAAGAATATATCTAAAACAGCAATATGATTTCTGAAAAAGCTAAATTGTTGAAAAACGGAATATGGTTTGCTACTCCTATTACTTTTTGGTTCTTTTCTATTTCTATATTTCCCTTTTCTGTTGTTTGTTTAGGATGTTGCTGGGCAGAAGCTTCAATTTCTATGAAGTTATCTTGTAATTGCCTGAATGATTGATTAGCAAACTAATCTTTGCTCTGGATGTTCCTCTGAGAGCTAGTCTTATTTACTACTTCATTCCGTTCTACTTGTCTATGCAGAAATTCGTCAACTTCGTGGAAAGTAATTTTGTGATATCATCTTTTAATCGGTGTGCATTGCAGCCAAGGTCCATCTCTCTGCCAATTGAAGGTCAACTTTTGTATCTTTCTACTATTAGGCATGCATTAAATCGATATGTTGAATTGGCTTCTTGTAGACCAGAAGTTGATTGCAAGTGTGGAAGTTTGTCATTTTAGTACCATAAAAGAAATTGTGCAAACTTGTTTAGTCAACCCATGCATTTCATTGACCAATTGCAGGGATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTGGTAGCTATTCTGCTACATCTCATAGGAAAATTCAGTAGTTCAATTTTTATGGCACATATGATTTTGTCAAAATCAAGAGATATTTGCTCATTTCCATTGCATATAAGAAATTGATCCATGTTTTCTTTAGAATATCAAAGTATTTTGACTTTCAATGTATCATTCTTACATGTTGTCATTCCGTTCAATATGAATTTAGGGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAGGTAGAATACTTTATAATTCACATCATGTGTGTTGATGCCTGTTATCCATGTGCAATGCGATGGTAAAACTACCTTCATTCACCCATTATAATTTAATTTAGTAAAGTGGAAAACATAGCATTGTTGTCTATCATTTGATCTACCCATCCTTCAATGTGTTTTGCTTTTAACCTTTTTAATCTCCTAGACAAGCCTTACTAATAATTGACTATTTTCTCAAAGTAGCATGCAACTTCTTAATGTGGGTTGTGTGCATTGTCAGGCTACATGAGGTCTTTTTTTCGACCTTCCCAATGAAATTATTTATTTTCTCTCTTTTCTTCTAATTCTTTTTTCTATTTGTTTGAGATCGAGGGGTAGTTGGTGTTTTCTAATTTGATTTAATGTATTTTAGCTTCTTTTTTGAAGCCTTACAATGCTCATTATATAATAGAATTGATTAGATGCCATCCTTTTTGTACAAGATATTCAACAATTCATGGTCTTAAAAAGAAGTTGAATAGCCTATAATCTGTACTACCAATAACATTTCAAGTCCTTTGAATAACTCTCCATTATCTCAATATATAAATCCTATTTTCTCCTGTGTTCCACTACTAACTTTGAAGTGTCTTAATCTCTACACTCCATGTTTTAACCTGTCATCTAATTTACTTATTTTTTGTTTTTCTCGAAAACATTCTTGAAAATATGCAAAGTGTCATGCTCTCGATTGGGATATAATCTCTACTTTTATATCTAGACATGTATTTTTGTATGAGAAGCAAGTTACTACGGAAGCTTATATCTTTGAAAGATAATTAATGATTATTCAAAATTTACTAGCTATTGCCTCTTAATTATTGTTTCCGATCCAGTGTTGATTACTTCTGCATCAATATCTAAGTCAGGTGTATTTGCGTTCTAGGTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAGGTTTGAACTTCATCTTCACTTCTTTCCTTTTGATATTAAATACTTAAAAGTAGCTACCTCTTAAAAAAATAAAAATAAAAAATCACGTGAATCAATATGTAGAGCTTTACAACTCAACAAAGAGATCCACATAGCCGTCAAAAAAAATTCAAACGGCTTTATGTACATACATTTACAGACATAGTATAGAATCTTATAGTACCTACATATTCTTAACTTGGGTGAGCATCTATGTTTTTTCAGACTATTTTATTTGGTCGTATGTGTAAGAGCCCAACTTTTCTTCTATTCTCGAGTTCAATAATTTTTCCTGTACCTATGTTACTCGGAATCTTTCAAAATGTCAAAGGGTGTGTGTCGGATTCTCCAAAGTATTGTATTTTTGGAGAATCCGACACGGGTGCAGCATCAAAAGTGAAGAGCTCGCTCAACTTAGTCCTGTAGCACTAAAACTTTGTATTTTGAAGAAACTTTTTTTTTGAGAAGGATTTGTATTTTGAAGCTTAAGTTGTTAAAACTTTGTGATCGTGTATCTGAACTGACTTAAACAATGTTGTGTTGCAGTTTCATATATGGCTACCATTAAGTGAAGGGTTCTTTCTTCACTTTTACAGTTGTACTTATTTTTTAATCAGAAAGGTGAAGTTTCATTAAGATAACACGGTTTACGTACAGTAGAAAAAGTTAGAAAGGAAAAATAGTGCTCCTTAAGTTTGGTCTAATATTTATGAAGAATTTTGTTTGTGGGCTTGCATGTGAGTTTCTAAGTTCGAACCACTTAGATGTAGTGGTTGAAAAGATGATTAGGGTATGTGCGTTGTACTGATGTAAGTTCTGTTGTTGACCGTCTGGTATGGTTGCCTTTAGTGAAGCATGAGAAGTTATAATTCTTGACAATGTTTGCCCTAATATTTTTGAACGGTGGTGTCCAGGCCAACTTGTGCGACCTGGACTGTTCCATTAGGTACCAACTGCCTCCCACCCAGCAACACTACTATCGGGTAACTTTGTCTACCAAGGCTTAGGCAGATAGGAAGAAATCACCTAGTGTTTCGTCTCTTCTGTGGTTTGAACCTTATCTCTAAGGTTGCACGCACTTCATTGACCACTAGGCCACACATTTCGACCTTCACTGTGTTTGCTTTTCAAAGATTGTACTCATTGTTTTCCTTGTATGTTGGAGACTATAATTATGTTCTTTGTCATGTAATAGAGTGTTTGATTAGGATAAAGTGGGTGTATTTCTCATCTGAACAAAGAAATAGTTTATGGAACTAACTGTTTTTAAAGCTTTGGCTCATTGTCGAGCTTCAAACTTCAATTTATTCGTTCCAAAGCAGATTTTAAACAGTTGTGGTTTAATCAGTTGCTTTATTATACTTCCCAAAAGACAAAACCAAGACAAGAAGAAACTAAAAAAGGAGTGAACAGTATTTTGAGAAGGATGTCATTATTTTAGTCTGCATGTTCTTAAAATAGCTACCGTTATCTGTGACTACTGTGGTAGTTCATGTGGAAATGAAAAAGAATCTAAAAAGAAGTGTAGTTCATGAATACAGTCTATGTAAGTGGTGTTTTTGAATAGCAGTATTATAGTAATGCTCAATCATTTTTCATGTCTTTTTGATTTGGGTAGATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTAGTATGTTTTCTTTTCTTTTCTCTTTGTTAGTAGTGAGCAAACTCTCTTTCTGGTATTGAGCTCTTCTGAAATAGGAATATAAGGAAACTAGAGAATGCACCCAATACAATTGGCCAATTTGAGGCTATTCCTCTGAGCTGAATGCATAACAACTTTTAAACCATGTCTATACAATATTAGTGCAATAACTTCTGTTCAGAGGATACAAATGCTTTGCATTACTTGAATCTATGTTAGACGTGGTGGTATTTCTGTTTTTAGAGGAGACTTGAGTTCAGAAGTCTTACCTGTAGTAGCATGGCTGTTGCGGCTGTAGGAGGATCTAAAAGGAATTAAAAGTAAATGTATTTGCTGTCTGTTCAGTCTTGTATAGTCCACTATACTTGAATTATTTTCCTGCATAAGTCACTTGTATCACTTAATATGCTTCCTCTGATGGTGGTTAGTGATTTTTACAGAAAGGTTTATGTATAAAGCAAATAGGTTCATCAAAAATTCATTCGACCTTTTTTCTTTAATCTTTTTAGATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCAATATAAATATTGGAGGCAAATATTTTATGGTGAGTTCTAACTTCTAGCTCGTATAAAATCAAGATATGGGAACATGAAGTGACTGTACATTCTGTCCTAAAATTATAGATGAGTATTCTTGTATTCAGTAAGTCAACAGAGGTGCTAAAAGTTCCTCATGTGTTCATACTTAAATTGTTTAAGTGCAGTCATTGGGTGGTTGCAATCGTTGCCAGATGATCAATATAAATCCAGAGGCTGGGGAGGTGCAGAGGTTTACTGAACCTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAGGTTAGAACCCACCTAAAAATGAAGAAACCCCCCCAAAAAATGCAGTTTGCTTGCTTAGTTAATTGCTTCTTACCATATCTCCCTTGCAAACAGGGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTTCGCAAAGGAACAAAGAATCCATTGCTCAAATTTCAGAAGTAAAAGGATATACTACTATCAATTATGTCTTGACT</genome_strand>
        <mrna_strand>CATTCATTTGAGTTGGGGCCGGGCTTGAGTAAGAAATTCCAATCGCAACCGCTGCAAAATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACG.............................................................................ATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTC...............................................................................................................ATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAG....................................................................................................................................................................................................................................GTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGCAGTTTTATGTACTCAATGGAGAATCATAACAGCGTCCTTGGGATTAGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTCTCAGTAAAGGAGCTGCTGCTTTTGCAGTTGACATTGAAGATACACATGTTGGTGAATCAGAAAGCCCACAGTCTAACTTAAAACTAACACAGCACCACATTCAGAGAAGAAATGAAGGTGGCGTTCTGAAAGAAGGGATGACAG.................................................................................................................................................................................................................................................................................................GTAACACATACAACTTGTTTGCATTCCCATCAGAATGCAATTTTTCAGGTCGAAAATTCGACCCTAACCTGATTAAGATTATCAAAGAAGGGTCTGAAAGAATCTTAGAAAGCTCCCAGTATTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGCTGGTTAGTTCTGATAGATGCTGCTAAAGGATGTGCTACCAATCCACCAAATTTATCAATGTTTAAAGCAGACTTTGTTGTGTTCTCATTCTACAAG...........................................................................................................................TTATTTGGCTATCCAACTGGCCTTGGAGCACTCATTGTTCGAAAGG....................................................................................................................................................................................................................................................................................ATGCTGCTAAGCTGATGAAGAAGACCTACTTTAGTGGAG...............................................................................GCACGGTGACTGCAGCTATTGCTGACGTTGACTTTTTCAAAAGAAGAGAAGGTGTAGAGGAATTTTTTGAGGATGGAACCATTTCATTCTTGAGCATAACAGCAATTCAACATGGGTTCAAAATAATTAATATGCTAACGACATCTTCGATTTTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACAACATCAATTGCAGCATATGTGAGGAATAAGCTTTTGGCACTGAAGCATGAAAATGGAGAATTTGTTTGCACGCTGTACGGG..................................................................................................................................................................................................................................................................................................................................................TTATTATCTAGTGAGATGGGCCCCACAGTTTCATTCAACATGAAAAGACCAGATGGAACATGGTATGGATACCGTGAGGTGGAAAAATTGGCAACCTTGGCAGGAATTCAACTGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTTTTTGCAATCCTGGTGCTTGTGCTAAATATCTTGGTTTGTCACACTTGGATCTTCTTTCAAATATTGAG.........................................................................................GCTGGGCATGTGTGCTGGGATGATCGTGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTCGAAGATGCCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGTCAACTTCGTGGAAAGTAATTTTGTGATATCATCTTTTAATCGGTGTGCATTGCAGCCAAGGTCCATCTCTCTGCCAATTGAAG..........................................................................................................................................................................GGATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG.......................................................................................................................................................................................................GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGGAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCAATAT-AATATTGGAGGCAAATATTTTATG...............................................................................................................................................................TCATTGGGTGGTTGCAATCGTTGCCAGATGATCAATATAAATCCAGAGGCTGGGGAGGTGCAGAGGTTTACTGAACCTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAG.............................................................................................GGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTTCGCAAAGGAACAAAGAATCCATTGCTCAAATTTCAGAAGTAAAAGGATATACTACTATCAATTATGTCTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315567" ref_strand="+" ref_description="SGN-U315567        Tomato 200607 #1 [33 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxymethylbilane synthase / porphobilinogen deaminase, chloroplast / pre-uroporphyrinogen synthase, identical to SP:Q43316 | chr5:2663191-2665793 REVERSE | Aliases: F8L15.10, F8L15_10(evalue: 4e-150, score=528) genbank/nr: porphobilinogen(evalue: 5e-153, score=544)">
      <seq>cggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22571" stop="26446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22871" g_stop="23069" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="605" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="812" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="990" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25682" g_stop="26145" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="991" r_stop="1454" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1455" polyA_stop="1472"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U315567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1454</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22871" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="26145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335212" ref_strand="+" ref_description="SGN-U335212        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxymethylbilane synthase / porphobilinogen deaminase, chloroplast / pre-uroporphyrinogen synthase, identical to SP:Q43316 | chr5:2663191-2665793 REVERSE | Aliases: F8L15.10, F8L15_10(evalue: 2e-66, score=249) genbank/nr: porphobilinogen(evalue: 1e-64, score=249)">
      <seq>gagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22579" stop="26049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22879" g_stop="23069" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24361" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="472" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24362" i_stop="25139" i_length="778">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25140" g_stop="25304" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="637" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="815" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25682" g_stop="25749" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="883" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U335212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22879" e_stop="23069"/>
          <exon e_start="24081" e_stop="24361"/>
          <exon e_start="25140" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</genome_strand>
        <mrna_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315566" ref_strand="+" ref_description="SGN-U315566        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxymethylbilane synthase / porphobilinogen deaminase, chloroplast / pre-uroporphyrinogen synthase, identical to SP:Q43316 | chr5:2663191-2665793 REVERSE | Aliases: F8L15.10, F8L15_10(evalue: 3e-78, score=288) genbank/nr: gi|15241573|ref|NP_196445.1| hydroxymethylbilane synthase (porphobilinogen deaminase, chloroplast) (pre-uroporphyrinogen synthase) [Arabidopsis thaliana] gi|2495179|sp|Q43316|HEM3_ARATH Porphobilinogen deaminase, chloroplast precursor (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) gi|1084340|pir||S50762 hydroxymethylbilane synthase (EC 4.3.1.8) precursor - Arabidopsis thaliana gi|313150|emb|CAA51941.1| hydroxymethylbilane synthase [Arabidopsis thaliana] gi|313838|emb|CAA52061.1| hydroxymethylbilane synthase [Arabidopsis thaliana] gi|10178270|emb|CAC08328.1| hydroxymethylbilane synthase [Arabidopsis thaliana] gi|16930521|gb|AAL31946.1| AT5g08280/F8L15_10 [Arabidopsis thaliana] gi|17979402|gb|AAL49926.1| putative hydroxymethylbilane synthase [Arabidopsis thaliana] gi|21689853|gb|AAM67570.1| putative hydroxymethylbilane synthase [Arabidopsis thaliana](evalue: 2e-76, score=288)">
      <seq>attgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgatactttgtatgttagtgtagcattttcacttcaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23977" stop="26286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24277" g_stop="24486" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="417" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25440" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="443" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25441" i_stop="25681" i_length="241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25682" g_stop="25986" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="746" r_length="303" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U315566" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24277" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25440"/>
          <exon e_start="25682" e_stop="25986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGG</genome_strand>
        <mrna_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCA.................................................................................................................................................................................................................................................TGA-AGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTG-ATACTTTGTATGTTAGTGTAGCATTTTCACTTCAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326420" ref_strand="+" ref_description="SGN-U326420        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF02410: Domain of unknown function DUF143 | chr3:4128414-4129963 FORWARD | Aliases: MGH6.4(evalue: 1e-68, score=257) genbank/nr: gi|18399794|ref|NP_566439.1| expressed protein [Arabidopsis thaliana] gi|15795122|dbj|BAB02500.1| IojAP protein-like [Arabidopsis thaliana] gi|22655076|gb|AAM98129.1| expressed protein [Arabidopsis thaliana] gi|27311971|gb|AAO00951.1| expressed protein [Arabidopsis thaliana](evalue: 8e-67, score=257)">
      <seq>gcaactgagtttccccatacaatcctctcttgtgcagtatcttctaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatgtcgttgttcatctatttcttcctccgcagcgtgagtactacaacctggaagaattctatggcaatgcagcatccatcgaactaccatttgagaaccaacaacaattgcgaggacctactggttattgaagtcccaacagttatggcctcgtggtgattaacagaaagtgtagcaaattatgaggcaatcacagtgttcccccgattgctgacaaggaacgattaacatatctgggcaaactctgttgatccactggttgcgttatttttcttaaattagtagtaagataaagctctctactaagttgtctctgtagaagtattggttaagaaatagtttacaagcattctgaactaataaaggctcattgtcacgtttgatgaaagaacctaacatcctgcttctttttccttgatgtgagttgagtttaaatgaagaatgaggatttaaataaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26412" stop="30714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26712" g_stop="26993" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="409" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="29052" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="548" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29053" i_stop="29188" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29189" g_stop="29277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="637" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29278" i_stop="29954" i_length="677">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29955" g_stop="30413" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="1095" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1096" polyA_stop="1111"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U326420" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1096</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26712" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="29052"/>
          <exon e_start="29189" e_stop="29277"/>
          <exon e_start="29955" e_stop="30413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTGGTAAGTAATTCATGGTACTTTAATAGTCCTGCTATTACTTGTGTCATGGCTGAAGAATTTCACTGGATATGAATTTATTATTGCCCTTGTTCTTGATTCACCCCTATTTTTTAATTTCATATGTGGACAAGTGCTGTTAAGGGGCAATATCCTTCTGCACATTAGGATTAGAAGGGAGTAACTTTGTTGTTGACTAACGACTACTTACTGTAACTGTGTTGCTTCACATTGTCCAACATAACTTACCCAAACATAGTGCTTAACTGTTACAAGTTATCAAACCATCAAGCAACTTGCAAAAATCCGTTATTATTCAGTTGAGCAAGAAAAGGAGGTTTAAAGGTTCAAAGCACAGAGATCTCTGACCCAGCCAGAGAAGCATTAGTTTATATCGTGCCCTGCTTCATATGGGTAGTGCTTTTCAAAAATCATCCCATGCATAAGGTTAACATCTGGTTTCAACATGGACTAGCTATCCCAGGGTGGCCAAACATGTTATGGCCAGGGTCAGAAGAAATGTTACCTCCAAAGCTATAAGGACTAAACATGAGTGGTTTGTTTTGATAAGGCGATGCTATATTATGTGCTACTATTTGACCCTTGCAGCAACCATGTACTATGCCATGAAATGTTGTTCTTCTTGCTGATATGTCGCTCCATGCCTCTCTTAATTACAGGTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</genome_strand>
        <mrna_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAAGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTT-CCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321835" ref_strand="+" ref_description="SGN-U321835        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4130014-4132474 REVERSE | Aliases: MGH6.5(evalue: 0, score=662) genbank/nr: gi|42564109|ref|NP_187900.2| expressed protein [Arabidopsis thaliana] (evalue: 0, score=662)">
      <seq>atggccccaataatttctgtctccggcgatcagctgaacgacggtactggtcctcccttttcgacttgtgcctttttttcgctctattcctctcgcatttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcattccaggccatcttttcagggtgctcagcaccatggcctgacaactcaagaggatggtcatttggggatgttctcggatcatgagcatcaggttgacagaagccttgttacaattgttaagtcggataggcctggtctacatgtaagagattttcatggtcactgggttcttgtggatggtgatcttggcccccaagaagcaattgtttatcctggccttgcattatatcaggcaactgcgggctatatcagccctgcacttcatcggacagacattggtaatcagcagggtagcatatatggacgctgttctctctcttttaaacttatgcccaagtccatgaccaacctcaattgttcagaaatgcgggctgctggtcatggggttgaagctcaattccagcttcccgtaccagttgatgacttcatgcagagatcaactgatcagttgcttaacaggagcaatttccctacattcaactttccaacagtccaagatggatctatgaagcccatgatgaggagaaggaagagtaactcaagatctaaacctcttccaccttcaaagaggttgagattggaggcacaaagagttctcaaagagagagttcaagacatagctgataaaaagggcattaagctgaggttctgcaccttaaaggattgtgaaagtcacatccagtcacttgatagcccatgtacgaacataagaatggaaattggatggccaccgggagttccatttgttcacccacatgatctcccaaataaggctaagattggatttcttgaaacatatgaacctggttggtctgcaactcatgatatggagttgagcctaatcgatcccggacagccaagtcaacacacttctaactgaatctatgttgctatcagaatgctgcctgatgagtgcttggattcattataccaatatttgtctgcttagttatgctcgtctcatgcagatcttgctaatttgtatatgaacttcaattaagatatgaatgcacaatgaactgttcctttgtttatcgtaatcgttgtccctgtacatattagtttgtaaaatttgatggaatattagttgtaaattccgaatgtactcctagttttctcggctctcatatcttagctcttgtggagcattaaatgttggccaaagagtttgaatttatatagtggttggataaaagaagctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34679" stop="30335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34379" g_stop="34209" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33864" g_stop="32767" g_length="1098"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="1268" r_length="1097" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32766" i_stop="31612" i_length="1155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31611" g_stop="31234" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1269" r_stop="1646" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31233" i_stop="30948" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30947" g_stop="30614" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1647" r_stop="1980" r_length="334" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-U321835" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1981</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34379" e_stop="34209"/>
          <exon e_start="33864" e_stop="32767"/>
          <exon e_start="31611" e_stop="31234"/>
          <exon e_start="30947" e_stop="30614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACTGTAACTATCATTCCCCTAATTATCCTTGTTTTTCTGCATCCGTATCTTTATTTAAGCAGTAGATGTTTCTGGTTTCTTTAGTTGCATATGCATGAGAGATGGCGTATAAGTTCACATCTTTCCTATCTTCTGCATTGGCCATGTTGCTAGTAACAACATTAATCCATTTGAAGAAGCATTTCTGTTCATCTACTCATGCATTCTAGAAGTTTACACCCTCCCTCCCTGTTCTTTTACTTTTACTTTTGGCTCTTGTATATACTGAAAGCAAAAATGTGTTCTGCAGGAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</genome_strand>
        <mrna_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT..............................................................................................................................................................................................................................................................................................GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTAAATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATAAAAGAAGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346913" ref_strand="+" ref_description="SGN-U346913        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agaaaagaacctcaacacagcattccttcttcttcttcttacgaggaatctaagacatcttgacttgtattaggatcatctatgcactaaaaactcaaaagaaggattcaattcatcttaagtttctgtaaggagctgtttgtagcttcaaaatatctttaatttctttccttccaatccgaaaaaagtacttggtgttaattttgaagatttatttagaacaaaaacaaaatgctgactgaagctggtgtctcacgtatgattggtcagaaatatgaaaagttttgtgacaagcttagccgtttttcataattaaaagtgaaaggtcttatttttgcttgttgaggacctgaaggactgttattatctcgaatatctggaaatgactttcaaacatggtcaaagtagataaagcagcctctattggtttaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="32657" stop="31621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32357" g_stop="31921" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-U346913" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32357" e_stop="31921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</genome_strand>
        <mrna_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTATTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318131" ref_strand="+" ref_description="SGN-U318131        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14826073-14829044 REVERSE | Aliases: None(evalue: 0, score=749) genbank/nr: gi|50945595|ref|XP_482325.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|51964886|ref|XP_507227.1| PREDICTED P0453D01.16-2 gene product [Oryza sativa (japonica cultivar-group)] >gi|37572952|dbj|BAC98602.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 0, score=769)">
      <seq>tcacactctccaatacctgcagtgaagagaaaaatataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgctattgtgaggagtctgtcaggcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaaaaaatgtttcatcctttacctccaacattaggacctggagtatatctgggttcagtggagagagctacatcttttatcagagacgacctttggtatggcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaggctgctttcttgagctattttgattcatggctccatgcagtagacataaaaatttgcctttgatgtatatttatgctggatatgttaagaaaccaagtgtttatatatatatatatatgtattgcaagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41573" stop="34419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41273" g_stop="41128" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39520" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="639" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39201" g_stop="39058" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="783" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38246" g_stop="38006" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="1024" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36966" g_stop="36466" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1025" r_stop="1525" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35499" g_stop="34724" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1526" r_stop="2301" r_length="776" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2305" polyA_stop="2318"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-U318131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2301</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41273" e_stop="41128"/>
          <exon e_start="40012" e_stop="39520"/>
          <exon e_start="39201" e_stop="39058"/>
          <exon e_start="38246" e_stop="38006"/>
          <exon e_start="36966" e_stop="36466"/>
          <exon e_start="35499" e_stop="34724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</genome_strand>
        <mrna_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342590" ref_strand="+" ref_description="SGN-U342590        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttcctctcgaagaatccatcactattgcgattgatcttccttttttcactttctcttcttcatgcagagatatcttcacacgcccatgttttttttttgaattttccaggaccccattaattttgttccctcaatttgtactgtgcacaatcgttatcaaaataagtgctttttcaatattactgtatttattatccgtttttcctctcaagtgtttcttttcacttttcctgttcctggatttgatgcttttccttggttatatatgtgtggctgagaactttttgtttttatttccgttgttggagaaatacgatatattggacctcacctagtttgggattgaagcatagttattgacatattgctgattgattatggctgttgttgaacttattatctatttctgttgagaaagatacctgttttcttagggccatgttgattgttgaggcagacctatcatcttatgaaggtcattctttcagattttaaagtagctgatagaaatgatgtgatggataatattgttgtaagctgtggctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41412" stop="40258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41112" g_stop="40558" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-U342590" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41112" e_stop="40558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</genome_strand>
        <mrna_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGATTTGATGCTTTTCCTTGGTTATATATGTGTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATACGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGCTGATTGATTATGGCTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGACCTATCATCTTATGAAGGTCATTCTTTCAGATTTTAAAGTAGCTGATAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346168" ref_strand="+" ref_description="SGN-U346168        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | auxin-responsive protein-related, similar to indole-3-acetic acid induced protein arg7 (SP:P32295) (Vigna radiata) | chr3:4135507-4136150 REVERSE | Aliases: None(evalue: 5e-16, score=81.6) genbank/nr: gi|21536952|gb|AAM61293.1| unknown [Arabidopsis thaliana](evalue: 4e-14, score=81.6)">
      <seq>tttccatctctgcaatattcatcttctctatatcatattttagtttttttttaattaatgaaaccaagaaggaaggaagaaattaagagaagatgaagaagctgaatttgttattgaggaagtgtaagactttgtcaaggcaactaggaagaagctcatcttatagtagtttaaggtcaaaatctgcaagagaagatttttggaatgtggaagataatatggaagattttgagacaattcttgttggcaactcaagaaggaaatatgtcataaaatcaaaatacttgagccatccactattgaatgctctaatagagaaatcaaagcaaaagcatggggaaaaagatcatctttccgttaagtgtgaagttgtgctttttgatcatcttctctgggtacttgaaaatgctgatcctatcaaccttaattctgattcatttgaggaattggctgatctatatgctgtttaatgtgaataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="42917" stop="41836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42617" g_stop="42136" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-U346168" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42617" e_stop="42136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</genome_strand>
        <mrna_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTTAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGGTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGCTGTTTAATGTGAATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316709" ref_strand="+" ref_description="SGN-U316709        Tomato 200607 #1 [10 ESTs aligned]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcattcatataattctatagcttgaaagcttagctgcataaatttctcattgctcatttttcttgttgatttcatttgtgtgagagcataaataaatagatcttggaagcttgaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="45365" stop="43579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45065" g_stop="43880" g_length="1186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1186" r_length="1186" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-U316709" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1186</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45065" e_stop="43880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316710" ref_strand="+" ref_description="SGN-U316710        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | GTP-binding protein-related, similar to GTP-binding protein GI:10176676 from (Bacillus halodurans) | chr1:20967384-20970006 FORWARD | Aliases: T6H22.14, T6H22_14(evalue: 6e-171, score=597) genbank/nr: gi|42562778|ref|NP_176001.2| GTP-binding protein-related [Arabidopsis thaliana] (evalue: 5e-169, score=597)">
      <seq>ttgtttcattttcccaaatttttgggctcaaatacaattttggtgcaattatttgggtaattttctaatttaccatgtagcgtcgtcgctgagttaaacccgagaaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52708" stop="43751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52408" g_stop="51999" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="600" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="654" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="765" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="828" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48639" g_stop="48385" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="1083" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47883" g_stop="47737" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1084" r_stop="1230" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47631" g_stop="47604" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1258" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46708" g_stop="46638" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1259" r_stop="1329" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="45384" g_stop="45325" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1330" r_stop="1389" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="44493" g_stop="44051" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1390" r_stop="1832" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-U316710" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1831</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52408" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48385"/>
          <exon e_start="47883" e_stop="47737"/>
          <exon e_start="47631" e_stop="47604"/>
          <exon e_start="46708" e_stop="46638"/>
          <exon e_start="45384" e_stop="45325"/>
          <exon e_start="44493" e_stop="44051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTAC-ATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTA</genome_strand>
        <mrna_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACCATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332941" ref_strand="+" ref_description="SGN-U332941        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) (Leishmania donovani) | chr2:8195339-8199567 REVERSE | Aliases: F19F24.10, F19F24_10(evalue: 8e-60, score=226) genbank/nr: gi|3004552|gb|AAC09025.1| unknown protein [Arabidopsis thaliana] (evalue: 6e-58, score=226)">
      <seq>taacactcataaaacagagccactgttcttctttacgcagaggagctagcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcaaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccacaggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacttcatctgaggatggtactattaaatattgggacttttccgtgccggagctaatgagaagtattgatgttaagttgcccatttactcaatggtaattccaggtttatcatcagaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggagggagctgtgctttatggtggcagataaggaagtgtaacttaactaaatgtactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaataccaactaaagattctgatcattcagtgcttcagaacatcagattacatcatacgaaaaccctgagcactctagcttttcatccaacagatagaatagtttcagctggagatgtacaggaaagatcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64844" stop="67780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65144" g_stop="65316" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="359" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66515" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="539" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67260" g_stop="67480" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="758" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U332941" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65144" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66515"/>
          <exon e_start="67260" e_stop="67480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</genome_strand>
        <mrna_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGT-ACAGGAAAGATCTT-ATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321501" ref_strand="+" ref_description="SGN-U321501        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) (Leishmania donovani) | chr2:8195339-8199567 REVERSE | Aliases: F19F24.10, F19F24_10(evalue: 2e-76, score=283) genbank/nr: Quinonprotein(evalue: 5e-79, score=298)">
      <seq>acgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatacataagataagccgaggaaatcttgctgatcttgaggaaacagggaagttcggatatgcatctctgtacggggacctaccagactttagcttagagagaaaacaagctgcatcgattacatcagtaccatcagaaagatattgggagacgctattcagtggaccatctcacaatcttcctcctcttgctaaattgtgttccacattcctggaatcattactacagaagagtagtgcagttgagtgattggcagtagtgtccggttgagctttgttgcaaggcagacttgctaatctatgctcatcgatgaaacgacaacattgttgttaggcttgatcccattgtagccgagagagagctgcctgacatgcacatgcacatgcacatagtaatactagctcgaaagtgtgaacagtggggtcgacttataatctggtctaagaacgagccagcccgttcagttaaagctttcgagttcaagaaaaagatgccctgatcgagtgggtttaaaattttggtagcacgatttgatgtgtcgtctggatattgaattttttgtagcttgcaacttattgagcctgcagggctaagtaggcatactcaatactgaatagatgttcttttttgacaatatttggtcatgtgttgtgtttaattataacatttataagcgcaatagagttgctatttaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71406" stop="76262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71706" g_stop="71742" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72032" g_stop="72161" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="167" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="300" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="467" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74317" g_stop="74509" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="660" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74510" i_stop="75310" i_length="801">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75311" g_stop="75961" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="1311" r_length="651" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1312" polyA_stop="1343"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U321501" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1311</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71706" e_stop="71742"/>
          <exon e_start="72032" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74509"/>
          <exon e_start="75311" e_stop="75961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAGGTGTGTCCCGTCTTCTCTGCCTAAGTTCATCTGACACTAAGCTTTTATGTATTTCAGTGTCTGGTGTCTATTAATTTGGGGATGTACATGGGCCTTTTTTGGGTTATTTTATGTGATAGGTTGCTTCAGAATACTTTGGATTGGATCAATATACCAAAGTACTTGAAATAAACCTTGTTTTTAAAAACTTTATAATGGGTGCTACAAGCCTTAAAATGACGGGTCCAGAGGCACAAAGATGTATGGTTGCTGAATGCGTTGTGATAAGAAGTCCACTACTACAACTCATTACTAAGTTGGATCAGCTATATATTAATCCTCATTTCATCATTTAAACTCATATTCAATCATCATCTTAACAAATAAAATACGACATGTCCTGTGATAACCTTACGAGAGAAAGGGATTGGGTTTGATGTATTTGTTCTCCTCTGCCCACAAGGTCCTTGTTTCTTCATGGCATGATTGTCAGATCAAGCACATATTCTTGAAAATCTGTACCAAAATCTGTGGATTGATGATATTTAAGAGGAAACAAGCTCTATCTCTAGAACATATATTCGCTGGTAAAATCAGATGATGCATTATTTATAGCTTTAACAAGGAGGTGGGGGGTTTGGATAAGAGGGCTAAGGGGAAGGGCTGCATTAGGGAATTGAACACCTACCCGACTGAGCTGTAGGGCAATTCTCTGCAGGTGAAATATCCTGATACTTTATAATAATCTTCAGAAAACAGTATTTCTTTTTTTAAAAAAGATAATTGTCATGACTGATGAAACTATATGCTATCTATTTGCAGGGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATAAGCGCAATAGAGTTGCTATTTAAAT</genome_strand>
        <mrna_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATTACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATAAGCGCAATAGAGTTGCTATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328548" ref_strand="+" ref_description="SGN-U328548        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:29751865-29753837 REVERSE | Aliases: YUP8H12R.30, YUP8H12R_30(evalue: 8e-72, score=265) genbank/nr: Contains(evalue: 5e-70, score=265)">
      <seq>ggaaatgtcggtcatgctatgcaattagttgataaaatggaggaatatggatatccaacaaatactgtgacttacaattctcttataagaggactttgtatgagggggaacctgaacaagagcctgcaatttgtcgaaaagttgattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcaaagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttgaaggacgttgggaagaagcgaatgagtttctggcagagatggttggagaagatcgttctccatcgattgtaacgtacaatatattgatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="77929" stop="79038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78229" g_stop="78738" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U328548" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78229" e_stop="78738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</genome_strand>
        <mrna_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAAGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332200" ref_strand="+" ref_description="SGN-U332200        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:29751865-29753837 REVERSE | Aliases: YUP8H12R.30, YUP8H12R_30(evalue: 1e-35, score=146) genbank/nr: Contains(evalue: 9e-34, score=146)">
      <seq>cacggatttactccagactcttacacctattcttcattgatcagaggattatgcttggaaaagatgttggtggctgctgtcgatgtattctacatgatggaagaaaatggatataggcctgatattgacaatttcaatgcgcttgtgcttggactatgcaaatccaaaagaacagacttgtcattaaaggtatttgaggacatgatcagcaaaggttatatgcctaatgagataacatataccattctagtcgaaggcatcatccatgaagatcacaaggagcttgcatcagtagtcctaagggaactgcaccggaaagaagtaataagtagaaatactgttgaaagacttgctatgcaatatgagcttgaagatatggcagtatgctgatctttcacaaaaccaatggcgtgtggtcacaggatgagaaactaacaaaggttcttcattagcaaatgctaaatacaccaaataaacaaagttattctcatgctgtatgtcagatggtaactttacacaactaataaaccttcgggataattggttttcagatatggtagttgattcatagtaggcttcaaataggtgagtggtgaaacttgtcaattctcactagcttactcttgctactcaattgctgttacaaaaaaagttgtatatcctaaatcctttatctaaagctttctttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="78814" stop="80076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79114" g_stop="79769" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="708"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U332200" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79114" e_stop="79769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</genome_strand>
        <mrna_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATATTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTCTAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326706" ref_strand="+" ref_description="SGN-U326706        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | SNARE-associated protein-related, contains weak similarity to SNARE-associated protein snapin (Mus musculus) gi:4206090:gb:AAD11418 | chr1:29749584-29750708 REVERSE | Aliases: YUP8H12R.31, YUP8H12R_31(evalue: 3e-29, score=125) genbank/nr: gi|30699390|ref|NP_178028.2| expressed protein [Arabidopsis thaliana] gi|26451487|dbj|BAC42842.1| unknown protein [Arabidopsis thaliana] gi|28973157|gb|AAO63903.1| unknown protein [Arabidopsis thaliana](evalue: 2e-27, score=125)">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaaattgcatggtttcagctctgtgccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="83774" stop="87585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84074" g_stop="84314" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84315" i_stop="85612" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85613" g_stop="85777" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85778" i_stop="86064" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86065" g_stop="86122" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86123" i_stop="87084" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87085" g_stop="87285" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="665" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U326706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84074" e_stop="84314"/>
          <exon e_start="85613" e_stop="85777"/>
          <exon e_start="86065" e_stop="86122"/>
          <exon e_start="87085" e_stop="87285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343133" ref_strand="+" ref_description="SGN-U343133        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:20955811-20957077 FORWARD | Aliases: F14J16.33(evalue: 9e-24, score=107) genbank/nr: At1g56020(evalue: 6e-22, score=107)">
      <seq>ctctttctttttatatatatatatattccattctgtaatcgttacgttaacgtttcttctatttgtatgtacgccggaaattatggcttcagcttgcgttaacaaaatgggtatgtcgccggagaagtttttggattgttctccggctgcgaagtacaagtcatatggttggttaagtccaaggatgtcatttagtaaggacggcgaagcttccaaagttgccggagctaagcagacgagtgttgaaaatgataaagtggaggaattagatccagaagtttcgaaagatatgggcgattttgagttttgccttgaagatccggttaatatgctgccagctgatgagctttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-Ppxaf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="91330" stop="91949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91630" g_stop="91949" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-U343133" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91630" e_stop="91949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATC</genome_strand>
        <mrna_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAAGGACGGCGAAGCTTCCAAAGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAAGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8296" PGL_stop="20437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8296" e_stop="8471"/>
            <exon e_start="8549" e_stop="8647"/>
            <exon e_start="8759" e_stop="8817"/>
            <exon e_start="9046" e_stop="9206"/>
            <exon e_start="10090" e_stop="10241"/>
            <exon e_start="10531" e_stop="10657"/>
            <exon e_start="11187" e_stop="11289"/>
            <exon e_start="11413" e_stop="11458"/>
            <exon e_start="11735" e_stop="11773"/>
            <exon e_start="11853" e_stop="12009"/>
            <exon e_start="12712" e_stop="12799"/>
            <exon e_start="13138" e_stop="13254"/>
            <exon e_start="14134" e_stop="14211"/>
            <exon e_start="14301" e_stop="14402"/>
            <exon e_start="15152" e_stop="15242"/>
            <exon e_start="15413" e_stop="15517"/>
            <exon e_start="15717" e_stop="15781"/>
            <exon e_start="16689" e_stop="16840"/>
            <exon e_start="18477" e_stop="18709"/>
            <exon e_start="19237" e_stop="19373"/>
            <exon e_start="19533" e_stop="19643"/>
            <exon e_start="19737" e_stop="20437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.983"/>
          <exon-intron don_prob="0.990" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.490" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.744" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.480" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.891" e_score="0.993"/>
          <exon-intron don_prob="0.201" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="8296" e_stop="8471" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="8472" i_stop="8548" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8549" e_stop="8647" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.895">
            <gDNA_intron_boundary i_start="8648" i_stop="8758" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8759" e_stop="8817" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.797">
            <gDNA_intron_boundary i_start="8818" i_stop="9045" i_length="228"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9046" e_stop="9206" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.490">
            <gDNA_intron_boundary i_start="9207" i_stop="10089" i_length="883"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10090" e_stop="10241" e_length="152"/>
          </exon>
          <intron i_serial="5" don_prob="0.934" acc_prob="0.979">
            <gDNA_intron_boundary i_start="10242" i_stop="10530" i_length="289"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10531" e_stop="10657" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.959">
            <gDNA_intron_boundary i_start="10658" i_stop="11186" i_length="529"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11187" e_stop="11289" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.817" acc_prob="0.967">
            <gDNA_intron_boundary i_start="11290" i_stop="11412" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11413" e_stop="11458" e_length="46"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.989">
            <gDNA_intron_boundary i_start="11459" i_stop="11734" i_length="276"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="11773" e_length="39"/>
          </exon>
          <intron i_serial="9" don_prob="0.901" acc_prob="0.990">
            <gDNA_intron_boundary i_start="11774" i_stop="11852" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="11853" e_stop="12009" e_length="157"/>
          </exon>
          <intron i_serial="10" don_prob="0.960" acc_prob="0.903">
            <gDNA_intron_boundary i_start="12010" i_stop="12711" i_length="702"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="12712" e_stop="12799" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.959" acc_prob="0.938">
            <gDNA_intron_boundary i_start="12800" i_stop="13137" i_length="338"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="13138" e_stop="13254" e_length="117"/>
          </exon>
          <intron i_serial="12" don_prob="0.975" acc_prob="0.768">
            <gDNA_intron_boundary i_start="13255" i_stop="14133" i_length="879"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="14134" e_stop="14211" e_length="78"/>
          </exon>
          <intron i_serial="13" don_prob="0.992" acc_prob="0.766">
            <gDNA_intron_boundary i_start="14212" i_stop="14300" i_length="89"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="14301" e_stop="14402" e_length="102"/>
          </exon>
          <intron i_serial="14" don_prob="0.654" acc_prob="0.744">
            <gDNA_intron_boundary i_start="14403" i_stop="15151" i_length="749"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="15152" e_stop="15242" e_length="91"/>
          </exon>
          <intron i_serial="15" don_prob="0.966" acc_prob="0.934">
            <gDNA_intron_boundary i_start="15243" i_stop="15412" i_length="170"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="15413" e_stop="15517" e_length="105"/>
          </exon>
          <intron i_serial="16" don_prob="0.480" acc_prob="0.941">
            <gDNA_intron_boundary i_start="15518" i_stop="15716" i_length="199"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="15717" e_stop="15781" e_length="65"/>
          </exon>
          <intron i_serial="17" don_prob="0.989" acc_prob="0.874">
            <gDNA_intron_boundary i_start="15782" i_stop="16688" i_length="907"/>
          </intron>
          <exon e_serial="18" e_score="0.993">
            <gDNA_exon_boundary e_start="16689" e_stop="16840" e_length="152"/>
          </exon>
          <intron i_serial="18" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="16841" i_stop="18476" i_length="1636"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="18477" e_stop="18709" e_length="233"/>
          </exon>
          <intron i_serial="19" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18710" i_stop="19236" i_length="527"/>
          </intron>
          <exon e_serial="20" e_score="0.993">
            <gDNA_exon_boundary e_start="19237" e_stop="19373" e_length="137"/>
          </exon>
          <intron i_serial="20" don_prob="0.967" acc_prob="0.891">
            <gDNA_intron_boundary i_start="19374" i_stop="19532" i_length="159"/>
          </intron>
          <exon e_serial="21" e_score="1.000">
            <gDNA_exon_boundary e_start="19533" e_stop="19643" e_length="111"/>
          </exon>
          <intron i_serial="21" don_prob="0.201" acc_prob="0.895">
            <gDNA_intron_boundary i_start="19644" i_stop="19736" i_length="93"/>
          </intron>
          <exon e_serial="22" e_score="1.000">
            <gDNA_exon_boundary e_start="19737" e_stop="20437" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8296" stop="8471"/>
              <exon start="8549" stop="8647"/>
              <exon start="8759" stop="8817"/>
              <exon start="9046" stop="9206"/>
              <exon start="10090" stop="10241"/>
              <exon start="10531" stop="10657"/>
              <exon start="11187" stop="11289"/>
              <exon start="11413" stop="11458"/>
              <exon start="11735" stop="11773"/>
              <exon start="11853" stop="12009"/>
              <exon start="12712" stop="12799"/>
              <exon start="13138" stop="13254"/>
              <exon start="14134" stop="14211"/>
              <exon start="14301" stop="14402"/>
              <exon start="15152" stop="15242"/>
              <exon start="15413" stop="15517"/>
              <exon start="15717" stop="15781"/>
              <exon start="16689" stop="16840"/>
              <exon start="18477" stop="18709"/>
              <exon start="19237" stop="19373"/>
              <exon start="19533" stop="19643"/>
              <exon start="19737" stop="20437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCATTTGAGTTTGTTCCGGGCTTGAGTAAGAAATTCCAATCGCAACCGCTGCAAAATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACG : ATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTC : ATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAG : GTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGCAGTTTTATGTACTCAATGGAGAATCATAACAGCGTCCTTGGGATTAGGGA : ATATGCTCTCAGTAAAGGAGCTGCTGCTTTTGCAGTTGACATTGAAGATACACATGTTGGTGAATCAGAAAGCCCACAGTCTAACTTAAAACTAACACAGCACCACATTCAGAGAAGAAATGAAGGTGGCGTTCTGAAAGAAGGGATGACAG : GTAACACATACAACTTGTTTGCATTCCCATCAGAATGCAATTTTTCAGGTCGAAAATTCGACCCTAACCTGATTAAGATTATCAAAGAAGGGTCTGAAAGAATCTTAGAAAGCTCCCAGTATTCCAG : AGGTTGCTGGTTAGTTCTGATAGATGCTGCTAAAGGATGTGCTACCAATCCACCAAATTTATCAATGTTTAAAGCAGACTTTGTTGTGTTCTCATTCTACAAG : TTATTTGGCTATCCAACTGGCCTTGGAGCACTCATTGTTCGAAAGG : ATGCTGCTAAGCTGATGAAGAAGACCTACTTTAGTGGAG : GCACGGTGACTGCAGCTATTGCTGACGTTGACTTTTTCAAAAGAAGAGAAGGTGTAGAGGAATTTTTTGAGGATGGAACCATTTCATTCTTGAGCATAACAGCAATTCAACATGGGTTCAAAATAATTAATATGCTAACGACATCTTCGATTTTCCG : GCATACAACATCAATTGCAGCATATGTGAGGAATAAGCTTTTGGCACTGAAGCATGAAAATGGAGAATTTGTTTGCACGCTGTACGGG : TTATTATCTAGTGAGATGGGCCCCACAGTTTCATTCAACATGAAAAGACCAGATGGAACATGGTATGGATACCGTGAGGTGGAAAAATTGGCAACCTTGGCAGGAATTCAACTGCGG : ACAGGATGTTTTTGCAATCCTGGTGCTTGTGCTAAATATCTTGGTTTGTCACACTTGGATCTTCTTTCAAATATTGAG : GCTGGGCATGTGTGCTGGGATGATCGTGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTCGAAGATGCCATG : AAATTCGTCAACTTCGTGGAAAGTAATTTTGTGATATCATCTTTTAATCGGTGTGCATTGCAGCCAAGGTCCATCTCTCTGCCAATTGAAG : GGATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG : GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG : GTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAG : ATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTA : ATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCAATATAAATATTGGAGGCAAATATTTTATG : TCATTGGGTGGTTGCAATCGTTGCCAGATGATCAATATAAATCCAGAGGCTGGGGAGGTGCAGAGGTTTACTGAACCTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAG : GGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTTCGCAAAGGAACAAAGAATCCATTGCTCAAATTTCAGAAGTAAAAGGATATACTACTATCAATTATGTCTTGACT</gDNA_template>
            <first_frame> H  S  F  E  F  V  P  G  L  S  K  K  F  Q  S  Q  P  L  Q  N  E  H  R  I  G  E  R  A  I  S  E  G  I  W  K  L  L  W  L  C  Q  F  P  Q  K  H  *  *  N  *  S  Y  *  I  *  A  L  K  R :   Y  G  I  L  G  S  C  W  G  D  S  L  F  R  V  S  N  G  S  C  V  *  G  P  Q  F  Y  S  L  W  K  S  S :   *  P  E  H  L  *  F  G  Y  R  G  H  C  W  E  S  T  P  T   : G  P  *  F  L  Q  C  I  T  K  R  I  *  L  Y  I  H  F  W  G  N  S  C  T  K  A  C  R  *  D  I  P  M  E  Q  *  Q  Q  F  Y  V  L  N  G  E  S  *  Q  R  P  W  D  *  G  :  I  C  S  Q  *  R  S  C  C  F  C  S  *  H  *  R  Y  T  C  W  *  I  R  K  P  T  V  *  L  K  T  N  T  A  P  H  S  E  K  K  *  R  W  R  S  E  R  R  D  D  R :   *  H  I  Q  L  V  C  I  P  I  R  M  Q  F  F  R  S  K  I  R  P  *  P  D  *  D  Y  Q  R  R  V  *  K  N  L  R  K  L  P  V  F  Q  :  R  L  L  V  S  S  D  R  C  C  *  R  M  C  Y  Q  S  T  K  F  I  N  V  *  S  R  L  C  C  V  L  I  L  Q   : V  I  W  L  S  N  W  P  W  S  T  H  C  S  K  G :   C  C  *  A  D  E  E  D  L  L  *  W  R :   H  G  D  C  S  Y  C  *  R  *  L  F  Q  K  K  R  R  C  R  G  I  F  *  G  W  N  H  F  I  L  E  H  N  S  N  S  T  W  V  Q  N  N  *  Y  A  N  D  I  F  D  F  P  :  A  Y  N  I  N  C  S  I  C  E  E  *  A  F  G  T  E  A  *  K  W  R  I  C  L  H  A  V  R   : V  I  I  *  *  D  G  P  H  S  F  I  Q  H  E  K  T  R  W  N  M  V  W  I  P  *  G  G  K  I  G  N  L  G  R  N  S  T  A   : D  R  M  F  L  Q  S  W  C  L  C  *  I  S  W  F  V  T  L  G  S  S  F  K  Y  *   : G  W  A  C  V  L  G  *  S  *  H  F  T  W  K  T  N  W  S  S  Q  S  I  F  W  L  H  V  N  I  R  R  C  H   : E  I  R  Q  L  R  G  K  *  F  C  D  I  I  F  *  S  V  C  I  A  A  K  V  H  L  S  A  N  *  R :   D  C  R  S  C  C  T  A  F  P  H  I  Y  Y  C  L  S  N  K  V  L  C  G  I  *  C  G  S  V  A  S  N  I  Y  W :   V  I  A  *  S  *  M  D  S  Q  E  H  N  R  *  N  S  Y  P  K  E   : G  S  R  N  V  L  Y  L  H  A  D  *  S  Q  F  G  E  T  V  C  R  V  T  S  L  Q  G  E  I  A  D  *  T  Q  I  Q  L  T  G  H  *  K  R  *  N  G  Y  P  K  S  *  :  I  *  S  H  K  L  Q  Q  *  G  *  Y  L  V  Q  Q  G  D  *  S  T  L  H  S  T  K  K  F  R  F  P  E  S  L  L  H  K  *  E  R  E  S  W  H  V  Q  G  C  W  C  *  I  E  F  C  *  *  S  P  I  S  A  D  I  *  R  K  H  K  G  P  Q  L  *  A  E  I  * :   W  T  K  E  K  W  W  T  S  S  T  S  W  C  N  E  I  S  T  Q  S  C  S  I  *  W  *  T  I  C  R  R  W  M  E  Q  Y  K  Y  W  R  Q  I  F  Y   : V  I  G  W  L  Q  S  L  P  D  D  Q  Y  K  S  R  G  W  G  G  A  E  V  Y  *  T  F  G  N  F  S  R  L  Q  E  S  K   : G  E  N  N  V  W  H  T  A  K  I  *  E  *  Y  E  N  R  V  R  Y  M  D  S  C  G  R  R  N  N  S  K  W  R  *  A  L  I  V  F  R  G  S  S  Y  L  R  L  V  S  S  H  N  R  G  D  T  S  V  Q  Y  C  E  A  A  Q  K  T  L  A  L  A  R  S  I  H  Q  T  V  L  C  C  C  S  L  S  A  K  E  Y  V  L  L  K  E  L  A  K  I  F  I  L  C  N  Q  Y  Y  Y  K  L  I  N  T  Q  S  *  Y  *  L  L  W  G  C  V  *  F  Y  V  *  V  F  S  L  C  S  D  S  V  C  K  Y  N  P  W  M  M  Q  K  S  S  G  H  R  H  D  L  I  N  S  A  F  S  R  V  E  T  K  R  V  E  K  I  V  N  V  E  S  F  I  P  L  N  Y  E  G  *  L  *  M  Y  M  L  I  L  S  N  I  G  G  I  I  C  L  S  F  C  F  H  S  S  Q  R  N  K  E  S  I  A  Q  I  S  E  V  K  G  Y  T  T  I  N  Y  V  L  T </first_frame>
            <second_frame>  I  H  L  S  L  F  R  A  *  V  R  N  S  N  R  N  R  C  K  M  N  I  E  S  E  K  E  Q  F  L  K  E  F  G  S  Y  Y  G  Y  A  N  S  P  K  N  I  D  E  I  R  A  T  E  F  K  R  L  N   : D  T  V  Y  L  D  H  A  G  A  T  L  Y  S  E  S  Q  M  E  A  V  F  K  D  L  N  S  T  L  Y  G  N  P   : H  S  Q  S  T  C  S  L  A  T  E  D  I  V  G  K  A  R  Q  Q  :  V  L  S  F  F  N  A  S  P  R  E  Y  S  C  I  F  T  S  G  A  T  A  A  L  K  L  V  G  E  T  F  P  W  S  S  N  S  S  F  M  Y  S  M  E  N  H  N  S  V  L  G  I  R  E :   Y  A  L  S  K  G  A  A  A  F  A  V  D  I  E  D  T  H  V  G  E  S  E  S  P  Q  S  N  L  K  L  T  Q  H  H  I  Q  R  R  N  E  G  G  V  L  K  E  G  M  T   : G  N  T  Y  N  L  F  A  F  P  S  E  C  N  F  S  G  R  K  F  D  P  N  L  I  K  I  I  K  E  G  S  E  R  I  L  E  S  S  Q  Y  S  R :   G  C  W  L  V  L  I  D  A  A  K  G  C  A  T  N  P  P  N  L  S  M  F  K  A  D  F  V  V  F  S  F  Y  K  :  L  F  G  Y  P  T  G  L  G  A  L  I  V  R  K   : D  A  A  K  L  M  K  K  T  Y  F  S  G   : G  T  V  T  A  A  I  A  D  V  D  F  F  K  R  R  E  G  V  E  E  F  F  E  D  G  T  I  S  F  L  S  I  T  A  I  Q  H  G  F  K  I  I  N  M  L  T  T  S  S  I  F  R :   H  T  T  S  I  A  A  Y  V  R  N  K  L  L  A  L  K  H  E  N  G  E  F  V  C  T  L  Y  G  :  L  L  S  S  E  M  G  P  T  V  S  F  N  M  K  R  P  D  G  T  W  Y  G  Y  R  E  V  E  K  L  A  T  L  A  G  I  Q  L  R  :  T  G  C  F  C  N  P  G  A  C  A  K  Y  L  G  L  S  H  L  D  L  L  S  N  I  E  :  A  G  H  V  C  W  D  D  R  D  I  L  H  G  K  P  T  G  A  V  R  V  S  F  G  Y  M  S  T  F  E  D  A  M  :  K  F  V  N  F  V  E  S  N  F  V  I  S  S  F  N  R  C  A  L  Q  P  R  S  I  S  L  P  I  E   : G  I  A  E  A  A  A  R  H  F  L  T  S  I  T  V  Y  P  I  K  S  C  A  G  F  S  V  D  Q  W  P  L  T  S  T   : G  L  L  H  D  R  E  W  I  L  K  S  T  T  G  E  I  L  T  Q  K  K  :  V  P  E  M  C  Y  I  S  T  L  I  D  L  N  L  G  K  L  F  V  E  S  P  R  C  K  E  K  L  Q  I  E  L  K  S  S  S  L  V  T  E  R  D  E  M  D  I  Q  N  H  R :   Y  E  V  T  S  Y  N  N  E  V  D  I  W  F  S  R  A  I  D  R  P  C  T  L  L  R  N  S  D  S  Q  S  H  S  C  I  N  K  N  G  S  P  G  M  C  R  D  V  G  A  R  L  N  F  V  N  E  A  Q  F  L  L  I  S  E  E  S  I  K  D  L  N  S  R  L  K  S   : N  G  R  R  R  N  G  G  Q  A  V  Q  V  G  V  M  R  F  R  P  N  L  V  A  S  S  G  E  P  Y  A  E  D  G  W  S  N  I  N  I  G  G  K  Y  F  M  :  S  L  G  G  C  N  R  C  Q  M  I  N  I  N  P  E  A  G  E  V  Q  R  F  T  E  P  L  A  T  L  A  G  Y  R  R  A  K  :  G  K  I  M  F  G  I  L  L  R  Y  E  N  N  T  K  T  E  S  D  T  W  I  R  V  G  E  E  I  I  P  N  G  D  R  H  *  L  F  F  V  E  V  P  I  *  D  L  *  V  V  T  T  E  V  I  Q  V  F  N  I  V  K  Q  R  K  K  H  L  L  *  P  G  Q  Y  I  K  L  Y  F  V  A  V  L  Y  L  Q  K  S  M  F  F  *  K  N  S  L  R  S  S  F  F  V  T  S  T  I  I  S  *  *  I  P  N  R  N  I  N  F  F  G  A  A  Y  S  F  M  C  K  F  L  V  C  V  V  T  R  C  A  S  T  T  H  G  *  C  K  N  P  Q  D  I  A  M  I  L  L  T  V  L  S  R  E  L  R  P  N  G  W  K  R  *  *  T  L  K  A  L  F  L  S  T  M  K  V  N  Y  E  C  T  C  *  Y  L  A  I  L  V  E  *  Y  V  C  H  F  V  F  T  L  R  K  G  T  K  N  P  L  L  K  F  Q  K  *  K  D  I  L  L  S  I  M  S  *   </second_frame>
            <third_frame>   F  I  *  V  C  S  G  L  E  *  E  I  P  I  A  T  A  A  K  *  T  S  N  R  R  K  S  N  F  *  R  N  L  E  A  I  M  V  M  P  I  P  P  K  T  L  M  K  L  E  L  L  N  L  S  A  *  T  :  I  R  Y  T  W  I  M  L  G  R  L  S  I  P  S  L  K  W  K  L  C  L  R  T  S  I  L  L  F  M  E  I  L  :  I  A  R  A  L  V  V  W  L  P  R  T  L  L  G  K  H  A  N  R :   S  L  V  S  S  M  H  H  Q  E  N  I  A  V  Y  S  L  L  G  Q  Q  L  H  *  S  L  S  V  R  H  S  H  G  A  V  T  A  V  L  C  T  Q  W  R  I  I  T  A  S  L  G  L  G   : N  M  L  S  V  K  E  L  L  L  L  Q  L  T  L  K  I  H  M  L  V  N  Q  K  A  H  S  L  T  *  N  *  H  S  T  T  F  R  E  E  M  K  V  A  F  *  K  K  G  *  Q  :  V  T  H  T  T  C  L  H  S  H  Q  N  A  I  F  Q  V  E  N  S  T  L  T  *  L  R  L  S  K  K  G  L  K  E  S  *  K  A  P  S  I  P   : E  V  A  G  *  F  *  *  M  L  L  K  D  V  L  P  I  H  Q  I  Y  Q  C  L  K  Q  T  L  L  C  S  H  S  T  S :   Y  L  A  I  Q  L  A  L  E  H  S  L  F  E  R  :  M  L  L  S  *  *  R  R  P  T  L  V  E  :  A  R  *  L  Q  L  L  L  T  L  T  F  S  K  E  E  K  V  *  R  N  F  L  R  M  E  P  F  H  S  *  A  *  Q  Q  F  N  M  G  S  K  *  L  I  C  *  R  H  L  R  F  S   : G  I  Q  H  Q  L  Q  H  M  *  G  I  S  F  W  H  *  S  M  K  M  E  N  L  F  A  R  C  T  G :   Y  Y  L  V  R  W  A  P  Q  F  H  S  T  *  K  D  Q  M  E  H  G  M  D  T  V  R  W  K  N  W  Q  P  W  Q  E  F  N  C  G :   Q  D  V  F  A  I  L  V  L  V  L  N  I  L  V  C  H  T  W  I  F  F  Q  I  L  R :   L  G  M  C  A  G  M  I  V  T  F  Y  M  E  N  Q  L  E  Q  S  E  Y  L  L  V  T  C  Q  H  S  K  M  P  * :   N  S  S  T  S  W  K  V  I  L  *  Y  H  L  L  I  G  V  H  C  S  Q  G  P  S  L  C  Q  L  K  :  G  L  Q  K  L  L  H  G  I  S  S  H  L  L  L  S  I  Q  *  S  L  V  R  D  L  V  W  I  S  G  L  *  H  L  L  :  G  Y  C  M  I  V  N  G  F  S  R  A  Q  P  V  K  F  L  P  K  R  R :   F  Q  K  C  A  I  S  P  R  *  L  I  S  I  W  G  N  C  L  *  S  H  L  V  A  R  R  N  C  R  L  N  S  N  P  A  H  W  S  L  K  E  M  K  W  I  S  K  I  I   : D  M  K  S  Q  V  T  T  M  R  L  I  S  G  S  A  G  R  L  I  D  L  A  L  Y  *  E  I  P  I  P  R  V  T  P  A  *  I  R  T  G  V  L  A  C  A  G  M  L  V  L  D  *  I  L  L  M  K  P  N  F  C  *  Y  L  K  K  A  *  R  T  S  T  L  G  *  N  L  :  M  D  E  G  E  M  V  D  K  Q  Y  K  L  V  *  *  D  F  D  P  I  L  *  H  L  V  V  N  H  M  Q  K  M  D  G  A  I  *  I  L  E  A  N  I  L  C :   H  W  V  V  A  I  V  A  R  *  S  I  *  I  Q  R  L  G  R  C  R  G  L  L  N  L  W  Q  L  *  Q  V  T  G  E  Q  R :   G  K  *  C  L  A  Y  C  *  D  M  R  I  I  R  K  P  S  Q  I  H  G  F  V  W  E  K  K  *  F  Q  M  E  I  G  I  D  C  F  S  W  K  F  L  F  E  T  C  K  *  S  Q  Q  R  *  Y  K  C  S  I  L  *  S  S  A  K  N  T  C  S  S  Q  V  N  T  S  N  C  T  L  L  L  F  S  I  C  K  R  V  C  S  S  K  R  T  R  *  D  L  H  S  L  *  P  V  L  L  *  A  N  K  Y  P  I  V  I  L  T  S  L  G  L  R  I  V  L  C  V  S  F  *  F  V  *  *  L  G  V  Q  V  Q  P  M  D  D  A  K  I  L  R  T  S  P  *  S  Y  *  Q  C  F  L  E  S  *  D  Q  T  G  G  K  D  S  E  R  *  K  L  Y  S  S  Q  L  *  R  L  I  M  N  V  H  V  N  T  *  Q  Y  W  W  N  N  M  F  V  I  L  F  S  L  F  A  K  E  Q  R  I  H  C  S  N  F  R  S  K  R  I  Y  Y  Y  Q  L  C  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8324" stop="8471"/>
                    <exon start="8549" stop="8647"/>
                    <exon start="8759" stop="8817"/>
                    <exon start="9046" stop="9206"/>
                    <exon start="10090" stop="10241"/>
                    <exon start="10531" stop="10657"/>
                    <exon start="11187" stop="11289"/>
                    <exon start="11413" stop="11458"/>
                    <exon start="11735" stop="11773"/>
                    <exon start="11853" stop="12009"/>
                    <exon start="12712" stop="12799"/>
                    <exon start="13138" stop="13254"/>
                    <exon start="14134" stop="14211"/>
                    <exon start="14301" stop="14402"/>
                    <exon start="15152" stop="15242"/>
                    <exon start="15413" stop="15517"/>
                    <exon start="15717" stop="15781"/>
                    <exon start="16689" stop="16840"/>
                    <exon start="18477" stop="18709"/>
                    <exon start="19237" stop="19373"/>
                    <exon start="19533" stop="19643"/>
                    <exon start="19737" stop="19847"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2478</number_coding_nucleotides>
                  <number_encoded_amino_acids>826</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRNSNRNRCKMNIESEKEQFLKEFGSYYGYANSPKNIDEIRATEFKRLNDTVYLDHAGATLYSESQMEAVFKDLNSTLYGNPHSQSTCSLATEDIVGKARQQVLSFFNASPREYSCIFTSGATAALKLVGETFPWSSNSSFMYSMENHNSVLGIREYALSKGAAAFAVDIEDTHVGESESPQSNLKLTQHHIQRRNEGGVLKEGMTGNTYNLFAFPSECNFSGRKFDPNLIKIIKEGSERILESSQYSRGCWLVLIDAAKGCATNPPNLSMFKADFVVFSFYKLFGYPTGLGALIVRKDAAKLMKKTYFSGGTVTAAIADVDFFKRREGVEEFFEDGTISFLSITAIQHGFKIINMLTTSSIFRHTTSIAAYVRNKLLALKHENGEFVCTLYGLLSSEMGPTVSFNMKRPDGTWYGYREVEKLATLAGIQLRTGCFCNPGACAKYLGLSHLDLLSNIEAGHVCWDDRDILHGKPTGAVRVSFGYMSTFEDAMKFVNFVESNFVISSFNRCALQPRSISLPIEGIAEAAARHFLTSITVYPIKSCAGFSVDQWPLTSTGLLHDREWILKSTTGEILTQKKVPEMCYISTLIDLNLGKLFVESPRCKEKLQIELKSSSLVTERDEMDIQNHRYEVTSYNNEVDIWFSRAIDRPCTLLRNSDSQSHSCINKNGSPGMCRDVGARLNFVNEAQFLLISEESIKDLNSRLKSNGRRRNGGQAVQVGVMRFRPNLVASSGEPYAEDGWSNINIGGKYFMSLGGCNRCQMININPEAGEVQRFTEPLATLAGYRRAKGKIMFGILLRYENNTKTESDTWIRVGEEIIPNGDRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19841" stop="20083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALIVFRGSSYLRLVSSHNRGDTSVQYCEAAQKTLALARSIHQTVLCCCSLSAKEYVLLKELAKIFILCNQYYYKLINTQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22871" PGL_stop="26145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22871" e_stop="23069"/>
            <exon e_start="24081" e_stop="24486"/>
            <exon e_start="25098" e_stop="25304"/>
            <exon e_start="25415" e_stop="25592"/>
            <exon e_start="25682" e_stop="26145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22871" e_stop="23069" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24081" e_stop="24486" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25098" e_stop="25304" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25415" e_stop="25592" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25682" e_stop="26145" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22871" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </first_frame>
            <second_frame>  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </second_frame>
            <third_frame>   E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22873" stop="23069"/>
                    <exon start="24081" stop="24486"/>
                    <exon start="25098" stop="25304"/>
                    <exon start="25415" stop="25592"/>
                    <exon start="25682" stop="25794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24277" e_stop="24486"/>
            <exon e_start="25098" e_stop="25304"/>
            <exon e_start="25415" e_stop="25440"/>
            <exon e_start="25682" e_stop="25986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24277" e_stop="24486" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25098" e_stop="25304" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25415" e_stop="25440" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25441" i_stop="25681" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="25682" e_stop="25986" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24277" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25440"/>
              <exon start="25682" stop="25986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCA : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGG</gDNA_template>
            <first_frame> I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  </first_frame>
            <second_frame>  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I   : I  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W </second_frame>
            <third_frame>   *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24277" stop="24486"/>
                    <exon start="25098" stop="25304"/>
                    <exon start="25415" stop="25440"/>
                    <exon start="25682" stop="25688"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22879" e_stop="23069"/>
            <exon e_start="24081" e_stop="24361"/>
            <exon e_start="25140" e_stop="25304"/>
            <exon e_start="25415" e_stop="25592"/>
            <exon e_start="25682" e_stop="25749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22879" e_stop="23069" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24081" e_stop="24361" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24362" i_stop="25139" i_length="778"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25140" e_stop="25304" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25415" e_stop="25592" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25682" e_stop="25749" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22879" stop="23069"/>
              <exon start="24081" stop="24361"/>
              <exon start="25140" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG : AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</gDNA_template>
            <first_frame> E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E   : E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  </first_frame>
            <second_frame>  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  :  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G </second_frame>
            <third_frame>   E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R :   N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22879" stop="23069"/>
                    <exon start="24081" stop="24361"/>
                    <exon start="25140" stop="25150"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREETE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24302" stop="24361"/>
                    <exon start="25140" stop="25304"/>
                    <exon start="25415" stop="25592"/>
                    <exon start="25682" stop="25749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMCPHICQRRLSYRATFHVKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26712" PGL_stop="30413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26712" e_stop="26993"/>
            <exon e_start="27936" e_stop="28062"/>
            <exon e_start="28914" e_stop="29052"/>
            <exon e_start="29189" e_stop="29277"/>
            <exon e_start="29955" e_stop="30413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.363" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26712" e_stop="26993" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27936" e_stop="28062" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.363" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28914" e_stop="29052" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.978">
            <gDNA_intron_boundary i_start="29053" i_stop="29188" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29189" e_stop="29277" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.936">
            <gDNA_intron_boundary i_start="29278" i_stop="29954" i_length="677"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="29955" e_stop="30413" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26712" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="29052"/>
              <exon start="29189" stop="29277"/>
              <exon start="29955" stop="30413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG : AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT : TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG : GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG : GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</gDNA_template>
            <first_frame> A  T  E  F  P  H  T  I  L  S  C  A  V  S  S  K  V  E  I  S  Y  R  K  M  K  V  H  S  C  I  H  P  L  P  S  T  P  S  T  G  I  L  V  S  A  G  P  A  E  A  K  L  A  A  N  T  R  K  L  Y  S  L  T  L  N  S  S  N  Y  V  P  F  P  Y  K  D  Q  K  F  S  R  S  S  S  T  D  F  S  R  T  A  I  G  S  :  N  V  S  E  D  T  D  D  M  F  D  D  L  L  R  T  H  G  K  V  V  Y  K  R  N  D  Q  K  P  A  S  E  E  I  D  D  D  A  E  S  L  S   : F  A  M  A  V  A  K  V  A  S  D  V  K  A  G  D  I  K  V  L  F  V  K  P  L  V  Y  W  T  R  F  F  I  I  A  T  A  F  S  R  P  Q  I  D  A  I  G :   T  R  V  R  D  M  A  E  E  Q  Y  G  R  V  A  S  G  D  S  K  P  N  S  W  T  L  L  D  F   : G  D  V  V  V  H  L  F  L  P  P  Q  R  E  Y  Y  N  L  E  E  F  Y  G  N  A  A  S  I  E  L  P  F  E  N  Q  Q  Q  L  R  G  P  T  G  Y  *  S  P  N  S  Y  G  L  V  V  I  N  R  K  C  S  K  L  *  G  N  H  S  V  P  P  I  A  D  K  E  R  L  T  Y  L  G  K  L  C  *  S  T  G  C  V  I  F  L  K  L  V  V  R  *  S  S  L  L  S  C  L  C  R  S  I  G  *  E  I  V  Y  K  H  S  E  L  I  R  A  H  C  H  V  *  *  K  N  L  T  S  C  F  F  F  P  *  C  E  L  S  L  N  E  E  *  G  F  K  </first_frame>
            <second_frame>  Q  L  S  F  P  I  Q  S  S  L  V  Q  Y  L  L  K  L  K  S  R  I  E  K  *  K  Y  T  P  A  F  I  L  F  P  L  L  P  P  P  E  F  W  S  L  P  V  L  R  K  L  S  L  L  L  T  P  E  S  F  I  L  *  L  *  I  P  L  I  M  S  H  F  L  I  K  I  R  N  F  P  E  A  A  L  R  I  F  L  E  R  L  S  V  R :   M  *  V  K  I  Q  M  T  C  L  M  I  S  *  E  R  M  A  K  W  Y  T  K  E  M  T  K  N  L  Q  V  R  R  L  M  M  M  L  K  A  Y  R  :  L  Q  W  L  W  L  K  L  Q  V  M  S  R  L  E  I  *  R  S  S  L  S  S  L  *  Y  I  G  L  G  F  S  L  L  L  L  H  S  L  A  H  R  L  M  P  L   : G  P  E  *  E  I  W  L  R  N  N  M  E  E  L  L  L  E  I  Q  N  P  T  R  G  H  Y  W  T  L  :  V  M  S  L  F  I  Y  F  F  L  R  S  V  S  T  T  T  W  K  N  S  M  A  M  Q  H  P  S  N  Y  H  L  R  T  N  N  N  C  E  D  L  L  V  I  E  V  P  T  V  M  A  S  W  *  L  T  E  S  V  A  N  Y  E  A  I  T  V  F  P  R  L  L  T  R  N  D  *  H  I  W  A  N  S  V  D  P  L  V  A  L  F  F  L  N  *  *  *  D  K  A  L  Y  *  V  V  S  V  E  V  L  V  K  K  *  F  T  S  I  L  N  *  *  G  L  I  V  T  F  D  E  R  T  *  H  P  A  S  F  S  L  D  V  S  *  V  *  M  K  N  E  D  L  N </second_frame>
            <third_frame>   N  *  V  S  P  Y  N  P  L  L  C  S  I  F  *  S  *  N  L  V  *  K  N  E  S  T  L  L  H  S  S  S  S  L  Y  S  L  H  R  N  F  G  L  C  R  S  C  G  S  *  A  C  C  *  H  Q  K  A  L  F  F  N  F  E  F  L  *  L  C  P  I  S  L  *  R  S  E  I  F  Q  K  Q  L  Y  G  F  F  *  N  G  Y  R  F   : E  C  K  *  R  Y  R  *  H  V  *  *  S  P  K  N  A  W  Q  S  G  I  Q  K  K  *  P  K  T  C  K  *  G  D  *  *  *  C  *  K  P  I  V :   C  N  G  C  G  *  S  C  K  *  C  Q  G  W  R  Y  K  G  P  L  C  Q  A  S  S  I  L  D  S  V  F  H  Y  C  Y  C  I  L  S  P  T  D  *  C  H  W  :  D  Q  S  K  R  Y  G  *  G  T  I  W  K  S  C  F  W  R  F  K  T  Q  L  V  D  T  T  G  L  W :   *  C  R  C  S  S  I  S  S  S  A  A  *  V  L  Q  P  G  R  I  L  W  Q  C  S  I  H  R  T  T  I  *  E  P  T  T  I  A  R  T  Y  W  L  L  K  S  Q  Q  L  W  P  R  G  D  *  Q  K  V  *  Q  I  M  R  Q  S  Q  C  S  P  D  C  *  Q  G  T  I  N  I  S  G  Q  T  L  L  I  H  W  L  R  Y  F  S  *  I  S  S  K  I  K  L  S  T  K  L  S  L  *  K  Y  W  L  R  N  S  L  Q  A  F  *  T  N  K  G  S  L  S  R  L  M  K  E  P  N  I  L  L  L  F  P  L  M  *  V  E  F  K  *  R  M  R  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26712" stop="26993"/>
                    <exon start="27936" stop="28062"/>
                    <exon start="28914" stop="29052"/>
                    <exon start="29189" stop="29277"/>
                    <exon start="29955" stop="30088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATEFPHTILSCAVSSKVEISYRKMKVHSCIHPLPSTPSTGILVSAGPAEAKLAANTRKLYSLTLNSSNYVPFPYKDQKFSRSSSTDFSRTAIGSNVSEDTDDMFDDLLRTHGKVVYKRNDQKPASEEIDDDAESLSFAMAVAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGTRVRDMAEEQYGRVASGDSKPNSWTLLDFGDVVVHLFLPPQREYYNLEEFYGNAASIELPFENQQQLRGPTGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34379" PGL_stop="30614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34379" e_stop="34209"/>
            <exon e_start="33864" e_stop="32767"/>
            <exon e_start="31611" e_stop="31234"/>
            <exon e_start="30947" e_stop="30614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.860" e_score="0.999"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34379" e_stop="34209" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="33864" e_stop="32767" e_length="1098"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.860">
            <gDNA_intron_boundary i_start="32766" i_stop="31612" i_length="1155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31611" e_stop="31234" e_length="378"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31233" i_stop="30948" i_length="286"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="30947" e_stop="30614" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34379" stop="34209"/>
              <exon start="33864" stop="32767"/>
              <exon start="31611" stop="31234"/>
              <exon start="30947" stop="30614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG : TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG : GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT : GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</gDNA_template>
            <first_frame> M  A  P  I  I  S  V  S  G  D  Q  L  N  D  G  T  G  P  P  F  S  T  C  A  F  F  S  L  Y  S  S  R  I  W  I  P  P  L  S  R  L  R  P  T  C  L  V  K  P  V  A  V  Q  R  L  P  M  :  W  V  W  S  R  V  N  I  F  Q  H  K  Q  C  K  I  *  R  I  S  W  Q  A  M  A  C  Q  L  W  V  V  *  S  S  V  I  W  Y  H  W  K  V  F  L  L  I  R  I  N  Y  L  S  Q  L  C  H  S  H  W  L  S  I  Q  L  P  L  Y  S  Y  P  Q  V  M  E  L  F  *  G  L  V  *  S  L  P  D  F  T  F  N  T  N  P  L  I  L  Q  R  M  L  F  I  L  M  I  L  R  S  G  V  R  P  L  V  T  M  Q  I  L  N  N  G  K  K  H  M  I  S  G  Q  G  S  L  L  R  N  P  P  L  K  L  N  S  L  L  L  V  W  L  T  Y  S  L  C  L  V  E  Q  Q  G  I  Y  W  T  P  S  A  S  I  *  I  C  V  A  L  H  L  L  K  Y  L  I  M  F  H  S  E  I  E  K  H  H  P  L  Y  Y  P  S  V  V  I  P  G  H  L  F  R  V  L  S  T  M  A  *  Q  L  K  R  M  V  I  W  G  C  S  R  I  M  S  I  R  L  T  E  A  L  L  Q  L  L  S  R  I  G  L  V  Y  M  *  E  I  F  M  V  T  G  F  L  W  M  V  I  L  A  P  K  K  Q  L  F  I  L  A  L  H  Y  I  R  Q  L  R  A  I  S  A  L  H  F  I  G  Q  T  L  V  I  S  R  V  A  Y  M  D  A  V  L  S  L  L  N  L  C  P  S  P  *  P  T  S  I  V  Q  K  C  G  L  L  V  M  G  L  K  L  N  S  S  F  P  Y  Q  L  M  T  S  C  R  D  Q  L  I  S  C  L  T  G  A  I  S  L  H  S  T  F  Q  Q  S  K  M  :  D  L  *  S  P  *  *  G  E  G  R  V  T  Q  D  L  N  L  F  H  L  Q  R  G  *  D  W  R  H  K  E  F  S  K  R  E  F  K  T  *  L  I  K  R  A  L  S  *  G  S  A  P  *  R  I  V  K  V  T  S  S  H  L  I  A  H  V  R  T  *  E  W  K  L  D  G  H  R  E  F  H  L  F  T  H  M  I  S  Q  I  R  L  R  L  D  F  L  K  H  M  N  L  V  G  L  Q  L  M  I  W  S  *  A  *  S  I  P  D  S  Q  V  N  T  L  L  T  :  E  S  M  L  L  S  E  C  C  L  M  S  A  W  I  H  Y  T  N  I  C  L  L  S  Y  A  R  L  M  Q  I  L  L  I  C  I  *  T  S  I  K  I  *  M  H  N  E  L  F  L  C  L  S  *  S  L  S  L  Y  I  L  V  C  K  I  *  W  N  I  S  C  K  F  R  M  Y  S  *  F  S  R  L  S  Y  L  S  S  C  G  A  F  Y  V  G  Q  R  V  *  I  Y  I  V  V  G  S  *  K  L  T  *  L  </first_frame>
            <second_frame>  W  P  Q  *  F  L  S  P  A  I  S  *  T  T  V  L  V  L  P  F  R  L  V  P  F  F  R  S  I  P  L  A  F  G  F  L  L  S  R  D  *  D  L  H  A  W  *  N  R  L  Q  C  N  V  C  L  C :   G  Y  G  L  E  L  I  Y  F  S  T  S  S  A  K  S  R  G  F  H  G  R  Q  W  P  A  S  S  G  S  C  E  A  Q  *  F  G  T  I  G  R  S  S  F  *  F  V  *  I  I  C  L  N  F  V  T  V  I  G  S  V  F  S  C  H  Y  T  A  I  H  K  *  W  S  S  F  K  V  *  S  R  V  C  P  T  L  L  S  T  Q  T  L  L  S  C  S  G  C  Y  S  F  *  *  F  S  G  V  V  *  D  L  W  L  P  C  R  S  S  T  M  A  R  N  I  *  F  Q  A  R  A  H  S  F  G  T  H  H  *  N  *  I  P  S  C  W  F  G  *  H  I  L  F  A  W  *  S  S  K  G  Y  I  G  R  H  Q  L  L  F  K  S  A  *  L  S  I  Y  *  N  T  *  *  C  S  T  Q  K  S  R  N  I  I  L  C  I  I  R  L  L  S  F  Q  A  I  F  S  G  C  S  A  P  W  P  D  N  S  R  G  W  S  F  G  D  V  L  G  S  *  A  S  G  *  Q  K  P  C  Y  N  C  *  V  G  *  A  W  S  T  C  K  R  F  S  W  S  L  G  S  C  G  W  *  S  W  P  P  R  S  N  C  L  S  W  P  C  I  I  S  G  N  C  G  L  Y  Q  P  C  T  S  S  D  R  H  W  *  S  A  G  *  H  I  W  T  L  F  S  L  F  *  T  Y  A  Q  V  H  D  Q  P  Q  L  F  R  N  A  G  C  W  S  W  G  *  S  S  I  P  A  S  R  T  S  *  *  L  H  A  E  I  N  *  S  V  A  *  Q  E  Q  F  P  Y  I  Q  L  S  N  S  P  R  W :   I  Y  E  A  H  D  E  E  K  E  E  *  L  K  I  *  T  S  S  T  F  K  E  V  E  I  G  G  T  K  S  S  Q  R  E  S  S  R  H  S  *  *  K  G  H  *  A  E  V  L  H  L  K  G  L  *  K  S  H  P  V  T  *  *  P  M  Y  E  H  K  N  G  N  W  M  A  T  G  S  S  I  C  S  P  T  *  S  P  K  *  G  *  D  W  I  S  *  N  I  *  T  W  L  V  C  N  S  *  Y  G  V  E  P  N  R  S  R  T  A  K  S  T  H  F  *  L :   N  L  C  C  Y  Q  N  A  A  *  *  V  L  G  F  I  I  P  I  F  V  C  L  V  M  L  V  S  C  R  S  C  *  F  V  Y  E  L  Q  L  R  Y  E  C  T  M  N  C  S  F  V  Y  R  N  R  C  P  C  T  Y  *  F  V  K  F  D  G  I  L  V  V  N  S  E  C  T  P  S  F  L  G  S  H  I  L  A  L  V  E  H  F  M  L  A  K  E  F  E  F  I  *  W  L  D  L  R  S  *  L  N  F </second_frame>
            <third_frame>   G  P  N  N  F  C  L  R  R  S  A  E  R  R  Y  W  S  S  L  F  D  L  C  L  F  F  A  L  F  L  S  H  L  D  S  S  S  L  E  I  E  T  Y  M  L  G  E  T  G  C  S  A  T  S  A  Y   : V  G  M  V  S  S  *  Y  I  S  A  Q  A  V  Q  N  L  E  D  F  M  A  G  N  G  L  P  A  L  G  R  V  K  L  S  D  L  V  P  L  E  G  L  P  S  D  S  Y  K  L  S  V  S  T  L  S  Q  S  L  A  Q  Y  S  A  A  I  I  Q  L  S  T  S  D  G  A  L  L  R  S  S  L  E  S  A  R  L  Y  F  Q  H  K  P  S  Y  P  A  A  D  V  I  H  S  D  D  S  Q  E  W  C  K  T  S  G  Y  H  A  D  P  Q  Q  W  Q  E  T  Y  D  F  R  P  G  L  T  P  S  E  P  T  T  E  I  E  F  P  P  A  G  L  A  D  I  F  S  L  L  G  R  A  A  R  D  I  L  D  A  I  S  F  Y  L  N  L  R  S  S  P  F  T  E  I  L  D  N  V  P  L  R  N  R  E  T  S  S  S  V  L  S  V  C  C  H  S  R  P  S  F  Q  G  A  Q  H  H  G  L  T  T  Q  E  D  G  H  L  G  M  F  S  D  H  E  H  Q  V  D  R  S  L  V  T  I  V  K  S  D  R  P  G  L  H  V  R  D  F  H  G  H  W  V  L  V  D  G  D  L  G  P  Q  E  A  I  V  Y  P  G  L  A  L  Y  Q  A  T  A  G  Y  I  S  P  A  L  H  R  T  D  I  G  N  Q  Q  G  S  I  Y  G  R  C  S  L  S  F  K  L  M  P  K  S  M  T  N  L  N  C  S  E  M  R  A  A  G  H  G  V  E  A  Q  F  Q  L  P  V  P  V  D  D  F  M  Q  R  S  T  D  Q  L  L  N  R  S  N  F  P  T  F  N  F  P  T  V  Q  D   : G  S  M  K  P  M  M  R  R  R  K  S  N  S  R  S  K  P  L  P  P  S  K  R  L  R  L  E  A  Q  R  V  L  K  E  R  V  Q  D  I  A  D  K  K  G  I  K  L  R  F  C  T  L  K  D  C  E  S  H  I  Q  S  L  D  S  P  C  T  N  I  R  M  E  I  G  W  P  P  G  V  P  F  V  H  P  H  D  L  P  N  K  A  K  I  G  F  L  E  T  Y  E  P  G  W  S  A  T  H  D  M  E  L  S  L  I  D  P  G  Q  P  S  Q  H  T  S  N   : *  I  Y  V  A  I  R  M  L  P  D  E  C  L  D  S  L  Y  Q  Y  L  S  A  *  L  C  S  S  H  A  D  L  A  N  L  Y  M  N  F  N  *  D  M  N  A  Q  *  T  V  P  L  F  I  V  I  V  V  P  V  H  I  S  L  *  N  L  M  E  Y  *  L  *  I  P  N  V  L  L  V  F  S  A  L  I  S  *  L  L  W  S  I  L  C  W  P  K  S  L  N  L  Y  S  G  W  I  L  E  A  N  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33844" stop="32767"/>
                    <exon start="31611" stop="31234"/>
                    <exon start="30947" stop="30946"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISAQAVQNLEDFMAGNGLPALGRVKLSDLVPLEGLPSDSYKLSVSTLSQSLAQYSAAIIQLSTSDGALLRSSLESARLYFQHKPSYPAADVIHSDDSQEWCKTSGYHADPQQWQETYDFRPGLTPSEPTTEIEFPPAGLADIFSLLGRAARDILDAISFYLNLRSSPFTEILDNVPLRNRETSSSVLSVCCHSRPSFQGAQHHGLTTQEDGHLGMFSDHEHQVDRSLVTIVKSDRPGLHVRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYISPALHRTDIGNQQGSIYGRCSLSFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSTDQLLNRSNFPTFNFPTVQDGSMKPMMRRRKSNSRSKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCESHIQSLDSPCTNIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWSATHDMELSLIDPGQPSQHTSN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34379" stop="34209"/>
                    <exon start="33864" stop="33814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAPIISVSGDQLNDGTGPPFSTCAFFSLYSSRIWIPPLSRLRPTCLVKPVAVQRLPMWVWSRVNIFQHKQCKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32357" e_stop="31921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="32357" e_stop="31921" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32357" stop="31921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</gDNA_template>
            <first_frame> R  K  E  P  Q  H  S  I  P  S  S  S  S  Y  E  E  S  K  T  S  *  L  V  L  G  S  S  M  H  *  K  L  K  R  R  I  Q  F  I  L  S  F  C  K  E  L  F  V  A  S  K  Y  L  *  F  L  S  F  Q  S  E  K  S  T  W  C  *  F  *  R  F  I  *  N  K  N  K  M  L  T  E  A  G  V  S  R  M  I  G  Q  K  Y  E  K  F  C  D  K  L  S  R  F  S  *  L  K  V  K  G  L  S  F  A  C  *  G  P  E  G  L  L  L  S  R  I  S  G  N  D  F  Q  T  W  S  K  *  I  K  Q  P  L  L  V  *  S   </first_frame>
            <second_frame>  E  K  N  L  N  T  A  F  L  L  L  L  L  T  R  N  L  R  H  L  D  L  Y  *  D  H  L  C  T  K  N  S  K  E  G  F  N  S  S  *  V  S  V  R  S  C  L  *  L  Q  N  I  F  N  F  F  P  S  N  P  K  K  V  L  G  V  N  F  E  D  L  F  R  T  K  T  K  C  *  L  K  L  V  S  H  V  *  L  V  R  N  M  K  S  F  V  T  S  L  A  V  F  H  N  *  K  *  K  V  L  V  L  L  V  E  D  L  K  D  C  Y  Y  L  E  Y  L  E  M  T  F  K  H  G  Q  S  R  *  S  S  L  Y  W  F  N  H  </second_frame>
            <third_frame>   K  R  T  S  T  Q  H  S  F  F  F  F  L  R  G  I  *  D  I  L  T  C  I  R  I  I  Y  A  L  K  T  Q  K  K  D  S  I  H  L  K  F  L  *  G  A  V  C  S  F  K  I  S  L  I  S  F  L  P  I  R  K  K  Y  L  V  L  I  L  K  I  Y  L  E  Q  K  Q  N  A  D  *  S  W  C  L  T  Y  D  W  S  E  I  *  K  V  L  *  Q  A  *  P  F  F  I  I  K  S  E  R  S  *  F  C  L  L  R  T  *  R  T  V  I  I  S  N  I  W  K  *  L  S  N  M  V  K  V  D  K  A  A  S  I  G  L  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0077G20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41273" PGL_stop="34724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41273" e_stop="41128"/>
            <exon e_start="40012" e_stop="39520"/>
            <exon e_start="39201" e_stop="39058"/>
            <exon e_start="38246" e_stop="38006"/>
            <exon e_start="36966" e_stop="36466"/>
            <exon e_start="35499" e_stop="34724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41273" e_stop="41128" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.806">
            <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40012" e_stop="39520" e_length="493"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39201" e_stop="39058" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38246" e_stop="38006" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36966" e_stop="36466" e_length="501"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35499" e_stop="34724" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41273" stop="41128"/>
              <exon start="40012" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38006"/>
              <exon start="36966" stop="36466"/>
              <exon start="35499" stop="34724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG : AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG : GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG : GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG : AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG : TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</gDNA_template>
            <first_frame> S  H  S  P  I  P  A  V  K  R  K  I  *  Y  S  *  H  W  G  L  S  W  R  S  V  G  L  T  M  F  A  A  F  C  F  P  F  P  I  S  Y  R  V  *  A  A  C  V  R :   N  M  D  R  A  R  L  N  K  R  T  H  C  S  G  S  T  P  S  E  E  S  A  L  D  L  E  K  Y  C  C  S  Y  S  N  L  P  S  L  S  P  P  T  L  Q  P  Y  A  S  A  G  Q  H  S  E  S  N  A  A  Y  F  S  W  P  S  R  L  N  D  A  A  E  E  R  A  N  Y  F  G  N  L  Q  K  G  V  L  P  E  T  L  G  R  L  P  E  G  Q  R  A  T  T  L  L  D  L  M  T  I  R  A  S  H  S  K  L  L  R  C  Y  S  L  G  T  A  I  G  F  R  I  R  R  G  V  L  T  D  I  P  A  I  L  V  F  V  S  R  K  V  H  K  Q  W  L  S  P  I  Q  C  L  P  T  A  L  E  :  G  P  G  G  V  W  C  E  V  D  V  V  E  F  S  Y  F  G  A  P  E  P  T  P  K  E  Q  L  Y  T  E  I  V  D  D  L  R  G  S  D  P  Y  I  G  S  G  S  Q  :  V  A  S  Q  E  T  Y  G  T  L  G  A  I  V  R  S  L  S  G  N  R  Q  V  G  F  L  T  N  R  H  V  A  V  D  L  D  Y  P  N  Q  K  M  F  H  P  L  P  P  T  L  G  P  G  V  Y  L  G  S  V  E  R  A  T  S  F  I  R  D  D  L  W  Y  G  I  F  A  G  I  N  P   : E  T  F  V  R  A  D  G  A  F  I  P  F  T  D  D  F  D  M  T  S  V  T  T  S  V  K  G  I  G  E  I  G  D  V  K  I  I  D  L  Q  S  P  I  S  S  L  I  G  K  Q  V  T  K  V  G  R  S  S  G  L  T  T  G  T  V  L  A  Y  A  L  E  Y  N  D  E  K  G  I  C  F  L  T  D  F  L  V  N  G  E  N  Q  Q  T  F  D  L  E  G  D  S  G  S  L  I  V  L  K  G  E  N  G  E  K  P  R  P  I  G  I  I  W  G  G  T  A  N  R  G  R  L  K  L  K  V  G  Q  S  P  E  N  W  T  S  G  V  D  L  G  R  L  L  N  F  L  E  L  D  I  I  T  K  D  E  A  L  K   : V  A  V  Q  E  Q  R  A  A  S  A  T  M  V  G  S  T  A  G  D  S  S  P  P  D  I  M  L  P  K  D  K  I  E  P  L  G  L  H  I  Q  Q  I  P  L  E  D  G  I  G  G  P  D  I  N  S  S  P  V  E  A  T  F  N  L  E  E  S  G  I  N  F  D  A  S  V  E  H  Q  F  I  P  S  F  N  G  Q  P  P  A  N  Q  D  D  H  R  D  K  S  A  Y  E  N  L  S  A  L  R  K  G  S  D  E  D  I  S  F  S  L  Q  L  G  G  H  E  S  K  R  R  R  S  E  P  P  P  S  A  D  E  P  E  *  F  S  P  F  I  C  W  Y  I  *  L  *  G  L  P  W  K  G  N  A  F  C  V  W  F  *  N  K  K  E  V  Q  F  G  F  *  G  A  K  F  S  S  Y  G  H  *  W  Q  P  V  Y  E  E  F  C  I  *  T  S  Q  *  C  K  I  Q  L  *  N  T  C  K  L  K  M  R  L  L  S  *  A  I  L  I  H  G  S  M  Q  *  T  *  K  F  A  F  D  V  Y  L  C  W  I  C  *  E  T  K  C  L  Y  I  Y  I  Y  V  L  Q </first_frame>
            <second_frame>  H  T  L  Q  Y  L  Q  *  R  E  K  Y  N  T  L  N  T  G  A  S  H  G  V  A  W  V  *  L  C  L  Q  P  F  V  F  L  S  Q  F  H  I  E  F  R  L  L  V  *   : E  I  W  I  E  Q  G  *  I  K  E  P  I  A  Q  V  Q  H  R  Q  R  S  Q  P  *  I  L  K  N  T  V  A  V  I  L  I  F  L  H  L  V  H  Q  H  F  N  L  M  H  R  L  D  N  T  L  R  V  M  L  H  T  S  P  G  L  V  G  *  M  M  L  L  K  R  E  Q  T  I  S  E  I  F  R  K  G  F  C  Q  K  L  L  A  D  C  P  R  G  S  E  Q  Q  P  Y  L  T  S  *  L  *  G  H  L  I  A  N  S  C  V  A  T  V  S  V  Q  Q  L  V  F  V  F  D  V  V  F  *  L  I  Y  Q  Q  Y  *  C  L  Y  P  G  K  F  T  N  N  G  L  V  Q  S  S  V  Y  L  L  L  *  R :   A  L  E  V  C  G  V  K  W  M  W  S  S  S  P  I  L  V  H  Q  S  Q  H  P  R  S  S  C  T  Q  R  *  S  M  T  C  G  V  V  T  H  I  L  V  Q  D  L  R :   *  Q  A  R  R  H  M  E  P  W  A  L  L  *  G  V  C  Q  A  I  D  K  L  V  S  *  Q  T  G  M  L  L  L  T  *  I  T  Q  I  K  K  C  F  I  L  Y  L  Q  H  *  D  L  E  Y  I  W  V  Q  W  R  E  L  H  L  L  S  E  T  T  F  G  M  A  Y  L  L  A  *  I  Q  :  R  H  L  S  G  Q  M  V  H  S  F  L  S  Q  M  I  L  I  *  P  L  L  L  L  L  L  R  A  *  G  K  L  E  M  S  K  L  *  I  C  N  L  L  L  V  V  S  S  E  S  K  *  R  R  S  E  E  A  L  D  *  L  Q  A  L  S  W  H  M  P  L  N  I  M  M  R  K  G  F  A  S  *  L  I  F  L  S  M  E  K  T  S  R  L  L  T  L  K  E  T  V  E  V  *  S  F  *  R  V  R  M  G  K  N  P  D  Q  L  V  L  F  G  V  E  L  Q  I  G  D  G  L  N  *  R  W  D  N  L  Q  K  I  G  L  V  E  L  T  L  G  V  C  S  I  S  L  N  L  I  S  L  P  K  M  K  L  *  K  :  L  Q  C  K  N  R  E  L  P  L  P  Q  W  W  A  L  R  L  G  I  L  H  L  L  I  *  C  F  Q  R  T  K  *  S  L  L  G  F  T  F  N  K  F  P  W  K  M  A  L  V  A  L  I  *  T  L  H  L  W  K  L  H  L  T  W  K  K  V  G  S  T  L  M  Q  V  L  N  I  N  S  F  Q  A  S  M  G  N  L  R  L  I  K  T  T  I  V  I  S  Q  H  T  R  I  S  Q  L  L  G  K  A  L  M  K  T  S  A  F  P  C  S  W  V  V  M  N  P  R  E  D  V  Q  S  L  H  Q  A  Q  M  N  Q  N  D  F  L  L  L  S  A  G  T  F  N  F  E  V  F  H  G  K  E  M  H  F  V  F  G  S  K  T  R  K  R  S  N  L  V  F  E  V  L  N  F  H  H  M  A  I  D  G  N  L  C  M  K  S  S  V  F  E  H  L  S  S  A  K  S  N  C  K  I  H  A  S  *  K  *  G  C  F  L  E  L  F  *  F  M  A  P  C  S  R  H  K  N  L  P  L  M  Y  I  Y  A  G  Y  V  K  K  P  S  V  Y  I  Y  I  Y  M  Y  C   </second_frame>
            <third_frame>   T  L  S  N  T  C  S  E  E  K  N  I  I  L  L  T  L  G  P  L  M  A  *  R  G  F  D  Y  V  C  S  L  L  F  S  F  P  N  F  I  S  S  L  G  C  L  C  E  :  K  Y  G  S  S  K  V  K  *  K  N  P  L  L  R  F  N  T  V  R  G  V  S  L  R  S  *  K  I  L  L  Q  L  F  *  S  S  F  T  *  S  T  N  T  S  T  L  C  I  G  W  T  T  L  *  E  *  C  C  I  L  L  L  A  *  S  A  K  *  C  C  *  R  E  S  K  L  F  R  K  S  S  E  R  G  F  A  R  N  S  W  P  I  A  R  G  A  A  S  N  N  L  T  *  P  H  D  Y  K  G  I  S  *  Q  T  L  A  L  L  Q  S  R  Y  S  N  W  F  S  Y  S  T  W  C  F  D  *  Y  T  S  N  T  S  V  C  I  P  E  S  S  Q  T  M  A  *  S  N  P  V  S  T  Y  C  F  R   : G  P  W  R  C  V  V  *  S  G  C  G  R  V  L  L  F  W  C  T  R  A  N  T  Q  G  A  V  V  H  R  D  S  R  *  P  A  G  *  *  P  I  Y  W  F  R  I  S   : G  S  K  P  G  D  I  W  N  L  G  R  Y  C  E  E  S  V  R  Q  S  T  S  W  F  P  N  K  P  A  C  C  C  *  L  R  L  P  K  S  K  N  V  S  S  F  T  S  N  I  R  T  W  S  I  S  G  F  S  G  E  S  Y  I  F  Y  Q  R  R  P  L  V  W  H  I  C  W  H  K  S  R :   D  I  C  Q  G  R  W  C  I  H  S  F  H  R  *  F  *  Y  D  L  C  Y  Y  F  C  *  G  H  R  G  N  W  R  C  Q  N  Y  R  F  A  I  S  Y  *  *  S  H  R  K  A  S  D  E  G  R  K  K  L  W  I  D  Y  R  H  C  L  G  I  C  P  *  I  *  *  *  E  R  D  L  L  L  D  *  F  S  C  Q  W  R  K  P  A  D  F  *  P  *  R  R  Q  W  K  F  N  R  F  E  G  *  E  W  G  K  T  P  T  N  W  Y  Y  L  G  W  N  C  K  *  G  T  A  *  T  K  G  G  T  I  S  R  K  L  D  *  W  S  *  P  W  A  S  A  Q  F  P  *  T  *  Y  H  Y  Q  R  *  S  S  K  S :   C  S  A  R  T  E  S  C  L  C  H  N  G  G  L  Y  G  W  G  F  F  T  S  *  Y  N  A  S  K  G  Q  N  R  A  S  W  A  S  H  S  T  N  S  L  G  R  W  H  W  W  P  *  Y  K  L  F  T  C  G  S  Y  I  *  L  G  R  K  W  D  Q  L  *  C  K  C  *  T  S  I  H  S  K  L  Q  W  A  T  S  G  *  S  R  R  P  S  *  *  V  S  I  R  E  S  L  S  S  *  E  R  L  *  *  R  H  Q  L  F  L  A  V  G  W  S  *  I  Q  E  K  T  F  R  A  S  T  K  R  R  *  T  R  M  I  F  S  F  Y  L  L  V  H  L  T  L  R  S  S  M  E  R  K  C  I  L  C  L  V  L  K  Q  E  R  G  P  I  W  F  L  R  C  *  I  F  I  I  W  P  L  M  A  T  C  V  *  R  V  L  Y  L  N  I  S  V  V  Q  N  P  I  V  K  Y  M  Q  A  K  N  E  A  A  F  L  S  Y  F  D  S  W  L  H  A  V  D  I  K  I  C  L  *  C  I  F  M  L  D  M  L  R  N  Q  V  F  I  Y  I  Y  I  C  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41141" stop="41128"/>
                    <exon start="40012" stop="39520"/>
                    <exon start="39201" stop="39058"/>
                    <exon start="38246" stop="38006"/>
                    <exon start="36966" stop="36466"/>
                    <exon start="35499" stop="35075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1815</number_coding_nucleotides>
                  <number_encoded_amino_acids>605</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AACVRNMDRARLNKRTHCSGSTPSEESALDLEKYCCSYSNLPSLSPPTLQPYASAGQHSESNAAYFSWPSRLNDAAEERANYFGNLQKGVLPETLGRLPEGQRATTLLDLMTIRASHSKLLRCYSLGTAIGFRIRRGVLTDIPAILVFVSRKVHKQWLSPIQCLPTALEGPGGVWCEVDVVEFSYFGAPEPTPKEQLYTEIVDDLRGSDPYIGSGSQVASQETYGTLGAIVRSLSGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGSVERATSFIRDDLWYGIFAGINPETFVRADGAFIPFTDDFDMTSVTTSVKGIGEIGDVKIIDLQSPISSLIGKQVTKVGRSSGLTTGTVLAYALEYNDEKGICFLTDFLVNGENQQTFDLEGDSGSLIVLKGENGEKPRPIGIIWGGTANRGRLKLKVGQSPENWTSGVDLGRLLNFLELDIITKDEALKVAVQEQRAASATMVGSTAGDSSPPDIMLPKDKIEPLGLHIQQIPLEDGIGGPDINSSPVEATFNLEESGINFDASVEHQFIPSFNGQPPANQDDHRDKSAYENLSALRKGSDEDISFSLQLGGHESKRRRSEPPPSADEPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41112" e_stop="40558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="41112" e_stop="40558" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41112" stop="40558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</gDNA_template>
            <first_frame> F  F  F  L  S  K  N  P  S  L  L  R  L  I  F  L  F  S  L  S  L  L  H  A  E  I  S  S  H  A  H  V  F  F  L  N  F  P  G  P  H  *  F  C  S  L  N  L  Y  C  A  Q  S  L  S  K  *  V  L  F  Q  Y  Y  C  I  Y  Y  P  F  F  L  S  S  V  S  F  H  F  S  C  S  W  F  C  C  F  S  L  V  I  Y  V  W  L  R  T  F  C  F  Y  F  R  C  W  R  N  R  I  Y  W  T  S  P  S  L  G  L  K  H  S  Y  *  H  I  V  D  *  L  W  L  L  L  N  L  L  S  I  S  V  E  K  D  T  C  F  L  R  A  M  L  I  V  E  A  V  L  S  S  Y  E  V  H  S  F  R  F  *  S  S  *  E  K  *  C  D  G  *  Y  C  C  K  L  W  L  T </first_frame>
            <second_frame>  F  F  S  S  R  R  I  H  H  Y  C  D  *  S  S  F  F  H  F  L  F  F  M  Q  R  Y  L  H  T  P  M  F  F  F  *  I  F  Q  D  P  I  N  F  V  P  S  I  C  T  V  H  N  R  Y  Q  N  K  C  F  F  N  I  T  V  F  I  I  R  F  S  S  Q  V  F  L  F  T  F  P  V  P  G  F  V  A  F  P  W  L  Y  M  F  G  *  E  L  F  V  F  I  S  V  V  G  E  I  G  Y  I  G  P  H  L  V  W  D  *  S  I  V  I  D  I  L  L  I  D  Y  G  C  C  *  T  Y  Y  L  F  L  L  R  K  I  P  V  F  L  G  P  C  *  L  L  R  Q  F  Y  H  L  M  K  F  I  L  S  D  F  K  V  A  E  R  N  D  V  M  D  N  I  V  V  S  C  G  *   </second_frame>
            <third_frame>   F  F  P  L  E  E  S  I  T  I  A  I  D  L  P  F  F  T  F  S  S  S  C  R  D  I  F  T  R  P  C  F  F  F  E  F  S  R  T  P  L  I  L  F  P  Q  F  V  L  C  T  I  V  I  K  I  S  A  F  S  I  L  L  Y  L  L  S  V  F  P  L  K  C  F  F  S  L  F  L  F  L  V  L  L  L  F  L  G  Y  I  C  L  A  E  N  F  L  F  L  F  P  L  L  E  K  *  D  I  L  D  L  T  *  F  G  I  E  A  *  L  L  T  Y  C  *  L  I  M  V  V  V  E  L  I  I  Y  F  C  *  E  R  Y  L  F  S  *  G  H  V  D  C  *  G  S  F  I  I  L  *  S  S  F  F  Q  I  L  K  *  L  R  E  M  M  *  W  I  I  L  L  *  A  V  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41110" stop="40793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPLEESITIAIDLPFFTFSSSCRDIFTRPCFFFEFSRTPLILFPQFVLCTIVIKISAFSILLYLLSVFPLKCFFSLFLFLVLLLFLGYICLAENFLFLFPLLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="42617" PGL_stop="42136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42617" e_stop="42136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="42617" e_stop="42136" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42617" stop="42136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</gDNA_template>
            <first_frame> F  P  S  L  Q  Y  S  S  S  L  Y  H  I  *  V  F  F  *  L  M  K  P  R  R  K  E  E  I  K  R  R  *  R  S  *  I  C  Y  *  G  S  V  R  L  C  Q  G  N  *  E  E  A  H  L  I  V  V  *  G  Q  N  L  Q  E  K  I  F  G  M  W  K  I  I  W  K  I  L  R  Q  F  L  L  A  T  Q  E  G  N  M  S  *  N  Q  N  T  *  A  I  H  Y  *  M  L  *  *  R  N  Q  S  K  S  M  G  K  K  I  I  F  P  L  S  V  K  L  C  F  L  I  I  F  S  G  Y  L  K  M  L  I  L  S  T  L  I  L  I  H  L  R  N  W  L  I  Y  M  L  F  N  V  N  N   </first_frame>
            <second_frame>  F  H  L  C  N  I  H  L  L  Y  I  I  F  K  F  F  F  N  *  *  N  Q  E  G  R  K  K  L  R  E  D  E  E  A  E  F  V  I  E  E  V  *  D  F  V  K  A  T  R  K  K  L  I  L  *  *  F  K  V  K  I  C  K  R  R  F  L  E  C  G  R  *  Y  G  R  F  *  D  N  S  C  W  Q  L  K  K  E  I  C  H  K  I  K  I  L  E  P  S  T  I  E  C  S  N  R  E  I  K  A  K  A  W  G  K  R  S  S  F  R  *  V  *  S  C  A  F  *  S  S  S  L  V  T  *  K  C  *  S  Y  Q  P  *  F  *  F  I  *  G  I  G  *  S  I  C  C  L  M  *  I  I  </second_frame>
            <third_frame>   S  I  S  A  I  F  I  F  S  I  S  Y  L  S  F  F  L  I  N  E  T  K  K  E  G  R  N  *  E  K  M  K  K  L  N  L  L  L  R  K  C  K  T  L  S  R  Q  L  G  R  S  S  S  Y  S  S  L  R  S  K  S  A  R  E  D  F  W  N  V  E  D  N  M  E  D  F  E  T  I  L  V  G  N  S  R  R  K  Y  V  I  K  S  K  Y  L  S  H  P  L  L  N  A  L  I  E  K  S  K  Q  K  H  G  E  K  D  H  L  S  V  K  C  E  V  V  L  F  D  H  L  L  W  L  L  E  N  A  D  P  I  N  L  N  S  D  S  F  E  E  L  A  D  L  Y  V  V  *  C  E  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42531" stop="42148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMKKLNLLLRKCKTLSRQLGRSSSYSSLRSKSAREDFWNVEDNMEDFETILVGNSRRKYVIKSKYLSHPLLNALIEKSKQKHGEKDHLSVKCEVVLFDHLLWLLENADPINLNSDSFEELADLYVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="52408" PGL_stop="43880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52408" e_stop="51999"/>
            <exon e_start="51013" e_stop="50825"/>
            <exon e_start="50698" e_stop="50645"/>
            <exon e_start="49337" e_stop="49227"/>
            <exon e_start="48850" e_stop="48788"/>
            <exon e_start="48639" e_stop="48385"/>
            <exon e_start="47883" e_stop="47737"/>
            <exon e_start="47631" e_stop="47604"/>
            <exon e_start="46708" e_stop="46638"/>
            <exon e_start="45384" e_stop="45325"/>
            <exon e_start="44493" e_stop="44051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.914" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="52408" e_stop="51999" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.914">
            <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51013" e_stop="50825" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50698" e_stop="50645" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49337" e_stop="49227" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48850" e_stop="48788" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48639" e_stop="48385" e_length="255"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47883" e_stop="47737" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.803" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47631" e_stop="47604" e_length="28"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46708" e_stop="46638" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45384" e_stop="45325" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44493" e_stop="44051" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52408" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC : GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG : GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG : GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG : GAAACCAAAGCATGGACCATCCTCACAG : GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG : GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG : TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTA</gDNA_template>
            <first_frame> L  F  H  F  P  K  F  L  G  S  N  T  I  L  V  Q  L  F  G  *  F  S  N  L  H  V  A  S  S  L  S  *  T  R  E  I  F  V  V  V  A  R  R  *  I  A  A  T  L  C  V  P  L  N  K  H  F  N  L  L  V  V  K  W  R  E  W  L  A  L  S  F  F  L  P  W  Q  F  R  S  S  L  L  S  S  M  V  L  L  T  S  G  Y  D  S  Q  N  L  R  I  L  W  Y  S  S  K  G  A  S  P  S  L  R  *  A  *  V  C  E  L  A  S  L  A  F  L  M  S  A  S  P  R  C  S  T  P  S :   L  R  M  E  R  L  R  L  L  I  F  L  F  A  Q  *  S  Q  M  *  G  *  S  L  S  L  I  H  V  S  M  F  F  L  I  *  A  N  P  N  E  R  S  R  L  R  *  S  L  L  I  L  L  D  L  *  R  E  P  V  K  G  R :   A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   R  K  Q  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R :   L  S  L  S  Y  L  N  F  L  *  K  K  E  *  N  I  *  N  R  L  V  S  M  K  V  A  L  E  I  S  S  E  K  L  M  V  S  *  G  C  V  H  T  S  L  L  A  R  R :   K  P  K  H  G  P  S  S  Q  :  E  *  L  L  L  K  Q  L  G  L  F  T  P  T  L  K  R  A  S  S  G  Q  R  R :   L  L  T  M  T  L  F  L  L  V  L  L  Q  L  Q  G  R  K  D  C :   *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  </first_frame>
            <second_frame>  C  F  I  F  P  N  F  W  A  Q  I  Q  F  W  C  N  Y  L  G  N  F  L  I  Y  M  *  R  R  R  *  V  K  P  E  K  Y  L  *  L  *  H  G  D  R  *  P  Q  R  C  V  Y  H  S  I  S  T  S  T  C  *  W  *  N  G  E  N  G  L  L  S  A  S  S  F  H  G  N  S  A  Q  V  F  F  P  Q  W  F  F  S  P  V  V  T  T  L  R  I  Y  A  S  C  G  T  H  Q  K  A  L  L  R  R  *  D  K  H  E  F  A  S  W  H  R  W  P  S  *  C  R  Q  V  H  A  V  Q  R  R   : R  *  E  W  K  G  S  G  C  *  F  S  F  L  H  N  R  A  K  C  R  D  S  R  C  P  *  Y  T  S  P  C  S  F  *  Y  K  Q  I  Q  T  S  G  P  G  F  D  R  V  C  *  Y  C  W  T  C  K  G  S  Q  S  R  G   : G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : G  G  S  R  K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A   : G  *  V  *  A  I  *  T  S  F  R  R  K  N  R  I  F  E  I  A  W  C  Q  *  K  W  P  W  K  S  H  Q  R  N  L  W  S  P  R  V  A  Y  I  L  H  F  W  R  E   : G  N  Q  S  M  D  H  P  H  R :   N  D  C  S  S  S  S  W  G  Y  S  L  R  L  *  K  G  L  H  Q  G  R  D   : G  C  L  R  *  L  C  F  C  W  F  F  C  S  C  K  G  E  R  T   : V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V </second_frame>
            <third_frame>   V  S  F  S  Q  I  F  G  L  K  Y  N  F  G  A  I  I  W  V  I  F  *  F  T  C  S  V  V  A  E  L  N  P  R  N  I  C  S  C  S  T  A  I  D  S  R  N  A  V  C  T  T  Q  *  A  L  Q  L  A  S  G  K  M  A  R  M  A  C  S  Q  L  L  P  S  M  A  I  P  L  K  S  S  F  L  N  G  S  S  H  Q  W  L  R  L  S  E  S  T  H  P  V  V  L  I  K  R  R  F  S  V  A  K  I  S  M  S  L  R  A  G  I  V  G  L  P  N  V  G  K  S  T  L  F  N  A  V  :  V  E  N  G  K  A  Q  A  A  N  F  P  F  C  T  I  E  P  N  V  G  I  V  A  V  P  D  T  R  L  H  V  L  S  D  I  S  K  S  K  R  A  V  P  A  S  I  E  F  V  D  I  A  G  L  V  K  G  A  S  Q  G  E  :  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  E  E  A  E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  :  V  E  S  E  L  S  E  L  P  L  E  E  R  I  E  Y  L  K  S  L  G  V  N  E  S  G  L  G  N  L  I  R  E  T  Y  G  L  L  G  L  R  T  Y  F  T  S  G  E  K  :  E  T  K  A  W  T  I  L  T   : G  M  T  A  P  Q  A  A  G  V  I  H  S  D  F  E  K  G  F  I  R  A  E  T  :  V  A  Y  D  D  F  V  S  A  G  S  F  A  A  A  R  E  K  G  L  :  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52244" stop="51999"/>
                    <exon start="51013" stop="50825"/>
                    <exon start="50698" stop="50645"/>
                    <exon start="49337" stop="49227"/>
                    <exon start="48850" stop="48788"/>
                    <exon start="48639" stop="48385"/>
                    <exon start="47883" stop="47737"/>
                    <exon start="47631" stop="47604"/>
                    <exon start="46708" stop="46638"/>
                    <exon start="45384" stop="45325"/>
                    <exon start="44493" stop="44425"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLASGKMARMACSQLLPSMAIPLKSSFLNGSSHQWLRLSESTHPVVLIKRRFSVAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDTRLHVLSDISKSKRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKEEAEKSALEKIQQALLDGKPARSVSLSEFEKDAITQLCLLTMKPVIFVANVAESEVAEPENNPHVKEVIKKAAELNSGVVTISAQVESELSELPLEERIEYLKSLGVNESGLGNLIRETYGLLGLRTYFTSGEKETKAWTILTGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVSAGSFAAAREKGLLRLEGKDYVVQEGDIMLFRFNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45065" e_stop="43880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45065" e_stop="43880" e_length="1186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45065" stop="43880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</gDNA_template>
            <first_frame> Y  L  K  C  L  E  E  S  V  K  T  *  D  S  *  L  Q  C  N  F  K  N  R  *  I  F  K  V  T  V  N  K  L  N  I  S  I  L  A  V  K  K  V  Y  F  K  K  K  T  L  K  I  T  L  E  S  I  F  G  L  *  A  H  A  V  V  T  L  K  Y  L  P  E  A  K  S  L  A  K  H  K  *  R  I  H  G  C  F  W  C  H  F  L  I  I  V  N  W  N  L  F  K  F  F  S  E  P  L  S  S  Q  *  P  S  Y  F  G  S  S  T  S  K  L  N  V  H  C  L  P  Y  P  Q  I  V  M  R  L  L  I  S  C  N  F  Y  *  *  V  V  F  F  H  K  D  N  Y  L  C  S  R  M  *  T  V  L  L  C  E  H  *  V  Y  *  P  V  Q  T  R  E  *  I  K  L  V  T  G  F  I  C  V  C  S  *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  R  T  F  V  S  L  M  S  S  E  L  S  K  Q  S  A  F  I  *  F  Y  S  L  K  A  *  L  H  K  F  L  I  A  H  F  S  C  *  F  H  L  C  E  S  I  N  K  *  I  L  E  A  *  P  N  K  D  </first_frame>
            <second_frame>  T  *  N  V  S  R  N  Q  L  K  L  K  T  R  D  C  S  V  I  S  K  I  D  K  Y  L  K  *  R  *  I  S  *  I  F  Q  F  *  L  L  K  K  F  I  L  K  K  K  P  L  K  *  P  *  S  L  S  L  A  C  K  H  M  Q  W  L  H  *  N  T  F  P  K  Q  K  A  *  P  N  T  N  K  E  S  M  V  V  F  G  V  I  S  *  L  L  S  I  G  T  F  L  N  F  L  V  N  H  Y  H  L  N  N  L  L  T  L  A  P  A  L  Q  N  *  M  F  I  A  S  P  I  P  K  L  *  *  G  C  *  S  H  V  T  F  T  S  K  *  F  S  F  T  K  I  I  T  C  V  V  E  C  K  R  C  F  Y  V  S  T  K  S  T  D  P  C  K  Q  E  N  R  S  S  W  L  Q  D  L  S  V  Y  A  V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V  E  L  L  S  V  *  *  V  L  N  C  P  N  S  P  H  S  Y  N  S  I  A  *  K  L  S  C  I  N  F  S  L  L  I  F  L  V  D  F  I  C  V  R  A  *  I  N  R  S  W  K  L  D  Q  T  R  I </second_frame>
            <third_frame>   P  E  M  S  R  G  I  S  *  N  L  R  L  V  I  A  V  *  F  Q  K  *  I  N  I  *  S  N  G  K  *  A  K  Y  F  N  F  S  C  *  K  S  L  F  *  K  K  N  P  *  N  N  L  R  V  Y  L  W  L  V  S  T  C  S  G  Y  I  K  I  P  S  R  S  K  K  L  S  Q  T  Q  I  K  N  P  W  L  F  L  V  S  F  P  D  Y  C  Q  L  E  P  F  *  I  F  *  *  T  I  I  I  S  I  T  F  L  L  W  L  Q  H  F  K  I  K  C  S  L  P  P  L  S  P  N  C  N  E  V  A  N  L  M  *  L  L  L  V  S  S  F  L  S  Q  R  *  L  L  V  *  *  N  V  N  G  A  S  M  *  A  L  S  L  L  T  R  A  N  K  R  I  D  Q  A  G  Y  R  I  Y  L  C  M  Q  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K  *  N  F  C  Q  F  D  E  F  *  I  V  Q  T  V  R  I  H  I  I  L  *  L  E  S  L  A  A  *  I  S  H  C  S  F  F  L  L  I  S  F  V  *  E  H  K  *  I  D  L  G  S  L  T  K  Q  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44623" stop="44318"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFTKIITCVVECKRCFYVSTKSTDPCKQENRSSWLQDLSVYAVEVRRKRLCCARRGYNAVPVQCLIEKQLVKEISRIFMLCSRLFEPFRFLRQQILLQEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="65144" PGL_stop="67480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65144" e_stop="65316"/>
            <exon e_start="65405" e_stop="65590"/>
            <exon e_start="66336" e_stop="66515"/>
            <exon e_start="67260" e_stop="67480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.124" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65144" e_stop="65316" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65405" e_stop="65590" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.729" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66336" e_stop="66515" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.124">
            <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="67260" e_stop="67480" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65144" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66515"/>
              <exon start="67260" stop="67480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG : ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG : GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG : AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</gDNA_template>
            <first_frame> *  H  S  *  N  R  A  T  V  L  L  Y  A  E  E  L  A  R  *  L  L  A  E  E  V  *  F  L  H  S  R  R  F  Q  M  M  Q  R  S  F  S  Y  A  Q  E  T  P  F  L  F  L  A  P  P  Q  A  Y  R :   L  L  N  W  K  V  I  G  D  W  *  H  R  W  W  *  Y  H  L  L  L  R  Q  A  N  Y  C  A  T  A  G  L  H  L  R  M  V  L  L  N  I  G  T  F  P  C  R  S  *  *  E  V  L  M  L  S  C  P  F  T  Q  W :   *  F  Q  V  Y  H  Q  N  S  E  R  V  A  K  S  L  L  I  F  L  H  M  C  L  S  *  C  *  K  N  S  W  E  G  A  V  L  Y  G  G  R  *  G  S  V  T  *  L  N  V  L  W  L  V  E  *  L  W  L  R :   V  K  T  H  Y  L  *  H  *  A  A  L  E  D  T  W  A  S  V  T  S  A  S  F  A  F  G  K  Y  Q  L  K  I  L  I  I  Q  C  F  R  T  S  D  Y  I  I  R  K  P  *  A  L  *  L  F  I  Q  Q  I  E  *  F  Q  L  E  M  *  Q  E  G  S  *  Y  </first_frame>
            <second_frame>  N  T  H  K  T  E  P  L  F  F  F  T  Q  R  S  *  Q  D  D  Y  W  R  K  K  F  D  F  F  T  A  G  V  F  K  *  C  K  E  A  S  R  M  H  R  K  H  R  F  Y  F  *  H  L  H  R  L  T   : D  C  *  I  G  R  S  *  G  I  G  N  I  G  G  G  S  T  I  Y  Y  S  G  R  Q  T  I  V  L  L  L  D  F  I  *  G  W  Y  Y  *  I  L  G  L  F  R  A  G  A  N  E  K  Y  *  C  *  V  A  H  L  L  N   : G  N  S  R  F  I  I  R  T  Q  R  E  *  R  K  A  F  *  S  F  C  I  C  V  C  H  S  V  E  R  T  A  G  R  E  L  C  F  M  V  A  D  K  E  V  *  L  N  *  M  Y  F  G  W  W  S  D  S  G  *   : E  *  K  R  T  I  Y  N  I  K  L  L  W  K  I  H  G  R  L  *  Q  A  Q  A  S  H  L  G  N  T  N  *  R  F  *  S  F  S  A  S  E  H  Q  I  T  S  Y  E  N  P  E  H  S  S  F  S  S  N  R  *  N  S  F  S  W  R  C  N  R  K  D  L  N  M </second_frame>
            <third_frame>   T  L  I  K  Q  S  H  C  S  S  L  R  R  G  A  S  K  M  I  T  G  G  R  S  L  I  S  S  Q  P  A  F  S  N  D  A  K  K  L  L  V  C  T  G  N  T  V  S  I  F  S  T  S  T  G  L  Q  :  I  A  E  L  E  G  H  R  G  L  V  T  S  V  V  V  V  P  S  T  T  P  A  G  K  L  L  C  Y  C  W  T  S  S  E  D  G  T  I  K  Y  W  D  F  S  V  P  E  L  M  R  S  I  D  V  K  L  P  I  Y  S  M  :  V  I  P  G  L  S  S  E  L  R  E  S  S  E  K  P  S  D  L  F  A  Y  V  S  V  I  V  L  K  E  Q  L  G  G  S  C  A  L  W  W  Q  I  R  K  C  N  L  T  K  C  T  L  V  G  G  V  T  L  A  E  :  S  K  N  A  L  S  I  T  L  S  C  S  G  R  Y  M  G  V  C  D  K  R  K  L  R  I  W  E  I  P  T  K  D  S  D  H  S  V  L  Q  N  I  R  L  H  H  T  K  T  L  S  T  L  A  F  H  P  T  D  R  I  V  S  A  G  D  V  T  G  R  I  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65146" stop="65316"/>
                    <exon start="65405" stop="65590"/>
                    <exon start="66336" stop="66515"/>
                    <exon start="67260" stop="67478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIKQSHCSSLRRGASKMITGGRSLISSQPAFSNDAKKLLVCTGNTVSIFSTSTGLQIAELEGHRGLVTSVVVVPSTTPAGKLLCYCWTSSEDGTIKYWDFSVPELMRSIDVKLPIYSMVIPGLSSELRESSEKPSDLFAYVSVIVLKEQLGGSCALWWQIRKCNLTKCTLVGGVTLAESKNALSITLSCSGRYMGVCDKRKLRIWEIPTKDSDHSVLQNIRLHHTKTLSTLAFHPTDRIVSAGDVTGRILI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="71706" PGL_stop="75961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71706" e_stop="71742"/>
            <exon e_start="72032" e_stop="72161"/>
            <exon e_start="72551" e_stop="72683"/>
            <exon e_start="73712" e_stop="73878"/>
            <exon e_start="74317" e_stop="74509"/>
            <exon e_start="75311" e_stop="75961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71706" e_stop="71742" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72032" e_stop="72161" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72551" e_stop="72683" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73712" e_stop="73878" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.979">
            <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74317" e_stop="74509" e_length="193"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74510" i_stop="75310" i_length="801"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="75311" e_stop="75961" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71706" stop="71742"/>
              <exon start="72032" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74509"/>
              <exon start="75311" stop="75961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA : GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG : CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG : CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG : GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG : GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATAAGCGCAATAGAGTTGCTATTTAAAT</gDNA_template>
            <first_frame> T  L  D  G  H  A  I  L  L  V  P  I   : R  K  S  Q  *  Q  L  L  P  F  L  E  M  V  L  F  W  L  *  L  Q  K  K  L  L  H  C  G  I  R  R  G  I  F  L  *  L  Q  L  G  R  V  L  S :   Q  S  L  P  *  H  L  L  G  S  Q  S  M  W  *  P  H  R  K  V  L  R  L  K  Y  Q  C  G  A  C  Q  S  C  L  Y  H  G  L  T  N  L  R  *  K  :  L  *  L  V  R  W  M  I  P  C  L  P  S  W  P  F  S  Q  S  Q  L  D  L  *  C  L  M  K  P  Q  L  W  M  A  M  E  *  S  C  Y  S  G  P  Q  I  M  F  P  *  G  S  G  L  *  E  R :   Q  K  V  L  H  L  L  S  F  A  E  V  L  S  Q  R  M  M  L  L  M  A  D  Q  C  S  C  Y  *  L  T  S  A  L  I  M  N  I  C  F  L  I  H  S  T  A  T  P  I  Y  I  R  *  A  E  E  I  L  L  I  L  R  K  Q  :  G  S  S  D  M  H  L  C  T  G  T  Y  Q  T  L  A  *  R  E  N  K  L  H  R  S  H  Q  Y  H  Q  K  D  I  G  R  R  Y  S  V  D  H  L  T  I  F  L  L  L  L  N  C  V  P  H  S  W  N  H  Y  Y  R  R  V  V  Q  L  S  D  W  Q  *  C  P  V  E  L  C  C  K  A  D  L  L  I  Y  A  H  R  *  N  D  N  I  V  V  R  L  D  P  I  V  A  E  R  E  L  P  D  M  H  M  H  M  H  I  V  I  L  A  R  K  C  E  Q  W  G  R  L  I  I  W  S  K  N  E  P  A  R  S  V  K  A  F  E  F  K  K  K  M  P  *  S  S  G  F  K  I  L  V  A  R  F  D  V  S  S  G  Y  *  I  F  C  S  L  Q  L  I  E  P  A  G  L  S  R  H  T  Q  Y  *  I  D  V  L  F  *  Q  Y  L  V  M  C  C  V  *  L  *  H  L  *  A  Q  *  S  C  Y  L  N </first_frame>
            <second_frame>  R  W  M  D  M  P  F  C  W  F  L  *  :  E  K  A  N  D  S  C  C  L  F  W  R  W  F  C  S  G  C  S  C  R  K  S  Y  Y  I  V  G  S  G  E  E  Y  S  C  S  Y  S  W  G  E  S  *   : A  N  L  F  L  S  I  Y  W  E  V  R  V  C  G  N  H  I  A  R  F  *  G  S  S  I  S  V  E  H  V  K  A  V  C  I  M  V  L  Q  T  *  D  R  S :   C  N  L  C  D  G  *  F  L  V  C  R  P  G  P  S  P  K  A  S  W  T  C  D  V  *  *  S  H  N  S  G  W  R  W  S  D  L  V  I  Q  G  H  R  S  C  S  R  R  D  L  V  C  K  K   : G  K  R  C  F  T  C  F  H  S  R  K  S  *  V  R  G  *  C  Y  *  W  Q  I  S  A  V  A  I  S  L  P  Q  R  *  S  *  I  Y  A  F  *  S  T  R  R  P  H  P  Y  T  *  D  K  P  R  K  S  C  *  S  *  G  N  R :   E  V  R  I  C  I  S  V  R  G  P  T  R  L  *  L  R  E  K  T  S  C  I  D  H  I  S  T  I  R  K  I  L  G  D  A  I  Q  W  T  I  S  Q  S  S  S  S  C  *  I  V  F  H  I  P  G  I  I  T  T  E  E  *  C  S  *  V  I  G  S  S  V  R  L  S  F  V  A  R  Q  T  C  *  S  M  L  I  D  E  T  T  T  L  L  L  G  L  I  P  L  *  P  R  E  S  C  L  T  C  T  C  T  C  T  *  *  Y  *  L  E  S  V  N  S  G  V  D  L  *  S  G  L  R  T  S  Q  P  V  Q  L  K  L  S  S  S  R  K  R  C  P  D  R  V  G  L  K  F  W  *  H  D  L  M  C  R  L  D  I  E  F  F  V  A  C  N  L  L  S  L  Q  G  *  V  G  I  L  N  T  E  *  M  F  F  F  D  N  I  W  S  C  V  V  F  N  Y  N  I  Y  K  R  N  R  V  A  I  *   </second_frame>
            <third_frame>   A  G  W  T  C  H  S  V  G  S  Y  K :   K  K  P  M  T  A  A  A  F  S  G  D  G  S  V  L  A  V  A  A  E  K  V  I  T  L  W  D  P  E  R  N  I  L  V  A  T  V  G  E  S  L  E  :  P  I  S  S  L  A  F  I  G  K  S  E  Y  V  V  T  T  S  Q  G  S  K  A  Q  V  S  V  W  S  M  S  K  L  S  V  S  W  S  Y  K  L  K  I  E   : A  V  T  C  A  M  D  D  S  L  F  A  V  L  A  L  L  P  K  P  V  G  P  V  M  S  N  E  A  T  T  L  D  G  D  G  V  I  L  L  F  R  A  T  D  H  V  P  V  G  I  W  F  V  R  K  :  A  K  G  A  S  L  A  F  I  R  G  S  P  K  S  E  D  D  V  T  D  G  R  S  V  Q  L  L  L  A  Y  L  S  V  D  H  E  Y  M  L  F  D  P  L  D  G  H  T  H  I  H  K  I  S  R  G  N  L  A  D  L  E  E  T   : G  K  F  G  Y  A  S  L  Y  G  D  L  P  D  F  S  L  E  R  K  Q  A  A  S  I  T  S  V  P  S  E  R  Y  W  E  T  L  F  S  G  P  S  H  N  L  P  P  L  A  K  L  C  S  T  F  L  E  S  L  L  Q  K  S  S  A  V  E  *  L  A  V  V  S  G  *  A  L  L  Q  G  R  L  A  N  L  C  S  S  M  K  R  Q  H  C  C  *  A  *  S  H  C  S  R  E  R  A  A  *  H  A  H  A  H  A  H  S  N  T  S  S  K  V  *  T  V  G  S  T  Y  N  L  V  *  E  R  A  S  P  F  S  *  S  F  R  V  Q  E  K  D  A  L  I  E  W  V  *  N  F  G  S  T  I  *  C  V  V  W  I  L  N  F  L  *  L  A  T  Y  *  A  C  R  A  K  *  A  Y  S  I  L  N  R  C  S  F  L  T  I  F  G  H  V  L  C  L  I  I  T  F  I  S  A  I  E  L  L  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71708" stop="71742"/>
                    <exon start="72032" stop="72161"/>
                    <exon start="72551" stop="72683"/>
                    <exon start="73712" stop="73878"/>
                    <exon start="74317" stop="74509"/>
                    <exon start="75311" stop="75513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGWTCHSVGSYKKKPMTAAAFSGDGSVLAVAAEKVITLWDPERNILVATVGESLEPISSLAFIGKSEYVVTTSQGSKAQVSVWSMSKLSVSWSYKLKIEAVTCAMDDSLFAVLALLPKPVGPVMSNEATTLDGDGVILLFRATDHVPVGIWFVRKAKGASLAFIRGSPKSEDDVTDGRSVQLLLAYLSVDHEYMLFDPLDGHTHIHKISRGNLADLEETGKFGYASLYGDLPDFSLERKQAASITSVPSERYWETLFSGPSHNLPPLAKLCSTFLESLLQKSSAVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="78229" PGL_stop="78738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78229" e_stop="78738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="78229" e_stop="78738" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78229" stop="78738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</gDNA_template>
            <first_frame> G  N  V  G  H  A  M  Q  L  V  D  K  M  E  E  Y  G  Y  P  T  N  T  V  T  Y  N  S  L  I  R  G  L  C  M  R  G  N  L  N  K  S  L  Q  F  V  E  K  L  I  Q  K  G  L  V  P  N  A  Y  T  Y  S  I  L  L  E  A  S  Y  K  E  K  G  V  N  E  A  M  L  L  L  D  N  I  I  A  K  G  G  K  P  N  L  V  S  Y  N  V  L  L  T  G  L  C  K  E  G  R  I  D  E  A  K  Q  F  F  R  N  L  P  S  K  G  F  N  P  N  V  V  S  Y  N  I  L  L  R  S  L  C  F  E  G  R  W  E  E  A  N  E  F  L  A  E  M  V  G  E  D  R  S  P  S  I  V  T  Y  N  I  L  I  S </first_frame>
            <second_frame>  E  M  S  V  M  L  C  N  *  L  I  K  W  R  N  M  D  I  Q  Q  I  L  *  L  T  I  L  L  *  E  D  F  V  *  G  G  T  *  T  R  A  C  N  L  S  K  S  *  F  R  K  G  W  Y  Q  M  H  I  R  T  L  Y  C  L  R  L  V  I  K  K  K  G  L  M  K  Q  C  Y  F  *  T  I  L  L  P  R  V  E  S  L  I  W  L  V  T  M  F  S  *  L  G  C  A  K  K  E  E  *  M  K  L  N  N  S  L  E  T  C  H  Q  K  G  L  I  L  T  L  S  A  I  I  S  C  *  G  A  C  V  L  K  D  V  G  R  K  R  M  S  F  W  Q  R  W  L  E  K  I  V  L  H  R  L  *  R  T  I  Y  *  S   </second_frame>
            <third_frame>   K  C  R  S  C  Y  A  I  S  *  *  N  G  G  I  W  I  S  N  K  Y  C  D  L  Q  F  S  Y  K  R  T  L  Y  E  G  E  P  E  Q  E  P  A  I  C  R  K  V  D  S  E  R  V  G  T  K  C  I  Y  V  L  Y  I  A  *  G  *  L  *  R  K  R  G  *  *  S  N  V  T  F  R  Q  Y  Y  C  Q  G  W  K  A  *  F  G  *  L  Q  C  S  L  N  W  A  V  Q  R  R  K  N  R  *  S  *  T  I  L  *  K  L  A  I  K  R  V  *  S  *  R  C  Q  L  *  Y  L  V  E  E  L  V  F  *  R  T  L  G  G  S  E  *  V  S  G  R  D  G  W  R  R  S  F  S  I  D  C  N  V  Q  Y  I  D  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78229" stop="78738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNVGHAMQLVDKMEEYGYPTNTVTYNSLIRGLCMRGNLNKSLQFVEKLIQKGLVPNAYTYSILLEASYKEKGVNEAMLLLDNIIAKGGKPNLVSYNVLLTGLCKEGRIDEAKQFFRNLPSKGFNPNVVSYNILLRSLCFEGRWEEANEFLAEMVGEDRSPSIVTYNILIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="79114" PGL_stop="79769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79114" e_stop="79769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="79114" e_stop="79769" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79114" stop="79769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</gDNA_template>
            <first_frame> H  G  F  T  P  D  S  Y  T  Y  S  S  L  I  R  G  L  C  L  E  K  M  L  V  A  A  V  D  V  F  Y  M  M  E  E  N  G  Y  R  P  D  V  D  N  F  N  A  L  V  L  G  L  C  K  S  K  R  T  D  L  S  L  K  V  F  E  D  M  I  S  K  G  Y  M  P  N  E  I  T  Y  T  I  I  V  E  G  I  I  H  E  D  H  K  E  L  A  S  V  V  L  R  E  L  H  R  K  E  V  I  S  R  N  T  V  E  R  L  A  M  Q  Y  E  L  E  D  M  A  V  C  *  S  F  T  K  P  M  A  C  G  H  R  M  R  N  *  Q  R  F  F  I  S  K  C  *  I  H  Q  I  N  K  V  I  L  M  L  Y  V  R  W  *  L  Y  T  T  N  K  P  S  G  *  L  V  F  R  Y  G  S  *  F  I  V  G  F  K  *  V  S  G  E  T  C  Q  F  S  L  A  Y  S  C  Y  S  I  A  V  T  K  K  V   </first_frame>
            <second_frame>  T  D  L  L  Q  T  L  T  P  I  L  H  *  S  E  D  Y  A  W  K  R  C  W  W  L  L  S  M  Y  S  T  *  W  K  K  M  D  I  G  L  M  L  T  I  S  M  R  L  C  L  D  Y  A  N  P  K  E  Q  T  C  H  *  R  Y  L  R  T  *  S  A  K  V  I  C  L  M  R  *  H  I  P  L  *  S  K  A  S  S  M  K  I  T  R  S  L  H  Q  *  S  *  G  N  C  T  G  K  K  *  *  V  E  I  L  L  K  D  L  L  C  N  M  S  L  K  I  W  Q  Y  A  D  L  S  Q  N  Q  W  L  V  V  T  G  *  E  T  N  K  G  S  S  L  A  N  A  K  Y  T  K  *  T  K  L  F  S  C  C  M  S  D  G  N  F  T  Q  L  I  N  L  R  D  N  W  F  S  D  M  V  V  D  S  *  *  A  S  N  R  *  V  V  K  L  V  N  S  H  *  L  T  L  A  T  Q  L  L  L  Q  K  K  L  </second_frame>
            <third_frame>   R  I  Y  S  R  L  L  H  L  F  F  I  D  Q  R  I  M  L  G  K  D  V  G  G  C  C  R  C  I  L  H  D  G  R  K  W  I  *  A  *  C  *  Q  F  Q  C  A  C  A  W  T  M  Q  I  Q  K  N  R  L  V  I  K  G  I  *  G  H  D  Q  Q  R  L  Y  A  *  *  D  N  I  Y  H  Y  S  R  R  H  H  P  *  R  S  Q  G  A  C  I  S  S  P  K  G  T  A  P  E  R  S  N  K  *  K  Y  C  *  K  T  C  Y  A  I  *  A  *  R  Y  G  S  M  L  I  F  H  K  T  N  G  L  W  S  Q  D  E  K  L  T  K  V  L  H  *  Q  M  L  N  T  P  N  K  Q  S  Y  S  H  A  V  C  Q  M  V  T  L  H  N  *  *  T  F  G  I  I  G  F  Q  I  W  *  L  I  H  S  R  L  Q  I  G  E  W  *  N  L  S  I  L  T  S  L  L  L  L  L  N  C  C  Y  K  K  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79114" stop="79503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGFTPDSYTYSSLIRGLCLEKMLVAAVDVFYMMEENGYRPDVDNFNALVLGLCKSKRTDLSLKVFEDMISKGYMPNEITYTIIVEGIIHEDHKELASVVLRELHRKEVISRNTVERLAMQYELEDMAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="84074" PGL_stop="87285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84074" e_stop="84314"/>
            <exon e_start="85613" e_stop="85777"/>
            <exon e_start="86065" e_stop="86122"/>
            <exon e_start="87085" e_stop="87285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84074" e_stop="84314" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84315" i_stop="85612" i_length="1298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85613" e_stop="85777" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85778" i_stop="86064" i_length="287"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86065" e_stop="86122" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="86123" i_stop="87084" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87085" e_stop="87285" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84074" stop="84314"/>
              <exon start="85613" stop="85777"/>
              <exon start="86065" stop="86122"/>
              <exon start="87085" stop="87285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG : AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG : TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</gDNA_template>
            <first_frame> *  R  V  P  G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : E  L  D  K  L  L  E  D  A  P  L  P  F  I  M  Q  H  A  A  R  I  S  G  V  R  K  R  I  T  S  L  N  S  L  L  K  S  I  Q  R  R  L  D  N  I  D  H  T  L  S  A  G  L  L  H   : E  K  S  S  G  D  G  G  R  D  H  E  N  H  K  S  S  L  K  S :   S  *  S  K  S  R  R  R  F  K  C  P  S  Q  C  P  *  K  S  P  S  D  C  K  H  L  E  L  I  Q  P  C  G  V  K  G  S  L  M  H  E  V  I  T  H  C  V  L  K  R  C  S  F  T  C  Q  K  I  A  W  F  Q  L  C  A  I   </first_frame>
            <second_frame>  D  E  Y  R  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  S  L  T  S  C  W  K  M  P  H  C  L  L  S  C  S  M  L  P  E  F  L  V  L  G  K  E  L  H  R  *  T  H  F  *  S  L  Y  R  G  V  L  I  I  S  T  T  H  Y  L  L  V  C  Y  M  :  R  S  P  Q  G  M  V  G  E  T  M  R  I  I  S  L  H  *  R   : V  H  D  Q  N  P  G  E  D  S  N  V  L  R  S  A  R  R  N  L  L  L  I  A  S  I  W  N  *  F  S  L  V  V  *  K  V  V  *  C  M  R  L  *  H  T  A  F  *  K  D  V  L  L  P  V  K  K  L  H  G  F  S  S  V  P  Y  </second_frame>
            <third_frame>   T  S  T  G  K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   A  *  Q  A  A  G  R  C  P  I  A  F  Y  H  A  A  C  C  Q  N  F  W  C  *  E  K  N  Y  I  V  E  L  T  F  E  V  Y  T  E  A  S  *  *  Y  R  P  H  I  I  C  W  F  V  T  * :   E  V  L  R  G  W  W  A  R  P  *  E  S  *  V  F  I  E  E  :  F  M  I  K  I  Q  E  K  I  Q  M  S  F  A  V  P  V  E  I  S  F  *  L  Q  A  F  G  T  D  S  A  L  W  C  K  R  *  S  D  A  *  G  Y  N  T  L  R  S  E  K  M  F  F  Y  L  S  K  N  C  M  V  S  A  L  C  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84077" stop="84314"/>
                    <exon start="85613" stop="85777"/>
                    <exon start="86065" stop="86122"/>
                    <exon start="87085" stop="87091"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPGNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGELDKLLEDAPLPFIMQHAARISGVRKRITSLNSLLKSIQRRLDNIDHTLSAGLLHEKSSGDGGRDHENHKSSLKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="91630" PGL_stop="91949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91630" e_stop="91949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="91630" e_stop="91949" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91630" stop="91949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATC</gDNA_template>
            <first_frame> L  F  L  F  I  Y  I  Y  I  P  F  C  N  R  Y  V  N  V  S  S  I  C  M  Y  A  G  N  Y  G  F  S  L  R  *  Q  N  G  Y  V  A  G  E  V  F  G  L  F  S  G  C  E  V  Q  V  I  W  L  V  K  S  K  D  V  I  *  *  G  R  R  S  F  Q  G  C  R  S  *  A  D  E  C  *  K  *  *  G  G  G  I  R  S  R  S  F  E  R  Y  G  R  F  *  V  L  P  *  R   </first_frame>
            <second_frame>  S  F  F  L  Y  I  Y  I  F  H  S  V  I  V  T  L  T  F  L  L  F  V  C  T  P  E  I  M  A  S  A  C  V  N  K  M  G  M  S  P  E  K  F  L  D  C  S  P  A  A  K  Y  K  S  Y  G  W  L  S  P  R  M  S  F  S  R  D  G  E  A  S  K  V  A  G  A  K  Q  T  S  V  E  N  D  K  V  E  E  L  D  P  E  V  S  K  D  M  G  D  F  E  F  C  L  E  D  </second_frame>
            <third_frame>   L  S  F  Y  I  Y  I  Y  S  I  L  *  S  L  R  *  R  F  F  Y  L  Y  V  R  R  K  L  W  L  Q  L  A  L  T  K  W  V  C  R  R  R  S  F  W  I  V  L  R  L  R  S  T  S  H  M  V  G  *  V  Q  G  C  H  L  V  G  T  A  K  L  P  R  L  P  E  L  S  R  R  V  L  K  M  I  R  W  R  N  *  I  Q  K  F  R  K  I  W  A  I  L  S  F  A  L  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91631" stop="91948"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFLYIYIFHSVIVTLTFLLFVCTPEIMASACVNKMGMSPEKFLDCSPAAKYKSYGWLSPRMSFSRDGEASKVAGAKQTSVENDKVEELDPEVSKDMGDFEFCLED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 38224 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2123 bytes was the average size of a spliced alignment
$ 22160 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1704 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 23 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 23:11:18
-->
