<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 00:19:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344278" ref_strand="+" ref_description="SGN-U344278        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to M-type 9 protein (GI:507127) (Streptococcus pyogenes) | chr1:20871584-20873871 REVERSE | Aliases: F20N2.20(evalue: 4e-44, score=175) genbank/nr: HPr(evalue: 1e-43, score=179)">
      <seq>ttttgagtatggacaaggacaacaatcaacttcaccatgtgagcatttgcctcagacgaactgcaagacggaaactttacgagatcaaaaggaaatgcttgtggagaattcagtctcaagctctgttcaattacaagaactgcaagaaaaacttgatttattgaaagcagcagttgaaatggcttctgatcacaaacatcccagtgacttttatgtgaatcagctaaacgatcaggtggaagtgaaaaggggcaaaattgttgaaatggaaagtcactgcattgatagaagcaaggcccttgagcaaaagaaggtttctcttgaggaaaagttaagagcaacaaatccagagacctatgaaaaatataaaaaggtggaagagattgagttgaagttggagaatatattagccgaaaacaaaagaagagaggaagaactcattgtactctcagccaaggctgagaagcagcccaaattacaacctagaagaacctacattcagcgtgttgaagagatcaccaaaaacagccggaagcaggatgtggacatagaaagaatattaaaagaaacaagggagcttcagttagagagcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="6252" stop="4488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5952" g_stop="5898" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5897" i_stop="5671" i_length="227">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5670" g_stop="5447" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="279" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5446" i_stop="5345" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5344" g_stop="5198" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="426" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5197" i_stop="4960" i_length="238">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4959" g_stop="4788" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="598" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U344278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5952" e_stop="5898"/>
          <exon e_start="5670" e_stop="5447"/>
          <exon e_start="5344" e_stop="5198"/>
          <exon e_start="4959" e_stop="4788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAGGTACTTAATTATGAATGGATTGCATTGCTCTTTAGTATATTGTGGTAGACCTTTTACGCTTTGAGCTAGTTGTCCAATAGAGCAGAACAAGCCAATAATTTTTTAATTGGAGCATATAAAGATAACAGAAATAGGGAACAAACAATGATACTATTTGATTTCGTGGTTAGGCATTGGGAAAGCCTCCAACTTGTCGTCTTATCTTCTAAATTCATGCCATATTGCAGACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTGGTAGGATACTGACGTTTCTATATTTTAAACATTTTTACTTATATTTCCCCTATTGAAACTTGGATGATATCAATTGTTAAGCCTTTTTAAAATATTGTACAGCATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAGGTACGATCTTCTATTAGGTCATGCAAAATATCCGTCGTTTGTTAGATTACATAGTTGAACCAAAAGAGAAATTGAGAGAAGAAACTGTACCATTTTTGGTTTTTTATCGTTTGGATTCTTTGACATTTAAGAATTTTCATTACTCATTATGGAAAGGGGTCAAGTTGTGTGGATCTATTTGTATATCCGAGCTTTTAATGCTGCTTTGTTTGAAAGTTTGGTATGCGTAACTCTGCAGAGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</genome_strand>
        <mrna_strand>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAG...................................................................................................................................................................................................................................ACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTG......................................................................................................CATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAG..............................................................................................................................................................................................................................................AGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345118" ref_strand="+" ref_description="SGN-U345118        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G13220.1 | Symbol: None | ABC transporter family protein, contains Pfam profile: PF00005 ABC transporter; similar to white protein GB:Q27256 (Anopheles gambiae) | chr3:4247975-4250710 REVERSE | Aliases: MJG19.25 (evalue: 1e-79, score=293) genbank/nr: Putative(evalue: 3e-78, score=295)">
      <seq>acaagatgaaatcgaggacttgtcgttgtcccttccaactgttggctcaatgcagattgctggaagtaacggttttggacataacatagagttcatgtctcaagcttatcttagaaacagaagctctgaaattgatatagaagttgaacatgatacgtctatcgctcatatagatcaacctcttcccatattcctcaagtttgcaaatgtggagtataaggtgaagactaatcaagctttctccaacaatcctgtcaaggcagttgtctcaaaggtagcttctcagtttgaaaatgataattacaaacatatactcaaaggtataacgggaagcattagtcccggtgaaattcttgccttaatgggaccttcgggcagtggaaaaacgactttgttaaagatactgggtggaagattgcacgaaaatgtcaaaggaaccgtcacttacaatgacattccatatagtccagctctgaaaagaagggtgggtttcgtgacacaagatgatgtgcttttcccacaattgacggttgaggaaactttagtttttgctgcattcttaagacttccatgcaagatgagtcgacgtcagaagtatgaaagagtagaagtgattattaaggaattaggccttgaaagtactttgntatcctttcatgtacttgagtactcactaatagcaactaccgttgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="7432" stop="8932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7732" g_stop="7930" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7931" i_stop="7999" i_length="69">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8000" g_stop="8283" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="483" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8284" i_stop="8417" i_length="134">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8418" g_stop="8632" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="697" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U345118" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7732" e_stop="7930"/>
          <exon e_start="8000" e_stop="8283"/>
          <exon e_start="8418" e_stop="8632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATGAAATCGAGGACTTGTCGTTGTCCCTTCCAACTGTTGGCTCAATGCAGATTGCTGGAAGTAACGGTTTTGGACATAACATAGAGTTCATGTCTCAAGCTTATCTTAGAAACAGAAGCTCTGAAATTGATATAGAAGTTGAACATGATACGTCTATCGCTCATATAGATCAACCTCTTCCCATATTCCTCAAGGTACGATCTTCTTTCATGATATATGCTTACGAGTCGTGGCTTCTGTAATGGGAATGGTTTTGTATGCAGTTTGCAAATGTGGAGTATAAGGTGAAGACTAATCAAGCTTTCTCCAACAATCCTGTCAAGGCAGTTGTCTCAAAGGTAGCTTCTCAGTTTGAAAATGATAATTACAAACATATACTCAAAGGTATAACGGGAAGCATTAGTCCCGGTGAAATTCTTGCCTTAATGGGACCTTCGGGCAGTGGAAAAACGACTTTGTTAAAGATACTGGGTGGAAGATTGCACGAAAATGTCAAAGGAACCGTCACTTACAATGACATTCCATATAGTCCAGCTCTGAAAAGAAGGTGGTACCTATCCATCAATAGAGAAAAAAGTGTTCTTTTAATTGCTGTCTTTAACCAGAGAGTAGATACAAGTTTTTCTTTCAGTGTACATGGATTTGTATTAACTTCAGTTTGCGATATGTGCTTATGTCTAGGGTGGGTTTCGTGACACAAGATGATGTGCTTTTCCCACAATTGACGGTTGAGGAAACTTTAGTTTTTGCTGCATTCTTAAGACTTCCATGCAAGATGAGTCGACGTCAGAAGTATGAAAGAGTAGAAGTGATTATTAAGGAATTAGGCCTTGAAAGGTACTTTGTTATCCTTTCATGTACTTGAGTACTCACTAATAGCAACTACCGTTGCAACT</genome_strand>
        <mrna_strand>ACAAGATGAAATCGAGGACTTGTCGTTGTCCCTTCCAACTGTTGGCTCAATGCAGATTGCTGGAAGTAACGGTTTTGGACATAACATAGAGTTCATGTCTCAAGCTTATCTTAGAAACAGAAGCTCTGAAATTGATATAGAAGTTGAACATGATACGTCTATCGCTCATATAGATCAACCTCTTCCCATATTCCTCAAG.....................................................................TTTGCAAATGTGGAGTATAAGGTGAAGACTAATCAAGCTTTCTCCAACAATCCTGTCAAGGCAGTTGTCTCAAAGGTAGCTTCTCAGTTTGAAAATGATAATTACAAACATATACTCAAAGGTATAACGGGAAGCATTAGTCCCGGTGAAATTCTTGCCTTAATGGGACCTTCGGGCAGTGGAAAAACGACTTTGTTAAAGATACTGGGTGGAAGATTGCACGAAAATGTCAAAGGAACCGTCACTTACAATGACATTCCATATAGTCCAGCTCTGAAAAGAAG......................................................................................................................................GGTGGGTTTCGTGACACAAGATGATGTGCTTTTCCCACAATTGACGGTTGAGGAAACTTTAGTTTTTGCTGCATTCTTAAGACTTCCATGCAAGATGAGTCGACGTCAGAAGTATGAAAGAGTAGAAGTGATTATTAAGGAATTAGGCCTTGAAA-GTACTTTGNTATCCTTTCATGTACTTGAGTACTCACTAATAGCAACTACCGTTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345004" ref_strand="+" ref_description="SGN-U345004        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:22679802-22682259 FORWARD | Aliases: MYN21.7, MYN21_7(evalue: 4e-40, score=98.2) genbank/nr: Unknown(evalue: 4e-38, score=99.8)">
      <seq>ccaaaaatacactcaaccctgcaaattccctttaaaaaatcttactgtaaaacttaaagtcaccattaatggtgaatcaagaaagtcaatcttaagaattttcccatttttgaacaaccatagtcataaagattgagtcttttgagttttctgaggaaaaaaaagctatctttatcagaaattaatggacctggtgccttattcaaacccaaaagctgaatcaagtgttgttaatccaccttggaaaaatatgtttagatcagcttcaatgaggaaaccagaagaaccaaagccccagaaccaggtcccttcaaaggctcagccaagaaaagaaaatgaaccaaatcaagattcaatgtctgctgaccctcaggtgagactagccctttatatagctatggctcatgctggacttgtatttacatttttcattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="12429" stop="13466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12729" g_stop="13166" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U345004" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12729" e_stop="13166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATACACTCAACCCTGCAAATTCCCTTTAAAAAATCTTACTGTAAAACTTAAAGTCACCATTAATGGTGAATCAAGAAAGTCAATCTTAAGAATTTTCCCATTTTTGAACAACCATAGTCATAAAGATTGAGTCTTTTGAGTTTTCTGAGGAAAAAAAAGCTATCTTTATCAGAAATTAATGGAGCTGGTGCCTTATTCAGACCCAAAAGCTGAATCAAGTGTTGTTAATCCACCTTGGGAAGATATGTTTAGATCAGCTTCAATGAGGAAACCAGAAGAACCAAAGCCCCAGAACCAGGTCCCTTCAGAGGCTCAGCCAAGAAAAGAAAATGAACCAAATCAAGATTCAGTGTCTGCTGACCCTCAGGTGAGACTAGCCCTTTATATAGCTATGGCTCATGCTGGACTTGTATTTACATTTTTCATTATTTA</genome_strand>
        <mrna_strand>CCAAAAATACACTCAACCCTGCAAATTCCCTTTAAAAAATCTTACTGTAAAACTTAAAGTCACCATTAATGGTGAATCAAGAAAGTCAATCTTAAGAATTTTCCCATTTTTGAACAACCATAGTCATAAAGATTGAGTCTTTTGAGTTTTCTGAGGAAAAAAAAGCTATCTTTATCAGAAATTAATGGACCTGGTGCCTTATTCAAACCCAAAAGCTGAATCAAGTGTTGTTAATCCACCTTGGAAAAATATGTTTAGATCAGCTTCAATGAGGAAACCAGAAGAACCAAAGCCCCAGAACCAGGTCCCTTCAAAGGCTCAGCCAAGAAAAGAAAATGAACCAAATCAAGATTCAATGTCTGCTGACCCTCAGGTGAGACTAGCCCTTTATATAGCTATGGCTCATGCTGGACTTGTATTTACATTTTTCATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345793" ref_strand="+" ref_description="SGN-U345793        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:22679802-22682259 FORWARD | Aliases: MYN21.7, MYN21_7(evalue: 4e-122, score=434) genbank/nr: gi|18423808|ref|NP_568833.1| expressed protein [Arabidopsis thaliana] gi|16648987|gb|AAL24345.1| Unknown protein [Arabidopsis thaliana] gi|28059051|gb|AAO29982.1| Unknown protein [Arabidopsis thaliana](evalue: 3e-120, score=434)">
      <seq>atccccctctccttatgcagagaaactcttaagcctgaaaaggagggttaaagatcgtgaatgggcacaaatatatacagaagtggatgtaatgttcagggaacttctgatcactagagaggacttggttgagaaagccaaagggttcgctctccaaggagtaaatgtaatgcaacggatactggttagtagcacatctgtcttaggtgggagcatgaaggtcatgttcttgatcgggaattccatcgtttcgggtgctgctggtctttttaattttgtatctcagctaatggtattcatttgggtactttattatctcatcacatcggattctggtggagtaacagaacaagtcatgtctatgctccctatgtcacattccgcaaggaggcgaagtgttgaggttcttgacaaagctatttctggggttcttctagcaactgctgagattgcactctttcaggggtgtctaacttggctcttgttcagattattctccatacattttttgtacatgtcaacaatcctcgcatttcttagtcctttgtttcctattttcccatcactgttttcaactatcccagctgctttacagttggtgcttgaaggtcaatatgtattggccatcagcttatcaattatacatctcgtacttatggactatggtacatccgaaatcatggaggatatacctggctataacgcgtatctcactggtctcagcattattggaggaatgacattgttcccttcagcatttgagggagcaataatgggacccctgataactactgttgtgatcgcaattaaagatttgtatgttgaatttgtattggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="13695" stop="15850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13995" g_stop="14757" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14758" i_stop="15472" i_length="715">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15473" g_stop="15550" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="841" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U345793" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13995" e_stop="14757"/>
          <exon e_start="15473" e_stop="15550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCCTCTCCTTATGCAGAGAAACTCTTAAGCCTGAAAAGGAGGGTTAAAGATCGTGAATGGGCACAAATATATACAGAAGTGGATGTAATGTTCAGGGAACTTCTGATCACTAGAGAGGACTTGGTTGAGAAAGCCAAAGGGTTCGCTCTCCAAGGAGTAAATGTAATGCAACGGATACTGGTTAGTAGCACATCTGTCTTAGGTGGGAGCATGAAGGTCATGTTCTTGATCGGGAATTCCATCGTTTCGGGTGCTGCTGGTCTTTTTAATTTTGTATCTCAGCTAATGGTATTCATTTGGGTACTTTATTATCTCATCACATCGGATTCTGGTGGAGTAACAGAACAAGTCATGTCTATGCTCCCTATGTCACATTCCGCAAGGAGGCGAAGTGTTGAGGTTCTTGACAAAGCTATTTCTGGGGTTCTTCTAGCAACTGCTGAGATTGCACTCTTTCAGGGGTGTCTAACTTGGCTCTTGTTCAGATTATTCTCCATACATTTTTTGTACATGTCAACAATCCTCGCATTTCTTAGTCCTTTGTTTCCTATTTTCCCATCACTGTTTTCAACTATCCCAGCTGCTTTACAGTTGGTGCTTGAAGGTCAATATGTATTGGCCATCAGCTTATCAATTATACATCTCGTACTTATGGACTATGGTACATCCGAAATCATGGAGGATATACCTGGCTATAACGCGTATCTCACTGGTCTCAGCATTATTGGAGGAATGACATTGTTCCCTTCAGCATTTGAGGTAATCTAAAACATCACTCTCTCTTGAATTTCCATTATAACGTTCTTGCATTACTTAGTTACCTGTCAGGTTACCTCTCTTGTTGAGTATGAGGAAGGAAGTGAACTTGGAGAATTGGCAATGCCTATACATCAGATATTAAGATATCCCCAATATTAGACAGAAAAATGTGAACTTTAAAAGTCCTTCATTTACCTATCAAAAAGAGAAATATGATTGTCACGCGATGACAGGAAAGACGATAATTCTATTGGGGAGAGAAGCTATGAGTGCATTCCCTTTCAACCTTATTCTTAACTCCAGTTATTGTCTAGATCATGATTGTCTTGGAACTATGATGTATTACTTTTTTGTGAGTTCCACACCCCAACTATCAATTGCTTCCTTTTCCTACCTAAACTATCATCATTATATATTAAAACATGACTGATTGGGCCAACTATCAGTTGTTTCCTGTGTCGCCTTTTGCGCATGTATAAAGATGTCTATTTGCTTTATATGTCACTTCATGACTTGAGTGGTACCTGAAAGCACACCAAGGTGTGTTTTAATACGTAGATGCTCATAGTTCTTGTAGGGAAAGGGAACAACCAGTGGTTTTGTAAAAACAAGAAAAGTTCATGTGTGTTTTTGACCATTATCTCTTTCACTTGAGATGATTTCATTACCATAAAGGTCGCATCTTTGATATTAATTGTGTATTTATGTTGCACAGGGAGCAATAATGGGACCACTGATAACTACTGTTGTGATCGCGATTAAAGATTTGTATGTTGAATTTGTATTGGAAGAA</genome_strand>
        <mrna_strand>ATCCCCCTCTCCTTATGCAGAGAAACTCTTAAGCCTGAAAAGGAGGGTTAAAGATCGTGAATGGGCACAAATATATACAGAAGTGGATGTAATGTTCAGGGAACTTCTGATCACTAGAGAGGACTTGGTTGAGAAAGCCAAAGGGTTCGCTCTCCAAGGAGTAAATGTAATGCAACGGATACTGGTTAGTAGCACATCTGTCTTAGGTGGGAGCATGAAGGTCATGTTCTTGATCGGGAATTCCATCGTTTCGGGTGCTGCTGGTCTTTTTAATTTTGTATCTCAGCTAATGGTATTCATTTGGGTACTTTATTATCTCATCACATCGGATTCTGGTGGAGTAACAGAACAAGTCATGTCTATGCTCCCTATGTCACATTCCGCAAGGAGGCGAAGTGTTGAGGTTCTTGACAAAGCTATTTCTGGGGTTCTTCTAGCAACTGCTGAGATTGCACTCTTTCAGGGGTGTCTAACTTGGCTCTTGTTCAGATTATTCTCCATACATTTTTTGTACATGTCAACAATCCTCGCATTTCTTAGTCCTTTGTTTCCTATTTTCCCATCACTGTTTTCAACTATCCCAGCTGCTTTACAGTTGGTGCTTGAAGGTCAATATGTATTGGCCATCAGCTTATCAATTATACATCTCGTACTTATGGACTATGGTACATCCGAAATCATGGAGGATATACCTGGCTATAACGCGTATCTCACTGGTCTCAGCATTATTGGAGGAATGACATTGTTCCCTTCAGCATTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAATAATGGGACCCCTGATAACTACTGTTGTGATCGCAATTAAAGATTTGTATGTTGAATTTGTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U347052" ref_strand="+" ref_description="SGN-U347052        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:22679802-22682259 FORWARD | Aliases: MYN21.7, MYN21_7(evalue: 2e-10, score=63.2) genbank/nr: Unknown(evalue: 7e-09, score=64.3)">
      <seq>ttttttttttgacatgagaaaacaattctatttctcttcaaaagattaaaggttttacaaagaagatacaatgcacaattctatactccaattttaataatttaccaattttctgcacactataaacagctttttctgagagaaaaaaaaaatcctcaaacacaggtagaatacaaacaatagttgactgggagaaaaaagaattcactttatcttgcgatgtttttccatcaaagaaagtaatagggggttcttctcaatgtcttcaaaggttcaggcattgcaaacacagatttgttctgcttattccttctgttcttccaatacaaattcaacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="16156" stop="15226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15865" g_stop="15526" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U347052" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U347052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15865" e_stop="15526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAAATGACATGTCAAAACAATTCTATTTCTCTTCAAAAGATTAAAGGTTTTACAAAGAAGATACAATGCACAATTCTATACTCCAATTTTAATAATTTACCAATTTTCTGCACACTATAAACAGCTTTTTCTGAGAGAAAAAAAAAATCCTCAAACACAGGTAGAATACAAACAATAGTTGACTGGGAGAAAAAAGAATTCACTTTATCTTGCGATGTTTTTCCATCAAAGAAAGTAATAGGGGGTTCTTCTCAATGTCTTCAAAGGTTCAGGCATTGCAAACACAGATTTGTTCTGCTTATTCCTTCTGTTCTTCCAATACAAATTCAACATAC</genome_strand>
        <mrna_strand>TTTTTTTTTTGACATGAGAAAACAATTCTATTTCTCTTCAAAAGATTAAAGGTTTTACAAAGAAGATACAATGCACAATTCTATACTCCAATTTTAATAATTTACCAATTTTCTGCACACTATAAACAGCTTTTTCTGAGAGAAAAAAAAAATCCTCAAACACAGGTAGAATACAAACAATAGTTGACTGGGAGAAAAAAGAATTCACTTTATCTTGCGATGTTTTTCCATCAAAGAAAGTAATAGGGGGTTCTTCTCAATGTCTTCAAAGGTTCAGGCATTGCAAACACAGATTTGTTCTGCTTATTCCTTCTGTTCTTCCAATACAAATTCAACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317681" ref_strand="+" ref_description="SGN-U317681        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | Cwf15 / Cwc15 cell cycle control family protein, contains Pfam profile PF04889: Cwf15/Cwc15 cell cycle control protein; similar to Cell cycle control protein cwf15 (Swiss-Prot:P78794) (Schizosaccharomyces pombe) | chr3:4242132-4244140 FORWARD | Aliases: MJG19.16(evalue: 6e-58, score=221) genbank/nr: Cwf15/Cwc15(evalue: 6e-58, score=227)">
      <seq>agggcacttattatttatccggcggtgcatcgtccccaaacaatccggtgtgaattgggtcaaaccaaaatccgaatctcccagctccatcatctcttcgattccgccggcgatttcaatcactccttaagaattttgaagtatgacaactgcagctagacctacatgggcaccagctaaaggagggaatgaacaaggtggaactagaatttttggtccatctcagaagtattcttcaagagatattgcagctcacactactttaaagcctagaaaggagggacaggatactcaggatgagttgcataggagaaatctccgggaagagttggaggaccgtgagcgaagacatttttcttcaaaagacaacggctacgaggacagagatcgtagaaagagtggtcaactgcttttagatggtgctaaaagagtgattgaagaccgcattgttccacgcagcgctgatgctgatgatgatgcagacaccaaaagtgacgatgagagtgaggatgatgacgacgatgatgatgaagatgatacagaggctctattggcagagcttgaacagataaaaaaggagaaagcagaggagaaacttcgaaaagaacgacaagagcaagaggaggagcttaaagcaaaggaagcagaattgttgaaaggaaaccctcttataaaccagccaacgtctttcagtgttaagagaaggtgggatgatgatgtggtcttcaagaatcaggctcgcggagaactgaaggtagccaagcgtttcattaatgacaccatccggaatgactttcacaggaagtttctccacaaatacatgaaatgataataggattttgatgtgaaaaaaaagcaatcaacaaacatcaatgccttgtgaattgtttttgttgtagttgtttctcaacaccctgtcatatcattcaagcattactgtaatattgtcattcctaaactatatatggaaatacatttctgttctttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="19603" stop="15927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19303" g_stop="19173" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19172" i_stop="19008" i_length="165">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19007" g_stop="18866" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="273" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18865" i_stop="17757" i_length="1109">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17756" g_stop="17653" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="377" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17652" i_stop="17543" i_length="110">
            <donor d_prob="0.498" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17542" g_stop="17501" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="419" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17500" i_stop="17415" i_length="86">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17414" g_stop="17330" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="504" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17329" i_stop="17064" i_length="266">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17063" g_stop="16964" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="604" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16963" i_stop="16708" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16707" g_stop="16607" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="705" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16606" i_stop="16513" i_length="94">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16512" g_stop="16231" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="987" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="990" polyA_stop="1039"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U317681" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>987</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19303" e_stop="19173"/>
          <exon e_start="19007" e_stop="18866"/>
          <exon e_start="17756" e_stop="17653"/>
          <exon e_start="17542" e_stop="17501"/>
          <exon e_start="17414" e_stop="17330"/>
          <exon e_start="17063" e_stop="16964"/>
          <exon e_start="16707" e_stop="16607"/>
          <exon e_start="16512" e_stop="16231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCACTTATTATTTATCCGGCGGTGCATCGTCCCCAAACAATCCGGTGTGAATTGGGTCAAACCAAAATCCGAATCTCCCAGCTCCATCATCTCTTCGATTCCGCCGGCGATTTCAATCACTCCTTAAGGTAATTGAAAATCCGATTATCGAATTTTGATAGTAGGGTTAGAAATGAATTGTTGTTTTCTAGGGTTCTTAGATTATTTTAACCTAATTTGATGTTTGTTGATGTTTACATTCATGAAAAGAAAATTTGGATTTCTGAGTAAAGAAGTTACTTTTTTTCACACAGAATTTTGAAGTATGACAACTGCAGCTAGACCTACATGGGCACCAGCTAAAGGAGGGAATGAACAAGGTGGAACTAGAATTTTTGGTCCATCTCAGAAGTATTCTTCAAGAGATATTGCAGCTCACACTACTTTAAAGCCTAGGCAAGTAATTTGAAATAATGTTTTTTTTTTATTACTACTTCCGTTTCAATCTGTTTGTGTGGTTTTTGACTTACCACGGAGTGTACTGAGTCTAAAGCTGGGATTTTTGTGGCTCAACTTACCTGGTTCCAACCTGCATCCCTATTCGGTTATTGTGTCTGTAGATGTATGATCTTATTTTGCATTCAGGTGAAGTGAAGTGGCTTATGCTCATTTTTTTTAAGAAAGGTAGATATAAGTGAAATGGATTATGTTAAAGCGGAACTAAGAGCTATTGAAAGGTTATGTTGAGTATAATTGAAGCTTATAATGATAATATGGTCAGTAGTTTCACTTGTTATATTTATTGTCTCCTCCTGTAGTTGTAGTCCAACAGACATGGTTTCCCCATAGAATTACCTGGGAAGTTCTGTTAAGTCAATCTTCTTAAGAGAAAGGCGTTGTACATTTATGATATGATTAAAGGTATGCAATTTTATTTTCCACTCGGTATGGGTAAAATGTTTAGATTGTTCTTAATTTGAGAAGTTGTAAATAAATGCGTCAATAGTATGTCAAGGATCAATTTATCAAAACGATAGCATGGCAAGGAACTGTGTTTATCACGAATGCTATAATTAGAAAATGGTGTATTACAACATATCTTATGTCCATTTTACCTAGTTATTGCAGTATATGGTATGAATGTAGGTTATTGTAGATTCTAAGTGAGTTTAGTTCGTGTCACTTATGAGTAGAAACAGTTCTGACCCAAGTTGATTTGAGGGATGAATTGATTTATTTGTGTGAGAAATAGGGTAGATGATGTATGCTGTAATTTGTCAAACTGATTGATGAACTTGCATTACTTGTATTTCTGAATCCTGGCATATAGAAATTTAGGCAGTTCATTGTTGAACTCAATGGGTTTGTCATTAAGGTAACATAAGTTGGCTGTCCTCCTAATTGTCGTGAATCTGAATTGAACTCGATATTATTATCATGCATATTACATACAAGGCGTTTCTCTATTTCCATTAATGGTTCTGCCTGAGTTGCTTAAATTGGTGCTCTTCTAAATTCTTATCATGATTTCATTATCTCTATTTCCATTGTTGTGTATGATTCAGAAAGGAGGGACAGGATACTCAGGATGAGTTGCATAGGAGAAATCTCCGGGAAGAGTTGGAGGACCGTGAGCGAAGACATTTTTCTTCAAAAGACAACGGCTACGGTATGTGATATATGGATAGACTCTCTCCCTCCTGCACGCATGTGTGGACTCATATCAAATTCCTATCTGATTTTGTTCAACTCATAAACTTATAGTATATGTTGTTGCAGAGGACAGAGATCGTAGAAAGAGTGGTCAACTGCTTTTAGATGGTGAGTGTTGTTTGTTCATTAGACTAGTCTAGAATTTCAACAAGACATTCATCATGTTTCCATTATTATATGATATTCTGCTGCAGGTGCTAAAAGAGTGATTGAAGACCGCATTGTTCCACGCAGCGCTGATGCTGATGATGATGCAGACACCAAAAGTGACGATGAGAGGTTTGTACATTGTTCCCCATTTGTACAAAGATGCTTTTAGTAAGCTCCTATTTGTGCAAACGTTGGAATACTTGATAGTTTTTCATTGATAAATAAGGGTTGTTGAACAATTGTTTTTTGTTGTACGATCAAATTTTGTTGTAGAATGCATGTCCTTAATATTTCCAGTTCATCGTTGATATGTTTCCACCCTTACTGCAGCTTTGCATTTAGACTGTTTTATTTTGTTACTTCAAAACCTTATAAGTTGTTTACGCTGATTTTAGTGAGGATGATGACGACGATGATGATGAAGATGATACAGAGGCTCTATTGGCAGAGCTTGAACAGATAAAAAAGGAGAAAGCAGAGGAGAAACTTCGAAAAGTATGTATTACTAAATGCTTGATAGTTTCTTTACCAATTTGTTATGTGGGTCCTTCAAAATTTCCTGTTTCTTAAACTGCATATCCTGAGGTTTATATTGGTGGTATTCCTTCTCCACACGAATAGCTTCTAGAACTGTGCAAAATTTCCATTCAGAGCTGTAGACAGAAGGGAGTACCAATCATCGTATTCATCTGATGATGTGAATACCAACCATCAACACTGCTATGAACTCAAAGTTGTGTGATTTTGGCAGGAACGACAAGAGCAAGAGGAGGAGCTTAAAGCAAAGGAAGCAGAATTGTTGAAAGGAAACCCTCTTATAAACCAGCCAACGTCTTTCAGTGTTAAGAGAAGGTTAATCCCTTAAGGCATGGCATCTTTTGAGATTTTTCAGCTTTACTTCTATGTAAAACTTACCACATTTGTCTTTGATTCATTTTCTCTTTAGGTGGGATGATGATGTGGTCTTCAAGAATCAGGCTCGCGGAGAACTGAAGGTAGCCAAGCGTTTCATTAATGACACCATCCGGAATGACTTTCACAGGAAGTTTCTCCACAAATACATGAAATGATAATAGGATTTTGATGTGAAAAAAAAGCAATCAACAAACATCAATGCCTTGTGAATTGTTTTTGTTGTAGTTGTTTCTCAACACCCTGTCATATCATTCAAGCATTACTGTAATATTGTCATTCCTAAACTATATATGGAAATACATTTCTGTTCTTT</genome_strand>
        <mrna_strand>AGGGCACTTATTATTTATCCGGCGGTGCATCGTCCCCAAACAATCCGGTGTGAATTGGGTCAAACCAAAATCCGAATCTCCCAGCTCCATCATCTCTTCGATTCCGCCGGCGATTTCAATCACTCCTTAAG.....................................................................................................................................................................AATTTTGAAGTATGACAACTGCAGCTAGACCTACATGGGCACCAGCTAAAGGAGGGAATGAACAAGGTGGAACTAGAATTTTTGGTCCATCTCAGAAGTATTCTTCAAGAGATATTGCAGCTCACACTACTTTAAAGCCTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGGGACAGGATACTCAGGATGAGTTGCATAGGAGAAATCTCCGGGAAGAGTTGGAGGACCGTGAGCGAAGACATTTTTCTTCAAAAGACAACGGCTACG..............................................................................................................AGGACAGAGATCGTAGAAAGAGTGGTCAACTGCTTTTAGATG......................................................................................GTGCTAAAAGAGTGATTGAAGACCGCATTGTTCCACGCAGCGCTGATGCTGATGATGATGCAGACACCAAAAGTGACGATGAGAG..........................................................................................................................................................................................................................................................................TGAGGATGATGACGACGATGATGATGAAGATGATACAGAGGCTCTATTGGCAGAGCTTGAACAGATAAAAAAGGAGAAAGCAGAGGAGAAACTTCGAAAA................................................................................................................................................................................................................................................................GAACGACAAGAGCAAGAGGAGGAGCTTAAAGCAAAGGAAGCAGAATTGTTGAAAGGAAACCCTCTTATAAACCAGCCAACGTCTTTCAGTGTTAAGAGAAG..............................................................................................GTGGGATGATGATGTGGTCTTCAAGAATCAGGCTCGCGGAGAACTGAAGGTAGCCAAGCGTTTCATTAATGACACCATCCGGAATGACTTTCACAGGAAGTTTCTCCACAAATACATGAAATGATAATAGGATTTTGATGTGAAAAAAAAGCAATCAACAAACATCAATGCCTTGTGAATTGTTTTTGTTGTAGTTGTTTCTCAACACCCTGTCATATCATTCAAGCATTACTGTAATATTGTCATTCCTAAACTATATATGGAAATACATTTCTGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318727" ref_strand="+" ref_description="SGN-U318727        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcineurin B-like protein 3 (CBL3), identical to calcineurin B-like protein 3 (GI:22136404) (Arabidopsis thaliana) | chr4:13408453-13411076 REVERSE | Aliases: T15N24.20, T15N24_20(evalue: 8e-110, score=393) genbank/nr: gi|57472399|gb|AAM91028.2| calcineurin B [Pisum sativum] >gi|58397762|gb|AAW73072.1| calcineurin B-like protein [Pisum sativum] (evalue: 7e-112, score=406)">
      <seq>aaaaaccaaaaagaaataaataaggttaaggagagcttcctccttctcctacctcaaaaattcatctctgattttgcaatcatctcaaattaaatctccatttattcataaacatatatagctgcatatagataggtttcagaaactttcagtattttggattcataaatagacataacagagaatggtcgaaagatatggagtgttttgaatctgagacgttaccatgctgcagtgcttaggttcttacctttcgaggtgttgcgatcttgattttaagcaatcggggggcctcgacgatcctgagatacttgcacgagagacagtttttagcgtcagcgagattgaagctctttatgagctctttaagaagataagcagtgcagtgattgatgatggtttaatcaacaaggaagagtttcaattggcacttttcaagacaaataaaaaggaaagcttgtttgctgaccgggtgtttgacttgtttgatacaaaacacaacggaatcttgggatttgaagaatttgctcgtgcactctctgttttccatccaaacgcacctatcgatgacaagattgaattttcttttcagctatatgatctcaagcaacaaggttttattgagagacaagaggtaaagcaaatggtagtggctactcttgcggagtctggtatgaacctctctgatgatgtgatcgagagcattattgacaagacttttgaagaagccgataccaagcatgatggaaagatcgataaggaggaatggagaaacttagtgttgcgacatccttcacttttgaagaacatgaccctccaatatctcaaggacattactacaacgtttccgagctttgtctttcattcaagagttgaggacacctaatttgggatttgacaagagaattatgattccatgaacatagtataacattctgtttgctctctacatggtttcttattattcttttttgaatagttgttttgtgatttatttctatgaattgattgatgtggagtttctattgactgattaggaacaaacaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="24694" stop="30642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24994" g_stop="25106" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25107" i_stop="26073" i_length="967">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26074" g_stop="26155" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="195" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26156" i_stop="26257" i_length="102">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26258" g_stop="26391" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="329" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26392" i_stop="27045" i_length="654">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27046" g_stop="27128" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="412" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27129" i_stop="27299" i_length="171">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27300" g_stop="27359" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="472" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27360" i_stop="28679" i_length="1320">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28680" g_stop="28788" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="581" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28789" i_stop="28873" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28874" g_stop="28926" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="634" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28927" i_stop="29599" i_length="673">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29600" g_stop="29680" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="715" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29681" i_stop="29925" i_length="245">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29926" g_stop="30038" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="828" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30039" i_stop="30119" i_length="81">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30120" g_stop="30342" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="1051" r_length="223" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U318727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1051</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24994" e_stop="25106"/>
          <exon e_start="26074" e_stop="26155"/>
          <exon e_start="26258" e_stop="26391"/>
          <exon e_start="27046" e_stop="27128"/>
          <exon e_start="27300" e_stop="27359"/>
          <exon e_start="28680" e_stop="28788"/>
          <exon e_start="28874" e_stop="28926"/>
          <exon e_start="29600" e_stop="29680"/>
          <exon e_start="29926" e_stop="30038"/>
          <exon e_start="30120" e_stop="30342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAAAAAGAAATAAATAAGGTTAAGGAGAGCTTCCTCCTTCTCCTACCTCAAAAATTCATCTCTGATTTTGCAATCATCTCAAATTAAATCTCCATTTATTCATAAACGTAAGTTTTTTTTGTTTACCCTTTTTCATTGTGATTCTCATGTTGTTGTTTTCTTGTAATTATTAGATCTGTTTGTTAATCAAATCGAACTGTTTGATTGAATAGTTGAAATTCTTGATCTGATTGAATTTTGATGTGATATACAAGTTTGTTTTTGTGTAATTTGATGTGGAGTTTTTATAATTTTGTTGTTTTTATAAGTAAAGTTTCGAAATGTAAGCTAAATTTGAGTTTAGATATAAAGATTCATTTTTTAAAGAATTCAATTCCGATTGCCCTGCAGAAAGGAATGTGATTTTGGCGTGAAAAGTTTAGCCAACTTGTTTTTGCAAGTTCTCACTTATGAATTAATCTTCGAGGTGACTGTTCGTTTCATTTTTATCAATAAAAGAATGATCTTTTGGTGTTGTATTGTCTTTGAGGTTTAGTGCTGTTGTTGAGTTTGTTTCGAGGTGACTGTTCGTTTCATTTTTATTAATAAAAGAATGATCTTATGGTGTTCTGTTGTCTTTGAGGTTTACTGTTGTTGTTGAGTTTGTTTCGAGGTGACTGTTCGTTTCATTTTTAGTAATAAAAGAATGATCTTTTGGTGTTGTGTTATCTTTGAGGTTTAGTATTATTGTTGAGTTTGTTACATTGATATTGAACCTGAAATCTATGAATTATAAGTCAATTTGTGGAATGGGGGACTGGGGTTATAGTATAATTAGTTGTAGAAGAAGAAAAAGTTGCAACTTTTTGATTTTTGTTCGGATGATGCAATCGGTGAGGTTGAAGAGATACGTTAAGTTATGGTGATAAATTGGCAGGATTTAAACTGCATGGCAAGACGATAATCAATAATGAGATTTACGTTGAAAGATTTGACCATGTTGACTGAATTAAACGGCGTGTTTTAGTGCTTCTTTTATTAGTTTCAGTAGATATTTATGGAACTAAATTGTGTGTTGACATGTTGATATGGCAGATATATAGCTGCATATAGATAGGTTTCAGAAACTTTCAGTATTTTGGATTCATAAATAGACATAACAGAGAATGGTCGAAAGGTTAGTTTTGTTCTTTTCATGTCCGAGAGACATTTCTGTGGTACAAATAATCCAATTAAATTTGTTTTTTTGACTTTGTCTTCTGCCATTTTTGTTGAACAGATATGGAGTGTTTTGAATCTGAGACGTTACCATGCTGCAGTGCTTAGGTTCTTACCTTTCGAGGTGTTGCGATCTTGATTTTAAGCAATCGGGGGGCCTCGACGATCCTGAGATACTTGCACGAGAGACAGTTTGTATGCTACTTGGACATTTTGTGATTTTTTCCTAGAAACGTGAAATGATTATGGAAAATAACAAAAGCAAAGTCAAATGGTTCTGAGCTTTTGCCTTTTCTTAGTGGTTCTATTTCCATGATTTTTACCATCATTTTAAAGCTTATTACGGTTCTGTGAAAATGGATAGCATATGCTCCTTTGAGACGTTCTTCCCATATCGGGATGTATCAAAATGTTTGATACCATTCCCTTCCAAAGGAAATTCCTCACAGAACTTACGGTCATTAAGTTGTTTAGATTGTAATACATTGATATTCTAAAATTTGAGACTATGTATCTTTAGAAAAACCGTCTCAATACTAATTTGATCTATAATCAGAATTTGCTATGTTTTTATTGTCGTTAAGCATTTGAAACTACTTTAACCCATCCTCACAGAATTTACGGTCATTAAGCTGTTTAGATTGTAATACATTGATATTCTAACATTTGAGACTATGTATCTTTCAAAAACTATCTGAATACTAATTTGATCTATAATCAGAATTTCTATGTTGTTATTGTCGGAAAGCATTTGAAACTACTATAACCCATAGGTTTTTAGTGTCACGTGGTTTTTGCACTAGTTGAAGTACTATAGCTGAACCTACATAAACTTCTTTCTTGTTGCAGTTAGCGTCAGCGAGATTGAAGCTCTTTATGAGCTCTTTAAGAAGATAAGCAGTGCAGTGATTGATGATGGTTTAATCAACAAGGTTTGTGTCACTTGGTTTTCTAAGAGCAATCTAGTATACTAGCATCAGTGCTCTGGCAATCCACTGTCATTGAAAAAGAACTATCTACATGGTCTTTTCCTGGCATGGATGCTTAATATGTATTTATCTTCCGCTGTTCTTTTGGATTTGATTTTGTACCTTATCTTGCAGGAAGAGTTTCAATTGGCACTTTTCAAGACAAATAAAAAGGAAAGCTTGTTTGCTGACCGGGTACGATCTCCTTAAATGCTATTAGATTTTTAAATGTAATCCCAATTTCATTGAATTTAATAAGGGTCCGTTTCTCGCCAAAAATTAGATATATTGTCTGCATCTTATTATTGCTATACAGCTCAAGCTGTTCTCGTCTAACGGATCAGCTAAGTTGCTTATCCTCTTTAAGTAAGGGAATATGATGGAGGAAGTACAGCCATGCTTATTGTACTCCCTTCACATGCAGCGCATAGAATAAATTAGATTTTAATGGCATTCGTCAATGAAGTTTTTGGTCTGGTTGTCAAAGTGCACGCAAAATTTCCATTACTGTCGAATATGATGAGATTGAGAAATGTGATTTGGTAGCACCCAACAAGATTAACTTTAAATATTATTTAGAAGGGAACTGACATGGTTTTACAAAAGTATTCAATTTTATAGTATAATAATTGAAGGTTTGCGAAGGAAGCAGGATGGAAACAAGGTTTAAGAATTTTAAATTCTTCATGGGAATGAATATATCTAGGTTATCATTTTCAGTTTTCTTATTAAAATTCTATTTTTATCTTATATGCTTTAATATTGGATATCCAATGGTAGTTTTAGTCTTCAAGGTGTCCAAAAAGTATACAATGTATATAGCTCAAATGCTGTTTTAATTAAATATATTCTTTTGATTTGGACACCCTTAATAGACCCGAGAGGCACGGTCTAGCGGTAAAGCCTGCTCGCTTGGAGTTCCGAGTTGCGGGATCAAATCCCACTTTGTACTTTTCATCTACGCATTACCTATTTTAAACGAAAAAAAGAAAGTTGAGTCTACCTATATTGATGCAATAAGGGAACATTTTTAACTATTCTTTTCAAAATCTAAAAGAATTTCTTAAAAAATAACTTTCAGAAATTATGTAAAAATAAATAATTAATTTTTACAATATGTTTTACTAAAAGTATTACTAAAGAAATCTTCAAGTATAAAAGTATCAATCATGCGGATGAATATGTTTATATATTAATATGGTCCAATTGTGATTTCATGAACATCTTTATATTAATATGGCGAATGTGATTTCAAATATTCATGAATGTCTTTAGGACGTGTGGATTTTGAATTTTGAGTAAATTTTGTAGGTTATGCTTGTTTATGTGTTGCTATTGCATTTATTTTATTCTTATTTTTTCTCTCCCTACAAAATGTGCTTAGCTTCTAGTTTATCGCCTAAATTCCCGGAACCTTGTCATTTTAAACATTTCTATTATTGGTCTGGAAGGTTGAGAAGACACACCGGATGGAATTATCTTTATTTCCCCCACTCTGACCTATCTAATATGCAGGTGTTTGACTTGTTTGATACAAAACACAACGGAATCTTGGGATTTGAAGAATTTGCTCGTGCACTCTCTGTTTTCCATCCAAACGCACCTATCGATGACAAGATTGAATGTATGTTTTGTGTTTGCATTTAATGAGTCATGACTATTAACTTTAGTTGGTCTTAACTGCTTCTAATGGGTTACTACTATTGCAGTTTCTTTTCAGCTATATGATCTCAAGCAACAAGGTTTTATTGAGAGACAAGAGGTAATTATAAATCTCAATAAGTGAAAGTGATTAAATGTCCCCAATTTTGAAAGTCTTTGTTTAAGTAGTTGACTGGACTCTTGAGGCAAGGCAAAAGACATTAAACGGTCTGTATCCAGGTGGCAAAGCTCCACCGAGGGGTTTGCGTTTAGGGCTTTTAGGCTGATGAATGTACTTTTTTACAGGCATCTTTCTAGGTCTTGCATTGGGCTAGTCAAATTTCTGGTCCTTTTGCTCCATATTTCAGATTAGTATGGAATAATTTGGTTACCTTAAGCCCATTTAATGTATCTCTTTAATTATATGATAAGCAAATTAAGTGTGACCAAAGTCCAATTTTGGTCAGTAGTTTCCAGTCATCTTTCTGCTCCCGTTCTTCTTTTTTTCACCACTCCACATTCAATCTGATTTACTATTCCTGTTCTTTTCTAAAATTTCCGACAACTATTCCTTTTATAGTTTACTCATGAAGCATAACATTTTAGCCTTATCAAGTACTGGTCATCATAATTTGTAGAATGTTTCATAGTCTCTTCTCCTACTTTATAGTATCCCAGTTTTAGATGCTCTAATCGTGAAACCTCCCTGATGTCTCTTTACGAGCTTTATTAACCAACATTACTTGTGTGTGTATGCTTTTTGATAAGATAAAAGACGTGCCTTCTGAGTGCAGGTAAAGCAAATGGTAGTGGCTACTCTTGCGGAGTCTGGTATGAACCTCTCTGATGATGTGATCGAGAGCATTATTGACAAGGTGCTTCATCAACCTAAAAAGTACTTGTTTCTGCATGTTGTATAAGTCATACATAACAATAGTGAATTCACCTCATGGTCTATGTTGCCAAGTTTTATCTTGGACCAAAGGGAAAGTCTACGCTTTCAATTCCCCGAGGGTACCATAATCTTATCGCGTTTTTTCTTATTTTTACTGATCTCATTGTCTTATGAAAGTGAACCTTTTGATGATTAACTAATAATAATATGTTGTTGTTTTATCAGACTTTTGAAGAAGCCGATACCAAGCATGATGGAAAGATCGATAAGGAGGAATGGAGAAACTTAGTGTTGCGACATCCTTCACTTTTGAAGAACATGACCCTCCAATATCTCAAGTAAGTGTGAGACATGAAATGTTGAGGTATTTCATTGTTTTTTCGTTGTATTAATTCATATCTTCGTCCTCTAAACAACAGGGACATTACTACAACGTTTCCGAGCTTTGTCTTTCATTCAAGAGTTGAGGACACCTAATTTGGGATTTGACAAGAGAATTATGATTCCATGAACATAGTATAACATTCTGTTTGCTCTCTACATGGTTTCTTATTATTCTTTTTTGAATAGTTGTTTTGTGATTTATTTCTATGAATTGATTGATGTGGAGTTTCTATTGACTGATTAGAACCAAACAAAACC</genome_strand>
        <mrna_strand>AAAAACCAAAAAGAAATAAATAAGGTTAAGGAGAGCTTCCTCCTTCTCCTACCTCAAAAATTCATCTCTGATTTTGCAATCATCTCAAATTAAATCTCCATTTATTCATAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAGCTGCATATAGATAGGTTTCAGAAACTTTCAGTATTTTGGATTCATAAATAGACATAACAGAGAATGGTCGAAAG......................................................................................................ATATGGAGTGTTTTGAATCTGAGACGTTACCATGCTGCAGTGCTTAGGTTCTTACCTTTCGAGGTGTTGCGATCTTGATTTTAAGCAATCGGGGGGCCTCGACGATCCTGAGATACTTGCACGAGAGACAGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGTCAGCGAGATTGAAGCTCTTTATGAGCTCTTTAAGAAGATAAGCAGTGCAGTGATTGATGATGGTTTAATCAACAAG...........................................................................................................................................................................GAAGAGTTTCAATTGGCACTTTTCAAGACAAATAAAAAGGAAAGCTTGTTTGCTGACCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGACTTGTTTGATACAAAACACAACGGAATCTTGGGATTTGAAGAATTTGCTCGTGCACTCTCTGTTTTCCATCCAAACGCACCTATCGATGACAAGATTGAAT.....................................................................................TTTCTTTTCAGCTATATGATCTCAAGCAACAAGGTTTTATTGAGAGACAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCAAATGGTAGTGGCTACTCTTGCGGAGTCTGGTATGAACCTCTCTGATGATGTGATCGAGAGCATTATTGACAAG.....................................................................................................................................................................................................................................................ACTTTTGAAGAAGCCGATACCAAGCATGATGGAAAGATCGATAAGGAGGAATGGAGAAACTTAGTGTTGCGACATCCTTCACTTTTGAAGAACATGACCCTCCAATATCTCAA.................................................................................GGACATTACTACAACGTTTCCGAGCTTTGTCTTTCATTCAAGAGTTGAGGACACCTAATTTGGGATTTGACAAGAGAATTATGATTCCATGAACATAGTATAACATTCTGTTTGCTCTCTACATGGTTTCTTATTATTCTTTTTTGAATAGTTGTTTTGTGATTTATTTCTATGAATTGATTGATGTGGAGTTTCTATTGACTGATTAGGAACAAACAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336617" ref_strand="+" ref_description="SGN-U336617        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaaaccaaaaagaaatatttaaggttaaggagagcttcctccttctcctacctcaaaaattcatctctgattttgcaatcatctcaaattaaatctccatttattcataaacatatggagtgttttgaatctgagacgttaccatgctgcagtgcttaggttcttacctttcgaggtgttgcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="24695" stop="26630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24995" g_stop="25106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25107" i_stop="26257" i_length="1151">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26258" g_stop="26330" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="185" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U336617" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24995" e_stop="25106"/>
          <exon e_start="26258" e_stop="26330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAAAAAGAAATAAATAAGGTTAAGGAGAGCTTCCTCCTTCTCCTACCTCAAAAATTCATCTCTGATTTTGCAATCATCTCAAATTAAATCTCCATTTATTCATAAACGTAAGTTTTTTTTGTTTACCCTTTTTCATTGTGATTCTCATGTTGTTGTTTTCTTGTAATTATTAGATCTGTTTGTTAATCAAATCGAACTGTTTGATTGAATAGTTGAAATTCTTGATCTGATTGAATTTTGATGTGATATACAAGTTTGTTTTTGTGTAATTTGATGTGGAGTTTTTATAATTTTGTTGTTTTTATAAGTAAAGTTTCGAAATGTAAGCTAAATTTGAGTTTAGATATAAAGATTCATTTTTTAAAGAATTCAATTCCGATTGCCCTGCAGAAAGGAATGTGATTTTGGCGTGAAAAGTTTAGCCAACTTGTTTTTGCAAGTTCTCACTTATGAATTAATCTTCGAGGTGACTGTTCGTTTCATTTTTATCAATAAAAGAATGATCTTTTGGTGTTGTATTGTCTTTGAGGTTTAGTGCTGTTGTTGAGTTTGTTTCGAGGTGACTGTTCGTTTCATTTTTATTAATAAAAGAATGATCTTATGGTGTTCTGTTGTCTTTGAGGTTTACTGTTGTTGTTGAGTTTGTTTCGAGGTGACTGTTCGTTTCATTTTTAGTAATAAAAGAATGATCTTTTGGTGTTGTGTTATCTTTGAGGTTTAGTATTATTGTTGAGTTTGTTACATTGATATTGAACCTGAAATCTATGAATTATAAGTCAATTTGTGGAATGGGGGACTGGGGTTATAGTATAATTAGTTGTAGAAGAAGAAAAAGTTGCAACTTTTTGATTTTTGTTCGGATGATGCAATCGGTGAGGTTGAAGAGATACGTTAAGTTATGGTGATAAATTGGCAGGATTTAAACTGCATGGCAAGACGATAATCAATAATGAGATTTACGTTGAAAGATTTGACCATGTTGACTGAATTAAACGGCGTGTTTTAGTGCTTCTTTTATTAGTTTCAGTAGATATTTATGGAACTAAATTGTGTGTTGACATGTTGATATGGCAGATATATAGCTGCATATAGATAGGTTTCAGAAACTTTCAGTATTTTGGATTCATAAATAGACATAACAGAGAATGGTCGAAAGGTTAGTTTTGTTCTTTTCATGTCCGAGAGACATTTCTGTGGTACAAATAATCCAATTAAATTTGTTTTTTTGACTTTGTCTTCTGCCATTTTTGTTGAACAGATATGGAGTGTTTTGAATCTGAGACGTTACCATGCTGCAGTGCTTAGGTTCTTACCTTTCGAGGTGTTGCGAT</genome_strand>
        <mrna_strand>AAAACCAAAAAGAAATATTTAAGGTTAAGGAGAGCTTCCTCCTTCTCCTACCTCAAAAATTCATCTCTGATTTTGCAATCATCTCAAATTAAATCTCCATTTATTCATAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAGTGTTTTGAATCTGAGACGTTACCATGCTGCAGTGCTTAGGTTCTTACCTTTCGAGGTGTTGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312357" ref_strand="+" ref_description="SGN-U312357        Tomato 200607 #1 [388 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-2 (HSP81-2), nearly identical to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana} | chr5:22704058-22706876 FORWARD | Aliases: MDA7.7, MDA7_7(evalue: 0, score=1133) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 0, score=1194)">
      <seq>gattggcggccaatcggccgaattcccatggggatccgatctcttgcattcgagtccctttgtgttccatttcgccttacagttttcttcagctcgttagatctacaaaaaaatgtcggacgtagagacgtttgctttccaggctgagatcaatcagcttctcagtcttatcatcaacactttctacagcaacaaggagatctttctccgtgaactcatcagcaattcttccgatgctctagacaagatccgctttgagagtttaaccgacaagagcaagctagatggtcaaccagagctcttcatccatattattccagacaaggccaataatactctcactatcattgatagtggtattggtatgacaaaggctgatctggtgaataacctgggtacaattgcaaggtcaggaaccaaggagttcatggaagctcttgcagctggtgctgatgttagcatgattggtcaattcggtgtaggtttctactctgcttacttggtagctgagaaggttgttgtgaccacaaagcacaatgatgatgagcaatatgtctgggagtctcaagccggtggctctttcactgttaccagggatacatctggtgagaaccttggtaggggtaccaagatggtcctttatctcaaggaggatcagcttgaataccttgaagaacgtaggctcaaggacctgattaagaagcactctgagttcattagctatcctatttctctgtgggttgagaagaccatagagaaggaaatttctgatgatgaggaggaagaggagaagaaagatgaggagggaaaggtagaggaggtcgatgaggaaaaggagaaggaagagaagaaaaagaagaaggtcaaagaagtttccaatgagtggtcactggtgaacaagcagaagcctatttggatgagaaagccagaagagatcacaaaggaagagtatgctgctttctacaagagcttgactaatgattgggaagagcatcttgctgtgaagcacttctctgttgagggtcagttggagttcaaggctgtcctttttgttccaaaaagggctccttttgacctctttgacacaaagaagaagcccaacaacatcaagttgtatgttcgccgtgtgtttatcatggataactgtgatgagttgattcctgaatatttgagctttgtgaagggtattgtggattctgaggaccttcctctcaacatctccagagagacattgcagcagaacaagatcctaaaggttattcgcaagaatttggtgaagaagtgtgttgagcttttctttgaaattgctgagaacaaggaggactacaataagttctatgaggcgttctctaaaaacctcaagcttggaatccatgaggattctcagaacagggcaaagtttgctgaactgctgaggtaccactccactaagagtggtgatgagatgaccagcttgaaggactatgtgaccagaatgaaggagggccagaatgatatttactacattactggtgagagcaagaaggctgttgagaactctcccttcctggagaaactgaagaagaagggatatgaggtgctttacatggttgatgccattgatgagtattcaattggtcagctgaaggaatttgagggcaaaaagcttgtttctgctaccaaggaaggcctcaagcttgatgagagtgaagatgagaagaaaaagcaggaagaattgaaggagaagtttgagggactgtgtaaggtgatgaaggatgtgctaggagacaaagttgaaaaggtcattgtttctgaccgtgttgttgactctccctgctgtttggtcactggtgagtatggctggactgctaacatggagagaattatgaaggcacaggcacttagggactccagcatggctggatacatgtctagcaagaagaccatggagatcaacccagagaactccatcatggatgagctaaggaagagggctgatgcagacaagaatgacaagtctgtgaaggacttggttctcttgctttttgagactgcccttctcacctcaggtttcagcctcgaggagccaaacacctttggcaacagaattcacaggatgttgaaactcggtttgagcattgatgaggaaagcggagatgctgatgctgacatgccagcattggaggatcctgaagctgatgctgagggcagcaagatggaggaggttgattaagttcattaatgttttgatagttttatgggttcctttactactactttattccctagtttttgctttatcccatcagaacaatatgtgagggttttaatgccgttcttttagaatggcagttcaatgttaggttataattctcttttttgttttgacattcgtggttgatatagtttattttcttgcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="36653" stop="32588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36353" g_stop="36159" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="235" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35163" g_stop="35022" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="377" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110">
            <donor d_prob="0.229" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34911" g_stop="32888" g_length="2024"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="2401" r_length="2024" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2402" polyA_stop="2451"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U312357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2361</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36353" e_stop="36159"/>
          <exon e_start="35163" e_stop="35022"/>
          <exon e_start="34911" e_stop="32888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGCATTCGAGTCCCTTTGTGTTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGATGTAAGTCTCCGACGGTTTAGTTTTTTTTATCTTCTAGGATACTGTGGTTTTATTGCTCTTTCATAGTTTAAAATTTGATTATTCTAGAGCGATCTGAGCTTTTTTTTATTGTCTTCGGAGAAAGCTTAATGTGATCTATGTGATTTTGAAGTTTGATTATTAGAGAGCAGCATCAATTTTTTTTGAGTTTTTATATGTATTTTGTTGGTGTATAGCTTAACGTGATCTTCTAGGATACTGTAGGTGCTATAATTTTGAAGCAATGATTATTTTAGAGCAGTTTATTTTCTATGTGGAGGTTATATGCTTATCTGTATTGTTGTTGTTGATAGCTTAAGGTGATCTTCCAGCATACACTGTAGTGCTATGGCGCTCTTTGATTATGAACTGTGATTATTTTAGAGCAGCTGAGTATTTTTGTGAGTTTTTTCATATGTATTCTATATATGGATAGCTTGATGTGATTGTCTGGGATACTGCTGTTCCACAGTGCTCTGTCTGGATCGTTCAGAGCTTCTGTTTTGGCATCTTAATACTTAGTTGATAGGAGTGAGTATTTAGCCTGCCGTGTATCTCCAATGGTAATTAAAAATTTGCCTGGTTTGTGTATCGTGTCTTCTAGATACCTAGTCTGAACATATGTATCATCGTAGTGTTATTATATGATTTTCACTATGATATACCATAGTGCCATCGACCTCTGTGACTGCGCAAAATAATTTGAGTAATTTAGAGCACCTAATTCAATGTTCTGCTTTGTCGTCATAATAAGAGTTTATCTAGTTGTCCTATTCTTGTTCAGACTAGGTAATGCAGATACAAGTCTGAATTTTGATTGTCCGATCAGCTAATTAAATCAATATGTTTCTGGTTGAGGGATTCGGTTCTGTTATCTGGATCTATTATATCACAGGAAATGAAATGTTTGTTCTTACTTGGTTGTTAATTGTATGCCATATTTGATATTTTTTTGTATTTTGGGATTATACTTTTAGGCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTGGTAAGTAGTAGGGACATATTGGAAGCTAGAAGCTCAACCAGAGTTTCATCTATATTATCTGTTCTTAATGTTGCATTTCTATTTGCTGACCTTCTTTGTTTTATTTGCAGATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAATTCGGTGTAGGTTTCTACTCTGCTTACTTGGTAGCTGAGAAGGTTGTTGTGACCACAAAGCACAATGATGATGAGCAATATGTCTGGGAGTCTCAAGCCGGTGGCTCTTTCACTGTTACCAGGGATACATCTGGTGAGAACCTTGGTAGGGGTACCAAGATGGTCCTTTATCTCAAGGAGGATCAGCTTGAATACCTTGAAGAACGTAGGCTCAAGGACCTGATTAAGAAGCACTCTGAGTTCATTAGCTATCCTATTTCTCTGTGGGTTGAGAAGACCATAGAGAAGGAAATTTCTGATGATGAGGAGGAAGAGGAGAAGAAAGATGAGGAGGGAAAGGTAGAGGAGGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAAGCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</genome_strand>
        <mrna_strand>CTCTTGCATTCGAGTCCCTTTGTGTTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG..............................................................................................................ATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAATTCGGTGTAGGTTTCTACTCTGCTTACTTGGTAGCTGAGAAGGTTGTTGTGACCACAAAGCACAATGATGATGAGCAATATGTCTGGGAGTCTCAAGCCGGTGGCTCTTTCACTGTTACCAGGGATACATCTGGTGAGAACCTTGGTAGGGGTACCAAGATGGTCCTTTATCTCAAGGAGGATCAGCTTGAATACCTTGAAGAACGTAGGCTCAAGGACCTGATTAAGAAGCACTCTGAGTTCATTAGCTATCCTATTTCTCTGTGGGTTGAGAAGACCATAGAGAAGGAAATTTCTGATGATGAGGAGGAAGAGGAGAAGAAAGATGAGGAGGGAAAGGTAGAGGAGGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAAGCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312352" ref_strand="+" ref_description="SGN-U312352        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein, putative, strong similarity to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | chr5:22698531-22701355 FORWARD | Aliases: MDA7.5, MDA7_5(evalue: 5e-54, score=207) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 8e-61, score=236)">
      <seq>gtgaagatgagaagaaaaagcaggaagaattgaaggagaagtttgagggactgtgtaaggtgatgaaggatgtgctaggagacaaagttgaaaaggtcattgtttctgaccgtgttgttgactctccctgctgtttggtcactggtgagtatggctggactgctaacatggagatcaacccagagaactccatcatggatgagctaaggaagagggctgatgcagacaagaatgacaagtctgtgaaggacttggttctcttgctttttgagactgcccttctcacctcaggtttcagcctcgaggagccaaacacctttggcaacagaattcacaggatgttgaaactcggtttgagcattgatgaggaaagcggagatgctgatgctgacatgccagcattggaggatcctgaagctgatgctgagggcagcaagatggaggaggttgattaagttcattaatgttttgatagttttatgggttcctttactactactttattccctagtttttgctttatcccatcagaacaatatgtgagggttttaatgccgttcttttagaatggcagttcaatgttaggttataattctcttttttgttttgacattcgtggttgatatagtttattttcttgcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="33903" stop="32588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33603" g_stop="33431" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33430" i_stop="33359" i_length="72">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33358" g_stop="32888" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="644" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="674"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U312352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33603" e_stop="33431"/>
          <exon e_start="33358" e_stop="32888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</genome_strand>
        <mrna_strand>GTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAG........................................................................ATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333576" ref_strand="+" ref_description="SGN-U333576        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein, putative, strong similarity to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | chr5:22698531-22701355 FORWARD | Aliases: MDA7.5, MDA7_5(evalue: 1e-12, score=70.9) genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 7e-25, score=117)">
      <seq>ccaaacacctttggcaacagaattcacaggatgttgaaactcggtttgagcattgatgaggaaagcggaaatgctgatgctgacatgccagcattggaggatcctgaagctgatgctgagggcgacaagatggaggatgtggatgaagttcattaatgttatgatagttacatgggttcctttactactactttatgacctagtctttgctttatcccatcagaacaatatgtgagggttctaatgccgaacttttacaatggcaattgaatgggaggatataattctattttttgcattgacattcgtggttgatacaactgattatcttgcccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="33523" stop="32588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33223" g_stop="32888" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333576" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33223" e_stop="32888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</genome_strand>
        <mrna_strand>CCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAAATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCGACAAGATGGAGGATGTGGATGAAGTTCATTAATGTTATGATAGTTACATGGGTTCCTTTACTACTACTTTATGACCTAGTCTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTCTAATGCCGAACTTTTACAATGGCAATTGAATGGGAGGATATAATTCTATTTTTTGCATTGACATTCGTGGTTGATACAACTGATTATCTTGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333565" ref_strand="+" ref_description="SGN-U333565        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-4 (HSP81-4), nearly identical to heat shock protein hsp81.4 (Arabidopsis thaliana) GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | chr5:22694677-22697378 REVERSE | Aliases: MDA7.4, MDA7_4(evalue: 7e-62, score=234) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 8e-63, score=243)">
      <seq>tttgaaattgctgagaacaaggaggactacaataagttctatgaggcgttctctaaaaacctcaagcttggaatccatgaggattctcagaacagggcaaagtttgctgaactgctgaggtaccactccactaagagtggtgatgagatgaccagcttgaaggactatgtgaccagaatgaaggagggccagaatgatatttactacattactggtgagagcaagaaggctgttgagaactctcccttcctggagaaactgaagaagaagggatatgaggtgctttacatggttgatgccattgatgagtattcaattggtcagctgaaggaatttgagggcaaaaagcttgtttctgctaccaaggaaggcctcaagcttgatgagagtgaagatgagaagaaaaagcaggaagaattgaagaagaagacccatggagatcaacccagagaactccatcatggatgagctaaggaagagggctgatgctgagggcagcaagatggaggaggttgattaagttcattaatgttttgatangtttatgggttcctttactactactttattccctagtttttgctttatcccatcaaacaatatgggagggttttaatgccgttcttttagaatggcagttcatgnntaggttataatctcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="34291" stop="32651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33991" g_stop="33562" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33561" i_stop="33368" i_length="194">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33367" g_stop="33316" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="482" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33315" i_stop="33115" i_length="201">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33114" g_stop="32930" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="665" r_length="183" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333565" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33991" e_stop="33562"/>
          <exon e_start="33367" e_stop="33316"/>
          <exon e_start="33114" e_stop="32930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTT</genome_strand>
        <mrna_strand>TTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGAAGAAGA..................................................................................................................................................................................................CCCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGG.........................................................................................................................................................................................................CTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATANGTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCA-AACAATATGGGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCATGNNTAGGTTATAA-TCTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312355" ref_strand="+" ref_description="SGN-U312355        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-2 (HSP81-2), nearly identical to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana} | chr5:22704058-22706876 FORWARD | Aliases: MDA7.7, MDA7_7(evalue: 7e-70, score=261) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 1e-76, score=290)">
      <seq>tttgtgttccatttcgccttacagttttcttcagctcgttagatctacaaaaaaatgtcggacgtagagacgtttgctttccaggctgagatcaatcagcttctcagtcttatcatcaacactttctacagcaacaaggagatctttctccgtgaactcatcagcaattcttccgatgctctagacaagatccgctttgagagtttaaccgacaagagcaagctagatggtcaaccagagctcttcatccatattattccagacaaggccaataatactctcactatcattgatagtggtattggtatgacaaaggctgatctggtgaataacctgggtacaattgcaaggtcaggaaccaaggaaggcctcaagcttgatgagagtgaagatgagaagaaaaagcaggaagaattgaaggagaagtttgagggactgtgtaaggtgatgaaggatgtgctaggagacaaagttgaaaaggtcattgtttctgaccgtgttgttgactctccctgctgtttggtcactggtgagtatggctggactgctaacatggagagaattatgaaggcacaggcacttagggactccagcatggctggatacatgtctagcaagaagaccatggagatcaacccagagaactctatcatggatgagctaaggaagagggctgatgctgacaagaatgacaagtctgtgaaggacttggttctcttgctttttgagactgcccttctcacctcaggtttcagcctcgaggagccaaacacctttggcaacagaatccacaggatgttgaaactcggtttgagcattgatgaggaaagcggagatgctgatgctgacatgccagcattggaggatcctgaagctgatgctgagggcagcaagatggaggaggttgattaagttcattaatgttttgatagttttatgggttcctttactactactttaggcacctagtttttgctttatcccatcagaacaaccatgtgataggggttttaatgcctgttcttttagaattttaaaggtcaatgttagggttataattcttctttttngttttcttaaaacgaggttaatattagtttattttcttgcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="36635" stop="32588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36335" g_stop="36159" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35163" g_stop="35022" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="319" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110">
            <donor d_prob="0.229" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34911" g_stop="34868" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="363" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34867" i_stop="33626" i_length="1242">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33625" g_stop="32947" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="1050" r_length="687" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1113" polyA_stop="1131"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U312355" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>1042</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36335" e_stop="36159"/>
          <exon e_start="35163" e_stop="35022"/>
          <exon e_start="34911" e_stop="34868"/>
          <exon e_start="33625" e_stop="32947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGATGTAAGTCTCCGACGGTTTAGTTTTTTTTATCTTCTAGGATACTGTGGTTTTATTGCTCTTTCATAGTTTAAAATTTGATTATTCTAGAGCGATCTGAGCTTTTTTTTATTGTCTTCGGAGAAAGCTTAATGTGATCTATGTGATTTTGAAGTTTGATTATTAGAGAGCAGCATCAATTTTTTTTGAGTTTTTATATGTATTTTGTTGGTGTATAGCTTAACGTGATCTTCTAGGATACTGTAGGTGCTATAATTTTGAAGCAATGATTATTTTAGAGCAGTTTATTTTCTATGTGGAGGTTATATGCTTATCTGTATTGTTGTTGTTGATAGCTTAAGGTGATCTTCCAGCATACACTGTAGTGCTATGGCGCTCTTTGATTATGAACTGTGATTATTTTAGAGCAGCTGAGTATTTTTGTGAGTTTTTTCATATGTATTCTATATATGGATAGCTTGATGTGATTGTCTGGGATACTGCTGTTCCACAGTGCTCTGTCTGGATCGTTCAGAGCTTCTGTTTTGGCATCTTAATACTTAGTTGATAGGAGTGAGTATTTAGCCTGCCGTGTATCTCCAATGGTAATTAAAAATTTGCCTGGTTTGTGTATCGTGTCTTCTAGATACCTAGTCTGAACATATGTATCATCGTAGTGTTATTATATGATTTTCACTATGATATACCATAGTGCCATCGACCTCTGTGACTGCGCAAAATAATTTGAGTAATTTAGAGCACCTAATTCAATGTTCTGCTTTGTCGTCATAATAAGAGTTTATCTAGTTGTCCTATTCTTGTTCAGACTAGGTAATGCAGATACAAGTCTGAATTTTGATTGTCCGATCAGCTAATTAAATCAATATGTTTCTGGTTGAGGGATTCGGTTCTGTTATCTGGATCTATTATATCACAGGAAATGAAATGTTTGTTCTTACTTGGTTGTTAATTGTATGCCATATTTGATATTTTTTTGTATTTTGGGATTATACTTTTAGGCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTGGTAAGTAGTAGGGACATATTGGAAGCTAGAAGCTCAACCAGAGTTTCATCTATATTATCTGTTCTTAATGTTGCATTTCTATTTGCTGACCTTCTTTGTTTTATTTGCAGATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAATTCGGTGTAGGTTTCTACTCTGCTTACTTGGTAGCTGAGAAGGTTGTTGTGACCACAAAGCACAATGATGATGAGCAATATGTCTGGGAGTCTCAAGCCGGTGGCTCTTTCACTGTTACCAGGGATACATCTGGTGAGAACCTTGGTAGGGGTACCAAGATGGTCCTTTATCTCAAGGAGGATCAGCTTGAATACCTTGAAGAACGTAGGCTCAAGGACCTGATTAAGAAGCACTCTGAGTTCATTAGCTATCCTATTTCTCTGTGGGTTGAGAAGACCATAGAGAAGGAAATTTCTGATGATGAGGAGGAAGAGGAGAAGAAAGATGAGGAGGGAAAGGTAGAGGAGGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAAGCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTC-CCTAGTTTTTGCTTTATCCCATCAGAACAA-TATGTG--A-GGGTTTTAATGCC-GTTCTTTTAGAA--TGGCAGTTCAATGTTAG</genome_strand>
        <mrna_strand>TTTGTGTTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG..............................................................................................................ATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCTATCATGGATGAGCTAAGGAAGAGGGCTGATGCTGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATCCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTAGGCACCTAGTTTTTGCTTTATCCCATCAGAACAACCATGTGATAGGGGTTTTAATGCCTGTTCTTTTAGAATTTTAAAGGTCAATGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333574" ref_strand="-" ref_description="SGN-U333574        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-2 (HSP81-2), nearly identical to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana} | chr5:22704058-22706876 FORWARD | Aliases: MDA7.7, MDA7_7(evalue: 7e-70, score=260) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 6e-75, score=283)">
      <seq>aaaggtcattgtttttgaccgtgttgttgactctccctgctgtttggtcactggtgagtaaggctggactgctaacatggaaagaattatgaaggcacaggcccttagggactccagcatggctggatacatgtttagcaaaaagaccatggagatcaacccaaagaactccatcatggatgagctaaggaaaaggggtgatgcaaacaaaaaagacaagtttgtgaaggacttggttttcttgcttttttagactgcccttttcccctcaggtttcagcctcgaggagccaaacacctttggcaacaaaattcacaggatgttgaaactcggtttgagcattgatgaggaaaacggaaatgctgatgctgacatgccagcattggaggatcctgaaactgatgctgagggcagcaaaatggaggaggttgattaagttcattaatgttttgatagttttatgggttcctttactaatactttattccctagtttttgctttatcccatcaaaacaaaatgtgagggttttaatgccgtttttttaaaatggcagttcaatgttaggttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="33812" stop="32640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33512" g_stop="32947" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="613"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333574" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333574" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33512" e_stop="32947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAG</genome_strand>
        <mrna_strand>AAAGGTCATTGTTTTTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTAAGGCTGGACTGCTAACATGGAAAGAATTATGAAGGCACAGGCCCTTAGGGACTCCAGCATGGCTGGATACATGTTTAGCAAAAAGACCATGGAGATCAACCCAAAGAACTCCATCATGGATGAGCTAAGGAAAAGGGGTGATGCAAACAAAAAAGACAAGTTTGTGAAGGACTTGGTTTTCTTGCTTTTTTAGACTGCCCTTTTCCCCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAAAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAACGGAAATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAACTGATGCTGAGGGCAGCAAAATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTAATACTTTATTCCCTAGTTTTTGCTTTATCCCATCAAAACAAAATGTGAGGGTTTTAATGCCGTTTTTTTAAAATGGCAGTTCAATGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333569" ref_strand="-" ref_description="SGN-U333569        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-2 (HSP81-2), nearly identical to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana} | chr5:22704058-22706876 FORWARD | Aliases: MDA7.7, MDA7_7(evalue: 6e-139, score=490) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 7e-148, score=526)">
      <seq>catgtcagcatcagcatctccgctttcttcatcaatgctcaaaccgagtttcaacatcctgtgaattttgttgccaaaggtgtttggctcctcgaggctgaaacctgaggtgagaagggcagtctcaaaaagcaagagaaccaagtccttcacagacttgtcattcttgtctgcatcagccctcttccttagctcatccatgatggagttctctgggttgatctccatggtcttcttgctagacatgtatccagccatgctggagtccctaagtgcctgtgccttcataattctctccatgttagcagtccagccatactcaccagtgaccaaacagcagggagagtcaacaaaaaggtcatccttcatcaccttacacagtccctcaaacttctccttcaattcttcctgctttttcttctcatcttcactctcatcaagcttgaggccttccttggtagcagaaacaagctttttgccctcaaattccttcagctgaccaattgaatactcatcaatggcatcaaccatgtaaagcacctcatatcccttcttcttcagtttctccaggaagggagagttctcaacagccttcttgctctcaccagtaatgtagtaaatatcattctggccctccttcattctggtcacatagtccttcaagctggtcatctcatcaccactcttagtggagtggtacctcagcagttcagcaaactttgccctgttctgagaatcctcatggattccaagcttgaggtttttagagaacgcctcatagaacttattgtagtcctccttgttctcagcaatttcaaagaaaagctcaacacacttcttcaccaaattcttgcgaataacctttaggatcttgttctgctgcaatgtctctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="32837" stop="34368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33137" g_stop="33493" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33494" i_stop="33529" i_length="36">
            <donor d_prob="0.656" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33530" g_stop="34068" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="896" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U333569" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33137" e_stop="33493"/>
          <exon e_start="33530" e_stop="34068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCAGCATCAGCATCTCCGCTTTCCTCATCAATGCTCAAACCGAGTTTCAACATCCTGTGAATTCTGTTGCCAAAGGTGTTTGGCTCCTCGAGGCTGAAACCTGAGGTGAGAAGGGCAGTCTCAAAAAGCAAGAGAACCAAGTCCTTCACAGACTTGTCATTCTTGTCTGCATCAGCCCTCTTCCTTAGCTCATCCATGATGGAGTTCTCTGGGTTGATCTCCATGGTCTTCTTGCTAGACATGTATCCAGCCATGCTGGAGTCCCTAAGTGCCTGTGCCTTCATAATTCTCTCCATGTTAGCAGTCCAGCCATACTCACCAGTGACCAAACAGCAGGGAGAGTCAACAACACGGTCAGAAACAATGACCTTTTCAACTTTGTCTCCTAGCACATCCTTCATCACCTTACACAGTCCCTCAAACTTCTCCTTCAATTCTTCCTGCTTTTTCTTCTCATCTTCACTCTCATCAAGCTTGAGGCCTTCCTTGGTAGCAGAAACAAGCTTTTTGCCCTCAAATTCCTTCAGCTGACCAATTGAATACTCATCAATGGCATCAACCATGTAAAGCACCTCATATCCCTTCTTCTTCAGTTTCTCCAGGAAGGGAGAGTTCTCAACAGCCTTCTTGCTCTCACCAGTAATGTAGTAAATATCATTCTGGCCCTCCTTCATTCTGGTCACATAGTCCTTCAAGCTGGTCATCTCATCACCACTCTTAGTGGAGTGGTACCTCAGCAGTTCAGCAAACTTTGCCCTGTTCTGAGAATCCTCATGGATTCCAAGCTTGAGGTTTTTAGAGAACGCCTCATAGAACTTATTGTAGTCCTCCTTGTTCTCAGCAATTTCAAAGAAAAGCTCAACACACTTCTTCACCAAATTCTTGCGAATAACCTTTAGGATCTTGTTCTGCTGCAATGTCTCTCTGG</genome_strand>
        <mrna_strand>CATGTCAGCATCAGCATCTCCGCTTTCTTCATCAATGCTCAAACCGAGTTTCAACATCCTGTGAATTTTGTTGCCAAAGGTGTTTGGCTCCTCGAGGCTGAAACCTGAGGTGAGAAGGGCAGTCTCAAAAAGCAAGAGAACCAAGTCCTTCACAGACTTGTCATTCTTGTCTGCATCAGCCCTCTTCCTTAGCTCATCCATGATGGAGTTCTCTGGGTTGATCTCCATGGTCTTCTTGCTAGACATGTATCCAGCCATGCTGGAGTCCCTAAGTGCCTGTGCCTTCATAATTCTCTCCATGTTAGCAGTCCAGCCATACTCACCAGTGACCAAACAGCAGGGAGAGTCAACAAAAAG....................................GTCATCCTTCATCACCTTACACAGTCCCTCAAACTTCTCCTTCAATTCTTCCTGCTTTTTCTTCTCATCTTCACTCTCATCAAGCTTGAGGCCTTCCTTGGTAGCAGAAACAAGCTTTTTGCCCTCAAATTCCTTCAGCTGACCAATTGAATACTCATCAATGGCATCAACCATGTAAAGCACCTCATATCCCTTCTTCTTCAGTTTCTCCAGGAAGGGAGAGTTCTCAACAGCCTTCTTGCTCTCACCAGTAATGTAGTAAATATCATTCTGGCCCTCCTTCATTCTGGTCACATAGTCCTTCAAGCTGGTCATCTCATCACCACTCTTAGTGGAGTGGTACCTCAGCAGTTCAGCAAACTTTGCCCTGTTCTGAGAATCCTCATGGATTCCAAGCTTGAGGTTTTTAGAGAACGCCTCATAGAACTTATTGTAGTCCTCCTTGTTCTCAGCAATTTCAAAGAAAAGCTCAACACACTTCTTCACCAAATTCTTGCGAATAACCTTTAGGATCTTGTTCTGCTGCAATGTCTCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333577" ref_strand="+" ref_description="SGN-U333577        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-2 (HSP81-2), nearly identical to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana} | chr5:22704058-22706876 FORWARD | Aliases: MDA7.7, MDA7_7(evalue: 3e-111, score=398) genbank/nr: Hsp90-2-like(evalue: 3e-115, score=417)">
      <seq>ccatagagacattgcagcagaacaagatcctaaaggttattcgcaagaatttggtgaagaagtgtgttgagcttttctttgaaattgctgagaacaatgaggattctcagaacagggcaaagtttgctgaactgctgaggtaccactccactaagagtggtgatgagatgaccagcttgaaggactatgtgaccagaatgaaggagggccagaatgatatttactacattactggtgagagcaagaaggctgttgagaactctcccttcctggagaaactgaagaagaagggatatgaggtgctttacatggttgatgccattgatgagtattcaattggtcagctgaaggaatttgagggcaaaaagcttgtttctgctaccaaggaaggcctcaagcttgatgagagtgaagatgagaagaaaaagcaggaagaattgaaggagaagtttgagggactgtgtaaggtgatgaaggatgtgctaggagacaaagttgaaaaggtcattgtttctgaccgtgttgttgactctccctgctgtttggtcactggtgagtatggctggactgctaacatggagagaattatgaaggcacaggcacttagggactccagcatggctggatacatgtctagcaagaagaccatggagatcaacccagagaactccatcatggatgagctaaggaagagggctgatgcagacaagaatgacaagtctgtgaaggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="34368" stop="32979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34068" g_stop="33973" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33972" i_stop="33916" i_length="57">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33915" g_stop="33279" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="733" r_length="637" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333577" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34068" e_stop="33973"/>
          <exon e_start="33915" e_stop="33279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTT</genome_strand>
        <mrna_strand>CCATAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACA.........................................................ATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333572" ref_strand="+" ref_description="SGN-U333572        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein, putative, strong similarity to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | chr5:22698531-22701355 FORWARD | Aliases: MDA7.5, MDA7_5(evalue: 6e-46, score=181) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 3e-45, score=185)">
      <seq>ttccatttcgccttacagttttcttcagctcgttagatctacaaaaaaatgtcggacgtagagacgtttgctttccaggctgagatcaatcagcttctcagtcttatcatcaacactttctacagcaacaaggagatctttctccgtgaactcatcagcaattcttccgatgctctagacaagatccgctttgagagtttaaccgacaagagcaagctagatggtcaaccagagctcttcatccatattattccagacaaggccaataatactctcactatcattgatagtggtattggtatgacaaaggctgatctggtgaataacctggagaaactgaagaagaagggatatgaggtgctttacatggttgatgccattgatgagtattcaattggtcagctgaaggaatttgagggcaaaaagcttgtttctgctaccaaggaaggcctcaagcttgatgagagtgaagatgagaagaaaaagcacgaagaattgaaggagaagtttgagggactgtgtaaggtgatgaaggatgtgctaggagacaaagttgaaaaggtcattgtttctgaccgagttgatgactctccctgctgtttggtcactggtgagtatggctggactggctacatggagagaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="36629" stop="33123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36329" g_stop="36159" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35163" g_stop="35022" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="313" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110">
            <donor d_prob="0.229" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34911" g_stop="34894" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="331" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34893" i_stop="33739" i_length="1155">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33738" g_stop="33423" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="647" r_length="316" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333572" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36329" e_stop="36159"/>
          <exon e_start="35163" e_stop="35022"/>
          <exon e_start="34911" e_stop="34894"/>
          <exon e_start="33738" e_stop="33423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGATGTAAGTCTCCGACGGTTTAGTTTTTTTTATCTTCTAGGATACTGTGGTTTTATTGCTCTTTCATAGTTTAAAATTTGATTATTCTAGAGCGATCTGAGCTTTTTTTTATTGTCTTCGGAGAAAGCTTAATGTGATCTATGTGATTTTGAAGTTTGATTATTAGAGAGCAGCATCAATTTTTTTTGAGTTTTTATATGTATTTTGTTGGTGTATAGCTTAACGTGATCTTCTAGGATACTGTAGGTGCTATAATTTTGAAGCAATGATTATTTTAGAGCAGTTTATTTTCTATGTGGAGGTTATATGCTTATCTGTATTGTTGTTGTTGATAGCTTAAGGTGATCTTCCAGCATACACTGTAGTGCTATGGCGCTCTTTGATTATGAACTGTGATTATTTTAGAGCAGCTGAGTATTTTTGTGAGTTTTTTCATATGTATTCTATATATGGATAGCTTGATGTGATTGTCTGGGATACTGCTGTTCCACAGTGCTCTGTCTGGATCGTTCAGAGCTTCTGTTTTGGCATCTTAATACTTAGTTGATAGGAGTGAGTATTTAGCCTGCCGTGTATCTCCAATGGTAATTAAAAATTTGCCTGGTTTGTGTATCGTGTCTTCTAGATACCTAGTCTGAACATATGTATCATCGTAGTGTTATTATATGATTTTCACTATGATATACCATAGTGCCATCGACCTCTGTGACTGCGCAAAATAATTTGAGTAATTTAGAGCACCTAATTCAATGTTCTGCTTTGTCGTCATAATAAGAGTTTATCTAGTTGTCCTATTCTTGTTCAGACTAGGTAATGCAGATACAAGTCTGAATTTTGATTGTCCGATCAGCTAATTAAATCAATATGTTTCTGGTTGAGGGATTCGGTTCTGTTATCTGGATCTATTATATCACAGGAAATGAAATGTTTGTTCTTACTTGGTTGTTAATTGTATGCCATATTTGATATTTTTTTGTATTTTGGGATTATACTTTTAGGCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTGGTAAGTAGTAGGGACATATTGGAAGCTAGAAGCTCAACCAGAGTTTCATCTATATTATCTGTTCTTAATGTTGCATTTCTATTTGCTGACCTTCTTTGTTTTATTTGCAGATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAATTCGGTGTAGGTTTCTACTCTGCTTACTTGGTAGCTGAGAAGGTTGTTGTGACCACAAAGCACAATGATGATGAGCAATATGTCTGGGAGTCTCAAGCCGGTGGCTCTTTCACTGTTACCAGGGATACATCTGGTGAGAACCTTGGTAGGGGTACCAAGATGGTCCTTTATCTCAAGGAGGATCAGCTTGAATACCTTGAAGAACGTAGGCTCAAGGACCTGATTAAGAAGCACTCTGAGTTCATTAGCTATCCTATTTCTCTGTGGGTTGAGAAGACCATAGAGAAGGAAATTTCTGATGATGAGGAGGAAGAGGAGAAGAAAGATGAGGAGGGAAAGGTAGAGGAGGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAAGCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTAT</genome_strand>
        <mrna_strand>TTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG..............................................................................................................ATCTGGTGAATAACCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCACGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGAGTTGATGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGGCTACATGGAGAGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333578" ref_strand="+" ref_description="SGN-U333578        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-4 (HSP81-4), nearly identical to heat shock protein hsp81.4 (Arabidopsis thaliana) GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | chr5:22694677-22697378 REVERSE | Aliases: MDA7.4, MDA7_4(evalue: 6e-94, score=341) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 3e-97, score=358)">
      <seq>atttcgccttacagttttcttcagctcgttagatctacaaaaaaatgtcggacgtagagacgtttgctttccaggctgagatcaatcagcttctcagtcttatcatcaacactttctacagcaacaaggagatctttctccgtgaactcatcagcaattcttccgatgctctagacaagatccgctttgagagtttaaccgacaagagcaagctagatggtcaaccagagctcttcatccatattattccagacaaggccaataatactctcactatcattgatagtggtattggtatgacaaaggctgatctggtgaataacctggataactgtgatgagttgattcctgaatatttgagctttgtgaagggtattgtggattctgaggaccttcctctcaacatctccagagagacattgcagcagaacaagatcctaaaggttattcgcaagaatttggtgaagaagtgtgttgagcttttctttgaaattgctgagaacaaggaggactacaataagttctatgaggcgttctctaaaaacctcaagcttggaatccatgaggattctcagaacagggcaaagtttgctgaactgctgaggtaccactccactaagagtggtgatgagatgaccagcttgaaggactatgtgaccagaatgaaggagggccagaatgatatttactacattactggtgagagcaagaaggctgttgagaactctcccttcctggagaaactgaagaagaagggatatgaggtgctttacatggttgatgccattgatgagtattcaattggtcagctgaaggaatttgagggcaaaaagcttgtttctgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="36625" stop="33330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36325" g_stop="36159" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35163" g_stop="35022" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="309" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110">
            <donor d_prob="0.229" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34911" g_stop="34894" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="327" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34893" i_stop="34150" i_length="744">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34149" g_stop="33630" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="847" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36325" e_stop="36159"/>
          <exon e_start="35163" e_stop="35022"/>
          <exon e_start="34911" e_stop="34894"/>
          <exon e_start="34149" e_stop="33630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGATGTAAGTCTCCGACGGTTTAGTTTTTTTTATCTTCTAGGATACTGTGGTTTTATTGCTCTTTCATAGTTTAAAATTTGATTATTCTAGAGCGATCTGAGCTTTTTTTTATTGTCTTCGGAGAAAGCTTAATGTGATCTATGTGATTTTGAAGTTTGATTATTAGAGAGCAGCATCAATTTTTTTTGAGTTTTTATATGTATTTTGTTGGTGTATAGCTTAACGTGATCTTCTAGGATACTGTAGGTGCTATAATTTTGAAGCAATGATTATTTTAGAGCAGTTTATTTTCTATGTGGAGGTTATATGCTTATCTGTATTGTTGTTGTTGATAGCTTAAGGTGATCTTCCAGCATACACTGTAGTGCTATGGCGCTCTTTGATTATGAACTGTGATTATTTTAGAGCAGCTGAGTATTTTTGTGAGTTTTTTCATATGTATTCTATATATGGATAGCTTGATGTGATTGTCTGGGATACTGCTGTTCCACAGTGCTCTGTCTGGATCGTTCAGAGCTTCTGTTTTGGCATCTTAATACTTAGTTGATAGGAGTGAGTATTTAGCCTGCCGTGTATCTCCAATGGTAATTAAAAATTTGCCTGGTTTGTGTATCGTGTCTTCTAGATACCTAGTCTGAACATATGTATCATCGTAGTGTTATTATATGATTTTCACTATGATATACCATAGTGCCATCGACCTCTGTGACTGCGCAAAATAATTTGAGTAATTTAGAGCACCTAATTCAATGTTCTGCTTTGTCGTCATAATAAGAGTTTATCTAGTTGTCCTATTCTTGTTCAGACTAGGTAATGCAGATACAAGTCTGAATTTTGATTGTCCGATCAGCTAATTAAATCAATATGTTTCTGGTTGAGGGATTCGGTTCTGTTATCTGGATCTATTATATCACAGGAAATGAAATGTTTGTTCTTACTTGGTTGTTAATTGTATGCCATATTTGATATTTTTTTGTATTTTGGGATTATACTTTTAGGCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTGGTAAGTAGTAGGGACATATTGGAAGCTAGAAGCTCAACCAGAGTTTCATCTATATTATCTGTTCTTAATGTTGCATTTCTATTTGCTGACCTTCTTTGTTTTATTTGCAGATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAATTCGGTGTAGGTTTCTACTCTGCTTACTTGGTAGCTGAGAAGGTTGTTGTGACCACAAAGCACAATGATGATGAGCAATATGTCTGGGAGTCTCAAGCCGGTGGCTCTTTCACTGTTACCAGGGATACATCTGGTGAGAACCTTGGTAGGGGTACCAAGATGGTCCTTTATCTCAAGGAGGATCAGCTTGAATACCTTGAAGAACGTAGGCTCAAGGACCTGATTAAGAAGCACTCTGAGTTCATTAGCTATCCTATTTCTCTGTGGGTTGAGAAGACCATAGAGAAGGAAATTTCTGATGATGAGGAGGAAGAGGAGAAGAAAGATGAGGAGGGAAAGGTAGAGGAGGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAAGCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTAC</genome_strand>
        <mrna_strand>ATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG..............................................................................................................ATCTGGTGAATAACCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333570" ref_strand="+" ref_description="SGN-U333570        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-4 (HSP81-4), nearly identical to heat shock protein hsp81.4 (Arabidopsis thaliana) GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | chr5:22694677-22697378 REVERSE | Aliases: MDA7.4, MDA7_4(evalue: 4e-113, score=404) genbank/nr: Hsp90-2-like(evalue: 5e-117, score=424)">
      <seq>tgtcaatgtacgtcaggataaggcataaaagaaaaagaagatagtcggagaactttccaatgactgcgtcactggtgaacaagcgaatccctatgtggatgacgaaagccaaaatagctcacaagggaccagtatgctgctttctccaagatcttgactaaagattgcgaagagcatcttgctgggaatcacttctctgttgagggtcatttggagttccccgctgtcctttttgttccataaagggctccttttgacctctttgacgctgagaaaaaccccgactgcatcaagttgtatgttctccgagagtttatcgtggataactgcgacgagttgattcctgaatatttgagctttgtgaagggtattgtggattctgaggaccttcctctcaacatctccagagagacattgcagcagaacaagatcctaaaggttattcgcaagaatttggtgaagaagtgtgttgagcttttctttgaaattgctgagaacaaggaggactacaataagttctatgaggcgttctctaaaaacctcaagcttggaatccatgaggattctcagaacagggcaaagtttgctgaactgctgaggtaccactccactaagagtggtgatgagatgaccagcttgaaggactatgtgaccagaatgaaggagggccagaatgatatttactacattactggtgagagcaagaaggctgttgagaactctcccttcctggagaaactgaagaagaagggatatgaggtgctttacatggttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="34755" stop="33393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34469" g_stop="33693" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333570" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34469" e_stop="33693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTG-GTCACTGGTGAACAAGCAGAAGCCTATTTGGATGA-GAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGC</genome_strand>
        <mrna_strand>TGTCAATGTACGTCAGGATAAGGCATAAAAGAAAAAGAAGATAGTCGGAGAACTTTCCAATGACTGCGTCACTGGTGAACAAGCGAATCCCTATGTGGATGACGAAAGCCAAAATAGCTCACAAGGGACCAGTATGCTGCTTTCTCCAAGATCTTGACTAAAGATTGCGAAGAGCATCTTGCTGGGAATCACTTCTCTGTTGAGGGTCATTTGGAGTTCCCCGCTGTCCTTTTTGTTCCATAAAGGGCTCCTTTTGACCTCTTTGACGCTGAGAAAAACCCCGACTGCATCAAGTTGTATGTTCTCCGAGAGTTTATCGTGGATAACTGCGACGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333573" ref_strand="+" ref_description="SGN-U333573        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | heat shock protein 81-2 (HSP81-2), nearly identical to SP:P55737 Heat shock protein 81-2 (HSP81-2) {Arabidopsis thaliana} | chr5:22704058-22706876 FORWARD | Aliases: MDA7.7, MDA7_7(evalue: 6e-67, score=251) genbank/nr: gi|38154493|gb|AAR12196.1| molecular chaperone Hsp90-2 [Lycopersicon esculentum] >gi|547683|sp|P36181|HSP80_LYCES Heat shock cognate protein 80 >gi|170456|gb|AAB01376.1| heat shock cognate protein 80 >gi|445601|prf||1909348A heat shock protein hsp80 (evalue: 4e-66, score=254)">
      <seq>ttccatttcgccttacagttctcttcagctcgttagatctacagggaaatgtcggacgtaaagacgtgggctttccatgctgagatcaatcagcttctcagtcttatcatcaacactttctacagcaacaaggagatctttctccgtgaactcatcagcaattcttccgatgctctagacaagatccgctttgagagtttaaccgacaagagcaagctagatggtcaaccagagctcttcatccatattattccagacaaggccaataatactctcactatcattgatagtggtattggtatgacaaaggctgatctggtgaataacctgggtacaattgcaaggtcaggaaccaaggagttcatggaagctcttgcagctggtgctgatgttagcatgattggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="36629" stop="34517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36329" g_stop="36159" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35163" g_stop="35022" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="313" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110">
            <donor d_prob="0.229" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34911" g_stop="34817" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="408" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U333573" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36329" e_stop="36159"/>
          <exon e_start="35163" e_stop="35022"/>
          <exon e_start="34911" e_stop="34817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGATGTAAGTCTCCGACGGTTTAGTTTTTTTTATCTTCTAGGATACTGTGGTTTTATTGCTCTTTCATAGTTTAAAATTTGATTATTCTAGAGCGATCTGAGCTTTTTTTTATTGTCTTCGGAGAAAGCTTAATGTGATCTATGTGATTTTGAAGTTTGATTATTAGAGAGCAGCATCAATTTTTTTTGAGTTTTTATATGTATTTTGTTGGTGTATAGCTTAACGTGATCTTCTAGGATACTGTAGGTGCTATAATTTTGAAGCAATGATTATTTTAGAGCAGTTTATTTTCTATGTGGAGGTTATATGCTTATCTGTATTGTTGTTGTTGATAGCTTAAGGTGATCTTCCAGCATACACTGTAGTGCTATGGCGCTCTTTGATTATGAACTGTGATTATTTTAGAGCAGCTGAGTATTTTTGTGAGTTTTTTCATATGTATTCTATATATGGATAGCTTGATGTGATTGTCTGGGATACTGCTGTTCCACAGTGCTCTGTCTGGATCGTTCAGAGCTTCTGTTTTGGCATCTTAATACTTAGTTGATAGGAGTGAGTATTTAGCCTGCCGTGTATCTCCAATGGTAATTAAAAATTTGCCTGGTTTGTGTATCGTGTCTTCTAGATACCTAGTCTGAACATATGTATCATCGTAGTGTTATTATATGATTTTCACTATGATATACCATAGTGCCATCGACCTCTGTGACTGCGCAAAATAATTTGAGTAATTTAGAGCACCTAATTCAATGTTCTGCTTTGTCGTCATAATAAGAGTTTATCTAGTTGTCCTATTCTTGTTCAGACTAGGTAATGCAGATACAAGTCTGAATTTTGATTGTCCGATCAGCTAATTAAATCAATATGTTTCTGGTTGAGGGATTCGGTTCTGTTATCTGGATCTATTATATCACAGGAAATGAAATGTTTGTTCTTACTTGGTTGTTAATTGTATGCCATATTTGATATTTTTTTGTATTTTGGGATTATACTTTTAGGCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTGGTAAGTAGTAGGGACATATTGGAAGCTAGAAGCTCAACCAGAGTTTCATCTATATTATCTGTTCTTAATGTTGCATTTCTATTTGCTGACCTTCTTTGTTTTATTTGCAGATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAA</genome_strand>
        <mrna_strand>TTCCATTTCGCCTTACAGTTCTCTTCAGCTCGTTAGATCTACAGGGAAATGTCGGACGTAAAGACGTGGGCTTTCCATGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG..............................................................................................................ATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322400" ref_strand="+" ref_description="SGN-U322400        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, probable membrane protein YBL102w, yeast, PIR2:S45393 | chr4:13402572-13404351 REVERSE | Aliases: T15N24.12(evalue: 5e-86, score=314) genbank/nr: gi|18416771|ref|NP_567749.1| expressed protein [Arabidopsis thaliana](evalue: 4e-84, score=314)">
      <seq>attacaataagtaaggaactagaaacggagattattgaagctgtagcggaaaatgagttgccggtaggtgggaaagcaacaagcaattctggtcaccggcggggtctccgtttggatccgatccaaattctccatattcctcagttactttaacactgcgactgtagtcgactcgccggacatagatacacaatgcagaagtggttttcagcgggcagcggcggcggagatgatcgttatgttgagcaacaacaagcttcttcttcaactccttctttgctggctgattggaattcatacgcatcagcaaaatcatcggatgagagctccagcactgcgttcataggcagcttcgatctcgaatccgctgttcgttccgctaacgataccgtttctggcacttttaatgtggtttctaaaggagtgagagacattccagggaacttgcagtccgccactagcaatattccttctgggaaagccctcatgtattttggtctattcatggcgactggagtcttcttcattttcatggcattcactttattccttccagtgatagtattggtgcctcagaaatttgccatttgctttactcttggatgttcgtttatcattgggtcattcttcgcactcaagggcccgaagactcagtttgctcatatgttctcaatggagagactcccttttacgctaggtttcatgggtagcatgattggcactctctacgtttccatggcactccatagctatatcctttcggtgctcttctctgtgattcaggttctggcattagcatactacgcaatatcttactttcccggtggctctgctggcttgaaatttctgtcgtcttctatgatttcttcagtgttgaaatgctttggcaggtgaaggcttgtaacgcgactgtgtcaactttctgcaacattattgttcattagtatacattctgtagttgtagtcttgtattctgaaactatggtgtacaattttgacaaaatttagttaagttctaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="44447" stop="48708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44747" g_stop="45156" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45157" i_stop="47533" i_length="2377">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47534" g_stop="47801" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="678" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47802" i_stop="47894" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47895" g_stop="47999" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="783" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48000" i_stop="48174" i_length="175">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48175" g_stop="48408" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="1017" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1018" polyA_stop="1037"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U322400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1017</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44747" e_stop="45156"/>
          <exon e_start="47534" e_stop="47801"/>
          <exon e_start="47895" e_stop="47999"/>
          <exon e_start="48175" e_stop="48408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACAATAAGTAAGGAACTAGAAACGGAGATTATTGAAGCTGTAGCGGAAAATGAGTTGCCGGTAGGTGGGAAAGCAACAAGCAATTCTGGTCACCGGCGGGGTCTCCGTTTGGATCCGATCCAAATTCTCCATATTCCTCAGTTACTTTAACACTGCGACTGTAGTCGACTCGCCGGACATAGATACACAATGCAGAAGTGGTTTTCAGCGGGCAGCGGCGGCGGAGATGATCGTTATGTTGAGCAACAACAAGCTTCTTCTTCAACTCCTTCTTTGCTGGCTGATTGGAATTCATACGCATCAGCAAAATCATCGGATGAGAGCTCCAGCACTGCGTTCATAGGCAGCTTCGATCTCGAATCCGCTGTTCGTTCCGCTAACGATACCGTTTCTGGCACTTTTAATGTGTAAGTTACTTTCTCATCCTGGAGTCAATTTCCTTTTTATCTGTAATTTGTGCTTTAAAGGAACTGATAGGTAATTCACTAATACTACTCCAATTTTGGCCTCGAGCTGAGGAAGAAAGCTGATAACGAGTACATGTAGCTAAAACGTTCTGTATTAGTCGTAATTCTTGCTGATCCTGTTGGAAATGTTCTGAAATCGACAATATAGTTTGAATTTGGTAGTTTGGATTCCACAGACCCATTGAGATGTGTTATTAATTAAGAATATGGACATTGGATCTAATCAACTCCAAATTTAGCTCATCAGGCGAGTATCGTCGATGGCCATATATCCATTATGTCAGTCAGTAAGAGGCTCTTAACGTTGCAAACTCCTCTTTGCTTTCATGAGATTGTTTTGCTAAATATGTGTATCCACCTAGAAAAACATAATTTGTGGTCTGTTGGATCAGAGTCCGAGATAGAGATAAATTCAACAAATAAGCTTCTAATGACTGACAAAAACAATAAAGATAAGAAGAATTATGTGGTTTGGTGTGATTATGATATGAGTTGAGTTTAAATGAAGCGGTGACGATTCATATAGCTAGTCCAACTTGTTTGAGACTGACGCGTAATTGTTGTTGTATCCCAATGTCTAATTCCTCTGGTTCCATTATGTAGTATCCTGGACTTCTCCTTCTAAAATAGTCTTTCTCATATTTAATTTTGTTGTTCTGCACTCTTATCACATTGATTAGTATCTCATCCCTGACCTTGACTATTAGTCTTCTCAACATTTCTGTATCTTTTGAGATGATTACTCTGAAAGATAGGTTGTTCAAAGGAATTCAGGGATTTTCTCAATAGTGCTTGACAGGTTAGACTGGACAAATTAGAAGTTTGAAACTACAGAATTGTATTTGTTGCTCGCTTCCCAGAAAACAAAATCTGAAATAGTTAGTTTTTAACATAATGGCTAGTTATAAATCAGATCTCACTAAGAAAGGAAAGACTAGCAGTGTAACAAGGTATTGTTTTGCCAACATTGCTTAATAGTGAGTCTCACAAGCAAGGTACAATATTTTCTTGATTCTTACATTTGGAAATGAGCCTAGACCTGAGTATCGATATAGAAATCAATGTTAACTTATATGACACTGATTCCCAGTTGTTGATTGAAAGTCTGATAGTGTTAGCATTTAGCAATGACAAAAACATTAAGGCGTGCAAGCTAATACTTCATTTTATTTTGATGTGCTTTAGGAAATCGTGGGCTCTCAGAGTACTAGACTTGAGTATTGATATAGAAATTATCAGTTAGATGTCCAAATGATACTTGTGTGGGTGGTCCTTTCGTCTAGAAAATTTTCCCTCCTACGAATTATATCACAAAGTTGGAAATTCAGCTTAAAGTAGGCAGGATCCATCATTCAGGATAGCGCTTTGGCCTACTTCTGGGTCTGCCGAGGATAAGGAGAGAAAGTGAGAGCCAATTGAGTTCAGAAGGTAAAAAAACTTACTCCCAAGGAAAAAAGAATCTTTTATCTGATTGATATTTCATGTTGATGGAGCCATTTTCTGGGAGATCATAAATTTGTGCATGTCATGAACCTTATGAGCCTGAATCTGATGTCATAAAAACAAAATACAGAAGTACTTTGTGAAACAGAGAGCTGATTTACTAACATCAAAATTCCTAGTTTCACTCCAAATTGCATAGTGAATGGCACGAGTGAGATAACAATAGGGGTTTTGGGAAGTGAAAACCATGGAGATCTGTAGTTAGCTGGCTAGTATTTATCACTAGAGAAAGAATCCTCTTTTGGTGCAGGTTGTACTCTTTAGTCATAATTTTTTTTTCATAACAATTGTCAATGTTGTGAAATTTAGTTCTTCTGTAACCAAGTAAGATGACACTATAGGTATTGAAAATACAAAAAATTGTAGTTACCTGGTTGGATCTTATCATAGGAGAAAGAATCCTCTTCCAGTACATATTGGAGTCTTCTTGTCGTTGATGGATTTTCATCATACTATTTATCATCATCAATGCTGTGTAAGTCATGATTTTTATCATAATCATCATCAATACTGTGAAGTTATACTCTATGCCGATATCATGTCTTTATTTCGGAGGAGTCCTCTATGGTTGCTTGGTAGACTCCCAAGTCCCAACCTTGTTTCTTCATTCCTTGTTGTATATTGTAATACCACAATACCACATGAATTTATTTCAGACAAATGAAATTCATGGATTGGAGAAAAGCTGTGGATGTGCTGTGAAATGTTATATGGAAAATGTATTTCTTCCCTGCTTTTTGAATAAGTTGACATGTTGAGGAGTTCTTTGACTATTGTTTTGATGACAGAATATTGGTTATTGATCCTTATTCAGGGTTTCTAAAGGAGTGAGAGACATTCCAGGGAACTTGCAGTCCGCCACTAGCAATATTCCTTCTGGGAAAGCCCTCATGTATTTTGGTCTATTCATGGCGACTGGAGTCTTCTTCATTTTCATGGCATTCACTTTATTCCTTCCAGTGATAGTATTGGTGCCTCAGAAATTTGCCATTTGCTTTACTCTTGGATGTTCGTTTATCATTGGGTCATTCTTCGCACTCAAGGGCCCGAAGACTCAGTTTGCTCATATGTTCTCAATGGAGGTATTTTTTTTCCCCTTTACAACTGGTCTATGGTGCTGTGTATTTCGTGCTTAATGTCCTCTAAATCTTTGTTTACCCCGTAATTTGTACCAGAGACTCCCTTTTACGCTAGGTTTCATGGGTAGCATGATTGGCACTCTCTACGTTTCCATGGCACTCCATAGCTATATCCTTTCGGTGCTCTTCTCTGTGATTCAGGTAACTTGAACTTCCAGTGTTCTTTTCCTCCCCTTTTTGGTTCTGTTTCTTCTTTCATCTTTTGCAGTTATTGTCTATCGCATGATTTATTCTCGTCTCTCTGTCTAAAGTTTCTTACTTCCAGTTTTCAACTGCTGAAAGCAATTATTGTTGTCTCACTTCCCTGTCATTTCAGGTTCTGGCATTAGCATACTACGCAATATCTTACTTTCCCGGTGGCTCTGCTGGCTTGAAATTTCTGTCGTCTTCTATGATTTCTTCAGTGTTGAAATGCTTTGGCAGGTGAAGGCTTGTAACGCGACTGTGTCAACTTTCTGCAACATTATTGTTCATTAGTATACATTCTGTAGTTGTAGTCTTGTATTCTGAAACTATGGTGTACAATTTTGACAAAATTTAGTTAAGTTCT</genome_strand>
        <mrna_strand>ATTACAATAAGTAAGGAACTAGAAACGGAGATTATTGAAGCTGTAGCGGAAAATGAGTTGCCGGTAGGTGGGAAAGCAACAAGCAATTCTGGTCACCGGCGGGGTCTCCGTTTGGATCCGATCCAAATTCTCCATATTCCTCAGTTACTTTAACACTGCGACTGTAGTCGACTCGCCGGACATAGATACACAATGCAGAAGTGGTTTTCAGCGGGCAGCGGCGGCGGAGATGATCGTTATGTTGAGCAACAACAAGCTTCTTCTTCAACTCCTTCTTTGCTGGCTGATTGGAATTCATACGCATCAGCAAAATCATCGGATGAGAGCTCCAGCACTGCGTTCATAGGCAGCTTCGATCTCGAATCCGCTGTTCGTTCCGCTAACGATACCGTTTCTGGCACTTTTAATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCTAAAGGAGTGAGAGACATTCCAGGGAACTTGCAGTCCGCCACTAGCAATATTCCTTCTGGGAAAGCCCTCATGTATTTTGGTCTATTCATGGCGACTGGAGTCTTCTTCATTTTCATGGCATTCACTTTATTCCTTCCAGTGATAGTATTGGTGCCTCAGAAATTTGCCATTTGCTTTACTCTTGGATGTTCGTTTATCATTGGGTCATTCTTCGCACTCAAGGGCCCGAAGACTCAGTTTGCTCATATGTTCTCAATGGAG.............................................................................................AGACTCCCTTTTACGCTAGGTTTCATGGGTAGCATGATTGGCACTCTCTACGTTTCCATGGCACTCCATAGCTATATCCTTTCGGTGCTCTTCTCTGTGATTCAG...............................................................................................................................................................................GTTCTGGCATTAGCATACTACGCAATATCTTACTTTCCCGGTGGCTCTGCTGGCTTGAAATTTCTGTCGTCTTCTATGATTTCTTCAGTGTTGAAATGCTTTGGCAGGTGAAGGCTTGTAACGCGACTGTGTCAACTTTCTGCAACATTATTGTTCATTAGTATACATTCTGTAGTTGTAGTCTTGTATTCTGAAACTATGGTGTACAATTTTGACAAAATTTAGTTAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344595" ref_strand="+" ref_description="SGN-U344595        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G26540.1 | Symbol: None | protein kinase family protein, Three false introns were added with non-consensus splice sites to circumenvent frameshifts likely due to sequencing errors; this is extremely unusual and is under investigation. | chr4:13394528-13398097 REVERSE | Aliases: M3E9.30, M3E9_30 (evalue: 5e-119, score=424) genbank/nr: gi|30687259|ref|NP_567748.2| receptor protein kinase - like protein [Arabidopsis thaliana](evalue: 4e-117, score=424)">
      <seq>gcaatttagacgttctcacgaaccttcaaaaccttgtttcactcaacatatcattcaatgacttctatggaaaacttcccaattctccattctttcataagcttcctttgagtgatcttactggaaaccaagctctatacatttctggtggggacgtgatccaaacggggcctgctggacatgccaaaaccaccatgaagcttgctatgtcaatcctagtcagtataagtgctgtgctggttctgctagccatctacacgttgatcaggatgagaatggccgcaaagtatggaccagaagttgatacatgggaaatgactctttaccagaagttggacttttcaatagatgacattgttcataatctaacgtcagctaatgtcattggcactgggagctctggggttgtatacagaataatgaccgaaaatggggtgactttagcagtcaagaaaatgtggtcatcagagaaatcaggagcatttggttcagaaattcaaacacttggttcaatccggcacaagaacatcgtacgccttctcggctgggcttcaaaccagaacatgaagcttctgttctatgactaccttcccaatgggagtttgagctcattactccatggtgttggcaaaggagcagcagaatgggaaaacagatttgatgtagtccttggagtagcccatgcacttgcatacttgcatcatgactgtgtaccccctataatgcatggagatgtcaaagcaatgaatgtattgttaggctctagaatggagccttacctggccgatttcgggttggcaaagattgtcaacactgatgttgatgcagacttgttaaaggagagtcaaaggcctcatcttgctggttcttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="56544" stop="58017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56844" g_stop="57717" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U344595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56844" e_stop="57717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTAGACGTTCTCACGAACCTTCAAAACCTTGTTTCACTCAACATATCATTCAATGACTTCTATGGAAAACTTCCCAATTCTCCATTCTTTCATAAGCTTCCTTTGAGTGATCTTACTGGAAACCAAGCTCTATACATTTCTGGTGGGGACGTGATCCAAACGGGGCCTGCTGGACATGCCAAAACCACCATGAAGCTTGCTATGTCAATCCTAGTCAGTATAAGTGCTGTGCTGGTTCTGCTAGCCATCTACACGTTGATCAGGATGAGAATGGCCGCAAAGTATGGACCAGAAGTTGATACATGGGAAATGACTCTTTACCAGAAGTTGGACTTTTCAATAGATGACATTGTTCATAATCTAACGTCAGCTAATGTCATTGGCACTGGGAGCTCTGGGGTTGTATACAGAATAATGACCGAAAATGGGGTGACTTTAGCAGTCAAGAAAATGTGGTCATCAGAGAAATCAGGAGCATTTGGTTCAGAAATTCAAACACTTGGTTCAATCCGGCACAAGAACATCGTACGCCTTCTCGGCTGGGCTTCAAACCAGAACATGAAGCTTCTGTTCTATGACTACCTTCCCAATGGGAGTTTGAGCTCATTACTCCATGGTGTTGGCAAAGGAGCAGCAGAATGGGAAAACAGATTTGATGTAGTCCTTGGAGTAGCCCATGCACTTGCATACTTGCATCATGACTGTGTACCCCCTATAATGCATGGAGATGTCAAAGCAATGAATGTATTGTTAGGCTCTAGAATGGAGCCTTACCTGGCCGATTTCGGGTTGGCAAGGATTGTCAACACTGATGTTGATGCAGACTTGTTAAAGGAGAGTCAAAGGCCTCATCTTGCTGGTTCTTATGG</genome_strand>
        <mrna_strand>GCAATTTAGACGTTCTCACGAACCTTCAAAACCTTGTTTCACTCAACATATCATTCAATGACTTCTATGGAAAACTTCCCAATTCTCCATTCTTTCATAAGCTTCCTTTGAGTGATCTTACTGGAAACCAAGCTCTATACATTTCTGGTGGGGACGTGATCCAAACGGGGCCTGCTGGACATGCCAAAACCACCATGAAGCTTGCTATGTCAATCCTAGTCAGTATAAGTGCTGTGCTGGTTCTGCTAGCCATCTACACGTTGATCAGGATGAGAATGGCCGCAAAGTATGGACCAGAAGTTGATACATGGGAAATGACTCTTTACCAGAAGTTGGACTTTTCAATAGATGACATTGTTCATAATCTAACGTCAGCTAATGTCATTGGCACTGGGAGCTCTGGGGTTGTATACAGAATAATGACCGAAAATGGGGTGACTTTAGCAGTCAAGAAAATGTGGTCATCAGAGAAATCAGGAGCATTTGGTTCAGAAATTCAAACACTTGGTTCAATCCGGCACAAGAACATCGTACGCCTTCTCGGCTGGGCTTCAAACCAGAACATGAAGCTTCTGTTCTATGACTACCTTCCCAATGGGAGTTTGAGCTCATTACTCCATGGTGTTGGCAAAGGAGCAGCAGAATGGGAAAACAGATTTGATGTAGTCCTTGGAGTAGCCCATGCACTTGCATACTTGCATCATGACTGTGTACCCCCTATAATGCATGGAGATGTCAAAGCAATGAATGTATTGTTAGGCTCTAGAATGGAGCCTTACCTGGCCGATTTCGGGTTGGCAAAGATTGTCAACACTGATGTTGATGCAGACTTGTTAAAGGAGAGTCAAAGGCCTCATCTTGCTGGTTCTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342230" ref_strand="+" ref_description="SGN-U342230        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | regulatory protein RecX family protein, contains Pfam PF02631: regulatory protein RecX | chr3:4264311-4266369 REVERSE | Aliases: None(evalue: 8e-24, score=107) genbank/nr: gi|18399925|ref|NP_566448.1| expressed protein [Arabidopsis thaliana](evalue: 6e-22, score=107)">
      <seq>taaaattggtcttcaagaatgacgaagctggtgaagagcaagaatcaagagaatcaggacatgctatatcaaaaccgtctctggatcaattatatgtccaggcatctaaacagtggcttaaagggcaagatatgcctagagaaaaacgtaaagcaaggattattcgttggcttcagtatcgtggctttgattggagcgtggttagtttcatacttaagaagttagaatccagccatcctcaatagagtccctttactcagcgaaagggattataatgatctgtttgatgttgccttaactcgatgaggtagacgagctcttcctactgtaaaatggcccttagtggaagtacaaggaactgtgtcaattattcggtctatttttgccatctcaaaaatagttttcaagtgttaagatcaatacagaaggcaagaagtcaagagccctaaagtctttttgtatcaggaagtgagcagtttcactggaagtaaattgtactgtattttgccacattaaccagattgtaaataagaatgttcccatttttaactttnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="60351" stop="59199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60051" g_stop="59499" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="564"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U342230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60051" e_stop="59499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGGTCTTCAAGAATGACGAAGCTGGTGAAGAGCAAGAATCAAGAGAATCAGGACATGCTATATCAAAACCGTCTCTGGATCAATTATATGTCCAGGCATCTAAACAGTGGCTTAAAGGGCAAGATATGCCTAGAGAAAAACGTAAAGCAAGGATTATTCGTTGGCTTCAGTATCGTGGCTTTGATTGGAGCGTGGTTAGTTTCATACTTAAGAAGTTAGAATCCAGCCATCCTCAATAGAGTCCCTTTACTCAGCGAAAGGGATTATAATGATCTGTTTGATGTTGCCTTAACTCGATGAGGTAGACGAGCTCTTCCTACTGTAAAATGGCCCTTAGTGGAAGTACAAGGAACTGTGTCAATTATTCGGTCTATTTTTGCCATCTCAAAAATAGTTTTCAAGTGTTAAGATCAATACAGAAGGCAAGAAGTCAAGAGCCCTAAAGTCTTTTTGTATCAGGAAGTGAGCAGTTTCACTGGAAGTAAATTGTACTGTATTTTGCCACATTAACCAGATTGTAAATAAGAATGTTCCCATTTTTAACTTT</genome_strand>
        <mrna_strand>TAAAATTGGTCTTCAAGAATGACGAAGCTGGTGAAGAGCAAGAATCAAGAGAATCAGGACATGCTATATCAAAACCGTCTCTGGATCAATTATATGTCCAGGCATCTAAACAGTGGCTTAAAGGGCAAGATATGCCTAGAGAAAAACGTAAAGCAAGGATTATTCGTTGGCTTCAGTATCGTGGCTTTGATTGGAGCGTGGTTAGTTTCATACTTAAGAAGTTAGAATCCAGCCATCCTCAATAGAGTCCCTTTACTCAGCGAAAGGGATTATAATGATCTGTTTGATGTTGCCTTAACTCGATGAGGTAGACGAGCTCTTCCTACTGTAAAATGGCCCTTAGTGGAAGTACAAGGAACTGTGTCAATTATTCGGTCTATTTTTGCCATCTCAAAAATAGTTTTCAAGTGTTAAGATCAATACAGAAGGCAAGAAGTCAAGAGCCCTAAAGTCTTTTTGTATCAGGAAGTGAGCAGTTTCACTGGAAGTAAATTGTACTGTATTTTGCCACATTAACCAGATTGTAAATAAGAATGTTCCCATTTTTAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340477" ref_strand="+" ref_description="SGN-U340477        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | regulatory protein RecX family protein, contains Pfam PF02631: regulatory protein RecX | chr3:4264311-4266369 REVERSE | Aliases: None(evalue: 1e-31, score=133) genbank/nr: gi|9294525|dbj|BAB02788.1| contains similarity to regulatory protein RecX~gene_id:MDC11.2 [Arabidopsis thaliana](evalue: 9e-30, score=133)">
      <seq>aagcttcaatcctgtttcattctagagccattatcatcccctgggtgcagaagttcagtgccataagctgctcccgaggcagagattatagcgcttttccagtcaggcacatccccaagagatctaatgaaagccaagagtcagaatctgctttgccaaagaagcactttttggacatcgaaaaaaacagcttcttaaacaggaaagttcaggaaactgaattttctgtcggtggtggagggtcgaagtacggagatataccttttcattccaagtctcgaaatcataagcaaaagcttatcaccagcttagatgatgaggttgaatgggggaaggaagatgaagttgatgaagattttgtacttgaacatggtatagctgaaactgataaagctaggcaagatgctgagacaatcgcagttcgattacttgcttcaagagcacttacggctgtagaactgcagaagaagctcatgggaagaaagtttacagtcaatgttgttaatgctgtaataacagatttccataccaggggtttaatcaatgacggtctgtatgctgaaatgttttctcggtccagatggtcttcctcaagttggggtccacgacgaatcaagcaagccttgatcaagaagggntgtagtgaagtggatgcagnnacatgccataaattggtcttcaagaatgacgaagctggtgaagagcaagaatcaagagaatcaggacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="63249" stop="59688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62949" g_stop="62907" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62906" i_stop="61802" i_length="1105">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61801" g_stop="61515" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="330" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61514" i_stop="61427" i_length="88">
            <donor d_prob="0.694" d_score="1.00"/>
            <acceptor a_prob="0.742" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61426" g_stop="61318" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="439" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61317" i_stop="60988" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60987" g_stop="60895" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="532" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60894" i_stop="60596" i_length="299">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60595" g_stop="60508" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="620" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60507" i_stop="60098" i_length="410">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60097" g_stop="59988" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="730" r_length="110" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U340477" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62949" e_stop="62907"/>
          <exon e_start="61801" e_stop="61515"/>
          <exon e_start="61426" e_stop="61318"/>
          <exon e_start="60987" e_stop="60895"/>
          <exon e_start="60595" e_stop="60508"/>
          <exon e_start="60097" e_stop="59988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAATCCTGTTTCATTCTAGAGCCATTATCATCCCCTGGTTAGCAATTTTCCTCACTTGAAGAATTTATAGTAAATTCTTTATACTAGTAGCTGCAACTATGTTTACTAGAGTTCTGTCATGTTCACACATATTACTGCATTTTTTGATGTTATAGAATAGTATTTTTATAACCTGACATTTCTTTTAAGTGCTTCTGTGATTCTGTGAAGTGGGTTGGTTAAGAAAAGATTTAATTTTCATGGAAAAAATGACTATAGAAAAGATAACAGCAGTTAATTGTCCAAATTGTTGAAAATGGGTAGTTGTGTTATGTTGGGTTTTATTAGAGAAAAGGTCTGATCTTTAGGACAAATATGACCATAGGAAGAGATTACTGCAGTTCATTCTCCAAATTCTTGAAATGGGTATTTGTGTGAGTGGATTTAGTGAAGAGAAGGTTTGATTTTGTAGGCCAAATGTGACCATCGAAAAGATTATTACAGTTCATTGTCCAAATTATCAAAATGGGTAGTTGTGTTACGTGGGGTTTTTAGTGAAAAGGTTTGATCTCTAGGACAAACATGACAATAGGAAGAGATTACAGCAGTTCATTCTCCCAATTCTTGAAATTGGTACTTGTGTTAAATGGATTCGTGAAGAAAAGGTTTGAATAAGTTCTTGTGTTATGTGCATTGGTTAAAAAAGGTTTGATCTTTAGGTAAGCATGATCATTTAACTAAAAGAGTACCGCTGTTTATTCTCGAAATTCTTGAAATGGTTACTTCTGTTACATGAATCTGTGAAGCTAAGATTTGATCTTTAGAGCAAATTTGACCATAGAAAATATTAGGACAGTTCATTCTTCAACTTCTCGAAATGAGTTCTTGTATTACGTGGATTTGTTAAAGCAAATTTGAAATTTATTGTGCAAACCTGCACATAGAAATGATCTAGACAGTCGTTCTCAAAATTCTTGAAATCGATACCTGCGTCTCATGGTTTGGCTAAGCAAAGCTTTGATATTTAGGGCAAATATGGCCATGAAATATAGTACAGCTCATACACATTTATTGAAATGGGCATATAACTATGGTTGGCTTTGTATGTATGTTAGTCCAATAAAATGGTTTGTTTTAGTATGATATGAATATATGATTATTAGGGTGCAGAAGTTCAGTGCCATAAGCTGCTCCCGAGGCAGAGATTATAGCGCTTTTCCAGTCAGGCACATCCCCAAGAGATCTAATGAAAGCCAAGAGTCAGAATCTGCTTTGCCAAAGAAGCACTTTTTGGACATCGAAAAAAACAGCTTCTTAAACAGGAAAGTTCAGGAAACTGAATTTTCTGTCGGTGGTGGAGGGTCGAAGTACGGAGATATACCTTTTCATTCCAAGTCTCGAAATCATAAGCAAAAGCTTATCACCAGCTTAGATGATGAGGTTGAATGGGGTATGGTTGAATCGATTCACATCTCTCTGTTGTTTTTACCTGTAGTGGAAACTCAAATTCAAATAAGAGGCTGAATATGGAATTTCAGGGAAGGAAGATGAAGTTGATGAAGATTTTGTACTTGAACATGGTATAGCTGAAACTGATAAAGCTAGGCAAGATGCTGAGACAATCGCAGTTCGATTACTTGCTTCAAGGTTGGAATATTAAATGTCTCGTCTCTCTCTATCTGGTCGTTATTATTTGCAGTCAACTATTGTTAGCTCACTGCACTGATCTTACTTGCAACCTGAGTGTTGGTGACTCTGACTCTCTAAGTTTTATATTTTCATCTCCTTAATTATATACTGGCATACCACATAAAGTTGTGTGAGCGTTGATTTCACTTTAGATGCGTGAACTATGAAACTGTTAGAACCTTGCTGATGCACATAAATTATCTTTCCAACTATTGAAGTTAAGAAAAGAGGTCCTCACACTGATGCAAAGAGAACCACTTTTTTGATGCATGCTTTTTTACTGTGCAGAGCACTTACGGCTGTAGAACTGCAGAAGAAGCTCATGGGAAGAAAGTTTACAGTCAATGTTGTTAATGCTGTAATAACAGATTTCCATACCAGGTAAATCAAACTGGAATCTTGATGTTCCCATCATAGTTATCAACCACGTCTTCGATAATACAGAAATGTTATTTCAAGTCTCTGTTACATTTTGGCTATTGGTACTCATTTGTCACTTGTTCACCTACATTTTTCTATTGTTATCTAGAGTGAAGTGCTACACTTAAACTTGCTAAAAGGAAAATTGAAGAACATAATGCAATAGGTTTTATCAGTCATTTATGAGTTTGTATTTCACTGATCCATCTTAATTTCATCATAATTGGCCTCATCTGGATTTGTTCTGTGTATTGCTCTAGGGGTTTAATCAATGACGGTCTGTATGCTGAAATGTTTTCTCGGTCCAGATGGTCTTCCTCAAGTTGGGGTCCACGACGAATCAAGCAAGTAAATTTTTCTCTTTGTGAACTGCTTCACTTATTGAGATTTTGAGCCTACTTTTTATTTTTTTGGCCCATCCATTAGGAGCATGTGAGAGCATATATGCTTCTTGTGGAATCCTAAGTTGACTACTTTATGAGAAGAAATAAAAAAATGTTAACATCATAATGAAGTGCAATTATGGAAGTAGTCATTTGTTTAGCTATTTCAGCATTCTGGTAGCCGACCTCAACTTATTCGTGACTGAGGCATTGTTGTAGTTGTTGTAGTCCAAGCATCTGGTGCTTTATTAGTTTTTTTGAGTAGTTACACTCTTTTTCATTCTTTCTATCCTGCAGTTTATCAAATAGAAGAGTAGCTTTGGTCCCTTTATTTTTGTTAGAACCCTATTGAATGGCCTTGCCATTTTTTGTTAGGCCTTGATCAAGAAGGG-TGTAAGTGAAGTGGATGCAGACA-ATGCCATAAAATTGGTCTTCAAGAATGACGAAGCTGGTGAAGAGCAAGAATCAAGAGAATCAGGACATGC</genome_strand>
        <mrna_strand>AAGCTTCAATCCTGTTTCATTCTAGAGCCATTATCATCCCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAGAAGTTCAGTGCCATAAGCTGCTCCCGAGGCAGAGATTATAGCGCTTTTCCAGTCAGGCACATCCCCAAGAGATCTAATGAAAGCCAAGAGTCAGAATCTGCTTTGCCAAAGAAGCACTTTTTGGACATCGAAAAAAACAGCTTCTTAAACAGGAAAGTTCAGGAAACTGAATTTTCTGTCGGTGGTGGAGGGTCGAAGTACGGAGATATACCTTTTCATTCCAAGTCTCGAAATCATAAGCAAAAGCTTATCACCAGCTTAGATGATGAGGTTGAATGGG........................................................................................GGAAGGAAGATGAAGTTGATGAAGATTTTGTACTTGAACATGGTATAGCTGAAACTGATAAAGCTAGGCAAGATGCTGAGACAATCGCAGTTCGATTACTTGCTTCAAG..........................................................................................................................................................................................................................................................................................................................................AGCACTTACGGCTGTAGAACTGCAGAAGAAGCTCATGGGAAGAAAGTTTACAGTCAATGTTGTTAATGCTGTAATAACAGATTTCCATACCAG...........................................................................................................................................................................................................................................................................................................GGGTTTAATCAATGACGGTCTGTATGCTGAAATGTTTTCTCGGTCCAGATGGTCTTCCTCAAGTTGGGGTCCACGACGAATCAAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGATCAAGAAGGGNTGT-AGTGAAGTGGATGCAGNNACATGCCAT-AAATTGGTCTTCAAGAATGACGAAGCTGGTGAAGAGCAAGAATCAAGAGAATCAGGACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323792" ref_strand="+" ref_description="SGN-U323792        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative, similar to SP:O65583 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}; contains Pfam profile PF00485: Phosphoribulokinase / Uridine kinase family | chr1:20864294-20867932 FORWARD | Aliases: None(evalue: 7e-106, score=380) genbank/nr: Phosphoribosyltransferase;(evalue: 3e-106, score=387)">
      <seq>tcataaatacacactactgttcattgtatctttctttcttcttctccgactaatttcaaatctcaaataaatcttccccaaatttagaaagaacaaacaagcttcagagcttaaaaccaacagatgggttcaaatgcagttgatgatttgatagaagcgtcatcaggagttcattattctgggttccatatggagcagccacgtactccagaaattgagcaaccaacaacctctatagatgatagttttcataagcaacccttcatcattggcgttgctggaggtgctgcatctggcaagacaacagtttgtgatttaattattgagcagcttcgtgatcagcgagttgtactagttaaccaggattctttttatcatactttgactcctgaagaactgacaaaagttcatgagtacaactttgaccatcctgatgcatttgacaccgaaaaattgttgcgtgtggtggaggaattgaagcaggggcaagcagtagatattccaaaatatgattttaagagttacaaaaatgacgtattccctcttcgaagggtcaatccttcagatgttataatcttggaaggcatactcatctttcacgatccacgtgtccgagatctgatgaatatgaagatatttgttgatacagatgctgatgtacgtcttgcgaggagaataagacgtgacacagctgaaaagggaagagatattagtatggtgcttgatcagtactctaagtttgtgaaagctgcttttgatgacttcattcttcctacaaagaagtatgctgatgttatcattccccgaggtggagacaatcatgttgctatcgattggattgtgcaacacattcggacaaaacttggtcaacatgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="80647" stop="87087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80947" g_stop="81053" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81054" i_stop="83016" i_length="1963">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83017" g_stop="83180" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="271" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83181" i_stop="84028" i_length="848">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84029" g_stop="84120" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="363" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84121" i_stop="84659" i_length="539">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84660" g_stop="84729" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="433" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84730" i_stop="85192" i_length="463">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85193" g_stop="85311" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="552" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85312" i_stop="85646" i_length="335">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85647" g_stop="85743" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="649" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85744" i_stop="86006" i_length="263">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86007" g_stop="86086" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="729" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86087" i_stop="86636" i_length="550">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86637" g_stop="86787" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="880" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U323792" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80947" e_stop="81053"/>
          <exon e_start="83017" e_stop="83180"/>
          <exon e_start="84029" e_stop="84120"/>
          <exon e_start="84660" e_stop="84729"/>
          <exon e_start="85193" e_stop="85311"/>
          <exon e_start="85647" e_stop="85743"/>
          <exon e_start="86007" e_stop="86086"/>
          <exon e_start="86637" e_stop="86787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAATACACACTACTGTTCATTGTATCTTTCTTTCTTCTTCTCCGACTAATTTCAAATCTCAAATAAATCTTCCCCAAATTTAGAAAGAACAAACAAGCTTCAGGTATCATCAATCTTCTTTTTATGTATACTTTTTATCTGTAAATCTGCATTCACGTTATCAATTTATGCTTTTCCAGTTGTTACGAGCTGTTTATGTTTATTGTTCAGTTCAATTTTGAATCTAGAAAGTTTGTTTTACGATCTATAATCCGTATTTGCTGATTAATTTGATTGTTTCTAGAGTTTTTTTGATTTCTAGTTTAATTTGATGATTGTGCTATTTCCTGTTCCTCATAGCTTGGTAACGTCGGGGATGTTTGGTTATGGTGGAGGATCGTGGATGTGTGAGCTGAGGCTGATTGTGAAGTGAGTTATAGTGTGATGTTTTATGAGTTTGAAGTAGGATGAAGCAATGTCATGTATGTCTATTTAGGTGAGAGATAGATTATACAAATTTACTAGGAGATGTACTAGAAGCAGTGGTTATGTAACTTGCTATCGTCTAGACTCATTAAGATCTATGAATTATATTTACTCAAACGATGTAGCAGATCATGTTCAATATCGTATATACGAGGAGGTTGCTGCGTGTTGATGTATATCCATTTAGGATTCAGATTATCACATATTATTTTGATGGGAACTTAAATGGAACGCGAATATGATGGGTTAGAGGTTGGAGTTGAAGGAAAGAAAGTGATGGTGCAGGGGTTGACGGTTTCCAGAATACAGTTGGGGTGTTTGAGCTAATGTTAGTGAGCTAAACTGTGGCTATAATTCTCTATCTAGAGATATGCATTATGCATTGTTGAATTCCCTTGCACTCAAGGGTGTAGCCTAGTGGTCTATGAAGTGGGTAGATAATCTTGAGGTCCTAGGTTCAAATTCTAGTGGAAACAAAAACTACTAGGTGATTTCTTCGCATTTGCCTAAGCTTTGGTGGGAAGAGTTACTGGGTACTTGTATGGGTGGGTAATCGGTGGAATAGTCGAGGTGTGCACAAGCTAGCTCATGAGGTTAGAATTGCCTAAAATCTTGTAAGGAATGCAACAAGTTCCACATTCCACTCGATGTGGGAATGCAACAAGTTCCAAATTAGAATATCAACTATGGCATTCCATAATCTTTTCAAATATCATTGTATAAATTCCTTGCCCCAATCCCGCAATGATGACCAAGTTGGTTGAGCGAGTGATCTCCCAAATGGAGGGTTTCAGGTTCGAACCCCCCTACATACTTTCTTGGTGAAACTCGTTGTGTGGGGCTTGCCAGTTTACCTCTCTTGTGTGATTGGCGAGCTAATTGGAGCAGGGCTGCAAGTTCCCTTGACAAAAACAACCTAGCTCCACCATTGCAAACTTGATCATTTTCCTATACACATTGTCTTACTTATGCACACTTAAGTATCAAGGAATCATGAAGAATGGACTTCAGTTTCTTGATATCCAACTGAGTTGGTCTCACAAGATACCACGGTAGGCCGATATGAGTGGATTCTTTTGCAGAATTAGCTTTCTTGGAGACATAATTAATTCCTTTTTGATGCTTGGGCCATAACTTTTGAAGGTGTTTGCCTAGGCACCAAGATAAGCCAACCCACTATAAAGCCTAGATGTTTAATGTGTCTGCTAAACTTTTATCTCTTTGATTCATAACTTCCCTCTTGTACACTAAAAATGCATAATTCAGACGTAAATGTGTCATAGAAGCATAATTGTCTTGCAGCTTGTACTGTAGGTATCAAAAAATATAATTTATAAAAAACTAGATGAATTTTTACAAAGAGCAAACAGTGTTATGATGAGAAAGACGTGATATTCTCACTCGAAATGCCTAGGCAACAGGCCAGGACACTGCCCAGGCTTGCTCACCATCTCAATCATGCTTTAAAATTGAAACAAAAAAAGAAGAGAAAAGTTTCTGGTATTAGTATATTACTAACCATCTTTCCAATTAGTGATACTGGTATCTATCTTTTATAGAAGCTTGTAGTCCATCACTGATTGTTGGTAACTTAAATGCAGAGCTTAAAACCAACAGATGGGTTCAAATGCAGTTGATGATTTGATAGAAGCGTCATCAGGAGTTCATTATTCTGGGTTCCATATGGAGCAGCCACGTACTCCAGAAATTGAGCAACCAACAACCTCTATAGATGATAGTTTTCATAAGCAACCCTTCATCATTGGTATGTATACACAGTGGTATCTCTCTTGTTGTCACCTGAGCATTGTTTTTTTCAAATAAGGGTCTTCAGCATTGTCAATTCACTTTTGCAATTGCAGAAATTGAAAAAAAAGGACTACTTATCCCAATATCAATTCAATTGTTGTTCTCCTCAGCAATTCTTGGAATGTTTCTTTGTGATGTTCATTTTTTATGATTCCCAGAGCAAAGGATATGTTTGCTTAAGAAACTGACAATAATTTATTCAAGCTTTTATCACGTGTACATCAATTGATAGTGTTCGCTTCAATATGAATGTTAAAATTTGAAAATATGGTAGAGCTATTCATGGATGCATATAACGTCGGGATGACAAGGGGCTACAATCTTGAGCAGCATTGAAATCTAGTCTGCCTTTTTGCCTGCTTGTAAGTGATTTAGTTGGCTATCTGGTTTGGCTTAGAACTTTGTGGGAATCTTTCTTTGACATTGGATTCGGCTGCCTTTCAGATGAAGTTAACACAAAATTGATTATGCTGGGTATGTGTAAAGAAAATTCTCAATATAGATTTTGCACTCAATCCTTCTATTTGCCTACTGTTAGAACATGTCAATGGAGTTGGTTCAATTGTTTTTGTGTGCACATTGTTGGTCAACCGAGCAGTTTATGATTTTCATTCTCAGGAAGTGTGTCAGGAATATGGGTGGTGATGAAAATTGATTATCTGGATTTTCAGTTGAATCATAAAACTTCAAGCAATTTTTCAACTTAATCTTTCCATCAGATTCAAGGCTATAAATGCTATTTGTATTTCTTTTGCTTGGTACATATTTTCTTAATCATGCTCATAAAATATGTTTCACCGGCAGGCGTTGCTGGAGGTGCTGCATCTGGCAAGACAACAGTTTGTGATTTAATTATTGAGCAGCTTCGTGATCAGCGAGTTGTACTAGTTAACCAGGTGGGTTTCTTCGGACTGGAAAGAAGTCGTTTCTTTATTTTGATGAACAAGTTTAAGCTTACAGCTAAATCATCCCTAGTATGAACAGATAGTATCATGATCTTCTCCATACAGCTTTTTTAGCTGCCTTCATTCTCTTATCTCTTCCTATTGAGTCTATAACTATTTATAATGTGTTTATAGCTCCTCTTTTCTTGTTTCTTCTTGATATGATGATTGGTTAGCTAGGTCTTCTATATCTCAATTTTCTCTAGGTGTTTTTTTCTGCATATTCCCCCTTCAATTTTTGATAATTTTAAAGTAATAAACCAAACTTATATTTCATCTATCTTTAAGATCAATAAGAACTTTTTGGTTGAATTACTGATTTTATCGGTCTTCATGTGAGATGTTTTCCCAACAGAAGTTGTGGGAAAAAATACGGCTTAAGAGGATTTAGAATGATATTTCTATTTAACAAGTCGTAAATGCTAGATTTCTATATTTTAGTTTGCACAAATTCATTCTCTGATTTATCTAACCCAATTTTGAATTTGCAGGATTCTTTTTATCATACTTTGACTCCTGAAGAACTGACAAAAGTTCATGAGTACAACTTTGACCATCCTGGTTAGTCTAGTCCATTTTATTTGAGTTAAATTCAGTCTCAATTGTTTATGGTTTAATTTCCCAGATAGAAAATGACACTTGGTATTACTTTTAGGAAAAAGCATCTCTATAGTCTATATGTGTCATTTTTTTTCTTCTCAAAATCGTTCTTGCATTTGTCTATAAAAATATTTATGAATTGAAATTGGACTCTCTTGAACAGGATTAGTTCTGACCTCGAAGAAGTATGTTTATGTGTTCAAGACCTGTGGCTTGGAACTGTCCTCAATTTTATTGGAAATCCTTCTTAATTAATGATGATAATTTCTGGTGATTGAGTTTTGATTTATAGTGTTCATACATGTGTAAACTATTTGAAATTGTTTAATATTTATGTATCATTTGTTTGAATTATTAAGTATCAGATACATGTTATAAGATACTGTTTGCTGTAAGTTTCATGATTCTCTTTCTTATTGTTCAGATGCATTTGACACCGAAAAATTGTTGCGTGTGGTGGAGGAATTGAAGCAGGGGCAAGCAGTAGATATTCCAAAATATGATTTTAAGAGTTACAAAAATGACGTATTCCCTCTTCGAAGGGTAAATCTTCATAGCATGATTTTATTTTGTTTCATTTTATTGCATACGTCATCCAACTTTCTAAAGAATACATCAATTTCTGTTTATCTTAGTCAACATTTAAACTCCCTCATCTTTTTGCACTATTTCTTTCTTCCAATTTAATACCTTATCTAAAAATATTTAAAAGGAAGAAAGAGGGATTGGATTCCTATGACACAGAAAACACATACGTCTCTAGATAGACAGCTGGATATATAGGTAGAGACACACAATTGCCTGCATTTCGAGTTGTAGCTGTCTTTTTTCAGAATTCTCCATTAGTGCCAATTCACCTTCTTTATTTTACTTGGTAGGTCAATCCTTCAGATGTTATAATCTTGGAAGGCATACTCATCTTTCACGATCCACGTGTCCGAGATCTGATGAATATGAAGATATTTGTTGATACAGGTTCTTTCATCTCCTTTCTTTTGATGTTCCTTTATTATTGTTGTGGCATGAGTTGTTCCCTCTCATTGACATGTTACCATGATGTACTAGAGAAAAAATTAGCATAATGTCCTAGTAGTCATCTCATATAGTATTCTTTTACTTGGATGTTCTGCTTTAGTTCTTGACATACGAGCATGTTGTATCCCTCCATATCTACTGGACAGTGCTTTATGTTGGGTCTTCTACTTGTGTGGTTTCATCATCTTAAATTTTCAGTGCAGATGCTGATGTACGTCTTGCGAGGAGAATAAGACGTGACACAGCTGAAAAGGGAAGAGATATTAGTATGGTGCTTGATCAGGTTAGGAAAACTTTCAGGCTTATTTGAAAAAAGTGGGGATCTTTCACTCAAATTTGACAGATATTTGATAAAGCATTTCTTGAGTTTCTTACTCTTCCAACATATTACATTTTGTTTATAACGAAGACCAGTGACTTGATGACTACGAACCTAATGGAAATTTGGGCTTATAAGGCCAAATGTCATAAGTTAGGATTTCTAACTTCTGACTTTTGGCTTATCTTTGTTCTTTTAGCTTGAAAACAAGTGCTTAAAATCACTTATTTTCTTTTACCGAAAATGCTTAAAAACACCTAAATAAGCCAATCAAAATAGGCTCTAAGTTCCTTCCTCAGTTCATTTCTGTGAAACTTCCATTATGAGTTTCTAAAATTGCCTTTTTTCTAATAAGCTCAATAAAAACCATTTCTTCTTTAACTGATGATTCAACTTCCATCCATCTATTAAGTTTCTAATTGCATTTTTGAAGTTGATTGTCATCGGATTAGCATGATTTTTATGCCTAGGTGTTTGGTTTTCACTAATAATTTGAGTTAAATCTTTGATGCAGTACTCTAAGTTTGTGAAAGCTGCTTTTGATGACTTCATTCTTCCTACAAAGAAGTATGCTGATGTTATCATTCCCCGAGGTGGAGACAATCATGTTGCTATCGATTTGATTGTGCAACACATTCGGACAAAACTTGGTCAACATGATCTTT</genome_strand>
        <mrna_strand>TCATAAATACACACTACTGTTCATTGTATCTTTCTTTCTTCTTCTCCGACTAATTTCAAATCTCAAATAAATCTTCCCCAAATTTAGAAAGAACAAACAAGCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTAAAACCAACAGATGGGTTCAAATGCAGTTGATGATTTGATAGAAGCGTCATCAGGAGTTCATTATTCTGGGTTCCATATGGAGCAGCCACGTACTCCAGAAATTGAGCAACCAACAACCTCTATAGATGATAGTTTTCATAAGCAACCCTTCATCATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGCTGGAGGTGCTGCATCTGGCAAGACAACAGTTTGTGATTTAATTATTGAGCAGCTTCGTGATCAGCGAGTTGTACTAGTTAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTTTTTATCATACTTTGACTCCTGAAGAACTGACAAAAGTTCATGAGTACAACTTTGACCATCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATTTGACACCGAAAAATTGTTGCGTGTGGTGGAGGAATTGAAGCAGGGGCAAGCAGTAGATATTCCAAAATATGATTTTAAGAGTTACAAAAATGACGTATTCCCTCTTCGAAGG...............................................................................................................................................................................................................................................................................................................................................GTCAATCCTTCAGATGTTATAATCTTGGAAGGCATACTCATCTTTCACGATCCACGTGTCCGAGATCTGATGAATATGAAGATATTTGTTGATACAG.......................................................................................................................................................................................................................................................................ATGCTGATGTACGTCTTGCGAGGAGAATAAGACGTGACACAGCTGAAAAGGGAAGAGATATTAGTATGGTGCTTGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTAAGTTTGTGAAAGCTGCTTTTGATGACTTCATTCTTCCTACAAAGAAGTATGCTGATGTTATCATTCCCCGAGGTGGAGACAATCATGTTGCTATCGATTGGATTGTGCAACACATTCGGACAAAACTTGGTCAACATGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315574" ref_strand="+" ref_description="SGN-U315574        Tomato 200607 #1 [39 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:At4g26520.1); similar to fructose-bisphosphate aldolase [Glycine max] (GB:AAR86689.1); similar to fructose 1,6, bisphosphate aldolase [Salicornia herbacea] (GB:AAR84667.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741) | chr4:13391351-13393126 FORWARD | Aliases: None(evalue: 6e-173, score=603) genbank/nr: gi|40457267|gb|AAR86689.1| fructose-bisphosphate aldolase [Glycine max](evalue: 5e-175, score=617)">
      <seq>gttggctgcttccttagctttatccttttagcacaaccatgtctgcctttgtgggaaaatatgccgaggaacttatcaagaatgccaagtacatagcaacgccagggaaaggtattttggcagcagatgaaagcactggcactattggaaaacgtttatcaagcattaatgttgaaaacattgaaccaaatcgtcaagcacttcgtgaactccttttcacttcaccaaatgctcttccttacctctctggtgttattctctttgaagaaacactttaccaaagcacttctgatggaaagccgtttgttgaacttcttcaagagaaccatgttgttcctgggattaaggttgacaagggtaccgtggatttggctgggaccaatggtgagaccacaactcaaggtttcgactcgttgggtgcacgttgtgcacagtactacaaagcaggtgctcgttttgccaaatggagagctgtgttgaaaattggggctactgagccttcagaattgtccattcagcaaaatgctcaggggctagctcgttacgcgataatttgccaagaaaacggacttgtgccaattgtggagccagaaattctgacagatggaaatcatgatatcaagaaatgtgcagcagccactgaaactgttcttgctgctgtttataaggcactcaatgaccagcatgttcttcttgaaggaacacttttgaagcctaacatggtcacccctggctctgatagccccaaggttgcagcagaagtaatagcagagtacacggtcacagccctgcgccggaccgtgccaccagcagtgccagggatagtgttcttatcaggaggacagagtgaggaagaggcaacagtgaacttaaatgcaatgaacaaattggaagtgcttaagccatggacactgtcattttcatttggaagagctcttcagcaaagtaccctcaagacttggggtggaaaaaaagaaaatgttggcaaagctcaagaggcatttttgacaaggtgcaaggctaattcagatgcaacacttggaaagtatacaggtggaagtggaagtggtgctgcttctgagagtctgtttgttaaaggttacaaatattagagggggaaaaaagttggagttgatgataacaggttatatactattgtctttggtattgattttaataacatgttttatgttaaaaatttagtctttttaatttcaaaaatctttccattaagtaactcttgtaaattactgttcaaagtttatattcacttaaccaagaaaaaaaagaaaaaaaaactatatatataaaaaacaataaactttgatgagtgaaaaaaaaaaaaaaaaaaaaaacgcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="+" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="89863" stop="93198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90163" g_stop="90228" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90229" i_stop="90770" i_length="542">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90771" g_stop="91151" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="447" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91152" i_stop="91384" i_length="233">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91385" g_stop="91686" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="749" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91687" i_stop="92309" i_length="623">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92310" g_stop="92897" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="1337" r_length="588" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1338" polyA_stop="1356"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="+" ref_id="SGN-U315574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1337</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90163" e_stop="90228"/>
          <exon e_start="90771" e_stop="91151"/>
          <exon e_start="91385" e_stop="91686"/>
          <exon e_start="92310" e_stop="92897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTGCTTCCTTAGCTTTATCCTTTTAGCACAACCATGTCTGCCTTTGTGGGAAAATATGCCGGTAAACTTCTCTTCAAAATTTAAACTTTATGAATTCATAATTAATATAATATTTACGATAAAATATTTATTCATATTAAGTGAATTTTTTTACTTATATATACATATATAGGTCGGTAATTTCTTTTTATTAAATTTATGTGAATTCATATATATATATATATATTTGTGGTTTTCGTAAATCCTATATAAAAAACGAGTTGGTCTTGGTAAATAAATACGTACATATTTTGCTAGCCAGCATGCAAGGGCAGTAACGGTCCTTTAAGGTACGTGAGAATGTATATTTTACATAGTACGTGGTACATATATTGTCATGCATGTATATAAAGCCAACCTATTATGTAAAGTATATATCTTGATTTCAATTTTTACACATGTAGCATAAATACTAGATGCAATAGCCTTGTTCTTTTTAGGGTAACTAACAAATTAAATTGCGTTTACTTGTAATTAGACAGATAATATATATACGTGGGGTCGATGGCAAGATGTACACGTACCTTAAAGTATAATTCAACTCTTATCATGCTATAAATGCAGAGGAACTTATCAAGAATGCCAAGTACATAGCAACGCCAGGGAAAGGTATTTTGGCAGCAGATGAAAGCACTGGCACTATTGGAAAACGTTTATCAAGCATTAATGTTGAAAACATTGAACCAAATCGTCAAGCACTTCGTGAACTCCTTTTCACTTCACCAAATGCTCTTCCTTACCTCTCTGGTGTTATTCTCTTTGAAGAAACACTTTACCAAAGCACTTCTGATGGAAAGCCGTTTGTTGAACTTCTTCAAGAGAACCATGTTGTTCCTGGGATTAAGGTTGACAAGGGTACCGTGGATTTGGCTGGGACCAATGGTGAGACCACAACTCAAGGTTTCGACTCGTTGGGTGCACGTTGTGCACAGTACTACAAAGCAGGTACGTGTGTGTTTGAACTCATTTTGATTTGATTTATGTGATTAATTACTTTGTTATGCTATATTTCAACACGCACTCTCACGTGCATCATGTGAAATGCATCTTTACAGAAATAAATATGTTATGTATCCAGAGGCTATTTAGATTAATTTATTCTTCTGATTTTTTTAAAATCATAAGCTGTTAGAGGGAGAACAAGGTTTAATTATTTAACTACATTGTGTCTTGAGAAGGTGCTCGTTTTGCCAAATGGAGAGCTGTGTTGAAAATTGGGGCTACTGAGCCTTCAGAATTGTCCATTCAGCAAAATGCTCAGGGGCTAGCTCGTTACGCGATAATTTGCCAAGAAAACGGACTTGTGCCAATTGTGGAGCCAGAAATTCTGACAGATGGAAATCATGATATCAAGAAATGTGCAGCAGCCACTGAAACTGTTCTTGCTGCTGTTTATAAGGCACTCAATGACCAGCATGTTCTTCTTGAAGGAACACTTTTGAAGCCTAACATGGTCACCCCTGGCTCTGATAGCCCCAAGGTTAGTAATTTATTAAGAATTAAAGTTATATACATGGAGATCGTACAAGATTTTTATACAGTTACTGTATTGTAGCCTATGTTACGTTGCATGGATTCTTCAAAATGTTGTTGCACCACGCACTACTTCTAGAGGATCTGATGCCACTGACAACATTTTTGAAGAGTATGAGCAACATAGGTTGTTATAGTTAAATTGGATGAAAATGTAACTCGTCTAATCGGTTCTAGTTGGAATGTGTATATTCATGTGTAGGTTATATAGTTCAAATTATCATATCTTAAAGTTAGGACCAATTTGAGGGGCCTATTTATGGAGCTAATTGTATTATCCATTAGGAAACTTATCAAAAAGTGAGAAAAAGGATACTATAATTTTATTTGAGATCTGTTTGTTGTCAACTAGGCATGATAAATAAAAGAAAATGATTTCGTAAGTTTGATTTGATAAAAAGAAGGGACAATCCAGTGCACAAAGCATCCCATGTTCACACATGGTCCTATGAAGGGCCGCACCTCAAGGGAGTGTAATGTCAGCAACATAGACATGATCCATTATTGATATTGACGCGATGATTTAGTCCAATCTGCACATTTGACACCCGTTCTCATTCGTTATCTTAGGTTGCAGCAGAAGTAATAGCAGAGTACACGGTCACAGCCCTGCGCCGGACCGTGCCACCAGCAGTGCCAGGGATAGTGTTCTTATCAGGAGGACAGAGTGAGGAAGAGGCAACAGTGAACTTAAATGCAATGAACAAATTGGAAGTGCTTAAGCCATGGACACTGTCATTTTCATTTGGAAGAGCTCTTCAGCAAAGTACCCTCAAGACTTGGGGTGGAAAAAAAGAAAATGTTGGCAAAGCTCAAGAGGCATTTTTGACAAGGTGCAAGGCTAATTCAGATGCAACACTTGGAAAGTATACAGGTGGAAGTGGAAGTGGTGCTGCTTCTGAGAGTCTGTTTGTTAAAGGTTACAAATATTAGAGGGGGAAAAAAGTTGGAGTTGATGATAACAGGTTATATACTATTGTCTTTGGTATTGATTTTAATAACATGTTTTATGTTAAAAATTTAGTCTTTTTAATTTCAAAAATCTTTCCATTAAGTAACTCTTGTAAATTACTGTTCAAAGTTTATATTCACTTAACCAAGAAAATAAAGAAAAAAAATCTATATATATAAAAAACAATAAACTTTGATGAGTGAAAG</genome_strand>
        <mrna_strand>GTTGGCTGCTTCCTTAGCTTTATCCTTTTAGCACAACCATGTCTGCCTTTGTGGGAAAATATGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACTTATCAAGAATGCCAAGTACATAGCAACGCCAGGGAAAGGTATTTTGGCAGCAGATGAAAGCACTGGCACTATTGGAAAACGTTTATCAAGCATTAATGTTGAAAACATTGAACCAAATCGTCAAGCACTTCGTGAACTCCTTTTCACTTCACCAAATGCTCTTCCTTACCTCTCTGGTGTTATTCTCTTTGAAGAAACACTTTACCAAAGCACTTCTGATGGAAAGCCGTTTGTTGAACTTCTTCAAGAGAACCATGTTGTTCCTGGGATTAAGGTTGACAAGGGTACCGTGGATTTGGCTGGGACCAATGGTGAGACCACAACTCAAGGTTTCGACTCGTTGGGTGCACGTTGTGCACAGTACTACAAAGCAG.........................................................................................................................................................................................................................................GTGCTCGTTTTGCCAAATGGAGAGCTGTGTTGAAAATTGGGGCTACTGAGCCTTCAGAATTGTCCATTCAGCAAAATGCTCAGGGGCTAGCTCGTTACGCGATAATTTGCCAAGAAAACGGACTTGTGCCAATTGTGGAGCCAGAAATTCTGACAGATGGAAATCATGATATCAAGAAATGTGCAGCAGCCACTGAAACTGTTCTTGCTGCTGTTTATAAGGCACTCAATGACCAGCATGTTCTTCTTGAAGGAACACTTTTGAAGCCTAACATGGTCACCCCTGGCTCTGATAGCCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCAGAAGTAATAGCAGAGTACACGGTCACAGCCCTGCGCCGGACCGTGCCACCAGCAGTGCCAGGGATAGTGTTCTTATCAGGAGGACAGAGTGAGGAAGAGGCAACAGTGAACTTAAATGCAATGAACAAATTGGAAGTGCTTAAGCCATGGACACTGTCATTTTCATTTGGAAGAGCTCTTCAGCAAAGTACCCTCAAGACTTGGGGTGGAAAAAAAGAAAATGTTGGCAAAGCTCAAGAGGCATTTTTGACAAGGTGCAAGGCTAATTCAGATGCAACACTTGGAAAGTATACAGGTGGAAGTGGAAGTGGTGCTGCTTCTGAGAGTCTGTTTGTTAAAGGTTACAAATATTAGAGGGGGAAAAAAGTTGGAGTTGATGATAACAGGTTATATACTATTGTCTTTGGTATTGATTTTAATAACATGTTTTATGTTAAAAATTTAGTCTTTTTAATTTCAAAAATCTTTCCATTAAGTAACTCTTGTAAATTACTGTTCAAAGTTTATATTCACTTAACCAAGAAAAAAAAGAAAAAAAAACTATATATATAAAAAACAATAAACTTTGATGAGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339744" ref_strand="-" ref_description="SGN-U339744        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="94907" stop="93824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94616" g_stop="94125" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U339744" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339744" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94616" e_stop="94125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGACG-TACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTGTTCCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGAAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTGGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGCGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTGGCCTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCATTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGA-AA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTT-CAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTCTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCT----TGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-lJEm79/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339745" ref_strand="-" ref_description="SGN-U339745        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aactcaaatgttactttaactgtaaatgttatttgtagttttgatgatttgacaaacaatgggacctcataaaggtatcaggttctctaattgtgtattgcaggtgtcttgtttgaggtattgcagaagaaacaaaaccagggacctagtagaggtaccaggctctcatgaaaatgagtcagtcgactgccagctggagatggtacagaaagtaggtgcacacttcccgatggcgtcagaaaagtgtgaccttttcagcaaatggcaaaggagtttaggaaagtgacttgcccacataaaaggcactttccaaaacatttgttttttagtttttgcaacttgataaaaacttttcaagaacacttgcaaaggctacacaaaaggtagaatcattccaagaacaacagcaacatcttgagcttgtcgtatagttgtttaggaatttattctcttgttgttaaattgtaaaccactgctaaatctataaaggaattggtgtgttgtgtaaaagtctaggttgtccaagtgggatagcttagtgggtagattgtttttctacttaggcttgttgagcaatagaggactattgtttaacggtaagattgataactctttcttacgtttggtgaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0119A22-Dvktt/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0119A22.1" temp_strand="-" temp_description="C07SLm0119A22.1  AC210371.2 htgs_phase:3 submitted_to_sgn_as:C07SLm0119A22 upload_account_name:france">
        <position start="95106" stop="93870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94782" g_stop="94174" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="627" r_length="601" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="648"/>
      <MATCH_line gen_id="C07SLm0119A22.1" gen_strand="-" ref_id="SGN-U339745" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0119A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339745" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94782" e_stop="94174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATTTGTAGTTTTGATGATTTGACAAACTTACGGACCTCATAAAGGTACCGGGTTTTCTACTTGAGTATTGCGGGTGTCTTCTTTGAAGTATTGCAGATGAAACAAACCCAGGGACCTAGTAGAGATACCAGGCCCTCATGATGATGAGCCAGTCAACTGCCAGCTGGAGA-CGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTGTTCCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGAAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTGGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGCGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTGGCCTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT</genome_strand>
        <mrna_strand>TGTTATTTGTAGTTTTGATGATTTGACAAACAATGGGACCTCATAAAGGTATCAGGTTCTCTAATTGTGTATTGCAGGTGTCTTGTTTGAGGTATTGCAGAAGAAACAAAACCAGGGACCTAGTAGAGGTACCAGGCTCTCATGAAAATGAGTCAGTCGACTGCCAGCTGGAGATGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTTCAGCAAATGGCAAAGGAGTTTAGGAAAGTGACTTGCCCACATAAAAGGCACTTTCCAAAACATTTGTTTTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACACTTGCAAAGGCTACAC----AAAAGGTAGAATCATTCCAAGAACAACAGCAACATCTTGAGCTTGTCGTATAGTTGTTTAGGAATTTATTCTCTTGTTGTTAAATTGTAAACCACTGCTAAATCTATAAAGGAATTGGTGTGTTGTG-TAAAAGTCTAGGTTGTCCAAGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCT----TGTTGAGCAATAGAGGACTATTGTTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5952" PGL_stop="4788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5952" e_stop="5898"/>
            <exon e_start="5670" e_stop="5447"/>
            <exon e_start="5344" e_stop="5198"/>
            <exon e_start="4959" e_stop="4788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5952" e_stop="5898" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.686">
            <gDNA_intron_boundary i_start="5897" i_stop="5671" i_length="227"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5670" e_stop="5447" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="5446" i_stop="5345" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5344" e_stop="5198" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.904">
            <gDNA_intron_boundary i_start="5197" i_stop="4960" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4959" e_stop="4788" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5952" stop="5898"/>
              <exon start="5670" stop="5447"/>
              <exon start="5344" stop="5198"/>
              <exon start="4959" stop="4788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAG : ACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTG : CATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAG : AGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</gDNA_template>
            <first_frame> F  *  V  W  T  R  T  T  I  N  F  T  M  *  A  F  A  S   : D  E  L  Q  D  G  N  F  T  R  S  K  G  N  A  C  G  E  F  S  L  K  L  C  S  I  T  R  T  A  R  K  T  *  F  I  E  S  S  S  *  N  G  F  *  S  Q  T  S  Q  *  L  L  C  E  S  A  K  R  S  G  G  S  E  K  G  Q  N  C  *  N  G  K  S  L  :  H  *  *  K  Q  G  P  *  A  K  E  G  F  S  *  G  K  V  K  S  N  K  S  R  D  L  *  K  I  *  K  G  G  R  D  *  V  E  V  G  E  Y  I  S  R  K  Q  K  K  :  R  G  R  T  H  C  T  L  S  Q  G  *  E  A  A  Q  I  T  T  *  K  N  L  H  S  A  C  *  R  D  H  Q  K  Q  P  E  A  G  C  G  H  R  K  N  I  K  R  N  K  G  A  S  V  R  E  Q  L  </first_frame>
            <second_frame>  F  E  Y  G  Q  G  Q  Q  S  T  S  P  C  E  H  L  P  Q  :  T  N  C  K  T  E  T  L  R  D  Q  K  E  M  L  V  E  N  S  V  S  S  S  V  Q  L  Q  E  L  Q  E  K  L  D  L  L  K  A  A  V  E  M  A  S  D  H  K  H  P  S  D  F  Y  V  N  Q  L  N  D  Q  V  E  V  K  R  G  K  I  V  E  M  E  S  H  C :   I  D  R  S  K  A  L  E  Q  K  K  V  S  L  E  E  K  L  R  A  T  N  P  E  T  Y  E  K  Y  K  K  V  E  E  I  E  L  K  L  E  N  I  L  A  E  N  K  R  R :   E  E  E  L  I  V  L  S  A  K  A  E  K  Q  P  K  L  Q  P  R  R  T  Y  I  Q  R  V  E  E  I  T  K  N  S  R  K  Q  D  V  D  I  E  R  I  L  K  E  T  R  E  L  Q  L  E  S  N  F </second_frame>
            <third_frame>   L  S  M  D  K  D  N  N  Q  L  H  H  V  S  I  C  L  R :   R  T  A  R  R  K  L  Y  E  I  K  R  K  C  L  W  R  I  Q  S  Q  A  L  F  N  Y  K  N  C  K  K  N  L  I  Y  *  K  Q  Q  L  K  W  L  L  I  T  N  I  P  V  T  F  M  *  I  S  *  T  I  R  W  K  *  K  G  A  K  L  L  K  W  K  V  T   : A  L  I  E  A  R  P  L  S  K  R  R  F  L  L  R  K  S  *  E  Q  Q  I  Q  R  P  M  K  N  I  K  R  W  K  R  L  S  *  S  W  R  I  Y  *  P  K  T  K  E   : E  R  K  N  S  L  Y  S  Q  P  R  L  R  S  S  P  N  Y  N  L  E  E  P  T  F  S  V  L  K  R  S  P  K  T  A  G  S  R  M  W  T  *  K  E  Y  *  K  K  Q  G  S  F  S  *  R  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5951" stop="5898"/>
                    <exon start="5670" stop="5447"/>
                    <exon start="5344" stop="5198"/>
                    <exon start="4959" stop="4788"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEYGQGQQSTSPCEHLPQTNCKTETLRDQKEMLVENSVSSSVQLQELQEKLDLLKAAVEMASDHKHPSDFYVNQLNDQVEVKRGKIVEMESHCIDRSKALEQKKVSLEEKLRATNPETYEKYKKVEEIELKLENILAENKRREEELIVLSAKAEKQPKLQPRRTYIQRVEEITKNSRKQDVDIERILKETRELQLESNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7732" PGL_stop="8632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7732" e_stop="7930"/>
            <exon e_start="8000" e_stop="8283"/>
            <exon e_start="8418" e_stop="8632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7732" e_stop="7930" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7931" i_stop="7999" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8000" e_stop="8283" e_length="284"/>
          </exon>
          <intron i_serial="2" don_prob="0.636" acc_prob="0.974">
            <gDNA_intron_boundary i_start="8284" i_stop="8417" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="8418" e_stop="8632" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7732" stop="7930"/>
              <exon start="8000" stop="8283"/>
              <exon start="8418" stop="8632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGATGAAATCGAGGACTTGTCGTTGTCCCTTCCAACTGTTGGCTCAATGCAGATTGCTGGAAGTAACGGTTTTGGACATAACATAGAGTTCATGTCTCAAGCTTATCTTAGAAACAGAAGCTCTGAAATTGATATAGAAGTTGAACATGATACGTCTATCGCTCATATAGATCAACCTCTTCCCATATTCCTCAAG : TTTGCAAATGTGGAGTATAAGGTGAAGACTAATCAAGCTTTCTCCAACAATCCTGTCAAGGCAGTTGTCTCAAAGGTAGCTTCTCAGTTTGAAAATGATAATTACAAACATATACTCAAAGGTATAACGGGAAGCATTAGTCCCGGTGAAATTCTTGCCTTAATGGGACCTTCGGGCAGTGGAAAAACGACTTTGTTAAAGATACTGGGTGGAAGATTGCACGAAAATGTCAAAGGAACCGTCACTTACAATGACATTCCATATAGTCCAGCTCTGAAAAGAAG : GGTGGGTTTCGTGACACAAGATGATGTGCTTTTCCCACAATTGACGGTTGAGGAAACTTTAGTTTTTGCTGCATTCTTAAGACTTCCATGCAAGATGAGTCGACGTCAGAAGTATGAAAGAGTAGAAGTGATTATTAAGGAATTAGGCCTTGAAAGGTACTTTGTTATCCTTTCATGTACTTGAGTACTCACTAATAGCAACTACCGTTGCAACT</gDNA_template>
            <first_frame> T  R  *  N  R  G  L  V  V  V  P  S  N  C  W  L  N  A  D  C  W  K  *  R  F  W  T  *  H  R  V  H  V  S  S  L  S  *  K  Q  K  L  *  N  *  Y  R  S  *  T  *  Y  V  Y  R  S  Y  R  S  T  S  S  H  I  P  Q   : V  C  K  C  G  V  *  G  E  D  *  S  S  F  L  Q  Q  S  C  Q  G  S  C  L  K  G  S  F  S  V  *  K  *  *  L  Q  T  Y  T  Q  R  Y  N  G  K  H  *  S  R  *  N  S  C  L  N  G  T  F  G  Q  W  K  N  D  F  V  K  D  T  G  W  K  I  A  R  K  C  Q  R  N  R  H  L  Q  *  H  S  I  *  S  S  S  E  K  K  :  G  G  F  R  D  T  R  *  C  A  F  P  T  I  D  G  *  G  N  F  S  F  C  C  I  L  K  T  S  M  Q  D  E  S  T  S  E  V  *  K  S  R  S  D  Y  *  G  I  R  P  *  K  V  L  C  Y  P  F  M  Y  L  S  T  H  *  *  Q  L  P  L  Q   </first_frame>
            <second_frame>  Q  D  E  I  E  D  L  S  L  S  L  P  T  V  G  S  M  Q  I  A  G  S  N  G  F  G  H  N  I  E  F  M  S  Q  A  Y  L  R  N  R  S  S  E  I  D  I  E  V  E  H  D  T  S  I  A  H  I  D  Q  P  L  P  I  F  L  K  :  F  A  N  V  E  Y  K  V  K  T  N  Q  A  F  S  N  N  P  V  K  A  V  V  S  K  V  A  S  Q  F  E  N  D  N  Y  K  H  I  L  K  G  I  T  G  S  I  S  P  G  E  I  L  A  L  M  G  P  S  G  S  G  K  T  T  L  L  K  I  L  G  G  R  L  H  E  N  V  K  G  T  V  T  Y  N  D  I  P  Y  S  P  A  L  K  R  R :   V  G  F  V  T  Q  D  D  V  L  F  P  Q  L  T  V  E  E  T  L  V  F  A  A  F  L  R  L  P  C  K  M  S  R  R  Q  K  Y  E  R  V  E  V  I  I  K  E  L  G  L  E  R  Y  F  V  I  L  S  C  T  *  V  L  T  N  S  N  Y  R  C  N  </second_frame>
            <third_frame>   K  M  K  S  R  T  C  R  C  P  F  Q  L  L  A  Q  C  R  L  L  E  V  T  V  L  D  I  T  *  S  S  C  L  K  L  I  L  E  T  E  A  L  K  L  I  *  K  L  N  M  I  R  L  S  L  I  *  I  N  L  F  P  Y  S  S  S :   L  Q  M  W  S  I  R  *  R  L  I  K  L  S  P  T  I  L  S  R  Q  L  S  Q  R  *  L  L  S  L  K  M  I  I  T  N  I  Y  S  K  V  *  R  E  A  L  V  P  V  K  F  L  P  *  W  D  L  R  A  V  E  K  R  L  C  *  R  Y  W  V  E  D  C  T  K  M  S  K  E  P  S  L  T  M  T  F  H  I  V  Q  L  *  K  E   : G  W  V  S  *  H  K  M  M  C  F  S  H  N  *  R  L  R  K  L  *  F  L  L  H  S  *  D  F  H  A  R  *  V  D  V  R  S  M  K  E  *  K  *  L  L  R  N  *  A  L  K  G  T  L  L  S  F  H  V  L  E  Y  S  L  I  A  T  T  V  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7733" stop="7930"/>
                    <exon start="8000" stop="8283"/>
                    <exon start="8418" stop="8601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDEIEDLSLSLPTVGSMQIAGSNGFGHNIEFMSQAYLRNRSSEIDIEVEHDTSIAHIDQPLPIFLKFANVEYKVKTNQAFSNNPVKAVVSKVASQFENDNYKHILKGITGSISPGEILALMGPSGSGKTTLLKILGGRLHENVKGTVTYNDIPYSPALKRRVGFVTQDDVLFPQLTVEETLVFAAFLRLPCKMSRRQKYERVEVIIKELGLERYFVILSCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12729" PGL_stop="13166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12729" e_stop="13166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="12729" e_stop="13166" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12729" stop="13166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAAATACACTCAACCCTGCAAATTCCCTTTAAAAAATCTTACTGTAAAACTTAAAGTCACCATTAATGGTGAATCAAGAAAGTCAATCTTAAGAATTTTCCCATTTTTGAACAACCATAGTCATAAAGATTGAGTCTTTTGAGTTTTCTGAGGAAAAAAAAGCTATCTTTATCAGAAATTAATGGAGCTGGTGCCTTATTCAGACCCAAAAGCTGAATCAAGTGTTGTTAATCCACCTTGGGAAGATATGTTTAGATCAGCTTCAATGAGGAAACCAGAAGAACCAAAGCCCCAGAACCAGGTCCCTTCAGAGGCTCAGCCAAGAAAAGAAAATGAACCAAATCAAGATTCAGTGTCTGCTGACCCTCAGGTGAGACTAGCCCTTTATATAGCTATGGCTCATGCTGGACTTGTATTTACATTTTTCATTATTTA</gDNA_template>
            <first_frame> P  K  I  H  S  T  L  Q  I  P  F  K  K  S  Y  C  K  T  *  S  H  H  *  W  *  I  K  K  V  N  L  K  N  F  P  I  F  E  Q  P  *  S  *  R  L  S  L  L  S  F  L  R  K  K  K  L  S  L  S  E  I  N  G  A  G  A  L  F  R  P  K  S  *  I  K  C  C  *  S  T  L  G  R  Y  V  *  I  S  F  N  E  E  T  R  R  T  K  A  P  E  P  G  P  F  R  G  S  A  K  K  R  K  *  T  K  S  R  F  S  V  C  *  P  S  G  E  T  S  P  L  Y  S  Y  G  S  C  W  T  C  I  Y  I  F  H  Y  L </first_frame>
            <second_frame>  Q  K  Y  T  Q  P  C  K  F  P  L  K  N  L  T  V  K  L  K  V  T  I  N  G  E  S  R  K  S  I  L  R  I  F  P  F  L  N  N  H  S  H  K  D  *  V  F  *  V  F  *  G  K  K  S  Y  L  Y  Q  K  L  M  E  L  V  P  Y  S  D  P  K  A  E  S  S  V  V  N  P  P  W  E  D  M  F  R  S  A  S  M  R  K  P  E  E  P  K  P  Q  N  Q  V  P  S  E  A  Q  P  R  K  E  N  E  P  N  Q  D  S  V  S  A  D  P  Q  V  R  L  A  L  Y  I  A  M  A  H  A  G  L  V  F  T  F  F  I  I   </second_frame>
            <third_frame>   K  N  T  L  N  P  A  N  S  L  *  K  I  L  L  *  N  L  K  S  P  L  M  V  N  Q  E  S  Q  S  *  E  F  S  H  F  *  T  T  I  V  I  K  I  E  S  F  E  F  S  E  E  K  K  A  I  F  I  R  N  *  W  S  W  C  L  I  Q  T  Q  K  L  N  Q  V  L  L  I  H  L  G  K  I  C  L  D  Q  L  Q  *  G  N  Q  K  N  Q  S  P  R  T  R  S  L  Q  R  L  S  Q  E  K  K  M  N  Q  I  K  I  Q  C  L  L  T  L  R  *  D  *  P  F  I  *  L  W  L  M  L  D  L  Y  L  H  F  S  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12883" stop="13164"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKSYLYQKLMELVPYSDPKAESSVVNPPWEDMFRSASMRKPEEPKPQNQVPSEAQPRKENEPNQDSVSADPQVRLALYIAMAHAGLVFTFFII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13995" PGL_stop="15550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13995" e_stop="14757"/>
            <exon e_start="15473" e_stop="15550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13995" e_stop="14757" e_length="763"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14758" i_stop="15472" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="15473" e_stop="15550" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13995" stop="14757"/>
              <exon start="15473" stop="15550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCCCTCTCCTTATGCAGAGAAACTCTTAAGCCTGAAAAGGAGGGTTAAAGATCGTGAATGGGCACAAATATATACAGAAGTGGATGTAATGTTCAGGGAACTTCTGATCACTAGAGAGGACTTGGTTGAGAAAGCCAAAGGGTTCGCTCTCCAAGGAGTAAATGTAATGCAACGGATACTGGTTAGTAGCACATCTGTCTTAGGTGGGAGCATGAAGGTCATGTTCTTGATCGGGAATTCCATCGTTTCGGGTGCTGCTGGTCTTTTTAATTTTGTATCTCAGCTAATGGTATTCATTTGGGTACTTTATTATCTCATCACATCGGATTCTGGTGGAGTAACAGAACAAGTCATGTCTATGCTCCCTATGTCACATTCCGCAAGGAGGCGAAGTGTTGAGGTTCTTGACAAAGCTATTTCTGGGGTTCTTCTAGCAACTGCTGAGATTGCACTCTTTCAGGGGTGTCTAACTTGGCTCTTGTTCAGATTATTCTCCATACATTTTTTGTACATGTCAACAATCCTCGCATTTCTTAGTCCTTTGTTTCCTATTTTCCCATCACTGTTTTCAACTATCCCAGCTGCTTTACAGTTGGTGCTTGAAGGTCAATATGTATTGGCCATCAGCTTATCAATTATACATCTCGTACTTATGGACTATGGTACATCCGAAATCATGGAGGATATACCTGGCTATAACGCGTATCTCACTGGTCTCAGCATTATTGGAGGAATGACATTGTTCCCTTCAGCATTTGAG : GGAGCAATAATGGGACCACTGATAACTACTGTTGTGATCGCGATTAAAGATTTGTATGTTGAATTTGTATTGGAAGAA</gDNA_template>
            <first_frame> I  P  L  S  L  C  R  E  T  L  K  P  E  K  E  G  *  R  S  *  M  G  T  N  I  Y  R  S  G  C  N  V  Q  G  T  S  D  H  *  R  G  L  G  *  E  S  Q  R  V  R  S  P  R  S  K  C  N  A  T  D  T  G  *  *  H  I  C  L  R  W  E  H  E  G  H  V  L  D  R  E  F  H  R  F  G  C  C  W  S  F  *  F  C  I  S  A  N  G  I  H  L  G  T  L  L  S  H  H  I  G  F  W  W  S  N  R  T  S  H  V  Y  A  P  Y  V  T  F  R  K  E  A  K  C  *  G  S  *  Q  S  Y  F  W  G  S  S  S  N  C  *  D  C  T  L  S  G  V  S  N  L  A  L  V  Q  I  I  L  H  T  F  F  V  H  V  N  N  P  R  I  S  *  S  F  V  S  Y  F  P  I  T  V  F  N  Y  P  S  C  F  T  V  G  A  *  R  S  I  C  I  G  H  Q  L  I  N  Y  T  S  R  T  Y  G  L  W  Y  I  R  N  H  G  G  Y  T  W  L  *  R  V  S  H  W  S  Q  H  Y  W  R  N  D  I  V  P  F  S  I  *   : G  S  N  N  G  T  T  D  N  Y  C  C  D  R  D  *  R  F  V  C  *  I  C  I  G  R  </first_frame>
            <second_frame>  S  P  S  P  Y  A  E  K  L  L  S  L  K  R  R  V  K  D  R  E  W  A  Q  I  Y  T  E  V  D  V  M  F  R  E  L  L  I  T  R  E  D  L  V  E  K  A  K  G  F  A  L  Q  G  V  N  V  M  Q  R  I  L  V  S  S  T  S  V  L  G  G  S  M  K  V  M  F  L  I  G  N  S  I  V  S  G  A  A  G  L  F  N  F  V  S  Q  L  M  V  F  I  W  V  L  Y  Y  L  I  T  S  D  S  G  G  V  T  E  Q  V  M  S  M  L  P  M  S  H  S  A  R  R  R  S  V  E  V  L  D  K  A  I  S  G  V  L  L  A  T  A  E  I  A  L  F  Q  G  C  L  T  W  L  L  F  R  L  F  S  I  H  F  L  Y  M  S  T  I  L  A  F  L  S  P  L  F  P  I  F  P  S  L  F  S  T  I  P  A  A  L  Q  L  V  L  E  G  Q  Y  V  L  A  I  S  L  S  I  I  H  L  V  L  M  D  Y  G  T  S  E  I  M  E  D  I  P  G  Y  N  A  Y  L  T  G  L  S  I  I  G  G  M  T  L  F  P  S  A  F  E  :  G  A  I  M  G  P  L  I  T  T  V  V  I  A  I  K  D  L  Y  V  E  F  V  L  E  E </second_frame>
            <third_frame>   P  P  L  L  M  Q  R  N  S  *  A  *  K  G  G  L  K  I  V  N  G  H  K  Y  I  Q  K  W  M  *  C  S  G  N  F  *  S  L  E  R  T  W  L  R  K  P  K  G  S  L  S  K  E  *  M  *  C  N  G  Y  W  L  V  A  H  L  S  *  V  G  A  *  R  S  C  S  *  S  G  I  P  S  F  R  V  L  L  V  F  L  I  L  Y  L  S  *  W  Y  S  F  G  Y  F  I  I  S  S  H  R  I  L  V  E  *  Q  N  K  S  C  L  C  S  L  C  H  I  P  Q  G  G  E  V  L  R  F  L  T  K  L  F  L  G  F  F  *  Q  L  L  R  L  H  S  F  R  G  V  *  L  G  S  C  S  D  Y  S  P  Y  I  F  C  T  C  Q  Q  S  S  H  F  L  V  L  C  F  L  F  S  H  H  C  F  Q  L  S  Q  L  L  Y  S  W  C  L  K  V  N  M  Y  W  P  S  A  Y  Q  L  Y  I  S  Y  L  W  T  M  V  H  P  K  S  W  R  I  Y  L  A  I  T  R  I  S  L  V  S  A  L  L  E  E  *  H  C  S  L  Q  H  L  R :   E  Q  *  W  D  H  *  *  L  L  L  *  S  R  L  K  I  C  M  L  N  L  Y  W  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13996" stop="14757"/>
                    <exon start="15473" stop="15550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSPYAEKLLSLKRRVKDREWAQIYTEVDVMFRELLITREDLVEKAKGFALQGVNVMQRILVSSTSVLGGSMKVMFLIGNSIVSGAAGLFNFVSQLMVFIWVLYYLITSDSGGVTEQVMSMLPMSHSARRRSVEVLDKAISGVLLATAEIALFQGCLTWLLFRLFSIHFLYMSTILAFLSPLFPIFPSLFSTIPAALQLVLEGQYVLAISLSIIHLVLMDYGTSEIMEDIPGYNAYLTGLSIIGGMTLFPSAFEGAIMGPLITTVVIAIKDLYVEFVLEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15865" PGL_stop="15526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15865" e_stop="15526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="15865" e_stop="15526" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15865" stop="15526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGAAAATGACATGTCAAAACAATTCTATTTCTCTTCAAAAGATTAAAGGTTTTACAAAGAAGATACAATGCACAATTCTATACTCCAATTTTAATAATTTACCAATTTTCTGCACACTATAAACAGCTTTTTCTGAGAGAAAAAAAAAATCCTCAAACACAGGTAGAATACAAACAATAGTTGACTGGGAGAAAAAAGAATTCACTTTATCTTGCGATGTTTTTCCATCAAAGAAAGTAATAGGGGGTTCTTCTCAATGTCTTCAAAGGTTCAGGCATTGCAAACACAGATTTGTTCTGCTTATTCCTTCTGTTCTTCCAATACAAATTCAACATAC</gDNA_template>
            <first_frame> E  G  K  *  H  V  K  T  I  L  F  L  F  K  R  L  K  V  L  Q  R  R  Y  N  A  Q  F  Y  T  P  I  L  I  I  Y  Q  F  S  A  H  Y  K  Q  L  F  L  R  E  K  K  N  P  Q  T  Q  V  E  Y  K  Q  *  L  T  G  R  K  K  N  S  L  Y  L  A  M  F  F  H  Q  R  K  *  *  G  V  L  L  N  V  F  K  G  S  G  I  A  N  T  D  L  F  C  L  F  L  L  F  F  Q  Y  K  F  N  I  </first_frame>
            <second_frame>  K  E  N  D  M  S  K  Q  F  Y  F  S  S  K  D  *  R  F  Y  K  E  D  T  M  H  N  S  I  L  Q  F  *  *  F  T  N  F  L  H  T  I  N  S  F  F  *  E  K  K  K  I  L  K  H  R  *  N  T  N  N  S  *  L  G  E  K  R  I  H  F  I  L  R  C  F  S  I  K  E  S  N  R  G  F  F  S  M  S  S  K  V  Q  A  L  Q  T  Q  I  C  S  A  Y  S  F  C  S  S  N  T  N  S  T  Y </second_frame>
            <third_frame>   R  K  M  T  C  Q  N  N  S  I  S  L  Q  K  I  K  G  F  T  K  K  I  Q  C  T  I  L  Y  S  N  F  N  N  L  P  I  F  C  T  L  *  T  A  F  S  E  R  K  K  K  S  S  N  T  G  R  I  Q  T  I  V  D  W  E  K  K  E  F  T  L  S  C  D  V  F  P  S  K  K  V  I  G  G  S  S  Q  C  L  Q  R  F  R  H  C  K  H  R  F  V  L  L  I  P  S  V  L  P  I  Q  I  Q  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15740" stop="15528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAFSERKKKSSNTGRIQTIVDWEKKEFTLSCDVFPSKKVIGGSSQCLQRFRHCKHRFVLLIPSVLPIQIQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="19303" PGL_stop="16231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19303" e_stop="19173"/>
            <exon e_start="19007" e_stop="18866"/>
            <exon e_start="17756" e_stop="17653"/>
            <exon e_start="17542" e_stop="17501"/>
            <exon e_start="17414" e_stop="17330"/>
            <exon e_start="17063" e_stop="16964"/>
            <exon e_start="16707" e_stop="16607"/>
            <exon e_start="16512" e_stop="16231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.808" e_score="0.992"/>
          <exon-intron don_prob="0.896" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.498" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="19303" e_stop="19173" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.808">
            <gDNA_intron_boundary i_start="19172" i_stop="19008" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19007" e_stop="18866" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.896" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18865" i_stop="17757" i_length="1109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17756" e_stop="17653" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.498" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17652" i_stop="17543" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17542" e_stop="17501" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.991">
            <gDNA_intron_boundary i_start="17500" i_stop="17415" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17414" e_stop="17330" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17329" i_stop="17064" i_length="266"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17063" e_stop="16964" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="16963" i_stop="16708" i_length="256"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16707" e_stop="16607" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16606" i_stop="16513" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16512" e_stop="16231" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19303" stop="19173"/>
              <exon start="19007" stop="18866"/>
              <exon start="17756" stop="17653"/>
              <exon start="17542" stop="17501"/>
              <exon start="17414" stop="17330"/>
              <exon start="17063" stop="16964"/>
              <exon start="16707" stop="16607"/>
              <exon start="16512" stop="16231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGCACTTATTATTTATCCGGCGGTGCATCGTCCCCAAACAATCCGGTGTGAATTGGGTCAAACCAAAATCCGAATCTCCCAGCTCCATCATCTCTTCGATTCCGCCGGCGATTTCAATCACTCCTTAAG : AATTTTGAAGTATGACAACTGCAGCTAGACCTACATGGGCACCAGCTAAAGGAGGGAATGAACAAGGTGGAACTAGAATTTTTGGTCCATCTCAGAAGTATTCTTCAAGAGATATTGCAGCTCACACTACTTTAAAGCCTAG : AAAGGAGGGACAGGATACTCAGGATGAGTTGCATAGGAGAAATCTCCGGGAAGAGTTGGAGGACCGTGAGCGAAGACATTTTTCTTCAAAAGACAACGGCTACG : AGGACAGAGATCGTAGAAAGAGTGGTCAACTGCTTTTAGATG : GTGCTAAAAGAGTGATTGAAGACCGCATTGTTCCACGCAGCGCTGATGCTGATGATGATGCAGACACCAAAAGTGACGATGAGAG : TGAGGATGATGACGACGATGATGATGAAGATGATACAGAGGCTCTATTGGCAGAGCTTGAACAGATAAAAAAGGAGAAAGCAGAGGAGAAACTTCGAAAA : GAACGACAAGAGCAAGAGGAGGAGCTTAAAGCAAAGGAAGCAGAATTGTTGAAAGGAAACCCTCTTATAAACCAGCCAACGTCTTTCAGTGTTAAGAGAAG : GTGGGATGATGATGTGGTCTTCAAGAATCAGGCTCGCGGAGAACTGAAGGTAGCCAAGCGTTTCATTAATGACACCATCCGGAATGACTTTCACAGGAAGTTTCTCCACAAATACATGAAATGATAATAGGATTTTGATGTGAAAAAAAAGCAATCAACAAACATCAATGCCTTGTGAATTGTTTTTGTTGTAGTTGTTTCTCAACACCCTGTCATATCATTCAAGCATTACTGTAATATTGTCATTCCTAAACTATATATGGAAATACATTTCTGTTCTTT</gDNA_template>
            <first_frame> T  A  L  I  I  Y  P  A  V  H  R  P  Q  T  I  R  C  E  L  G  Q  T  K  I  R  I  S  Q  L  H  H  L  F  D  S  A  G  D  F  N  H  S  L  R :   I  L  K  Y  D  N  C  S  *  T  Y  M  G  T  S  *  R  R  E  *  T  R  W  N  *  N  F  W  S  I  S  E  V  F  F  K  R  Y  C  S  S  H  Y  F  K  A  *  :  K  G  G  T  G  Y  S  G  *  V  A  *  E  K  S  P  G  R  V  G  G  P  *  A  K  T  F  F  F  K  R  Q  R  L  R :   G  Q  R  S  *  K  E  W  S  T  A  F  R  W :   C  *  K  S  D  *  R  P  H  C  S  T  Q  R  *  C  *  *  *  C  R  H  Q  K  *  R  *  E  :  *  G  *  *  R  R  *  *  *  R  *  Y  R  G  S  I  G  R  A  *  T  D  K  K  G  E  S  R  G  E  T  S  K   : R  T  T  R  A  R  G  G  A  *  S  K  G  S  R  I  V  E  R  K  P  S  Y  K  P  A  N  V  F  Q  C  *  E  K  :  V  G  *  *  C  G  L  Q  E  S  G  S  R  R  T  E  G  S  Q  A  F  H  *  *  H  H  P  E  *  L  S  Q  E  V  S  P  Q  I  H  E  M  I  I  G  F  *  C  E  K  K  A  I  N  K  H  Q  C  L  V  N  C  F  C  C  S  C  F  S  T  P  C  H  I  I  Q  A  L  L  *  Y  C  H  S  *  T  I  Y  G  N  T  F  L  F  F </first_frame>
            <second_frame>  R  H  L  L  F  I  R  R  C  I  V  P  K  Q  S  G  V  N  W  V  K  P  K  S  E  S  P  S  S  I  I  S  S  I  P  P  A  I  S  I  T  P  *   : E  F  *  S  M  T  T  A  A  R  P  T  W  A  P  A  K  G  G  N  E  Q  G  G  T  R  I  F  G  P  S  Q  K  Y  S  S  R  D  I  A  A  H  T  T  L  K  P  R :   K  E  G  Q  D  T  Q  D  E  L  H  R  R  N  L  R  E  E  L  E  D  R  E  R  R  H  F  S  S  K  D  N  G  Y   : E  D  R  D  R  R  K  S  G  Q  L  L  L  D   : G  A  K  R  V  I  E  D  R  I  V  P  R  S  A  D  A  D  D  D  A  D  T  K  S  D  D  E  S :   E  D  D  D  D  D  D  D  E  D  D  T  E  A  L  L  A  E  L  E  Q  I  K  K  E  K  A  E  E  K  L  R  K  :  E  R  Q  E  Q  E  E  E  L  K  A  K  E  A  E  L  L  K  G  N  P  L  I  N  Q  P  T  S  F  S  V  K  R  R :   W  D  D  D  V  V  F  K  N  Q  A  R  G  E  L  K  V  A  K  R  F  I  N  D  T  I  R  N  D  F  H  R  K  F  L  H  K  Y  M  K  *  *  *  D  F  D  V  K  K  K  Q  S  T  N  I  N  A  L  *  I  V  F  V  V  V  V  S  Q  H  P  V  I  S  F  K  H  Y  C  N  I  V  I  P  K  L  Y  M  E  I  H  F  C  S   </second_frame>
            <third_frame>   G  T  Y  Y  L  S  G  G  A  S  S  P  N  N  P  V  *  I  G  S  N  Q  N  P  N  L  P  A  P  S  S  L  R  F  R  R  R  F  Q  S  L  L  K  :  N  F  E  V  *  Q  L  Q  L  D  L  H  G  H  Q  L  K  E  G  M  N  K  V  E  L  E  F  L  V  H  L  R  S  I  L  Q  E  I  L  Q  L  T  L  L  *  S  L   : E  R  R  D  R  I  L  R  M  S  C  I  G  E  I  S  G  K  S  W  R  T  V  S  E  D  I  F  L  Q  K  T  T  A  T  :  R  T  E  I  V  E  R  V  V  N  C  F  *  M  :  V  L  K  E  *  L  K  T  A  L  F  H  A  A  L  M  L  M  M  M  Q  T  P  K  V  T  M  R   : V  R  M  M  T  T  M  M  M  K  M  I  Q  R  L  Y  W  Q  S  L  N  R  *  K  R  R  K  Q  R  R  N  F  E  K :   N  D  K  S  K  R  R  S  L  K  Q  R  K  Q  N  C  *  K  E  T  L  L  *  T  S  Q  R  L  S  V  L  R  E   : G  G  M  M  M  W  S  S  R  I  R  L  A  E  N  *  R  *  P  S  V  S  L  M  T  P  S  G  M  T  F  T  G  S  F  S  T  N  T  *  N  D  N  R  I  L  M  *  K  K  S  N  Q  Q  T  S  M  P  C  E  L  F  L  L  *  L  F  L  N  T  L  S  Y  H  S  S  I  T  V  I  L  S  F  L  N  Y  I  W  K  Y  I  S  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18999" stop="18866"/>
                    <exon start="17756" stop="17653"/>
                    <exon start="17542" stop="17501"/>
                    <exon start="17414" stop="17330"/>
                    <exon start="17063" stop="16964"/>
                    <exon start="16707" stop="16607"/>
                    <exon start="16512" stop="16389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIAAHTTLKPRKEGQDTQDELHRRNLREELEDRERRHFSSKDNGYEDRDRRKSGQLLLDGAKRVIEDRIVPRSADADDDADTKSDDESEDDDDDDDEDDTEALLAELEQIKKEKAEEKLRKERQEQEEELKAKEAELLKGNPLINQPTSFSVKRRWDDDVVFKNQARGELKVAKRFINDTIRNDFHRKFLHKYMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="24994" PGL_stop="30342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24994" e_stop="25106"/>
            <exon e_start="26074" e_stop="26155"/>
            <exon e_start="26258" e_stop="26391"/>
            <exon e_start="27046" e_stop="27128"/>
            <exon e_start="27300" e_stop="27359"/>
            <exon e_start="28680" e_stop="28788"/>
            <exon e_start="28874" e_stop="28926"/>
            <exon e_start="29600" e_stop="29680"/>
            <exon e_start="29926" e_stop="30038"/>
            <exon e_start="30120" e_stop="30342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24994" e_stop="25106" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.952">
            <gDNA_intron_boundary i_start="25107" i_stop="26073" i_length="967"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26074" e_stop="26155" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26156" i_stop="26257" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26258" e_stop="26391" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26392" i_stop="27045" i_length="654"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27046" e_stop="27128" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27129" i_stop="27299" i_length="171"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27300" e_stop="27359" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="27360" i_stop="28679" i_length="1320"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28680" e_stop="28788" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="28789" i_stop="28873" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28874" e_stop="28926" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.979">
            <gDNA_intron_boundary i_start="28927" i_stop="29599" i_length="673"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29600" e_stop="29680" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29681" i_stop="29925" i_length="245"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29926" e_stop="30038" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.978">
            <gDNA_intron_boundary i_start="30039" i_stop="30119" i_length="81"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="30120" e_stop="30342" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24994" stop="25106"/>
              <exon start="26074" stop="26155"/>
              <exon start="26258" stop="26391"/>
              <exon start="27046" stop="27128"/>
              <exon start="27300" stop="27359"/>
              <exon start="28680" stop="28788"/>
              <exon start="28874" stop="28926"/>
              <exon start="29600" stop="29680"/>
              <exon start="29926" stop="30038"/>
              <exon start="30120" stop="30342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCAAAAAGAAATAAATAAGGTTAAGGAGAGCTTCCTCCTTCTCCTACCTCAAAAATTCATCTCTGATTTTGCAATCATCTCAAATTAAATCTCCATTTATTCATAAAC : ATATATAGCTGCATATAGATAGGTTTCAGAAACTTTCAGTATTTTGGATTCATAAATAGACATAACAGAGAATGGTCGAAAG : ATATGGAGTGTTTTGAATCTGAGACGTTACCATGCTGCAGTGCTTAGGTTCTTACCTTTCGAGGTGTTGCGATCTTGATTTTAAGCAATCGGGGGGCCTCGACGATCCTGAGATACTTGCACGAGAGACAGTTT : TTAGCGTCAGCGAGATTGAAGCTCTTTATGAGCTCTTTAAGAAGATAAGCAGTGCAGTGATTGATGATGGTTTAATCAACAAG : GAAGAGTTTCAATTGGCACTTTTCAAGACAAATAAAAAGGAAAGCTTGTTTGCTGACCGG : GTGTTTGACTTGTTTGATACAAAACACAACGGAATCTTGGGATTTGAAGAATTTGCTCGTGCACTCTCTGTTTTCCATCCAAACGCACCTATCGATGACAAGATTGAAT : TTTCTTTTCAGCTATATGATCTCAAGCAACAAGGTTTTATTGAGAGACAAGAG : GTAAAGCAAATGGTAGTGGCTACTCTTGCGGAGTCTGGTATGAACCTCTCTGATGATGTGATCGAGAGCATTATTGACAAG : ACTTTTGAAGAAGCCGATACCAAGCATGATGGAAAGATCGATAAGGAGGAATGGAGAAACTTAGTGTTGCGACATCCTTCACTTTTGAAGAACATGACCCTCCAATATCTCAA : GGACATTACTACAACGTTTCCGAGCTTTGTCTTTCATTCAAGAGTTGAGGACACCTAATTTGGGATTTGACAAGAGAATTATGATTCCATGAACATAGTATAACATTCTGTTTGCTCTCTACATGGTTTCTTATTATTCTTTTTTGAATAGTTGTTTTGTGATTTATTTCTATGAATTGATTGATGTGGAGTTTCTATTGACTGATTAGAACCAAACAAAACC</gDNA_template>
            <first_frame> K  N  Q  K  E  I  N  K  V  K  E  S  F  L  L  L  L  P  Q  K  F  I  S  D  F  A  I  I  S  N  *  I  S  I  Y  S  *  T :   Y  I  A  A  Y  R  *  V  S  E  T  F  S  I  L  D  S  *  I  D  I  T  E  N  G  R  K  :  I  W  S  V  L  N  L  R  R  Y  H  A  A  V  L  R  F  L  P  F  E  V  L  R  S  *  F  *  A  I  G  G  P  R  R  S  *  D  T  C  T  R  D  S  F :   *  R  Q  R  D  *  S  S  L  *  A  L  *  E  D  K  Q  C  S  D  *  *  W  F  N  Q  Q   : G  R  V  S  I  G  T  F  Q  D  K  *  K  G  K  L  V  C  *  P   : G  V  *  L  V  *  Y  K  T  Q  R  N  L  G  I  *  R  I  C  S  C  T  L  C  F  P  S  K  R  T  Y  R  *  Q  D  *  I :   F  F  S  A  I  *  S  Q  A  T  R  F  Y  *  E  T  R   : G  K  A  N  G  S  G  Y  S  C  G  V  W  Y  E  P  L  *  *  C  D  R  E  H  Y  *  Q   : D  F  *  R  S  R  Y  Q  A  *  W  K  D  R  *  G  G  M  E  K  L  S  V  A  T  S  F  T  F  E  E  H  D  P  P  I  S  Q  :  G  H  Y  Y  N  V  S  E  L  C  L  S  F  K  S  *  G  H  L  I  W  D  L  T  R  E  L  *  F  H  E  H  S  I  T  F  C  L  L  S  T  W  F  L  I  I  L  F  *  I  V  V  L  *  F  I  S  M  N  *  L  M  W  S  F  Y  *  L  I  R  T  K  Q  N  </first_frame>
            <second_frame>  K  T  K  K  K  *  I  R  L  R  R  A  S  S  F  S  Y  L  K  N  S  S  L  I  L  Q  S  S  Q  I  K  S  P  F  I  H  K   : H  I  *  L  H  I  D  R  F  Q  K  L  S  V  F  W  I  H  K  *  T  *  Q  R  M  V  E  R :   Y  G  V  F  *  I  *  D  V  T  M  L  Q  C  L  G  S  Y  L  S  R  C  C  D  L  D  F  K  Q  S  G  G  L  D  D  P  E  I  L  A  R  E  T  V   : F  S  V  S  E  I  E  A  L  Y  E  L  F  K  K  I  S  S  A  V  I  D  D  G  L  I  N  K  :  E  E  F  Q  L  A  L  F  K  T  N  K  K  E  S  L  F  A  D  R  :  V  F  D  L  F  D  T  K  H  N  G  I  L  G  F  E  E  F  A  R  A  L  S  V  F  H  P  N  A  P  I  D  D  K  I  E   : F  S  F  Q  L  Y  D  L  K  Q  Q  G  F  I  E  R  Q  E  :  V  K  Q  M  V  V  A  T  L  A  E  S  G  M  N  L  S  D  D  V  I  E  S  I  I  D  K  :  T  F  E  E  A  D  T  K  H  D  G  K  I  D  K  E  E  W  R  N  L  V  L  R  H  P  S  L  L  K  N  M  T  L  Q  Y  L  K :   D  I  T  T  T  F  P  S  F  V  F  H  S  R  V  E  D  T  *  F  G  I  *  Q  E  N  Y  D  S  M  N  I  V  *  H  S  V  C  S  L  H  G  F  L  L  F  F  F  E  *  L  F  C  D  L  F  L  *  I  D  *  C  G  V  S  I  D  *  L  E  P  N  K  T </second_frame>
            <third_frame>   K  P  K  R  N  K  *  G  *  G  E  L  P  P  S  P  T  S  K  I  H  L  *  F  C  N  H  L  K  L  N  L  H  L  F  I  N  :  I  Y  S  C  I  *  I  G  F  R  N  F  Q  Y  F  G  F  I  N  R  H  N  R  E  W  S  K   : D  M  E  C  F  E  S  E  T  L  P  C  C  S  A  *  V  L  T  F  R  G  V  A  I  L  I  L  S  N  R  G  A  S  T  I  L  R  Y  L  H  E  R  Q  F  :  L  A  S  A  R  L  K  L  F  M  S  S  L  R  R  *  A  V  Q  *  L  M  M  V  *  S  T  R :   K  S  F  N  W  H  F  S  R  Q  I  K  R  K  A  C  L  L  T  G :   C  L  T  C  L  I  Q  N  T  T  E  S  W  D  L  K  N  L  L  V  H  S  L  F  S  I  Q  T  H  L  S  M  T  R  L  N  :  F  L  F  S  Y  M  I  S  S  N  K  V  L  L  R  D  K  R :   *  S  K  W  *  W  L  L  L  R  S  L  V  *  T  S  L  M  M  *  S  R  A  L  L  T  R :   L  L  K  K  P  I  P  S  M  M  E  R  S  I  R  R  N  G  E  T  *  C  C  D  I  L  H  F  *  R  T  *  P  S  N  I  S   : R  T  L  L  Q  R  F  R  A  L  S  F  I  Q  E  L  R  T  P  N  L  G  F  D  K  R  I  M  I  P  *  T  *  Y  N  I  L  F  A  L  Y  M  V  S  Y  Y  S  F  L  N  S  C  F  V  I  Y  F  Y  E  L  I  D  V  E  F  L  L  T  D  *  N  Q  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26280" stop="26391"/>
                    <exon start="27046" stop="27128"/>
                    <exon start="27300" stop="27359"/>
                    <exon start="28680" stop="28788"/>
                    <exon start="28874" stop="28926"/>
                    <exon start="29600" stop="29680"/>
                    <exon start="29926" stop="30038"/>
                    <exon start="30120" stop="30177"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTMLQCLGSYLSRCCDLDFKQSGGLDDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSRVEDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24995" e_stop="25106"/>
            <exon e_start="26258" e_stop="26330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="24995" e_stop="25106" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25107" i_stop="26257" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26258" e_stop="26330" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24995" stop="25106"/>
              <exon start="26258" stop="26330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336617" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCAAAAAGAAATAAATAAGGTTAAGGAGAGCTTCCTCCTTCTCCTACCTCAAAAATTCATCTCTGATTTTGCAATCATCTCAAATTAAATCTCCATTTATTCATAAAC : ATATGGAGTGTTTTGAATCTGAGACGTTACCATGCTGCAGTGCTTAGGTTCTTACCTTTCGAGGTGTTGCGAT</gDNA_template>
            <first_frame> K  T  K  K  K  *  I  R  L  R  R  A  S  S  F  S  Y  L  K  N  S  S  L  I  L  Q  S  S  Q  I  K  S  P  F  I  H  K   : H  M  E  C  F  E  S  E  T  L  P  C  C  S  A  *  V  L  T  F  R  G  V  A   </first_frame>
            <second_frame>  K  P  K  R  N  K  *  G  *  G  E  L  P  P  S  P  T  S  K  I  H  L  *  F  C  N  H  L  K  L  N  L  H  L  F  I  N  :  I  W  S  V  L  N  L  R  R  Y  H  A  A  V  L  R  F  L  P  F  E  V  L  R  </second_frame>
            <third_frame>   N  Q  K  E  I  N  K  V  K  E  S  F  L  L  L  L  P  Q  K  F  I  S  D  F  A  I  I  S  N  *  I  S  I  Y  S  *  T :   Y  G  V  F  *  I  *  D  V  T  M  L  Q  C  L  G  S  Y  L  S  R  C  C  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0119A22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="36353" PGL_stop="32888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36353" e_stop="36159"/>
            <exon e_start="35163" e_stop="35022"/>
            <exon e_start="34911" e_stop="32888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.229" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36353" e_stop="36159" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35163" e_stop="35022" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.229" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34911" e_stop="32888" e_length="2024"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36353" stop="36159"/>
              <exon start="35163" stop="35022"/>
              <exon start="34911" stop="32888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36329" stop="36159"/>
              <exon start="35163" stop="35022"/>
              <exon start="34911" stop="34817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34469" stop="33693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33512" stop="32947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333574" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33223" stop="32888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTGCATTCGAGTCCCTTTGTGTTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT : GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG : ATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAGGAGTTCATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGTCAATTCGGTGTAGGTTTCTACTCTGCTTACTTGGTAGCTGAGAAGGTTGTTGTGACCACAAAGCACAATGATGATGAGCAATATGTCTGGGAGTCTCAAGCCGGTGGCTCTTTCACTGTTACCAGGGATACATCTGGTGAGAACCTTGGTAGGGGTACCAAGATGGTCCTTTATCTCAAGGAGGATCAGCTTGAATACCTTGAAGAACGTAGGCTCAAGGACCTGATTAAGAAGCACTCTGAGTTCATTAGCTATCCTATTTCTCTGTGGGTTGAGAAGACCATAGAGAAGGAAATTTCTGATGATGAGGAGGAAGAGGAGAAGAAAGATGAGGAGGGAAAGGTAGAGGAGGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAAGCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</gDNA_template>
            <first_frame> L  L  H  S  S  P  F  V  F  H  F  A  L  Q  F  S  S  A  R  *  I  Y  K  K  M  S  D  V  E  T  F  A  F  Q  A  E  I  N  Q  L  L  S  L  I  I  N  T  F  Y  S  N  K  E  I  F  L  R  E  L  I  S  N  S  S  D  :  A  L  D  K  I  R  F  E  S  L  T  D  K  S  K  L  D  G  Q  P  E  L  F  I  H  I  I  P  D  K  A  N  N  T  L  T  I  I  D  S  G  I  G  M  T  K  A   : D  L  V  N  N  L  G  T  I  A  R  S  G  T  K  E  F  M  E  A  L  A  A  G  A  D  V  S  M  I  G  Q  F  G  V  G  F  Y  S  A  Y  L  V  A  E  K  V  V  V  T  T  K  H  N  D  D  E  Q  Y  V  W  E  S  Q  A  G  G  S  F  T  V  T  R  D  T  S  G  E  N  L  G  R  G  T  K  M  V  L  Y  L  K  E  D  Q  L  E  Y  L  E  E  R  R  L  K  D  L  I  K  K  H  S  E  F  I  S  Y  P  I  S  L  W  V  E  K  T  I  E  K  E  I  S  D  D  E  E  E  E  E  K  K  D  E  E  G  K  V  E  E  V  D  E  E  K  E  K  E  E  K  K  K  K  K  V  K  E  V  S  N  E  W  S  L  V  N  K  Q  K  P  I  W  M  R  K  P  E  E  I  T  K  E  E  Y  A  A  F  Y  K  S  L  T  N  D  W  E  E  H  L  A  V  K  H  F  S  V  E  G  Q  L  E  F  K  A  V  L  F  V  P  K  R  A  P  F  D  L  F  D  T  K  K  K  P  N  N  I  K  L  Y  V  R  R  V  F  I  M  D  N  C  D  E  L  I  P  E  Y  L  S  F  V  K  G  I  V  D  S  E  D  L  P  L  N  I  S  R  E  T  L  Q  Q  N  K  I  L  K  V  I  R  K  N  L  V  K  K  C  V  E  L  F  F  E  I  A  E  N  K  E  D  Y  N  K  F  Y  E  A  F  S  K  N  L  K  L  G  I  H  E  D  S  Q  N  R  A  K  F  A  E  L  L  R  Y  H  S  T  K  S  G  D  E  M  T  S  L  K  D  Y  V  T  R  M  K  E  G  Q  N  D  I  Y  Y  I  T  G  E  S  K  K  A  V  E  N  S  P  F  L  E  K  L  K  K  K  G  Y  E  V  L  Y  M  V  D  A  I  D  E  Y  S  I  G  Q  L  K  E  F  E  G  K  K  L  V  S  A  T  K  E  G  L  K  L  D  E  S  E  D  E  K  K  K  Q  E  E  L  K  E  K  F  E  G  L  C  K  V  M  K  D  V  L  G  D  K  V  E  K  V  I  V  S  D  R  V  V  D  S  P  C  C  L  V  T  G  E  Y  G  W  T  A  N  M  E  R  I  M  K  A  Q  A  L  R  D  S  S  M  A  G  Y  M  S  S  K  K  T  M  E  I  N  P  E  N  S  I  M  D  E  L  R  K  R  A  D  A  D  K  N  D  K  S  V  K  D  L  V  L  L  L  F  E  T  A  L  L  T  S  G  F  S  L  E  E  P  N  T  F  G  N  R  I  H  R  M  L  K  L  G  L  S  I  D  E  E  S  G  D  A  D  A  D  M  P  A  L  E  D  P  E  A  D  A  E  G  S  K  M  E  E  V  D  *  V  H  *  C  F  D  S  F  M  G  S  F  T  T  T  L  F  P  S  F  C  F  I  P  S  E  Q  Y  V  R  V  L  M  P  F  F  *  N  G  S  S  M  L  G  Y  N  S  L  F  C  F  D  I  R  G  *  Y  S  L  F  S  C  P </first_frame>
            <second_frame>  S  C  I  R  V  P  L  C  S  I  S  P  Y  S  F  L  Q  L  V  R  S  T  K  K  C  R  T  *  R  R  L  L  S  R  L  R  S  I  S  F  S  V  L  S  S  T  L  S  T  A  T  R  R  S  F  S  V  N  S  S  A  I  L  P  M :   L  *  T  R  S  A  L  R  V  *  P  T  R  A  S  *  M  V  N  Q  S  S  S  S  I  L  F  Q  T  R  P  I  I  L  S  L  S  L  I  V  V  L  V  *  Q  R  L  :  I  W  *  I  T  W  V  Q  L  Q  G  Q  E  P  R  S  S  W  K  L  L  Q  L  V  L  M  L  A  *  L  V  N  S  V  *  V  S  T  L  L  T  W  *  L  R  R  L  L  *  P  Q  S  T  M  M  M  S  N  M  S  G  S  L  K  P  V  A  L  S  L  L  P  G  I  H  L  V  R  T  L  V  G  V  P  R  W  S  F  I  S  R  R  I  S  L  N  T  L  K  N  V  G  S  R  T  *  L  R  S  T  L  S  S  L  A  I  L  F  L  C  G  L  R  R  P  *  R  R  K  F  L  M  M  R  R  K  R  R  R  K  M  R  R  E  R  *  R  R  S  M  R  K  R  R  R  K  R  R  K  R  R  R  S  K  K  F  P  M  S  G  H  W  *  T  S  R  S  L  F  G  *  E  S  Q  K  R  S  Q  R  K  S  M  L  L  S  T  R  A  *  L  M  I  G  K  S  I  L  L  *  S  T  S  L  L  R  V  S  W  S  S  R  L  S  F  L  F  Q  K  G  L  L  L  T  S  L  T  Q  R  R  S  P  T  T  S  S  C  M  F  A  V  C  L  S  W  I  T  V  M  S  *  F  L  N  I  *  A  L  *  R  V  L  W  I  L  R  T  F  L  S  T  S  P  E  R  H  C  S  R  T  R  S  *  R  L  F  A  R  I  W  *  R  S  V  L  S  F  S  L  K  L  L  R  T  R  R  T  T  I  S  S  M  R  R  S  L  K  T  S  S  L  E  S  M  R  I  L  R  T  G  Q  S  L  L  N  C  *  G  T  T  P  L  R  V  V  M  R  *  P  A  *  R  T  M  *  P  E  *  R  R  A  R  M  I  F  T  T  L  L  V  R  A  R  R  L  L  R  T  L  P  S  W  R  N  *  R  R  R  D  M  R  C  F  T  W  L  M  P  L  M  S  I  Q  L  V  S  *  R  N  L  R  A  K  S  L  F  L  L  P  R  K  A  S  S  L  M  R  V  K  M  R  R  K  S  R  K  N  *  R  R  S  L  R  D  C  V  R  *  *  R  M  C  *  E  T  K  L  K  R  S  L  F  L  T  V  L  L  T  L  P  A  V  W  S  L  V  S  M  A  G  L  L  T  W  R  E  L  *  R  H  R  H  L  G  T  P  A  W  L  D  T  C  L  A  R  R  P  W  R  S  T  Q  R  T  P  S  W  M  S  *  G  R  G  L  M  Q  T  R  M  T  S  L  *  R  T  W  F  S  C  F  L  R  L  P  F  S  P  Q  V  S  A  S  R  S  Q  T  P  L  A  T  E  F  T  G  C  *  N  S  V  *  A  L  M  R  K  A  E  M  L  M  L  T  C  Q  H  W  R  I  L  K  L  M  L  R  A  A  R  W  R  R  L  I  K  F  I  N  V  L  I  V  L  W  V  P  L  L  L  L  Y  S  L  V  F  A  L  S  H  Q  N  N  M  *  G  F  *  C  R  S  F  R  M  A  V  Q  C  *  V  I  I  L  F  F  V  L  T  F  V  V  D  I  V  Y  F  L  A   </second_frame>
            <third_frame>   L  A  F  E  S  L  C  V  P  F  R  L  T  V  F  F  S  S  L  D  L  Q  K  N  V  G  R  R  D  V  C  F  P  G  *  D  Q  S  A  S  Q  S  Y  H  Q  H  F  L  Q  Q  Q  G  D  L  S  P  *  T  H  Q  Q  F  F  R   : C  S  R  Q  D  P  L  *  E  F  N  R  Q  E  Q  A  R  W  S  T  R  A  L  H  P  Y  Y  S  R  Q  G  Q  *  Y  S  H  Y  H  *  *  W  Y  W  Y  D  K  G  * :   S  G  E  *  P  G  Y  N  C  K  V  R  N  Q  G  V  H  G  S  S  C  S  W  C  *  C  *  H  D  W  S  I  R  C  R  F  L  L  C  L  L  G  S  *  E  G  C  C  D  H  K  A  Q  *  *  *  A  I  C  L  G  V  S  S  R  W  L  F  H  C  Y  Q  G  Y  I  W  *  E  P  W  *  G  Y  Q  D  G  P  L  S  Q  G  G  S  A  *  I  P  *  R  T  *  A  Q  G  P  D  *  E  A  L  *  V  H  *  L  S  Y  F  S  V  G  *  E  D  H  R  E  G  N  F  *  *  *  G  G  R  G  E  E  R  *  G  G  K  G  R  G  G  R  *  G  K  G  E  G  R  E  E  K  E  E  G  Q  R  S  F  Q  *  V  V  T  G  E  Q  A  E  A  Y  L  D  E  K  A  R  R  D  H  K  G  R  V  C  C  F  L  Q  E  L  D  *  *  L  G  R  A  S  C  C  E  A  L  L  C  *  G  S  V  G  V  Q  G  C  P  F  C  S  K  K  G  S  F  *  P  L  *  H  K  E  E  A  Q  Q  H  Q  V  V  C  S  P  C  V  Y  H  G  *  L  *  *  V  D  S  *  I  F  E  L  C  E  G  Y  C  G  F  *  G  P  S  S  Q  H  L  Q  R  D  I  A  A  E  Q  D  P  K  G  Y  S  Q  E  F  G  E  E  V  C  *  A  F  L  *  N  C  *  E  Q  G  G  L  Q  *  V  L  *  G  V  L  *  K  P  Q  A  W  N  P  *  G  F  S  E  Q  G  K  V  C  *  T  A  E  V  P  L  H  *  E  W  *  *  D  D  Q  L  E  G  L  C  D  Q  N  E  G  G  P  E  *  Y  L  L  H  Y  W  *  E  Q  E  G  C  *  E  L  S  L  P  G  E  T  E  E  E  G  I  *  G  A  L  H  G  *  C  H  *  *  V  F  N  W  S  A  E  G  I  *  G  Q  K  A  C  F  C  Y  Q  G  R  P  Q  A  *  *  E  *  R  *  E  E  K  A  G  R  I  E  G  E  V  *  G  T  V  *  G  D  E  G  C  A  R  R  Q  S  *  K  G  H  C  F  *  P  C  C  *  L  S  L  L  F  G  H  W  *  V  W  L  D  C  *  H  G  E  N  Y  E  G  T  G  T  *  G  L  Q  H  G  W  I  H  V  *  Q  E  D  H  G  D  Q  P  R  E  L  H  H  G  *  A  K  E  E  G  *  C  R  Q  E  *  Q  V  C  E  G  L  G  S  L  A  F  *  D  C  P  S  H  L  R  F  Q  P  R  G  A  K  H  L  W  Q  Q  N  S  Q  D  V  E  T  R  F  E  H  *  *  G  K  R  R  C  *  C  *  H  A  S  I  G  G  S  *  S  *  C  *  G  Q  Q  D  G  G  G  *  L  S  S  L  M  F  *  *  F  Y  G  F  L  Y  Y  Y  F  I  P  *  F  L  L  Y  P  I  R  T  I  C  E  G  F  N  A  V  L  L  E  W  Q  F  N  V  R  L  *  F  S  F  L  F  *  H  S  W  L  I  *  F  I  F  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36293" stop="36159"/>
                    <exon start="35163" stop="35022"/>
                    <exon start="34911" stop="33077"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2109</number_coding_nucleotides>
                  <number_encoded_amino_acids>703</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKKMSDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGENLGRGTKMVLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKVKEVSNEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCDELIPEYLSFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34068" e_stop="33973"/>
            <exon e_start="33915" e_stop="32888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="34068" e_stop="33973" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33972" i_stop="33916" i_length="57"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33915" e_stop="32888" e_length="1028"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34068" stop="33973"/>
              <exon start="33915" stop="33279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33512" stop="32947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333574" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33223" stop="32888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACA : ATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</gDNA_template>
            <first_frame> P  E  R  H  C  S  R  T  R  S  *  R  L  F  A  R  I  W  *  R  S  V  L  S  F  S  L  K  L  L  R  T  :  M  R  I  L  R  T  G  Q  S  L  L  N  C  *  G  T  T  P  L  R  V  V  M  R  *  P  A  *  R  T  M  *  P  E  *  R  R  A  R  M  I  F  T  T  L  L  V  R  A  R  R  L  L  R  T  L  P  S  W  R  N  *  R  R  R  D  M  R  C  F  T  W  L  M  P  L  M  S  I  Q  L  V  S  *  R  N  L  R  A  K  S  L  F  L  L  P  R  K  A  S  S  L  M  R  V  K  M  R  R  K  S  R  K  N  *  R  R  S  L  R  D  C  V  R  *  *  R  M  C  *  E  T  K  L  K  R  S  L  F  L  T  V  L  L  T  L  P  A  V  W  S  L  V  S  M  A  G  L  L  T  W  R  E  L  *  R  H  R  H  L  G  T  P  A  W  L  D  T  C  L  A  R  R  P  W  R  S  T  Q  R  T  P  S  W  M  S  *  G  R  G  L  M  Q  T  R  M  T  S  L  *  R  T  W  F  S  C  F  L  R  L  P  F  S  P  Q  V  S  A  S  R  S  Q  T  P  L  A  T  E  F  T  G  C  *  N  S  V  *  A  L  M  R  K  A  E  M  L  M  L  T  C  Q  H  W  R  I  L  K  L  M  L  R  A  A  R  W  R  R  L  I  K  F  I  N  V  L  I  V  L  W  V  P  L  L  L  L  Y  S  L  V  F  A  L  S  H  Q  N  N  M  *  G  F  *  C  R  S  F  R  M  A  V  Q  C  *  V  I  I  L  F  F  V  L  T  F  V  V  D  I  V  Y  F  L  A   </first_frame>
            <second_frame>  Q  R  D  I  A  A  E  Q  D  P  K  G  Y  S  Q  E  F  G  E  E  V  C  *  A  F  L  *  N  C  *  E  Q :   *  G  F  S  E  Q  G  K  V  C  *  T  A  E  V  P  L  H  *  E  W  *  *  D  D  Q  L  E  G  L  C  D  Q  N  E  G  G  P  E  *  Y  L  L  H  Y  W  *  E  Q  E  G  C  *  E  L  S  L  P  G  E  T  E  E  E  G  I  *  G  A  L  H  G  *  C  H  *  *  V  F  N  W  S  A  E  G  I  *  G  Q  K  A  C  F  C  Y  Q  G  R  P  Q  A  *  *  E  *  R  *  E  E  K  A  G  R  I  E  G  E  V  *  G  T  V  *  G  D  E  G  C  A  R  R  Q  S  *  K  G  H  C  F  *  P  C  C  *  L  S  L  L  F  G  H  W  *  V  W  L  D  C  *  H  G  E  N  Y  E  G  T  G  T  *  G  L  Q  H  G  W  I  H  V  *  Q  E  D  H  G  D  Q  P  R  E  L  H  H  G  *  A  K  E  E  G  *  C  R  Q  E  *  Q  V  C  E  G  L  G  S  L  A  F  *  D  C  P  S  H  L  R  F  Q  P  R  G  A  K  H  L  W  Q  Q  N  S  Q  D  V  E  T  R  F  E  H  *  *  G  K  R  R  C  *  C  *  H  A  S  I  G  G  S  *  S  *  C  *  G  Q  Q  D  G  G  G  *  L  S  S  L  M  F  *  *  F  Y  G  F  L  Y  Y  Y  F  I  P  *  F  L  L  Y  P  I  R  T  I  C  E  G  F  N  A  V  L  L  E  W  Q  F  N  V  R  L  *  F  S  F  L  F  *  H  S  W  L  I  *  F  I  F  L  P  </second_frame>
            <third_frame>   R  E  T  L  Q  Q  N  K  I  L  K  V  I  R  K  N  L  V  K  K  C  V  E  L  F  F  E  I  A  E  N   : N  E  D  S  Q  N  R  A  K  F  A  E  L  L  R  Y  H  S  T  K  S  G  D  E  M  T  S  L  K  D  Y  V  T  R  M  K  E  G  Q  N  D  I  Y  Y  I  T  G  E  S  K  K  A  V  E  N  S  P  F  L  E  K  L  K  K  K  G  Y  E  V  L  Y  M  V  D  A  I  D  E  Y  S  I  G  Q  L  K  E  F  E  G  K  K  L  V  S  A  T  K  E  G  L  K  L  D  E  S  E  D  E  K  K  K  Q  E  E  L  K  E  K  F  E  G  L  C  K  V  M  K  D  V  L  G  D  K  V  E  K  V  I  V  S  D  R  V  V  D  S  P  C  C  L  V  T  G  E  Y  G  W  T  A  N  M  E  R  I  M  K  A  Q  A  L  R  D  S  S  M  A  G  Y  M  S  S  K  K  T  M  E  I  N  P  E  N  S  I  M  D  E  L  R  K  R  A  D  A  D  K  N  D  K  S  V  K  D  L  V  L  L  L  F  E  T  A  L  L  T  S  G  F  S  L  E  E  P  N  T  F  G  N  R  I  H  R  M  L  K  L  G  L  S  I  D  E  E  S  G  D  A  D  A  D  M  P  A  L  E  D  P  E  A  D  A  E  G  S  K  M  E  E  V  D  *  V  H  *  C  F  D  S  F  M  G  S  F  T  T  T  L  F  P  S  F  C  F  I  P  S  E  Q  Y  V  R  V  L  M  P  F  F  *  N  G  S  S  M  L  G  Y  N  S  L  F  C  F  D  I  R  G  *  Y  S  L  F  S  C  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34066" stop="33973"/>
                    <exon start="33915" stop="33077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RETLQQNKILKVIRKNLVKKCVELFFEIAENNEDSQNRAKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36329" e_stop="36159"/>
            <exon e_start="35163" e_stop="35022"/>
            <exon e_start="34911" e_stop="34894"/>
            <exon e_start="33738" e_stop="32888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.229" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36329" e_stop="36159" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35163" e_stop="35022" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.229" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34911" e_stop="34894" e_length="18"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34893" i_stop="33739" i_length="1155"/>
          </intron>
          <exon e_serial="4" e_score="0.952">
            <gDNA_exon_boundary e_start="33738" e_stop="32888" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36329" stop="36159"/>
              <exon start="35163" stop="35022"/>
              <exon start="34911" stop="34894"/>
              <exon start="33738" stop="33423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33512" stop="32947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333574" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33223" stop="32888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT : GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG : ATCTGGTGAATAACCTGG : AGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</gDNA_template>
            <first_frame> F  H  F  A  L  Q  F  S  S  A  R  *  I  Y  K  K  M  S  D  V  E  T  F  A  F  Q  A  E  I  N  Q  L  L  S  L  I  I  N  T  F  Y  S  N  K  E  I  F  L  R  E  L  I  S  N  S  S  D  :  A  L  D  K  I  R  F  E  S  L  T  D  K  S  K  L  D  G  Q  P  E  L  F  I  H  I  I  P  D  K  A  N  N  T  L  T  I  I  D  S  G  I  G  M  T  K  A   : D  L  V  N  N  L   : E  K  L  K  K  K  G  Y  E  V  L  Y  M  V  D  A  I  D  E  Y  S  I  G  Q  L  K  E  F  E  G  K  K  L  V  S  A  T  K  E  G  L  K  L  D  E  S  E  D  E  K  K  K  Q  E  E  L  K  E  K  F  E  G  L  C  K  V  M  K  D  V  L  G  D  K  V  E  K  V  I  V  S  D  R  V  V  D  S  P  C  C  L  V  T  G  E  Y  G  W  T  A  N  M  E  R  I  M  K  A  Q  A  L  R  D  S  S  M  A  G  Y  M  S  S  K  K  T  M  E  I  N  P  E  N  S  I  M  D  E  L  R  K  R  A  D  A  D  K  N  D  K  S  V  K  D  L  V  L  L  L  F  E  T  A  L  L  T  S  G  F  S  L  E  E  P  N  T  F  G  N  R  I  H  R  M  L  K  L  G  L  S  I  D  E  E  S  G  D  A  D  A  D  M  P  A  L  E  D  P  E  A  D  A  E  G  S  K  M  E  E  V  D  *  V  H  *  C  F  D  S  F  M  G  S  F  T  T  T  L  F  P  S  F  C  F  I  P  S  E  Q  Y  V  R  V  L  M  P  F  F  *  N  G  S  S  M  L  G  Y  N  S  L  F  C  F  D  I  R  G  *  Y  S  L  F  S  C  P </first_frame>
            <second_frame>  S  I  S  P  Y  S  F  L  Q  L  V  R  S  T  K  K  C  R  T  *  R  R  L  L  S  R  L  R  S  I  S  F  S  V  L  S  S  T  L  S  T  A  T  R  R  S  F  S  V  N  S  S  A  I  L  P  M :   L  *  T  R  S  A  L  R  V  *  P  T  R  A  S  *  M  V  N  Q  S  S  S  S  I  L  F  Q  T  R  P  I  I  L  S  L  S  L  I  V  V  L  V  *  Q  R  L  :  I  W  *  I  T  W  :  R  N  *  R  R  R  D  M  R  C  F  T  W  L  M  P  L  M  S  I  Q  L  V  S  *  R  N  L  R  A  K  S  L  F  L  L  P  R  K  A  S  S  L  M  R  V  K  M  R  R  K  S  R  K  N  *  R  R  S  L  R  D  C  V  R  *  *  R  M  C  *  E  T  K  L  K  R  S  L  F  L  T  V  L  L  T  L  P  A  V  W  S  L  V  S  M  A  G  L  L  T  W  R  E  L  *  R  H  R  H  L  G  T  P  A  W  L  D  T  C  L  A  R  R  P  W  R  S  T  Q  R  T  P  S  W  M  S  *  G  R  G  L  M  Q  T  R  M  T  S  L  *  R  T  W  F  S  C  F  L  R  L  P  F  S  P  Q  V  S  A  S  R  S  Q  T  P  L  A  T  E  F  T  G  C  *  N  S  V  *  A  L  M  R  K  A  E  M  L  M  L  T  C  Q  H  W  R  I  L  K  L  M  L  R  A  A  R  W  R  R  L  I  K  F  I  N  V  L  I  V  L  W  V  P  L  L  L  L  Y  S  L  V  F  A  L  S  H  Q  N  N  M  *  G  F  *  C  R  S  F  R  M  A  V  Q  C  *  V  I  I  L  F  F  V  L  T  F  V  V  D  I  V  Y  F  L  A   </second_frame>
            <third_frame>   P  F  R  L  T  V  F  F  S  S  L  D  L  Q  K  N  V  G  R  R  D  V  C  F  P  G  *  D  Q  S  A  S  Q  S  Y  H  Q  H  F  L  Q  Q  Q  G  D  L  S  P  *  T  H  Q  Q  F  F  R   : C  S  R  Q  D  P  L  *  E  F  N  R  Q  E  Q  A  R  W  S  T  R  A  L  H  P  Y  Y  S  R  Q  G  Q  *  Y  S  H  Y  H  *  *  W  Y  W  Y  D  K  G  * :   S  G  E  *  P  G :   E  T  E  E  E  G  I  *  G  A  L  H  G  *  C  H  *  *  V  F  N  W  S  A  E  G  I  *  G  Q  K  A  C  F  C  Y  Q  G  R  P  Q  A  *  *  E  *  R  *  E  E  K  A  G  R  I  E  G  E  V  *  G  T  V  *  G  D  E  G  C  A  R  R  Q  S  *  K  G  H  C  F  *  P  C  C  *  L  S  L  L  F  G  H  W  *  V  W  L  D  C  *  H  G  E  N  Y  E  G  T  G  T  *  G  L  Q  H  G  W  I  H  V  *  Q  E  D  H  G  D  Q  P  R  E  L  H  H  G  *  A  K  E  E  G  *  C  R  Q  E  *  Q  V  C  E  G  L  G  S  L  A  F  *  D  C  P  S  H  L  R  F  Q  P  R  G  A  K  H  L  W  Q  Q  N  S  Q  D  V  E  T  R  F  E  H  *  *  G  K  R  R  C  *  C  *  H  A  S  I  G  G  S  *  S  *  C  *  G  Q  Q  D  G  G  G  *  L  S  S  L  M  F  *  *  F  Y  G  F  L  Y  Y  Y  F  I  P  *  F  L  L  Y  P  I  R  T  I  C  E  G  F  N  A  V  L  L  E  W  Q  F  N  V  R  L  *  F  S  F  L  F  *  H  S  W  L  I  *  F  I  F  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36293" stop="36159"/>
                    <exon start="35163" stop="35022"/>
                    <exon start="34911" stop="34894"/>
                    <exon start="33738" stop="33077"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKKMSDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="36335" e_stop="36159"/>
            <exon e_start="35163" e_stop="35022"/>
            <exon e_start="34911" e_stop="34868"/>
            <exon e_start="33625" e_stop="32888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.229" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36335" e_stop="36159" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35163" e_stop="35022" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.229" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34911" e_stop="34868" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34867" i_stop="33626" i_length="1242"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="33625" e_stop="32888" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36335" stop="36159"/>
              <exon start="35163" stop="35022"/>
              <exon start="34911" stop="34868"/>
              <exon start="33625" stop="32947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33512" stop="32947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333574" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33223" stop="32888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTGTTCCATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT : GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG : ATCTGGTGAATAACCTGGGTACAATTGCAAGGTCAGGAACCAAG : GAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAGAGAATTATGAAGGCACAGGCACTTAGGGACTCCAGCATGGCTGGATACATGTCTAGCAAGAAGACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</gDNA_template>
            <first_frame> F  V  F  H  F  A  L  Q  F  S  S  A  R  *  I  Y  K  K  M  S  D  V  E  T  F  A  F  Q  A  E  I  N  Q  L  L  S  L  I  I  N  T  F  Y  S  N  K  E  I  F  L  R  E  L  I  S  N  S  S  D  :  A  L  D  K  I  R  F  E  S  L  T  D  K  S  K  L  D  G  Q  P  E  L  F  I  H  I  I  P  D  K  A  N  N  T  L  T  I  I  D  S  G  I  G  M  T  K  A   : D  L  V  N  N  L  G  T  I  A  R  S  G  T  K  :  E  G  L  K  L  D  E  S  E  D  E  K  K  K  Q  E  E  L  K  E  K  F  E  G  L  C  K  V  M  K  D  V  L  G  D  K  V  E  K  V  I  V  S  D  R  V  V  D  S  P  C  C  L  V  T  G  E  Y  G  W  T  A  N  M  E  R  I  M  K  A  Q  A  L  R  D  S  S  M  A  G  Y  M  S  S  K  K  T  M  E  I  N  P  E  N  S  I  M  D  E  L  R  K  R  A  D  A  D  K  N  D  K  S  V  K  D  L  V  L  L  L  F  E  T  A  L  L  T  S  G  F  S  L  E  E  P  N  T  F  G  N  R  I  H  R  M  L  K  L  G  L  S  I  D  E  E  S  G  D  A  D  A  D  M  P  A  L  E  D  P  E  A  D  A  E  G  S  K  M  E  E  V  D  *  V  H  *  C  F  D  S  F  M  G  S  F  T  T  T  L  F  P  S  F  C  F  I  P  S  E  Q  Y  V  R  V  L  M  P  F  F  *  N  G  S  S  M  L  G  Y  N  S  L  F  C  F  D  I  R  G  *  Y  S  L  F  S  C  P </first_frame>
            <second_frame>  L  C  S  I  S  P  Y  S  F  L  Q  L  V  R  S  T  K  K  C  R  T  *  R  R  L  L  S  R  L  R  S  I  S  F  S  V  L  S  S  T  L  S  T  A  T  R  R  S  F  S  V  N  S  S  A  I  L  P  M :   L  *  T  R  S  A  L  R  V  *  P  T  R  A  S  *  M  V  N  Q  S  S  S  S  I  L  F  Q  T  R  P  I  I  L  S  L  S  L  I  V  V  L  V  *  Q  R  L  :  I  W  *  I  T  W  V  Q  L  Q  G  Q  E  P  R :   K  A  S  S  L  M  R  V  K  M  R  R  K  S  R  K  N  *  R  R  S  L  R  D  C  V  R  *  *  R  M  C  *  E  T  K  L  K  R  S  L  F  L  T  V  L  L  T  L  P  A  V  W  S  L  V  S  M  A  G  L  L  T  W  R  E  L  *  R  H  R  H  L  G  T  P  A  W  L  D  T  C  L  A  R  R  P  W  R  S  T  Q  R  T  P  S  W  M  S  *  G  R  G  L  M  Q  T  R  M  T  S  L  *  R  T  W  F  S  C  F  L  R  L  P  F  S  P  Q  V  S  A  S  R  S  Q  T  P  L  A  T  E  F  T  G  C  *  N  S  V  *  A  L  M  R  K  A  E  M  L  M  L  T  C  Q  H  W  R  I  L  K  L  M  L  R  A  A  R  W  R  R  L  I  K  F  I  N  V  L  I  V  L  W  V  P  L  L  L  L  Y  S  L  V  F  A  L  S  H  Q  N  N  M  *  G  F  *  C  R  S  F  R  M  A  V  Q  C  *  V  I  I  L  F  F  V  L  T  F  V  V  D  I  V  Y  F  L  A   </second_frame>
            <third_frame>   C  V  P  F  R  L  T  V  F  F  S  S  L  D  L  Q  K  N  V  G  R  R  D  V  C  F  P  G  *  D  Q  S  A  S  Q  S  Y  H  Q  H  F  L  Q  Q  Q  G  D  L  S  P  *  T  H  Q  Q  F  F  R   : C  S  R  Q  D  P  L  *  E  F  N  R  Q  E  Q  A  R  W  S  T  R  A  L  H  P  Y  Y  S  R  Q  G  Q  *  Y  S  H  Y  H  *  *  W  Y  W  Y  D  K  G  * :   S  G  E  *  P  G  Y  N  C  K  V  R  N  Q   : G  R  P  Q  A  *  *  E  *  R  *  E  E  K  A  G  R  I  E  G  E  V  *  G  T  V  *  G  D  E  G  C  A  R  R  Q  S  *  K  G  H  C  F  *  P  C  C  *  L  S  L  L  F  G  H  W  *  V  W  L  D  C  *  H  G  E  N  Y  E  G  T  G  T  *  G  L  Q  H  G  W  I  H  V  *  Q  E  D  H  G  D  Q  P  R  E  L  H  H  G  *  A  K  E  E  G  *  C  R  Q  E  *  Q  V  C  E  G  L  G  S  L  A  F  *  D  C  P  S  H  L  R  F  Q  P  R  G  A  K  H  L  W  Q  Q  N  S  Q  D  V  E  T  R  F  E  H  *  *  G  K  R  R  C  *  C  *  H  A  S  I  G  G  S  *  S  *  C  *  G  Q  Q  D  G  G  G  *  L  S  S  L  M  F  *  *  F  Y  G  F  L  Y  Y  Y  F  I  P  *  F  L  L  Y  P  I  R  T  I  C  E  G  F  N  A  V  L  L  E  W  Q  F  N  V  R  L  *  F  S  F  L  F  *  H  S  W  L  I  *  F  I  F  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36293" stop="36159"/>
                    <exon start="35163" stop="35022"/>
                    <exon start="34911" stop="34868"/>
                    <exon start="33625" stop="33077"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKKMSDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="33603" e_stop="33431"/>
            <exon e_start="33358" e_stop="32888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33603" e_stop="33431" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33430" i_stop="33359" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33358" e_stop="32888" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33603" stop="33431"/>
              <exon start="33358" stop="32888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33223" stop="32888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGTTTGAGGGACTGTGTAAGGTGATGAAGGATGTGCTAGGAGACAAAGTTGAAAAGGTCATTGTTTCTGACCGTGTTGTTGACTCTCCCTGCTGTTTGGTCACTGGTGAGTATGGCTGGACTGCTAACATGGAG : ATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTGAAGGACTTGGTTCTCTTGCTTTTTGAGACTGCCCTTCTCACCTCAGGTTTCAGCCTCGAGGAGCCAAACACCTTTGGCAACAGAATTCACAGGATGTTGAAACTCGGTTTGAGCATTGATGAGGAAAGCGGAGATGCTGATGCTGACATGCCAGCATTGGAGGATCCTGAAGCTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTTTGTTTTGACATTCGTGGTTGATATAGTTTATTTTCTTGCCCA</gDNA_template>
            <first_frame> V  K  M  R  R  K  S  R  K  N  *  R  R  S  L  R  D  C  V  R  *  *  R  M  C  *  E  T  K  L  K  R  S  L  F  L  T  V  L  L  T  L  P  A  V  W  S  L  V  S  M  A  G  L  L  T  W  R :   S  T  Q  R  T  P  S  W  M  S  *  G  R  G  L  M  Q  T  R  M  T  S  L  *  R  T  W  F  S  C  F  L  R  L  P  F  S  P  Q  V  S  A  S  R  S  Q  T  P  L  A  T  E  F  T  G  C  *  N  S  V  *  A  L  M  R  K  A  E  M  L  M  L  T  C  Q  H  W  R  I  L  K  L  M  L  R  A  A  R  W  R  R  L  I  K  F  I  N  V  L  I  V  L  W  V  P  L  L  L  L  Y  S  L  V  F  A  L  S  H  Q  N  N  M  *  G  F  *  C  R  S  F  R  M  A  V  Q  C  *  V  I  I  L  F  F  V  L  T  F  V  V  D  I  V  Y  F  L  A   </first_frame>
            <second_frame>  *  R  *  E  E  K  A  G  R  I  E  G  E  V  *  G  T  V  *  G  D  E  G  C  A  R  R  Q  S  *  K  G  H  C  F  *  P  C  C  *  L  S  L  L  F  G  H  W  *  V  W  L  D  C  *  H  G   : D  Q  P  R  E  L  H  H  G  *  A  K  E  E  G  *  C  R  Q  E  *  Q  V  C  E  G  L  G  S  L  A  F  *  D  C  P  S  H  L  R  F  Q  P  R  G  A  K  H  L  W  Q  Q  N  S  Q  D  V  E  T  R  F  E  H  *  *  G  K  R  R  C  *  C  *  H  A  S  I  G  G  S  *  S  *  C  *  G  Q  Q  D  G  G  G  *  L  S  S  L  M  F  *  *  F  Y  G  F  L  Y  Y  Y  F  I  P  *  F  L  L  Y  P  I  R  T  I  C  E  G  F  N  A  V  L  L  E  W  Q  F  N  V  R  L  *  F  S  F  L  F  *  H  S  W  L  I  *  F  I  F  L  P  </second_frame>
            <third_frame>   E  D  E  K  K  K  Q  E  E  L  K  E  K  F  E  G  L  C  K  V  M  K  D  V  L  G  D  K  V  E  K  V  I  V  S  D  R  V  V  D  S  P  C  C  L  V  T  G  E  Y  G  W  T  A  N  M  E  :  I  N  P  E  N  S  I  M  D  E  L  R  K  R  A  D  A  D  K  N  D  K  S  V  K  D  L  V  L  L  L  F  E  T  A  L  L  T  S  G  F  S  L  E  E  P  N  T  F  G  N  R  I  H  R  M  L  K  L  G  L  S  I  D  E  E  S  G  D  A  D  A  D  M  P  A  L  E  D  P  E  A  D  A  E  G  S  K  M  E  E  V  D  *  V  H  *  C  F  D  S  F  M  G  S  F  T  T  T  L  F  P  S  F  C  F  I  P  S  E  Q  Y  V  R  V  L  M  P  F  F  *  N  G  S  S  M  L  G  Y  N  S  L  F  C  F  D  I  R  G  *  Y  S  L  F  S  C  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33601" stop="33431"/>
                    <exon start="33358" stop="33077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDEESGDADADMPALEDPEADAEGSKMEEVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="34469" e_stop="33562"/>
            <exon e_start="33367" e_stop="33316"/>
            <exon e_start="33114" e_stop="32930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.925"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="34469" e_stop="33562" e_length="908"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33561" i_stop="33368" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="33367" e_stop="33316" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33315" i_stop="33115" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="33114" e_stop="32930" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34469" stop="33693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33991" stop="33562"/>
              <exon start="33367" stop="33316"/>
              <exon start="33114" stop="32930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCGATGAGGAAAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGGTCAAAGAAGTTTCCAATGAGTGGTCACTGGTGAACAAGCAGAAGCCTATTTGGATGAGAAAGCCAGAAGAGATCACAAAGGAAGAGTATGCTGCTTTCTACAAGAGCTTGACTAATGATTGGGAAGAGCATCTTGCTGTGAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTCAAGGCTGTCCTTTTTGTTCCAAAAAGGGCTCCTTTTGACCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGTTGTATGTTCGCCGTGTGTTTATCATGGATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGT : ACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGG : CTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTT</gDNA_template>
            <first_frame> G  R  *  G  K  G  E  G  R  E  E  K  E  E  G  Q  R  S  F  Q  *  V  V  T  G  E  Q  A  E  A  Y  L  D  E  K  A  R  R  D  H  K  G  R  V  C  C  F  L  Q  E  L  D  *  *  L  G  R  A  S  C  C  E  A  L  L  C  *  G  S  V  G  V  Q  G  C  P  F  C  S  K  K  G  S  F  *  P  L  *  H  K  E  E  A  Q  Q  H  Q  V  V  C  S  P  C  V  Y  H  G  *  L  *  *  V  D  S  *  I  F  E  L  C  E  G  Y  C  G  F  *  G  P  S  S  Q  H  L  Q  R  D  I  A  A  E  Q  D  P  K  G  Y  S  Q  E  F  G  E  E  V  C  *  A  F  L  *  N  C  *  E  Q  G  G  L  Q  *  V  L  *  G  V  L  *  K  P  Q  A  W  N  P  *  G  F  S  E  Q  G  K  V  C  *  T  A  E  V  P  L  H  *  E  W  *  *  D  D  Q  L  E  G  L  C  D  Q  N  E  G  G  P  E  *  Y  L  L  H  Y  W  *  E  Q  E  G  C  *  E  L  S  L  P  G  E  T  E  E  E  G  I  *  G  A  L  H  G  *  C  H  *  *  V  F  N  W  S  A  E  G  I  *  G  Q  K  A  C  F  C  Y  Q  G  R  P  Q  A  *  *  E  *  R  *  E  E  K  A  G  R  I  E  G  E  V :   P  W  R  S  T  Q  R  T  P  S  W  M  S  *  G  R  G  :  L  M  L  R  A  A  R  W  R  R  L  I  K  F  I  N  V  L  I  V  L  W  V  P  L  L  L  L  Y  S  L  V  F  A  L  S  H  Q  N  N  M  *  G  F  *  C  R  S  F  R  M  A  V  Q  C  *  V  I  I  L  F   </first_frame>
            <second_frame>  V  D  E  E  K  E  K  E  E  K  K  K  K  K  V  K  E  V  S  N  E  W  S  L  V  N  K  Q  K  P  I  W  M  R  K  P  E  E  I  T  K  E  E  Y  A  A  F  Y  K  S  L  T  N  D  W  E  E  H  L  A  V  K  H  F  S  V  E  G  Q  L  E  F  K  A  V  L  F  V  P  K  R  A  P  F  D  L  F  D  T  K  K  K  P  N  N  I  K  L  Y  V  R  R  V  F  I  M  D  N  C  D  E  L  I  P  E  Y  L  S  F  V  K  G  I  V  D  S  E  D  L  P  L  N  I  S  R  E  T  L  Q  Q  N  K  I  L  K  V  I  R  K  N  L  V  K  K  C  V  E  L  F  F  E  I  A  E  N  K  E  D  Y  N  K  F  Y  E  A  F  S  K  N  L  K  L  G  I  H  E  D  S  Q  N  R  A  K  F  A  E  L  L  R  Y  H  S  T  K  S  G  D  E  M  T  S  L  K  D  Y  V  T  R  M  K  E  G  Q  N  D  I  Y  Y  I  T  G  E  S  K  K  A  V  E  N  S  P  F  L  E  K  L  K  K  K  G  Y  E  V  L  Y  M  V  D  A  I  D  E  Y  S  I  G  Q  L  K  E  F  E  G  K  K  L  V  S  A  T  K  E  G  L  K  L  D  E  S  E  D  E  K  K  K  Q  E  E  L  K  E  K   : Y  H  G  D  Q  P  R  E  L  H  H  G  *  A  K  E  E  G :   *  C  *  G  Q  Q  D  G  G  G  *  L  S  S  L  M  F  *  *  F  Y  G  F  L  Y  Y  Y  F  I  P  *  F  L  L  Y  P  I  R  T  I  C  E  G  F  N  A  V  L  L  E  W  Q  F  N  V  R  L  *  F  S  F  </second_frame>
            <third_frame>   S  M  R  K  R  R  R  K  R  R  K  R  R  R  S  K  K  F  P  M  S  G  H  W  *  T  S  R  S  L  F  G  *  E  S  Q  K  R  S  Q  R  K  S  M  L  L  S  T  R  A  *  L  M  I  G  K  S  I  L  L  *  S  T  S  L  L  R  V  S  W  S  S  R  L  S  F  L  F  Q  K  G  L  L  L  T  S  L  T  Q  R  R  S  P  T  T  S  S  C  M  F  A  V  C  L  S  W  I  T  V  M  S  *  F  L  N  I  *  A  L  *  R  V  L  W  I  L  R  T  F  L  S  T  S  P  E  R  H  C  S  R  T  R  S  *  R  L  F  A  R  I  W  *  R  S  V  L  S  F  S  L  K  L  L  R  T  R  R  T  T  I  S  S  M  R  R  S  L  K  T  S  S  L  E  S  M  R  I  L  R  T  G  Q  S  L  L  N  C  *  G  T  T  P  L  R  V  V  M  R  *  P  A  *  R  T  M  *  P  E  *  R  R  A  R  M  I  F  T  T  L  L  V  R  A  R  R  L  L  R  T  L  P  S  W  R  N  *  R  R  R  D  M  R  C  F  T  W  L  M  P  L  M  S  I  Q  L  V  S  *  R  N  L  R  A  K  S  L  F  L  L  P  R  K  A  S  S  L  M  R  V  K  M  R  R  K  S  R  K  N  *  R  R  S  :  T  M  E  I  N  P  E  N  S  I  M  D  E  L  R  K  R   : A  D  A  E  G  S  K  M  E  E  V  D  *  V  H  *  C  F  D  S  F  M  G  S  F  T  T  T  L  F  P  S  F  C  F  I  P  S  E  Q  Y  V  R  V  L  M  P  F  F  *  N  G  S  S  M  L  G  Y  N  S  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34468" stop="33562"/>
                    <exon start="33367" stop="33330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDEEKEKEEKKKKKVKEVSNEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCDELIPEYLSFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKYHGDQPRELHHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="36325" e_stop="36159"/>
            <exon e_start="35163" e_stop="35022"/>
            <exon e_start="34911" e_stop="34894"/>
            <exon e_start="34149" e_stop="33562"/>
            <exon e_start="33367" e_stop="33316"/>
            <exon e_start="33114" e_stop="32930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.229" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36325" e_stop="36159" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36158" i_stop="35164" i_length="995"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35163" e_stop="35022" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.229" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35021" i_stop="34912" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34911" e_stop="34894" e_length="18"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34893" i_stop="34150" i_length="744"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34149" e_stop="33562" e_length="588"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33561" i_stop="33368" i_length="194"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="33367" e_stop="33316" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33315" i_stop="33115" i_length="201"/>
          </intron>
          <exon e_serial="6" e_score="0.951">
            <gDNA_exon_boundary e_start="33114" e_stop="32930" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36325" stop="36159"/>
              <exon start="35163" stop="35022"/>
              <exon start="34911" stop="34894"/>
              <exon start="34149" stop="33630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33991" stop="33562"/>
              <exon start="33367" stop="33316"/>
              <exon start="33114" stop="32930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCGCCTTACAGTTTTCTTCAGCTCGTTAGATCTACAAAAAAATGTCGGACGTAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAGCTTCTCAGTCTTATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAACTCATCAGCAATTCTTCCGAT : GCTCTAGACAAGATCCGCTTTGAGAGTTTAACCGACAAGAGCAAGCTAGATGGTCAACCAGAGCTCTTCATCCATATTATTCCAGACAAGGCCAATAATACTCTCACTATCATTGATAGTGGTATTGGTATGACAAAGGCTG : ATCTGGTGAATAACCTGG : ATAACTGTGATGAGTTGATTCCTGAATATTTGAGCTTTGTGAAGGGTATTGTGGATTCTGAGGACCTTCCTCTCAACATCTCCAGAGAGACATTGCAGCAGAACAAGATCCTAAAGGTTATTCGCAAGAATTTGGTGAAGAAGTGTGTTGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAGGACTACAATAAGTTCTATGAGGCGTTCTCTAAAAACCTCAAGCTTGGAATCCATGAGGATTCTCAGAACAGGGCAAAGTTTGCTGAACTGCTGAGGTACCACTCCACTAAGAGTGGTGATGAGATGACCAGCTTGAAGGACTATGTGACCAGAATGAAGGAGGGCCAGAATGATATTTACTACATTACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCCTTCCTGGAGAAACTGAAGAAGAAGGGATATGAGGTGCTTTACATGGTTGATGCCATTGATGAGTATTCAATTGGTCAGCTGAAGGAATTTGAGGGCAAAAAGCTTGTTTCTGCTACCAAGGAAGGCCTCAAGCTTGATGAGAGTGAAGATGAGAAGAAAAAGCAGGAAGAATTGAAGGAGAAGT : ACCATGGAGATCAACCCAGAGAACTCCATCATGGATGAGCTAAGGAAGAGGG : CTGATGCTGAGGGCAGCAAGATGGAGGAGGTTGATTAAGTTCATTAATGTTTTGATAGTTTTATGGGTTCCTTTACTACTACTTTATTCCCTAGTTTTTGCTTTATCCCATCAGAACAATATGTGAGGGTTTTAATGCCGTTCTTTTAGAATGGCAGTTCAATGTTAGGTTATAATTCTCTTTTT</gDNA_template>
            <first_frame> I  S  P  Y  S  F  L  Q  L  V  R  S  T  K  K  C  R  T  *  R  R  L  L  S  R  L  R  S  I  S  F  S  V  L  S  S  T  L  S  T  A  T  R  R  S  F  S  V  N  S  S  A  I  L  P  M :   L  *  T  R  S  A  L  R  V  *  P  T  R  A  S  *  M  V  N  Q  S  S  S  S  I  L  F  Q  T  R  P  I  I  L  S  L  S  L  I  V  V  L  V  *  Q  R  L  :  I  W  *  I  T  W  :  I  T  V  M  S  *  F  L  N  I  *  A  L  *  R  V  L  W  I  L  R  T  F  L  S  T  S  P  E  R  H  C  S  R  T  R  S  *  R  L  F  A  R  I  W  *  R  S  V  L  S  F  S  L  K  L  L  R  T  R  R  T  T  I  S  S  M  R  R  S  L  K  T  S  S  L  E  S  M  R  I  L  R  T  G  Q  S  L  L  N  C  *  G  T  T  P  L  R  V  V  M  R  *  P  A  *  R  T  M  *  P  E  *  R  R  A  R  M  I  F  T  T  L  L  V  R  A  R  R  L  L  R  T  L  P  S  W  R  N  *  R  R  R  D  M  R  C  F  T  W  L  M  P  L  M  S  I  Q  L  V  S  *  R  N  L  R  A  K  S  L  F  L  L  P  R  K  A  S  S  L  M  R  V  K  M  R  R  K  S  R  K  N  *  R  R  S  :  T  M  E  I  N  P  E  N  S  I  M  D  E  L  R  K  R   : A  D  A  E  G  S  K  M  E  E  V  D  *  V  H  *  C  F  D  S  F  M  G  S  F  T  T  T  L  F  P  S  F  C  F  I  P  S  E  Q  Y  V  R  V  L  M  P  F  F  *  N  G  S  S  M  L  G  Y  N  S  L  F </first_frame>
            <second_frame>  F  R  L  T  V  F  F  S  S  L  D  L  Q  K  N  V  G  R  R  D  V  C  F  P  G  *  D  Q  S  A  S  Q  S  Y  H  Q  H  F  L  Q  Q  Q  G  D  L  S  P  *  T  H  Q  Q  F  F  R   : C  S  R  Q  D  P  L  *  E  F  N  R  Q  E  Q  A  R  W  S  T  R  A  L  H  P  Y  Y  S  R  Q  G  Q  *  Y  S  H  Y  H  *  *  W  Y  W  Y  D  K  G  * :   S  G  E  *  P  G :   *  L  *  *  V  D  S  *  I  F  E  L  C  E  G  Y  C  G  F  *  G  P  S  S  Q  H  L  Q  R  D  I  A  A  E  Q  D  P  K  G  Y  S  Q  E  F  G  E  E  V  C  *  A  F  L  *  N  C  *  E  Q  G  G  L  Q  *  V  L  *  G  V  L  *  K  P  Q  A  W  N  P  *  G  F  S  E  Q  G  K  V  C  *  T  A  E  V  P  L  H  *  E  W  *  *  D  D  Q  L  E  G  L  C  D  Q  N  E  G  G  P  E  *  Y  L  L  H  Y  W  *  E  Q  E  G  C  *  E  L  S  L  P  G  E  T  E  E  E  G  I  *  G  A  L  H  G  *  C  H  *  *  V  F  N  W  S  A  E  G  I  *  G  Q  K  A  C  F  C  Y  Q  G  R  P  Q  A  *  *  E  *  R  *  E  E  K  A  G  R  I  E  G  E  V :   P  W  R  S  T  Q  R  T  P  S  W  M  S  *  G  R  G  :  L  M  L  R  A  A  R  W  R  R  L  I  K  F  I  N  V  L  I  V  L  W  V  P  L  L  L  L  Y  S  L  V  F  A  L  S  H  Q  N  N  M  *  G  F  *  C  R  S  F  R  M  A  V  Q  C  *  V  I  I  L  F   </second_frame>
            <third_frame>   F  A  L  Q  F  S  S  A  R  *  I  Y  K  K  M  S  D  V  E  T  F  A  F  Q  A  E  I  N  Q  L  L  S  L  I  I  N  T  F  Y  S  N  K  E  I  F  L  R  E  L  I  S  N  S  S  D  :  A  L  D  K  I  R  F  E  S  L  T  D  K  S  K  L  D  G  Q  P  E  L  F  I  H  I  I  P  D  K  A  N  N  T  L  T  I  I  D  S  G  I  G  M  T  K  A   : D  L  V  N  N  L   : D  N  C  D  E  L  I  P  E  Y  L  S  F  V  K  G  I  V  D  S  E  D  L  P  L  N  I  S  R  E  T  L  Q  Q  N  K  I  L  K  V  I  R  K  N  L  V  K  K  C  V  E  L  F  F  E  I  A  E  N  K  E  D  Y  N  K  F  Y  E  A  F  S  K  N  L  K  L  G  I  H  E  D  S  Q  N  R  A  K  F  A  E  L  L  R  Y  H  S  T  K  S  G  D  E  M  T  S  L  K  D  Y  V  T  R  M  K  E  G  Q  N  D  I  Y  Y  I  T  G  E  S  K  K  A  V  E  N  S  P  F  L  E  K  L  K  K  K  G  Y  E  V  L  Y  M  V  D  A  I  D  E  Y  S  I  G  Q  L  K  E  F  E  G  K  K  L  V  S  A  T  K  E  G  L  K  L  D  E  S  E  D  E  K  K  K  Q  E  E  L  K  E  K   : Y  H  G  D  Q  P  R  E  L  H  H  G  *  A  K  E  E  G :   *  C  *  G  Q  Q  D  G  G  G  *  L  S  S  L  M  F  *  *  F  Y  G  F  L  Y  Y  Y  F  I  P  *  F  L  L  Y  P  I  R  T  I  C  E  G  F  N  A  V  L  L  E  W  Q  F  N  V  R  L  *  F  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36293" stop="36159"/>
                    <exon start="35163" stop="35022"/>
                    <exon start="34911" stop="34894"/>
                    <exon start="34149" stop="33562"/>
                    <exon start="33367" stop="33330"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKKMSDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLDNCDELIPEYLSFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKYHGDQPRELHHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="33137" PGL_stop="34068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33137" e_stop="33493"/>
            <exon e_start="33530" e_stop="34068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.656" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="33137" e_stop="33493" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.656" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33494" i_stop="33529" i_length="36"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="33530" e_stop="34068" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33137" stop="33493"/>
              <exon start="33530" stop="34068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGTCAGCATCAGCATCTCCGCTTTCCTCATCAATGCTCAAACCGAGTTTCAACATCCTGTGAATTCTGTTGCCAAAGGTGTTTGGCTCCTCGAGGCTGAAACCTGAGGTGAGAAGGGCAGTCTCAAAAAGCAAGAGAACCAAGTCCTTCACAGACTTGTCATTCTTGTCTGCATCAGCCCTCTTCCTTAGCTCATCCATGATGGAGTTCTCTGGGTTGATCTCCATGGTCTTCTTGCTAGACATGTATCCAGCCATGCTGGAGTCCCTAAGTGCCTGTGCCTTCATAATTCTCTCCATGTTAGCAGTCCAGCCATACTCACCAGTGACCAAACAGCAGGGAGAGTCAACAACACG : CACATCCTTCATCACCTTACACAGTCCCTCAAACTTCTCCTTCAATTCTTCCTGCTTTTTCTTCTCATCTTCACTCTCATCAAGCTTGAGGCCTTCCTTGGTAGCAGAAACAAGCTTTTTGCCCTCAAATTCCTTCAGCTGACCAATTGAATACTCATCAATGGCATCAACCATGTAAAGCACCTCATATCCCTTCTTCTTCAGTTTCTCCAGGAAGGGAGAGTTCTCAACAGCCTTCTTGCTCTCACCAGTAATGTAGTAAATATCATTCTGGCCCTCCTTCATTCTGGTCACATAGTCCTTCAAGCTGGTCATCTCATCACCACTCTTAGTGGAGTGGTACCTCAGCAGTTCAGCAAACTTTGCCCTGTTCTGAGAATCCTCATGGATTCCAAGCTTGAGGTTTTTAGAGAACGCCTCATAGAACTTATTGTAGTCCTCCTTGTTCTCAGCAATTTCAAAGAAAAGCTCAACACACTTCTTCACCAAATTCTTGCGAATAACCTTTAGGATCTTGTTCTGCTGCAATGTCTCTCTGG</gDNA_template>
            <first_frame> H  V  S  I  S  I  S  A  F  L  I  N  A  Q  T  E  F  Q  H  P  V  N  S  V  A  K  G  V  W  L  L  E  A  E  T  *  G  E  K  G  S  L  K  K  Q  E  N  Q  V  L  H  R  L  V  I  L  V  C  I  S  P  L  P  *  L  I  H  D  G  V  L  W  V  D  L  H  G  L  L  A  R  H  V  S  S  H  A  G  V  P  K  C  L  C  L  H  N  S  L  H  V  S  S  P  A  I  L  T  S  D  Q  T  A  G  R  V  N  N  T  :  H  I  L  H  H  L  T  Q  S  L  K  L  L  L  Q  F  F  L  L  F  L  L  I  F  T  L  I  K  L  E  A  F  L  G  S  R  N  K  L  F  A  L  K  F  L  Q  L  T  N  *  I  L  I  N  G  I  N  H  V  K  H  L  I  S  L  L  L  Q  F  L  Q  E  G  R  V  L  N  S  L  L  A  L  T  S  N  V  V  N  I  I  L  A  L  L  H  S  G  H  I  V  L  Q  A  G  H  L  I  T  T  L  S  G  V  V  P  Q  Q  F  S  K  L  C  P  V  L  R  I  L  M  D  S  K  L  E  V  F  R  E  R  L  I  E  L  I  V  V  L  L  V  L  S  N  F  K  E  K  L  N  T  L  L  H  Q  I  L  A  N  N  L  *  D  L  V  L  L  Q  C  L  S   </first_frame>
            <second_frame>  M  S  A  S  A  S  P  L  S  S  S  M  L  K  P  S  F  N  I  L  *  I  L  L  P  K  V  F  G  S  S  R  L  K  P  E  V  R  R  A  V  S  K  S  K  R  T  K  S  F  T  D  L  S  F  L  S  A  S  A  L  F  L  S  S  S  M  M  E  F  S  G  L  I  S  M  V  F  L  L  D  M  Y  P  A  M  L  E  S  L  S  A  C  A  F  I  I  L  S  M  L  A  V  Q  P  Y  S  P  V  T  K  Q  Q  G  E  S  T  T  R :   T  S  F  I  T  L  H  S  P  S  N  F  S  F  N  S  S  C  F  F  F  S  S  S  L  S  S  S  L  R  P  S  L  V  A  E  T  S  F  L  P  S  N  S  F  S  *  P  I  E  Y  S  S  M  A  S  T  M  *  S  T  S  Y  P  F  F  F  S  F  S  R  K  G  E  F  S  T  A  F  L  L  S  P  V  M  *  *  I  S  F  W  P  S  F  I  L  V  T  *  S  F  K  L  V  I  S  S  P  L  L  V  E  W  Y  L  S  S  S  A  N  F  A  L  F  *  E  S  S  W  I  P  S  L  R  F  L  E  N  A  S  *  N  L  L  *  S  S  L  F  S  A  I  S  K  K  S  S  T  H  F  F  T  K  F  L  R  I  T  F  R  I  L  F  C  C  N  V  S  L  </second_frame>
            <third_frame>   C  Q  H  Q  H  L  R  F  P  H  Q  C  S  N  R  V  S  T  S  C  E  F  C  C  Q  R  C  L  A  P  R  G  *  N  L  R  *  E  G  Q  S  Q  K  A  R  E  P  S  P  S  Q  T  C  H  S  C  L  H  Q  P  S  S  L  A  H  P  *  W  S  S  L  G  *  S  P  W  S  S  C  *  T  C  I  Q  P  C  W  S  P  *  V  P  V  P  S  *  F  S  P  C  *  Q  S  S  H  T  H  Q  *  P  N  S  R  E  S  Q  Q  H   : A  H  P  S  S  P  Y  T  V  P  Q  T  S  P  S  I  L  P  A  F  S  S  H  L  H  S  H  Q  A  *  G  L  P  W  *  Q  K  Q  A  F  C  P  Q  I  P  S  A  D  Q  L  N  T  H  Q  W  H  Q  P  C  K  A  P  H  I  P  S  S  S  V  S  P  G  R  E  S  S  Q  Q  P  S  C  S  H  Q  *  C  S  K  Y  H  S  G  P  P  S  F  W  S  H  S  P  S  S  W  S  S  H  H  H  S  *  W  S  G  T  S  A  V  Q  Q  T  L  P  C  S  E  N  P  H  G  F  Q  A  *  G  F  *  R  T  P  H  R  T  Y  C  S  P  P  C  S  Q  Q  F  Q  R  K  A  Q  H  T  S  S  P  N  S  C  E  *  P  L  G  S  C  S  A  A  M  S  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33201" stop="33493"/>
                    <exon start="33530" stop="33671"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLPKVFGSSRLKPEVRRAVSKSKRTKSFTDLSFLSASALFLSSSMMEFSGLISMVFLLDMYPAMLESLSACAFIILSMLAVQPYSPVTKQQGESTTRTSFITLHSPSNFSFNSSCFFFSSSLSSSLRPSLVAETSFLPSNSFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33680" stop="34039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILINGINHVKHLISLLLQFLQEGRVLNSLLALTSNVVNIILALLHSGHIVLQAGHLITTLSGVVPQQFSKLCPVLRILMDSKLEVFRERLIELIVVLLVLSNFKEKLNTLLHQILANNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="44747" PGL_stop="48408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44747" e_stop="45156"/>
            <exon e_start="47534" e_stop="47801"/>
            <exon e_start="47895" e_stop="47999"/>
            <exon e_start="48175" e_stop="48408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44747" e_stop="45156" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45157" i_stop="47533" i_length="2377"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47534" e_stop="47801" e_length="268"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.817">
            <gDNA_intron_boundary i_start="47802" i_stop="47894" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47895" e_stop="47999" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48000" i_stop="48174" i_length="175"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48175" e_stop="48408" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44747" stop="45156"/>
              <exon start="47534" stop="47801"/>
              <exon start="47895" stop="47999"/>
              <exon start="48175" stop="48408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTACAATAAGTAAGGAACTAGAAACGGAGATTATTGAAGCTGTAGCGGAAAATGAGTTGCCGGTAGGTGGGAAAGCAACAAGCAATTCTGGTCACCGGCGGGGTCTCCGTTTGGATCCGATCCAAATTCTCCATATTCCTCAGTTACTTTAACACTGCGACTGTAGTCGACTCGCCGGACATAGATACACAATGCAGAAGTGGTTTTCAGCGGGCAGCGGCGGCGGAGATGATCGTTATGTTGAGCAACAACAAGCTTCTTCTTCAACTCCTTCTTTGCTGGCTGATTGGAATTCATACGCATCAGCAAAATCATCGGATGAGAGCTCCAGCACTGCGTTCATAGGCAGCTTCGATCTCGAATCCGCTGTTCGTTCCGCTAACGATACCGTTTCTGGCACTTTTAATGT : GGTTTCTAAAGGAGTGAGAGACATTCCAGGGAACTTGCAGTCCGCCACTAGCAATATTCCTTCTGGGAAAGCCCTCATGTATTTTGGTCTATTCATGGCGACTGGAGTCTTCTTCATTTTCATGGCATTCACTTTATTCCTTCCAGTGATAGTATTGGTGCCTCAGAAATTTGCCATTTGCTTTACTCTTGGATGTTCGTTTATCATTGGGTCATTCTTCGCACTCAAGGGCCCGAAGACTCAGTTTGCTCATATGTTCTCAATGGAG : AGACTCCCTTTTACGCTAGGTTTCATGGGTAGCATGATTGGCACTCTCTACGTTTCCATGGCACTCCATAGCTATATCCTTTCGGTGCTCTTCTCTGTGATTCAG : GTTCTGGCATTAGCATACTACGCAATATCTTACTTTCCCGGTGGCTCTGCTGGCTTGAAATTTCTGTCGTCTTCTATGATTTCTTCAGTGTTGAAATGCTTTGGCAGGTGAAGGCTTGTAACGCGACTGTGTCAACTTTCTGCAACATTATTGTTCATTAGTATACATTCTGTAGTTGTAGTCTTGTATTCTGAAACTATGGTGTACAATTTTGACAAAATTTAGTTAAGTTCT</gDNA_template>
            <first_frame> I  T  I  S  K  E  L  E  T  E  I  I  E  A  V  A  E  N  E  L  P  V  G  G  K  A  T  S  N  S  G  H  R  R  G  L  R  L  D  P  I  Q  I  L  H  I  P  Q  L  L  *  H  C  D  C  S  R  L  A  G  H  R  Y  T  M  Q  K  W  F  S  A  G  S  G  G  G  D  D  R  Y  V  E  Q  Q  Q  A  S  S  S  T  P  S  L  L  A  D  W  N  S  Y  A  S  A  K  S  S  D  E  S  S  S  T  A  F  I  G  S  F  D  L  E  S  A  V  R  S  A  N  D  T  V  S  G  T  F  N  V :   V  S  K  G  V  R  D  I  P  G  N  L  Q  S  A  T  S  N  I  P  S  G  K  A  L  M  Y  F  G  L  F  M  A  T  G  V  F  F  I  F  M  A  F  T  L  F  L  P  V  I  V  L  V  P  Q  K  F  A  I  C  F  T  L  G  C  S  F  I  I  G  S  F  F  A  L  K  G  P  K  T  Q  F  A  H  M  F  S  M  E  :  R  L  P  F  T  L  G  F  M  G  S  M  I  G  T  L  Y  V  S  M  A  L  H  S  Y  I  L  S  V  L  F  S  V  I  Q  :  V  L  A  L  A  Y  Y  A  I  S  Y  F  P  G  G  S  A  G  L  K  F  L  S  S  S  M  I  S  S  V  L  K  C  F  G  R  *  R  L  V  T  R  L  C  Q  L  S  A  T  L  L  F  I  S  I  H  S  V  V  V  V  L  Y  S  E  T  M  V  Y  N  F  D  K  I  *  L  S  S </first_frame>
            <second_frame>  L  Q  *  V  R  N  *  K  R  R  L  L  K  L  *  R  K  M  S  C  R  *  V  G  K  Q  Q  A  I  L  V  T  G  G  V  S  V  W  I  R  S  K  F  S  I  F  L  S  Y  F  N  T  A  T  V  V  D  S  P  D  I  D  T  Q  C  R  S  G  F  Q  R  A  A  A  A  E  M  I  V  M  L  S  N  N  K  L  L  L  Q  L  L  L  C  W  L  I  G  I  H  T  H  Q  Q  N  H  R  M  R  A  P  A  L  R  S  *  A  A  S  I  S  N  P  L  F  V  P  L  T  I  P  F  L  A  L  L  M   : W  F  L  K  E  *  E  T  F  Q  G  T  C  S  P  P  L  A  I  F  L  L  G  K  P  S  C  I  L  V  Y  S  W  R  L  E  S  S  S  F  S  W  H  S  L  Y  S  F  Q  *  *  Y  W  C  L  R  N  L  P  F  A  L  L  L  D  V  R  L  S  L  G  H  S  S  H  S  R  A  R  R  L  S  L  L  I  C  S  Q  W  R :   D  S  L  L  R  *  V  S  W  V  A  *  L  A  L  S  T  F  P  W  H  S  I  A  I  S  F  R  C  S  S  L  *  F  R :   F  W  H  *  H  T  T  Q  Y  L  T  F  P  V  A  L  L  A  *  N  F  C  R  L  L  *  F  L  Q  C  *  N  A  L  A  G  E  G  L  *  R  D  C  V  N  F  L  Q  H  Y  C  S  L  V  Y  I  L  *  L  *  S  C  I  L  K  L  W  C  T  I  L  T  K  F  S  *  V   </second_frame>
            <third_frame>   Y  N  K  *  G  T  R  N  G  D  Y  *  S  C  S  G  K  *  V  A  G  R  W  E  S  N  K  Q  F  W  S  P  A  G  S  P  F  G  S  D  P  N  S  P  Y  S  S  V  T  L  T  L  R  L  *  S  T  R  R  T  *  I  H  N  A  E  V  V  F  S  G  Q  R  R  R  R  *  S  L  C  *  A  T  T  S  F  F  F  N  S  F  F  A  G  *  L  E  F  I  R  I  S  K  I  I  G  *  E  L  Q  H  C  V  H  R  Q  L  R  S  R  I  R  C  S  F  R  *  R  Y  R  F  W  H  F  *  C  :  G  F  *  R  S  E  R  H  S  R  E  L  A  V  R  H  *  Q  Y  S  F  W  E  S  P  H  V  F  W  S  I  H  G  D  W  S  L  L  H  F  H  G  I  H  F  I  P  S  S  D  S  I  G  A  S  E  I  C  H  L  L  Y  S  W  M  F  V  Y  H  W  V  I  L  R  T  Q  G  P  E  D  S  V  C  S  Y  V  L  N  G   : E  T  P  F  Y  A  R  F  H  G  *  H  D  W  H  S  L  R  F  H  G  T  P  *  L  Y  P  F  G  A  L  L  C  D  S   : G  S  G  I  S  I  L  R  N  I  L  L  S  R  W  L  C  W  L  E  I  S  V  V  F  Y  D  F  F  S  V  E  M  L  W  Q  V  K  A  C  N  A  T  V  S  T  F  C  N  I  I  V  H  *  Y  T  F  C  S  C  S  L  V  F  *  N  Y  G  V  Q  F  *  Q  N  L  V  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44900" stop="45156"/>
                    <exon start="47534" stop="47801"/>
                    <exon start="47895" stop="47999"/>
                    <exon start="48175" stop="48285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCDCSRLAGHRYTMQKWFSAGSGGGDDRYVEQQQASSSTPSLLADWNSYASAKSSDESSSTAFIGSFDLESAVRSANDTVSGTFNVVSKGVRDIPGNLQSATSNIPSGKALMYFGLFMATGVFFIFMAFTLFLPVIVLVPQKFAICFTLGCSFIIGSFFALKGPKTQFAHMFSMERLPFTLGFMGSMIGTLYVSMALHSYILSVLFSVIQVLALAYYAISYFPGGSAGLKFLSSSMISSVLKCFGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="56844" PGL_stop="57717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56844" e_stop="57717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="56844" e_stop="57717" e_length="874"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="57717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATTTAGACGTTCTCACGAACCTTCAAAACCTTGTTTCACTCAACATATCATTCAATGACTTCTATGGAAAACTTCCCAATTCTCCATTCTTTCATAAGCTTCCTTTGAGTGATCTTACTGGAAACCAAGCTCTATACATTTCTGGTGGGGACGTGATCCAAACGGGGCCTGCTGGACATGCCAAAACCACCATGAAGCTTGCTATGTCAATCCTAGTCAGTATAAGTGCTGTGCTGGTTCTGCTAGCCATCTACACGTTGATCAGGATGAGAATGGCCGCAAAGTATGGACCAGAAGTTGATACATGGGAAATGACTCTTTACCAGAAGTTGGACTTTTCAATAGATGACATTGTTCATAATCTAACGTCAGCTAATGTCATTGGCACTGGGAGCTCTGGGGTTGTATACAGAATAATGACCGAAAATGGGGTGACTTTAGCAGTCAAGAAAATGTGGTCATCAGAGAAATCAGGAGCATTTGGTTCAGAAATTCAAACACTTGGTTCAATCCGGCACAAGAACATCGTACGCCTTCTCGGCTGGGCTTCAAACCAGAACATGAAGCTTCTGTTCTATGACTACCTTCCCAATGGGAGTTTGAGCTCATTACTCCATGGTGTTGGCAAAGGAGCAGCAGAATGGGAAAACAGATTTGATGTAGTCCTTGGAGTAGCCCATGCACTTGCATACTTGCATCATGACTGTGTACCCCCTATAATGCATGGAGATGTCAAAGCAATGAATGTATTGTTAGGCTCTAGAATGGAGCCTTACCTGGCCGATTTCGGGTTGGCAAGGATTGTCAACACTGATGTTGATGCAGACTTGTTAAAGGAGAGTCAAAGGCCTCATCTTGCTGGTTCTTATGG</gDNA_template>
            <first_frame> G  I  *  T  F  S  R  T  F  K  T  L  F  H  S  T  Y  H  S  M  T  S  M  E  N  F  P  I  L  H  S  F  I  S  F  L  *  V  I  L  L  E  T  K  L  Y  T  F  L  V  G  T  *  S  K  R  G  L  L  D  M  P  K  P  P  *  S  L  L  C  Q  S  *  S  V  *  V  L  C  W  F  C  *  P  S  T  R  *  S  G  *  E  W  P  Q  S  M  D  Q  K  L  I  H  G  K  *  L  F  T  R  S  W  T  F  Q  *  M  T  L  F  I  I  *  R  Q  L  M  S  L  A  L  G  A  L  G  L  Y  T  E  *  *  P  K  M  G  *  L  *  Q  S  R  K  C  G  H  Q  R  N  Q  E  H  L  V  Q  K  F  K  H  L  V  Q  S  G  T  R  T  S  Y  A  F  S  A  G  L  Q  T  R  T  *  S  F  C  S  M  T  T  F  P  M  G  V  *  A  H  Y  S  M  V  L  A  K  E  Q  Q  N  G  K  T  D  L  M  *  S  L  E  *  P  M  H  L  H  T  C  I  M  T  V  Y  P  L  *  C  M  E  M  S  K  Q  *  M  Y  C  *  A  L  E  W  S  L  T  W  P  I  S  G  W  Q  G  L  S  T  L  M  L  M  Q  T  C  *  R  R  V  K  G  L  I  L  L  V  L  M  </first_frame>
            <second_frame>  E  F  R  R  S  H  E  P  S  K  P  C  F  T  Q  H  I  I  Q  *  L  L  W  K  T  S  Q  F  S  I  L  S  *  A  S  F  E  *  S  Y  W  K  P  S  S  I  H  F  W  W  G  R  D  P  N  G  A  C  W  T  C  Q  N  H  H  E  A  C  Y  V  N  P  S  Q  Y  K  C  C  A  G  S  A  S  H  L  H  V  D  Q  D  E  N  G  R  K  V  W  T  R  S  *  Y  M  G  N  D  S  L  P  E  V  G  L  F  N  R  *  H  C  S  *  S  N  V  S  *  C  H  W  H  W  E  L  W  G  C  I  Q  N  N  D  R  K  W  G  D  F  S  S  Q  E  N  V  V  I  R  E  I  R  S  I  W  F  R  N  S  N  T  W  F  N  P  A  Q  E  H  R  T  P  S  R  L  G  F  K  P  E  H  E  A  S  V  L  *  L  P  S  Q  W  E  F  E  L  I  T  P  W  C  W  Q  R  S  S  R  M  G  K  Q  I  *  C  S  P  W  S  S  P  C  T  C  I  L  A  S  *  L  C  T  P  Y  N  A  W  R  C  Q  S  N  E  C  I  V  R  L  *  N  G  A  L  P  G  R  F  R  V  G  K  D  C  Q  H  *  C  *  C  R  L  V  K  G  E  S  K  A  S  S  C  W  F  L  W </second_frame>
            <third_frame>   N  L  D  V  L  T  N  L  Q  N  L  V  S  L  N  I  S  F  N  D  F  Y  G  K  L  P  N  S  P  F  F  H  K  L  P  L  S  D  L  T  G  N  Q  A  L  Y  I  S  G  G  D  V  I  Q  T  G  P  A  G  H  A  K  T  T  M  K  L  A  M  S  I  L  V  S  I  S  A  V  L  V  L  L  A  I  Y  T  L  I  R  M  R  M  A  A  K  Y  G  P  E  V  D  T  W  E  M  T  L  Y  Q  K  L  D  F  S  I  D  D  I  V  H  N  L  T  S  A  N  V  I  G  T  G  S  S  G  V  V  Y  R  I  M  T  E  N  G  V  T  L  A  V  K  K  M  W  S  S  E  K  S  G  A  F  G  S  E  I  Q  T  L  G  S  I  R  H  K  N  I  V  R  L  L  G  W  A  S  N  Q  N  M  K  L  L  F  Y  D  Y  L  P  N  G  S  L  S  S  L  L  H  G  V  G  K  G  A  A  E  W  E  N  R  F  D  V  V  L  G  V  A  H  A  L  A  Y  L  H  H  D  C  V  P  P  I  M  H  G  D  V  K  A  M  N  V  L  L  G  S  R  M  E  P  Y  L  A  D  F  G  L  A  R  I  V  N  T  D  V  D  A  D  L  L  K  E  S  Q  R  P  H  L  A  G  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56846" stop="57715"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLDVLTNLQNLVSLNISFNDFYGKLPNSPFFHKLPLSDLTGNQALYISGGDVIQTGPAGHAKTTMKLAMSILVSISAVLVLLAIYTLIRMRMAAKYGPEVDTWEMTLYQKLDFSIDDIVHNLTSANVIGTGSSGVVYRIMTENGVTLAVKKMWSSEKSGAFGSEIQTLGSIRHKNIVRLLGWASNQNMKLLFYDYLPNGSLSSLLHGVGKGAAEWENRFDVVLGVAHALAYLHHDCVPPIMHGDVKAMNVLLGSRMEPYLADFGLARIVNTDVDADLLKESQRPHLAGSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="62949" PGL_stop="59499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62949" e_stop="62907"/>
            <exon e_start="61801" e_stop="61515"/>
            <exon e_start="61426" e_stop="61318"/>
            <exon e_start="60987" e_stop="60895"/>
            <exon e_start="60595" e_stop="60508"/>
            <exon e_start="60097" e_stop="59499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.694" acc_prob="0.742" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62949" e_stop="62907" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62906" i_stop="61802" i_length="1105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61801" e_stop="61515" e_length="287"/>
          </exon>
          <intron i_serial="2" don_prob="0.694" acc_prob="0.742">
            <gDNA_intron_boundary i_start="61514" i_stop="61427" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61426" e_stop="61318" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.962">
            <gDNA_intron_boundary i_start="61317" i_stop="60988" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60987" e_stop="60895" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="60894" i_stop="60596" i_length="299"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60595" e_stop="60508" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60507" i_stop="60098" i_length="410"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60097" e_stop="59499" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62949" stop="62907"/>
              <exon start="61801" stop="61515"/>
              <exon start="61426" stop="61318"/>
              <exon start="60987" stop="60895"/>
              <exon start="60595" stop="60508"/>
              <exon start="60097" stop="59988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60051" stop="59499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTCAATCCTGTTTCATTCTAGAGCCATTATCATCCCCTG : GGTGCAGAAGTTCAGTGCCATAAGCTGCTCCCGAGGCAGAGATTATAGCGCTTTTCCAGTCAGGCACATCCCCAAGAGATCTAATGAAAGCCAAGAGTCAGAATCTGCTTTGCCAAAGAAGCACTTTTTGGACATCGAAAAAAACAGCTTCTTAAACAGGAAAGTTCAGGAAACTGAATTTTCTGTCGGTGGTGGAGGGTCGAAGTACGGAGATATACCTTTTCATTCCAAGTCTCGAAATCATAAGCAAAAGCTTATCACCAGCTTAGATGATGAGGTTGAATGGG : GGAAGGAAGATGAAGTTGATGAAGATTTTGTACTTGAACATGGTATAGCTGAAACTGATAAAGCTAGGCAAGATGCTGAGACAATCGCAGTTCGATTACTTGCTTCAAG : AGCACTTACGGCTGTAGAACTGCAGAAGAAGCTCATGGGAAGAAAGTTTACAGTCAATGTTGTTAATGCTGTAATAACAGATTTCCATACCAG : GGGTTTAATCAATGACGGTCTGTATGCTGAAATGTTTTCTCGGTCCAGATGGTCTTCCTCAAGTTGGGGTCCACGACGAATCAAGCAA : GCCTTGATCAAGAAGGGTGTAAGTGAAGTGGATGCAGACAATGCCATAAAATTGGTCTTCAAGAATGACGAAGCTGGTGAAGAGCAAGAATCAAGAGAATCAGGACATGCTATATCAAAACCGTCTCTGGATCAATTATATGTCCAGGCATCTAAACAGTGGCTTAAAGGGCAAGATATGCCTAGAGAAAAACGTAAAGCAAGGATTATTCGTTGGCTTCAGTATCGTGGCTTTGATTGGAGCGTGGTTAGTTTCATACTTAAGAAGTTAGAATCCAGCCATCCTCAATAGAGTCCCTTTACTCAGCGAAAGGGATTATAATGATCTGTTTGATGTTGCCTTAACTCGATGAGGTAGACGAGCTCTTCCTACTGTAAAATGGCCCTTAGTGGAAGTACAAGGAACTGTGTCAATTATTCGGTCTATTTTTGCCATCTCAAAAATAGTTTTCAAGTGTTAAGATCAATACAGAAGGCAAGAAGTCAAGAGCCCTAAAGTCTTTTTGTATCAGGAAGTGAGCAGTTTCACTGGAAGTAAATTGTACTGTATTTTGCCACATTAACCAGATTGTAAATAAGAATGTTCCCATTTTTAACTTT</gDNA_template>
            <first_frame> K  L  Q  S  C  F  I  L  E  P  L  S  S  P   : G  C  R  S  S  V  P  *  A  A  P  E  A  E  I  I  A  L  F  Q  S  G  T  S  P  R  D  L  M  K  A  K  S  Q  N  L  L  C  Q  R  S  T  F  W  T  S  K  K  T  A  S  *  T  G  K  F  R  K  L  N  F  L  S  V  V  E  G  R  S  T  E  I  Y  L  F  I  P  S  L  E  I  I  S  K  S  L  S  P  A  *  M  M  R  L  N  G  :  G  R  K  M  K  L  M  K  I  L  Y  L  N  M  V  *  L  K  L  I  K  L  G  K  M  L  R  Q  S  Q  F  D  Y  L  L  Q   : E  H  L  R  L  *  N  C  R  R  S  S  W  E  E  S  L  Q  S  M  L  L  M  L  *  *  Q  I  S  I  P   : G  V  *  S  M  T  V  C  M  L  K  C  F  L  G  P  D  G  L  P  Q  V  G  V  H  D  E  S  S  K :   P  *  S  R  R  V  *  V  K  W  M  Q  T  M  P  *  N  W  S  S  R  M  T  K  L  V  K  S  K  N  Q  E  N  Q  D  M  L  Y  Q  N  R  L  W  I  N  Y  M  S  R  H  L  N  S  G  L  K  G  K  I  C  L  E  K  N  V  K  Q  G  L  F  V  G  F  S  I  V  A  L  I  G  A  W  L  V  S  Y  L  R  S  *  N  P  A  I  L  N  R  V  P  L  L  S  E  R  D  Y  N  D  L  F  D  V  A  L  T  R  *  G  R  R  A  L  P  T  V  K  W  P  L  V  E  V  Q  G  T  V  S  I  I  R  S  I  F  A  I  S  K  I  V  F  K  C  *  D  Q  Y  R  R  Q  E  V  K  S  P  K  V  F  L  Y  Q  E  V  S  S  F  T  G  S  K  L  Y  C  I  L  P  H  *  P  D  C  K  *  E  C  S  H  F  *  L  </first_frame>
            <second_frame>  S  F  N  P  V  S  F  *  S  H  Y  H  P  L  :  G  A  E  V  Q  C  H  K  L  L  P  R  Q  R  L  *  R  F  S  S  Q  A  H  P  Q  E  I  *  *  K  P  R  V  R  I  C  F  A  K  E  A  L  F  G  H  R  K  K  Q  L  L  K  Q  E  S  S  G  N  *  I  F  C  R  W  W  R  V  E  V  R  R  Y  T  F  S  F  Q  V  S  K  S  *  A  K  A  Y  H  Q  L  R  *  *  G  *  M  G :   E  G  R  *  S  *  *  R  F  C  T  *  T  W  Y  S  *  N  *  *  S  *  A  R  C  *  D  N  R  S  S  I  T  C  F  K  :  S  T  Y  G  C  R  T  A  E  E  A  H  G  K  K  V  Y  S  Q  C  C  *  C  C  N  N  R  F  P  Y  Q  :  G  F  N  Q  *  R  S  V  C  *  N  V  F  S  V  Q  M  V  F  L  K  L  G  S  T  T  N  Q  A   : S  L  D  Q  E  G  C  K  *  S  G  C  R  Q  C  H  K  I  G  L  Q  E  *  R  S  W  *  R  A  R  I  K  R  I  R  T  C  Y  I  K  T  V  S  G  S  I  I  C  P  G  I  *  T  V  A  *  R  A  R  Y  A  *  R  K  T  *  S  K  D  Y  S  L  A  S  V  S  W  L  *  L  E  R  G  *  F  H  T  *  E  V  R  I  Q  P  S  S  I  E  S  L  Y  S  A  K  G  I  I  M  I  C  L  M  L  P  *  L  D  E  V  D  E  L  F  L  L  *  N  G  P  *  W  K  Y  K  E  L  C  Q  L  F  G  L  F  L  P  S  Q  K  *  F  S  S  V  K  I  N  T  E  G  K  K  S  R  A  L  K  S  F  C  I  R  K  *  A  V  S  L  E  V  N  C  T  V  F  C  H  I  N  Q  I  V  N  K  N  V  P  I  F  N  F </second_frame>
            <third_frame>   A  S  I  L  F  H  S  R  A  I  I  I  P  W :   V  Q  K  F  S  A  I  S  C  S  R  G  R  D  Y  S  A  F  P  V  R  H  I  P  K  R  S  N  E  S  Q  E  S  E  S  A  L  P  K  K  H  F  L  D  I  E  K  N  S  F  L  N  R  K  V  Q  E  T  E  F  S  V  G  G  G  G  S  K  Y  G  D  I  P  F  H  S  K  S  R  N  H  K  Q  K  L  I  T  S  L  D  D  E  V  E  W   : G  K  E  D  E  V  D  E  D  F  V  L  E  H  G  I  A  E  T  D  K  A  R  Q  D  A  E  T  I  A  V  R  L  L  A  S  R :   A  L  T  A  V  E  L  Q  K  K  L  M  G  R  K  F  T  V  N  V  V  N  A  V  I  T  D  F  H  T  R :   G  L  I  N  D  G  L  Y  A  E  M  F  S  R  S  R  W  S  S  S  S  W  G  P  R  R  I  K  Q  :  A  L  I  K  K  G  V  S  E  V  D  A  D  N  A  I  K  L  V  F  K  N  D  E  A  G  E  E  Q  E  S  R  E  S  G  H  A  I  S  K  P  S  L  D  Q  L  Y  V  Q  A  S  K  Q  W  L  K  G  Q  D  M  P  R  E  K  R  K  A  R  I  I  R  W  L  Q  Y  R  G  F  D  W  S  V  V  S  F  I  L  K  K  L  E  S  S  H  P  Q  *  S  P  F  T  Q  R  K  G  L  *  *  S  V  *  C  C  L  N  S  M  R  *  T  S  S  S  Y  C  K  M  A  L  S  G  S  T  R  N  C  V  N  Y  S  V  Y  F  C  H  L  K  N  S  F  Q  V  L  R  S  I  Q  K  A  R  S  Q  E  P  *  S  L  F  V  S  G  S  E  Q  F  H  W  K  *  I  V  L  Y  F  A  T  L  T  R  L  *  I  R  M  F  P  F  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62947" stop="62907"/>
                    <exon start="61801" stop="61515"/>
                    <exon start="61426" stop="61318"/>
                    <exon start="60987" stop="60895"/>
                    <exon start="60595" stop="60508"/>
                    <exon start="60097" stop="59807"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASILFHSRAIIIPWVQKFSAISCSRGRDYSAFPVRHIPKRSNESQESESALPKKHFLDIEKNSFLNRKVQETEFSVGGGGSKYGDIPFHSKSRNHKQKLITSLDDEVEWGKEDEVDEDFVLEHGIAETDKARQDAETIAVRLLASRALTAVELQKKLMGRKFTVNVVNAVITDFHTRGLINDGLYAEMFSRSRWSSSSWGPRRIKQALIKKGVSEVDADNAIKLVFKNDEAGEEQESRESGHAISKPSLDQLYVQASKQWLKGQDMPREKRKARIIRWLQYRGFDWSVVSFILKKLESSHPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="80947" PGL_stop="86787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80947" e_stop="81053"/>
            <exon e_start="83017" e_stop="83180"/>
            <exon e_start="84029" e_stop="84120"/>
            <exon e_start="84660" e_stop="84729"/>
            <exon e_start="85193" e_stop="85311"/>
            <exon e_start="85647" e_stop="85743"/>
            <exon e_start="86007" e_stop="86086"/>
            <exon e_start="86637" e_stop="86787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80947" e_stop="81053" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="81054" i_stop="83016" i_length="1963"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83017" e_stop="83180" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="83181" i_stop="84028" i_length="848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84029" e_stop="84120" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.837" acc_prob="0.989">
            <gDNA_intron_boundary i_start="84121" i_stop="84659" i_length="539"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84660" e_stop="84729" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84730" i_stop="85192" i_length="463"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85193" e_stop="85311" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.983">
            <gDNA_intron_boundary i_start="85312" i_stop="85646" i_length="335"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85647" e_stop="85743" e_length="97"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="85744" i_stop="86006" i_length="263"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86007" e_stop="86086" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.945" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86087" i_stop="86636" i_length="550"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="86637" e_stop="86787" e_length="151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80947" stop="81053"/>
              <exon start="83017" stop="83180"/>
              <exon start="84029" stop="84120"/>
              <exon start="84660" stop="84729"/>
              <exon start="85193" stop="85311"/>
              <exon start="85647" stop="85743"/>
              <exon start="86007" stop="86086"/>
              <exon start="86637" stop="86787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATAAATACACACTACTGTTCATTGTATCTTTCTTTCTTCTTCTCCGACTAATTTCAAATCTCAAATAAATCTTCCCCAAATTTAGAAAGAACAAACAAGCTTCAG : AGCTTAAAACCAACAGATGGGTTCAAATGCAGTTGATGATTTGATAGAAGCGTCATCAGGAGTTCATTATTCTGGGTTCCATATGGAGCAGCCACGTACTCCAGAAATTGAGCAACCAACAACCTCTATAGATGATAGTTTTCATAAGCAACCCTTCATCATTG : GCGTTGCTGGAGGTGCTGCATCTGGCAAGACAACAGTTTGTGATTTAATTATTGAGCAGCTTCGTGATCAGCGAGTTGTACTAGTTAACCAG : GATTCTTTTTATCATACTTTGACTCCTGAAGAACTGACAAAAGTTCATGAGTACAACTTTGACCATCCTG : ATGCATTTGACACCGAAAAATTGTTGCGTGTGGTGGAGGAATTGAAGCAGGGGCAAGCAGTAGATATTCCAAAATATGATTTTAAGAGTTACAAAAATGACGTATTCCCTCTTCGAAGG : GTCAATCCTTCAGATGTTATAATCTTGGAAGGCATACTCATCTTTCACGATCCACGTGTCCGAGATCTGATGAATATGAAGATATTTGTTGATACAG : ATGCTGATGTACGTCTTGCGAGGAGAATAAGACGTGACACAGCTGAAAAGGGAAGAGATATTAGTATGGTGCTTGATCAG : TACTCTAAGTTTGTGAAAGCTGCTTTTGATGACTTCATTCTTCCTACAAAGAAGTATGCTGATGTTATCATTCCCCGAGGTGGAGACAATCATGTTGCTATCGATTTGATTGTGCAACACATTCGGACAAAACTTGGTCAACATGATCTTT</gDNA_template>
            <first_frame> S  *  I  H  T  T  V  H  C  I  F  L  S  S  S  P  T  N  F  K  S  Q  I  N  L  P  Q  I  *  K  E  Q  T  S  F  R :   A  *  N  Q  Q  M  G  S  N  A  V  D  D  L  I  E  A  S  S  G  V  H  Y  S  G  F  H  M  E  Q  P  R  T  P  E  I  E  Q  P  T  T  S  I  D  D  S  F  H  K  Q  P  F  I  I   : G  V  A  G  G  A  A  S  G  K  T  T  V  C  D  L  I  I  E  Q  L  R  D  Q  R  V  V  L  V  N  Q  :  D  S  F  Y  H  T  L  T  P  E  E  L  T  K  V  H  E  Y  N  F  D  H  P   : D  A  F  D  T  E  K  L  L  R  V  V  E  E  L  K  Q  G  Q  A  V  D  I  P  K  Y  D  F  K  S  Y  K  N  D  V  F  P  L  R  R  :  V  N  P  S  D  V  I  I  L  E  G  I  L  I  F  H  D  P  R  V  R  D  L  M  N  M  K  I  F  V  D  T   : D  A  D  V  R  L  A  R  R  I  R  R  D  T  A  E  K  G  R  D  I  S  M  V  L  D  Q  :  Y  S  K  F  V  K  A  A  F  D  D  F  I  L  P  T  K  K  Y  A  D  V  I  I  P  R  G  G  D  N  H  V  A  I  D  L  I  V  Q  H  I  R  T  K  L  G  Q  H  D  L  </first_frame>
            <second_frame>  H  K  Y  T  L  L  F  I  V  S  F  F  L  L  L  R  L  I  S  N  L  K  *  I  F  P  K  F  R  K  N  K  Q  A  S   : E  L  K  T  N  R  W  V  Q  M  Q  L  M  I  *  *  K  R  H  Q  E  F  I  I  L  G  S  I  W  S  S  H  V  L  Q  K  L  S  N  Q  Q  P  L  *  M  I  V  F  I  S  N  P  S  S  L  :  A  L  L  E  V  L  H  L  A  R  Q  Q  F  V  I  *  L  L  S  S  F  V  I  S  E  L  Y  *  L  T  R :   I  L  F  I  I  L  *  L  L  K  N  *  Q  K  F  M  S  T  T  L  T  I  L  :  M  H  L  T  P  K  N  C  C  V  W  W  R  N  *  S  R  G  K  Q  *  I  F  Q  N  M  I  L  R  V  T  K  M  T  Y  S  L  F  E  G :   S  I  L  Q  M  L  *  S  W  K  A  Y  S  S  F  T  I  H  V  S  E  I  *  *  I  *  R  Y  L  L  I  Q  :  M  L  M  Y  V  L  R  G  E  *  D  V  T  Q  L  K  R  E  E  I  L  V  W  C  L  I  S :   T  L  S  L  *  K  L  L  L  M  T  S  F  F  L  Q  R  S  M  L  M  L  S  F  P  E  V  E  T  I  M  L  L  S  I  *  L  C  N  T  F  G  Q  N  L  V  N  M  I  F </second_frame>
            <third_frame>   I  N  T  H  Y  C  S  L  Y  L  S  F  F  F  S  D  *  F  Q  I  S  N  K  S  S  P  N  L  E  R  T  N  K  L  Q  :  S  L  K  P  T  D  G  F  K  C  S  *  *  F  D  R  S  V  I  R  S  S  L  F  W  V  P  Y  G  A  A  T  Y  S  R  N  *  A  T  N  N  L  Y  R  *  *  F  S  *  A  T  L  H  H  W :   R  C  W  R  C  C  I  W  Q  D  N  S  L  *  F  N  Y  *  A  A  S  *  S  A  S  C  T  S  *  P   : G  F  F  L  S  Y  F  D  S  *  R  T  D  K  S  S  *  V  Q  L  *  P  S  * :   C  I  *  H  R  K  I  V  A  C  G  G  G  I  E  A  G  A  S  S  R  Y  S  K  I  *  F  *  E  L  Q  K  *  R  I  P  S  S  K   : G  Q  S  F  R  C  Y  N  L  G  R  H  T  H  L  S  R  S  T  C  P  R  S  D  E  Y  E  D  I  C  *  Y  R :   C  *  C  T  S  C  E  E  N  K  T  *  H  S  *  K  G  K  R  Y  *  Y  G  A  *  S   : V  L  *  V  C  E  S  C  F  *  *  L  H  S  S  Y  K  E  V  C  *  C  Y  H  S  P  R  W  R  Q  S  C  C  Y  R  F  D  C  A  T  H  S  D  K  T  W  S  T  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83024" stop="83180"/>
                    <exon start="84029" stop="84120"/>
                    <exon start="84660" stop="84729"/>
                    <exon start="85193" stop="85311"/>
                    <exon start="85647" stop="85743"/>
                    <exon start="86007" stop="86086"/>
                    <exon start="86637" stop="86786"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQQMGSNAVDDLIEASSGVHYSGFHMEQPRTPEIEQPTTSIDDSFHKQPFIIGVAGGAASGKTTVCDLIIEQLRDQRVVLVNQDSFYHTLTPEELTKVHEYNFDHPDAFDTEKLLRVVEELKQGQAVDIPKYDFKSYKNDVFPLRRVNPSDVIILEGILIFHDPRVRDLMNMKIFVDTDADVRLARRIRRDTAEKGRDISMVLDQYSKFVKAAFDDFILPTKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90163" PGL_stop="92897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90163" e_stop="90228"/>
            <exon e_start="90771" e_stop="91151"/>
            <exon e_start="91385" e_stop="91686"/>
            <exon e_start="92310" e_stop="92897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90163" e_stop="90228" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="90229" i_stop="90770" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90771" e_stop="91151" e_length="381"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.864">
            <gDNA_intron_boundary i_start="91152" i_stop="91384" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91385" e_stop="91686" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91687" i_stop="92309" i_length="623"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="92310" e_stop="92897" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90163" stop="90228"/>
              <exon start="90771" stop="91151"/>
              <exon start="91385" stop="91686"/>
              <exon start="92310" stop="92897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGCTGCTTCCTTAGCTTTATCCTTTTAGCACAACCATGTCTGCCTTTGTGGGAAAATATGCCG : AGGAACTTATCAAGAATGCCAAGTACATAGCAACGCCAGGGAAAGGTATTTTGGCAGCAGATGAAAGCACTGGCACTATTGGAAAACGTTTATCAAGCATTAATGTTGAAAACATTGAACCAAATCGTCAAGCACTTCGTGAACTCCTTTTCACTTCACCAAATGCTCTTCCTTACCTCTCTGGTGTTATTCTCTTTGAAGAAACACTTTACCAAAGCACTTCTGATGGAAAGCCGTTTGTTGAACTTCTTCAAGAGAACCATGTTGTTCCTGGGATTAAGGTTGACAAGGGTACCGTGGATTTGGCTGGGACCAATGGTGAGACCACAACTCAAGGTTTCGACTCGTTGGGTGCACGTTGTGCACAGTACTACAAAGCAG : GTGCTCGTTTTGCCAAATGGAGAGCTGTGTTGAAAATTGGGGCTACTGAGCCTTCAGAATTGTCCATTCAGCAAAATGCTCAGGGGCTAGCTCGTTACGCGATAATTTGCCAAGAAAACGGACTTGTGCCAATTGTGGAGCCAGAAATTCTGACAGATGGAAATCATGATATCAAGAAATGTGCAGCAGCCACTGAAACTGTTCTTGCTGCTGTTTATAAGGCACTCAATGACCAGCATGTTCTTCTTGAAGGAACACTTTTGAAGCCTAACATGGTCACCCCTGGCTCTGATAGCCCCAAG : GTTGCAGCAGAAGTAATAGCAGAGTACACGGTCACAGCCCTGCGCCGGACCGTGCCACCAGCAGTGCCAGGGATAGTGTTCTTATCAGGAGGACAGAGTGAGGAAGAGGCAACAGTGAACTTAAATGCAATGAACAAATTGGAAGTGCTTAAGCCATGGACACTGTCATTTTCATTTGGAAGAGCTCTTCAGCAAAGTACCCTCAAGACTTGGGGTGGAAAAAAAGAAAATGTTGGCAAAGCTCAAGAGGCATTTTTGACAAGGTGCAAGGCTAATTCAGATGCAACACTTGGAAAGTATACAGGTGGAAGTGGAAGTGGTGCTGCTTCTGAGAGTCTGTTTGTTAAAGGTTACAAATATTAGAGGGGGAAAAAAGTTGGAGTTGATGATAACAGGTTATATACTATTGTCTTTGGTATTGATTTTAATAACATGTTTTATGTTAAAAATTTAGTCTTTTTAATTTCAAAAATCTTTCCATTAAGTAACTCTTGTAAATTACTGTTCAAAGTTTATATTCACTTAACCAAGAAAATAAAGAAAAAAAATCTATATATATAAAAAACAATAAACTTTGATGAGTGAAAG</gDNA_template>
            <first_frame> V  G  C  F  L  S  F  I  L  L  A  Q  P  C  L  P  L  W  E  N  M  P  :  R  N  L  S  R  M  P  S  T  *  Q  R  Q  G  K  V  F  W  Q  Q  M  K  A  L  A  L  L  E  N  V  Y  Q  A  L  M  L  K  T  L  N  Q  I  V  K  H  F  V  N  S  F  S  L  H  Q  M  L  F  L  T  S  L  V  L  F  S  L  K  K  H  F  T  K  A  L  L  M  E  S  R  L  L  N  F  F  K  R  T  M  L  F  L  G  L  R  L  T  R  V  P  W  I  W  L  G  P  M  V  R  P  Q  L  K  V  S  T  R  W  V  H  V  V  H  S  T  T  K  Q  :  V  L  V  L  P  N  G  E  L  C  *  K  L  G  L  L  S  L  Q  N  C  P  F  S  K  M  L  R  G  *  L  V  T  R  *  F  A  K  K  T  D  L  C  Q  L  W  S  Q  K  F  *  Q  M  E  I  M  I  S  R  N  V  Q  Q  P  L  K  L  F  L  L  L  F  I  R  H  S  M  T  S  M  F  F  L  K  E  H  F  *  S  L  T  W  S  P  L  A  L  I  A  P  R :   L  Q  Q  K  *  *  Q  S  T  R  S  Q  P  C  A  G  P  C  H  Q  Q  C  Q  G  *  C  S  Y  Q  E  D  R  V  R  K  R  Q  Q  *  T  *  M  Q  *  T  N  W  K  C  L  S  H  G  H  C  H  F  H  L  E  E  L  F  S  K  V  P  S  R  L  G  V  E  K  K  K  M  L  A  K  L  K  R  H  F  *  Q  G  A  R  L  I  Q  M  Q  H  L  E  S  I  Q  V  E  V  E  V  V  L  L  L  R  V  C  L  L  K  V  T  N  I  R  G  G  K  K  L  E  L  M  I  T  G  Y  I  L  L  S  L  V  L  I  L  I  T  C  F  M  L  K  I  *  S  F  *  F  Q  K  S  F  H  *  V  T  L  V  N  Y  C  S  K  F  I  F  T  *  P  R  K  *  R  K  K  I  Y  I  Y  K  K  Q  *  T  L  M  S  E   </first_frame>
            <second_frame>  L  A  A  S  L  A  L  S  F  *  H  N  H  V  C  L  C  G  K  I  C  R :   G  T  Y  Q  E  C  Q  V  H  S  N  A  R  E  R  Y  F  G  S  R  *  K  H  W  H  Y  W  K  T  F  I  K  H  *  C  *  K  H  *  T  K  S  S  S  T  S  *  T  P  F  H  F  T  K  C  S  S  L  P  L  W  C  Y  S  L  *  R  N  T  L  P  K  H  F  *  W  K  A  V  C  *  T  S  S  R  E  P  C  C  S  W  D  *  G  *  Q  G  Y  R  G  F  G  W  D  Q  W  *  D  H  N  S  R  F  R  L  V  G  C  T  L  C  T  V  L  Q  S  R :   C  S  F  C  Q  M  E  S  C  V  E  N  W  G  Y  *  A  F  R  I  V  H  S  A  K  C  S  G  A  S  S  L  R  D  N  L  P  R  K  R  T  C  A  N  C  G  A  R  N  S  D  R  W  K  S  *  Y  Q  E  M  C  S  S  H  *  N  C  S  C  C  C  L  *  G  T  Q  *  P  A  C  S  S  *  R  N  T  F  E  A  *  H  G  H  P  W  L  *  *  P  Q   : G  C  S  R  S  N  S  R  V  H  G  H  S  P  A  P  D  R  A  T  S  S  A  R  D  S  V  L  I  R  R  T  E  *  G  R  G  N  S  E  L  K  C  N  E  Q  I  G  S  A  *  A  M  D  T  V  I  F  I  W  K  S  S  S  A  K  Y  P  Q  D  L  G  W  K  K  R  K  C  W  Q  S  S  R  G  I  F  D  K  V  Q  G  *  F  R  C  N  T  W  K  V  Y  R  W  K  W  K  W  C  C  F  *  E  S  V  C  *  R  L  Q  I  L  E  G  E  K  S  W  S  *  *  *  Q  V  I  Y  Y  C  L  W  Y  *  F  *  *  H  V  L  C  *  K  F  S  L  F  N  F  K  N  L  S  I  K  *  L  L  *  I  T  V  Q  S  L  Y  S  L  N  Q  E  N  K  E  K  K  S  I  Y  I  K  N  N  K  L  *  *  V  K  </second_frame>
            <third_frame>   W  L  L  P  *  L  Y  P  F  S  T  T  M  S  A  F  V  G  K  Y  A   : E  E  L  I  K  N  A  K  Y  I  A  T  P  G  K  G  I  L  A  A  D  E  S  T  G  T  I  G  K  R  L  S  S  I  N  V  E  N  I  E  P  N  R  Q  A  L  R  E  L  L  F  T  S  P  N  A  L  P  Y  L  S  G  V  I  L  F  E  E  T  L  Y  Q  S  T  S  D  G  K  P  F  V  E  L  L  Q  E  N  H  V  V  P  G  I  K  V  D  K  G  T  V  D  L  A  G  T  N  G  E  T  T  T  Q  G  F  D  S  L  G  A  R  C  A  Q  Y  Y  K  A   : G  A  R  F  A  K  W  R  A  V  L  K  I  G  A  T  E  P  S  E  L  S  I  Q  Q  N  A  Q  G  L  A  R  Y  A  I  I  C  Q  E  N  G  L  V  P  I  V  E  P  E  I  L  T  D  G  N  H  D  I  K  K  C  A  A  A  T  E  T  V  L  A  A  V  Y  K  A  L  N  D  Q  H  V  L  L  E  G  T  L  L  K  P  N  M  V  T  P  G  S  D  S  P  K  :  V  A  A  E  V  I  A  E  Y  T  V  T  A  L  R  R  T  V  P  P  A  V  P  G  I  V  F  L  S  G  G  Q  S  E  E  E  A  T  V  N  L  N  A  M  N  K  L  E  V  L  K  P  W  T  L  S  F  S  F  G  R  A  L  Q  Q  S  T  L  K  T  W  G  G  K  K  E  N  V  G  K  A  Q  E  A  F  L  T  R  C  K  A  N  S  D  A  T  L  G  K  Y  T  G  G  S  G  S  G  A  A  S  E  S  L  F  V  K  G  Y  K  Y  *  R  G  K  K  V  G  V  D  D  N  R  L  Y  T  I  V  F  G  I  D  F  N  N  M  F  Y  V  K  N  L  V  F  L  I  S  K  I  F  P  L  S  N  S  C  K  L  L  F  K  V  Y  I  H  L  T  K  K  I  K  K  K  N  L  Y  I  *  K  T  I  N  F  D  E  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90180" stop="90228"/>
                    <exon start="90771" stop="91151"/>
                    <exon start="91385" stop="91686"/>
                    <exon start="92310" stop="92672"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYPFSTTMSAFVGKYAEELIKNAKYIATPGKGILAADESTGTIGKRLSSINVENIEPNRQALRELLFTSPNALPYLSGVILFEETLYQSTSDGKPFVELLQENHVVPGIKVDKGTVDLAGTNGETTTQGFDSLGARCAQYYKAGARFAKWRAVLKIGATEPSELSIQQNAQGLARYAIICQENGLVPIVEPEILTDGNHDIKKCAAATETVLAAVYKALNDQHVLLEGTLLKPNMVTPGSDSPKVAAEVIAEYTVTALRRTVPPAVPGIVFLSGGQSEEEATVNLNAMNKLEVLKPWTLSFSFGRALQQSTLKTWGGKKENVGKAQEAFLTRCKANSDATLGKYTGGSGSGAASESLFVKGYKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92673" stop="92870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGKKVGVDDNRLYTIVFGIDFNNMFYVKNLVFLISKIFPLSNSCKLLFKVYIHLTKKIKKKNLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="94782" PGL_stop="94125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94782" e_stop="94125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="94782" e_stop="94125" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94782" stop="94174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339745" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94616" stop="94125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339744" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTATTTGTAGTTTTGATGATTTGACAAACTTACGGACCTCATAAAGGTACCGGGTTTTCTACTTGAGTATTGCGGGTGTCTTCTTTGAAGTATTGCAGATGAAACAAACCCAGGGACCTAGTAGAGATACCAGGCCCTCATGATGATGAGCCAGTCAACTGCCAGCTGGAGACGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTGTTCCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGAAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTGGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGCGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTGGCCTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCATTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> C  Y  L  *  F  *  *  F  D  K  L  T  D  L  I  K  V  P  G  F  L  L  E  Y  C  G  C  L  L  *  S  I  A  D  E  T  N  P  G  T  *  *  R  Y  Q  A  L  M  M  M  S  Q  S  T  A  S  W  R  R  T  E  S  R  C  T  L  P  D  G  V  R  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  L  C  S  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  H  K  E  K  A  E  S  F  L  G  Q  Q  Q  H  L  E  L  F  V  W  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  R  *  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  W  P  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  R  F  C  I  *  R  L  V  K  T  I  E  </first_frame>
            <second_frame>  V  I  C  S  F  D  D  L  T  N  L  R  T  S  *  R  Y  R  V  F  Y  L  S  I  A  G  V  F  F  E  V  L  Q  M  K  Q  T  Q  G  P  S  R  D  T  R  P  S  *  *  *  A  S  Q  L  P  A  G  D  V  Q  K  V  G  A  H  F  P  M  A  S  E  K  C  D  L  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  I  C  V  P  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  T  K  K  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  G  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  L  A  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </second_frame>
            <third_frame>   L  F  V  V  L  M  I  *  Q  T  Y  G  P  H  K  G  T  G  F  S  T  *  V  L  R  V  S  S  L  K  Y  C  R  *  N  K  P  R  D  L  V  E  I  P  G  P  H  D  D  E  P  V  N  C  Q  L  E  T  Y  R  K  *  V  H  T  S  R  W  R  Q  K  S  V  T  F  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  F  V  F  Q  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  Q  R  K  G  R  I  I  P  R  T  T  A  T  S  G  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  A  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  W  L  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  S  L  L  H  L  K  I  S  E  N  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0119A22.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94560" stop="94345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFQPMAKKFRKVTCPYKRHFPKHLCSSFCNLIKTFQELLQRLHKEKAESFLGQQQHLELFVWLFRNLFSCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 56048 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 2001 bytes was the average size of a spliced alignment
$ 24496 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1633 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 62 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:20:13
-->
