FGENESH 2.4 Prediction of potential genes in Nicotiana_dicot genomic DNA Time : Fri Feb 9 17:40:20 2007 Seq name: C08SLm0012O12.1 submitted_to_sgn_as:C08SLm0012O12 Length of sequence: 89520 Number of predicted genes 40 in +chain 20 in -chain 20 Number of predicted exons 74 in +chain 35 in -chain 39 Positions of predicted genes and exons: Variant 1 from 1, Score:1429.130371 G Str Feature Start End Score ORF Len 1 - 1 CDSf 20 - 130 6.84 20 - 130 111 2 + 1 CDSo 2265 - 2414 1.68 2265 - 2414 150 2 + PolA 2750 0.75 3 + 1 CDSo 3527 - 3613 0.04 3527 - 3613 87 3 + PolA 3721 2.25 4 + 1 CDSo 11612 - 11710 -0.05 11612 - 11710 99 4 + PolA 11768 2.25 5 - PolA 13020 2.25 5 - 1 CDSo 13463 - 13585 2.88 13463 - 13585 123 6 + 1 CDSo 14060 - 14152 0.93 14060 - 14152 93 6 + PolA 14210 2.25 7 + 1 CDSo 22649 - 23053 34.96 22649 - 23053 405 7 + PolA 23283 2.25 8 - PolA 23990 2.25 8 - 1 CDSo 24101 - 24205 2.64 24101 - 24205 105 9 + 1 CDSo 25559 - 26005 25.67 25559 - 26005 447 9 + PolA 26173 -0.55 10 + 1 CDSf 29037 - 29067 -3.86 29037 - 29066 30 10 + 2 CDSl 29526 - 29644 5.04 29528 - 29644 117 10 + PolA 29687 2.25 11 + 1 CDSf 29941 - 29986 1.02 29941 - 29985 45 11 + 2 CDSl 30536 - 30603 9.31 30538 - 30603 66 11 + PolA 30641 2.25 12 - PolA 31236 2.25 12 - 1 CDSl 31350 - 31362 -2.20 31350 - 31361 12 12 - 2 CDSf 31747 - 31826 8.68 31749 - 31826 78 13 - PolA 32163 2.25 13 - 1 CDSo 32187 - 32288 1.80 32187 - 32288 102 14 + 1 CDSo 32428 - 32916 60.23 32428 - 32916 489 14 + PolA 33147 2.25 15 + 1 CDSo 34041 - 34115 5.61 34041 - 34115 75 15 + PolA 34158 0.75 16 - PolA 34179 0.75 16 - 1 CDSl 34372 - 34554 41.62 34372 - 34554 183 16 - 2 CDSi 34649 - 34855 20.33 34649 - 34855 207 16 - 3 CDSi 35290 - 35496 24.92 35290 - 35496 207 16 - 4 CDSi 35713 - 35761 2.29 35713 - 35760 48 16 - 5 CDSi 35869 - 36068 27.32 35871 - 36068 198 16 - 6 CDSi 36157 - 36242 -0.25 36157 - 36240 84 16 - 7 CDSi 36361 - 36517 17.85 36362 - 36517 156 16 - 8 CDSi 37266 - 37430 27.00 37266 - 37430 165 16 - 9 CDSi 37973 - 38166 40.46 37973 - 38164 192 16 - 10 CDSf 38413 - 38491 -1.50 38414 - 38491 78 17 - PolA 39011 2.25 17 - 1 CDSl 39032 - 39111 4.22 39032 - 39109 78 17 - 2 CDSf 39277 - 39328 -0.78 39278 - 39328 51 18 + 1 CDSf 41471 - 42370 148.30 41471 - 42370 900 18 + 2 CDSl 43166 - 43414 10.12 43166 - 43414 249 18 + PolA 43453 -0.55 19 - PolA 43854 2.25 19 - 1 CDSo 44030 - 44155 4.70 44030 - 44155 126 20 + 1 CDSf 44559 - 44597 1.16 44559 - 44597 39 20 + 2 CDSi 44764 - 45052 40.81 44764 - 45051 288 20 + 3 CDSi 45126 - 45211 9.76 45128 - 45211 84 20 + 4 CDSi 45337 - 45560 35.24 45337 - 45558 222 20 + 5 CDSi 45784 - 45850 7.67 45785 - 45850 66 20 + 6 CDSi 45942 - 46001 6.95 45942 - 46001 60 20 + 7 CDSl 46094 - 46207 6.04 46094 - 46207 114 20 + PolA 46771 2.25 21 - PolA 46804 2.25 21 - 1 CDSl 47138 - 47305 27.91 47138 - 47305 168 21 - 2 CDSi 47703 - 47907 -5.02 47703 - 47906 204 21 - 3 CDSf 48040 - 48380 25.11 48042 - 48380 339 22 - PolA 48638 -0.55 22 - 1 CDSl 48784 - 49302 64.98 48784 - 49302 519 22 - 2 CDSi 49573 - 50987 175.21 49573 - 50985 1413 22 - 3 CDSf 51050 - 51131 -1.70 51051 - 51131 81 23 + 1 CDSf 51166 - 51195 -10.71 51166 - 51195 30 23 + 2 CDSl 51710 - 51883 24.64 51710 - 51883 174 23 + PolA 51933 0.75 24 - PolA 52038 0.75 24 - 1 CDSo 52324 - 52647 35.16 52324 - 52647 324 25 - PolA 53018 2.25 25 - 1 CDSo 53313 - 53441 3.74 53313 - 53441 129 26 - PolA 56093 2.25 26 - 1 CDSo 56258 - 56674 36.94 56258 - 56674 417 27 - PolA 59237 2.25 27 - 1 CDSo 59390 - 59797 43.56 59390 - 59797 408 28 + 1 CDSo 63327 - 63929 40.35 63327 - 63929 603 28 + PolA 64049 0.75 29 - PolA 64180 0.75 29 - 1 CDSl 64209 - 64383 24.60 64209 - 64382 174 29 - 2 CDSf 64482 - 64579 10.92 64484 - 64579 96 30 + 1 CDSf 64796 - 64897 1.86 64796 - 64897 102 30 + 2 CDSi 65631 - 65686 -0.15 65631 - 65684 54 30 + 3 CDSl 65775 - 65907 5.52 65776 - 65907 132 30 + PolA 65997 0.75 31 - PolA 66688 2.25 31 - 1 CDSl 66779 - 66891 24.55 66779 - 66889 111 31 - 2 CDSf 67033 - 67093 1.52 67034 - 67093 60 32 + 1 CDSf 67155 - 67429 30.45 67155 - 67427 273 32 + 2 CDSi 67808 - 68705 77.14 67809 - 68705 897 32 + 3 CDSl 75321 - 75833 41.25 75321 - 75833 513 32 + PolA 75953 0.75 33 - PolA 76084 0.75 33 - 1 CDSl 76113 - 76287 24.60 76113 - 76286 174 33 - 2 CDSf 76386 - 76483 10.92 76388 - 76483 96 34 + 1 CDSf 76700 - 76801 1.86 76700 - 76801 102 34 + 2 CDSl 77679 - 77813 7.31 77679 - 77813 135 34 + PolA 77904 0.75 35 - PolA 78755 0.75 35 - 1 CDSl 78768 - 78809 4.43 78768 - 78809 42 35 - 2 CDSf 79440 - 79481 0.64 79440 - 79481 42 36 + 1 CDSo 80202 - 80288 -1.47 80202 - 80288 87 36 + PolA 80347 2.25 37 + 1 CDSo 82030 - 82446 34.61 82030 - 82446 417 37 + PolA 82591 2.25 38 - PolA 84546 2.25 38 - 1 CDSo 85013 - 85123 5.34 85013 - 85123 111 39 + 1 CDSo 86181 - 86465 4.34 86181 - 86465 285 39 + PolA 86481 2.25 40 - PolA 86763 2.25 40 - 1 CDSo 87005 - 87556 61.61 87005 - 87556 552 Predicted protein(s): >FGENESH: 1 1 exon (s) 20 - 130 37 aa, chain - MNSFAHVPPGFRFHPTDEELVDYYLRKKIASKRIDLD >FGENESH: 2 1 exon (s) 2265 - 2414 49 aa, chain + MDGIFSNLSIGSLIHTIKISSKKGGLFKSYKYFKNLIPLSMWTGFNCLV >FGENESH: 3 1 exon (s) 3527 - 3613 28 aa, chain + MVKVSISNSVSAITGSISLIPQDKQKVN >FGENESH: 4 1 exon (s) 11612 - 11710 32 aa, chain + MRTNRELDEWNFGIITITFNSIPTAWLHMLSY >FGENESH: 5 1 exon (s) 13463 - 13585 40 aa, chain - MGLGLEKSNFNAYTMGPTSNTNKGKLGIACIGITVGFGGE >FGENESH: 6 1 exon (s) 14060 - 14152 30 aa, chain + MNNYIKSVNNGYGAENETVSFNQRTRIRTV >FGENESH: 7 1 exon (s) 22649 - 23053 134 aa, chain + MKKVRSSKLQKCVQSLKQVLCLGKNNSGYFRVGQEPMKKVSVPKGHLAMYVGEQDDDTCR VVVPVIYFNHPLFAELLREAEMVYGYNYPGRIQIPCRISDFENVKSRIAATVGGGNGDEG RVVFGEGYSDLCMQ >FGENESH: 8 1 exon (s) 24101 - 24205 34 aa, chain - MDVLLSNFITTTCLANTMQANLESSVTSIQFCLY >FGENESH: 9 1 exon (s) 25559 - 26005 148 aa, chain + MKKLLVRVLLHRRRKGRIFSRAISNLCKLGHFLKQSTNRLCFGRPNAGYIRVGQEPIASK QVSVPKGHLAVYVGEKKDDTCRVMVPVIYFNHPLFAELLKEAEMVYGYNHSGGIQIPCRV SEFENVKSRIAAMGGGGNSRGERSWKGK >FGENESH: 10 2 exon (s) 29037 - 29644 49 aa, chain + MVRDNLLGKKYWWPCGDQFVILPSMINLDWEVQIFYGPNSSIPCVLPTQ >FGENESH: 11 2 exon (s) 29941 - 30603 37 aa, chain + MVLNITLRNTLNSENGADPHGVCRVLEHPLTSLRNIF >FGENESH: 12 2 exon (s) 31350 - 31826 30 aa, chain - MYPQIASFRKKILFFLYTFETQMLMISNNH >FGENESH: 13 1 exon (s) 32187 - 32288 33 aa, chain - MEEQMYHSAYIYLRDGGYGRKKWSAHTMRIVGI >FGENESH: 14 1 exon (s) 32428 - 32916 162 aa, chain + MKKNRGFRIGRRLVRVFSWLIHRRRNGNKRLSCASRAISKLCKLGVLLKQRAKGLCFGKP NSGYVRVGQEPIDLKQVSVPKGHLAVYVGEKEDDTCRIVVPVIYFNHPLFAELLREAEMV YEYNYPGRIQIPCRISEFENVKSRIAATGGGGGELRWRQSYR >FGENESH: 15 1 exon (s) 34041 - 34115 24 aa, chain + MTGKFSYNEWSKKKKSASLEELSS >FGENESH: 16 10 exon (s) 34372 - 38491 508 aa, chain - MIVMIEVIDNDTRLSIMIVMIEVIGNVMVGAISIEPKIDSRRLGRPHRFWDPLIRSPVDR DDDDETEEGGGGVRWAVLVAGSNGYGNYRHQADVCHAYQILKRGGLNDENIVVFMYDDIA KSELNPRPGVIINHPNGSDVYAGVPKDYTGEHVTAANLYAVLLGDKSAVKGGSGKVVNSG PNDRIFLYYSDHGGPGVLGMPNMPYLYGKDLIEVLKKKYAARTYKEMVLYIEACESGSVF EGLMPENLNIYVMTASNAEESSWGTYCPGMDPPPPSEYITCLGDLYSVAWMEDSESHNLK KETIKQQYEKVKERTSNSNNYNAGSHVMEYGSKEIKPEKVYLYQGFDPATVNLPANKIDF ARLEVVNQRDADLLFLWERYKKLEDNSLEKAKLRKEITETMLHRQHLDGSIDAVGVFLFG PIKGGSVLSSVRKPGLPLVDDWECLKSTVRLFEAHCGSLTQYGMKHMRAFANICNNGISS DAMEDAFMAACNGHSLEEYTTANRGFSA >FGENESH: 17 2 exon (s) 39032 - 39328 43 aa, chain - MENRVLQNKIERGDATQYKSCFTDHSKLCVTTSPSMHVIVLSE >FGENESH: 18 2 exon (s) 41471 - 43414 382 aa, chain + MADEAKAKGNAAFSAGNFTDAINHFTEAINLAPTNHVLYSNRSAAYASLGKYSDALSDAQ KTVDLKPDWAKGYSRLGAAHSGLHHYEDAVSAYKKGLEIDPNNEGLKSGLADAQSAQARS RGPAVPPSPFGDAFSGPEMWTKLTADASTRGYLQQPDFVNMMKDIQKNPSNLNLYLKDQR VMQALGVLLGVKLSTRMPEEDDEMPEASTERKRPAETEHVKEEKRPEPEPEPEPMEVSEE EKEIKEKKAKAQKEKEAGNAAYKKKDFETAIQHYTKAIELDDGDISFITNRAAVYLEMGK KRSDIWGIYPSQGVHFSFGRLAWLLLDPCQIAIVVFLINDLLFFISQLSRVADLLCYLFP FHFFGWWKRVSLIFPAVVELPN >FGENESH: 19 1 exon (s) 44030 - 44155 41 aa, chain - MIHPKRHGSNEKSPFKQLDTRTDTDLPGEAYIQASLPQKRK >FGENESH: 20 7 exon (s) 44559 - 46207 292 aa, chain + MVMNRVPIPIASQYEECIKDCDTAVERGRELRSDYKMIARALTRKGTALAKLAKSSKDFE AAIEVFQKALTEHRNPDTLKKLNEAERAKKELEQQEYFNPQIADEEREKGNQLFKEMKYP EAVKHYTESIKRNPKDPKAYSNRAACYTKLGALPEGLKDAEKCIELDPTFVKGYTRKGAV QFFMKEYEKALKTYQEGLKLDPQNQELLDGVKRCVEQINKASRGDLTPEELKERQAKGMQ DPEIQNILTDPVMRQVLSDFQENPKAAQDHMKNPLVMDKIQKLINAGIVQVR >FGENESH: 21 3 exon (s) 47138 - 48380 237 aa, chain - MAKYMSSPLFERVQCLEKNSLFFPFLIFPPVLLDCRPSHRQFSRPVAGSMAGLSNPLLIR NISPKNLNLVSSIPTPQDSVEIFSNNFEEEQPEIGFLKSMIPFSCFPSVAVFVSSFLALS WTISGEEFHPGFLKISCPDLNIILSRCVTFIGYFVEWIFFFCDCFPYYLGSKRQAAISCF CLVVDSLVPLAEMFNYVSTLRGMTKGRASYVMQLAKFDVVPQHIQNQLAKKEEAAAA >FGENESH: 22 3 exon (s) 48784 - 51131 671 aa, chain - MSYEMSMYFRLVLTRKSADIDVIQGSFEEKRTVPLKDYRNIGIMAHIDAGKTTTTERVLY YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEV ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV TNLGAKPLVIQIPIGAEDTFKGLVDLVMMKAIVWSGEELGAKFSYEDIPADLQELAEEYR ALMIETVVELDDDVMEKYLEGVEPDEATIKQLIRKGTISGNFVPVLCGSAFKNKGVQPLL DAVVDYLPSPVDVPPMNGTDPDNPEVIIERAPSDDEPFTGLAFKIMNDPFVGSLTFVRVY SGKLSAGSYVLNANKGRKERIGRLLEMHANSREDVKTALTGDIVALAGLKDTITGETLSD PEKPVVLERMDFPDPVIKVAIEPKTKADIDKMAQGLIKLAQEDPSFHFSRDEEINQTVIE GMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISRNSEVKYVHKKQSGGSGQFADITV RFEPMEAGGGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSY HDVDSSVLAFQLAARGAFREGMRKAGPQLLEPIMKVEVVTPEEHLGDVIGDLNSRRGQIN SFGDKPGGLKV >FGENESH: 23 2 exon (s) 51166 - 51883 67 aa, chain + MVFLIIDLFWRRANLRHLNYNTRYLHSQYGFRVTLSTRTYVDWLQSPSLLANRNPNSGLP WSLFYLL >FGENESH: 24 1 exon (s) 52324 - 52647 107 aa, chain - MAAESVTRMSSAASSLCNFNGSKRPVPVSNRVTSSRRNRCVKLQSLASASMSEFFGSSRV FSVNGSRSLGLSQKTRKNGFSVIAMAAAEGIKFQLFLLEFQNFNFMV >FGENESH: 25 1 exon (s) 53313 - 53441 42 aa, chain - MWCNRWSCSFLNQRSQDQVFGMKKIFDRRFSPNEALRGTNSN >FGENESH: 26 1 exon (s) 56258 - 56674 138 aa, chain - MSKFGATSIALVLTLNILFFTMVSSTNAPCPPPPHPKPHYPTPTPSTPSSKGKCPKDTLK LNACANLLGDLLHLVVGSSPAKTQCCSLIEGLVDLDAAVCLCTALKANVLGINLNVPLSL SLLLNNCGKYAPKNFQCA >FGENESH: 27 1 exon (s) 59390 - 59797 135 aa, chain - MAKFGASSIALVLTLNILFFTMVSSTNVPCPSPPHHKPHPTPSTPSPKGECPKDTLKLNA CANLLGDLLHLIIGSSPSKTQCCSLIEGLVDLDAAVCLCTALKANLLGINLNLPLSLSLL LNNCGKYAPKDFQCA >FGENESH: 28 1 exon (s) 63327 - 63929 200 aa, chain + MYMYICISYTHSFTPAHSTPLSHSQNKITQAQPLLIFSPNINSQAQLPQPNTNLILTQPN PLSTRPISLSPSSSPSPRDPPANEETQQIISQSPRAEALKKQSLPRALSLARSSLCPASP PRELLFSHPTQTFFFLLLLRVNSVPEGTDVISCKRQQPHVLLPSPFILLERDATTETHTL SSRSAKRRSRPLQHACAMEV >FGENESH: 29 2 exon (s) 64209 - 64579 90 aa, chain - MTSQEANNVNKATALYKFTGDLQRKRRRRKNRNDTNQDSKPIKKTDKELENVPFSEQRTG DDRAEQELPRRKDTPRRLRRFDGTPRSTHC >FGENESH: 30 3 exon (s) 64796 - 65907 96 aa, chain + MVVHLDYDVMSQLASHLVLLTMLKIGGSVCPSIHVQIRRAIQGKVAENIYSNRIGPGPFS PPPLLTGPKAIFFSAGFKEGPSIRIRLGQVGQSPIE >FGENESH: 31 2 exon (s) 66779 - 67093 57 aa, chain - MNFHHTLRKGSGTVTILVFRGQIDTGWASNGPNTPWALGRLSSNALTFGILARLYAS >FGENESH: 32 3 exon (s) 67155 - 75833 561 aa, chain + MNAWPGLIGTMVKFWDSENMVFRFGEVELTPTIEEILISYESIAMCNKRKRHPDTDLLNP ITWDFAKIKEILSLVKAEWMDKLPGPNIPFRKRSDELHSHDWWLYHNRCNKTGGESFWYP RLRGLREEDVQWSIDSLVVTKNMVVRAEKVPYLVFAGLRGTRPYAPGRVLRQLGGKQELP QIADMRKFVTGHENGRVAFSEDMRRMWRSRRVLGEPVPDRFRPECSREYKEWLKKSLAGT IEPGPNVPHIIADVGAKHQVRLHRLQEKFDKSELEHQRRHSEDAKVIARLKQELRRARQC MTELDDSIERQIQSIEGSVIKKELDWQEIISGQIDMPCGKRSTSPRGPDLAKDQRRHDFY HPLRGTVLFVLCFVIYFSGLFSVLCLSDILDAQPLLIFSPNINSQAQLPQPNTNLILTQP NPLSTRPISLSPSSSPSPRDPPANEETQQIISQSPRAEALKKQSLPRALSLARSSLCPAS PPRELLFSHPTQTFFFLLLLRVNSVPEGTDVISCKRQQPHVLLPSPFILLERDATTETHT LSSRSAKRRSRPLQHACAMEV >FGENESH: 33 2 exon (s) 76113 - 76483 90 aa, chain - MTSQEANNVNKATALYKFTGDLQRKRRRRKNRNDTNQDSKPIKKTDKELENVPFSEQRTG DDRAEQELPRRKDTPRRLRRFDGTPRSTHC >FGENESH: 34 2 exon (s) 76700 - 77813 78 aa, chain + MVVHLDYDVMSQLASHLVLLTMLKIGGSVCPSIHDWARALQPTPPLLTGPKAIFFSAGFK EGPSIRIRLGQVGQSPIE >FGENESH: 35 2 exon (s) 78768 - 79481 27 aa, chain - MILSNCFNTVDGNEHYKICGIDRSWPV >FGENESH: 36 1 exon (s) 80202 - 80288 28 aa, chain + MKPNIGHTFSLTEEKDNDIGIYILLIFN >FGENESH: 37 1 exon (s) 82030 - 82446 138 aa, chain + MVKFGAYSIALVLTLNILFFTMVSSTNVPCPPPPHPKPHYPTPTPSTPSSKGKCPKDTLK LNACANLLGDLLHLVVGSSPAKTQCCSLIEGLVDLDAAVCLCTALKANVLGINLNIPLSL SLLLNNCGKYAPKNFQCK >FGENESH: 38 1 exon (s) 85013 - 85123 36 aa, chain - MHSRMICAKIKDFWILYQMCDLRVSEHVKPNWPREA >FGENESH: 39 1 exon (s) 86181 - 86465 94 aa, chain + MMLLLLEKLIFEPAIRQSLSGCVCIEQYNSSLIKLSTYHPRQKIQIKIKVDFPFMTLYKN IDPRATKVVEQDHCYGTAKSLYITPSRFKHLFPV >FGENESH: 40 1 exon (s) 87005 - 87556 183 aa, chain - MAKSAMASNPAAIKFIKVSCKATLYPVLCVQCLSAFANTVKQSEKQLAHAALSVSLSKAK STIIFVSKLNRMRGLKPIEKQAVKDCMDTMSDSVDQINKSIPELGHTGQFSSGQDFMWHV SNVQTWVSAALTDESTCLDGFSGPGVNVNVKAALRLRILHVAQVTSNALALVNRFADRHR PSP