FGENESH 2.4 Prediction of potential genes in Tomato genomic DNA Time : Thu Dec 13 08:07:51 2007 Seq name: C08HBa0183N17.1 AP009411.1 htgs_phase:3 submitted_to_sgn_as:C08HBa0183N17 sequenced_by:kazusa Length of sequence: 50387 Number of predicted genes 10 in +chain 7 in -chain 3 Number of predicted exons 42 in +chain 35 in -chain 7 Positions of predicted genes and exons: Variant 1 from 1, Score:721.188916 G Str Feature Start End Score ORF Len 1 + 1 CDSf 87 - 737 84.05 87 - 737 651 1 + 2 CDSi 1603 - 1700 7.41 1603 - 1698 96 1 + 3 CDSi 1903 - 2092 26.04 1904 - 2092 189 1 + 4 CDSl 3797 - 3955 9.11 3797 - 3955 159 1 + PolA 4084 -3.19 2 - PolA 4263 -0.59 2 - 1 CDSl 4500 - 4706 6.42 4500 - 4706 207 2 - 2 CDSi 4974 - 5111 4.83 4974 - 5111 138 2 - 3 CDSf 5240 - 5353 5.50 5240 - 5353 114 3 + 1 CDSf 5941 - 5986 -4.50 5941 - 5985 45 3 + 2 CDSi 6732 - 6827 7.73 6734 - 6826 93 3 + 3 CDSi 7039 - 7148 11.79 7041 - 7148 108 3 + 4 CDSl 8467 - 8856 31.45 8467 - 8856 390 3 + PolA 8917 -4.49 4 + 1 CDSf 9042 - 9191 11.78 9042 - 9191 150 4 + 2 CDSi 9260 - 9336 -3.30 9260 - 9334 75 4 + 3 CDSi 9824 - 10027 8.86 9825 - 10025 201 4 + 4 CDSl 10475 - 10736 16.40 10476 - 10736 261 4 + PolA 11508 1.61 5 + 1 CDSf 11746 - 11748 -0.45 11746 - 11748 3 5 + 2 CDSi 11944 - 12013 -1.97 11944 - 12012 69 5 + 3 CDSi 12140 - 12234 5.71 12142 - 12234 93 5 + 4 CDSl 12282 - 12407 1.38 12282 - 12407 126 5 + PolA 12829 1.61 6 - PolA 26250 1.61 6 - 1 CDSl 26371 - 26486 2.79 26371 - 26484 114 6 - 2 CDSf 27096 - 27153 0.00 27097 - 27153 57 7 + 1 CDSf 27154 - 27284 10.80 27154 - 27282 129 7 + 2 CDSi 27664 - 28018 40.35 27665 - 28018 354 7 + 3 CDSi 28050 - 28267 12.93 28050 - 28265 216 7 + 4 CDSi 28602 - 28638 -5.54 28603 - 28638 36 7 + 5 CDSi 28955 - 29197 26.62 28955 - 29197 243 7 + 6 CDSi 29557 - 29613 13.22 29557 - 29613 57 7 + 7 CDSi 29726 - 29806 0.86 29726 - 29806 81 7 + 8 CDSi 30639 - 30700 18.70 30639 - 30698 60 7 + 9 CDSl 31308 - 32307 115.60 31309 - 32307 999 7 + PolA 32949 -0.59 8 + 1 CDSf 33961 - 33987 -6.88 33961 - 33987 27 8 + 2 CDSi 37014 - 37826 55.79 37014 - 37826 813 8 + 3 CDSi 37939 - 38451 64.01 37939 - 38451 513 8 + 4 CDSi 38518 - 38820 53.99 38518 - 38820 303 8 + 5 CDSi 39023 - 39145 7.75 39023 - 39145 123 8 + 6 CDSi 39229 - 39653 39.28 39229 - 39651 423 8 + 7 CDSi 39800 - 39935 20.18 39801 - 39935 135 8 + 8 CDSl 40164 - 40460 22.18 40164 - 40460 297 8 + PolA 40537 -5.39 9 + 1 CDSf 40575 - 40744 21.82 40575 - 40742 168 9 + 2 CDSl 40820 - 41048 16.52 40821 - 41048 228 9 + PolA 41262 1.61 10 - PolA 44007 -0.59 10 - 1 CDSl 44200 - 44206 -6.06 44200 - 44205 6 10 - 2 CDSf 44263 - 44627 30.22 44265 - 44627 363 Predicted protein(s): >FGENESH: 1 4 exon (s) 87 - 3955 365 aa, chain + MENNDRNLPSEPMMRSEKEMGGNIIVSGKENMESKDSMRSCSNNVTVSSSDQYLSTSAGS PVNTSSEEKVVELKPQAHPETVCHSSDPSQALNHLQRNDHEEVANTAAMPLKLVGETQPM ISRSNVGNSSSNESKNEEQAVEKINPAETAVAANEDAECSSSSFDHFQNVDWVGNVLQVA DDKYYYQSCRINGFIYSVQDYALIRFENERLIPSKLLHIPSCTVTTGHSPGKKIPDILKA VSSHMSYIIIFVTTANYLDMDIHDSSGEASTSYVQAMWEDKKAGTKWVSINQCYFARELP QSVGRPCLENNNEVYLSTYSSIVMAGLIQGPCEVHPPRKFTEESERRARLAKGSNDVSQP LYICK >FGENESH: 2 3 exon (s) 4500 - 5353 152 aa, chain - MIKQVVGGLALNIFSAYAPQVGSEKEVKTHFWEDLDEVLFEEGEPLGGMERFQRQVEAKK VSNATLVDCKNEEKKRITRGKYKTIRHQDLGYCECIKVEEVEHAICRMNRKEVTCPNQIL VEFLKSTDMANMERARIVWSTIVPLCNNKGDI >FGENESH: 3 4 exon (s) 5941 - 8856 213 aa, chain + MESLFATYLVENEKPVATTFHFQPQVWEFESPRVQSVKRVTVDFWVEDGFMMNQKGYFVM SLVDRGQLIIIFLLQLLLARVFCQVCLWELKASPKAYGMESWRNVKRLTNWKSQYLSLGG RLTLINTVVDALASYMMSVFPLPANVSNSIDALGRNFLWQGNEDKKFHLVKWEELIVSKN TGGLGIRNFREQNQSLMMKWFWKFANEDNMLWE >FGENESH: 4 4 exon (s) 9042 - 10736 230 aa, chain + MKQLHPELFILCQCQQATVATVWTGQGWNLFQGGTFMTGRLDKVTEFQDSILTTTQDIFD VLIVYGQQFRLRLFTISGRGSREVTHLRYAVDTLVFSDAEELKLLRVFMVLFEGMSRLHI NWRKSFLYPINGVYEYGGFECKLSATPTKNYSRLWTPEGSNFTFRRQLNVGEIQRVAEFF TFLKFNGLQEGDDELGWQGSDNGSFKANNANKRTNHFGFCLRKQFLHMTI >FGENESH: 5 4 exon (s) 11746 - 12407 97 aa, chain + MVAKRVILGVTELSFRGLGVAAKRFCCSIGGHLTFVEEVSDGVQYLALGPICIILPVAIS KGEKSRLMNIIHPAKYEIKTSLLLAFYFQVSQFSTQL >FGENESH: 6 2 exon (s) 26371 - 27153 57 aa, chain - MILLTDNPGQRNWYQVSTREKKSVLGLKIVIQAKKRAEKCKKRQNPVACVLQDRRKP >FGENESH: 7 9 exon (s) 27154 - 32307 727 aa, chain + MATGIASGSGQLYLREHVYRRSSYGKAHCHSTVILSSMQNQIHWSSWISKLLQVDRSNYS QCQVKTNRKSHRGTIKSCQREGSTRYFDFAVIGSGIAGLRYALEVAKHGSVAVITKAEPH ESNTNYAQGGVSAVLCPKDSVENHMKDTIVAGAYLCDEEIVRFRKAVARFSAFFLFGDYF LSFSYFIPRLLGWMNRKIVDPSFRLKPKDLFVRRFLPQDVELQKLEKSNSSGGSRSICFL FFNENTKVVCTEGPERIRELIAMGASFDHGEDGNLHLAREGGHSHRRIVHAADMTGREIG RALLEAVVKDPNIYVFQHHFAIDLLTTQDGSDIVCHGIDTINTETQEVIRFISKVTLLAS GGAGHIYPSTTNPPVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIRPSNARENA FLITEAVRGDGGILYNLDMERFMPSYDERAELAPRDVVARSIDDQLKKRGEEYVLLDISH KPKEKILSHFPNIAAECLRYGLDITQQPIPVVPAAHYMCGGVRAGLEGETNVRGLYVAGE VACTGLHGANRLASNSLAEALVFARRAVKPSIDHMNLSKIGHSASNWWPRPVAPLLLGDT VVNKVIRQTREVRKELQSIMWEYVGIVRSTSRLTLAETRIIELELKWERYLFQHGWEPTM VGLEACEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPHVEESKRLPTVIFPSQLNSSRQ LHKQQIC >FGENESH: 8 8 exon (s) 33961 - 40460 878 aa, chain + MPLPSSNSQPLKYKIKKIPTHPIRFAVNFNNNFLKDFEKYVGDNVIQMFKDTIFGPFLDI SKCNFQGQITKCLLLLELEQSNPNVLHIRHSNGCVLKFGIDEFALLTGLKVRGNTNDFKY PEQTNCMLFKKYFSGAVNSVTKHQLVQRFKMGNWESNQDALQMSILFFIHTFVLATIDNT TISIVDFLMVEDGRYQHFPWGQLSFSKLIGSLRQDFDVSKKLYRLYGMPYALNVWIYECA SNLNSEIAVRERNVIPRICNWRVVSEKAKFEMLMSTIFQKNACSNIVPTAEEIEAFDIAQ VEHAHSTSISLVQPNEEHDLDDFSTKPPEQLLRTYSRVSDTSPPSPPKRRKKSIIQKKKV SEQKQPDQSNVSPTPDDDVHVSMSSLPQHSDVDDVHGSVPQVSPKSAADVHGSVPDVSQN PAADVHGYADSQNVNNIIPHIEELKGYLRNYVDKKFEELIILIKANHSQLMQSISKENIN FQDDTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAGDVYVDGVGVSV NEGEPIVSDNPKDGDAHQSHQDLNEHIMDQAVDDNVHHNIPHVLPEKIITDSSDSSTSTT ISPSTQAAIDALIKDLGKDATNARPLYSYDPKNITSSQYLLTDSQLPTEIPITEIAVKTD AVTPAHRNRMPSRRIQSPYCTSFGSSEKGKEKLKDMARLHFPFEGCGIADKVSPKLIEDY MNWLLRGLLKNHNNKNPSDDKYRSRSSSFGFMMMDFVVAFPMNKNWFYAMSQPNKCWSDE HIDVIFYYLRKKSKLCSMDQYRYTTTHCLFMSHVKNCYDRYYMDDDDDSLTTQEHIDRAS VVSVHERSIINIIKGFGIPAALPWHLVDEVYIPINCDQ >FGENESH: 9 2 exon (s) 40575 - 41048 132 aa, chain + MLPSYLLDNGFFEENERTKFADCQAYKDNNNGSLLEPQVPFMIEFAQDIPTQESDSLDCG LYVTAFAEYISDQINISYVDFNPDYLRQRYGALLWSYGSEKAKCGYVSDNDDPPKFRGVV TPPPEEDLVHIA >FGENESH: 10 2 exon (s) 44200 - 44627 123 aa, chain - MSVKLYFELKKNEPGFSIYPLCIDTIEKNSGTVHNFDGRSGEITCVEGTTNDTQALAIVE NSLFETHDNAEVGVANVIINSDIVDVKTGQIYKDKAILVDVMTKYKIKNNFNCKVKRSDQ QST