FGENESH 2.4 Prediction of potential genes in Nicotiana_dicot genomic DNA Time : Thu Dec 13 08:08:15 2007 Seq name: C08HBa0224O24.1 AP009412.1 htgs_phase:3 submitted_to_sgn_as:C08HBa0224O24 sequenced_by:kazusa Length of sequence: 85445 Number of predicted genes 21 in +chain 10 in -chain 11 Number of predicted exons 35 in +chain 15 in -chain 20 Positions of predicted genes and exons: Variant 1 from 1, Score:404.203857 G Str Feature Start End Score ORF Len 1 - PolA 30 -0.55 1 - 1 CDSo 184 - 261 5.34 184 - 261 78 2 - PolA 264 2.25 2 - 1 CDSo 360 - 635 59.49 360 - 635 276 3 + 1 CDSf 3047 - 3157 3.11 3047 - 3157 111 3 + 2 CDSl 3218 - 3460 28.40 3218 - 3460 243 3 + PolA 3742 2.25 4 - PolA 6229 0.75 4 - 1 CDSl 6327 - 6422 3.41 6327 - 6422 96 4 - 2 CDSf 7408 - 7590 4.52 7408 - 7590 183 5 + 1 CDSo 7981 - 8163 6.68 7981 - 8163 183 5 + PolA 8181 2.25 6 - PolA 9690 2.25 6 - 1 CDSl 9847 - 9855 -8.29 9847 - 9855 9 6 - 2 CDSf 9920 - 10030 12.28 9920 - 10030 111 7 + 1 CDSf 11721 - 11784 -2.32 11721 - 11783 63 7 + 2 CDSl 12057 - 12136 10.44 12059 - 12136 78 7 + PolA 12363 2.25 8 - PolA 12766 2.25 8 - 1 CDSo 12978 - 13091 2.73 12978 - 13091 114 9 - PolA 14063 2.25 9 - 1 CDSl 14106 - 14375 45.29 14106 - 14375 270 9 - 2 CDSi 14438 - 14508 3.03 14438 - 14506 69 9 - 3 CDSf 14538 - 14598 7.11 14539 - 14598 60 10 - PolA 14644 2.25 10 - 1 CDSl 14698 - 14783 16.16 14698 - 14781 84 10 - 2 CDSf 16012 - 16201 -4.86 16013 - 16201 189 11 + 1 CDSo 27952 - 28086 -1.18 27952 - 28086 135 11 + PolA 28119 2.25 12 - PolA 28494 2.25 12 - 1 CDSo 28787 - 28942 4.06 28787 - 28942 156 13 + 1 CDSo 29750 - 29914 14.90 29750 - 29914 165 13 + PolA 30027 2.25 14 - PolA 30297 0.75 14 - 1 CDSl 30402 - 30641 12.83 30402 - 30641 240 14 - 2 CDSf 30761 - 30868 -3.17 30761 - 30868 108 15 - PolA 34414 -0.55 15 - 1 CDSo 34419 - 34541 3.50 34419 - 34541 123 16 + 1 CDSf 46552 - 46616 -5.82 46552 - 46614 63 16 + 2 CDSl 47839 - 48253 52.24 47840 - 48253 414 16 + PolA 48480 2.25 17 + 1 CDSo 48811 - 49335 41.50 48811 - 49335 525 17 + PolA 49473 -2.05 18 + 1 CDSo 49731 - 49841 2.88 49731 - 49841 111 18 + PolA 49904 2.25 19 + 1 CDSo 49979 - 50290 24.37 49979 - 50290 312 19 + PolA 50407 -0.55 20 + 1 CDSf 66745 - 66843 4.47 66745 - 66843 99 20 + 2 CDSi 67469 - 67527 5.38 67469 - 67525 57 20 + 3 CDSl 67565 - 67715 7.07 67566 - 67715 150 20 + PolA 67755 -0.75 21 - PolA 67805 -6.85 21 - 1 CDSl 68004 - 68728 62.75 68004 - 68726 723 21 - 2 CDSi 68959 - 69067 7.73 68960 - 69067 108 21 - 3 CDSi 69149 - 69163 0.30 69149 - 69163 15 21 - 4 CDSf 70755 - 70814 0.20 70755 - 70814 60 Predicted protein(s): >FGENESH: 1 1 exon (s) 184 - 261 25 aa, chain - MSTIVTKSFLQKRRNMFLSKKYFLW >FGENESH: 2 1 exon (s) 360 - 635 91 aa, chain - METSGGDERNVEENGRRKFVEEVYDDDDDSSSEDTGPDPDVNIVEEEEDNDPDIVIIADE EVKTKPDIVNVAEEKEEEDEDEDEESDPDAT >FGENESH: 3 2 exon (s) 3047 - 3460 117 aa, chain + MGLKRNGLLLWISHHGLTRNGLSLWIYEKLTNEKWLDEEEVETEPDVVVVTEEEVESDPD VVNVAEEENVETKPNVFNIEEEEEGPKVIIVTKEQEETEPDVVTLRRKRRRRVRRRK >FGENESH: 4 2 exon (s) 6327 - 7590 92 aa, chain - MSYSRHKSHLGYWEPGDFFWTPIYDVDGFGELWDIHYFNGKFYVITSTGVWVIDEDYELQ LLCFVVDPVDCHKKRGSGVNTRTTVNLQLYPW >FGENESH: 5 1 exon (s) 7981 - 8163 60 aa, chain + MKSSINVTRFAIVSSKSCGSNDQFTIARAKENSNFSFRDFALEEIYVSWGKSNALLGWGN >FGENESH: 6 2 exon (s) 9847 - 10030 39 aa, chain - MTRWARAMRGHHPSSILEERVSKASTCQLGDIRRKIETT >FGENESH: 7 2 exon (s) 11721 - 12136 47 aa, chain + MSFKLMHQFGDKILHLNIKIGGSVSCLLQDIPPSMSCREKMLNLPHV >FGENESH: 8 1 exon (s) 12978 - 13091 37 aa, chain - MPLYFASLEVPPPLLFLPFPRSVYVVLLLFDELLCYF >FGENESH: 9 3 exon (s) 14106 - 14598 133 aa, chain - MGEGSSVQELLSTSQIRLLSKETDPDVDIVAEEEEEKMETDLDVEKKEESYPDAVIVTKK EVVETDPNVDNVVEKEKVETDPDVVSVAEEGDDDEESHPDFCIVTEEDEVKSDPDDVNVA EEEEKVETEPDVH >FGENESH: 10 2 exon (s) 14698 - 16201 91 aa, chain - MYEHINSCLCSNSPITQDILILLGKFGAKNISQKTLTSEIVLWPTTVIRVVQNRNRQSKP ILLGEEDGFRGRVFFNEENYTTIYKTYGGDS >FGENESH: 11 1 exon (s) 27952 - 28086 44 aa, chain + MYNYKRLRQIRKSTAKKKKYCDKEEKVKEIKKEKNMKINIEGKK >FGENESH: 12 1 exon (s) 28787 - 28942 51 aa, chain - MIRRPYPDTRTRFLYFCNNTIKQRFNRENLPNSKKGKPHRIFILIKVLQLS >FGENESH: 13 1 exon (s) 29750 - 29914 54 aa, chain + MSKYLSLRTHIRWRGSQNNIDHLIMAFSVPTQCKSNNQAEAIAALYAIEWCHRP >FGENESH: 14 2 exon (s) 30402 - 30868 115 aa, chain - MIKGYNQTEYKMRYLQSKLLSLEMSLFVNEQKLLDSNAKERPKLSEVVEILTKAVQESQE ITFIEATSAGASKPTQLSLPKQLKKKIVSETTRQMIPLAQASLLKYGLYNLLKIS >FGENESH: 15 1 exon (s) 34419 - 34541 40 aa, chain - MGLNLGRTKLGFLCWASHCETPLIVLSKWAWPARRVKPNP >FGENESH: 16 2 exon (s) 46552 - 48253 159 aa, chain + MGLKIICPIQETLFTPAQIRAMCIFGFRDDGSGSRWFCQKCKCPITKTRYTACECGCKTW VNDGTNEKCLIVDSPLASPPLNNKGLILLSDEGESEEDYEVVGRKRRMVELTESENNNKG QTYFLRPHCMEKSKSKNEEESDDEESDEEGSDYKECKCS >FGENESH: 17 1 exon (s) 48811 - 49335 174 aa, chain + MWDLVSQNIKVAMNPHQYGGFKFMWKHIAGAIKFQRLREPLSKSRGGCIISHPPGTGKTR LNIVFLQSLLKIYPKSRLAIIAPSSLLINWETEFHKWEVKIPFYNLNSKNFSSQEEEATV RVFRYLSDAGRKDNQPIRLLKLKSWDGTNSVLGISYDLFRNLTVKNVDVNDNVI >FGENESH: 18 1 exon (s) 49731 - 49841 36 aa, chain + MDSRDDGSGSRWFCQSCKFALPKQDTQLVNVGVKHG >FGENESH: 19 1 exon (s) 49979 - 50290 103 aa, chain + MVEPTESENHSKGQTYFLRPRYINKSKNKNEDKSDDEELDKEGSDYEECKFSYKEECDDR NEVIFLEEKEHIFIKENLFLVFRFEEEEPILAEKEEWEKESCS >FGENESH: 20 3 exon (s) 66745 - 67715 102 aa, chain + MANHKLKLDEQIGHIRLVCLHVILEMKYISPYFVLRKKCTPCTDGEAEILCKKILTGEYG EANKKEIREILLKFPSLVVCKEGHTARYENNLVWKALKKVEI >FGENESH: 21 4 exon (s) 68004 - 70814 302 aa, chain - MEIDNLVIESMVQLNGFTVQEKGFQVRKMDSGDDFISKSRTRQLSLKHMVEKVEKRNELS KIIAPSNLLLNWEIEFQKCMVDIPFHNLNNKNFFLKEDEGTVCVFHCLSGPAKKNPHIVW MAKLKSWAKSKIVLGIRYDLFRILTGEDGDGYNKELREILLKFPSLLVCKEGHTAQNENN LVWKALKKVETQKRVLLSQTPFQNKIKELYNTLCAVSPKIAADLEQKWASLSSSIDKNAR ALEELRDICSLSVHKYSENVKKVTLAGIRDTIIHLKPTELQKELLKRVPENLGSFYEQNV IL