FGENESH 2.4 Prediction of potential genes in Nicotiana_dicot genomic DNA Time : Fri Feb 9 17:25:01 2007 Seq name: C08HBa0298D02.1 submitted_to_sgn_as:C08HBa0298D02 Length of sequence: 96653 Number of predicted genes 38 in +chain 15 in -chain 23 Number of predicted exons 73 in +chain 25 in -chain 48 Positions of predicted genes and exons: Variant 1 from 1, Score:589.642676 G Str Feature Start End Score ORF Len 1 + 1 CDSi 71 - 144 9.57 73 - 144 72 1 + 2 CDSl 280 - 714 51.27 280 - 714 435 1 + PolA 1531 2.25 2 - PolA 2219 2.25 2 - 1 CDSo 2283 - 2387 -0.80 2283 - 2387 105 3 + 1 CDSf 3646 - 3747 12.21 3646 - 3747 102 3 + 2 CDSl 4153 - 4173 -5.65 4153 - 4173 21 3 + PolA 4322 -0.55 4 - PolA 5459 0.75 4 - 1 CDSl 5547 - 5671 4.20 5547 - 5669 123 4 - 2 CDSf 6307 - 6418 3.89 6308 - 6418 111 5 + 1 CDSo 6533 - 6727 0.43 6533 - 6727 195 5 + PolA 6792 0.75 6 - PolA 6799 -2.85 6 - 1 CDSl 6885 - 6956 -1.25 6885 - 6956 72 6 - 2 CDSf 7051 - 7071 8.89 7051 - 7071 21 7 - PolA 7325 0.75 7 - 1 CDSl 7396 - 7520 0.19 7396 - 7518 123 7 - 2 CDSf 7709 - 7751 3.35 7710 - 7751 42 8 - PolA 7906 2.25 8 - 1 CDSo 8122 - 8394 9.63 8122 - 8394 273 9 + 1 CDSo 8509 - 8679 2.95 8509 - 8679 171 9 + PolA 8721 0.75 10 - PolA 8841 0.75 10 - 1 CDSo 8854 - 8955 9.44 8854 - 8955 102 11 - PolA 9864 2.25 11 - 1 CDSl 9998 - 10015 -2.66 9998 - 10015 18 11 - 2 CDSf 10266 - 10310 9.50 10266 - 10310 45 12 + 1 CDSo 10602 - 10712 -0.40 10602 - 10712 111 12 + PolA 10843 2.25 13 - PolA 11149 -0.75 13 - 1 CDSl 11335 - 11474 17.04 11335 - 11472 138 13 - 2 CDSf 11772 - 11847 0.77 11773 - 11847 75 14 - PolA 39208 -0.55 14 - 1 CDSo 39237 - 39464 12.09 39237 - 39464 228 15 - PolA 39514 0.75 15 - 1 CDSl 39820 - 39954 8.26 39820 - 39954 135 15 - 2 CDSi 40047 - 40238 18.72 40047 - 40238 192 15 - 3 CDSi 40484 - 40773 10.26 40484 - 40771 288 15 - 4 CDSf 42621 - 42738 4.53 42622 - 42738 117 16 + 1 CDSf 44307 - 44451 6.91 44307 - 44450 144 16 + 2 CDSl 46041 - 46255 4.92 46043 - 46255 213 16 + PolA 46366 2.25 17 + 1 CDSf 46824 - 48039 105.19 46824 - 48038 1215 17 + 2 CDSl 48134 - 48180 1.51 48136 - 48180 45 17 + PolA 48264 -2.25 18 - PolA 49173 0.75 18 - 1 CDSo 49237 - 49314 2.49 49237 - 49314 78 19 - PolA 49368 0.75 19 - 1 CDSo 49439 - 49525 2.44 49439 - 49525 87 20 - PolA 50154 2.25 20 - 1 CDSo 50412 - 50519 0.23 50412 - 50519 108 21 + 1 CDSf 51182 - 51406 26.72 51182 - 51406 225 21 + 2 CDSl 51712 - 51741 -0.25 51712 - 51741 30 21 + PolA 51803 0.75 22 - PolA 59314 0.75 22 - 1 CDSo 59351 - 59485 14.30 59351 - 59485 135 23 + 1 CDSf 60616 - 60744 8.96 60616 - 60744 129 23 + 2 CDSi 61769 - 61889 8.37 61769 - 61888 120 23 + 3 CDSl 63864 - 64033 8.74 63866 - 64033 168 23 + PolA 64371 2.25 24 + 1 CDSo 65379 - 65630 16.75 65379 - 65630 252 24 + PolA 65928 2.25 25 + 1 CDSf 65938 - 65983 -4.69 65938 - 65982 45 25 + 2 CDSl 66300 - 66454 6.93 66302 - 66454 153 25 + PolA 66525 2.25 26 - PolA 68065 -2.25 26 - 1 CDSl 68082 - 68474 9.86 68082 - 68474 393 26 - 2 CDSi 68819 - 69068 9.97 68819 - 69067 249 26 - 3 CDSf 69126 - 69154 -3.80 69128 - 69154 27 27 + 1 CDSo 69266 - 69397 6.75 69266 - 69397 132 27 + PolA 69494 -0.55 28 - PolA 69722 2.25 28 - 1 CDSo 69877 - 69999 0.20 69877 - 69999 123 29 - PolA 70782 0.75 29 - 1 CDSo 70811 - 71053 10.72 70811 - 71053 243 30 + 1 CDSo 74140 - 74256 7.20 74140 - 74256 117 30 + PolA 74270 0.75 31 - PolA 82166 2.25 31 - 1 CDSl 82226 - 82381 -2.91 82226 - 82381 156 31 - 2 CDSi 83406 - 83495 10.63 83406 - 83495 90 31 - 3 CDSi 83657 - 83730 -2.82 83657 - 83728 72 31 - 4 CDSf 83864 - 83960 5.74 83865 - 83960 96 32 + 1 CDSo 86161 - 86463 41.91 86161 - 86463 303 32 + PolA 86492 2.25 33 + 1 CDSf 86833 - 86948 7.66 86833 - 86946 114 33 + 2 CDSi 87212 - 87352 -0.17 87213 - 87350 138 33 + 3 CDSl 88756 - 88954 8.76 88757 - 88954 198 33 + PolA 88996 0.75 34 - PolA 89087 -0.55 34 - 1 CDSo 89113 - 89319 6.49 89113 - 89319 207 35 - PolA 89575 0.75 35 - 1 CDSl 89674 - 89720 0.89 89674 - 89718 45 35 - 2 CDSi 89758 - 89873 22.21 89759 - 89872 114 35 - 3 CDSi 90638 - 90727 4.01 90640 - 90726 87 35 - 4 CDSf 90949 - 90998 4.72 90951 - 90998 48 36 - PolA 91043 -3.15 36 - 1 CDSo 91085 - 91387 22.70 91085 - 91387 303 37 - PolA 91576 0.75 37 - 1 CDSl 91797 - 92019 18.77 91797 - 92018 222 37 - 2 CDSi 92139 - 92210 13.33 92141 - 92209 69 37 - 3 CDSi 92859 - 92909 1.08 92861 - 92908 48 37 - 4 CDSi 92989 - 93076 2.89 92991 - 93074 84 37 - 5 CDSi 93169 - 93292 10.97 93170 - 93292 123 37 - 6 CDSi 93546 - 93618 7.85 93546 - 93617 72 37 - 7 CDSi 93713 - 93773 4.61 93715 - 93771 57 37 - 8 CDSi 94706 - 94958 14.70 94707 - 94958 252 37 - 9 CDSf 95009 - 95065 7.63 95009 - 95065 57 38 - PolA 95745 -2.85 38 - 1 CDSl 95752 - 95873 9.45 95752 - 95871 120 38 - 2 CDSf 96011 - 96047 3.32 96012 - 96047 36 Predicted protein(s): >FGENESH: 1 2 exon (s) 71 - 714 168 aa, chain + PQGISQVACDSKPDRLSVAELYNKMCLVLSGNVQDSFNESHPSSGMKKNILPLEAICQQM NQILSSPQQNTPNFGRKLVQEDRNSEASKSSYPVPSSQVDDRVLNAEKEHDSVLKKPESG SKSASSCTVASMTENHHNVTPAVLETRPSSTSTGDDDIEMVDISTSNA >FGENESH: 2 1 exon (s) 2283 - 2387 34 aa, chain - MVPKSLFGNVVEKSITFILIKNKRCLRISETTLK >FGENESH: 3 2 exon (s) 3646 - 4173 40 aa, chain + MLVTTIDNNDAEEEKKGAWRWCYWWLWVDGGGGKHNLFSS >FGENESH: 4 2 exon (s) 5547 - 6418 78 aa, chain - MHEKLGNLAVLRKGLVKVEMSVKNSVSIPESFLTNYGEVLIKYLKYFEKKNLGAPCDRSM GQYARKIVEFGWYLKKGL >FGENESH: 5 1 exon (s) 6533 - 6727 64 aa, chain + MTISAFNTPFLRTSQILRFLVNAHQSGGRNIQFVFSKNVMRISIMSWGILTLLRLLLPYL QALL >FGENESH: 6 2 exon (s) 6885 - 7071 30 aa, chain - MACKCRNGFISMGYYTRKIRKFRQLLKKVL >FGENESH: 7 2 exon (s) 7396 - 7751 55 aa, chain - MDGKCGMSVKNIHEGTHKILCEKNFKFCGRQIHSHEKLRNLRGSLKRTCKWKNGR >FGENESH: 8 1 exon (s) 8122 - 8394 90 aa, chain - MEVLIKIFVKKKFECSERQIYGLIHTQDQENWVVLKKELVNPKMDIKNVVSLHEGSQTHY ESLHRILEKNISSAPKVKSMGKNTHKKLEN >FGENESH: 9 1 exon (s) 8509 - 8679 56 aa, chain + MDLASGTPNFFLKQLFEDLHNDLKNLHVYSYHFCDAHFLFYNPFFKKPPKFPDFSC >FGENESH: 10 1 exon (s) 8854 - 8955 33 aa, chain - MVWVYVKVPQLISEVNKKFFENFFGALGVLSMG >FGENESH: 11 2 exon (s) 9998 - 10310 20 aa, chain - MYHLVNKKRSGQMEKGVCDR >FGENESH: 12 1 exon (s) 10602 - 10712 36 aa, chain + MTVVVATKFERHDFVIPRVSTTIERIDEDATTKGFD >FGENESH: 13 2 exon (s) 11335 - 11847 71 aa, chain - MERIGSLDCINNRCKGPNLIREVWIWNVGMDSAVNISSSGTTSAAFRNEVGWHNLSLSND TKVKPNTPGLE >FGENESH: 14 1 exon (s) 39237 - 39464 75 aa, chain - MKHFPNEFLIEPWEFKGQLEAMVKTKPERHAGHSRLHSLSILLAKQRFNLLKHYCVTIYL VECNGFGLRGYYLGA >FGENESH: 15 4 exon (s) 39820 - 42738 244 aa, chain - MAPAKRKIVTTDTIKIQKEARTKIPRKNNENTTLFEELPYQGTTHCRRCCGFLCEKFKKQ DNDSIKYLQTLSRPVNEFKNKRGGGVKGILSKSVQHPHTPQAKRGKSFTNVIQNLKKKMF EELSMPIIEEVKDYKKYIDEILNLMRQRHETYPYYYDPKDITKVFSLTSAKDVQKRYDMH VFKGQDFRNMTNTSVWWEDWYIDEILNLMRQRHETYSYYYDPKDRILDPNFYTNFQKRYK ELNN >FGENESH: 16 2 exon (s) 44307 - 46255 119 aa, chain + MEVSITIYMDINIIYQVSRQFTSYTNTFHSANDFILIFRNNTSITTSSGIITSLFNFYIY KTFYYSLIQEKQFENNLSILSRLRFQFKKKRESRLEIRRKMMEIVGKEDNGDSVVEFLD >FGENESH: 17 2 exon (s) 46824 - 48180 420 aa, chain + MDQAMAAIIRNRPFESSIPQSIWTVETVSQVLRSIPRFLFQSPRSIGRQNGFRHRTPLKQ RNLKQELHNARKGVLILGPAAHRDVQKVQLGLEKALEFFHWVETRCGFTHNELTCREMSL VLAKGSCNSKFLWEFLRRMSRRGLLTTPTVTCLIKCLGEEGLVNEALTTFYRMKQFHCMP DVYAYNTLIFALCRVGNFKKAKFLMEQMELPGFRCPPDVFTYTILISSYCRYGTETGCRK AIRRRIWEANHLFRIMLFKGFVPDVVTYNCLINGCCKTNRIERALELLDDMVKRGVVPNR ITYNSFIRYYSVTNEIDKAIEMLRRMQGMNHGVVLPCNSSYTPIIHAMCETGRVVEARDL LVEVAEQGSIPREYTYKLVRDALESSGKIDLLDEELCTRLEDGIKDSSKMLMVVCWILRK >FGENESH: 18 1 exon (s) 49237 - 49314 25 aa, chain - MAVTTASFVIKPNLSKRLKDTMTRN >FGENESH: 19 1 exon (s) 49439 - 49525 28 aa, chain - MGKSHNKLKLLQKRAKEEKKLSNSNAFE >FGENESH: 20 1 exon (s) 50412 - 50519 35 aa, chain - MGGIYSSRERKEKSQRRSMKVQGIHRCTSPLLFMG >FGENESH: 21 2 exon (s) 51182 - 51741 84 aa, chain + MSDAGIKYILATQPQFLVPSRNQAIQMSHMLSADLNTFKRLPQLESTITIHIVIHLASSR PYLLSNSFLLPYLVQRVLTLRQGP >FGENESH: 22 1 exon (s) 59351 - 59485 44 aa, chain - MMEVEGNGETKTMIEIEVKYPEKKRGKRWMYNGGNDWCGGGSDR >FGENESH: 23 3 exon (s) 60616 - 64033 139 aa, chain + MSCGMLLSACIVTLPTFKSCKYSSIRSVSQQDTVEKEKYKHIIKETRKSRLSISQTWKRV NNLKDDSFEKNLLGLGVAPQLSVDHHHIEWVAINAPYFHLENPKFMARDSTHDNRASCNN FKFIVSQAQKAVFGCTSYD >FGENESH: 24 1 exon (s) 65379 - 65630 83 aa, chain + MQIAPLDQHLSNNLVTRLTILCCNTSSGSGKWGLAKTIVGGVNGEGVVDHARPHKEWSEW LSGMNYSINTQPLTKTTQFEASS >FGENESH: 25 2 exon (s) 65938 - 66454 66 aa, chain + MLICDQTTPGIGRGCNQLSTIAWNKFVPVGDTTKANSSTPETLERAYSTLLSTPLLYFLF DKVWRE >FGENESH: 26 3 exon (s) 68082 - 69154 223 aa, chain - MYSHFQKGHRLSKVFTHFCAFFAEVKTQFNASVRTLRSENSKEYMSEFFQSYLRQYGILC QSSCADIPSQNGVTERKNKYLFEIAQTLLFQMKENEWLVYVVTHILTKQSDVSPLALILS INHHLTVVTLVPNPCVEARPLIFQVYSRRCTGLASVWSPYPSENLDFPIDLCKGTHTCKF KYSIANFVSYDRLSSTSRSLIAFLDSIFVPKIVKGGFEPSKIF >FGENESH: 27 1 exon (s) 69266 - 69397 43 aa, chain + MKKYSEIEDKAFSIEVERDEPIGNVLQMETRYMSRLYTEDPVH >FGENESH: 28 1 exon (s) 69877 - 69999 40 aa, chain - MTCWCGENHWDNILVLNFGNFSSTLIGELWQFLYCSYLIK >FGENESH: 29 1 exon (s) 70811 - 71053 80 aa, chain - MVGYMSIDNLYHTKDCINTSPVLALLDVTKNFVVKIDASGYGIGLVLIQEGHPIISKALY PTYFLVYVCSRIISHSPGCT >FGENESH: 30 1 exon (s) 74140 - 74256 38 aa, chain + MARLGSNSNFGSDMGVRVWFRIECSGQVLNLLLRLIFK >FGENESH: 31 4 exon (s) 82226 - 83960 138 aa, chain - MNGFRKGKVRSKGYLGEVIRNDMMQFQLFCLEVWRCQNLTMNGFMRGKVWSKDYLGEKCL DASVWRCQKLTMNGFRRGKVRSDYLGELTEDMTSDRRLKRIQFKIVGIVNNNVLLSPHKL HSRYDMTNRILRDPEKSN >FGENESH: 32 1 exon (s) 86161 - 86463 100 aa, chain + MELTADELKAYDGSDPSKPIYVAIKGRIFDVSAGNSFYGPGGPYCMFAGKDASRALAKMS KNEEDVSPSLDGLSEKEMAVLNDWETKFEAKYSIVGNVIS >FGENESH: 33 3 exon (s) 86833 - 88954 151 aa, chain + MNKKNIPSFSFHSPKELPHSRLQTSGWKAHSNSQSLGWKFRLSYYLILSNYQLLLDSFKK LTASTKMCYLSSAKDQFIDESYKLCWDGARNERIRDEVLICIKIRDWAKKIGCGGWRRRK IRDRGTEEILVPTWCFASSLEFRINSDSSLK >FGENESH: 34 1 exon (s) 89113 - 89319 68 aa, chain - MEWAKSFIGCVHYYWSRECKFWEDLSFLKMEIVVDEVIKLVEHDFVLAVIIYNLKIYLLS RRIESAII >FGENESH: 35 4 exon (s) 89674 - 90998 100 aa, chain - MEAHKDGNVTVEVLQERSGSLSSISQAPAGLCLNTLLSVLVDGSEGGASLKSYAHEDISI GSWMMGLQTTYIDDSRLCCSTTTSQDLSILARILVNVFVD >FGENESH: 36 1 exon (s) 91085 - 91387 100 aa, chain - MEGGDSGKVWVIKPMQYRGSFRTLDREYGGQSELYGSLWKKMCSTKLEMATRLSSGEMDG LIKFLLVSYCQIFIQSATILKPEYMNAGQLKAGTCLSGDY >FGENESH: 37 9 exon (s) 91797 - 95065 333 aa, chain - MTETKDADSGRQANGFRMQTYTSMCRPLLDLTLASCMFSRDLERRIVEVEMELTVAKSQG YLQNQLKQSSSSSGKQFLAVIGIYTGFGGRLRRNVIRGSWFPNVDALSKLEARGVLVRFV VGRSPNRGDSLDRNINEENRATKDFLILGSHEEAHEELPKKAKYFFSSAIQTWDAEFYVK VDDNIDVDLDGLIELLQKRRGQNSSYIGCMKSGEVVSEEGKSWYEPEWWKFGDEKSYFRH AAGSVVVLSKNLAQYININRVGDKIGNIKKCSHLIYADDTIILSEPEGEQLNYIRLILIL FEAVSGLSVNWKKQSDPSRGGASDSRIGKHSGM >FGENESH: 38 2 exon (s) 95752 - 96047 52 aa, chain - MATMATKGRGEKDFSGDQPDFFGDLKWTKPLPRGKVYNPRLRTKGERLGLNQ