GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 23:40:20 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-J6Qsd/C08HBa0197J17/C08HBa0197J17.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0197J17.1, from 1 to 118343, both strands analyzed. ... started at: Tue Aug 29 00:02:18 2006 EST library file: /tmp/cxgn-bacpublish-resources-prh3Ag/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 6 HitsTableSize = 68 EST library file: /tmp/cxgn-bacpublish-resources-prh3Ag/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 75 ******************************************************************************** EST sequence 71 -strand 505 n (File: SGN-E228234-) 1 CATATATTAT AGATACAAGA GACATGTCTT CCTAACTTTA TACGACTGAT AGAAGTACCA 61 AACGGACTTG ATAGTGAAAA TCATAAATTG ATGAAAGGAG CCACCTCCCT ACTGAGGCAC 121 CACAATGTAA AACAAGCACA AGTCATACTA GGGCTGTGTA TCGGCCGGTT CGGTTCGATT 181 TTGAAGTTTA TCGGGTTGAC TAATTGGTTA TCCGTTTGTA GTGATGCTAA ACCATTATAG 241 AACCATTAAG ATATTGGCTT ATCGGTTATT GGTTTATCGA TTTTTGATCG TTATCTGTTC 301 GGTTATCGGT TTAACCGTTA AGATTTGACC CAAAAGAAAA AATATTGAAA ATCACGTAGA 361 AACAAGGTGA CAAACCAAAT AAACCATGCA CTTGAGTTCA CAAGTTACAT CTTGCTCAAA 421 AGCAAGCACT TTTACATCGT AGAATAATCA AGTGTTTGAG ACAACCAAAA ATAAAAGTAG 481 GAAATTAAAC TCCAAGTCGA GGAAT Predicted gene structure (within gDNA segment 1007 to 7290): Exon 1 5624 5927 ( 304 n); cDNA 149 462 ( 314 n); score: 0.747 MATCH C08HBa0197J17.1+ SGN-E228234- 0.747 304 0.602 C PGS_C08HBa0197J17.1+_SGN-E228234- (5624 5927) Alignment (genomic DNA sequence = upper lines): TAAGTGTCTG TTATGATCGA TTTGGTTCGA TTTTAAAGTT TATCAGTTTG GCTTATTGGT 5683 || | | || | | || || ||||||| |||| ||||| |||| | ||| || |||||| TAGGGCTGTG TATCGGCCGG TTCGGTTCGA TTTTGAAGTT TATCGGGTTG ACTAATTGGT 208 TATCGATTTG TAGTGATGTT AAATCGTTAT ATAACCATTG AGATATTGAC TTATTAATTA 5743 |||| |||| |||||||| | ||| | |||| | ||||||| |||||||| | |||| ||| TATCCGTTTG TAGTGATGCT AAACCATTAT AGAACCATTA AGATATTGGC TTATCGGTTA 268 TTGG-TTAT- -TTATTTG-T CGATTTTTTA TC-GTTATCG ATTTAACCGC TAAGATTT-A 5797 |||| |||| | |||| | || | | | || ||||||| |||||||| |||||||| | TTGGTTTATC GATTTTTGAT CGTTATCTGT TCGGTTATCG GTTTAACCGT TAAGATTTGA 328 ATCAAAA-AT AAAATA---A AAATCACTTA GATACAAGGT GACAAACCAA ATGAACCATG 5853 ||||| | |||||| | ||||||| || || ||||||| |||||||||| || ||||||| CCCAAAAGAA AAAATATTGA AAATCACGTA GAAACAAGGT GACAAACCAA ATAAACCATG 388 CAAACGAGTT CACAAGTTAC ATCTTGCTCA AAAGCAAACA TTTTTACAGT GTAGAATTAC 5913 || ||||| |||||||||| |||||||||| ||||||| || ||||||| ||||||| | CACTTGAGTT CACAAGTTAC ATCTTGCTCA AAAGCAAGCA CTTTTACATC GTAGAATAAT 448 CAAGTGCTTG AGAC 5927 |||||| ||| |||| CAAGTGTTTG AGAC 462 hqPGS_C08HBa0197J17.1+_SGN-E228234- (5624 5927) ******************************************************************************** EST sequence 129 -strand 504 n (File: SGN-E240450-) 1 ATATATTATA GATCCAAGAG ACATGTCTTC CTAACTTTAT ACGACTGATA GAAGTACCAA 61 ACGGACTTGA TAGTGANAAT CATAAATTGA TGAAAGGAGC CACCTCCCTA CTGAGGCACC 121 ACAATGTAAA ACAAGCACAA GTCATACTAG GGCTGTGTAT CGGCCGGTTC GGTTCGATTT 181 TGAAGTTTAT CGGGTTGACT AATTGGTTAT CCGTTTGTAG TGATGCTAAA CCATTATAGA 241 ACCATTAAGA TATTGGCTTA TCGGTTATTG GTTTATCGAT TTTTGATCGT TATCTGTTCG 301 GTTATCGGTT TAACCGTTAA GATTTGACCC AAAAGAAAAA ATATTGAAAA TCACGTAGAA 361 ACAAGGTGAC AAACCAAATA AACCATGCAC TTGAGTTCAC AAGTTACATC TTGCTCAAAA 421 GCAAGCACTT TTACATCGTA GAATAATCAA GTGTTTGAGA CAACCAAAAA TAAAAGTAGG 481 AAATTAAACT CCAAGAAGAG GAAT Predicted gene structure (within gDNA segment 1017 to 7290): Exon 1 5624 5927 ( 304 n); cDNA 148 461 ( 314 n); score: 0.747 MATCH C08HBa0197J17.1+ SGN-E240450- 0.747 304 0.603 C PGS_C08HBa0197J17.1+_SGN-E240450- (5624 5927) Alignment (genomic DNA sequence = upper lines): TAAGTGTCTG TTATGATCGA TTTGGTTCGA TTTTAAAGTT TATCAGTTTG GCTTATTGGT 5683 || | | || | | || || ||||||| |||| ||||| |||| | ||| || |||||| TAGGGCTGTG TATCGGCCGG TTCGGTTCGA TTTTGAAGTT TATCGGGTTG ACTAATTGGT 207 TATCGATTTG TAGTGATGTT AAATCGTTAT ATAACCATTG AGATATTGAC TTATTAATTA 5743 |||| |||| |||||||| | ||| | |||| | ||||||| |||||||| | |||| ||| TATCCGTTTG TAGTGATGCT AAACCATTAT AGAACCATTA AGATATTGGC TTATCGGTTA 267 TTGG-TTAT- -TTATTTG-T CGATTTTTTA TC-GTTATCG ATTTAACCGC TAAGATTT-A 5797 |||| |||| | |||| | || | | | || ||||||| |||||||| |||||||| | TTGGTTTATC GATTTTTGAT CGTTATCTGT TCGGTTATCG GTTTAACCGT TAAGATTTGA 327 ATCAAAA-AT AAAATA---A AAATCACTTA GATACAAGGT GACAAACCAA ATGAACCATG 5853 ||||| | |||||| | ||||||| || || ||||||| |||||||||| || ||||||| CCCAAAAGAA AAAATATTGA AAATCACGTA GAAACAAGGT GACAAACCAA ATAAACCATG 387 CAAACGAGTT CACAAGTTAC ATCTTGCTCA AAAGCAAACA TTTTTACAGT GTAGAATTAC 5913 || ||||| |||||||||| |||||||||| ||||||| || ||||||| ||||||| | CACTTGAGTT CACAAGTTAC ATCTTGCTCA AAAGCAAGCA CTTTTACATC GTAGAATAAT 447 CAAGTGCTTG AGAC 5927 |||||| ||| |||| CAAGTGTTTG AGAC 461 hqPGS_C08HBa0197J17.1+_SGN-E240450- (5624 5927) ******************************************************************************** EST sequence 141 -strand 440 n (File: SGN-E241852-) 1 ACTTGATAGT GAAAATCATA AATTGATGAA AGGAGCCACC TCCCTACTGA GGCACCACAA 61 TGTAAAACAA GCACAAGTCA TACTAGGGCT GTGTATCGGC CGGTTCGGTT CGATTTTGAA 121 GTTTATCGGG TTGACTAATT GGTTATCCGT TTGTAGTGAT GCTAAACCAT TATAGAACCA 181 TTAAGATATT GGCTTATCGG TTATTGGTTT ATCGATTTTT GATCGTTATC TGTTCGGTTA 241 TCGGTTTAAC CGTTAAGATT TGACCCAAAA GAAAAAATAT TGAAAATCAC GTAGAAACAA 301 GGTGACAAAC CAAATAAACC ATGCACTTGA GTTCACAAGT TACATCTTGC TCAAAAGCAA 361 GCACTTTTAC ATCGTAGAAT AATCAAGTGT TTGAGACAAC CAAAAATAAA AGTAGGAAAT 421 TAAACTCCAA GTCGAGGAAT Predicted gene structure (within gDNA segment 1657 to 7290): Exon 1 5624 5927 ( 304 n); cDNA 84 397 ( 314 n); score: 0.747 MATCH C08HBa0197J17.1+ SGN-E241852- 0.747 304 0.691 C PGS_C08HBa0197J17.1+_SGN-E241852- (5624 5927) Alignment (genomic DNA sequence = upper lines): TAAGTGTCTG TTATGATCGA TTTGGTTCGA TTTTAAAGTT TATCAGTTTG GCTTATTGGT 5683 || | | || | | || || ||||||| |||| ||||| |||| | ||| || |||||| TAGGGCTGTG TATCGGCCGG TTCGGTTCGA TTTTGAAGTT TATCGGGTTG ACTAATTGGT 143 TATCGATTTG TAGTGATGTT AAATCGTTAT ATAACCATTG AGATATTGAC TTATTAATTA 5743 |||| |||| |||||||| | ||| | |||| | ||||||| |||||||| | |||| ||| TATCCGTTTG TAGTGATGCT AAACCATTAT AGAACCATTA AGATATTGGC TTATCGGTTA 203 TTGG-TTAT- -TTATTTG-T CGATTTTTTA TC-GTTATCG ATTTAACCGC TAAGATTT-A 5797 |||| |||| | |||| | || | | | || ||||||| |||||||| |||||||| | TTGGTTTATC GATTTTTGAT CGTTATCTGT TCGGTTATCG GTTTAACCGT TAAGATTTGA 263 ATCAAAA-AT AAAATA---A AAATCACTTA GATACAAGGT GACAAACCAA ATGAACCATG 5853 ||||| | |||||| | ||||||| || || ||||||| |||||||||| || ||||||| CCCAAAAGAA AAAATATTGA AAATCACGTA GAAACAAGGT GACAAACCAA ATAAACCATG 323 CAAACGAGTT CACAAGTTAC ATCTTGCTCA AAAGCAAACA TTTTTACAGT GTAGAATTAC 5913 || ||||| |||||||||| |||||||||| ||||||| || ||||||| ||||||| | CACTTGAGTT CACAAGTTAC ATCTTGCTCA AAAGCAAGCA CTTTTACATC GTAGAATAAT 383 CAAGTGCTTG AGAC 5927 |||||| ||| |||| CAAGTGTTTG AGAC 397 hqPGS_C08HBa0197J17.1+_SGN-E241852- (5624 5927) ******************************************************************************** EST sequence 68 +strand 502 n (File: SGN-E313722+) 1 GTCTTCTTCG ACATCATCTG GACCAGAAAT CCCTTGGGTT GAGAAGTTTC GACCCACCAA 61 AGTATCCGAC ATCGTCGGCA ATGAAGATGC AGTTGCCAGG CTTCAAGTTA TTGCTCGTGA 121 TGGAAACATG CCCAATCTTA TTTTAGCCGG TCCTCCGGGT ACTGGCAAAA CCACTAGTAT 181 ATTGGCTCTT GCTCATGAGC TTTTGGGACC AAACTATAAG GAGGCTGTGT TGGAGCTAAA 241 TGCATCAGAT GATAGGGGCA TCGATGTTGT TAGAAACAAA ATCAAGATGT TTGCTCAGAA 301 GAAAGTTACT CTACCCCCTG GTCGGCACAA AATAATTATT TTGGACGAGG CTGACAGCAT 361 GACATCTGGA GCTCAGCAAG CACTGAGGAG GACAATGGAA ATATATTCGA ACTCCACTCG 421 CTTTGCTCTT GCCTGCAATA CTTCTTCGAA GATTATCGAG CCTATTCAAA GTAGATGTGC 481 CCTGGTTCGA TTCGCAAGAT TA Predicted gene structure (within gDNA segment 6220 to 10276): Exon 1 6820 6967 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 6968 8894 (1927 n); Pd: 0.996 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 2 8895 9001 ( 107 n); cDNA 149 255 ( 107 n); score: 1.000 Intron 2 9002 9100 ( 99 n); Pd: 0.943 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 9101 9202 ( 102 n); cDNA 256 357 ( 102 n); score: 1.000 Intron 3 9203 9431 ( 229 n); Pd: 0.963 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 9432 9576 ( 145 n); cDNA 358 502 ( 145 n); score: 0.993 MATCH C08HBa0197J17.1+ SGN-E313722+ 0.998 502 1.000 C PGS_C08HBa0197J17.1+_SGN-E313722+ (6820 6967,8895 9001,9101 9202,9432 9576) Alignment (genomic DNA sequence = upper lines): GTCTTCTTCG ACATCATCTG GACCAGAAAT CCCTTGGGTT GAGAAGTTTC GACCCACCAA 6879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTCTTCG ACATCATCTG GACCAGAAAT CCCTTGGGTT GAGAAGTTTC GACCCACCAA 60 AGTATCCGAC ATCGTCGGCA ATGAAGATGC AGTTGCCAGG CTTCAAGTTA TTGCTCGTGA 6939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATCCGAC ATCGTCGGCA ATGAAGATGC AGTTGCCAGG CTTCAAGTTA TTGCTCGTGA 120 TGGAAACATG CCCAATCTTA TTTTAGCCGT AAGAAATTTC CCCAATTTTG CTACTTTGTC 6999 |||||||||| |||||||||| |||||||| TGGAAACATG CCCAATCTTA TTTTAGCC.. .......... .......... .......... 148 ATTATTTGTT GCCCCATTTG TGAAAAAATA AGAAATTTTA GCTTATGGGG TTGAGGTATT 7059 .......... .......... .......... .......... .......... .......... 148 TGTCATATAT AGTATTTCTG TTACATAAAA AGACTTAACT TTTTGTGCAA TTTTGTGGAT 7119 .......... .......... .......... .......... .......... .......... 148 GATGGGGAAC TTTTATTTCT AGGTTTGAGG GTTAGTGTTG AGATTAGTAA ACACAGCTAC 7179 .......... .......... .......... .......... .......... .......... 148 TGTGAATTGT TAAGTATTTC TGTTACAAAA AGGACTGATT TTTTGTTCAA TGTATGAGTA 7239 .......... .......... .......... .......... .......... .......... 148 ATAAGAAGCT TTATTTTCTG GGTTTGAGGT TTAGTGTTGA GATTTGTTCA CCCAGCTTTC 7299 .......... .......... .......... .......... .......... .......... 148 CAAATTTTAA TTGTGCTTCT CAATTTGCTT CTGTTTCTCT TGTTTTGTTG CCCCATTTGT 7359 .......... .......... .......... .......... .......... .......... 148 GAAAAATAAG AAACTTTGAC TGTTGGGGTT GAAGTATTTT GCAGATAGAG CATTGTTGCT 7419 .......... .......... .......... .......... .......... .......... 148 TATTTCTGTG ACAAAAAAAG ACAACTTTTT GTGGATGAGG AGAAACTTTA TTTTCTGGGT 7479 .......... .......... .......... .......... .......... .......... 148 TTGATGTTTA GTATTGAGAT AGACCCAGCT TGTATTGTTT ATTGATTTCA CCGGATATAG 7539 .......... .......... .......... .......... .......... .......... 148 AAAAGAAAAT GAAAAAAGTG TTAAGAACTT TCATGTGGTG ATCCTAACAA GCTTGAACTA 7599 .......... .......... .......... .......... .......... .......... 148 TGTTAGATGC TATTACTATA TGTGATTTAT GCCAAGTGTA GGAAAAAAGA ACTAACTTTT 7659 .......... .......... .......... .......... .......... .......... 148 TGTTCCATGT ATGGTTAATG AATAAACTAT TGCGAGGTTT GTGGTTTACT GCAGAGAGTA 7719 .......... .......... .......... .......... .......... .......... 148 GTAGAGGGAC AGACCTCTTC TATAATGGGT TCTATATTTG GGTTGTCAAA AAGTAAAAGA 7779 .......... .......... .......... .......... .......... .......... 148 GAAACATGTT GTTTATAATT GCTTGCGGGG TTATTCACAA GCTTGAAATA TGTCATAAGC 7839 .......... .......... .......... .......... .......... .......... 148 TATTAAATAT ATCAAGATTA TGTAAAATGA AGAGAAGTTC TATTTTTTGC TTCATTGGAT 7899 .......... .......... .......... .......... .......... .......... 148 GTTATAAAAC TTTATTTTAT GGGTTTAAGG GTAATAATTT TTATTTTTTA AAAAAAATAT 7959 .......... .......... .......... .......... .......... .......... 148 TTAAATATGA GCTCCATAGT GAAAGTCTAA TCATGAAATG GTTATGAAGA TAATCAATCT 8019 .......... .......... .......... .......... .......... .......... 148 GAGAGGGAGG AGTATATTTT CTTGGGGGCC TAGTGGGAAA TGATTTTTTT TCGGCAAGTC 8079 .......... .......... .......... .......... .......... .......... 148 ATGCTATGAA AAATTGTTTG AGAAAGTTGA GTGCTTCAGA AGTGGCCATG GAAGCTTATC 8139 .......... .......... .......... .......... .......... .......... 148 AGGGATCAAA AGCTCCATAC AATGTTCTTA CTTTTGTTAG ATTGTAGATT TACTACTATA 8199 .......... .......... .......... .......... .......... .......... 148 ATATCAGTTT TATTCCCTTG CGGTCAATAA GTCCTGAATA TGAACCCTTT TTTATTCCTT 8259 .......... .......... .......... .......... .......... .......... 148 TTGTCATGAA AATCTTAATA GTCCTTGCTT AGTAACCAGA CTTCTACAGT TGCATGTATA 8319 .......... .......... .......... .......... .......... .......... 148 TATATCTGCA AAAGTATGCA CTCGTGTGAG GTGAGCTTAT GCCAGATGTT GGATGCGGAT 8379 .......... .......... .......... .......... .......... .......... 148 TCTATTTCCT CTTGTTCATT CTCTATTTTG TGGGAGAATA GACTTCCAGT TTCAAATACA 8439 .......... .......... .......... .......... .......... .......... 148 ATCTTGTTAT TGATAAATCT TGAATTGGAT CCTTGAGTAA TATTGATTGG TTACTTTCAG 8499 .......... .......... .......... .......... .......... .......... 148 TGTGTTAATT GATGAGAATG TGTAAAAACA AAGTAGTTAT TGCTAGTTTT CCTGGAAGTT 8559 .......... .......... .......... .......... .......... .......... 148 GATCATTTTT ACTCCAATGC ACATCTAATT TAGGACTTTC CTCCACCAAA ATGTTTGTCC 8619 .......... .......... .......... .......... .......... .......... 148 ATTTGTGGTT ACATTAACTT GGCAAAAGCA GTTTGCTCAT AGCAGCAGTG GAGCTCAATT 8679 .......... .......... .......... .......... .......... .......... 148 AAAAACTTAG TTCGAGTAAG TATATTAGGA AGGTGGACAA GACTTTACAG GATGTCGTTC 8739 .......... .......... .......... .......... .......... .......... 148 ACTGGAAAGT TATTGAAAAA TCATGTCAAA CAAATATTAC TTTTCACATG TTTATCCAGT 8799 .......... .......... .......... .......... .......... .......... 148 CCAATCCATG AAAGAGAAGA AAAGATACAT CTCTAAAAGA TTTTGCGCAT GGTTTCTTCA 8859 .......... .......... .......... .......... .......... .......... 148 TGCTGGATAT TCAATTCTAT TTAAAACTCC TACAGGGTCC TCCGGGTACT GGCAAAACCA 8919 ||||| |||||||||| |||||||||| .......... .......... .......... .....GGTCC TCCGGGTACT GGCAAAACCA 173 CTAGTATATT GGCTCTTGCT CATGAGCTTT TGGGACCAAA CTATAAGGAG GCTGTGTTGG 8979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTATATT GGCTCTTGCT CATGAGCTTT TGGGACCAAA CTATAAGGAG GCTGTGTTGG 233 AGCTAAATGC ATCAGATGAT AGGTATATTG AGTGCTTGAT TAGATATAAA AAACTCTTTG 9039 |||||||||| |||||||||| || AGCTAAATGC ATCAGATGAT AG........ .......... .......... .......... 255 TTTCACATGG TTAGTTCTTG CTTCTGTAAA ATGCTTAGAA GCTTTAATGT TTCTTGTGCA 9099 .......... .......... .......... .......... .......... .......... 255 GGGGCATCGA TGTTGTTAGA AACAAAATCA AGATGTTTGC TCAGAAGAAA GTTACTCTAC 9159 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GGGCATCGA TGTTGTTAGA AACAAAATCA AGATGTTTGC TCAGAAGAAA GTTACTCTAC 314 CCCCTGGTCG GCACAAAATA ATTATTTTGG ACGAGGCTGA CAGGTTCGAA ATGTTCTCCT 9219 |||||||||| |||||||||| |||||||||| |||||||||| ||| CCCCTGGTCG GCACAAAATA ATTATTTTGG ACGAGGCTGA CAG....... .......... 357 GTAAATTTGG AAATCATTTG TTTGCCGAGA GGTTGAAGTC ATGGAAAAAA AACTGTTCAT 9279 .......... .......... .......... .......... .......... .......... 357 ATTTCTATCT CTTCCACACT ATTGCTATCA GTTTGATTGA TTCTCAGGAT TAGTAAACTA 9339 .......... .......... .......... .......... .......... .......... 357 TCTATTGACC TGCATTTTCT GCAGTAGCTC AATCATTTTA GTTTTCACTG TTGGGTGTGG 9399 .......... .......... .......... .......... .......... .......... 357 GAATTTTATT GCCATGTTTC TTTAATTTTT AGCATGACAT CTGGAGCTCA GCAAGCACTG 9459 |||||||| |||||||||| |||||||||| .......... .......... .......... ..CATGACAT CTGGAGCTCA GCAAGCACTG 385 AGGAGGACAA TGGAAATATA TTCGAACTCC ACTCGCTTTG CTCTTGCCTG CAATACTTCT 9519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGACAA TGGAAATATA TTCGAACTCC ACTCGCTTTG CTCTTGCCTG CAATACTTCT 445 TCGAAGATTA TCGAGCCTAT TCAAAGTAGA TGTGCCCTGG TTCGATTTGC AAGATTA 9576 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||||| TCGAAGATTA TCGAGCCTAT TCAAAGTAGA TGTGCCCTGG TTCGATTCGC AAGATTA 502 hqPGS_C08HBa0197J17.1+_SGN-E313722+ (6820 6967,8895 9001,9101 9202,9432 9576) ******************************************************************************** EST sequence 18 +strand 844 n (File: SGN-E552597+) 1 GAAGCATCTT GGCCCACATG ATGACTGAAC ATTATTTGTT GGGCGCGTTC CATCTCTCCC 61 TCGCGTGAGA CAGAGAGAGA CAGCATGATG TATAGAAGGA ACTCGAGTCG AAATGTGGTC 121 CAGCTTGTGT ACATTTTAAA CTTGTATTCA ACTACGGCTA CCCTGGCTGT GCAATCTTCT 181 AACTTATTGT ACTCTTGGAG TCTCACTATG TTTTTCCTGA GTCAGAAGAA CTGGGGGTTC 241 TCTATCAGTT GAGATCCATT AGTCCGGAAC GAGCTTACAA CCCTGATCAA AATGTTTGCT 301 CAAAAAAAAG TTACTCTGGG GGGGGGGCGG GACACATAAT TCTCTTGGAC GAGGCTGACA 361 GCATGACATC TGGAGCTCAT TAAGCAATGA GGAGGACAAT GGAAATATAT TCGAACTCCA 421 CTCGCTTTGC TCTTGCCTGC AATACTTCTT CGAAGATTAT CGAGCCTATT CAAAGTAGAT 481 GTGCCCTGGT TCGATTTGCA AGATTATCTG ACCAAGAGAT CCTTGGACGC CTTATGGCTG 541 TAGTTGCAGC AGAAAAGGTT GCTTATGTAC CTGAAGGCCT TGAAGCTATT ATATTTACTG 601 CTGATGGAGA CATGAGACAG GGCTTAAATA ACTTACAAGC AACACATAGT GGATTTGGTT 661 TTGTCAACCA AGAGAATGTT TTCAAGGTTT GTGACCAACC TCATCCATTG CATGTGAAGA 721 ATATGGTGCG GAATGTCCTC GAAGGAAAAT TTGATGATGC ATGTGCTGGT CTAAAGGCCC 781 TGTATGACCT GGGATATTCC CCCACTGACA TCATTCACAA CCCTCTTCCG AATTTTAAAG 841 AACT Predicted gene structure (within gDNA segment 5240 to 11158): Exon 1 9115 9202 ( 88 n); cDNA 275 361 ( 87 n); score: 0.761 Intron 1 9203 9431 ( 229 n); Pd: 0.963 (s: 0.74), Pa: 0.995 (s: 0.94) Exon 2 9432 9627 ( 196 n); cDNA 362 557 ( 196 n); score: 0.985 Intron 2 9628 10081 ( 454 n); Pd: 0.997 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 10082 10210 ( 129 n); cDNA 558 686 ( 129 n); score: 1.000 Intron 3 10211 10301 ( 91 n); Pd: 0.960 (s: 1.00), Pa: 0.949 (s: 1.00) Exon 4 10302 10458 ( 157 n); cDNA 687 844 ( 158 n); score: 0.971 MATCH C08HBa0197J17.1+ SGN-E552597+ 0.950 570 0.675 C PGS_C08HBa0197J17.1+_SGN-E552597+ (9115 9202,9432 9627,10082 10210,10302 10458) Alignment (genomic DNA sequence = upper lines): TTAGAAACAA AATCAAGATG TTTGCTCAGA AGAAAGTTAC TCTACCCCCT GGTCGGCACA 9174 ||| || | ||||| ||| |||||||| | | |||||||| ||| || ||| || TTACAACCCT GATCAAAATG TTTGCTCAAA AAAAAGTTAC TCTGGGGGGG GGGCGGGAC- 333 AAATAATTAT TTTGGACGAG GCTGACAGGT TCGAAATGTT CTCCTGTAAA TTTGGAAATC 9234 | |||||| | ||||||||| |||||||| ACATAATTCT CTTGGACGAG GCTGACAG.. .......... .......... .......... 361 ATTTGTTTGC CGAGAGGTTG AAGTCATGGA AAAAAAACTG TTCATATTTC TATCTCTTCC 9294 .......... .......... .......... .......... .......... .......... 361 ACACTATTGC TATCAGTTTG ATTGATTCTC AGGATTAGTA AACTATCTAT TGACCTGCAT 9354 .......... .......... .......... .......... .......... .......... 361 TTTCTGCAGT AGCTCAATCA TTTTAGTTTT CACTGTTGGG TGTGGGAATT TTATTGCCAT 9414 .......... .......... .......... .......... .......... .......... 361 GTTTCTTTAA TTTTTAGCAT GACATCTGGA GCTCAGCAAG CACTGAGGAG GACAATGGAA 9474 ||| |||||||||| ||||| ||| || ||||||| |||||||||| .......... .......CAT GACATCTGGA GCTCATTAAG CAATGAGGAG GACAATGGAA 404 ATATATTCGA ACTCCACTCG CTTTGCTCTT GCCTGCAATA CTTCTTCGAA GATTATCGAG 9534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATATTCGA ACTCCACTCG CTTTGCTCTT GCCTGCAATA CTTCTTCGAA GATTATCGAG 464 CCTATTCAAA GTAGATGTGC CCTGGTTCGA TTTGCAAGAT TATCTGACCA AGAGATCCTT 9594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTCAAA GTAGATGTGC CCTGGTTCGA TTTGCAAGAT TATCTGACCA AGAGATCCTT 524 GGACGCCTTA TGGCTGTAGT TGCAGCAGAA AAGGTACTAG CAATCTTAAT CCTCGACATA 9654 |||||||||| |||||||||| |||||||||| ||| GGACGCCTTA TGGCTGTAGT TGCAGCAGAA AAG....... .......... .......... 557 CATGCTATTC TTTTGGTGTT CTTCTTGCTG CTTCTTAGTG GTTTCTTTTG ATCCTTGTGT 9714 .......... .......... .......... .......... .......... .......... 557 TTAATCAACA ATTTTTGTAT GCATAATGAG GCAGGTACCA TGTTATTAAA CCTTAATCTG 9774 .......... .......... .......... .......... .......... .......... 557 TTGCAGCACA TTGAACCTCC AGCTGTTCTG CAAAATTTCA TGCCTTTGTT TGCTAATTAG 9834 .......... .......... .......... .......... .......... .......... 557 TTTGGTTAAG GAGTATCCTG GTAATTGGTA TTTATGTTCT GTCTTTAAAA AATGTCTAAC 9894 .......... .......... .......... .......... .......... .......... 557 CAAAATTATG AGCTCAAGGG TAGGAACTTT TCTATACCCC TTCAGCCTCA CCAGCATTGG 9954 .......... .......... .......... .......... .......... .......... 557 GGAAGTTTCA TCACTTACTC GAATCACTTC AATATGCGAT CATCTGTGTT TTTACCAAAG 10014 .......... .......... .......... .......... .......... .......... 557 TCTTTGCGGA AACATATTGG TGGAAGGGAG GGAAGAGATT CATGCTACAG AGATTTACCT 10074 .......... .......... .......... .......... .......... .......... 557 CTTGCAGGTT GCTTATGTAC CTGAAGGCCT TGAAGCTATT ATATTTACTG CTGATGGAGA 10134 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTT GCTTATGTAC CTGAAGGCCT TGAAGCTATT ATATTTACTG CTGATGGAGA 610 CATGAGACAG GGCTTAAATA ACTTACAAGC AACACATAGT GGATTTGGTT TTGTCAACCA 10194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAGACAG GGCTTAAATA ACTTACAAGC AACACATAGT GGATTTGGTT TTGTCAACCA 670 AGAGAATGTT TTCAAGGTTA CAAGGCTCAC ATATCTCTTT GATATAGTAA TTCATCGTTT 10254 |||||||||| |||||| AGAGAATGTT TTCAAG.... .......... .......... .......... .......... 686 GACAGAGTCC CCCCTTGATG ATTCCATTCT CTCTTGTTGA ATGCTAGGTT TGTGACCAAC 10314 ||| |||||||||| .......... .......... .......... .......... .......GTT TGTGACCAAC 699 CTCATCCATT GCATGTGAAG AATATGGTGC GGAATGTCCT CGAAGGAAAA TTTGATGATG 10374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCCATT GCATGTGAAG AATATGGTGC GGAATGTCCT CGAAGGAAAA TTTGATGATG 759 CATGTGCTGG TCTAAAGGCA CTGTATGACC TGGGATATTC CCCCACTGAC ATCA-TCACA 10433 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CATGTGCTGG TCTAAAGGCC CTGTATGACC TGGGATATTC CCCCACTGAC ATCATTCACA 819 ACCCTCTTCC GAATTATAAA GAACT 10458 |||||||||| ||||| |||| ||||| ACCCTCTTCC GAATTTTAAA GAACT 844 hqPGS_C08HBa0197J17.1+_SGN-E552597+ (9115 9202,9432 9627,10082 10210,10302 10458) ******************************************************************************** EST sequence 30 +strand 814 n (File: SGN-E555164+) 1 ACTTTACACA GAGAAAAAGC AAACAAATCC TTCAACAACA AAAGAAAATG TGCTCACCGC 61 GTTTTTCCTA TCTGAGAGAT ACTTCCTTAG CTGTTAAAAA AACTCCTCAC AACCCCTAAA 121 AATCCTCTCT TTTTTCAGTT TTAATTCTTC CCCAATTCTT GAAAATTCAT TTCTAAAGCT 181 TTCTTCATCT CTGCTTCAAA GCTACTTCAC CCCACCCACC CCCACAATAT AAATAAACTT 241 TGAAGAAATT GCTGAGTTTG TTCAGTTTTT CTGAAATCAA GAATGATGGG TAATAGAGAT 301 CTGGAGAGGG GAGGTGGAAC AAAGCCAAGA AATGGGAGTT ACCAACCACC CCCAACAACA 361 GCAGCACCTT ACTATATGGA AACTTCTGAA TCACAGTGGA CTTCTTGGCT AGTCCCTATG 421 ATTGTTGTAG CCAATGTAGC TATGTTTATT GTCATCATGT TTGTTAACAA TTGCCCAAGT 481 AATATCAATA ATTTTGGCAG AGGTGGAGGA CGCCGCCAGT GTGTTGCCAG GTTTCTTGGG 541 AGGCTTTCTT TTCAACCTCT TCAAGATAAT CCACTTTTTG GACCCTCTTC ATCCACACTA 601 CAAAATTTGG GAGCTCTAGA ATGGGATAAA GTAGTGCACG GACATCAGGG CTGGAGGCTT 661 TTCACTTGTA TCTGGTTACA TGCTGGTGTT GTTCATCTGC TTGCAAACAT GTTGAGTTTG 721 GTATTCATTG GTATTCGCCT CGAGCAGCAG TTTGGATTTG TCCGGGTGGG GGGATTATCT 781 ACGTTTTGTC AGGAATTGGT GGGCAGTGTT CTTT Predicted gene structure (within gDNA segment 13931 to 18493): Exon 1 14531 15126 ( 596 n); cDNA 1 596 ( 596 n); score: 1.000 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17397 ( 164 n); cDNA 597 760 ( 164 n); score: 1.000 Intron 2 17398 17723 ( 326 n); Pd: 0.964 (s: 1.00), Pa: 0.997 (s: 0.84) Exon 3 17724 17774 ( 51 n); cDNA 761 814 ( 54 n); score: 0.853 MATCH C08HBa0197J17.1+ SGN-E555164+ 0.991 811 0.996 C PGS_C08HBa0197J17.1+_SGN-E555164+ (14531 15126,17234 17397,17724 17774) Alignment (genomic DNA sequence = upper lines): ACTTTACACA GAGAAAAAGC AAACAAATCC TTCAACAACA AAAGAAAATG TGCTCACCGC 14590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTACACA GAGAAAAAGC AAACAAATCC TTCAACAACA AAAGAAAATG TGCTCACCGC 60 GTTTTTCCTA TCTGAGAGAT ACTTCCTTAG CTGTTAAAAA AACTCCTCAC AACCCCTAAA 14650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTCCTA TCTGAGAGAT ACTTCCTTAG CTGTTAAAAA AACTCCTCAC AACCCCTAAA 120 AATCCTCTCT TTTTTCAGTT TTAATTCTTC CCCAATTCTT GAAAATTCAT TTCTAAAGCT 14710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTCTCT TTTTTCAGTT TTAATTCTTC CCCAATTCTT GAAAATTCAT TTCTAAAGCT 180 TTCTTCATCT CTGCTTCAAA GCTACTTCAC CCCACCCACC CCCACAATAT AAATAAACTT 14770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCATCT CTGCTTCAAA GCTACTTCAC CCCACCCACC CCCACAATAT AAATAAACTT 240 TGAAGAAATT GCTGAGTTTG TTCAGTTTTT CTGAAATCAA GAATGATGGG TAATAGAGAT 14830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAATT GCTGAGTTTG TTCAGTTTTT CTGAAATCAA GAATGATGGG TAATAGAGAT 300 CTGGAGAGGG GAGGTGGAAC AAAGCCAAGA AATGGGAGTT ACCAACCACC CCCAACAACA 14890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAGAGGG GAGGTGGAAC AAAGCCAAGA AATGGGAGTT ACCAACCACC CCCAACAACA 360 GCAGCACCTT ACTATATGGA AACTTCTGAA TCACAGTGGA CTTCTTGGCT AGTCCCTATG 14950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCACCTT ACTATATGGA AACTTCTGAA TCACAGTGGA CTTCTTGGCT AGTCCCTATG 420 ATTGTTGTAG CCAATGTAGC TATGTTTATT GTCATCATGT TTGTTAACAA TTGCCCAAGT 15010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTTGTAG CCAATGTAGC TATGTTTATT GTCATCATGT TTGTTAACAA TTGCCCAAGT 480 AATATCAATA ATTTTGGCAG AGGTGGAGGA CGCCGCCAGT GTGTTGCCAG GTTTCTTGGG 15070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATCAATA ATTTTGGCAG AGGTGGAGGA CGCCGCCAGT GTGTTGCCAG GTTTCTTGGG 540 AGGCTTTCTT TTCAACCTCT TCAAGATAAT CCACTTTTTG GACCCTCTTC ATCCACGTAA 15130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGGCTTTCTT TTCAACCTCT TCAAGATAAT CCACTTTTTG GACCCTCTTC ATCCAC.... 596 AGTTTAAAAC TTTTTGATCT AGTTTTTGTA ATGATTGTTC TTTGTTTATG ATTTTTCATG 15190 .......... .......... .......... .......... .......... .......... 596 TTTATTAGCC TGTTTGATTT GATTGTGTTA ATTGTTGCGT TGTATAGCTT ATGGAGGATG 15250 .......... .......... .......... .......... .......... .......... 596 AAGGTTCTTG TTTATTTGAT GCAGATTTAG TGTGGTCATA TGGATTCTTG ATTTCTATGG 15310 .......... .......... .......... .......... .......... .......... 596 TTTTGTAAAT CAAGAAAAGG AAAAAGATTG AATTTTTAAC ATAGTGTAAT TTCACAAGTG 15370 .......... .......... .......... .......... .......... .......... 596 GGGTGTGGGA TGGTTAGATC ATAGGTGTAT GTAGACCTTA TCACTACCTT TGTGGGATAG 15430 .......... .......... .......... .......... .......... .......... 596 AGAGGTTGTT TATGACAAAA AGGGAATTCC TTCGTGGGGG TAGAGAGGTT ATATCCGATA 15490 .......... .......... .......... .......... .......... .......... 596 AAAGAAAATA CCTTTGCAGG GTGGAGAGGT TGTTTCCGAT AAATGGAAAT ACCTTTGTTG 15550 .......... .......... .......... .......... .......... .......... 596 GATAGAGAGG CTGTTTTCGA TGAAAGGAAA TACATTTGTG GGATAGAGAG GTTGTTTCTG 15610 .......... .......... .......... .......... .......... .......... 596 CTAAAAGGAA ATACCTTTGT GGGGGTAGAG AGGCTGTTTC CGATGAAAGG AAACACCTTT 15670 .......... .......... .......... .......... .......... .......... 596 ATGGTGTAGA GATGCTTTTA AGATGATTAC ATTAATTCAT AGAAGGAAAT ATTGTTTGTT 15730 .......... .......... .......... .......... .......... .......... 596 TTTAGTAAAA CACTAACTAT CTTGGATTTG TTTGTAGCTA ATTCGTGATT TCAGTTACTT 15790 .......... .......... .......... .......... .......... .......... 596 GTTGTGTTTC TTGTCTTGTT TAAACAAAGA CATTTCAGCT GGCAGAAGTG GATTTAGGAT 15850 .......... .......... .......... .......... .......... .......... 596 GTGAATTTTA TGGCTAGAGT ATGAAAGTAC ATCACAACCC ATTATAGGGT ATGAAATCTA 15910 .......... .......... .......... .......... .......... .......... 596 TTACACGAAC TTATTTGGTG GCTTTTTAAA ACACGTATGC GGTCTGAGCT AAACTTGCTG 15970 .......... .......... .......... .......... .......... .......... 596 GATTCGGACA AACCATAACT CCTATGATAC ATTCGCTTGC CTGATGAGAG TTTCTAATAT 16030 .......... .......... .......... .......... .......... .......... 596 TTCTCTTCGC CCCTTCATTC ATCTGATATT GTTATATAAG GTTTTAAATT GGGACGCTTA 16090 .......... .......... .......... .......... .......... .......... 596 GGAGGCCAAG CATAGTTTGA GAGTGCTGTA TTGCCTGCTT TAATTGCTAA TCAATTCTGC 16150 .......... .......... .......... .......... .......... .......... 596 TAATGTTTAG AACTCTTGCC TCAAGCATGC TTTTTGACAT CTAAAATTTG CTTTCTAACT 16210 .......... .......... .......... .......... .......... .......... 596 CCTAATTGAG CTTATTTGGA TCCTTTTAGT ATTAATTCTA GAATCGTTTC CTTTGTAATG 16270 .......... .......... .......... .......... .......... .......... 596 TTGCAATGAT GCTGTTGCTA GATCAGTAAT ATTTCTTTTA ACCTCTTAAT GCTAATAATG 16330 .......... .......... .......... .......... .......... .......... 596 CTTGTTCGAT CATGTCAAGT TGCATATACT GGCTGTAACG TCTTGGAAAT TTTCTTCGAT 16390 .......... .......... .......... .......... .......... .......... 596 TAATGAATCC TCATTATTGT TATGCTGTTT GGACTTCTGC TGATATAATG AACCCACACT 16450 .......... .......... .......... .......... .......... .......... 596 TGCATGGGGG TCCAGGCAAG ATATGCCAGA GGTATTAGGT AATAGATGTA GTCAAAAGCT 16510 .......... .......... .......... .......... .......... .......... 596 TATGGCAATA AACATGATAT TATCACAAGA ATGGGCTGTA AGCTGTAGAT TGCTGTAAGT 16570 .......... .......... .......... .......... .......... .......... 596 TCTTCAATGA AAGTGAGGCA TCAATATATA CATAAAAAAA GAACTATTTG AATAATACAT 16630 .......... .......... .......... .......... .......... .......... 596 TCAAATGGGA TTTGCATTTG GGCAATGACT AGTTCTTCCA AACATCAGAC AAACGAAATA 16690 .......... .......... .......... .......... .......... .......... 596 GTTGAGAATT TACTTGTTTG CTACTAAATT ATGAAACACT TCCTCTCTTT CCCTGCACCT 16750 .......... .......... .......... .......... .......... .......... 596 GCAAATCAAA CCTTCTTCCA TTTTTAGAGA TGTGAACGAG TTTACAGTTG GATGGAACGA 16810 .......... .......... .......... .......... .......... .......... 596 ACATTTATTA ACCCCTTGGT AAAATTTTAC AAAATTAAGC ACAAATAGGA GAGTGCTTTT 16870 .......... .......... .......... .......... .......... .......... 596 GTCGGAAACT TTACAGCAAT ATCTAAGGGA GAATTCCCTT CCGCCATCTT AAGAGTGTTT 16930 .......... .......... .......... .......... .......... .......... 596 GTGTACATGG AGGGAATTGA ATAGCCTTTC TTTTTCTGGC ATTTTGGAGA TAAGTAGATC 16990 .......... .......... .......... .......... .......... .......... 596 CGTTGGGATA GCGGTTGTGA TGCAATAGTT GTTGCTATAT TGGTTCCATT GAGTATCAAG 17050 .......... .......... .......... .......... .......... .......... 596 TCTTCTGGAG TTAAATGGGT GAATGTGCTA TTGCTGACGT CCTACTTGCT GCTATGCCAC 17110 .......... .......... .......... .......... .......... .......... 596 GCACCGATAT CACTCATACT GGAAAGATAA AATAAAATGA AATAGAAACC AAAAGGCAAA 17170 .......... .......... .......... .......... .......... .......... 596 AAATGGAAGA CAGATTGATA TATATGAACT GCTATATATT CATTCTTTCT TGTTCTTGTG 17230 .......... .......... .......... .......... .......... .......... 596 CAGACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA GTGCACGGAC ATCAGGGCTG 17290 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA GTGCACGGAC ATCAGGGCTG 653 GAGGCTTTTC ACTTGTATCT GGTTACATGC TGGTGTTGTT CATCTGCTTG CAAACATGTT 17350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCTTTTC ACTTGTATCT GGTTACATGC TGGTGTTGTT CATCTGCTTG CAAACATGTT 713 GAGTTTGGTA TTCATTGGTA TTCGCCTCGA GCAGCAGTTT GGATTTGGTA CAATTCTCCT 17410 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAGTTTGGTA TTCATTGGTA TTCGCCTCGA GCAGCAGTTT GGATTTG... .......... 760 CCCTGTGCCC TCAAATATTT CTTCATGTTC TTTTGGATAA CACTAGTACA CAACAAATGT 17470 .......... .......... .......... .......... .......... .......... 760 CTTTTTATGC ATAAGCAATT CATTCTACTT TCCTCTAAAT TGTGCCCGTG TCTAGCTTCC 17530 .......... .......... .......... .......... .......... .......... 760 TCGGCTCCGT TTGTCATTAC AGTTCATCTG CTGAAATAGA AGTACTGTTT TTACTTGCAA 17590 .......... .......... .......... .......... .......... .......... 760 TCTCTTTAAC ATCAACAATT TCAGTCACTT CTTTCTGAAA TATAACCCCA CCTTCAATTT 17650 .......... .......... .......... .......... .......... .......... 760 TCTTAACCTT GAGCTGACTA GTGTCTTAAT TCACTTTTTG TTCTTATATT TATATCTCTA 17710 .......... .......... .......... .......... .......... .......... 760 ATGTTATGTG CAGTCCGGGT --GGGGATTA TCTACGTTTT GTCAGGAATT GGT-GGCAGT 17767 ||||||| |||||||| |||||||||| |||||||||| ||| |||||| .......... ...TCCGGGT GGGGGGATTA TCTACGTTTT GTCAGGAATT GGTGGGCAGT 807 GTTCTTT 17774 ||||||| GTTCTTT 814 hqPGS_C08HBa0197J17.1+_SGN-E555164+ (14531 15126,17234 17397,17724 17774) ******************************************************************************** EST sequence 65 +strand 641 n (File: SGN-E301818+) 1 GAAAATGTGC TCACCGCGTT TTTCCTATCT GAGAGATACT TCCTTAGCTG TGAAAAAAAC 61 TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 121 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 181 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 241 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 301 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 361 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 421 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 481 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 541 CCTCTTCATC CACACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA GTGCACGGAC 601 ATCAGGGCTG GAGGCTTTTC ACTTGTATCT GGTTACATGC T Predicted gene structure (within gDNA segment 13974 to 17931): Exon 1 14574 15126 ( 553 n); cDNA 1 553 ( 553 n); score: 0.998 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17321 ( 88 n); cDNA 554 641 ( 88 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E301818+ 0.998 641 1.000 C PGS_C08HBa0197J17.1+_SGN-E301818+ (14574 15126,17234 17321) Alignment (genomic DNA sequence = upper lines): GAAAATGTGC TCACCGCGTT TTTCCTATCT GAGAGATACT TCCTTAGCTG TTAAAAAAAC 14633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GAAAATGTGC TCACCGCGTT TTTCCTATCT GAGAGATACT TCCTTAGCTG TGAAAAAAAC 60 TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 14693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 120 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 14753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 180 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 14813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 240 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 14873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 300 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 14933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 360 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 14993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 420 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 15053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 480 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 15113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 540 CCTCTTCATC CACGTAAAGT TTAAAACTTT TTGATCTAGT TTTTGTAATG ATTGTTCTTT 15173 |||||||||| ||| CCTCTTCATC CAC....... .......... .......... .......... .......... 553 GTTTATGATT TTTCATGTTT ATTAGCCTGT TTGATTTGAT TGTGTTAATT GTTGCGTTGT 15233 .......... .......... .......... .......... .......... .......... 553 ATAGCTTATG GAGGATGAAG GTTCTTGTTT ATTTGATGCA GATTTAGTGT GGTCATATGG 15293 .......... .......... .......... .......... .......... .......... 553 ATTCTTGATT TCTATGGTTT TGTAAATCAA GAAAAGGAAA AAGATTGAAT TTTTAACATA 15353 .......... .......... .......... .......... .......... .......... 553 GTGTAATTTC ACAAGTGGGG TGTGGGATGG TTAGATCATA GGTGTATGTA GACCTTATCA 15413 .......... .......... .......... .......... .......... .......... 553 CTACCTTTGT GGGATAGAGA GGTTGTTTAT GACAAAAAGG GAATTCCTTC GTGGGGGTAG 15473 .......... .......... .......... .......... .......... .......... 553 AGAGGTTATA TCCGATAAAA GAAAATACCT TTGCAGGGTG GAGAGGTTGT TTCCGATAAA 15533 .......... .......... .......... .......... .......... .......... 553 TGGAAATACC TTTGTTGGAT AGAGAGGCTG TTTTCGATGA AAGGAAATAC ATTTGTGGGA 15593 .......... .......... .......... .......... .......... .......... 553 TAGAGAGGTT GTTTCTGCTA AAAGGAAATA CCTTTGTGGG GGTAGAGAGG CTGTTTCCGA 15653 .......... .......... .......... .......... .......... .......... 553 TGAAAGGAAA CACCTTTATG GTGTAGAGAT GCTTTTAAGA TGATTACATT AATTCATAGA 15713 .......... .......... .......... .......... .......... .......... 553 AGGAAATATT GTTTGTTTTT AGTAAAACAC TAACTATCTT GGATTTGTTT GTAGCTAATT 15773 .......... .......... .......... .......... .......... .......... 553 CGTGATTTCA GTTACTTGTT GTGTTTCTTG TCTTGTTTAA ACAAAGACAT TTCAGCTGGC 15833 .......... .......... .......... .......... .......... .......... 553 AGAAGTGGAT TTAGGATGTG AATTTTATGG CTAGAGTATG AAAGTACATC ACAACCCATT 15893 .......... .......... .......... .......... .......... .......... 553 ATAGGGTATG AAATCTATTA CACGAACTTA TTTGGTGGCT TTTTAAAACA CGTATGCGGT 15953 .......... .......... .......... .......... .......... .......... 553 CTGAGCTAAA CTTGCTGGAT TCGGACAAAC CATAACTCCT ATGATACATT CGCTTGCCTG 16013 .......... .......... .......... .......... .......... .......... 553 ATGAGAGTTT CTAATATTTC TCTTCGCCCC TTCATTCATC TGATATTGTT ATATAAGGTT 16073 .......... .......... .......... .......... .......... .......... 553 TTAAATTGGG ACGCTTAGGA GGCCAAGCAT AGTTTGAGAG TGCTGTATTG CCTGCTTTAA 16133 .......... .......... .......... .......... .......... .......... 553 TTGCTAATCA ATTCTGCTAA TGTTTAGAAC TCTTGCCTCA AGCATGCTTT TTGACATCTA 16193 .......... .......... .......... .......... .......... .......... 553 AAATTTGCTT TCTAACTCCT AATTGAGCTT ATTTGGATCC TTTTAGTATT AATTCTAGAA 16253 .......... .......... .......... .......... .......... .......... 553 TCGTTTCCTT TGTAATGTTG CAATGATGCT GTTGCTAGAT CAGTAATATT TCTTTTAACC 16313 .......... .......... .......... .......... .......... .......... 553 TCTTAATGCT AATAATGCTT GTTCGATCAT GTCAAGTTGC ATATACTGGC TGTAACGTCT 16373 .......... .......... .......... .......... .......... .......... 553 TGGAAATTTT CTTCGATTAA TGAATCCTCA TTATTGTTAT GCTGTTTGGA CTTCTGCTGA 16433 .......... .......... .......... .......... .......... .......... 553 TATAATGAAC CCACACTTGC ATGGGGGTCC AGGCAAGATA TGCCAGAGGT ATTAGGTAAT 16493 .......... .......... .......... .......... .......... .......... 553 AGATGTAGTC AAAAGCTTAT GGCAATAAAC ATGATATTAT CACAAGAATG GGCTGTAAGC 16553 .......... .......... .......... .......... .......... .......... 553 TGTAGATTGC TGTAAGTTCT TCAATGAAAG TGAGGCATCA ATATATACAT AAAAAAAGAA 16613 .......... .......... .......... .......... .......... .......... 553 CTATTTGAAT AATACATTCA AATGGGATTT GCATTTGGGC AATGACTAGT TCTTCCAAAC 16673 .......... .......... .......... .......... .......... .......... 553 ATCAGACAAA CGAAATAGTT GAGAATTTAC TTGTTTGCTA CTAAATTATG AAACACTTCC 16733 .......... .......... .......... .......... .......... .......... 553 TCTCTTTCCC TGCACCTGCA AATCAAACCT TCTTCCATTT TTAGAGATGT GAACGAGTTT 16793 .......... .......... .......... .......... .......... .......... 553 ACAGTTGGAT GGAACGAACA TTTATTAACC CCTTGGTAAA ATTTTACAAA ATTAAGCACA 16853 .......... .......... .......... .......... .......... .......... 553 AATAGGAGAG TGCTTTTGTC GGAAACTTTA CAGCAATATC TAAGGGAGAA TTCCCTTCCG 16913 .......... .......... .......... .......... .......... .......... 553 CCATCTTAAG AGTGTTTGTG TACATGGAGG GAATTGAATA GCCTTTCTTT TTCTGGCATT 16973 .......... .......... .......... .......... .......... .......... 553 TTGGAGATAA GTAGATCCGT TGGGATAGCG GTTGTGATGC AATAGTTGTT GCTATATTGG 17033 .......... .......... .......... .......... .......... .......... 553 TTCCATTGAG TATCAAGTCT TCTGGAGTTA AATGGGTGAA TGTGCTATTG CTGACGTCCT 17093 .......... .......... .......... .......... .......... .......... 553 ACTTGCTGCT ATGCCACGCA CCGATATCAC TCATACTGGA AAGATAAAAT AAAATGAAAT 17153 .......... .......... .......... .......... .......... .......... 553 AGAAACCAAA AGGCAAAAAA TGGAAGACAG ATTGATATAT ATGAACTGCT ATATATTCAT 17213 .......... .......... .......... .......... .......... .......... 553 TCTTTCTTGT TCTTGTGCAG ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 17273 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 593 CACGGACATC AGGGCTGGAG GCTTTTCACT TGTATCTGGT TACATGCT 17321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CACGGACATC AGGGCTGGAG GCTTTTCACT TGTATCTGGT TACATGCT 641 hqPGS_C08HBa0197J17.1+_SGN-E301818+ (14574 15126,17234 17321) ******************************************************************************** EST sequence 56 +strand 709 n (File: SGN-E545811+) 1 CCTTAGCTGT TAAAAAAACT TCTCACAACC CCTAAAAATC CTCTCTTTTT TCAGTTTTAA 61 TTCTTCCCCA ATTCTTGAAA ATTCATTTCT AAAGCTTTCT TCATCTCTGC TTCAAAGCTA 121 CTTCACCCCA CCCACCCCCA CAATATAAAT AAACTTTGAA GAAATTGTTG AGTTTGTTCA 181 GTTTTTCTGA AATCAAGAAT GATGGGTAAT AGAGATCTGG AGAGGGGAGG TGGAACAAAG 241 CCAAGAAATG GGAGTTACCA ACCACCCCCA ACAACAGCAG CACCTTACTA TATGGAAACT 301 TCTGAATCAC AGTGGACTTC TTGGCTAGTC CCTATGATTG TTGTAGCCAA TGTAGCTATG 361 TTTATTGTCA TCATGTTTGT TAACAATTGC CCAAGTAATA TCAATAATTT TGGCAGAGGT 421 GGAGGACGCC GCCAGTGTGT TGCCAGGTTT CTTGGGAGGC TTTCTTTTCA ACCTCTTCAA 481 GATAATCCAC TTTTTGGACC CTCTTCATCC ACACTACAAA ATTTGGGAGC TCTAGAATGG 541 GATAAAGTAG TGCACGGACA TCAGGGCTGG AGGCTTTTCA CTTGTATCTG GTTACATGCT 601 GGTGTTGTTC ATCTGCTTGC CAACATGTTG AGTTTGGTAT TCATTGGTAT TCGCCTCGAG 661 CAGCAGTTTG GATTTGTCCG GGTAGGGATT ATCTACCTTT TGTCAGGAA Predicted gene structure (within gDNA segment 14015 to 18337): Exon 1 14615 15126 ( 512 n); cDNA 1 512 ( 512 n); score: 0.996 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17397 ( 164 n); cDNA 513 676 ( 164 n); score: 0.994 Intron 2 17398 17723 ( 326 n); Pd: 0.964 (s: 1.00), Pa: 0.997 (s: 0) Exon 3 17724 17756 ( 33 n); cDNA 677 709 ( 33 n); score: 0.939 MATCH C08HBa0197J17.1+ SGN-E545811+ 0.996 709 1.000 C PGS_C08HBa0197J17.1+_SGN-E545811+ (14615 15126,17234 17397,17724 17756) Alignment (genomic DNA sequence = upper lines): CCTTAGCTGT TAAAAAAACT CCTCACAACC CCTAAAAATC CTCTCTTTTT TCAGTTTTAA 14674 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CCTTAGCTGT TAAAAAAACT TCTCACAACC CCTAAAAATC CTCTCTTTTT TCAGTTTTAA 60 TTCTTCCCCA ATTCTTGAAA ATTCATTTCT AAAGCTTTCT TCATCTCTGC TTCAAAGCTA 14734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCCCCA ATTCTTGAAA ATTCATTTCT AAAGCTTTCT TCATCTCTGC TTCAAAGCTA 120 CTTCACCCCA CCCACCCCCA CAATATAAAT AAACTTTGAA GAAATTGCTG AGTTTGTTCA 14794 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| CTTCACCCCA CCCACCCCCA CAATATAAAT AAACTTTGAA GAAATTGTTG AGTTTGTTCA 180 GTTTTTCTGA AATCAAGAAT GATGGGTAAT AGAGATCTGG AGAGGGGAGG TGGAACAAAG 14854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTCTGA AATCAAGAAT GATGGGTAAT AGAGATCTGG AGAGGGGAGG TGGAACAAAG 240 CCAAGAAATG GGAGTTACCA ACCACCCCCA ACAACAGCAG CACCTTACTA TATGGAAACT 14914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGAAATG GGAGTTACCA ACCACCCCCA ACAACAGCAG CACCTTACTA TATGGAAACT 300 TCTGAATCAC AGTGGACTTC TTGGCTAGTC CCTATGATTG TTGTAGCCAA TGTAGCTATG 14974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAATCAC AGTGGACTTC TTGGCTAGTC CCTATGATTG TTGTAGCCAA TGTAGCTATG 360 TTTATTGTCA TCATGTTTGT TAACAATTGC CCAAGTAATA TCAATAATTT TGGCAGAGGT 15034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTGTCA TCATGTTTGT TAACAATTGC CCAAGTAATA TCAATAATTT TGGCAGAGGT 420 GGAGGACGCC GCCAGTGTGT TGCCAGGTTT CTTGGGAGGC TTTCTTTTCA ACCTCTTCAA 15094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGACGCC GCCAGTGTGT TGCCAGGTTT CTTGGGAGGC TTTCTTTTCA ACCTCTTCAA 480 GATAATCCAC TTTTTGGACC CTCTTCATCC ACGTAAAGTT TAAAACTTTT TGATCTAGTT 15154 |||||||||| |||||||||| |||||||||| || GATAATCCAC TTTTTGGACC CTCTTCATCC AC........ .......... .......... 512 TTTGTAATGA TTGTTCTTTG TTTATGATTT TTCATGTTTA TTAGCCTGTT TGATTTGATT 15214 .......... .......... .......... .......... .......... .......... 512 GTGTTAATTG TTGCGTTGTA TAGCTTATGG AGGATGAAGG TTCTTGTTTA TTTGATGCAG 15274 .......... .......... .......... .......... .......... .......... 512 ATTTAGTGTG GTCATATGGA TTCTTGATTT CTATGGTTTT GTAAATCAAG AAAAGGAAAA 15334 .......... .......... .......... .......... .......... .......... 512 AGATTGAATT TTTAACATAG TGTAATTTCA CAAGTGGGGT GTGGGATGGT TAGATCATAG 15394 .......... .......... .......... .......... .......... .......... 512 GTGTATGTAG ACCTTATCAC TACCTTTGTG GGATAGAGAG GTTGTTTATG ACAAAAAGGG 15454 .......... .......... .......... .......... .......... .......... 512 AATTCCTTCG TGGGGGTAGA GAGGTTATAT CCGATAAAAG AAAATACCTT TGCAGGGTGG 15514 .......... .......... .......... .......... .......... .......... 512 AGAGGTTGTT TCCGATAAAT GGAAATACCT TTGTTGGATA GAGAGGCTGT TTTCGATGAA 15574 .......... .......... .......... .......... .......... .......... 512 AGGAAATACA TTTGTGGGAT AGAGAGGTTG TTTCTGCTAA AAGGAAATAC CTTTGTGGGG 15634 .......... .......... .......... .......... .......... .......... 512 GTAGAGAGGC TGTTTCCGAT GAAAGGAAAC ACCTTTATGG TGTAGAGATG CTTTTAAGAT 15694 .......... .......... .......... .......... .......... .......... 512 GATTACATTA ATTCATAGAA GGAAATATTG TTTGTTTTTA GTAAAACACT AACTATCTTG 15754 .......... .......... .......... .......... .......... .......... 512 GATTTGTTTG TAGCTAATTC GTGATTTCAG TTACTTGTTG TGTTTCTTGT CTTGTTTAAA 15814 .......... .......... .......... .......... .......... .......... 512 CAAAGACATT TCAGCTGGCA GAAGTGGATT TAGGATGTGA ATTTTATGGC TAGAGTATGA 15874 .......... .......... .......... .......... .......... .......... 512 AAGTACATCA CAACCCATTA TAGGGTATGA AATCTATTAC ACGAACTTAT TTGGTGGCTT 15934 .......... .......... .......... .......... .......... .......... 512 TTTAAAACAC GTATGCGGTC TGAGCTAAAC TTGCTGGATT CGGACAAACC ATAACTCCTA 15994 .......... .......... .......... .......... .......... .......... 512 TGATACATTC GCTTGCCTGA TGAGAGTTTC TAATATTTCT CTTCGCCCCT TCATTCATCT 16054 .......... .......... .......... .......... .......... .......... 512 GATATTGTTA TATAAGGTTT TAAATTGGGA CGCTTAGGAG GCCAAGCATA GTTTGAGAGT 16114 .......... .......... .......... .......... .......... .......... 512 GCTGTATTGC CTGCTTTAAT TGCTAATCAA TTCTGCTAAT GTTTAGAACT CTTGCCTCAA 16174 .......... .......... .......... .......... .......... .......... 512 GCATGCTTTT TGACATCTAA AATTTGCTTT CTAACTCCTA ATTGAGCTTA TTTGGATCCT 16234 .......... .......... .......... .......... .......... .......... 512 TTTAGTATTA ATTCTAGAAT CGTTTCCTTT GTAATGTTGC AATGATGCTG TTGCTAGATC 16294 .......... .......... .......... .......... .......... .......... 512 AGTAATATTT CTTTTAACCT CTTAATGCTA ATAATGCTTG TTCGATCATG TCAAGTTGCA 16354 .......... .......... .......... .......... .......... .......... 512 TATACTGGCT GTAACGTCTT GGAAATTTTC TTCGATTAAT GAATCCTCAT TATTGTTATG 16414 .......... .......... .......... .......... .......... .......... 512 CTGTTTGGAC TTCTGCTGAT ATAATGAACC CACACTTGCA TGGGGGTCCA GGCAAGATAT 16474 .......... .......... .......... .......... .......... .......... 512 GCCAGAGGTA TTAGGTAATA GATGTAGTCA AAAGCTTATG GCAATAAACA TGATATTATC 16534 .......... .......... .......... .......... .......... .......... 512 ACAAGAATGG GCTGTAAGCT GTAGATTGCT GTAAGTTCTT CAATGAAAGT GAGGCATCAA 16594 .......... .......... .......... .......... .......... .......... 512 TATATACATA AAAAAAGAAC TATTTGAATA ATACATTCAA ATGGGATTTG CATTTGGGCA 16654 .......... .......... .......... .......... .......... .......... 512 ATGACTAGTT CTTCCAAACA TCAGACAAAC GAAATAGTTG AGAATTTACT TGTTTGCTAC 16714 .......... .......... .......... .......... .......... .......... 512 TAAATTATGA AACACTTCCT CTCTTTCCCT GCACCTGCAA ATCAAACCTT CTTCCATTTT 16774 .......... .......... .......... .......... .......... .......... 512 TAGAGATGTG AACGAGTTTA CAGTTGGATG GAACGAACAT TTATTAACCC CTTGGTAAAA 16834 .......... .......... .......... .......... .......... .......... 512 TTTTACAAAA TTAAGCACAA ATAGGAGAGT GCTTTTGTCG GAAACTTTAC AGCAATATCT 16894 .......... .......... .......... .......... .......... .......... 512 AAGGGAGAAT TCCCTTCCGC CATCTTAAGA GTGTTTGTGT ACATGGAGGG AATTGAATAG 16954 .......... .......... .......... .......... .......... .......... 512 CCTTTCTTTT TCTGGCATTT TGGAGATAAG TAGATCCGTT GGGATAGCGG TTGTGATGCA 17014 .......... .......... .......... .......... .......... .......... 512 ATAGTTGTTG CTATATTGGT TCCATTGAGT ATCAAGTCTT CTGGAGTTAA ATGGGTGAAT 17074 .......... .......... .......... .......... .......... .......... 512 GTGCTATTGC TGACGTCCTA CTTGCTGCTA TGCCACGCAC CGATATCACT CATACTGGAA 17134 .......... .......... .......... .......... .......... .......... 512 AGATAAAATA AAATGAAATA GAAACCAAAA GGCAAAAAAT GGAAGACAGA TTGATATATA 17194 .......... .......... .......... .......... .......... .......... 512 TGAACTGCTA TATATTCATT CTTTCTTGTT CTTGTGCAGA CTACAAAATT TGGGAGCTCT 17254 | |||||||||| |||||||||| .......... .......... .......... .........A CTACAAAATT TGGGAGCTCT 533 AGAATGGGAT AAAGTAGTGC ACGGACATCA GGGCTGGAGG CTTTTCACTT GTATCTGGTT 17314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATGGGAT AAAGTAGTGC ACGGACATCA GGGCTGGAGG CTTTTCACTT GTATCTGGTT 593 ACATGCTGGT GTTGTTCATC TGCTTGCAAA CATGTTGAGT TTGGTATTCA TTGGTATTCG 17374 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ACATGCTGGT GTTGTTCATC TGCTTGCCAA CATGTTGAGT TTGGTATTCA TTGGTATTCG 653 CCTCGAGCAG CAGTTTGGAT TTGGTACAAT TCTCCTCCCT GTGCCCTCAA ATATTTCTTC 17434 |||||||||| |||||||||| ||| CCTCGAGCAG CAGTTTGGAT TTG....... .......... .......... .......... 676 ATGTTCTTTT GGATAACACT AGTACACAAC AAATGTCTTT TTATGCATAA GCAATTCATT 17494 .......... .......... .......... .......... .......... .......... 676 CTACTTTCCT CTAAATTGTG CCCGTGTCTA GCTTCCTCGG CTCCGTTTGT CATTACAGTT 17554 .......... .......... .......... .......... .......... .......... 676 CATCTGCTGA AATAGAAGTA CTGTTTTTAC TTGCAATCTC TTTAACATCA ACAATTTCAG 17614 .......... .......... .......... .......... .......... .......... 676 TCACTTCTTT CTGAAATATA ACCCCACCTT CAATTTTCTT AACCTTGAGC TGACTAGTGT 17674 .......... .......... .......... .......... .......... .......... 676 CTTAATTCAC TTTTTGTTCT TATATTTATA TCTCTAATGT TATGTGCAGT CCGGGTGGGG 17734 | |||||| ||| .......... .......... .......... .......... .........T CCGGGTAGGG 687 ATTATCTACG TTTTGTCAGG AA 17756 ||||||||| |||||||||| || ATTATCTACC TTTTGTCAGG AA 709 hqPGS_C08HBa0197J17.1+_SGN-E545811+ (14615 15126,17234 17397,17724 17756) ******************************************************************************** EST sequence 61 +strand 546 n (File: SGN-E301196+) 1 GTTAAAAAAA CTCCTCACAA CCCCTAAAAA TCCTCTCTTT TTTCAGGGGT AATTCTTCCC 61 CAATTCTTGA AAATTCATTT CTAAAGCTTT CTTCATCTCT GCTTCAAAGC TACTTCACCC 121 CACCCACCCC CACAATATAA ATAAACTTTG AAGAAATTGC TGAGTTTGTT CAGTTTTTCT 181 GAAATCAAGA ATGATGGGTA ATAGAGATCT GGAGAGGGGA GGTGGAACAA AGCCAAGAAA 241 TGGGAGTTAC CAACCACCCC CAACAACAGC AGCACCTTAC TATATGGAAA CTTCTGAATC 301 ACAGTGGACT TCTTGGCTAG TCCCTATGAT TGTTGTAGCC AATGTAGCTA TGTTTATTGT 361 CATCATGTTT GTTAACAATT GCCCAAGTAA TATCAATAAT TTTGGCAAAG GTGGAGGACG 421 CCGCCAGTGT GTTGCCAGGT TTCTTGGGAG GCTTTCTTTT CAACCTCTTC AAGATAATCC 481 ACTTTTTGGA CCCTCTTCAT CCACACTACA AAATTTGGGA GCTCTAGAAT GGGATAAAGT 541 AGTGCA Predicted gene structure (within gDNA segment 14023 to 17885): Exon 1 14623 15126 ( 504 n); cDNA 1 504 ( 504 n); score: 0.992 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17275 ( 42 n); cDNA 505 546 ( 42 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E301196+ 0.992 546 1.000 C PGS_C08HBa0197J17.1+_SGN-E301196+ (14623 15126,17234 17275) Alignment (genomic DNA sequence = upper lines): GTTAAAAAAA CTCCTCACAA CCCCTAAAAA TCCTCTCTTT TTTCAGTTTT AATTCTTCCC 14682 |||||||||| |||||||||| |||||||||| |||||||||| |||||| | |||||||||| GTTAAAAAAA CTCCTCACAA CCCCTAAAAA TCCTCTCTTT TTTCAGGGGT AATTCTTCCC 60 CAATTCTTGA AAATTCATTT CTAAAGCTTT CTTCATCTCT GCTTCAAAGC TACTTCACCC 14742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTCTTGA AAATTCATTT CTAAAGCTTT CTTCATCTCT GCTTCAAAGC TACTTCACCC 120 CACCCACCCC CACAATATAA ATAAACTTTG AAGAAATTGC TGAGTTTGTT CAGTTTTTCT 14802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCCACCCC CACAATATAA ATAAACTTTG AAGAAATTGC TGAGTTTGTT CAGTTTTTCT 180 GAAATCAAGA ATGATGGGTA ATAGAGATCT GGAGAGGGGA GGTGGAACAA AGCCAAGAAA 14862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATCAAGA ATGATGGGTA ATAGAGATCT GGAGAGGGGA GGTGGAACAA AGCCAAGAAA 240 TGGGAGTTAC CAACCACCCC CAACAACAGC AGCACCTTAC TATATGGAAA CTTCTGAATC 14922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAGTTAC CAACCACCCC CAACAACAGC AGCACCTTAC TATATGGAAA CTTCTGAATC 300 ACAGTGGACT TCTTGGCTAG TCCCTATGAT TGTTGTAGCC AATGTAGCTA TGTTTATTGT 14982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGTGGACT TCTTGGCTAG TCCCTATGAT TGTTGTAGCC AATGTAGCTA TGTTTATTGT 360 CATCATGTTT GTTAACAATT GCCCAAGTAA TATCAATAAT TTTGGCAGAG GTGGAGGACG 15042 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| CATCATGTTT GTTAACAATT GCCCAAGTAA TATCAATAAT TTTGGCAAAG GTGGAGGACG 420 CCGCCAGTGT GTTGCCAGGT TTCTTGGGAG GCTTTCTTTT CAACCTCTTC AAGATAATCC 15102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCAGTGT GTTGCCAGGT TTCTTGGGAG GCTTTCTTTT CAACCTCTTC AAGATAATCC 480 ACTTTTTGGA CCCTCTTCAT CCACGTAAAG TTTAAAACTT TTTGATCTAG TTTTTGTAAT 15162 |||||||||| |||||||||| |||| ACTTTTTGGA CCCTCTTCAT CCAC...... .......... .......... .......... 504 GATTGTTCTT TGTTTATGAT TTTTCATGTT TATTAGCCTG TTTGATTTGA TTGTGTTAAT 15222 .......... .......... .......... .......... .......... .......... 504 TGTTGCGTTG TATAGCTTAT GGAGGATGAA GGTTCTTGTT TATTTGATGC AGATTTAGTG 15282 .......... .......... .......... .......... .......... .......... 504 TGGTCATATG GATTCTTGAT TTCTATGGTT TTGTAAATCA AGAAAAGGAA AAAGATTGAA 15342 .......... .......... .......... .......... .......... .......... 504 TTTTTAACAT AGTGTAATTT CACAAGTGGG GTGTGGGATG GTTAGATCAT AGGTGTATGT 15402 .......... .......... .......... .......... .......... .......... 504 AGACCTTATC ACTACCTTTG TGGGATAGAG AGGTTGTTTA TGACAAAAAG GGAATTCCTT 15462 .......... .......... .......... .......... .......... .......... 504 CGTGGGGGTA GAGAGGTTAT ATCCGATAAA AGAAAATACC TTTGCAGGGT GGAGAGGTTG 15522 .......... .......... .......... .......... .......... .......... 504 TTTCCGATAA ATGGAAATAC CTTTGTTGGA TAGAGAGGCT GTTTTCGATG AAAGGAAATA 15582 .......... .......... .......... .......... .......... .......... 504 CATTTGTGGG ATAGAGAGGT TGTTTCTGCT AAAAGGAAAT ACCTTTGTGG GGGTAGAGAG 15642 .......... .......... .......... .......... .......... .......... 504 GCTGTTTCCG ATGAAAGGAA ACACCTTTAT GGTGTAGAGA TGCTTTTAAG ATGATTACAT 15702 .......... .......... .......... .......... .......... .......... 504 TAATTCATAG AAGGAAATAT TGTTTGTTTT TAGTAAAACA CTAACTATCT TGGATTTGTT 15762 .......... .......... .......... .......... .......... .......... 504 TGTAGCTAAT TCGTGATTTC AGTTACTTGT TGTGTTTCTT GTCTTGTTTA AACAAAGACA 15822 .......... .......... .......... .......... .......... .......... 504 TTTCAGCTGG CAGAAGTGGA TTTAGGATGT GAATTTTATG GCTAGAGTAT GAAAGTACAT 15882 .......... .......... .......... .......... .......... .......... 504 CACAACCCAT TATAGGGTAT GAAATCTATT ACACGAACTT ATTTGGTGGC TTTTTAAAAC 15942 .......... .......... .......... .......... .......... .......... 504 ACGTATGCGG TCTGAGCTAA ACTTGCTGGA TTCGGACAAA CCATAACTCC TATGATACAT 16002 .......... .......... .......... .......... .......... .......... 504 TCGCTTGCCT GATGAGAGTT TCTAATATTT CTCTTCGCCC CTTCATTCAT CTGATATTGT 16062 .......... .......... .......... .......... .......... .......... 504 TATATAAGGT TTTAAATTGG GACGCTTAGG AGGCCAAGCA TAGTTTGAGA GTGCTGTATT 16122 .......... .......... .......... .......... .......... .......... 504 GCCTGCTTTA ATTGCTAATC AATTCTGCTA ATGTTTAGAA CTCTTGCCTC AAGCATGCTT 16182 .......... .......... .......... .......... .......... .......... 504 TTTGACATCT AAAATTTGCT TTCTAACTCC TAATTGAGCT TATTTGGATC CTTTTAGTAT 16242 .......... .......... .......... .......... .......... .......... 504 TAATTCTAGA ATCGTTTCCT TTGTAATGTT GCAATGATGC TGTTGCTAGA TCAGTAATAT 16302 .......... .......... .......... .......... .......... .......... 504 TTCTTTTAAC CTCTTAATGC TAATAATGCT TGTTCGATCA TGTCAAGTTG CATATACTGG 16362 .......... .......... .......... .......... .......... .......... 504 CTGTAACGTC TTGGAAATTT TCTTCGATTA ATGAATCCTC ATTATTGTTA TGCTGTTTGG 16422 .......... .......... .......... .......... .......... .......... 504 ACTTCTGCTG ATATAATGAA CCCACACTTG CATGGGGGTC CAGGCAAGAT ATGCCAGAGG 16482 .......... .......... .......... .......... .......... .......... 504 TATTAGGTAA TAGATGTAGT CAAAAGCTTA TGGCAATAAA CATGATATTA TCACAAGAAT 16542 .......... .......... .......... .......... .......... .......... 504 GGGCTGTAAG CTGTAGATTG CTGTAAGTTC TTCAATGAAA GTGAGGCATC AATATATACA 16602 .......... .......... .......... .......... .......... .......... 504 TAAAAAAAGA ACTATTTGAA TAATACATTC AAATGGGATT TGCATTTGGG CAATGACTAG 16662 .......... .......... .......... .......... .......... .......... 504 TTCTTCCAAA CATCAGACAA ACGAAATAGT TGAGAATTTA CTTGTTTGCT ACTAAATTAT 16722 .......... .......... .......... .......... .......... .......... 504 GAAACACTTC CTCTCTTTCC CTGCACCTGC AAATCAAACC TTCTTCCATT TTTAGAGATG 16782 .......... .......... .......... .......... .......... .......... 504 TGAACGAGTT TACAGTTGGA TGGAACGAAC ATTTATTAAC CCCTTGGTAA AATTTTACAA 16842 .......... .......... .......... .......... .......... .......... 504 AATTAAGCAC AAATAGGAGA GTGCTTTTGT CGGAAACTTT ACAGCAATAT CTAAGGGAGA 16902 .......... .......... .......... .......... .......... .......... 504 ATTCCCTTCC GCCATCTTAA GAGTGTTTGT GTACATGGAG GGAATTGAAT AGCCTTTCTT 16962 .......... .......... .......... .......... .......... .......... 504 TTTCTGGCAT TTTGGAGATA AGTAGATCCG TTGGGATAGC GGTTGTGATG CAATAGTTGT 17022 .......... .......... .......... .......... .......... .......... 504 TGCTATATTG GTTCCATTGA GTATCAAGTC TTCTGGAGTT AAATGGGTGA ATGTGCTATT 17082 .......... .......... .......... .......... .......... .......... 504 GCTGACGTCC TACTTGCTGC TATGCCACGC ACCGATATCA CTCATACTGG AAAGATAAAA 17142 .......... .......... .......... .......... .......... .......... 504 TAAAATGAAA TAGAAACCAA AAGGCAAAAA ATGGAAGACA GATTGATATA TATGAACTGC 17202 .......... .......... .......... .......... .......... .......... 504 TATATATTCA TTCTTTCTTG TTCTTGTGCA GACTACAAAA TTTGGGAGCT CTAGAATGGG 17262 ||||||||| |||||||||| |||||||||| .......... .......... .......... .ACTACAAAA TTTGGGAGCT CTAGAATGGG 533 ATAAAGTAGT GCA 17275 |||||||||| ||| ATAAAGTAGT GCA 546 hqPGS_C08HBa0197J17.1+_SGN-E301196+ (14623 15126,17234 17275) ******************************************************************************** EST sequence 7 +strand 618 n (File: SGN-E250525+) 1 AACTCCTCAC AACCCCTAAA AATCCTCTCT TTTTTCAGTT TTAATTCTTC CCCAATTCTT 61 GAAAATTCAT TTCTAAAGCT TTCTTCATCT CTGCTTCAAA GCTACTTCAC CCCACCCACC 121 CCCACAATAT AAATAAACTT TGAAGAAATT GCTGAGTTTG TTCAGTTTTT CTGAAATCAA 181 GAATGATGGG TAATAGAGAT CTGGAGAGGG GAGGTGGAAC AAAGCCAAGA AATGGGAGTT 241 ACCAACCACC CCCAACAACA GCAGCACCTT ACTATATGGA AACTTCTGAA TCACAGTGGA 301 CTTCTTGGCT AGTCCCTATG ATTGTTGTAG CCAATGTAGC TATGTTTATT GTCATCATGT 361 TTGTTAACAA TTGCCCAAGT AATATCAATA ATTTTGGCAG AGGTGGAGGA CGCCGCCAGT 421 GTGTTGCCAG GTTTCTTGGG AGGCTTTCTT TTCAACCTCT TCAAGATAAT CCACTTTTTG 481 GACCCTCTTC ATCCACACTA CAAAATTTGG GAGCTCTAGA ATGGGATAAA GTAGTGCACG 541 GACATCAGGG CTGGAGGCTT TTCACTTGTA TCTGGTTACA TGCTGGTGGT TGTCATCTGC 601 TTGCAAACAT GTTGAGTT Predicted gene structure (within gDNA segment 14031 to 18235): Exon 1 14631 15126 ( 496 n); cDNA 1 496 ( 496 n); score: 1.000 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17355 ( 122 n); cDNA 497 618 ( 122 n); score: 0.975 MATCH C08HBa0197J17.1+ SGN-E250525+ 0.995 618 1.000 C PGS_C08HBa0197J17.1+_SGN-E250525+ (14631 15126,17234 17355) Alignment (genomic DNA sequence = upper lines): AACTCCTCAC AACCCCTAAA AATCCTCTCT TTTTTCAGTT TTAATTCTTC CCCAATTCTT 14690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCCTCAC AACCCCTAAA AATCCTCTCT TTTTTCAGTT TTAATTCTTC CCCAATTCTT 60 GAAAATTCAT TTCTAAAGCT TTCTTCATCT CTGCTTCAAA GCTACTTCAC CCCACCCACC 14750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATTCAT TTCTAAAGCT TTCTTCATCT CTGCTTCAAA GCTACTTCAC CCCACCCACC 120 CCCACAATAT AAATAAACTT TGAAGAAATT GCTGAGTTTG TTCAGTTTTT CTGAAATCAA 14810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCACAATAT AAATAAACTT TGAAGAAATT GCTGAGTTTG TTCAGTTTTT CTGAAATCAA 180 GAATGATGGG TAATAGAGAT CTGGAGAGGG GAGGTGGAAC AAAGCCAAGA AATGGGAGTT 14870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGATGGG TAATAGAGAT CTGGAGAGGG GAGGTGGAAC AAAGCCAAGA AATGGGAGTT 240 ACCAACCACC CCCAACAACA GCAGCACCTT ACTATATGGA AACTTCTGAA TCACAGTGGA 14930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAACCACC CCCAACAACA GCAGCACCTT ACTATATGGA AACTTCTGAA TCACAGTGGA 300 CTTCTTGGCT AGTCCCTATG ATTGTTGTAG CCAATGTAGC TATGTTTATT GTCATCATGT 14990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTGGCT AGTCCCTATG ATTGTTGTAG CCAATGTAGC TATGTTTATT GTCATCATGT 360 TTGTTAACAA TTGCCCAAGT AATATCAATA ATTTTGGCAG AGGTGGAGGA CGCCGCCAGT 15050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAACAA TTGCCCAAGT AATATCAATA ATTTTGGCAG AGGTGGAGGA CGCCGCCAGT 420 GTGTTGCCAG GTTTCTTGGG AGGCTTTCTT TTCAACCTCT TCAAGATAAT CCACTTTTTG 15110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTGCCAG GTTTCTTGGG AGGCTTTCTT TTCAACCTCT TCAAGATAAT CCACTTTTTG 480 GACCCTCTTC ATCCACGTAA AGTTTAAAAC TTTTTGATCT AGTTTTTGTA ATGATTGTTC 15170 |||||||||| |||||| GACCCTCTTC ATCCAC.... .......... .......... .......... .......... 496 TTTGTTTATG ATTTTTCATG TTTATTAGCC TGTTTGATTT GATTGTGTTA ATTGTTGCGT 15230 .......... .......... .......... .......... .......... .......... 496 TGTATAGCTT ATGGAGGATG AAGGTTCTTG TTTATTTGAT GCAGATTTAG TGTGGTCATA 15290 .......... .......... .......... .......... .......... .......... 496 TGGATTCTTG ATTTCTATGG TTTTGTAAAT CAAGAAAAGG AAAAAGATTG AATTTTTAAC 15350 .......... .......... .......... .......... .......... .......... 496 ATAGTGTAAT TTCACAAGTG GGGTGTGGGA TGGTTAGATC ATAGGTGTAT GTAGACCTTA 15410 .......... .......... .......... .......... .......... .......... 496 TCACTACCTT TGTGGGATAG AGAGGTTGTT TATGACAAAA AGGGAATTCC TTCGTGGGGG 15470 .......... .......... .......... .......... .......... .......... 496 TAGAGAGGTT ATATCCGATA AAAGAAAATA CCTTTGCAGG GTGGAGAGGT TGTTTCCGAT 15530 .......... .......... .......... .......... .......... .......... 496 AAATGGAAAT ACCTTTGTTG GATAGAGAGG CTGTTTTCGA TGAAAGGAAA TACATTTGTG 15590 .......... .......... .......... .......... .......... .......... 496 GGATAGAGAG GTTGTTTCTG CTAAAAGGAA ATACCTTTGT GGGGGTAGAG AGGCTGTTTC 15650 .......... .......... .......... .......... .......... .......... 496 CGATGAAAGG AAACACCTTT ATGGTGTAGA GATGCTTTTA AGATGATTAC ATTAATTCAT 15710 .......... .......... .......... .......... .......... .......... 496 AGAAGGAAAT ATTGTTTGTT TTTAGTAAAA CACTAACTAT CTTGGATTTG TTTGTAGCTA 15770 .......... .......... .......... .......... .......... .......... 496 ATTCGTGATT TCAGTTACTT GTTGTGTTTC TTGTCTTGTT TAAACAAAGA CATTTCAGCT 15830 .......... .......... .......... .......... .......... .......... 496 GGCAGAAGTG GATTTAGGAT GTGAATTTTA TGGCTAGAGT ATGAAAGTAC ATCACAACCC 15890 .......... .......... .......... .......... .......... .......... 496 ATTATAGGGT ATGAAATCTA TTACACGAAC TTATTTGGTG GCTTTTTAAA ACACGTATGC 15950 .......... .......... .......... .......... .......... .......... 496 GGTCTGAGCT AAACTTGCTG GATTCGGACA AACCATAACT CCTATGATAC ATTCGCTTGC 16010 .......... .......... .......... .......... .......... .......... 496 CTGATGAGAG TTTCTAATAT TTCTCTTCGC CCCTTCATTC ATCTGATATT GTTATATAAG 16070 .......... .......... .......... .......... .......... .......... 496 GTTTTAAATT GGGACGCTTA GGAGGCCAAG CATAGTTTGA GAGTGCTGTA TTGCCTGCTT 16130 .......... .......... .......... .......... .......... .......... 496 TAATTGCTAA TCAATTCTGC TAATGTTTAG AACTCTTGCC TCAAGCATGC TTTTTGACAT 16190 .......... .......... .......... .......... .......... .......... 496 CTAAAATTTG CTTTCTAACT CCTAATTGAG CTTATTTGGA TCCTTTTAGT ATTAATTCTA 16250 .......... .......... .......... .......... .......... .......... 496 GAATCGTTTC CTTTGTAATG TTGCAATGAT GCTGTTGCTA GATCAGTAAT ATTTCTTTTA 16310 .......... .......... .......... .......... .......... .......... 496 ACCTCTTAAT GCTAATAATG CTTGTTCGAT CATGTCAAGT TGCATATACT GGCTGTAACG 16370 .......... .......... .......... .......... .......... .......... 496 TCTTGGAAAT TTTCTTCGAT TAATGAATCC TCATTATTGT TATGCTGTTT GGACTTCTGC 16430 .......... .......... .......... .......... .......... .......... 496 TGATATAATG AACCCACACT TGCATGGGGG TCCAGGCAAG ATATGCCAGA GGTATTAGGT 16490 .......... .......... .......... .......... .......... .......... 496 AATAGATGTA GTCAAAAGCT TATGGCAATA AACATGATAT TATCACAAGA ATGGGCTGTA 16550 .......... .......... .......... .......... .......... .......... 496 AGCTGTAGAT TGCTGTAAGT TCTTCAATGA AAGTGAGGCA TCAATATATA CATAAAAAAA 16610 .......... .......... .......... .......... .......... .......... 496 GAACTATTTG AATAATACAT TCAAATGGGA TTTGCATTTG GGCAATGACT AGTTCTTCCA 16670 .......... .......... .......... .......... .......... .......... 496 AACATCAGAC AAACGAAATA GTTGAGAATT TACTTGTTTG CTACTAAATT ATGAAACACT 16730 .......... .......... .......... .......... .......... .......... 496 TCCTCTCTTT CCCTGCACCT GCAAATCAAA CCTTCTTCCA TTTTTAGAGA TGTGAACGAG 16790 .......... .......... .......... .......... .......... .......... 496 TTTACAGTTG GATGGAACGA ACATTTATTA ACCCCTTGGT AAAATTTTAC AAAATTAAGC 16850 .......... .......... .......... .......... .......... .......... 496 ACAAATAGGA GAGTGCTTTT GTCGGAAACT TTACAGCAAT ATCTAAGGGA GAATTCCCTT 16910 .......... .......... .......... .......... .......... .......... 496 CCGCCATCTT AAGAGTGTTT GTGTACATGG AGGGAATTGA ATAGCCTTTC TTTTTCTGGC 16970 .......... .......... .......... .......... .......... .......... 496 ATTTTGGAGA TAAGTAGATC CGTTGGGATA GCGGTTGTGA TGCAATAGTT GTTGCTATAT 17030 .......... .......... .......... .......... .......... .......... 496 TGGTTCCATT GAGTATCAAG TCTTCTGGAG TTAAATGGGT GAATGTGCTA TTGCTGACGT 17090 .......... .......... .......... .......... .......... .......... 496 CCTACTTGCT GCTATGCCAC GCACCGATAT CACTCATACT GGAAAGATAA AATAAAATGA 17150 .......... .......... .......... .......... .......... .......... 496 AATAGAAACC AAAAGGCAAA AAATGGAAGA CAGATTGATA TATATGAACT GCTATATATT 17210 .......... .......... .......... .......... .......... .......... 496 CATTCTTTCT TGTTCTTGTG CAGACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA 17270 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA 533 GTGCACGGAC ATCAGGGCTG GAGGCTTTTC ACTTGTATCT GGTTACATGC TGGTGTTGTT 17330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| | | GTGCACGGAC ATCAGGGCTG GAGGCTTTTC ACTTGTATCT GGTTACATGC TGGTGGTTGT 593 CATCTGCTTG CAAACATGTT GAGTT 17355 |||||||||| |||||||||| ||||| CATCTGCTTG CAAACATGTT GAGTT 618 hqPGS_C08HBa0197J17.1+_SGN-E250525+ (14631 15126,17234 17355) ******************************************************************************** EST sequence 11 +strand 753 n (File: SGN-E263215+) 1 TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 61 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 121 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 181 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 241 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 301 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 361 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 421 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 481 CCTCTTCATC CACACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA GTGCACGGAC 541 ATCAGGGCTG GAGGCTTTTC ACTTGTATCT GGTTACATGG CTGGTGTTGT TCATCTGCTT 601 GCAAACATGG TTGAGTTTGG TATTCATTGG TATTCGCCTC GAGCAGCAGT TTGGATTTGT 661 CGGGGGTGGG GATTATCTAC GTTTTGTCAG AAATTGGTGG CAGTGTTCTT TCTTGCCTTT 721 TCATTCAGGG TAGCATCTCT GTTGGGAGCT TCT Predicted gene structure (within gDNA segment 14034 to 18498): Exon 1 14634 15126 ( 493 n); cDNA 1 493 ( 493 n); score: 1.000 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17397 ( 164 n); cDNA 494 659 ( 166 n); score: 0.970 Intron 2 17398 17723 ( 326 n); Pd: 0.964 (s: 1.00), Pa: 0.997 (s: 0.91) Exon 3 17724 17815 ( 92 n); cDNA 660 753 ( 94 n); score: 0.913 MATCH C08HBa0197J17.1+ SGN-E263215+ 0.983 749 0.995 C PGS_C08HBa0197J17.1+_SGN-E263215+ (14634 15126,17234 17397,17724 17815) Alignment (genomic DNA sequence = upper lines): TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 14693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 60 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 14753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 120 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 14813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 180 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 14873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 240 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 14933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 300 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 14993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 360 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 15053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 420 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 15113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 480 CCTCTTCATC CACGTAAAGT TTAAAACTTT TTGATCTAGT TTTTGTAATG ATTGTTCTTT 15173 |||||||||| ||| CCTCTTCATC CAC....... .......... .......... .......... .......... 493 GTTTATGATT TTTCATGTTT ATTAGCCTGT TTGATTTGAT TGTGTTAATT GTTGCGTTGT 15233 .......... .......... .......... .......... .......... .......... 493 ATAGCTTATG GAGGATGAAG GTTCTTGTTT ATTTGATGCA GATTTAGTGT GGTCATATGG 15293 .......... .......... .......... .......... .......... .......... 493 ATTCTTGATT TCTATGGTTT TGTAAATCAA GAAAAGGAAA AAGATTGAAT TTTTAACATA 15353 .......... .......... .......... .......... .......... .......... 493 GTGTAATTTC ACAAGTGGGG TGTGGGATGG TTAGATCATA GGTGTATGTA GACCTTATCA 15413 .......... .......... .......... .......... .......... .......... 493 CTACCTTTGT GGGATAGAGA GGTTGTTTAT GACAAAAAGG GAATTCCTTC GTGGGGGTAG 15473 .......... .......... .......... .......... .......... .......... 493 AGAGGTTATA TCCGATAAAA GAAAATACCT TTGCAGGGTG GAGAGGTTGT TTCCGATAAA 15533 .......... .......... .......... .......... .......... .......... 493 TGGAAATACC TTTGTTGGAT AGAGAGGCTG TTTTCGATGA AAGGAAATAC ATTTGTGGGA 15593 .......... .......... .......... .......... .......... .......... 493 TAGAGAGGTT GTTTCTGCTA AAAGGAAATA CCTTTGTGGG GGTAGAGAGG CTGTTTCCGA 15653 .......... .......... .......... .......... .......... .......... 493 TGAAAGGAAA CACCTTTATG GTGTAGAGAT GCTTTTAAGA TGATTACATT AATTCATAGA 15713 .......... .......... .......... .......... .......... .......... 493 AGGAAATATT GTTTGTTTTT AGTAAAACAC TAACTATCTT GGATTTGTTT GTAGCTAATT 15773 .......... .......... .......... .......... .......... .......... 493 CGTGATTTCA GTTACTTGTT GTGTTTCTTG TCTTGTTTAA ACAAAGACAT TTCAGCTGGC 15833 .......... .......... .......... .......... .......... .......... 493 AGAAGTGGAT TTAGGATGTG AATTTTATGG CTAGAGTATG AAAGTACATC ACAACCCATT 15893 .......... .......... .......... .......... .......... .......... 493 ATAGGGTATG AAATCTATTA CACGAACTTA TTTGGTGGCT TTTTAAAACA CGTATGCGGT 15953 .......... .......... .......... .......... .......... .......... 493 CTGAGCTAAA CTTGCTGGAT TCGGACAAAC CATAACTCCT ATGATACATT CGCTTGCCTG 16013 .......... .......... .......... .......... .......... .......... 493 ATGAGAGTTT CTAATATTTC TCTTCGCCCC TTCATTCATC TGATATTGTT ATATAAGGTT 16073 .......... .......... .......... .......... .......... .......... 493 TTAAATTGGG ACGCTTAGGA GGCCAAGCAT AGTTTGAGAG TGCTGTATTG CCTGCTTTAA 16133 .......... .......... .......... .......... .......... .......... 493 TTGCTAATCA ATTCTGCTAA TGTTTAGAAC TCTTGCCTCA AGCATGCTTT TTGACATCTA 16193 .......... .......... .......... .......... .......... .......... 493 AAATTTGCTT TCTAACTCCT AATTGAGCTT ATTTGGATCC TTTTAGTATT AATTCTAGAA 16253 .......... .......... .......... .......... .......... .......... 493 TCGTTTCCTT TGTAATGTTG CAATGATGCT GTTGCTAGAT CAGTAATATT TCTTTTAACC 16313 .......... .......... .......... .......... .......... .......... 493 TCTTAATGCT AATAATGCTT GTTCGATCAT GTCAAGTTGC ATATACTGGC TGTAACGTCT 16373 .......... .......... .......... .......... .......... .......... 493 TGGAAATTTT CTTCGATTAA TGAATCCTCA TTATTGTTAT GCTGTTTGGA CTTCTGCTGA 16433 .......... .......... .......... .......... .......... .......... 493 TATAATGAAC CCACACTTGC ATGGGGGTCC AGGCAAGATA TGCCAGAGGT ATTAGGTAAT 16493 .......... .......... .......... .......... .......... .......... 493 AGATGTAGTC AAAAGCTTAT GGCAATAAAC ATGATATTAT CACAAGAATG GGCTGTAAGC 16553 .......... .......... .......... .......... .......... .......... 493 TGTAGATTGC TGTAAGTTCT TCAATGAAAG TGAGGCATCA ATATATACAT AAAAAAAGAA 16613 .......... .......... .......... .......... .......... .......... 493 CTATTTGAAT AATACATTCA AATGGGATTT GCATTTGGGC AATGACTAGT TCTTCCAAAC 16673 .......... .......... .......... .......... .......... .......... 493 ATCAGACAAA CGAAATAGTT GAGAATTTAC TTGTTTGCTA CTAAATTATG AAACACTTCC 16733 .......... .......... .......... .......... .......... .......... 493 TCTCTTTCCC TGCACCTGCA AATCAAACCT TCTTCCATTT TTAGAGATGT GAACGAGTTT 16793 .......... .......... .......... .......... .......... .......... 493 ACAGTTGGAT GGAACGAACA TTTATTAACC CCTTGGTAAA ATTTTACAAA ATTAAGCACA 16853 .......... .......... .......... .......... .......... .......... 493 AATAGGAGAG TGCTTTTGTC GGAAACTTTA CAGCAATATC TAAGGGAGAA TTCCCTTCCG 16913 .......... .......... .......... .......... .......... .......... 493 CCATCTTAAG AGTGTTTGTG TACATGGAGG GAATTGAATA GCCTTTCTTT TTCTGGCATT 16973 .......... .......... .......... .......... .......... .......... 493 TTGGAGATAA GTAGATCCGT TGGGATAGCG GTTGTGATGC AATAGTTGTT GCTATATTGG 17033 .......... .......... .......... .......... .......... .......... 493 TTCCATTGAG TATCAAGTCT TCTGGAGTTA AATGGGTGAA TGTGCTATTG CTGACGTCCT 17093 .......... .......... .......... .......... .......... .......... 493 ACTTGCTGCT ATGCCACGCA CCGATATCAC TCATACTGGA AAGATAAAAT AAAATGAAAT 17153 .......... .......... .......... .......... .......... .......... 493 AGAAACCAAA AGGCAAAAAA TGGAAGACAG ATTGATATAT ATGAACTGCT ATATATTCAT 17213 .......... .......... .......... .......... .......... .......... 493 TCTTTCTTGT TCTTGTGCAG ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 17273 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 533 CACGGACATC AGGGCTGGAG GCTTTTCACT TGTATCTGGT TACAT-GCTG GTGTTGTTCA 17332 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CACGGACATC AGGGCTGGAG GCTTTTCACT TGTATCTGGT TACATGGCTG GTGTTGTTCA 593 TCTGCTTGCA AACAT-GTTG AGTTTGGTAT TCATTGGTAT TCGCCTCGAG CAGCAGTTTG 17391 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTTGCA AACATGGTTG AGTTTGGTAT TCATTGGTAT TCGCCTCGAG CAGCAGTTTG 653 GATTTGGTAC AATTCTCCTC CCTGTGCCCT CAAATATTTC TTCATGTTCT TTTGGATAAC 17451 |||||| GATTTG.... .......... .......... .......... .......... .......... 659 ACTAGTACAC AACAAATGTC TTTTTATGCA TAAGCAATTC ATTCTACTTT CCTCTAAATT 17511 .......... .......... .......... .......... .......... .......... 659 GTGCCCGTGT CTAGCTTCCT CGGCTCCGTT TGTCATTACA GTTCATCTGC TGAAATAGAA 17571 .......... .......... .......... .......... .......... .......... 659 GTACTGTTTT TACTTGCAAT CTCTTTAACA TCAACAATTT CAGTCACTTC TTTCTGAAAT 17631 .......... .......... .......... .......... .......... .......... 659 ATAACCCCAC CTTCAATTTT CTTAACCTTG AGCTGACTAG TGTCTTAATT CACTTTTTGT 17691 .......... .......... .......... .......... .......... .......... 659 TCTTATATTT ATATCTCTAA TGTTATGTGC AGTC-CGGGT GGGGATTATC TACGTTTTGT 17750 || |||| |||||||||| |||||||||| .......... .......... .......... ..TCGGGGGT GGGGATTATC TACGTTTTGT 687 CAGGAATTGG TGGCAGTGTT CTTTCTTGCC TTTTCATTCA AGGTAGCATC TCTGTT-GGA 17809 ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| CAGAAATTGG TGGCAGTGTT CTTTCTTGCC TTTTCATTCA GGGTAGCATC TCTGTTGGGA 747 GCTTCT 17815 |||||| GCTTCT 753 hqPGS_C08HBa0197J17.1+_SGN-E263215+ (14634 15126,17234 17397,17724 17815) ******************************************************************************** EST sequence 4 +strand 610 n (File: SGN-E261982+) 1 TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 61 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 121 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 181 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 241 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 301 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 361 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 421 TTGCCAGGTT TCTTGAGAGG CTTTCTTTTC ACCTCTTCAA GATAATCCAC TTTTTGGACC 481 CTCTTCATCC ACACTACAAA ATTTGGGAGC TCTAGAATGG GGATAAGTAG TGCACGGACA 541 TCAGGGCTGG AGGCTTTTCA CTTGTATCTG GTTACATGCT GGTGTTGTTC ATCTGCTTGC 601 AAACATGTTG Predicted gene structure (within gDNA segment 14034 to 17961): Exon 1 14634 15126 ( 493 n); cDNA 1 492 ( 492 n); score: 0.996 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 0.98), Pa: 1.000 (s: 0.94) Exon 2 17234 17351 ( 118 n); cDNA 493 610 ( 118 n); score: 0.975 MATCH C08HBa0197J17.1+ SGN-E261982+ 0.992 611 1.002 C PGS_C08HBa0197J17.1+_SGN-E261982+ (14634 15126,17234 17351) Alignment (genomic DNA sequence = upper lines): TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 14693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 60 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 14753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 120 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 14813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 180 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 14873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 240 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 14933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 300 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 14993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 360 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 15053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 420 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 15113 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| TTGCCAGGTT TCTTGAGAGG CTTTCTTTTC -ACCTCTTCA AGATAATCCA CTTTTTGGAC 479 CCTCTTCATC CACGTAAAGT TTAAAACTTT TTGATCTAGT TTTTGTAATG ATTGTTCTTT 15173 |||||||||| ||| CCTCTTCATC CAC....... .......... .......... .......... .......... 492 GTTTATGATT TTTCATGTTT ATTAGCCTGT TTGATTTGAT TGTGTTAATT GTTGCGTTGT 15233 .......... .......... .......... .......... .......... .......... 492 ATAGCTTATG GAGGATGAAG GTTCTTGTTT ATTTGATGCA GATTTAGTGT GGTCATATGG 15293 .......... .......... .......... .......... .......... .......... 492 ATTCTTGATT TCTATGGTTT TGTAAATCAA GAAAAGGAAA AAGATTGAAT TTTTAACATA 15353 .......... .......... .......... .......... .......... .......... 492 GTGTAATTTC ACAAGTGGGG TGTGGGATGG TTAGATCATA GGTGTATGTA GACCTTATCA 15413 .......... .......... .......... .......... .......... .......... 492 CTACCTTTGT GGGATAGAGA GGTTGTTTAT GACAAAAAGG GAATTCCTTC GTGGGGGTAG 15473 .......... .......... .......... .......... .......... .......... 492 AGAGGTTATA TCCGATAAAA GAAAATACCT TTGCAGGGTG GAGAGGTTGT TTCCGATAAA 15533 .......... .......... .......... .......... .......... .......... 492 TGGAAATACC TTTGTTGGAT AGAGAGGCTG TTTTCGATGA AAGGAAATAC ATTTGTGGGA 15593 .......... .......... .......... .......... .......... .......... 492 TAGAGAGGTT GTTTCTGCTA AAAGGAAATA CCTTTGTGGG GGTAGAGAGG CTGTTTCCGA 15653 .......... .......... .......... .......... .......... .......... 492 TGAAAGGAAA CACCTTTATG GTGTAGAGAT GCTTTTAAGA TGATTACATT AATTCATAGA 15713 .......... .......... .......... .......... .......... .......... 492 AGGAAATATT GTTTGTTTTT AGTAAAACAC TAACTATCTT GGATTTGTTT GTAGCTAATT 15773 .......... .......... .......... .......... .......... .......... 492 CGTGATTTCA GTTACTTGTT GTGTTTCTTG TCTTGTTTAA ACAAAGACAT TTCAGCTGGC 15833 .......... .......... .......... .......... .......... .......... 492 AGAAGTGGAT TTAGGATGTG AATTTTATGG CTAGAGTATG AAAGTACATC ACAACCCATT 15893 .......... .......... .......... .......... .......... .......... 492 ATAGGGTATG AAATCTATTA CACGAACTTA TTTGGTGGCT TTTTAAAACA CGTATGCGGT 15953 .......... .......... .......... .......... .......... .......... 492 CTGAGCTAAA CTTGCTGGAT TCGGACAAAC CATAACTCCT ATGATACATT CGCTTGCCTG 16013 .......... .......... .......... .......... .......... .......... 492 ATGAGAGTTT CTAATATTTC TCTTCGCCCC TTCATTCATC TGATATTGTT ATATAAGGTT 16073 .......... .......... .......... .......... .......... .......... 492 TTAAATTGGG ACGCTTAGGA GGCCAAGCAT AGTTTGAGAG TGCTGTATTG CCTGCTTTAA 16133 .......... .......... .......... .......... .......... .......... 492 TTGCTAATCA ATTCTGCTAA TGTTTAGAAC TCTTGCCTCA AGCATGCTTT TTGACATCTA 16193 .......... .......... .......... .......... .......... .......... 492 AAATTTGCTT TCTAACTCCT AATTGAGCTT ATTTGGATCC TTTTAGTATT AATTCTAGAA 16253 .......... .......... .......... .......... .......... .......... 492 TCGTTTCCTT TGTAATGTTG CAATGATGCT GTTGCTAGAT CAGTAATATT TCTTTTAACC 16313 .......... .......... .......... .......... .......... .......... 492 TCTTAATGCT AATAATGCTT GTTCGATCAT GTCAAGTTGC ATATACTGGC TGTAACGTCT 16373 .......... .......... .......... .......... .......... .......... 492 TGGAAATTTT CTTCGATTAA TGAATCCTCA TTATTGTTAT GCTGTTTGGA CTTCTGCTGA 16433 .......... .......... .......... .......... .......... .......... 492 TATAATGAAC CCACACTTGC ATGGGGGTCC AGGCAAGATA TGCCAGAGGT ATTAGGTAAT 16493 .......... .......... .......... .......... .......... .......... 492 AGATGTAGTC AAAAGCTTAT GGCAATAAAC ATGATATTAT CACAAGAATG GGCTGTAAGC 16553 .......... .......... .......... .......... .......... .......... 492 TGTAGATTGC TGTAAGTTCT TCAATGAAAG TGAGGCATCA ATATATACAT AAAAAAAGAA 16613 .......... .......... .......... .......... .......... .......... 492 CTATTTGAAT AATACATTCA AATGGGATTT GCATTTGGGC AATGACTAGT TCTTCCAAAC 16673 .......... .......... .......... .......... .......... .......... 492 ATCAGACAAA CGAAATAGTT GAGAATTTAC TTGTTTGCTA CTAAATTATG AAACACTTCC 16733 .......... .......... .......... .......... .......... .......... 492 TCTCTTTCCC TGCACCTGCA AATCAAACCT TCTTCCATTT TTAGAGATGT GAACGAGTTT 16793 .......... .......... .......... .......... .......... .......... 492 ACAGTTGGAT GGAACGAACA TTTATTAACC CCTTGGTAAA ATTTTACAAA ATTAAGCACA 16853 .......... .......... .......... .......... .......... .......... 492 AATAGGAGAG TGCTTTTGTC GGAAACTTTA CAGCAATATC TAAGGGAGAA TTCCCTTCCG 16913 .......... .......... .......... .......... .......... .......... 492 CCATCTTAAG AGTGTTTGTG TACATGGAGG GAATTGAATA GCCTTTCTTT TTCTGGCATT 16973 .......... .......... .......... .......... .......... .......... 492 TTGGAGATAA GTAGATCCGT TGGGATAGCG GTTGTGATGC AATAGTTGTT GCTATATTGG 17033 .......... .......... .......... .......... .......... .......... 492 TTCCATTGAG TATCAAGTCT TCTGGAGTTA AATGGGTGAA TGTGCTATTG CTGACGTCCT 17093 .......... .......... .......... .......... .......... .......... 492 ACTTGCTGCT ATGCCACGCA CCGATATCAC TCATACTGGA AAGATAAAAT AAAATGAAAT 17153 .......... .......... .......... .......... .......... .......... 492 AGAAACCAAA AGGCAAAAAA TGGAAGACAG ATTGATATAT ATGAACTGCT ATATATTCAT 17213 .......... .......... .......... .......... .......... .......... 492 TCTTTCTTGT TCTTGTGCAG ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 17273 |||||||||| |||||||||| ||||||||| |||||||| .......... .......... ACTACAAAAT TTGGGAGCTC TAGAATGGGG ATAAGTAGTG 532 CACGGACATC AGGGCTGGAG GCTTTTCACT TGTATCTGGT TACATGCTGG TGTTGTTCAT 17333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGGACATC AGGGCTGGAG GCTTTTCACT TGTATCTGGT TACATGCTGG TGTTGTTCAT 592 CTGCTTGCAA ACATGTTG 17351 |||||||||| |||||||| CTGCTTGCAA ACATGTTG 610 hqPGS_C08HBa0197J17.1+_SGN-E261982+ (14634 15126,17234 17351) ******************************************************************************** EST sequence 24 +strand 581 n (File: SGN-E255513+) 1 TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTTTTTTTTA ATTCTTCCCC AATTGTTGAA 61 AATGCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 121 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 181 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 241 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 301 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 361 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 421 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 481 CCTCTTCATC CACACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA ATGCACGGAC 541 ATCAGGGCTG GAGGCTTTTC ACTTGGATCT GGTTACATGC T Predicted gene structure (within gDNA segment 14034 to 18075): Exon 1 14634 15126 ( 493 n); cDNA 1 493 ( 493 n); score: 0.990 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 17234 17321 ( 88 n); cDNA 494 581 ( 88 n); score: 0.977 MATCH C08HBa0197J17.1+ SGN-E255513+ 0.988 581 1.000 C PGS_C08HBa0197J17.1+_SGN-E255513+ (14634 15126,17234 17321) Alignment (genomic DNA sequence = upper lines): TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 14693 |||||||||| |||||||||| |||||||||| || ||||| |||||||||| |||| ||||| TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTTTTTTTTA ATTCTTCCCC AATTGTTGAA 60 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 14753 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 120 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 14813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 180 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 14873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 240 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 14933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 300 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 14993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 360 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 15053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 420 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 15113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 480 CCTCTTCATC CACGTAAAGT TTAAAACTTT TTGATCTAGT TTTTGTAATG ATTGTTCTTT 15173 |||||||||| ||| CCTCTTCATC CAC....... .......... .......... .......... .......... 493 GTTTATGATT TTTCATGTTT ATTAGCCTGT TTGATTTGAT TGTGTTAATT GTTGCGTTGT 15233 .......... .......... .......... .......... .......... .......... 493 ATAGCTTATG GAGGATGAAG GTTCTTGTTT ATTTGATGCA GATTTAGTGT GGTCATATGG 15293 .......... .......... .......... .......... .......... .......... 493 ATTCTTGATT TCTATGGTTT TGTAAATCAA GAAAAGGAAA AAGATTGAAT TTTTAACATA 15353 .......... .......... .......... .......... .......... .......... 493 GTGTAATTTC ACAAGTGGGG TGTGGGATGG TTAGATCATA GGTGTATGTA GACCTTATCA 15413 .......... .......... .......... .......... .......... .......... 493 CTACCTTTGT GGGATAGAGA GGTTGTTTAT GACAAAAAGG GAATTCCTTC GTGGGGGTAG 15473 .......... .......... .......... .......... .......... .......... 493 AGAGGTTATA TCCGATAAAA GAAAATACCT TTGCAGGGTG GAGAGGTTGT TTCCGATAAA 15533 .......... .......... .......... .......... .......... .......... 493 TGGAAATACC TTTGTTGGAT AGAGAGGCTG TTTTCGATGA AAGGAAATAC ATTTGTGGGA 15593 .......... .......... .......... .......... .......... .......... 493 TAGAGAGGTT GTTTCTGCTA AAAGGAAATA CCTTTGTGGG GGTAGAGAGG CTGTTTCCGA 15653 .......... .......... .......... .......... .......... .......... 493 TGAAAGGAAA CACCTTTATG GTGTAGAGAT GCTTTTAAGA TGATTACATT AATTCATAGA 15713 .......... .......... .......... .......... .......... .......... 493 AGGAAATATT GTTTGTTTTT AGTAAAACAC TAACTATCTT GGATTTGTTT GTAGCTAATT 15773 .......... .......... .......... .......... .......... .......... 493 CGTGATTTCA GTTACTTGTT GTGTTTCTTG TCTTGTTTAA ACAAAGACAT TTCAGCTGGC 15833 .......... .......... .......... .......... .......... .......... 493 AGAAGTGGAT TTAGGATGTG AATTTTATGG CTAGAGTATG AAAGTACATC ACAACCCATT 15893 .......... .......... .......... .......... .......... .......... 493 ATAGGGTATG AAATCTATTA CACGAACTTA TTTGGTGGCT TTTTAAAACA CGTATGCGGT 15953 .......... .......... .......... .......... .......... .......... 493 CTGAGCTAAA CTTGCTGGAT TCGGACAAAC CATAACTCCT ATGATACATT CGCTTGCCTG 16013 .......... .......... .......... .......... .......... .......... 493 ATGAGAGTTT CTAATATTTC TCTTCGCCCC TTCATTCATC TGATATTGTT ATATAAGGTT 16073 .......... .......... .......... .......... .......... .......... 493 TTAAATTGGG ACGCTTAGGA GGCCAAGCAT AGTTTGAGAG TGCTGTATTG CCTGCTTTAA 16133 .......... .......... .......... .......... .......... .......... 493 TTGCTAATCA ATTCTGCTAA TGTTTAGAAC TCTTGCCTCA AGCATGCTTT TTGACATCTA 16193 .......... .......... .......... .......... .......... .......... 493 AAATTTGCTT TCTAACTCCT AATTGAGCTT ATTTGGATCC TTTTAGTATT AATTCTAGAA 16253 .......... .......... .......... .......... .......... .......... 493 TCGTTTCCTT TGTAATGTTG CAATGATGCT GTTGCTAGAT CAGTAATATT TCTTTTAACC 16313 .......... .......... .......... .......... .......... .......... 493 TCTTAATGCT AATAATGCTT GTTCGATCAT GTCAAGTTGC ATATACTGGC TGTAACGTCT 16373 .......... .......... .......... .......... .......... .......... 493 TGGAAATTTT CTTCGATTAA TGAATCCTCA TTATTGTTAT GCTGTTTGGA CTTCTGCTGA 16433 .......... .......... .......... .......... .......... .......... 493 TATAATGAAC CCACACTTGC ATGGGGGTCC AGGCAAGATA TGCCAGAGGT ATTAGGTAAT 16493 .......... .......... .......... .......... .......... .......... 493 AGATGTAGTC AAAAGCTTAT GGCAATAAAC ATGATATTAT CACAAGAATG GGCTGTAAGC 16553 .......... .......... .......... .......... .......... .......... 493 TGTAGATTGC TGTAAGTTCT TCAATGAAAG TGAGGCATCA ATATATACAT AAAAAAAGAA 16613 .......... .......... .......... .......... .......... .......... 493 CTATTTGAAT AATACATTCA AATGGGATTT GCATTTGGGC AATGACTAGT TCTTCCAAAC 16673 .......... .......... .......... .......... .......... .......... 493 ATCAGACAAA CGAAATAGTT GAGAATTTAC TTGTTTGCTA CTAAATTATG AAACACTTCC 16733 .......... .......... .......... .......... .......... .......... 493 TCTCTTTCCC TGCACCTGCA AATCAAACCT TCTTCCATTT TTAGAGATGT GAACGAGTTT 16793 .......... .......... .......... .......... .......... .......... 493 ACAGTTGGAT GGAACGAACA TTTATTAACC CCTTGGTAAA ATTTTACAAA ATTAAGCACA 16853 .......... .......... .......... .......... .......... .......... 493 AATAGGAGAG TGCTTTTGTC GGAAACTTTA CAGCAATATC TAAGGGAGAA TTCCCTTCCG 16913 .......... .......... .......... .......... .......... .......... 493 CCATCTTAAG AGTGTTTGTG TACATGGAGG GAATTGAATA GCCTTTCTTT TTCTGGCATT 16973 .......... .......... .......... .......... .......... .......... 493 TTGGAGATAA GTAGATCCGT TGGGATAGCG GTTGTGATGC AATAGTTGTT GCTATATTGG 17033 .......... .......... .......... .......... .......... .......... 493 TTCCATTGAG TATCAAGTCT TCTGGAGTTA AATGGGTGAA TGTGCTATTG CTGACGTCCT 17093 .......... .......... .......... .......... .......... .......... 493 ACTTGCTGCT ATGCCACGCA CCGATATCAC TCATACTGGA AAGATAAAAT AAAATGAAAT 17153 .......... .......... .......... .......... .......... .......... 493 AGAAACCAAA AGGCAAAAAA TGGAAGACAG ATTGATATAT ATGAACTGCT ATATATTCAT 17213 .......... .......... .......... .......... .......... .......... 493 TCTTTCTTGT TCTTGTGCAG ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 17273 |||||||||| |||||||||| |||||||||| ||||||| || .......... .......... ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAATG 533 CACGGACATC AGGGCTGGAG GCTTTTCACT TGTATCTGGT TACATGCT 17321 |||||||||| |||||||||| |||||||||| || ||||||| |||||||| CACGGACATC AGGGCTGGAG GCTTTTCACT TGGATCTGGT TACATGCT 581 hqPGS_C08HBa0197J17.1+_SGN-E255513+ (14634 15126,17234 17321) ******************************************************************************** EST sequence 25 +strand 543 n (File: SGN-E255383+) 1 TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 61 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 121 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 181 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 241 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 301 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 361 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 421 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 481 CCTCTTCATC CACACTACAA AATTTGGGAG CTCTAGAATG GGATAAAGTA GTGCACGGAC 541 ATC Predicted gene structure (within gDNA segment 14034 to 17893): Exon 1 14634 15126 ( 493 n); cDNA 1 493 ( 493 n); score: 1.000 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17283 ( 50 n); cDNA 494 543 ( 50 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E255383+ 1.000 543 1.000 C PGS_C08HBa0197J17.1+_SGN-E255383+ (14634 15126,17234 17283) Alignment (genomic DNA sequence = upper lines): TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 14693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCACAAC CCCTAAAAAT CCTCTCTTTT TTCAGTTTTA ATTCTTCCCC AATTCTTGAA 60 AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 14753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCATTTC TAAAGCTTTC TTCATCTCTG CTTCAAAGCT ACTTCACCCC ACCCACCCCC 120 ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 14813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATAAA TAAACTTTGA AGAAATTGCT GAGTTTGTTC AGTTTTTCTG AAATCAAGAA 180 TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 14873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGGTAA TAGAGATCTG GAGAGGGGAG GTGGAACAAA GCCAAGAAAT GGGAGTTACC 240 AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 14933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACCCCC AACAACAGCA GCACCTTACT ATATGGAAAC TTCTGAATCA CAGTGGACTT 300 CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 14993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTAGT CCCTATGATT GTTGTAGCCA ATGTAGCTAT GTTTATTGTC ATCATGTTTG 360 TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 15053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACAATTG CCCAAGTAAT ATCAATAATT TTGGCAGAGG TGGAGGACGC CGCCAGTGTG 420 TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 15113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCAGGTT TCTTGGGAGG CTTTCTTTTC AACCTCTTCA AGATAATCCA CTTTTTGGAC 480 CCTCTTCATC CACGTAAAGT TTAAAACTTT TTGATCTAGT TTTTGTAATG ATTGTTCTTT 15173 |||||||||| ||| CCTCTTCATC CAC....... .......... .......... .......... .......... 493 GTTTATGATT TTTCATGTTT ATTAGCCTGT TTGATTTGAT TGTGTTAATT GTTGCGTTGT 15233 .......... .......... .......... .......... .......... .......... 493 ATAGCTTATG GAGGATGAAG GTTCTTGTTT ATTTGATGCA GATTTAGTGT GGTCATATGG 15293 .......... .......... .......... .......... .......... .......... 493 ATTCTTGATT TCTATGGTTT TGTAAATCAA GAAAAGGAAA AAGATTGAAT TTTTAACATA 15353 .......... .......... .......... .......... .......... .......... 493 GTGTAATTTC ACAAGTGGGG TGTGGGATGG TTAGATCATA GGTGTATGTA GACCTTATCA 15413 .......... .......... .......... .......... .......... .......... 493 CTACCTTTGT GGGATAGAGA GGTTGTTTAT GACAAAAAGG GAATTCCTTC GTGGGGGTAG 15473 .......... .......... .......... .......... .......... .......... 493 AGAGGTTATA TCCGATAAAA GAAAATACCT TTGCAGGGTG GAGAGGTTGT TTCCGATAAA 15533 .......... .......... .......... .......... .......... .......... 493 TGGAAATACC TTTGTTGGAT AGAGAGGCTG TTTTCGATGA AAGGAAATAC ATTTGTGGGA 15593 .......... .......... .......... .......... .......... .......... 493 TAGAGAGGTT GTTTCTGCTA AAAGGAAATA CCTTTGTGGG GGTAGAGAGG CTGTTTCCGA 15653 .......... .......... .......... .......... .......... .......... 493 TGAAAGGAAA CACCTTTATG GTGTAGAGAT GCTTTTAAGA TGATTACATT AATTCATAGA 15713 .......... .......... .......... .......... .......... .......... 493 AGGAAATATT GTTTGTTTTT AGTAAAACAC TAACTATCTT GGATTTGTTT GTAGCTAATT 15773 .......... .......... .......... .......... .......... .......... 493 CGTGATTTCA GTTACTTGTT GTGTTTCTTG TCTTGTTTAA ACAAAGACAT TTCAGCTGGC 15833 .......... .......... .......... .......... .......... .......... 493 AGAAGTGGAT TTAGGATGTG AATTTTATGG CTAGAGTATG AAAGTACATC ACAACCCATT 15893 .......... .......... .......... .......... .......... .......... 493 ATAGGGTATG AAATCTATTA CACGAACTTA TTTGGTGGCT TTTTAAAACA CGTATGCGGT 15953 .......... .......... .......... .......... .......... .......... 493 CTGAGCTAAA CTTGCTGGAT TCGGACAAAC CATAACTCCT ATGATACATT CGCTTGCCTG 16013 .......... .......... .......... .......... .......... .......... 493 ATGAGAGTTT CTAATATTTC TCTTCGCCCC TTCATTCATC TGATATTGTT ATATAAGGTT 16073 .......... .......... .......... .......... .......... .......... 493 TTAAATTGGG ACGCTTAGGA GGCCAAGCAT AGTTTGAGAG TGCTGTATTG CCTGCTTTAA 16133 .......... .......... .......... .......... .......... .......... 493 TTGCTAATCA ATTCTGCTAA TGTTTAGAAC TCTTGCCTCA AGCATGCTTT TTGACATCTA 16193 .......... .......... .......... .......... .......... .......... 493 AAATTTGCTT TCTAACTCCT AATTGAGCTT ATTTGGATCC TTTTAGTATT AATTCTAGAA 16253 .......... .......... .......... .......... .......... .......... 493 TCGTTTCCTT TGTAATGTTG CAATGATGCT GTTGCTAGAT CAGTAATATT TCTTTTAACC 16313 .......... .......... .......... .......... .......... .......... 493 TCTTAATGCT AATAATGCTT GTTCGATCAT GTCAAGTTGC ATATACTGGC TGTAACGTCT 16373 .......... .......... .......... .......... .......... .......... 493 TGGAAATTTT CTTCGATTAA TGAATCCTCA TTATTGTTAT GCTGTTTGGA CTTCTGCTGA 16433 .......... .......... .......... .......... .......... .......... 493 TATAATGAAC CCACACTTGC ATGGGGGTCC AGGCAAGATA TGCCAGAGGT ATTAGGTAAT 16493 .......... .......... .......... .......... .......... .......... 493 AGATGTAGTC AAAAGCTTAT GGCAATAAAC ATGATATTAT CACAAGAATG GGCTGTAAGC 16553 .......... .......... .......... .......... .......... .......... 493 TGTAGATTGC TGTAAGTTCT TCAATGAAAG TGAGGCATCA ATATATACAT AAAAAAAGAA 16613 .......... .......... .......... .......... .......... .......... 493 CTATTTGAAT AATACATTCA AATGGGATTT GCATTTGGGC AATGACTAGT TCTTCCAAAC 16673 .......... .......... .......... .......... .......... .......... 493 ATCAGACAAA CGAAATAGTT GAGAATTTAC TTGTTTGCTA CTAAATTATG AAACACTTCC 16733 .......... .......... .......... .......... .......... .......... 493 TCTCTTTCCC TGCACCTGCA AATCAAACCT TCTTCCATTT TTAGAGATGT GAACGAGTTT 16793 .......... .......... .......... .......... .......... .......... 493 ACAGTTGGAT GGAACGAACA TTTATTAACC CCTTGGTAAA ATTTTACAAA ATTAAGCACA 16853 .......... .......... .......... .......... .......... .......... 493 AATAGGAGAG TGCTTTTGTC GGAAACTTTA CAGCAATATC TAAGGGAGAA TTCCCTTCCG 16913 .......... .......... .......... .......... .......... .......... 493 CCATCTTAAG AGTGTTTGTG TACATGGAGG GAATTGAATA GCCTTTCTTT TTCTGGCATT 16973 .......... .......... .......... .......... .......... .......... 493 TTGGAGATAA GTAGATCCGT TGGGATAGCG GTTGTGATGC AATAGTTGTT GCTATATTGG 17033 .......... .......... .......... .......... .......... .......... 493 TTCCATTGAG TATCAAGTCT TCTGGAGTTA AATGGGTGAA TGTGCTATTG CTGACGTCCT 17093 .......... .......... .......... .......... .......... .......... 493 ACTTGCTGCT ATGCCACGCA CCGATATCAC TCATACTGGA AAGATAAAAT AAAATGAAAT 17153 .......... .......... .......... .......... .......... .......... 493 AGAAACCAAA AGGCAAAAAA TGGAAGACAG ATTGATATAT ATGAACTGCT ATATATTCAT 17213 .......... .......... .......... .......... .......... .......... 493 TCTTTCTTGT TCTTGTGCAG ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 17273 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... ACTACAAAAT TTGGGAGCTC TAGAATGGGA TAAAGTAGTG 533 CACGGACATC 17283 |||||||||| CACGGACATC 543 hqPGS_C08HBa0197J17.1+_SGN-E255383+ (14634 15126,17234 17283) ******************************************************************************** EST sequence 66 +strand 599 n (File: SGN-E368816+) 1 AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA GGTTTCTTGG GAGGCTTTCT 61 TTTCAACCTC TTCAAGATAA TCCACTTTTT GGACCCTCTT CATCCACACT ACAAAATTTG 121 GGAGCTCTAG AATGGGATAA AGTAGTGCAC GGACATCAGG GCTGGAGGCT TTTCACTTGT 181 ATCTGGTTAC ATGCTGGTGT TGTTCATCTG CTTGCAAACA TGTTGAGTTT GGTATTCATT 241 GGTATTCGCC TCGAGCAGCA GTTTGGATTT GTCCGGGTGG GGATTATCTA CGTTTTGTCA 301 GGAATTGGTG GCAGTGTTCT TTCTTGCCTT TTCATTCAAG GTAGCATCTC TGTTGGAGCT 361 TCTGGTGCTC TATTTGGACT TCTGGGAGCA ATGTTATCGG AGCTTCTTAC TAACTGGAGT 421 ATATATACCA ATAAGGCTGC AGCTCTTATC ACTCTCATTA TCATCATCGC GATTAACTTA 481 GCTGTTGGTC TTCTTCCTCA TGTCGATAAC TATGCCCATA TTGGAGGTTT CATGGGTGGT 541 TTTCTTCTTG GCTTTGTTCT GCTACTACGA CCTCAGTTTG GTTGGCTCGA AAGGCAACA Predicted gene structure (within gDNA segment 14420 to 18785): Exon 1 15020 15126 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17397 ( 164 n); cDNA 108 271 ( 164 n); score: 1.000 Intron 2 17398 17723 ( 326 n); Pd: 0.964 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 17724 17887 ( 164 n); cDNA 272 435 ( 164 n); score: 1.000 Intron 3 17888 18011 ( 124 n); Pd: 0.987 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 18012 18175 ( 164 n); cDNA 436 599 ( 164 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E368816+ 1.000 599 1.000 C PGS_C08HBa0197J17.1+_SGN-E368816+ (15020 15126,17234 17397,17724 17887,18012 18175) Alignment (genomic DNA sequence = upper lines): AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA GGTTTCTTGG GAGGCTTTCT 15079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA GGTTTCTTGG GAGGCTTTCT 60 TTTCAACCTC TTCAAGATAA TCCACTTTTT GGACCCTCTT CATCCACGTA AAGTTTAAAA 15139 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTTCAACCTC TTCAAGATAA TCCACTTTTT GGACCCTCTT CATCCAC... .......... 107 CTTTTTGATC TAGTTTTTGT AATGATTGTT CTTTGTTTAT GATTTTTCAT GTTTATTAGC 15199 .......... .......... .......... .......... .......... .......... 107 CTGTTTGATT TGATTGTGTT AATTGTTGCG TTGTATAGCT TATGGAGGAT GAAGGTTCTT 15259 .......... .......... .......... .......... .......... .......... 107 GTTTATTTGA TGCAGATTTA GTGTGGTCAT ATGGATTCTT GATTTCTATG GTTTTGTAAA 15319 .......... .......... .......... .......... .......... .......... 107 TCAAGAAAAG GAAAAAGATT GAATTTTTAA CATAGTGTAA TTTCACAAGT GGGGTGTGGG 15379 .......... .......... .......... .......... .......... .......... 107 ATGGTTAGAT CATAGGTGTA TGTAGACCTT ATCACTACCT TTGTGGGATA GAGAGGTTGT 15439 .......... .......... .......... .......... .......... .......... 107 TTATGACAAA AAGGGAATTC CTTCGTGGGG GTAGAGAGGT TATATCCGAT AAAAGAAAAT 15499 .......... .......... .......... .......... .......... .......... 107 ACCTTTGCAG GGTGGAGAGG TTGTTTCCGA TAAATGGAAA TACCTTTGTT GGATAGAGAG 15559 .......... .......... .......... .......... .......... .......... 107 GCTGTTTTCG ATGAAAGGAA ATACATTTGT GGGATAGAGA GGTTGTTTCT GCTAAAAGGA 15619 .......... .......... .......... .......... .......... .......... 107 AATACCTTTG TGGGGGTAGA GAGGCTGTTT CCGATGAAAG GAAACACCTT TATGGTGTAG 15679 .......... .......... .......... .......... .......... .......... 107 AGATGCTTTT AAGATGATTA CATTAATTCA TAGAAGGAAA TATTGTTTGT TTTTAGTAAA 15739 .......... .......... .......... .......... .......... .......... 107 ACACTAACTA TCTTGGATTT GTTTGTAGCT AATTCGTGAT TTCAGTTACT TGTTGTGTTT 15799 .......... .......... .......... .......... .......... .......... 107 CTTGTCTTGT TTAAACAAAG ACATTTCAGC TGGCAGAAGT GGATTTAGGA TGTGAATTTT 15859 .......... .......... .......... .......... .......... .......... 107 ATGGCTAGAG TATGAAAGTA CATCACAACC CATTATAGGG TATGAAATCT ATTACACGAA 15919 .......... .......... .......... .......... .......... .......... 107 CTTATTTGGT GGCTTTTTAA AACACGTATG CGGTCTGAGC TAAACTTGCT GGATTCGGAC 15979 .......... .......... .......... .......... .......... .......... 107 AAACCATAAC TCCTATGATA CATTCGCTTG CCTGATGAGA GTTTCTAATA TTTCTCTTCG 16039 .......... .......... .......... .......... .......... .......... 107 CCCCTTCATT CATCTGATAT TGTTATATAA GGTTTTAAAT TGGGACGCTT AGGAGGCCAA 16099 .......... .......... .......... .......... .......... .......... 107 GCATAGTTTG AGAGTGCTGT ATTGCCTGCT TTAATTGCTA ATCAATTCTG CTAATGTTTA 16159 .......... .......... .......... .......... .......... .......... 107 GAACTCTTGC CTCAAGCATG CTTTTTGACA TCTAAAATTT GCTTTCTAAC TCCTAATTGA 16219 .......... .......... .......... .......... .......... .......... 107 GCTTATTTGG ATCCTTTTAG TATTAATTCT AGAATCGTTT CCTTTGTAAT GTTGCAATGA 16279 .......... .......... .......... .......... .......... .......... 107 TGCTGTTGCT AGATCAGTAA TATTTCTTTT AACCTCTTAA TGCTAATAAT GCTTGTTCGA 16339 .......... .......... .......... .......... .......... .......... 107 TCATGTCAAG TTGCATATAC TGGCTGTAAC GTCTTGGAAA TTTTCTTCGA TTAATGAATC 16399 .......... .......... .......... .......... .......... .......... 107 CTCATTATTG TTATGCTGTT TGGACTTCTG CTGATATAAT GAACCCACAC TTGCATGGGG 16459 .......... .......... .......... .......... .......... .......... 107 GTCCAGGCAA GATATGCCAG AGGTATTAGG TAATAGATGT AGTCAAAAGC TTATGGCAAT 16519 .......... .......... .......... .......... .......... .......... 107 AAACATGATA TTATCACAAG AATGGGCTGT AAGCTGTAGA TTGCTGTAAG TTCTTCAATG 16579 .......... .......... .......... .......... .......... .......... 107 AAAGTGAGGC ATCAATATAT ACATAAAAAA AGAACTATTT GAATAATACA TTCAAATGGG 16639 .......... .......... .......... .......... .......... .......... 107 ATTTGCATTT GGGCAATGAC TAGTTCTTCC AAACATCAGA CAAACGAAAT AGTTGAGAAT 16699 .......... .......... .......... .......... .......... .......... 107 TTACTTGTTT GCTACTAAAT TATGAAACAC TTCCTCTCTT TCCCTGCACC TGCAAATCAA 16759 .......... .......... .......... .......... .......... .......... 107 ACCTTCTTCC ATTTTTAGAG ATGTGAACGA GTTTACAGTT GGATGGAACG AACATTTATT 16819 .......... .......... .......... .......... .......... .......... 107 AACCCCTTGG TAAAATTTTA CAAAATTAAG CACAAATAGG AGAGTGCTTT TGTCGGAAAC 16879 .......... .......... .......... .......... .......... .......... 107 TTTACAGCAA TATCTAAGGG AGAATTCCCT TCCGCCATCT TAAGAGTGTT TGTGTACATG 16939 .......... .......... .......... .......... .......... .......... 107 GAGGGAATTG AATAGCCTTT CTTTTTCTGG CATTTTGGAG ATAAGTAGAT CCGTTGGGAT 16999 .......... .......... .......... .......... .......... .......... 107 AGCGGTTGTG ATGCAATAGT TGTTGCTATA TTGGTTCCAT TGAGTATCAA GTCTTCTGGA 17059 .......... .......... .......... .......... .......... .......... 107 GTTAAATGGG TGAATGTGCT ATTGCTGACG TCCTACTTGC TGCTATGCCA CGCACCGATA 17119 .......... .......... .......... .......... .......... .......... 107 TCACTCATAC TGGAAAGATA AAATAAAATG AAATAGAAAC CAAAAGGCAA AAAATGGAAG 17179 .......... .......... .......... .......... .......... .......... 107 ACAGATTGAT ATATATGAAC TGCTATATAT TCATTCTTTC TTGTTCTTGT GCAGACTACA 17239 |||||| .......... .......... .......... .......... .......... ....ACTACA 113 AAATTTGGGA GCTCTAGAAT GGGATAAAGT AGTGCACGGA CATCAGGGCT GGAGGCTTTT 17299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTTGGGA GCTCTAGAAT GGGATAAAGT AGTGCACGGA CATCAGGGCT GGAGGCTTTT 173 CACTTGTATC TGGTTACATG CTGGTGTTGT TCATCTGCTT GCAAACATGT TGAGTTTGGT 17359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTGTATC TGGTTACATG CTGGTGTTGT TCATCTGCTT GCAAACATGT TGAGTTTGGT 233 ATTCATTGGT ATTCGCCTCG AGCAGCAGTT TGGATTTGGT ACAATTCTCC TCCCTGTGCC 17419 |||||||||| |||||||||| |||||||||| |||||||| ATTCATTGGT ATTCGCCTCG AGCAGCAGTT TGGATTTG.. .......... .......... 271 CTCAAATATT TCTTCATGTT CTTTTGGATA ACACTAGTAC ACAACAAATG TCTTTTTATG 17479 .......... .......... .......... .......... .......... .......... 271 CATAAGCAAT TCATTCTACT TTCCTCTAAA TTGTGCCCGT GTCTAGCTTC CTCGGCTCCG 17539 .......... .......... .......... .......... .......... .......... 271 TTTGTCATTA CAGTTCATCT GCTGAAATAG AAGTACTGTT TTTACTTGCA ATCTCTTTAA 17599 .......... .......... .......... .......... .......... .......... 271 CATCAACAAT TTCAGTCACT TCTTTCTGAA ATATAACCCC ACCTTCAATT TTCTTAACCT 17659 .......... .......... .......... .......... .......... .......... 271 TGAGCTGACT AGTGTCTTAA TTCACTTTTT GTTCTTATAT TTATATCTCT AATGTTATGT 17719 .......... .......... .......... .......... .......... .......... 271 GCAGTCCGGG TGGGGATTAT CTACGTTTTG TCAGGAATTG GTGGCAGTGT TCTTTCTTGC 17779 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCCGGG TGGGGATTAT CTACGTTTTG TCAGGAATTG GTGGCAGTGT TCTTTCTTGC 327 CTTTTCATTC AAGGTAGCAT CTCTGTTGGA GCTTCTGGTG CTCTATTTGG ACTTCTGGGA 17839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTCATTC AAGGTAGCAT CTCTGTTGGA GCTTCTGGTG CTCTATTTGG ACTTCTGGGA 387 GCAATGTTAT CGGAGCTTCT TACTAACTGG AGTATATATA CCAATAAGGT ATAAACCCTG 17899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GCAATGTTAT CGGAGCTTCT TACTAACTGG AGTATATATA CCAATAAG.. .......... 435 CTATTCTACT GTTATTATTT GTGTTCTTTC CCCTGTTGAG GAGGTTATTC GTTTTATTTT 17959 .......... .......... .......... .......... .......... .......... 435 ATAACACGTT CTAAGTACTT AATTCCGGTA CTAATTAATC TCATTTATAC AGGCTGCAGC 18019 |||||||| .......... .......... .......... .......... .......... ..GCTGCAGC 443 TCTTATCACT CTCATTATCA TCATCGCGAT TAACTTAGCT GTTGGTCTTC TTCCTCATGT 18079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTATCACT CTCATTATCA TCATCGCGAT TAACTTAGCT GTTGGTCTTC TTCCTCATGT 503 CGATAACTAT GCCCATATTG GAGGTTTCAT GGGTGGTTTT CTTCTTGGCT TTGTTCTGCT 18139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATAACTAT GCCCATATTG GAGGTTTCAT GGGTGGTTTT CTTCTTGGCT TTGTTCTGCT 563 ACTACGACCT CAGTTTGGTT GGCTCGAAAG GCAACA 18175 |||||||||| |||||||||| |||||||||| |||||| ACTACGACCT CAGTTTGGTT GGCTCGAAAG GCAACA 599 hqPGS_C08HBa0197J17.1+_SGN-E368816+ (15020 15126,17234 17397,17724 17887,18012 18175) ******************************************************************************** EST sequence 48 +strand 398 n (File: SGN-E259523+) 1 AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA GGTTTCTTGG GAGGCTTTCT 61 TTTCAACCTC TTCAAGATAA TCCACTTTTT GGACCCTCTT CATCCACACT ACAAAATTTG 121 GGAGCTCTAG AATGGGATAA AGTAGTGCAC GGACATCAGG GCTGGAGGCT TTTCACTTGT 181 ATCTGGTTAC ATGCTGGTGT TGTTCATCTG CTTGCAAACA TGTTGAGTTT GGTATTCATT 241 GGTATTCGCC TCGAGCAGCA GTTTGGATTT GTCCGGGTGG GGATTATCTA CGTTTTGTCA 301 GGAATTGGTG GCAGTGTTCT TTCTTGCCTT TTCATTCAAA GTAGCATCTC TGTTGGAGCT 361 TCTGGTGCTC TATTTGGACT TCTGGGAGCA ATGTTATC Predicted gene structure (within gDNA segment 14420 to 18460): Exon 1 15020 15126 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 15127 17233 (2107 n); Pd: 0.994 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 17234 17397 ( 164 n); cDNA 108 271 ( 164 n); score: 1.000 Intron 2 17398 17723 ( 326 n); Pd: 0.964 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 17724 17850 ( 127 n); cDNA 272 398 ( 127 n); score: 0.992 MATCH C08HBa0197J17.1+ SGN-E259523+ 0.997 398 1.000 C PGS_C08HBa0197J17.1+_SGN-E259523+ (15020 15126,17234 17397,17724 17850) Alignment (genomic DNA sequence = upper lines): AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA GGTTTCTTGG GAGGCTTTCT 15079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA GGTTTCTTGG GAGGCTTTCT 60 TTTCAACCTC TTCAAGATAA TCCACTTTTT GGACCCTCTT CATCCACGTA AAGTTTAAAA 15139 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTTCAACCTC TTCAAGATAA TCCACTTTTT GGACCCTCTT CATCCAC... .......... 107 CTTTTTGATC TAGTTTTTGT AATGATTGTT CTTTGTTTAT GATTTTTCAT GTTTATTAGC 15199 .......... .......... .......... .......... .......... .......... 107 CTGTTTGATT TGATTGTGTT AATTGTTGCG TTGTATAGCT TATGGAGGAT GAAGGTTCTT 15259 .......... .......... .......... .......... .......... .......... 107 GTTTATTTGA TGCAGATTTA GTGTGGTCAT ATGGATTCTT GATTTCTATG GTTTTGTAAA 15319 .......... .......... .......... .......... .......... .......... 107 TCAAGAAAAG GAAAAAGATT GAATTTTTAA CATAGTGTAA TTTCACAAGT GGGGTGTGGG 15379 .......... .......... .......... .......... .......... .......... 107 ATGGTTAGAT CATAGGTGTA TGTAGACCTT ATCACTACCT TTGTGGGATA GAGAGGTTGT 15439 .......... .......... .......... .......... .......... .......... 107 TTATGACAAA AAGGGAATTC CTTCGTGGGG GTAGAGAGGT TATATCCGAT AAAAGAAAAT 15499 .......... .......... .......... .......... .......... .......... 107 ACCTTTGCAG GGTGGAGAGG TTGTTTCCGA TAAATGGAAA TACCTTTGTT GGATAGAGAG 15559 .......... .......... .......... .......... .......... .......... 107 GCTGTTTTCG ATGAAAGGAA ATACATTTGT GGGATAGAGA GGTTGTTTCT GCTAAAAGGA 15619 .......... .......... .......... .......... .......... .......... 107 AATACCTTTG TGGGGGTAGA GAGGCTGTTT CCGATGAAAG GAAACACCTT TATGGTGTAG 15679 .......... .......... .......... .......... .......... .......... 107 AGATGCTTTT AAGATGATTA CATTAATTCA TAGAAGGAAA TATTGTTTGT TTTTAGTAAA 15739 .......... .......... .......... .......... .......... .......... 107 ACACTAACTA TCTTGGATTT GTTTGTAGCT AATTCGTGAT TTCAGTTACT TGTTGTGTTT 15799 .......... .......... .......... .......... .......... .......... 107 CTTGTCTTGT TTAAACAAAG ACATTTCAGC TGGCAGAAGT GGATTTAGGA TGTGAATTTT 15859 .......... .......... .......... .......... .......... .......... 107 ATGGCTAGAG TATGAAAGTA CATCACAACC CATTATAGGG TATGAAATCT ATTACACGAA 15919 .......... .......... .......... .......... .......... .......... 107 CTTATTTGGT GGCTTTTTAA AACACGTATG CGGTCTGAGC TAAACTTGCT GGATTCGGAC 15979 .......... .......... .......... .......... .......... .......... 107 AAACCATAAC TCCTATGATA CATTCGCTTG CCTGATGAGA GTTTCTAATA TTTCTCTTCG 16039 .......... .......... .......... .......... .......... .......... 107 CCCCTTCATT CATCTGATAT TGTTATATAA GGTTTTAAAT TGGGACGCTT AGGAGGCCAA 16099 .......... .......... .......... .......... .......... .......... 107 GCATAGTTTG AGAGTGCTGT ATTGCCTGCT TTAATTGCTA ATCAATTCTG CTAATGTTTA 16159 .......... .......... .......... .......... .......... .......... 107 GAACTCTTGC CTCAAGCATG CTTTTTGACA TCTAAAATTT GCTTTCTAAC TCCTAATTGA 16219 .......... .......... .......... .......... .......... .......... 107 GCTTATTTGG ATCCTTTTAG TATTAATTCT AGAATCGTTT CCTTTGTAAT GTTGCAATGA 16279 .......... .......... .......... .......... .......... .......... 107 TGCTGTTGCT AGATCAGTAA TATTTCTTTT AACCTCTTAA TGCTAATAAT GCTTGTTCGA 16339 .......... .......... .......... .......... .......... .......... 107 TCATGTCAAG TTGCATATAC TGGCTGTAAC GTCTTGGAAA TTTTCTTCGA TTAATGAATC 16399 .......... .......... .......... .......... .......... .......... 107 CTCATTATTG TTATGCTGTT TGGACTTCTG CTGATATAAT GAACCCACAC TTGCATGGGG 16459 .......... .......... .......... .......... .......... .......... 107 GTCCAGGCAA GATATGCCAG AGGTATTAGG TAATAGATGT AGTCAAAAGC TTATGGCAAT 16519 .......... .......... .......... .......... .......... .......... 107 AAACATGATA TTATCACAAG AATGGGCTGT AAGCTGTAGA TTGCTGTAAG TTCTTCAATG 16579 .......... .......... .......... .......... .......... .......... 107 AAAGTGAGGC ATCAATATAT ACATAAAAAA AGAACTATTT GAATAATACA TTCAAATGGG 16639 .......... .......... .......... .......... .......... .......... 107 ATTTGCATTT GGGCAATGAC TAGTTCTTCC AAACATCAGA CAAACGAAAT AGTTGAGAAT 16699 .......... .......... .......... .......... .......... .......... 107 TTACTTGTTT GCTACTAAAT TATGAAACAC TTCCTCTCTT TCCCTGCACC TGCAAATCAA 16759 .......... .......... .......... .......... .......... .......... 107 ACCTTCTTCC ATTTTTAGAG ATGTGAACGA GTTTACAGTT GGATGGAACG AACATTTATT 16819 .......... .......... .......... .......... .......... .......... 107 AACCCCTTGG TAAAATTTTA CAAAATTAAG CACAAATAGG AGAGTGCTTT TGTCGGAAAC 16879 .......... .......... .......... .......... .......... .......... 107 TTTACAGCAA TATCTAAGGG AGAATTCCCT TCCGCCATCT TAAGAGTGTT TGTGTACATG 16939 .......... .......... .......... .......... .......... .......... 107 GAGGGAATTG AATAGCCTTT CTTTTTCTGG CATTTTGGAG ATAAGTAGAT CCGTTGGGAT 16999 .......... .......... .......... .......... .......... .......... 107 AGCGGTTGTG ATGCAATAGT TGTTGCTATA TTGGTTCCAT TGAGTATCAA GTCTTCTGGA 17059 .......... .......... .......... .......... .......... .......... 107 GTTAAATGGG TGAATGTGCT ATTGCTGACG TCCTACTTGC TGCTATGCCA CGCACCGATA 17119 .......... .......... .......... .......... .......... .......... 107 TCACTCATAC TGGAAAGATA AAATAAAATG AAATAGAAAC CAAAAGGCAA AAAATGGAAG 17179 .......... .......... .......... .......... .......... .......... 107 ACAGATTGAT ATATATGAAC TGCTATATAT TCATTCTTTC TTGTTCTTGT GCAGACTACA 17239 |||||| .......... .......... .......... .......... .......... ....ACTACA 113 AAATTTGGGA GCTCTAGAAT GGGATAAAGT AGTGCACGGA CATCAGGGCT GGAGGCTTTT 17299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTTGGGA GCTCTAGAAT GGGATAAAGT AGTGCACGGA CATCAGGGCT GGAGGCTTTT 173 CACTTGTATC TGGTTACATG CTGGTGTTGT TCATCTGCTT GCAAACATGT TGAGTTTGGT 17359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTGTATC TGGTTACATG CTGGTGTTGT TCATCTGCTT GCAAACATGT TGAGTTTGGT 233 ATTCATTGGT ATTCGCCTCG AGCAGCAGTT TGGATTTGGT ACAATTCTCC TCCCTGTGCC 17419 |||||||||| |||||||||| |||||||||| |||||||| ATTCATTGGT ATTCGCCTCG AGCAGCAGTT TGGATTTG.. .......... .......... 271 CTCAAATATT TCTTCATGTT CTTTTGGATA ACACTAGTAC ACAACAAATG TCTTTTTATG 17479 .......... .......... .......... .......... .......... .......... 271 CATAAGCAAT TCATTCTACT TTCCTCTAAA TTGTGCCCGT GTCTAGCTTC CTCGGCTCCG 17539 .......... .......... .......... .......... .......... .......... 271 TTTGTCATTA CAGTTCATCT GCTGAAATAG AAGTACTGTT TTTACTTGCA ATCTCTTTAA 17599 .......... .......... .......... .......... .......... .......... 271 CATCAACAAT TTCAGTCACT TCTTTCTGAA ATATAACCCC ACCTTCAATT TTCTTAACCT 17659 .......... .......... .......... .......... .......... .......... 271 TGAGCTGACT AGTGTCTTAA TTCACTTTTT GTTCTTATAT TTATATCTCT AATGTTATGT 17719 .......... .......... .......... .......... .......... .......... 271 GCAGTCCGGG TGGGGATTAT CTACGTTTTG TCAGGAATTG GTGGCAGTGT TCTTTCTTGC 17779 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCCGGG TGGGGATTAT CTACGTTTTG TCAGGAATTG GTGGCAGTGT TCTTTCTTGC 327 CTTTTCATTC AAGGTAGCAT CTCTGTTGGA GCTTCTGGTG CTCTATTTGG ACTTCTGGGA 17839 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTCATTC AAAGTAGCAT CTCTGTTGGA GCTTCTGGTG CTCTATTTGG ACTTCTGGGA 387 GCAATGTTAT C 17850 |||||||||| | GCAATGTTAT C 398 hqPGS_C08HBa0197J17.1+_SGN-E259523+ (15020 15126,17234 17397,17724 17850) ******************************************************************************** EST sequence 54 +strand 532 n (File: SGN-E245703+) 1 TTTAATCCAC ATAAGTTTCT CCTTGTTCCA CCAAACTTTA CACAGAGAAA AAGCAAACAA 61 ATCCTTCAAC AACAAAAGAA AATGTGCTCA CCGCGTTTTT CCTATCTGAG AGATACTTCC 121 TTAGCTGTTA AAAAAACTCC TCACAACCCC TAAAAATCCT CTCTTTTTTC AGTTTTAATT 181 CTTCCCCAAT TCTTGAAAAT TCATTTCTAA AGCTTTCTTC ATCTCTGCTT CAAAGCTACT 241 TCACCCCACC CACCCCCACA ATATAAATAA ACTTTGAAGA AATTGCTGAG TTTGTTCAGT 301 TTTTCTGAAA TCAAGAATGA TGGGTAATAG AGATCTGGAG AGGGGAGGTG GAACAAAGCC 361 AAGAAATGGG AGTTACCAAC CACCCCCAAC AACAGCAGCA CCTTACTATA TGGAAACTTC 421 TGAATCACAG TGGACTTCTT GGCTAGTCCC TATGATTGTT GTAGCCAATG TAGCTATGTT 481 TATTGTCATC ATGTTTGTTA ACAATTGCCC AAGTAATATC AATAATTTTG GC Predicted gene structure (within gDNA segment 13897 to 15638): Exon 1 14497 15028 ( 532 n); cDNA 1 532 ( 532 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E245703+ 1.000 532 1.000 C PGS_C08HBa0197J17.1+_SGN-E245703+ (14497 15028) Alignment (genomic DNA sequence = upper lines): TTTAATCCAC ATAAGTTTCT CCTTGTTCCA CCAAACTTTA CACAGAGAAA AAGCAAACAA 14556 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAATCCAC ATAAGTTTCT CCTTGTTCCA CCAAACTTTA CACAGAGAAA AAGCAAACAA 60 ATCCTTCAAC AACAAAAGAA AATGTGCTCA CCGCGTTTTT CCTATCTGAG AGATACTTCC 14616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTTCAAC AACAAAAGAA AATGTGCTCA CCGCGTTTTT CCTATCTGAG AGATACTTCC 120 TTAGCTGTTA AAAAAACTCC TCACAACCCC TAAAAATCCT CTCTTTTTTC AGTTTTAATT 14676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCTGTTA AAAAAACTCC TCACAACCCC TAAAAATCCT CTCTTTTTTC AGTTTTAATT 180 CTTCCCCAAT TCTTGAAAAT TCATTTCTAA AGCTTTCTTC ATCTCTGCTT CAAAGCTACT 14736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCCCAAT TCTTGAAAAT TCATTTCTAA AGCTTTCTTC ATCTCTGCTT CAAAGCTACT 240 TCACCCCACC CACCCCCACA ATATAAATAA ACTTTGAAGA AATTGCTGAG TTTGTTCAGT 14796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCCCACC CACCCCCACA ATATAAATAA ACTTTGAAGA AATTGCTGAG TTTGTTCAGT 300 TTTTCTGAAA TCAAGAATGA TGGGTAATAG AGATCTGGAG AGGGGAGGTG GAACAAAGCC 14856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTGAAA TCAAGAATGA TGGGTAATAG AGATCTGGAG AGGGGAGGTG GAACAAAGCC 360 AAGAAATGGG AGTTACCAAC CACCCCCAAC AACAGCAGCA CCTTACTATA TGGAAACTTC 14916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATGGG AGTTACCAAC CACCCCCAAC AACAGCAGCA CCTTACTATA TGGAAACTTC 420 TGAATCACAG TGGACTTCTT GGCTAGTCCC TATGATTGTT GTAGCCAATG TAGCTATGTT 14976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATCACAG TGGACTTCTT GGCTAGTCCC TATGATTGTT GTAGCCAATG TAGCTATGTT 480 TATTGTCATC ATGTTTGTTA ACAATTGCCC AAGTAATATC AATAATTTTG GC 15028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TATTGTCATC ATGTTTGTTA ACAATTGCCC AAGTAATATC AATAATTTTG GC 532 hqPGS_C08HBa0197J17.1+_SGN-E245703+ (14497 15028) ******************************************************************************** EST sequence 13 +strand 597 n (File: SGN-E271146+) 1 AAACAAATCC TTCAACAACA AAAGAAAATG TGCTCACCGC GTTTTTCCTA TCTGAGAGAT 61 ACTTCCTTAG CTGTTAAAAA AACTCCTCAC AACCCCTAAA AATCCTCTCT TTTTTCAGTT 121 TTAATTCTTC CCCAATTCTT GAAAATTCAT TTCTAAAGCT TTCTTCATCT CTGCTTCAAA 181 GCTACTTCAC CCCACCCACC CCCACAATAT AAATAAACTT TGAAGAAATT GCTGAGTTTG 241 TTCAGTTTTT CTGAAATCAA GAATGATGGG TAATAGAGAT CTGGAGAGGG GAGGTGGAAC 301 AAAGCCAAGA AATGGGAGTT ACCAACCACC CCCAACAACA GCAGCACCTT ACTATATGGA 361 AACTTCTGAA TCACAGTGGA CTTCTTGGCT AGTCCCTATG ATTGTTGTAG CCAATGTAGC 421 TATGTTTATT GTCATCATGT TTGTTAACAA TTGCCCAAGT AATATCAATA ATTTTGGCAG 481 AGGTGGAGGA CGCCGCCAGT GTGTTGCCAG GTTTCTTGGG AGGCTTTCTT TTCAACCTCT 541 TCAAGATAAT CCACTTTTTG GACCCTCTTC ATCCACACTA CAAAAATTGG GAGCTCT Predicted gene structure (within gDNA segment 13951 to 15946): Exon 1 14551 15126 ( 576 n); cDNA 1 576 ( 576 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E271146+ 1.000 576 0.965 C PGS_C08HBa0197J17.1+_SGN-E271146+ (14551 15126) Alignment (genomic DNA sequence = upper lines): AAACAAATCC TTCAACAACA AAAGAAAATG TGCTCACCGC GTTTTTCCTA TCTGAGAGAT 14610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAAATCC TTCAACAACA AAAGAAAATG TGCTCACCGC GTTTTTCCTA TCTGAGAGAT 60 ACTTCCTTAG CTGTTAAAAA AACTCCTCAC AACCCCTAAA AATCCTCTCT TTTTTCAGTT 14670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCCTTAG CTGTTAAAAA AACTCCTCAC AACCCCTAAA AATCCTCTCT TTTTTCAGTT 120 TTAATTCTTC CCCAATTCTT GAAAATTCAT TTCTAAAGCT TTCTTCATCT CTGCTTCAAA 14730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTCTTC CCCAATTCTT GAAAATTCAT TTCTAAAGCT TTCTTCATCT CTGCTTCAAA 180 GCTACTTCAC CCCACCCACC CCCACAATAT AAATAAACTT TGAAGAAATT GCTGAGTTTG 14790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACTTCAC CCCACCCACC CCCACAATAT AAATAAACTT TGAAGAAATT GCTGAGTTTG 240 TTCAGTTTTT CTGAAATCAA GAATGATGGG TAATAGAGAT CTGGAGAGGG GAGGTGGAAC 14850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGTTTTT CTGAAATCAA GAATGATGGG TAATAGAGAT CTGGAGAGGG GAGGTGGAAC 300 AAAGCCAAGA AATGGGAGTT ACCAACCACC CCCAACAACA GCAGCACCTT ACTATATGGA 14910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCCAAGA AATGGGAGTT ACCAACCACC CCCAACAACA GCAGCACCTT ACTATATGGA 360 AACTTCTGAA TCACAGTGGA CTTCTTGGCT AGTCCCTATG ATTGTTGTAG CCAATGTAGC 14970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTCTGAA TCACAGTGGA CTTCTTGGCT AGTCCCTATG ATTGTTGTAG CCAATGTAGC 420 TATGTTTATT GTCATCATGT TTGTTAACAA TTGCCCAAGT AATATCAATA ATTTTGGCAG 15030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTTTATT GTCATCATGT TTGTTAACAA TTGCCCAAGT AATATCAATA ATTTTGGCAG 480 AGGTGGAGGA CGCCGCCAGT GTGTTGCCAG GTTTCTTGGG AGGCTTTCTT TTCAACCTCT 15090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGAGGA CGCCGCCAGT GTGTTGCCAG GTTTCTTGGG AGGCTTTCTT TTCAACCTCT 540 TCAAGATAAT CCACTTTTTG GACCCTCTTC ATCCAC 15126 |||||||||| |||||||||| |||||||||| |||||| TCAAGATAAT CCACTTTTTG GACCCTCTTC ATCCAC 576 hqPGS_C08HBa0197J17.1+_SGN-E271146+ (14551 15126) ******************************************************************************** EST sequence 37 +strand 542 n (File: SGN-E268360+) 1 GCGTTTTTCC TATCTGAGAG ATACTTCCTT AGCTGTTAAA AAAACTCCTC ACAACCCCTA 61 AAAATCCTCT CTTTTTTCAG TTTTAATTCT TCCCCAATTC TTGAAAATTC ATTTCTAAAG 121 CTTTCTTCAT CTCTGCTTCA AAGCTACTTC ACCCCACCCA CCCCCACAAT ATAAATAAAC 181 TTTGAAGAAA TTGCTGAGTT TGTTCAGTTT TTCTGAAATC AAGAATGATG GGTAATAGAG 241 ATCTGGAGAG GGGAGGTGGA ACAAAGCCAA GAAATGGGAG TTACCAACCA CCCCCAACAA 301 CAGCAGCACC TTACTATATG GAAACTTCTG AATCACAGTG GACTTCTTGG CTAGTCCCTA 361 TGATTGTTGT AGCCAATGTA GCTATGTTTA TTGTCATCAT GTTTGTTAAC AATTGCCCAA 421 GTAATATCAA TAATTTTGGC AGAGGTGGAG GACGCCGCCA GTGTGTTGCC AGGTTTCTTG 481 GGAGGCTTTC TTTTCAACCT CTTCAAGATA ATCCACTTTT TGGACCCTCT TCATCCACAC 541 TA Predicted gene structure (within gDNA segment 13989 to 15776): Exon 1 14589 15126 ( 538 n); cDNA 1 538 ( 538 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E268360+ 1.000 538 0.993 C PGS_C08HBa0197J17.1+_SGN-E268360+ (14589 15126) Alignment (genomic DNA sequence = upper lines): GCGTTTTTCC TATCTGAGAG ATACTTCCTT AGCTGTTAAA AAAACTCCTC ACAACCCCTA 14648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTTTTTCC TATCTGAGAG ATACTTCCTT AGCTGTTAAA AAAACTCCTC ACAACCCCTA 60 AAAATCCTCT CTTTTTTCAG TTTTAATTCT TCCCCAATTC TTGAAAATTC ATTTCTAAAG 14708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCTCT CTTTTTTCAG TTTTAATTCT TCCCCAATTC TTGAAAATTC ATTTCTAAAG 120 CTTTCTTCAT CTCTGCTTCA AAGCTACTTC ACCCCACCCA CCCCCACAAT ATAAATAAAC 14768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTTCAT CTCTGCTTCA AAGCTACTTC ACCCCACCCA CCCCCACAAT ATAAATAAAC 180 TTTGAAGAAA TTGCTGAGTT TGTTCAGTTT TTCTGAAATC AAGAATGATG GGTAATAGAG 14828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAGAAA TTGCTGAGTT TGTTCAGTTT TTCTGAAATC AAGAATGATG GGTAATAGAG 240 ATCTGGAGAG GGGAGGTGGA ACAAAGCCAA GAAATGGGAG TTACCAACCA CCCCCAACAA 14888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGGAGAG GGGAGGTGGA ACAAAGCCAA GAAATGGGAG TTACCAACCA CCCCCAACAA 300 CAGCAGCACC TTACTATATG GAAACTTCTG AATCACAGTG GACTTCTTGG CTAGTCCCTA 14948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCACC TTACTATATG GAAACTTCTG AATCACAGTG GACTTCTTGG CTAGTCCCTA 360 TGATTGTTGT AGCCAATGTA GCTATGTTTA TTGTCATCAT GTTTGTTAAC AATTGCCCAA 15008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTGTTGT AGCCAATGTA GCTATGTTTA TTGTCATCAT GTTTGTTAAC AATTGCCCAA 420 GTAATATCAA TAATTTTGGC AGAGGTGGAG GACGCCGCCA GTGTGTTGCC AGGTTTCTTG 15068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATATCAA TAATTTTGGC AGAGGTGGAG GACGCCGCCA GTGTGTTGCC AGGTTTCTTG 480 GGAGGCTTTC TTTTCAACCT CTTCAAGATA ATCCACTTTT TGGACCCTCT TCATCCAC 15126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGAGGCTTTC TTTTCAACCT CTTCAAGATA ATCCACTTTT TGGACCCTCT TCATCCAC 538 hqPGS_C08HBa0197J17.1+_SGN-E268360+ (14589 15126) ******************************************************************************** EST sequence 41 +strand 380 n (File: SGN-E307837+) 1 TTCCTTAGCT GTTAAAAAAA CTCCTCACAA CCCCTAAAAA TCCTCTCTTT TTTCAGTTTT 61 AATTCTTCCC CAATTCTTGA AAATTCATTT CTAAAGCTTT CTTCATCTCT GCTTCAAAGC 121 TACTTCACCC CACCCACCCC CACAATATAA ATAAACTTTG AAGAAATTGC TGAGTTTGTT 181 CAGTTTTTCT GAAATCAAGA ATGATGGGTA ATAGAGATCT GGAGAGGGGA GGTGGAACAA 241 AGCCAAGAAA TGGGAGTTAC CAACCACCCC CAACAACAGC AGCACCTTAC TATATGGAAA 301 CTTCTGAATC ACAGTGGACT TCTTGGCTAG TCCCTATGAT TGTTGAAGCC AATGTAGCTA 361 TGTCTATTGT CATCATGTTT Predicted gene structure (within gDNA segment 14013 to 15602): Exon 1 14613 14992 ( 380 n); cDNA 1 380 ( 380 n); score: 0.995 MATCH C08HBa0197J17.1+ SGN-E307837+ 0.995 380 1.000 C PGS_C08HBa0197J17.1+_SGN-E307837+ (14613 14992) Alignment (genomic DNA sequence = upper lines): TTCCTTAGCT GTTAAAAAAA CTCCTCACAA CCCCTAAAAA TCCTCTCTTT TTTCAGTTTT 14672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTAGCT GTTAAAAAAA CTCCTCACAA CCCCTAAAAA TCCTCTCTTT TTTCAGTTTT 60 AATTCTTCCC CAATTCTTGA AAATTCATTT CTAAAGCTTT CTTCATCTCT GCTTCAAAGC 14732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCTTCCC CAATTCTTGA AAATTCATTT CTAAAGCTTT CTTCATCTCT GCTTCAAAGC 120 TACTTCACCC CACCCACCCC CACAATATAA ATAAACTTTG AAGAAATTGC TGAGTTTGTT 14792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCACCC CACCCACCCC CACAATATAA ATAAACTTTG AAGAAATTGC TGAGTTTGTT 180 CAGTTTTTCT GAAATCAAGA ATGATGGGTA ATAGAGATCT GGAGAGGGGA GGTGGAACAA 14852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTTTCT GAAATCAAGA ATGATGGGTA ATAGAGATCT GGAGAGGGGA GGTGGAACAA 240 AGCCAAGAAA TGGGAGTTAC CAACCACCCC CAACAACAGC AGCACCTTAC TATATGGAAA 14912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAGAAA TGGGAGTTAC CAACCACCCC CAACAACAGC AGCACCTTAC TATATGGAAA 300 CTTCTGAATC ACAGTGGACT TCTTGGCTAG TCCCTATGAT TGTTGTAGCC AATGTAGCTA 14972 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CTTCTGAATC ACAGTGGACT TCTTGGCTAG TCCCTATGAT TGTTGAAGCC AATGTAGCTA 360 TGTTTATTGT CATCATGTTT 14992 ||| |||||| |||||||||| TGTCTATTGT CATCATGTTT 380 hqPGS_C08HBa0197J17.1+_SGN-E307837+ (14613 14992) ******************************************************************************** EST sequence 19 +strand 531 n (File: SGN-E273108+) 1 TTAGCTGTTA AAAAAACTCC TCACAACCCC TAAAAATCCT CTCTTTTTTC AGTTTTAATT 61 CTTCCCCAAT TCTTGAAAAT TCATTTCTAA AGCTTTCTTC ATCTCTGCTT CAAAGCTACT 121 TCACCCCACC CACCCCCACA ATATAAATAA ACTTTGAAGA AATTGCTGAG TTTGTTCAGT 181 TTTTCTGAAA TCAAGAATGA TGGGTAATAG AGATCTGGAG AGGGGAGGTG GAACAAAGCC 241 AAGAAATGGG AGTTACCAAC CACCCCCAAC AACAGCAGCA CCTTACTATA TGGAAACTTC 301 TGAATCACAG TGGACTTCTT GGCTAGTCCC TATGATTGTT GTAGCCAATG TAGCTATGTT 361 TATTGTCATC ATGTTTGTTA ACAATTGCCC AAGTAATATC AATAATTTTG GCAGAGGTGG 421 AGGACGCCGC CAGTGTGTTG CCAGGTTTCT TGGGAGGCTT TCTTTTCAAC CTCTTCAAGA 481 TAATCCACTT TTTGGACCCT CTTCATCCAC ACTACAAAAT TTGGGAGCTC T Predicted gene structure (within gDNA segment 14017 to 15946): Exon 1 14617 15126 ( 510 n); cDNA 1 510 ( 510 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E273108+ 1.000 510 0.960 C PGS_C08HBa0197J17.1+_SGN-E273108+ (14617 15126) Alignment (genomic DNA sequence = upper lines): TTAGCTGTTA AAAAAACTCC TCACAACCCC TAAAAATCCT CTCTTTTTTC AGTTTTAATT 14676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCTGTTA AAAAAACTCC TCACAACCCC TAAAAATCCT CTCTTTTTTC AGTTTTAATT 60 CTTCCCCAAT TCTTGAAAAT TCATTTCTAA AGCTTTCTTC ATCTCTGCTT CAAAGCTACT 14736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCCCAAT TCTTGAAAAT TCATTTCTAA AGCTTTCTTC ATCTCTGCTT CAAAGCTACT 120 TCACCCCACC CACCCCCACA ATATAAATAA ACTTTGAAGA AATTGCTGAG TTTGTTCAGT 14796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCCCACC CACCCCCACA ATATAAATAA ACTTTGAAGA AATTGCTGAG TTTGTTCAGT 180 TTTTCTGAAA TCAAGAATGA TGGGTAATAG AGATCTGGAG AGGGGAGGTG GAACAAAGCC 14856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTGAAA TCAAGAATGA TGGGTAATAG AGATCTGGAG AGGGGAGGTG GAACAAAGCC 240 AAGAAATGGG AGTTACCAAC CACCCCCAAC AACAGCAGCA CCTTACTATA TGGAAACTTC 14916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATGGG AGTTACCAAC CACCCCCAAC AACAGCAGCA CCTTACTATA TGGAAACTTC 300 TGAATCACAG TGGACTTCTT GGCTAGTCCC TATGATTGTT GTAGCCAATG TAGCTATGTT 14976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATCACAG TGGACTTCTT GGCTAGTCCC TATGATTGTT GTAGCCAATG TAGCTATGTT 360 TATTGTCATC ATGTTTGTTA ACAATTGCCC AAGTAATATC AATAATTTTG GCAGAGGTGG 15036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGTCATC ATGTTTGTTA ACAATTGCCC AAGTAATATC AATAATTTTG GCAGAGGTGG 420 AGGACGCCGC CAGTGTGTTG CCAGGTTTCT TGGGAGGCTT TCTTTTCAAC CTCTTCAAGA 15096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACGCCGC CAGTGTGTTG CCAGGTTTCT TGGGAGGCTT TCTTTTCAAC CTCTTCAAGA 480 TAATCCACTT TTTGGACCCT CTTCATCCAC 15126 |||||||||| |||||||||| |||||||||| TAATCCACTT TTTGGACCCT CTTCATCCAC 510 hqPGS_C08HBa0197J17.1+_SGN-E273108+ (14617 15126) ******************************************************************************** EST sequence 38 +strand 340 n (File: SGN-E200787+) 1 TCTGCTTCAA AGCTACTTCA CCCCACCCAC CCCCACAATA TAAATAAACT TTGAAGAAAT 61 TGCTGAGTTT GTTCAGTTTT TCTGAAATCA AGAATGATGG GTAATAGAGA TCTGGAGAGG 121 GGAGGTGGAA CAAAGCCAAG AAATGGGAGT TACCAACCAC CCCCAACAAC AGCAGCACCT 181 TACTATATGG AAACTTCTGA ATCACAGTGG ACTTCTTGGC TAGTCCCTAT GATTGTTGTA 241 GCCAATGTAG CTATGTTTAT TGTCATCATG TTTGTTAACA ATTGCCCAAG TAATATCAAT 301 AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA Predicted gene structure (within gDNA segment 14120 to 15669): Exon 1 14720 15059 ( 340 n); cDNA 1 340 ( 340 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E200787+ 1.000 340 1.000 C PGS_C08HBa0197J17.1+_SGN-E200787+ (14720 15059) Alignment (genomic DNA sequence = upper lines): TCTGCTTCAA AGCTACTTCA CCCCACCCAC CCCCACAATA TAAATAAACT TTGAAGAAAT 14779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTTCAA AGCTACTTCA CCCCACCCAC CCCCACAATA TAAATAAACT TTGAAGAAAT 60 TGCTGAGTTT GTTCAGTTTT TCTGAAATCA AGAATGATGG GTAATAGAGA TCTGGAGAGG 14839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGTTT GTTCAGTTTT TCTGAAATCA AGAATGATGG GTAATAGAGA TCTGGAGAGG 120 GGAGGTGGAA CAAAGCCAAG AAATGGGAGT TACCAACCAC CCCCAACAAC AGCAGCACCT 14899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGTGGAA CAAAGCCAAG AAATGGGAGT TACCAACCAC CCCCAACAAC AGCAGCACCT 180 TACTATATGG AAACTTCTGA ATCACAGTGG ACTTCTTGGC TAGTCCCTAT GATTGTTGTA 14959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTATATGG AAACTTCTGA ATCACAGTGG ACTTCTTGGC TAGTCCCTAT GATTGTTGTA 240 GCCAATGTAG CTATGTTTAT TGTCATCATG TTTGTTAACA ATTGCCCAAG TAATATCAAT 15019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAATGTAG CTATGTTTAT TGTCATCATG TTTGTTAACA ATTGCCCAAG TAATATCAAT 300 AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA 15059 |||||||||| |||||||||| |||||||||| |||||||||| AATTTTGGCA GAGGTGGAGG ACGCCGCCAG TGTGTTGCCA 340 hqPGS_C08HBa0197J17.1+_SGN-E200787+ (14720 15059) ******************************************************************************** EST sequence 132 -strand 836 n (File: SGN-E549268-) 1 AGAATGGGAT AAAGTAGTGC ACGGACATCA GGGCTGGAGG CTTTTCACTT GTATCTGGTT 61 ACATGCTGGT GTTGTTCATC TGCTTGCCAA CATGTTGAGT TTGGTATTCA TTGGTATTCG 121 CCTCGAGCAG CAGTTTGGAT TTGTCCGGGT AGGGATTATC TACCTTTTGT CAGGAATTGG 181 TGGCAGTGTT CTTTCTTGCC TTTTTATTCA AGGTAGCATC TCCGTTGGAG CTTCTGGTGC 241 TCTATTTGGA CTTCTTGGAG CAATGTTATC GGAGCTTCTT ACTAACTGGA GTATATATAC 301 CAATAAGGCT GCAGCTCTTA TCACTCTCAT TATCATCATC GCGATTAACT TAGCTGTTGG 361 TCTTCTTCCT CATGTCGATA ACTATGCCCA TATTGGAGGT TTCATGAGTG GTTTTCTTCT 421 TGGCTTTGTT CTGCTACTAC GACCTCAGTT TGGTTGGCTC GAAAGGCAAC ATCTTCCAGC 481 TGAAGGTCGT CTCAAGTCCA AGTTCAAAGC TTACCAATAT GTCCTCCTGC TGATTGCCTC 541 GATTTTGTTG ATTGTCGGAT TCACAGTGGG ATTGGTGATG TTATTTAGAG GTGTGAAGGC 601 AAATGAGCAT TGCGATTGGT GTCGTTATTT AAGCTGTTTG CGTACATCAA GATGGAACTG 661 TGAAAATTAA CTGAAGAGCT TTATGTAATT CTGTCCTCCT TTTTACATAT TGTTCATATG 721 CTATTAAGTA TATTACTTTT ATATGTATAG TGATTGTTGG TTTTGTAATT TGTGGTATGG 781 ATTATATATT GTAAATCTGT TATACTATTT GCATTCGATT TATATTAAAA AAAAAA Predicted gene structure (within gDNA segment 16645 to 19680): Exon 1 17255 17397 ( 143 n); cDNA 1 143 ( 143 n); score: 0.993 Intron 1 17398 17723 ( 326 n); Pd: 0.964 (s: 1.00), Pa: 0.997 (s: 0.96) Exon 2 17724 17887 ( 164 n); cDNA 144 307 ( 164 n); score: 0.970 Intron 2 17888 18011 ( 124 n); Pd: 0.987 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 18012 18262 ( 251 n); cDNA 308 558 ( 251 n); score: 0.992 Intron 3 18263 18638 ( 376 n); Pd: 0.866 (s: 0.98), Pa: 0.990 (s: 0.98) Exon 4 18639 18910 ( 272 n); cDNA 559 819 ( 261 n); score: 0.915 PPA cDNA 827 836 MATCH C08HBa0197J17.1+ SGN-E549268- 0.963 830 0.993 C PGS_C08HBa0197J17.1+_SGN-E549268- (17255 17397,17724 17887,18012 18262,18639 18910) Alignment (genomic DNA sequence = upper lines): AGAATGGGAT AAAGTAGTGC ACGGACATCA GGGCTGGAGG CTTTTCACTT GTATCTGGTT 17314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATGGGAT AAAGTAGTGC ACGGACATCA GGGCTGGAGG CTTTTCACTT GTATCTGGTT 60 ACATGCTGGT GTTGTTCATC TGCTTGCAAA CATGTTGAGT TTGGTATTCA TTGGTATTCG 17374 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ACATGCTGGT GTTGTTCATC TGCTTGCCAA CATGTTGAGT TTGGTATTCA TTGGTATTCG 120 CCTCGAGCAG CAGTTTGGAT TTGGTACAAT TCTCCTCCCT GTGCCCTCAA ATATTTCTTC 17434 |||||||||| |||||||||| ||| CCTCGAGCAG CAGTTTGGAT TTG....... .......... .......... .......... 143 ATGTTCTTTT GGATAACACT AGTACACAAC AAATGTCTTT TTATGCATAA GCAATTCATT 17494 .......... .......... .......... .......... .......... .......... 143 CTACTTTCCT CTAAATTGTG CCCGTGTCTA GCTTCCTCGG CTCCGTTTGT CATTACAGTT 17554 .......... .......... .......... .......... .......... .......... 143 CATCTGCTGA AATAGAAGTA CTGTTTTTAC TTGCAATCTC TTTAACATCA ACAATTTCAG 17614 .......... .......... .......... .......... .......... .......... 143 TCACTTCTTT CTGAAATATA ACCCCACCTT CAATTTTCTT AACCTTGAGC TGACTAGTGT 17674 .......... .......... .......... .......... .......... .......... 143 CTTAATTCAC TTTTTGTTCT TATATTTATA TCTCTAATGT TATGTGCAGT CCGGGTGGGG 17734 | |||||| ||| .......... .......... .......... .......... .........T CCGGGTAGGG 154 ATTATCTACG TTTTGTCAGG AATTGGTGGC AGTGTTCTTT CTTGCCTTTT CATTCAAGGT 17794 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTATCTACC TTTTGTCAGG AATTGGTGGC AGTGTTCTTT CTTGCCTTTT TATTCAAGGT 214 AGCATCTCTG TTGGAGCTTC TGGTGCTCTA TTTGGACTTC TGGGAGCAAT GTTATCGGAG 17854 |||||||| | |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AGCATCTCCG TTGGAGCTTC TGGTGCTCTA TTTGGACTTC TTGGAGCAAT GTTATCGGAG 274 CTTCTTACTA ACTGGAGTAT ATATACCAAT AAGGTATAAA CCCTGCTATT CTACTGTTAT 17914 |||||||||| |||||||||| |||||||||| ||| CTTCTTACTA ACTGGAGTAT ATATACCAAT AAG....... .......... .......... 307 TATTTGTGTT CTTTCCCCTG TTGAGGAGGT TATTCGTTTT ATTTTATAAC ACGTTCTAAG 17974 .......... .......... .......... .......... .......... .......... 307 TACTTAATTC CGGTACTAAT TAATCTCATT TATACAGGCT GCAGCTCTTA TCACTCTCAT 18034 ||| |||||||||| |||||||||| .......... .......... .......... .......GCT GCAGCTCTTA TCACTCTCAT 330 TATCATCATC GCGATTAACT TAGCTGTTGG TCTTCTTCCT CATGTCGATA ACTATGCCCA 18094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATCATC GCGATTAACT TAGCTGTTGG TCTTCTTCCT CATGTCGATA ACTATGCCCA 390 TATTGGAGGT TTCATGGGTG GTTTTCTTCT TGGCTTTGTT CTGCTACTAC GACCTCAGTT 18154 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGAGGT TTCATGAGTG GTTTTCTTCT TGGCTTTGTT CTGCTACTAC GACCTCAGTT 450 TGGTTGGCTC GAAAGGCAAC ATCTTCCAGC TGAAGGTCGT CTCAAGTCCA AGTTCAAAGC 18214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGGCTC GAAAGGCAAC ATCTTCCAGC TGAAGGTCGT CTCAAGTCCA AGTTCAAAGC 510 TTACCAATAC GTCCTCCTGC TGATTGCCTC GATTTTGTTG ATTGTCGGGT AAGCTCTCTC 18274 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTACCAATAT GTCCTCCTGC TGATTGCCTC GATTTTGTTG ATTGTCGG.. .......... 558 TCTGCTACGC CTAATCCTAC ATTTGCCTTA CAGCAGCGTC TAGAAAATAA GTTAGAACGG 18334 .......... .......... .......... .......... .......... .......... 558 TTGGTAACTT TTTCCTTTTT TTAGCTCAGA TTAAATTATT CGTCGATCAG GATCAGACGT 18394 .......... .......... .......... .......... .......... .......... 558 TGAGTATACT AACTATGCTC TCTGTATAGA GAGACGGATT TAGAATTCTA AGTCAAAATT 18454 .......... .......... .......... .......... .......... .......... 558 AGTGTTAAGA ACATGTCACC CACTACTCGT TTGTAACTAT GAGTGTTGAC TCACTATAAA 18514 .......... .......... .......... .......... .......... .......... 558 TATTTATATC AACTAGTTGA GATCACGCTA TATAAAATCT TGTGTATATA TATATATATG 18574 .......... .......... .......... .......... .......... .......... 558 TTAGAAGGAT TTAAGGTCAT ACATCGTCAG TGTATAATTT AATTTTCGTT GTAAAAATGT 18634 .......... .......... .......... .......... .......... .......... 558 ACAGATTCAC TGTGGGATTG GTGATGTTAT TTAGAGGTGT GAAGGCAAAT GAGCATTGCG 18694 |||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATTCAC AGTGGGATTG GTGATGTTAT TTAGAGGTGT GAAGGCAAAT GAGCATTGCG 614 ATTGGTGTCG TTATTTAAGC TGTTTGCGTA CATCAAGATG GAACTGTGAA AATTAACTGA 18754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGTGTCG TTATTTAAGC TGTTTGCGTA CATCAAGATG GAACTGTGAA AATTAACTGA 674 AGAGCTTTAT GTAATTCTGT CCTCCTTTTT ACATTAGACC AAAAAAAAAA AAACATATAG 18814 |||||||||| |||||||||| |||||||||| ||| | | | | | || AGAGCTTTAT GTAATTCTGT CCTCCTTTTT ACA-T----- -ATTGTTCAT ATGC---TA- 723 TTACGTATAT TACTTTTATA TGTATAGTGA TTGTTGGTTT TGTAATTTGT GGTATGGATC 18874 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTAAGTATAT TACTTTTATA TGTATAGTGA TTGTTGGTTT TGTAATTTGT GGTATGGATT 783 ATATATTGTA AATCTGTTAT ACTATTTGCA TTCGAT 18910 |||||||||| |||||||||| |||||||||| |||||| ATATATTGTA AATCTGTTAT ACTATTTGCA TTCGAT 819 hqPGS_C08HBa0197J17.1+_SGN-E549268- (17255 17397,17724 17887,18012 18262,18639 18910) ******************************************************************************** EST sequence 60 +strand 530 n (File: SGN-E275263+) 1 TTACAGTTGG ATGGAACGAA CATTTATTAA CCCCTTGGTA AAATTTTACA AAATTAAGCA 61 CAAATAGGAG AGTGCTTTTG TCGGAAACTT TACAGCAATA TCTAAGGGAG AATTCCCTTC 121 CGCCATCTTA AGAGTGTTTG TGTACATGGA GGGAATTGAA TAGCCTTTCT TTTTCTGGCA 181 TTTTGGAGAT AAGTAGATCC GTTGGGATAG CGGTTGTGAT GCAATAGTTG TTGCTATATT 241 GGTTCCATTG AGTATCAAGT CTTCTGGAGT TAAATGGGTG AATGTGCTAT TGCTGACGTC 301 CTACTTGCTG CTATGCCACG CACCGATATC ACTCATACTG GAAAGATAAA ATAAAATGAA 361 ATAGAAACCA AAAGGCAAAA AATGGAAGAC AGATTGATAT ATATGAACTG CTATATATTC 421 ATTCTTTCTT GTTCTTGTGC AGACTACAAA ATTTGGGAGC TCTAGAATGG GATAAAGTAG 481 TGCACGGACA TCAGGGCTGG AGGCTTTTCA CTTGTATCTG GTTACATGCT Predicted gene structure (within gDNA segment 16192 to 17931): Exon 1 16792 17321 ( 530 n); cDNA 1 530 ( 530 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E275263+ 1.000 530 1.000 C PGS_C08HBa0197J17.1+_SGN-E275263+ (16792 17321) Alignment (genomic DNA sequence = upper lines): TTACAGTTGG ATGGAACGAA CATTTATTAA CCCCTTGGTA AAATTTTACA AAATTAAGCA 16851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAGTTGG ATGGAACGAA CATTTATTAA CCCCTTGGTA AAATTTTACA AAATTAAGCA 60 CAAATAGGAG AGTGCTTTTG TCGGAAACTT TACAGCAATA TCTAAGGGAG AATTCCCTTC 16911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATAGGAG AGTGCTTTTG TCGGAAACTT TACAGCAATA TCTAAGGGAG AATTCCCTTC 120 CGCCATCTTA AGAGTGTTTG TGTACATGGA GGGAATTGAA TAGCCTTTCT TTTTCTGGCA 16971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCATCTTA AGAGTGTTTG TGTACATGGA GGGAATTGAA TAGCCTTTCT TTTTCTGGCA 180 TTTTGGAGAT AAGTAGATCC GTTGGGATAG CGGTTGTGAT GCAATAGTTG TTGCTATATT 17031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGGAGAT AAGTAGATCC GTTGGGATAG CGGTTGTGAT GCAATAGTTG TTGCTATATT 240 GGTTCCATTG AGTATCAAGT CTTCTGGAGT TAAATGGGTG AATGTGCTAT TGCTGACGTC 17091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCCATTG AGTATCAAGT CTTCTGGAGT TAAATGGGTG AATGTGCTAT TGCTGACGTC 300 CTACTTGCTG CTATGCCACG CACCGATATC ACTCATACTG GAAAGATAAA ATAAAATGAA 17151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTTGCTG CTATGCCACG CACCGATATC ACTCATACTG GAAAGATAAA ATAAAATGAA 360 ATAGAAACCA AAAGGCAAAA AATGGAAGAC AGATTGATAT ATATGAACTG CTATATATTC 17211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAAACCA AAAGGCAAAA AATGGAAGAC AGATTGATAT ATATGAACTG CTATATATTC 420 ATTCTTTCTT GTTCTTGTGC AGACTACAAA ATTTGGGAGC TCTAGAATGG GATAAAGTAG 17271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTTTCTT GTTCTTGTGC AGACTACAAA ATTTGGGAGC TCTAGAATGG GATAAAGTAG 480 TGCACGGACA TCAGGGCTGG AGGCTTTTCA CTTGTATCTG GTTACATGCT 17321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACGGACA TCAGGGCTGG AGGCTTTTCA CTTGTATCTG GTTACATGCT 530 hqPGS_C08HBa0197J17.1+_SGN-E275263+ (16792 17321) ******************************************************************************** EST sequence 20 +strand 579 n (File: SGN-E296903+) 1 GGCAGTGTTC TTTCTTGCCT TTTCATTCAA GGTAGCATCT CTGTTGGAGC TTCTGGTGCT 61 CTATTTGGAC TTCTGGGAGC AATGTTATCG GAGCTTCTTA CTAACTGGAG TATATATACC 121 AATAAGGCTG CAGCTCTTAT CACTCTCATT ATCATCATCG CGATTAACTT AGCTGTTGGT 181 CTTCTTCCTC ATGTCGATAA CTATGCCCAT ATTGGAGGTT TCATGGGTGG TTTTCTTCTT 241 GGCTTTGTTC TGCTACTACG ACCTCAGTTT GGTTGGCTCG AAAGGCAACA TCTTCCAGCT 301 GAAGGTCGTC TCAAGTCCAA GTTCAAAGCT TACCAATACG TCCTCCTGCT GATTGCCTCG 361 ATTTTGTTGA TTGTCGGATT CACTGTGGGA TTGGTGATGT TATTTAGAGG TGTGAAGGCA 421 AATGAGCATT GCGATTGGTG TCGATATTTA AGCTGTTTGC GTACATCAAG ATGGAACTGT 481 GAAAATTAAC TGAAGAGCTT TATGTAATTC TGTCCTCCTT TTTACATTAG ACCAAAAAAA 541 AAAAAACATA TAGTTACGTA TATTACTTTT ATATGTATA Predicted gene structure (within gDNA segment 17162 to 19450): Exon 1 17762 17887 ( 126 n); cDNA 1 126 ( 126 n); score: 1.000 Intron 1 17888 18011 ( 124 n); Pd: 0.987 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 18012 18262 ( 251 n); cDNA 127 377 ( 251 n); score: 1.000 Intron 2 18263 18638 ( 376 n); Pd: 0.866 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 18639 18840 ( 202 n); cDNA 378 579 ( 202 n); score: 0.995 MATCH C08HBa0197J17.1+ SGN-E296903+ 0.998 579 1.000 C PGS_C08HBa0197J17.1+_SGN-E296903+ (17762 17887,18012 18262,18639 18840) Alignment (genomic DNA sequence = upper lines): GGCAGTGTTC TTTCTTGCCT TTTCATTCAA GGTAGCATCT CTGTTGGAGC TTCTGGTGCT 17821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGTGTTC TTTCTTGCCT TTTCATTCAA GGTAGCATCT CTGTTGGAGC TTCTGGTGCT 60 CTATTTGGAC TTCTGGGAGC AATGTTATCG GAGCTTCTTA CTAACTGGAG TATATATACC 17881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTTGGAC TTCTGGGAGC AATGTTATCG GAGCTTCTTA CTAACTGGAG TATATATACC 120 AATAAGGTAT AAACCCTGCT ATTCTACTGT TATTATTTGT GTTCTTTCCC CTGTTGAGGA 17941 |||||| AATAAG.... .......... .......... .......... .......... .......... 126 GGTTATTCGT TTTATTTTAT AACACGTTCT AAGTACTTAA TTCCGGTACT AATTAATCTC 18001 .......... .......... .......... .......... .......... .......... 126 ATTTATACAG GCTGCAGCTC TTATCACTCT CATTATCATC ATCGCGATTA ACTTAGCTGT 18061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCTGCAGCTC TTATCACTCT CATTATCATC ATCGCGATTA ACTTAGCTGT 176 TGGTCTTCTT CCTCATGTCG ATAACTATGC CCATATTGGA GGTTTCATGG GTGGTTTTCT 18121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTTCTT CCTCATGTCG ATAACTATGC CCATATTGGA GGTTTCATGG GTGGTTTTCT 236 TCTTGGCTTT GTTCTGCTAC TACGACCTCA GTTTGGTTGG CTCGAAAGGC AACATCTTCC 18181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGGCTTT GTTCTGCTAC TACGACCTCA GTTTGGTTGG CTCGAAAGGC AACATCTTCC 296 AGCTGAAGGT CGTCTCAAGT CCAAGTTCAA AGCTTACCAA TACGTCCTCC TGCTGATTGC 18241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGAAGGT CGTCTCAAGT CCAAGTTCAA AGCTTACCAA TACGTCCTCC TGCTGATTGC 356 CTCGATTTTG TTGATTGTCG GGTAAGCTCT CTCTCTGCTA CGCCTAATCC TACATTTGCC 18301 |||||||||| |||||||||| | CTCGATTTTG TTGATTGTCG G......... .......... .......... .......... 377 TTACAGCAGC GTCTAGAAAA TAAGTTAGAA CGGTTGGTAA CTTTTTCCTT TTTTTAGCTC 18361 .......... .......... .......... .......... .......... .......... 377 AGATTAAATT ATTCGTCGAT CAGGATCAGA CGTTGAGTAT ACTAACTATG CTCTCTGTAT 18421 .......... .......... .......... .......... .......... .......... 377 AGAGAGACGG ATTTAGAATT CTAAGTCAAA ATTAGTGTTA AGAACATGTC ACCCACTACT 18481 .......... .......... .......... .......... .......... .......... 377 CGTTTGTAAC TATGAGTGTT GACTCACTAT AAATATTTAT ATCAACTAGT TGAGATCACG 18541 .......... .......... .......... .......... .......... .......... 377 CTATATAAAA TCTTGTGTAT ATATATATAT ATGTTAGAAG GATTTAAGGT CATACATCGT 18601 .......... .......... .......... .......... .......... .......... 377 CAGTGTATAA TTTAATTTTC GTTGTAAAAA TGTACAGATT CACTGTGGGA TTGGTGATGT 18661 ||| |||||||||| |||||||||| .......... .......... .......... .......ATT CACTGTGGGA TTGGTGATGT 400 TATTTAGAGG TGTGAAGGCA AATGAGCATT GCGATTGGTG TCGTTATTTA AGCTGTTTGC 18721 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TATTTAGAGG TGTGAAGGCA AATGAGCATT GCGATTGGTG TCGATATTTA AGCTGTTTGC 460 GTACATCAAG ATGGAACTGT GAAAATTAAC TGAAGAGCTT TATGTAATTC TGTCCTCCTT 18781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACATCAAG ATGGAACTGT GAAAATTAAC TGAAGAGCTT TATGTAATTC TGTCCTCCTT 520 TTTACATTAG ACCAAAAAAA AAAAAACATA TAGTTACGTA TATTACTTTT ATATGTATA 18840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTACATTAG ACCAAAAAAA AAAAAACATA TAGTTACGTA TATTACTTTT ATATGTATA 579 hqPGS_C08HBa0197J17.1+_SGN-E296903+ (17762 17887,18012 18262,18639 18840) ******************************************************************************** EST sequence 140 -strand 679 n (File: SGN-E368815-) 1 TTTTCATTCA AGGTAGCATC TCTGTTGGAG CTTCTGGTGC TCTATTTGGA CTTCTGGGAG 61 CAATGTTATC GGAGCTTCTT ACTAACTGGA GTATATATAC CAATAAGGCT GCAGCTCTTA 121 TCACTCTCAT TATCATCATC GCGATTAACT TAGCTGTTGG TCTTCTTCCT CATGTCGATA 181 ACTATGCCCA TATTGGAGGT TTCATGGGTG GTTTTCTTCT TGGCTTTGTT CTGCTACTAC 241 GACCTCAGTT TGGTTGGCTC GAAAGGCAAC ATCTTCCAGC TGAAGGTCGT CTCAAGTCCA 301 AGTTCAAAGC TTACCAATAC GTCCTCCTGC TGATTGCCTC GATTTTGTTG ATTGTCGGAT 361 TCACTGTGGG ATTGGTGATG TTATTTAGAG GTGTGAAGGC AAATGAGCAT TGCGATTGGT 421 GTCGTTATTT AAGCTGTTTG CGTACATCAA GATGGAACTG TGAAAATTAA CTGAAGAGCT 481 TTATGTAATT CTGTCCTCCT TTTTACATTA GACCAAAAAA AAAAAAACAT ATAGTTACGT 541 ATATTACTTT TATATGTATA GTGATTGTTG GTTTTGTAAT TTGTGGTATG GATCATATAT 601 TGTAAATCTG TTATACTATT TGCATTCGAT CTATATTCTT TATGTTCAGA AAGGTAACAA 661 AAATATACGA AAAAAAAAA Predicted gene structure (within gDNA segment 17171 to 19622): Exon 1 17781 17887 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 17888 18011 ( 124 n); Pd: 0.987 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 18012 18262 ( 251 n); cDNA 108 358 ( 251 n); score: 1.000 Intron 2 18263 18638 ( 376 n); Pd: 0.866 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 18639 18957 ( 319 n); cDNA 359 677 ( 319 n); score: 0.997 MATCH C08HBa0197J17.1+ SGN-E368815- 0.999 677 0.997 C PGS_C08HBa0197J17.1+_SGN-E368815- (17781 17887,18012 18262,18639 18957) Alignment (genomic DNA sequence = upper lines): TTTTCATTCA AGGTAGCATC TCTGTTGGAG CTTCTGGTGC TCTATTTGGA CTTCTGGGAG 17840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCATTCA AGGTAGCATC TCTGTTGGAG CTTCTGGTGC TCTATTTGGA CTTCTGGGAG 60 CAATGTTATC GGAGCTTCTT ACTAACTGGA GTATATATAC CAATAAGGTA TAAACCCTGC 17900 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATGTTATC GGAGCTTCTT ACTAACTGGA GTATATATAC CAATAAG... .......... 107 TATTCTACTG TTATTATTTG TGTTCTTTCC CCTGTTGAGG AGGTTATTCG TTTTATTTTA 17960 .......... .......... .......... .......... .......... .......... 107 TAACACGTTC TAAGTACTTA ATTCCGGTAC TAATTAATCT CATTTATACA GGCTGCAGCT 18020 ||||||||| .......... .......... .......... .......... .......... .GCTGCAGCT 116 CTTATCACTC TCATTATCAT CATCGCGATT AACTTAGCTG TTGGTCTTCT TCCTCATGTC 18080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATCACTC TCATTATCAT CATCGCGATT AACTTAGCTG TTGGTCTTCT TCCTCATGTC 176 GATAACTATG CCCATATTGG AGGTTTCATG GGTGGTTTTC TTCTTGGCTT TGTTCTGCTA 18140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTATG CCCATATTGG AGGTTTCATG GGTGGTTTTC TTCTTGGCTT TGTTCTGCTA 236 CTACGACCTC AGTTTGGTTG GCTCGAAAGG CAACATCTTC CAGCTGAAGG TCGTCTCAAG 18200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACGACCTC AGTTTGGTTG GCTCGAAAGG CAACATCTTC CAGCTGAAGG TCGTCTCAAG 296 TCCAAGTTCA AAGCTTACCA ATACGTCCTC CTGCTGATTG CCTCGATTTT GTTGATTGTC 18260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGTTCA AAGCTTACCA ATACGTCCTC CTGCTGATTG CCTCGATTTT GTTGATTGTC 356 GGGTAAGCTC TCTCTCTGCT ACGCCTAATC CTACATTTGC CTTACAGCAG CGTCTAGAAA 18320 || GG........ .......... .......... .......... .......... .......... 358 ATAAGTTAGA ACGGTTGGTA ACTTTTTCCT TTTTTTAGCT CAGATTAAAT TATTCGTCGA 18380 .......... .......... .......... .......... .......... .......... 358 TCAGGATCAG ACGTTGAGTA TACTAACTAT GCTCTCTGTA TAGAGAGACG GATTTAGAAT 18440 .......... .......... .......... .......... .......... .......... 358 TCTAAGTCAA AATTAGTGTT AAGAACATGT CACCCACTAC TCGTTTGTAA CTATGAGTGT 18500 .......... .......... .......... .......... .......... .......... 358 TGACTCACTA TAAATATTTA TATCAACTAG TTGAGATCAC GCTATATAAA ATCTTGTGTA 18560 .......... .......... .......... .......... .......... .......... 358 TATATATATA TATGTTAGAA GGATTTAAGG TCATACATCG TCAGTGTATA ATTTAATTTT 18620 .......... .......... .......... .......... .......... .......... 358 CGTTGTAAAA ATGTACAGAT TCACTGTGGG ATTGGTGATG TTATTTAGAG GTGTGAAGGC 18680 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT TCACTGTGGG ATTGGTGATG TTATTTAGAG GTGTGAAGGC 400 AAATGAGCAT TGCGATTGGT GTCGTTATTT AAGCTGTTTG CGTACATCAA GATGGAACTG 18740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGAGCAT TGCGATTGGT GTCGTTATTT AAGCTGTTTG CGTACATCAA GATGGAACTG 460 TGAAAATTAA CTGAAGAGCT TTATGTAATT CTGTCCTCCT TTTTACATTA GACCAAAAAA 18800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAATTAA CTGAAGAGCT TTATGTAATT CTGTCCTCCT TTTTACATTA GACCAAAAAA 520 AAAAAAACAT ATAGTTACGT ATATTACTTT TATATGTATA GTGATTGTTG GTTTTGTAAT 18860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAACAT ATAGTTACGT ATATTACTTT TATATGTATA GTGATTGTTG GTTTTGTAAT 580 TTGTGGTATG GATCATATAT TGTAAATCTG TTATACTATT TGCATTCGAT CTATATTCTT 18920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTATG GATCATATAT TGTAAATCTG TTATACTATT TGCATTCGAT CTATATTCTT 640 TATGTTCAGA AAGGTAACAA AAATATACGA AAGAAAA 18957 |||||||||| |||||||||| |||||||||| || |||| TATGTTCAGA AAGGTAACAA AAATATACGA AAAAAAA 677 hqPGS_C08HBa0197J17.1+_SGN-E368815- (17781 17887,18012 18262,18639 18957) ******************************************************************************** EST sequence 73 -strand 526 n (File: SGN-E225393-) 1 TGCAGCTCTT ATCACTCTCA TTATCATCAT CGCGATTAAC TTAGCTGTTG GTCTTCTTCC 61 TCATGTCGAT AACTATGCCC ATATTGGAGG TTTCATGGGT GGTTTTCTTC TAGGCTTTGT 121 TCTGCTACTA CGACCTCAGT TTGGTTGGCT CGAAAGGCAA CATCTTCCAG CTGAAGGTCG 181 TCTCAAGTCC AAGTTCAAAG CTTACCAAAA CGTCCTCCTG CTGATTGCCT CGATTTTGTT 241 GATTGTCGGA TTCACTGTGG GATTGGTGAT GTTATTTAGA GGTGTGAAGG CAAATGAGCA 301 TTGCGATTGG TGTCGTTATT TAAGCTGTTT GCGTACATCA AGATGGAACT GTGAAAATTA 361 ACTCAAGAGC TTTATGTAAT TCTGTCCTCC TTTTTACATT AGACCAAAAA AAAAAAAACA 421 TATAGTTACG TATATTACTT TTATATGTAT AGTGATTGTT GGTTTTGTAA TATGTGGTAT 481 GGATCATATA TTGTAGATCT GTTATTCTAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 17404 to 19794): Exon 1 18014 18262 ( 249 n); cDNA 1 249 ( 249 n); score: 0.992 Intron 1 18263 18638 ( 376 n); Pd: 0.866 (s: 0.98), Pa: 0.990 (s: 1.00) Exon 2 18639 18897 ( 259 n); cDNA 250 508 ( 259 n); score: 0.985 Intron 2 18898 18929 ( 32 n); Pd: 0.000 (s: 0.94), Pa: 0.980 (s: 0) Exon 3 18930 18943 ( 14 n); cDNA 509 522 ( 14 n); score: 0.714 MATCH C08HBa0197J17.1+ SGN-E225393- 0.988 522 0.992 C PGS_C08HBa0197J17.1+_SGN-E225393- (18014 18262,18639 18897,18930 18943) Alignment (genomic DNA sequence = upper lines): TGCAGCTCTT ATCACTCTCA TTATCATCAT CGCGATTAAC TTAGCTGTTG GTCTTCTTCC 18073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTCTT ATCACTCTCA TTATCATCAT CGCGATTAAC TTAGCTGTTG GTCTTCTTCC 60 TCATGTCGAT AACTATGCCC ATATTGGAGG TTTCATGGGT GGTTTTCTTC TTGGCTTTGT 18133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TCATGTCGAT AACTATGCCC ATATTGGAGG TTTCATGGGT GGTTTTCTTC TAGGCTTTGT 120 TCTGCTACTA CGACCTCAGT TTGGTTGGCT CGAAAGGCAA CATCTTCCAG CTGAAGGTCG 18193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTACTA CGACCTCAGT TTGGTTGGCT CGAAAGGCAA CATCTTCCAG CTGAAGGTCG 180 TCTCAAGTCC AAGTTCAAAG CTTACCAATA CGTCCTCCTG CTGATTGCCT CGATTTTGTT 18253 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TCTCAAGTCC AAGTTCAAAG CTTACCAAAA CGTCCTCCTG CTGATTGCCT CGATTTTGTT 240 GATTGTCGGG TAAGCTCTCT CTCTGCTACG CCTAATCCTA CATTTGCCTT ACAGCAGCGT 18313 ||||||||| GATTGTCGG. .......... .......... .......... .......... .......... 249 CTAGAAAATA AGTTAGAACG GTTGGTAACT TTTTCCTTTT TTTAGCTCAG ATTAAATTAT 18373 .......... .......... .......... .......... .......... .......... 249 TCGTCGATCA GGATCAGACG TTGAGTATAC TAACTATGCT CTCTGTATAG AGAGACGGAT 18433 .......... .......... .......... .......... .......... .......... 249 TTAGAATTCT AAGTCAAAAT TAGTGTTAAG AACATGTCAC CCACTACTCG TTTGTAACTA 18493 .......... .......... .......... .......... .......... .......... 249 TGAGTGTTGA CTCACTATAA ATATTTATAT CAACTAGTTG AGATCACGCT ATATAAAATC 18553 .......... .......... .......... .......... .......... .......... 249 TTGTGTATAT ATATATATAT GTTAGAAGGA TTTAAGGTCA TACATCGTCA GTGTATAATT 18613 .......... .......... .......... .......... .......... .......... 249 TAATTTTCGT TGTAAAAATG TACAGATTCA CTGTGGGATT GGTGATGTTA TTTAGAGGTG 18673 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATTCA CTGTGGGATT GGTGATGTTA TTTAGAGGTG 284 TGAAGGCAAA TGAGCATTGC GATTGGTGTC GTTATTTAAG CTGTTTGCGT ACATCAAGAT 18733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGCAAA TGAGCATTGC GATTGGTGTC GTTATTTAAG CTGTTTGCGT ACATCAAGAT 344 GGAACTGTGA AAATTAACTG AAGAGCTTTA TGTAATTCTG TCCTCCTTTT TACATTAGAC 18793 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACTGTGA AAATTAACTC AAGAGCTTTA TGTAATTCTG TCCTCCTTTT TACATTAGAC 404 CAAAAAAAAA AAAACATATA GTTACGTATA TTACTTTTAT ATGTATAGTG ATTGTTGGTT 18853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAAAAA AAAACATATA GTTACGTATA TTACTTTTAT ATGTATAGTG ATTGTTGGTT 464 TTGTAATTTG TGGTATGGAT CATATATTGT AAATCTGTTA TACTATTTGC ATTCGATCTA 18913 ||||||| || |||||||||| |||||||||| | |||||||| | || TTGTAATATG TGGTATGGAT CATATATTGT AGATCTGTTA TTCT...... .......... 508 TATTCTTTAT GTTCAGAAAG GTAACAAAAA 18943 ||| || ||||| .......... ......AAAA AAAAAAAAAA 522 hqPGS_C08HBa0197J17.1+_SGN-E225393- (18014 18262,18639 18897,18930 18943) ******************************************************************************** EST sequence 136 -strand 552 n (File: SGN-E299685-) 1 CTTATCACTC TCATTATCAT CATCGCGATT AACTTAGCTG TTGGTCTTCT TCCTCATGTC 61 GATAACTATG CCCATATTGG AGGTTTCATG GGTGGTTTTC TTCTTGGCTT TGTTCTGCTA 121 CTACGACCTC AGTTTGGTTG GCTCGAAAGG CAACATCTTC CAGCTGAAGG TCGTCTCAAG 181 TCCAAGTTCA AAGCTTACCA ATACGTCCTC CTGCTGATTG CCTCGATTTT GTTGATTGTC 241 GGATTCACTG TGGGATTGGT GATGTTATTT AGAGGTGTGA AGGCAAATGA GCATTGCGAT 301 TGGTGTCGTT ATTTAAGCTG TTTGCGTACA TCAAGATGGA ACTGTGAAAA TTAACTGAAG 361 AGCTTTATGT AATTCTGTCC TCCTTTTTAC ATTAGACCAA AAAAAAAAAA ACATATAGTT 421 ACGTATATTA CTTTTATATG TATAGTGATT GTTGGTTTTG TAATTTGTGG TATGGATCAT 481 ATATTGTAAA TCTGTTATAA TATTTGCATT CGATCTATAT TCTTTATGTT CAGAAAGGTA 541 CCAAAAGGAA AA Predicted gene structure (within gDNA segment 17411 to 19656): Exon 1 18021 18262 ( 242 n); cDNA 1 242 ( 242 n); score: 1.000 Intron 1 18263 18638 ( 376 n); Pd: 0.866 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 18639 18942 ( 304 n); cDNA 243 546 ( 304 n); score: 0.993 MATCH C08HBa0197J17.1+ SGN-E299685- 0.996 546 0.989 C PGS_C08HBa0197J17.1+_SGN-E299685- (18021 18262,18639 18942) Alignment (genomic DNA sequence = upper lines): CTTATCACTC TCATTATCAT CATCGCGATT AACTTAGCTG TTGGTCTTCT TCCTCATGTC 18080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATCACTC TCATTATCAT CATCGCGATT AACTTAGCTG TTGGTCTTCT TCCTCATGTC 60 GATAACTATG CCCATATTGG AGGTTTCATG GGTGGTTTTC TTCTTGGCTT TGTTCTGCTA 18140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTATG CCCATATTGG AGGTTTCATG GGTGGTTTTC TTCTTGGCTT TGTTCTGCTA 120 CTACGACCTC AGTTTGGTTG GCTCGAAAGG CAACATCTTC CAGCTGAAGG TCGTCTCAAG 18200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACGACCTC AGTTTGGTTG GCTCGAAAGG CAACATCTTC CAGCTGAAGG TCGTCTCAAG 180 TCCAAGTTCA AAGCTTACCA ATACGTCCTC CTGCTGATTG CCTCGATTTT GTTGATTGTC 18260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGTTCA AAGCTTACCA ATACGTCCTC CTGCTGATTG CCTCGATTTT GTTGATTGTC 240 GGGTAAGCTC TCTCTCTGCT ACGCCTAATC CTACATTTGC CTTACAGCAG CGTCTAGAAA 18320 || GG........ .......... .......... .......... .......... .......... 242 ATAAGTTAGA ACGGTTGGTA ACTTTTTCCT TTTTTTAGCT CAGATTAAAT TATTCGTCGA 18380 .......... .......... .......... .......... .......... .......... 242 TCAGGATCAG ACGTTGAGTA TACTAACTAT GCTCTCTGTA TAGAGAGACG GATTTAGAAT 18440 .......... .......... .......... .......... .......... .......... 242 TCTAAGTCAA AATTAGTGTT AAGAACATGT CACCCACTAC TCGTTTGTAA CTATGAGTGT 18500 .......... .......... .......... .......... .......... .......... 242 TGACTCACTA TAAATATTTA TATCAACTAG TTGAGATCAC GCTATATAAA ATCTTGTGTA 18560 .......... .......... .......... .......... .......... .......... 242 TATATATATA TATGTTAGAA GGATTTAAGG TCATACATCG TCAGTGTATA ATTTAATTTT 18620 .......... .......... .......... .......... .......... .......... 242 CGTTGTAAAA ATGTACAGAT TCACTGTGGG ATTGGTGATG TTATTTAGAG GTGTGAAGGC 18680 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT TCACTGTGGG ATTGGTGATG TTATTTAGAG GTGTGAAGGC 284 AAATGAGCAT TGCGATTGGT GTCGTTATTT AAGCTGTTTG CGTACATCAA GATGGAACTG 18740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGAGCAT TGCGATTGGT GTCGTTATTT AAGCTGTTTG CGTACATCAA GATGGAACTG 344 TGAAAATTAA CTGAAGAGCT TTATGTAATT CTGTCCTCCT TTTTACATTA GACCAAAAAA 18800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAATTAA CTGAAGAGCT TTATGTAATT CTGTCCTCCT TTTTACATTA GACCAAAAAA 404 AAAAAAACAT ATAGTTACGT ATATTACTTT TATATGTATA GTGATTGTTG GTTTTGTAAT 18860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAACAT ATAGTTACGT ATATTACTTT TATATGTATA GTGATTGTTG GTTTTGTAAT 464 TTGTGGTATG GATCATATAT TGTAAATCTG TTATACTATT TGCATTCGAT CTATATTCTT 18920 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTGTGGTATG GATCATATAT TGTAAATCTG TTATAATATT TGCATTCGAT CTATATTCTT 524 TATGTTCAGA AAGGTAACAA AA 18942 |||||||||| |||||| ||| || TATGTTCAGA AAGGTACCAA AA 546 hqPGS_C08HBa0197J17.1+_SGN-E299685- (18021 18262,18639 18942) ******************************************************************************** EST sequence 74 -strand 385 n (File: SGN-E225836-) 1 TGGTTGGCTC GAAAGGCAAC ATCTTCCAGC TGAAGGTCGT CTCAAGTCCA AGTTCAAAGC 61 TTACCAATAC GTCCTCCTGC TGATTGCCTC GATTTTGTTG ATTGTCGGAT TCACTGTGGG 121 ATTGGTGATG TTATTTAGAG GTGTGAAGGC AAATGAGCAT TGCGATTGGT GTCGTTATTT 181 AAGCTGTTTG CGTACATCAA AATGGAACTG TGAAAATTAA CTGAAGAGCT TTATGTAATT 241 CTGTCCTCCT TTTTACATTA GACCAAAAAA AAAAAAACAT ATAGTTACGT ATATTACTTT 301 TATATGTATA GTGATTGTTG GTTTTGTAAT TTGTGGTATG GATCATATAT TGTAAATCTG 361 TTACCCTAAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 17545 to 19713): Exon 1 18155 18262 ( 108 n); cDNA 1 108 ( 108 n); score: 1.000 Intron 1 18263 18638 ( 376 n); Pd: 0.866 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 18639 18897 ( 259 n); cDNA 109 367 ( 259 n); score: 0.988 Intron 2 18898 18929 ( 32 n); Pd: 0.000 (s: 0.96), Pa: 0.980 (s: 0) Exon 3 18930 18943 ( 14 n); cDNA 368 381 ( 14 n); score: 0.714 MATCH C08HBa0197J17.1+ SGN-E225836- 0.992 381 0.990 C PGS_C08HBa0197J17.1+_SGN-E225836- (18155 18262,18639 18897,18930 18943) Alignment (genomic DNA sequence = upper lines): TGGTTGGCTC GAAAGGCAAC ATCTTCCAGC TGAAGGTCGT CTCAAGTCCA AGTTCAAAGC 18214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGGCTC GAAAGGCAAC ATCTTCCAGC TGAAGGTCGT CTCAAGTCCA AGTTCAAAGC 60 TTACCAATAC GTCCTCCTGC TGATTGCCTC GATTTTGTTG ATTGTCGGGT AAGCTCTCTC 18274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTACCAATAC GTCCTCCTGC TGATTGCCTC GATTTTGTTG ATTGTCGG.. .......... 108 TCTGCTACGC CTAATCCTAC ATTTGCCTTA CAGCAGCGTC TAGAAAATAA GTTAGAACGG 18334 .......... .......... .......... .......... .......... .......... 108 TTGGTAACTT TTTCCTTTTT TTAGCTCAGA TTAAATTATT CGTCGATCAG GATCAGACGT 18394 .......... .......... .......... .......... .......... .......... 108 TGAGTATACT AACTATGCTC TCTGTATAGA GAGACGGATT TAGAATTCTA AGTCAAAATT 18454 .......... .......... .......... .......... .......... .......... 108 AGTGTTAAGA ACATGTCACC CACTACTCGT TTGTAACTAT GAGTGTTGAC TCACTATAAA 18514 .......... .......... .......... .......... .......... .......... 108 TATTTATATC AACTAGTTGA GATCACGCTA TATAAAATCT TGTGTATATA TATATATATG 18574 .......... .......... .......... .......... .......... .......... 108 TTAGAAGGAT TTAAGGTCAT ACATCGTCAG TGTATAATTT AATTTTCGTT GTAAAAATGT 18634 .......... .......... .......... .......... .......... .......... 108 ACAGATTCAC TGTGGGATTG GTGATGTTAT TTAGAGGTGT GAAGGCAAAT GAGCATTGCG 18694 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATTCAC TGTGGGATTG GTGATGTTAT TTAGAGGTGT GAAGGCAAAT GAGCATTGCG 164 ATTGGTGTCG TTATTTAAGC TGTTTGCGTA CATCAAGATG GAACTGTGAA AATTAACTGA 18754 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ATTGGTGTCG TTATTTAAGC TGTTTGCGTA CATCAAAATG GAACTGTGAA AATTAACTGA 224 AGAGCTTTAT GTAATTCTGT CCTCCTTTTT ACATTAGACC AAAAAAAAAA AAACATATAG 18814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCTTTAT GTAATTCTGT CCTCCTTTTT ACATTAGACC AAAAAAAAAA AAACATATAG 284 TTACGTATAT TACTTTTATA TGTATAGTGA TTGTTGGTTT TGTAATTTGT GGTATGGATC 18874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACGTATAT TACTTTTATA TGTATAGTGA TTGTTGGTTT TGTAATTTGT GGTATGGATC 344 ATATATTGTA AATCTGTTAT ACTATTTGCA TTCGATCTAT ATTCTTTATG TTCAGAAAGG 18934 |||||||||| ||||||||| || ||| ATATATTGTA AATCTGTTAC CCT....... .......... .......... .....AAAAA 372 TAACAAAAA 18943 || ||||| AAAAAAAAA 381 hqPGS_C08HBa0197J17.1+_SGN-E225836- (18155 18262,18639 18897,18930 18943) ******************************************************************************** EST sequence 87 +strand 627 n (File: SGN-E553660+) 1 CATCATCATA ATAACAAAAA AAGAGAAGTA TATAATTAAA AATCATGGGT AAAACTATGA 61 TAGTTGGAGC CATTTCTTTA GCCATCCTTT TCATGGCAGC CACAGTTTGT AGCTCACGTA 121 TCATGACCAT CACCATTGCT GAAGATGCTC TTAACCCTCA AACTCAAAGC TGCCAGCAGC 181 AATTTCAACA GGCACAGCAG CTACGTTCAT GCCAGCAGTT TCTAAGGCAG AGGAGCCAGC 241 AGTACGAGGA CCAACAGATT CCTCGTGATG TTCAACAATG TTGCAATCAG CTTGAACAGA 301 TACAAGACCC ACAATGCCGT TGCGAGGGAC TCATGAAAGT GGTTCAACAA GAGGAACAAA 361 CCGGGAAAGT TCAAGGAAGA CAAAGGCAAC AGATGCTTCA AACTGCAGAG AATTTGCCTG 421 GTTTATGTAG ACTTAGCCCA CAACGATGTG AGATCCAAAC TGTTCGCAGC TTCTTTTAAT 481 TTGCAAAAAT TATTTGTAAG CCTGCGTTCG CTTATAAATA AATAAATGAT CTAGTTGTTG 541 TAAAACTCGA TCGTAGTAAT AAAATAAAAT CACACCTTCT GGTGTGATTT TTCTCTCNNA 601 AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 22445 to 19748): Exon 1 21845 21655 ( 191 n); cDNA 1 191 ( 191 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20658 ( 406 n); cDNA 192 597 ( 406 n); score: 1.000 PPA cDNA 600 627 MATCH C08HBa0197J17.1- SGN-E553660+ 1.000 597 0.952 C PGS_C08HBa0197J17.1-_SGN-E553660+ (21845 21655,21063 20658) Alignment (genomic DNA sequence = upper lines): CATCATCATA ATAACAAAAA AAGAGAAGTA TATAATTAAA AATCATGGGT AAAACTATGA 21786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCATCATA ATAACAAAAA AAGAGAAGTA TATAATTAAA AATCATGGGT AAAACTATGA 60 TAGTTGGAGC CATTTCTTTA GCCATCCTTT TCATGGCAGC CACAGTTTGT AGCTCACGTA 21726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTGGAGC CATTTCTTTA GCCATCCTTT TCATGGCAGC CACAGTTTGT AGCTCACGTA 120 TCATGACCAT CACCATTGCT GAAGATGCTC TTAACCCTCA AACTCAAAGC TGCCAGCAGC 21666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGACCAT CACCATTGCT GAAGATGCTC TTAACCCTCA AACTCAAAGC TGCCAGCAGC 180 AATTTCAACA GGTTTCGCTT TCATTTTATC TAATTCCCCC CCCCCCCCCC CCCCTTTTAC 21606 |||||||||| | AATTTCAACA G......... .......... .......... .......... .......... 191 GCTTTTTGAT TTATGTGACA TTTTTCATTT TTTTCCTTCT TTTTTAATTA ATTTTTTTTA 21546 .......... .......... .......... .......... .......... .......... 191 GTTATGAAAT TCAAGTAAAT CTTTTAATTC TAATTTTTTA TATATCTTTT ACAAATATTT 21486 .......... .......... .......... .......... .......... .......... 191 TAAAGGCATA TTATATAAAC ATGACCTTTA ACTTGATTTC AACAGATAAC TATGCATTTT 21426 .......... .......... .......... .......... .......... .......... 191 AATTTTAAGT CTATAAATAA ACACTTAAAT TTTTATAAAA TTAAATAAAT AGACAAAAAT 21366 .......... .......... .......... .......... .......... .......... 191 GTCCTTCGTT CATGGCATAA TACAGTTAGG ATGTTATGTT AATTGTCATC TAGGATGTCA 21306 .......... .......... .......... .......... .......... .......... 191 CGCCGAACGA ATGTGTTTAT TGTTCAATTT TATACAAATT TAAGTTTGTA TTTATACAAA 21246 .......... .......... .......... .......... .......... .......... 191 TCCAAAGTTA AAGATTGACA GTACAAGTTT AAGTACCTCT ATATATTTCA ATTCACAAAA 21186 .......... .......... .......... .......... .......... .......... 191 TTTAAAGATT TCATGCACAT ATTCTGATAA ATTTAAACCG CTTGATCTTT GAAAAAAGAA 21126 .......... .......... .......... .......... .......... .......... 191 AAGTATCACG TAAATTGGGA TTACGATATG GTATGTTTTT GCTTATATAA CAAAAAATAC 21066 .......... .......... .......... .......... .......... .......... 191 AGGCACAGCA GCTACGTTCA TGCCAGCAGT TTCTAAGGCA GAGGAGCCAG CAGTACGAGG 21006 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GCACAGCA GCTACGTTCA TGCCAGCAGT TTCTAAGGCA GAGGAGCCAG CAGTACGAGG 249 ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 20946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 309 CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 20886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 369 TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 20826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 429 GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 20766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 489 TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 20706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 549 ATCGTAGTAA TAAAATAAAA TCACACCTTC TGGTGTGATT TTTCTCTC 20658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATCGTAGTAA TAAAATAAAA TCACACCTTC TGGTGTGATT TTTCTCTC 597 hqPGS_C08HBa0197J17.1-_SGN-E553660+ (21845 21655,21063 20658) ******************************************************************************** EST sequence 105 +strand 647 n (File: SGN-E555906+) 1 CATCATCATA ATAACAAAAA AAGAGAAGTA TATAATTAAA AATCATGGGT AAAACTATGA 61 TAGTTGGAGC CATTTCTTTA GCCATCCTTT TCATGGCAGC CACAGTTTGT AGCTCACGTA 121 TCATGACCAT CACCATTGCT GAAGATGCTC TTAACCCTCA AACTCAAAGC TGCCAGCAGC 181 AATTTCAACA GGCACAGCAG CTACGTTCAT GCCAGCAGTT TCTAAGGCAG AGGAGCCAGC 241 AGTACGAGGA CCAACAGATT CCTCGTGATG TTCAACAATG TTGCAATCAG CTTGAACAGA 301 TACAAGACCC ACAATGCCGT TGCGAGGGAC TCATGAAAGT GGTTCAACAA GAGGAACAAA 361 CCGGGAAAGT TCAAGGAAGA CAAAGGCAAC AGATGCTTCA AACTGCAGAG AATTTGCCTG 421 GTTTATGTAG ACTTAGCCCA CAACGATGTG AGATCCAAAC TGTTCGCAGC TTCTTTTAAT 481 TTGCAAAAAT TATTTGTAAG CCTGCGTTCG CTTATAAATA AATAAATGAT CTAGTTGTTG 541 TAAAACTCGA TCGTAGTAAT AAAATAAAAT CACACCTTCT GGTGTGATTT TTCTCTCAAA 601 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 22445 to 19557): Exon 1 21845 21655 ( 191 n); cDNA 1 191 ( 191 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20658 ( 406 n); cDNA 192 597 ( 406 n); score: 1.000 PPA cDNA 598 647 MATCH C08HBa0197J17.1- SGN-E555906+ 1.000 597 0.923 C PGS_C08HBa0197J17.1-_SGN-E555906+ (21845 21655,21063 20658) Alignment (genomic DNA sequence = upper lines): CATCATCATA ATAACAAAAA AAGAGAAGTA TATAATTAAA AATCATGGGT AAAACTATGA 21786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCATCATA ATAACAAAAA AAGAGAAGTA TATAATTAAA AATCATGGGT AAAACTATGA 60 TAGTTGGAGC CATTTCTTTA GCCATCCTTT TCATGGCAGC CACAGTTTGT AGCTCACGTA 21726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTGGAGC CATTTCTTTA GCCATCCTTT TCATGGCAGC CACAGTTTGT AGCTCACGTA 120 TCATGACCAT CACCATTGCT GAAGATGCTC TTAACCCTCA AACTCAAAGC TGCCAGCAGC 21666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGACCAT CACCATTGCT GAAGATGCTC TTAACCCTCA AACTCAAAGC TGCCAGCAGC 180 AATTTCAACA GGTTTCGCTT TCATTTTATC TAATTCCCCC CCCCCCCCCC CCCCTTTTAC 21606 |||||||||| | AATTTCAACA G......... .......... .......... .......... .......... 191 GCTTTTTGAT TTATGTGACA TTTTTCATTT TTTTCCTTCT TTTTTAATTA ATTTTTTTTA 21546 .......... .......... .......... .......... .......... .......... 191 GTTATGAAAT TCAAGTAAAT CTTTTAATTC TAATTTTTTA TATATCTTTT ACAAATATTT 21486 .......... .......... .......... .......... .......... .......... 191 TAAAGGCATA TTATATAAAC ATGACCTTTA ACTTGATTTC AACAGATAAC TATGCATTTT 21426 .......... .......... .......... .......... .......... .......... 191 AATTTTAAGT CTATAAATAA ACACTTAAAT TTTTATAAAA TTAAATAAAT AGACAAAAAT 21366 .......... .......... .......... .......... .......... .......... 191 GTCCTTCGTT CATGGCATAA TACAGTTAGG ATGTTATGTT AATTGTCATC TAGGATGTCA 21306 .......... .......... .......... .......... .......... .......... 191 CGCCGAACGA ATGTGTTTAT TGTTCAATTT TATACAAATT TAAGTTTGTA TTTATACAAA 21246 .......... .......... .......... .......... .......... .......... 191 TCCAAAGTTA AAGATTGACA GTACAAGTTT AAGTACCTCT ATATATTTCA ATTCACAAAA 21186 .......... .......... .......... .......... .......... .......... 191 TTTAAAGATT TCATGCACAT ATTCTGATAA ATTTAAACCG CTTGATCTTT GAAAAAAGAA 21126 .......... .......... .......... .......... .......... .......... 191 AAGTATCACG TAAATTGGGA TTACGATATG GTATGTTTTT GCTTATATAA CAAAAAATAC 21066 .......... .......... .......... .......... .......... .......... 191 AGGCACAGCA GCTACGTTCA TGCCAGCAGT TTCTAAGGCA GAGGAGCCAG CAGTACGAGG 21006 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GCACAGCA GCTACGTTCA TGCCAGCAGT TTCTAAGGCA GAGGAGCCAG CAGTACGAGG 249 ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 20946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 309 CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 20886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 369 TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 20826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 429 GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 20766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 489 TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 20706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 549 ATCGTAGTAA TAAAATAAAA TCACACCTTC TGGTGTGATT TTTCTCTC 20658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATCGTAGTAA TAAAATAAAA TCACACCTTC TGGTGTGATT TTTCTCTC 597 hqPGS_C08HBa0197J17.1-_SGN-E555906+ (21845 21655,21063 20658) ******************************************************************************** EST sequence 99 +strand 635 n (File: SGN-E554758+) 1 AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 61 CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 121 TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 181 AGGCACAGCA GCTACGTTCA TGCCAGCAGT TTCTAAGGCA GAGGAGCCAG CAGTACGAGG 241 ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 301 CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 361 TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 421 GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 481 TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 541 ATCGTAGTAA TAAAATAAAA TCACACCTTC TGGTGTGATT TTTCTCTCAN AAAAAAAAAA 601 AATATATAAA AAACAAAAAA CTAAAAATAA TTTAA Predicted gene structure (within gDNA segment 22436 to 19587): Exon 1 21836 21655 ( 182 n); cDNA 1 182 ( 182 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20658 ( 406 n); cDNA 183 588 ( 406 n); score: 1.000 PPA cDNA 589 602 MATCH C08HBa0197J17.1- SGN-E554758+ 1.000 588 0.926 C PGS_C08HBa0197J17.1-_SGN-E554758+ (21836 21655,21063 20658) Alignment (genomic DNA sequence = upper lines): AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 21777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 60 CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 21717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 120 TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 21657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 180 AGGTTTCGCT TTCATTTTAT CTAATTCCCC CCCCCCCCCC CCCCCTTTTA CGCTTTTTGA 21597 || AG........ .......... .......... .......... .......... .......... 182 TTTATGTGAC ATTTTTCATT TTTTTCCTTC TTTTTTAATT AATTTTTTTT AGTTATGAAA 21537 .......... .......... .......... .......... .......... .......... 182 TTCAAGTAAA TCTTTTAATT CTAATTTTTT ATATATCTTT TACAAATATT TTAAAGGCAT 21477 .......... .......... .......... .......... .......... .......... 182 ATTATATAAA CATGACCTTT AACTTGATTT CAACAGATAA CTATGCATTT TAATTTTAAG 21417 .......... .......... .......... .......... .......... .......... 182 TCTATAAATA AACACTTAAA TTTTTATAAA ATTAAATAAA TAGACAAAAA TGTCCTTCGT 21357 .......... .......... .......... .......... .......... .......... 182 TCATGGCATA ATACAGTTAG GATGTTATGT TAATTGTCAT CTAGGATGTC ACGCCGAACG 21297 .......... .......... .......... .......... .......... .......... 182 AATGTGTTTA TTGTTCAATT TTATACAAAT TTAAGTTTGT ATTTATACAA ATCCAAAGTT 21237 .......... .......... .......... .......... .......... .......... 182 AAAGATTGAC AGTACAAGTT TAAGTACCTC TATATATTTC AATTCACAAA ATTTAAAGAT 21177 .......... .......... .......... .......... .......... .......... 182 TTCATGCACA TATTCTGATA AATTTAAACC GCTTGATCTT TGAAAAAAGA AAAGTATCAC 21117 .......... .......... .......... .......... .......... .......... 182 GTAAATTGGG ATTACGATAT GGTATGTTTT TGCTTATATA ACAAAAAATA CAGGCACAGC 21057 ||||||| .......... .......... .......... .......... .......... ...GCACAGC 189 AGCTACGTTC ATGCCAGCAG TTTCTAAGGC AGAGGAGCCA GCAGTACGAG GACCAACAGA 20997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTACGTTC ATGCCAGCAG TTTCTAAGGC AGAGGAGCCA GCAGTACGAG GACCAACAGA 249 TTCCTCGTGA TGTTCAACAA TGTTGCAATC AGCTTGAACA GATACAAGAC CCACAATGCC 20937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTCGTGA TGTTCAACAA TGTTGCAATC AGCTTGAACA GATACAAGAC CCACAATGCC 309 GTTGCGAGGG ACTCATGAAA GTGGTTCAAC AAGAGGAACA AACCGGGAAA GTTCAAGGAA 20877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCGAGGG ACTCATGAAA GTGGTTCAAC AAGAGGAACA AACCGGGAAA GTTCAAGGAA 369 GACAAAGGCA ACAGATGCTT CAAACTGCAG AGAATTTGCC TGGTTTATGT AGACTTAGCC 20817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAGGCA ACAGATGCTT CAAACTGCAG AGAATTTGCC TGGTTTATGT AGACTTAGCC 429 CACAACGATG TGAGATCCAA ACTGTTCGCA GCTTCTTTTA ATTTGCAAAA ATTATTTGTA 20757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACGATG TGAGATCCAA ACTGTTCGCA GCTTCTTTTA ATTTGCAAAA ATTATTTGTA 489 AGCCTGCGTT CGCTTATAAA TAAATAAATG ATCTAGTTGT TGTAAAACTC GATCGTAGTA 20697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTGCGTT CGCTTATAAA TAAATAAATG ATCTAGTTGT TGTAAAACTC GATCGTAGTA 549 ATAAAATAAA ATCACACCTT CTGGTGTGAT TTTTCTCTC 20658 |||||||||| |||||||||| |||||||||| ||||||||| ATAAAATAAA ATCACACCTT CTGGTGTGAT TTTTCTCTC 588 hqPGS_C08HBa0197J17.1-_SGN-E554758+ (21836 21655,21063 20658) ******************************************************************************** EST sequence 101 +strand 635 n (File: SGN-E554956+) 1 AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 61 CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 121 TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 181 AGGCACAGCA GCTACGTTCA TGCCAGCAGT TTCTAAGGCA GAGGAGCCAG CAGTACGAGG 241 ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 301 CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 361 TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 421 GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 481 TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 541 ATCGTAGTAA TAAAATAAAA TCACACCTTC TGGTGTGATT TTTCTCTCAN AAAAAAAAAA 601 AAAAATAAAA AAAAATAAAA AAAAAAAAAN AAAAA Predicted gene structure (within gDNA segment 22436 to 19587): Exon 1 21836 21655 ( 182 n); cDNA 1 182 ( 182 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20658 ( 406 n); cDNA 183 588 ( 406 n); score: 1.000 PPA cDNA 589 605 MATCH C08HBa0197J17.1- SGN-E554956+ 1.000 588 0.926 C PGS_C08HBa0197J17.1-_SGN-E554956+ (21836 21655,21063 20658) Alignment (genomic DNA sequence = upper lines): AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 21777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 60 CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 21717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 120 TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 21657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 180 AGGTTTCGCT TTCATTTTAT CTAATTCCCC CCCCCCCCCC CCCCCTTTTA CGCTTTTTGA 21597 || AG........ .......... .......... .......... .......... .......... 182 TTTATGTGAC ATTTTTCATT TTTTTCCTTC TTTTTTAATT AATTTTTTTT AGTTATGAAA 21537 .......... .......... .......... .......... .......... .......... 182 TTCAAGTAAA TCTTTTAATT CTAATTTTTT ATATATCTTT TACAAATATT TTAAAGGCAT 21477 .......... .......... .......... .......... .......... .......... 182 ATTATATAAA CATGACCTTT AACTTGATTT CAACAGATAA CTATGCATTT TAATTTTAAG 21417 .......... .......... .......... .......... .......... .......... 182 TCTATAAATA AACACTTAAA TTTTTATAAA ATTAAATAAA TAGACAAAAA TGTCCTTCGT 21357 .......... .......... .......... .......... .......... .......... 182 TCATGGCATA ATACAGTTAG GATGTTATGT TAATTGTCAT CTAGGATGTC ACGCCGAACG 21297 .......... .......... .......... .......... .......... .......... 182 AATGTGTTTA TTGTTCAATT TTATACAAAT TTAAGTTTGT ATTTATACAA ATCCAAAGTT 21237 .......... .......... .......... .......... .......... .......... 182 AAAGATTGAC AGTACAAGTT TAAGTACCTC TATATATTTC AATTCACAAA ATTTAAAGAT 21177 .......... .......... .......... .......... .......... .......... 182 TTCATGCACA TATTCTGATA AATTTAAACC GCTTGATCTT TGAAAAAAGA AAAGTATCAC 21117 .......... .......... .......... .......... .......... .......... 182 GTAAATTGGG ATTACGATAT GGTATGTTTT TGCTTATATA ACAAAAAATA CAGGCACAGC 21057 ||||||| .......... .......... .......... .......... .......... ...GCACAGC 189 AGCTACGTTC ATGCCAGCAG TTTCTAAGGC AGAGGAGCCA GCAGTACGAG GACCAACAGA 20997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTACGTTC ATGCCAGCAG TTTCTAAGGC AGAGGAGCCA GCAGTACGAG GACCAACAGA 249 TTCCTCGTGA TGTTCAACAA TGTTGCAATC AGCTTGAACA GATACAAGAC CCACAATGCC 20937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTCGTGA TGTTCAACAA TGTTGCAATC AGCTTGAACA GATACAAGAC CCACAATGCC 309 GTTGCGAGGG ACTCATGAAA GTGGTTCAAC AAGAGGAACA AACCGGGAAA GTTCAAGGAA 20877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCGAGGG ACTCATGAAA GTGGTTCAAC AAGAGGAACA AACCGGGAAA GTTCAAGGAA 369 GACAAAGGCA ACAGATGCTT CAAACTGCAG AGAATTTGCC TGGTTTATGT AGACTTAGCC 20817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAGGCA ACAGATGCTT CAAACTGCAG AGAATTTGCC TGGTTTATGT AGACTTAGCC 429 CACAACGATG TGAGATCCAA ACTGTTCGCA GCTTCTTTTA ATTTGCAAAA ATTATTTGTA 20757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACGATG TGAGATCCAA ACTGTTCGCA GCTTCTTTTA ATTTGCAAAA ATTATTTGTA 489 AGCCTGCGTT CGCTTATAAA TAAATAAATG ATCTAGTTGT TGTAAAACTC GATCGTAGTA 20697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTGCGTT CGCTTATAAA TAAATAAATG ATCTAGTTGT TGTAAAACTC GATCGTAGTA 549 ATAAAATAAA ATCACACCTT CTGGTGTGAT TTTTCTCTC 20658 |||||||||| |||||||||| |||||||||| ||||||||| ATAAAATAAA ATCACACCTT CTGGTGTGAT TTTTCTCTC 588 hqPGS_C08HBa0197J17.1-_SGN-E554956+ (21836 21655,21063 20658) ******************************************************************************** EST sequence 106 +strand 633 n (File: SGN-E555935+) 1 AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 61 CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 121 TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 181 AGGCACAGCA GCTACGTTCA TGCCAGCAGT TTCTAAGGCA GAGGAGCCAG CAGTACGAGG 241 ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 301 CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 361 TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 421 GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 481 TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 541 ATCGTAGTAA TAAAATAAAA TCACACCTTC TGGTGTGATT TTTCTCTCNN AAAAAAAAAA 601 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 22436 to 19598): Exon 1 21836 21655 ( 182 n); cDNA 1 182 ( 182 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20658 ( 406 n); cDNA 183 588 ( 406 n); score: 1.000 PPA cDNA 591 633 MATCH C08HBa0197J17.1- SGN-E555935+ 1.000 588 0.929 C PGS_C08HBa0197J17.1-_SGN-E555935+ (21836 21655,21063 20658) Alignment (genomic DNA sequence = upper lines): AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 21777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAACAAAA AAAGAGAAGT ATATAATTAA AAATCATGGG TAAAACTATG ATAGTTGGAG 60 CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 21717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTTCTTT AGCCATCCTT TTCATGGCAG CCACAGTTTG TAGCTCACGT ATCATGACCA 120 TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 21657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCATTGC TGAAGATGCT CTTAACCCTC AAACTCAAAG CTGCCAGCAG CAATTTCAAC 180 AGGTTTCGCT TTCATTTTAT CTAATTCCCC CCCCCCCCCC CCCCCTTTTA CGCTTTTTGA 21597 || AG........ .......... .......... .......... .......... .......... 182 TTTATGTGAC ATTTTTCATT TTTTTCCTTC TTTTTTAATT AATTTTTTTT AGTTATGAAA 21537 .......... .......... .......... .......... .......... .......... 182 TTCAAGTAAA TCTTTTAATT CTAATTTTTT ATATATCTTT TACAAATATT TTAAAGGCAT 21477 .......... .......... .......... .......... .......... .......... 182 ATTATATAAA CATGACCTTT AACTTGATTT CAACAGATAA CTATGCATTT TAATTTTAAG 21417 .......... .......... .......... .......... .......... .......... 182 TCTATAAATA AACACTTAAA TTTTTATAAA ATTAAATAAA TAGACAAAAA TGTCCTTCGT 21357 .......... .......... .......... .......... .......... .......... 182 TCATGGCATA ATACAGTTAG GATGTTATGT TAATTGTCAT CTAGGATGTC ACGCCGAACG 21297 .......... .......... .......... .......... .......... .......... 182 AATGTGTTTA TTGTTCAATT TTATACAAAT TTAAGTTTGT ATTTATACAA ATCCAAAGTT 21237 .......... .......... .......... .......... .......... .......... 182 AAAGATTGAC AGTACAAGTT TAAGTACCTC TATATATTTC AATTCACAAA ATTTAAAGAT 21177 .......... .......... .......... .......... .......... .......... 182 TTCATGCACA TATTCTGATA AATTTAAACC GCTTGATCTT TGAAAAAAGA AAAGTATCAC 21117 .......... .......... .......... .......... .......... .......... 182 GTAAATTGGG ATTACGATAT GGTATGTTTT TGCTTATATA ACAAAAAATA CAGGCACAGC 21057 ||||||| .......... .......... .......... .......... .......... ...GCACAGC 189 AGCTACGTTC ATGCCAGCAG TTTCTAAGGC AGAGGAGCCA GCAGTACGAG GACCAACAGA 20997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTACGTTC ATGCCAGCAG TTTCTAAGGC AGAGGAGCCA GCAGTACGAG GACCAACAGA 249 TTCCTCGTGA TGTTCAACAA TGTTGCAATC AGCTTGAACA GATACAAGAC CCACAATGCC 20937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTCGTGA TGTTCAACAA TGTTGCAATC AGCTTGAACA GATACAAGAC CCACAATGCC 309 GTTGCGAGGG ACTCATGAAA GTGGTTCAAC AAGAGGAACA AACCGGGAAA GTTCAAGGAA 20877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCGAGGG ACTCATGAAA GTGGTTCAAC AAGAGGAACA AACCGGGAAA GTTCAAGGAA 369 GACAAAGGCA ACAGATGCTT CAAACTGCAG AGAATTTGCC TGGTTTATGT AGACTTAGCC 20817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAGGCA ACAGATGCTT CAAACTGCAG AGAATTTGCC TGGTTTATGT AGACTTAGCC 429 CACAACGATG TGAGATCCAA ACTGTTCGCA GCTTCTTTTA ATTTGCAAAA ATTATTTGTA 20757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACGATG TGAGATCCAA ACTGTTCGCA GCTTCTTTTA ATTTGCAAAA ATTATTTGTA 489 AGCCTGCGTT CGCTTATAAA TAAATAAATG ATCTAGTTGT TGTAAAACTC GATCGTAGTA 20697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTGCGTT CGCTTATAAA TAAATAAATG ATCTAGTTGT TGTAAAACTC GATCGTAGTA 549 ATAAAATAAA ATCACACCTT CTGGTGTGAT TTTTCTCTC 20658 |||||||||| |||||||||| |||||||||| ||||||||| ATAAAATAAA ATCACACCTT CTGGTGTGAT TTTTCTCTC 588 hqPGS_C08HBa0197J17.1-_SGN-E555935+ (21836 21655,21063 20658) ******************************************************************************** EST sequence 93 +strand 613 n (File: SGN-E554435+) 1 AACAAAAAAA GAGAAGTATA TAATTAAAAA TCATGGGTAA AACTATGATA GTTGGAGCCA 61 TTTCTTTAGC CATCCTTTTC ATGGCAGCCA CAGTTTGTAG CTCACGTATC ATGACCATCA 121 CCATTGCTGA AGATGCTCTT AACCCTCAAA CTCAAAGCTG CCAGCAGCAA TTTCAACAGG 181 CACAGCAGCT ACGTTCATGC CAGCAGTTTC TAAGGCAGAG GAGCCAGCAG TACGAGGACC 241 AACAGATTCC TCGTGATGTT CAACAATGTT GCAATCAGCT TGAACAGATA CAAGACCCAC 301 AATGCCGTTG CGAGGGACTC ATGAAAGTGG TTCAACAAGA GGAACAAACC GGGAAAGTTC 361 AAGGAAGACA AAGGCAACAG ATGCTTCAAA CTGCAGAGAA TTTGCCTGGT TTATGTAGAC 421 TTAGCCCACA ACGATGTGAG ATCCAAACTG TTCGCAGCTT CTTTTAATTT GCAAAAATTA 481 TTTGTAAGCC TGCGTTCGCT TATAAATAAA TAAATGATCT AGTTGTTGTA AAACTCGATC 541 GTAGTAATAA AATAAAATCA CACCTTCTGG TGTGATTTTT CTCTCNNAAA AAAAAAAAAA 601 AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 22433 to 19768): Exon 1 21833 21655 ( 179 n); cDNA 1 179 ( 179 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20658 ( 406 n); cDNA 180 585 ( 406 n); score: 1.000 PPA cDNA 588 613 MATCH C08HBa0197J17.1- SGN-E554435+ 1.000 585 0.954 C PGS_C08HBa0197J17.1-_SGN-E554435+ (21833 21655,21063 20658) Alignment (genomic DNA sequence = upper lines): AACAAAAAAA GAGAAGTATA TAATTAAAAA TCATGGGTAA AACTATGATA GTTGGAGCCA 21774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAAAAAA GAGAAGTATA TAATTAAAAA TCATGGGTAA AACTATGATA GTTGGAGCCA 60 TTTCTTTAGC CATCCTTTTC ATGGCAGCCA CAGTTTGTAG CTCACGTATC ATGACCATCA 21714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTAGC CATCCTTTTC ATGGCAGCCA CAGTTTGTAG CTCACGTATC ATGACCATCA 120 CCATTGCTGA AGATGCTCTT AACCCTCAAA CTCAAAGCTG CCAGCAGCAA TTTCAACAGG 21654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCATTGCTGA AGATGCTCTT AACCCTCAAA CTCAAAGCTG CCAGCAGCAA TTTCAACAG. 179 TTTCGCTTTC ATTTTATCTA ATTCCCCCCC CCCCCCCCCC CCTTTTACGC TTTTTGATTT 21594 .......... .......... .......... .......... .......... .......... 179 ATGTGACATT TTTCATTTTT TTCCTTCTTT TTTAATTAAT TTTTTTTAGT TATGAAATTC 21534 .......... .......... .......... .......... .......... .......... 179 AAGTAAATCT TTTAATTCTA ATTTTTTATA TATCTTTTAC AAATATTTTA AAGGCATATT 21474 .......... .......... .......... .......... .......... .......... 179 ATATAAACAT GACCTTTAAC TTGATTTCAA CAGATAACTA TGCATTTTAA TTTTAAGTCT 21414 .......... .......... .......... .......... .......... .......... 179 ATAAATAAAC ACTTAAATTT TTATAAAATT AAATAAATAG ACAAAAATGT CCTTCGTTCA 21354 .......... .......... .......... .......... .......... .......... 179 TGGCATAATA CAGTTAGGAT GTTATGTTAA TTGTCATCTA GGATGTCACG CCGAACGAAT 21294 .......... .......... .......... .......... .......... .......... 179 GTGTTTATTG TTCAATTTTA TACAAATTTA AGTTTGTATT TATACAAATC CAAAGTTAAA 21234 .......... .......... .......... .......... .......... .......... 179 GATTGACAGT ACAAGTTTAA GTACCTCTAT ATATTTCAAT TCACAAAATT TAAAGATTTC 21174 .......... .......... .......... .......... .......... .......... 179 ATGCACATAT TCTGATAAAT TTAAACCGCT TGATCTTTGA AAAAAGAAAA GTATCACGTA 21114 .......... .......... .......... .......... .......... .......... 179 AATTGGGATT ACGATATGGT ATGTTTTTGC TTATATAACA AAAAATACAG GCACAGCAGC 21054 |||||||||| .......... .......... .......... .......... .......... GCACAGCAGC 189 TACGTTCATG CCAGCAGTTT CTAAGGCAGA GGAGCCAGCA GTACGAGGAC CAACAGATTC 20994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGTTCATG CCAGCAGTTT CTAAGGCAGA GGAGCCAGCA GTACGAGGAC CAACAGATTC 249 CTCGTGATGT TCAACAATGT TGCAATCAGC TTGAACAGAT ACAAGACCCA CAATGCCGTT 20934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTGATGT TCAACAATGT TGCAATCAGC TTGAACAGAT ACAAGACCCA CAATGCCGTT 309 GCGAGGGACT CATGAAAGTG GTTCAACAAG AGGAACAAAC CGGGAAAGTT CAAGGAAGAC 20874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGGGACT CATGAAAGTG GTTCAACAAG AGGAACAAAC CGGGAAAGTT CAAGGAAGAC 369 AAAGGCAACA GATGCTTCAA ACTGCAGAGA ATTTGCCTGG TTTATGTAGA CTTAGCCCAC 20814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCAACA GATGCTTCAA ACTGCAGAGA ATTTGCCTGG TTTATGTAGA CTTAGCCCAC 429 AACGATGTGA GATCCAAACT GTTCGCAGCT TCTTTTAATT TGCAAAAATT ATTTGTAAGC 20754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGATGTGA GATCCAAACT GTTCGCAGCT TCTTTTAATT TGCAAAAATT ATTTGTAAGC 489 CTGCGTTCGC TTATAAATAA ATAAATGATC TAGTTGTTGT AAAACTCGAT CGTAGTAATA 20694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCGTTCGC TTATAAATAA ATAAATGATC TAGTTGTTGT AAAACTCGAT CGTAGTAATA 549 AAATAAAATC ACACCTTCTG GTGTGATTTT TCTCTC 20658 |||||||||| |||||||||| |||||||||| |||||| AAATAAAATC ACACCTTCTG GTGTGATTTT TCTCTC 585 hqPGS_C08HBa0197J17.1-_SGN-E554435+ (21833 21655,21063 20658) ******************************************************************************** EST sequence 98 +strand 590 n (File: SGN-E554730+) 1 CATAATAACA AAAAAAGAGA AGTATATAAT TAAAAATCAT GGGTAAAACT ATGATAGTTG 61 GAGCCATTTC TTTAGCCATC CTTTTCATGG CAGCCACAGT TTGTAGCTCA CGTATCATGA 121 CCATCACCAT TGCTGAAGAT GCTCTTAACC CTCAAACTCA AAGCTGCCAG CAGCAATTTC 181 AACAGGCACA GCAGCTACGT TCATGCCAGC AGTTTCTAAG GCAGAGGAGC CAGCAGTACG 241 AGGACCAACA GATTCCTCGT GATGTTCAAC AATGTTGCAA TCAGCTTGAA CAGATACAAG 301 ACCCACAATG CCGTTGCGAG GGACTCATGA AAGTGGTTCA ACAAGAGGAA CAAACCGGGA 361 AAGTTCAAGG AAGACAAAGG CAACAGATGC TTCAAACTGC AGAGAATTTG CCTGGTTTAT 421 GTAGACTTAG CCCACAACGA TGTGAGATCC AAACTGTTCG CAGCTTCTTT TAATTTGCAA 481 AAATTATTTG TAAGCCTGCG TTCGCTTATA AATAAATAAA TGATCTAGTT GTTGTAAAAC 541 TCGATCGTAG TAATAAAATA AAATCACACC TTCTGGTGTG ATTTTTCTCT Predicted gene structure (within gDNA segment 22439 to 20049): Exon 1 21839 21655 ( 185 n); cDNA 1 185 ( 185 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20659 ( 405 n); cDNA 186 590 ( 405 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E554730+ 1.000 590 1.000 C PGS_C08HBa0197J17.1-_SGN-E554730+ (21839 21655,21063 20659) Alignment (genomic DNA sequence = upper lines): CATAATAACA AAAAAAGAGA AGTATATAAT TAAAAATCAT GGGTAAAACT ATGATAGTTG 21780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATAACA AAAAAAGAGA AGTATATAAT TAAAAATCAT GGGTAAAACT ATGATAGTTG 60 GAGCCATTTC TTTAGCCATC CTTTTCATGG CAGCCACAGT TTGTAGCTCA CGTATCATGA 21720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCATTTC TTTAGCCATC CTTTTCATGG CAGCCACAGT TTGTAGCTCA CGTATCATGA 120 CCATCACCAT TGCTGAAGAT GCTCTTAACC CTCAAACTCA AAGCTGCCAG CAGCAATTTC 21660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCACCAT TGCTGAAGAT GCTCTTAACC CTCAAACTCA AAGCTGCCAG CAGCAATTTC 180 AACAGGTTTC GCTTTCATTT TATCTAATTC CCCCCCCCCC CCCCCCCCTT TTACGCTTTT 21600 ||||| AACAG..... .......... .......... .......... .......... .......... 185 TGATTTATGT GACATTTTTC ATTTTTTTCC TTCTTTTTTA ATTAATTTTT TTTAGTTATG 21540 .......... .......... .......... .......... .......... .......... 185 AAATTCAAGT AAATCTTTTA ATTCTAATTT TTTATATATC TTTTACAAAT ATTTTAAAGG 21480 .......... .......... .......... .......... .......... .......... 185 CATATTATAT AAACATGACC TTTAACTTGA TTTCAACAGA TAACTATGCA TTTTAATTTT 21420 .......... .......... .......... .......... .......... .......... 185 AAGTCTATAA ATAAACACTT AAATTTTTAT AAAATTAAAT AAATAGACAA AAATGTCCTT 21360 .......... .......... .......... .......... .......... .......... 185 CGTTCATGGC ATAATACAGT TAGGATGTTA TGTTAATTGT CATCTAGGAT GTCACGCCGA 21300 .......... .......... .......... .......... .......... .......... 185 ACGAATGTGT TTATTGTTCA ATTTTATACA AATTTAAGTT TGTATTTATA CAAATCCAAA 21240 .......... .......... .......... .......... .......... .......... 185 GTTAAAGATT GACAGTACAA GTTTAAGTAC CTCTATATAT TTCAATTCAC AAAATTTAAA 21180 .......... .......... .......... .......... .......... .......... 185 GATTTCATGC ACATATTCTG ATAAATTTAA ACCGCTTGAT CTTTGAAAAA AGAAAAGTAT 21120 .......... .......... .......... .......... .......... .......... 185 CACGTAAATT GGGATTACGA TATGGTATGT TTTTGCTTAT ATAACAAAAA ATACAGGCAC 21060 |||| .......... .......... .......... .......... .......... ......GCAC 189 AGCAGCTACG TTCATGCCAG CAGTTTCTAA GGCAGAGGAG CCAGCAGTAC GAGGACCAAC 21000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCTACG TTCATGCCAG CAGTTTCTAA GGCAGAGGAG CCAGCAGTAC GAGGACCAAC 249 AGATTCCTCG TGATGTTCAA CAATGTTGCA ATCAGCTTGA ACAGATACAA GACCCACAAT 20940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTCCTCG TGATGTTCAA CAATGTTGCA ATCAGCTTGA ACAGATACAA GACCCACAAT 309 GCCGTTGCGA GGGACTCATG AAAGTGGTTC AACAAGAGGA ACAAACCGGG AAAGTTCAAG 20880 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTTGCGA GGGACTCATG AAAGTGGTTC AACAAGAGGA ACAAACCGGG AAAGTTCAAG 369 GAAGACAAAG GCAACAGATG CTTCAAACTG CAGAGAATTT GCCTGGTTTA TGTAGACTTA 20820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACAAAG GCAACAGATG CTTCAAACTG CAGAGAATTT GCCTGGTTTA TGTAGACTTA 429 GCCCACAACG ATGTGAGATC CAAACTGTTC GCAGCTTCTT TTAATTTGCA AAAATTATTT 20760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCACAACG ATGTGAGATC CAAACTGTTC GCAGCTTCTT TTAATTTGCA AAAATTATTT 489 GTAAGCCTGC GTTCGCTTAT AAATAAATAA ATGATCTAGT TGTTGTAAAA CTCGATCGTA 20700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGCCTGC GTTCGCTTAT AAATAAATAA ATGATCTAGT TGTTGTAAAA CTCGATCGTA 549 GTAATAAAAT AAAATCACAC CTTCTGGTGT GATTTTTCTC T 20659 |||||||||| |||||||||| |||||||||| |||||||||| | GTAATAAAAT AAAATCACAC CTTCTGGTGT GATTTTTCTC T 590 hqPGS_C08HBa0197J17.1-_SGN-E554730+ (21839 21655,21063 20659) ******************************************************************************** EST sequence 86 +strand 586 n (File: SGN-E553423+) 1 ATCATAATAA CAAAAAAAGA GAAGTATATA ATTAAAAATC ATGGGTAAAA CTATGATAGT 61 TGGAGCCATT TCTTTAGCCA TCCTTTTCAT GGCAGCCACA GTTTGTAGCT CACGTATCAT 121 GACCATCACC ATTGCTGAAG ATGCTCTTAA CCCTCAAACT CAAAGCTGCC AGCAGCAATT 181 TCAACAGGCA CAGCAGCTAC GTTCATGCCA GCAGTTTCTA AGGCAGAGGA GCCAGCAGTA 241 CGAGGACCAA CAGATTCCTC GTGATGTTCA ACAATGTTGC AATCAGCTTG AACAGATACA 301 AGACCCACAA TGCCGTTGCG AGGGACTCAT GAAAGTGGTT CAACAAGAGG AACAAACCGG 361 GAAAGTTCAA GGAAGACAAA GGCAACAGAT GCTTCAAACT GCAGAGAATT TGCCTGGTTT 421 ATGTAGACTT AGCCCACAAC GATGTGAGAT CCAAACTGTT CGCAGCTTCT TTTAATTTGC 481 AAAAATTATT TGTAAGCCTG CGTTCGCTTA TAAATAAATA AATGATCTAG TTGTTGTAAA 541 ACTCGATCGT AGTAATAAAA TAAAATCACA CCTTCTGGTG TGATTT Predicted gene structure (within gDNA segment 22441 to 20055): Exon 1 21841 21655 ( 187 n); cDNA 1 187 ( 187 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20665 ( 399 n); cDNA 188 586 ( 399 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E553423+ 1.000 586 1.000 C PGS_C08HBa0197J17.1-_SGN-E553423+ (21841 21655,21063 20665) Alignment (genomic DNA sequence = upper lines): ATCATAATAA CAAAAAAAGA GAAGTATATA ATTAAAAATC ATGGGTAAAA CTATGATAGT 21782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATAATAA CAAAAAAAGA GAAGTATATA ATTAAAAATC ATGGGTAAAA CTATGATAGT 60 TGGAGCCATT TCTTTAGCCA TCCTTTTCAT GGCAGCCACA GTTTGTAGCT CACGTATCAT 21722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCCATT TCTTTAGCCA TCCTTTTCAT GGCAGCCACA GTTTGTAGCT CACGTATCAT 120 GACCATCACC ATTGCTGAAG ATGCTCTTAA CCCTCAAACT CAAAGCTGCC AGCAGCAATT 21662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCATCACC ATTGCTGAAG ATGCTCTTAA CCCTCAAACT CAAAGCTGCC AGCAGCAATT 180 TCAACAGGTT TCGCTTTCAT TTTATCTAAT TCCCCCCCCC CCCCCCCCCC TTTTACGCTT 21602 ||||||| TCAACAG... .......... .......... .......... .......... .......... 187 TTTGATTTAT GTGACATTTT TCATTTTTTT CCTTCTTTTT TAATTAATTT TTTTTAGTTA 21542 .......... .......... .......... .......... .......... .......... 187 TGAAATTCAA GTAAATCTTT TAATTCTAAT TTTTTATATA TCTTTTACAA ATATTTTAAA 21482 .......... .......... .......... .......... .......... .......... 187 GGCATATTAT ATAAACATGA CCTTTAACTT GATTTCAACA GATAACTATG CATTTTAATT 21422 .......... .......... .......... .......... .......... .......... 187 TTAAGTCTAT AAATAAACAC TTAAATTTTT ATAAAATTAA ATAAATAGAC AAAAATGTCC 21362 .......... .......... .......... .......... .......... .......... 187 TTCGTTCATG GCATAATACA GTTAGGATGT TATGTTAATT GTCATCTAGG ATGTCACGCC 21302 .......... .......... .......... .......... .......... .......... 187 GAACGAATGT GTTTATTGTT CAATTTTATA CAAATTTAAG TTTGTATTTA TACAAATCCA 21242 .......... .......... .......... .......... .......... .......... 187 AAGTTAAAGA TTGACAGTAC AAGTTTAAGT ACCTCTATAT ATTTCAATTC ACAAAATTTA 21182 .......... .......... .......... .......... .......... .......... 187 AAGATTTCAT GCACATATTC TGATAAATTT AAACCGCTTG ATCTTTGAAA AAAGAAAAGT 21122 .......... .......... .......... .......... .......... .......... 187 ATCACGTAAA TTGGGATTAC GATATGGTAT GTTTTTGCTT ATATAACAAA AAATACAGGC 21062 || .......... .......... .......... .......... .......... ........GC 189 ACAGCAGCTA CGTTCATGCC AGCAGTTTCT AAGGCAGAGG AGCCAGCAGT ACGAGGACCA 21002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCAGCTA CGTTCATGCC AGCAGTTTCT AAGGCAGAGG AGCCAGCAGT ACGAGGACCA 249 ACAGATTCCT CGTGATGTTC AACAATGTTG CAATCAGCTT GAACAGATAC AAGACCCACA 20942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGATTCCT CGTGATGTTC AACAATGTTG CAATCAGCTT GAACAGATAC AAGACCCACA 309 ATGCCGTTGC GAGGGACTCA TGAAAGTGGT TCAACAAGAG GAACAAACCG GGAAAGTTCA 20882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCGTTGC GAGGGACTCA TGAAAGTGGT TCAACAAGAG GAACAAACCG GGAAAGTTCA 369 AGGAAGACAA AGGCAACAGA TGCTTCAAAC TGCAGAGAAT TTGCCTGGTT TATGTAGACT 20822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGACAA AGGCAACAGA TGCTTCAAAC TGCAGAGAAT TTGCCTGGTT TATGTAGACT 429 TAGCCCACAA CGATGTGAGA TCCAAACTGT TCGCAGCTTC TTTTAATTTG CAAAAATTAT 20762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCCACAA CGATGTGAGA TCCAAACTGT TCGCAGCTTC TTTTAATTTG CAAAAATTAT 489 TTGTAAGCCT GCGTTCGCTT ATAAATAAAT AAATGATCTA GTTGTTGTAA AACTCGATCG 20702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAAGCCT GCGTTCGCTT ATAAATAAAT AAATGATCTA GTTGTTGTAA AACTCGATCG 549 TAGTAATAAA ATAAAATCAC ACCTTCTGGT GTGATTT 20665 |||||||||| |||||||||| |||||||||| ||||||| TAGTAATAAA ATAAAATCAC ACCTTCTGGT GTGATTT 586 hqPGS_C08HBa0197J17.1-_SGN-E553423+ (21841 21655,21063 20665) ******************************************************************************** EST sequence 118 +strand 557 n (File: SGN-E247671+) 1 AAAAAGAGAA GTATATAATT AAAAATCATG GGTAAAACTA TGATAGTTGG AGCCATTTCT 61 TTAGCCATCC TTTTCATGGC AGCCACAGTT TGTAGCTCAC GTATCATGAC CATCACCATT 121 GCTGAAGATG CTCTTAACCC TCAAACTCAA AGCTGCCAGC AGCAATTTCA ACAGGCACAG 181 CAGCTACGTT CATGCCAGCA GTTTCTAAGG CAGAGGAGCC AGCAGTACGA GGACCAACAG 241 ATTCCTCGTG ATGTTCAACA ATGTTGCAAT CAGCTTGAAC AGATACAAGA CCCACAATGC 301 CGTTGCGAGG GACTCATGAA AGTGGTTCAA CAAGAGGAAC AAACCGGGAA AGTTCAAGGA 361 AGACAAAGGC AACAGATGCT TCAAACTGCA GAGAATTTGC CTGGTTTATG TAGACTTAGC 421 CCACAACGAT GTGAGATCCA AACTGTTCGC AGCTTCTTTT AATTTGCAAA AATTATTTGT 481 AAGCCTGCGT TCGCTTATAA ATAAATAAAT GATCTAGTTG TTGTAAAACT CGATCGTAGT 541 AATAAAATAA AATCACA Predicted gene structure (within gDNA segment 22428 to 20071): Exon 1 21828 21655 ( 174 n); cDNA 1 174 ( 174 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20681 ( 383 n); cDNA 175 557 ( 383 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E247671+ 1.000 557 1.000 C PGS_C08HBa0197J17.1-_SGN-E247671+ (21828 21655,21063 20681) Alignment (genomic DNA sequence = upper lines): AAAAAGAGAA GTATATAATT AAAAATCATG GGTAAAACTA TGATAGTTGG AGCCATTTCT 21769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGAGAA GTATATAATT AAAAATCATG GGTAAAACTA TGATAGTTGG AGCCATTTCT 60 TTAGCCATCC TTTTCATGGC AGCCACAGTT TGTAGCTCAC GTATCATGAC CATCACCATT 21709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCCATCC TTTTCATGGC AGCCACAGTT TGTAGCTCAC GTATCATGAC CATCACCATT 120 GCTGAAGATG CTCTTAACCC TCAAACTCAA AGCTGCCAGC AGCAATTTCA ACAGGTTTCG 21649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GCTGAAGATG CTCTTAACCC TCAAACTCAA AGCTGCCAGC AGCAATTTCA ACAG...... 174 CTTTCATTTT ATCTAATTCC CCCCCCCCCC CCCCCCCTTT TACGCTTTTT GATTTATGTG 21589 .......... .......... .......... .......... .......... .......... 174 ACATTTTTCA TTTTTTTCCT TCTTTTTTAA TTAATTTTTT TTAGTTATGA AATTCAAGTA 21529 .......... .......... .......... .......... .......... .......... 174 AATCTTTTAA TTCTAATTTT TTATATATCT TTTACAAATA TTTTAAAGGC ATATTATATA 21469 .......... .......... .......... .......... .......... .......... 174 AACATGACCT TTAACTTGAT TTCAACAGAT AACTATGCAT TTTAATTTTA AGTCTATAAA 21409 .......... .......... .......... .......... .......... .......... 174 TAAACACTTA AATTTTTATA AAATTAAATA AATAGACAAA AATGTCCTTC GTTCATGGCA 21349 .......... .......... .......... .......... .......... .......... 174 TAATACAGTT AGGATGTTAT GTTAATTGTC ATCTAGGATG TCACGCCGAA CGAATGTGTT 21289 .......... .......... .......... .......... .......... .......... 174 TATTGTTCAA TTTTATACAA ATTTAAGTTT GTATTTATAC AAATCCAAAG TTAAAGATTG 21229 .......... .......... .......... .......... .......... .......... 174 ACAGTACAAG TTTAAGTACC TCTATATATT TCAATTCACA AAATTTAAAG ATTTCATGCA 21169 .......... .......... .......... .......... .......... .......... 174 CATATTCTGA TAAATTTAAA CCGCTTGATC TTTGAAAAAA GAAAAGTATC ACGTAAATTG 21109 .......... .......... .......... .......... .......... .......... 174 GGATTACGAT ATGGTATGTT TTTGCTTATA TAACAAAAAA TACAGGCACA GCAGCTACGT 21049 ||||| |||||||||| .......... .......... .......... .......... .....GCACA GCAGCTACGT 189 TCATGCCAGC AGTTTCTAAG GCAGAGGAGC CAGCAGTACG AGGACCAACA GATTCCTCGT 20989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGCCAGC AGTTTCTAAG GCAGAGGAGC CAGCAGTACG AGGACCAACA GATTCCTCGT 249 GATGTTCAAC AATGTTGCAA TCAGCTTGAA CAGATACAAG ACCCACAATG CCGTTGCGAG 20929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTCAAC AATGTTGCAA TCAGCTTGAA CAGATACAAG ACCCACAATG CCGTTGCGAG 309 GGACTCATGA AAGTGGTTCA ACAAGAGGAA CAAACCGGGA AAGTTCAAGG AAGACAAAGG 20869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTCATGA AAGTGGTTCA ACAAGAGGAA CAAACCGGGA AAGTTCAAGG AAGACAAAGG 369 CAACAGATGC TTCAAACTGC AGAGAATTTG CCTGGTTTAT GTAGACTTAG CCCACAACGA 20809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAGATGC TTCAAACTGC AGAGAATTTG CCTGGTTTAT GTAGACTTAG CCCACAACGA 429 TGTGAGATCC AAACTGTTCG CAGCTTCTTT TAATTTGCAA AAATTATTTG TAAGCCTGCG 20749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAGATCC AAACTGTTCG CAGCTTCTTT TAATTTGCAA AAATTATTTG TAAGCCTGCG 489 TTCGCTTATA AATAAATAAA TGATCTAGTT GTTGTAAAAC TCGATCGTAG TAATAAAATA 20689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCTTATA AATAAATAAA TGATCTAGTT GTTGTAAAAC TCGATCGTAG TAATAAAATA 549 AAATCACA 20681 |||||||| AAATCACA 557 hqPGS_C08HBa0197J17.1-_SGN-E247671+ (21828 21655,21063 20681) ******************************************************************************** EST sequence 90 +strand 568 n (File: SGN-E554149+) 1 ATTAATCATC ATCATCATAA TAACAAAAAA AGAGAAGTAT ATAATTAAAA ATCATGGGTA 61 AAACTATGAT AGTTGGAGCC ATTTCTTTAG CCATCCTTTT CATGGCAGCC ACAGTTTGTA 121 GCTCACGTAT CATGACCATC ACCATTGCTG AAGATGCTCT TAACCCTCAA ACTCAAAGCT 181 GCCAGCAGCA ATTTCAACAG GCACAGCAGC TACGTTCATG CCAGCAGTTT CTAAGGCAGA 241 GGAGCCAGCA GTACGAGGAC CAACAGATTC CTCGTGATGT TCAACAATGT TGCAATCAGC 301 TTGAACAGAT ACAAGACCCA CAATGCCGTT GCGAGGGACT CATGAAAGTG GTTCAACAAG 361 AGGAACAAAC CGGGAAAGTT CAAGGAAGAC AAAGGCAACA GATGCTTCAA ACTGCAGAGA 421 ATTTGCCTGG TTTATGTAGA CTTAGCCCAC AACGATGTGA GATCCAAACT GTTCGCAGCT 481 TCTTTTAATT TGCAAAAATT ATTTGTAAGC CTGCGTTCGC TTATAAATAA ATAAATGATC 541 TAGTTGTTGT AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 22454 to 19960): Exon 1 21854 21655 ( 200 n); cDNA 1 200 ( 200 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 21063 20696 ( 368 n); cDNA 201 568 ( 368 n); score: 0.973 MATCH C08HBa0197J17.1- SGN-E554149+ 0.982 568 1.000 C PGS_C08HBa0197J17.1-_SGN-E554149+ (21854 21655,21063 20696) Alignment (genomic DNA sequence = upper lines): ATTAATCATC ATCATCATAA TAACAAAAAA AGAGAAGTAT ATAATTAAAA ATCATGGGTA 21795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAATCATC ATCATCATAA TAACAAAAAA AGAGAAGTAT ATAATTAAAA ATCATGGGTA 60 AAACTATGAT AGTTGGAGCC ATTTCTTTAG CCATCCTTTT CATGGCAGCC ACAGTTTGTA 21735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTATGAT AGTTGGAGCC ATTTCTTTAG CCATCCTTTT CATGGCAGCC ACAGTTTGTA 120 GCTCACGTAT CATGACCATC ACCATTGCTG AAGATGCTCT TAACCCTCAA ACTCAAAGCT 21675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCACGTAT CATGACCATC ACCATTGCTG AAGATGCTCT TAACCCTCAA ACTCAAAGCT 180 GCCAGCAGCA ATTTCAACAG GTTTCGCTTT CATTTTATCT AATTCCCCCC CCCCCCCCCC 21615 |||||||||| |||||||||| GCCAGCAGCA ATTTCAACAG .......... .......... .......... .......... 200 CCCTTTTACG CTTTTTGATT TATGTGACAT TTTTCATTTT TTTCCTTCTT TTTTAATTAA 21555 .......... .......... .......... .......... .......... .......... 200 TTTTTTTTAG TTATGAAATT CAAGTAAATC TTTTAATTCT AATTTTTTAT ATATCTTTTA 21495 .......... .......... .......... .......... .......... .......... 200 CAAATATTTT AAAGGCATAT TATATAAACA TGACCTTTAA CTTGATTTCA ACAGATAACT 21435 .......... .......... .......... .......... .......... .......... 200 ATGCATTTTA ATTTTAAGTC TATAAATAAA CACTTAAATT TTTATAAAAT TAAATAAATA 21375 .......... .......... .......... .......... .......... .......... 200 GACAAAAATG TCCTTCGTTC ATGGCATAAT ACAGTTAGGA TGTTATGTTA ATTGTCATCT 21315 .......... .......... .......... .......... .......... .......... 200 AGGATGTCAC GCCGAACGAA TGTGTTTATT GTTCAATTTT ATACAAATTT AAGTTTGTAT 21255 .......... .......... .......... .......... .......... .......... 200 TTATACAAAT CCAAAGTTAA AGATTGACAG TACAAGTTTA AGTACCTCTA TATATTTCAA 21195 .......... .......... .......... .......... .......... .......... 200 TTCACAAAAT TTAAAGATTT CATGCACATA TTCTGATAAA TTTAAACCGC TTGATCTTTG 21135 .......... .......... .......... .......... .......... .......... 200 AAAAAAGAAA AGTATCACGT AAATTGGGAT TACGATATGG TATGTTTTTG CTTATATAAC 21075 .......... .......... .......... .......... .......... .......... 200 AAAAAATACA GGCACAGCAG CTACGTTCAT GCCAGCAGTT TCTAAGGCAG AGGAGCCAGC 21015 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCACAGCAG CTACGTTCAT GCCAGCAGTT TCTAAGGCAG AGGAGCCAGC 249 AGTACGAGGA CCAACAGATT CCTCGTGATG TTCAACAATG TTGCAATCAG CTTGAACAGA 20955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACGAGGA CCAACAGATT CCTCGTGATG TTCAACAATG TTGCAATCAG CTTGAACAGA 309 TACAAGACCC ACAATGCCGT TGCGAGGGAC TCATGAAAGT GGTTCAACAA GAGGAACAAA 20895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAGACCC ACAATGCCGT TGCGAGGGAC TCATGAAAGT GGTTCAACAA GAGGAACAAA 369 CCGGGAAAGT TCAAGGAAGA CAAAGGCAAC AGATGCTTCA AACTGCAGAG AATTTGCCTG 20835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGGAAAGT TCAAGGAAGA CAAAGGCAAC AGATGCTTCA AACTGCAGAG AATTTGCCTG 429 GTTTATGTAG ACTTAGCCCA CAACGATGTG AGATCCAAAC TGTTCGCAGC TTCTTTTAAT 20775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTATGTAG ACTTAGCCCA CAACGATGTG AGATCCAAAC TGTTCGCAGC TTCTTTTAAT 489 TTGCAAAAAT TATTTGTAAG CCTGCGTTCG CTTATAAATA AATAAATGAT CTAGTTGTTG 20715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAAAAAT TATTTGTAAG CCTGCGTTCG CTTATAAATA AATAAATGAT CTAGTTGTTG 549 TAAAACTCGA TCGTAGTAA 20696 ||||| | | || TAAAAAAAAA AAAAAAAAA 568 hqPGS_C08HBa0197J17.1-_SGN-E554149+ (21854 21655,21063 20696) ******************************************************************************** EST sequence 107 +strand 332 n (File: SGN-E244146+) 1 ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTGGCAATCA GCTTGAACAG ATACAAGACC 61 CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 121 TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 181 GACTTAACCC ACAACGATGT GAGATCCAAA CTGTTCGCAA CTTCTTTTAA TTTGCAAAAA 241 TTATTTGTAA GCCTGCGTTC GCTTATTAAT AAATAAATGA TCTACTTGGT GTAAAACTCG 301 ATCGTAGTAA TAAAATAAAA TCACACCTTC TG Predicted gene structure (within gDNA segment 21605 to 20064): Exon 1 21005 20674 ( 332 n); cDNA 1 332 ( 332 n); score: 0.982 MATCH C08HBa0197J17.1- SGN-E244146+ 0.982 332 1.000 C PGS_C08HBa0197J17.1-_SGN-E244146+ (21005 20674) Alignment (genomic DNA sequence = upper lines): ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTTGCAATCA GCTTGAACAG ATACAAGACC 20946 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ACCAACAGAT TCCTCGTGAT GTTCAACAAT GTGGCAATCA GCTTGAACAG ATACAAGACC 60 CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 20886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAATGCCG TTGCGAGGGA CTCATGAAAG TGGTTCAACA AGAGGAACAA ACCGGGAAAG 120 TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 20826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGGAAG ACAAAGGCAA CAGATGCTTC AAACTGCAGA GAATTTGCCT GGTTTATGTA 180 GACTTAGCCC ACAACGATGT GAGATCCAAA CTGTTCGCAG CTTCTTTTAA TTTGCAAAAA 20766 |||||| ||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GACTTAACCC ACAACGATGT GAGATCCAAA CTGTTCGCAA CTTCTTTTAA TTTGCAAAAA 240 TTATTTGTAA GCCTGCGTTC GCTTATAAAT AAATAAATGA TCTAGTTGTT GTAAAACTCG 20706 |||||||||| |||||||||| |||||| ||| |||||||||| |||| ||| | |||||||||| TTATTTGTAA GCCTGCGTTC GCTTATTAAT AAATAAATGA TCTACTTGGT GTAAAACTCG 300 ATCGTAGTAA TAAAATAAAA TCACACCTTC TG 20674 |||||||||| |||||||||| |||||||||| || ATCGTAGTAA TAAAATAAAA TCACACCTTC TG 332 hqPGS_C08HBa0197J17.1-_SGN-E244146+ (21005 20674) ******************************************************************************** EST sequence 122 -strand 584 n (File: SGN-E378080-) 1 TCAATTTGGA TCAACTCAAT ACAATGTTTG CCTCTCATGG TTTAAATCAG GCTAATATGA 61 TTGCCTTATC TGCGGCCCAT ACTGTTGGAT TTTCTCACTG CGACCAATTC TCGAACCGAA 121 TTTTCAACTT TAACCCTAAA AACCCAGTGG ATCCAAGTCT CAACAAGACG TATGCAGCCC 181 AATTAGAACA AATGTGTCCG AAAAATGTGG ACCCAAGAAT AGCCATCAAC ATGGACCCAA 241 TAACACCTAG GGCTTTTGAC AATGTGTATT TCCAAAACTT GCAAAACGGA ATGGGCCTAT 301 TCACATCAGA TCAAGTTTTG TTCACAGACC AAAGGTCTAA AGGTACTGTT AATTTGTGGG 361 CCAGTAATTT TAAAGTTTTT GAAACCGCAT TTGTTAATGC GATGACTAAA TTGGGCCGAG 421 TTGGTGTGAA GACGGGTAAG AATGGAAATA TTCGTATAGA CTGTGGAGCA TTTAATTAAG 481 GGCAACTTTC ACGTATAGCA AATAAAAAAT TCATATTTGT ATGTTATAAC AAAGTTTGCA 541 TAATTGCGCT CCATAGCAAA AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 16402 to 23340): Exon 1 17237 17249 ( 13 n); cDNA 405 417 ( 13 n); score: 0.692 Intron 1 17250 17753 ( 504 n); Pd: 0.000 (s: 0), Pa: 0.567 (s: 0) Exon 2 17754 17762 ( 9 n); cDNA 418 426 ( 9 n); score: 0.889 Intron 2 17763 17977 ( 215 n); Pd: 0.733 (s: 0), Pa: 0.000 (s: 0) Exon 3 17978 18011 ( 34 n); cDNA 427 459 ( 33 n); score: 0.588 Intron 3 18012 18668 ( 657 n); Pd: 0.000 (s: 0), Pa: 0.863 (s: 0) Exon 4 18669 18678 ( 10 n); cDNA 460 468 ( 9 n); score: 0.700 Intron 4 18679 22363 (3685 n); Pd: 0.281 (s: 0), Pa: 0.000 (s: 0.90) Exon 5 22364 22471 ( 108 n); cDNA 469 576 ( 108 n); score: 0.861 MATCH C08HBa0197J17.1+ SGN-E378080- 0.861 174 0.298 C PGS_C08HBa0197J17.1+_SGN-E378080- (17237 17249,17754 17762,17978 18011,18669 18678,22364 22471) Alignment (genomic DNA sequence = upper lines): ACAAAATTTG GGAGCTCTAG AATGGGATAA AGTAGTGCAC GGACATCAGG GCTGGAGGCT 17296 || ||||| | | ACTAAATTGG GCC....... .......... .......... .......... .......... 417 TTTCACTTGT ATCTGGTTAC ATGCTGGTGT TGTTCATCTG CTTGCAAACA TGTTGAGTTT 17356 .......... .......... .......... .......... .......... .......... 417 GGTATTCATT GGTATTCGCC TCGAGCAGCA GTTTGGATTT GGTACAATTC TCCTCCCTGT 17416 .......... .......... .......... .......... .......... .......... 417 GCCCTCAAAT ATTTCTTCAT GTTCTTTTGG ATAACACTAG TACACAACAA ATGTCTTTTT 17476 .......... .......... .......... .......... .......... .......... 417 ATGCATAAGC AATTCATTCT ACTTTCCTCT AAATTGTGCC CGTGTCTAGC TTCCTCGGCT 17536 .......... .......... .......... .......... .......... .......... 417 CCGTTTGTCA TTACAGTTCA TCTGCTGAAA TAGAAGTACT GTTTTTACTT GCAATCTCTT 17596 .......... .......... .......... .......... .......... .......... 417 TAACATCAAC AATTTCAGTC ACTTCTTTCT GAAATATAAC CCCACCTTCA ATTTTCTTAA 17656 .......... .......... .......... .......... .......... .......... 417 CCTTGAGCTG ACTAGTGTCT TAATTCACTT TTTGTTCTTA TATTTATATC TCTAATGTTA 17716 .......... .......... .......... .......... .......... .......... 417 TGTGCAGTCC GGGTGGGGAT TATCTACGTT TTGTCAGGAA TTGGTGGCAG TGTTCTTTCT 17776 || |||||| .......... .......... .......... .......GAG TTGGTG.... .......... 426 TGCCTTTTCA TTCAAGGTAG CATCTCTGTT GGAGCTTCTG GTGCTCTATT TGGACTTCTG 17836 .......... .......... .......... .......... .......... .......... 426 GGAGCAATGT TATCGGAGCT TCTTACTAAC TGGAGTATAT ATACCAATAA GGTATAAACC 17896 .......... .......... .......... .......... .......... .......... 426 CTGCTATTCT ACTGTTATTA TTTGTGTTCT TTCCCCTGTT GAGGAGGTTA TTCGTTTTAT 17956 .......... .......... .......... .......... .......... .......... 426 TTTATAACAC GTTCTAAGTA CTTAATTCCG GTACTAATTA ATCTCATTTA TACAGGCTGC 18016 | || | | ||| ||| | | ||| || || .......... .......... .TGAAGACGG GTAAGAATGG AAAT-ATTCG TATAG..... 459 AGCTCTTATC ACTCTCATTA TCATCATCGC GATTAACTTA GCTGTTGGTC TTCTTCCTCA 18076 .......... .......... .......... .......... .......... .......... 459 TGTCGATAAC TATGCCCATA TTGGAGGTTT CATGGGTGGT TTTCTTCTTG GCTTTGTTCT 18136 .......... .......... .......... .......... .......... .......... 459 GCTACTACGA CCTCAGTTTG GTTGGCTCGA AAGGCAACAT CTTCCAGCTG AAGGTCGTCT 18196 .......... .......... .......... .......... .......... .......... 459 CAAGTCCAAG TTCAAAGCTT ACCAATACGT CCTCCTGCTG ATTGCCTCGA TTTTGTTGAT 18256 .......... .......... .......... .......... .......... .......... 459 TGTCGGGTAA GCTCTCTCTC TGCTACGCCT AATCCTACAT TTGCCTTACA GCAGCGTCTA 18316 .......... .......... .......... .......... .......... .......... 459 GAAAATAAGT TAGAACGGTT GGTAACTTTT TCCTTTTTTT AGCTCAGATT AAATTATTCG 18376 .......... .......... .......... .......... .......... .......... 459 TCGATCAGGA TCAGACGTTG AGTATACTAA CTATGCTCTC TGTATAGAGA GACGGATTTA 18436 .......... .......... .......... .......... .......... .......... 459 GAATTCTAAG TCAAAATTAG TGTTAAGAAC ATGTCACCCA CTACTCGTTT GTAACTATGA 18496 .......... .......... .......... .......... .......... .......... 459 GTGTTGACTC ACTATAAATA TTTATATCAA CTAGTTGAGA TCACGCTATA TAAAATCTTG 18556 .......... .......... .......... .......... .......... .......... 459 TGTATATATA TATATATGTT AGAAGGATTT AAGGTCATAC ATCGTCAGTG TATAATTTAA 18616 .......... .......... .......... .......... .......... .......... 459 TTTTCGTTGT AAAAATGTAC AGATTCACTG TGGGATTGGT GATGTTATTT AGAGGTGTGA 18676 | |||| .......... .......... .......... .......... .......... ..A-CTGTGG 466 AGGCAAATGA GCATTGCGAT TGGTGTCGTT ATTTAAGCTG TTTGCGTACA TCAAGATGGA 18736 || AG........ .......... .......... .......... .......... .......... 468 ACTGTGAAAA TTAACTGAAG AGCTTTATGT AATTCTGTCC TCCTTTTTAC ATTAGACCAA 18796 .......... .......... .......... .......... .......... .......... 468 AAAAAAAAAA ACATATAGTT ACGTATATTA CTTTTATATG TATAGTGATT GTTGGTTTTG 18856 .......... .......... .......... .......... .......... .......... 468 TAATTTGTGG TATGGATCAT ATATTGTAAA TCTGTTATAC TATTTGCATT CGATCTATAT 18916 .......... .......... .......... .......... .......... .......... 468 TCTTTATGTT CAGAAAGGTA ACAAAAATAT ACGAAAGAAA ATCGAGTCTA CAAACTGTGG 18976 .......... .......... .......... .......... .......... .......... 468 CTGCCATAAA AAGGATGGCT AAAGAAATGG CTCCAGCTAT CATAATTTTA CCCATGTTTT 19036 .......... .......... .......... .......... .......... .......... 468 TAATTATGTA TTTTTTTTTA TTATTATGAT GATGATTAAT GAAAAGATGT GAGATGTTTG 19096 .......... .......... .......... .......... .......... .......... 468 TTTTATGGAA ATGAACAGAA TTTATAGGGG ATTAAAAGGG TTGCATGTTA AGTACGTGGA 19156 .......... .......... .......... .......... .......... .......... 468 AGGGGAAATT TTTATAGATT TTGGCAGCTG GAGATATGGT GTCTTCTTCT GCATGTTGTT 19216 .......... .......... .......... .......... .......... .......... 468 ATGTTTTTAT CTTCCTTTTT ACTTTTAGTA GTGGAGTCAA AAGTTTTACA AACATGTAAA 19276 .......... .......... .......... .......... .......... .......... 468 AATAATTCAA TATCGCAGTT AAAAATTTCA GACGAGTATC CTAAGCATTT GCTCTTTCAA 19336 .......... .......... .......... .......... .......... .......... 468 GCCTGAAGGT GTCTAATATC ACTGCGCTGC AATACCTTAT TCTATCAAAA ATGTCTAAAA 19396 .......... .......... .......... .......... .......... .......... 468 TAAATTATTT AATCATTTCA TATATTAGTT TATATATATA TATATATATA TATATATATA 19456 .......... .......... .......... .......... .......... .......... 468 TATATATATA TATCACTTGA TTTGATTGGA GGTATATAGG AAAAATTATG TAGATTGAGT 19516 .......... .......... .......... .......... .......... .......... 468 GTCTTTTAAT AAATAATTAT TGATTTTAGC GATACTTTCT ATTTATTTCA TTTATAACAA 19576 .......... .......... .......... .......... .......... .......... 468 AAGCGATACT TTCTATTTAT TTCATTTGTA ACAAAACTAT GTTAGATTTT AGCGATAATT 19636 .......... .......... .......... .......... .......... .......... 468 TCTATTAATT TTCATTTATA ACAAAACTAT GTTAAATCTG CAATATATAT TAAAAGTGAA 19696 .......... .......... .......... .......... .......... .......... 468 TTAAGTATGT AATATATATG TATTATAATT ATTTTTAAAA ATATATTATA CTTGTTTGAT 19756 .......... .......... .......... .......... .......... .......... 468 AAGAAGCATA ATAAATGTAT TATCTATTAA TAAAATTTGT ATTATATGTT AATAATAAAT 19816 .......... .......... .......... .......... .......... .......... 468 TGTTCTTTGT AATATGTAGT AAAATTGTAT TATAAAAGAA TATAAAAAGT GATCAAGTGA 19876 .......... .......... .......... .......... .......... .......... 468 AAAAAAGTGT TACTATTATA AATAATAAAT ACTTTTTATT TATAATATAT TTATGTAAAT 19936 .......... .......... .......... .......... .......... .......... 468 TTTCCCATCT TTATTTGCTT ATGATGATTT TGTAACACTT CCAACTTAAA ATAAGGAGAT 19996 .......... .......... .......... .......... .......... .......... 468 TCACATTAAA AATAGAGAAA AGATATTGTA TATATAAATA AGCTGACATT ATATAATAGT 20056 .......... .......... .......... .......... .......... .......... 468 GATACTTTTT ATAGTTGTCA GATTTAGATG ACAATATCAC CTGCAGATTT AGCCATTACA 20116 .......... .......... .......... .......... .......... .......... 468 AATTTCCTCG TCAAATCAAA CTTCAAAACA CATAATATTA CTAACGAATT GTTCCATTAT 20176 .......... .......... .......... .......... .......... .......... 468 TATAATTGTT AGTTTTAGAT TCAAAGCGGA CAATATAACT GAAGCTAAGC ACTTTTCATC 20236 .......... .......... .......... .......... .......... .......... 468 TTTTGTAGGA AAATTCCCTT CTCTAGTTTT GGGAAGCCTT CGGCCGTGAG AGGGCTGAAA 20296 .......... .......... .......... .......... .......... .......... 468 AGGAAGCTCG AACGAAGTGA GAGGGTGGAT GTAATTCAGC TCGAACGAAT AGTCATTACA 20356 .......... .......... .......... .......... .......... .......... 468 AATTTCCTCG TCAAATCAAA CTTTACAAAT TTCCTCGTCA AATCAAACTT CAAAACAGAC 20416 .......... .......... .......... .......... .......... .......... 468 AATATCACCG TTATTGATTC CCTCGTCAAA TTGAACACTA GGAACAATGG AAGAGCATTG 20476 .......... .......... .......... .......... .......... .......... 468 CCTTTTATCT CCTTTCACTC TTTCGTTTAA TTATTGAACA TTATCTTTAG ATTTGAATTT 20536 .......... .......... .......... .......... .......... .......... 468 TAACTATTCG GTATATTTAT TTTGTTTATT ATCACTTAAT AAATCTGAAT AATAATCCAG 20596 .......... .......... .......... .......... .......... .......... 468 ATTTATGGTA ATTTTTGCCA TAATAGAACG ATCTTATTCA CGGGTACAAG CAACGTGCAA 20656 .......... .......... .......... .......... .......... .......... 468 TGAGAGAAAA ATCACACCAG AAGGTGTGAT TTTATTTTAT TACTACGATC GAGTTTTACA 20716 .......... .......... .......... .......... .......... .......... 468 ACAACTAGAT CATTTATTTA TTTATAAGCG AACGCAGGCT TACAAATAAT TTTTGCAAAT 20776 .......... .......... .......... .......... .......... .......... 468 TAAAAGAAGC TGCGAACAGT TTGGATCTCA CATCGTTGTG GGCTAAGTCT ACATAAACCA 20836 .......... .......... .......... .......... .......... .......... 468 GGCAAATTCT CTGCAGTTTG AAGCATCTGT TGCCTTTGTC TTCCTTGAAC TTTCCCGGTT 20896 .......... .......... .......... .......... .......... .......... 468 TGTTCCTCTT GTTGAACCAC TTTCATGAGT CCCTCGCAAC GGCATTGTGG GTCTTGTATC 20956 .......... .......... .......... .......... .......... .......... 468 TGTTCAAGCT GATTGCAACA TTGTTGAACA TCACGAGGAA TCTGTTGGTC CTCGTACTGC 21016 .......... .......... .......... .......... .......... .......... 468 TGGCTCCTCT GCCTTAGAAA CTGCTGGCAT GAACGTAGCT GCTGTGCCTG TATTTTTTGT 21076 .......... .......... .......... .......... .......... .......... 468 TATATAAGCA AAAACATACC ATATCGTAAT CCCAATTTAC GTGATACTTT TCTTTTTTCA 21136 .......... .......... .......... .......... .......... .......... 468 AAGATCAAGC GGTTTAAATT TATCAGAATA TGTGCATGAA ATCTTTAAAT TTTGTGAATT 21196 .......... .......... .......... .......... .......... .......... 468 GAAATATATA GAGGTACTTA AACTTGTACT GTCAATCTTT AACTTTGGAT TTGTATAAAT 21256 .......... .......... .......... .......... .......... .......... 468 ACAAACTTAA ATTTGTATAA AATTGAACAA TAAACACATT CGTTCGGCGT GACATCCTAG 21316 .......... .......... .......... .......... .......... .......... 468 ATGACAATTA ACATAACATC CTAACTGTAT TATGCCATGA ACGAAGGACA TTTTTGTCTA 21376 .......... .......... .......... .......... .......... .......... 468 TTTATTTAAT TTTATAAAAA TTTAAGTGTT TATTTATAGA CTTAAAATTA AAATGCATAG 21436 .......... .......... .......... .......... .......... .......... 468 TTATCTGTTG AAATCAAGTT AAAGGTCATG TTTATATAAT ATGCCTTTAA AATATTTGTA 21496 .......... .......... .......... .......... .......... .......... 468 AAAGATATAT AAAAAATTAG AATTAAAAGA TTTACTTGAA TTTCATAACT AAAAAAAATT 21556 .......... .......... .......... .......... .......... .......... 468 AATTAAAAAA GAAGGAAAAA AATGAAAAAT GTCACATAAA TCAAAAAGCG TAAAAGGGGG 21616 .......... .......... .......... .......... .......... .......... 468 GGGGGGGGGG GGGGAATTAG ATAAAATGAA AGCGAAACCT GTTGAAATTG CTGCTGGCAG 21676 .......... .......... .......... .......... .......... .......... 468 CTTTGAGTTT GAGGGTTAAG AGCATCTTCA GCAATGGTGA TGGTCATGAT ACGTGAGCTA 21736 .......... .......... .......... .......... .......... .......... 468 CAAACTGTGG CTGCCATGAA AAGGATGGCT AAAGAAATGG CTCCAACTAT CATAGTTTTA 21796 .......... .......... .......... .......... .......... .......... 468 CCCATGATTT TTAATTATAT ACTTCTCTTT TTTTGTTATT ATGATGATGA TGATTAATGA 21856 .......... .......... .......... .......... .......... .......... 468 AAAGATGTGA GATGTTTATT CTATGAAAAT GAACTGAATT TATAGGGGAA TAAAGGGGTT 21916 .......... .......... .......... .......... .......... .......... 468 GCATGTTAAG TACGTGGCTG AGGAAAATTT ATAGGTTTTG GCAGGTGGAA ATATGGTGTC 21976 .......... .......... .......... .......... .......... .......... 468 TTCTTTTGCA TGTTGTGATG TTTTTATCTT CCTTGCTTAC ACGTAAGGAG GGAGGGTAGA 22036 .......... .......... .......... .......... .......... .......... 468 GTCTGATAGG ATTGAAGGGT TTATTTGATT TTTTTGATAA ATGAATTATA TTGTTTATAT 22096 .......... .......... .......... .......... .......... .......... 468 ATATAAAGAA AAAGAGTCGA TGTTAGGACC CTCTTAATCA AAAGCTGAGC TAGGTGATTT 22156 .......... .......... .......... .......... .......... .......... 468 ATAGGTTTGT ATGAATTCAG TAAAAAAAAT TTTTTGTAGA TTGTATATGT ACTAGAAAAT 22216 .......... .......... .......... .......... .......... .......... 468 CTTGATAGTA ATTTACAAGA TACGTGTATT TTATATTTAG GATTCAAATT CAAGATCTCT 22276 .......... .......... .......... .......... .......... .......... 468 GGCCATTAAT GAAGCGGTTT TTGATATGTT TATTTAAATT TTTCCTTATA TTCAGAACAC 22336 .......... .......... .......... .......... .......... .......... 468 CAACTTAATA CCTCTGATTA AGAGTGAAAT TTTACTAAGG GCAACTTTCA CATATAGCAA 22396 || || | ||||| |||||||||| | |||||||| .......... .......... .......CAT TTAATTAAGG GCAACTTTCA CGTATAGCAA 501 ATAAAAAATT TATATTTGTA TGCTATAGCA AAGTTTGCAT AATTGCGCTC CATAACAAAC 22456 |||||||||| ||||||||| || |||| || |||||||||| |||||||||| |||| |||| ATAAAAAATT CATATTTGTA TGTTATAACA AAGTTTGCAT AATTGCGCTC CATAGCAAAA 561 ATAGAAACTA TATAA 22471 | | ||| | | || AAAAAAAAAA AAAAA 576 hqPGS_C08HBa0197J17.1+_SGN-E378080- (22364 22471) ******************************************************************************** EST sequence 79 -strand 680 n (File: SGN-E379427-) 1 AAAACTTGCA AAACGGAATG GGCCTATTCA CATCAGATCA AGTTTTGTTC ACAGACCAAA 61 GGTCTAAAGG TACTGTTAAT TTGTGGGCCA GTAATTCTAA AGTTTTTGAA ACCGCATTTG 121 TTAATGCGAT GACTAAATTG GGCCGAGTTG GTGTGAAGAC GGGTAAGAAT GGAAATATTC 181 GTATAGACTG TGGAGCATTT AATTAAGGGC AACTTTCACG TATAGCAAAT AAAAAATTCA 241 TATTTGTATG TTATAACAAA GTTTGCATAA TTGCGCTCCA TAGCAAACAT AAAACTGTAT 301 AATTCGCTAT ACATATACAA TTGTATAATT CGCTGGCCTA AATTGTATAA TTTGATGGCC 361 TATTTCGCTG CAATTGTATA ATTCGCTATC TTCATTCACT GCGATTGTGT AATGCACAAT 421 CGTATAAATC GCTGCTTATT TCGCTGCAAT ATTTTTATAA ATTTGCTTTG CATACCGTTG 481 AATCGAATTA AAATGTATGT ATATTGCATA ATTATAAGTG TATGGCAAGA ATATATATGT 541 TTTTGTCTCG CTTTATACAA AAACAAAAAC ACAATATATA CACTTCTGTT GTATAAAGTT 601 AGAGAAAATT GTATTTCACT GCAATTATAT AATTCACAAT TGTATAATTC GTTGCCCTTT 661 TTCTGAACAA TATTTGAAGT Predicted gene structure (within gDNA segment 19732 to 26698): Exon 1 22365 22492 ( 128 n); cDNA 197 323 ( 127 n); score: 0.922 MATCH C08HBa0197J17.1+ SGN-E379427- 0.922 128 0.188 C PGS_C08HBa0197J17.1+_SGN-E379427- (22365 22492) Alignment (genomic DNA sequence = upper lines): ATTTTACTAA GGGCAACTTT CACATATAGC AAATAAAAAA TTTATATTTG TATGCTATAG 22424 |||| | ||| |||||||||| ||| |||||| |||||||||| || ||||||| |||| |||| ATTTAATTAA GGGCAACTTT CACGTATAGC AAATAAAAAA TTCATATTTG TATGTTATAA 256 CAAAGTTTGC ATAATTGCGC TCCATAACAA ACATAGAAAC TATATAATTC GCTATACATA 22484 |||||||||| |||||||||| |||||| ||| ||||| |||| | |||||||| |||||||||| CAAAGTTTGC ATAATTGCGC TCCATAGCAA ACATA-AAAC TGTATAATTC GCTATACATA 315 TACAGTTG 22492 |||| ||| TACAATTG 323 hqPGS_C08HBa0197J17.1+_SGN-E379427- (22365 22492) ******************************************************************************** EST sequence 72 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 17145 to 25280): Exon 1 17755 17762 ( 8 n); cDNA 396 403 ( 8 n); score: 0.750 Intron 1 17763 22375 (4613 n); Pd: 0.733 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 22376 22477 ( 102 n); cDNA 404 504 ( 101 n); score: 0.922 Intron 2 22478 22866 ( 389 n); Pd: 0.000 (s: 0.92), Pa: 0.416 (s: 0) Exon 3 22867 22889 ( 23 n); cDNA 505 526 ( 22 n); score: 0.696 MATCH C08HBa0197J17.1+ SGN-E578389- 0.922 133 0.190 C PGS_C08HBa0197J17.1+_SGN-E578389- (17755 17762,22376 22477,22867 22889) Alignment (genomic DNA sequence = upper lines): AATTGGTGGC AGTGTTCTTT CTTGCCTTTT CATTCAAGGT AGCATCTCTG TTGGAGCTTC 17814 |||| || AATTAATG.. .......... .......... .......... .......... .......... 403 TGGTGCTCTA TTTGGACTTC TGGGAGCAAT GTTATCGGAG CTTCTTACTA ACTGGAGTAT 17874 .......... .......... .......... .......... .......... .......... 403 ATATACCAAT AAGGTATAAA CCCTGCTATT CTACTGTTAT TATTTGTGTT CTTTCCCCTG 17934 .......... .......... .......... .......... .......... .......... 403 TTGAGGAGGT TATTCGTTTT ATTTTATAAC ACGTTCTAAG TACTTAATTC CGGTACTAAT 17994 .......... .......... .......... .......... .......... .......... 403 TAATCTCATT TATACAGGCT GCAGCTCTTA TCACTCTCAT TATCATCATC GCGATTAACT 18054 .......... .......... .......... .......... .......... .......... 403 TAGCTGTTGG TCTTCTTCCT CATGTCGATA ACTATGCCCA TATTGGAGGT TTCATGGGTG 18114 .......... .......... .......... .......... .......... .......... 403 GTTTTCTTCT TGGCTTTGTT CTGCTACTAC GACCTCAGTT TGGTTGGCTC GAAAGGCAAC 18174 .......... .......... .......... .......... .......... .......... 403 ATCTTCCAGC TGAAGGTCGT CTCAAGTCCA AGTTCAAAGC TTACCAATAC GTCCTCCTGC 18234 .......... .......... .......... .......... .......... .......... 403 TGATTGCCTC GATTTTGTTG ATTGTCGGGT AAGCTCTCTC TCTGCTACGC CTAATCCTAC 18294 .......... .......... .......... .......... .......... .......... 403 ATTTGCCTTA CAGCAGCGTC TAGAAAATAA GTTAGAACGG TTGGTAACTT TTTCCTTTTT 18354 .......... .......... .......... .......... .......... .......... 403 TTAGCTCAGA TTAAATTATT CGTCGATCAG GATCAGACGT TGAGTATACT AACTATGCTC 18414 .......... .......... .......... .......... .......... .......... 403 TCTGTATAGA GAGACGGATT TAGAATTCTA AGTCAAAATT AGTGTTAAGA ACATGTCACC 18474 .......... .......... .......... .......... .......... .......... 403 CACTACTCGT TTGTAACTAT GAGTGTTGAC TCACTATAAA TATTTATATC AACTAGTTGA 18534 .......... .......... .......... .......... .......... .......... 403 GATCACGCTA TATAAAATCT TGTGTATATA TATATATATG TTAGAAGGAT TTAAGGTCAT 18594 .......... .......... .......... .......... .......... .......... 403 ACATCGTCAG TGTATAATTT AATTTTCGTT GTAAAAATGT ACAGATTCAC TGTGGGATTG 18654 .......... .......... .......... .......... .......... .......... 403 GTGATGTTAT TTAGAGGTGT GAAGGCAAAT GAGCATTGCG ATTGGTGTCG TTATTTAAGC 18714 .......... .......... .......... .......... .......... .......... 403 TGTTTGCGTA CATCAAGATG GAACTGTGAA AATTAACTGA AGAGCTTTAT GTAATTCTGT 18774 .......... .......... .......... .......... .......... .......... 403 CCTCCTTTTT ACATTAGACC AAAAAAAAAA AAACATATAG TTACGTATAT TACTTTTATA 18834 .......... .......... .......... .......... .......... .......... 403 TGTATAGTGA TTGTTGGTTT TGTAATTTGT GGTATGGATC ATATATTGTA AATCTGTTAT 18894 .......... .......... .......... .......... .......... .......... 403 ACTATTTGCA TTCGATCTAT ATTCTTTATG TTCAGAAAGG TAACAAAAAT ATACGAAAGA 18954 .......... .......... .......... .......... .......... .......... 403 AAATCGAGTC TACAAACTGT GGCTGCCATA AAAAGGATGG CTAAAGAAAT GGCTCCAGCT 19014 .......... .......... .......... .......... .......... .......... 403 ATCATAATTT TACCCATGTT TTTAATTATG TATTTTTTTT TATTATTATG ATGATGATTA 19074 .......... .......... .......... .......... .......... .......... 403 ATGAAAAGAT GTGAGATGTT TGTTTTATGG AAATGAACAG AATTTATAGG GGATTAAAAG 19134 .......... .......... .......... .......... .......... .......... 403 GGTTGCATGT TAAGTACGTG GAAGGGGAAA TTTTTATAGA TTTTGGCAGC TGGAGATATG 19194 .......... .......... .......... .......... .......... .......... 403 GTGTCTTCTT CTGCATGTTG TTATGTTTTT ATCTTCCTTT TTACTTTTAG TAGTGGAGTC 19254 .......... .......... .......... .......... .......... .......... 403 AAAAGTTTTA CAAACATGTA AAAATAATTC AATATCGCAG TTAAAAATTT CAGACGAGTA 19314 .......... .......... .......... .......... .......... .......... 403 TCCTAAGCAT TTGCTCTTTC AAGCCTGAAG GTGTCTAATA TCACTGCGCT GCAATACCTT 19374 .......... .......... .......... .......... .......... .......... 403 ATTCTATCAA AAATGTCTAA AATAAATTAT TTAATCATTT CATATATTAG TTTATATATA 19434 .......... .......... .......... .......... .......... .......... 403 TATATATATA TATATATATA TATATATATA TATATCACTT GATTTGATTG GAGGTATATA 19494 .......... .......... .......... .......... .......... .......... 403 GGAAAAATTA TGTAGATTGA GTGTCTTTTA ATAAATAATT ATTGATTTTA GCGATACTTT 19554 .......... .......... .......... .......... .......... .......... 403 CTATTTATTT CATTTATAAC AAAAGCGATA CTTTCTATTT ATTTCATTTG TAACAAAACT 19614 .......... .......... .......... .......... .......... .......... 403 ATGTTAGATT TTAGCGATAA TTTCTATTAA TTTTCATTTA TAACAAAACT ATGTTAAATC 19674 .......... .......... .......... .......... .......... .......... 403 TGCAATATAT ATTAAAAGTG AATTAAGTAT GTAATATATA TGTATTATAA TTATTTTTAA 19734 .......... .......... .......... .......... .......... .......... 403 AAATATATTA TACTTGTTTG ATAAGAAGCA TAATAAATGT ATTATCTATT AATAAAATTT 19794 .......... .......... .......... .......... .......... .......... 403 GTATTATATG TTAATAATAA ATTGTTCTTT GTAATATGTA GTAAAATTGT ATTATAAAAG 19854 .......... .......... .......... .......... .......... .......... 403 AATATAAAAA GTGATCAAGT GAAAAAAAGT GTTACTATTA TAAATAATAA ATACTTTTTA 19914 .......... .......... .......... .......... .......... .......... 403 TTTATAATAT ATTTATGTAA ATTTTCCCAT CTTTATTTGC TTATGATGAT TTTGTAACAC 19974 .......... .......... .......... .......... .......... .......... 403 TTCCAACTTA AAATAAGGAG ATTCACATTA AAAATAGAGA AAAGATATTG TATATATAAA 20034 .......... .......... .......... .......... .......... .......... 403 TAAGCTGACA TTATATAATA GTGATACTTT TTATAGTTGT CAGATTTAGA TGACAATATC 20094 .......... .......... .......... .......... .......... .......... 403 ACCTGCAGAT TTAGCCATTA CAAATTTCCT CGTCAAATCA AACTTCAAAA CACATAATAT 20154 .......... .......... .......... .......... .......... .......... 403 TACTAACGAA TTGTTCCATT ATTATAATTG TTAGTTTTAG ATTCAAAGCG GACAATATAA 20214 .......... .......... .......... .......... .......... .......... 403 CTGAAGCTAA GCACTTTTCA TCTTTTGTAG GAAAATTCCC TTCTCTAGTT TTGGGAAGCC 20274 .......... .......... .......... .......... .......... .......... 403 TTCGGCCGTG AGAGGGCTGA AAAGGAAGCT CGAACGAAGT GAGAGGGTGG ATGTAATTCA 20334 .......... .......... .......... .......... .......... .......... 403 GCTCGAACGA ATAGTCATTA CAAATTTCCT CGTCAAATCA AACTTTACAA ATTTCCTCGT 20394 .......... .......... .......... .......... .......... .......... 403 CAAATCAAAC TTCAAAACAG ACAATATCAC CGTTATTGAT TCCCTCGTCA AATTGAACAC 20454 .......... .......... .......... .......... .......... .......... 403 TAGGAACAAT GGAAGAGCAT TGCCTTTTAT CTCCTTTCAC TCTTTCGTTT AATTATTGAA 20514 .......... .......... .......... .......... .......... .......... 403 CATTATCTTT AGATTTGAAT TTTAACTATT CGGTATATTT ATTTTGTTTA TTATCACTTA 20574 .......... .......... .......... .......... .......... .......... 403 ATAAATCTGA ATAATAATCC AGATTTATGG TAATTTTTGC CATAATAGAA CGATCTTATT 20634 .......... .......... .......... .......... .......... .......... 403 CACGGGTACA AGCAACGTGC AATGAGAGAA AAATCACACC AGAAGGTGTG ATTTTATTTT 20694 .......... .......... .......... .......... .......... .......... 403 ATTACTACGA TCGAGTTTTA CAACAACTAG ATCATTTATT TATTTATAAG CGAACGCAGG 20754 .......... .......... .......... .......... .......... .......... 403 CTTACAAATA ATTTTTGCAA ATTAAAAGAA GCTGCGAACA GTTTGGATCT CACATCGTTG 20814 .......... .......... .......... .......... .......... .......... 403 TGGGCTAAGT CTACATAAAC CAGGCAAATT CTCTGCAGTT TGAAGCATCT GTTGCCTTTG 20874 .......... .......... .......... .......... .......... .......... 403 TCTTCCTTGA ACTTTCCCGG TTTGTTCCTC TTGTTGAACC ACTTTCATGA GTCCCTCGCA 20934 .......... .......... .......... .......... .......... .......... 403 ACGGCATTGT GGGTCTTGTA TCTGTTCAAG CTGATTGCAA CATTGTTGAA CATCACGAGG 20994 .......... .......... .......... .......... .......... .......... 403 AATCTGTTGG TCCTCGTACT GCTGGCTCCT CTGCCTTAGA AACTGCTGGC ATGAACGTAG 21054 .......... .......... .......... .......... .......... .......... 403 CTGCTGTGCC TGTATTTTTT GTTATATAAG CAAAAACATA CCATATCGTA ATCCCAATTT 21114 .......... .......... .......... .......... .......... .......... 403 ACGTGATACT TTTCTTTTTT CAAAGATCAA GCGGTTTAAA TTTATCAGAA TATGTGCATG 21174 .......... .......... .......... .......... .......... .......... 403 AAATCTTTAA ATTTTGTGAA TTGAAATATA TAGAGGTACT TAAACTTGTA CTGTCAATCT 21234 .......... .......... .......... .......... .......... .......... 403 TTAACTTTGG ATTTGTATAA ATACAAACTT AAATTTGTAT AAAATTGAAC AATAAACACA 21294 .......... .......... .......... .......... .......... .......... 403 TTCGTTCGGC GTGACATCCT AGATGACAAT TAACATAACA TCCTAACTGT ATTATGCCAT 21354 .......... .......... .......... .......... .......... .......... 403 GAACGAAGGA CATTTTTGTC TATTTATTTA ATTTTATAAA AATTTAAGTG TTTATTTATA 21414 .......... .......... .......... .......... .......... .......... 403 GACTTAAAAT TAAAATGCAT AGTTATCTGT TGAAATCAAG TTAAAGGTCA TGTTTATATA 21474 .......... .......... .......... .......... .......... .......... 403 ATATGCCTTT AAAATATTTG TAAAAGATAT ATAAAAAATT AGAATTAAAA GATTTACTTG 21534 .......... .......... .......... .......... .......... .......... 403 AATTTCATAA CTAAAAAAAA TTAATTAAAA AAGAAGGAAA AAAATGAAAA ATGTCACATA 21594 .......... .......... .......... .......... .......... .......... 403 AATCAAAAAG CGTAAAAGGG GGGGGGGGGG GGGGGGAATT AGATAAAATG AAAGCGAAAC 21654 .......... .......... .......... .......... .......... .......... 403 CTGTTGAAAT TGCTGCTGGC AGCTTTGAGT TTGAGGGTTA AGAGCATCTT CAGCAATGGT 21714 .......... .......... .......... .......... .......... .......... 403 GATGGTCATG ATACGTGAGC TACAAACTGT GGCTGCCATG AAAAGGATGG CTAAAGAAAT 21774 .......... .......... .......... .......... .......... .......... 403 GGCTCCAACT ATCATAGTTT TACCCATGAT TTTTAATTAT ATACTTCTCT TTTTTTGTTA 21834 .......... .......... .......... .......... .......... .......... 403 TTATGATGAT GATGATTAAT GAAAAGATGT GAGATGTTTA TTCTATGAAA ATGAACTGAA 21894 .......... .......... .......... .......... .......... .......... 403 TTTATAGGGG AATAAAGGGG TTGCATGTTA AGTACGTGGC TGAGGAAAAT TTATAGGTTT 21954 .......... .......... .......... .......... .......... .......... 403 TGGCAGGTGG AAATATGGTG TCTTCTTTTG CATGTTGTGA TGTTTTTATC TTCCTTGCTT 22014 .......... .......... .......... .......... .......... .......... 403 ACACGTAAGG AGGGAGGGTA GAGTCTGATA GGATTGAAGG GTTTATTTGA TTTTTTTGAT 22074 .......... .......... .......... .......... .......... .......... 403 AAATGAATTA TATTGTTTAT ATATATAAAG AAAAAGAGTC GATGTTAGGA CCCTCTTAAT 22134 .......... .......... .......... .......... .......... .......... 403 CAAAAGCTGA GCTAGGTGAT TTATAGGTTT GTATGAATTC AGTAAAAAAA ATTTTTTGTA 22194 .......... .......... .......... .......... .......... .......... 403 GATTGTATAT GTACTAGAAA ATCTTGATAG TAATTTACAA GATACGTGTA TTTTATATTT 22254 .......... .......... .......... .......... .......... .......... 403 AGGATTCAAA TTCAAGATCT CTGGCCATTA ATGAAGCGGT TTTTGATATG TTTATTTAAA 22314 .......... .......... .......... .......... .......... .......... 403 TTTTTCCTTA TATTCAGAAC ACCAACTTAA TACCTCTGAT TAAGAGTGAA ATTTTACTAA 22374 .......... .......... .......... .......... .......... .......... 403 GGGCAACTTT CACATATAGC AAATAAAAAA TTTATATTTG TATGCTATAG CAAAGTTTGC 22434 ||||||||| |||||||| | ||| |||||| || ||||||| ||||||||| |||||||||| .GGCAACTTT CACATATAAC AAACAAAAAA TTCATATTTG TATGCTATAA CAAAGTTTGC 462 ATAATTGCGC TCCATAACAA ACATAGAAAC TATATAATTC GCTATACATA TACAGTTGAA 22494 |||||||||| |||||| ||| ||||| ||| | |||||||| ||| ATAATTGCGC TCCATAGCAA ACATA-AAAT TGTATAATTC GCT....... .......... 504 GCAAATTGTA TAAAACGAAG TGTATAAAAC AAGAAAGAGA AAGACACTTG GGCAAAGAAC 22554 .......... .......... .......... .......... .......... .......... 504 TATATAAAAA TGAAGTGTAT AAAACGAATT ATATTATTAT AAGTGTATAG AATGATTGTA 22614 .......... .......... .......... .......... .......... .......... 504 TACAATTTGA ATTTGTATAA AATGAGAAAA AGAGAAAGAC AAAAGAGACT TGACAAGAAA 22674 .......... .......... .......... .......... .......... .......... 504 TATACGATTG AATCGAATTT TATAAAACGA GAAAGAGAAA AATTGGATAC AATTTGAAAA 22734 .......... .......... .......... .......... .......... .......... 504 TTGTATAAAA CGAGAAAGAG AGAAAGACAA AAGAAGCAGG GGAGTATTTT TAATGTATAA 22794 .......... .......... .......... .......... .......... .......... 504 TTATAAATGT ATAGGACGAA AATATATGTC TTGCATGTGT ATATACAATT TTCTCACGCT 22854 .......... .......... .......... .......... .......... .......... 504 TTATACAAAC AGAAACGCAA TTTATATATT TCGCT 22889 || || || |||| | ||||| .......... ..-GACCTAA ATTGTATAAT TCGCT 526 hqPGS_C08HBa0197J17.1+_SGN-E578389- (22376 22477) ******************************************************************************** EST sequence 80 +strand 664 n (File: SGN-E551762+) 1 CATACTTTTT ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTA CTATAGCTGA 61 AAACCCATGG GAACAAATGT CTCAACGTTG CCAAATGGAA ATGCAAAGGG CACAGAATTT 121 ACGTGCTTGT GAAGAGTATT TAAGACAAAG TACAAAATTT ACTGAAGAGG GAAGATATAT 181 GGATCAACAA AGTGGAGACT GGCGCCAATC ATTCCCAAGG TGCTGCGAGC AAATGGAACA 241 GATGCAAGAC GAGCAATGTC GGTGCGAGGG AATAAAACAA GTGATGCAAC AAGAGCAACA 301 AAGAGGAGAA ATGCAGGGTA GAGAAATGCG TGAAGCTAGT AAAACTGCAC AGAGCCTTCC 361 TGGTTTATGC CGTATGAGTC CTCACCAATG CCATAATATT CCAACTCCAA CTTTCTATTA 421 AGTAATAATA ATTAATTATG AAAAATAGCA AAGCTTTAGT TAGCTTGCTT TTTTATTTTG 481 TAATAAAAAT AAAATGAAGT AGCAAGTACC TAAATAATGA ATAATTAATC ACCACATTAT 541 GGTGCCTGTG TTGTGTTTAC CAGGCAGCTT AATTTGGTGT GTTTGAAATG TTTTTGTCTA 601 ATTAATAATA AACTAGTCTT TTGCTTATTG GTAATATATT TTTTATTTCA TATTAAAAAA 661 AAAA Predicted gene structure (within gDNA segment 27126 to 23624): Exon 1 26526 26308 ( 219 n); cDNA 1 219 ( 219 n); score: 1.000 Intron 1 26307 24751 (1557 n); Pd: 0.999 (s: 1.00), Pa: 0.923 (s: 1.00) Exon 2 24750 24309 ( 442 n); cDNA 220 661 ( 442 n); score: 0.993 MATCH C08HBa0197J17.1- SGN-E551762+ 0.995 661 0.995 C PGS_C08HBa0197J17.1-_SGN-E551762+ (26526 26308,24750 24309) Alignment (genomic DNA sequence = upper lines): CATACTTTTT ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTA CTATAGCTGA 26467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACTTTTT ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTA CTATAGCTGA 60 AAACCCATGG GAACAAATGT CTCAACGTTG CCAAATGGAA ATGCAAAGGG CACAGAATTT 26407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCCATGG GAACAAATGT CTCAACGTTG CCAAATGGAA ATGCAAAGGG CACAGAATTT 120 ACGTGCTTGT GAAGAGTATT TAAGACAAAG TACAAAATTT ACTGAAGAGG GAAGATATAT 26347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGCTTGT GAAGAGTATT TAAGACAAAG TACAAAATTT ACTGAAGAGG GAAGATATAT 180 GGATCAACAA AGTGGAGACT GGCGCCAATC ATTCCCAAGG TATACATTCC TTCAATTCTT 26287 |||||||||| |||||||||| |||||||||| ||||||||| GGATCAACAA AGTGGAGACT GGCGCCAATC ATTCCCAAG. .......... .......... 219 TACTTACTAT AGGCGACTTA TTCTATTCAA CAACTGTCGT TTATTATATT AAAAATAGTG 26227 .......... .......... .......... .......... .......... .......... 219 GTTCAGTGAT ATTTATGTAG TCTTAAAAAA TTTAGAGATA ATTTATCTTT TGTGTCTATT 26167 .......... .......... .......... .......... .......... .......... 219 TTATTTTTGC TTTTAAATAT TTCTTCCGTC TCATTTTATA TGATATTTTT CGAATTTCGA 26107 .......... .......... .......... .......... .......... .......... 219 GAATCAAACA AATCTAATTT TGATCGTAAT TTTTTTCATA TATTTTTTAA ATATTTTGAA 26047 .......... .......... .......... .......... .......... .......... 219 ATTATCAATG GTTGTAACTT GTAGTAGTGC TCCATCCGTC CGAAAATATT TGTCATGTTG 25987 .......... .......... .......... .......... .......... .......... 219 TGCACTTGTG CACTTATCGA AAGTTATTTT AATTAATTTT TAAAGATAAA GTTAGATCAC 25927 .......... .......... .......... .......... .......... .......... 219 ATTGATTCGA TATTTAAAAA AAAATATTCT AAAACTATAT GAAAAGTACT ATAAGTTACA 25867 .......... .......... .......... .......... .......... .......... 219 GTATTTTGCA TATTAATATG ATTGAAAAAA TGCTATCTTA AAATGTTAGT CAAATTTTTT 25807 .......... .......... .......... .......... .......... .......... 219 ATAGTTTGAC TTTTAAAAAT AGAAATCATG ATAAACAATA CAGAATGGAG GAAGTATTTT 25747 .......... .......... .......... .......... .......... .......... 219 ACAAATATAT AGATTTCAAT TTAAAAAGAT TGAAGATTTC ATGCTTAAAT TTCTGGTCAA 25687 .......... .......... .......... .......... .......... .......... 219 ATTTAAAAAA TTTGATTCTC GATAAATAAA AAATGTCATA TAATTAGGGA TAGATAGACT 25627 .......... .......... .......... .......... .......... .......... 219 ACTATTTATC ATCTAACATT CAAAACATTA AATCTATTGA AATTAAATGT TAATATAATA 25567 .......... .......... .......... .......... .......... .......... 219 ATATTATCTA CATTATTTAT TATTTCTTAA AAGATGTGTC AAGTTAAGAC GACTATTATT 25507 .......... .......... .......... .......... .......... .......... 219 GAATAGAGGG AGCAGAGGGA GTAGAAGTCT TTATACTTTT TTTGTCCAAC AATAATTATC 25447 .......... .......... .......... .......... .......... .......... 219 CATTATACTA AAAATATTTG GTCTAAATTA GAAAATCAAT ACATAATTTA CTTTTTTGTT 25387 .......... .......... .......... .......... .......... .......... 219 TGTGTCTATT TTACTTTATC CTTCTATCAA ATATCGTCTT TTTTAAAAAA AGATGACCTA 25327 .......... .......... .......... .......... .......... .......... 219 GTTTGACTTG AAACGGAGTT TAAGAAAAAA AAAGAAGACT TTTAATTTCG TGATTTTAAA 25267 .......... .......... .......... .......... .......... .......... 219 TTAAAGTTAT GTCAAATAAA ACAAAATGTT CTTTAATTTT GTGATTTTAG ACATGTCACG 25207 .......... .......... .......... .......... .......... .......... 219 TGAAAAGTTA AAATTTTCTA AAAAAGAGAA AAGGGAAGGG TTCATTCTTT TTGAAATAAA 25147 .......... .......... .......... .......... .......... .......... 219 TTTAAAAATA AATAGAGATA TTCTTTTAGA AATAAATTTA AAAATAAATA GAGATATTCT 25087 .......... .......... .......... .......... .......... .......... 219 TTTAAACGAA GGGAGTGCTA TTTTTCAAAA CATAAAATTT ATTTAATAAA ACCAATGAGC 25027 .......... .......... .......... .......... .......... .......... 219 AAAATAGTAA TAGTACTCGT ATTGTTTATT CTGTGGGTAT GTCAAGTTGA CAGTGAAATA 24967 .......... .......... .......... .......... .......... .......... 219 TTATGGTTGG ACGGAGAGAA TATTAAACGT ATTGTTTATT GTGTGGGTAT GTCAAGTTGA 24907 .......... .......... .......... .......... .......... .......... 219 CAGTGAAATA TTATTGTTGG ACGGAGAGAA TATTAATATC TTTCTCGATA CAAGACATAT 24847 .......... .......... .......... .......... .......... .......... 219 ATTAATATCT TTCTCGATAC AAGACATATA GTAATTTTAA TACATAAGTC AACATCTTGA 24787 .......... .......... .......... .......... .......... .......... 219 TACATTGCGT CACCGTAATT CGATGAAAAT GGACAGGTGC TGCGAGCAAA TGGAACAGAT 24727 |||| |||||||||| |||||||||| .......... .......... .......... ......GTGC TGCGAGCAAA TGGAACAGAT 243 GCAAGACGAG CAATGTCGGT GCGAGGGAAT AAAACAAGTG ATGCAACAAG AGCAACAAAG 24667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGACGAG CAATGTCGGT GCGAGGGAAT AAAACAAGTG ATGCAACAAG AGCAACAAAG 303 AGGAGAAATG CAGGGTAGAG AAATGCGTGA AGCTAGTAAA ACTGCACAGA GCCTTCCTGG 24607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAATG CAGGGTAGAG AAATGCGTGA AGCTAGTAAA ACTGCACAGA GCCTTCCTGG 363 TTTATGCCGT ATGAGTCCTC ACCAATGCCA TAATATTCCA ACTCCAACTT TCTATTAAGT 24547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGCCGT ATGAGTCCTC ACCAATGCCA TAATATTCCA ACTCCAACTT TCTATTAAGT 423 AATAATAATT AATTATGAAA AATAGCAAAG CTTTAGTTAG CTTGCTTTTT TATTTTGTAA 24487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATAATT AATTATGAAA AATAGCAAAG CTTTAGTTAG CTTGCTTTTT TATTTTGTAA 483 TAAAAATAAA ATGAAGTAGC AAGTACCTAA ATAATGAATA ATTAATCACC ACATTATGGT 24427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAATAAA ATGAAGTAGC AAGTACCTAA ATAATGAATA ATTAATCACC ACATTATGGT 543 GCCTGTGTTG TGTTTACCAG GCAGCTTAAT TTGGTGTGTT TGAAATGTTT TTGTCTAATT 24367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTGTGTTG TGTTTACCAG GCAGCTTAAT TTGGTGTGTT TGAAATGTTT TTGTCTAATT 603 AATAATAAAC TAGTCTTTTG CTTATTGGTA ATATATTTTT TATTTCATAT TAATTGAA 24309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| || AATAATAAAC TAGTCTTTTG CTTATTGGTA ATATATTTTT TATTTCATAT TAAAAAAA 661 hqPGS_C08HBa0197J17.1-_SGN-E551762+ (26526 26308,24750 24309) ******************************************************************************** EST sequence 88 +strand 664 n (File: SGN-E553955+) 1 CATACTTTTT ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTA CTATAGCTGA 61 AAACCCATGG GAACAAATGT CTCAACGTTG CCAAATGGAA ATGCAAAGGG CACAGAATTT 121 ACGTGCTTGT GAAGAGTATT TAAGACAAAG TACAAAATTT ACTGAAGAGG GAAGATATAT 181 GGATCAACAA AGTGGAGACT GGCGCCAATC ATTCCCAAGG TGCTGCGAGC AAATGGAACA 241 GATGCAAGAC GAGCAATGTC GGTGCGAGGG AATAAAACAA GTGATGCAAC AAGAGCAACA 301 AAGAGGAGAA ATGCAGGGTA GAGAAATGCG TGAAGCTAGT AAAACTGCAC AGAGCCTTCC 361 TGGTTTATGC CGTATGAGTC CTCACCAATG CCATAATATT CCAACTCCAA CTTTCTATTA 421 AGTAATAATA ATTAATTATG AAAAATAGCA AAGCTTTAGT TAGCTTGCTT TTTTATTTTG 481 TAATAAAAAT AAAATGAAGT AGCAAGTACC TAAATAATGA ATAATTAATC ACCACATTAT 541 GGTGCCTGTG TTGTGTTTAC CAGGCAGCTT AATTTGGTGT GTTTGAAATG TTTTTGTCTA 601 ATTAATAATA AACTAGTCTT TTGCTTATTG GTAATATATT TTTTATTTCA TATTAAAAAA 661 AAAA Predicted gene structure (within gDNA segment 27126 to 23624): Exon 1 26526 26308 ( 219 n); cDNA 1 219 ( 219 n); score: 1.000 Intron 1 26307 24751 (1557 n); Pd: 0.999 (s: 1.00), Pa: 0.923 (s: 1.00) Exon 2 24750 24309 ( 442 n); cDNA 220 661 ( 442 n); score: 0.993 MATCH C08HBa0197J17.1- SGN-E553955+ 0.995 661 0.995 C PGS_C08HBa0197J17.1-_SGN-E553955+ (26526 26308,24750 24309) Alignment (genomic DNA sequence = upper lines): CATACTTTTT ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTA CTATAGCTGA 26467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACTTTTT ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTA CTATAGCTGA 60 AAACCCATGG GAACAAATGT CTCAACGTTG CCAAATGGAA ATGCAAAGGG CACAGAATTT 26407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCCATGG GAACAAATGT CTCAACGTTG CCAAATGGAA ATGCAAAGGG CACAGAATTT 120 ACGTGCTTGT GAAGAGTATT TAAGACAAAG TACAAAATTT ACTGAAGAGG GAAGATATAT 26347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGCTTGT GAAGAGTATT TAAGACAAAG TACAAAATTT ACTGAAGAGG GAAGATATAT 180 GGATCAACAA AGTGGAGACT GGCGCCAATC ATTCCCAAGG TATACATTCC TTCAATTCTT 26287 |||||||||| |||||||||| |||||||||| ||||||||| GGATCAACAA AGTGGAGACT GGCGCCAATC ATTCCCAAG. .......... .......... 219 TACTTACTAT AGGCGACTTA TTCTATTCAA CAACTGTCGT TTATTATATT AAAAATAGTG 26227 .......... .......... .......... .......... .......... .......... 219 GTTCAGTGAT ATTTATGTAG TCTTAAAAAA TTTAGAGATA ATTTATCTTT TGTGTCTATT 26167 .......... .......... .......... .......... .......... .......... 219 TTATTTTTGC TTTTAAATAT TTCTTCCGTC TCATTTTATA TGATATTTTT CGAATTTCGA 26107 .......... .......... .......... .......... .......... .......... 219 GAATCAAACA AATCTAATTT TGATCGTAAT TTTTTTCATA TATTTTTTAA ATATTTTGAA 26047 .......... .......... .......... .......... .......... .......... 219 ATTATCAATG GTTGTAACTT GTAGTAGTGC TCCATCCGTC CGAAAATATT TGTCATGTTG 25987 .......... .......... .......... .......... .......... .......... 219 TGCACTTGTG CACTTATCGA AAGTTATTTT AATTAATTTT TAAAGATAAA GTTAGATCAC 25927 .......... .......... .......... .......... .......... .......... 219 ATTGATTCGA TATTTAAAAA AAAATATTCT AAAACTATAT GAAAAGTACT ATAAGTTACA 25867 .......... .......... .......... .......... .......... .......... 219 GTATTTTGCA TATTAATATG ATTGAAAAAA TGCTATCTTA AAATGTTAGT CAAATTTTTT 25807 .......... .......... .......... .......... .......... .......... 219 ATAGTTTGAC TTTTAAAAAT AGAAATCATG ATAAACAATA CAGAATGGAG GAAGTATTTT 25747 .......... .......... .......... .......... .......... .......... 219 ACAAATATAT AGATTTCAAT TTAAAAAGAT TGAAGATTTC ATGCTTAAAT TTCTGGTCAA 25687 .......... .......... .......... .......... .......... .......... 219 ATTTAAAAAA TTTGATTCTC GATAAATAAA AAATGTCATA TAATTAGGGA TAGATAGACT 25627 .......... .......... .......... .......... .......... .......... 219 ACTATTTATC ATCTAACATT CAAAACATTA AATCTATTGA AATTAAATGT TAATATAATA 25567 .......... .......... .......... .......... .......... .......... 219 ATATTATCTA CATTATTTAT TATTTCTTAA AAGATGTGTC AAGTTAAGAC GACTATTATT 25507 .......... .......... .......... .......... .......... .......... 219 GAATAGAGGG AGCAGAGGGA GTAGAAGTCT TTATACTTTT TTTGTCCAAC AATAATTATC 25447 .......... .......... .......... .......... .......... .......... 219 CATTATACTA AAAATATTTG GTCTAAATTA GAAAATCAAT ACATAATTTA CTTTTTTGTT 25387 .......... .......... .......... .......... .......... .......... 219 TGTGTCTATT TTACTTTATC CTTCTATCAA ATATCGTCTT TTTTAAAAAA AGATGACCTA 25327 .......... .......... .......... .......... .......... .......... 219 GTTTGACTTG AAACGGAGTT TAAGAAAAAA AAAGAAGACT TTTAATTTCG TGATTTTAAA 25267 .......... .......... .......... .......... .......... .......... 219 TTAAAGTTAT GTCAAATAAA ACAAAATGTT CTTTAATTTT GTGATTTTAG ACATGTCACG 25207 .......... .......... .......... .......... .......... .......... 219 TGAAAAGTTA AAATTTTCTA AAAAAGAGAA AAGGGAAGGG TTCATTCTTT TTGAAATAAA 25147 .......... .......... .......... .......... .......... .......... 219 TTTAAAAATA AATAGAGATA TTCTTTTAGA AATAAATTTA AAAATAAATA GAGATATTCT 25087 .......... .......... .......... .......... .......... .......... 219 TTTAAACGAA GGGAGTGCTA TTTTTCAAAA CATAAAATTT ATTTAATAAA ACCAATGAGC 25027 .......... .......... .......... .......... .......... .......... 219 AAAATAGTAA TAGTACTCGT ATTGTTTATT CTGTGGGTAT GTCAAGTTGA CAGTGAAATA 24967 .......... .......... .......... .......... .......... .......... 219 TTATGGTTGG ACGGAGAGAA TATTAAACGT ATTGTTTATT GTGTGGGTAT GTCAAGTTGA 24907 .......... .......... .......... .......... .......... .......... 219 CAGTGAAATA TTATTGTTGG ACGGAGAGAA TATTAATATC TTTCTCGATA CAAGACATAT 24847 .......... .......... .......... .......... .......... .......... 219 ATTAATATCT TTCTCGATAC AAGACATATA GTAATTTTAA TACATAAGTC AACATCTTGA 24787 .......... .......... .......... .......... .......... .......... 219 TACATTGCGT CACCGTAATT CGATGAAAAT GGACAGGTGC TGCGAGCAAA TGGAACAGAT 24727 |||| |||||||||| |||||||||| .......... .......... .......... ......GTGC TGCGAGCAAA TGGAACAGAT 243 GCAAGACGAG CAATGTCGGT GCGAGGGAAT AAAACAAGTG ATGCAACAAG AGCAACAAAG 24667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGACGAG CAATGTCGGT GCGAGGGAAT AAAACAAGTG ATGCAACAAG AGCAACAAAG 303 AGGAGAAATG CAGGGTAGAG AAATGCGTGA AGCTAGTAAA ACTGCACAGA GCCTTCCTGG 24607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAATG CAGGGTAGAG AAATGCGTGA AGCTAGTAAA ACTGCACAGA GCCTTCCTGG 363 TTTATGCCGT ATGAGTCCTC ACCAATGCCA TAATATTCCA ACTCCAACTT TCTATTAAGT 24547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGCCGT ATGAGTCCTC ACCAATGCCA TAATATTCCA ACTCCAACTT TCTATTAAGT 423 AATAATAATT AATTATGAAA AATAGCAAAG CTTTAGTTAG CTTGCTTTTT TATTTTGTAA 24487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATAATT AATTATGAAA AATAGCAAAG CTTTAGTTAG CTTGCTTTTT TATTTTGTAA 483 TAAAAATAAA ATGAAGTAGC AAGTACCTAA ATAATGAATA ATTAATCACC ACATTATGGT 24427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAATAAA ATGAAGTAGC AAGTACCTAA ATAATGAATA ATTAATCACC ACATTATGGT 543 GCCTGTGTTG TGTTTACCAG GCAGCTTAAT TTGGTGTGTT TGAAATGTTT TTGTCTAATT 24367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTGTGTTG TGTTTACCAG GCAGCTTAAT TTGGTGTGTT TGAAATGTTT TTGTCTAATT 603 AATAATAAAC TAGTCTTTTG CTTATTGGTA ATATATTTTT TATTTCATAT TAATTGAA 24309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| || AATAATAAAC TAGTCTTTTG CTTATTGGTA ATATATTTTT TATTTCATAT TAAAAAAA 661 hqPGS_C08HBa0197J17.1-_SGN-E553955+ (26526 26308,24750 24309) ******************************************************************************** EST sequence 108 +strand 587 n (File: SGN-E243182+) 1 GATTTTCACT ATGGTGGGTA AAGTAATAAT ATTTGGAGTT ACATGTTTAT CCATACTTTT 61 TATGGGAGTT ACTACAGCTA GTAGCTTTCG TACTACAATT TCTATAGCTG AAAACCCATG 121 GGAACAAATG TCTCAACGTT GCCAAATGGT AATGCAAAGG GCACAGAATT TACGTGCTTG 181 TGAAGAGTAT TTAAGACAAA GTTCAAAATT TACTGAAGAG GGAAGATATA TGGATCAACA 241 AACTGGAGAC TGTCGCCAAT CATTCCCAAG GTGCTGCGAG CAAATGGAAC AGATGCAAGA 301 CGAGCTATGT CGGTGCGAGG GAATAAAACA AGTGATGCAA CAAGAGCAAC AAAGATGAGA 361 AATGCAGGGT AGAGAAATGC GTGAAGCTAG TAAAACTGCT CAGAGCCCTC CTGGTTTATG 421 CCGTATGAGT CCTCACCAAT GCCATAATAT TCCAACTCCA ACTGTCTATT AAGTAATAAT 481 AATTAATTAT GAAAAATAGC AAAGCTTTAG TTAGCTTGCT TTTATATTTT GTAATAAAAA 541 TAAAATGAAG TAGCAAGTAC CTAAATAATG AATAATTAAT CACCACA Predicted gene structure (within gDNA segment 27186 to 23824): Exon 1 26576 26308 ( 269 n); cDNA 2 270 ( 269 n); score: 0.974 Intron 1 26307 24751 (1557 n); Pd: 0.999 (s: 0.96), Pa: 0.923 (s: 0.98) Exon 2 24750 24434 ( 317 n); cDNA 271 587 ( 317 n); score: 0.981 MATCH C08HBa0197J17.1- SGN-E243182+ 0.978 586 0.998 C PGS_C08HBa0197J17.1-_SGN-E243182+ (26576 26308,24750 24434) Alignment (genomic DNA sequence = upper lines): ATTTTCACTA TGGTGGGTAA AGTAATAATA TTTGGAGTAA CATGTTTAGC CATACTTTTT 26517 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||||||||| ATTTTCACTA TGGTGGGTAA AGTAATAATA TTTGGAGTTA CATGTTTATC CATACTTTTT 61 ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTA CTATAGCTGA AAACCCATGG 26457 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ATGGGAGTTA CTACAGCTAG TAGCTTTCGT ACTACAATTT CTATAGCTGA AAACCCATGG 121 GAACAAATGT CTCAACGTTG CCAAATGGAA ATGCAAAGGG CACAGAATTT ACGTGCTTGT 26397 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GAACAAATGT CTCAACGTTG CCAAATGGTA ATGCAAAGGG CACAGAATTT ACGTGCTTGT 181 GAAGAGTATT TAAGACAAAG TACAAAATTT ACTGAAGAGG GAAGATATAT GGATCAACAA 26337 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| GAAGAGTATT TAAGACAAAG TTCAAAATTT ACTGAAGAGG GAAGATATAT GGATCAACAA 241 AGTGGAGACT GGCGCCAATC ATTCCCAAGG TATACATTCC TTCAATTCTT TACTTACTAT 26277 | |||||||| | |||||||| ||||||||| ACTGGAGACT GTCGCCAATC ATTCCCAAG. .......... .......... .......... 270 AGGCGACTTA TTCTATTCAA CAACTGTCGT TTATTATATT AAAAATAGTG GTTCAGTGAT 26217 .......... .......... .......... .......... .......... .......... 270 ATTTATGTAG TCTTAAAAAA TTTAGAGATA ATTTATCTTT TGTGTCTATT TTATTTTTGC 26157 .......... .......... .......... .......... .......... .......... 270 TTTTAAATAT TTCTTCCGTC TCATTTTATA TGATATTTTT CGAATTTCGA GAATCAAACA 26097 .......... .......... .......... .......... .......... .......... 270 AATCTAATTT TGATCGTAAT TTTTTTCATA TATTTTTTAA ATATTTTGAA ATTATCAATG 26037 .......... .......... .......... .......... .......... .......... 270 GTTGTAACTT GTAGTAGTGC TCCATCCGTC CGAAAATATT TGTCATGTTG TGCACTTGTG 25977 .......... .......... .......... .......... .......... .......... 270 CACTTATCGA AAGTTATTTT AATTAATTTT TAAAGATAAA GTTAGATCAC ATTGATTCGA 25917 .......... .......... .......... .......... .......... .......... 270 TATTTAAAAA AAAATATTCT AAAACTATAT GAAAAGTACT ATAAGTTACA GTATTTTGCA 25857 .......... .......... .......... .......... .......... .......... 270 TATTAATATG ATTGAAAAAA TGCTATCTTA AAATGTTAGT CAAATTTTTT ATAGTTTGAC 25797 .......... .......... .......... .......... .......... .......... 270 TTTTAAAAAT AGAAATCATG ATAAACAATA CAGAATGGAG GAAGTATTTT ACAAATATAT 25737 .......... .......... .......... .......... .......... .......... 270 AGATTTCAAT TTAAAAAGAT TGAAGATTTC ATGCTTAAAT TTCTGGTCAA ATTTAAAAAA 25677 .......... .......... .......... .......... .......... .......... 270 TTTGATTCTC GATAAATAAA AAATGTCATA TAATTAGGGA TAGATAGACT ACTATTTATC 25617 .......... .......... .......... .......... .......... .......... 270 ATCTAACATT CAAAACATTA AATCTATTGA AATTAAATGT TAATATAATA ATATTATCTA 25557 .......... .......... .......... .......... .......... .......... 270 CATTATTTAT TATTTCTTAA AAGATGTGTC AAGTTAAGAC GACTATTATT GAATAGAGGG 25497 .......... .......... .......... .......... .......... .......... 270 AGCAGAGGGA GTAGAAGTCT TTATACTTTT TTTGTCCAAC AATAATTATC CATTATACTA 25437 .......... .......... .......... .......... .......... .......... 270 AAAATATTTG GTCTAAATTA GAAAATCAAT ACATAATTTA CTTTTTTGTT TGTGTCTATT 25377 .......... .......... .......... .......... .......... .......... 270 TTACTTTATC CTTCTATCAA ATATCGTCTT TTTTAAAAAA AGATGACCTA GTTTGACTTG 25317 .......... .......... .......... .......... .......... .......... 270 AAACGGAGTT TAAGAAAAAA AAAGAAGACT TTTAATTTCG TGATTTTAAA TTAAAGTTAT 25257 .......... .......... .......... .......... .......... .......... 270 GTCAAATAAA ACAAAATGTT CTTTAATTTT GTGATTTTAG ACATGTCACG TGAAAAGTTA 25197 .......... .......... .......... .......... .......... .......... 270 AAATTTTCTA AAAAAGAGAA AAGGGAAGGG TTCATTCTTT TTGAAATAAA TTTAAAAATA 25137 .......... .......... .......... .......... .......... .......... 270 AATAGAGATA TTCTTTTAGA AATAAATTTA AAAATAAATA GAGATATTCT TTTAAACGAA 25077 .......... .......... .......... .......... .......... .......... 270 GGGAGTGCTA TTTTTCAAAA CATAAAATTT ATTTAATAAA ACCAATGAGC AAAATAGTAA 25017 .......... .......... .......... .......... .......... .......... 270 TAGTACTCGT ATTGTTTATT CTGTGGGTAT GTCAAGTTGA CAGTGAAATA TTATGGTTGG 24957 .......... .......... .......... .......... .......... .......... 270 ACGGAGAGAA TATTAAACGT ATTGTTTATT GTGTGGGTAT GTCAAGTTGA CAGTGAAATA 24897 .......... .......... .......... .......... .......... .......... 270 TTATTGTTGG ACGGAGAGAA TATTAATATC TTTCTCGATA CAAGACATAT ATTAATATCT 24837 .......... .......... .......... .......... .......... .......... 270 TTCTCGATAC AAGACATATA GTAATTTTAA TACATAAGTC AACATCTTGA TACATTGCGT 24777 .......... .......... .......... .......... .......... .......... 270 CACCGTAATT CGATGAAAAT GGACAGGTGC TGCGAGCAAA TGGAACAGAT GCAAGACGAG 24717 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTGC TGCGAGCAAA TGGAACAGAT GCAAGACGAG 304 CAATGTCGGT GCGAGGGAAT AAAACAAGTG ATGCAACAAG AGCAACAAAG AGGAGAAATG 24657 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| CTATGTCGGT GCGAGGGAAT AAAACAAGTG ATGCAACAAG AGCAACAAAG ATGAGAAATG 364 CAGGGTAGAG AAATGCGTGA AGCTAGTAAA ACTGCACAGA GCCTTCCTGG TTTATGCCGT 24597 |||||||||| |||||||||| |||||||||| ||||| |||| ||| |||||| |||||||||| CAGGGTAGAG AAATGCGTGA AGCTAGTAAA ACTGCTCAGA GCCCTCCTGG TTTATGCCGT 424 ATGAGTCCTC ACCAATGCCA TAATATTCCA ACTCCAACTT TCTATTAAGT AATAATAATT 24537 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ATGAGTCCTC ACCAATGCCA TAATATTCCA ACTCCAACTG TCTATTAAGT AATAATAATT 484 AATTATGAAA AATAGCAAAG CTTTAGTTAG CTTGCTTTTT TATTTTGTAA TAAAAATAAA 24477 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AATTATGAAA AATAGCAAAG CTTTAGTTAG CTTGCTTTTA TATTTTGTAA TAAAAATAAA 544 ATGAAGTAGC AAGTACCTAA ATAATGAATA ATTAATCACC ACA 24434 |||||||||| |||||||||| |||||||||| |||||||||| ||| ATGAAGTAGC AAGTACCTAA ATAATGAATA ATTAATCACC ACA 587 hqPGS_C08HBa0197J17.1-_SGN-E243182+ (26576 26308,24750 24434) ******************************************************************************** EST sequence 53 -strand 553 n (File: SGN-E208987-) 1 AAAAAAATTA GATATTCTAA AACTATATGA AAAGTACTAT AAATTACAAC TTTTTGCATA 61 TTAATATGAT AAAAAAATGA TCTTAAAATA TTAGCAAAGT TTTTATAATT TAACTGTAAA 121 AATAGAAATA ACGACAAGTA TAATAAATTC AACTGGCTAT TATAATTTCA AAATGTAATT 181 TATTTCAGTA CAGTGCATCT ATTAATCATG ATAATTAATG AGATACATTA CAGAATACAC 241 GTAACTAAAA AGTTTATTTC CCAAAGCATG AAGATTTATT ATCAAAATAG ACAATAATAG 301 CCCATGGTGA TAATACACTT TTAGCATTTT TCAACCCTCA TTTCCATCAA TTTTGCTATC 361 TGGTCCGCAC CTAATGTTGC ACTTCCCATC ACAACGAGCG TATTCTCTCG GTGGGAGACC 421 AACACAAGCA GTATTGCAAC TGTCCCAGCA ATTGACACCC TGAGCTGCGA CGCCGACGAT 481 GTCGGTGTTG GCCGATAAAA GGATCAAAAA CACCAAAGCC ATAGCTGCCA CTGAATTCAT 541 TTTCTTGTTT TCC Predicted gene structure (within gDNA segment 26623 to 20415): Exon 1 25911 25783 ( 129 n); cDNA 4 127 ( 124 n); score: 0.860 Intron 1 25782 24276 (1507 n); Pd: 0.000 (s: 0.86), Pa: 0.582 (s: 0.55) Exon 2 24275 24235 ( 41 n); cDNA 128 168 ( 41 n); score: 0.549 Intron 2 24234 23795 ( 440 n); Pd: 0.599 (s: 0.55), Pa: 0.589 (s: 0) Exon 3 23794 23783 ( 12 n); cDNA 169 179 ( 11 n); score: 0.833 Intron 3 23782 21545 (2238 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62) Exon 4 21544 21505 ( 40 n); cDNA 180 219 ( 40 n); score: 0.625 MATCH C08HBa0197J17.1- SGN-E208987- 0.860 222 0.401 C PGS_C08HBa0197J17.1-_SGN-E208987- (25911 25783,24275 24235,23794 23783,21544 21505) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAT ATTCTAAAAC TATATGAAAA GTACTATAAG TTACAGTATT TTGCATATTA 25852 |||| | || |||||||||| |||||||||| ||||||||| ||||| || |||||||||| AAAATTAGAT ATTCTAAAAC TATATGAAAA GTACTATAAA TTACAACTTT TTGCATATTA 63 ATATGATTGA AAAAATGCTA TCTTAAAATG TTAGTCAAAT TTTTTATAGT TTGACTTTTA 25792 |||||| | | ||||||| | ||||||||| |||| |||| |||||||| | || || | || ATATGA-TAA AAAAATG--A TCTTAAAATA TTAG-CAAAG TTTTTATAAT TTAAC-TGTA 118 AAAATAGAAA TCATGATAAA CAATACAGAA TGGAGGAAGT ATTTTACAAA TATATAGATT 25732 ||||||||| AAAATAGAA. .......... .......... .......... .......... .......... 127 TCAATTTAAA AAGATTGAAG ATTTCATGCT TAAATTTCTG GTCAAATTTA AAAAATTTGA 25672 .......... .......... .......... .......... .......... .......... 127 TTCTCGATAA ATAAAAAATG TCATATAATT AGGGATAGAT AGACTACTAT TTATCATCTA 25612 .......... .......... .......... .......... .......... .......... 127 ACATTCAAAA CATTAAATCT ATTGAAATTA AATGTTAATA TAATAATATT ATCTACATTA 25552 .......... .......... .......... .......... .......... .......... 127 TTTATTATTT CTTAAAAGAT GTGTCAAGTT AAGACGACTA TTATTGAATA GAGGGAGCAG 25492 .......... .......... .......... .......... .......... .......... 127 AGGGAGTAGA AGTCTTTATA CTTTTTTTGT CCAACAATAA TTATCCATTA TACTAAAAAT 25432 .......... .......... .......... .......... .......... .......... 127 ATTTGGTCTA AATTAGAAAA TCAATACATA ATTTACTTTT TTGTTTGTGT CTATTTTACT 25372 .......... .......... .......... .......... .......... .......... 127 TTATCCTTCT ATCAAATATC GTCTTTTTTA AAAAAAGATG ACCTAGTTTG ACTTGAAACG 25312 .......... .......... .......... .......... .......... .......... 127 GAGTTTAAGA AAAAAAAAGA AGACTTTTAA TTTCGTGATT TTAAATTAAA GTTATGTCAA 25252 .......... .......... .......... .......... .......... .......... 127 ATAAAACAAA ATGTTCTTTA ATTTTGTGAT TTTAGACATG TCACGTGAAA AGTTAAAATT 25192 .......... .......... .......... .......... .......... .......... 127 TTCTAAAAAA GAGAAAAGGG AAGGGTTCAT TCTTTTTGAA ATAAATTTAA AAATAAATAG 25132 .......... .......... .......... .......... .......... .......... 127 AGATATTCTT TTAGAAATAA ATTTAAAAAT AAATAGAGAT ATTCTTTTAA ACGAAGGGAG 25072 .......... .......... .......... .......... .......... .......... 127 TGCTATTTTT CAAAACATAA AATTTATTTA ATAAAACCAA TGAGCAAAAT AGTAATAGTA 25012 .......... .......... .......... .......... .......... .......... 127 CTCGTATTGT TTATTCTGTG GGTATGTCAA GTTGACAGTG AAATATTATG GTTGGACGGA 24952 .......... .......... .......... .......... .......... .......... 127 GAGAATATTA AACGTATTGT TTATTGTGTG GGTATGTCAA GTTGACAGTG AAATATTATT 24892 .......... .......... .......... .......... .......... .......... 127 GTTGGACGGA GAGAATATTA ATATCTTTCT CGATACAAGA CATATATTAA TATCTTTCTC 24832 .......... .......... .......... .......... .......... .......... 127 GATACAAGAC ATATAGTAAT TTTAATACAT AAGTCAACAT CTTGATACAT TGCGTCACCG 24772 .......... .......... .......... .......... .......... .......... 127 TAATTCGATG AAAATGGACA GGTGCTGCGA GCAAATGGAA CAGATGCAAG ACGAGCAATG 24712 .......... .......... .......... .......... .......... .......... 127 TCGGTGCGAG GGAATAAAAC AAGTGATGCA ACAAGAGCAA CAAAGAGGAG AAATGCAGGG 24652 .......... .......... .......... .......... .......... .......... 127 TAGAGAAATG CGTGAAGCTA GTAAAACTGC ACAGAGCCTT CCTGGTTTAT GCCGTATGAG 24592 .......... .......... .......... .......... .......... .......... 127 TCCTCACCAA TGCCATAATA TTCCAACTCC AACTTTCTAT TAAGTAATAA TAATTAATTA 24532 .......... .......... .......... .......... .......... .......... 127 TGAAAAATAG CAAAGCTTTA GTTAGCTTGC TTTTTTATTT TGTAATAAAA ATAAAATGAA 24472 .......... .......... .......... .......... .......... .......... 127 GTAGCAAGTA CCTAAATAAT GAATAATTAA TCACCACATT ATGGTGCCTG TGTTGTGTTT 24412 .......... .......... .......... .......... .......... .......... 127 ACCAGGCAGC TTAATTTGGT GTGTTTGAAA TGTTTTTGTC TAATTAATAA TAAACTAGTC 24352 .......... .......... .......... .......... .......... .......... 127 TTTTGCTTAT TGGTAATATA TTTTTTATTT CATATTAATT GAATTTTTTT AGATTCTTTT 24292 .......... .......... .......... .......... .......... .......... 127 CCTTCTTCCA TTTAAGATAA C-ACGAGCGT TTGAATTTCT TACGTAATAT CATAAATGGT 24233 |||| | || || | || ||| || ||| |||| | .......... ......ATAA CGACAAGTAT AATAAATTC- AACTGGCTAT TATAATTT.. 168 AATAGTGAAA ATTATAATTT AAACTATATT ATTTCGTAAA TTCAGTTAAA TATGGAATAG 24173 .......... .......... .......... .......... .......... .......... 168 AGGGATTTAT GATTTCATAA ATTCAGTTAA ATATGGGATA GAGGGATTTA TGATTTCATA 24113 .......... .......... .......... .......... .......... .......... 168 AAATTATAAA TTGAATATAA TTTTTTTTAT AATGATGTAT TATTTCACAA ATTTAGTTAA 24053 .......... .......... .......... .......... .......... .......... 168 ATATGTAATA GAAGGAAGTA TGTTTTGAGG TGATTTAGGC ATTATTTGTT TTTATTATGA 23993 .......... .......... .......... .......... .......... .......... 168 TCAACAAGAT GATGTCTGAA TAATATGTGT GCATGTATTA AGATTTAGAT ATTTTAAATC 23933 .......... .......... .......... .......... .......... .......... 168 TTAATTTGAT ATTAAGATAT TTATGAAAAT TTAAATACTA GATGATTAAG ATATTTAGTA 23873 .......... .......... .......... .......... .......... .......... 168 TATTTAAATA GATAAATTTT GTCTTTTACC TAAAAATTGG TTAATATAAA TTTAATAATT 23813 .......... .......... .......... .......... .......... .......... 168 ACTAAATTAA TTTATCAGCA AAATATCAAT ATGATAGGGT ATCGAGGCGT ATTGGCACAG 23753 || |||| | ||| .......... ........CA AAATGT-AAT .......... .......... .......... 179 TGGTGGTTAT GAGTCTTGAT TAGGGATGCG ATTAGTATGT AAATGTATAT TGTGGATGAT 23693 .......... .......... .......... .......... .......... .......... 179 TATAGTGGTT AGCGATATTC AATGATAATG CTGATTGATA GTGAATGATG AACATTAATT 23633 .......... .......... .......... .......... .......... .......... 179 TGTCGCGATT TATTAATAAT TGTTATAGTA ATGGTGATTT GATGATGGAT TATAATATGA 23573 .......... .......... .......... .......... .......... .......... 179 TGTAGTAAAT GTCAACGAAA ATTAATATAT ATGGTTATAG AAATTTTTTC TCCGACGAAG 23513 .......... .......... .......... .......... .......... .......... 179 AAATGTTTGA CACTCTTTAG TATATGTAAC TCTTGTCAAC AAGTAATGAT AATTGATGAT 23453 .......... .......... .......... .......... .......... .......... 179 AAATGTTTAT GGTGATGAAT GTAAAATGTG TCTAATCGGT GATGATTATA GTAGTGATTA 23393 .......... .......... .......... .......... .......... .......... 179 ATTAATTGAT TAGTAGTGAT TAATTAATTG ATAAAATGAA CTACTAATGA TGATTAATTA 23333 .......... .......... .......... .......... .......... .......... 179 TAGTGATTAA AAGTTGACTA GTTGGTGATC ATAGATGGTT GTAATCAATA ATTGAAGGTA 23273 .......... .......... .......... .......... .......... .......... 179 CAAGCAATAG TGAATGGATG AAGTGTCCAA AATGAGTTAG TGGCAGTGAT TAGTAAATAG 23213 .......... .......... .......... .......... .......... .......... 179 GAAAATTATA TAGCAAACTA ATAATCTAAA ATAAATGGAG TAGCTCGGGT TTGATTTAAT 23153 .......... .......... .......... .......... .......... .......... 179 TGTACTCCAT AGTAAATGTA AAAAATTGTC AGGCGCCTCT CTTCCAAATA TCTAGCTCGC 23093 .......... .......... .......... .......... .......... .......... 179 CACTCTCCTC CAATCTCTCG CTCGCTTCCT CACTTTTTAT ATAAACACAA GTGTATAAAA 23033 .......... .......... .......... .......... .......... .......... 179 ATTGTTTCTA ATTGTATAAA GCAGAGAAAA TTATATAAAT ATATATATTT TTGTTCCCTT 22973 .......... .......... .......... .......... .......... .......... 179 CTCTCCCCTC CTCTTTCAGA TCTCGCTCGC CACTCCCCCA AATCTCGCTC GCCACCCTCG 22913 .......... .......... .......... .......... .......... .......... 179 CCTTTCTCAC TTATACAAAC AGAAGCGAAA TATATAAATT GCGTTTCTGT TTGTATAAAG 22853 .......... .......... .......... .......... .......... .......... 179 CGTGAGAAAA TTGTATATAC ACATGCAAGA CATATATTTT CGTCCTATAC ATTTATAATT 22793 .......... .......... .......... .......... .......... .......... 179 ATACATTAAA AATACTCCCC TGCTTCTTTT GTCTTTCTCT CTTTCTCGTT TTATACAATT 22733 .......... .......... .......... .......... .......... .......... 179 TTCAAATTGT ATCCAATTTT TCTCTTTCTC GTTTTATAAA ATTCGATTCA ATCGTATATT 22673 .......... .......... .......... .......... .......... .......... 179 TCTTGTCAAG TCTCTTTTGT CTTTCTCTTT TTCTCATTTT ATACAAATTC AAATTGTATA 22613 .......... .......... .......... .......... .......... .......... 179 CAATCATTCT ATACACTTAT AATAATATAA TTCGTTTTAT ACACTTCATT TTTATATAGT 22553 .......... .......... .......... .......... .......... .......... 179 TCTTTGCCCA AGTGTCTTTC TCTTTCTTGT TTTATACACT TCGTTTTATA CAATTTGCTT 22493 .......... .......... .......... .......... .......... .......... 179 CAACTGTATA TGTATAGCGA ATTATATAGT TTCTATGTTT GTTATGGAGC GCAATTATGC 22433 .......... .......... .......... .......... .......... .......... 179 AAACTTTGCT ATAGCATACA AATATAAATT TTTTATTTGC TATATGTGAA AGTTGCCCTT 22373 .......... .......... .......... .......... .......... .......... 179 AGTAAAATTT CACTCTTAAT CAGAGGTATT AAGTTGGTGT TCTGAATATA AGGAAAAATT 22313 .......... .......... .......... .......... .......... .......... 179 TAAATAAACA TATCAAAAAC CGCTTCATTA ATGGCCAGAG ATCTTGAATT TGAATCCTAA 22253 .......... .......... .......... .......... .......... .......... 179 ATATAAAATA CACGTATCTT GTAAATTACT ATCAAGATTT TCTAGTACAT ATACAATCTA 22193 .......... .......... .......... .......... .......... .......... 179 CAAAAAATTT TTTTTACTGA ATTCATACAA ACCTATAAAT CACCTAGCTC AGCTTTTGAT 22133 .......... .......... .......... .......... .......... .......... 179 TAAGAGGGTC CTAACATCGA CTCTTTTTCT TTATATATAT AAACAATATA ATTCATTTAT 22073 .......... .......... .......... .......... .......... .......... 179 CAAAAAAATC AAATAAACCC TTCAATCCTA TCAGACTCTA CCCTCCCTCC TTACGTGTAA 22013 .......... .......... .......... .......... .......... .......... 179 GCAAGGAAGA TAAAAACATC ACAACATGCA AAAGAAGACA CCATATTTCC ACCTGCCAAA 21953 .......... .......... .......... .......... .......... .......... 179 ACCTATAAAT TTTCCTCAGC CACGTACTTA ACATGCAACC CCTTTATTCC CCTATAAATT 21893 .......... .......... .......... .......... .......... .......... 179 CAGTTCATTT TCATAGAATA AACATCTCAC ATCTTTTCAT TAATCATCAT CATCATAATA 21833 .......... .......... .......... .......... .......... .......... 179 ACAAAAAAAG AGAAGTATAT AATTAAAAAT CATGGGTAAA ACTATGATAG TTGGAGCCAT 21773 .......... .......... .......... .......... .......... .......... 179 TTCTTTAGCC ATCCTTTTCA TGGCAGCCAC AGTTTGTAGC TCACGTATCA TGACCATCAC 21713 .......... .......... .......... .......... .......... .......... 179 CATTGCTGAA GATGCTCTTA ACCCTCAAAC TCAAAGCTGC CAGCAGCAAT TTCAACAGGT 21653 .......... .......... .......... .......... .......... .......... 179 TTCGCTTTCA TTTTATCTAA TTCCCCCCCC CCCCCCCCCC CTTTTACGCT TTTTGATTTA 21593 .......... .......... .......... .......... .......... .......... 179 TGTGACATTT TTCATTTTTT TCCTTCTTTT TTAATTAATT TTTTTTAGTT ATGAAATTCA 21533 || || | | .......... .......... .......... .......... ........TT ATTTCAGTAC 191 AGTAAATCTT TTAATTCTAA TTTTTTAT 21505 ||| |||| ||||| | | | || || AGTGCATCTA TTAATCATGA TAATTAAT 219 hqPGS_C08HBa0197J17.1-_SGN-E208987- (25911 25783) ******************************************************************************** EST sequence 131 +strand 382 n (File: SGN-E249961+) 1 CCGGGCCTGC AGGGAGAGAT CAAGTTCAAC AAAAAGGTAC TCGATTCACG GGTACCAGTG 61 AGTCAAGAAA CAACTCACAA AAGGGTTCTT TTTATGCCAA CTTCACTGGT AAAGCTTATC 121 CTGGTTCTGG TCGATTGGAC CGGCTTGGAA TGCCTGTTAT CAGGGCAGAT CCATCTGGAT 181 TCAGTGGTGG TCTTCGACAC AGATATTAAG CCAGATATTG TAATTGAAAA CTAACCAGAT 241 GTAACTAATT ATGAATATCT AATGTCTTGT GTCAAGGCCA TGGTGCTAAT GTGATGCATT 301 TTATGTCTAG TTGGTAAACG AATGCAATCT CTTGGTTATG AAAAGTATTT GATTCGAAAA 361 AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 30345 to 28422): Exon 1 29626 29273 ( 354 n); cDNA 4 357 ( 354 n); score: 0.979 PPA cDNA 358 382 MATCH C08HBa0197J17.1- SGN-E249961+ 0.979 354 0.927 C PGS_C08HBa0197J17.1-_SGN-E249961+ (29626 29273) Alignment (genomic DNA sequence = upper lines): GGCCTCACTA TGAGAGATCA AGTTCAACAA AAAGGTACTC GATTCACGGG TA-CAGTGAG 29568 ||||| | ||||||||| |||||||||| |||||||||| |||||||||| || ||||||| GGCCT-GCAG GGAGAGATCA AGTTCAACAA AAAGGTACTC GATTCACGGG TACCAGTGAG 62 TCAAGAAACA ACTCACAAAA GGGTTCTTTT TATGCCAACT TCACTGGTAA AGCTTATCCT 29508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAAACA ACTCACAAAA GGGTTCTTTT TATGCCAACT TCACTGGTAA AGCTTATCCT 122 GGTTCTGGTC GATTGGACCG GCTTGGAATG CCTGTTATCA GGGCAGATCC ATCTGGATTC 29448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCTGGTC GATTGGACCG GCTTGGAATG CCTGTTATCA GGGCAGATCC ATCTGGATTC 182 AGTGGTGGTC TTCGACACAG ATATTAAGCC AGATATTGTA ATTGAAAACT AACCAGATGT 29388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGTGGTC TTCGACACAG ATATTAAGCC AGATATTGTA ATTGAAAACT AACCAGATGT 242 AACTAATTAT GAATATCTAA TGTCTTGTGT CAAGGCCATG GTGCTAATGT GATGCATTTT 29328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAATTAT GAATATCTAA TGTCTTGTGT CAAGGCCATG GTGCTAATGT GATGCATTTT 302 ATGTCTAGTT GGTAAACGAA TGCAATCTCT TGGTTATGAA AAGTATTTGA TTCGA 29273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATGTCTAGTT GGTAAACGAA TGCAATCTCT TGGTTATGAA AAGTATTTGA TTCGA 357 hqPGS_C08HBa0197J17.1-_SGN-E249961+ (29626 29273) ******************************************************************************** EST sequence 75 +strand 460 n (File: SGN-E304620+) 1 TGTTATTCAA NACATTTCCG AGCTTATTTG TCGAGGAGAG CTTTACGCGC GTTAAAGGGA 61 CTGGTGAAGC TTCAAGCACT GGTGAGAGGT CACATTATTA GGCGACAGAC TGCTGATTAT 121 CTACGGCAAA TGCAAGCAAT ATCCAGAGCT CAGTCGAGGG CTCGTGCTGG ACGATCTCAG 181 GTCTCAGGAT CCCCTCATTC AAGCACTAAG TCTGTTCAAT TTGTTCATGA TCCTACAACT 241 CCAGAGAAAT TTGAGCATGT TATCCGCGCA AGGAGCTTGA AGCATGATGA AACATCTGTG 301 CTCAAGAGGA ATACCTCTAA ATCAAATTGG AAGGTCATTG ACTCGGAAAA GGCACGAATT 361 AGACCTCAAG GATCTTCTGC AAGAACTAGT TCTATTGATG ACGAAAAGAG TGACAAGATC 421 CTCGAGATAG ATACCGGGAA ACCATATGTT ACGCCTAAAC Predicted gene structure (within gDNA segment 31817 to 29383): Exon 1 30926 30729 ( 198 n); cDNA 31 228 ( 198 n); score: 1.000 Intron 1 30728 30296 ( 433 n); Pd: 0.983 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 30295 30218 ( 78 n); cDNA 229 306 ( 78 n); score: 1.000 Intron 2 30217 30147 ( 71 n); Pd: 0.999 (s: 1.00), Pa: 0.946 (s: 1.00) Exon 3 30146 29993 ( 154 n); cDNA 307 460 ( 154 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E304620+ 1.000 430 0.935 C PGS_C08HBa0197J17.1-_SGN-E304620+ (30926 30729,30295 30218,30146 29993) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAG CTTTACGCGC GTTAAAGGGA CTGGTGAAGC TTCAAGCACT GGTGAGAGGT 30867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGGAGAG CTTTACGCGC GTTAAAGGGA CTGGTGAAGC TTCAAGCACT GGTGAGAGGT 90 CACATTATTA GGCGACAGAC TGCTGATTAT CTACGGCAAA TGCAAGCAAT ATCCAGAGCT 30807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATTATTA GGCGACAGAC TGCTGATTAT CTACGGCAAA TGCAAGCAAT ATCCAGAGCT 150 CAGTCGAGGG CTCGTGCTGG ACGATCTCAG GTCTCAGGAT CCCCTCATTC AAGCACTAAG 30747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCGAGGG CTCGTGCTGG ACGATCTCAG GTCTCAGGAT CCCCTCATTC AAGCACTAAG 210 TCTGTTCAAT TTGTTCATGT AAGCAATAAC AATCTTCCTT TTCTCCAATT GTACAAATTT 30687 |||||||||| |||||||| TCTGTTCAAT TTGTTCAT.. .......... .......... .......... .......... 228 GAGGCGAACT CTTATTTTCT TAAAGATTGC TGTTCTAAAG TTTTAGTCTT TAATAGAAGT 30627 .......... .......... .......... .......... .......... .......... 228 TCCTACTTTG ATAACGATTA TTCTTCTAGA ATAAAGATCC TTACTTTAAA CATTTCACTT 30567 .......... .......... .......... .......... .......... .......... 228 CAGTTCCCCA CACCTTTTTC CCATCTACTG TAAAGATGCC ACTCTTTTTT TCCTCTTATA 30507 .......... .......... .......... .......... .......... .......... 228 ATAGTAACTA ATCTGAAAGT GATTAAACAT GTCATGTGAC TCTAAAGTCC TTTTACATGT 30447 .......... .......... .......... .......... .......... .......... 228 CACGCAGGGT TCTTTTTTAA TTGAGTTACT TGTGATAATA TATGTGATTA GCGAATGTAA 30387 .......... .......... .......... .......... .......... .......... 228 TTTTTTATTA GCCGAAAATC TTGTCCCCTA TACTGTGTTA GTTAGCTCTA AGTTGCCTAT 30327 .......... .......... .......... .......... .......... .......... 228 GGGTGGTCAA ATGTGTGTTC TTTACGTGTA GGATCCTACA ACTCCAGAGA AATTTGAGCA 30267 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GATCCTACA ACTCCAGAGA AATTTGAGCA 257 TGTTATCCGC GCAAGGAGCT TGAAGCATGA TGAAACATCT GTGCTCAAGG TATTTTATGC 30207 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGTTATCCGC GCAAGGAGCT TGAAGCATGA TGAAACATCT GTGCTCAAG. .......... 306 TTTTTTAATG CAACAACTAT TTTAATTGTT AATGACTAAC TTGGAGTGTC AATAATGCAG 30147 .......... .......... .......... .......... .......... .......... 306 AGGAATACCT CTAAATCAAA TTGGAAGGTC ATTGACTCGG AAAAGGCACG AATTAGACCT 30087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAATACCT CTAAATCAAA TTGGAAGGTC ATTGACTCGG AAAAGGCACG AATTAGACCT 366 CAAGGATCTT CTGCAAGAAC TAGTTCTATT GATGACGAAA AGAGTGACAA GATCCTCGAG 30027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGATCTT CTGCAAGAAC TAGTTCTATT GATGACGAAA AGAGTGACAA GATCCTCGAG 426 ATAGATACCG GGAAACCATA TGTTACGCCT AAAC 29993 |||||||||| |||||||||| |||||||||| |||| ATAGATACCG GGAAACCATA TGTTACGCCT AAAC 460 hqPGS_C08HBa0197J17.1-_SGN-E304620+ (30926 30729,30295 30218,30146 29993) ******************************************************************************** EST sequence 47 -strand 444 n (File: SGN-E207727-) 1 CAAGAAGCTA TATGAGTGGT TACTCTGATC ATCCCAACTA CATGTCCTAC ACAGAGTCCT 61 CGAAGGCCAA GGTACGTTCA ATGAGCGCAC CTAAACAAAG GCCTCACTAT GAGAGATCAA 121 GTTCAACAAA AAGGTACTCG ATTCACGGGT ACAGTGAGTC AAGAAACAAC TCACAAAAGG 181 GTTCTTTTTA TGCCAACTTC ACTGGTAAAG CTTATCCTGG TTCTGGTCGA TTGGACCGGC 241 TTGGAATGCC TGTTATCAGG GCAGATCCAT CTGGATTCAG TGGTGGTCTT CGACACAGAT 301 ATTAAGCCAG ATATTGTAAT TGAAAACTAA CCAGATGTAA CTAATTATGA ATATCTAATG 361 TCTTGTGTCA AGGCCATGGT GCTAATGTGA TGCATTTTAT GTCTAGTTGG TAAACGAATG 421 CAATCTCTTG GTTATGAAAA AAAA Predicted gene structure (within gDNA segment 30335 to 28646): Exon 1 29725 29286 ( 440 n); cDNA 1 440 ( 440 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E207727- 1.000 440 0.991 C PGS_C08HBa0197J17.1-_SGN-E207727- (29725 29286) Alignment (genomic DNA sequence = upper lines): CAAGAAGCTA TATGAGTGGT TACTCTGATC ATCCCAACTA CATGTCCTAC ACAGAGTCCT 29666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAAGCTA TATGAGTGGT TACTCTGATC ATCCCAACTA CATGTCCTAC ACAGAGTCCT 60 CGAAGGCCAA GGTACGTTCA ATGAGCGCAC CTAAACAAAG GCCTCACTAT GAGAGATCAA 29606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGGCCAA GGTACGTTCA ATGAGCGCAC CTAAACAAAG GCCTCACTAT GAGAGATCAA 120 GTTCAACAAA AAGGTACTCG ATTCACGGGT ACAGTGAGTC AAGAAACAAC TCACAAAAGG 29546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAACAAA AAGGTACTCG ATTCACGGGT ACAGTGAGTC AAGAAACAAC TCACAAAAGG 180 GTTCTTTTTA TGCCAACTTC ACTGGTAAAG CTTATCCTGG TTCTGGTCGA TTGGACCGGC 29486 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTTTTA TGCCAACTTC ACTGGTAAAG CTTATCCTGG TTCTGGTCGA TTGGACCGGC 240 TTGGAATGCC TGTTATCAGG GCAGATCCAT CTGGATTCAG TGGTGGTCTT CGACACAGAT 29426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAATGCC TGTTATCAGG GCAGATCCAT CTGGATTCAG TGGTGGTCTT CGACACAGAT 300 ATTAAGCCAG ATATTGTAAT TGAAAACTAA CCAGATGTAA CTAATTATGA ATATCTAATG 29366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAGCCAG ATATTGTAAT TGAAAACTAA CCAGATGTAA CTAATTATGA ATATCTAATG 360 TCTTGTGTCA AGGCCATGGT GCTAATGTGA TGCATTTTAT GTCTAGTTGG TAAACGAATG 29306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTGTCA AGGCCATGGT GCTAATGTGA TGCATTTTAT GTCTAGTTGG TAAACGAATG 420 CAATCTCTTG GTTATGAAAA 29286 |||||||||| |||||||||| CAATCTCTTG GTTATGAAAA 440 hqPGS_C08HBa0197J17.1-_SGN-E207727- (29725 29286) ******************************************************************************** EST sequence 119 +strand 428 n (File: SGN-E308808+) 1 TATGTTACGC CTAAACAAAG GAACCTCTTC CACTCCTCAC ATCTTTGCTT GAACTCTGAC 61 CAATACAGCT ATAGCTTAAC AACGTCGAAG GAATCAACAG CTCATCAAAC GGTTCCCAGT 121 CCATCGTCCT GTGGAAATCA ACCCCTTAGT CCCCTGAAGT TCAATGAAGA TCTTGATGAA 181 GCTTGCTTCT GCACTGCTGA CAATAGCCCT CAGTTTTACT CGGCTTCATC AAAGGGCGGT 241 AGTTCAAAGA GAGGACCTTT TACACCAACT AAGAGCGACG GTTCAAGAAG CTATATGAGT 301 GGTTACTCTG ATCATACCAA CTACATGTCC TACACAGAGT CCTCGAAGGC CAAGGTACGT 361 TCAATGAGCG CACCTAAACA AAGGCCTCAC TATGAGAGAT CAAGTTCAAC AAAAAGGTAC 421 TCGATTCA Predicted gene structure (within gDNA segment 30608 to 28971): Exon 1 30008 29581 ( 428 n); cDNA 1 428 ( 428 n); score: 0.998 MATCH C08HBa0197J17.1- SGN-E308808+ 0.998 428 1.000 C PGS_C08HBa0197J17.1-_SGN-E308808+ (30008 29581) Alignment (genomic DNA sequence = upper lines): TATGTTACGC CTAAACAAAG GAACCTCTTC CACTCCTCAC ATCTTTGCTT GAACTCTGAC 29949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTTACGC CTAAACAAAG GAACCTCTTC CACTCCTCAC ATCTTTGCTT GAACTCTGAC 60 CAATACAGCT ATAGCTTAAC AACGTCGAAG GAATCAACAG CTCATCAAAC GGTTCCCAGT 29889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATACAGCT ATAGCTTAAC AACGTCGAAG GAATCAACAG CTCATCAAAC GGTTCCCAGT 120 CCATCGTCCT GTGGAAATCA ACCCCTTAGT CCCCTGAAGT TCAATGAAGA TCTTGATGAA 29829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCGTCCT GTGGAAATCA ACCCCTTAGT CCCCTGAAGT TCAATGAAGA TCTTGATGAA 180 GCTTGCTTCT GCACTGCTGA CAATAGCCCT CAGTTTTACT CGGCTTCATC AAAGGGCGGT 29769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGCTTCT GCACTGCTGA CAATAGCCCT CAGTTTTACT CGGCTTCATC AAAGGGCGGT 240 AGTTCAAAGA GAGGACCTTT TACACCAACT AAGAGCGACG GTTCAAGAAG CTATATGAGT 29709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCAAAGA GAGGACCTTT TACACCAACT AAGAGCGACG GTTCAAGAAG CTATATGAGT 300 GGTTACTCTG ATCATCCCAA CTACATGTCC TACACAGAGT CCTCGAAGGC CAAGGTACGT 29649 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTACTCTG ATCATACCAA CTACATGTCC TACACAGAGT CCTCGAAGGC CAAGGTACGT 360 TCAATGAGCG CACCTAAACA AAGGCCTCAC TATGAGAGAT CAAGTTCAAC AAAAAGGTAC 29589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATGAGCG CACCTAAACA AAGGCCTCAC TATGAGAGAT CAAGTTCAAC AAAAAGGTAC 420 TCGATTCA 29581 |||||||| TCGATTCA 428 hqPGS_C08HBa0197J17.1-_SGN-E308808+ (30008 29581) ******************************************************************************** EST sequence 130 +strand 547 n (File: SGN-E245710+) 1 CCCATCATCT TCCTCTAACC AAAATCCAAA ACCCACAAAG AAAAAATGGA GCTTTGTTAA 61 ATCTTACAGA GAAAAAGACT CTAACTTTGT AAAGGGAACT GATAAAGAAT CATCAAACTA 121 TGGTCGGGTT GTGTCGAATT CACTTCAAAA CGGCGCTGTT GGGTGTAGTG TTGATTCGTC 181 AAAGCGAGCG ATTGCGGTGG CGGAAGCAAC CGCCGTTGTA GCGGAAGCTG CTATCGCCGC 241 CGCTCAAGCC GCGGCGGCGG TGGTGAAGCT TACTAATAGT GGTAGAGCTA CTACTGCAAC 301 TAATGGCGGT GCCGCTGCTG TTACGACGTG GAACGGCGTT TCTCTTACCT CCTCTGCGGT 361 GGGTTGTAAA AGAAAGGGAG TCGCCGCCGG CAACCGTGAA AATTGGGCCG CCGTTGTTAT 421 TCAATCACAT TTCCGAGCTT ATTTGTCGAG GAGAGCTTTA CGCGCGTTAA AGGGACTGGT 481 GAAGCTTCAA GCACTGGTGA GAGGTCACAT TATTAGGCGA CAGACTGCTG ATTATCTACG 541 GCAAATG Predicted gene structure (within gDNA segment 33530 to 30215): Exon 1 32930 32486 ( 445 n); cDNA 1 445 ( 445 n); score: 1.000 Intron 1 32485 30927 (1559 n); Pd: 0.970 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 30926 30825 ( 102 n); cDNA 446 547 ( 102 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E245710+ 1.000 547 1.000 C PGS_C08HBa0197J17.1-_SGN-E245710+ (32930 32486,30926 30825) Alignment (genomic DNA sequence = upper lines): CCCATCATCT TCCTCTAACC AAAATCCAAA ACCCACAAAG AAAAAATGGA GCTTTGTTAA 32871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATCATCT TCCTCTAACC AAAATCCAAA ACCCACAAAG AAAAAATGGA GCTTTGTTAA 60 ATCTTACAGA GAAAAAGACT CTAACTTTGT AAAGGGAACT GATAAAGAAT CATCAAACTA 32811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTACAGA GAAAAAGACT CTAACTTTGT AAAGGGAACT GATAAAGAAT CATCAAACTA 120 TGGTCGGGTT GTGTCGAATT CACTTCAAAA CGGCGCTGTT GGGTGTAGTG TTGATTCGTC 32751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCGGGTT GTGTCGAATT CACTTCAAAA CGGCGCTGTT GGGTGTAGTG TTGATTCGTC 180 AAAGCGAGCG ATTGCGGTGG CGGAAGCAAC CGCCGTTGTA GCGGAAGCTG CTATCGCCGC 32691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCGAGCG ATTGCGGTGG CGGAAGCAAC CGCCGTTGTA GCGGAAGCTG CTATCGCCGC 240 CGCTCAAGCC GCGGCGGCGG TGGTGAAGCT TACTAATAGT GGTAGAGCTA CTACTGCAAC 32631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCAAGCC GCGGCGGCGG TGGTGAAGCT TACTAATAGT GGTAGAGCTA CTACTGCAAC 300 TAATGGCGGT GCCGCTGCTG TTACGACGTG GAACGGCGTT TCTCTTACCT CCTCTGCGGT 32571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGGCGGT GCCGCTGCTG TTACGACGTG GAACGGCGTT TCTCTTACCT CCTCTGCGGT 360 GGGTTGTAAA AGAAAGGGAG TCGCCGCCGG CAACCGTGAA AATTGGGCCG CCGTTGTTAT 32511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTGTAAA AGAAAGGGAG TCGCCGCCGG CAACCGTGAA AATTGGGCCG CCGTTGTTAT 420 TCAATCACAT TTCCGAGCTT ATTTGGTTAG TTAGTTTAAA TAATTTGCTG ATTTTAACTT 32451 |||||||||| |||||||||| ||||| TCAATCACAT TTCCGAGCTT ATTTG..... .......... .......... .......... 445 ATTTATAGTA ATTATATGGT AAAAGTTTAA TCTTTATTAT GTAGTTACAG CTAATCTGCA 32391 .......... .......... .......... .......... .......... .......... 445 TTATTTTGAT TGACAAACAG TTAGTTTTTA TGTGAATTAC AACAACAAAA GGTGGAGAGA 32331 .......... .......... .......... .......... .......... .......... 445 CTGTTTTTGA TTATATTTAT GTGAATAGAT AGGGAAATAA TTCTTCTTTA TTCACATTGA 32271 .......... .......... .......... .......... .......... .......... 445 TTGAAAGTTG TTTTTTCCAA TGTCCTTTAT TGCTATGTTT TTTTTTCATA TGAAACAAAC 32211 .......... .......... .......... .......... .......... .......... 445 TAACGTAGCT TATTGTGTAT CTATTATGTT ATCCTTTTTT CAAGAAAAAA ATGATCTTTT 32151 .......... .......... .......... .......... .......... .......... 445 TTTGTTATGT GGGGTATGGG GTGGTTAAGA GTTGGAACAT TGGTGAAGGG AAATGTAAAA 32091 .......... .......... .......... .......... .......... .......... 445 GAGGAAGAGA TATGGGGGCA ATGTAAGGAA CCGTGTGGAC CTAAAAATCT AAAAATAGAA 32031 .......... .......... .......... .......... .......... .......... 445 AATATAATGG GTTAGGCTGA AGTTTTCAAG ATTCATTAAA AAAATTATAG AAATGGGCTA 31971 .......... .......... .......... .......... .......... .......... 445 AAGTGTACTT TTTTATATAA AAAATTAAGA ACTGTGCTAA AGTAAATTCC AAGATGGGTA 31911 .......... .......... .......... .......... .......... .......... 445 GTTTCCTATT ATGTGTTTCT ATTGTTTTAT ATGTTTTACT TTGATTAGGA CTTAGTAGTA 31851 .......... .......... .......... .......... .......... .......... 445 TGTTTTTTGT ACATTGCTGC AACTGTAGTG TTACTGTATC AGCCAGCAAG CAAGGTCACT 31791 .......... .......... .......... .......... .......... .......... 445 AGCACTGTTT GATGATGTTA AAGTTGCATG TATTTTGTTT TGTGGTACTC TTTTGTTTTT 31731 .......... .......... .......... .......... .......... .......... 445 CATATGATGT AAAACTTGAC CAAAACTAAG GTAAAAAATT TTTGTTTCTA TTTTTCGGGT 31671 .......... .......... .......... .......... .......... .......... 445 ATTTTCAGCA TCATAGATAA TGACTGGAAC CTGATAAGCA CTTTAATTTG GTTAGGCATT 31611 .......... .......... .......... .......... .......... .......... 445 GAGGAATTTC ATATTAATGT CTCTTAGTTA ATATGGCTAA TTGTTAGGTA ACTTAGTTCA 31551 .......... .......... .......... .......... .......... .......... 445 GTATGTGCAA ACATCATAAA TTCTTTGCCC TGAGGGTCAA AAGGTTTATA TGTTTAGCTG 31491 .......... .......... .......... .......... .......... .......... 445 TTCTTTTGGA CCACTTGGTG TATTAGTTGA TTATCGACAT GTATTGAGTT TTTTTTACTA 31431 .......... .......... .......... .......... .......... .......... 445 TCGGTAAATT TTAGTCTTTG TATTTGAGTT CTTGATAGTA TTGTGGCTCG ATCTGTGTTG 31371 .......... .......... .......... .......... .......... .......... 445 TTTGGACTCT AAAAATGTCG CGGCACTACT TTTGGATGAT TGGACACGCA CATGTTCGAC 31311 .......... .......... .......... .......... .......... .......... 445 GTTTTCGAAA TGTCCGAGCA ACATAGTGCC AATTTTGTTC TCTTCATTTC CATGAAGATT 31251 .......... .......... .......... .......... .......... .......... 445 ATTGAGGAAA AGGAGATGAG AACTTTTTTG TGTAGTACAA TTGCTTTGTC TTAAGAGAGT 31191 .......... .......... .......... .......... .......... .......... 445 TGGCAGTCAG AAGCTTTTAT GGTACTACTT TTCATTTCTT CATTAGAAGG TTGGTTGAAT 31131 .......... .......... .......... .......... .......... .......... 445 TGTCATATGT CATAATCTTC TGAAAATGTC AGACTTCACT TTAGAAGAAG ACTTCAGAGG 31071 .......... .......... .......... .......... .......... .......... 445 TGTGAAAATG AAGTTTTAAG GCGCCAACAC CCTTTGAAAA TTTTCATGCT TTTCTGTGCT 31011 .......... .......... .......... .......... .......... .......... 445 ATGGCATCAT CACAAACTAA TTACTGTTAC ACTATTTGTT TTGCCAATTA ATTACATTTT 30951 .......... .......... .......... .......... .......... .......... 445 ATGGTCTTAA TATGTAATCT GAAGTCGAGG AGAGCTTTAC GCGCGTTAAA GGGACTGGTG 30891 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....TCGAGG AGAGCTTTAC GCGCGTTAAA GGGACTGGTG 481 AAGCTTCAAG CACTGGTGAG AGGTCACATT ATTAGGCGAC AGACTGCTGA TTATCTACGG 30831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTCAAG CACTGGTGAG AGGTCACATT ATTAGGCGAC AGACTGCTGA TTATCTACGG 541 CAAATG 30825 |||||| CAAATG 547 hqPGS_C08HBa0197J17.1-_SGN-E245710+ (32930 32486,30926 30825) ******************************************************************************** EST sequence 135 +strand 317 n (File: SGN-E280764+) 1 GCACGAGCTT CTTCTTCTTC TCACTCGTTC ACTTCCATTT CTCTGCAAAC AGAACAGAGG 61 AAAAATGTTT TTTTTCAATC CACCCTCTAT ATTTTAAATA AATGGGCAAA GCATCCAAAT 121 GGTTTAGAGG TCTTCTTGGC CTAAAAAAAC AGGACCCATC ATCTTCCTCT AACCAAAATC 181 CAAAACCCAC AAAGAAAAAA TGGAGCTTTG TTAAATCTTA CAGAGAAAAA GACTCTAACT 241 TTGTAAAGGG AACTGATAAA GAATCATCAA ACTATGGTCG GGTTGTGTCG AATTCACTTC 301 AAAACGGCGC TGTTGGG Predicted gene structure (within gDNA segment 33746 to 32158): Exon 1 33076 32768 ( 309 n); cDNA 8 317 ( 310 n); score: 0.976 MATCH C08HBa0197J17.1- SGN-E280764+ 0.976 309 0.975 C PGS_C08HBa0197J17.1-_SGN-E280764+ (33076 32768) Alignment (genomic DNA sequence = upper lines): CTTCTTCTTC TTCTCACTCG TTCACTTCCA TTTCTCTGCA AACAGAACA- AAAAAAAATG 33018 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | ||||||| CTTCTTCTTC TTCTCACTCG TTCACTTCCA TTTCTCTGCA AACAGAACAG AGGAAAAATG 67 TTTTTTTTCA ATCCAATTTC TATATTTTAA ATAAATGGGC AAAGCATCCA AATGGTTTAG 32958 |||||||||| ||||| || |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTCA ATCCACCCTC TATATTTTAA ATAAATGGGC AAAGCATCCA AATGGTTTAG 127 AGGTCTTCTT GGCCTAAAAA AACAGGACCC ATCATCTTCC TCTAACCAAA ATCCAAAACC 32898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCTTCTT GGCCTAAAAA AACAGGACCC ATCATCTTCC TCTAACCAAA ATCCAAAACC 187 CACAAAGAAA AAATGGAGCT TTGTTAAATC TTACAGAGAA AAAGACTCTA ACTTTGTAAA 32838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAAGAAA AAATGGAGCT TTGTTAAATC TTACAGAGAA AAAGACTCTA ACTTTGTAAA 247 GGGAACTGAT AAAGAATCAT CAAACTATGG TCGGGTTGTG TCGAATTCAC TTCAAAACGG 32778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACTGAT AAAGAATCAT CAAACTATGG TCGGGTTGTG TCGAATTCAC TTCAAAACGG 307 CGCTGTTGGG 32768 |||||||||| CGCTGTTGGG 317 hqPGS_C08HBa0197J17.1-_SGN-E280764+ (33076 32768) ******************************************************************************** EST sequence 138 +strand 313 n (File: SGN-E313456+) 1 AAGAAGCACA TTATTTTTGA CTTCTCTTCC ATTTCACACA AATCTCTCTT CTTCTTCTTC 61 TCACTCGTTC ACTTCCATTT CTCTGCAAAC AGAACAAAAA AAAATGTTTT TTTTCAATCC 121 AATTTCTATA TTTTAAATAA ATGGGCAAAG CATCCAAATG GTTTAAAGGT CTTCTTGGCC 181 TAAAAAAACA GGACCCATCA TCTTCCTCTA ACCAAAATCC AAAACCCACA AAGAAAAAAT 241 GGAGCTTTGT TAAATCTTAC AGAGAAAAAG ACTCTAACTT TGTAAAGGGA ACTGATAAAG 301 AATCATCAAA CTA Predicted gene structure (within gDNA segment 33723 to 32201): Exon 1 33123 32811 ( 313 n); cDNA 1 313 ( 313 n); score: 0.997 MATCH C08HBa0197J17.1- SGN-E313456+ 0.997 313 1.000 C PGS_C08HBa0197J17.1-_SGN-E313456+ (33123 32811) Alignment (genomic DNA sequence = upper lines): AAGAAGCACA TTATTTTTGA CTTCTCTTCC ATTTCACACA AATCTCTCTT CTTCTTCTTC 33064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGCACA TTATTTTTGA CTTCTCTTCC ATTTCACACA AATCTCTCTT CTTCTTCTTC 60 TCACTCGTTC ACTTCCATTT CTCTGCAAAC AGAACAAAAA AAAATGTTTT TTTTCAATCC 33004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTCGTTC ACTTCCATTT CTCTGCAAAC AGAACAAAAA AAAATGTTTT TTTTCAATCC 120 AATTTCTATA TTTTAAATAA ATGGGCAAAG CATCCAAATG GTTTAGAGGT CTTCTTGGCC 32944 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AATTTCTATA TTTTAAATAA ATGGGCAAAG CATCCAAATG GTTTAAAGGT CTTCTTGGCC 180 TAAAAAAACA GGACCCATCA TCTTCCTCTA ACCAAAATCC AAAACCCACA AAGAAAAAAT 32884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAAAACA GGACCCATCA TCTTCCTCTA ACCAAAATCC AAAACCCACA AAGAAAAAAT 240 GGAGCTTTGT TAAATCTTAC AGAGAAAAAG ACTCTAACTT TGTAAAGGGA ACTGATAAAG 32824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCTTTGT TAAATCTTAC AGAGAAAAAG ACTCTAACTT TGTAAAGGGA ACTGATAAAG 300 AATCATCAAA CTA 32811 |||||||||| ||| AATCATCAAA CTA 313 hqPGS_C08HBa0197J17.1-_SGN-E313456+ (33123 32811) ******************************************************************************** EST sequence 3 +strand 701 n (File: SGN-E578389+) 1 GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 61 CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 121 TATACAATTG TAGTTAAATA GGATAGCGAA TTATACAATT GCAGCGAAAT AGGCCAGCGA 181 ATTATACAAT TTAGGTCAGC GAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 241 CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 301 TTAATTAAAG AGTCAATAAA ATAGCGGTCT AATCAAGTCC TAAGCAGCCC AAGGTTTGAC 361 CCGTCAACCC AAAAATGAAT AATATTATGG GAAAAGGGTA TGATATACCC CTCAACTTTG 421 TCATTTGAAA CTGATATACC CCTCGTTATG AAAGTGGCTC ATATATACCC TTACCGTTAT 481 ACAAATGGTT CACATATACC TCTGCCGTTA CAAAATGAGC TCATATATAC CCTTCATTTA 541 ACGAAAGTGA AAAAATTACT TTTAAATTTA TAATTTTACT TTAATTTTAA AAAAAAATAT 601 ATTTAGGGGC ATATATGATT CTTTTTTCAA AGTTCAAGGT ATATTTCAAA TTTTTTTAAT 661 ACATAAATTA TTTTTTTGAC TTATTTATTA TAATTATTTG A Predicted gene structure (within gDNA segment 36200 to 42784): Exon 1 37248 37329 ( 82 n); cDNA 84 164 ( 81 n); score: 0.774 Intron 1 37330 37497 ( 168 n); Pd: 0.000 (s: 0.77), Pa: 0.942 (s: 0) Exon 2 37498 37536 ( 39 n); cDNA 165 203 ( 39 n); score: 0.974 Intron 2 37537 37566 ( 30 n); Pd: 0.681 (s: 0), Pa: 0.000 (s: 0.76) ?? Exon 3 37567 37659 ( 93 n); cDNA 204 299 ( 96 n); score: 0.833 Intron 3 37660 41825 (4166 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 4 41826 41850 ( 25 n); cDNA 300 322 ( 23 n); score: 0.720 MATCH C08HBa0197J17.1+ SGN-E578389+ 0.806 239 0.341 C PGS_C08HBa0197J17.1+_SGN-E578389+ (37248 37329,37498 37536,37567 37659,41826 41850) Alignment (genomic DNA sequence = upper lines): ATTTTACTTC AAATATTGCA GAGAAAAAGG CCAAAGAATT ATACAATTGT -GAATTATAC 37306 |||||| | ||||||||| | |||| ||| || ||||| |||||||||| | ||| ATTTTA-TAA TAATATTGCA GCGAAATAGG -CAGCGAATT ATACAATTGT AGTTAAATAG 141 AATTGCGAAT TATACAATTG CAGTGAAATA CAATTTGTCT AGCTTTATAC AACAGAAGTA 37366 || |||||| |||||||||| ||| GATAGCGAAT TATACAATTG CAG....... .......... .......... .......... 164 TATATATTGT GTTTGTGTTT TTGTATAAAG CGAGAAAAAC ATATATCTTC TTGCTATACA 37426 .......... .......... .......... .......... .......... .......... 164 CTCATAATTA TGCAATATAC ATACATTTTA ATTCGATTCA ACTGTATGCA AAGCTAATTA 37486 .......... .......... .......... .......... .......... .......... 164 TACAATTGCA GCGAAATAGG CCAGCGAATT ATACAATTTA GGCCAGCGAA GTATACACTT 37546 ||||||||| |||||||||| |||||||||| || ||||||| .......... .CGAAATAGG CCAGCGAATT ATACAATTTA GGTCAGCGAA .......... 203 TTATATGTAT AGCGAATTAT --ACA-ATTT TTATGTTTGC TATGGAGCGC AATTATGCAA 37603 | | | || |||||||||| |||||||||| |||||||||| .......... .......... TTATACAATT TTATGTTTGC TATGGAGCGC AATTATGCAA 243 AGTTTGCTAT ATTATACAAA TATGATTTTT TTGTTTGCTA TATGTGAAAG TTGCCCTATT 37663 | |||| ||| | ||||||| ||||| |||| ||||||| || |||||||||| |||||| ACTTTGTTAT AGCATACAAA TATGAATTTT TTGTTTGTTA TATGTGAAAG TTGCCC.... 299 GAAAATTCGA TTTAAACTTT AATTTTGATA TTTTACGATA TGATAAATCA GTTATCATAA 37723 .......... .......... .......... .......... .......... .......... 299 TTTGTCAATT TCAATCTACG TATTTGTTAA TAAAAATTAT TATAGCAAAT TTTTAAGAAA 37783 .......... .......... .......... .......... .......... .......... 299 CGTCTCAATT ATGTCACATG AATATTTTAT ATATATAAAA ATATTTAATA TGAAGTATAA 37843 .......... .......... .......... .......... .......... .......... 299 ATAATTCTCT TTGTTAGTCA ATCAACAAAA AAAATATTTA AAATTTTAAT ATCTAAATAA 37903 .......... .......... .......... .......... .......... .......... 299 TTAGATACTA TATTATATTT TACTATATAT ATATATATGT ATGTGCACGC GTGAGAATTT 37963 .......... .......... .......... .......... .......... .......... 299 CATTTATAAT TTTATGTCTT GATAATATTT TCCATATATT TTCTATTTTA TAAATTTCAA 38023 .......... .......... .......... .......... .......... .......... 299 ATATCATATC GAAACTTTTT AAAAATGTAT ATCAGAATCA TAATTCAGCG TTTAAAATTT 38083 .......... .......... .......... .......... .......... .......... 299 CAATTTTAAC ATGATATTTG GTATCATCCA CCATTATAGA TGCATTCACC ATGAATTGAC 38143 .......... .......... .......... .......... .......... .......... 299 TCTAGTCAAC TATAGCAATA TATCTTTGAA AAATTGAGGT GATTATTATA ATATGAATAT 38203 .......... .......... .......... .......... .......... .......... 299 CAAATTGCAA TTAATTTGAT TTGATCATTT TTTTTATATT TAATATAAAC GTCATATACT 38263 .......... .......... .......... .......... .......... .......... 299 GATGCCGTCA TATACTGATG AGCTGTTTTG CTGCTATGAG AAAGGTGTTG GACTCTCTAT 38323 .......... .......... .......... .......... .......... .......... 299 TTGACCATGA AATTTGTAAA TGTACTCTAT AAAATTATTA TTATTGGGTT AATAATAGAG 38383 .......... .......... .......... .......... .......... .......... 299 TATATAAAAT CTGAAAAGTA CAACTTCCTC GTGTTTAATT AAAGAAAACA TTCATTTTTC 38443 .......... .......... .......... .......... .......... .......... 299 TTCTTTTTGC CTTTTGCAAT TAATTAATTA ATTAATCCTG AGCAGTATTA TTGCTCTCTC 38503 .......... .......... .......... .......... .......... .......... 299 CGTTTTGATT TTGTGTATAT TAAGACAAGA AAATTGAAAT AATTTTATTT AAATTTTAAT 38563 .......... .......... .......... .......... .......... .......... 299 ATGAAACGAG AAAAAAAGAA TATTAATATA TATCTATTAC ATTTACATGC TGTCAGTACT 38623 .......... .......... .......... .......... .......... .......... 299 GATGAAATGA GTTGTTAATA ACTTGTCTTA GACGGCAAAT TAGGCAGTGT CTCAATATAT 38683 .......... .......... .......... .......... .......... .......... 299 ATATATATAT GAGATTCTGA TGAAATGACT AAACATAATA AATCTGTCTC TATATTTTTA 38743 .......... .......... .......... .......... .......... .......... 299 TTTGACAAAA CGACTGATTC AGTATTCACG TGCTACCTAG CTACCTCTTG CTCTTTTCTA 38803 .......... .......... .......... .......... .......... .......... 299 CCTACACCGT TTCAATTTAC GTGACATACA AAAATATTCA TATTTATCTC TGTACTTTAA 38863 .......... .......... .......... .......... .......... .......... 299 ATTAGACATA ATACATAAAC ATTACCTTTA ATATAACATT GATCTTTAAC ATTAGATGTG 38923 .......... .......... .......... .......... .......... .......... 299 CATAAATAAA CACTTAAATT TATATAAAAT TGAGCAAATG AACATATTCA TCCTACGTGA 38983 .......... .......... .......... .......... .......... .......... 299 TACCCTACAT GACAATTTTG GGTGCTACAT GATGTTGTAC GTGTATTGTG TCATATAGGA 39043 .......... .......... .......... .......... .......... .......... 299 CAATTGTGTC TTCTTGTTTA ATTTCATACG AGTTTAAATG TCTATTTATT CATATTCAAA 39103 .......... .......... .......... .......... .......... .......... 299 GTTGGAGCAC ATAGTTATCC GTTGAAGTCA AGTTAAAGGT CATGTTTATA TACTATGCAT 39163 .......... .......... .......... .......... .......... .......... 299 TTAGATTATG TTGCTCGGAC TCATCAAATC AAATTTATTT TGGATCCTTC AAAAGTCATG 39223 .......... .......... .......... .......... .......... .......... 299 TAGACCAATA CAAATTCGAC AACATTTCTA AAAAGTCCGA ACAATTTGGT TTTAAATGTT 39283 .......... .......... .......... .......... .......... .......... 299 CAAACACATA TGTAAGACAT CAAAGTTACC ACCATGTATT TTGGGAATAC TAAAATCCAC 39343 .......... .......... .......... .......... .......... .......... 299 AGCTCATACT TTATTATTTG AGTTATTACA ATCTTTTTGG ATCGTTTATA CAAGTCACTG 39403 .......... .......... .......... .......... .......... .......... 299 AAACTATTTT ATAAGAAAAA GAAATTCTAA GCAGAGAAGC AAAATAATTT TATACATTCC 39463 .......... .......... .......... .......... .......... .......... 299 TACAATAGAT GCTCTTAATA ATACACTCCT ATTTTATGCA GAACAGAAAA TTTTACATTA 39523 .......... .......... .......... .......... .......... .......... 299 CATCGAGAAA GAACATTGTT GTCCATCGTC GATTCGATCG CTTTATTGAC TTTATCGGTT 39583 .......... .......... .......... .......... .......... .......... 299 GTTTCATCTT TGAGTAGCTT TTCAATCTGT GTTTGATACC ATTCCTCCTG AGTTCTTCCT 39643 .......... .......... .......... .......... .......... .......... 299 AGATGTCAAT CCACCAAATG AGAGAATTAT ATCTGTCATT CTTCGGCTAA TGTCTTCGAA 39703 .......... .......... .......... .......... .......... .......... 299 TGATGGACGA AGTTCTGGTT TGCTGTTTCA TAACAAACGC TTAAGTCTAG TTCATTCACA 39763 .......... .......... .......... .......... .......... .......... 299 ATCGATCTAT GTTGCTTGGA CTTTTCAAAA ACGTCTATTA CACGTGAAAT CCTCCAAAAA 39823 .......... .......... .......... .......... .......... .......... 299 GTAGTGCTTT ATGCCTTATT GGATGACTTT GATATGAATG CAACTAACAT TTTTGGAAAG 39883 .......... .......... .......... .......... .......... .......... 299 TCCGAGCAAC ATAGTTTACA ATATCAATAG AAAGCAGAGG AAAGCACCTT TGCCAACAAT 39943 .......... .......... .......... .......... .......... .......... 299 CAAGGATAAT AGCTGAAACG CGAGGATCAA GTTTTTGCGG AATATCCAGC CTACCATCCA 40003 .......... .......... .......... .......... .......... .......... 299 TGAATCCAAC AACTCCGACA ACCTTCAAAT AAATAAACTA CTTCGATACC AGTACAAACC 40063 .......... .......... .......... .......... .......... .......... 299 AGCTCGCTAT GAATAGAAAA TGAACGTTGA AGTTAATTCA ATCTCAAAAA CTAGCACATG 40123 .......... .......... .......... .......... .......... .......... 299 AGGTGACGAT TGTCCACAGA CCATTTAAGA AGATAAATTG TCACATTCAC CACCAATGTG 40183 .......... .......... .......... .......... .......... .......... 299 GGATATACTA ACATACTATC ATCATTTGCA GGCATATTAA CACCGAACAT AGTGAAAGAA 40243 .......... .......... .......... .......... .......... .......... 299 ATATCGAGGT ACCTGTAAAG GATTAAGGTC CTTCCAAGGA ACAGATTCAG TCATTAGTTC 40303 .......... .......... .......... .......... .......... .......... 299 CCACAAGATC ACACCGAAAC TGAAGACATC AGATCTGCAC AACAGCGGAA GGACTACATC 40363 .......... .......... .......... .......... .......... .......... 299 AAAATAGCGC CATCGCAAGT CATGTTAATT ATGTAGAATG TGAAGCAGCA TGCAACAACA 40423 .......... .......... .......... .......... .......... .......... 299 TGCCTAAAAA CCTTTCTCAA AACCAATAAA TAGGATAAAC TATTCAAAAT CGACCAAAAA 40483 .......... .......... .......... .......... .......... .......... 299 ACAAAATAAT CCAGTGATTA TGGTCACTGA TTATAATCCA ACACAATTTG TCCCGAAAAA 40543 .......... .......... .......... .......... .......... .......... 299 AAGAGCCCCA CCAATGGCTC AAGTTTAAAA ATTGGTTTTG CATAACATCA TCAAAGTTAA 40603 .......... .......... .......... .......... .......... .......... 299 CTAACAAATA AGCAAAATAA AACAGAAAGT AAAGCTTGTA AAACTTACTT CTCTGTTGAA 40663 .......... .......... .......... .......... .......... .......... 299 GGTTCATTTC TAAGTACTTC AGGAGCCATC CACTGCGGCT GCAACGATAA CAGCAAAGTA 40723 .......... .......... .......... .......... .......... .......... 299 AAATTTTGTG AGGGACAGGT AACAGCATTA TCCAATTCAA TGTCACCACA ATAAAGCGTA 40783 .......... .......... .......... .......... .......... .......... 299 AAGTAAAAAG CTGAGATGCG TACCGTCCCT CGTCCAGAAT TTGCTGTTAA GAAGGTAGCA 40843 .......... .......... .......... .......... .......... .......... 299 TGTTTCAATT TTGACAGGCC AAAATCTCCA ACCTAAGAAA GAGACGCCAA TAATCTTATA 40903 .......... .......... .......... .......... .......... .......... 299 TAGTATTCAG TAATTCGTAA AAATGGCTTC ACTACGAATA AATTTAGAAG TTCAACAGAG 40963 .......... .......... .......... .......... .......... .......... 299 AAATAAAGAC CTTGACAGTC CAGCTTTTAT CCACAAGCAG GTTTGAAGAT TTAAGGTCTC 41023 .......... .......... .......... .......... .......... .......... 299 TATGTACTAT AGGAGGATTC CGTCGATGCA AGTAACACAT ACCCCTAGCC TAAATCAAAC 41083 .......... .......... .......... .......... .......... .......... 299 AAAAGAAAGA GTGAAAAAAC CCATGAATTC TTAGTTACAC AAATTTGTGA GTCCAAGCAG 41143 .......... .......... .......... .......... .......... .......... 299 AAAACAAACC ACATCAAGGG CCATCCTAAG ACGCCTTTTG AGGTCTAGTG GCGGATTATT 41203 .......... .......... .......... .......... .......... .......... 299 CCTGTGAAGT GCTTTAAAAA GACTTCCCCT GAAACACATG ATGAACGTAC GAGCTGTTAT 41263 .......... .......... .......... .......... .......... .......... 299 GGTCTGCCTA GTTTTATGTC ATAACCAAGA CCACGCTAAG ATAACATTGA TGTGCTTTAT 41323 .......... .......... .......... .......... .......... .......... 299 TACCTGGGCA TATACTCGGT GATAATGGCA AGTTTTTCCT GTGAACTTAC TGCTCCCATA 41383 .......... .......... .......... .......... .......... .......... 299 AATAATAGCA CGTTCGGATG TCTAAGTCTT TTCATTATGT CAATCTGCAG ACATATTGAA 41443 .......... .......... .......... .......... .......... .......... 299 TCTCAATTAA AAATCTGTTA ATATGGTTAA TTCAATGACC ATCTGATGGC ATAATATACC 41503 .......... .......... .......... .......... .......... .......... 299 TCCTTTTTGT AGTCAAGCAA AGTTGTATCG CCGCATTGGT TCCCAAAGAA AACCTTAACA 41563 .......... .......... .......... .......... .......... .......... 299 GCAACATCCT GAAGGATCAA AAAGGAGAAA AGACACAAAT ACCATAACAA ATGAGATATT 41623 .......... .......... .......... .......... .......... .......... 299 TTTTCACTGT CCTCATAATG TGAAAAGAAT ATTGTGAACT AGGAAAGTAC CGATCCTTTC 41683 .......... .......... .......... .......... .......... .......... 299 CAAATTCCGT GATACACAAC GCCGAATGCA CCTGAAAAAT GAAATATTAT AGCGATTGAG 41743 .......... .......... .......... .......... .......... .......... 299 GCAATGTGCG TACAAGTATA TCTCTAACAA CTTGGTTATT TCTTCTCTAA CTAACTTTGG 41803 .......... .......... .......... .......... .......... .......... 299 CCAACATCAC TATGTGCAAT AGACAAATTG GACTATGTCA ATAAAAT 41850 | |||| | | |||| ||||||| .......... .......... ..ATTAATT- AAAGA-GTCA ATAAAAT 322 hqPGS_C08HBa0197J17.1+_SGN-E578389+ (37248 37329,37498 37536,37567 37659,41826 41850) ******************************************************************************** EST sequence 123 -strand 612 n (File: SGN-E394609-) 1 ATTATTACAC CCCTAATGAA ATGATTAAGG AACTTATTAA AGCAAAACAA CTAAATTCTT 61 ATTTTGCAAT CTTTTCTTGT CATTCACAAG CGATAATTCT AAATCTTTTT CCTTCTCTCC 121 ATTTTATACA AGCTCTTGGG AAAATTGTAT ATAATAGCAA ACTAGTAATC TAACTAAATG 181 GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA GTTTGTCAGG 241 CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT CGCTCGCCTA TCTCGCTATA 301 TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA GCGAGAGAAA ATTGTATATA 361 CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT 421 ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA ATTGTGAATT ATATAATTGC 481 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 541 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 601 ACATACATTT TA Predicted gene structure (within gDNA segment 33541 to 38589): Exon 1 36973 37456 ( 484 n); cDNA 139 612 ( 474 n); score: 0.860 MATCH C08HBa0197J17.1+ SGN-E394609- 0.860 484 0.791 C PGS_C08HBa0197J17.1+_SGN-E394609- (36973 37456) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATAAAATAGC AAATTAATAA TCTAAATTAA ATTAAATAGC TAGGGTTTGA 37032 |||||||||| ||| |||||| ||| || ||| ||| || ||| || | |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 197 TTTAATTGTG CTCTATAGCA AACATTGACA AAAATTTGCC AGGCGTCTCT CTCCCAGAAG 37092 |||||||||| ||| |||||| ||| || | ||| |||| | ||||||||| |||||| || TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 257 TCTCGCTCGT CACTCTCCCA T-T--CTCGC CTCTCTCGCT TTATACACAG AAGTGTATAA 37149 ||||||||| |||||||| | | ||||| || ||||||| ||||||||| |||||||||| TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 317 TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATGTAT 37209 ||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||| ||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 377 ATCTTCGTGT TATACACTTA ATTATATAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 37269 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA 437 GAAAAAGGCC AAAGAATTAT ACAATTGTGA ATTATACAAT TGCGAATTAT ACAATTGCAG 37329 |||||||||| || ||||||| ||||||||| ||| | | ||| |||||||| GAAAAAGGCC AACGAATTAT ACAATTGTG- -------AAT T----A-TAT --AATTGCAG 482 TGAAATACAA -TTTGTCTAG CTTTATACAA CAGAAGTATA TATATTGTGT TTGTGTTTTT 37388 |||||||||| ||| |||| |||||||||| ||||||| || |||||||||| || ||||||| TGAAATACAA TTTTCTCTAA CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTT 542 GTATAAAGCG AG--AAAAAC ATATATCTTC TTGCTATACA CTCATAATTA TGCAATATAC 37446 |||||||||| || |||||| |||||| ||| |||| ||||| || ||||||| |||||||||| GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA CTTATAATTA TGCAATATAC 602 ATACATTTTA 37456 |||||||||| ATACATTTTA 612 hqPGS_C08HBa0197J17.1+_SGN-E394609- (36973 37456) ******************************************************************************** EST sequence 6 +strand 750 n (File: SGN-E379112+) 1 TGTGGGAATA TATATATATA TATATTCCGT TAATTAGACG AAATTGAGAA GCTGAAATCT 61 CACCTATAAC ATCAAGTATA CACGTTACCT ATGCCCTGGT TGTTTATAGC TGAATTTCAA 121 GCCCCTTTTC TTATTCTATT ATTACACCCC TAATGAAATG ATTAAGGAAC TTATTAAAGC 181 AAAACAACTA AATTCTTATT TTGCAATCTT TTCTTGTCAT TCACAAGCGA TAATTCTAAA 241 TCTTTTTCCT TCTCTCCATT TTATACAAGC TCTTGGGAAA ATTGTATATA ATAGCAAACT 301 AGTAATCTAA CTAAATGGAG TAGCTAGAGT TTGATTTAAT TGTGCTCCAT AGCAAACGTT 361 AGCTAAAGTT TGTCAGGCGT CTCCCTCCCA AAAATCTCGC TCGCCACTCT CCATTCTCGC 421 TCGCCTATCT CGCTATATAC ACAGAAGTGT ATAAATTCTG TTTCTATTTT GTATAAAGCG 481 AGAGAAAATT GTATATACAC ATGTAAAAAT ATATATCTTC GTGTTATACA CTTAATTATA 541 CAAATTACAA ACATTTTACT TCAAATATTG CAGAGAAAAA GGCCAACGAA TTATACAATT 601 GTGAATTATA TAATTGCAGT GAAATACAAT TTTCTCTAAC TTTATACAAC AGAAGTGTAT 661 ATATTGTGNT TTTTGTTTTT GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA 721 CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 32181 to 38581): Exon 1 36973 37456 ( 484 n); cDNA 276 750 ( 475 n); score: 0.854 MATCH C08HBa0197J17.1+ SGN-E379112+ 0.854 484 0.645 C PGS_C08HBa0197J17.1+_SGN-E379112+ (36973 37456) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATAAAATAGC AAATTAATAA TCTAAATTAA ATTAAATAGC TAGGGTTTGA 37032 |||||||||| ||| |||||| ||| || ||| ||| || ||| || | |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 334 TTTAATTGTG CTCTATAGCA AACATTGACA AAAATTTGCC AGGCGTCTCT CTCCCAGAAG 37092 |||||||||| ||| |||||| ||| || | ||| |||| | ||||||||| |||||| || TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 394 TCTCGCTCGT CACTCTCCCA T-T--CTCGC CTCTCTCGCT TTATACACAG AAGTGTATAA 37149 ||||||||| |||||||| | | ||||| || ||||||| ||||||||| |||||||||| TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 454 TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATGTAT 37209 ||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||| ||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 514 ATCTTCGTGT TATACACTTA ATTATATAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 37269 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA 574 GAAAAAGGCC AAAGAATTAT ACAATTGTGA ATTATACAAT TGCGAATTAT ACAATTGCAG 37329 |||||||||| || ||||||| ||||||||| ||| | | ||| |||||||| GAAAAAGGCC AACGAATTAT ACAATTGTG- -------AAT T----A-TAT --AATTGCAG 619 TGAAATACAA -TTTGTCTAG CTTTATACAA CAGAAGTATA TATATTGTG- TTTGTGTTTT 37387 |||||||||| ||| |||| |||||||||| ||||||| || ||||||||| ||| |||||| TGAAATACAA TTTTCTCTAA CTTTATACAA CAGAAGTGTA TATATTGTGN TTTTTGTTTT 679 TGTATAAAGC GAG--AAAAA CATATATCTT CTTGCTATAC ACTCATAATT ATGCAATATA 37445 |||||||||| ||| ||||| ||||||| || ||||| |||| ||| |||||| |||||||||| TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC ACTTATAATT ATGCAATATA 739 CATACATTTT A 37456 |||||||||| | CATACATTTT A 750 hqPGS_C08HBa0197J17.1+_SGN-E379112+ (36973 37456) ******************************************************************************** EST sequence 77 -strand 570 n (File: SGN-E379618-) 1 GCAAAACAAC TAAATTCTTA TTTTGCAATC TTTTCTTGTC ATTCACAAGC GATAATTCTA 61 AATCTTTTTC CTTCTCTCCA TNTTATACAA GCTCTTGGGA AAATTGTATA TAATAGCAAA 121 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 181 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 241 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 301 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 361 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 421 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 481 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 541 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 33951 to 38579): Exon 1 36973 37455 ( 483 n); cDNA 98 570 ( 473 n); score: 0.859 MATCH C08HBa0197J17.1+ SGN-E379618- 0.859 483 0.847 C PGS_C08HBa0197J17.1+_SGN-E379618- (36973 37455) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATAAAATAGC AAATTAATAA TCTAAATTAA ATTAAATAGC TAGGGTTTGA 37032 |||||||||| ||| |||||| ||| || ||| ||| || ||| || | |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 156 TTTAATTGTG CTCTATAGCA AACATTGACA AAAATTTGCC AGGCGTCTCT CTCCCAGAAG 37092 |||||||||| ||| |||||| ||| || | ||| |||| | ||||||||| |||||| || TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 216 TCTCGCTCGT CACTCTCCCA T-T--CTCGC CTCTCTCGCT TTATACACAG AAGTGTATAA 37149 ||||||||| |||||||| | | ||||| || ||||||| ||||||||| |||||||||| TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 276 TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATGTAT 37209 ||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||| ||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 336 ATCTTCGTGT TATACACTTA ATTATATAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 37269 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA 396 GAAAAAGGCC AAAGAATTAT ACAATTGTGA ATTATACAAT TGCGAATTAT ACAATTGCAG 37329 |||||||||| || ||||||| ||||||||| ||| | | ||| |||||||| GAAAAAGGCC AACGAATTAT ACAATTGTG- -------AAT T----A-TAT --AATTGCAG 441 TGAAATACAA -TTTGTCTAG CTTTATACAA CAGAAGTATA TATATTGTGT TTGTGTTTTT 37388 |||||||||| ||| |||| |||||||||| ||||||| || |||||||||| || ||||||| TGAAATACAA TTTTCTCTAA CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTT 501 GTATAAAGCG AG--AAAAAC ATATATCTTC TTGCTATACA CTCATAATTA TGCAATATAC 37446 |||||||||| || |||||| |||||| ||| |||| ||||| || ||||||| |||||||||| GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA CTTATAATTA TGCAATATAC 561 ATACATTTT 37455 ||||||||| ATACATTTT 570 hqPGS_C08HBa0197J17.1+_SGN-E379618- (36973 37455) ******************************************************************************** EST sequence 49 +strand 651 n (File: SGN-E394141+) 1 TTTTTTTTTT TTTTTTTTTT CTATCAATGT GATACTGGGG GAATATATAT ATATCTTTTT 61 AATGTTAATT AATCGAAATT GAGAAGCTGA AATTTCACCT ATAACATCAA GTATACACGT 121 TACCTATGCC CTGGTTGTTT ATAGCTGAAT TTCAAGCCCC TTTTCTTATT CTATTATTAC 181 ACCCCTAATG AAATGATTAA GGAACTTATT AAAGCAAAAC AACTAAATTC TTATTTTGCA 241 ATCTTTTCTT GTCATTCACA AGCGATAATT CTAAATCTTT TTCCTTCTCT CCATTTTATA 301 CAAGCTCTTG GGAAAATTGT ATATAATAGC AAACTAGTAA TCTAACTAAA TGGAGTAGCT 361 AGAGTTTGAT TTAATTGTGC TCCATAGCAA ACGTTAGCTA AAGTTTGTCA GGCGTCTCCC 421 TCCCAAAAAT CTCGCTCGCC ACTCTCCATT CTCGCTCGCC TATCTCGCTA TATACACAGA 481 AGTGTATAAA TTCTGTTTCT ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGTA 541 AAAATATATA TCTTCGTGTT ATACACTTAA TTATACAAAT TACAAACATT TTACTTCAAA 601 TATTGCAAAG AAAAAGGCCA ACGAATTATA CAATTGTGAA TTATATAATT G Predicted gene structure (within gDNA segment 31831 to 37975): Exon 1 36973 37311 ( 339 n); cDNA 311 651 ( 341 n); score: 0.881 PPA cDNA 20 1 MATCH C08HBa0197J17.1+ SGN-E394141+ 0.881 339 0.521 C PGS_C08HBa0197J17.1+_SGN-E394141+ (36973 37311) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATAAAATAGC AAATTAATAA TCTAAATTAA ATTAAATAGC TAGGGTTTGA 37032 |||||||||| ||| |||||| ||| || ||| ||| || ||| || | |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 369 TTTAATTGTG CTCTATAGCA AACATTGACA AAAATTTGCC AGGCGTCTCT CTCCCAGAAG 37092 |||||||||| ||| |||||| ||| || | ||| |||| | ||||||||| |||||| || TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 429 TCTCGCTCGT CACTCTCCCA T-T--CTCGC CTCTCTCGCT TTATACACAG AAGTGTATAA 37149 ||||||||| |||||||| | | ||||| || ||||||| ||||||||| |||||||||| TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 489 TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATGTAT 37209 ||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||| ||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 549 ATCTTCGTGT TATACACTTA ATTATATAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 37269 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||| | ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAAA 609 GAAAAAGGCC AAAGAATTAT ACAATTGTGA ATTATACAAT TG 37311 |||||||||| || ||||||| |||||||||| |||||| ||| || GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TG 651 hqPGS_C08HBa0197J17.1+_SGN-E394141+ (36973 37311) ******************************************************************************** EST sequence 31 +strand 605 n (File: SGN-E392605+) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGTG GGAATATATA TATATATCTA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATT Predicted gene structure (within gDNA segment 30621 to 38135): Exon 1 36973 37264 ( 292 n); cDNA 312 605 ( 294 n); score: 0.872 PPA cDNA 19 1 MATCH C08HBa0197J17.1+ SGN-E392605+ 0.872 292 0.483 C PGS_C08HBa0197J17.1+_SGN-E392605+ (36973 37264) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATAAAATAGC AAATTAATAA TCTAAATTAA ATTAAATAGC TAGGGTTTGA 37032 |||||||||| ||| |||||| ||| || ||| ||| || ||| || | |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 370 TTTAATTGTG CTCTATAGCA AACATTGACA AAAATTTGCC AGGCGTCTCT CTCCCAGAAG 37092 |||||||||| ||| |||||| ||| || | ||| |||| | ||||||||| |||||| || TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 430 TCTCGCTCGT CACTCTCCCA T-T--CTCGC CTCTCTCGCT TTATACACAG AAGTGTATAA 37149 ||||||||| |||||||| | | ||||| || ||||||| ||||||||| |||||||||| TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 490 TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATGTAT 37209 ||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||| ||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 550 ATCTTCGTGT TATACACTTA ATTATATAAT TTACAAACAT TTTACTTCAA ATATT 37264 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| ||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATT 605 hqPGS_C08HBa0197J17.1+_SGN-E392605+ (36973 37264) ******************************************************************************** EST sequence 109 -strand 530 n (File: SGN-E393065-) 1 TTCACAAGCG ATAATTCTAA ATCTTTTTCC TTCTCTCCAT TTTATACAAG CTATGGGACA 61 AATTGTATAT AATAGCAAAC TAGTAATCTA ACTAAATGGA GTAGATAGAG TTAGATCTTA 121 TTGTGCTTCA TGGCAAACGT TAGCTAAAGT TGGTCAGGCG TCTGCCTCCC AAAAATCTCG 181 CTGGCCATTT TCCATTATCG CTGGCATATC TCGTTATATA CACAGAAGTG TATAGATTAT 241 GTTTATATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTGAAAA TATATATCTT 301 CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATG GCAGTGAAAA 361 AGGCCAAGGA ATTATGCAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTGTCTAA 421 CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTA GTATAAAGCG AGACAAAAAC 481 ATATATATTC TTGCCATGCG CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 34361 to 38895): Exon 1 36976 37456 ( 481 n); cDNA 60 530 ( 471 n); score: 0.811 MATCH C08HBa0197J17.1+ SGN-E393065- 0.811 481 0.908 C PGS_C08HBa0197J17.1+_SGN-E393065- (36976 37456) Alignment (genomic DNA sequence = upper lines): AAATTGTATA AAATAGCAAA TTAATAATCT AAATTAAATT AAATAGCTAG GGTTTGATTT 37035 |||||||||| ||||||||| || |||||| | | ||||| | ||| ||| ||| ||| | AAATTGTATA TAATAGCAAA CTAGTAATCT A-ACTAAATG GAGTAGATAG AGTTAGATCT 118 AATTGTGCTC TATAGCAAAC ATTGACAAAA ATTTGCCAGG CGTCTCTCTC CCAGAAGTCT 37095 |||||||| || |||||| || | ||| || | |||| ||||| ||| ||| || ||| TATTGTGCTT CATGGCAAAC GTTAGCTAAA GTTGGTCAGG CGTCTGCCTC CCAAAAATCT 178 CGCTCGTCAC TCTCC--CAT -TCTCGCCTC TCTCGCTTTA TACACAGAAG TGTATAATTT 37152 |||| | || | ||| || || || | ||||| | || |||||||||| |||||| || CGCTGGCCAT TTTCCATTAT CGCTGGCATA TCTCGTTATA TACACAGAAG TGTATAGATT 238 CTGTTTCTGT TTTGTATAAA GCGAGAGAAA ATTGTATATA CACATGCAAA AATGTATATC 37212 ||||| | | |||||||||| |||||||||| |||||||||| |||||| || ||| |||||| ATGTTTATAT TTTGTATAAA GCGAGAGAAA ATTGTATATA CACATGTGAA AATATATATC 298 TTCGTGTTAT ACACTTAATT ATATAATTTA CAAACATTTT ACTTCAAATA TTGCAGAGAA 37272 |||||||||| |||||||||| ||| || ||| |||||||||| |||||||||| | |||| ||| TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT ACTTCAAATA TGGCAGTGAA 358 AAAGGCCAAA GAATTATACA ATTGTGAATT ATACAATTGC GAATTATACA ATTGCAGTGA 37332 ||||||||| ||||||| || |||||| |||| | ||| | |||||||||| AAAGGCCAAG GAATTATGCA ATTGTG---- ----AATT-- --A-TAT--A ATTGCAGTGA 403 AATACAA-TT TGTCTAGCTT TATACAACAG AAGTATATAT ATTGTGTTTG TGTTTTTGTA 37391 ||||||| || |||||| ||| |||||||||| |||| ||||| ||||||||| |||||| ||| AATACAATTT TGTCTAACTT TATACAACAG AAGTGTATAT ATTGTGTTTT TGTTTTAGTA 463 TAAAGCGAG- -AAAAACATA TATCTTCTTG CTATACACTC ATAATTATGC AATATACATA 37449 ||||||||| ||||||||| ||| |||||| | || | || |||||||||| |||||||||| TAAAGCGAGA CAAAAACATA TATATTCTTG CCATGCGCTT ATAATTATGC AATATACATA 523 CATTTTA 37456 ||||||| CATTTTA 530 hqPGS_C08HBa0197J17.1+_SGN-E393065- (36976 37456) ******************************************************************************** EST sequence 143 -strand 450 n (File: SGN-E200845-) 1 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 61 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 121 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 181 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 241 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 301 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 361 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 421 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 35151 to 38579): Exon 1 36997 37455 ( 459 n); cDNA 2 450 ( 449 n); score: 0.856 MATCH C08HBa0197J17.1+ SGN-E200845- 0.856 459 1.020 C PGS_C08HBa0197J17.1+_SGN-E200845- (36997 37455) Alignment (genomic DNA sequence = upper lines): TAATAATCTA AATTAAATTA AATAGCTAGG GTTTGATTTA ATTGTGCTCT ATAGCAAACA 37056 || ||||||| | ||||| | ||||||| |||||||||| ||||||||| ||||||||| TAGTAATCTA -ACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 60 TTGACAAAAA TTTGCCAGGC GTCTCTCTCC CAGAAGTCTC GCTCGTCACT CTCCCAT-TC 37115 || | ||| |||| ||||| ||||| |||| || || |||| ||||| |||| |||| | || TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 120 --TCGCCTCT CTCGCTTTAT ACACAGAAGT GTATAATTTC TGTTTCTGTT TTGTATAAAG 37173 |||||| | |||||| ||| |||||||||| |||||| ||| ||||||| || |||||||||| GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 180 CGAGAGAAAA TTGTATATAC ACATGCAAAA ATGTATATCT TCGTGTTATA CACTTAATTA 37233 |||||||||| |||||||||| ||||| |||| || ||||||| |||||||||| |||||||||| CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 240 TATAATTTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAAAG AATTATACAA 37293 || || |||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 300 TTGTGAATTA TACAATTGCG AATTATACAA TTGCAGTGAA ATACAA-TTT GTCTAGCTTT 37352 ||||| |||| | ||| || |||||||||| |||||| ||| |||| |||| TTGTG----- ---AATT--- -A-TAT--AA TTGCAGTGAA ATACAATTTT CTCTAACTTT 345 ATACAACAGA AGTATATATA TTGTGTTTGT GTTTTTGTAT AAAGCGAG-- AAAAACATAT 37410 |||||||||| ||| |||||| |||||||| | |||||||||| |||||||| |||||||||| ATACAACAGA AGTGTATATA TTGTGTTTTT GTTTTTGTAT AAAGCGAGAC AAAAACATAT 405 ATCTTCTTGC TATACACTCA TAATTATGCA ATATACATAC ATTTT 37455 || ||||||| ||||||| | |||||||||| |||||||||| ||||| ATATTCTTGC CATACACTTA TAATTATGCA ATATACATAC ATTTT 450 hqPGS_C08HBa0197J17.1+_SGN-E200845- (36997 37455) ******************************************************************************** EST sequence 112 -strand 325 n (File: SGN-E393076-) 1 CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 61 AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 121 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 181 ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 241 TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 301 AATTATGCAA TATACATACA TTTTA Predicted gene structure (within gDNA segment 36132 to 38589): Exon 1 37120 37456 ( 337 n); cDNA 1 325 ( 325 n); score: 0.868 MATCH C08HBa0197J17.1+ SGN-E393076- 0.868 337 1.037 C PGS_C08HBa0197J17.1+_SGN-E393076- (37120 37456) Alignment (genomic DNA sequence = upper lines): CTCTCTCGCT TTATACACAG AAGTGTATAA TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG 37179 || ||||||| |||||||| || |||| |||||||| | |||||||| |||||||||| CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 60 AAAATTGTAT ATACACATGC AAAAATGTAT ATCTTCGTGT TATACACTTA ATTATATAAT 37239 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| |||||| || AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 120 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AAAGAATTAT ACAATTGTGA 37299 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ||||||||| TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTG- 179 ATTATACAAT TGCGAATTAT ACAATTGCAG TGAAATACAA -TTTGTCTAG CTTTATACAA 37358 ||| | | ||| |||||||| |||||||||| ||| |||| |||||||||| -------AAT T----A-TAT --AATTGCAG TGAAATACAA TTTTCTCTAA CTTTATACAA 225 CAGAAGTATA TATATTGTGT TTGTGTTTTT GTATAAAGCG AG--AAAAAC ATATATCTTC 37416 ||||||| || |||||||||| || ||||||| |||||||||| || |||||| |||||| ||| CAGAAGTGTA TATATTGTGT TTTTGTTTTT GTATAAAGCG AGACAAAAAC ATATATATTC 285 TTGCTATACA CTCATAATTA TGCAATATAC ATACATTTTA 37456 |||| ||||| || ||||||| |||||||||| |||||||||| TTGCCATACA CTTATAATTA TGCAATATAC ATACATTTTA 325 hqPGS_C08HBa0197J17.1+_SGN-E393076- (37120 37456) ******************************************************************************** EST sequence 111 -strand 308 n (File: SGN-E393075-) 1 AAAAAAAAAA AAACCTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG TATATACACA 61 TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA CATTTTACTT 121 CAAATATTGC AGAGAAAAAG GCCAACGAAT TATACAATTG TGAATTATAT AATTGCAGTG 181 AAATACAATT TTCTCTAACT TTATACAACA GAAGTGTATA TATTGTGTTT TTGTTTTTGT 241 ATAAAGCGAG ACAAAAACAT ATATATTCTT GCCATACACT TATAATTATG CAATATACAT 301 ACATTTTA Predicted gene structure (within gDNA segment 36302 to 38589): Exon 1 36769 36779 ( 11 n); cDNA 1 11 ( 11 n); score: 0.909 Intron 1 36780 37147 ( 368 n); Pd: 0.539 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 37148 37456 ( 309 n); cDNA 12 308 ( 297 n); score: 0.879 MATCH C08HBa0197J17.1+ SGN-E393075- 0.879 320 1.039 C PGS_C08HBa0197J17.1+_SGN-E393075- (36769 36779,37148 37456) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA TGTATTTATA CATAATTTTA ATTTTTTTTA GATATTATAA TCTTTTTATA 36828 |||||||||| AAAAAAAAAA A......... .......... .......... .......... .......... 11 TTTTAACAAT TTATGGTCAA ATATTAAAAT AAATTAAAAA ATTAAAAATT GGAAAACATG 36888 .......... .......... .......... .......... .......... .......... 11 TTAAAGGTGA AGGACACGAG TCACACATGT AAGATCTTGG TCAATGCAGA TGGGCCGTCC 36948 .......... .......... .......... .......... .......... .......... 11 AATTACTGTT GCCGTATTAA AAAGGGAAAA TTGTATAAAA TAGCAAATTA ATAATCTAAA 37008 .......... .......... .......... .......... .......... .......... 11 TTAAATTAAA TAGCTAGGGT TTGATTTAAT TGTGCTCTAT AGCAAACATT GACAAAAATT 37068 .......... .......... .......... .......... .......... .......... 11 TGCCAGGCGT CTCTCTCCCA GAAGTCTCGC TCGTCACTCT CCCATTCTCG CCTCTCTCGC 37128 .......... .......... .......... .......... .......... .......... 11 TTTATACACA GAAGTGTATA ATTTCTGTTT CTGTTTTGTA TAAAGCGAGA GAAAATTGTA 37188 | | ||||||| || ||||||| |||||||||| |||||||||| .......... .........A ACCTCTGTTT CTATTTTGTA TAAAGCGAGA GAAAATTGTA 52 TATACACATG CAAAAATGTA TATCTTCGTG TTATACACTT AATTATATAA TTTACAAACA 37248 |||||||||| |||||| || |||||||||| |||||||||| ||||||| || ||||||||| TATACACATG TAAAAATATA TATCTTCGTG TTATACACTT AATTATACAA ATTACAAACA 112 TTTTACTTCA AATATTGCAG AGAAAAAGGC CAAAGAATTA TACAATTGTG AATTATACAA 37308 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||| | TTTTACTTCA AATATTGCAG AGAAAAAGGC CAACGAATTA TACAATTGTG AATTAT---A 169 TTGCGAATTA TACAATTGCA GTGAAATACA A-TTTGTCTA GCTTTATACA ACAGAAGTAT 37367 | | | | |||| |||||||||| | ||| |||| ||||||||| |||||||| | -T----A--A T-----TGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 217 ATATATTGTG TTTGTGTTTT TGTATAAAGC GAG--AAAAA CATATATCTT CTTGCTATAC 37425 |||||||||| ||| |||||| |||||||||| ||| ||||| ||||||| || ||||| |||| ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 277 ACTCATAATT ATGCAATATA CATACATTTT A 37456 ||| |||||| |||||||||| |||||||||| | ACTTATAATT ATGCAATATA CATACATTTT A 308 hqPGS_C08HBa0197J17.1+_SGN-E393075- (37148 37456) ******************************************************************************** EST sequence 9 +strand 680 n (File: SGN-E379427+) 1 ACTTCAAATA TTGTTCAGAA AAAGGGCAAC GAATTATACA ATTGTGAATT ATATAATTGC 61 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 121 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 181 ACATACATTT TAATTCGATT CAACGGTATG CAAAGCAAAT TTATAAAAAT ATTGCAGCGA 241 AATAAGCAGC GATTTATACG ATTGTGCATT ACACAATCGC AGTGAATGAA GATAGCGAAT 301 TATACAATTG CAGCGAAATA GGCCATCAAA TTATACAATT TAGGCCAGCG AATTATACAA 361 TTGTATATGT ATAGCGAATT ATACAGTTTT ATGTTTGCTA TGGAGCGCAA TTATGCAAAC 421 TTTGTTATAA CATACAAATA TGAATTTTTT ATTTGCTATA CGTGAAAGTT GCCCTTAATT 481 AAATGCTCCA CAGTCTATAC GAATATTTCC ATTCTTACCC GTCTTCACAC CAACTCGGCC 541 CAATTTAGTC ATCGCATTAA CAAATGCGGT TTCAAAAACT TTAGAATTAC TGGCCCACAA 601 ATTAACAGTA CCTTTAGACC TTTGGTCTGT GAACAAAACT TGATCTGATG TGAATAGGCC 661 CATTCCGTTT TGCAAGTTTT Predicted gene structure (within gDNA segment 36182 to 40824): Exon 1 37121 37342 ( 222 n); cDNA 76 295 ( 220 n); score: 0.628 Intron 1 37343 37479 ( 137 n); Pd: 0.000 (s: 0.68), Pa: 0.601 (s: 0.94) Exon 2 37480 37660 ( 181 n); cDNA 296 475 ( 180 n); score: 0.917 MATCH C08HBa0197J17.1+ SGN-E379427+ 0.758 403 0.593 C PGS_C08HBa0197J17.1+_SGN-E379427+ (37121 37342,37480 37660) Alignment (genomic DNA sequence = upper lines): TCTCTCGCTT TATAC-ACAG AAGTGTATAA TTTCTGTTTC TGTTT-TGTA TAAAGCGAGA 37178 ||||| ||| ||||| |||| ||||||||| || ||||| ||||| |||| |||||||||| TCTCTAACTT TATACAACAG AAGTGTATAT ATTGTGTTTT TGTTTTTGTA TAAAGCGAGA 135 GAAAATTGTA TATACACATG -CAAAAATGT ATATCTTCGT GTTATACACT TAATTATATA 37237 |||| || |||| | || || | | | ||| | | |||||| | || || CAAAAACATA TATATTCTTG CCATACACTT ATAATTATGC AATATACATA CATTTTAATT 195 ATTTACAAAC ATTTTACTTC AAATATTGCA GAGAAAAAGG CCAAAGAATT ATACAATTGT 37297 | | ||| | | | | ||| | | ||| | || ||| ||| | | CGATTC-AAC GGTATGCAAA GCAAATT-TA TAAAAATATT GCAGCGAA-- ATA-AGCAGC 250 GAATTATACA ATTGCGAATT ATACAATTGC AGTGAAATAC AATTTGTCTA GCTTTATACA 37357 || |||||| |||| | ||| | ||||| || |||||| | || GATTTATACG ATTGTGCATT ACACAATCGC AGTGAATGAA GATAG..... .......... 295 ACAGAAGTAT ATATATTGTG TTTGTGTTTT TGTATAAAGC GAGAAAAACA TATATCTTCT 37417 .......... .......... .......... .......... .......... .......... 295 TGCTATACAC TCATAATTAT GCAATATACA TACATTTTAA TTCGATTCAA CTGTATGCAA 37477 .......... .......... .......... .......... .......... .......... 295 AGCTAATTAT ACAATTGCAG CGAAATAGGC CAGCGAATTA TACAATTTAG GCCAGCGAAG 37537 | |||||| |||||||||| |||||||||| || | ||||| |||||||||| ||||||||| ..CGAATTAT ACAATTGCAG CGAAATAGGC CATCAAATTA TACAATTTAG GCCAGCGAAT 353 TATACACTTT TATATGTATA GCGAATTATA CAATTTTTAT GTTTGCTATG GAGCGCAATT 37597 |||||| || |||||||||| |||||||||| | | |||||| |||||||||| |||||||||| TATACAATTG TATATGTATA GCGAATTATA C-AGTTTTAT GTTTGCTATG GAGCGCAATT 412 ATGCAAAGTT TGCTATATTA TACAAATATG ATTTTTTTGT TTGCTATATG TGAAAGTTGC 37657 ||||||| || || |||| | |||||||||| | |||||| | |||||||| | |||||||||| ATGCAAACTT TGTTATAACA TACAAATATG AATTTTTTAT TTGCTATACG TGAAAGTTGC 472 CCT 37660 ||| CCT 475 hqPGS_C08HBa0197J17.1+_SGN-E379427+ (37480 37660) ******************************************************************************** EST sequence 114 +strand 780 n (File: SGN-E543331+) 1 CATAAACATG CTTAATTAGT TCTTGTTCAT CCATTTTCTT GTTTATTTGA GCCAATAATT 61 AATCAAATCA CAATTTACTA TGGAGGAAAT TTCTGAAGGA ATTCGAGCAA CTTCGTTAAG 121 GATCAATGAT TGTCCATCAC CATTACCATC CGCTATTGCT TCGTCTGCTA CTCCTCAAAA 181 ACACTTAAAA TGCTTTATCA GCGTACATTT CGTGCAAAAG GTATTTAAAT TCACAAAATT 241 CATCTTAATG ATTAAATTTG AGTCTCGAAT TTTCAAGTGT CAGATGAGCA GGTTGAGTCA 301 ATTTCGACGA GTTTTAGTTA TATAGATGGT GATGTTTGAG CTCAAACCAA AATGGAATCA 361 TTCAAGATTT TGGATCCATG AACCATTGTC TGATGATATG AATTGTATAA TTACATCATT 421 TATGTTGGAT TTTATTTTGT CCTAAATTTC TTATCATAAA TAGGTTTTTC TTTTAGGAAA 481 AAAGTTTTGA ATTGACTAAT TCTTTTTCTG GTAGGAAAAT GTTCCCGTGT ATTCTTAGTG 541 AATTGGTTGA GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTAATAGT GGATTGCTCA 601 TCTCCATTGT GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG TCTTTTGGTA 661 TATTTCTCGT TGTCTTTCAT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GCTTTCCGCG 721 TTTACCCTGC TTATTTCCGG TTCTAACAAT TTAAACGCGA AAACATTGTT ATTGTAGTTG Predicted gene structure (within gDNA segment 85930 to 76843): Exon 1 84998 84980 ( 19 n); cDNA 393 410 ( 18 n); score: 0.632 Intron 1 84979 83762 (1218 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 83761 83730 ( 32 n); cDNA 411 441 ( 31 n); score: 0.656 Intron 2 83729 81181 (2549 n); Pd: 0.900 (s: 0), Pa: 0.320 (s: 0) Exon 3 81180 81172 ( 9 n); cDNA 442 451 ( 10 n); score: 0.611 Intron 3 81171 80686 ( 486 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 4 80685 80658 ( 28 n); cDNA 452 479 ( 28 n); score: 0.750 Intron 4 80657 78825 (1833 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.70) Exon 5 78824 78781 ( 44 n); cDNA 480 523 ( 44 n); score: 0.705 Intron 5 78780 78645 ( 136 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.90) Exon 6 78644 78421 ( 224 n); cDNA 524 749 ( 226 n); score: 0.868 MATCH C08HBa0197J17.1- SGN-E543331+ 0.868 356 0.456 C PGS_C08HBa0197J17.1-_SGN-E543331+ (84998 84980,83761 83730,81180 81172,80685 80658,78824 78781,78644 78421) Alignment (genomic DNA sequence = upper lines): ATTATATTGG TTGTTGAGAG TGTGAGTGCT ATGTTGAACC ATGACAGAAA GATCAGAAAG 84939 || |||| |||| | | ATGATATGAA TTGTATA-A. .......... .......... .......... .......... 410 TTGGTTGCAA CTACATAAGC TTGAGATCTA AACATCATAT ACGAGTTCAA TCCGATTATT 84879 .......... .......... .......... .......... .......... .......... 410 CATGATCATT TTTTTTGCCA GACAGATCCA TATTGCCGTT GGTTGCAGTT TCTTTAGATC 84819 .......... .......... .......... .......... .......... .......... 410 AACTCCATTG CAACTTAACT GGGTCTGAGT TTGCTTCCAT GATATAGGGT TTCTACTTGT 84759 .......... .......... .......... .......... .......... .......... 410 GGCTTTATGG AATGGCCATT TAACGGATGT GTCGTAACAC GTGATAACTC ATACCAAATC 84699 .......... .......... .......... .......... .......... .......... 410 ATTGAATTCT GGCTTTTACA CGCAAGTTGT ATGCTAATGT AATCTCTCTC TGATCGATTA 84639 .......... .......... .......... .......... .......... .......... 410 TAATTTACAA TGTGCTTGGT TCTATTCTCA TGAATTGATA CATGGCTTGA TGACGAGCTT 84579 .......... .......... .......... .......... .......... .......... 410 TAGCCTAGCC TGACCCCAGT CGACATAGAA GCGGAGCTAA ATGAGAAAGT CTATTCATGA 84519 .......... .......... .......... .......... .......... .......... 410 AAAAGAGATA CTCTAAGCAA GAAGTGTTAG ATACACCTTG GTATGCTATT CCTAGTCTGT 84459 .......... .......... .......... .......... .......... .......... 410 CCATGGAAGA AGTGTTCACT TGCTTACGAC ATCTTCATTC ACTCGTCTTG CTATTTTAGA 84399 .......... .......... .......... .......... .......... .......... 410 ATGGGAAAGA ATCTTCATTC GAGTTATCTT TGTTTGCTCC ATCACCCATT TTACCACTCA 84339 .......... .......... .......... .......... .......... .......... 410 ATCTCAACTT AATAGTACAT TTTTCTCACG TCGATATATT AGAACAGAAC TGAGTAGCAA 84279 .......... .......... .......... .......... .......... .......... 410 TAGTTAGAAG ACAACTATTT GAATTGTGTC TTTTTGGTTC AGACGACTAC TGCCTAATCC 84219 .......... .......... .......... .......... .......... .......... 410 AAGTAATATA CTAATTGGGC TTACTTTCTG TCAGCCCATT TATCTGTAGG ACTGCAAACC 84159 .......... .......... .......... .......... .......... .......... 410 AGAGAATGAT ATTTTCTAGA GGAAACAACA CAAATTCTGC GAGTTTAAAT CGTATACAAA 84099 .......... .......... .......... .......... .......... .......... 410 TTATCTTTTG TACCACTTTT TGTTCGCTAG ATACATGTAT CTGACTGGCT CAGATACATG 84039 .......... .......... .......... .......... .......... .......... 410 CGGGTCAAAT TAGGTGCAAT TTGTTTTAGA TACACTATAT TCAAGCATGA TTTGCATGTA 83979 .......... .......... .......... .......... .......... .......... 410 TTTGGAATAT ATTGACTCTC TCGTTTGCCT TTAAGCTATC TCGCTTGTCT CTTTCCTCTC 83919 .......... .......... .......... .......... .......... .......... 410 TCACTTGCTT TTATCCTGTT TTGCTCGCAT CTCTCACTAT GTATTTATAT TTCAAAATAT 83859 .......... .......... .......... .......... .......... .......... 410 ATTTGAGTTT CTCAAATTTT GTATAATTGT ATATATAGAT TCAGTTTCAT CTATCTTTCT 83799 .......... .......... .......... .......... .......... .......... 410 ATTAAAAATC AATTTCATCT AGCGTATCCA ATGTCAGTTT CATCAGGTAT CTAGTATCAT 83739 || ||||| ||| | | || | .......... .......... .......... .......TTA CATCATTTAT GTTGGATTTT 433 ATATTTGGTG TATCATTTCA TAGATACATG TATATATTAT TATCAAAAAA ATGCATAGAT 83679 || |||| AT-TTTGTC. .......... .......... .......... .......... .......... 441 ATATTCATCA GCGTATTCAT GCATAGAGAG ATCAAGGAGG GAAGGGCACA AGGATTGTCG 83619 .......... .......... .......... .......... .......... .......... 441 AGAAGATTTA GTAGATGTTT GTCTAATTAC AACTCTTATG TCTGACATAT AATAATTTGT 83559 .......... .......... .......... .......... .......... .......... 441 AGCTATGATT TGTAAATACG TTAATTGTAG TCACATTTTT TAATCACTCT AAACAAAAGC 83499 .......... .......... .......... .......... .......... .......... 441 TATTTATGTT TTTTTCTCTT TTTTGTTTTC TTTGTTGTCA ATTAGACAAA CAAAATTTTG 83439 .......... .......... .......... .......... .......... .......... 441 AGACAGTTTG GTGAAGAATA TACTATGTTT TGATTAGAAT TTTAGATTAA AACTTAAAAA 83379 .......... .......... .......... .......... .......... .......... 441 GAGGACGAAG AACAATATGT TCTACGTCGA ATATGTCCAA TATATCAGCA GACATACTAT 83319 .......... .......... .......... .......... .......... .......... 441 GACATATATA CATCATACAA AATCATATAC ACTACATATA ATAACAGAAA TGTTTATTTT 83259 .......... .......... .......... .......... .......... .......... 441 TACCAAATTA TATTATGTTT TGTAAATACT ATTGTAGCTT TTGTATGTCA TTTCCTCCCT 83199 .......... .......... .......... .......... .......... .......... 441 TTTTGTTGTT AAATTTTACT GGACTAATAA ACAAAGTTGA AAGGTGGCAA AAGTTAGGCA 83139 .......... .......... .......... .......... .......... .......... 441 AAGAGGTTGG GGGTGGGGGT GGGGGGTTGG TACCGGGGAA CCAAAAAATG TCTGCTAGTT 83079 .......... .......... .......... .......... .......... .......... 441 AATAGCTTTG TCCCTTTTGA TGTCATCAAC ATAGAATAAA AAAGTGTATA CAAGTAAAGA 83019 .......... .......... .......... .......... .......... .......... 441 ATACAAGTTA AAATTGGGTC AAAGCATGTG ATATACAAAT GAAAAATTGC AAATGAAGTA 82959 .......... .......... .......... .......... .......... .......... 441 ATTGAGTATA GTTGTATTTC CTTTTAGCTT GATCAATGTC TTTTGACTTA TATTCTTAAC 82899 .......... .......... .......... .......... .......... .......... 441 AAGAAAGAAA CAAAGTTTTA TGGTCCCTAG GTTTTGTTTA TATCAAGTCA TGCATGATAT 82839 .......... .......... .......... .......... .......... .......... 441 CACCTTAAGC AATTTTTTTA ATCAACTATG GAAAAGTATG CTTACTTATT TTTCCGGGGA 82779 .......... .......... .......... .......... .......... .......... 441 AGATAATTAA TTACAGGAAG TCTTTTAGAA ACAACTTTTC TTTTTATTTC AGAGTTTATG 82719 .......... .......... .......... .......... .......... .......... 441 ATAAAGATTG TGTACATTTT ATTTTTTAAA ATGTTAATTT ATGAAATTTT ACTAAATATA 82659 .......... .......... .......... .......... .......... .......... 441 TTGTTATTAG AAAATAATAA TTCTATTTTC TACAGCTTAA TTTATATGGT TAAGAGGGTG 82599 .......... .......... .......... .......... .......... .......... 441 ATCATCCACA TCCTTGATTA ATCCCTCTCC TTCCTCTTTA ATGTTTTCTG AGTAGAATCA 82539 .......... .......... .......... .......... .......... .......... 441 TTTATCTAGT GCAGTTTATA AACTATTACG CAATAAGTGA GTGTTTTACC TAGTTTGCAC 82479 .......... .......... .......... .......... .......... .......... 441 AAAGTGCTCA CTCAAAGGGC AAAGTTATGA TAGAGGTTAT AGAGATTACC GCTTATCCTT 82419 .......... .......... .......... .......... .......... .......... 441 GAATTTTAAA AAAATTATTT AATTTTAACA TTAACGTGAT ATATTCAATT TATTTTTTAA 82359 .......... .......... .......... .......... .......... .......... 441 GAACTCTTTA ATTTATTTAT TCTTAATTAA AATTACATGA CTAAAAAAAA TATGATTTTC 82299 .......... .......... .......... .......... .......... .......... 441 TTTTTAACTT CATAACAAAT CAAAATCAGT TTAATAAAGT TATGAGGGAA GGAATATGCT 82239 .......... .......... .......... .......... .......... .......... 441 TTAAGTGATT TTTAATACGT AAATAGAAAA AGGGATAAAA TGATTTCTAC ATTCTTGACT 82179 .......... .......... .......... .......... .......... .......... 441 CTAAAGATGC CATAAAAGCT CAATTGGACA GTTGTCTATG ATTGATTTCA CGTGTGTTGA 82119 .......... .......... .......... .......... .......... .......... 441 ACAAAACTTT GTTAACACAT TTCTGAATTT CACTTTCTTG GATAATAAGT AGTCGGCTAC 82059 .......... .......... .......... .......... .......... .......... 441 TGATTTATTA CTTTAAATAT TCAATGTTTC CCTTCTCAAT TTATCTTACT TATATAATTA 81999 .......... .......... .......... .......... .......... .......... 441 GAATTTTAAG AGTCTATTTT TTTTTTTTGG ATATGTACCA TAAGCACAGA CAAACTAATC 81939 .......... .......... .......... .......... .......... .......... 441 ATTAATAACT AATTAATTGG ATATTTACGA TAAGCACATA CAAACTAATC AAGTAATTTT 81879 .......... .......... .......... .......... .......... .......... 441 CATGAGATAA CACCTCGCCT GAGTTGTATA CATACATGTA TATGTACATA TACATATAAT 81819 .......... .......... .......... .......... .......... .......... 441 AACAACTATA AGTCTACGAC ATCGACGATG AATTTCGGAG AGGATATATA GTAATCGCTA 81759 .......... .......... .......... .......... .......... .......... 441 CAAATAAAGA TAATTTCACT GAAATTTATA CTATGTTTAA CATAATCTTT CTACTCTATT 81699 .......... .......... .......... .......... .......... .......... 441 TAGACAACTC GCTCATTGAA AAAATCACAT AATGACAAAC AAATACATTG AAATACTGAA 81639 .......... .......... .......... .......... .......... .......... 441 AATAGTTGTT CAACATTTTT CTTTCTCATT AATTTAATTA AAAAATCTAT GGAAATAGTG 81579 .......... .......... .......... .......... .......... .......... 441 ATTTTATATT TTTGAGTGAA ATATAATGAT TTTTAGTAAA ATTCTGCACA AACCTTATCA 81519 .......... .......... .......... .......... .......... .......... 441 AAATATATAC ATGCATCTAT ATATATGTAC ATATAATGAC AAATTGAGTT TTGCTTCATG 81459 .......... .......... .......... .......... .......... .......... 441 CATCTTCTTG AATCCTTCAC CAAGAACTAT ACGTGTGTGT ATGATGAAAC ATTGATTTTT 81399 .......... .......... .......... .......... .......... .......... 441 GCTTCATGCA TGTTCTTGAA TCCTTGATCA CCAAAAACTA TACGTGTTGC TGACTTGCTA 81339 .......... .......... .......... .......... .......... .......... 441 TATATGAATT TTTTTTTATA AAAGAATTTA ATTCAACAAT CATCTTAGCA TAATGTTTAT 81279 .......... .......... .......... .......... .......... .......... 441 AATGTCCTCG AATTCAGTAG AGCCTTATTA ATATTGTTAT TAATTATTTA TATCATGCAT 81219 .......... .......... .......... .......... .......... .......... 441 CATTTAGTTT CATTACTTAA TTTTTTATTT ATTCATAGCT AAA-TTCAAT ATACTTCATT 81160 || ||| ||| .......... .......... .......... ........CT AAATTTCT.. .......... 451 TAATTCTACT CGAAATGATC ACTTAGGGTG CAACAGCAGC TAAAAAAAAG GTTTCCTCGT 81100 .......... .......... .......... .......... .......... .......... 451 TTAATTACTA TTTACTCACT TCAATAATAT TTATCCACGA TGAACTTCGT ATATTCTTAA 81040 .......... .......... .......... .......... .......... .......... 451 AAAGTTATAA ATAGAAAAAT AATTTACTAT ATTATTATTT GAATATAATA CATATAATGT 80980 .......... .......... .......... .......... .......... .......... 451 CTTAAAATGT AATAGAAAAA TAACACGAAC GATAAATTAG AAATTAAATG TAAAATTATC 80920 .......... .......... .......... .......... .......... .......... 451 TGCTCATTTC ATAAAGTAGA CAAATATTAT TAGACATCTC AAAATAATAC GCTCTCAATT 80860 .......... .......... .......... .......... .......... .......... 451 CACTTTTACT TGTCATTTAT TCCTTAAATA AGTTTACAAT TTTTACTTGT TACGTTTGAT 80800 .......... .......... .......... .......... .......... .......... 451 ATATTAAGAA AAAGAACAAT GAGTAATTTT TTTTCATGTT TTACCTTCAT CATTATATAC 80740 .......... .......... .......... .......... .......... .......... 451 TTATTATCAA AATCATTTCA AGAAATCATT CAATAGGGAA TATTGATAAA ACACTTTCAT 80680 | |||| .......... .......... .......... .......... .......... ....TATCAT 457 AATTACTTTT TTTTTTTAAT AATATATCAA ATCAAATCAG GATAAGTAAA ACAAATAAAA 80620 || || ||| || ||||| || AAATAGGTTT TTCTTTTAGG AA........ .......... .......... .......... 479 AAGTTACACA AAATAATTAT CGTATGACGA AAAGAGTAAT AAACAAGACA AATTATATAC 80560 .......... .......... .......... .......... .......... .......... 479 TCATGTAGTG TAAAAGTTAG TATTTCTTTA CGATAGTGCA ACGCATGTGA GATGTCCTCG 80500 .......... .......... .......... .......... .......... .......... 479 GTTTCGTAAA TTAATAATAA GCTATTTTAA AGTTCATATG GGGAGAAAAT GAAGTCATAA 80440 .......... .......... .......... .......... .......... .......... 479 ACACCAGTTT ACAAATATTC TTAAAAAATA TCATAACTAT ATGATTCTCT CTTTTTAATC 80380 .......... .......... .......... .......... .......... .......... 479 CTATTATAAA TCCTCAATTG TCACAATTAT GAGTAGAAAA AATTTAACAA ACATAGTAAC 80320 .......... .......... .......... .......... .......... .......... 479 AAAAAAGAAT TAAATAGCGC GTAATAATAC TTATACCAAA CTAAATCAGG GATGAATTCA 80260 .......... .......... .......... .......... .......... .......... 479 AGAGTAAAAT ATACAAATTT ACATTCCGAA TCCTATTATT GTCATTATTA CTGAGTCTGA 80200 .......... .......... .......... .......... .......... .......... 479 TATTAATTAT TTTTTATTTA TTTAAGATTT TTTTGACTCG TATATGAAGT TAAGAACCAA 80140 .......... .......... .......... .......... .......... .......... 479 AATTATAAAA TTTAAATAAA TTCATTAATT ATACACAAGA TGCTTGCCCT TACTAATGGT 80080 .......... .......... .......... .......... .......... .......... 479 TGTGGATAAG TGAACGTGGC ACTAAAAAGC TCCACAAATG ACTATATATA ATACTCCCTC 80020 .......... .......... .......... .......... .......... .......... 479 CATTAAAAAA GAATGACCTA ATTTGATTTG GAACGGAGTT TAAGAAAGAA GATTTTTTAA 79960 .......... .......... .......... .......... .......... .......... 479 ATTGTGATTC TAAATTAAAG TTATGTCAAA CATACCAAAA TGTTCTTTAA CCTTGTGGTC 79900 .......... .......... .......... .......... .......... .......... 479 TTAAACACGC CACGTGGAAA GAAAAGTTAA AATATTGCCA AAAATGAAAT AGGTCATTCT 79840 .......... .......... .......... .......... .......... .......... 479 TTTTAAAACA AACTAAAAAA AAATAAAGTT ATTCTTTTTT AAACGGAGAA AATATACGTA 79780 .......... .......... .......... .......... .......... .......... 479 TATTATAGTC AATACTTCTA TATTATTTAC CTATATTGTG TATTTGATAT CTGACTAAAT 79720 .......... .......... .......... .......... .......... .......... 479 TTGAATTCTT AATTTATGTA CTTTTTTATA TGTATTGAAG TTTCATTAAA TTATAATTGT 79660 .......... .......... .......... .......... .......... .......... 479 CATATTTCAA AATTTGTTTT TAGGATAATA CCCTGTCATG ATTTTTCCCT TTTTAAGCTC 79600 .......... .......... .......... .......... .......... .......... 479 TTAAACTAAA AACTTTATTA AGAATGAACA AATCTCAGTT ATCTCATTAC AAATCATATT 79540 .......... .......... .......... .......... .......... .......... 479 TATTTCACTT CATTCATACA TCATCAGTAC ATGGTATAGT TGATTATAGT ACTCTAATTA 79480 .......... .......... .......... .......... .......... .......... 479 ATAGCATAAA CTTGCATTAA CTTAATTAGT AAGATCAGTT TCATTACGTG ATAAATTATA 79420 .......... .......... .......... .......... .......... .......... 479 TTACTACTGC AACTAGCAAA TGTTCGTGCA TAAGTGAATG TGGCACTAAA AAATAAAAAT 79360 .......... .......... .......... .......... .......... .......... 479 ACCGTTTGGT TATCGAGGAA ATAATACTGG TACTAATTTA TACCCTCTTT TGGTTGACAT 79300 .......... .......... .......... .......... .......... .......... 479 CATCATTTCT GGTATATAGA ATTACTAATA TTTATGAATT TTTATATCGT AATATCGATA 79240 .......... .......... .......... .......... .......... .......... 479 TAATTTTTTA ATTTTTACTG TGTAATAATT TATACAAAGA TAAAACACTT GAGCAAAATA 79180 .......... .......... .......... .......... .......... .......... 479 ACTTGGATTT CGATAGTCTC TGTTTATTAC CTTAAAATAT AAGATCACAG TCCATAATTC 79120 .......... .......... .......... .......... .......... .......... 479 TCACACTATA ATTTTCGCGT AATTTGTCTG CGAACGAAAC GTTTTTTTAA TTGTTTTAGT 79060 .......... .......... .......... .......... .......... .......... 479 AGATTTTATT TATATGCATG TATGAGGAGA GAAGGAACTT ATATTATATT TCTTATCATT 79000 .......... .......... .......... .......... .......... .......... 479 AAAACGTGCA GAGCAGAACA AATTGTCAAA CTCTAATATT AGTGGCAGTA AGGCAATTTA 78940 .......... .......... .......... .......... .......... .......... 479 TGCCCTAGTA CCTATTGAAT TATATGTTAT TTTCTAATTT TTAGTGTACT GATTCAAATT 78880 .......... .......... .......... .......... .......... .......... 479 TCTTCCTTAT CTTTTATCTT ATTTTAATGG TAGAATGGAA TTCATATTAA TAGAGAAATG 78820 ||| | .......... .......... .......... .......... .......... .....AAAAG 484 TTCCTTCTAA ATTAATCCTT TTTCTAGTAG GAAAAGATTT AGAACTCTAT AAATAGAGAA 78760 || | | |||| ||| ||||| |||| ||||| || TTTTGAATTG ACTAATTCTT TTTCTGGTAG GAAAATGTT. .......... .......... 523 ATGTTCCTTC TAACTTAATC AACATTCACA ATGTAGTCTT AAGGGCTTTG AGAGTTTTGA 78700 .......... .......... .......... .......... .......... .......... 523 TTAAGGGGAG AATTTGTGGG TCACAAGCTT GATACGTTAT CACTTGCGTG AACCTCCCAT 78640 ||| | .......... .......... .......... .......... .......... .....CCCGT 528 GTATTCTGAG TGAATTGTTT GAGGTTGTTT TCCTCTGTAT TTTGTACTCT CATATTTATA 78580 ||||||| || ||||||| || |||||||||| |||||||| |||||||||| |||||| ||| GTATTCTTAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT CATATTAATA 588 GTGAATTGTT CATCT-CTTT GTGGACGTAC GTCGATTGAC CGAACCACAT TAAATTTTTG 78521 ||| |||| | ||||| | || ||||||||| |||||||||| |||||||| | ||||| |||| GTGGATTGCT CATCTCCATT GTGGACGTAG GTCGATTGAC CGAACCACGT TAAATCTTTG 648 TGTCTTTTGG TATATTTCTC GTTGTC-TTC TTACTCGTGG CCTTTCGAGA TTCGCTTTGC 78462 |||||||||| |||||||||| |||||| ||| ||||||||| |||| ||| || ||||||| TGTCTTTTGG TATATTTCTC GTTGTCTTTC ATACTCGTGG TCTTTTGAGG TTTGCTTTGC 708 TAGC-TTCCG CGTTTACATC TACTTATTTT CGGTCCTAAC AA 78421 |||| ||||| ||||||| | | ||||||| |||| ||||| || TAGCTTTCCG CGTTTAC-CC TGCTTATTTC CGGTTCTAAC AA 749 hqPGS_C08HBa0197J17.1-_SGN-E543331+ (80685 80658,78824 78781,78644 78421) ******************************************************************************** EST sequence 17 -strand 595 n (File: SGN-E271645-) 1 CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 61 ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AAGTTTGCTT 181 TGCTAGCTTC CGCATTTACA CCTGCTTATT TCGATCCTAA CAAGTGGGTA TTAGAGCCAT 241 TTAATGACAG AGGTCAGGTT CAGTGGTTCG ATAATCGATT ATTGGACCAG GTTAGAAAGA 301 GGGTGGTGGT TCATCTTGAC AGGTGGTAGG TTCTAGCCGC AATCTTTTTG ACAGTAATGA 361 AGATTTTGTT GGAGAAATTG TTTCAGAGAG GTTTTCTATG GTTGAGACAT AAATTTTACA 421 AAGGAGATTA AGAAGAAGAG AAGCAAGTTG TTGAAGATTA AATGAAGAAT GTGGAGAAAT 481 TTATTTTGGT CAGAAATACA GGCCAAGGGG GAGGAGATTT GTTGGATTTT ATTTACCATA 541 ATTTCTTAAC ATAAATAGGT TTTCCTTTTA GGGAAAAATT TTGGATTGAC TAATC Predicted gene structure (within gDNA segment 80090 to 73832): Exon 1 78642 78421 ( 222 n); cDNA 1 223 ( 223 n); score: 0.874 Intron 1 78420 74929 (3492 n); Pd: 0.511 (s: 0.88), Pa: 0.956 (s: 0) Exon 2 74928 74902 ( 27 n); cDNA 224 249 ( 26 n); score: 0.556 MATCH C08HBa0197J17.1- SGN-E271645- 0.874 249 0.418 C PGS_C08HBa0197J17.1-_SGN-E271645- (78642 78421,74928 74902) Alignment (genomic DNA sequence = upper lines): CATGTATTCT GAGTGAATTG TTTGAGGTTG TTTTCCTCTG TATTTTGTAC TCTCATATTT 78583 ||| ||||| || ||||||| |||| |||| ||| ||||| ||| |||||| |||||||||| CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 60 ATAGTGAATT GTTCATCT-C TTTGTGGACG TACGTCGATT GACCGAACCA CATTAAAT-T 78525 |||||| ||| | |||||| | |||||| ||| || ||||||| |||||||||| | |||||| | ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 120 TTTGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGCCTTTCG AGATTCGCTT 78465 || ||||||| |||||||||| |||||||||| |||||||||| ||| |||||| | || |||| TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AAGTTTGCTT 180 TGCTAGCTTC CGCGTTTACA TCTACTTATT TTCGGTCCTA ACAAGTGATA TTAGAATTAG 78405 |||||||||| ||| |||||| || |||| | |||| ||||| |||| TGCTAGCTTC CGCATTTACA CCTGCTTA-T TTCGATCCTA ACAA...... .......... 223 ATTCAACACT TCTCTCGATC GATCTCTATT TTTTTCTCCT TTATTCGTTG GCTTTTTTGA 78345 .......... .......... .......... .......... .......... .......... 223 TTATTGGTAA ATTAAGTGTT GGACTAAAAT AATTATTAAA TGTTTTGAAT ATGGTGTGCT 78285 .......... .......... .......... .......... .......... .......... 223 ATCGTTCTCT TTGAATCAAA TTTATCCGTT TTTTATAATA TTTCAAACCA TTAAGAGTAC 78225 .......... .......... .......... .......... .......... .......... 223 TCTATTATTT TATGAGTAAT TTTTTTTCTT CTCTACTTTC TACACAAGAC TTTGTTCACA 78165 .......... .......... .......... .......... .......... .......... 223 CATACTCAAT AATCTCCAAG ACTCGTGGAT CATGTGCAAA GGCATTAAGC TGAGTCCTAC 78105 .......... .......... .......... .......... .......... .......... 223 ACCATCAATC CCCCATTTGC ATATTTGTTA GTCGAATTAT TGACTTTGAT ATCAATTGTT 78045 .......... .......... .......... .......... .......... .......... 223 GAGCTAATAC AATCAAAGAT ACTCTTAAAG GCAAAATTAC ACATTTAGCA GATCAGCAAA 77985 .......... .......... .......... .......... .......... .......... 223 ATTAATCACC TCATTTATTT TCATTAAGAT TAAGACGATT AAAGTTGAAT GTATGCCTAA 77925 .......... .......... .......... .......... .......... .......... 223 AAGATTAAGA TGTTGGCTCT AGATCTAAAC ACTGAATGAT TAAAATTATT TTTTAACATC 77865 .......... .......... .......... .......... .......... .......... 223 TGAACATATA TAATTCGTCA TTGTATAAGC ATAATAAACA TATAATTCAT TACCCACTTG 77805 .......... .......... .......... .......... .......... .......... 223 AAAGAGACAA AACAGACTCT GATAATAGAG AGATGGGGGA GCGAGGGCCA AGCATATATA 77745 .......... .......... .......... .......... .......... .......... 223 GAAAGAAAAA AGTGATGATG TTTAAGCTTA CGAAGAAATA TATTAGCATT ATAAAAAGTG 77685 .......... .......... .......... .......... .......... .......... 223 TCTACATAGA AATAAGACAC TCATTATCTG ACTAAACAAA GTACAAATTA GAGTTATATG 77625 .......... .......... .......... .......... .......... .......... 223 GTGATTAATC AAGTATAATT CTGTATATAT TCTTTATACT ATAATTTACT AATTTACTGA 77565 .......... .......... .......... .......... .......... .......... 223 TCAAGTTTGA TCATATGAAG TCTAGGACAC TTAACGTGTT GAATAATTAT GTTAATATAA 77505 .......... .......... .......... .......... .......... .......... 223 GATCTGACAA TCGACCAAGT TTTCCAAATT ACTCTATTTT ATGTATCCAA TCATCACGAT 77445 .......... .......... .......... .......... .......... .......... 223 TGAGTCGGAT AATATATAAA ACAACAAAAT TAATTTTCTA CTCCTGTCAT TACCAATAAC 77385 .......... .......... .......... .......... .......... .......... 223 ATTTAATATA TTATAGTGTG AAAATGCTTC ATATATGAAC ACTACATATA TTTAAAGATT 77325 .......... .......... .......... .......... .......... .......... 223 GCAAAATTTT GCATTAGATT GGTTTTGACT TTTGACTTAG TATAATGTAA GACAAGATTG 77265 .......... .......... .......... .......... .......... .......... 223 GGAGGAAAAT AACCATAACA CAATGACCAC ATATTACCCA CAATACCCAA TTCTAATAAA 77205 .......... .......... .......... .......... .......... .......... 223 ATTCTACAGT GATCATATAT CTTATGTTGA TAACAAGACC TTATTATAGT CTCATATTGA 77145 .......... .......... .......... .......... .......... .......... 223 TGGCAGATTA GGGGTTTGAA TAATTTATCT TAAAGTTTTT CTCAACTTTA TTTAATTTGT 77085 .......... .......... .......... .......... .......... .......... 223 GAGGTGATTT ATTTGGGTCA AGATCGATAT TTTCAGGGTC ACATCTTGTC TTAATTCAAA 77025 .......... .......... .......... .......... .......... .......... 223 GGAGATTGAT TGAGATGGAG AGTTCTGACC ATCAAGAATT CACGCAATGA TTTTTATAAT 76965 .......... .......... .......... .......... .......... .......... 223 ATCTCAAAAG AACAATAAGT GAACACTAAT TAAATTCTAT CTCCAAAGTA ATTATTTTAT 76905 .......... .......... .......... .......... .......... .......... 223 CTAATTAAAC ATACAAATTA CACTTAATAC CTATTTGTAT TTATACTCAA CGAATTAAAG 76845 .......... .......... .......... .......... .......... .......... 223 ATTTCAAAAC TAGCACCCAA CTAGTCAAAA GTCAAACCAC GAGAACTATG TGAGCAAATT 76785 .......... .......... .......... .......... .......... .......... 223 TTTATTTGTA TGGAATACCA TTTTCAAGAT TACCCATGGG ATCCACAGGC AACTTTTTTG 76725 .......... .......... .......... .......... .......... .......... 223 CTTCCATAAT TGTGGATCAA AATGCATAGA GCTTGATGCA CAATTGCACA TGTTCATAGT 76665 .......... .......... .......... .......... .......... .......... 223 TCTATTATTT CCGAATTATG GTCTCTTTAA ACGGAATTCC TTTTCGAGAC AACATAACCT 76605 .......... .......... .......... .......... .......... .......... 223 AATAAATGGA ATTTTTTATC AAACTAAATC ATTATATAAA GTAATTTATC AAAATAATAT 76545 .......... .......... .......... .......... .......... .......... 223 ATTTTAAATT TTTTACAAAA TTAGTATAAA CGTTTTTTAC AGTAACGTTT TATGATATAT 76485 .......... .......... .......... .......... .......... .......... 223 TTCATTTTTT AAAAACTGAT GGATTAGGTT GATATACGTT ACTGTGAGTA ACGTTTACTC 76425 .......... .......... .......... .......... .......... .......... 223 CTAAAACATT ACTGTAACGT TTTAGATATA AAACATTACT TTCAATAATG TTTAACGTTT 76365 .......... .......... .......... .......... .......... .......... 223 TAGTAGTAAA ACGCTACTAT GAGTAACGTA TATCAACCTA ACGCCGTCAG CTTTTAAAAA 76305 .......... .......... .......... .......... .......... .......... 223 ATGAAATATA CCCTAAAACG TTACTGTGAA ATACGTTTAT ATTAGTTTTG TAAAATTTTT 76245 .......... .......... .......... .......... .......... .......... 223 AAAAACGTAT TATTTTAATA AATTATTTTA TATAATGACT TAATTTGATG AAAACCTCCT 76185 .......... .......... .......... .......... .......... .......... 223 AATAAATGGG ATAAAATTTA CAAATACTCA CTTTTTTTAG CTTTCATATT GTAATTGCAA 76125 .......... .......... .......... .......... .......... .......... 223 AATAGACATG ATTATGAAAT TTTAGTTTCG ATAAGTGAAA CTCCAATATA ATCACGGAGT 76065 .......... .......... .......... .......... .......... .......... 223 GTCACTTGTG GAAGTAAAAA TTACTTCAGG ATAACAACTA TTTTTCAAAG ATAAGACAAA 76005 .......... .......... .......... .......... .......... .......... 223 AAGTGAGCAA TTGACGCTAT TTTGACAATC TAATAGTACT GATTATGTAA CCTCTTCAGA 75945 .......... .......... .......... .......... .......... .......... 223 TCGTGGACGC AAAATCTTCA AATCTCTTAT TTTGTTCAAT TTGCTTTTGC TTAGATTGGA 75885 .......... .......... .......... .......... .......... .......... 223 ACCTGATCTT AGCTATGCTC TAGCTAAGTA AATTTTTCCT TTTTTGGTCA ACGTAGGTAC 75825 .......... .......... .......... .......... .......... .......... 223 AGAGATTCAG CAATCAATTT GACTGCTTTT TAACACCTGA GAGTAGTTGC ATCATGCATG 75765 .......... .......... .......... .......... .......... .......... 223 ATTTCAGTAG TAATGTAGTT GAATAATTAG ATAAGTATAT TTTAAGTTTT GTATACTAGT 75705 .......... .......... .......... .......... .......... .......... 223 AGCGTAAACA CTTTTCACAC CGTTCTGTTA AATGCAACTA CAATAATAGG TAACGCCTTA 75645 .......... .......... .......... .......... .......... .......... 223 TAATATGCAT GATGTAGTAA TCTGAAAAAT TAGATTTATA TAACAATCTG ATATAATCGA 75585 .......... .......... .......... .......... .......... .......... 223 GTCAATTAAA TTGAAGATAT AACCTTTTTC TATAAAGCCA TGCGATATAG CTTAAATCTG 75525 .......... .......... .......... .......... .......... .......... 223 ATTATTATTA TTAAACATAT TCACACAAAG CTTACACACT GAGTACTTTC ATCCTTTACT 75465 .......... .......... .......... .......... .......... .......... 223 AGAAAGTTTT AGATTTGAGC TCTATGTGAA TGGAGTAACT GTTTTTGGTA AGGAATGGTT 75405 .......... .......... .......... .......... .......... .......... 223 TATCCAATTA ATATATCGGC CCCGGATACT AAACATTTGA TGAAAAGCTA AAAAAATAAT 75345 .......... .......... .......... .......... .......... .......... 223 GTTTATGACA ACTCAATGCA CAAAATATTC TGTATTCATG TATGATCAAG GAAGACGTTG 75285 .......... .......... .......... .......... .......... .......... 223 CATCTTAAGG ATACAAAATT TTAAATTTTG AATTCGACCA TGCATGAGCA GGTGAAAGCA 75225 .......... .......... .......... .......... .......... .......... 223 GCTAGGACTC ATAAATTGTG AAGTTGAATT AGGAAGAGGG GAACTAGTTT AAAGGCAGTT 75165 .......... .......... .......... .......... .......... .......... 223 GACCAGGATT ATTGTCCTGA GTTTCATTCA AAAAAATACT TTCCCCATGC GCACGGCACA 75105 .......... .......... .......... .......... .......... .......... 223 GACAAATGGT ACAACTTTTT CCTCAATCAT CTCCTTCTCC TGCTAATATA ATTTTATTAT 75045 .......... .......... .......... .......... .......... .......... 223 TTTCTTCCAT ATACTCTCTA TATATTTACA TAAATTGCAA GTAAAGATAT GCATTATATA 74985 .......... .......... .......... .......... .......... .......... 223 GTATATAGAA TATACATACA TACTTTATAC TTATTAATAG TGTGAGCATA TTACAGGTGG 74925 |||| .......... .......... .......... .......... .......... ......GTGG 227 TAGTTGAGTG CTTCCAAATT CCA 74902 || || | | ||| || GTATT-AGAG CCATTTAATG ACA 249 hqPGS_C08HBa0197J17.1-_SGN-E271645- (78642 78421) ******************************************************************************** EST sequence 120 +strand 785 n (File: SGN-E544264+) 1 AAAAATATGG GGAGCAAGAC AATTTTGAAT GGTTTTGTGG TTTTGGTGTT TGTTGGATGG 61 CTTTTCATAT GGGTAATGTT ACCTACACCT ACTTACAAAA ATTCATGGAC TCCACATCTA 121 CTAATCAAAC TCAACTCTAC ATATTTCAGG GAACAAGGGA TAAATCTTCT TTTATTTACA 181 TTTCCCATAA TGTTGATAGC TGCTGTGAGC TGTGTTTATC TTCATCTTTA CAACAAGTCA 241 ACTTCTAATC ACAGGTTAAT CAATTACATG TTGAGTTTTA TTTGCAACCA CGTTAAATCT 301 TTGTGTCTTT GGGTATATTT CTCGTTGTCT TCTTACTCGT AGTCTTTTGA GGTTTGCTTT 361 GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGATCCTAA CATTACATAC TAATTATTAA 421 TGATCTATCT TTGATATATC TCTTTTAACT AACATACAAT TATATTGTTA GGAGTAGTAA 481 TAAAGTGCGG GAATATTTTA GACGGCCACG GCTTGTAATT GAATCTCTTG GAATTGTAAA 541 CGCGGTTGAA CTTATTTTCG CTGCGATGTT TACCGTTCTT CTTATTTGGT CTTTAGCCAA 601 CTACATCTAC ATCAGCTATG GTAATCTTCA TATGCATAAT CCCGCCGAAA AAGTTTGGAT 661 GGCGAAGTTT AGAAGTGTTG CATTGAGGCT TGGGTACATT GGGAATGTTT GTTATGCGTT 721 TTTGTTTTCC CAGTGACTCG ATTATCGTCA ATTTTGCCGC TGGTGGGGCT AACTTCTGAA 781 TCAAG Predicted gene structure (within gDNA segment 82222 to 73775): Exon 1 78538 78421 ( 118 n); cDNA 286 403 ( 118 n); score: 0.898 Intron 1 78420 78088 ( 333 n); Pd: 0.511 (s: 0.90), Pa: 0.000 (s: 0.58) Exon 2 78087 78015 ( 73 n); cDNA 404 473 ( 70 n); score: 0.582 Intron 2 78014 74929 (3086 n); Pd: 0.686 (s: 0.60), Pa: 0.956 (s: 0) Exon 3 74928 74905 ( 24 n); cDNA 474 497 ( 24 n); score: 0.625 MATCH C08HBa0197J17.1- SGN-E544264+ 0.777 215 0.274 C PGS_C08HBa0197J17.1-_SGN-E544264+ (78538 78421,78087 78015,74928 74905) Alignment (genomic DNA sequence = upper lines): AACCACATTA AATTTTTGTG TCTTTTGGTA TATTTCTCGT TGTCTTCTTA CTCGTGGCCT 78479 |||||| ||| ||| |||||| ||||| |||| |||||||||| |||||||||| ||||| | || AACCACGTTA AATCTTTGTG TCTTTGGGTA TATTTCTCGT TGTCTTCTTA CTCGTAGTCT 345 TTCGAGATTC GCTTTGCTAG CTTCCGCGTT TACATCTACT TATTTTCGGT CCTAACAAGT 78419 || ||| || |||||||||| |||||||||| |||| || || |||||||| | ||||||| TTTGAGGTTT GCTTTGCTAG CTTCCGCGTT TACACCTGCT TATTTTCGAT CCTAACAT.. 403 GATATTAGAA TTAGATTCAA CACTTCTCTC GATCGATCTC TATTTTTTTC TCCTTTATTC 78359 .......... .......... .......... .......... .......... .......... 403 GTTGGCTTTT TTGATTATTG GTAAATTAAG TGTTGGACTA AAATAATTAT TAAATGTTTT 78299 .......... .......... .......... .......... .......... .......... 403 GAATATGGTG TGCTATCGTT CTCTTTGAAT CAAATTTATC CGTTTTTTAT AATATTTCAA 78239 .......... .......... .......... .......... .......... .......... 403 ACCATTAAGA GTACTCTATT ATTTTATGAG TAATTTTTTT TCTTCTCTAC TTTCTACACA 78179 .......... .......... .......... .......... .......... .......... 403 AGACTTTGTT CACACATACT CAATAATCTC CAAGACTCGT GGATCATGTG CAAAGGCATT 78119 .......... .......... .......... .......... .......... .......... 403 AAGCTGAGTC CTACACCATC AATCCCCCAT TTGCATATTT GTTAGTCGAA TTAT-TGACT 78060 | |||| | ||| | || | || | || .......... .......... .......... .TACATACTA ATTA-T-TAA TGATCTATCT 430 TTGATATCAA TTGTTGAGCT AATACAATCA AAGATACTCT TAAAGGCAAA ATTACACATT 78000 ||||||| | || | || | ||| || | ||| | | || TTGATATATC TCTTTTAACT -A-ACATACA ATTATATTGT TAGGA..... .......... 473 TAGCAGATCA GCAAAATTAA TCACCTCATT TATTTTCATT AAGATTAAGA CGATTAAAGT 77940 .......... .......... .......... .......... .......... .......... 473 TGAATGTATG CCTAAAAGAT TAAGATGTTG GCTCTAGATC TAAACACTGA ATGATTAAAA 77880 .......... .......... .......... .......... .......... .......... 473 TTATTTTTTA ACATCTGAAC ATATATAATT CGTCATTGTA TAAGCATAAT AAACATATAA 77820 .......... .......... .......... .......... .......... .......... 473 TTCATTACCC ACTTGAAAGA GACAAAACAG ACTCTGATAA TAGAGAGATG GGGGAGCGAG 77760 .......... .......... .......... .......... .......... .......... 473 GGCCAAGCAT ATATAGAAAG AAAAAAGTGA TGATGTTTAA GCTTACGAAG AAATATATTA 77700 .......... .......... .......... .......... .......... .......... 473 GCATTATAAA AAGTGTCTAC ATAGAAATAA GACACTCATT ATCTGACTAA ACAAAGTACA 77640 .......... .......... .......... .......... .......... .......... 473 AATTAGAGTT ATATGGTGAT TAATCAAGTA TAATTCTGTA TATATTCTTT ATACTATAAT 77580 .......... .......... .......... .......... .......... .......... 473 TTACTAATTT ACTGATCAAG TTTGATCATA TGAAGTCTAG GACACTTAAC GTGTTGAATA 77520 .......... .......... .......... .......... .......... .......... 473 ATTATGTTAA TATAAGATCT GACAATCGAC CAAGTTTTCC AAATTACTCT ATTTTATGTA 77460 .......... .......... .......... .......... .......... .......... 473 TCCAATCATC ACGATTGAGT CGGATAATAT ATAAAACAAC AAAATTAATT TTCTACTCCT 77400 .......... .......... .......... .......... .......... .......... 473 GTCATTACCA ATAACATTTA ATATATTATA GTGTGAAAAT GCTTCATATA TGAACACTAC 77340 .......... .......... .......... .......... .......... .......... 473 ATATATTTAA AGATTGCAAA ATTTTGCATT AGATTGGTTT TGACTTTTGA CTTAGTATAA 77280 .......... .......... .......... .......... .......... .......... 473 TGTAAGACAA GATTGGGAGG AAAATAACCA TAACACAATG ACCACATATT ACCCACAATA 77220 .......... .......... .......... .......... .......... .......... 473 CCCAATTCTA ATAAAATTCT ACAGTGATCA TATATCTTAT GTTGATAACA AGACCTTATT 77160 .......... .......... .......... .......... .......... .......... 473 ATAGTCTCAT ATTGATGGCA GATTAGGGGT TTGAATAATT TATCTTAAAG TTTTTCTCAA 77100 .......... .......... .......... .......... .......... .......... 473 CTTTATTTAA TTTGTGAGGT GATTTATTTG GGTCAAGATC GATATTTTCA GGGTCACATC 77040 .......... .......... .......... .......... .......... .......... 473 TTGTCTTAAT TCAAAGGAGA TTGATTGAGA TGGAGAGTTC TGACCATCAA GAATTCACGC 76980 .......... .......... .......... .......... .......... .......... 473 AATGATTTTT ATAATATCTC AAAAGAACAA TAAGTGAACA CTAATTAAAT TCTATCTCCA 76920 .......... .......... .......... .......... .......... .......... 473 AAGTAATTAT TTTATCTAAT TAAACATACA AATTACACTT AATACCTATT TGTATTTATA 76860 .......... .......... .......... .......... .......... .......... 473 CTCAACGAAT TAAAGATTTC AAAACTAGCA CCCAACTAGT CAAAAGTCAA ACCACGAGAA 76800 .......... .......... .......... .......... .......... .......... 473 CTATGTGAGC AAATTTTTAT TTGTATGGAA TACCATTTTC AAGATTACCC ATGGGATCCA 76740 .......... .......... .......... .......... .......... .......... 473 CAGGCAACTT TTTTGCTTCC ATAATTGTGG ATCAAAATGC ATAGAGCTTG ATGCACAATT 76680 .......... .......... .......... .......... .......... .......... 473 GCACATGTTC ATAGTTCTAT TATTTCCGAA TTATGGTCTC TTTAAACGGA ATTCCTTTTC 76620 .......... .......... .......... .......... .......... .......... 473 GAGACAACAT AACCTAATAA ATGGAATTTT TTATCAAACT AAATCATTAT ATAAAGTAAT 76560 .......... .......... .......... .......... .......... .......... 473 TTATCAAAAT AATATATTTT AAATTTTTTA CAAAATTAGT ATAAACGTTT TTTACAGTAA 76500 .......... .......... .......... .......... .......... .......... 473 CGTTTTATGA TATATTTCAT TTTTTAAAAA CTGATGGATT AGGTTGATAT ACGTTACTGT 76440 .......... .......... .......... .......... .......... .......... 473 GAGTAACGTT TACTCCTAAA ACATTACTGT AACGTTTTAG ATATAAAACA TTACTTTCAA 76380 .......... .......... .......... .......... .......... .......... 473 TAATGTTTAA CGTTTTAGTA GTAAAACGCT ACTATGAGTA ACGTATATCA ACCTAACGCC 76320 .......... .......... .......... .......... .......... .......... 473 GTCAGCTTTT AAAAAATGAA ATATACCCTA AAACGTTACT GTGAAATACG TTTATATTAG 76260 .......... .......... .......... .......... .......... .......... 473 TTTTGTAAAA TTTTTAAAAA CGTATTATTT TAATAAATTA TTTTATATAA TGACTTAATT 76200 .......... .......... .......... .......... .......... .......... 473 TGATGAAAAC CTCCTAATAA ATGGGATAAA ATTTACAAAT ACTCACTTTT TTTAGCTTTC 76140 .......... .......... .......... .......... .......... .......... 473 ATATTGTAAT TGCAAAATAG ACATGATTAT GAAATTTTAG TTTCGATAAG TGAAACTCCA 76080 .......... .......... .......... .......... .......... .......... 473 ATATAATCAC GGAGTGTCAC TTGTGGAAGT AAAAATTACT TCAGGATAAC AACTATTTTT 76020 .......... .......... .......... .......... .......... .......... 473 CAAAGATAAG ACAAAAAGTG AGCAATTGAC GCTATTTTGA CAATCTAATA GTACTGATTA 75960 .......... .......... .......... .......... .......... .......... 473 TGTAACCTCT TCAGATCGTG GACGCAAAAT CTTCAAATCT CTTATTTTGT TCAATTTGCT 75900 .......... .......... .......... .......... .......... .......... 473 TTTGCTTAGA TTGGAACCTG ATCTTAGCTA TGCTCTAGCT AAGTAAATTT TTCCTTTTTT 75840 .......... .......... .......... .......... .......... .......... 473 GGTCAACGTA GGTACAGAGA TTCAGCAATC AATTTGACTG CTTTTTAACA CCTGAGAGTA 75780 .......... .......... .......... .......... .......... .......... 473 GTTGCATCAT GCATGATTTC AGTAGTAATG TAGTTGAATA ATTAGATAAG TATATTTTAA 75720 .......... .......... .......... .......... .......... .......... 473 GTTTTGTATA CTAGTAGCGT AAACACTTTT CACACCGTTC TGTTAAATGC AACTACAATA 75660 .......... .......... .......... .......... .......... .......... 473 ATAGGTAACG CCTTATAATA TGCATGATGT AGTAATCTGA AAAATTAGAT TTATATAACA 75600 .......... .......... .......... .......... .......... .......... 473 ATCTGATATA ATCGAGTCAA TTAAATTGAA GATATAACCT TTTTCTATAA AGCCATGCGA 75540 .......... .......... .......... .......... .......... .......... 473 TATAGCTTAA ATCTGATTAT TATTATTAAA CATATTCACA CAAAGCTTAC ACACTGAGTA 75480 .......... .......... .......... .......... .......... .......... 473 CTTTCATCCT TTACTAGAAA GTTTTAGATT TGAGCTCTAT GTGAATGGAG TAACTGTTTT 75420 .......... .......... .......... .......... .......... .......... 473 TGGTAAGGAA TGGTTTATCC AATTAATATA TCGGCCCCGG ATACTAAACA TTTGATGAAA 75360 .......... .......... .......... .......... .......... .......... 473 AGCTAAAAAA ATAATGTTTA TGACAACTCA ATGCACAAAA TATTCTGTAT TCATGTATGA 75300 .......... .......... .......... .......... .......... .......... 473 TCAAGGAAGA CGTTGCATCT TAAGGATACA AAATTTTAAA TTTTGAATTC GACCATGCAT 75240 .......... .......... .......... .......... .......... .......... 473 GAGCAGGTGA AAGCAGCTAG GACTCATAAA TTGTGAAGTT GAATTAGGAA GAGGGGAACT 75180 .......... .......... .......... .......... .......... .......... 473 AGTTTAAAGG CAGTTGACCA GGATTATTGT CCTGAGTTTC ATTCAAAAAA ATACTTTCCC 75120 .......... .......... .......... .......... .......... .......... 473 CATGCGCACG GCACAGACAA ATGGTACAAC TTTTTCCTCA ATCATCTCCT TCTCCTGCTA 75060 .......... .......... .......... .......... .......... .......... 473 ATATAATTTT ATTATTTTCT TCCATATACT CTCTATATAT TTACATAAAT TGCAAGTAAA 75000 .......... .......... .......... .......... .......... .......... 473 GATATGCATT ATATAGTATA TAGAATATAC ATACATACTT TATACTTATT AATAGTGTGA 74940 .......... .......... .......... .......... .......... .......... 473 GCATATTACA GGTGGTAGTT GAGTGCTTCC AAATT 74905 || ||| | ||||| | ||| .......... .GTAGTAATA AAGTGCGGGA ATATT 497 hqPGS_C08HBa0197J17.1-_SGN-E544264+ (78538 78421) ******************************************************************************** EST sequence 32 -strand 574 n (File: SGN-E206285-) 1 AAACATATAG GGCCAAGCAA GTTCACGTAT CATAGATGTT TGTTGGGTTT TATTTGCTCT 61 AAATTTCTTA CCATAAATAG ATTTTCCTTG TAGGAAAAGG TTTTGGATTG ACTAATCCTT 121 TTCTTGTAGG GAAAGGTTTA GGATTCTATA AATAGAGGCA TGTTCCTTTT AACTTAGTTA 181 ACATTCACAA TGTAGTCTTA AGGGCTTTGA GAGTTTTGGT TAGAGGGAGA ATTTGTGGGT 241 CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT GAATTGGTTG 301 AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC ATCTCCTTTG 361 TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT ATATTTCTCG 421 TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT TTACACCTGC 481 TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA AGCCCTTGCT 541 TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 81139 to 76855): Exon 1 78824 78422 ( 403 n); cDNA 96 499 ( 404 n); score: 0.878 MATCH C08HBa0197J17.1- SGN-E206285- 0.878 403 0.702 C PGS_C08HBa0197J17.1-_SGN-E206285- (78824 78422) Alignment (genomic DNA sequence = upper lines): AAATGTTCCT TCTAAATTAA TCCTTTTTCT AGTAGGAAAA GATTTAGAAC TCTATAAATA 78765 ||| ||| | | ||| |||| ||||| ||||| ||| | ||||| | |||||||||| AAAGGTTTTG GATTGACTAA TCCT-TTTCT TGTAGGGAAA GGTTTAGGAT TCTATAAATA 154 GAGAAATGTT CCTTCTAACT TAATCAACAT TCACAATGTA GTCTTAAGGG CTTTGAGAGT 78705 ||| ||||| |||| ||||| || | ||||| |||||||||| |||||||||| |||||||||| GAGGCATGTT CCTTTTAACT TAGTTAACAT TCACAATGTA GTCTTAAGGG CTTTGAGAGT 214 TTTGATTAAG GGGAGAATTT GTGGGTCACA AGCTTGATAC GTTATCACTT GCGTGAACCT 78645 |||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| | |||||||| TTTGGTTAGA GGGAGAATTT GTGGGTCACA AGCTTGATAC GTTATTACTT GTGTGAACCT 274 CCCATGTATT CTGAGTGAAT TGTTTGAGGT TGTTTTCCTC TGTATTTTGT ACTCTCATAT 78585 |||||||||| |||||||||| || ||||| | ||||| |||| |||||||||| |||||||||| CCCATGTATT CTGAGTGAAT TGGTTGAGAT TGTTTCCCTC TGTATTTTGT ACTCTCATAT 334 TTATAGTGAA TTGTTCATCT -CTTTGTGGA CGTACGTCGA TTGACCGAAC CACATTAAAT 78526 |||||||| | ||| |||||| ||||||||| | || ||||| |||||||||| ||| |||||| TTATAGTGGA TTGCTCATCT CCTTTGTGGA CATAGGTCGA TTGACCGAAC CACGTTAAAT 394 TTTTGTGTCT TTTGGTATAT TTCTCGTTGT CTTCTTACTC GTGGCCTTTC GAGATTCGCT 78466 ||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| || || || CTTTGTGTCT TTTGGTATAT TTCTCGTTGT CTTCTTACTC GTGGTCTTTC GATGTTAGCA 454 TTGCTAGCTT CCGCGTTTAC ATCTACTTA- TTTTCGGTCC TAACA 78422 |||||||||| |||||||||| | || |||| |||||||||| || TTGCTAGCTT CCGCGTTTAC ACCTGCTTAT TTTTCGGTCC ATGCA 499 hqPGS_C08HBa0197J17.1-_SGN-E206285- (78824 78422) ******************************************************************************** EST sequence 76 +strand 747 n (File: SGN-E211090+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC TGCTTATTTT CGGTCCTAAC ATATCTGAGT TTGCAGTTCT GTCCCTCCAC 541 CCCCTTCTTT TTGCAGGCAC AAATGGAATC AGTAAACTTA GCAGCAAATT CTTATTATGT 601 ACCAGAATCT GATTTTACGA GTTATTTGAA CTTTGGTGCT GCTGTCAGTG AGGTGGAGAT 661 TGATATCCTG ACCGGAGAGA CTACCATTTT GCAATCTGAT ATTATTTACG ACTGTGGGCA 721 GAGCTTGAAT CCAGCCGTTG ATATGGG Predicted gene structure (within gDNA segment 81877 to 75245): Exon 1 81177 81172 ( 6 n); cDNA 119 124 ( 6 n); score: 0.833 Intron 1 81171 78809 (2363 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 2 78808 78422 ( 387 n); cDNA 125 511 ( 387 n); score: 0.901 MATCH C08HBa0197J17.1- SGN-E211090+ 0.901 393 0.526 C PGS_C08HBa0197J17.1-_SGN-E211090+ (81177 81172,78808 78422) Alignment (genomic DNA sequence = upper lines): AATTCAATAT ACTTCATTTA ATTCTACTCG AAATGATCAC TTAGGGTGCA ACAGCAGCTA 81118 |||| | AATTGA.... .......... .......... .......... .......... .......... 124 AAAAAAAGGT TTCCTCGTTT AATTACTATT TACTCACTTC AATAATATTT ATCCACGATG 81058 .......... .......... .......... .......... .......... .......... 124 AACTTCGTAT ATTCTTAAAA AGTTATAAAT AGAAAAATAA TTTACTATAT TATTATTTGA 80998 .......... .......... .......... .......... .......... .......... 124 ATATAATACA TATAATGTCT TAAAATGTAA TAGAAAAATA ACACGAACGA TAAATTAGAA 80938 .......... .......... .......... .......... .......... .......... 124 ATTAAATGTA AAATTATCTG CTCATTTCAT AAAGTAGACA AATATTATTA GACATCTCAA 80878 .......... .......... .......... .......... .......... .......... 124 AATAATACGC TCTCAATTCA CTTTTACTTG TCATTTATTC CTTAAATAAG TTTACAATTT 80818 .......... .......... .......... .......... .......... .......... 124 TTACTTGTTA CGTTTGATAT ATTAAGAAAA AGAACAATGA GTAATTTTTT TTCATGTTTT 80758 .......... .......... .......... .......... .......... .......... 124 ACCTTCATCA TTATATACTT ATTATCAAAA TCATTTCAAG AAATCATTCA ATAGGGAATA 80698 .......... .......... .......... .......... .......... .......... 124 TTGATAAAAC ACTTTCATAA TTACTTTTTT TTTTTAATAA TATATCAAAT CAAATCAGGA 80638 .......... .......... .......... .......... .......... .......... 124 TAAGTAAAAC AAATAAAAAA GTTACACAAA ATAATTATCG TATGACGAAA AGAGTAATAA 80578 .......... .......... .......... .......... .......... .......... 124 ACAAGACAAA TTATATACTC ATGTAGTGTA AAAGTTAGTA TTTCTTTACG ATAGTGCAAC 80518 .......... .......... .......... .......... .......... .......... 124 GCATGTGAGA TGTCCTCGGT TTCGTAAATT AATAATAAGC TATTTTAAAG TTCATATGGG 80458 .......... .......... .......... .......... .......... .......... 124 GAGAAAATGA AGTCATAAAC ACCAGTTTAC AAATATTCTT AAAAAATATC ATAACTATAT 80398 .......... .......... .......... .......... .......... .......... 124 GATTCTCTCT TTTTAATCCT ATTATAAATC CTCAATTGTC ACAATTATGA GTAGAAAAAA 80338 .......... .......... .......... .......... .......... .......... 124 TTTAACAAAC ATAGTAACAA AAAAGAATTA AATAGCGCGT AATAATACTT ATACCAAACT 80278 .......... .......... .......... .......... .......... .......... 124 AAATCAGGGA TGAATTCAAG AGTAAAATAT ACAAATTTAC ATTCCGAATC CTATTATTGT 80218 .......... .......... .......... .......... .......... .......... 124 CATTATTACT GAGTCTGATA TTAATTATTT TTTATTTATT TAAGATTTTT TTGACTCGTA 80158 .......... .......... .......... .......... .......... .......... 124 TATGAAGTTA AGAACCAAAA TTATAAAATT TAAATAAATT CATTAATTAT ACACAAGATG 80098 .......... .......... .......... .......... .......... .......... 124 CTTGCCCTTA CTAATGGTTG TGGATAAGTG AACGTGGCAC TAAAAAGCTC CACAAATGAC 80038 .......... .......... .......... .......... .......... .......... 124 TATATATAAT ACTCCCTCCA TTAAAAAAGA ATGACCTAAT TTGATTTGGA ACGGAGTTTA 79978 .......... .......... .......... .......... .......... .......... 124 AGAAAGAAGA TTTTTTAAAT TGTGATTCTA AATTAAAGTT ATGTCAAACA TACCAAAATG 79918 .......... .......... .......... .......... .......... .......... 124 TTCTTTAACC TTGTGGTCTT AAACACGCCA CGTGGAAAGA AAAGTTAAAA TATTGCCAAA 79858 .......... .......... .......... .......... .......... .......... 124 AATGAAATAG GTCATTCTTT TTAAAACAAA CTAAAAAAAA ATAAAGTTAT TCTTTTTTAA 79798 .......... .......... .......... .......... .......... .......... 124 ACGGAGAAAA TATACGTATA TTATAGTCAA TACTTCTATA TTATTTACCT ATATTGTGTA 79738 .......... .......... .......... .......... .......... .......... 124 TTTGATATCT GACTAAATTT GAATTCTTAA TTTATGTACT TTTTTATATG TATTGAAGTT 79678 .......... .......... .......... .......... .......... .......... 124 TCATTAAATT ATAATTGTCA TATTTCAAAA TTTGTTTTTA GGATAATACC CTGTCATGAT 79618 .......... .......... .......... .......... .......... .......... 124 TTTTCCCTTT TTAAGCTCTT AAACTAAAAA CTTTATTAAG AATGAACAAA TCTCAGTTAT 79558 .......... .......... .......... .......... .......... .......... 124 CTCATTACAA ATCATATTTA TTTCACTTCA TTCATACATC ATCAGTACAT GGTATAGTTG 79498 .......... .......... .......... .......... .......... .......... 124 ATTATAGTAC TCTAATTAAT AGCATAAACT TGCATTAACT TAATTAGTAA GATCAGTTTC 79438 .......... .......... .......... .......... .......... .......... 124 ATTACGTGAT AAATTATATT ACTACTGCAA CTAGCAAATG TTCGTGCATA AGTGAATGTG 79378 .......... .......... .......... .......... .......... .......... 124 GCACTAAAAA ATAAAAATAC CGTTTGGTTA TCGAGGAAAT AATACTGGTA CTAATTTATA 79318 .......... .......... .......... .......... .......... .......... 124 CCCTCTTTTG GTTGACATCA TCATTTCTGG TATATAGAAT TACTAATATT TATGAATTTT 79258 .......... .......... .......... .......... .......... .......... 124 TATATCGTAA TATCGATATA ATTTTTTAAT TTTTACTGTG TAATAATTTA TACAAAGATA 79198 .......... .......... .......... .......... .......... .......... 124 AAACACTTGA GCAAAATAAC TTGGATTTCG ATAGTCTCTG TTTATTACCT TAAAATATAA 79138 .......... .......... .......... .......... .......... .......... 124 GATCACAGTC CATAATTCTC ACACTATAAT TTTCGCGTAA TTTGTCTGCG AACGAAACGT 79078 .......... .......... .......... .......... .......... .......... 124 TTTTTTAATT GTTTTAGTAG ATTTTATTTA TATGCATGTA TGAGGAGAGA AGGAACTTAT 79018 .......... .......... .......... .......... .......... .......... 124 ATTATATTTC TTATCATTAA AACGTGCAGA GCAGAACAAA TTGTCAAACT CTAATATTAG 78958 .......... .......... .......... .......... .......... .......... 124 TGGCAGTAAG GCAATTTATG CCCTAGTACC TATTGAATTA TATGTTATTT TCTAATTTTT 78898 .......... .......... .......... .......... .......... .......... 124 AGTGTACTGA TTCAAATTTC TTCCTTATCT TTTATCTTAT TTTAATGGTA GAATGGAATT 78838 .......... .......... .......... .......... .......... .......... 124 CATATTAATA GAGAAATGTT CCTTCTAAAT TAATCCTTTT TCTAGTAGGA AAAGATTTAG 78778 ||||||| || ||| |||||| |||| ||||| .......... .......... .........C TAATCCT-TT TCTTGTAGGA AAAGGTTTAG 154 AACTCTATAA ATAGAGAAAT GTTCCTTCTA ACTTAATCAA CATTCACAAT GTAGTCTTAA 78718 ||||||||| ||||| ||| |||||| || ||||||||| |||||||||| ||||||||| GACTCTATAA ATAGATGAAT ATTCCTTTTA ACTTAATCAG CATTCACAAT GTAGTCTTAC 214 GGGCTTTGAG AGTTTTGATT AAGGGGAGAA TTTGTGGGTC ACAAGCTTGA TACGTTATCA 78658 ||||||||| ||||||| || | ||||||| | |||||||| |||||||||| || ||||||| AGGCTTTGAG AGTTTTGGTT AGAGGGAGAA TCTGTGGGTC ACAAGCTTGA TATGTTATCA 274 CTTGCGTGAA CCTCCCATGT ATTCTGAGTG AATTGTTTGA GGTTGTTTTC CTCTGTATTT 78598 |||| ||||| |||||||||| |||||||||| ||||| |||| |||||||| |||||||||| CTTGTGTGAA CCTCCCATGT ATTCTGAGTG AATTGGTTGA GGTTGTTTCT CTCTGTATTT 334 TGTACTCTCA TATTTATAGT GAATTGTTCA TCT-CTTTGT GGACGTACGT CGATTGACCG 78539 |||||||| | |||||||||| | |||| ||| ||| |||||| ||||||| || ||||||||| TGTACTCTTA TATTTATAGT GGATTGCTCA TCTCCTTTGT GGACGTAGGT TGATTGACCG 394 AACCACATTA AATTTTTGTG TCTTTTGGTA TATTTCTCGT TGTCTTCTTA CTCGTGGCCT 78479 |||||| ||| ||| |||||| ||||||| || |||||||||| |||||||||| ||||||| || AACCACGTTA AATCTTTGTG TCTTTTGATA TATTTCTCGT TGTCTTCTTA CTCGTGGTCT 454 TTCGAGATTC GCTTTGCTAG CTTCCGCGTT TACATCTACT TATTTTCGGT CCTAACA 78422 |||||| || | ||||||| |||||||||| |||| || || |||||||||| ||||||| TTCGAGGTTT GTATTGCTAG CTTCCGCGTT TACACCTGCT TATTTTCGGT CCTAACA 511 hqPGS_C08HBa0197J17.1-_SGN-E211090+ (78808 78422) ******************************************************************************** EST sequence 33 -strand 344 n (File: SGN-E206496-) 1 ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 61 GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 121 ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 181 ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT 241 TTACACCTGC TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA 301 AGCCATTGCT TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 79298 to 76855): Exon 1 78688 78422 ( 267 n); cDNA 1 269 ( 269 n); score: 0.903 MATCH C08HBa0197J17.1- SGN-E206496- 0.903 267 0.776 C PGS_C08HBa0197J17.1-_SGN-E206496- (78688 78422) Alignment (genomic DNA sequence = upper lines): ATTTGTGGGT CACAAGCTTG ATACGTTATC ACTTGCGTGA ACCTCCCATG TATTCTGAGT 78629 |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 60 GAATTGTTTG AGGTTGTTTT CCTCTGTATT TTGTACTCTC ATATTTATAG TGAATTGTTC 78569 |||||| ||| || |||||| |||||||||| |||||||||| |||||||||| || |||| || GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 120 ATCT-CTTTG TGGACGTACG TCGATTGACC GAACCACATT AAATTTTTGT GTCTTTTGGT 78510 |||| ||||| ||||| || | |||||||||| ||||||| || |||| ||||| |||||||||| ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 180 ATATTTCTCG TTGTCTTCTT ACTCGTGGCC TTTCGAGATT CGCTTTGCTA GCTTCCGCGT 78450 |||||||||| |||||||||| |||||||| | |||||| || || |||||| |||||||||| ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT 240 TTACATCTAC TTA-TTTTCG GTCCTAACA 78422 ||||| || | ||| |||||| |||| || TTACACCTGC TTATTTTTCG GTCCATGCA 269 hqPGS_C08HBa0197J17.1-_SGN-E206496- (78688 78422) ******************************************************************************** EST sequence 45 -strand 349 n (File: SGN-E207598-) 1 TTGTGGGTCA CAAGCTTGAT ACGTTATTAC TTGTGTGACC CTCCCATGTA TTCTGAGTGA 61 ATTGGTTGAG ATTGTTTCCC TCTGTATTTT GTACTCTCAT ATTAATAGTG GATTGCTCAT 121 CTCCTTTGTG GACATAGGTC GATTGACCGA CCCACGTTAA ATCTTTGTGT CTTTTGGTAT 181 ATTTCTCGTT GTCTTCTAAC TCGTGGTCTT TCGATGTTAG CATTGCTAGC TTCCGCGTTT 241 ACACCTGCTT ATTTTTCGGT CCATGCATTA TACGTACGCC ACCTATAGTT GTAAATTAAG 301 CCATTGCTTC TGCAGACAAA ATATACATAG CTCTACTTAG TTTCTTTTC Predicted gene structure (within gDNA segment 79296 to 76371): Exon 1 78686 78422 ( 265 n); cDNA 1 267 ( 267 n); score: 0.887 MATCH C08HBa0197J17.1- SGN-E207598- 0.887 265 0.759 C PGS_C08HBa0197J17.1-_SGN-E207598- (78686 78422) Alignment (genomic DNA sequence = upper lines): TTGTGGGTCA CAAGCTTGAT ACGTTATCAC TTGCGTGAAC CTCCCATGTA TTCTGAGTGA 78627 |||||||||| |||||||||| ||||||| || ||| |||| | |||||||||| |||||||||| TTGTGGGTCA CAAGCTTGAT ACGTTATTAC TTGTGTGACC CTCCCATGTA TTCTGAGTGA 60 ATTGTTTGAG GTTGTTTTCC TCTGTATTTT GTACTCTCAT ATTTATAGTG AATTGTTCAT 78567 |||| ||||| |||||| || |||||||||| |||||||||| ||| |||||| |||| |||| ATTGGTTGAG ATTGTTTCCC TCTGTATTTT GTACTCTCAT ATTAATAGTG GATTGCTCAT 120 CT-CTTTGTG GACGTACGTC GATTGACCGA ACCACATTAA ATTTTTGTGT CTTTTGGTAT 78508 || ||||||| ||| || ||| |||||||||| |||| |||| || ||||||| |||||||||| CTCCTTTGTG GACATAGGTC GATTGACCGA CCCACGTTAA ATCTTTGTGT CTTTTGGTAT 180 ATTTCTCGTT GTCTTCTTAC TCGTGGCCTT TCGAGATTCG CTTTGCTAGC TTCCGCGTTT 78448 |||||||||| ||||||| || |||||| ||| |||| || | | |||||||| |||||||||| ATTTCTCGTT GTCTTCTAAC TCGTGGTCTT TCGATGTTAG CATTGCTAGC TTCCGCGTTT 240 ACATCTACTT A-TTTTCGGT CCTAACA 78422 ||| || ||| | |||||||| || || ACACCTGCTT ATTTTTCGGT CCATGCA 267 hqPGS_C08HBa0197J17.1-_SGN-E207598- (78686 78422) ******************************************************************************** EST sequence 12 -strand 667 n (File: SGN-E389613-) 1 CTCATATTAC TAATAGGTAA TCATTGCAAC TAATTTGGAT GAGTACAAGA ATGTTTCTAA 61 CAAATTATTA TCATGTTCTA TTTTGCTTTT ATTCTGCCTG TTCTATTATA ACTTTTAACT 121 GATCATGAAT GTACATTCCT CCTGTGATTT GCACATACAT AATGCGTTGA GGTATGAGTC 181 ACAAGCTTCT TGATACGTTA TCACTTGTGT GAATCTCTCA TGTATTCTGA GTGAATTTGG 241 TTGAGGTTGT TTCTCTCTGT ATTTTGTATT CTCATATTTA TAATGGATTG CTCATCTCCT 301 TTGTGGACGT AGGTCAATTG ACCGAACCAC GTTAAATCTC TGTATCTTTT GGTATATTTC 361 TCGTTGTCTT CTTACTCGTG GTCTTTTGAG GTTTGCTTTG CTAGCTTCCG CGTTTACACC 421 TGCTTATTTT TGGTCCTAAC ACCGTCAAGG TTCCATTGAC TCATTACTAT CAGGTTATGG 481 ATTTGTGATG GTGGAAGGTA GCAGGTACGC GTTGCATGCA AGCTATCTCA TTTCATATTG 541 TGGGGCAAAA TTAATTAGGT ATATAAGTTA GTGCTGCCAA AGGCAAAAAA GGATCTGTAA 601 CTAAATACTT TTACCAATGG TCCAATGCTA AGGATCTATG GCTGGATTTG GAGATTGCAG 661 TAATGTA Predicted gene structure (within gDNA segment 81162 to 75355): Exon 1 78672 78422 ( 251 n); cDNA 189 441 ( 253 n); score: 0.888 MATCH C08HBa0197J17.1- SGN-E389613- 0.888 251 0.376 C PGS_C08HBa0197J17.1-_SGN-E389613- (78672 78422) Alignment (genomic DNA sequence = upper lines): CTTGATACGT TATCACTTGC GTGAACCTCC CATGTATTCT GAGTGAATT- GTTTGAGGTT 78614 |||||||||| ||||||||| ||||| ||| |||||||||| ||||||||| | |||||||| CTTGATACGT TATCACTTGT GTGAATCTCT CATGTATTCT GAGTGAATTT GGTTGAGGTT 248 GTTTTCCTCT GTATTTTGTA CTCTCATATT TATAGTGAAT TGTTCATCT- CTTTGTGGAC 78555 |||| |||| |||||||||| ||||||||| |||| || || || |||||| |||||||||| GTTTCTCTCT GTATTTTGTA TTCTCATATT TATAATGGAT TGCTCATCTC CTTTGTGGAC 308 GTACGTCGAT TGACCGAACC ACATTAAATT TTTGTGTCTT TTGGTATATT TCTCGTTGTC 78495 ||| ||| || |||||||||| || |||||| | ||| |||| |||||||||| |||||||||| GTAGGTCAAT TGACCGAACC ACGTTAAATC TCTGTATCTT TTGGTATATT TCTCGTTGTC 368 TTCTTACTCG TGGCCTTTCG AGATTCGCTT TGCTAGCTTC CGCGTTTACA TCTACTTATT 78435 |||||||||| ||| |||| | || || |||| |||||||||| |||||||||| || |||||| TTCTTACTCG TGGTCTTTTG AGGTTTGCTT TGCTAGCTTC CGCGTTTACA CCTGCTTATT 428 TTCGGTCCTA ACA 78422 || ||||||| ||| TTTGGTCCTA ACA 441 hqPGS_C08HBa0197J17.1-_SGN-E389613- (78672 78422) ******************************************************************************** EST sequence 1 -strand 302 n (File: SGN-E370622-) 1 CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 61 ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GGTTTGCGTT 181 GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGGTCCTAA CATTATCCAC CGAGTTTAGA 241 AGGTTGTGAT TAGTCCAAAG GGGCGGGTCA TAGGCATATT TCTAGGTTAT CAAAAAAAAA 301 AA Predicted gene structure (within gDNA segment 79567 to 76365): Exon 1 78642 78422 ( 221 n); cDNA 1 222 ( 222 n); score: 0.903 PPA cDNA 292 302 MATCH C08HBa0197J17.1- SGN-E370622- 0.903 221 0.732 C PGS_C08HBa0197J17.1-_SGN-E370622- (78642 78422) Alignment (genomic DNA sequence = upper lines): CATGTATTCT GAGTGAATTG TTTGAGGTTG TTTTCCTCTG TATTTTGTAC TCTCATATTT 78583 ||||||||| |||||||||| ||||||||| ||| ||||| |||||||||| |||||||||| CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 60 ATAGTGAATT GTTCATCT-C TTTGTGGACG TACGTCGATT GACCGAACCA CATTAAATTT 78524 ||||| ||| | |||||| | |||||||||| || ||||||| |||||||||| | |||||| | ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 120 TTGTGTCTTT TGGTATATTT CTCGTTGTCT TCTTACTCGT GGCCTTTCGA GATTCGCTTT 78464 |||||||||| |||||||||| ||||||||| |||||||||| || ||| || | || || || TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GGTTTGCGTT 180 GCTAGCTTCC GCGTTTACAT CTACTTATTT TCGGTCCTAA CA 78422 |||||||||| ||||||||| || ||||||| |||||||||| || GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGGTCCTAA CA 222 hqPGS_C08HBa0197J17.1-_SGN-E370622- (78642 78422) ******************************************************************************** EST sequence 94 +strand 490 n (File: SGN-E205772+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTACTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGA TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC Predicted gene structure (within gDNA segment 82066 to 77815): Exon 1 81177 81172 ( 6 n); cDNA 119 124 ( 6 n); score: 0.833 Intron 1 81171 78809 (2363 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 2 78808 78445 ( 364 n); cDNA 125 488 ( 364 n); score: 0.894 MATCH C08HBa0197J17.1- SGN-E205772+ 0.894 370 0.755 C PGS_C08HBa0197J17.1-_SGN-E205772+ (81177 81172,78808 78445) Alignment (genomic DNA sequence = upper lines): AATTCAATAT ACTTCATTTA ATTCTACTCG AAATGATCAC TTAGGGTGCA ACAGCAGCTA 81118 |||| | AATTGA.... .......... .......... .......... .......... .......... 124 AAAAAAAGGT TTCCTCGTTT AATTACTATT TACTCACTTC AATAATATTT ATCCACGATG 81058 .......... .......... .......... .......... .......... .......... 124 AACTTCGTAT ATTCTTAAAA AGTTATAAAT AGAAAAATAA TTTACTATAT TATTATTTGA 80998 .......... .......... .......... .......... .......... .......... 124 ATATAATACA TATAATGTCT TAAAATGTAA TAGAAAAATA ACACGAACGA TAAATTAGAA 80938 .......... .......... .......... .......... .......... .......... 124 ATTAAATGTA AAATTATCTG CTCATTTCAT AAAGTAGACA AATATTATTA GACATCTCAA 80878 .......... .......... .......... .......... .......... .......... 124 AATAATACGC TCTCAATTCA CTTTTACTTG TCATTTATTC CTTAAATAAG TTTACAATTT 80818 .......... .......... .......... .......... .......... .......... 124 TTACTTGTTA CGTTTGATAT ATTAAGAAAA AGAACAATGA GTAATTTTTT TTCATGTTTT 80758 .......... .......... .......... .......... .......... .......... 124 ACCTTCATCA TTATATACTT ATTATCAAAA TCATTTCAAG AAATCATTCA ATAGGGAATA 80698 .......... .......... .......... .......... .......... .......... 124 TTGATAAAAC ACTTTCATAA TTACTTTTTT TTTTTAATAA TATATCAAAT CAAATCAGGA 80638 .......... .......... .......... .......... .......... .......... 124 TAAGTAAAAC AAATAAAAAA GTTACACAAA ATAATTATCG TATGACGAAA AGAGTAATAA 80578 .......... .......... .......... .......... .......... .......... 124 ACAAGACAAA TTATATACTC ATGTAGTGTA AAAGTTAGTA TTTCTTTACG ATAGTGCAAC 80518 .......... .......... .......... .......... .......... .......... 124 GCATGTGAGA TGTCCTCGGT TTCGTAAATT AATAATAAGC TATTTTAAAG TTCATATGGG 80458 .......... .......... .......... .......... .......... .......... 124 GAGAAAATGA AGTCATAAAC ACCAGTTTAC AAATATTCTT AAAAAATATC ATAACTATAT 80398 .......... .......... .......... .......... .......... .......... 124 GATTCTCTCT TTTTAATCCT ATTATAAATC CTCAATTGTC ACAATTATGA GTAGAAAAAA 80338 .......... .......... .......... .......... .......... .......... 124 TTTAACAAAC ATAGTAACAA AAAAGAATTA AATAGCGCGT AATAATACTT ATACCAAACT 80278 .......... .......... .......... .......... .......... .......... 124 AAATCAGGGA TGAATTCAAG AGTAAAATAT ACAAATTTAC ATTCCGAATC CTATTATTGT 80218 .......... .......... .......... .......... .......... .......... 124 CATTATTACT GAGTCTGATA TTAATTATTT TTTATTTATT TAAGATTTTT TTGACTCGTA 80158 .......... .......... .......... .......... .......... .......... 124 TATGAAGTTA AGAACCAAAA TTATAAAATT TAAATAAATT CATTAATTAT ACACAAGATG 80098 .......... .......... .......... .......... .......... .......... 124 CTTGCCCTTA CTAATGGTTG TGGATAAGTG AACGTGGCAC TAAAAAGCTC CACAAATGAC 80038 .......... .......... .......... .......... .......... .......... 124 TATATATAAT ACTCCCTCCA TTAAAAAAGA ATGACCTAAT TTGATTTGGA ACGGAGTTTA 79978 .......... .......... .......... .......... .......... .......... 124 AGAAAGAAGA TTTTTTAAAT TGTGATTCTA AATTAAAGTT ATGTCAAACA TACCAAAATG 79918 .......... .......... .......... .......... .......... .......... 124 TTCTTTAACC TTGTGGTCTT AAACACGCCA CGTGGAAAGA AAAGTTAAAA TATTGCCAAA 79858 .......... .......... .......... .......... .......... .......... 124 AATGAAATAG GTCATTCTTT TTAAAACAAA CTAAAAAAAA ATAAAGTTAT TCTTTTTTAA 79798 .......... .......... .......... .......... .......... .......... 124 ACGGAGAAAA TATACGTATA TTATAGTCAA TACTTCTATA TTATTTACCT ATATTGTGTA 79738 .......... .......... .......... .......... .......... .......... 124 TTTGATATCT GACTAAATTT GAATTCTTAA TTTATGTACT TTTTTATATG TATTGAAGTT 79678 .......... .......... .......... .......... .......... .......... 124 TCATTAAATT ATAATTGTCA TATTTCAAAA TTTGTTTTTA GGATAATACC CTGTCATGAT 79618 .......... .......... .......... .......... .......... .......... 124 TTTTCCCTTT TTAAGCTCTT AAACTAAAAA CTTTATTAAG AATGAACAAA TCTCAGTTAT 79558 .......... .......... .......... .......... .......... .......... 124 CTCATTACAA ATCATATTTA TTTCACTTCA TTCATACATC ATCAGTACAT GGTATAGTTG 79498 .......... .......... .......... .......... .......... .......... 124 ATTATAGTAC TCTAATTAAT AGCATAAACT TGCATTAACT TAATTAGTAA GATCAGTTTC 79438 .......... .......... .......... .......... .......... .......... 124 ATTACGTGAT AAATTATATT ACTACTGCAA CTAGCAAATG TTCGTGCATA AGTGAATGTG 79378 .......... .......... .......... .......... .......... .......... 124 GCACTAAAAA ATAAAAATAC CGTTTGGTTA TCGAGGAAAT AATACTGGTA CTAATTTATA 79318 .......... .......... .......... .......... .......... .......... 124 CCCTCTTTTG GTTGACATCA TCATTTCTGG TATATAGAAT TACTAATATT TATGAATTTT 79258 .......... .......... .......... .......... .......... .......... 124 TATATCGTAA TATCGATATA ATTTTTTAAT TTTTACTGTG TAATAATTTA TACAAAGATA 79198 .......... .......... .......... .......... .......... .......... 124 AAACACTTGA GCAAAATAAC TTGGATTTCG ATAGTCTCTG TTTATTACCT TAAAATATAA 79138 .......... .......... .......... .......... .......... .......... 124 GATCACAGTC CATAATTCTC ACACTATAAT TTTCGCGTAA TTTGTCTGCG AACGAAACGT 79078 .......... .......... .......... .......... .......... .......... 124 TTTTTTAATT GTTTTAGTAG ATTTTATTTA TATGCATGTA TGAGGAGAGA AGGAACTTAT 79018 .......... .......... .......... .......... .......... .......... 124 ATTATATTTC TTATCATTAA AACGTGCAGA GCAGAACAAA TTGTCAAACT CTAATATTAG 78958 .......... .......... .......... .......... .......... .......... 124 TGGCAGTAAG GCAATTTATG CCCTAGTACC TATTGAATTA TATGTTATTT TCTAATTTTT 78898 .......... .......... .......... .......... .......... .......... 124 AGTGTACTGA TTCAAATTTC TTCCTTATCT TTTATCTTAT TTTAATGGTA GAATGGAATT 78838 .......... .......... .......... .......... .......... .......... 124 CATATTAATA GAGAAATGTT CCTTCTAAAT TAATCCTTTT TCTAGTAGGA AAAGATTTAG 78778 ||||||| || ||| |||||| |||| ||||| .......... .......... .........C TAATCCT-TT TCTTGTAGGA AAAGGTTTAG 154 AACTCTATAA ATAGAGAAAT GTTCCTTCTA ACTTAATCAA CATTCACAAT GTAGTCTTAA 78718 ||||||||| ||||| ||| |||||| || ||||||||| |||||||||| ||| ||||| GACTCTATAA ATAGATGAAT ATTCCTTTTA ACTTAATCAG CATTCACAAT GTACTCTTAC 214 GGGCTTTGAG AGTTTTGATT AAGGGGAGAA TTTGTGGGTC ACAAGCTTGA TACGTTATCA 78658 ||||||||| ||||||| || | ||||||| | |||||||| |||||||||| || ||||||| AGGCTTTGAG AGTTTTGGTT AGAGGGAGAA TCTGTGGGTC ACAAGCTTGA TATGTTATCA 274 CTTGCGTGAA CCTCCCATGT ATTCTGAGTG AATTGTTTGA GGTTGTTTTC CTCTGTATTT 78598 |||| ||||| |||||||||| |||||||||| ||||| |||| ||||| || |||||||||| CTTGTGTGAA CCTCCCATGT ATTCTGAGTG AATTGGTTGA GGTTGATTCT CTCTGTATTT 334 TGTACTCTCA TATTTATAGT GAATTGTTCA TCT-CTTTGT GGACGTACGT CGATTGACCG 78539 |||||||| | |||||||||| | |||| ||| ||| |||||| ||||||| || ||||||||| TGTACTCTTA TATTTATAGT GGATTGCTCA TCTCCTTTGT GGACGTAGGT TGATTGACCG 394 AACCACATTA AATTTTTGTG TCTTTTGGTA TATTTCTCGT TGTCTTCTTA CTCGTGGCCT 78479 |||||| ||| ||| |||||| ||||||| || |||||||||| |||||||||| ||||||| || AACCACGTTA AATCTTTGTG TCTTTTGATA TATTTCTCGT TGTCTTCTTA CTCGTGGTCT 454 TTCGAGATTC GCTTTGCTAG CTTCCGCGTT TACA 78445 |||||| || | ||||||| |||||||||| |||| TTCGAGGTTT GTATTGCTAG CTTCCGCGTT TACA 488 hqPGS_C08HBa0197J17.1-_SGN-E205772+ (78808 78445) ******************************************************************************** EST sequence 95 +strand 456 n (File: SGN-E205773+) 1 AACAATTAGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTACC ATGTATTCTG 301 AGTGAATTGG TTGAAGCTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTACT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGATGGCTT CTTACTCGTG GTCTTT Predicted gene structure (within gDNA segment 81877 to 76840): Exon 1 81177 81172 ( 6 n); cDNA 119 124 ( 6 n); score: 0.833 Intron 1 81171 78809 (2363 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 2 78808 78477 ( 332 n); cDNA 125 456 ( 332 n); score: 0.887 MATCH C08HBa0197J17.1- SGN-E205773+ 0.887 338 0.741 C PGS_C08HBa0197J17.1-_SGN-E205773+ (81177 81172,78808 78477) Alignment (genomic DNA sequence = upper lines): AATTCAATAT ACTTCATTTA ATTCTACTCG AAATGATCAC TTAGGGTGCA ACAGCAGCTA 81118 |||| | AATTGA.... .......... .......... .......... .......... .......... 124 AAAAAAAGGT TTCCTCGTTT AATTACTATT TACTCACTTC AATAATATTT ATCCACGATG 81058 .......... .......... .......... .......... .......... .......... 124 AACTTCGTAT ATTCTTAAAA AGTTATAAAT AGAAAAATAA TTTACTATAT TATTATTTGA 80998 .......... .......... .......... .......... .......... .......... 124 ATATAATACA TATAATGTCT TAAAATGTAA TAGAAAAATA ACACGAACGA TAAATTAGAA 80938 .......... .......... .......... .......... .......... .......... 124 ATTAAATGTA AAATTATCTG CTCATTTCAT AAAGTAGACA AATATTATTA GACATCTCAA 80878 .......... .......... .......... .......... .......... .......... 124 AATAATACGC TCTCAATTCA CTTTTACTTG TCATTTATTC CTTAAATAAG TTTACAATTT 80818 .......... .......... .......... .......... .......... .......... 124 TTACTTGTTA CGTTTGATAT ATTAAGAAAA AGAACAATGA GTAATTTTTT TTCATGTTTT 80758 .......... .......... .......... .......... .......... .......... 124 ACCTTCATCA TTATATACTT ATTATCAAAA TCATTTCAAG AAATCATTCA ATAGGGAATA 80698 .......... .......... .......... .......... .......... .......... 124 TTGATAAAAC ACTTTCATAA TTACTTTTTT TTTTTAATAA TATATCAAAT CAAATCAGGA 80638 .......... .......... .......... .......... .......... .......... 124 TAAGTAAAAC AAATAAAAAA GTTACACAAA ATAATTATCG TATGACGAAA AGAGTAATAA 80578 .......... .......... .......... .......... .......... .......... 124 ACAAGACAAA TTATATACTC ATGTAGTGTA AAAGTTAGTA TTTCTTTACG ATAGTGCAAC 80518 .......... .......... .......... .......... .......... .......... 124 GCATGTGAGA TGTCCTCGGT TTCGTAAATT AATAATAAGC TATTTTAAAG TTCATATGGG 80458 .......... .......... .......... .......... .......... .......... 124 GAGAAAATGA AGTCATAAAC ACCAGTTTAC AAATATTCTT AAAAAATATC ATAACTATAT 80398 .......... .......... .......... .......... .......... .......... 124 GATTCTCTCT TTTTAATCCT ATTATAAATC CTCAATTGTC ACAATTATGA GTAGAAAAAA 80338 .......... .......... .......... .......... .......... .......... 124 TTTAACAAAC ATAGTAACAA AAAAGAATTA AATAGCGCGT AATAATACTT ATACCAAACT 80278 .......... .......... .......... .......... .......... .......... 124 AAATCAGGGA TGAATTCAAG AGTAAAATAT ACAAATTTAC ATTCCGAATC CTATTATTGT 80218 .......... .......... .......... .......... .......... .......... 124 CATTATTACT GAGTCTGATA TTAATTATTT TTTATTTATT TAAGATTTTT TTGACTCGTA 80158 .......... .......... .......... .......... .......... .......... 124 TATGAAGTTA AGAACCAAAA TTATAAAATT TAAATAAATT CATTAATTAT ACACAAGATG 80098 .......... .......... .......... .......... .......... .......... 124 CTTGCCCTTA CTAATGGTTG TGGATAAGTG AACGTGGCAC TAAAAAGCTC CACAAATGAC 80038 .......... .......... .......... .......... .......... .......... 124 TATATATAAT ACTCCCTCCA TTAAAAAAGA ATGACCTAAT TTGATTTGGA ACGGAGTTTA 79978 .......... .......... .......... .......... .......... .......... 124 AGAAAGAAGA TTTTTTAAAT TGTGATTCTA AATTAAAGTT ATGTCAAACA TACCAAAATG 79918 .......... .......... .......... .......... .......... .......... 124 TTCTTTAACC TTGTGGTCTT AAACACGCCA CGTGGAAAGA AAAGTTAAAA TATTGCCAAA 79858 .......... .......... .......... .......... .......... .......... 124 AATGAAATAG GTCATTCTTT TTAAAACAAA CTAAAAAAAA ATAAAGTTAT TCTTTTTTAA 79798 .......... .......... .......... .......... .......... .......... 124 ACGGAGAAAA TATACGTATA TTATAGTCAA TACTTCTATA TTATTTACCT ATATTGTGTA 79738 .......... .......... .......... .......... .......... .......... 124 TTTGATATCT GACTAAATTT GAATTCTTAA TTTATGTACT TTTTTATATG TATTGAAGTT 79678 .......... .......... .......... .......... .......... .......... 124 TCATTAAATT ATAATTGTCA TATTTCAAAA TTTGTTTTTA GGATAATACC CTGTCATGAT 79618 .......... .......... .......... .......... .......... .......... 124 TTTTCCCTTT TTAAGCTCTT AAACTAAAAA CTTTATTAAG AATGAACAAA TCTCAGTTAT 79558 .......... .......... .......... .......... .......... .......... 124 CTCATTACAA ATCATATTTA TTTCACTTCA TTCATACATC ATCAGTACAT GGTATAGTTG 79498 .......... .......... .......... .......... .......... .......... 124 ATTATAGTAC TCTAATTAAT AGCATAAACT TGCATTAACT TAATTAGTAA GATCAGTTTC 79438 .......... .......... .......... .......... .......... .......... 124 ATTACGTGAT AAATTATATT ACTACTGCAA CTAGCAAATG TTCGTGCATA AGTGAATGTG 79378 .......... .......... .......... .......... .......... .......... 124 GCACTAAAAA ATAAAAATAC CGTTTGGTTA TCGAGGAAAT AATACTGGTA CTAATTTATA 79318 .......... .......... .......... .......... .......... .......... 124 CCCTCTTTTG GTTGACATCA TCATTTCTGG TATATAGAAT TACTAATATT TATGAATTTT 79258 .......... .......... .......... .......... .......... .......... 124 TATATCGTAA TATCGATATA ATTTTTTAAT TTTTACTGTG TAATAATTTA TACAAAGATA 79198 .......... .......... .......... .......... .......... .......... 124 AAACACTTGA GCAAAATAAC TTGGATTTCG ATAGTCTCTG TTTATTACCT TAAAATATAA 79138 .......... .......... .......... .......... .......... .......... 124 GATCACAGTC CATAATTCTC ACACTATAAT TTTCGCGTAA TTTGTCTGCG AACGAAACGT 79078 .......... .......... .......... .......... .......... .......... 124 TTTTTTAATT GTTTTAGTAG ATTTTATTTA TATGCATGTA TGAGGAGAGA AGGAACTTAT 79018 .......... .......... .......... .......... .......... .......... 124 ATTATATTTC TTATCATTAA AACGTGCAGA GCAGAACAAA TTGTCAAACT CTAATATTAG 78958 .......... .......... .......... .......... .......... .......... 124 TGGCAGTAAG GCAATTTATG CCCTAGTACC TATTGAATTA TATGTTATTT TCTAATTTTT 78898 .......... .......... .......... .......... .......... .......... 124 AGTGTACTGA TTCAAATTTC TTCCTTATCT TTTATCTTAT TTTAATGGTA GAATGGAATT 78838 .......... .......... .......... .......... .......... .......... 124 CATATTAATA GAGAAATGTT CCTTCTAAAT TAATCCTTTT TCTAGTAGGA AAAGATTTAG 78778 ||||||| || ||| |||||| |||| ||||| .......... .......... .........C TAATCCT-TT TCTTGTAGGA AAAGGTTTAG 154 AACTCTATAA ATAGAGAAAT GTTCCTTCTA ACTTAATCAA CATTCACAAT GTAGTCTTAA 78718 ||||||||| ||||| ||| |||||| || ||||||||| |||||||||| ||||||||| GACTCTATAA ATAGATGAAT ATTCCTTTTA ACTTAATCAG CATTCACAAT GTAGTCTTAC 214 GGGCTTTGAG AGTTTTGATT AAGGGGAGAA TTTGTGGGTC ACAAGCTTGA TACGTTATCA 78658 ||||||||| ||||||| || | ||||||| | |||||||| |||||||||| || ||||||| AGGCTTTGAG AGTTTTGGTT AGAGGGAGAA TCTGTGGGTC ACAAGCTTGA TATGTTATCA 274 CTTGCGTGAA CCTCCCATGT ATTCTGAGTG AATTGTTTGA GGTTGTTTTC CTCTGTATTT 78598 |||| ||||| ||| |||||| |||||||||| ||||| |||| | ||||| |||||||||| CTTGTGTGAA CCTACCATGT ATTCTGAGTG AATTGGTTGA AGCTGTTTCT CTCTGTATTT 334 TGTACTCTCA TATTTATAGT GAATTGTTCA TCT-CTTTGT GGACGTACGT CGATTGACCG 78539 |||||||| | |||||||||| | |||| ||| ||| |||||| ||||||| || ||||||||| TGTACTCTTA TATTTATAGT GGATTGCTCA TCTACTTTGT GGACGTAGGT TGATTGACCG 394 AACCACATTA AATTTTTGTG TCTTTTGGTA TATTTCTCGT TGTCTTCTTA CTCGTGGCCT 78479 |||||| ||| ||| |||||| ||||||| || ||||||||| || ||||||| ||||||| || AACCACGTTA AATCTTTGTG TCTTTTGATA TATTTCTCGA TGGCTTCTTA CTCGTGGTCT 454 TT 78477 || TT 456 hqPGS_C08HBa0197J17.1-_SGN-E205773+ (78808 78477) ******************************************************************************** EST sequence 35 -strand 535 n (File: SGN-E243194-) 1 TTCAGAGAGA TTCTTTGTGT TGAGACATAA ATTTTGCAAA GGAGATTATG GAGAGGAGAA 61 GCAAGTTGTT GAAGATTAAG TGAAGAAGGT GGACAAGTTT ATTTGTCAGA AATTCAGGCC 121 AAGGGGGAGA CTTGTTGGGT TTTATTTGCC CTAAATTTCT TACCATAAAT AGGTTTTCCT 181 TGTAGGAAAA GGTTTTGGAT TGACTAATCC TTTTCTTGTA GGAAAAGGTT TTGGATTGAC 241 TAATCCTTTT CTTGTAGGAA AAGGTTTAGG ACTCCATAAA TAGAGGCATT TTTCTTCTAA 301 CTTAATCAGC ATTCAAAATG TAGTCTTAAG TGCTTTGAGA GTTTTGGTTA GAGGGAGAAT 361 TTGTGGGTCA CAAGCTTGAT ACGTTATCAC TTGTGTGAAC CTCCCATGTA TTCTGAGTGA 421 ATTGGTTGAG GTTGTTTCCC TCTGTATTTT GTACTCTCAT ATTTATAGTG GATTGCTCAT 481 CTCCTTTGTG GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTATGT CTTTT Predicted gene structure (within gDNA segment 84024 to 77327): Exon 1 78824 78513 ( 312 n); cDNA 224 535 ( 312 n); score: 0.886 MATCH C08HBa0197J17.1- SGN-E243194- 0.886 312 0.583 C PGS_C08HBa0197J17.1-_SGN-E243194- (78824 78513) Alignment (genomic DNA sequence = upper lines): AAATGTTCCT TCTAAATTAA TCCTTTTTCT AGTAGGAAAA GATTTAGAAC TCTATAAATA 78765 ||| ||| | | ||| ||| |||||| ||||||||| | ||||| || || ||||||| AAAGGTTTTG GATTGACTAA TCC-TTTTCT TGTAGGAAAA GGTTTAGGAC TCCATAAATA 282 GAGAAATGTT CCTTCTAACT TAATCAACAT TCACAATGTA GTCTTAAGGG CTTTGAGAGT 78705 ||| || || ||||||||| |||||| ||| ||| |||||| |||||||| | |||||||||| GAGGCATTTT TCTTCTAACT TAATCAGCAT TCAAAATGTA GTCTTAAGTG CTTTGAGAGT 342 TTTGATTAAG GGGAGAATTT GTGGGTCACA AGCTTGATAC GTTATCACTT GCGTGAACCT 78645 |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TTTGGTTAGA GGGAGAATTT GTGGGTCACA AGCTTGATAC GTTATCACTT GTGTGAACCT 402 CCCATGTATT CTGAGTGAAT TGTTTGAGGT TGTTTTCCTC TGTATTTTGT ACTCTCATAT 78585 |||||||||| |||||||||| || ||||||| ||||| |||| |||||||||| |||||||||| CCCATGTATT CTGAGTGAAT TGGTTGAGGT TGTTTCCCTC TGTATTTTGT ACTCTCATAT 462 TTATAGTGAA TTGTTCATCT -CTTTGTGGA CGTACGTCGA TTGACCGAAC CACATTAAAT 78526 |||||||| | ||| |||||| ||||||||| |||| ||||| |||||||||| ||| |||||| TTATAGTGGA TTGCTCATCT CCTTTGTGGA CGTAGGTCGA TTGACCGAAC CACGTTAAAT 522 TTTTGTGTCT TTT 78513 ||| ||||| ||| CTTTATGTCT TTT 535 hqPGS_C08HBa0197J17.1-_SGN-E243194- (78824 78513) ******************************************************************************** EST sequence 67 -strand 549 n (File: SGN-E349851-) 1 CAATGAGTTA GCAGAAATGC AGTTTTCCTT CTTTCTCTTC TGTGGATTTG TTGGAGTTTC 61 CCTTCTTAGT CCTGTGATGC ACAACTTGTG GATATGGAGG GGTACTGGCA ATGCCAACTT 121 TTACTTTGCA ACAGGAATGG CTTATGCTTG CTTCCAGATT ATATTGGTTG TTGAGAGTGT 181 GAGTGCTATG TTGAACCATG ACAGAAAGAT CAGAAAGTTG GTTGCAACTA CATAAGCTTG 241 AGATCTAAAC ATCATATACG AGTTCAATCC GATTATTCAT GATCATTTTT TTTGCCAGAC 301 AGATCCATAT TGCCGTTGGT TGCAGTTTCT TTAGATCAAC TCCATTGCAA CTTAACTGGG 361 TCTGAGTTTG CTTCCATGAT ATAGGGTTTC TACTTGTGGC TTTATGGAAT GGCCATTTAA 421 CGGATGTGTC GTAACACGTG ATAACTCATA CCAAATCATT GAATTCTGGC TTTTACACGC 481 AAGTTGTATG CTAATGTAAT CTCTCTCTGA TCGATTATAA AAAAAAAAAA AAAAAAAAAA 541 AAAAAACTC Predicted gene structure (within gDNA segment 86673 to 83746): Exon 1 86044 86031 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 86030 85960 ( 71 n); Pd: 0.985 (s: 0), Pa: 0.114 (s: 1.00) Exon 2 85959 85874 ( 86 n); cDNA 15 100 ( 86 n); score: 1.000 Intron 2 85873 85758 ( 116 n); Pd: 0.916 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 3 85757 85701 ( 57 n); cDNA 101 157 ( 57 n); score: 1.000 Intron 3 85700 84999 ( 702 n); Pd: 0.977 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 84998 84637 ( 362 n); cDNA 158 519 ( 362 n); score: 1.000 PPA cDNA 520 547 MATCH C08HBa0197J17.1- SGN-E349851- 1.000 519 0.945 C PGS_C08HBa0197J17.1-_SGN-E349851- (86044 86031,85959 85874,85757 85701,84998 84637) Alignment (genomic DNA sequence = upper lines): CAATGAGTTA GCAGGTACTA AGCTTACCCT TTTCACTTGA TTACGGTCCT AACTGGATTA 85985 |||||||||| |||| CAATGAGTTA GCAG...... .......... .......... .......... .......... 14 TATCTGACCA TTATACTCAT TGCAGAAATG CAGTTTTCCT TCTTTCTCTT CTGTGGATTT 85925 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....AAATG CAGTTTTCCT TCTTTCTCTT CTGTGGATTT 49 GTTGGAGTTT CCCTTCTTAG TCCTGTGATG CACAACTTGT GGATATGGAG GGTATATATC 85865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTTGGAGTTT CCCTTCTTAG TCCTGTGATG CACAACTTGT GGATATGGAG G......... 100 CGCTTCATTA GTATGCTTAT GCATTATTGC TCCTAGTGTA ATTTTAAACA TTAAGGTAAT 85805 .......... .......... .......... .......... .......... .......... 100 GCCAGATATG CATTAGGTGC TTGTGCAAAT AATTACTACC TTTGCAGGGT ACTGGCAATG 85745 ||| |||||||||| .......... .......... .......... .......... .......GGT ACTGGCAATG 113 CCAACTTTTA CTTTGCAACA GGAATGGCTT ATGCTTGCTT CCAGGTTTGT TTTGGTACCT 85685 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCAACTTTTA CTTTGCAACA GGAATGGCTT ATGCTTGCTT CCAG...... .......... 157 TTACTGGAAT AATTCTTGGT ATGTATGGCT TGTGAAACAT GTCATGCATT AAGAGAGTTC 85625 .......... .......... .......... .......... .......... .......... 157 TGCGTCAAAT CAATTGATAT CTGACCTGTG AAACATGTCA TGTAATAATT ATTCAAAACC 85565 .......... .......... .......... .......... .......... .......... 157 GGCTGGGTTA TTTTCTATTC TTTGTCATGG AGCTAGACAG CTAATAGTAT TCTAGTAGAG 85505 .......... .......... .......... .......... .......... .......... 157 TGACATGGCT TCTTCATAGA TAAGAAGGTT GTGTAATCAT GGTTTTGTTT CCTAATCTAA 85445 .......... .......... .......... .......... .......... .......... 157 ATGAACTACT ACTTTTATAA TCACCTTAGT CTATCAGTAG GGCAACACAT TCTTGCCTTC 85385 .......... .......... .......... .......... .......... .......... 157 ATCTTTTCTT AAGCAAAAAA CCAGTCATGC TAGGACATTG TCAGTCAAAC TCCTTTCTGT 85325 .......... .......... .......... .......... .......... .......... 157 GGATGGTGGC CATTAAGTTT GAACCCCATA AACCTGCTCT TACCAATGCA GTCACGACTC 85265 .......... .......... .......... .......... .......... .......... 157 ATGTCATCAG ATATAAGTTG TCTAGACATT GAACATATAG GATGCAGTAC ATTCATGTTG 85205 .......... .......... .......... .......... .......... .......... 157 TAATATCATT GCTGAGGTTT GAATCCCTAT TGTTTAAGTT GACAATTTGA CTAGTCTCTT 85145 .......... .......... .......... .......... .......... .......... 157 CTGAGGTTAG CTGGACTCCC TTGCGCAGTT TTGTTCTATG GATTCAGCAG ATTATTCAAA 85085 .......... .......... .......... .......... .......... .......... 157 TCGCATAATT GCGCACCCTA GCTTTTGGGG TCCTGCTCCT CATCTATATT TGTTTATTTT 85025 .......... .......... .......... .......... .......... .......... 157 GATGTTGTAT ATTCTTACCC GTGCAGATTA TATTGGTTGT TGAGAGTGTG AGTGCTATGT 84965 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......ATTA TATTGGTTGT TGAGAGTGTG AGTGCTATGT 191 TGAACCATGA CAGAAAGATC AGAAAGTTGG TTGCAACTAC ATAAGCTTGA GATCTAAACA 84905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCATGA CAGAAAGATC AGAAAGTTGG TTGCAACTAC ATAAGCTTGA GATCTAAACA 251 TCATATACGA GTTCAATCCG ATTATTCATG ATCATTTTTT TTGCCAGACA GATCCATATT 84845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATATACGA GTTCAATCCG ATTATTCATG ATCATTTTTT TTGCCAGACA GATCCATATT 311 GCCGTTGGTT GCAGTTTCTT TAGATCAACT CCATTGCAAC TTAACTGGGT CTGAGTTTGC 84785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTTGGTT GCAGTTTCTT TAGATCAACT CCATTGCAAC TTAACTGGGT CTGAGTTTGC 371 TTCCATGATA TAGGGTTTCT ACTTGTGGCT TTATGGAATG GCCATTTAAC GGATGTGTCG 84725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCATGATA TAGGGTTTCT ACTTGTGGCT TTATGGAATG GCCATTTAAC GGATGTGTCG 431 TAACACGTGA TAACTCATAC CAAATCATTG AATTCTGGCT TTTACACGCA AGTTGTATGC 84665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACACGTGA TAACTCATAC CAAATCATTG AATTCTGGCT TTTACACGCA AGTTGTATGC 491 TAATGTAATC TCTCTCTGAT CGATTATA 84637 |||||||||| |||||||||| |||||||| TAATGTAATC TCTCTCTGAT CGATTATA 519 hqPGS_C08HBa0197J17.1-_SGN-E349851- (86044 86031,85959 85874,85757 85701,84998 84637) ******************************************************************************** EST sequence 42 -strand 459 n (File: SGN-E353220-) 1 GATATGGAGG GGTACTGGCA ATGCCAACTT TTACTTTGCA ACAGGAATGG CTTATGCTTG 61 CTTCCAGATT ATATTGGTTG TTGAGAGTGT GAGTGCTATG TTGAACCATG ACAGAAAGAT 121 CAGAAAGTTG GTTGCAACTA CATAAGCTTG AGATCTAAAC ATCATATACG AGTTCAATCC 181 GATTATTCAT GATCATTTTT TTTGCCAGAC AGATCCATAT TGCCGTTGGT TGCAGTTTCT 241 TTAGATCAAC TCCATTGCAA CTTAACTGGG TCTGAGTTTG CTTCCATGAT ATAGGGTTTC 301 TACTTGTGGC TTTATGGAAT GGCCATTTAA CGGATGTGTC GTAACACGTG ATAACTCATA 361 CCAAATCATT GAATTCTGGC TTTTACACGC AAGTTGTATG CTAATGTAAT CTCTCTCTGA 421 TCGATTATAA AAAAAAAAAA AAAAAAAAAA AAAAAACTC Predicted gene structure (within gDNA segment 86458 to 83746): Exon 1 85883 85874 ( 10 n); cDNA 1 10 ( 10 n); score: 1.000 Intron 1 85873 85758 ( 116 n); Pd: 0.916 (s: 0), Pa: 0.986 (s: 1.00) Exon 2 85757 85701 ( 57 n); cDNA 11 67 ( 57 n); score: 1.000 Intron 2 85700 84999 ( 702 n); Pd: 0.977 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 84998 84637 ( 362 n); cDNA 68 429 ( 362 n); score: 1.000 PPA cDNA 430 457 MATCH C08HBa0197J17.1- SGN-E353220- 1.000 429 0.935 C PGS_C08HBa0197J17.1-_SGN-E353220- (85883 85874,85757 85701,84998 84637) Alignment (genomic DNA sequence = upper lines): GATATGGAGG GTATATATCC GCTTCATTAG TATGCTTATG CATTATTGCT CCTAGTGTAA 85824 |||||||||| GATATGGAGG .......... .......... .......... .......... .......... 10 TTTTAAACAT TAAGGTAATG CCAGATATGC ATTAGGTGCT TGTGCAAATA ATTACTACCT 85764 .......... .......... .......... .......... .......... .......... 10 TTGCAGGGTA CTGGCAATGC CAACTTTTAC TTTGCAACAG GAATGGCTTA TGCTTGCTTC 85704 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GGTA CTGGCAATGC CAACTTTTAC TTTGCAACAG GAATGGCTTA TGCTTGCTTC 64 CAGGTTTGTT TTGGTACCTT TACTGGAATA ATTCTTGGTA TGTATGGCTT GTGAAACATG 85644 ||| CAG....... .......... .......... .......... .......... .......... 67 TCATGCATTA AGAGAGTTCT GCGTCAAATC AATTGATATC TGACCTGTGA AACATGTCAT 85584 .......... .......... .......... .......... .......... .......... 67 GTAATAATTA TTCAAAACCG GCTGGGTTAT TTTCTATTCT TTGTCATGGA GCTAGACAGC 85524 .......... .......... .......... .......... .......... .......... 67 TAATAGTATT CTAGTAGAGT GACATGGCTT CTTCATAGAT AAGAAGGTTG TGTAATCATG 85464 .......... .......... .......... .......... .......... .......... 67 GTTTTGTTTC CTAATCTAAA TGAACTACTA CTTTTATAAT CACCTTAGTC TATCAGTAGG 85404 .......... .......... .......... .......... .......... .......... 67 GCAACACATT CTTGCCTTCA TCTTTTCTTA AGCAAAAAAC CAGTCATGCT AGGACATTGT 85344 .......... .......... .......... .......... .......... .......... 67 CAGTCAAACT CCTTTCTGTG GATGGTGGCC ATTAAGTTTG AACCCCATAA ACCTGCTCTT 85284 .......... .......... .......... .......... .......... .......... 67 ACCAATGCAG TCACGACTCA TGTCATCAGA TATAAGTTGT CTAGACATTG AACATATAGG 85224 .......... .......... .......... .......... .......... .......... 67 ATGCAGTACA TTCATGTTGT AATATCATTG CTGAGGTTTG AATCCCTATT GTTTAAGTTG 85164 .......... .......... .......... .......... .......... .......... 67 ACAATTTGAC TAGTCTCTTC TGAGGTTAGC TGGACTCCCT TGCGCAGTTT TGTTCTATGG 85104 .......... .......... .......... .......... .......... .......... 67 ATTCAGCAGA TTATTCAAAT CGCATAATTG CGCACCCTAG CTTTTGGGGT CCTGCTCCTC 85044 .......... .......... .......... .......... .......... .......... 67 ATCTATATTT GTTTATTTTG ATGTTGTATA TTCTTACCCG TGCAGATTAT ATTGGTTGTT 84984 ||||| |||||||||| .......... .......... .......... .......... .....ATTAT ATTGGTTGTT 82 GAGAGTGTGA GTGCTATGTT GAACCATGAC AGAAAGATCA GAAAGTTGGT TGCAACTACA 84924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGTGTGA GTGCTATGTT GAACCATGAC AGAAAGATCA GAAAGTTGGT TGCAACTACA 142 TAAGCTTGAG ATCTAAACAT CATATACGAG TTCAATCCGA TTATTCATGA TCATTTTTTT 84864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGCTTGAG ATCTAAACAT CATATACGAG TTCAATCCGA TTATTCATGA TCATTTTTTT 202 TGCCAGACAG ATCCATATTG CCGTTGGTTG CAGTTTCTTT AGATCAACTC CATTGCAACT 84804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAGACAG ATCCATATTG CCGTTGGTTG CAGTTTCTTT AGATCAACTC CATTGCAACT 262 TAACTGGGTC TGAGTTTGCT TCCATGATAT AGGGTTTCTA CTTGTGGCTT TATGGAATGG 84744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTGGGTC TGAGTTTGCT TCCATGATAT AGGGTTTCTA CTTGTGGCTT TATGGAATGG 322 CCATTTAACG GATGTGTCGT AACACGTGAT AACTCATACC AAATCATTGA ATTCTGGCTT 84684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTTAACG GATGTGTCGT AACACGTGAT AACTCATACC AAATCATTGA ATTCTGGCTT 382 TTACACGCAA GTTGTATGCT AATGTAATCT CTCTCTGATC GATTATA 84637 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTACACGCAA GTTGTATGCT AATGTAATCT CTCTCTGATC GATTATA 429 hqPGS_C08HBa0197J17.1-_SGN-E353220- (85883 85874,85757 85701,84998 84637) ******************************************************************************** EST sequence 117 +strand 602 n (File: SGN-E247017+) 1 GGGTTGTAGC ATCTCATTTG TCTCTCTATC CGACAATCCT GATTATGCCT GTAATCTTGC 61 TATTAGGTAA TGGTCCAGAT GCAACCCCAA GGAAATTGTT CCTGATGTAT AAGAAAGATG 121 AAGCTGACAA CTCAAGTAAA GGCCGGGTGG TAAATGGCTT ATCAGAACAA AAAAACTTCT 181 CATGGAGACC AGTTGGACTC TTCTTTGTCT GGGTTTTTAT TTGGACCTTG TATACATTGG 241 TTTTGTGTGG CATCTTCATG AGAAACTATG GTGGCATTTC AGAAATGTTT AACAGGACCT 301 ATGGGTTTAT TCTTACTGTC AAAGATTTGT CTCCAAACAT TGGTGTCTTG TGGTACTTCT 361 TTGCCGAGGT CTTTGAATTT TTCAGAGACT TCTTTCTGAT TGTTTTTCAT GTGAACATCC 421 TTTTCATGAT ACTGCCACTA GCCATAAGGC TAAAGCACCG GCCGTGTTTC TTGGCTTTTG 481 TTTACATGGC AATCTGTTCA ATACTTAAGC CCTATCCTTC AGTTGGGGAC TCAGCTCTAT 541 ACTTGGCTTT GTTAGCTTTG TTTTTCAATG AGTTAGCAGA AATGCAGGTT TCCTTCTTTC 601 TC Predicted gene structure (within gDNA segment 88799 to 85191): Exon 1 88199 88150 ( 50 n); cDNA 1 50 ( 50 n); score: 0.980 Intron 1 88149 87996 ( 154 n); Pd: 0.990 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 2 87995 87751 ( 245 n); cDNA 51 295 ( 245 n); score: 1.000 Intron 2 87750 87603 ( 148 n); Pd: 0.979 (s: 1.00), Pa: 0.904 (s: 1.00) Exon 3 87602 87546 ( 57 n); cDNA 296 352 ( 57 n); score: 1.000 Intron 3 87545 87471 ( 75 n); Pd: 0.982 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 87470 87302 ( 169 n); cDNA 353 521 ( 169 n); score: 1.000 Intron 4 87301 86089 (1213 n); Pd: 0.907 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 5 86088 86031 ( 58 n); cDNA 522 579 ( 58 n); score: 1.000 Intron 5 86030 85960 ( 71 n); Pd: 0.985 (s: 1.00), Pa: 0.114 (s: 0) Exon 6 85959 85937 ( 23 n); cDNA 580 602 ( 23 n); score: 0.957 MATCH C08HBa0197J17.1- SGN-E247017+ 0.998 602 1.000 C PGS_C08HBa0197J17.1-_SGN-E247017+ (88199 88150,87995 87751,87602 87546,87470 87302,86088 86031,85959 85937) Alignment (genomic DNA sequence = upper lines): GGGTTGTAGC ATCTCATTTG TCTCTCTATC CGACAATCCT GATTATACCT GTAAGTTTTT 88140 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GGGTTGTAGC ATCTCATTTG TCTCTCTATC CGACAATCCT GATTATGCCT .......... 50 CTTGTCATAA TGTCATAAAA AGCTGAAATA TTGCATAAGT TTAAAAGGAA AGAGTGGAAA 88080 .......... .......... .......... .......... .......... .......... 50 TACCTATGAA GTCTGTCTTC TTTAGTTTGT GAATATTAAT GTTTATGAGT TCTTCTAATT 88020 .......... .......... .......... .......... .......... .......... 50 TCTATTAGGT TCTTCTTGAT CCAGGTAATC TTGCTATTAG GTAATGGTCC AGATGCAACC 87960 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTAATC TTGCTATTAG GTAATGGTCC AGATGCAACC 86 CCAAGGAAAT TGTTCCTGAT GTATAAGAAA GATGAAGCTG ACAACTCAAG TAAAGGCCGG 87900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGGAAAT TGTTCCTGAT GTATAAGAAA GATGAAGCTG ACAACTCAAG TAAAGGCCGG 146 GTGGTAAATG GCTTATCAGA ACAAAAAAAC TTCTCATGGA GACCAGTTGG ACTCTTCTTT 87840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTAAATG GCTTATCAGA ACAAAAAAAC TTCTCATGGA GACCAGTTGG ACTCTTCTTT 206 GTCTGGGTTT TTATTTGGAC CTTGTATACA TTGGTTTTGT GTGGCATCTT CATGAGAAAC 87780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGGGTTT TTATTTGGAC CTTGTATACA TTGGTTTTGT GTGGCATCTT CATGAGAAAC 266 TATGGTGGCA TTTCAGAAAT GTTTAACAGG TACTAGTTAT TTTCTTGTGC TCGTCATTGC 87720 |||||||||| |||||||||| ||||||||| TATGGTGGCA TTTCAGAAAT GTTTAACAG. .......... .......... .......... 295 CTAGACAACC TTCACGTTTA GATATTCAAT TGATCTTGGT ATAAATGGAG GGATATTGAT 87660 .......... .......... .......... .......... .......... .......... 295 AGAAAGGATT CATGTAGCCA AGACTTACTA GCTCAAAATC ATTTTATTCA CTTGCAGGAC 87600 ||| .......... .......... .......... .......... .......... .......GAC 298 CTATGGGTTT ATTCTTACTG TCAAAGATTT GTCTCCAAAC ATTGGTGTCT TGTGGTAAGT 87540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CTATGGGTTT ATTCTTACTG TCAAAGATTT GTCTCCAAAC ATTGGTGTCT TGTG...... 352 GACTATAGAA TTGCTTTCTC TGTGAATTGT CTCTTCTTTC ATTAACCTCT TTGTGCATCT 87480 .......... .......... .......... .......... .......... .......... 352 TGGCTGCAGG TACTTCTTTG CCGAGGTCTT TGAATTTTTC AGAGACTTCT TTCTGATTGT 87420 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TACTTCTTTG CCGAGGTCTT TGAATTTTTC AGAGACTTCT TTCTGATTGT 403 TTTTCATGTG AACATCCTTT TCATGATACT GCCACTAGCC ATAAGGCTAA AGCACCGGCC 87360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCATGTG AACATCCTTT TCATGATACT GCCACTAGCC ATAAGGCTAA AGCACCGGCC 463 GTGTTTCTTG GCTTTTGTTT ACATGGCAAT CTGTTCAATA CTTAAGCCCT ATCCTTCAGT 87300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGTTTCTTG GCTTTTGTTT ACATGGCAAT CTGTTCAATA CTTAAGCCCT ATCCTTCA.. 521 GAGTACTCTT TTCCTAAGTG AATCTTTAAT GCCTAAATCC TATCCATACG GATCACTATT 87240 .......... .......... .......... .......... .......... .......... 521 TCCTAAATTT CACTTCACTC AGGAATATTT TAAAATTCTA AATTTGATGT TTGAAGATTA 87180 .......... .......... .......... .......... .......... .......... 521 AGCACTTCAA CCTCTTACAC CATGAGATAA TTGTCAATAT GTGAAATTAT GACCCCTGCA 87120 .......... .......... .......... .......... .......... .......... 521 GGATAACTGG AATCATGTCT GTGATTTTTC CCCCTTTTTA TGTGGGGGTG GGGTTACAAT 87060 .......... .......... .......... .......... .......... .......... 521 TTGCAGTCCC CTTTCTAAGA GGATGTGTTA GGACTGTGTA GTTGAGAGTT TCTTGATTTT 87000 .......... .......... .......... .......... .......... .......... 521 TCCATTATCA GTAGGATGCT GAATTTATCA TCTAGTACTC CATCTAGTTG CAAAGTCTGT 86940 .......... .......... .......... .......... .......... .......... 521 CTGACACTTT TGTTTCAGTC ATGATGCTGT CATACATGTA TCTTTCTATG TTAGTATGGA 86880 .......... .......... .......... .......... .......... .......... 521 TGACAATGGG GTGGGGAAAG GGCAGGGCGG GCAGATTACG TCCTTAACAG CTCATGGCAC 86820 .......... .......... .......... .......... .......... .......... 521 GAGCAATTAA GTAGGGTAGG GCAGGGTAAA TTATTCTTAA GAAATAAATA ACAGAGCAGG 86760 .......... .......... .......... .......... .......... .......... 521 GCAGTTGTGG GTCAAGATGA TGAGTTCTGA TTTTCTCATT ATTGGTCATT GGCATTTGTA 86700 .......... .......... .......... .......... .......... .......... 521 GCTAGGAATG GTATGGAATT TGAAAATATA GTAGCAGTCA GTTTTTATGT TCTTCATGTA 86640 .......... .......... .......... .......... .......... .......... 521 ACTTATAATC ATTATACACC AGTCTCTATC ACAGTTTACA CTAGTAACTG TGAACACTAA 86580 .......... .......... .......... .......... .......... .......... 521 TCTAGCGAGC AACAAATAAT TTGGATTCTT TTGGGTCTAA GATTGGATAA TTTGAAGTTG 86520 .......... .......... .......... .......... .......... .......... 521 GCACAGTAAA ATTCCTTTAC GAGTTATTAT GTTTTCTTTT TTCCCCCGGT ACTTCTTCAT 86460 .......... .......... .......... .......... .......... .......... 521 ATATTTAAAT AATATGTGGA CTATATATGG ATTAAAATAG CTTAAATGGG TTGGGGCAGG 86400 .......... .......... .......... .......... .......... .......... 521 ACGGGTCTAA GCAGAGCCTG TAGGGCAGGG CTAAATCATG GAAAATTGCT AAATAGGGCA 86340 .......... .......... .......... .......... .......... .......... 521 GGGCAGGTGG GTTGAAATCT TAGCAGATCA AGGCTGCCCT ATCCTGCCCT GCCCCATTTA 86280 .......... .......... .......... .......... .......... .......... 521 CATCCCTAGA TGTTAGGCTG ATTCTGAAAT TATGTTTCTG AGATTTACCT TGTTTGACAA 86220 .......... .......... .......... .......... .......... .......... 521 AACATAAGCT GCTTGCGTCT TAACTTTCAT CAAGTCGAAT AAATTGCTCG GTATTTGTAT 86160 .......... .......... .......... .......... .......... .......... 521 TTGCTTGTGT TTTTTGCAAT ACATTATGAT CATATCTTGG CTCCTGCTTA ACCTGGTTCA 86100 .......... .......... .......... .......... .......... .......... 521 AAATTGATCA GGTTGGGGAC TCAGCTCTAT ACTTGGCTTT GTTAGCTTTG TTTTTCAATG 86040 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTTGGGGAC TCAGCTCTAT ACTTGGCTTT GTTAGCTTTG TTTTTCAATG 570 AGTTAGCAGG TACTAAGCTT ACCCTTTTCA CTTGATTACG GTCCTAACTG GATTATATCT 85980 ||||||||| AGTTAGCAG. .......... .......... .......... .......... .......... 579 GACCATTATA CTCATTGCAG AAATGCAGTT TTCCTTCTTT CTC 85937 |||||||| | |||||||||| ||| .......... .......... AAATGCAGGT TTCCTTCTTT CTC 602 hqPGS_C08HBa0197J17.1-_SGN-E247017+ (88199 88150,87995 87751,87602 87546,87470 87302,86088 86031,85959 85937) ******************************************************************************** EST sequence 92 +strand 418 n (File: SGN-E286181+) 1 TGAAATTTCT GAGATTCTAC CATCGGAGGA CATTGCAGCT GTTGTGTACT TGTGGAACCC 61 TTTAACCATA GTCACATGTG TGGGTTTCAA TACAACCCCT GTGGAAAATC TTTTTATTAT 121 CTTGTCACTT TATGGAGCCT GCATCCGAGT AGCCCCATTG GCAGCTTTTG GGTGGGTTGT 181 AGCATCTCAT TTGTCTCTCT ATCCGACAAT CCTGATTATA CCTGTAATCT TGCTATTAGG 241 TAATGGTCCA GATGCAACCC CAAGGAAATT GTTCCTGATG TATAAGAAAG ATGAAGCTGA 301 CAACTCAAGT AAAGGCCGGG TGGTAAATGG CTTATCAGAA CAAAAAAACT TCTCATGGAG 361 ACCAGGTGGA CTCTTGTTTG TCTGGGTTTT TATTTGGACC TTGTATACAT TGGTTTTG Predicted gene structure (within gDNA segment 89328 to 87191): Exon 1 88712 88702 ( 11 n); cDNA 1 11 ( 11 n); score: 1.000 Intron 1 88701 88628 ( 74 n); Pd: 0.942 (s: 0), Pa: 0.966 (s: 0.98) Exon 2 88627 88493 ( 135 n); cDNA 12 146 ( 135 n); score: 0.993 Intron 2 88492 88227 ( 266 n); Pd: 0.942 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 88226 88150 ( 77 n); cDNA 147 223 ( 77 n); score: 1.000 Intron 3 88149 87996 ( 154 n); Pd: 0.990 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 87995 87801 ( 195 n); cDNA 224 418 ( 195 n); score: 0.990 MATCH C08HBa0197J17.1- SGN-E286181+ 0.993 418 1.000 C PGS_C08HBa0197J17.1-_SGN-E286181+ (88712 88702,88627 88493,88226 88150,87995 87801) Alignment (genomic DNA sequence = upper lines): TGAAATTTCT GGTGAATATT CAGCTTTAAT GTCGAAATTT ATTTGCTTCT TCACTAGTTA 88653 |||||||||| | TGAAATTTCT G......... .......... .......... .......... .......... 11 ATGATGCAAT AACCCCTTGT TTCAGAGATT CTACCATCGG AGGACATTGC AGCTCTTGTG 88593 ||||| |||||||||| |||||||||| |||| ||||| .......... .......... .....AGATT CTACCATCGG AGGACATTGC AGCTGTTGTG 46 TACTTGTGGA ACCCTTTAAC CATAGTCACA TGTGTGGGTT TCAATACAAC CCCTGTGGAA 88533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGTGGA ACCCTTTAAC CATAGTCACA TGTGTGGGTT TCAATACAAC CCCTGTGGAA 106 AATCTTTTTA TTATCTTGTC ACTTTATGGA GCCTGCATCC GTAAGAAGTC AATAATCCTT 88473 |||||||||| |||||||||| |||||||||| |||||||||| AATCTTTTTA TTATCTTGTC ACTTTATGGA GCCTGCATCC .......... .......... 146 TTTATATGTT AGTGATTTTT TTCTTTTCTT CTTTTTATAT AGTTTACTCG CCACTCCATT 88413 .......... .......... .......... .......... .......... .......... 146 TATCTTTATG CTTTTATTGA AGGGGAAACT AGGCATATTT GTCCCTTCCT TCTTGGTGCT 88353 .......... .......... .......... .......... .......... .......... 146 CTTGATAGGA CATGCTCTTT GATTTTCACT TGTTGTAGTG AATATAGCTT TTCGTTTTCC 88293 .......... .......... .......... .......... .......... .......... 146 TTTTCAAAAA GAGAATTTCT TATGGTGCTT GTATATGAAC TGATTAATTT ACTCGTTTGT 88233 .......... .......... .......... .......... .......... .......... 146 GTACAGGAGT AGCCCCATTG GCAGCTTTTG GGTGGGTTGT AGCATCTCAT TTGTCTCTCT 88173 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAGT AGCCCCATTG GCAGCTTTTG GGTGGGTTGT AGCATCTCAT TTGTCTCTCT 200 ATCCGACAAT CCTGATTATA CCTGTAAGTT TTTCTTGTCA TAATGTCATA AAAAGCTGAA 88113 |||||||||| |||||||||| ||| ATCCGACAAT CCTGATTATA CCT....... .......... .......... .......... 223 ATATTGCATA AGTTTAAAAG GAAAGAGTGG AAATACCTAT GAAGTCTGTC TTCTTTAGTT 88053 .......... .......... .......... .......... .......... .......... 223 TGTGAATATT AATGTTTATG AGTTCTTCTA ATTTCTATTA GGTTCTTCTT GATCCAGGTA 87993 ||| .......... .......... .......... .......... .......... .......GTA 226 ATCTTGCTAT TAGGTAATGG TCCAGATGCA ACCCCAAGGA AATTGTTCCT GATGTATAAG 87933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGCTAT TAGGTAATGG TCCAGATGCA ACCCCAAGGA AATTGTTCCT GATGTATAAG 286 AAAGATGAAG CTGACAACTC AAGTAAAGGC CGGGTGGTAA ATGGCTTATC AGAACAAAAA 87873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATGAAG CTGACAACTC AAGTAAAGGC CGGGTGGTAA ATGGCTTATC AGAACAAAAA 346 AACTTCTCAT GGAGACCAGT TGGACTCTTC TTTGTCTGGG TTTTTATTTG GACCTTGTAT 87813 |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AACTTCTCAT GGAGACCAGG TGGACTCTTG TTTGTCTGGG TTTTTATTTG GACCTTGTAT 406 ACATTGGTTT TG 87801 |||||||||| || ACATTGGTTT TG 418 hqPGS_C08HBa0197J17.1-_SGN-E286181+ (88712 88702,88627 88493,88226 88150,87995 87801) ******************************************************************************** EST sequence 113 +strand 709 n (File: SGN-E332311+) 1 CGGTTCGAAA TTCGATCGCT GCAACGCTGC TACCACAGCC ATTGGAGCTG GATCTGGAAG 61 CTCTGGTGCG GTAGCAATAA TGAAAGAGGA GGAGGAGAAG AAGAATATGA AAACGAAGCC 121 ACACTTTTGG AGATGGGCAG TAGCATCAAT GATCTTCAGA TTAGTTCTCA TTTACTTTCC 181 CAAAAACCTT AACTTAGCTA CTCGTCCAGA AGTTTCCACT CCGGTCACCA GTCTACGCCG 241 ACTGGCAGAA GGTTACTGGT TAACGCAGTC ATCGATGTCT CCGTATGCCG GTTCTATGTA 301 TCATGGTTCT CCACTTCTGC TCTCGGTTCT CGGTCCGCTT ACAATGAAGA AAATTGAAGG 361 ACAGCCTTAT CATCTTCTAT GCAGATTTCA TCTCTGCCAT GCTAATCCGG GCAACTGGCC 421 TTAAACTTCG CATGGCATAT TGTGAGAGAT TAAAATCGCT GGGTTTGGGG AAGCTCTTTG 481 AAATTTCTGA GATTCTACCA TCGGAGGACA TTGCAGCTCT TGTGTACTTG TGGAACCCTT 541 TAACCATAGT CACATGTGTG GGTTTCAATA CAACCCCTGT GGAAAATCTT TTTATTATCT 601 TGTCACTTTA TGGAGCCTGC ATCCGTAAGA AGTCAATAAT CCTTTTTATA TGAGTAGCCC 661 CATTGGCAGC TTTTGGGTGG GTTGTAGCAT CTCATTTGTC TCTCTATCC Predicted gene structure (within gDNA segment 91496 to 87559): Exon 1 90896 90655 ( 242 n); cDNA 1 242 ( 242 n); score: 1.000 Intron 1 90654 90556 ( 99 n); Pd: 0.378 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 90555 90508 ( 48 n); cDNA 243 290 ( 48 n); score: 1.000 Intron 2 90507 90153 ( 355 n); Pd: 0.997 (s: 1.00), Pa: 0.705 (s: 1.00) Exon 3 90152 90092 ( 61 n); cDNA 291 351 ( 61 n); score: 1.000 Intron 3 90091 89991 ( 101 n); Pd: 0.920 (s: 1.00), Pa: 0.888 (s: 0) Exon 4 89990 89958 ( 33 n); cDNA 352 384 ( 33 n); score: 1.000 Intron 4 89957 88807 (1151 n); Pd: 0.998 (s: 0), Pa: 0.984 (s: 1.00) Exon 5 88806 88702 ( 105 n); cDNA 385 489 ( 105 n); score: 1.000 Intron 5 88701 88628 ( 74 n); Pd: 0.942 (s: 1.00), Pa: 0.966 (s: 1.00) Exon 6 88627 88466 ( 162 n); cDNA 490 651 ( 162 n); score: 1.000 Intron 6 88465 88227 ( 239 n); Pd: 0.547 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 7 88226 88169 ( 58 n); cDNA 652 709 ( 58 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E332311+ 1.000 709 1.000 C PGS_C08HBa0197J17.1-_SGN-E332311+ (90896 90655,90555 90508,90152 90092,89990 89958,88806 88702,88627 88466,88226 88169) Alignment (genomic DNA sequence = upper lines): CGGTTCGAAA TTCGATCGCT GCAACGCTGC TACCACAGCC ATTGGAGCTG GATCTGGAAG 90837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTCGAAA TTCGATCGCT GCAACGCTGC TACCACAGCC ATTGGAGCTG GATCTGGAAG 60 CTCTGGTGCG GTAGCAATAA TGAAAGAGGA GGAGGAGAAG AAGAATATGA AAACGAAGCC 90777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGGTGCG GTAGCAATAA TGAAAGAGGA GGAGGAGAAG AAGAATATGA AAACGAAGCC 120 ACACTTTTGG AGATGGGCAG TAGCATCAAT GATCTTCAGA TTAGTTCTCA TTTACTTTCC 90717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTTTTGG AGATGGGCAG TAGCATCAAT GATCTTCAGA TTAGTTCTCA TTTACTTTCC 180 CAAAAACCTT AACTTAGCTA CTCGTCCAGA AGTTTCCACT CCGGTCACCA GTCTACGCCG 90657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAACCTT AACTTAGCTA CTCGTCCAGA AGTTTCCACT CCGGTCACCA GTCTACGCCG 240 ACGTATTCAA TCTTGCCGGA ATTCATAATT ATTCATACAG TACCTCCCTG TATAAGTATA 90597 || AC........ .......... .......... .......... .......... .......... 242 AGTATTTTGA TTAACTTTTT TTTTTTTTTT ACTCTTAATA GTGGCAGAAG GTTACTGGTT 90537 ||||||||| |||||||||| .......... .......... .......... .......... .TGGCAGAAG GTTACTGGTT 261 AACGCAGTCA TCGATGTCTC CGTATGCCGG TACGTTTCCT ATATTTCTAG ATTTTCAAGT 90477 |||||||||| |||||||||| ||||||||| AACGCAGTCA TCGATGTCTC CGTATGCCG. .......... .......... .......... 290 GATAAGCTTA ATACTCCCTT CGTTCACTTT TTAAGTGTCA TATTTAGCAT AAGTCAATTT 90417 .......... .......... .......... .......... .......... .......... 290 GATTAATATT CGGAGATAAG CTGAATTAGA TTATTTCAAT ATATTAAATT TGTATTTAGA 90357 .......... .......... .......... .......... .......... .......... 290 TATTCAAAAC ATACAAGTTG CAATACTTTG ATGAAATTCC ATCTTAACTT ATTGGTAAAA 90297 .......... .......... .......... .......... .......... .......... 290 GTTCATATGG TTTGACTTTG AGAAGCAAAC ATGACAAATA AAAGTGAACG GAGAACGGAA 90237 .......... .......... .......... .......... .......... .......... 290 CCCTCGGAAG AGTACTTCTT TTTTCATGAT TGTTATGGTC AGAGTTTCAC TTGTCTGATG 90177 .......... .......... .......... .......... .......... .......... 290 CTTTGATTTT GAATGTTTTG GAAGGTTCTA TGTATCATGG TTCTCCACTT CTGCTCTCGG 90117 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTCTA TGTATCATGG TTCTCCACTT CTGCTCTCGG 326 TTCTCGGTCC GCTTACAATG AAGAAGTAAA ATATTTAGCT TCAGCTAAGC ATTTGTTCAT 90057 |||||||||| |||||||||| ||||| TTCTCGGTCC GCTTACAATG AAGAA..... .......... .......... .......... 351 ACGTTCACGC TCTGTTGTTG ACTTTTTCCT TTTATTGTGA CTTATTTTGT TTGTTCTTGA 89997 .......... .......... .......... .......... .......... .......... 351 TGTTAGAATT GAAGGACAGC CTTATCATCT TCTATGCAGG TATTATCTCT TTCTTGCTTT 89937 |||| |||||||||| |||||||||| ||||||||| ......AATT GAAGGACAGC CTTATCATCT TCTATGCAG. .......... .......... 384 CCACAAAAAT AGAAATACTC ATTTAAGGCA TATATATCGG TGTGGATATA TAATTAAGCT 89877 .......... .......... .......... .......... .......... .......... 384 TCGCACTCGT TTAGTGATAA CTTTATACAT CATTGATTTT GGAAAAAACA CTTAAAGAGC 89817 .......... .......... .......... .......... .......... .......... 384 TTCTTACTAA CTCATATACC GAAAAAAATG ATTGGTTACT ATAGAATCTT TATGGCTGCA 89757 .......... .......... .......... .......... .......... .......... 384 TCATATTAAA GATCATACAG TGATTATCTT GTGAATGGGT TCGTTAATGT TTTTCTAAGG 89697 .......... .......... .......... .......... .......... .......... 384 AACTTCAGTT AATGGCATTT TCTTTTATCC TTAATTCTAT ATTCATTGTC CCTAGCTGTT 89637 .......... .......... .......... .......... .......... .......... 384 ACTATGTCAA TTAAATGTGG TGAGGAGTAT AAGAAGCGCA CGGAGATGGA AGGGTGATGA 89577 .......... .......... .......... .......... .......... .......... 384 GCATTACCAT GTTGTACATA TAATTAACTA AGTGAAAGCA TTCAGTGTAA ACGCTTAACT 89517 .......... .......... .......... .......... .......... .......... 384 CTTTCGAGAA GATCCAAGTA AGAGTAATGA TTCTGACTTC TAAGTAGCTT TGTATACCTG 89457 .......... .......... .......... .......... .......... .......... 384 CACTCTCAAG AAGGATGGTT GGTTGACTTC CTTGAAACTT CGGGGAGCTG TTTGTAAATT 89397 .......... .......... .......... .......... .......... .......... 384 ATAACAAAAT CTTGTTTGCT GTGGTTCTTG TTATTTCCTC AGAAGAACTG ATTAAAGCAC 89337 .......... .......... .......... .......... .......... .......... 384 AAAAGTTGGT TTGCTGCATT ATCTGCCTCC ATCATCATCA CTTGATAGCA CTTAATTATT 89277 .......... .......... .......... .......... .......... .......... 384 TCTTTCTTTA CCTCCATATT TTCTTTTAAA TAGAGAAGTT CCAGACTAGG TGTGTGGGGT 89217 .......... .......... .......... .......... .......... .......... 384 GGGGTGGCTG AATGTGCTTT AGTAGTATGA TGATGAAAGG GTATTATTGA GTATGGTTAT 89157 .......... .......... .......... .......... .......... .......... 384 CAAAAAAAAT AAGTTTCTTA GATTGTACAG AGAGTTTTCC TATGGAAAAA TTAGACTTAT 89097 .......... .......... .......... .......... .......... .......... 384 TGGACAAACC AAATAAACAA GACACTTAGC CTGAGACAGA GGTCATACTG CTTGAAACGA 89037 .......... .......... .......... .......... .......... .......... 384 GTTACCTGCA TGTAACATGT TTCCATGTTT GCATTACTTC AATGCTAAAT AATATTTTGT 88977 .......... .......... .......... .......... .......... .......... 384 CCTGTTAATC TTGCCTGAGA CTATAAAATT TGCAGATAGA AAAGATTTCA TGTTGAGTTT 88917 .......... .......... .......... .......... .......... .......... 384 TATCTGTTAC TTGCTCATGC AGCATTATTT CTGAGTAGCT CTTTCAAAAT TATGAAGTCA 88857 .......... .......... .......... .......... .......... .......... 384 CATGGACATT CAACCAATTT TTGGATATAG TTTGGTTTCT GTGATTGCAG ATTTCATCTC 88797 |||||||||| .......... .......... .......... .......... .......... ATTTCATCTC 394 TGCCATGCTA ATCCGGGCAA CTGGCCTTAA ACTTCGCATG GCATATTGTG AGAGATTAAA 88737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCATGCTA ATCCGGGCAA CTGGCCTTAA ACTTCGCATG GCATATTGTG AGAGATTAAA 454 ATCGCTGGGT TTGGGGAAGC TCTTTGAAAT TTCTGGTGAA TATTCAGCTT TAATGTCGAA 88677 |||||||||| |||||||||| |||||||||| ||||| ATCGCTGGGT TTGGGGAAGC TCTTTGAAAT TTCTG..... .......... .......... 489 ATTTATTTGC TTCTTCACTA GTTAATGATG CAATAACCCC TTGTTTCAGA GATTCTACCA 88617 | |||||||||| .......... .......... .......... .......... .........A GATTCTACCA 500 TCGGAGGACA TTGCAGCTCT TGTGTACTTG TGGAACCCTT TAACCATAGT CACATGTGTG 88557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGAGGACA TTGCAGCTCT TGTGTACTTG TGGAACCCTT TAACCATAGT CACATGTGTG 560 GGTTTCAATA CAACCCCTGT GGAAAATCTT TTTATTATCT TGTCACTTTA TGGAGCCTGC 88497 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTCAATA CAACCCCTGT GGAAAATCTT TTTATTATCT TGTCACTTTA TGGAGCCTGC 620 ATCCGTAAGA AGTCAATAAT CCTTTTTATA TGTTAGTGAT TTTTTTCTTT TCTTCTTTTT 88437 |||||||||| |||||||||| |||||||||| | ATCCGTAAGA AGTCAATAAT CCTTTTTATA T......... .......... .......... 651 ATATAGTTTA CTCGCCACTC CATTTATCTT TATGCTTTTA TTGAAGGGGA AACTAGGCAT 88377 .......... .......... .......... .......... .......... .......... 651 ATTTGTCCCT TCCTTCTTGG TGCTCTTGAT AGGACATGCT CTTTGATTTT CACTTGTTGT 88317 .......... .......... .......... .......... .......... .......... 651 AGTGAATATA GCTTTTCGTT TTCCTTTTCA AAAAGAGAAT TTCTTATGGT GCTTGTATAT 88257 .......... .......... .......... .......... .......... .......... 651 GAACTGATTA ATTTACTCGT TTGTGTACAG GAGTAGCCCC ATTGGCAGCT TTTGGGTGGG 88197 |||||||||| |||||||||| |||||||||| .......... .......... .......... GAGTAGCCCC ATTGGCAGCT TTTGGGTGGG 681 TTGTAGCATC TCATTTGTCT CTCTATCC 88169 |||||||||| |||||||||| |||||||| TTGTAGCATC TCATTTGTCT CTCTATCC 709 hqPGS_C08HBa0197J17.1-_SGN-E332311+ (90896 90655,90555 90508,90152 90092,89990 89958,88806 88702,88627 88466,88226 88169) ******************************************************************************** EST sequence 39 +strand 522 n (File: SGN-E299249+) 1 GGACATCAAT AGAGTACATC CAGCACCTGT TTCTGCTGCT CCACACGAGG ATGATATGGA 61 AATAGATGAT CCGATTACAG AGGAATTTCA CAGACCTCCC TTTTCAGTTT TTTCCTCTTC 121 TAGAACTCCA AGTGCTTTCT CCCTTCTTGA TCCTAGTTTC ACTCGAAGTA TGTTTGACAC 181 CGATCTTACT AGCCGTGCTC CGTTTGTTTC ACATCCAAGA CAAGTAAGAG AGATCCCTAT 241 TGAGGTGAAG GATGGGGATG GACAATCTGG TCATTCTAGA AATGCTCCTG TTATTGAGGA 301 TGTTACAGAC GCTGACCAGA CTCAAGGCCC AGAAACTCGT GGGACTGTCA TAATTGAGGA 361 GGACGATGAC GATGATGAAG TAATTCCAGG TCCCCTGGCA ACACGTGCTG TCAGGCGTGA 421 TAGAACAAAT GATGATATCT TTGGTGGGGA CTCTACAGCA GTATTCTCAG GACCAAGTGC 481 TCCTGGTGGT GATGTCTTAC CAGACTATGC CAATGATATT GA Predicted gene structure (within gDNA segment 95781 to 97602): Exon 1 96309 96320 ( 12 n); cDNA 1 12 ( 12 n); score: 1.000 Intron 1 96321 96482 ( 162 n); Pd: 0.963 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 96483 96992 ( 510 n); cDNA 13 522 ( 510 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E299249+ 1.000 522 1.000 C PGS_C08HBa0197J17.1+_SGN-E299249+ (96309 96320,96483 96992) Alignment (genomic DNA sequence = upper lines): GGACATCAAT AGGTTAGTAA TATATGTCCT TGGTATCATT AGTACATTGT CCATTGGCTC 96368 |||||||||| || GGACATCAAT AG........ .......... .......... .......... .......... 12 CCCCATTGTG CTTGTTTGAT AGCTGATTAT TTCTTCTTCT TCCTTTTTTA TATTTTGTCG 96428 .......... .......... .......... .......... .......... .......... 12 GAAGCTATAA TGATCTTACT TACTGTCAGT TGCTGATTGT TTCTAATTAT GCAGAGTACA 96488 |||||| .......... .......... .......... .......... .......... ....AGTACA 18 TCCAGCACCT GTTTCTGCTG CTCCACACGA GGATGATATG GAAATAGATG ATCCGATTAC 96548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGCACCT GTTTCTGCTG CTCCACACGA GGATGATATG GAAATAGATG ATCCGATTAC 78 AGAGGAATTT CACAGACCTC CCTTTTCAGT TTTTTCCTCT TCTAGAACTC CAAGTGCTTT 96608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAATTT CACAGACCTC CCTTTTCAGT TTTTTCCTCT TCTAGAACTC CAAGTGCTTT 138 CTCCCTTCTT GATCCTAGTT TCACTCGAAG TATGTTTGAC ACCGATCTTA CTAGCCGTGC 96668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCCTTCTT GATCCTAGTT TCACTCGAAG TATGTTTGAC ACCGATCTTA CTAGCCGTGC 198 TCCGTTTGTT TCACATCCAA GACAAGTAAG AGAGATCCCT ATTGAGGTGA AGGATGGGGA 96728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGTTTGTT TCACATCCAA GACAAGTAAG AGAGATCCCT ATTGAGGTGA AGGATGGGGA 258 TGGACAATCT GGTCATTCTA GAAATGCTCC TGTTATTGAG GATGTTACAG ACGCTGACCA 96788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACAATCT GGTCATTCTA GAAATGCTCC TGTTATTGAG GATGTTACAG ACGCTGACCA 318 GACTCAAGGC CCAGAAACTC GTGGGACTGT CATAATTGAG GAGGACGATG ACGATGATGA 96848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCAAGGC CCAGAAACTC GTGGGACTGT CATAATTGAG GAGGACGATG ACGATGATGA 378 AGTAATTCCA GGTCCCCTGG CAACACGTGC TGTCAGGCGT GATAGAACAA ATGATGATAT 96908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAATTCCA GGTCCCCTGG CAACACGTGC TGTCAGGCGT GATAGAACAA ATGATGATAT 438 CTTTGGTGGG GACTCTACAG CAGTATTCTC AGGACCAAGT GCTCCTGGTG GTGATGTCTT 96968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGTGGG GACTCTACAG CAGTATTCTC AGGACCAAGT GCTCCTGGTG GTGATGTCTT 498 ACCAGACTAT GCCAATGATA TTGA 96992 |||||||||| |||||||||| |||| ACCAGACTAT GCCAATGATA TTGA 522 hqPGS_C08HBa0197J17.1+_SGN-E299249+ (96309 96320,96483 96992) ******************************************************************************** EST sequence 46 +strand 813 n (File: SGN-E543384+) 1 GGAGTTCATC CATCCAAGAT GAGGCTGAAG ATTTAGAAGA GGAACCACTG GTTTGGCGCA 61 GAAGAAAACC TATATCTTCA GGTTCAGAAA CAGCTCAGGA TGTCGAAGAA CGTGTTGTTA 121 GCCCATTATC AAGTCCTCGA CAGAATCTTA ATCACTCCCC AAGAAACGGT GCTGACTTCC 181 AGTCTGATGA GTGGGGGGGC ATGTCATCCC TGGAGCATGA TGAAGCTGTC ATGCTTGAAG 241 CTGCAATATT TGGTGGAATA CCTGAGGGTA CTGGATACCG ATTGCCATCT GCACCTCGTC 301 AGCCTATTCA GAATGGTGCT GATGGACCTA TGGGCCCCTA TCAATGGCGC ATGCCTCGTG 361 CCCCATCTCC GTCTCTTGTG GCACAGCGTT TACTTCGGGA ACAGCAGGAT GATGAATATC 421 ATGCTGCATT GCAAGCTGAT AGAGAAAAGG AATTGAAGGC GAAGCAAGAA GCTGAAGCTG 481 CACTTGAAGA GAAGAGACTG GAGGAGGAGG AATTACGAAG GAAAGCAGAG GAGGAAAAGG 541 AAATGGAGAG ACAACTAGCA GCAAAAGAAG CTTCCCTTCC TCAGGAGCCC ACAGCAGATA 601 ATGAGAATGC TGTGAATCTC GTTGTGCGTA TGCCTGATGG CAGCCGCAGA GGCCGGCGCT 661 TTCTCAAATC TGATAGATTA CAGTCCCTTT TCGATTACAT TGATATCGGC AGAGTGATCA 721 AGCCCGGCAC ATATAGATTG GTAAGACCTT ACCCAAGGCG TGCTTTCAGT GACGGAGAGA 781 GTACTGTGTC TCTGGACGAA CTGGGGTTGA CCA Predicted gene structure (within gDNA segment 97038 to 100252): Exon 1 97638 97828 ( 191 n); cDNA 1 191 ( 191 n); score: 1.000 Intron 1 97829 97931 ( 103 n); Pd: 0.996 (s: 1.00), Pa: 0.911 (s: 1.00) Exon 2 97932 98147 ( 216 n); cDNA 192 407 ( 216 n); score: 1.000 Intron 2 98148 98223 ( 76 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 98224 98355 ( 132 n); cDNA 408 539 ( 132 n); score: 1.000 Intron 3 98356 98783 ( 428 n); Pd: 0.000 (s: 1.00), Pa: 0.281 (s: 1.00) Exon 4 98784 98927 ( 144 n); cDNA 540 683 ( 144 n); score: 1.000 Intron 4 98928 99013 ( 86 n); Pd: 0.962 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 5 99014 99070 ( 57 n); cDNA 684 740 ( 57 n); score: 1.000 Intron 5 99071 99569 ( 499 n); Pd: 0.974 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 6 99570 99642 ( 73 n); cDNA 741 813 ( 73 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E543384+ 1.000 813 1.000 C PGS_C08HBa0197J17.1+_SGN-E543384+ (97638 97828,97932 98147,98224 98355,98784 98927,99014 99070,99570 99642) Alignment (genomic DNA sequence = upper lines): GGAGTTCATC CATCCAAGAT GAGGCTGAAG ATTTAGAAGA GGAACCACTG GTTTGGCGCA 97697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTTCATC CATCCAAGAT GAGGCTGAAG ATTTAGAAGA GGAACCACTG GTTTGGCGCA 60 GAAGAAAACC TATATCTTCA GGTTCAGAAA CAGCTCAGGA TGTCGAAGAA CGTGTTGTTA 97757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAAACC TATATCTTCA GGTTCAGAAA CAGCTCAGGA TGTCGAAGAA CGTGTTGTTA 120 GCCCATTATC AAGTCCTCGA CAGAATCTTA ATCACTCCCC AAGAAACGGT GCTGACTTCC 97817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCATTATC AAGTCCTCGA CAGAATCTTA ATCACTCCCC AAGAAACGGT GCTGACTTCC 180 AGTCTGATGA GGTATTTTTT TCGCTGTTTT AGTGGTAGAT CTCATCATAC ATAGTCATTT 97877 |||||||||| | AGTCTGATGA G......... .......... .......... .......... .......... 191 TGGCTTTGGA CTGTGCATAT GTTTACCCTG TACTTCCATA TGATTTCCTT TAAGTGGGGG 97937 |||||| .......... .......... .......... .......... .......... ....TGGGGG 197 GGCATGTCAT CCCTGGAGCA TGATGAAGCT GTCATGCTTG AAGCTGCAAT ATTTGGTGGA 97997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGTCAT CCCTGGAGCA TGATGAAGCT GTCATGCTTG AAGCTGCAAT ATTTGGTGGA 257 ATACCTGAGG GTACTGGATA CCGATTGCCA TCTGCACCTC GTCAGCCTAT TCAGAATGGT 98057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACCTGAGG GTACTGGATA CCGATTGCCA TCTGCACCTC GTCAGCCTAT TCAGAATGGT 317 GCTGATGGAC CTATGGGCCC CTATCAATGG CGCATGCCTC GTGCCCCATC TCCGTCTCTT 98117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGATGGAC CTATGGGCCC CTATCAATGG CGCATGCCTC GTGCCCCATC TCCGTCTCTT 377 GTGGCACAGC GTTTACTTCG GGAACAGCAG GTTAGCATTT TAAGCCCTCA GCTGCAATTA 98177 |||||||||| |||||||||| |||||||||| GTGGCACAGC GTTTACTTCG GGAACAGCAG .......... .......... .......... 407 AATTAGCTAT TACTCACCTG ATTCTGCTTC TAATATTTGT ACGTAGGATG ATGAATATCA 98237 |||| |||||||||| .......... .......... .......... .......... ......GATG ATGAATATCA 421 TGCTGCATTG CAAGCTGATA GAGAAAAGGA ATTGAAGGCG AAGCAAGAAG CTGAAGCTGC 98297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGCATTG CAAGCTGATA GAGAAAAGGA ATTGAAGGCG AAGCAAGAAG CTGAAGCTGC 481 ACTTGAAGAG AAGAGACTGG AGGAGGAGGA ATTACGAAGG AAAGCAGAGG AGGAAAAGGT 98357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACTTGAAGAG AAGAGACTGG AGGAGGAGGA ATTACGAAGG AAAGCAGAGG AGGAAAAG.. 539 ATAAAGCACC ATATCTCTGG CCTAAAAAGG GAAACAATGG GAACACTGAA ACCCGTGCAC 98417 .......... .......... .......... .......... .......... .......... 539 TTTTGTCCCT CACATATTTT ATCAGTAATG TGGATTTTTT GTCATTCAAT CTCCTTTAAT 98477 .......... .......... .......... .......... .......... .......... 539 TATTTGTTTT TACATCATCA TTGTTCTTCA ACACGATTTT CATTTTAGTT GGGTGATATG 98537 .......... .......... .......... .......... .......... .......... 539 CTCCCAGCCT TTTTTTTGTT TGTACATGTC ATAGGGTGTT TGTACATGCA CGCACAAAAA 98597 .......... .......... .......... .......... .......... .......... 539 TGGTTTATCC TTTAGGTGGT AAAAAATTCA TTTCTCCTTC ACTGTGATTG TTATTAAATT 98657 .......... .......... .......... .......... .......... .......... 539 CGAAGGTATT GGGAAACCCA TATGTCATCT TTGTAAAGGT ATTGGGAAAT CCATATGTCA 98717 .......... .......... .......... .......... .......... .......... 539 TCTCTGTAGT GAGTAATGTC TAGATAATCC AATGGCTTTA GAATCCCTGA CTCAGTTATT 98777 .......... .......... .......... .......... .......... .......... 539 GATCAGGAAA TGGAGAGACA ACTAGCAGCA AAAGAAGCTT CCCTTCCTCA GGAGCCCACA 98837 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAAA TGGAGAGACA ACTAGCAGCA AAAGAAGCTT CCCTTCCTCA GGAGCCCACA 593 GCAGATAATG AGAATGCTGT GAATCTCGTT GTGCGTATGC CTGATGGCAG CCGCAGAGGC 98897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGATAATG AGAATGCTGT GAATCTCGTT GTGCGTATGC CTGATGGCAG CCGCAGAGGC 653 CGGCGCTTTC TCAAATCTGA TAGATTACAG GTATATTGGT GTTGAGGTGA CATGATTACT 98957 |||||||||| |||||||||| |||||||||| CGGCGCTTTC TCAAATCTGA TAGATTACAG .......... .......... .......... 683 GCAGATTCTA TGGTATATAT TATGAATAAT TAACTGGATC AATGTGTGCT TCGCAGTCCC 99017 |||| .......... .......... .......... .......... .......... ......TCCC 687 TTTTCGATTA CATTGATATC GGCAGAGTGA TCAAGCCCGG CACATATAGA TTGGTAACTC 99077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TTTTCGATTA CATTGATATC GGCAGAGTGA TCAAGCCCGG CACATATAGA TTG....... 740 TCTTTTAACT TTAAGAGTGG TATTTTCCTA TTTGTTGGGG TTTGGGAACT TTGGATAATA 99137 .......... .......... .......... .......... .......... .......... 740 TATGTTTCTA AACAAATGCT CCTCAATTTG TTGCTCAAGA GCTGTTTCAA CATTCAAAAT 99197 .......... .......... .......... .......... .......... .......... 740 TGTTGGGAAC TTTCACTTTG ACAGTAATTG TGTTTTGCGA AATAATTGTG TTGTAATGAG 99257 .......... .......... .......... .......... .......... .......... 740 TTCATACACG TGTTAGACTG GTTATGTACT TCATTTTTCT TGGTTTAGAT AGTGTGGGTG 99317 .......... .......... .......... .......... .......... .......... 740 GGTGGATGTA GCCTAGTGGT CAAAGATGAA GCGGGTTGAG AACCACGAGT TGGTTCAAAT 99377 .......... .......... .......... .......... .......... .......... 740 CCCAATGAAG GTAAAGACAA CAGGTAATTA TTCTTGGTGG ACAGATTACC TGGTAATTGT 99437 .......... .......... .......... .......... .......... .......... 740 ACTGGTAGGT GGTAACAGGG TATCCCGCGA AATTAGTCGT GTTGCTTGCA GTTCGTCTGT 99497 .......... .......... .......... .......... .......... .......... 740 GTTGGACACC ACAGCTATTA AAAAGAGAAA CTGATGTTGA ATAATTGCTA ATTCAATGTC 99557 .......... .......... .......... .......... .......... .......... 740 TACTACATGC AGGTAAGACC TTACCCAAGG CGTGCTTTCA GTGACGGAGA GAGTACTGTG 99617 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTAAGACC TTACCCAAGG CGTGCTTTCA GTGACGGAGA GAGTACTGTG 788 TCTCTGGACG AACTGGGGTT GACCA 99642 |||||||||| |||||||||| ||||| TCTCTGGACG AACTGGGGTT GACCA 813 hqPGS_C08HBa0197J17.1+_SGN-E543384+ (97638 97828,97932 98147,98224 98355,98784 98927,99014 99070,99570 99642) ******************************************************************************** EST sequence 21 +strand 637 n (File: SGN-E304084+) 1 GAGTTCATTC ATCCAAGATG AGGCTGAAGA TTTAGAAGAG GAACCACTGG TTTGGCGCAG 61 AAGAAAACCT ATATCTTCAG GTTCAGAAAC AGCTCAGGAT GTCGAAGAAC GTGTTGTTAG 121 CCCATTATCA AGTCCTCGAC AGAATCTTAA TCACTCCCCA AGAAACGGTG CTGACTTCCA 181 GTCTGATGAG TGGGGGGGCA TGTCATCCCT GGAGCATGAT GAAGCTGTCA TGCTTGAAGC 241 TGCAATATTT GGTGGAATAC CTGAGGGTAC TGGATACCGA TTGCCATCTG CACCTCGTCA 301 GNCTATTCAG AATGGTGCTG ATGGACCTAT GGGCCCCTAT CAATGGCGCA TGCCTCGTGC 361 CCCATCTCCG TCTCTTGTGG CACAGCGTTT ACTTCGGGAA CAGCAGGATG ATGAATATCA 421 TGCTGCATTG CAAGCTGATA GAGAAAAGGA ATTGAAGGCG AAGCAAGAAG CTGAAGCTGC 481 ACTTGAAGAG AAGAGACTGG AGGAGGAGGA ATTACGAAGG AAAGCAGAGG AGGAAAAGGA 541 AATGGAGAGA CAACTAGCAG CAAAAGAAGC TTCCCTTCCT CAGGAGCCCA CAGCAGATAA 601 TGAGAATGCT GTGAATCTCG TTGTGCGTAT GCCTGAT Predicted gene structure (within gDNA segment 96958 to 99492): Exon 1 97639 97828 ( 190 n); cDNA 1 190 ( 190 n); score: 0.995 Intron 1 97829 97931 ( 103 n); Pd: 0.996 (s: 1.00), Pa: 0.911 (s: 1.00) Exon 2 97932 98147 ( 216 n); cDNA 191 406 ( 216 n); score: 0.995 Intron 2 98148 98223 ( 76 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 98224 98355 ( 132 n); cDNA 407 538 ( 132 n); score: 1.000 Intron 3 98356 98783 ( 428 n); Pd: 0.000 (s: 1.00), Pa: 0.281 (s: 1.00) Exon 4 98784 98882 ( 99 n); cDNA 539 637 ( 99 n); score: 1.000 MATCH C08HBa0197J17.1+ SGN-E304084+ 0.997 637 1.000 C PGS_C08HBa0197J17.1+_SGN-E304084+ (97639 97828,97932 98147,98224 98355,98784 98882) Alignment (genomic DNA sequence = upper lines): GAGTTCATCC ATCCAAGATG AGGCTGAAGA TTTAGAAGAG GAACCACTGG TTTGGCGCAG 97698 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTCATTC ATCCAAGATG AGGCTGAAGA TTTAGAAGAG GAACCACTGG TTTGGCGCAG 60 AAGAAAACCT ATATCTTCAG GTTCAGAAAC AGCTCAGGAT GTCGAAGAAC GTGTTGTTAG 97758 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAACCT ATATCTTCAG GTTCAGAAAC AGCTCAGGAT GTCGAAGAAC GTGTTGTTAG 120 CCCATTATCA AGTCCTCGAC AGAATCTTAA TCACTCCCCA AGAAACGGTG CTGACTTCCA 97818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATTATCA AGTCCTCGAC AGAATCTTAA TCACTCCCCA AGAAACGGTG CTGACTTCCA 180 GTCTGATGAG GTATTTTTTT CGCTGTTTTA GTGGTAGATC TCATCATACA TAGTCATTTT 97878 |||||||||| GTCTGATGAG .......... .......... .......... .......... .......... 190 GGCTTTGGAC TGTGCATATG TTTACCCTGT ACTTCCATAT GATTTCCTTT AAGTGGGGGG 97938 ||||||| .......... .......... .......... .......... .......... ...TGGGGGG 197 GCATGTCATC CCTGGAGCAT GATGAAGCTG TCATGCTTGA AGCTGCAATA TTTGGTGGAA 97998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTCATC CCTGGAGCAT GATGAAGCTG TCATGCTTGA AGCTGCAATA TTTGGTGGAA 257 TACCTGAGGG TACTGGATAC CGATTGCCAT CTGCACCTCG TCAGCCTATT CAGAATGGTG 98058 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TACCTGAGGG TACTGGATAC CGATTGCCAT CTGCACCTCG TCAGNCTATT CAGAATGGTG 317 CTGATGGACC TATGGGCCCC TATCAATGGC GCATGCCTCG TGCCCCATCT CCGTCTCTTG 98118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATGGACC TATGGGCCCC TATCAATGGC GCATGCCTCG TGCCCCATCT CCGTCTCTTG 377 TGGCACAGCG TTTACTTCGG GAACAGCAGG TTAGCATTTT AAGCCCTCAG CTGCAATTAA 98178 |||||||||| |||||||||| ||||||||| TGGCACAGCG TTTACTTCGG GAACAGCAG. .......... .......... .......... 406 ATTAGCTATT ACTCACCTGA TTCTGCTTCT AATATTTGTA CGTAGGATGA TGAATATCAT 98238 ||||| |||||||||| .......... .......... .......... .......... .....GATGA TGAATATCAT 421 GCTGCATTGC AAGCTGATAG AGAAAAGGAA TTGAAGGCGA AGCAAGAAGC TGAAGCTGCA 98298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCATTGC AAGCTGATAG AGAAAAGGAA TTGAAGGCGA AGCAAGAAGC TGAAGCTGCA 481 CTTGAAGAGA AGAGACTGGA GGAGGAGGAA TTACGAAGGA AAGCAGAGGA GGAAAAGGTA 98358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTTGAAGAGA AGAGACTGGA GGAGGAGGAA TTACGAAGGA AAGCAGAGGA GGAAAAG... 538 TAAAGCACCA TATCTCTGGC CTAAAAAGGG AAACAATGGG AACACTGAAA CCCGTGCACT 98418 .......... .......... .......... .......... .......... .......... 538 TTTGTCCCTC ACATATTTTA TCAGTAATGT GGATTTTTTG TCATTCAATC TCCTTTAATT 98478 .......... .......... .......... .......... .......... .......... 538 ATTTGTTTTT ACATCATCAT TGTTCTTCAA CACGATTTTC ATTTTAGTTG GGTGATATGC 98538 .......... .......... .......... .......... .......... .......... 538 TCCCAGCCTT TTTTTTGTTT GTACATGTCA TAGGGTGTTT GTACATGCAC GCACAAAAAT 98598 .......... .......... .......... .......... .......... .......... 538 GGTTTATCCT TTAGGTGGTA AAAAATTCAT TTCTCCTTCA CTGTGATTGT TATTAAATTC 98658 .......... .......... .......... .......... .......... .......... 538 GAAGGTATTG GGAAACCCAT ATGTCATCTT TGTAAAGGTA TTGGGAAATC CATATGTCAT 98718 .......... .......... .......... .......... .......... .......... 538 CTCTGTAGTG AGTAATGTCT AGATAATCCA ATGGCTTTAG AATCCCTGAC TCAGTTATTG 98778 .......... .......... .......... .......... .......... .......... 538 ATCAGGAAAT GGAGAGACAA CTAGCAGCAA AAGAAGCTTC CCTTCCTCAG GAGCCCACAG 98838 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GAAAT GGAGAGACAA CTAGCAGCAA AAGAAGCTTC CCTTCCTCAG GAGCCCACAG 593 CAGATAATGA GAATGCTGTG AATCTCGTTG TGCGTATGCC TGAT 98882 |||||||||| |||||||||| |||||||||| |||||||||| |||| CAGATAATGA GAATGCTGTG AATCTCGTTG TGCGTATGCC TGAT 637 hqPGS_C08HBa0197J17.1+_SGN-E304084+ (97639 97828,97932 98147,98224 98355,98784 98882) ******************************************************************************** EST sequence 115 -strand 870 n (File: SGN-E543383-) 1 CCCTGGAGCA TGATGAAGCT GTCATGTTGA AAGCTGCAAT ATTTGGTGAA TACNTGAGGG 61 TACCTGATAC CCGATTGCCA TCTGCACTTC GTCAGCCTAT TCAGAATGGT GCTGATGGAC 121 CTATGGGCCC CTATCAATGG CGCATGCCTC GTGCCCCATC TCCGTCTCTT GTGGCACAGC 181 GTTTACTTCG GGAACAGCAG GATGATGAAT ATCATGCTGC ATTGCAAGCT GATAGAGAAA 241 AGGAATTGAA GGCGAAGCAA GAAGCTGAAG CTGCACTTGA AGAGAAGAGA CTGGAGGAGG 301 AGGAATTACG AAGGAAAGCA GAGGAGGAAA AGGAAATGGA GAGACAACTA GCAGCAAAAG 361 AAGCTTCCCT TCCTCAGGAG CCCACAGCAG ATAATGAGAA TGCTGTGAAT CTCGTTGTGC 421 GTATGCCTGA TGGCAGCCGC AGAGGCCGGC GCTTTCTCAA ATCTGATAGA TTACAGTCCC 481 TTTTCGATTA CATTGATATC GGCAGAGTGA TCAAGCCCGG CACATATAGA TTGGTAAGAC 541 CTTACCCAAG GCGTGCTTTC AGTGACGGAG AGAGTACTGT GTCTCTGGAC GAACTGGGGT 601 TGACCAGCAA ACAAGAAGCC TTGTTTCTGG AGTCGATATA AGTCATTCAC GTTGTAAAGT 661 AGTTTCAGAT ATTTCCTCAA AAACATAGAT TTATACATAC ATACGTGAAA ATGGTGTTCA 721 TGGGTTGGTT TATTTTGGTT GGTAAACATC GCTGCATATT TATCTGGTCG CTAGGGAGAA 781 TGCCATTGAT GATCATGGTG GGTGAGGAGT ATTCCAACGA TTTATGGTGC TTTATATGTG 841 GAATTAAATC ATTTGCTTTT AAAAAAAAAA Predicted gene structure (within gDNA segment 96708 to 100596): Exon 1 97948 98147 ( 200 n); cDNA 1 200 ( 200 n); score: 0.947 Intron 1 98148 98223 ( 76 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 98224 98355 ( 132 n); cDNA 201 332 ( 132 n); score: 1.000 Intron 2 98356 98783 ( 428 n); Pd: 0.000 (s: 1.00), Pa: 0.281 (s: 1.00) Exon 3 98784 98927 ( 144 n); cDNA 333 476 ( 144 n); score: 1.000 Intron 3 98928 99013 ( 86 n); Pd: 0.962 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 99014 99070 ( 57 n); cDNA 477 533 ( 57 n); score: 1.000 Intron 4 99071 99569 ( 499 n); Pd: 0.974 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 5 99570 99900 ( 331 n); cDNA 534 864 ( 331 n); score: 0.994 Intron 5 99901 100370 ( 470 n); Pd: 0.000 (s: 0.96), Pa: 0.770 (s: 0) Exon 6 100371 100376 ( 6 n); cDNA 865 870 ( 6 n); score: 0.833 MATCH C08HBa0197J17.1+ SGN-E543383- 0.986 870 1.000 C PGS_C08HBa0197J17.1+_SGN-E543383- (97948 98147,98224 98355,98784 98927,99014 99070,99570 99900,100371 100376) Alignment (genomic DNA sequence = upper lines): CCCTGGAGCA TGATGAAGCT GTCATGCTTG AAGCTGCAAT ATTTGGTGGA ATACCTGAGG 98007 |||||||||| |||||||||| |||||| | |||||||||| ||||||| || |||| ||||| CCCTGGAGCA TGATGAAGCT GTCATGTTGA AAGCTGCAAT ATTTGGT-GA ATACNTGAGG 59 GTACTGGATA -CCGATTGCC ATCTGCACCT CGTCAGCCTA TTCAGAATGG TGCTGATGGA 98066 |||| |||| ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GTACCTGATA CCCGATTGCC ATCTGCACTT CGTCAGCCTA TTCAGAATGG TGCTGATGGA 119 CCTATGGGCC CCTATCAATG GCGCATGCCT CGTGCCCCAT CTCCGTCTCT TGTGGCACAG 98126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATGGGCC CCTATCAATG GCGCATGCCT CGTGCCCCAT CTCCGTCTCT TGTGGCACAG 179 CGTTTACTTC GGGAACAGCA GGTTAGCATT TTAAGCCCTC AGCTGCAATT AAATTAGCTA 98186 |||||||||| |||||||||| | CGTTTACTTC GGGAACAGCA G......... .......... .......... .......... 200 TTACTCACCT GATTCTGCTT CTAATATTTG TACGTAGGAT GATGAATATC ATGCTGCATT 98246 ||| |||||||||| |||||||||| .......... .......... .......... .......GAT GATGAATATC ATGCTGCATT 223 GCAAGCTGAT AGAGAAAAGG AATTGAAGGC GAAGCAAGAA GCTGAAGCTG CACTTGAAGA 98306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGCTGAT AGAGAAAAGG AATTGAAGGC GAAGCAAGAA GCTGAAGCTG CACTTGAAGA 283 GAAGAGACTG GAGGAGGAGG AATTACGAAG GAAAGCAGAG GAGGAAAAGG TATAAAGCAC 98366 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGAGACTG GAGGAGGAGG AATTACGAAG GAAAGCAGAG GAGGAAAAG. .......... 332 CATATCTCTG GCCTAAAAAG GGAAACAATG GGAACACTGA AACCCGTGCA CTTTTGTCCC 98426 .......... .......... .......... .......... .......... .......... 332 TCACATATTT TATCAGTAAT GTGGATTTTT TGTCATTCAA TCTCCTTTAA TTATTTGTTT 98486 .......... .......... .......... .......... .......... .......... 332 TTACATCATC ATTGTTCTTC AACACGATTT TCATTTTAGT TGGGTGATAT GCTCCCAGCC 98546 .......... .......... .......... .......... .......... .......... 332 TTTTTTTTGT TTGTACATGT CATAGGGTGT TTGTACATGC ACGCACAAAA ATGGTTTATC 98606 .......... .......... .......... .......... .......... .......... 332 CTTTAGGTGG TAAAAAATTC ATTTCTCCTT CACTGTGATT GTTATTAAAT TCGAAGGTAT 98666 .......... .......... .......... .......... .......... .......... 332 TGGGAAACCC ATATGTCATC TTTGTAAAGG TATTGGGAAA TCCATATGTC ATCTCTGTAG 98726 .......... .......... .......... .......... .......... .......... 332 TGAGTAATGT CTAGATAATC CAATGGCTTT AGAATCCCTG ACTCAGTTAT TGATCAGGAA 98786 ||| .......... .......... .......... .......... .......... .......GAA 335 ATGGAGAGAC AACTAGCAGC AAAAGAAGCT TCCCTTCCTC AGGAGCCCAC AGCAGATAAT 98846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAGAGAC AACTAGCAGC AAAAGAAGCT TCCCTTCCTC AGGAGCCCAC AGCAGATAAT 395 GAGAATGCTG TGAATCTCGT TGTGCGTATG CCTGATGGCA GCCGCAGAGG CCGGCGCTTT 98906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATGCTG TGAATCTCGT TGTGCGTATG CCTGATGGCA GCCGCAGAGG CCGGCGCTTT 455 CTCAAATCTG ATAGATTACA GGTATATTGG TGTTGAGGTG ACATGATTAC TGCAGATTCT 98966 |||||||||| |||||||||| | CTCAAATCTG ATAGATTACA G......... .......... .......... .......... 476 ATGGTATATA TTATGAATAA TTAACTGGAT CAATGTGTGC TTCGCAGTCC CTTTTCGATT 99026 ||| |||||||||| .......... .......... .......... .......... .......TCC CTTTTCGATT 489 ACATTGATAT CGGCAGAGTG ATCAAGCCCG GCACATATAG ATTGGTAACT CTCTTTTAAC 99086 |||||||||| |||||||||| |||||||||| |||||||||| |||| ACATTGATAT CGGCAGAGTG ATCAAGCCCG GCACATATAG ATTG...... .......... 533 TTTAAGAGTG GTATTTTCCT ATTTGTTGGG GTTTGGGAAC TTTGGATAAT ATATGTTTCT 99146 .......... .......... .......... .......... .......... .......... 533 AAACAAATGC TCCTCAATTT GTTGCTCAAG AGCTGTTTCA ACATTCAAAA TTGTTGGGAA 99206 .......... .......... .......... .......... .......... .......... 533 CTTTCACTTT GACAGTAATT GTGTTTTGCG AAATAATTGT GTTGTAATGA GTTCATACAC 99266 .......... .......... .......... .......... .......... .......... 533 GTGTTAGACT GGTTATGTAC TTCATTTTTC TTGGTTTAGA TAGTGTGGGT GGGTGGATGT 99326 .......... .......... .......... .......... .......... .......... 533 AGCCTAGTGG TCAAAGATGA AGCGGGTTGA GAACCACGAG TTGGTTCAAA TCCCAATGAA 99386 .......... .......... .......... .......... .......... .......... 533 GGTAAAGACA ACAGGTAATT ATTCTTGGTG GACAGATTAC CTGGTAATTG TACTGGTAGG 99446 .......... .......... .......... .......... .......... .......... 533 TGGTAACAGG GTATCCCGCG AAATTAGTCG TGTTGCTTGC AGTTCGTCTG TGTTGGACAC 99506 .......... .......... .......... .......... .......... .......... 533 CACAGCTATT AAAAAGAGAA ACTGATGTTG AATAATTGCT AATTCAATGT CTACTACATG 99566 .......... .......... .......... .......... .......... .......... 533 CAGGTAAGAC CTTACCCAAG GCGTGCTTTC AGTGACGGAG AGAGTACTGT GTCTCTGGAC 99626 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTAAGAC CTTACCCAAG GCGTGCTTTC AGTGACGGAG AGAGTACTGT GTCTCTGGAC 590 GAACTGGGGT TGACCAGCAA ACAAGAAGCC TTGTTTCTGG AGTCGATATA AGTCATTCAC 99686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTGGGGT TGACCAGCAA ACAAGAAGCC TTGTTTCTGG AGTCGATATA AGTCATTCAC 650 GTTGTAAAGT AGTTTCAGAT ATTTCCTCAA AAACATAGAT TTATACATAC ATACGTGAAA 99746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTAAAGT AGTTTCAGAT ATTTCCTCAA AAACATAGAT TTATACATAC ATACGTGAAA 710 ATGGTGTTCA TGGGTTGGTT TATTTTGGTT GGTAAACATC GCTGCATATT TATCTGGTCG 99806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGTTCA TGGGTTGGTT TATTTTGGTT GGTAAACATC GCTGCATATT TATCTGGTCG 770 CTAGGGAGAA TGCCATTGAT GATCATGGTG GGTGAGGAGT ATTCCAACGA TTTATGGTGC 99866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGGGAGAA TGCCATTGAT GATCATGGTG GGTGAGGAGT ATTCCAACGA TTTATGGTGC 830 TTTATATGTG GAATTAAATC ATTTGCTTTT TGAATTGTCC ACAAAAATAG TATATAGCTT 99926 |||||||||| |||||||||| |||||||||| || TTTATATGTG GAATTAAATC ATTTGCTTTT AAAA...... .......... .......... 864 GTCAAATGGT TTATGTGGCA TAAGCTGGAA CTTAATGCGC ATTATGGACC GGCTTTAGAG 99986 .......... .......... .......... .......... .......... .......... 864 AAATACGAGC ATACTTCTTC TAGGTTCATT TAATTTGTTG TGTTTTAATT TATCACGTTG 100046 .......... .......... .......... .......... .......... .......... 864 CTCAACTAAA GTGATTAGTT TACTAGATTA TTCCCCTATT ACTTTCATAT CTCAATAGCG 100106 .......... .......... .......... .......... .......... .......... 864 TAGAGTTTTT TGGGAACTTC TCTTTCATCA TTTCATTTTG TGGGTTTTTT CTCTCTCCAT 100166 .......... .......... .......... .......... .......... .......... 864 TTCAAATAAA TTAAACTAGT AAAGGGGCTG TGCTTTGCGC AATCAAACGT TTCTTGTATT 100226 .......... .......... .......... .......... .......... .......... 864 TGATGTTTAA GTTAATTTTA TAATAATAAT TGATGAATAC ATTTTTAAGA TTAATTAACT 100286 .......... .......... .......... .......... .......... .......... 864 TTATCAAGGG TATAACAGGT AAAATATGAT AATTTATGCA TAGATTTTAT AAAATGACAA 100346 .......... .......... .......... .......... .......... .......... 864 GTGTTGTGGT TCAATTATTT ATAGAAAGAA 100376 ||| || .......... .......... ....AAAAAA 870 hqPGS_C08HBa0197J17.1+_SGN-E543383- (97948 98147,98224 98355,98784 98927,99014 99070,99570 99900) ******************************************************************************** EST sequence 69 -strand 358 n (File: SGN-E215631-) 1 AGTCATTCAC GTTGTAAAGT AGTTTCAGAT ATTTCCTCAA AAACATAGAT TTATACATAC 61 ATACGTGAAA ATGGTGTTCA TGGGTTGGTT TATTTTGGTT GGTAAACATC GCTGCATATT 121 TATCTGGTCG CTAGGGAGAA TGCCATTGAT GATCATGGTG GGTGAGGAGT ATTCCAACGA 181 TTTATGGTGC TTTATATGTG GAATTAAATC ATTTGCTTTT TGAATTGTCC ACAAAAATAG 241 TATATAGCTT GTCAAATGGT TTATGTGGCA TAAGCTGGAA CTTAATGCGC ATTATGGACC 301 GGCTTTAGAG AAATACGAGC ATACTTCTTC TAGGTTCATT TAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 99067 to 100769): Exon 1 99677 100009 ( 333 n); cDNA 1 333 ( 333 n); score: 1.000 PPA cDNA 342 358 MATCH C08HBa0197J17.1+ SGN-E215631- 1.000 333 0.930 C PGS_C08HBa0197J17.1+_SGN-E215631- (99677 100009) Alignment (genomic DNA sequence = upper lines): AGTCATTCAC GTTGTAAAGT AGTTTCAGAT ATTTCCTCAA AAACATAGAT TTATACATAC 99736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCATTCAC GTTGTAAAGT AGTTTCAGAT ATTTCCTCAA AAACATAGAT TTATACATAC 60 ATACGTGAAA ATGGTGTTCA TGGGTTGGTT TATTTTGGTT GGTAAACATC GCTGCATATT 99796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACGTGAAA ATGGTGTTCA TGGGTTGGTT TATTTTGGTT GGTAAACATC GCTGCATATT 120 TATCTGGTCG CTAGGGAGAA TGCCATTGAT GATCATGGTG GGTGAGGAGT ATTCCAACGA 99856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTGGTCG CTAGGGAGAA TGCCATTGAT GATCATGGTG GGTGAGGAGT ATTCCAACGA 180 TTTATGGTGC TTTATATGTG GAATTAAATC ATTTGCTTTT TGAATTGTCC ACAAAAATAG 99916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGGTGC TTTATATGTG GAATTAAATC ATTTGCTTTT TGAATTGTCC ACAAAAATAG 240 TATATAGCTT GTCAAATGGT TTATGTGGCA TAAGCTGGAA CTTAATGCGC ATTATGGACC 99976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATAGCTT GTCAAATGGT TTATGTGGCA TAAGCTGGAA CTTAATGCGC ATTATGGACC 300 GGCTTTAGAG AAATACGAGC ATACTTCTTC TAG 100009 |||||||||| |||||||||| |||||||||| ||| GGCTTTAGAG AAATACGAGC ATACTTCTTC TAG 333 hqPGS_C08HBa0197J17.1+_SGN-E215631- (99677 100009) ******************************************************************************** EST sequence 70 -strand 285 n (File: SGN-E215915-) 1 GTGTTCATGG GTTGGTTTAT TTTGGTTGGT AAACATCGCT GCATATTTAT CTGGTCGCTA 61 GGGAGAATGC CATTGATGAT CATGGTGGGT GAGGAGTATT CCAACGATTT ATGGTGCTTT 121 ATATGTGGAA TTAAATCATT TGCTTTTTGA ATTGTCCACA AAAATAGTAT ATAGCTTGTC 181 AAATGGTTTA TGTGGCATAA GCTGGAACTT AATGCGCATT ATGGACCGGC TTTAGAGAAA 241 TACGAGCATA CTTCTTCTAG GTTCATTTAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 99140 to 100769): Exon 1 99750 100009 ( 260 n); cDNA 1 260 ( 260 n); score: 1.000 PPA cDNA 269 285 MATCH C08HBa0197J17.1+ SGN-E215915- 1.000 260 0.912 C PGS_C08HBa0197J17.1+_SGN-E215915- (99750 100009) Alignment (genomic DNA sequence = upper lines): GTGTTCATGG GTTGGTTTAT TTTGGTTGGT AAACATCGCT GCATATTTAT CTGGTCGCTA 99809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTCATGG GTTGGTTTAT TTTGGTTGGT AAACATCGCT GCATATTTAT CTGGTCGCTA 60 GGGAGAATGC CATTGATGAT CATGGTGGGT GAGGAGTATT CCAACGATTT ATGGTGCTTT 99869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAATGC CATTGATGAT CATGGTGGGT GAGGAGTATT CCAACGATTT ATGGTGCTTT 120 ATATGTGGAA TTAAATCATT TGCTTTTTGA ATTGTCCACA AAAATAGTAT ATAGCTTGTC 99929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTGGAA TTAAATCATT TGCTTTTTGA ATTGTCCACA AAAATAGTAT ATAGCTTGTC 180 AAATGGTTTA TGTGGCATAA GCTGGAACTT AATGCGCATT ATGGACCGGC TTTAGAGAAA 99989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTTTA TGTGGCATAA GCTGGAACTT AATGCGCATT ATGGACCGGC TTTAGAGAAA 240 TACGAGCATA CTTCTTCTAG 100009 |||||||||| |||||||||| TACGAGCATA CTTCTTCTAG 260 hqPGS_C08HBa0197J17.1+_SGN-E215915- (99750 100009) ******************************************************************************** EST sequence 128 -strand 481 n (File: SGN-E208613-) 1 TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG AATAGAATAA 61 ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACGCCAT TCCAATGTCT 121 TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA TATCTGGTCG 181 AGTATTGTTA GCAAGATGCA CTAGTGCCCT GATTGCACCA AGATAGAGTT TCATCACCAA 241 GAAACTCATC ATCCTTCTTT TGAGATCAAA CTGAATCATC ATTTATGACA AGTGATCTCA 301 TAATCATTGG GGTACTCAAT GAATGCGATA TATCCACATA AAATTGCATC AAAATTTTTC 361 AGTGTATGTG CACTGTTAGA CAAATATTTT ATTTGTCAAA TTAACAATCT GTAGGTCAAG 421 ACAAAATTTT GTCTTACCAA GACCTTTTCA TAAAAATACA AGGACAATTA GGATCATTCT 481 T Predicted gene structure (within gDNA segment 99712 to 103337): Exon 1 102113 102593 ( 481 n); cDNA 1 481 ( 481 n); score: 0.904 MATCH C08HBa0197J17.1+ SGN-E208613- 0.904 481 1.000 C PGS_C08HBa0197J17.1+_SGN-E208613- (102113 102593) Alignment (genomic DNA sequence = upper lines): TAAATATTCT GCATCTGCGT AACCAATCAA TTTTGTCTTG GATTCCTCGG AATAGAATAA 102172 |||||| || |||||||||| ||||||||| || || ||| ||||| | || |||||||||| TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG AATAGAATAA 60 GCCCGTAACT GTGGCCCTTC GAGGATATTC AATCATGTGT TCAACACCAT TTCAATGTCC 102232 ||| | | ||| || || || ||||| || |||||| | ||| |||| | ||||||| ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACGCCAT TCCAATGTCT 120 TTTTATCGGG GAGAAACTGA ATCTTGCCAG TAAATTTACT GCAAAACAAA TATCTAGTCA 102292 |||| | ||| ||| |||||| |||||||||| || | ||||| |||||||| | ||||| ||| TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA TATCTGGTCG 180 AATATTGTTA GTAAGATGTA CTAGTGCCCT GATTGCACCA AAATAGAGTT TCATCACCAA 102352 | |||||||| | |||||| | |||||||||| |||||||||| | |||||||| |||||||||| AGTATTGTTA GCAAGATGCA CTAGTGCCCT GATTGCACCA AGATAGAGTT TCATCACCAA 240 GAAACTCATC ATCCTTCTTT TGAGATCAAA CTGAATCATC ATTTATGTTA AGTGATCTCA 102412 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| GAAACTCATC ATCCTTCTTT TGAGATCAAA CTGAATCATC ATTTATGACA AGTGATCTCA 300 TAATCATTGG GGTACTCAAT GAATGCGATT TATCCATATA AAATTGCATC AAAACTTTTC 102472 |||||||||| |||||||||| ||||||||| |||||| ||| |||||||||| |||| ||||| TAATCATTGG GGTACTCAAT GAATGCGATA TATCCACATA AAATTGCATC AAAATTTTTC 360 AGTGTATGTG CACTGTTAGA CAAATATTTC ATTTGTCAAA TTATCAATCT GTAGGTCAAG 102532 |||||||||| |||||||||| ||||||||| |||||||||| ||| |||||| |||||||||| AGTGTATGTG CACTGTTAGA CAAATATTTT ATTTGTCAAA TTAACAATCT GTAGGTCAAG 420 ACAAAATTTT GTCTTACCAA GACCTTTTCA TAAAAATACA AGGACTATTA GGGTCATTCT 102592 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| || ||||||| ACAAAATTTT GTCTTACCAA GACCTTTTCA TAAAAATACA AGGACAATTA GGATCATTCT 480 T 102593 | T 481 hqPGS_C08HBa0197J17.1+_SGN-E208613- (102113 102593) ******************************************************************************** EST sequence 124 -strand 409 n (File: SGN-E289962-) 1 AGTAAATTTA CTGCAAAACA AATATCTGGA ATAATATTGT TAGTAAGATG CACTAGTGCC 61 CTGATTGCAC CAAGATAGAG TTTCATCACC AAGAAACTCA TCATCCTTCT TTTGAGATCA 121 AACTGAATCA TCATTTATGT CAAGTAATCT CATAATCATT GGGGTACTCA ATGAATGCGA 181 TTTATTCATA TAAAATTGCA TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT 241 TCATTTGTCA AATTATCAAT CTGTAGGTCA AGGCAAAATT TTGTCTTACC AAGACCTTTT 301 CATAAAAATA CAAGGACAAT TAGGGTCATT CTTTTGTACC ATTTTTCTTC CTTGACTATT 361 TCAATCCATA TAAGAATTCT TGAAGCTTTA TTGGATAAGT TTCTTTCAA Predicted gene structure (within gDNA segment 101651 to 103395): Exon 1 102261 102669 ( 409 n); cDNA 1 409 ( 409 n); score: 0.961 MATCH C08HBa0197J17.1+ SGN-E289962- 0.961 409 1.000 C PGS_C08HBa0197J17.1+_SGN-E289962- (102261 102669) Alignment (genomic DNA sequence = upper lines): AGTAAATTTA CTGCAAAACA AATATCTAGT CAAATATTGT TAGTAAGATG TACTAGTGCC 102320 |||||||||| |||||||||| ||||||| | |||||||| |||||||||| ||||||||| AGTAAATTTA CTGCAAAACA AATATCTGGA ATAATATTGT TAGTAAGATG CACTAGTGCC 60 CTGATTGCAC CAAAATAGAG TTTCATCACC AAGAAACTCA TCATCCTTCT TTTGAGATCA 102380 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATTGCAC CAAGATAGAG TTTCATCACC AAGAAACTCA TCATCCTTCT TTTGAGATCA 120 AACTGAATCA TCATTTATGT TAAGTGATCT CATAATCATT GGGGTACTCA ATGAATGCGA 102440 |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| AACTGAATCA TCATTTATGT CAAGTAATCT CATAATCATT GGGGTACTCA ATGAATGCGA 180 TTTATCCATA TAAAATTGCA TCAAAACTTT TCAGTGTATG TGCACTGTTA GACAAATATT 102500 ||||| |||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTTATTCATA TAAAATTGCA TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT 240 TCATTTGTCA AATTATCAAT CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT 102560 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TCATTTGTCA AATTATCAAT CTGTAGGTCA AGGCAAAATT TTGTCTTACC AAGACCTTTT 300 CATAAAAATA CAAGGACTAT TAGGGTCATT CTTTTGTACT CTTTTTCTTC CTTGACTATT 102620 |||||||||| ||||||| || |||||||||| ||||||||| ||||||||| |||||||||| CATAAAAATA CAAGGACAAT TAGGGTCATT CTTTTGTACC ATTTTTCTTC CTTGACTATT 360 TCAATCCATA TAAGGATTCT TGAAGCTTTA TTGGAAAAGT TTCTTTCAA 102669 |||||||||| |||| ||||| |||||||||| ||||| |||| ||||||||| TCAATCCATA TAAGAATTCT TGAAGCTTTA TTGGATAAGT TTCTTTCAA 409 hqPGS_C08HBa0197J17.1+_SGN-E289962- (102261 102669) ******************************************************************************** EST sequence 103 -strand 677 n (File: SGN-E391540-) 1 GACAAGTGAT CTCATAATCA TTGGGGTACT CAATGAATGC GATATATCCA CATAAAATTG 61 CATCAAAATT TTTCAGTGTA TGTGCACTGT TAGACAAATA TTTTATTTGT CAAATTAACA 121 ATCTGTAGGT CAAGACAAAA TTTTGTCTTA CCAAGACCTT TTCATAAAAA TACAAGGACA 181 ATTAGGATCA TTCTTTTGTA CCCTTTTCTT CCTTGACTAT TTCAATCCAT ATAAGGATTC 241 TTGAAGCTTT ATTGAAAAAG TTTCTTTCAA ACTCTTGTAT GCTTCAGACA CCTCGATTGT 301 TTCAAGGATT TTCATATAAC CTTCATTGTC TAGCTAGACA TTACAATTAT TCATTACATG 361 CATTCAAGCT TTTCATATGT TGCCAGATCA AAACAAACCT CATTGCATCC ACCAAAGGAG 421 AAAACATCTC CAATAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGACACAAAC 481 CGTATTTGAT ATCTTACGGT TATATTATTG CATAATAATT TATTTGTACC CCACTGACAT 541 TATACCTTGA TTTATGGACT ACCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 601 ACTTGAATTG TGCATTTTAC TTGGTCAACC ATTAATCTGT CCACACTATA TGACAGATTT 661 GAATTCAAGA TCCTCGT Predicted gene structure (within gDNA segment 101762 to 103675): Exon 1 102402 103075 ( 674 n); cDNA 4 677 ( 674 n); score: 0.960 MATCH C08HBa0197J17.1+ SGN-E391540- 0.960 674 0.996 C PGS_C08HBa0197J17.1+_SGN-E391540- (102402 103075) Alignment (genomic DNA sequence = upper lines): AAGTGATCTC ATAATCATTG GGGTACTCAA TGAATGCGAT TTATCCATAT AAAATTGCAT 102461 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| AAGTGATCTC ATAATCATTG GGGTACTCAA TGAATGCGAT ATATCCACAT AAAATTGCAT 63 CAAAACTTTT CAGTGTATGT GCACTGTTAG ACAAATATTT CATTTGTCAA ATTATCAATC 102521 ||||| |||| |||||||||| |||||||||| |||||||||| ||||||||| |||| ||||| CAAAATTTTT CAGTGTATGT GCACTGTTAG ACAAATATTT TATTTGTCAA ATTAACAATC 123 TGTAGGTCAA GACAAAATTT TGTCTTACCA AGACCTTTTC ATAAAAATAC AAGGACTATT 102581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TGTAGGTCAA GACAAAATTT TGTCTTACCA AGACCTTTTC ATAAAAATAC AAGGACAATT 183 AGGGTCATTC TTTTGTACTC TTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 102641 ||| |||||| |||||||| | ||||||||| |||||||||| |||||||||| |||||||||| AGGATCATTC TTTTGTAC-C CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 242 GAAGCTTTAT TGGAAAAGTT TCTTTCAAAC TCTTATATGC TTCAGACACC TCGATTGTTT 102701 |||||||||| || ||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GAAGCTTTAT TGAAAAAGTT TCTTTCAAAC TCTTGTATGC TTCAGACACC TCGATTGTTT 302 CAAGGATTTT CATATAACCT TCATTGTCTA GCTAGACATT ACAATTATTC ATTTACATGC 102761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| CAAGGATTTT CATATAACCT TCATTGTCTA GCTAGACATT ACAATTATTC A-TTACATGC 361 ATTCAAG-TT TTCATATGTT GCCAGATCAA AACAAACCTC ATTGCATCCA CCAAAGGAGA 102820 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAAGCTT TTCATATGTT GCCAGATCAA AACAAACCTC ATTGCATCCA CCAAAGGAGA 421 AAATATCTCC AATAATGTCA GGA-TTTTGC GATAAACTTT TATGCCCCAA GGCACAAATC 102879 ||| |||||| |||||||||| ||| |||||| ||||||| || |||||||||| | |||||| | AAACATCTCC AATAATGTCA GGATTTTTGC GATAAACCTT TATGCCCCAA GACACAAACC 481 GTATTTGATA TCTTACGGTT ATACTATCGC ATAATAATTT ATTTGTACCC CACTGACAAT 102939 |||||||||| |||||||||| ||| ||| || |||||||||| |||||||||| |||||||| | GTATTTGATA TCTTACGGTT ATATTATTGC ATAATAATTT ATTTGTACCC CACTGACATT 541 ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT TCTAAGTGAA ACAAAATATA 102999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT TCTAAGTGAA ACAAAATATA 601 CTTGAATTGT GCATTTTACT AGGTCAACCA TTTATCTGTC CATACTATAT GACAGATTTG 103059 |||||||||| |||||||||| ||||||||| || ||||||| || ||||||| |||||||||| CTTGAATTGT GCATTTTACT TGGTCAACCA TTAATCTGTC CACACTATAT GACAGATTTG 661 AATTCAAGAT CCTCGT 103075 |||||||||| |||||| AATTCAAGAT CCTCGT 677 hqPGS_C08HBa0197J17.1+_SGN-E391540- (102402 103075) ******************************************************************************** EST sequence 104 -strand 582 n (File: SGN-E267707-) 1 TCCACATAAA ATTGCATCAA AATTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTTAT 61 TTGTCAAATT AACAATCTGT AGGTCAAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 121 AAAATACAAG GACAATTAGG ATCATTCTTT TGTACCCTTT TCTTCCTTGA CTATTTCAAT 181 CCATATAAGG ATTCTTGAAG CTTTATTGAA AAAGTTTCTT TCAAACTCTT GTATGCTTCA 241 GACACCTCGA TTGTTTCAAG GATTTTCATA TAACCTTCAT TGTCTAGCTA GACATTACAA 301 TTATTCATTA CATGCATTCA AGCTTTTCAT ATGTTGCCAG ATCAAAACAA ACCTCATTGC 361 ATCCACCAAA GGAGAAAACA TCTCCAATAA TGTCAGGATT TTTGCGATAA ACCTTTATGC 421 CCCAAGACAC AAACCGTATT TGATATCTTA CGGTTATATT ATTGCATAAT AATTTATTTG 481 TACCCCACTG ACATTATACC TTGATTTATG GACTACCAGT CCAAAATGTC ACTTTTCTAA 541 GTGAAACAAA ATATACTTGA ATTGTGCATT TTACTTGGTC AA Predicted gene structure (within gDNA segment 101790 to 103689): Exon 1 102445 103026 ( 582 n); cDNA 1 582 ( 582 n); score: 0.959 MATCH C08HBa0197J17.1+ SGN-E267707- 0.959 582 1.000 C PGS_C08HBa0197J17.1+_SGN-E267707- (102445 103026) Alignment (genomic DNA sequence = upper lines): TCCATATAAA ATTGCATCAA AACTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTCAT 102504 |||| ||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||| || TCCACATAAA ATTGCATCAA AATTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTTAT 60 TTGTCAAATT ATCAATCTGT AGGTCAAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 102564 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCAAATT AACAATCTGT AGGTCAAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 120 AAAATACAAG GACTATTAGG GTCATTCTTT TGTACTCTTT TTCTTCCTTG ACTATTTCAA 102624 |||||||||| ||| |||||| ||||||||| ||||| | || |||||||||| |||||||||| AAAATACAAG GACAATTAGG ATCATTCTTT TGTAC-CCTT TTCTTCCTTG ACTATTTCAA 179 TCCATATAAG GATTCTTGAA GCTTTATTGG AAAAGTTTCT TTCAAACTCT TATATGCTTC 102684 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| | |||||||| TCCATATAAG GATTCTTGAA GCTTTATTGA AAAAGTTTCT TTCAAACTCT TGTATGCTTC 239 AGACACCTCG ATTGTTTCAA GGATTTTCAT ATAACCTTCA TTGTCTAGCT AGACATTACA 102744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACACCTCG ATTGTTTCAA GGATTTTCAT ATAACCTTCA TTGTCTAGCT AGACATTACA 299 ATTATTCATT TACATGCATT CAAG-TTTTC ATATGTTGCC AGATCAAAAC AAACCTCATT 102803 |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ATTATTCA-T TACATGCATT CAAGCTTTTC ATATGTTGCC AGATCAAAAC AAACCTCATT 358 GCATCCACCA AAGGAGAAAA TATCTCCAAT AATGTCAGGA -TTTTGCGAT AAACTTTTAT 102862 |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| |||| ||||| GCATCCACCA AAGGAGAAAA CATCTCCAAT AATGTCAGGA TTTTTGCGAT AAACCTTTAT 418 GCCCCAAGGC ACAAATCGTA TTTGATATCT TACGGTTATA CTATCGCATA ATAATTTATT 102922 |||||||| | ||||| |||| |||||||||| |||||||||| ||| ||||| |||||||||| GCCCCAAGAC ACAAACCGTA TTTGATATCT TACGGTTATA TTATTGCATA ATAATTTATT 478 TGTACCCCAC TGACAATATA CCTTGATTTA TGGACTACCA GTCCAAAATG TCACTTTTCT 102982 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACCCCAC TGACATTATA CCTTGATTTA TGGACTACCA GTCCAAAATG TCACTTTTCT 538 AAGTGAAACA AAATATACTT GAATTGTGCA TTTTACTAGG TCAA 103026 |||||||||| |||||||||| |||||||||| ||||||| || |||| AAGTGAAACA AAATATACTT GAATTGTGCA TTTTACTTGG TCAA 582 hqPGS_C08HBa0197J17.1+_SGN-E267707- (102445 103026) ******************************************************************************** EST sequence 100 -strand 554 n (File: SGN-E205808-) 1 CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 61 TAGGATCATT CTTTTGTACC CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 121 GAAGCTTTAT TGAAAAAGTT TCTTTCAAAC TCTTGTATGC TTCAGACACC TCGATTGTTT 181 CAAGGATTTT CATATAACCT TCATTGTCTA GCTAGACATT ACAATTATTC ATTACATGCA 241 TTCAAGCTTT TCATATGTTG CCAGATCAAA ACAAACCTCA TTGCATCCAC CAAAGGAGAA 301 AACATCTCCA ATAATGTCAG GATTTTTGCG ATAAACCTTT ATGCCCCAAG ACACAAACCG 361 TATTTGATAT CTTACGGTTA TATTATTGCA TAATAATTTA TTTGTACCCC ACTGACATTA 421 TACCTTGATT TATGGACTAC CAGTCCAAAA TGTCACTTTT CTAAGTGAAA CAAAATATAC 481 TTGAATTGTG CATTTTACTT GGTCAACCAT TAATCTGTCC ACACTATATG ACAGATTTGA 541 ATTCAAGATC CTCG Predicted gene structure (within gDNA segment 101911 to 103674): Exon 1 102521 103074 ( 554 n); cDNA 1 554 ( 554 n); score: 0.960 MATCH C08HBa0197J17.1+ SGN-E205808- 0.960 554 1.000 C PGS_C08HBa0197J17.1+_SGN-E205808- (102521 103074) Alignment (genomic DNA sequence = upper lines): CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACTAT 102580 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 60 TAGGGTCATT CTTTTGTACT CTTTTTCTTC CTTGACTATT TCAATCCATA TAAGGATTCT 102640 |||| ||||| ||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TAGGATCATT CTTTTGTAC- CCTTTTCTTC CTTGACTATT TCAATCCATA TAAGGATTCT 119 TGAAGCTTTA TTGGAAAAGT TTCTTTCAAA CTCTTATATG CTTCAGACAC CTCGATTGTT 102700 |||||||||| ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| TGAAGCTTTA TTGAAAAAGT TTCTTTCAAA CTCTTGTATG CTTCAGACAC CTCGATTGTT 179 TCAAGGATTT TCATATAACC TTCATTGTCT AGCTAGACAT TACAATTATT CATTTACATG 102760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TCAAGGATTT TCATATAACC TTCATTGTCT AGCTAGACAT TACAATTATT CA-TTACATG 238 CATTCAAG-T TTTCATATGT TGCCAGATCA AAACAAACCT CATTGCATCC ACCAAAGGAG 102819 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCAAGCT TTTCATATGT TGCCAGATCA AAACAAACCT CATTGCATCC ACCAAAGGAG 298 AAAATATCTC CAATAATGTC AGGA-TTTTG CGATAAACTT TTATGCCCCA AGGCACAAAT 102878 |||| ||||| |||||||||| |||| ||||| |||||||| | |||||||||| || |||||| AAAACATCTC CAATAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGACACAAAC 358 CGTATTTGAT ATCTTACGGT TATACTATCG CATAATAATT TATTTGTACC CCACTGACAA 102938 |||||||||| |||||||||| |||| ||| | |||||||||| |||||||||| ||||||||| CGTATTTGAT ATCTTACGGT TATATTATTG CATAATAATT TATTTGTACC CCACTGACAT 418 TATACCTTGA TTTATGGACT ACCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 102998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATACCTTGA TTTATGGACT ACCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 478 ACTTGAATTG TGCATTTTAC TAGGTCAACC ATTTATCTGT CCATACTATA TGACAGATTT 103058 |||||||||| |||||||||| | |||||||| ||| |||||| ||| |||||| |||||||||| ACTTGAATTG TGCATTTTAC TTGGTCAACC ATTAATCTGT CCACACTATA TGACAGATTT 538 GAATTCAAGA TCCTCG 103074 |||||||||| |||||| GAATTCAAGA TCCTCG 554 hqPGS_C08HBa0197J17.1+_SGN-E205808- (102521 103074) ******************************************************************************** EST sequence 91 -strand 454 n (File: SGN-E202657-) 1 ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGAAAA AGTTTCTTTC AAACTCTTGT 61 ATGCTTCAGA CACCTCGATT GTTTCAAGGA TTTTCATATA ACCTTCATTG TCTAGCTAGA 121 CATTACAATT ATTCATTACA TGCATTCAAG CTTTTCATAT GTTGCCAGAT CAAATCAAAC 181 CTCATTGCAT CCACCAAAGG AGAAAACATC TCCAATAATG TCAGGATTTT TGCGATAAAC 241 CTTTATGCCC CAAGAAGCAA CCCGTATTTG ATATCTTACG GTTATATTAT TGCATAATAA 301 TTTATTTGTA CCCCACTGAC ATTATACCTT GATTTATGGA CTACCAGTCC AAAATGTCAC 361 TTTTTTAAGT GAAACAAAAT ATACTTGAAT TGTGCATTTT ACTTGGTCAA CCATTAATCT 421 GTCCACACTA TATGACAGAT TTGAATTCAA GATC Predicted gene structure (within gDNA segment 102008 to 104129): Exon 1 102618 103070 ( 453 n); cDNA 1 454 ( 454 n); score: 0.949 MATCH C08HBa0197J17.1+ SGN-E202657- 0.949 453 0.998 C PGS_C08HBa0197J17.1+_SGN-E202657- (102618 103070) Alignment (genomic DNA sequence = upper lines): ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGGAAA AGTTTCTTTC AAACTCTTAT 102677 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||| | ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGAAAA AGTTTCTTTC AAACTCTTGT 60 ATGCTTCAGA CACCTCGATT GTTTCAAGGA TTTTCATATA ACCTTCATTG TCTAGCTAGA 102737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTTCAGA CACCTCGATT GTTTCAAGGA TTTTCATATA ACCTTCATTG TCTAGCTAGA 120 CATTACAATT ATTCATTTAC ATGCATTCAA G-TTTTCATA TGTTGCCAGA TCAAAACAAA 102796 |||||||||| ||||| |||| |||||||||| | |||||||| |||||||||| ||||| |||| CATTACAATT ATTCA-TTAC ATGCATTCAA GCTTTTCATA TGTTGCCAGA TCAAATCAAA 179 CCTCATTGCA TCCACCAAAG GAGAAAATAT CTCCAATAAT GTCAGGA-TT TTGCGATAAA 102855 |||||||||| |||||||||| ||||||| || |||||||||| ||||||| || |||||||||| CCTCATTGCA TCCACCAAAG GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA 239 CTTTTATGCC CCAAGGCACA AATCGTATTT GATATCTTAC GGTTATACTA TCGCATAATA 102915 | |||||||| ||||| || | ||||||| |||||||||| ||||||| || | |||||||| CCTTTATGCC CCAAGAAGCA ACCCGTATTT GATATCTTAC GGTTATATTA TTGCATAATA 299 ATTTATTTGT ACCCCACTGA CAATATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA 102975 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ATTTATTTGT ACCCCACTGA CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA 359 CTTTTCTAAG TGAAACAAAA TATACTTGAA TTGTGCATTT TACTAGGTCA ACCATTTATC 103035 ||||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||| ||| CTTTTTTAAG TGAAACAAAA TATACTTGAA TTGTGCATTT TACTTGGTCA ACCATTAATC 419 TGTCCATACT ATATGACAGA TTTGAATTCA AGATC 103070 |||||| ||| |||||||||| |||||||||| ||||| TGTCCACACT ATATGACAGA TTTGAATTCA AGATC 454 hqPGS_C08HBa0197J17.1+_SGN-E202657- (102618 103070) ******************************************************************************** EST sequence 50 +strand 664 n (File: SGN-E273497+) 1 TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCATTACAAT TTTTCATTAC 61 ATGCATTCAA GTTTTTCATA TGTTGCCAGA TCAAAACAAA CCTCATTGCA TCCACCAAAG 121 GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA CCTTTATGCC CCAAGGCACA 181 AACCGTATTT GATATCTTAC GGTTATACTA TCACATAATA ATTTATTTGT ACCCCACTGA 241 CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA CTTTTCTAAG TGAAACAAAA 301 TATACTTGAA TTGTGCATTT TACTTGGCTA ACCATTTATC TGTTCACACT ATATGACAGA 361 TTTGAATTCA AGATCCTCAT CACAATTTAT ATCATTGAGC GCTACCTCAT ATCAAAGATA 421 CCGTCGACGG TTATTTGATA TCGATTCCAA CAAGACATAA CTTATCGAGA TCTCTTCAAT 481 TTTTTTCATT ATTTCAGGTA CCTGAACCTT TTTCAAGATT TTATGAAGTG TTATGTCAAT 541 GTGCTCCTTT ATAGCACTTG CCTCATTATC ATGACCATAT TGATCATTTG CTCCTTCCTT 601 CTTTAAGGAA TTTTATATTT GGAATCAATT GGTCTATTAC GCTTTCGGCG TATCATAAAC 661 TCTG Predicted gene structure (within gDNA segment 101974 to 104146): Exon 1 102682 103356 ( 675 n); cDNA 1 664 ( 664 n); score: 0.930 MATCH C08HBa0197J17.1+ SGN-E273497+ 0.930 675 1.017 C PGS_C08HBa0197J17.1+_SGN-E273497+ (102682 103356) Alignment (genomic DNA sequence = upper lines): TTCAGACACC TCGATTGTTT CAAGGATTTT CATATAACCT TCATTGTCTA GCTAGACATT 102741 |||||||||| | |||||||| |||||||||| |||||||||| ||| | || | | | | TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCA---T-TA -C---A-A-T 50 ACAATTATTC ATTTACATGC ATTCAAG-TT TTCATATGTT GCCAGATCAA AACAAACCTC 102800 || ||| | |||||||| ||||||| || |||||||||| |||||||||| |||||||||| ----TT-TTC A-TTACATGC ATTCAAGTTT TTCATATGTT GCCAGATCAA AACAAACCTC 104 ATTGCATCCA CCAAAGGAGA AAATATCTCC AATAATGTCA GGA-TTTTGC GATAAACTTT 102859 |||||||||| |||||||||| ||| |||||| |||||||||| ||| |||||| ||||||| || ATTGCATCCA CCAAAGGAGA AAACATCTCC AATAATGTCA GGATTTTTGC GATAAACCTT 164 TATGCCCCAA GGCACAAATC GTATTTGATA TCTTACGGTT ATACTATCGC ATAATAATTT 102919 |||||||||| |||||||| | |||||||||| |||||||||| |||||||| | |||||||||| TATGCCCCAA GGCACAAACC GTATTTGATA TCTTACGGTT ATACTATCAC ATAATAATTT 224 ATTTGTACCC CACTGACAAT ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT 102979 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTACCC CACTGACATT ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT 284 TCTAAGTGAA ACAAAATATA CTTGAATTGT GCATTTTACT AGGTCAACCA TTTATCTGTC 103039 |||||||||| |||||||||| |||||||||| |||||||||| || ||||| ||||||||| TCTAAGTGAA ACAAAATATA CTTGAATTGT GCATTTTACT TGGCTAACCA TTTATCTGTT 344 CATACTATAT GACAGATTTG AATTCAAGAT CCTCGTCACA ATTTATATCA TTGAGCGCTA 103099 || ||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CACACTATAT GACAGATTTG AATTCAAGAT CCTCATCACA ATTTATATCA TTGAGCGCTA 404 CCTCGTATCA AAGATACCAT CGACGGTTAT TTGATATCGA TTCCAACAAG ACATAACTTA 103159 |||| ||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| CCTCATATCA AAGATACCGT CGACGGTTAT TTGATATCGA TTCCAACAAG ACATAACTTA 464 TCGAGATCTC TTC-A--TTT TTCATTATTT CAGGTACCTG AACCTTTTTC AAGATTTTAT 103216 |||||||||| ||| | ||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGATCTC TTCAATTTTT TTCATTATTT CAGGTACCTG AACCTTTTTC AAGATTTTAT 524 GAAGTGTTAT GTCAATGTGC TCTTTTATAG CACTTGCCTC ATTATCATGA CCATATTGAT 103276 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GAAGTGTTAT GTCAATGTGC TCCTTTATAG CACTTGCCTC ATTATCATGA CCATATTGAT 584 CATTTGCTCC TTCCTTCTTC AAGGAATTTT ATATTTGGAA TCGATTGGTC TATTACGCTT 103336 |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CATTTGCTCC TTCCTTCTTT AAGGAATTTT ATATTTGGAA TCAATTGGTC TATTACGCTT 644 CCGGCGTATC ATAGACTCTG 103356 ||||||||| ||| |||||| TCGGCGTATC ATAAACTCTG 664 hqPGS_C08HBa0197J17.1+_SGN-E273497+ (102682 103356) ******************************************************************************** EST sequence 51 +strand 388 n (File: SGN-E273387+) 1 TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCATTACAAT TTTTCATTAC 61 ATGCATTCAA GTTTTTCATA TGTTGCCAGA TCAAAACAAA CCTCATTGCA TCCACCAAAG 121 GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA CCTTTATGCC CCAAGGCACA 181 AACCGTATTT GATATCTTAC GGTTATACTA TCACATAATA ATTTATTTGT ACCCCACTGA 241 CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA CTTTTCTAAG TGAAACAAAA 301 TATACTTGAA TTGTGCATTT TACTTGGCTA ACCATTTATC TGTTCACACT ATATGACAGA 361 TTTGAATTCA AGATCCTCAT CACAATTT Predicted gene structure (within gDNA segment 101974 to 103783): Exon 1 102682 103083 ( 402 n); cDNA 1 388 ( 388 n); score: 0.918 MATCH C08HBa0197J17.1+ SGN-E273387+ 0.918 402 1.036 C PGS_C08HBa0197J17.1+_SGN-E273387+ (102682 103083) Alignment (genomic DNA sequence = upper lines): TTCAGACACC TCGATTGTTT CAAGGATTTT CATATAACCT TCATTGTCTA GCTAGACATT 102741 |||||||||| | |||||||| |||||||||| |||||||||| ||| | || | | | | TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCA---T-TA -C---A-A-T 50 ACAATTATTC ATTTACATGC ATTCAAG-TT TTCATATGTT GCCAGATCAA AACAAACCTC 102800 || ||| | |||||||| ||||||| || |||||||||| |||||||||| |||||||||| ----TT-TTC A-TTACATGC ATTCAAGTTT TTCATATGTT GCCAGATCAA AACAAACCTC 104 ATTGCATCCA CCAAAGGAGA AAATATCTCC AATAATGTCA GGA-TTTTGC GATAAACTTT 102859 |||||||||| |||||||||| ||| |||||| |||||||||| ||| |||||| ||||||| || ATTGCATCCA CCAAAGGAGA AAACATCTCC AATAATGTCA GGATTTTTGC GATAAACCTT 164 TATGCCCCAA GGCACAAATC GTATTTGATA TCTTACGGTT ATACTATCGC ATAATAATTT 102919 |||||||||| |||||||| | |||||||||| |||||||||| |||||||| | |||||||||| TATGCCCCAA GGCACAAACC GTATTTGATA TCTTACGGTT ATACTATCAC ATAATAATTT 224 ATTTGTACCC CACTGACAAT ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT 102979 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTACCC CACTGACATT ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT 284 TCTAAGTGAA ACAAAATATA CTTGAATTGT GCATTTTACT AGGTCAACCA TTTATCTGTC 103039 |||||||||| |||||||||| |||||||||| |||||||||| || ||||| ||||||||| TCTAAGTGAA ACAAAATATA CTTGAATTGT GCATTTTACT TGGCTAACCA TTTATCTGTT 344 CATACTATAT GACAGATTTG AATTCAAGAT CCTCGTCACA ATTT 103083 || ||||||| |||||||||| |||||||||| |||| ||||| |||| CACACTATAT GACAGATTTG AATTCAAGAT CCTCATCACA ATTT 388 hqPGS_C08HBa0197J17.1+_SGN-E273387+ (102682 103083) ******************************************************************************** EST sequence 121 -strand 767 n (File: SGN-E354965-) 1 AATGATTTTA TCACATTTGG ACCCATTCTT TTATAGAATG GTCGAGCATT CACGATACTC 61 ATCACAAGTC ACATTCTCTT CAAGGAATGA ACTAATTATT TATATGTACT TCATAAATTT 121 GCATTATAAG CACATTGTCA TGGCTTTAAA ATTCATCATA TTTCCATGAC ACACCTCAAC 181 ATCACTTTGA AAGATGAAGT GTACCATCAC TTTATCTTCT TGTGTCATGA TAGAGGATTT 241 ATAAACTTGT CAAATTATGG GGTTGACAAC ATTGACAAGT CTAATAACCT TTCATACCAT 301 TTTGATAATA AAAGTTGCCT TCACATTTTG AAGGACTATT TGAAGAACTC ATAGTGTTCT 361 TCCTTTTATC ATTACCACAA TGATGACTAT TATAATTCTT TCCCTCCACT CCCTTATTCT 421 ATATCATTAA TTATTTGTCA TCTTTCAAAC TAATCATTCA CTGCTACCAC ATTCATATGA 481 TTGAATGGAG CAAGTCAACA GGTGGATTTC AGAGTTATCA CATGTTGCTA CCATATTCTT 541 TTCAAGAAAT GGAGCAAATT CAATATGATG AATTTAAAGA CATTTCATCA AAAATATATT 601 ATTTTTCTTA GTCATCATTT TATGCATTGG ATCAAACTCA ATGTCTTACC CATGTAAGGC 661 GTGTTACGCC ATAATTCTAT GGAACTTGAA CCCAATCACG GTGTATCAAA ACTCTAATTG 721 ATGTCTTACC CTTTTGGTGA GATAGAACTT GAATCTATCG TCTTATC Predicted gene structure (within gDNA segment 103965 to 109541): Exon 1 104854 105551 ( 698 n); cDNA 1 701 ( 701 n); score: 0.869 Intron 1 105552 105648 ( 97 n); Pd: 0.000 (s: 0.74), Pa: 0.624 (s: 0.80) Exon 2 105649 105713 ( 65 n); cDNA 702 765 ( 64 n); score: 0.831 MATCH C08HBa0197J17.1+ SGN-E354965- 0.866 763 0.995 C PGS_C08HBa0197J17.1+_SGN-E354965- (104854 105551,105649 105713) Alignment (genomic DNA sequence = upper lines): AATGATTTTA TCATATCTGG ACCCATTCTC ATATAGAATG GTCGAGCATT CACCATACTC 104913 |||||||||| ||| || ||| ||||||||| ||||||||| |||||||||| ||| |||||| AATGATTTTA TCACATTTGG ACCCATTCTT TTATAGAATG GTCGAGCATT CACGATACTC 60 ATCACAAGTC ACATTCTCTT CAAGGAATGG ACTAATTATT TATTTGTATT TCATAAATTT 104973 |||||||||| |||||||||| ||||||||| |||||||||| ||| |||| | |||||||||| ATCACAAGTC ACATTCTCTT CAAGGAATGA ACTAATTATT TATATGTACT TCATAAATTT 120 GCATTATAAG CACATTGTCA TGGCTTTAAA ATTCATCATA TTTCCATGAC ACACCTCAAC 105033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTATAAG CACATTGTCA TGGCTTTAAA ATTCATCATA TTTCCATGAC ACACCTCAAC 180 ATCACTTTTA AAGATTAAGT GTACCATCAC TTTATCTTCT TGTATCATGA TAGAGGATTT 105093 |||||||| | ||||| |||| |||||||||| |||||||||| ||| |||||| |||||||||| ATCACTTTGA AAGATGAAGT GTACCATCAC TTTATCTTCT TGTGTCATGA TAGAGGATTT 240 ATAAACTTGT CAAATTATTG GGTCGACAAC ATTCACAAGT CCAATGTCCT TTCATACCAT 105153 |||||||||| |||||||| | ||| |||||| ||| |||||| | ||| ||| |||||||||| ATAAACTTGT CAAATTATGG GGTTGACAAC ATTGACAAGT CTAATAACCT TTCATACCAT 300 TTTGATAATG AAAACTGTCT TCACATTTTG AAGGACTATT TGGAGAACCC ATAGTGTTCT 105213 ||||||||| ||| || || |||||||||| |||||||||| || ||||| | |||||||||| TTTGATAATA AAAGTTGCCT TCACATTTTG AAGGACTATT TGAAGAACTC ATAGTGTTCT 360 TCCTTTTATA TTTACCACAA TGATGACTAT TATAATTCCG TCCCTTCATG CCCTTTTTC- 105272 ||||||||| ||||||||| |||||||||| |||||||| ||||| || ||||| ||| TCCTTTTATC ATTACCACAA TGATGACTAT TATAATTCTT TCCCTCCACT CCCTTATTCT 420 ATATCGCTAA TCATTTGTCA TCTTTCAGAC TAATTATTTA CTGCTACCAC ATTCATACGA 105332 ||||| ||| | |||||||| ||||||| || |||| ||| | |||||||||| ||||||| || ATATCATTAA TTATTTGTCA TCTTTCAAAC TAATCATTCA CTGCTACCAC ATTCATATGA 480 TAGAATAGAG CAAGTCAGCA -TCGGATTTC AAAGTTATCA TATGTTGCTA CCACATTCTT 105391 | |||| ||| ||||||| || ||||||| | |||||||| ||||||||| ||| |||||| TTGAATGGAG CAAGTCAACA GGTGGATTTC AGAGTTATCA CATGTTGCTA CCATATTCTT 540 TTCAAGGAAT GGAGCAAGTT CAATATGACA AATTTCAAAG CTTTTCATCA AAACCTTAGT 105451 |||||| ||| ||||||| || |||||||| ||||| || | |||||||| ||| || | TTCAAGAAAT GGAGCAAATT CAATATGATG AATTTAAAGA CATTTCATCA AAAATATA-T 599 CATCATTGTT --TCATCACT ATGGTGCATT GACTCAAACT CAATGTCTTA TCCATACAAG 105509 || || || |||||| | | |||||| | ||||||| |||||||||| |||| ||| TATTTTTCTT AGTCATCA-T TTTATGCATT GGATCAAACT CAATGTCTTA CCCATGTAAG 658 GCGTGTTAGG CCA-AATTCT AAAGGACTTG AACCCAATCC TTATCATCAT GGTGCATCAA 105568 |||||||| | ||| |||||| | | ||||| ||||||||| GCGTGTTACG CCATAATTCT ATGGAACTTG AACCCAATCA CGG....... .......... 701 AACTCAGATT TGATGTCTTA TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC 105628 .......... .......... .......... .......... .......... .......... 701 TCAAATATTT TTCATTATAG TGCATCCGGA CTTTAACCTG ATGTCTTACC CTTTTGGTGC 105688 || ||| | || ||| || |||||||||| ||||||||| .......... .......... TGTATCAAAA CTCTAA-TTG ATGTCTTACC CTTTTGGTGA 740 GATGAAACTT GAATCCATCG TCTTA 105713 ||| ||||| ||||| |||| ||||| GATAGAACTT GAATCTATCG TCTTA 765 hqPGS_C08HBa0197J17.1+_SGN-E354965- (104854 105551,105649 105713) ******************************************************************************** EST sequence 5 +strand 546 n (File: SGN-E248730+) 1 GAGCAAATTT AATATGATGA ATTTCAATAC TTTTCATCAA AAATATATTA TTTTGCCTCA 61 GTCATCATCT TATCATCAAT TTGGTGCATG GAGACTCAAA CTCAATGTCT TATCCATACA 121 AGGCACATTA GGCCATAATT CTATGGGACT TGAACCCAAT ACCTTATCAT TATGGTGCAT 181 CAAAACTCGA ATTGATGTCT TACCCTCTTG GTGCGATAGA ACTTGAATCT ACCGTCTTAC 241 CCTCAAATAT TTTTCATAAT GAATGACATA AATGAGTCTT TTTTAAACAA ATTTGATAAC 301 ATATTTGAGT TTTTTTCTTA TGGTTAAATG ATGCAAGTGC TTCATCACTT TCATAAAGCA 361 TTTGAACAAT ATTATATATT TGTGCAGAAG AGAGCTACTT CCTAATGGAT ATTATATGCA 421 TCAAAAGATT CACATTACTC GATTTTCAAA GCAGCAAGAA TGTATCGAAT GGAGCTACAA 481 ACTATCAACA CTTTAGTTAA TGGGGAAATT GATTATGAAG ATTTACAATC AAAGTTACTT 541 GTCAAC Predicted gene structure (within gDNA segment 103960 to 110076): Exon 1 105446 105643 ( 198 n); cDNA 57 257 ( 201 n); score: 0.843 Intron 1 105644 108376 (2733 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.64) Exon 2 108377 108428 ( 52 n); cDNA 258 309 ( 52 n); score: 0.615 Intron 2 108429 108878 ( 450 n); Pd: 0.000 (s: 0.60), Pa: 0.088 (s: 0) Exon 3 108879 108905 ( 27 n); cDNA 310 333 ( 24 n); score: 0.778 MATCH C08HBa0197J17.1+ SGN-E248730+ 0.796 277 0.507 C PGS_C08HBa0197J17.1+_SGN-E248730+ (105446 105643,108377 108428,108879 108905) Alignment (genomic DNA sequence = upper lines): CTTAGTCATC ATTGTTTCAT CACTATGGTG CATTGA--CT CAAACTCAAT GTCTTATCCA 105503 || ||||||| || | |||| || | ||||| ||| || || |||||||||| |||||||||| CTCAGTCATC ATCTTATCAT CAATTTGGTG CATGGAGACT CAAACTCAAT GTCTTATCCA 116 TACAAGGCGT GTTAGGCCA- AATTCTAAAG GACTTGAACC CAAT-CCTTA TCATCATGGT 105561 |||||||| |||||||| ||||||| | |||||||||| |||| ||||| |||| ||||| TACAAGGCAC ATTAGGCCAT AATTCTATGG GACTTGAACC CAATACCTTA TCATTATGGT 176 GCATCAAAAC TCAGATTTGA TGTCTTATCC TCTTGGTGCG ATAGATTTTA AATCTATCGT 105621 |||||||||| || || |||| ||||||| || |||||||||| ||||| || |||||| ||| GCATCAAAAC TC-GAATTGA TGTCTTACCC TCTTGGTGCG ATAGAACTTG AATCTACCGT 235 CTTATCCTCA AATATTTTTC ATTATAGTGC ATCCGGACTT TAACCTGATG TCTTACCCTT 105681 |||| ||||| |||||||||| || CTTACCCTCA AATATTTTTC AT........ .......... .......... .......... 257 TTGGTGCGAT GAAACTTGAA TCCATCGTCT TACCCTTAAC CAACGGTATA ATAGACCAAA 105741 .......... .......... .......... .......... .......... .......... 257 GTACAACATG ACTCACCCTT TCAGTCTTTC AAAACAATCA AAATAACATT CAAACTCATG 105801 .......... .......... .......... .......... .......... .......... 257 CTATTAAAAT TTTGTACCTT CTTCTATTTA AGAAGTTTTG TATAGCATGT TATATTCAAC 105861 .......... .......... .......... .......... .......... .......... 257 CAATAGTAGT ATATGTCTTC GGTTCTTGAT AATTGTTAGT GACTGAATAT TATTTTTATT 105921 .......... .......... .......... .......... .......... .......... 257 CTAAATCATA AAATATTCTA GAAAATACAT ACCTGATTTT ATGCATATAA TACCTTGATT 105981 .......... .......... .......... .......... .......... .......... 257 CTCATAACGA GATCAACCAA AACACGAGTT AATGAAAAAA CTAAAACTCA ATCTTAATTG 106041 .......... .......... .......... .......... .......... .......... 257 GCTAGAGATT CGTGCTGATA ACGTGTTATA AAATCAAGCT CATAAGAATA TAATCATAAA 106101 .......... .......... .......... .......... .......... .......... 257 GAGAAGAAGA CAAGAGAAGT AGATAGAAGA GGAATTTTCT TTCTTATTCA AGTGTATTCA 106161 .......... .......... .......... .......... .......... .......... 257 AGTCTCATAT GTATCTATTA CAATAGTGAA TGAACAACCC TATTTATAGA GTGAGAAATC 106221 .......... .......... .......... .......... .......... .......... 257 ACTCTAAACG TCACCATATT AAGTATCATA ATAAATAGAT ACATTCTTAT CCAAAAAGGT 106281 .......... .......... .......... .......... .......... .......... 257 TCATGTAACC TAGTGAATAT GAATGGTTGT TCATGTACCA ACCTTATGGA CTATGCACTC 106341 .......... .......... .......... .......... .......... .......... 257 ATTCAATGAA TTTATAACAG AATTCATGTT TTAATGTTCT TTTTTTAAAG GATGTGAAAC 106401 .......... .......... .......... .......... .......... .......... 257 GTTTCAATAA TTCAATTAAT TTGAAATGAA AAGAGTATAC TTTTTAGTAA TCTTAGTTTT 106461 .......... .......... .......... .......... .......... .......... 257 ATACTATGTT TTGTTATATT ATTCTCTCCA CATATATTAA TTATTTCGAA TAAATTAATT 106521 .......... .......... .......... .......... .......... .......... 257 GTAGTAAGCG CGATGATAAA AATGGATAAA AGAATACGTG TCTAGTCACA TATTCAAACC 106581 .......... .......... .......... .......... .......... .......... 257 TAACAAGATA TTTGACCAAA TCAATGTGAT GGCAATTGGA TTTCACATGT AATACTGAAA 106641 .......... .......... .......... .......... .......... .......... 257 TTATAGTACA CTAGAACTTA TCTACCTACA ACGGCAGCAA AGAGTTGTAG ACAACTTTTC 106701 .......... .......... .......... .......... .......... .......... 257 TTTTATAGTT GTGACATTCT AATGAGTTTG TGTGTATGTT TGATTAGTTT TAGTATAGGT 106761 .......... .......... .......... .......... .......... .......... 257 GTCGAATAGC TTTATTCATT AAAGCTAGGA TATATGAGAA GATTATTTAG TAATTTTTGG 106821 .......... .......... .......... .......... .......... .......... 257 TTAAAGATAA TTTTTTATTG GTATGTCTAC ACAAATATTA TCGTAAGTGC AAGTTTAATC 106881 .......... .......... .......... .......... .......... .......... 257 TTTATCTTGA GCGCAAGTTT AGTTTTCTTC TTTAACCAAT CACTTTTAAT TTTTTACGAA 106941 .......... .......... .......... .......... .......... .......... 257 ATTCTAACTC AGCGATTTGC TTACTTCAAT ATTATCTCAT CTAAAGTTTT AAATTATTAA 107001 .......... .......... .......... .......... .......... .......... 257 ACAATTATTA TTATAGTCTT AAATAAAGGT AACTAACATT GTGTGCATTT ATTAATACAA 107061 .......... .......... .......... .......... .......... .......... 257 CAATCGTTTT TGGCAAGTTG AATTTATCTC AAATAATTAA GATTTTAGAA GGAAAAAAGG 107121 .......... .......... .......... .......... .......... .......... 257 AGGTCATTTA TTTCCATTTT TGCTATGTAG TTGAACGTTC ACATACTCTT GTGACCGGGG 107181 .......... .......... .......... .......... .......... .......... 257 TACTAAATAT TTTTCTTAAT ATACAAATTC TTCCATTCAT TTTTTCTTAT TTAATTTTGA 107241 .......... .......... .......... .......... .......... .......... 257 TTTACGTACC TCTGATAATA AATAAAATAA TATTTTATAA TTCAAAAAAT ATAACAAAAA 107301 .......... .......... .......... .......... .......... .......... 257 AATAACTTTA GTTAATAGTA AGGATAAATT AGAATTAAGT GATAAATGAA TATATATTTT 107361 .......... .......... .......... .......... .......... .......... 257 GAATATAATA AATAAGTAAA AATGAATCGA GAGAGTAACA ATATATCCAA TATAATTCGA 107421 .......... .......... .......... .......... .......... .......... 257 CAAATGGAAC TGTCTAAGGG ACGTCATGTG TTTGAGGTAG AAATGTTATT TTTGATAGAT 107481 .......... .......... .......... .......... .......... .......... 257 CATCACCTTT AGTAAAATAT TTCAAAACAA CTTTGAAATG GTTATACAAT AATGTATAAT 107541 .......... .......... .......... .......... .......... .......... 257 TCATGTAAAA GAAAACAAAA AAAAAATTAA TAACAACAAA TATATAATAC AATAAACGAA 107601 .......... .......... .......... .......... .......... .......... 257 ACAAAAAAAA ATAGCAAGTA ATACTAATAA AAACTAAATA TATCAAACTA TCTACTAACT 107661 .......... .......... .......... .......... .......... .......... 257 TTCAATTCTA ATCCTCGATC TCCATATGTT CGACGGACTA AAATATTAAT CATAAAATAT 107721 .......... .......... .......... .......... .......... .......... 257 GTGCAAAAAT CATTAAAATA CACATAATAT GAAACTATAA AACAAAAGGG ATCACTCCAA 107781 .......... .......... .......... .......... .......... .......... 257 CATTGGTACG AATCTTTTTG CAACTGGCCC CCCTTCTTTG TCCTCATTGA TATGTCCATC 107841 .......... .......... .......... .......... .......... .......... 257 ATTAAAGCAA TCTAATTAAT TAATTAAACT AAAATAAATT ACAGTCCACT ATCACTGGCC 107901 .......... .......... .......... .......... .......... .......... 257 TCTGTACAGT AATTTCCCTG ATTAGTCAGT TAATAATTTG TAATTTCCCA GAAAACTTCA 107961 .......... .......... .......... .......... .......... .......... 257 CTAATTAAAA TGGTTAAACA AAAAAGCAAC GGTCAAGTAA AAAACGGGTA TCATGAGACA 108021 .......... .......... .......... .......... .......... .......... 257 TGCACGTGCA TGGGACGTGA CTTCACCTGC ACCCTCTAAA AGAACAAACA GACAAAATTA 108081 .......... .......... .......... .......... .......... .......... 257 AAAAAAAAAG TTTAATACAT GATCATGTCT TTTAACTTAA TTTCGAAATA TTTTTTTTAA 108141 .......... .......... .......... .......... .......... .......... 257 CTTTATGCGT GAATAAGTAG ATACTTAAAT TTATATAGAA TTGAATAAGT AAATTCTACT 108201 .......... .......... .......... .......... .......... .......... 257 TGACGTCCTA CGTGATCATT TGTGTCAGTG CAGGATTCAG AATTTTCATT TAGAAAATTC 108261 .......... .......... .......... .......... .......... .......... 257 AAAAAAAAAA AAGTAATGCT TTTGAATATA CAATATAATT TTTTACTGAG GGCATACTCT 108321 .......... .......... .......... .......... .......... .......... 257 AGGTCCCGCC CTCCCCGGTT TGCGTCTTAC GCTCTTATTG TATCATACCA GGTAGAATGT 108381 |||| .......... .......... .......... .......... .......... .....AATGA 262 GTGTGATTAC TTGATCATTT TTATACAAAT TAAAGTATTT ACTTGTACAC GTTTAAAGCT 108441 || || | | || ||| ||| |||||| | | | | | ||| ATGACATAAA TGAGTCTTTT TTAAACAAAT TTGATAACAT ATTTGAG... .......... 309 AAAATATATA GATAAAATAA GACAGATAAA TTAAAAGTTT TTTTTTTGGT TTGTTAATTT 108501 .......... .......... .......... .......... .......... .......... 309 TATGATAGTT AAAATAAGAC AGACAAATTA AAATAAGACA GACAAATTAA AACGTGAGAA 108561 .......... .......... .......... .......... .......... .......... 309 AAAGAAAAAT AATTTTTGAC ACTGTTCCTT ATAATACCAA CTCTCTCTCT CAACGGTTAT 108621 .......... .......... .......... .......... .......... .......... 309 ATTCCTCTGA CATATACCTC AACGGTCATA TTCTTGTTCC TTTTCCACCG TCTGATTAAG 108681 .......... .......... .......... .......... .......... .......... 309 ATCGGACGGT GATAGATGGA GGTTCCTCTC TCCCCTTTCT CCAACATCAT CTTTACCAAG 108741 .......... .......... .......... .......... .......... .......... 309 CCATGATTTG TTTCCCTCTG GAAGTAAAAA ACAAGAAGAG GGCTGTTTCA ATCTTGATAT 108801 .......... .......... .......... .......... .......... .......... 309 ATAAAATAAC ACAGTTGTAT ATGGGGTTTA ACTTTTTTGG GTAGTGGGGC TTTGGGAAGT 108861 .......... .......... .......... .......... .......... .......... 309 TACTTCTTTT TCTTCAGTTT TTCTCTGTGG TGATTATAAT GATG 108905 ||| || ||| | || ||| ||| |||| .......... .......TTT TTTTCT-T-A TGGTTA-AAT GATG 333 hqPGS_C08HBa0197J17.1+_SGN-E248730+ (105446 105643,108377 108428,108879 108905) ******************************************************************************** EST sequence 34 +strand 393 n (File: SGN-E204533+) 1 GAGAACTAGT CCGAGTTTTT TTTTTTTTTT TTTCAAAACC TTCTATAGAG GTGAGTTGTG 61 ACATATATCC AACCCATAAT GATTTTATCA CATCTGGACC CATTCTCTTA TAGAATGGTC 121 GAGCATTCAC GATACTCATT ACAAGTCACA TTCTCTTCAA AGATTGGACT AATTATTCAT 181 ATGTACTTTA TAAATTTGCA TTATAAGCAC ATTGTCATGA CTTTAAAATT CATCATATTT 241 CCATGACACA CCTCAACATC ACTTTGAAAG ATAAAGTGTA CCATCACTTT ATCTTCTTAT 301 ATCATGATAG AGGATTTATA AACTTGTCAA GTTATTGGGT TGACAACATT CACAAGTCTA 361 ATGACTTTTC ATACCATTTT CATAATAAAA ATT Predicted gene structure (within gDNA segment 103637 to 106094): Exon 1 104812 105167 ( 356 n); cDNA 36 391 ( 356 n); score: 0.935 PPA cDNA 33 15 MATCH C08HBa0197J17.1+ SGN-E204533+ 0.935 356 0.906 C PGS_C08HBa0197J17.1+_SGN-E204533+ (104812 105167) Alignment (genomic DNA sequence = upper lines): AAACCTTCCA TAGAGGTGAG TTGTAACATA TATCCAACCC ATAATGATTT TATCATATCT 104871 |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| ||||| |||| AAACCTTCTA TAGAGGTGAG TTGTGACATA TATCCAACCC ATAATGATTT TATCACATCT 95 GGACCCATTC TCATATAGAA TGGTCGAGCA TTCACCATAC TCATCACAAG TCACATTCTC 104931 |||||||||| || ||||||| |||||||||| ||||| |||| |||| ||||| |||||||||| GGACCCATTC TCTTATAGAA TGGTCGAGCA TTCACGATAC TCATTACAAG TCACATTCTC 155 TTCAAGGAAT GGACTAATTA TTTATTTGTA TTTCATAAAT TTGCATTATA AGCACATTGT 104991 ||||| || | |||||||||| || || |||| || |||||| |||||||||| |||||||||| TTCAAAGATT GGACTAATTA TTCATATGTA CTTTATAAAT TTGCATTATA AGCACATTGT 215 CATGGCTTTA AAATTCATCA TATTTCCATG ACACACCTCA ACATCACTTT TAAAGATTAA 105051 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| || CATGACTTTA AAATTCATCA TATTTCCATG ACACACCTCA ACATCACTTT GAAAGATAAA 275 GTGTACCATC ACTTTATCTT CTTGTATCAT GATAGAGGAT TTATAAACTT GTCAAATTAT 105111 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| GTGTACCATC ACTTTATCTT CTTATATCAT GATAGAGGAT TTATAAACTT GTCAAGTTAT 335 TGGGTCGACA ACATTCACAA GTCCAATGTC CTTTCATACC ATTTTGATAA TGAAAA 105167 ||||| |||| |||||||||| ||| |||| | ||||||||| ||||| |||| | |||| TGGGTTGACA ACATTCACAA GTCTAATGAC TTTTCATACC ATTTTCATAA TAAAAA 391 hqPGS_C08HBa0197J17.1+_SGN-E204533+ (104812 105167) ******************************************************************************** EST sequence 59 +strand 605 n (File: SGN-E259955+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTAT Predicted gene structure (within gDNA segment 104790 to 111496): Exon 1 105473 105643 ( 171 n); cDNA 1 174 ( 174 n); score: 0.854 Intron 1 105644 108376 (2733 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.64) Exon 2 108377 108428 ( 52 n); cDNA 175 226 ( 52 n); score: 0.615 Intron 2 108429 108878 ( 450 n); Pd: 0.000 (s: 0.60), Pa: 0.088 (s: 0) Exon 3 108879 108905 ( 27 n); cDNA 227 250 ( 24 n); score: 0.778 MATCH C08HBa0197J17.1+ SGN-E259955+ 0.798 250 0.413 C PGS_C08HBa0197J17.1+_SGN-E259955+ (105473 105643,108377 108428,108879 108905) Alignment (genomic DNA sequence = upper lines): GTGCATTG-- ACTCAAACTC AATGTCTTAT CCATACAAGG CGTGTTAGGC CA-AATTCTA 105529 |||||| | |||||||||| |||||||||| |||||||||| | |||||| || ||||||| GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 60 AAGGACTTGA ACCCAAT-CC TTATCATCAT GGTGCATCAA AACTCAGATT TGATGTCTTA 105588 |||||||| ||||||| || ||||||| || |||||||||| ||||| || | |||||||||| TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTC-GAAT TGATGTCTTA 119 TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC TCAAATATTT TTCATTATAG 105648 ||||||||| |||||||| || |||||| ||||||| || |||||||||| ||||| CCCTCTTGGT GCGATAGAAC TTGAATCTAC CGTCTTACCC TCAAATATTT TTCAT..... 174 TGCATCCGGA CTTTAACCTG ATGTCTTACC CTTTTGGTGC GATGAAACTT GAATCCATCG 105708 .......... .......... .......... .......... .......... .......... 174 TCTTACCCTT AACCAACGGT ATAATAGACC AAAGTACAAC ATGACTCACC CTTTCAGTCT 105768 .......... .......... .......... .......... .......... .......... 174 TTCAAAACAA TCAAAATAAC ATTCAAACTC ATGCTATTAA AATTTTGTAC CTTCTTCTAT 105828 .......... .......... .......... .......... .......... .......... 174 TTAAGAAGTT TTGTATAGCA TGTTATATTC AACCAATAGT AGTATATGTC TTCGGTTCTT 105888 .......... .......... .......... .......... .......... .......... 174 GATAATTGTT AGTGACTGAA TATTATTTTT ATTCTAAATC ATAAAATATT CTAGAAAATA 105948 .......... .......... .......... .......... .......... .......... 174 CATACCTGAT TTTATGCATA TAATACCTTG ATTCTCATAA CGAGATCAAC CAAAACACGA 106008 .......... .......... .......... .......... .......... .......... 174 GTTAATGAAA AAACTAAAAC TCAATCTTAA TTGGCTAGAG ATTCGTGCTG ATAACGTGTT 106068 .......... .......... .......... .......... .......... .......... 174 ATAAAATCAA GCTCATAAGA ATATAATCAT AAAGAGAAGA AGACAAGAGA AGTAGATAGA 106128 .......... .......... .......... .......... .......... .......... 174 AGAGGAATTT TCTTTCTTAT TCAAGTGTAT TCAAGTCTCA TATGTATCTA TTACAATAGT 106188 .......... .......... .......... .......... .......... .......... 174 GAATGAACAA CCCTATTTAT AGAGTGAGAA ATCACTCTAA ACGTCACCAT ATTAAGTATC 106248 .......... .......... .......... .......... .......... .......... 174 ATAATAAATA GATACATTCT TATCCAAAAA GGTTCATGTA ACCTAGTGAA TATGAATGGT 106308 .......... .......... .......... .......... .......... .......... 174 TGTTCATGTA CCAACCTTAT GGACTATGCA CTCATTCAAT GAATTTATAA CAGAATTCAT 106368 .......... .......... .......... .......... .......... .......... 174 GTTTTAATGT TCTTTTTTTA AAGGATGTGA AACGTTTCAA TAATTCAATT AATTTGAAAT 106428 .......... .......... .......... .......... .......... .......... 174 GAAAAGAGTA TACTTTTTAG TAATCTTAGT TTTATACTAT GTTTTGTTAT ATTATTCTCT 106488 .......... .......... .......... .......... .......... .......... 174 CCACATATAT TAATTATTTC GAATAAATTA ATTGTAGTAA GCGCGATGAT AAAAATGGAT 106548 .......... .......... .......... .......... .......... .......... 174 AAAAGAATAC GTGTCTAGTC ACATATTCAA ACCTAACAAG ATATTTGACC AAATCAATGT 106608 .......... .......... .......... .......... .......... .......... 174 GATGGCAATT GGATTTCACA TGTAATACTG AAATTATAGT ACACTAGAAC TTATCTACCT 106668 .......... .......... .......... .......... .......... .......... 174 ACAACGGCAG CAAAGAGTTG TAGACAACTT TTCTTTTATA GTTGTGACAT TCTAATGAGT 106728 .......... .......... .......... .......... .......... .......... 174 TTGTGTGTAT GTTTGATTAG TTTTAGTATA GGTGTCGAAT AGCTTTATTC ATTAAAGCTA 106788 .......... .......... .......... .......... .......... .......... 174 GGATATATGA GAAGATTATT TAGTAATTTT TGGTTAAAGA TAATTTTTTA TTGGTATGTC 106848 .......... .......... .......... .......... .......... .......... 174 TACACAAATA TTATCGTAAG TGCAAGTTTA ATCTTTATCT TGAGCGCAAG TTTAGTTTTC 106908 .......... .......... .......... .......... .......... .......... 174 TTCTTTAACC AATCACTTTT AATTTTTTAC GAAATTCTAA CTCAGCGATT TGCTTACTTC 106968 .......... .......... .......... .......... .......... .......... 174 AATATTATCT CATCTAAAGT TTTAAATTAT TAAACAATTA TTATTATAGT CTTAAATAAA 107028 .......... .......... .......... .......... .......... .......... 174 GGTAACTAAC ATTGTGTGCA TTTATTAATA CAACAATCGT TTTTGGCAAG TTGAATTTAT 107088 .......... .......... .......... .......... .......... .......... 174 CTCAAATAAT TAAGATTTTA GAAGGAAAAA AGGAGGTCAT TTATTTCCAT TTTTGCTATG 107148 .......... .......... .......... .......... .......... .......... 174 TAGTTGAACG TTCACATACT CTTGTGACCG GGGTACTAAA TATTTTTCTT AATATACAAA 107208 .......... .......... .......... .......... .......... .......... 174 TTCTTCCATT CATTTTTTCT TATTTAATTT TGATTTACGT ACCTCTGATA ATAAATAAAA 107268 .......... .......... .......... .......... .......... .......... 174 TAATATTTTA TAATTCAAAA AATATAACAA AAAAATAACT TTAGTTAATA GTAAGGATAA 107328 .......... .......... .......... .......... .......... .......... 174 ATTAGAATTA AGTGATAAAT GAATATATAT TTTGAATATA ATAAATAAGT AAAAATGAAT 107388 .......... .......... .......... .......... .......... .......... 174 CGAGAGAGTA ACAATATATC CAATATAATT CGACAAATGG AACTGTCTAA GGGACGTCAT 107448 .......... .......... .......... .......... .......... .......... 174 GTGTTTGAGG TAGAAATGTT ATTTTTGATA GATCATCACC TTTAGTAAAA TATTTCAAAA 107508 .......... .......... .......... .......... .......... .......... 174 CAACTTTGAA ATGGTTATAC AATAATGTAT AATTCATGTA AAAGAAAACA AAAAAAAAAT 107568 .......... .......... .......... .......... .......... .......... 174 TAATAACAAC AAATATATAA TACAATAAAC GAAACAAAAA AAAATAGCAA GTAATACTAA 107628 .......... .......... .......... .......... .......... .......... 174 TAAAAACTAA ATATATCAAA CTATCTACTA ACTTTCAATT CTAATCCTCG ATCTCCATAT 107688 .......... .......... .......... .......... .......... .......... 174 GTTCGACGGA CTAAAATATT AATCATAAAA TATGTGCAAA AATCATTAAA ATACACATAA 107748 .......... .......... .......... .......... .......... .......... 174 TATGAAACTA TAAAACAAAA GGGATCACTC CAACATTGGT ACGAATCTTT TTGCAACTGG 107808 .......... .......... .......... .......... .......... .......... 174 CCCCCCTTCT TTGTCCTCAT TGATATGTCC ATCATTAAAG CAATCTAATT AATTAATTAA 107868 .......... .......... .......... .......... .......... .......... 174 ACTAAAATAA ATTACAGTCC ACTATCACTG GCCTCTGTAC AGTAATTTCC CTGATTAGTC 107928 .......... .......... .......... .......... .......... .......... 174 AGTTAATAAT TTGTAATTTC CCAGAAAACT TCACTAATTA AAATGGTTAA ACAAAAAAGC 107988 .......... .......... .......... .......... .......... .......... 174 AACGGTCAAG TAAAAAACGG GTATCATGAG ACATGCACGT GCATGGGACG TGACTTCACC 108048 .......... .......... .......... .......... .......... .......... 174 TGCACCCTCT AAAAGAACAA ACAGACAAAA TTAAAAAAAA AAGTTTAATA CATGATCATG 108108 .......... .......... .......... .......... .......... .......... 174 TCTTTTAACT TAATTTCGAA ATATTTTTTT TAACTTTATG CGTGAATAAG TAGATACTTA 108168 .......... .......... .......... .......... .......... .......... 174 AATTTATATA GAATTGAATA AGTAAATTCT ACTTGACGTC CTACGTGATC ATTTGTGTCA 108228 .......... .......... .......... .......... .......... .......... 174 GTGCAGGATT CAGAATTTTC ATTTAGAAAA TTCAAAAAAA AAAAAGTAAT GCTTTTGAAT 108288 .......... .......... .......... .......... .......... .......... 174 ATACAATATA ATTTTTTACT GAGGGCATAC TCTAGGTCCC GCCCTCCCCG GTTTGCGTCT 108348 .......... .......... .......... .......... .......... .......... 174 TACGCTCTTA TTGTATCATA CCAGGTAGAA TGTGTGTGAT TACTTGATCA TTTTTATACA 108408 || || || || | | || |||||| ||| .......... .......... ........AA TGAATGACAT AAATGAGTCT TTTTTAAACA 206 AATTAAAGTA TTTACTTGTA CACGTTTAAA GCTAAAATAT ATAGATAAAA TAAGACAGAT 108468 |||| | | || ||| AATTTGATAA CATATTTGAG .......... .......... .......... .......... 226 AAATTAAAAG TTTTTTTTTT GGTTTGTTAA TTTTATGATA GTTAAAATAA GACAGACAAA 108528 .......... .......... .......... .......... .......... .......... 226 TTAAAATAAG ACAGACAAAT TAAAACGTGA GAAAAAGAAA AATAATTTTT GACACTGTTC 108588 .......... .......... .......... .......... .......... .......... 226 CTTATAATAC CAACTCTCTC TCTCAACGGT TATATTCCTC TGACATATAC CTCAACGGTC 108648 .......... .......... .......... .......... .......... .......... 226 ATATTCTTGT TCCTTTTCCA CCGTCTGATT AAGATCGGAC GGTGATAGAT GGAGGTTCCT 108708 .......... .......... .......... .......... .......... .......... 226 CTCTCCCCTT TCTCCAACAT CATCTTTACC AAGCCATGAT TTGTTTCCCT CTGGAAGTAA 108768 .......... .......... .......... .......... .......... .......... 226 AAAACAAGAA GAGGGCTGTT TCAATCTTGA TATATAAAAT AACACAGTTG TATATGGGGT 108828 .......... .......... .......... .......... .......... .......... 226 TTAACTTTTT TGGGTAGTGG GGCTTTGGGA AGTTACTTCT TTTTCTTCAG TTTTTCTCTG 108888 ||||| ||| .......... .......... .......... .......... .......... TTTTTTTCT- 235 TGGTGATTAT AATGATG 108905 | || ||| ||||||| T-ATGGTTA- AATGATG 250 hqPGS_C08HBa0197J17.1+_SGN-E259955+ (105473 105643,108377 108428,108879 108905) ******************************************************************************** EST sequence 23 +strand 647 n (File: SGN-E255405+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTATGTGGG CTAATTCTCC CATTTATCAA ACATGCAAAA AAAATTA Predicted gene structure (within gDNA segment 104790 to 111316): Exon 1 105473 105643 ( 171 n); cDNA 1 174 ( 174 n); score: 0.854 Intron 1 105644 108376 (2733 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.64) Exon 2 108377 108428 ( 52 n); cDNA 175 226 ( 52 n); score: 0.615 Intron 2 108429 108878 ( 450 n); Pd: 0.000 (s: 0.60), Pa: 0.088 (s: 0) Exon 3 108879 108905 ( 27 n); cDNA 227 250 ( 24 n); score: 0.778 MATCH C08HBa0197J17.1+ SGN-E255405+ 0.798 250 0.386 C PGS_C08HBa0197J17.1+_SGN-E255405+ (105473 105643,108377 108428,108879 108905) Alignment (genomic DNA sequence = upper lines): GTGCATTG-- ACTCAAACTC AATGTCTTAT CCATACAAGG CGTGTTAGGC CA-AATTCTA 105529 |||||| | |||||||||| |||||||||| |||||||||| | |||||| || ||||||| GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 60 AAGGACTTGA ACCCAAT-CC TTATCATCAT GGTGCATCAA AACTCAGATT TGATGTCTTA 105588 |||||||| ||||||| || ||||||| || |||||||||| ||||| || | |||||||||| TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTC-GAAT TGATGTCTTA 119 TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC TCAAATATTT TTCATTATAG 105648 ||||||||| |||||||| || |||||| ||||||| || |||||||||| ||||| CCCTCTTGGT GCGATAGAAC TTGAATCTAC CGTCTTACCC TCAAATATTT TTCAT..... 174 TGCATCCGGA CTTTAACCTG ATGTCTTACC CTTTTGGTGC GATGAAACTT GAATCCATCG 105708 .......... .......... .......... .......... .......... .......... 174 TCTTACCCTT AACCAACGGT ATAATAGACC AAAGTACAAC ATGACTCACC CTTTCAGTCT 105768 .......... .......... .......... .......... .......... .......... 174 TTCAAAACAA TCAAAATAAC ATTCAAACTC ATGCTATTAA AATTTTGTAC CTTCTTCTAT 105828 .......... .......... .......... .......... .......... .......... 174 TTAAGAAGTT TTGTATAGCA TGTTATATTC AACCAATAGT AGTATATGTC TTCGGTTCTT 105888 .......... .......... .......... .......... .......... .......... 174 GATAATTGTT AGTGACTGAA TATTATTTTT ATTCTAAATC ATAAAATATT CTAGAAAATA 105948 .......... .......... .......... .......... .......... .......... 174 CATACCTGAT TTTATGCATA TAATACCTTG ATTCTCATAA CGAGATCAAC CAAAACACGA 106008 .......... .......... .......... .......... .......... .......... 174 GTTAATGAAA AAACTAAAAC TCAATCTTAA TTGGCTAGAG ATTCGTGCTG ATAACGTGTT 106068 .......... .......... .......... .......... .......... .......... 174 ATAAAATCAA GCTCATAAGA ATATAATCAT AAAGAGAAGA AGACAAGAGA AGTAGATAGA 106128 .......... .......... .......... .......... .......... .......... 174 AGAGGAATTT TCTTTCTTAT TCAAGTGTAT TCAAGTCTCA TATGTATCTA TTACAATAGT 106188 .......... .......... .......... .......... .......... .......... 174 GAATGAACAA CCCTATTTAT AGAGTGAGAA ATCACTCTAA ACGTCACCAT ATTAAGTATC 106248 .......... .......... .......... .......... .......... .......... 174 ATAATAAATA GATACATTCT TATCCAAAAA GGTTCATGTA ACCTAGTGAA TATGAATGGT 106308 .......... .......... .......... .......... .......... .......... 174 TGTTCATGTA CCAACCTTAT GGACTATGCA CTCATTCAAT GAATTTATAA CAGAATTCAT 106368 .......... .......... .......... .......... .......... .......... 174 GTTTTAATGT TCTTTTTTTA AAGGATGTGA AACGTTTCAA TAATTCAATT AATTTGAAAT 106428 .......... .......... .......... .......... .......... .......... 174 GAAAAGAGTA TACTTTTTAG TAATCTTAGT TTTATACTAT GTTTTGTTAT ATTATTCTCT 106488 .......... .......... .......... .......... .......... .......... 174 CCACATATAT TAATTATTTC GAATAAATTA ATTGTAGTAA GCGCGATGAT AAAAATGGAT 106548 .......... .......... .......... .......... .......... .......... 174 AAAAGAATAC GTGTCTAGTC ACATATTCAA ACCTAACAAG ATATTTGACC AAATCAATGT 106608 .......... .......... .......... .......... .......... .......... 174 GATGGCAATT GGATTTCACA TGTAATACTG AAATTATAGT ACACTAGAAC TTATCTACCT 106668 .......... .......... .......... .......... .......... .......... 174 ACAACGGCAG CAAAGAGTTG TAGACAACTT TTCTTTTATA GTTGTGACAT TCTAATGAGT 106728 .......... .......... .......... .......... .......... .......... 174 TTGTGTGTAT GTTTGATTAG TTTTAGTATA GGTGTCGAAT AGCTTTATTC ATTAAAGCTA 106788 .......... .......... .......... .......... .......... .......... 174 GGATATATGA GAAGATTATT TAGTAATTTT TGGTTAAAGA TAATTTTTTA TTGGTATGTC 106848 .......... .......... .......... .......... .......... .......... 174 TACACAAATA TTATCGTAAG TGCAAGTTTA ATCTTTATCT TGAGCGCAAG TTTAGTTTTC 106908 .......... .......... .......... .......... .......... .......... 174 TTCTTTAACC AATCACTTTT AATTTTTTAC GAAATTCTAA CTCAGCGATT TGCTTACTTC 106968 .......... .......... .......... .......... .......... .......... 174 AATATTATCT CATCTAAAGT TTTAAATTAT TAAACAATTA TTATTATAGT CTTAAATAAA 107028 .......... .......... .......... .......... .......... .......... 174 GGTAACTAAC ATTGTGTGCA TTTATTAATA CAACAATCGT TTTTGGCAAG TTGAATTTAT 107088 .......... .......... .......... .......... .......... .......... 174 CTCAAATAAT TAAGATTTTA GAAGGAAAAA AGGAGGTCAT TTATTTCCAT TTTTGCTATG 107148 .......... .......... .......... .......... .......... .......... 174 TAGTTGAACG TTCACATACT CTTGTGACCG GGGTACTAAA TATTTTTCTT AATATACAAA 107208 .......... .......... .......... .......... .......... .......... 174 TTCTTCCATT CATTTTTTCT TATTTAATTT TGATTTACGT ACCTCTGATA ATAAATAAAA 107268 .......... .......... .......... .......... .......... .......... 174 TAATATTTTA TAATTCAAAA AATATAACAA AAAAATAACT TTAGTTAATA GTAAGGATAA 107328 .......... .......... .......... .......... .......... .......... 174 ATTAGAATTA AGTGATAAAT GAATATATAT TTTGAATATA ATAAATAAGT AAAAATGAAT 107388 .......... .......... .......... .......... .......... .......... 174 CGAGAGAGTA ACAATATATC CAATATAATT CGACAAATGG AACTGTCTAA GGGACGTCAT 107448 .......... .......... .......... .......... .......... .......... 174 GTGTTTGAGG TAGAAATGTT ATTTTTGATA GATCATCACC TTTAGTAAAA TATTTCAAAA 107508 .......... .......... .......... .......... .......... .......... 174 CAACTTTGAA ATGGTTATAC AATAATGTAT AATTCATGTA AAAGAAAACA AAAAAAAAAT 107568 .......... .......... .......... .......... .......... .......... 174 TAATAACAAC AAATATATAA TACAATAAAC GAAACAAAAA AAAATAGCAA GTAATACTAA 107628 .......... .......... .......... .......... .......... .......... 174 TAAAAACTAA ATATATCAAA CTATCTACTA ACTTTCAATT CTAATCCTCG ATCTCCATAT 107688 .......... .......... .......... .......... .......... .......... 174 GTTCGACGGA CTAAAATATT AATCATAAAA TATGTGCAAA AATCATTAAA ATACACATAA 107748 .......... .......... .......... .......... .......... .......... 174 TATGAAACTA TAAAACAAAA GGGATCACTC CAACATTGGT ACGAATCTTT TTGCAACTGG 107808 .......... .......... .......... .......... .......... .......... 174 CCCCCCTTCT TTGTCCTCAT TGATATGTCC ATCATTAAAG CAATCTAATT AATTAATTAA 107868 .......... .......... .......... .......... .......... .......... 174 ACTAAAATAA ATTACAGTCC ACTATCACTG GCCTCTGTAC AGTAATTTCC CTGATTAGTC 107928 .......... .......... .......... .......... .......... .......... 174 AGTTAATAAT TTGTAATTTC CCAGAAAACT TCACTAATTA AAATGGTTAA ACAAAAAAGC 107988 .......... .......... .......... .......... .......... .......... 174 AACGGTCAAG TAAAAAACGG GTATCATGAG ACATGCACGT GCATGGGACG TGACTTCACC 108048 .......... .......... .......... .......... .......... .......... 174 TGCACCCTCT AAAAGAACAA ACAGACAAAA TTAAAAAAAA AAGTTTAATA CATGATCATG 108108 .......... .......... .......... .......... .......... .......... 174 TCTTTTAACT TAATTTCGAA ATATTTTTTT TAACTTTATG CGTGAATAAG TAGATACTTA 108168 .......... .......... .......... .......... .......... .......... 174 AATTTATATA GAATTGAATA AGTAAATTCT ACTTGACGTC CTACGTGATC ATTTGTGTCA 108228 .......... .......... .......... .......... .......... .......... 174 GTGCAGGATT CAGAATTTTC ATTTAGAAAA TTCAAAAAAA AAAAAGTAAT GCTTTTGAAT 108288 .......... .......... .......... .......... .......... .......... 174 ATACAATATA ATTTTTTACT GAGGGCATAC TCTAGGTCCC GCCCTCCCCG GTTTGCGTCT 108348 .......... .......... .......... .......... .......... .......... 174 TACGCTCTTA TTGTATCATA CCAGGTAGAA TGTGTGTGAT TACTTGATCA TTTTTATACA 108408 || || || || | | || |||||| ||| .......... .......... ........AA TGAATGACAT AAATGAGTCT TTTTTAAACA 206 AATTAAAGTA TTTACTTGTA CACGTTTAAA GCTAAAATAT ATAGATAAAA TAAGACAGAT 108468 |||| | | || ||| AATTTGATAA CATATTTGAG .......... .......... .......... .......... 226 AAATTAAAAG TTTTTTTTTT GGTTTGTTAA TTTTATGATA GTTAAAATAA GACAGACAAA 108528 .......... .......... .......... .......... .......... .......... 226 TTAAAATAAG ACAGACAAAT TAAAACGTGA GAAAAAGAAA AATAATTTTT GACACTGTTC 108588 .......... .......... .......... .......... .......... .......... 226 CTTATAATAC CAACTCTCTC TCTCAACGGT TATATTCCTC TGACATATAC CTCAACGGTC 108648 .......... .......... .......... .......... .......... .......... 226 ATATTCTTGT TCCTTTTCCA CCGTCTGATT AAGATCGGAC GGTGATAGAT GGAGGTTCCT 108708 .......... .......... .......... .......... .......... .......... 226 CTCTCCCCTT TCTCCAACAT CATCTTTACC AAGCCATGAT TTGTTTCCCT CTGGAAGTAA 108768 .......... .......... .......... .......... .......... .......... 226 AAAACAAGAA GAGGGCTGTT TCAATCTTGA TATATAAAAT AACACAGTTG TATATGGGGT 108828 .......... .......... .......... .......... .......... .......... 226 TTAACTTTTT TGGGTAGTGG GGCTTTGGGA AGTTACTTCT TTTTCTTCAG TTTTTCTCTG 108888 ||||| ||| .......... .......... .......... .......... .......... TTTTTTTCT- 235 TGGTGATTAT AATGATG 108905 | || ||| ||||||| T-ATGGTTA- AATGATG 250 hqPGS_C08HBa0197J17.1+_SGN-E255405+ (105473 105643,108377 108428,108879 108905) ******************************************************************************** EST sequence 40 +strand 584 n (File: SGN-E256408+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATA Predicted gene structure (within gDNA segment 104790 to 110686): Exon 1 105473 105643 ( 171 n); cDNA 1 174 ( 174 n); score: 0.854 Intron 1 105644 108376 (2733 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.64) Exon 2 108377 108428 ( 52 n); cDNA 175 226 ( 52 n); score: 0.615 Intron 2 108429 108878 ( 450 n); Pd: 0.000 (s: 0.60), Pa: 0.088 (s: 0) Exon 3 108879 108905 ( 27 n); cDNA 227 250 ( 24 n); score: 0.778 MATCH C08HBa0197J17.1+ SGN-E256408+ 0.798 250 0.428 C PGS_C08HBa0197J17.1+_SGN-E256408+ (105473 105643,108377 108428,108879 108905) Alignment (genomic DNA sequence = upper lines): GTGCATTG-- ACTCAAACTC AATGTCTTAT CCATACAAGG CGTGTTAGGC CA-AATTCTA 105529 |||||| | |||||||||| |||||||||| |||||||||| | |||||| || ||||||| GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 60 AAGGACTTGA ACCCAAT-CC TTATCATCAT GGTGCATCAA AACTCAGATT TGATGTCTTA 105588 |||||||| ||||||| || ||||||| || |||||||||| ||||| || | |||||||||| TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTC-GAAT TGATGTCTTA 119 TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC TCAAATATTT TTCATTATAG 105648 ||||||||| |||||||| || |||||| ||||||| || |||||||||| ||||| CCCTCTTGGT GCGATAGAAC TTGAATCTAC CGTCTTACCC TCAAATATTT TTCAT..... 174 TGCATCCGGA CTTTAACCTG ATGTCTTACC CTTTTGGTGC GATGAAACTT GAATCCATCG 105708 .......... .......... .......... .......... .......... .......... 174 TCTTACCCTT AACCAACGGT ATAATAGACC AAAGTACAAC ATGACTCACC CTTTCAGTCT 105768 .......... .......... .......... .......... .......... .......... 174 TTCAAAACAA TCAAAATAAC ATTCAAACTC ATGCTATTAA AATTTTGTAC CTTCTTCTAT 105828 .......... .......... .......... .......... .......... .......... 174 TTAAGAAGTT TTGTATAGCA TGTTATATTC AACCAATAGT AGTATATGTC TTCGGTTCTT 105888 .......... .......... .......... .......... .......... .......... 174 GATAATTGTT AGTGACTGAA TATTATTTTT ATTCTAAATC ATAAAATATT CTAGAAAATA 105948 .......... .......... .......... .......... .......... .......... 174 CATACCTGAT TTTATGCATA TAATACCTTG ATTCTCATAA CGAGATCAAC CAAAACACGA 106008 .......... .......... .......... .......... .......... .......... 174 GTTAATGAAA AAACTAAAAC TCAATCTTAA TTGGCTAGAG ATTCGTGCTG ATAACGTGTT 106068 .......... .......... .......... .......... .......... .......... 174 ATAAAATCAA GCTCATAAGA ATATAATCAT AAAGAGAAGA AGACAAGAGA AGTAGATAGA 106128 .......... .......... .......... .......... .......... .......... 174 AGAGGAATTT TCTTTCTTAT TCAAGTGTAT TCAAGTCTCA TATGTATCTA TTACAATAGT 106188 .......... .......... .......... .......... .......... .......... 174 GAATGAACAA CCCTATTTAT AGAGTGAGAA ATCACTCTAA ACGTCACCAT ATTAAGTATC 106248 .......... .......... .......... .......... .......... .......... 174 ATAATAAATA GATACATTCT TATCCAAAAA GGTTCATGTA ACCTAGTGAA TATGAATGGT 106308 .......... .......... .......... .......... .......... .......... 174 TGTTCATGTA CCAACCTTAT GGACTATGCA CTCATTCAAT GAATTTATAA CAGAATTCAT 106368 .......... .......... .......... .......... .......... .......... 174 GTTTTAATGT TCTTTTTTTA AAGGATGTGA AACGTTTCAA TAATTCAATT AATTTGAAAT 106428 .......... .......... .......... .......... .......... .......... 174 GAAAAGAGTA TACTTTTTAG TAATCTTAGT TTTATACTAT GTTTTGTTAT ATTATTCTCT 106488 .......... .......... .......... .......... .......... .......... 174 CCACATATAT TAATTATTTC GAATAAATTA ATTGTAGTAA GCGCGATGAT AAAAATGGAT 106548 .......... .......... .......... .......... .......... .......... 174 AAAAGAATAC GTGTCTAGTC ACATATTCAA ACCTAACAAG ATATTTGACC AAATCAATGT 106608 .......... .......... .......... .......... .......... .......... 174 GATGGCAATT GGATTTCACA TGTAATACTG AAATTATAGT ACACTAGAAC TTATCTACCT 106668 .......... .......... .......... .......... .......... .......... 174 ACAACGGCAG CAAAGAGTTG TAGACAACTT TTCTTTTATA GTTGTGACAT TCTAATGAGT 106728 .......... .......... .......... .......... .......... .......... 174 TTGTGTGTAT GTTTGATTAG TTTTAGTATA GGTGTCGAAT AGCTTTATTC ATTAAAGCTA 106788 .......... .......... .......... .......... .......... .......... 174 GGATATATGA GAAGATTATT TAGTAATTTT TGGTTAAAGA TAATTTTTTA TTGGTATGTC 106848 .......... .......... .......... .......... .......... .......... 174 TACACAAATA TTATCGTAAG TGCAAGTTTA ATCTTTATCT TGAGCGCAAG TTTAGTTTTC 106908 .......... .......... .......... .......... .......... .......... 174 TTCTTTAACC AATCACTTTT AATTTTTTAC GAAATTCTAA CTCAGCGATT TGCTTACTTC 106968 .......... .......... .......... .......... .......... .......... 174 AATATTATCT CATCTAAAGT TTTAAATTAT TAAACAATTA TTATTATAGT CTTAAATAAA 107028 .......... .......... .......... .......... .......... .......... 174 GGTAACTAAC ATTGTGTGCA TTTATTAATA CAACAATCGT TTTTGGCAAG TTGAATTTAT 107088 .......... .......... .......... .......... .......... .......... 174 CTCAAATAAT TAAGATTTTA GAAGGAAAAA AGGAGGTCAT TTATTTCCAT TTTTGCTATG 107148 .......... .......... .......... .......... .......... .......... 174 TAGTTGAACG TTCACATACT CTTGTGACCG GGGTACTAAA TATTTTTCTT AATATACAAA 107208 .......... .......... .......... .......... .......... .......... 174 TTCTTCCATT CATTTTTTCT TATTTAATTT TGATTTACGT ACCTCTGATA ATAAATAAAA 107268 .......... .......... .......... .......... .......... .......... 174 TAATATTTTA TAATTCAAAA AATATAACAA AAAAATAACT TTAGTTAATA GTAAGGATAA 107328 .......... .......... .......... .......... .......... .......... 174 ATTAGAATTA AGTGATAAAT GAATATATAT TTTGAATATA ATAAATAAGT AAAAATGAAT 107388 .......... .......... .......... .......... .......... .......... 174 CGAGAGAGTA ACAATATATC CAATATAATT CGACAAATGG AACTGTCTAA GGGACGTCAT 107448 .......... .......... .......... .......... .......... .......... 174 GTGTTTGAGG TAGAAATGTT ATTTTTGATA GATCATCACC TTTAGTAAAA TATTTCAAAA 107508 .......... .......... .......... .......... .......... .......... 174 CAACTTTGAA ATGGTTATAC AATAATGTAT AATTCATGTA AAAGAAAACA AAAAAAAAAT 107568 .......... .......... .......... .......... .......... .......... 174 TAATAACAAC AAATATATAA TACAATAAAC GAAACAAAAA AAAATAGCAA GTAATACTAA 107628 .......... .......... .......... .......... .......... .......... 174 TAAAAACTAA ATATATCAAA CTATCTACTA ACTTTCAATT CTAATCCTCG ATCTCCATAT 107688 .......... .......... .......... .......... .......... .......... 174 GTTCGACGGA CTAAAATATT AATCATAAAA TATGTGCAAA AATCATTAAA ATACACATAA 107748 .......... .......... .......... .......... .......... .......... 174 TATGAAACTA TAAAACAAAA GGGATCACTC CAACATTGGT ACGAATCTTT TTGCAACTGG 107808 .......... .......... .......... .......... .......... .......... 174 CCCCCCTTCT TTGTCCTCAT TGATATGTCC ATCATTAAAG CAATCTAATT AATTAATTAA 107868 .......... .......... .......... .......... .......... .......... 174 ACTAAAATAA ATTACAGTCC ACTATCACTG GCCTCTGTAC AGTAATTTCC CTGATTAGTC 107928 .......... .......... .......... .......... .......... .......... 174 AGTTAATAAT TTGTAATTTC CCAGAAAACT TCACTAATTA AAATGGTTAA ACAAAAAAGC 107988 .......... .......... .......... .......... .......... .......... 174 AACGGTCAAG TAAAAAACGG GTATCATGAG ACATGCACGT GCATGGGACG TGACTTCACC 108048 .......... .......... .......... .......... .......... .......... 174 TGCACCCTCT AAAAGAACAA ACAGACAAAA TTAAAAAAAA AAGTTTAATA CATGATCATG 108108 .......... .......... .......... .......... .......... .......... 174 TCTTTTAACT TAATTTCGAA ATATTTTTTT TAACTTTATG CGTGAATAAG TAGATACTTA 108168 .......... .......... .......... .......... .......... .......... 174 AATTTATATA GAATTGAATA AGTAAATTCT ACTTGACGTC CTACGTGATC ATTTGTGTCA 108228 .......... .......... .......... .......... .......... .......... 174 GTGCAGGATT CAGAATTTTC ATTTAGAAAA TTCAAAAAAA AAAAAGTAAT GCTTTTGAAT 108288 .......... .......... .......... .......... .......... .......... 174 ATACAATATA ATTTTTTACT GAGGGCATAC TCTAGGTCCC GCCCTCCCCG GTTTGCGTCT 108348 .......... .......... .......... .......... .......... .......... 174 TACGCTCTTA TTGTATCATA CCAGGTAGAA TGTGTGTGAT TACTTGATCA TTTTTATACA 108408 || || || || | | || |||||| ||| .......... .......... ........AA TGAATGACAT AAATGAGTCT TTTTTAAACA 206 AATTAAAGTA TTTACTTGTA CACGTTTAAA GCTAAAATAT ATAGATAAAA TAAGACAGAT 108468 |||| | | || ||| AATTTGATAA CATATTTGAG .......... .......... .......... .......... 226 AAATTAAAAG TTTTTTTTTT GGTTTGTTAA TTTTATGATA GTTAAAATAA GACAGACAAA 108528 .......... .......... .......... .......... .......... .......... 226 TTAAAATAAG ACAGACAAAT TAAAACGTGA GAAAAAGAAA AATAATTTTT GACACTGTTC 108588 .......... .......... .......... .......... .......... .......... 226 CTTATAATAC CAACTCTCTC TCTCAACGGT TATATTCCTC TGACATATAC CTCAACGGTC 108648 .......... .......... .......... .......... .......... .......... 226 ATATTCTTGT TCCTTTTCCA CCGTCTGATT AAGATCGGAC GGTGATAGAT GGAGGTTCCT 108708 .......... .......... .......... .......... .......... .......... 226 CTCTCCCCTT TCTCCAACAT CATCTTTACC AAGCCATGAT TTGTTTCCCT CTGGAAGTAA 108768 .......... .......... .......... .......... .......... .......... 226 AAAACAAGAA GAGGGCTGTT TCAATCTTGA TATATAAAAT AACACAGTTG TATATGGGGT 108828 .......... .......... .......... .......... .......... .......... 226 TTAACTTTTT TGGGTAGTGG GGCTTTGGGA AGTTACTTCT TTTTCTTCAG TTTTTCTCTG 108888 ||||| ||| .......... .......... .......... .......... .......... TTTTTTTCT- 235 TGGTGATTAT AATGATG 108905 | || ||| ||||||| T-ATGGTTA- AATGATG 250 hqPGS_C08HBa0197J17.1+_SGN-E256408+ (105473 105643,108377 108428,108879 108905) ******************************************************************************** EST sequence 29 +strand 608 n (File: SGN-E251501+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAAAAG AGCTATTGAT GACCTCGATT 601 TCGTCATA Predicted gene structure (within gDNA segment 104860 to 110996): Exon 1 105480 105643 ( 164 n); cDNA 3 167 ( 165 n); score: 0.884 Intron 1 105644 108376 (2733 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.64) Exon 2 108377 108428 ( 52 n); cDNA 168 219 ( 52 n); score: 0.615 Intron 2 108429 108878 ( 450 n); Pd: 0.000 (s: 0.60), Pa: 0.088 (s: 0) Exon 3 108879 108905 ( 27 n); cDNA 220 243 ( 24 n); score: 0.778 MATCH C08HBa0197J17.1+ SGN-E251501+ 0.819 243 0.400 C PGS_C08HBa0197J17.1+_SGN-E251501+ (105480 105643,108377 108428,108879 108905) Alignment (genomic DNA sequence = upper lines): GACTCAAACT CAATGTCTTA TCCATACAAG GCGTGTTAGG CCA-AATTCT AAAGGACTTG 105538 |||||||||| |||||||||| |||||||||| || ||||| ||| |||||| | ||||||| GACTCAAACT CAATGTCTTA TCCATACAAG GCACATTAGG CCATAATTCT ATGGGACTTG 62 AACCCAAT-C CTTATCATCA TGGTGCATCA AAACTCAGAT TTGATGTCTT ATCCTCTTGG 105597 |||||||| | |||||||| | |||||||||| |||||| || |||||||||| | |||||||| AACCCAATAC CTTATCATTA TGGTGCATCA AAACTC-GAA TTGATGTCTT ACCCTCTTGG 121 TGCGATAGAT TTTAAATCTA TCGTCTTATC CTCAAATATT TTTCATTATA GTGCATCCGG 105657 ||||||||| || |||||| ||||||| | |||||||||| |||||| TGCGATAGAA CTTGAATCTA CCGTCTTACC CTCAAATATT TTTCAT.... .......... 167 ACTTTAACCT GATGTCTTAC CCTTTTGGTG CGATGAAACT TGAATCCATC GTCTTACCCT 105717 .......... .......... .......... .......... .......... .......... 167 TAACCAACGG TATAATAGAC CAAAGTACAA CATGACTCAC CCTTTCAGTC TTTCAAAACA 105777 .......... .......... .......... .......... .......... .......... 167 ATCAAAATAA CATTCAAACT CATGCTATTA AAATTTTGTA CCTTCTTCTA TTTAAGAAGT 105837 .......... .......... .......... .......... .......... .......... 167 TTTGTATAGC ATGTTATATT CAACCAATAG TAGTATATGT CTTCGGTTCT TGATAATTGT 105897 .......... .......... .......... .......... .......... .......... 167 TAGTGACTGA ATATTATTTT TATTCTAAAT CATAAAATAT TCTAGAAAAT ACATACCTGA 105957 .......... .......... .......... .......... .......... .......... 167 TTTTATGCAT ATAATACCTT GATTCTCATA ACGAGATCAA CCAAAACACG AGTTAATGAA 106017 .......... .......... .......... .......... .......... .......... 167 AAAACTAAAA CTCAATCTTA ATTGGCTAGA GATTCGTGCT GATAACGTGT TATAAAATCA 106077 .......... .......... .......... .......... .......... .......... 167 AGCTCATAAG AATATAATCA TAAAGAGAAG AAGACAAGAG AAGTAGATAG AAGAGGAATT 106137 .......... .......... .......... .......... .......... .......... 167 TTCTTTCTTA TTCAAGTGTA TTCAAGTCTC ATATGTATCT ATTACAATAG TGAATGAACA 106197 .......... .......... .......... .......... .......... .......... 167 ACCCTATTTA TAGAGTGAGA AATCACTCTA AACGTCACCA TATTAAGTAT CATAATAAAT 106257 .......... .......... .......... .......... .......... .......... 167 AGATACATTC TTATCCAAAA AGGTTCATGT AACCTAGTGA ATATGAATGG TTGTTCATGT 106317 .......... .......... .......... .......... .......... .......... 167 ACCAACCTTA TGGACTATGC ACTCATTCAA TGAATTTATA ACAGAATTCA TGTTTTAATG 106377 .......... .......... .......... .......... .......... .......... 167 TTCTTTTTTT AAAGGATGTG AAACGTTTCA ATAATTCAAT TAATTTGAAA TGAAAAGAGT 106437 .......... .......... .......... .......... .......... .......... 167 ATACTTTTTA GTAATCTTAG TTTTATACTA TGTTTTGTTA TATTATTCTC TCCACATATA 106497 .......... .......... .......... .......... .......... .......... 167 TTAATTATTT CGAATAAATT AATTGTAGTA AGCGCGATGA TAAAAATGGA TAAAAGAATA 106557 .......... .......... .......... .......... .......... .......... 167 CGTGTCTAGT CACATATTCA AACCTAACAA GATATTTGAC CAAATCAATG TGATGGCAAT 106617 .......... .......... .......... .......... .......... .......... 167 TGGATTTCAC ATGTAATACT GAAATTATAG TACACTAGAA CTTATCTACC TACAACGGCA 106677 .......... .......... .......... .......... .......... .......... 167 GCAAAGAGTT GTAGACAACT TTTCTTTTAT AGTTGTGACA TTCTAATGAG TTTGTGTGTA 106737 .......... .......... .......... .......... .......... .......... 167 TGTTTGATTA GTTTTAGTAT AGGTGTCGAA TAGCTTTATT CATTAAAGCT AGGATATATG 106797 .......... .......... .......... .......... .......... .......... 167 AGAAGATTAT TTAGTAATTT TTGGTTAAAG ATAATTTTTT ATTGGTATGT CTACACAAAT 106857 .......... .......... .......... .......... .......... .......... 167 ATTATCGTAA GTGCAAGTTT AATCTTTATC TTGAGCGCAA GTTTAGTTTT CTTCTTTAAC 106917 .......... .......... .......... .......... .......... .......... 167 CAATCACTTT TAATTTTTTA CGAAATTCTA ACTCAGCGAT TTGCTTACTT CAATATTATC 106977 .......... .......... .......... .......... .......... .......... 167 TCATCTAAAG TTTTAAATTA TTAAACAATT ATTATTATAG TCTTAAATAA AGGTAACTAA 107037 .......... .......... .......... .......... .......... .......... 167 CATTGTGTGC ATTTATTAAT ACAACAATCG TTTTTGGCAA GTTGAATTTA TCTCAAATAA 107097 .......... .......... .......... .......... .......... .......... 167 TTAAGATTTT AGAAGGAAAA AAGGAGGTCA TTTATTTCCA TTTTTGCTAT GTAGTTGAAC 107157 .......... .......... .......... .......... .......... .......... 167 GTTCACATAC TCTTGTGACC GGGGTACTAA ATATTTTTCT TAATATACAA ATTCTTCCAT 107217 .......... .......... .......... .......... .......... .......... 167 TCATTTTTTC TTATTTAATT TTGATTTACG TACCTCTGAT AATAAATAAA ATAATATTTT 107277 .......... .......... .......... .......... .......... .......... 167 ATAATTCAAA AAATATAACA AAAAAATAAC TTTAGTTAAT AGTAAGGATA AATTAGAATT 107337 .......... .......... .......... .......... .......... .......... 167 AAGTGATAAA TGAATATATA TTTTGAATAT AATAAATAAG TAAAAATGAA TCGAGAGAGT 107397 .......... .......... .......... .......... .......... .......... 167 AACAATATAT CCAATATAAT TCGACAAATG GAACTGTCTA AGGGACGTCA TGTGTTTGAG 107457 .......... .......... .......... .......... .......... .......... 167 GTAGAAATGT TATTTTTGAT AGATCATCAC CTTTAGTAAA ATATTTCAAA ACAACTTTGA 107517 .......... .......... .......... .......... .......... .......... 167 AATGGTTATA CAATAATGTA TAATTCATGT AAAAGAAAAC AAAAAAAAAA TTAATAACAA 107577 .......... .......... .......... .......... .......... .......... 167 CAAATATATA ATACAATAAA CGAAACAAAA AAAAATAGCA AGTAATACTA ATAAAAACTA 107637 .......... .......... .......... .......... .......... .......... 167 AATATATCAA ACTATCTACT AACTTTCAAT TCTAATCCTC GATCTCCATA TGTTCGACGG 107697 .......... .......... .......... .......... .......... .......... 167 ACTAAAATAT TAATCATAAA ATATGTGCAA AAATCATTAA AATACACATA ATATGAAACT 107757 .......... .......... .......... .......... .......... .......... 167 ATAAAACAAA AGGGATCACT CCAACATTGG TACGAATCTT TTTGCAACTG GCCCCCCTTC 107817 .......... .......... .......... .......... .......... .......... 167 TTTGTCCTCA TTGATATGTC CATCATTAAA GCAATCTAAT TAATTAATTA AACTAAAATA 107877 .......... .......... .......... .......... .......... .......... 167 AATTACAGTC CACTATCACT GGCCTCTGTA CAGTAATTTC CCTGATTAGT CAGTTAATAA 107937 .......... .......... .......... .......... .......... .......... 167 TTTGTAATTT CCCAGAAAAC TTCACTAATT AAAATGGTTA AACAAAAAAG CAACGGTCAA 107997 .......... .......... .......... .......... .......... .......... 167 GTAAAAAACG GGTATCATGA GACATGCACG TGCATGGGAC GTGACTTCAC CTGCACCCTC 108057 .......... .......... .......... .......... .......... .......... 167 TAAAAGAACA AACAGACAAA ATTAAAAAAA AAAGTTTAAT ACATGATCAT GTCTTTTAAC 108117 .......... .......... .......... .......... .......... .......... 167 TTAATTTCGA AATATTTTTT TTAACTTTAT GCGTGAATAA GTAGATACTT AAATTTATAT 108177 .......... .......... .......... .......... .......... .......... 167 AGAATTGAAT AAGTAAATTC TACTTGACGT CCTACGTGAT CATTTGTGTC AGTGCAGGAT 108237 .......... .......... .......... .......... .......... .......... 167 TCAGAATTTT CATTTAGAAA ATTCAAAAAA AAAAAAGTAA TGCTTTTGAA TATACAATAT 108297 .......... .......... .......... .......... .......... .......... 167 AATTTTTTAC TGAGGGCATA CTCTAGGTCC CGCCCTCCCC GGTTTGCGTC TTACGCTCTT 108357 .......... .......... .......... .......... .......... .......... 167 ATTGTATCAT ACCAGGTAGA ATGTGTGTGA TTACTTGATC ATTTTTATAC AAATTAAAGT 108417 | ||| || | | | | || |||||| || ||||| | .......... .........A ATGAATGACA TAAATGAGTC TTTTTTAAAC AAATTTGATA 208 ATTTACTTGT ACACGTTTAA AGCTAAAATA TATAGATAAA ATAAGACAGA TAAATTAAAA 108477 | || ||| ACATATTTGA G......... .......... .......... .......... .......... 219 GTTTTTTTTT TGGTTTGTTA ATTTTATGAT AGTTAAAATA AGACAGACAA ATTAAAATAA 108537 .......... .......... .......... .......... .......... .......... 219 GACAGACAAA TTAAAACGTG AGAAAAAGAA AAATAATTTT TGACACTGTT CCTTATAATA 108597 .......... .......... .......... .......... .......... .......... 219 CCAACTCTCT CTCTCAACGG TTATATTCCT CTGACATATA CCTCAACGGT CATATTCTTG 108657 .......... .......... .......... .......... .......... .......... 219 TTCCTTTTCC ACCGTCTGAT TAAGATCGGA CGGTGATAGA TGGAGGTTCC TCTCTCCCCT 108717 .......... .......... .......... .......... .......... .......... 219 TTCTCCAACA TCATCTTTAC CAAGCCATGA TTTGTTTCCC TCTGGAAGTA AAAAACAAGA 108777 .......... .......... .......... .......... .......... .......... 219 AGAGGGCTGT TTCAATCTTG ATATATAAAA TAACACAGTT GTATATGGGG TTTAACTTTT 108837 .......... .......... .......... .......... .......... .......... 219 TTGGGTAGTG GGGCTTTGGG AAGTTACTTC TTTTTCTTCA GTTTTTCTCT GTGGTGATTA 108897 ||||| ||| | || ||| .......... .......... .......... .......... .TTTTTTTCT -T-ATGGTTA 236 TAATGATG 108905 ||||||| -AATGATG 243 hqPGS_C08HBa0197J17.1+_SGN-E251501+ (105480 105643,108377 108428,108879 108905) ******************************************************************************** EST sequence 43 +strand 676 n (File: SGN-E542836+) 1 TTTTTTTTTT TTCAAACCTT CTATAGAGGT GAGTTGTGAC ATATATCCAA CCCATAATGA 61 TTTTATCACA TCTGGACCCA TTCTCTTATA GAATGGTCGA GCATTCACGA TACTCATTAC 121 AAGTCACATT CTCTTCAAAG ATTGGACTAA TTATTCATAT GTACTTTATA AATTTGCATT 181 ATAAGCACAT TGTCATGACT TTAAAATTCA TCATATTTCC ATGACACACC TCAACATCAC 241 TTTGAAAGAT AAAGTGTACC ATCACTTTAT CTTCTTATAT CATGATAGAG GATTTATAAA 301 CTTGTCAAGT TATTGGGTTG ACAACATTCA CAAGTCTAAT GACTTTTCAT ACCATTTTCA 361 TAATAAAAAT TGTCTTCACA TTTTGAAGGA CTATTTGAAG AACTCATATT GTTATTCCTT 421 TTATCATTAC CACAATGATG ACTATTATAA TTCTGTCCTT CCACGCCTTT ATTCATATCA 481 TTAATTATTT GTCATCTTTC AGACTAATCA TTCACTGCTA CCACATTCAT ATGATTGAAT 541 GGAGCAAGTC AACAGGCGGA TTTCAGAGTT ATCACATGTT GCTACCACAT TCTTTTCAAG 601 GAATGGAGCA AATTCAATAT GATGAATTTT CAGACATTTT CATCAAAAAT ATAATGATTT 661 TCTTAGTCAT CATTTT Predicted gene structure (within gDNA segment 103857 to 106668): Exon 1 104803 105426 ( 624 n); cDNA 5 629 ( 625 n); score: 0.913 MATCH C08HBa0197J17.1+ SGN-E542836+ 0.913 624 0.923 C PGS_C08HBa0197J17.1+_SGN-E542836+ (104803 105426) Alignment (genomic DNA sequence = upper lines): TTTTTTCTCA AACCTTCCAT AGAGGTGAGT TGTAACATAT ATCCAACCCA TAATGATTTT 104862 |||||| ||| ||||||| || |||||||||| ||| |||||| |||||||||| |||||||||| TTTTTTTTCA AACCTTCTAT AGAGGTGAGT TGTGACATAT ATCCAACCCA TAATGATTTT 64 ATCATATCTG GACCCATTCT CATATAGAAT GGTCGAGCAT TCACCATACT CATCACAAGT 104922 |||| ||||| |||||||||| | |||||||| |||||||||| |||| ||||| ||| |||||| ATCACATCTG GACCCATTCT CTTATAGAAT GGTCGAGCAT TCACGATACT CATTACAAGT 124 CACATTCTCT TCAAGGAATG GACTAATTAT TTATTTGTAT TTCATAAATT TGCATTATAA 104982 |||||||||| |||| || || |||||||||| | || |||| || ||||||| |||||||||| CACATTCTCT TCAAAGATTG GACTAATTAT TCATATGTAC TTTATAAATT TGCATTATAA 184 GCACATTGTC ATGGCTTTAA AATTCATCAT ATTTCCATGA CACACCTCAA CATCACTTTT 105042 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| GCACATTGTC ATGACTTTAA AATTCATCAT ATTTCCATGA CACACCTCAA CATCACTTTG 244 AAAGATTAAG TGTACCATCA CTTTATCTTC TTGTATCATG ATAGAGGATT TATAAACTTG 105102 |||||| ||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AAAGATAAAG TGTACCATCA CTTTATCTTC TTATATCATG ATAGAGGATT TATAAACTTG 304 TCAAATTATT GGGTCGACAA CATTCACAAG TCCAATGTCC TTTCATACCA TTTTGATAAT 105162 |||| ||||| |||| ||||| |||||||||| || |||| | |||||||||| |||| ||||| TCAAGTTATT GGGTTGACAA CATTCACAAG TCTAATGACT TTTCATACCA TTTTCATAAT 364 GAAAACTGTC TTCACATTTT GAAGGACTAT TTGGAGAACC CATAGTGTTC TTCCTTTTAT 105222 |||| |||| |||||||||| |||||||||| ||| ||||| |||| |||| |||||||||| AAAAATTGTC TTCACATTTT GAAGGACTAT TTGAAGAACT CATATTGTTA TTCCTTTTAT 424 ATTTACCACA ATGATGACTA TTATAATTCC GTCCCTTCAT GCCCTTTTTC ATATCGCTAA 105282 |||||||| |||||||||| ||||||||| |||| | || ||| || ||| ||||| ||| CATTACCACA ATGATGACTA TTATAATTCT GTCCTTCCAC GCCTTTATTC ATATCATTAA 484 TCATTTGTCA TCTTTCAGAC TAATTATTTA CTGCTACCAC ATTCATACGA TAGAATAGAG 105342 | |||||||| |||||||||| |||| ||| | |||||||||| ||||||| || | |||| ||| TTATTTGTCA TCTTTCAGAC TAATCATTCA CTGCTACCAC ATTCATATGA TTGAATGGAG 544 CAAGTCAGCA -TCGGATTTC AAAGTTATCA TATGTTGCTA CCACATTCTT TTCAAGGAAT 105401 ||||||| || |||||||| | |||||||| ||||||||| |||||||||| |||||||||| CAAGTCAACA GGCGGATTTC AGAGTTATCA CATGTTGCTA CCACATTCTT TTCAAGGAAT 604 GGAGCAAGTT CAATATGACA AATTT 105426 ||||||| || |||||||| ||||| GGAGCAAATT CAATATGATG AATTT 629 hqPGS_C08HBa0197J17.1+_SGN-E542836+ (104803 105426) ******************************************************************************** EST sequence 22 +strand 314 n (File: SGN-E254688+) 1 GAATGGAGCA AATTTAATAT GATGAATTTC AATACGTTTC ATCAAAAATG TATTATTTTG 61 CCTCAGTCAT CATCTTATCA TCAATTTGGT GCATGGAGAC TCAAACTCAA TGTCTTATCC 121 ATACAAGGCA CATTAGGCCA TAATTCTATG GGACTTGAAC CCAATACCTT ATCATTATGG 181 TGCATCAAAA CTCGAATTGA TGTCTTACCC TCTTGGTGCG ATAGAACTTG AATCTACCGT 241 CTTACCCTCA AATATTTTTC ATAATGAATG ACATAAATGA GTCTTTTTTA AACAAATTTG 301 ATAACATATT TGAG Predicted gene structure (within gDNA segment 103910 to 107106): Exon 1 105446 105646 ( 201 n); cDNA 62 265 ( 204 n); score: 0.841 MATCH C08HBa0197J17.1+ SGN-E254688+ 0.841 201 0.640 C PGS_C08HBa0197J17.1+_SGN-E254688+ (105446 105646) Alignment (genomic DNA sequence = upper lines): CTTAGTCATC ATTGTTTCAT CACTATGGTG CATTG--ACT CAAACTCAAT GTCTTATCCA 105503 || ||||||| || | |||| || | ||||| ||| | ||| |||||||||| |||||||||| CTCAGTCATC ATCTTATCAT CAATTTGGTG CATGGAGACT CAAACTCAAT GTCTTATCCA 121 TACAAGGCGT GTTAGGCCA- AATTCTAAAG GACTTGAACC CAAT-CCTTA TCATCATGGT 105561 |||||||| |||||||| ||||||| | |||||||||| |||| ||||| |||| ||||| TACAAGGCAC ATTAGGCCAT AATTCTATGG GACTTGAACC CAATACCTTA TCATTATGGT 181 GCATCAAAAC TCAGATTTGA TGTCTTATCC TCTTGGTGCG ATAGATTTTA AATCTATCGT 105621 |||||||||| || || |||| ||||||| || |||||||||| ||||| || |||||| ||| GCATCAAAAC TC-GAATTGA TGTCTTACCC TCTTGGTGCG ATAGAACTTG AATCTACCGT 240 CTTATCCTCA AATATTTTTC ATTAT 105646 |||| ||||| |||||||||| || || CTTACCCTCA AATATTTTTC ATAAT 265 hqPGS_C08HBa0197J17.1+_SGN-E254688+ (105446 105646) ******************************************************************************** EST sequence 55 +strand 421 n (File: SGN-E250127+) 1 AGGAATGGAG CAAATTTAAT ATGATGAATT TCAATACTTT TCATCGGAAA TATATTATTT 61 TGCCTCAGTC ATCATCTTAT CATCAATTTG GTGCATGGAG ACTCAAACTC AATGTCTTAT 121 CCATACAAGG CACATTAGGC CATAATTCTA TGGGACTTGA ACCCAATACC TTATCATTAT 181 GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 241 GTCTTACCCT CAAATATTTT TCATAATGAA TGACATAAAT GAGTCTTTTT TAAACAAATT 301 TGATAACATA TTTGAGTTTT TTTCTTATGG TTAAATGATG CAAGTGCTTC ATCACTTTCA 361 TAAAGCATTT GAACAATATT ATATATTTGT GCGAAAGAAA GCTACTTCCT AATGGATATT 421 A Predicted gene structure (within gDNA segment 103890 to 108156): Exon 1 105446 105646 ( 201 n); cDNA 64 267 ( 204 n); score: 0.841 MATCH C08HBa0197J17.1+ SGN-E250127+ 0.841 201 0.477 C PGS_C08HBa0197J17.1+_SGN-E250127+ (105446 105646) Alignment (genomic DNA sequence = upper lines): CTTAGTCATC ATTGTTTCAT CACTATGGTG CATTG--ACT CAAACTCAAT GTCTTATCCA 105503 || ||||||| || | |||| || | ||||| ||| | ||| |||||||||| |||||||||| CTCAGTCATC ATCTTATCAT CAATTTGGTG CATGGAGACT CAAACTCAAT GTCTTATCCA 123 TACAAGGCGT GTTAGGCCA- AATTCTAAAG GACTTGAACC CAAT-CCTTA TCATCATGGT 105561 |||||||| |||||||| ||||||| | |||||||||| |||| ||||| |||| ||||| TACAAGGCAC ATTAGGCCAT AATTCTATGG GACTTGAACC CAATACCTTA TCATTATGGT 183 GCATCAAAAC TCAGATTTGA TGTCTTATCC TCTTGGTGCG ATAGATTTTA AATCTATCGT 105621 |||||||||| || || |||| ||||||| || |||||||||| ||||| || |||||| ||| GCATCAAAAC TC-GAATTGA TGTCTTACCC TCTTGGTGCG ATAGAACTTG AATCTACCGT 242 CTTATCCTCA AATATTTTTC ATTAT 105646 |||| ||||| |||||||||| || || CTTACCCTCA AATATTTTTC ATAAT 267 hqPGS_C08HBa0197J17.1+_SGN-E250127+ (105446 105646) ******************************************************************************** EST sequence 16 +strand 281 n (File: SGN-E261191+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAACAAATTT GATAACATAT TTGAGTTTTT TTCTTATGGT 241 TAAATGATGC AAGTGCTTCA TCACTTTCAT AAAGCATTTG A Predicted gene structure (within gDNA segment 104790 to 107656): Exon 1 105473 105646 ( 174 n); cDNA 1 177 ( 177 n); score: 0.851 MATCH C08HBa0197J17.1+ SGN-E261191+ 0.851 174 0.619 C PGS_C08HBa0197J17.1+_SGN-E261191+ (105473 105646) Alignment (genomic DNA sequence = upper lines): GTGCATTG-- ACTCAAACTC AATGTCTTAT CCATACAAGG CGTGTTAGGC CA-AATTCTA 105529 |||||| | |||||||||| |||||||||| |||||||||| | |||||| || ||||||| GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 60 AAGGACTTGA ACCCAAT-CC TTATCATCAT GGTGCATCAA AACTCAGATT TGATGTCTTA 105588 |||||||| ||||||| || ||||||| || |||||||||| ||||| || | |||||||||| TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTC-GAAT TGATGTCTTA 119 TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC TCAAATATTT TTCATTAT 105646 ||||||||| |||||||| || |||||| ||||||| || |||||||||| ||||| || CCCTCTTGGT GCGATAGAAC TTGAATCTAC CGTCTTACCC TCAAATATTT TTCATAAT 177 hqPGS_C08HBa0197J17.1+_SGN-E261191+ (105473 105646) ******************************************************************************** EST sequence 62 +strand 722 n (File: SGN-E260221+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTATGTGGG CTAATTCTCC CATTTATCAA ACATGCAAAA AAAATTACCT TCAAGAAACC 661 AATTGGAAGT ATTTCAATTT CAGGGCACAA ATTCTTGGGA TGTCCAATGT CTTGTGGCGT 721 TC Predicted gene structure (within gDNA segment 104790 to 112666): Exon 1 105473 105644 ( 172 n); cDNA 1 175 ( 175 n); score: 0.849 Intron 1 105645 108523 (2879 n); Pd: 0.000 (s: 0.88), Pa: 0.264 (s: 0) Exon 2 108524 108554 ( 31 n); cDNA 176 205 ( 30 n); score: 0.581 Intron 2 108555 111936 (3382 n); Pd: 0.677 (s: 0), Pa: 0.000 (s: 0.61) Exon 3 111937 111985 ( 49 n); cDNA 206 254 ( 49 n); score: 0.612 MATCH C08HBa0197J17.1+ SGN-E260221+ 0.849 252 0.349 C PGS_C08HBa0197J17.1+_SGN-E260221+ (105473 105644,108524 108554,111937 111985) Alignment (genomic DNA sequence = upper lines): GTGCATTG-- ACTCAAACTC AATGTCTTAT CCATACAAGG CGTGTTAGGC CA-AATTCTA 105529 |||||| | |||||||||| |||||||||| |||||||||| | |||||| || ||||||| GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 60 AAGGACTTGA ACCCAAT-CC TTATCATCAT GGTGCATCAA AACTCAGATT TGATGTCTTA 105588 |||||||| ||||||| || ||||||| || |||||||||| ||||| || | |||||||||| TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTC-GAAT TGATGTCTTA 119 TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC TCAAATATTT TTCATTATAG 105648 ||||||||| |||||||| || |||||| ||||||| || |||||||||| ||||| CCCTCTTGGT GCGATAGAAC TTGAATCTAC CGTCTTACCC TCAAATATTT TTCATA.... 175 TGCATCCGGA CTTTAACCTG ATGTCTTACC CTTTTGGTGC GATGAAACTT GAATCCATCG 105708 .......... .......... .......... .......... .......... .......... 175 TCTTACCCTT AACCAACGGT ATAATAGACC AAAGTACAAC ATGACTCACC CTTTCAGTCT 105768 .......... .......... .......... .......... .......... .......... 175 TTCAAAACAA TCAAAATAAC ATTCAAACTC ATGCTATTAA AATTTTGTAC CTTCTTCTAT 105828 .......... .......... .......... .......... .......... .......... 175 TTAAGAAGTT TTGTATAGCA TGTTATATTC AACCAATAGT AGTATATGTC TTCGGTTCTT 105888 .......... .......... .......... .......... .......... .......... 175 GATAATTGTT AGTGACTGAA TATTATTTTT ATTCTAAATC ATAAAATATT CTAGAAAATA 105948 .......... .......... .......... .......... .......... .......... 175 CATACCTGAT TTTATGCATA TAATACCTTG ATTCTCATAA CGAGATCAAC CAAAACACGA 106008 .......... .......... .......... .......... .......... .......... 175 GTTAATGAAA AAACTAAAAC TCAATCTTAA TTGGCTAGAG ATTCGTGCTG ATAACGTGTT 106068 .......... .......... .......... .......... .......... .......... 175 ATAAAATCAA GCTCATAAGA ATATAATCAT AAAGAGAAGA AGACAAGAGA AGTAGATAGA 106128 .......... .......... .......... .......... .......... .......... 175 AGAGGAATTT TCTTTCTTAT TCAAGTGTAT TCAAGTCTCA TATGTATCTA TTACAATAGT 106188 .......... .......... .......... .......... .......... .......... 175 GAATGAACAA CCCTATTTAT AGAGTGAGAA ATCACTCTAA ACGTCACCAT ATTAAGTATC 106248 .......... .......... .......... .......... .......... .......... 175 ATAATAAATA GATACATTCT TATCCAAAAA GGTTCATGTA ACCTAGTGAA TATGAATGGT 106308 .......... .......... .......... .......... .......... .......... 175 TGTTCATGTA CCAACCTTAT GGACTATGCA CTCATTCAAT GAATTTATAA CAGAATTCAT 106368 .......... .......... .......... .......... .......... .......... 175 GTTTTAATGT TCTTTTTTTA AAGGATGTGA AACGTTTCAA TAATTCAATT AATTTGAAAT 106428 .......... .......... .......... .......... .......... .......... 175 GAAAAGAGTA TACTTTTTAG TAATCTTAGT TTTATACTAT GTTTTGTTAT ATTATTCTCT 106488 .......... .......... .......... .......... .......... .......... 175 CCACATATAT TAATTATTTC GAATAAATTA ATTGTAGTAA GCGCGATGAT AAAAATGGAT 106548 .......... .......... .......... .......... .......... .......... 175 AAAAGAATAC GTGTCTAGTC ACATATTCAA ACCTAACAAG ATATTTGACC AAATCAATGT 106608 .......... .......... .......... .......... .......... .......... 175 GATGGCAATT GGATTTCACA TGTAATACTG AAATTATAGT ACACTAGAAC TTATCTACCT 106668 .......... .......... .......... .......... .......... .......... 175 ACAACGGCAG CAAAGAGTTG TAGACAACTT TTCTTTTATA GTTGTGACAT TCTAATGAGT 106728 .......... .......... .......... .......... .......... .......... 175 TTGTGTGTAT GTTTGATTAG TTTTAGTATA GGTGTCGAAT AGCTTTATTC ATTAAAGCTA 106788 .......... .......... .......... .......... .......... .......... 175 GGATATATGA GAAGATTATT TAGTAATTTT TGGTTAAAGA TAATTTTTTA TTGGTATGTC 106848 .......... .......... .......... .......... .......... .......... 175 TACACAAATA TTATCGTAAG TGCAAGTTTA ATCTTTATCT TGAGCGCAAG TTTAGTTTTC 106908 .......... .......... .......... .......... .......... .......... 175 TTCTTTAACC AATCACTTTT AATTTTTTAC GAAATTCTAA CTCAGCGATT TGCTTACTTC 106968 .......... .......... .......... .......... .......... .......... 175 AATATTATCT CATCTAAAGT TTTAAATTAT TAAACAATTA TTATTATAGT CTTAAATAAA 107028 .......... .......... .......... .......... .......... .......... 175 GGTAACTAAC ATTGTGTGCA TTTATTAATA CAACAATCGT TTTTGGCAAG TTGAATTTAT 107088 .......... .......... .......... .......... .......... .......... 175 CTCAAATAAT TAAGATTTTA GAAGGAAAAA AGGAGGTCAT TTATTTCCAT TTTTGCTATG 107148 .......... .......... .......... .......... .......... .......... 175 TAGTTGAACG TTCACATACT CTTGTGACCG GGGTACTAAA TATTTTTCTT AATATACAAA 107208 .......... .......... .......... .......... .......... .......... 175 TTCTTCCATT CATTTTTTCT TATTTAATTT TGATTTACGT ACCTCTGATA ATAAATAAAA 107268 .......... .......... .......... .......... .......... .......... 175 TAATATTTTA TAATTCAAAA AATATAACAA AAAAATAACT TTAGTTAATA GTAAGGATAA 107328 .......... .......... .......... .......... .......... .......... 175 ATTAGAATTA AGTGATAAAT GAATATATAT TTTGAATATA ATAAATAAGT AAAAATGAAT 107388 .......... .......... .......... .......... .......... .......... 175 CGAGAGAGTA ACAATATATC CAATATAATT CGACAAATGG AACTGTCTAA GGGACGTCAT 107448 .......... .......... .......... .......... .......... .......... 175 GTGTTTGAGG TAGAAATGTT ATTTTTGATA GATCATCACC TTTAGTAAAA TATTTCAAAA 107508 .......... .......... .......... .......... .......... .......... 175 CAACTTTGAA ATGGTTATAC AATAATGTAT AATTCATGTA AAAGAAAACA AAAAAAAAAT 107568 .......... .......... .......... .......... .......... .......... 175 TAATAACAAC AAATATATAA TACAATAAAC GAAACAAAAA AAAATAGCAA GTAATACTAA 107628 .......... .......... .......... .......... .......... .......... 175 TAAAAACTAA ATATATCAAA CTATCTACTA ACTTTCAATT CTAATCCTCG ATCTCCATAT 107688 .......... .......... .......... .......... .......... .......... 175 GTTCGACGGA CTAAAATATT AATCATAAAA TATGTGCAAA AATCATTAAA ATACACATAA 107748 .......... .......... .......... .......... .......... .......... 175 TATGAAACTA TAAAACAAAA GGGATCACTC CAACATTGGT ACGAATCTTT TTGCAACTGG 107808 .......... .......... .......... .......... .......... .......... 175 CCCCCCTTCT TTGTCCTCAT TGATATGTCC ATCATTAAAG CAATCTAATT AATTAATTAA 107868 .......... .......... .......... .......... .......... .......... 175 ACTAAAATAA ATTACAGTCC ACTATCACTG GCCTCTGTAC AGTAATTTCC CTGATTAGTC 107928 .......... .......... .......... .......... .......... .......... 175 AGTTAATAAT TTGTAATTTC CCAGAAAACT TCACTAATTA AAATGGTTAA ACAAAAAAGC 107988 .......... .......... .......... .......... .......... .......... 175 AACGGTCAAG TAAAAAACGG GTATCATGAG ACATGCACGT GCATGGGACG TGACTTCACC 108048 .......... .......... .......... .......... .......... .......... 175 TGCACCCTCT AAAAGAACAA ACAGACAAAA TTAAAAAAAA AAGTTTAATA CATGATCATG 108108 .......... .......... .......... .......... .......... .......... 175 TCTTTTAACT TAATTTCGAA ATATTTTTTT TAACTTTATG CGTGAATAAG TAGATACTTA 108168 .......... .......... .......... .......... .......... .......... 175 AATTTATATA GAATTGAATA AGTAAATTCT ACTTGACGTC CTACGTGATC ATTTGTGTCA 108228 .......... .......... .......... .......... .......... .......... 175 GTGCAGGATT CAGAATTTTC ATTTAGAAAA TTCAAAAAAA AAAAAGTAAT GCTTTTGAAT 108288 .......... .......... .......... .......... .......... .......... 175 ATACAATATA ATTTTTTACT GAGGGCATAC TCTAGGTCCC GCCCTCCCCG GTTTGCGTCT 108348 .......... .......... .......... .......... .......... .......... 175 TACGCTCTTA TTGTATCATA CCAGGTAGAA TGTGTGTGAT TACTTGATCA TTTTTATACA 108408 .......... .......... .......... .......... .......... .......... 175 AATTAAAGTA TTTACTTGTA CACGTTTAAA GCTAAAATAT ATAGATAAAA TAAGACAGAT 108468 .......... .......... .......... .......... .......... .......... 175 AAATTAAAAG TTTTTTTTTT GGTTTGTTAA TTTTATGATA GTTAAAATAA GACAGACAAA 108528 | || .......... .......... .......... .......... .......... .....ATGAA 180 TTAAAATAAG ACAGACAAAT TAAAACGTGA GAAAAAGAAA AATAATTTTT GACACTGTTC 108588 | | |||| || | | | |||| -TGACATAAA TGAGTCTTTT TTAAAC.... .......... .......... .......... 205 CTTATAATAC CAACTCTCTC TCTCAACGGT TATATTCCTC TGACATATAC CTCAACGGTC 108648 .......... .......... .......... .......... .......... .......... 205 ATATTCTTGT TCCTTTTCCA CCGTCTGATT AAGATCGGAC GGTGATAGAT GGAGGTTCCT 108708 .......... .......... .......... .......... .......... .......... 205 CTCTCCCCTT TCTCCAACAT CATCTTTACC AAGCCATGAT TTGTTTCCCT CTGGAAGTAA 108768 .......... .......... .......... .......... .......... .......... 205 AAAACAAGAA GAGGGCTGTT TCAATCTTGA TATATAAAAT AACACAGTTG TATATGGGGT 108828 .......... .......... .......... .......... .......... .......... 205 TTAACTTTTT TGGGTAGTGG GGCTTTGGGA AGTTACTTCT TTTTCTTCAG TTTTTCTCTG 108888 .......... .......... .......... .......... .......... .......... 205 TGGTGATTAT AATGATGATG ATGATGACAG TTGATTTGTC TGTTTACATG CATGTTTGAG 108948 .......... .......... .......... .......... .......... .......... 205 GGCTTAAGGG TCATTATCTT GGGGGGTTGG TGTAGATTTT GGTTTTAGTT TTAGCTAGGA 109008 .......... .......... .......... .......... .......... .......... 205 TTTTCTTGTG GGGGTTGTTT GAAATCTTGT TTGGTGAAAT GGGTTGCATA AAGATTCAAT 109068 .......... .......... .......... .......... .......... .......... 205 TTTTAGGGTG TTGATTGGTG TAGATTTCAG CTAAGCTGGC ATGGGATTGT TGAAAGTGTA 109128 .......... .......... .......... .......... .......... .......... 205 TTTTGCTGAA GTGGGTAGCT CAAAGTTTCA GTTTTTCTGC TGCATTTCTG GGAAAAAATG 109188 .......... .......... .......... .......... .......... .......... 205 TGTTCAGAGT TTCTACATTC ATGGTGTGAG TTCTTCTTCT TTCAATTCTT TGGGAAATCA 109248 .......... .......... .......... .......... .......... .......... 205 TATTTCTAGA TAATGAGTTT TATTGTACTG TGAAAGTTTT GGAATCCGAT GATCTTTTTT 109308 .......... .......... .......... .......... .......... .......... 205 TGGTAGGTAT TAAAATTGTT GATAATAGGA GATTCTTTCC AATTCTTTGA TTCTTTCTAT 109368 .......... .......... .......... .......... .......... .......... 205 TTTGGTGTTT GTGTATTGTT GTTGATTCCA TTCTTTGTTG CATATAGAAA TATTATATAT 109428 .......... .......... .......... .......... .......... .......... 205 AGGACACACA GATATCACAT TTTGTTTTTT TGGCATCGGA TTCCAGTTTT TGTTTTTCTT 109488 .......... .......... .......... .......... .......... .......... 205 GGAACTTCAC ACACACTCAC ATATAGACAT TGTTCTGTTT CTCTTGGATC ATCTATAGAA 109548 .......... .......... .......... .......... .......... .......... 205 ATTTAGCATT ATCATATTGT ATATTTCATA GTGAAAATAT ATACATATAT AGAAAGATAA 109608 .......... .......... .......... .......... .......... .......... 205 GAGAGACAGA GACATAGAGA AGAAAAGGGG TTGGGTGAGT TGGAGTTGAA AAGAAAAGAA 109668 .......... .......... .......... .......... .......... .......... 205 AAAAATTGGA AGGGTGTGAA GAATGTTGGC TGGTTGTTCT TCTTCATTGT TGTCACCTAG 109728 .......... .......... .......... .......... .......... .......... 205 GCATAGATTA AGGAGTGAAG CATCTGCACA GTTTCAAGCT TGTAATTTCC CTTCAATGAG 109788 .......... .......... .......... .......... .......... .......... 205 CACACAAAGA TTGGACTTGC CATGTAGTTT TGCCAGGAAA GATACCTCAA GGTCCCAGTC 109848 .......... .......... .......... .......... .......... .......... 205 CATTAGTAGG CCAGTGGGAC TTTCTGTTGA GAAGCCAATT GAAGCGAAGA ACAGTACTTG 109908 .......... .......... .......... .......... .......... .......... 205 CTCTCTCAAG CAGAACATTC GTCTACCGCC ATCCTCGACA AGTGCTCAGA CATCATATGT 109968 .......... .......... .......... .......... .......... .......... 205 AGAAGGTAGG AGAGAAAGCA AAGATGAATT TTGGGAAAAA GGTAGGAGCT TGAAGAGGTA 110028 .......... .......... .......... .......... .......... .......... 205 TGCTGAGCAG GGATGTATTG ATGATGAGAG CTGCATGAGC AGAGCTAAGA GGAAAAAAAG 110088 .......... .......... .......... .......... .......... .......... 205 TAATAGGAAG TCAGGTGATT CTTCAGAAGA TGGCTATGAT CTGAGTTTGA GCCAATTGGG 110148 .......... .......... .......... .......... .......... .......... 205 TGGTGGCGAT TTCTGGTTAC AATCAGGTTT CAATGCGGCG CGATCAGTTC CCCTAATTGC 110208 .......... .......... .......... .......... .......... .......... 205 AGGCCTTCAT CCACCTCAAG CAGCACCATT CTCCTTTTCT TGTTCCGGAG AGGAAGAGAG 110268 .......... .......... .......... .......... .......... .......... 205 TGTATGTTAT GTGCCAAATG AGGTGATATC ACCACCTCTG CCTATGTCAA ACAATCCTTG 110328 .......... .......... .......... .......... .......... .......... 205 GATTGAATCT GTAGTGACTG AGATTACTAA TTTTGGCGAC AAGAATGTCT CAACAAGTCA 110388 .......... .......... .......... .......... .......... .......... 205 AGATCTTGCC AGAGAGGCCT CAGTATCAAG TGCTTCTTTA GACAGTCATG GCTTGGTTCT 110448 .......... .......... .......... .......... .......... .......... 205 TAGGCCTAAT GAGAATCTCG GGGAGCATGA AGTAGGCAAT GGTTCTAGGC TACCTAATCC 110508 .......... .......... .......... .......... .......... .......... 205 AAATGACAGG GGTGAAGTTG TAACAGCACA TAATGGGCAT AATAACCACA GGGAGGATGA 110568 .......... .......... .......... .......... .......... .......... 205 TGCAGCTGAG CTGATCAGCT TACTTGTGAG TTGTGTTGAA GCAATTGGCT CAAGGAATGT 110628 .......... .......... .......... .......... .......... .......... 205 TACTGGTGTT AATCAACTGA TAGCTAGGCT AGGGCAGCTT GCCTCTCCAA GAGGGTCTCC 110688 .......... .......... .......... .......... .......... .......... 205 AGTAAGTCGG CTAACTGCTT ACTTCACCGA AGCTTTAGCT TTGCGTGTTG CGAGGATTTG 110748 .......... .......... .......... .......... .......... .......... 205 GCCTCATATC TTTCACATTA TACCCCCTCG GGACCTTGAT CGTTTAGATG ATGATAGCAG 110808 .......... .......... .......... .......... .......... .......... 205 TACAGCATTG AGGCTGTTGA ATCAGGTTAG TCCAATTCCA AAGTTCATCC ATTTCACATC 110868 .......... .......... .......... .......... .......... .......... 205 AAATGAGATT CTGCTTAGAG CTTTTGAAGG CAAGGACCGG GTTCACATTA TTGATTTTGA 110928 .......... .......... .......... .......... .......... .......... 205 CATTAAGCAA GGGCTGCAGT GGCCTAGCCT GTTTCAGAGT TTGGCTTCTA GGCCCAACCC 110988 .......... .......... .......... .......... .......... .......... 205 TCCTACTCAT GTTAGAATTA CTGGTATAGG AGAATCAAAG CAGGATCTTG TTGAAACAGG 111048 .......... .......... .......... .......... .......... .......... 205 AGATAGACTT GCTGAGTTTG CTGAGGCGTT GAATCTGGCT TTCGAGTTCC ATCCAGTTGT 111108 .......... .......... .......... .......... .......... .......... 205 TGACAGGTTG GAAGATGTAC GGCTATGGAT GCTTCATGTA AAAGAGGGAG AAAGTGTTGC 111168 .......... .......... .......... .......... .......... .......... 205 AGTGAATTGT GTGTTGCAGA TGCATAGGCT TCTATATGAT AGTTCTGGGG GGATCCTGAG 111228 .......... .......... .......... .......... .......... .......... 205 AGACTTTTTG GGGCTGATTA GAAGCACAAA TCCCACCATT ATTCTGATGG CAGAGCAAGA 111288 .......... .......... .......... .......... .......... .......... 205 AGCTGAGCAC AATGAGCCTA GCTTGGAAGC AAGACTTGTC AACTCACTTA GATACTATGC 111348 .......... .......... .......... .......... .......... .......... 205 TGCTGTATTT GATTCTATTG CTTTCGGTCT TCCATTAGAC AGTCCTGCCA GGATTAAGAT 111408 .......... .......... .......... .......... .......... .......... 205 AGAGGAGTTG TTTGCTCGGG ATATTAGAAA TATCATTGCT TGTGAAGGAC GAGATAGGAC 111468 .......... .......... .......... .......... .......... .......... 205 TGAAAGGCAT GAATGCTTTG GGAAATGGCG GAAGTTGATG GAACAAGGGG GTTTCAGATG 111528 .......... .......... .......... .......... .......... .......... 205 CACTGGGATT ACAGAAAGGG AACTGCTTCA GAGTCAAATG CTGTTGAAGA TGTACTCATG 111588 .......... .......... .......... .......... .......... .......... 205 TGAAGACTAC AGGGTCACAA AGCAGGGGAA TGATGATGCT GCACTTACTC TGAGTTGGTT 111648 .......... .......... .......... .......... .......... .......... 205 AGACCAGCCT CTATGCACAG TCTCCGCGTG GACACCCATT GATGCTGCTG GAAGTTCATC 111708 .......... .......... .......... .......... .......... .......... 205 CTCTTATTAT CAGCCAAGTT GATTGATTTT CTTTCGTCGG AACTCTTCAT TCATTGATAG 111768 .......... .......... .......... .......... .......... .......... 205 ACAGACAAGC CGTTGTTCTT TTCGTACACA GGAAAAAAGG TTAACAAATT CTTTGTAGAG 111828 .......... .......... .......... .......... .......... .......... 205 GTAGTGTCAT TCTTTCATTC TTTATTGCAG ATAGATTTGC CAATCTGGTA AGAAAAGAAA 111888 .......... .......... .......... .......... .......... .......... 205 ATCTTTTAGA TAAAAATGCA TAGGCGTCGG GGTTCATTTT GTTTGGGTAC CTTTGATTTC 111948 | |||||| | .......... .......... .......... .......... ........AA ATTTGATAAC 217 ATATTTGTAT TCATTCTTTA TTCTTCTTGT AAGCTAG 111985 ||||||| | | || ||| | || | || || ATATTTGAGT TTTTTTCTTA TGGTTAAATG ATGCAAG 254 hqPGS_C08HBa0197J17.1+_SGN-E260221+ (105473 105644) ******************************************************************************** EST sequence 2 +strand 827 n (File: SGN-E261435+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTATGTGGG CTAATTCTCC CATTTATCAA ACATGCAAAA AAAATTACCT TCAAGAAACC 661 AATTGGAAGT ATTTCAATTT CAGGGCACAA ATTCTTGGGA TGTCCAATGT CTTGTGGCGT 721 TCAGATAACA AGGAGAAGTT ACGTTAGCAC CCTCTCAAAA ATTGAGTATA TTAATTCCGC 781 AGATGCTACA ATTTCTGGTA GTCGAAATGG ATTTACACCA ATATTCT Predicted gene structure (within gDNA segment 104790 to 113116): Exon 1 105473 105644 ( 172 n); cDNA 1 175 ( 175 n); score: 0.849 Intron 1 105645 108523 (2879 n); Pd: 0.000 (s: 0.88), Pa: 0.264 (s: 0) Exon 2 108524 108554 ( 31 n); cDNA 176 205 ( 30 n); score: 0.581 Intron 2 108555 111936 (3382 n); Pd: 0.677 (s: 0), Pa: 0.000 (s: 0.61) Exon 3 111937 111985 ( 49 n); cDNA 206 254 ( 49 n); score: 0.612 MATCH C08HBa0197J17.1+ SGN-E261435+ 0.849 252 0.305 C PGS_C08HBa0197J17.1+_SGN-E261435+ (105473 105644,108524 108554,111937 111985) Alignment (genomic DNA sequence = upper lines): GTGCATTG-- ACTCAAACTC AATGTCTTAT CCATACAAGG CGTGTTAGGC CA-AATTCTA 105529 |||||| | |||||||||| |||||||||| |||||||||| | |||||| || ||||||| GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 60 AAGGACTTGA ACCCAAT-CC TTATCATCAT GGTGCATCAA AACTCAGATT TGATGTCTTA 105588 |||||||| ||||||| || ||||||| || |||||||||| ||||| || | |||||||||| TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTC-GAAT TGATGTCTTA 119 TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC TCAAATATTT TTCATTATAG 105648 ||||||||| |||||||| || |||||| ||||||| || |||||||||| ||||| CCCTCTTGGT GCGATAGAAC TTGAATCTAC CGTCTTACCC TCAAATATTT TTCATA.... 175 TGCATCCGGA CTTTAACCTG ATGTCTTACC CTTTTGGTGC GATGAAACTT GAATCCATCG 105708 .......... .......... .......... .......... .......... .......... 175 TCTTACCCTT AACCAACGGT ATAATAGACC AAAGTACAAC ATGACTCACC CTTTCAGTCT 105768 .......... .......... .......... .......... .......... .......... 175 TTCAAAACAA TCAAAATAAC ATTCAAACTC ATGCTATTAA AATTTTGTAC CTTCTTCTAT 105828 .......... .......... .......... .......... .......... .......... 175 TTAAGAAGTT TTGTATAGCA TGTTATATTC AACCAATAGT AGTATATGTC TTCGGTTCTT 105888 .......... .......... .......... .......... .......... .......... 175 GATAATTGTT AGTGACTGAA TATTATTTTT ATTCTAAATC ATAAAATATT CTAGAAAATA 105948 .......... .......... .......... .......... .......... .......... 175 CATACCTGAT TTTATGCATA TAATACCTTG ATTCTCATAA CGAGATCAAC CAAAACACGA 106008 .......... .......... .......... .......... .......... .......... 175 GTTAATGAAA AAACTAAAAC TCAATCTTAA TTGGCTAGAG ATTCGTGCTG ATAACGTGTT 106068 .......... .......... .......... .......... .......... .......... 175 ATAAAATCAA GCTCATAAGA ATATAATCAT AAAGAGAAGA AGACAAGAGA AGTAGATAGA 106128 .......... .......... .......... .......... .......... .......... 175 AGAGGAATTT TCTTTCTTAT TCAAGTGTAT TCAAGTCTCA TATGTATCTA TTACAATAGT 106188 .......... .......... .......... .......... .......... .......... 175 GAATGAACAA CCCTATTTAT AGAGTGAGAA ATCACTCTAA ACGTCACCAT ATTAAGTATC 106248 .......... .......... .......... .......... .......... .......... 175 ATAATAAATA GATACATTCT TATCCAAAAA GGTTCATGTA ACCTAGTGAA TATGAATGGT 106308 .......... .......... .......... .......... .......... .......... 175 TGTTCATGTA CCAACCTTAT GGACTATGCA CTCATTCAAT GAATTTATAA CAGAATTCAT 106368 .......... .......... .......... .......... .......... .......... 175 GTTTTAATGT TCTTTTTTTA AAGGATGTGA AACGTTTCAA TAATTCAATT AATTTGAAAT 106428 .......... .......... .......... .......... .......... .......... 175 GAAAAGAGTA TACTTTTTAG TAATCTTAGT TTTATACTAT GTTTTGTTAT ATTATTCTCT 106488 .......... .......... .......... .......... .......... .......... 175 CCACATATAT TAATTATTTC GAATAAATTA ATTGTAGTAA GCGCGATGAT AAAAATGGAT 106548 .......... .......... .......... .......... .......... .......... 175 AAAAGAATAC GTGTCTAGTC ACATATTCAA ACCTAACAAG ATATTTGACC AAATCAATGT 106608 .......... .......... .......... .......... .......... .......... 175 GATGGCAATT GGATTTCACA TGTAATACTG AAATTATAGT ACACTAGAAC TTATCTACCT 106668 .......... .......... .......... .......... .......... .......... 175 ACAACGGCAG CAAAGAGTTG TAGACAACTT TTCTTTTATA GTTGTGACAT TCTAATGAGT 106728 .......... .......... .......... .......... .......... .......... 175 TTGTGTGTAT GTTTGATTAG TTTTAGTATA GGTGTCGAAT AGCTTTATTC ATTAAAGCTA 106788 .......... .......... .......... .......... .......... .......... 175 GGATATATGA GAAGATTATT TAGTAATTTT TGGTTAAAGA TAATTTTTTA TTGGTATGTC 106848 .......... .......... .......... .......... .......... .......... 175 TACACAAATA TTATCGTAAG TGCAAGTTTA ATCTTTATCT TGAGCGCAAG TTTAGTTTTC 106908 .......... .......... .......... .......... .......... .......... 175 TTCTTTAACC AATCACTTTT AATTTTTTAC GAAATTCTAA CTCAGCGATT TGCTTACTTC 106968 .......... .......... .......... .......... .......... .......... 175 AATATTATCT CATCTAAAGT TTTAAATTAT TAAACAATTA TTATTATAGT CTTAAATAAA 107028 .......... .......... .......... .......... .......... .......... 175 GGTAACTAAC ATTGTGTGCA TTTATTAATA CAACAATCGT TTTTGGCAAG TTGAATTTAT 107088 .......... .......... .......... .......... .......... .......... 175 CTCAAATAAT TAAGATTTTA GAAGGAAAAA AGGAGGTCAT TTATTTCCAT TTTTGCTATG 107148 .......... .......... .......... .......... .......... .......... 175 TAGTTGAACG TTCACATACT CTTGTGACCG GGGTACTAAA TATTTTTCTT AATATACAAA 107208 .......... .......... .......... .......... .......... .......... 175 TTCTTCCATT CATTTTTTCT TATTTAATTT TGATTTACGT ACCTCTGATA ATAAATAAAA 107268 .......... .......... .......... .......... .......... .......... 175 TAATATTTTA TAATTCAAAA AATATAACAA AAAAATAACT TTAGTTAATA GTAAGGATAA 107328 .......... .......... .......... .......... .......... .......... 175 ATTAGAATTA AGTGATAAAT GAATATATAT TTTGAATATA ATAAATAAGT AAAAATGAAT 107388 .......... .......... .......... .......... .......... .......... 175 CGAGAGAGTA ACAATATATC CAATATAATT CGACAAATGG AACTGTCTAA GGGACGTCAT 107448 .......... .......... .......... .......... .......... .......... 175 GTGTTTGAGG TAGAAATGTT ATTTTTGATA GATCATCACC TTTAGTAAAA TATTTCAAAA 107508 .......... .......... .......... .......... .......... .......... 175 CAACTTTGAA ATGGTTATAC AATAATGTAT AATTCATGTA AAAGAAAACA AAAAAAAAAT 107568 .......... .......... .......... .......... .......... .......... 175 TAATAACAAC AAATATATAA TACAATAAAC GAAACAAAAA AAAATAGCAA GTAATACTAA 107628 .......... .......... .......... .......... .......... .......... 175 TAAAAACTAA ATATATCAAA CTATCTACTA ACTTTCAATT CTAATCCTCG ATCTCCATAT 107688 .......... .......... .......... .......... .......... .......... 175 GTTCGACGGA CTAAAATATT AATCATAAAA TATGTGCAAA AATCATTAAA ATACACATAA 107748 .......... .......... .......... .......... .......... .......... 175 TATGAAACTA TAAAACAAAA GGGATCACTC CAACATTGGT ACGAATCTTT TTGCAACTGG 107808 .......... .......... .......... .......... .......... .......... 175 CCCCCCTTCT TTGTCCTCAT TGATATGTCC ATCATTAAAG CAATCTAATT AATTAATTAA 107868 .......... .......... .......... .......... .......... .......... 175 ACTAAAATAA ATTACAGTCC ACTATCACTG GCCTCTGTAC AGTAATTTCC CTGATTAGTC 107928 .......... .......... .......... .......... .......... .......... 175 AGTTAATAAT TTGTAATTTC CCAGAAAACT TCACTAATTA AAATGGTTAA ACAAAAAAGC 107988 .......... .......... .......... .......... .......... .......... 175 AACGGTCAAG TAAAAAACGG GTATCATGAG ACATGCACGT GCATGGGACG TGACTTCACC 108048 .......... .......... .......... .......... .......... .......... 175 TGCACCCTCT AAAAGAACAA ACAGACAAAA TTAAAAAAAA AAGTTTAATA CATGATCATG 108108 .......... .......... .......... .......... .......... .......... 175 TCTTTTAACT TAATTTCGAA ATATTTTTTT TAACTTTATG CGTGAATAAG TAGATACTTA 108168 .......... .......... .......... .......... .......... .......... 175 AATTTATATA GAATTGAATA AGTAAATTCT ACTTGACGTC CTACGTGATC ATTTGTGTCA 108228 .......... .......... .......... .......... .......... .......... 175 GTGCAGGATT CAGAATTTTC ATTTAGAAAA TTCAAAAAAA AAAAAGTAAT GCTTTTGAAT 108288 .......... .......... .......... .......... .......... .......... 175 ATACAATATA ATTTTTTACT GAGGGCATAC TCTAGGTCCC GCCCTCCCCG GTTTGCGTCT 108348 .......... .......... .......... .......... .......... .......... 175 TACGCTCTTA TTGTATCATA CCAGGTAGAA TGTGTGTGAT TACTTGATCA TTTTTATACA 108408 .......... .......... .......... .......... .......... .......... 175 AATTAAAGTA TTTACTTGTA CACGTTTAAA GCTAAAATAT ATAGATAAAA TAAGACAGAT 108468 .......... .......... .......... .......... .......... .......... 175 AAATTAAAAG TTTTTTTTTT GGTTTGTTAA TTTTATGATA GTTAAAATAA GACAGACAAA 108528 | || .......... .......... .......... .......... .......... .....ATGAA 180 TTAAAATAAG ACAGACAAAT TAAAACGTGA GAAAAAGAAA AATAATTTTT GACACTGTTC 108588 | | |||| || | | | |||| -TGACATAAA TGAGTCTTTT TTAAAC.... .......... .......... .......... 205 CTTATAATAC CAACTCTCTC TCTCAACGGT TATATTCCTC TGACATATAC CTCAACGGTC 108648 .......... .......... .......... .......... .......... .......... 205 ATATTCTTGT TCCTTTTCCA CCGTCTGATT AAGATCGGAC GGTGATAGAT GGAGGTTCCT 108708 .......... .......... .......... .......... .......... .......... 205 CTCTCCCCTT TCTCCAACAT CATCTTTACC AAGCCATGAT TTGTTTCCCT CTGGAAGTAA 108768 .......... .......... .......... .......... .......... .......... 205 AAAACAAGAA GAGGGCTGTT TCAATCTTGA TATATAAAAT AACACAGTTG TATATGGGGT 108828 .......... .......... .......... .......... .......... .......... 205 TTAACTTTTT TGGGTAGTGG GGCTTTGGGA AGTTACTTCT TTTTCTTCAG TTTTTCTCTG 108888 .......... .......... .......... .......... .......... .......... 205 TGGTGATTAT AATGATGATG ATGATGACAG TTGATTTGTC TGTTTACATG CATGTTTGAG 108948 .......... .......... .......... .......... .......... .......... 205 GGCTTAAGGG TCATTATCTT GGGGGGTTGG TGTAGATTTT GGTTTTAGTT TTAGCTAGGA 109008 .......... .......... .......... .......... .......... .......... 205 TTTTCTTGTG GGGGTTGTTT GAAATCTTGT TTGGTGAAAT GGGTTGCATA AAGATTCAAT 109068 .......... .......... .......... .......... .......... .......... 205 TTTTAGGGTG TTGATTGGTG TAGATTTCAG CTAAGCTGGC ATGGGATTGT TGAAAGTGTA 109128 .......... .......... .......... .......... .......... .......... 205 TTTTGCTGAA GTGGGTAGCT CAAAGTTTCA GTTTTTCTGC TGCATTTCTG GGAAAAAATG 109188 .......... .......... .......... .......... .......... .......... 205 TGTTCAGAGT TTCTACATTC ATGGTGTGAG TTCTTCTTCT TTCAATTCTT TGGGAAATCA 109248 .......... .......... .......... .......... .......... .......... 205 TATTTCTAGA TAATGAGTTT TATTGTACTG TGAAAGTTTT GGAATCCGAT GATCTTTTTT 109308 .......... .......... .......... .......... .......... .......... 205 TGGTAGGTAT TAAAATTGTT GATAATAGGA GATTCTTTCC AATTCTTTGA TTCTTTCTAT 109368 .......... .......... .......... .......... .......... .......... 205 TTTGGTGTTT GTGTATTGTT GTTGATTCCA TTCTTTGTTG CATATAGAAA TATTATATAT 109428 .......... .......... .......... .......... .......... .......... 205 AGGACACACA GATATCACAT TTTGTTTTTT TGGCATCGGA TTCCAGTTTT TGTTTTTCTT 109488 .......... .......... .......... .......... .......... .......... 205 GGAACTTCAC ACACACTCAC ATATAGACAT TGTTCTGTTT CTCTTGGATC ATCTATAGAA 109548 .......... .......... .......... .......... .......... .......... 205 ATTTAGCATT ATCATATTGT ATATTTCATA GTGAAAATAT ATACATATAT AGAAAGATAA 109608 .......... .......... .......... .......... .......... .......... 205 GAGAGACAGA GACATAGAGA AGAAAAGGGG TTGGGTGAGT TGGAGTTGAA AAGAAAAGAA 109668 .......... .......... .......... .......... .......... .......... 205 AAAAATTGGA AGGGTGTGAA GAATGTTGGC TGGTTGTTCT TCTTCATTGT TGTCACCTAG 109728 .......... .......... .......... .......... .......... .......... 205 GCATAGATTA AGGAGTGAAG CATCTGCACA GTTTCAAGCT TGTAATTTCC CTTCAATGAG 109788 .......... .......... .......... .......... .......... .......... 205 CACACAAAGA TTGGACTTGC CATGTAGTTT TGCCAGGAAA GATACCTCAA GGTCCCAGTC 109848 .......... .......... .......... .......... .......... .......... 205 CATTAGTAGG CCAGTGGGAC TTTCTGTTGA GAAGCCAATT GAAGCGAAGA ACAGTACTTG 109908 .......... .......... .......... .......... .......... .......... 205 CTCTCTCAAG CAGAACATTC GTCTACCGCC ATCCTCGACA AGTGCTCAGA CATCATATGT 109968 .......... .......... .......... .......... .......... .......... 205 AGAAGGTAGG AGAGAAAGCA AAGATGAATT TTGGGAAAAA GGTAGGAGCT TGAAGAGGTA 110028 .......... .......... .......... .......... .......... .......... 205 TGCTGAGCAG GGATGTATTG ATGATGAGAG CTGCATGAGC AGAGCTAAGA GGAAAAAAAG 110088 .......... .......... .......... .......... .......... .......... 205 TAATAGGAAG TCAGGTGATT CTTCAGAAGA TGGCTATGAT CTGAGTTTGA GCCAATTGGG 110148 .......... .......... .......... .......... .......... .......... 205 TGGTGGCGAT TTCTGGTTAC AATCAGGTTT CAATGCGGCG CGATCAGTTC CCCTAATTGC 110208 .......... .......... .......... .......... .......... .......... 205 AGGCCTTCAT CCACCTCAAG CAGCACCATT CTCCTTTTCT TGTTCCGGAG AGGAAGAGAG 110268 .......... .......... .......... .......... .......... .......... 205 TGTATGTTAT GTGCCAAATG AGGTGATATC ACCACCTCTG CCTATGTCAA ACAATCCTTG 110328 .......... .......... .......... .......... .......... .......... 205 GATTGAATCT GTAGTGACTG AGATTACTAA TTTTGGCGAC AAGAATGTCT CAACAAGTCA 110388 .......... .......... .......... .......... .......... .......... 205 AGATCTTGCC AGAGAGGCCT CAGTATCAAG TGCTTCTTTA GACAGTCATG GCTTGGTTCT 110448 .......... .......... .......... .......... .......... .......... 205 TAGGCCTAAT GAGAATCTCG GGGAGCATGA AGTAGGCAAT GGTTCTAGGC TACCTAATCC 110508 .......... .......... .......... .......... .......... .......... 205 AAATGACAGG GGTGAAGTTG TAACAGCACA TAATGGGCAT AATAACCACA GGGAGGATGA 110568 .......... .......... .......... .......... .......... .......... 205 TGCAGCTGAG CTGATCAGCT TACTTGTGAG TTGTGTTGAA GCAATTGGCT CAAGGAATGT 110628 .......... .......... .......... .......... .......... .......... 205 TACTGGTGTT AATCAACTGA TAGCTAGGCT AGGGCAGCTT GCCTCTCCAA GAGGGTCTCC 110688 .......... .......... .......... .......... .......... .......... 205 AGTAAGTCGG CTAACTGCTT ACTTCACCGA AGCTTTAGCT TTGCGTGTTG CGAGGATTTG 110748 .......... .......... .......... .......... .......... .......... 205 GCCTCATATC TTTCACATTA TACCCCCTCG GGACCTTGAT CGTTTAGATG ATGATAGCAG 110808 .......... .......... .......... .......... .......... .......... 205 TACAGCATTG AGGCTGTTGA ATCAGGTTAG TCCAATTCCA AAGTTCATCC ATTTCACATC 110868 .......... .......... .......... .......... .......... .......... 205 AAATGAGATT CTGCTTAGAG CTTTTGAAGG CAAGGACCGG GTTCACATTA TTGATTTTGA 110928 .......... .......... .......... .......... .......... .......... 205 CATTAAGCAA GGGCTGCAGT GGCCTAGCCT GTTTCAGAGT TTGGCTTCTA GGCCCAACCC 110988 .......... .......... .......... .......... .......... .......... 205 TCCTACTCAT GTTAGAATTA CTGGTATAGG AGAATCAAAG CAGGATCTTG TTGAAACAGG 111048 .......... .......... .......... .......... .......... .......... 205 AGATAGACTT GCTGAGTTTG CTGAGGCGTT GAATCTGGCT TTCGAGTTCC ATCCAGTTGT 111108 .......... .......... .......... .......... .......... .......... 205 TGACAGGTTG GAAGATGTAC GGCTATGGAT GCTTCATGTA AAAGAGGGAG AAAGTGTTGC 111168 .......... .......... .......... .......... .......... .......... 205 AGTGAATTGT GTGTTGCAGA TGCATAGGCT TCTATATGAT AGTTCTGGGG GGATCCTGAG 111228 .......... .......... .......... .......... .......... .......... 205 AGACTTTTTG GGGCTGATTA GAAGCACAAA TCCCACCATT ATTCTGATGG CAGAGCAAGA 111288 .......... .......... .......... .......... .......... .......... 205 AGCTGAGCAC AATGAGCCTA GCTTGGAAGC AAGACTTGTC AACTCACTTA GATACTATGC 111348 .......... .......... .......... .......... .......... .......... 205 TGCTGTATTT GATTCTATTG CTTTCGGTCT TCCATTAGAC AGTCCTGCCA GGATTAAGAT 111408 .......... .......... .......... .......... .......... .......... 205 AGAGGAGTTG TTTGCTCGGG ATATTAGAAA TATCATTGCT TGTGAAGGAC GAGATAGGAC 111468 .......... .......... .......... .......... .......... .......... 205 TGAAAGGCAT GAATGCTTTG GGAAATGGCG GAAGTTGATG GAACAAGGGG GTTTCAGATG 111528 .......... .......... .......... .......... .......... .......... 205 CACTGGGATT ACAGAAAGGG AACTGCTTCA GAGTCAAATG CTGTTGAAGA TGTACTCATG 111588 .......... .......... .......... .......... .......... .......... 205 TGAAGACTAC AGGGTCACAA AGCAGGGGAA TGATGATGCT GCACTTACTC TGAGTTGGTT 111648 .......... .......... .......... .......... .......... .......... 205 AGACCAGCCT CTATGCACAG TCTCCGCGTG GACACCCATT GATGCTGCTG GAAGTTCATC 111708 .......... .......... .......... .......... .......... .......... 205 CTCTTATTAT CAGCCAAGTT GATTGATTTT CTTTCGTCGG AACTCTTCAT TCATTGATAG 111768 .......... .......... .......... .......... .......... .......... 205 ACAGACAAGC CGTTGTTCTT TTCGTACACA GGAAAAAAGG TTAACAAATT CTTTGTAGAG 111828 .......... .......... .......... .......... .......... .......... 205 GTAGTGTCAT TCTTTCATTC TTTATTGCAG ATAGATTTGC CAATCTGGTA AGAAAAGAAA 111888 .......... .......... .......... .......... .......... .......... 205 ATCTTTTAGA TAAAAATGCA TAGGCGTCGG GGTTCATTTT GTTTGGGTAC CTTTGATTTC 111948 | |||||| | .......... .......... .......... .......... ........AA ATTTGATAAC 217 ATATTTGTAT TCATTCTTTA TTCTTCTTGT AAGCTAG 111985 ||||||| | | || ||| | || | || || ATATTTGAGT TTTTTTCTTA TGGTTAAATG ATGCAAG 254 hqPGS_C08HBa0197J17.1+_SGN-E261435+ (105473 105644) ******************************************************************************** EST sequence 8 +strand 780 n (File: SGN-E263280+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GGAAAATTGT GGTTATTCAA ATGACAATTA TTATATCCAT TGCGATGCAG 601 CATTATGTGG GCTAATTCTC CCATTTATCA AACATGCAAA AAAAATTACC TTCAAGAAAC 661 CAATTGGAAG TATTTCAATT TCAGGGCACA AATTCTTGGG ATGTCCAATG GTCTTGTGGC 721 GTTCAGATAA CAGGGNAGAG TTACGTTAGC ACCCTCTCAA AAATTGAGTA TATTAATTCC Predicted gene structure (within gDNA segment 104790 to 112646): Exon 1 105473 105644 ( 172 n); cDNA 1 175 ( 175 n); score: 0.849 Intron 1 105645 108523 (2879 n); Pd: 0.000 (s: 0.88), Pa: 0.264 (s: 0) Exon 2 108524 108554 ( 31 n); cDNA 176 205 ( 30 n); score: 0.581 Intron 2 108555 111936 (3382 n); Pd: 0.677 (s: 0), Pa: 0.000 (s: 0.61) Exon 3 111937 111985 ( 49 n); cDNA 206 254 ( 49 n); score: 0.612 MATCH C08HBa0197J17.1+ SGN-E263280+ 0.849 252 0.323 C PGS_C08HBa0197J17.1+_SGN-E263280+ (105473 105644,108524 108554,111937 111985) Alignment (genomic DNA sequence = upper lines): GTGCATTG-- ACTCAAACTC AATGTCTTAT CCATACAAGG CGTGTTAGGC CA-AATTCTA 105529 |||||| | |||||||||| |||||||||| |||||||||| | |||||| || ||||||| GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 60 AAGGACTTGA ACCCAAT-CC TTATCATCAT GGTGCATCAA AACTCAGATT TGATGTCTTA 105588 |||||||| ||||||| || ||||||| || |||||||||| ||||| || | |||||||||| TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTC-GAAT TGATGTCTTA 119 TCCTCTTGGT GCGATAGATT TTAAATCTAT CGTCTTATCC TCAAATATTT TTCATTATAG 105648 ||||||||| |||||||| || |||||| ||||||| || |||||||||| ||||| CCCTCTTGGT GCGATAGAAC TTGAATCTAC CGTCTTACCC TCAAATATTT TTCATA.... 175 TGCATCCGGA CTTTAACCTG ATGTCTTACC CTTTTGGTGC GATGAAACTT GAATCCATCG 105708 .......... .......... .......... .......... .......... .......... 175 TCTTACCCTT AACCAACGGT ATAATAGACC AAAGTACAAC ATGACTCACC CTTTCAGTCT 105768 .......... .......... .......... .......... .......... .......... 175 TTCAAAACAA TCAAAATAAC ATTCAAACTC ATGCTATTAA AATTTTGTAC CTTCTTCTAT 105828 .......... .......... .......... .......... .......... .......... 175 TTAAGAAGTT TTGTATAGCA TGTTATATTC AACCAATAGT AGTATATGTC TTCGGTTCTT 105888 .......... .......... .......... .......... .......... .......... 175 GATAATTGTT AGTGACTGAA TATTATTTTT ATTCTAAATC ATAAAATATT CTAGAAAATA 105948 .......... .......... .......... .......... .......... .......... 175 CATACCTGAT TTTATGCATA TAATACCTTG ATTCTCATAA CGAGATCAAC CAAAACACGA 106008 .......... .......... .......... .......... .......... .......... 175 GTTAATGAAA AAACTAAAAC TCAATCTTAA TTGGCTAGAG ATTCGTGCTG ATAACGTGTT 106068 .......... .......... .......... .......... .......... .......... 175 ATAAAATCAA GCTCATAAGA ATATAATCAT AAAGAGAAGA AGACAAGAGA AGTAGATAGA 106128 .......... .......... .......... .......... .......... .......... 175 AGAGGAATTT TCTTTCTTAT TCAAGTGTAT TCAAGTCTCA TATGTATCTA TTACAATAGT 106188 .......... .......... .......... .......... .......... .......... 175 GAATGAACAA CCCTATTTAT AGAGTGAGAA ATCACTCTAA ACGTCACCAT ATTAAGTATC 106248 .......... .......... .......... .......... .......... .......... 175 ATAATAAATA GATACATTCT TATCCAAAAA GGTTCATGTA ACCTAGTGAA TATGAATGGT 106308 .......... .......... .......... .......... .......... .......... 175 TGTTCATGTA CCAACCTTAT GGACTATGCA CTCATTCAAT GAATTTATAA CAGAATTCAT 106368 .......... .......... .......... .......... .......... .......... 175 GTTTTAATGT TCTTTTTTTA AAGGATGTGA AACGTTTCAA TAATTCAATT AATTTGAAAT 106428 .......... .......... .......... .......... .......... .......... 175 GAAAAGAGTA TACTTTTTAG TAATCTTAGT TTTATACTAT GTTTTGTTAT ATTATTCTCT 106488 .......... .......... .......... .......... .......... .......... 175 CCACATATAT TAATTATTTC GAATAAATTA ATTGTAGTAA GCGCGATGAT AAAAATGGAT 106548 .......... .......... .......... .......... .......... .......... 175 AAAAGAATAC GTGTCTAGTC ACATATTCAA ACCTAACAAG ATATTTGACC AAATCAATGT 106608 .......... .......... .......... .......... .......... .......... 175 GATGGCAATT GGATTTCACA TGTAATACTG AAATTATAGT ACACTAGAAC TTATCTACCT 106668 .......... .......... .......... .......... .......... .......... 175 ACAACGGCAG CAAAGAGTTG TAGACAACTT TTCTTTTATA GTTGTGACAT TCTAATGAGT 106728 .......... .......... .......... .......... .......... .......... 175 TTGTGTGTAT GTTTGATTAG TTTTAGTATA GGTGTCGAAT AGCTTTATTC ATTAAAGCTA 106788 .......... .......... .......... .......... .......... .......... 175 GGATATATGA GAAGATTATT TAGTAATTTT TGGTTAAAGA TAATTTTTTA TTGGTATGTC 106848 .......... .......... .......... .......... .......... .......... 175 TACACAAATA TTATCGTAAG TGCAAGTTTA ATCTTTATCT TGAGCGCAAG TTTAGTTTTC 106908 .......... .......... .......... .......... .......... .......... 175 TTCTTTAACC AATCACTTTT AATTTTTTAC GAAATTCTAA CTCAGCGATT TGCTTACTTC 106968 .......... .......... .......... .......... .......... .......... 175 AATATTATCT CATCTAAAGT TTTAAATTAT TAAACAATTA TTATTATAGT CTTAAATAAA 107028 .......... .......... .......... .......... .......... .......... 175 GGTAACTAAC ATTGTGTGCA TTTATTAATA CAACAATCGT TTTTGGCAAG TTGAATTTAT 107088 .......... .......... .......... .......... .......... .......... 175 CTCAAATAAT TAAGATTTTA GAAGGAAAAA AGGAGGTCAT TTATTTCCAT TTTTGCTATG 107148 .......... .......... .......... .......... .......... .......... 175 TAGTTGAACG TTCACATACT CTTGTGACCG GGGTACTAAA TATTTTTCTT AATATACAAA 107208 .......... .......... .......... .......... .......... .......... 175 TTCTTCCATT CATTTTTTCT TATTTAATTT TGATTTACGT ACCTCTGATA ATAAATAAAA 107268 .......... .......... .......... .......... .......... .......... 175 TAATATTTTA TAATTCAAAA AATATAACAA AAAAATAACT TTAGTTAATA GTAAGGATAA 107328 .......... .......... .......... .......... .......... .......... 175 ATTAGAATTA AGTGATAAAT GAATATATAT TTTGAATATA ATAAATAAGT AAAAATGAAT 107388 .......... .......... .......... .......... .......... .......... 175 CGAGAGAGTA ACAATATATC CAATATAATT CGACAAATGG AACTGTCTAA GGGACGTCAT 107448 .......... .......... .......... .......... .......... .......... 175 GTGTTTGAGG TAGAAATGTT ATTTTTGATA GATCATCACC TTTAGTAAAA TATTTCAAAA 107508 .......... .......... .......... .......... .......... .......... 175 CAACTTTGAA ATGGTTATAC AATAATGTAT AATTCATGTA AAAGAAAACA AAAAAAAAAT 107568 .......... .......... .......... .......... .......... .......... 175 TAATAACAAC AAATATATAA TACAATAAAC GAAACAAAAA AAAATAGCAA GTAATACTAA 107628 .......... .......... .......... .......... .......... .......... 175 TAAAAACTAA ATATATCAAA CTATCTACTA ACTTTCAATT CTAATCCTCG ATCTCCATAT 107688 .......... .......... .......... .......... .......... .......... 175 GTTCGACGGA CTAAAATATT AATCATAAAA TATGTGCAAA AATCATTAAA ATACACATAA 107748 .......... .......... .......... .......... .......... .......... 175 TATGAAACTA TAAAACAAAA GGGATCACTC CAACATTGGT ACGAATCTTT TTGCAACTGG 107808 .......... .......... .......... .......... .......... .......... 175 CCCCCCTTCT TTGTCCTCAT TGATATGTCC ATCATTAAAG CAATCTAATT AATTAATTAA 107868 .......... .......... .......... .......... .......... .......... 175 ACTAAAATAA ATTACAGTCC ACTATCACTG GCCTCTGTAC AGTAATTTCC CTGATTAGTC 107928 .......... .......... .......... .......... .......... .......... 175 AGTTAATAAT TTGTAATTTC CCAGAAAACT TCACTAATTA AAATGGTTAA ACAAAAAAGC 107988 .......... .......... .......... .......... .......... .......... 175 AACGGTCAAG TAAAAAACGG GTATCATGAG ACATGCACGT GCATGGGACG TGACTTCACC 108048 .......... .......... .......... .......... .......... .......... 175 TGCACCCTCT AAAAGAACAA ACAGACAAAA TTAAAAAAAA AAGTTTAATA CATGATCATG 108108 .......... .......... .......... .......... .......... .......... 175 TCTTTTAACT TAATTTCGAA ATATTTTTTT TAACTTTATG CGTGAATAAG TAGATACTTA 108168 .......... .......... .......... .......... .......... .......... 175 AATTTATATA GAATTGAATA AGTAAATTCT ACTTGACGTC CTACGTGATC ATTTGTGTCA 108228 .......... .......... .......... .......... .......... .......... 175 GTGCAGGATT CAGAATTTTC ATTTAGAAAA TTCAAAAAAA AAAAAGTAAT GCTTTTGAAT 108288 .......... .......... .......... .......... .......... .......... 175 ATACAATATA ATTTTTTACT GAGGGCATAC TCTAGGTCCC GCCCTCCCCG GTTTGCGTCT 108348 .......... .......... .......... .......... .......... .......... 175 TACGCTCTTA TTGTATCATA CCAGGTAGAA TGTGTGTGAT TACTTGATCA TTTTTATACA 108408 .......... .......... .......... .......... .......... .......... 175 AATTAAAGTA TTTACTTGTA CACGTTTAAA GCTAAAATAT ATAGATAAAA TAAGACAGAT 108468 .......... .......... .......... .......... .......... .......... 175 AAATTAAAAG TTTTTTTTTT GGTTTGTTAA TTTTATGATA GTTAAAATAA GACAGACAAA 108528 | || .......... .......... .......... .......... .......... .....ATGAA 180 TTAAAATAAG ACAGACAAAT TAAAACGTGA GAAAAAGAAA AATAATTTTT GACACTGTTC 108588 | | |||| || | | | |||| -TGACATAAA TGAGTCTTTT TTAAAC.... .......... .......... .......... 205 CTTATAATAC CAACTCTCTC TCTCAACGGT TATATTCCTC TGACATATAC CTCAACGGTC 108648 .......... .......... .......... .......... .......... .......... 205 ATATTCTTGT TCCTTTTCCA CCGTCTGATT AAGATCGGAC GGTGATAGAT GGAGGTTCCT 108708 .......... .......... .......... .......... .......... .......... 205 CTCTCCCCTT TCTCCAACAT CATCTTTACC AAGCCATGAT TTGTTTCCCT CTGGAAGTAA 108768 .......... .......... .......... .......... .......... .......... 205 AAAACAAGAA GAGGGCTGTT TCAATCTTGA TATATAAAAT AACACAGTTG TATATGGGGT 108828 .......... .......... .......... .......... .......... .......... 205 TTAACTTTTT TGGGTAGTGG GGCTTTGGGA AGTTACTTCT TTTTCTTCAG TTTTTCTCTG 108888 .......... .......... .......... .......... .......... .......... 205 TGGTGATTAT AATGATGATG ATGATGACAG TTGATTTGTC TGTTTACATG CATGTTTGAG 108948 .......... .......... .......... .......... .......... .......... 205 GGCTTAAGGG TCATTATCTT GGGGGGTTGG TGTAGATTTT GGTTTTAGTT TTAGCTAGGA 109008 .......... .......... .......... .......... .......... .......... 205 TTTTCTTGTG GGGGTTGTTT GAAATCTTGT TTGGTGAAAT GGGTTGCATA AAGATTCAAT 109068 .......... .......... .......... .......... .......... .......... 205 TTTTAGGGTG TTGATTGGTG TAGATTTCAG CTAAGCTGGC ATGGGATTGT TGAAAGTGTA 109128 .......... .......... .......... .......... .......... .......... 205 TTTTGCTGAA GTGGGTAGCT CAAAGTTTCA GTTTTTCTGC TGCATTTCTG GGAAAAAATG 109188 .......... .......... .......... .......... .......... .......... 205 TGTTCAGAGT TTCTACATTC ATGGTGTGAG TTCTTCTTCT TTCAATTCTT TGGGAAATCA 109248 .......... .......... .......... .......... .......... .......... 205 TATTTCTAGA TAATGAGTTT TATTGTACTG TGAAAGTTTT GGAATCCGAT GATCTTTTTT 109308 .......... .......... .......... .......... .......... .......... 205 TGGTAGGTAT TAAAATTGTT GATAATAGGA GATTCTTTCC AATTCTTTGA TTCTTTCTAT 109368 .......... .......... .......... .......... .......... .......... 205 TTTGGTGTTT GTGTATTGTT GTTGATTCCA TTCTTTGTTG CATATAGAAA TATTATATAT 109428 .......... .......... .......... .......... .......... .......... 205 AGGACACACA GATATCACAT TTTGTTTTTT TGGCATCGGA TTCCAGTTTT TGTTTTTCTT 109488 .......... .......... .......... .......... .......... .......... 205 GGAACTTCAC ACACACTCAC ATATAGACAT TGTTCTGTTT CTCTTGGATC ATCTATAGAA 109548 .......... .......... .......... .......... .......... .......... 205 ATTTAGCATT ATCATATTGT ATATTTCATA GTGAAAATAT ATACATATAT AGAAAGATAA 109608 .......... .......... .......... .......... .......... .......... 205 GAGAGACAGA GACATAGAGA AGAAAAGGGG TTGGGTGAGT TGGAGTTGAA AAGAAAAGAA 109668 .......... .......... .......... .......... .......... .......... 205 AAAAATTGGA AGGGTGTGAA GAATGTTGGC TGGTTGTTCT TCTTCATTGT TGTCACCTAG 109728 .......... .......... .......... .......... .......... .......... 205 GCATAGATTA AGGAGTGAAG CATCTGCACA GTTTCAAGCT TGTAATTTCC CTTCAATGAG 109788 .......... .......... .......... .......... .......... .......... 205 CACACAAAGA TTGGACTTGC CATGTAGTTT TGCCAGGAAA GATACCTCAA GGTCCCAGTC 109848 .......... .......... .......... .......... .......... .......... 205 CATTAGTAGG CCAGTGGGAC TTTCTGTTGA GAAGCCAATT GAAGCGAAGA ACAGTACTTG 109908 .......... .......... .......... .......... .......... .......... 205 CTCTCTCAAG CAGAACATTC GTCTACCGCC ATCCTCGACA AGTGCTCAGA CATCATATGT 109968 .......... .......... .......... .......... .......... .......... 205 AGAAGGTAGG AGAGAAAGCA AAGATGAATT TTGGGAAAAA GGTAGGAGCT TGAAGAGGTA 110028 .......... .......... .......... .......... .......... .......... 205 TGCTGAGCAG GGATGTATTG ATGATGAGAG CTGCATGAGC AGAGCTAAGA GGAAAAAAAG 110088 .......... .......... .......... .......... .......... .......... 205 TAATAGGAAG TCAGGTGATT CTTCAGAAGA TGGCTATGAT CTGAGTTTGA GCCAATTGGG 110148 .......... .......... .......... .......... .......... .......... 205 TGGTGGCGAT TTCTGGTTAC AATCAGGTTT CAATGCGGCG CGATCAGTTC CCCTAATTGC 110208 .......... .......... .......... .......... .......... .......... 205 AGGCCTTCAT CCACCTCAAG CAGCACCATT CTCCTTTTCT TGTTCCGGAG AGGAAGAGAG 110268 .......... .......... .......... .......... .......... .......... 205 TGTATGTTAT GTGCCAAATG AGGTGATATC ACCACCTCTG CCTATGTCAA ACAATCCTTG 110328 .......... .......... .......... .......... .......... .......... 205 GATTGAATCT GTAGTGACTG AGATTACTAA TTTTGGCGAC AAGAATGTCT CAACAAGTCA 110388 .......... .......... .......... .......... .......... .......... 205 AGATCTTGCC AGAGAGGCCT CAGTATCAAG TGCTTCTTTA GACAGTCATG GCTTGGTTCT 110448 .......... .......... .......... .......... .......... .......... 205 TAGGCCTAAT GAGAATCTCG GGGAGCATGA AGTAGGCAAT GGTTCTAGGC TACCTAATCC 110508 .......... .......... .......... .......... .......... .......... 205 AAATGACAGG GGTGAAGTTG TAACAGCACA TAATGGGCAT AATAACCACA GGGAGGATGA 110568 .......... .......... .......... .......... .......... .......... 205 TGCAGCTGAG CTGATCAGCT TACTTGTGAG TTGTGTTGAA GCAATTGGCT CAAGGAATGT 110628 .......... .......... .......... .......... .......... .......... 205 TACTGGTGTT AATCAACTGA TAGCTAGGCT AGGGCAGCTT GCCTCTCCAA GAGGGTCTCC 110688 .......... .......... .......... .......... .......... .......... 205 AGTAAGTCGG CTAACTGCTT ACTTCACCGA AGCTTTAGCT TTGCGTGTTG CGAGGATTTG 110748 .......... .......... .......... .......... .......... .......... 205 GCCTCATATC TTTCACATTA TACCCCCTCG GGACCTTGAT CGTTTAGATG ATGATAGCAG 110808 .......... .......... .......... .......... .......... .......... 205 TACAGCATTG AGGCTGTTGA ATCAGGTTAG TCCAATTCCA AAGTTCATCC ATTTCACATC 110868 .......... .......... .......... .......... .......... .......... 205 AAATGAGATT CTGCTTAGAG CTTTTGAAGG CAAGGACCGG GTTCACATTA TTGATTTTGA 110928 .......... .......... .......... .......... .......... .......... 205 CATTAAGCAA GGGCTGCAGT GGCCTAGCCT GTTTCAGAGT TTGGCTTCTA GGCCCAACCC 110988 .......... .......... .......... .......... .......... .......... 205 TCCTACTCAT GTTAGAATTA CTGGTATAGG AGAATCAAAG CAGGATCTTG TTGAAACAGG 111048 .......... .......... .......... .......... .......... .......... 205 AGATAGACTT GCTGAGTTTG CTGAGGCGTT GAATCTGGCT TTCGAGTTCC ATCCAGTTGT 111108 .......... .......... .......... .......... .......... .......... 205 TGACAGGTTG GAAGATGTAC GGCTATGGAT GCTTCATGTA AAAGAGGGAG AAAGTGTTGC 111168 .......... .......... .......... .......... .......... .......... 205 AGTGAATTGT GTGTTGCAGA TGCATAGGCT TCTATATGAT AGTTCTGGGG GGATCCTGAG 111228 .......... .......... .......... .......... .......... .......... 205 AGACTTTTTG GGGCTGATTA GAAGCACAAA TCCCACCATT ATTCTGATGG CAGAGCAAGA 111288 .......... .......... .......... .......... .......... .......... 205 AGCTGAGCAC AATGAGCCTA GCTTGGAAGC AAGACTTGTC AACTCACTTA GATACTATGC 111348 .......... .......... .......... .......... .......... .......... 205 TGCTGTATTT GATTCTATTG CTTTCGGTCT TCCATTAGAC AGTCCTGCCA GGATTAAGAT 111408 .......... .......... .......... .......... .......... .......... 205 AGAGGAGTTG TTTGCTCGGG ATATTAGAAA TATCATTGCT TGTGAAGGAC GAGATAGGAC 111468 .......... .......... .......... .......... .......... .......... 205 TGAAAGGCAT GAATGCTTTG GGAAATGGCG GAAGTTGATG GAACAAGGGG GTTTCAGATG 111528 .......... .......... .......... .......... .......... .......... 205 CACTGGGATT ACAGAAAGGG AACTGCTTCA GAGTCAAATG CTGTTGAAGA TGTACTCATG 111588 .......... .......... .......... .......... .......... .......... 205 TGAAGACTAC AGGGTCACAA AGCAGGGGAA TGATGATGCT GCACTTACTC TGAGTTGGTT 111648 .......... .......... .......... .......... .......... .......... 205 AGACCAGCCT CTATGCACAG TCTCCGCGTG GACACCCATT GATGCTGCTG GAAGTTCATC 111708 .......... .......... .......... .......... .......... .......... 205 CTCTTATTAT CAGCCAAGTT GATTGATTTT CTTTCGTCGG AACTCTTCAT TCATTGATAG 111768 .......... .......... .......... .......... .......... .......... 205 ACAGACAAGC CGTTGTTCTT TTCGTACACA GGAAAAAAGG TTAACAAATT CTTTGTAGAG 111828 .......... .......... .......... .......... .......... .......... 205 GTAGTGTCAT TCTTTCATTC TTTATTGCAG ATAGATTTGC CAATCTGGTA AGAAAAGAAA 111888 .......... .......... .......... .......... .......... .......... 205 ATCTTTTAGA TAAAAATGCA TAGGCGTCGG GGTTCATTTT GTTTGGGTAC CTTTGATTTC 111948 | |||||| | .......... .......... .......... .......... ........AA ATTTGATAAC 217 ATATTTGTAT TCATTCTTTA TTCTTCTTGT AAGCTAG 111985 ||||||| | | || ||| | || | || || ATATTTGAGT TTTTTTCTTA TGGTTAAATG ATGCAAG 254 hqPGS_C08HBa0197J17.1+_SGN-E263280+ (105473 105644) ******************************************************************************** EST sequence 63 +strand 778 n (File: SGN-E260587+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAAAGG AGCTATTGAT GACCTCGATT 601 TCGTCATACA AACACTTGAA AATTGTGGTT ATTCAAATGA CAATTATTAT ATCCATTGCG 661 ATGCAGCATT ATGTGGGCTA ATTCTCCCAT TTATCAAACA TGTAAGCTTA TTTTTATTCA 721 ATTTTCCTTC AACGCTCGAT CGAAGTTACN NATGACATAG TTCTTTCTAT GGTATTTG Predicted gene structure (within gDNA segment 104860 to 112696): Exon 1 105480 105644 ( 165 n); cDNA 3 168 ( 166 n); score: 0.879 Intron 1 105645 108523 (2879 n); Pd: 0.000 (s: 0.88), Pa: 0.264 (s: 0) Exon 2 108524 108554 ( 31 n); cDNA 169 198 ( 30 n); score: 0.581 Intron 2 108555 111936 (3382 n); Pd: 0.677 (s: 0), Pa: 0.000 (s: 0.61) Exon 3 111937 111985 ( 49 n); cDNA 199 247 ( 49 n); score: 0.612 MATCH C08HBa0197J17.1+ SGN-E260587+ 0.879 245 0.315 C PGS_C08HBa0197J17.1+_SGN-E260587+ (105480 105644,108524 108554,111937 111985) Alignment (genomic DNA sequence = upper lines): GACTCAAACT CAATGTCTTA TCCATACAAG GCGTGTTAGG CCA-AATTCT AAAGGACTTG 105538 |||||||||| |||||||||| |||||||||| || ||||| ||| |||||| | ||||||| GACTCAAACT CAATGTCTTA TCCATACAAG GCACATTAGG CCATAATTCT ATGGGACTTG 62 AACCCAAT-C CTTATCATCA TGGTGCATCA AAACTCAGAT TTGATGTCTT ATCCTCTTGG 105597 |||||||| | |||||||| | |||||||||| |||||| || |||||||||| | |||||||| AACCCAATAC CTTATCATTA TGGTGCATCA AAACTC-GAA TTGATGTCTT ACCCTCTTGG 121 TGCGATAGAT TTTAAATCTA TCGTCTTATC CTCAAATATT TTTCATTATA GTGCATCCGG 105657 ||||||||| || |||||| ||||||| | |||||||||| |||||| TGCGATAGAA CTTGAATCTA CCGTCTTACC CTCAAATATT TTTCATA... .......... 168 ACTTTAACCT GATGTCTTAC CCTTTTGGTG CGATGAAACT TGAATCCATC GTCTTACCCT 105717 .......... .......... .......... .......... .......... .......... 168 TAACCAACGG TATAATAGAC CAAAGTACAA CATGACTCAC CCTTTCAGTC TTTCAAAACA 105777 .......... .......... .......... .......... .......... .......... 168 ATCAAAATAA CATTCAAACT CATGCTATTA AAATTTTGTA CCTTCTTCTA TTTAAGAAGT 105837 .......... .......... .......... .......... .......... .......... 168 TTTGTATAGC ATGTTATATT CAACCAATAG TAGTATATGT CTTCGGTTCT TGATAATTGT 105897 .......... .......... .......... .......... .......... .......... 168 TAGTGACTGA ATATTATTTT TATTCTAAAT CATAAAATAT TCTAGAAAAT ACATACCTGA 105957 .......... .......... .......... .......... .......... .......... 168 TTTTATGCAT ATAATACCTT GATTCTCATA ACGAGATCAA CCAAAACACG AGTTAATGAA 106017 .......... .......... .......... .......... .......... .......... 168 AAAACTAAAA CTCAATCTTA ATTGGCTAGA GATTCGTGCT GATAACGTGT TATAAAATCA 106077 .......... .......... .......... .......... .......... .......... 168 AGCTCATAAG AATATAATCA TAAAGAGAAG AAGACAAGAG AAGTAGATAG AAGAGGAATT 106137 .......... .......... .......... .......... .......... .......... 168 TTCTTTCTTA TTCAAGTGTA TTCAAGTCTC ATATGTATCT ATTACAATAG TGAATGAACA 106197 .......... .......... .......... .......... .......... .......... 168 ACCCTATTTA TAGAGTGAGA AATCACTCTA AACGTCACCA TATTAAGTAT CATAATAAAT 106257 .......... .......... .......... .......... .......... .......... 168 AGATACATTC TTATCCAAAA AGGTTCATGT AACCTAGTGA ATATGAATGG TTGTTCATGT 106317 .......... .......... .......... .......... .......... .......... 168 ACCAACCTTA TGGACTATGC ACTCATTCAA TGAATTTATA ACAGAATTCA TGTTTTAATG 106377 .......... .......... .......... .......... .......... .......... 168 TTCTTTTTTT AAAGGATGTG AAACGTTTCA ATAATTCAAT TAATTTGAAA TGAAAAGAGT 106437 .......... .......... .......... .......... .......... .......... 168 ATACTTTTTA GTAATCTTAG TTTTATACTA TGTTTTGTTA TATTATTCTC TCCACATATA 106497 .......... .......... .......... .......... .......... .......... 168 TTAATTATTT CGAATAAATT AATTGTAGTA AGCGCGATGA TAAAAATGGA TAAAAGAATA 106557 .......... .......... .......... .......... .......... .......... 168 CGTGTCTAGT CACATATTCA AACCTAACAA GATATTTGAC CAAATCAATG TGATGGCAAT 106617 .......... .......... .......... .......... .......... .......... 168 TGGATTTCAC ATGTAATACT GAAATTATAG TACACTAGAA CTTATCTACC TACAACGGCA 106677 .......... .......... .......... .......... .......... .......... 168 GCAAAGAGTT GTAGACAACT TTTCTTTTAT AGTTGTGACA TTCTAATGAG TTTGTGTGTA 106737 .......... .......... .......... .......... .......... .......... 168 TGTTTGATTA GTTTTAGTAT AGGTGTCGAA TAGCTTTATT CATTAAAGCT AGGATATATG 106797 .......... .......... .......... .......... .......... .......... 168 AGAAGATTAT TTAGTAATTT TTGGTTAAAG ATAATTTTTT ATTGGTATGT CTACACAAAT 106857 .......... .......... .......... .......... .......... .......... 168 ATTATCGTAA GTGCAAGTTT AATCTTTATC TTGAGCGCAA GTTTAGTTTT CTTCTTTAAC 106917 .......... .......... .......... .......... .......... .......... 168 CAATCACTTT TAATTTTTTA CGAAATTCTA ACTCAGCGAT TTGCTTACTT CAATATTATC 106977 .......... .......... .......... .......... .......... .......... 168 TCATCTAAAG TTTTAAATTA TTAAACAATT ATTATTATAG TCTTAAATAA AGGTAACTAA 107037 .......... .......... .......... .......... .......... .......... 168 CATTGTGTGC ATTTATTAAT ACAACAATCG TTTTTGGCAA GTTGAATTTA TCTCAAATAA 107097 .......... .......... .......... .......... .......... .......... 168 TTAAGATTTT AGAAGGAAAA AAGGAGGTCA TTTATTTCCA TTTTTGCTAT GTAGTTGAAC 107157 .......... .......... .......... .......... .......... .......... 168 GTTCACATAC TCTTGTGACC GGGGTACTAA ATATTTTTCT TAATATACAA ATTCTTCCAT 107217 .......... .......... .......... .......... .......... .......... 168 TCATTTTTTC TTATTTAATT TTGATTTACG TACCTCTGAT AATAAATAAA ATAATATTTT 107277 .......... .......... .......... .......... .......... .......... 168 ATAATTCAAA AAATATAACA AAAAAATAAC TTTAGTTAAT AGTAAGGATA AATTAGAATT 107337 .......... .......... .......... .......... .......... .......... 168 AAGTGATAAA TGAATATATA TTTTGAATAT AATAAATAAG TAAAAATGAA TCGAGAGAGT 107397 .......... .......... .......... .......... .......... .......... 168 AACAATATAT CCAATATAAT TCGACAAATG GAACTGTCTA AGGGACGTCA TGTGTTTGAG 107457 .......... .......... .......... .......... .......... .......... 168 GTAGAAATGT TATTTTTGAT AGATCATCAC CTTTAGTAAA ATATTTCAAA ACAACTTTGA 107517 .......... .......... .......... .......... .......... .......... 168 AATGGTTATA CAATAATGTA TAATTCATGT AAAAGAAAAC AAAAAAAAAA TTAATAACAA 107577 .......... .......... .......... .......... .......... .......... 168 CAAATATATA ATACAATAAA CGAAACAAAA AAAAATAGCA AGTAATACTA ATAAAAACTA 107637 .......... .......... .......... .......... .......... .......... 168 AATATATCAA ACTATCTACT AACTTTCAAT TCTAATCCTC GATCTCCATA TGTTCGACGG 107697 .......... .......... .......... .......... .......... .......... 168 ACTAAAATAT TAATCATAAA ATATGTGCAA AAATCATTAA AATACACATA ATATGAAACT 107757 .......... .......... .......... .......... .......... .......... 168 ATAAAACAAA AGGGATCACT CCAACATTGG TACGAATCTT TTTGCAACTG GCCCCCCTTC 107817 .......... .......... .......... .......... .......... .......... 168 TTTGTCCTCA TTGATATGTC CATCATTAAA GCAATCTAAT TAATTAATTA AACTAAAATA 107877 .......... .......... .......... .......... .......... .......... 168 AATTACAGTC CACTATCACT GGCCTCTGTA CAGTAATTTC CCTGATTAGT CAGTTAATAA 107937 .......... .......... .......... .......... .......... .......... 168 TTTGTAATTT CCCAGAAAAC TTCACTAATT AAAATGGTTA AACAAAAAAG CAACGGTCAA 107997 .......... .......... .......... .......... .......... .......... 168 GTAAAAAACG GGTATCATGA GACATGCACG TGCATGGGAC GTGACTTCAC CTGCACCCTC 108057 .......... .......... .......... .......... .......... .......... 168 TAAAAGAACA AACAGACAAA ATTAAAAAAA AAAGTTTAAT ACATGATCAT GTCTTTTAAC 108117 .......... .......... .......... .......... .......... .......... 168 TTAATTTCGA AATATTTTTT TTAACTTTAT GCGTGAATAA GTAGATACTT AAATTTATAT 108177 .......... .......... .......... .......... .......... .......... 168 AGAATTGAAT AAGTAAATTC TACTTGACGT CCTACGTGAT CATTTGTGTC AGTGCAGGAT 108237 .......... .......... .......... .......... .......... .......... 168 TCAGAATTTT CATTTAGAAA ATTCAAAAAA AAAAAAGTAA TGCTTTTGAA TATACAATAT 108297 .......... .......... .......... .......... .......... .......... 168 AATTTTTTAC TGAGGGCATA CTCTAGGTCC CGCCCTCCCC GGTTTGCGTC TTACGCTCTT 108357 .......... .......... .......... .......... .......... .......... 168 ATTGTATCAT ACCAGGTAGA ATGTGTGTGA TTACTTGATC ATTTTTATAC AAATTAAAGT 108417 .......... .......... .......... .......... .......... .......... 168 ATTTACTTGT ACACGTTTAA AGCTAAAATA TATAGATAAA ATAAGACAGA TAAATTAAAA 108477 .......... .......... .......... .......... .......... .......... 168 GTTTTTTTTT TGGTTTGTTA ATTTTATGAT AGTTAAAATA AGACAGACAA ATTAAAATAA 108537 | | | | | |||| .......... .......... .......... .......... ......ATGA A-TGACATAA 181 GACAGACAAA TTAAAACGTG AGAAAAAGAA AAATAATTTT TGACACTGTT CCTTATAATA 108597 || | || |||| ATGAGTCTTT TTTAAAC... .......... .......... .......... .......... 198 CCAACTCTCT CTCTCAACGG TTATATTCCT CTGACATATA CCTCAACGGT CATATTCTTG 108657 .......... .......... .......... .......... .......... .......... 198 TTCCTTTTCC ACCGTCTGAT TAAGATCGGA CGGTGATAGA TGGAGGTTCC TCTCTCCCCT 108717 .......... .......... .......... .......... .......... .......... 198 TTCTCCAACA TCATCTTTAC CAAGCCATGA TTTGTTTCCC TCTGGAAGTA AAAAACAAGA 108777 .......... .......... .......... .......... .......... .......... 198 AGAGGGCTGT TTCAATCTTG ATATATAAAA TAACACAGTT GTATATGGGG TTTAACTTTT 108837 .......... .......... .......... .......... .......... .......... 198 TTGGGTAGTG GGGCTTTGGG AAGTTACTTC TTTTTCTTCA GTTTTTCTCT GTGGTGATTA 108897 .......... .......... .......... .......... .......... .......... 198 TAATGATGAT GATGATGACA GTTGATTTGT CTGTTTACAT GCATGTTTGA GGGCTTAAGG 108957 .......... .......... .......... .......... .......... .......... 198 GTCATTATCT TGGGGGGTTG GTGTAGATTT TGGTTTTAGT TTTAGCTAGG ATTTTCTTGT 109017 .......... .......... .......... .......... .......... .......... 198 GGGGGTTGTT TGAAATCTTG TTTGGTGAAA TGGGTTGCAT AAAGATTCAA TTTTTAGGGT 109077 .......... .......... .......... .......... .......... .......... 198 GTTGATTGGT GTAGATTTCA GCTAAGCTGG CATGGGATTG TTGAAAGTGT ATTTTGCTGA 109137 .......... .......... .......... .......... .......... .......... 198 AGTGGGTAGC TCAAAGTTTC AGTTTTTCTG CTGCATTTCT GGGAAAAAAT GTGTTCAGAG 109197 .......... .......... .......... .......... .......... .......... 198 TTTCTACATT CATGGTGTGA GTTCTTCTTC TTTCAATTCT TTGGGAAATC ATATTTCTAG 109257 .......... .......... .......... .......... .......... .......... 198 ATAATGAGTT TTATTGTACT GTGAAAGTTT TGGAATCCGA TGATCTTTTT TTGGTAGGTA 109317 .......... .......... .......... .......... .......... .......... 198 TTAAAATTGT TGATAATAGG AGATTCTTTC CAATTCTTTG ATTCTTTCTA TTTTGGTGTT 109377 .......... .......... .......... .......... .......... .......... 198 TGTGTATTGT TGTTGATTCC ATTCTTTGTT GCATATAGAA ATATTATATA TAGGACACAC 109437 .......... .......... .......... .......... .......... .......... 198 AGATATCACA TTTTGTTTTT TTGGCATCGG ATTCCAGTTT TTGTTTTTCT TGGAACTTCA 109497 .......... .......... .......... .......... .......... .......... 198 CACACACTCA CATATAGACA TTGTTCTGTT TCTCTTGGAT CATCTATAGA AATTTAGCAT 109557 .......... .......... .......... .......... .......... .......... 198 TATCATATTG TATATTTCAT AGTGAAAATA TATACATATA TAGAAAGATA AGAGAGACAG 109617 .......... .......... .......... .......... .......... .......... 198 AGACATAGAG AAGAAAAGGG GTTGGGTGAG TTGGAGTTGA AAAGAAAAGA AAAAAATTGG 109677 .......... .......... .......... .......... .......... .......... 198 AAGGGTGTGA AGAATGTTGG CTGGTTGTTC TTCTTCATTG TTGTCACCTA GGCATAGATT 109737 .......... .......... .......... .......... .......... .......... 198 AAGGAGTGAA GCATCTGCAC AGTTTCAAGC TTGTAATTTC CCTTCAATGA GCACACAAAG 109797 .......... .......... .......... .......... .......... .......... 198 ATTGGACTTG CCATGTAGTT TTGCCAGGAA AGATACCTCA AGGTCCCAGT CCATTAGTAG 109857 .......... .......... .......... .......... .......... .......... 198 GCCAGTGGGA CTTTCTGTTG AGAAGCCAAT TGAAGCGAAG AACAGTACTT GCTCTCTCAA 109917 .......... .......... .......... .......... .......... .......... 198 GCAGAACATT CGTCTACCGC CATCCTCGAC AAGTGCTCAG ACATCATATG TAGAAGGTAG 109977 .......... .......... .......... .......... .......... .......... 198 GAGAGAAAGC AAAGATGAAT TTTGGGAAAA AGGTAGGAGC TTGAAGAGGT ATGCTGAGCA 110037 .......... .......... .......... .......... .......... .......... 198 GGGATGTATT GATGATGAGA GCTGCATGAG CAGAGCTAAG AGGAAAAAAA GTAATAGGAA 110097 .......... .......... .......... .......... .......... .......... 198 GTCAGGTGAT TCTTCAGAAG ATGGCTATGA TCTGAGTTTG AGCCAATTGG GTGGTGGCGA 110157 .......... .......... .......... .......... .......... .......... 198 TTTCTGGTTA CAATCAGGTT TCAATGCGGC GCGATCAGTT CCCCTAATTG CAGGCCTTCA 110217 .......... .......... .......... .......... .......... .......... 198 TCCACCTCAA GCAGCACCAT TCTCCTTTTC TTGTTCCGGA GAGGAAGAGA GTGTATGTTA 110277 .......... .......... .......... .......... .......... .......... 198 TGTGCCAAAT GAGGTGATAT CACCACCTCT GCCTATGTCA AACAATCCTT GGATTGAATC 110337 .......... .......... .......... .......... .......... .......... 198 TGTAGTGACT GAGATTACTA ATTTTGGCGA CAAGAATGTC TCAACAAGTC AAGATCTTGC 110397 .......... .......... .......... .......... .......... .......... 198 CAGAGAGGCC TCAGTATCAA GTGCTTCTTT AGACAGTCAT GGCTTGGTTC TTAGGCCTAA 110457 .......... .......... .......... .......... .......... .......... 198 TGAGAATCTC GGGGAGCATG AAGTAGGCAA TGGTTCTAGG CTACCTAATC CAAATGACAG 110517 .......... .......... .......... .......... .......... .......... 198 GGGTGAAGTT GTAACAGCAC ATAATGGGCA TAATAACCAC AGGGAGGATG ATGCAGCTGA 110577 .......... .......... .......... .......... .......... .......... 198 GCTGATCAGC TTACTTGTGA GTTGTGTTGA AGCAATTGGC TCAAGGAATG TTACTGGTGT 110637 .......... .......... .......... .......... .......... .......... 198 TAATCAACTG ATAGCTAGGC TAGGGCAGCT TGCCTCTCCA AGAGGGTCTC CAGTAAGTCG 110697 .......... .......... .......... .......... .......... .......... 198 GCTAACTGCT TACTTCACCG AAGCTTTAGC TTTGCGTGTT GCGAGGATTT GGCCTCATAT 110757 .......... .......... .......... .......... .......... .......... 198 CTTTCACATT ATACCCCCTC GGGACCTTGA TCGTTTAGAT GATGATAGCA GTACAGCATT 110817 .......... .......... .......... .......... .......... .......... 198 GAGGCTGTTG AATCAGGTTA GTCCAATTCC AAAGTTCATC CATTTCACAT CAAATGAGAT 110877 .......... .......... .......... .......... .......... .......... 198 TCTGCTTAGA GCTTTTGAAG GCAAGGACCG GGTTCACATT ATTGATTTTG ACATTAAGCA 110937 .......... .......... .......... .......... .......... .......... 198 AGGGCTGCAG TGGCCTAGCC TGTTTCAGAG TTTGGCTTCT AGGCCCAACC CTCCTACTCA 110997 .......... .......... .......... .......... .......... .......... 198 TGTTAGAATT ACTGGTATAG GAGAATCAAA GCAGGATCTT GTTGAAACAG GAGATAGACT 111057 .......... .......... .......... .......... .......... .......... 198 TGCTGAGTTT GCTGAGGCGT TGAATCTGGC TTTCGAGTTC CATCCAGTTG TTGACAGGTT 111117 .......... .......... .......... .......... .......... .......... 198 GGAAGATGTA CGGCTATGGA TGCTTCATGT AAAAGAGGGA GAAAGTGTTG CAGTGAATTG 111177 .......... .......... .......... .......... .......... .......... 198 TGTGTTGCAG ATGCATAGGC TTCTATATGA TAGTTCTGGG GGGATCCTGA GAGACTTTTT 111237 .......... .......... .......... .......... .......... .......... 198 GGGGCTGATT AGAAGCACAA ATCCCACCAT TATTCTGATG GCAGAGCAAG AAGCTGAGCA 111297 .......... .......... .......... .......... .......... .......... 198 CAATGAGCCT AGCTTGGAAG CAAGACTTGT CAACTCACTT AGATACTATG CTGCTGTATT 111357 .......... .......... .......... .......... .......... .......... 198 TGATTCTATT GCTTTCGGTC TTCCATTAGA CAGTCCTGCC AGGATTAAGA TAGAGGAGTT 111417 .......... .......... .......... .......... .......... .......... 198 GTTTGCTCGG GATATTAGAA ATATCATTGC TTGTGAAGGA CGAGATAGGA CTGAAAGGCA 111477 .......... .......... .......... .......... .......... .......... 198 TGAATGCTTT GGGAAATGGC GGAAGTTGAT GGAACAAGGG GGTTTCAGAT GCACTGGGAT 111537 .......... .......... .......... .......... .......... .......... 198 TACAGAAAGG GAACTGCTTC AGAGTCAAAT GCTGTTGAAG ATGTACTCAT GTGAAGACTA 111597 .......... .......... .......... .......... .......... .......... 198 CAGGGTCACA AAGCAGGGGA ATGATGATGC TGCACTTACT CTGAGTTGGT TAGACCAGCC 111657 .......... .......... .......... .......... .......... .......... 198 TCTATGCACA GTCTCCGCGT GGACACCCAT TGATGCTGCT GGAAGTTCAT CCTCTTATTA 111717 .......... .......... .......... .......... .......... .......... 198 TCAGCCAAGT TGATTGATTT TCTTTCGTCG GAACTCTTCA TTCATTGATA GACAGACAAG 111777 .......... .......... .......... .......... .......... .......... 198 CCGTTGTTCT TTTCGTACAC AGGAAAAAAG GTTAACAAAT TCTTTGTAGA GGTAGTGTCA 111837 .......... .......... .......... .......... .......... .......... 198 TTCTTTCATT CTTTATTGCA GATAGATTTG CCAATCTGGT AAGAAAAGAA AATCTTTTAG 111897 .......... .......... .......... .......... .......... .......... 198 ATAAAAATGC ATAGGCGTCG GGGTTCATTT TGTTTGGGTA CCTTTGATTT CATATTTGTA 111957 | |||||| |||||||| .......... .......... .......... .........A AATTTGATAA CATATTTGAG 219 TTCATTCTTT ATTCTTCTTG TAAGCTAG 111985 || || || || || | || || TTTTTTTCTT ATGGTTAAAT GATGCAAG 247 hqPGS_C08HBa0197J17.1+_SGN-E260587+ (105480 105644) ******************************************************************************** EST sequence 64 +strand 740 n (File: SGN-E260602+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAGAGG AGCTATTGAT GACCTCGATT 601 TCGGCATACA AACACTTGAA AATTGTGGTT ATTCAAATGA CAATTATTAT ATCCATTGCG 661 ATGCAGCATT ATGTGGGCTA ATTCTCCCAT TTATCAAACA TGTAAGCTTA TTTTTATTCA 721 TTTTTCCTTC AACGCTCGAT Predicted gene structure (within gDNA segment 104860 to 112916): Exon 1 105480 105644 ( 165 n); cDNA 3 168 ( 166 n); score: 0.879 Intron 1 105645 108523 (2879 n); Pd: 0.000 (s: 0.88), Pa: 0.264 (s: 0) Exon 2 108524 108554 ( 31 n); cDNA 169 198 ( 30 n); score: 0.581 Intron 2 108555 111936 (3382 n); Pd: 0.677 (s: 0), Pa: 0.000 (s: 0.61) Exon 3 111937 111985 ( 49 n); cDNA 199 247 ( 49 n); score: 0.612 MATCH C08HBa0197J17.1+ SGN-E260602+ 0.879 245 0.331 C PGS_C08HBa0197J17.1+_SGN-E260602+ (105480 105644,108524 108554,111937 111985) Alignment (genomic DNA sequence = upper lines): GACTCAAACT CAATGTCTTA TCCATACAAG GCGTGTTAGG CCA-AATTCT AAAGGACTTG 105538 |||||||||| |||||||||| |||||||||| || ||||| ||| |||||| | ||||||| GACTCAAACT CAATGTCTTA TCCATACAAG GCACATTAGG CCATAATTCT ATGGGACTTG 62 AACCCAAT-C CTTATCATCA TGGTGCATCA AAACTCAGAT TTGATGTCTT ATCCTCTTGG 105597 |||||||| | |||||||| | |||||||||| |||||| || |||||||||| | |||||||| AACCCAATAC CTTATCATTA TGGTGCATCA AAACTC-GAA TTGATGTCTT ACCCTCTTGG 121 TGCGATAGAT TTTAAATCTA TCGTCTTATC CTCAAATATT TTTCATTATA GTGCATCCGG 105657 ||||||||| || |||||| ||||||| | |||||||||| |||||| TGCGATAGAA CTTGAATCTA CCGTCTTACC CTCAAATATT TTTCATA... .......... 168 ACTTTAACCT GATGTCTTAC CCTTTTGGTG CGATGAAACT TGAATCCATC GTCTTACCCT 105717 .......... .......... .......... .......... .......... .......... 168 TAACCAACGG TATAATAGAC CAAAGTACAA CATGACTCAC CCTTTCAGTC TTTCAAAACA 105777 .......... .......... .......... .......... .......... .......... 168 ATCAAAATAA CATTCAAACT CATGCTATTA AAATTTTGTA CCTTCTTCTA TTTAAGAAGT 105837 .......... .......... .......... .......... .......... .......... 168 TTTGTATAGC ATGTTATATT CAACCAATAG TAGTATATGT CTTCGGTTCT TGATAATTGT 105897 .......... .......... .......... .......... .......... .......... 168 TAGTGACTGA ATATTATTTT TATTCTAAAT CATAAAATAT TCTAGAAAAT ACATACCTGA 105957 .......... .......... .......... .......... .......... .......... 168 TTTTATGCAT ATAATACCTT GATTCTCATA ACGAGATCAA CCAAAACACG AGTTAATGAA 106017 .......... .......... .......... .......... .......... .......... 168 AAAACTAAAA CTCAATCTTA ATTGGCTAGA GATTCGTGCT GATAACGTGT TATAAAATCA 106077 .......... .......... .......... .......... .......... .......... 168 AGCTCATAAG AATATAATCA TAAAGAGAAG AAGACAAGAG AAGTAGATAG AAGAGGAATT 106137 .......... .......... .......... .......... .......... .......... 168 TTCTTTCTTA TTCAAGTGTA TTCAAGTCTC ATATGTATCT ATTACAATAG TGAATGAACA 106197 .......... .......... .......... .......... .......... .......... 168 ACCCTATTTA TAGAGTGAGA AATCACTCTA AACGTCACCA TATTAAGTAT CATAATAAAT 106257 .......... .......... .......... .......... .......... .......... 168 AGATACATTC TTATCCAAAA AGGTTCATGT AACCTAGTGA ATATGAATGG TTGTTCATGT 106317 .......... .......... .......... .......... .......... .......... 168 ACCAACCTTA TGGACTATGC ACTCATTCAA TGAATTTATA ACAGAATTCA TGTTTTAATG 106377 .......... .......... .......... .......... .......... .......... 168 TTCTTTTTTT AAAGGATGTG AAACGTTTCA ATAATTCAAT TAATTTGAAA TGAAAAGAGT 106437 .......... .......... .......... .......... .......... .......... 168 ATACTTTTTA GTAATCTTAG TTTTATACTA TGTTTTGTTA TATTATTCTC TCCACATATA 106497 .......... .......... .......... .......... .......... .......... 168 TTAATTATTT CGAATAAATT AATTGTAGTA AGCGCGATGA TAAAAATGGA TAAAAGAATA 106557 .......... .......... .......... .......... .......... .......... 168 CGTGTCTAGT CACATATTCA AACCTAACAA GATATTTGAC CAAATCAATG TGATGGCAAT 106617 .......... .......... .......... .......... .......... .......... 168 TGGATTTCAC ATGTAATACT GAAATTATAG TACACTAGAA CTTATCTACC TACAACGGCA 106677 .......... .......... .......... .......... .......... .......... 168 GCAAAGAGTT GTAGACAACT TTTCTTTTAT AGTTGTGACA TTCTAATGAG TTTGTGTGTA 106737 .......... .......... .......... .......... .......... .......... 168 TGTTTGATTA GTTTTAGTAT AGGTGTCGAA TAGCTTTATT CATTAAAGCT AGGATATATG 106797 .......... .......... .......... .......... .......... .......... 168 AGAAGATTAT TTAGTAATTT TTGGTTAAAG ATAATTTTTT ATTGGTATGT CTACACAAAT 106857 .......... .......... .......... .......... .......... .......... 168 ATTATCGTAA GTGCAAGTTT AATCTTTATC TTGAGCGCAA GTTTAGTTTT CTTCTTTAAC 106917 .......... .......... .......... .......... .......... .......... 168 CAATCACTTT TAATTTTTTA CGAAATTCTA ACTCAGCGAT TTGCTTACTT CAATATTATC 106977 .......... .......... .......... .......... .......... .......... 168 TCATCTAAAG TTTTAAATTA TTAAACAATT ATTATTATAG TCTTAAATAA AGGTAACTAA 107037 .......... .......... .......... .......... .......... .......... 168 CATTGTGTGC ATTTATTAAT ACAACAATCG TTTTTGGCAA GTTGAATTTA TCTCAAATAA 107097 .......... .......... .......... .......... .......... .......... 168 TTAAGATTTT AGAAGGAAAA AAGGAGGTCA TTTATTTCCA TTTTTGCTAT GTAGTTGAAC 107157 .......... .......... .......... .......... .......... .......... 168 GTTCACATAC TCTTGTGACC GGGGTACTAA ATATTTTTCT TAATATACAA ATTCTTCCAT 107217 .......... .......... .......... .......... .......... .......... 168 TCATTTTTTC TTATTTAATT TTGATTTACG TACCTCTGAT AATAAATAAA ATAATATTTT 107277 .......... .......... .......... .......... .......... .......... 168 ATAATTCAAA AAATATAACA AAAAAATAAC TTTAGTTAAT AGTAAGGATA AATTAGAATT 107337 .......... .......... .......... .......... .......... .......... 168 AAGTGATAAA TGAATATATA TTTTGAATAT AATAAATAAG TAAAAATGAA TCGAGAGAGT 107397 .......... .......... .......... .......... .......... .......... 168 AACAATATAT CCAATATAAT TCGACAAATG GAACTGTCTA AGGGACGTCA TGTGTTTGAG 107457 .......... .......... .......... .......... .......... .......... 168 GTAGAAATGT TATTTTTGAT AGATCATCAC CTTTAGTAAA ATATTTCAAA ACAACTTTGA 107517 .......... .......... .......... .......... .......... .......... 168 AATGGTTATA CAATAATGTA TAATTCATGT AAAAGAAAAC AAAAAAAAAA TTAATAACAA 107577 .......... .......... .......... .......... .......... .......... 168 CAAATATATA ATACAATAAA CGAAACAAAA AAAAATAGCA AGTAATACTA ATAAAAACTA 107637 .......... .......... .......... .......... .......... .......... 168 AATATATCAA ACTATCTACT AACTTTCAAT TCTAATCCTC GATCTCCATA TGTTCGACGG 107697 .......... .......... .......... .......... .......... .......... 168 ACTAAAATAT TAATCATAAA ATATGTGCAA AAATCATTAA AATACACATA ATATGAAACT 107757 .......... .......... .......... .......... .......... .......... 168 ATAAAACAAA AGGGATCACT CCAACATTGG TACGAATCTT TTTGCAACTG GCCCCCCTTC 107817 .......... .......... .......... .......... .......... .......... 168 TTTGTCCTCA TTGATATGTC CATCATTAAA GCAATCTAAT TAATTAATTA AACTAAAATA 107877 .......... .......... .......... .......... .......... .......... 168 AATTACAGTC CACTATCACT GGCCTCTGTA CAGTAATTTC CCTGATTAGT CAGTTAATAA 107937 .......... .......... .......... .......... .......... .......... 168 TTTGTAATTT CCCAGAAAAC TTCACTAATT AAAATGGTTA AACAAAAAAG CAACGGTCAA 107997 .......... .......... .......... .......... .......... .......... 168 GTAAAAAACG GGTATCATGA GACATGCACG TGCATGGGAC GTGACTTCAC CTGCACCCTC 108057 .......... .......... .......... .......... .......... .......... 168 TAAAAGAACA AACAGACAAA ATTAAAAAAA AAAGTTTAAT ACATGATCAT GTCTTTTAAC 108117 .......... .......... .......... .......... .......... .......... 168 TTAATTTCGA AATATTTTTT TTAACTTTAT GCGTGAATAA GTAGATACTT AAATTTATAT 108177 .......... .......... .......... .......... .......... .......... 168 AGAATTGAAT AAGTAAATTC TACTTGACGT CCTACGTGAT CATTTGTGTC AGTGCAGGAT 108237 .......... .......... .......... .......... .......... .......... 168 TCAGAATTTT CATTTAGAAA ATTCAAAAAA AAAAAAGTAA TGCTTTTGAA TATACAATAT 108297 .......... .......... .......... .......... .......... .......... 168 AATTTTTTAC TGAGGGCATA CTCTAGGTCC CGCCCTCCCC GGTTTGCGTC TTACGCTCTT 108357 .......... .......... .......... .......... .......... .......... 168 ATTGTATCAT ACCAGGTAGA ATGTGTGTGA TTACTTGATC ATTTTTATAC AAATTAAAGT 108417 .......... .......... .......... .......... .......... .......... 168 ATTTACTTGT ACACGTTTAA AGCTAAAATA TATAGATAAA ATAAGACAGA TAAATTAAAA 108477 .......... .......... .......... .......... .......... .......... 168 GTTTTTTTTT TGGTTTGTTA ATTTTATGAT AGTTAAAATA AGACAGACAA ATTAAAATAA 108537 | | | | | |||| .......... .......... .......... .......... ......ATGA A-TGACATAA 181 GACAGACAAA TTAAAACGTG AGAAAAAGAA AAATAATTTT TGACACTGTT CCTTATAATA 108597 || | || |||| ATGAGTCTTT TTTAAAC... .......... .......... .......... .......... 198 CCAACTCTCT CTCTCAACGG TTATATTCCT CTGACATATA CCTCAACGGT CATATTCTTG 108657 .......... .......... .......... .......... .......... .......... 198 TTCCTTTTCC ACCGTCTGAT TAAGATCGGA CGGTGATAGA TGGAGGTTCC TCTCTCCCCT 108717 .......... .......... .......... .......... .......... .......... 198 TTCTCCAACA TCATCTTTAC CAAGCCATGA TTTGTTTCCC TCTGGAAGTA AAAAACAAGA 108777 .......... .......... .......... .......... .......... .......... 198 AGAGGGCTGT TTCAATCTTG ATATATAAAA TAACACAGTT GTATATGGGG TTTAACTTTT 108837 .......... .......... .......... .......... .......... .......... 198 TTGGGTAGTG GGGCTTTGGG AAGTTACTTC TTTTTCTTCA GTTTTTCTCT GTGGTGATTA 108897 .......... .......... .......... .......... .......... .......... 198 TAATGATGAT GATGATGACA GTTGATTTGT CTGTTTACAT GCATGTTTGA GGGCTTAAGG 108957 .......... .......... .......... .......... .......... .......... 198 GTCATTATCT TGGGGGGTTG GTGTAGATTT TGGTTTTAGT TTTAGCTAGG ATTTTCTTGT 109017 .......... .......... .......... .......... .......... .......... 198 GGGGGTTGTT TGAAATCTTG TTTGGTGAAA TGGGTTGCAT AAAGATTCAA TTTTTAGGGT 109077 .......... .......... .......... .......... .......... .......... 198 GTTGATTGGT GTAGATTTCA GCTAAGCTGG CATGGGATTG TTGAAAGTGT ATTTTGCTGA 109137 .......... .......... .......... .......... .......... .......... 198 AGTGGGTAGC TCAAAGTTTC AGTTTTTCTG CTGCATTTCT GGGAAAAAAT GTGTTCAGAG 109197 .......... .......... .......... .......... .......... .......... 198 TTTCTACATT CATGGTGTGA GTTCTTCTTC TTTCAATTCT TTGGGAAATC ATATTTCTAG 109257 .......... .......... .......... .......... .......... .......... 198 ATAATGAGTT TTATTGTACT GTGAAAGTTT TGGAATCCGA TGATCTTTTT TTGGTAGGTA 109317 .......... .......... .......... .......... .......... .......... 198 TTAAAATTGT TGATAATAGG AGATTCTTTC CAATTCTTTG ATTCTTTCTA TTTTGGTGTT 109377 .......... .......... .......... .......... .......... .......... 198 TGTGTATTGT TGTTGATTCC ATTCTTTGTT GCATATAGAA ATATTATATA TAGGACACAC 109437 .......... .......... .......... .......... .......... .......... 198 AGATATCACA TTTTGTTTTT TTGGCATCGG ATTCCAGTTT TTGTTTTTCT TGGAACTTCA 109497 .......... .......... .......... .......... .......... .......... 198 CACACACTCA CATATAGACA TTGTTCTGTT TCTCTTGGAT CATCTATAGA AATTTAGCAT 109557 .......... .......... .......... .......... .......... .......... 198 TATCATATTG TATATTTCAT AGTGAAAATA TATACATATA TAGAAAGATA AGAGAGACAG 109617 .......... .......... .......... .......... .......... .......... 198 AGACATAGAG AAGAAAAGGG GTTGGGTGAG TTGGAGTTGA AAAGAAAAGA AAAAAATTGG 109677 .......... .......... .......... .......... .......... .......... 198 AAGGGTGTGA AGAATGTTGG CTGGTTGTTC TTCTTCATTG TTGTCACCTA GGCATAGATT 109737 .......... .......... .......... .......... .......... .......... 198 AAGGAGTGAA GCATCTGCAC AGTTTCAAGC TTGTAATTTC CCTTCAATGA GCACACAAAG 109797 .......... .......... .......... .......... .......... .......... 198 ATTGGACTTG CCATGTAGTT TTGCCAGGAA AGATACCTCA AGGTCCCAGT CCATTAGTAG 109857 .......... .......... .......... .......... .......... .......... 198 GCCAGTGGGA CTTTCTGTTG AGAAGCCAAT TGAAGCGAAG AACAGTACTT GCTCTCTCAA 109917 .......... .......... .......... .......... .......... .......... 198 GCAGAACATT CGTCTACCGC CATCCTCGAC AAGTGCTCAG ACATCATATG TAGAAGGTAG 109977 .......... .......... .......... .......... .......... .......... 198 GAGAGAAAGC AAAGATGAAT TTTGGGAAAA AGGTAGGAGC TTGAAGAGGT ATGCTGAGCA 110037 .......... .......... .......... .......... .......... .......... 198 GGGATGTATT GATGATGAGA GCTGCATGAG CAGAGCTAAG AGGAAAAAAA GTAATAGGAA 110097 .......... .......... .......... .......... .......... .......... 198 GTCAGGTGAT TCTTCAGAAG ATGGCTATGA TCTGAGTTTG AGCCAATTGG GTGGTGGCGA 110157 .......... .......... .......... .......... .......... .......... 198 TTTCTGGTTA CAATCAGGTT TCAATGCGGC GCGATCAGTT CCCCTAATTG CAGGCCTTCA 110217 .......... .......... .......... .......... .......... .......... 198 TCCACCTCAA GCAGCACCAT TCTCCTTTTC TTGTTCCGGA GAGGAAGAGA GTGTATGTTA 110277 .......... .......... .......... .......... .......... .......... 198 TGTGCCAAAT GAGGTGATAT CACCACCTCT GCCTATGTCA AACAATCCTT GGATTGAATC 110337 .......... .......... .......... .......... .......... .......... 198 TGTAGTGACT GAGATTACTA ATTTTGGCGA CAAGAATGTC TCAACAAGTC AAGATCTTGC 110397 .......... .......... .......... .......... .......... .......... 198 CAGAGAGGCC TCAGTATCAA GTGCTTCTTT AGACAGTCAT GGCTTGGTTC TTAGGCCTAA 110457 .......... .......... .......... .......... .......... .......... 198 TGAGAATCTC GGGGAGCATG AAGTAGGCAA TGGTTCTAGG CTACCTAATC CAAATGACAG 110517 .......... .......... .......... .......... .......... .......... 198 GGGTGAAGTT GTAACAGCAC ATAATGGGCA TAATAACCAC AGGGAGGATG ATGCAGCTGA 110577 .......... .......... .......... .......... .......... .......... 198 GCTGATCAGC TTACTTGTGA GTTGTGTTGA AGCAATTGGC TCAAGGAATG TTACTGGTGT 110637 .......... .......... .......... .......... .......... .......... 198 TAATCAACTG ATAGCTAGGC TAGGGCAGCT TGCCTCTCCA AGAGGGTCTC CAGTAAGTCG 110697 .......... .......... .......... .......... .......... .......... 198 GCTAACTGCT TACTTCACCG AAGCTTTAGC TTTGCGTGTT GCGAGGATTT GGCCTCATAT 110757 .......... .......... .......... .......... .......... .......... 198 CTTTCACATT ATACCCCCTC GGGACCTTGA TCGTTTAGAT GATGATAGCA GTACAGCATT 110817 .......... .......... .......... .......... .......... .......... 198 GAGGCTGTTG AATCAGGTTA GTCCAATTCC AAAGTTCATC CATTTCACAT CAAATGAGAT 110877 .......... .......... .......... .......... .......... .......... 198 TCTGCTTAGA GCTTTTGAAG GCAAGGACCG GGTTCACATT ATTGATTTTG ACATTAAGCA 110937 .......... .......... .......... .......... .......... .......... 198 AGGGCTGCAG TGGCCTAGCC TGTTTCAGAG TTTGGCTTCT AGGCCCAACC CTCCTACTCA 110997 .......... .......... .......... .......... .......... .......... 198 TGTTAGAATT ACTGGTATAG GAGAATCAAA GCAGGATCTT GTTGAAACAG GAGATAGACT 111057 .......... .......... .......... .......... .......... .......... 198 TGCTGAGTTT GCTGAGGCGT TGAATCTGGC TTTCGAGTTC CATCCAGTTG TTGACAGGTT 111117 .......... .......... .......... .......... .......... .......... 198 GGAAGATGTA CGGCTATGGA TGCTTCATGT AAAAGAGGGA GAAAGTGTTG CAGTGAATTG 111177 .......... .......... .......... .......... .......... .......... 198 TGTGTTGCAG ATGCATAGGC TTCTATATGA TAGTTCTGGG GGGATCCTGA GAGACTTTTT 111237 .......... .......... .......... .......... .......... .......... 198 GGGGCTGATT AGAAGCACAA ATCCCACCAT TATTCTGATG GCAGAGCAAG AAGCTGAGCA 111297 .......... .......... .......... .......... .......... .......... 198 CAATGAGCCT AGCTTGGAAG CAAGACTTGT CAACTCACTT AGATACTATG CTGCTGTATT 111357 .......... .......... .......... .......... .......... .......... 198 TGATTCTATT GCTTTCGGTC TTCCATTAGA CAGTCCTGCC AGGATTAAGA TAGAGGAGTT 111417 .......... .......... .......... .......... .......... .......... 198 GTTTGCTCGG GATATTAGAA ATATCATTGC TTGTGAAGGA CGAGATAGGA CTGAAAGGCA 111477 .......... .......... .......... .......... .......... .......... 198 TGAATGCTTT GGGAAATGGC GGAAGTTGAT GGAACAAGGG GGTTTCAGAT GCACTGGGAT 111537 .......... .......... .......... .......... .......... .......... 198 TACAGAAAGG GAACTGCTTC AGAGTCAAAT GCTGTTGAAG ATGTACTCAT GTGAAGACTA 111597 .......... .......... .......... .......... .......... .......... 198 CAGGGTCACA AAGCAGGGGA ATGATGATGC TGCACTTACT CTGAGTTGGT TAGACCAGCC 111657 .......... .......... .......... .......... .......... .......... 198 TCTATGCACA GTCTCCGCGT GGACACCCAT TGATGCTGCT GGAAGTTCAT CCTCTTATTA 111717 .......... .......... .......... .......... .......... .......... 198 TCAGCCAAGT TGATTGATTT TCTTTCGTCG GAACTCTTCA TTCATTGATA GACAGACAAG 111777 .......... .......... .......... .......... .......... .......... 198 CCGTTGTTCT TTTCGTACAC AGGAAAAAAG GTTAACAAAT TCTTTGTAGA GGTAGTGTCA 111837 .......... .......... .......... .......... .......... .......... 198 TTCTTTCATT CTTTATTGCA GATAGATTTG CCAATCTGGT AAGAAAAGAA AATCTTTTAG 111897 .......... .......... .......... .......... .......... .......... 198 ATAAAAATGC ATAGGCGTCG GGGTTCATTT TGTTTGGGTA CCTTTGATTT CATATTTGTA 111957 | |||||| |||||||| .......... .......... .......... .........A AATTTGATAA CATATTTGAG 219 TTCATTCTTT ATTCTTCTTG TAAGCTAG 111985 || || || || || | || || TTTTTTTCTT ATGGTTAAAT GATGCAAG 247 hqPGS_C08HBa0197J17.1+_SGN-E260602+ (105480 105644) ******************************************************************************** EST sequence 26 +strand 716 n (File: SGN-E375221+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAGAGG AGCTATTGAT GACCTCGATT 601 TCGTCATACA AACACTTGAA AATTGTGGTT ATTCAAATGA CAATTATTAT ATCCATTGCG 661 ATGCAGCATT ATGTGGGCTA ATTCTCCCAT TTATCAAACA TGTAAGCTTA TTTTTA Predicted gene structure (within gDNA segment 104860 to 112676): Exon 1 105480 105644 ( 165 n); cDNA 3 168 ( 166 n); score: 0.879 Intron 1 105645 108523 (2879 n); Pd: 0.000 (s: 0.88), Pa: 0.264 (s: 0) Exon 2 108524 108554 ( 31 n); cDNA 169 198 ( 30 n); score: 0.581 Intron 2 108555 111936 (3382 n); Pd: 0.677 (s: 0), Pa: 0.000 (s: 0.61) Exon 3 111937 111985 ( 49 n); cDNA 199 247 ( 49 n); score: 0.612 MATCH C08HBa0197J17.1+ SGN-E375221+ 0.879 245 0.342 C PGS_C08HBa0197J17.1+_SGN-E375221+ (105480 105644,108524 108554,111937 111985) Alignment (genomic DNA sequence = upper lines): GACTCAAACT CAATGTCTTA TCCATACAAG GCGTGTTAGG CCA-AATTCT AAAGGACTTG 105538 |||||||||| |||||||||| |||||||||| || ||||| ||| |||||| | ||||||| GACTCAAACT CAATGTCTTA TCCATACAAG GCACATTAGG CCATAATTCT ATGGGACTTG 62 AACCCAAT-C CTTATCATCA TGGTGCATCA AAACTCAGAT TTGATGTCTT ATCCTCTTGG 105597 |||||||| | |||||||| | |||||||||| |||||| || |||||||||| | |||||||| AACCCAATAC CTTATCATTA TGGTGCATCA AAACTC-GAA TTGATGTCTT ACCCTCTTGG 121 TGCGATAGAT TTTAAATCTA TCGTCTTATC CTCAAATATT TTTCATTATA GTGCATCCGG 105657 ||||||||| || |||||| ||||||| | |||||||||| |||||| TGCGATAGAA CTTGAATCTA CCGTCTTACC CTCAAATATT TTTCATA... .......... 168 ACTTTAACCT GATGTCTTAC CCTTTTGGTG CGATGAAACT TGAATCCATC GTCTTACCCT 105717 .......... .......... .......... .......... .......... .......... 168 TAACCAACGG TATAATAGAC CAAAGTACAA CATGACTCAC CCTTTCAGTC TTTCAAAACA 105777 .......... .......... .......... .......... .......... .......... 168 ATCAAAATAA CATTCAAACT CATGCTATTA AAATTTTGTA CCTTCTTCTA TTTAAGAAGT 105837 .......... .......... .......... .......... .......... .......... 168 TTTGTATAGC ATGTTATATT CAACCAATAG TAGTATATGT CTTCGGTTCT TGATAATTGT 105897 .......... .......... .......... .......... .......... .......... 168 TAGTGACTGA ATATTATTTT TATTCTAAAT CATAAAATAT TCTAGAAAAT ACATACCTGA 105957 .......... .......... .......... .......... .......... .......... 168 TTTTATGCAT ATAATACCTT GATTCTCATA ACGAGATCAA CCAAAACACG AGTTAATGAA 106017 .......... .......... .......... .......... .......... .......... 168 AAAACTAAAA CTCAATCTTA ATTGGCTAGA GATTCGTGCT GATAACGTGT TATAAAATCA 106077 .......... .......... .......... .......... .......... .......... 168 AGCTCATAAG AATATAATCA TAAAGAGAAG AAGACAAGAG AAGTAGATAG AAGAGGAATT 106137 .......... .......... .......... .......... .......... .......... 168 TTCTTTCTTA TTCAAGTGTA TTCAAGTCTC ATATGTATCT ATTACAATAG TGAATGAACA 106197 .......... .......... .......... .......... .......... .......... 168 ACCCTATTTA TAGAGTGAGA AATCACTCTA AACGTCACCA TATTAAGTAT CATAATAAAT 106257 .......... .......... .......... .......... .......... .......... 168 AGATACATTC TTATCCAAAA AGGTTCATGT AACCTAGTGA ATATGAATGG TTGTTCATGT 106317 .......... .......... .......... .......... .......... .......... 168 ACCAACCTTA TGGACTATGC ACTCATTCAA TGAATTTATA ACAGAATTCA TGTTTTAATG 106377 .......... .......... .......... .......... .......... .......... 168 TTCTTTTTTT AAAGGATGTG AAACGTTTCA ATAATTCAAT TAATTTGAAA TGAAAAGAGT 106437 .......... .......... .......... .......... .......... .......... 168 ATACTTTTTA GTAATCTTAG TTTTATACTA TGTTTTGTTA TATTATTCTC TCCACATATA 106497 .......... .......... .......... .......... .......... .......... 168 TTAATTATTT CGAATAAATT AATTGTAGTA AGCGCGATGA TAAAAATGGA TAAAAGAATA 106557 .......... .......... .......... .......... .......... .......... 168 CGTGTCTAGT CACATATTCA AACCTAACAA GATATTTGAC CAAATCAATG TGATGGCAAT 106617 .......... .......... .......... .......... .......... .......... 168 TGGATTTCAC ATGTAATACT GAAATTATAG TACACTAGAA CTTATCTACC TACAACGGCA 106677 .......... .......... .......... .......... .......... .......... 168 GCAAAGAGTT GTAGACAACT TTTCTTTTAT AGTTGTGACA TTCTAATGAG TTTGTGTGTA 106737 .......... .......... .......... .......... .......... .......... 168 TGTTTGATTA GTTTTAGTAT AGGTGTCGAA TAGCTTTATT CATTAAAGCT AGGATATATG 106797 .......... .......... .......... .......... .......... .......... 168 AGAAGATTAT TTAGTAATTT TTGGTTAAAG ATAATTTTTT ATTGGTATGT CTACACAAAT 106857 .......... .......... .......... .......... .......... .......... 168 ATTATCGTAA GTGCAAGTTT AATCTTTATC TTGAGCGCAA GTTTAGTTTT CTTCTTTAAC 106917 .......... .......... .......... .......... .......... .......... 168 CAATCACTTT TAATTTTTTA CGAAATTCTA ACTCAGCGAT TTGCTTACTT CAATATTATC 106977 .......... .......... .......... .......... .......... .......... 168 TCATCTAAAG TTTTAAATTA TTAAACAATT ATTATTATAG TCTTAAATAA AGGTAACTAA 107037 .......... .......... .......... .......... .......... .......... 168 CATTGTGTGC ATTTATTAAT ACAACAATCG TTTTTGGCAA GTTGAATTTA TCTCAAATAA 107097 .......... .......... .......... .......... .......... .......... 168 TTAAGATTTT AGAAGGAAAA AAGGAGGTCA TTTATTTCCA TTTTTGCTAT GTAGTTGAAC 107157 .......... .......... .......... .......... .......... .......... 168 GTTCACATAC TCTTGTGACC GGGGTACTAA ATATTTTTCT TAATATACAA ATTCTTCCAT 107217 .......... .......... .......... .......... .......... .......... 168 TCATTTTTTC TTATTTAATT TTGATTTACG TACCTCTGAT AATAAATAAA ATAATATTTT 107277 .......... .......... .......... .......... .......... .......... 168 ATAATTCAAA AAATATAACA AAAAAATAAC TTTAGTTAAT AGTAAGGATA AATTAGAATT 107337 .......... .......... .......... .......... .......... .......... 168 AAGTGATAAA TGAATATATA TTTTGAATAT AATAAATAAG TAAAAATGAA TCGAGAGAGT 107397 .......... .......... .......... .......... .......... .......... 168 AACAATATAT CCAATATAAT TCGACAAATG GAACTGTCTA AGGGACGTCA TGTGTTTGAG 107457 .......... .......... .......... .......... .......... .......... 168 GTAGAAATGT TATTTTTGAT AGATCATCAC CTTTAGTAAA ATATTTCAAA ACAACTTTGA 107517 .......... .......... .......... .......... .......... .......... 168 AATGGTTATA CAATAATGTA TAATTCATGT AAAAGAAAAC AAAAAAAAAA TTAATAACAA 107577 .......... .......... .......... .......... .......... .......... 168 CAAATATATA ATACAATAAA CGAAACAAAA AAAAATAGCA AGTAATACTA ATAAAAACTA 107637 .......... .......... .......... .......... .......... .......... 168 AATATATCAA ACTATCTACT AACTTTCAAT TCTAATCCTC GATCTCCATA TGTTCGACGG 107697 .......... .......... .......... .......... .......... .......... 168 ACTAAAATAT TAATCATAAA ATATGTGCAA AAATCATTAA AATACACATA ATATGAAACT 107757 .......... .......... .......... .......... .......... .......... 168 ATAAAACAAA AGGGATCACT CCAACATTGG TACGAATCTT TTTGCAACTG GCCCCCCTTC 107817 .......... .......... .......... .......... .......... .......... 168 TTTGTCCTCA TTGATATGTC CATCATTAAA GCAATCTAAT TAATTAATTA AACTAAAATA 107877 .......... .......... .......... .......... .......... .......... 168 AATTACAGTC CACTATCACT GGCCTCTGTA CAGTAATTTC CCTGATTAGT CAGTTAATAA 107937 .......... .......... .......... .......... .......... .......... 168 TTTGTAATTT CCCAGAAAAC TTCACTAATT AAAATGGTTA AACAAAAAAG CAACGGTCAA 107997 .......... .......... .......... .......... .......... .......... 168 GTAAAAAACG GGTATCATGA GACATGCACG TGCATGGGAC GTGACTTCAC CTGCACCCTC 108057 .......... .......... .......... .......... .......... .......... 168 TAAAAGAACA AACAGACAAA ATTAAAAAAA AAAGTTTAAT ACATGATCAT GTCTTTTAAC 108117 .......... .......... .......... .......... .......... .......... 168 TTAATTTCGA AATATTTTTT TTAACTTTAT GCGTGAATAA GTAGATACTT AAATTTATAT 108177 .......... .......... .......... .......... .......... .......... 168 AGAATTGAAT AAGTAAATTC TACTTGACGT CCTACGTGAT CATTTGTGTC AGTGCAGGAT 108237 .......... .......... .......... .......... .......... .......... 168 TCAGAATTTT CATTTAGAAA ATTCAAAAAA AAAAAAGTAA TGCTTTTGAA TATACAATAT 108297 .......... .......... .......... .......... .......... .......... 168 AATTTTTTAC TGAGGGCATA CTCTAGGTCC CGCCCTCCCC GGTTTGCGTC TTACGCTCTT 108357 .......... .......... .......... .......... .......... .......... 168 ATTGTATCAT ACCAGGTAGA ATGTGTGTGA TTACTTGATC ATTTTTATAC AAATTAAAGT 108417 .......... .......... .......... .......... .......... .......... 168 ATTTACTTGT ACACGTTTAA AGCTAAAATA TATAGATAAA ATAAGACAGA TAAATTAAAA 108477 .......... .......... .......... .......... .......... .......... 168 GTTTTTTTTT TGGTTTGTTA ATTTTATGAT AGTTAAAATA AGACAGACAA ATTAAAATAA 108537 | | | | | |||| .......... .......... .......... .......... ......ATGA A-TGACATAA 181 GACAGACAAA TTAAAACGTG AGAAAAAGAA AAATAATTTT TGACACTGTT CCTTATAATA 108597 || | || |||| ATGAGTCTTT TTTAAAC... .......... .......... .......... .......... 198 CCAACTCTCT CTCTCAACGG TTATATTCCT CTGACATATA CCTCAACGGT CATATTCTTG 108657 .......... .......... .......... .......... .......... .......... 198 TTCCTTTTCC ACCGTCTGAT TAAGATCGGA CGGTGATAGA TGGAGGTTCC TCTCTCCCCT 108717 .......... .......... .......... .......... .......... .......... 198 TTCTCCAACA TCATCTTTAC CAAGCCATGA TTTGTTTCCC TCTGGAAGTA AAAAACAAGA 108777 .......... .......... .......... .......... .......... .......... 198 AGAGGGCTGT TTCAATCTTG ATATATAAAA TAACACAGTT GTATATGGGG TTTAACTTTT 108837 .......... .......... .......... .......... .......... .......... 198 TTGGGTAGTG GGGCTTTGGG AAGTTACTTC TTTTTCTTCA GTTTTTCTCT GTGGTGATTA 108897 .......... .......... .......... .......... .......... .......... 198 TAATGATGAT GATGATGACA GTTGATTTGT CTGTTTACAT GCATGTTTGA GGGCTTAAGG 108957 .......... .......... .......... .......... .......... .......... 198 GTCATTATCT TGGGGGGTTG GTGTAGATTT TGGTTTTAGT TTTAGCTAGG ATTTTCTTGT 109017 .......... .......... .......... .......... .......... .......... 198 GGGGGTTGTT TGAAATCTTG TTTGGTGAAA TGGGTTGCAT AAAGATTCAA TTTTTAGGGT 109077 .......... .......... .......... .......... .......... .......... 198 GTTGATTGGT GTAGATTTCA GCTAAGCTGG CATGGGATTG TTGAAAGTGT ATTTTGCTGA 109137 .......... .......... .......... .......... .......... .......... 198 AGTGGGTAGC TCAAAGTTTC AGTTTTTCTG CTGCATTTCT GGGAAAAAAT GTGTTCAGAG 109197 .......... .......... .......... .......... .......... .......... 198 TTTCTACATT CATGGTGTGA GTTCTTCTTC TTTCAATTCT TTGGGAAATC ATATTTCTAG 109257 .......... .......... .......... .......... .......... .......... 198 ATAATGAGTT TTATTGTACT GTGAAAGTTT TGGAATCCGA TGATCTTTTT TTGGTAGGTA 109317 .......... .......... .......... .......... .......... .......... 198 TTAAAATTGT TGATAATAGG AGATTCTTTC CAATTCTTTG ATTCTTTCTA TTTTGGTGTT 109377 .......... .......... .......... .......... .......... .......... 198 TGTGTATTGT TGTTGATTCC ATTCTTTGTT GCATATAGAA ATATTATATA TAGGACACAC 109437 .......... .......... .......... .......... .......... .......... 198 AGATATCACA TTTTGTTTTT TTGGCATCGG ATTCCAGTTT TTGTTTTTCT TGGAACTTCA 109497 .......... .......... .......... .......... .......... .......... 198 CACACACTCA CATATAGACA TTGTTCTGTT TCTCTTGGAT CATCTATAGA AATTTAGCAT 109557 .......... .......... .......... .......... .......... .......... 198 TATCATATTG TATATTTCAT AGTGAAAATA TATACATATA TAGAAAGATA AGAGAGACAG 109617 .......... .......... .......... .......... .......... .......... 198 AGACATAGAG AAGAAAAGGG GTTGGGTGAG TTGGAGTTGA AAAGAAAAGA AAAAAATTGG 109677 .......... .......... .......... .......... .......... .......... 198 AAGGGTGTGA AGAATGTTGG CTGGTTGTTC TTCTTCATTG TTGTCACCTA GGCATAGATT 109737 .......... .......... .......... .......... .......... .......... 198 AAGGAGTGAA GCATCTGCAC AGTTTCAAGC TTGTAATTTC CCTTCAATGA GCACACAAAG 109797 .......... .......... .......... .......... .......... .......... 198 ATTGGACTTG CCATGTAGTT TTGCCAGGAA AGATACCTCA AGGTCCCAGT CCATTAGTAG 109857 .......... .......... .......... .......... .......... .......... 198 GCCAGTGGGA CTTTCTGTTG AGAAGCCAAT TGAAGCGAAG AACAGTACTT GCTCTCTCAA 109917 .......... .......... .......... .......... .......... .......... 198 GCAGAACATT CGTCTACCGC CATCCTCGAC AAGTGCTCAG ACATCATATG TAGAAGGTAG 109977 .......... .......... .......... .......... .......... .......... 198 GAGAGAAAGC AAAGATGAAT TTTGGGAAAA AGGTAGGAGC TTGAAGAGGT ATGCTGAGCA 110037 .......... .......... .......... .......... .......... .......... 198 GGGATGTATT GATGATGAGA GCTGCATGAG CAGAGCTAAG AGGAAAAAAA GTAATAGGAA 110097 .......... .......... .......... .......... .......... .......... 198 GTCAGGTGAT TCTTCAGAAG ATGGCTATGA TCTGAGTTTG AGCCAATTGG GTGGTGGCGA 110157 .......... .......... .......... .......... .......... .......... 198 TTTCTGGTTA CAATCAGGTT TCAATGCGGC GCGATCAGTT CCCCTAATTG CAGGCCTTCA 110217 .......... .......... .......... .......... .......... .......... 198 TCCACCTCAA GCAGCACCAT TCTCCTTTTC TTGTTCCGGA GAGGAAGAGA GTGTATGTTA 110277 .......... .......... .......... .......... .......... .......... 198 TGTGCCAAAT GAGGTGATAT CACCACCTCT GCCTATGTCA AACAATCCTT GGATTGAATC 110337 .......... .......... .......... .......... .......... .......... 198 TGTAGTGACT GAGATTACTA ATTTTGGCGA CAAGAATGTC TCAACAAGTC AAGATCTTGC 110397 .......... .......... .......... .......... .......... .......... 198 CAGAGAGGCC TCAGTATCAA GTGCTTCTTT AGACAGTCAT GGCTTGGTTC TTAGGCCTAA 110457 .......... .......... .......... .......... .......... .......... 198 TGAGAATCTC GGGGAGCATG AAGTAGGCAA TGGTTCTAGG CTACCTAATC CAAATGACAG 110517 .......... .......... .......... .......... .......... .......... 198 GGGTGAAGTT GTAACAGCAC ATAATGGGCA TAATAACCAC AGGGAGGATG ATGCAGCTGA 110577 .......... .......... .......... .......... .......... .......... 198 GCTGATCAGC TTACTTGTGA GTTGTGTTGA AGCAATTGGC TCAAGGAATG TTACTGGTGT 110637 .......... .......... .......... .......... .......... .......... 198 TAATCAACTG ATAGCTAGGC TAGGGCAGCT TGCCTCTCCA AGAGGGTCTC CAGTAAGTCG 110697 .......... .......... .......... .......... .......... .......... 198 GCTAACTGCT TACTTCACCG AAGCTTTAGC TTTGCGTGTT GCGAGGATTT GGCCTCATAT 110757 .......... .......... .......... .......... .......... .......... 198 CTTTCACATT ATACCCCCTC GGGACCTTGA TCGTTTAGAT GATGATAGCA GTACAGCATT 110817 .......... .......... .......... .......... .......... .......... 198 GAGGCTGTTG AATCAGGTTA GTCCAATTCC AAAGTTCATC CATTTCACAT CAAATGAGAT 110877 .......... .......... .......... .......... .......... .......... 198 TCTGCTTAGA GCTTTTGAAG GCAAGGACCG GGTTCACATT ATTGATTTTG ACATTAAGCA 110937 .......... .......... .......... .......... .......... .......... 198 AGGGCTGCAG TGGCCTAGCC TGTTTCAGAG TTTGGCTTCT AGGCCCAACC CTCCTACTCA 110997 .......... .......... .......... .......... .......... .......... 198 TGTTAGAATT ACTGGTATAG GAGAATCAAA GCAGGATCTT GTTGAAACAG GAGATAGACT 111057 .......... .......... .......... .......... .......... .......... 198 TGCTGAGTTT GCTGAGGCGT TGAATCTGGC TTTCGAGTTC CATCCAGTTG TTGACAGGTT 111117 .......... .......... .......... .......... .......... .......... 198 GGAAGATGTA CGGCTATGGA TGCTTCATGT AAAAGAGGGA GAAAGTGTTG CAGTGAATTG 111177 .......... .......... .......... .......... .......... .......... 198 TGTGTTGCAG ATGCATAGGC TTCTATATGA TAGTTCTGGG GGGATCCTGA GAGACTTTTT 111237 .......... .......... .......... .......... .......... .......... 198 GGGGCTGATT AGAAGCACAA ATCCCACCAT TATTCTGATG GCAGAGCAAG AAGCTGAGCA 111297 .......... .......... .......... .......... .......... .......... 198 CAATGAGCCT AGCTTGGAAG CAAGACTTGT CAACTCACTT AGATACTATG CTGCTGTATT 111357 .......... .......... .......... .......... .......... .......... 198 TGATTCTATT GCTTTCGGTC TTCCATTAGA CAGTCCTGCC AGGATTAAGA TAGAGGAGTT 111417 .......... .......... .......... .......... .......... .......... 198 GTTTGCTCGG GATATTAGAA ATATCATTGC TTGTGAAGGA CGAGATAGGA CTGAAAGGCA 111477 .......... .......... .......... .......... .......... .......... 198 TGAATGCTTT GGGAAATGGC GGAAGTTGAT GGAACAAGGG GGTTTCAGAT GCACTGGGAT 111537 .......... .......... .......... .......... .......... .......... 198 TACAGAAAGG GAACTGCTTC AGAGTCAAAT GCTGTTGAAG ATGTACTCAT GTGAAGACTA 111597 .......... .......... .......... .......... .......... .......... 198 CAGGGTCACA AAGCAGGGGA ATGATGATGC TGCACTTACT CTGAGTTGGT TAGACCAGCC 111657 .......... .......... .......... .......... .......... .......... 198 TCTATGCACA GTCTCCGCGT GGACACCCAT TGATGCTGCT GGAAGTTCAT CCTCTTATTA 111717 .......... .......... .......... .......... .......... .......... 198 TCAGCCAAGT TGATTGATTT TCTTTCGTCG GAACTCTTCA TTCATTGATA GACAGACAAG 111777 .......... .......... .......... .......... .......... .......... 198 CCGTTGTTCT TTTCGTACAC AGGAAAAAAG GTTAACAAAT TCTTTGTAGA GGTAGTGTCA 111837 .......... .......... .......... .......... .......... .......... 198 TTCTTTCATT CTTTATTGCA GATAGATTTG CCAATCTGGT AAGAAAAGAA AATCTTTTAG 111897 .......... .......... .......... .......... .......... .......... 198 ATAAAAATGC ATAGGCGTCG GGGTTCATTT TGTTTGGGTA CCTTTGATTT CATATTTGTA 111957 | |||||| |||||||| .......... .......... .......... .........A AATTTGATAA CATATTTGAG 219 TTCATTCTTT ATTCTTCTTG TAAGCTAG 111985 || || || || || | || || TTTTTTTCTT ATGGTTAAAT GATGCAAG 247 hqPGS_C08HBa0197J17.1+_SGN-E375221+ (105480 105644) ******************************************************************************** EST sequence 78 -strand 421 n (File: SGN-E338242-) 1 CGATGAAACT TGAATCAATC GTCTTACCCT TGACCAACGG TATAATAGAC CGAAGTACAA 61 CACGACTCAC CCTTTGAGTC TTTCAAAACA ATCAAAATAA CATTCAAACT CATGCTATTA 121 AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC ATGTCATATT CAACCAATAG 181 TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA ATACTATTTT ATTCTAAATC 241 ATAAAATATT TTAGAAAATA CATACCTGAT CTTATGCAAA TAATACCTTG ATTCTCATAT 301 CGAGATCAAC CAAAACATGA GTTAAAGAAA AAACTAAAAC TCACTCTCAA TTAGCTAGAG 361 ACTCGTGCTG ATAACGTGTT ATAAAAGAAC TTACTAAAAT TCTAAAAGAA AGAAAATATT 421 A Predicted gene structure (within gDNA segment 105078 to 107411): Exon 1 105688 106073 ( 386 n); cDNA 1 385 ( 385 n); score: 0.938 MATCH C08HBa0197J17.1+ SGN-E338242- 0.938 386 0.917 C PGS_C08HBa0197J17.1+_SGN-E338242- (105688 106073) Alignment (genomic DNA sequence = upper lines): CGATGAAACT TGAATCCATC GTCTTACCCT TAACCAACGG TATAATAGAC CAAAGTACAA 105747 |||||||||| |||||| ||| |||||||||| | |||||||| |||||||||| | |||||||| CGATGAAACT TGAATCAATC GTCTTACCCT TGACCAACGG TATAATAGAC CGAAGTACAA 60 CATGACTCAC CCTTTCAGTC TTTCAAAACA ATCAAAATAA CATTCAAACT CATGCTATTA 105807 || ||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CACGACTCAC CCTTTGAGTC TTTCAAAACA ATCAAAATAA CATTCAAACT CATGCTATTA 120 AAATTTTGTA CCTTCTTCTA TTTAAGAAGT TTTGTATAGC ATGTTATATT CAACCAATAG 105867 ||||||| || |||||||| | ||||| |||| ||| |||||| |||| ||||| |||||||||| AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC ATGTCATATT CAACCAATAG 180 TAGTATATGT CTTCGGTTCT TGATAATTGT TAGTGACTGA ATATTATTTT TATTCTAAAT 105927 |||||||||| ||||||||| ||||||||| |||||||||| ||| || ||| |||||||||| TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA ATACTA-TTT TATTCTAAAT 239 CATAAAATAT TCTAGAAAAT ACATACCTGA TTTTATGCAT ATAATACCTT GATTCTCATA 105987 |||||||||| | |||||||| |||||||||| | ||||||| |||||||||| |||||||||| CATAAAATAT TTTAGAAAAT ACATACCTGA TCTTATGCAA ATAATACCTT GATTCTCATA 299 ACGAGATCAA CCAAAACACG AGTTAATGAA AAAACTAAAA CTCAATCTTA ATTGGCTAGA 106047 ||||||||| |||||||| | |||||| ||| |||||||||| |||| ||| | ||| |||||| TCGAGATCAA CCAAAACATG AGTTAAAGAA AAAACTAAAA CTCACTCTCA ATTAGCTAGA 359 GATTCGTGCT GATAACGTGT TATAAA 106073 || ||||||| |||||||||| |||||| GACTCGTGCT GATAACGTGT TATAAA 385 hqPGS_C08HBa0197J17.1+_SGN-E338242- (105688 106073) ******************************************************************************** EST sequence 110 -strand 390 n (File: SGN-E548779-) 1 TATAATAGAC CGAAGTACAA CACGACTCAC CCTCTGAGTC TTTCAAAACA ATCAAAATAA 61 CATTCAAACT CATGCTATTA AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC 121 ATGTCATATT CAACCAATAG TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA 181 ATACTATTTT ATTCTAAATC ATAAAATATT TTAGAAAATA CATACCTGAT CTTATGCAAA 241 TAATACCTTG ATTCTCATAT CGAGATCAAC CAAAACATGA GTTAAAGAAA AAACTAAAAC 301 TCACTCTCAA TTAGCTAGAG ACTCGTGCTG ATAACGTGTT ATAAAAGAAC TTACTAAAAT 361 TCTAAAAAAA AAAAAAAAAC TCGAGACTAG Predicted gene structure (within gDNA segment 104794 to 107501): Exon 1 105728 106073 ( 346 n); cDNA 1 345 ( 345 n); score: 0.934 PPA cDNA 364 380 MATCH C08HBa0197J17.1+ SGN-E548779- 0.934 346 0.887 C PGS_C08HBa0197J17.1+_SGN-E548779- (105728 106073) Alignment (genomic DNA sequence = upper lines): TATAATAGAC CAAAGTACAA CATGACTCAC CCTTTCAGTC TTTCAAAACA ATCAAAATAA 105787 |||||||||| | |||||||| || ||||||| ||| | |||| |||||||||| |||||||||| TATAATAGAC CGAAGTACAA CACGACTCAC CCTCTGAGTC TTTCAAAACA ATCAAAATAA 60 CATTCAAACT CATGCTATTA AAATTTTGTA CCTTCTTCTA TTTAAGAAGT TTTGTATAGC 105847 |||||||||| |||||||||| ||||||| || |||||||| | ||||| |||| ||| |||||| CATTCAAACT CATGCTATTA AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC 120 ATGTTATATT CAACCAATAG TAGTATATGT CTTCGGTTCT TGATAATTGT TAGTGACTGA 105907 |||| ||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| ATGTCATATT CAACCAATAG TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA 180 ATATTATTTT TATTCTAAAT CATAAAATAT TCTAGAAAAT ACATACCTGA TTTTATGCAT 105967 ||| || ||| |||||||||| |||||||||| | |||||||| |||||||||| | ||||||| ATACTA-TTT TATTCTAAAT CATAAAATAT TTTAGAAAAT ACATACCTGA TCTTATGCAA 239 ATAATACCTT GATTCTCATA ACGAGATCAA CCAAAACACG AGTTAATGAA AAAACTAAAA 106027 |||||||||| |||||||||| ||||||||| |||||||| | |||||| ||| |||||||||| ATAATACCTT GATTCTCATA TCGAGATCAA CCAAAACATG AGTTAAAGAA AAAACTAAAA 299 CTCAATCTTA ATTGGCTAGA GATTCGTGCT GATAACGTGT TATAAA 106073 |||| ||| | ||| |||||| || ||||||| |||||||||| |||||| CTCACTCTCA ATTAGCTAGA GACTCGTGCT GATAACGTGT TATAAA 345 hqPGS_C08HBa0197J17.1+_SGN-E548779- (105728 106073) ******************************************************************************** EST sequence 139 -strand 360 n (File: SGN-E301830-) 1 CTTTCAAAAC AATCAAAATA ACATTCAAAC TCAGGCTATT AAAATTTTAC ACCTTCTTCC 61 ATTTAATAAG TTTTATATAG CATGTCATAT TCAACCAATA GTAGGTATAT GTCTTGGGGT 121 TCCTGATAAT GGCTAGGTGA CTGAATACTA TTTTATTCTA AATCATAAAA TATTTTAGAA 181 AATACATACC TGATCTTATG CAAATAATAC CTTGATTCTC ATATCGAGGA TCAACCAAAA 241 CATGGAGGTT AAAGAAAAAA CTAAAACTCA CTCTCAATTA GGCTAGAGAC TCGGTGCTGA 301 TAACGGTGGT TATAAAAGAA CTTACTAAAA TTCTAAAAAA AAAAAAAAAA CTCGAGACTA Predicted gene structure (within gDNA segment 105157 to 107957): Exon 1 105767 106063 ( 297 n); cDNA 1 304 ( 304 n); score: 0.859 PPA cDNA 335 351 MATCH C08HBa0197J17.1+ SGN-E301830- 0.859 297 0.825 C PGS_C08HBa0197J17.1+_SGN-E301830- (105767 106063) Alignment (genomic DNA sequence = upper lines): CTTTCAAAAC AATCAAAATA ACATTCAAAC TCATGCTATT AAAATTTTGT ACCTTCTTCT 105826 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| ||||||||| CTTTCAAAAC AATCAAAATA ACATTCAAAC TCAGGCTATT AAAATTTTAC ACCTTCTTCC 60 ATTTAAGAAG TTTTGTATAG CATGTTATAT TCAACCAATA GTA-GTATAT GTCTT-CGGT 105884 |||||| ||| |||| ||||| ||||| |||| |||||||||| ||| |||||| ||||| ||| ATTTAATAAG TTTTATATAG CATGTCATAT TCAACCAATA GTAGGTATAT GTCTTGGGGT 120 TCTTGATAAT TGTTAG-TGA CTGAATATTA TTTTTATTCT AAATCATAAA ATATTCTAGA 105943 || ||||||| | ||| ||| ||||||| || ||||||||| |||||||||| ||||| |||| TCCTGATAAT GGCTAGGTGA CTGAATACTA -TTTTATTCT AAATCATAAA ATATTTTAGA 179 AAATACATAC CTGATTTTAT GCATATAATA CCTTGATTCT CATAACGA-G ATCAACCAAA 106002 |||||||||| ||||| |||| ||| |||||| |||||||||| |||| ||| | |||||||||| AAATACATAC CTGATCTTAT GCAAATAATA CCTTGATTCT CATATCGAGG ATCAACCAAA 239 ACA-CGA-GT TAATGAAAAA ACTAAAACTC AATCTTAATT -GGCTAGAGA TTC-GTGCTG 106058 ||| || || ||| |||||| |||||||||| | ||| |||| ||||||||| || |||||| ACATGGAGGT TAAAGAAAAA ACTAAAACTC ACTCTCAATT AGGCTAGAGA CTCGGTGCTG 299 ATAAC 106063 ||||| ATAAC 304 hqPGS_C08HBa0197J17.1+_SGN-E301830- (105767 106063) ******************************************************************************** EST sequence 36 +strand 641 n (File: SGN-E556370+) 1 CATTTCTGAA GAGCAAGGAT TCTAGTGACA GTACTGAGCA GGCTCTCCTT GATGAACTAA 61 AGGCTTTGGA AGAGCATCTC AAGGCTCATG GACCATATAT CAATGGGCAG AATGTTTGTT 121 CAGTTGATAT GAGCTTGGCT CCAAAACTGT ACCATCTCGA GGTGGCTCTT GGACACTTCA 181 AGAAGTGGAG TGTGCCTGAA AGCTTGAGTC ATGTGCGTAA CTACATGAAG CTGCTCTTCG 241 AGCGAGAGTC GTTCCAGAAA ACCAAGGCTG AAGAGAAGTA CGTCATCGCA GGGTGGGCTC 301 CAAAGGTTTA ACGTATGACT GACTCGAAAC TATAATCATG TTTTGTCTCG AGTAGTTAGC 361 AGTTCGACGA GTGCAGCTTT ATGAACGTGA TCTATATAGT ATGATCTAAA TAAAAACGTT 421 CATCGTTGGT CTGTGTATCG ATTAATCCTT GTACTGTTTG TGTCTAATAA ACTAAGTTAT 481 CTTCTGAAAC TTTTATTAGT TAATGTAAGG TGTGTTATAA AATCAAGCCC ATAAGAATAT 541 AATCATAAAG AGAAGTAGAT AGAAGAATGA GAATTTTCTT CTTATTCAAG TGTAAAAAAA 601 AAAAAAAAAA AAAAAAAAAT ACTATATAAA TAAAAAAAAA A Predicted gene structure (within gDNA segment 100354 to 107237): Exon 1 103958 103968 ( 11 n); cDNA 437 447 ( 11 n); score: 0.818 Intron 1 103969 104260 ( 292 n); Pd: 0.000 (s: 0), Pa: 0.957 (s: 0.63) Exon 2 104261 104301 ( 41 n); cDNA 448 486 ( 39 n); score: 0.634 Intron 2 104302 104526 ( 225 n); Pd: 0.433 (s: 0.63), Pa: 0.000 (s: 0) Exon 3 104527 104549 ( 23 n); cDNA 487 510 ( 24 n); score: 0.630 Intron 3 104550 106062 (1513 n); Pd: 0.314 (s: 0), Pa: 0.000 (s: 0.92) Exon 4 106063 106119 ( 57 n); cDNA 511 567 ( 57 n); score: 0.895 PPA cDNA 594 621 MATCH C08HBa0197J17.1+ SGN-E556370+ 0.895 132 0.206 C PGS_C08HBa0197J17.1+_SGN-E556370+ (103958 103968,104261 104301,104527 104549,106063 106119) Alignment (genomic DNA sequence = upper lines): ATGCATTAAT CATATAGTTG CAAATGATCC ACATGACAGG TGAACAGGCC CATATTCACC 104017 || |||||| | ATCGATTAAT C......... .......... .......... .......... .......... 447 CTTTTATATG TTCCAAAATT TTTAGGGGAT TACAGTCCTA ACCTTAGCTG GTACAATGAT 104077 .......... .......... .......... .......... .......... .......... 447 CACTTTATCA AGAGAACAAG CAACACAAGA GAATTCTTGA AGAATCTTTA TTTCTTCATC 104137 .......... .......... .......... .......... .......... .......... 447 ATATAAATCA CCTGAATTCT CAATCACGTT TGCATCACAT TTAATCGGAA TGGTCAACCA 104197 .......... .......... .......... .......... .......... .......... 447 GTCATGCCAA CTGATCTTTA TTTTAGTACA CTTATAATTT ACTTTTACAT GTGATTTCAT 104257 .......... .......... .......... .......... .......... .......... 447 CAGCATGTAC ATGTTTGTAT GGAACAAACA AGAGGAAAAG TGGGGTAATC TTTTACATAA 104317 | ||||| ||||||| | || |||| | || | | | ...CTTGTAC -TGTTTGTGT CTAATAAACT A-AGTTATCT TCTG...... .......... 486 ACATTTATAA CCCTCTTCGG TTGTAGTGAT TTATAGTCTC AATATTTATT TTCATTCATC 104377 .......... .......... .......... .......... .......... .......... 486 CGAAACTTAA AAAGTTTCTT TTGAGACTTA CTACAACCCC AATATTATTC CTCTGATAAT 104437 .......... .......... .......... .......... .......... .......... 486 AGCACAACTC GTTAGAGCTT GCAATTAATT TTGTGTACTA TTACATATTG CATGACACCA 104497 .......... .......... .......... .......... .......... .......... 486 TTCCTATGGT GAGCATCTCC TTCAAGGAGG AAATTATATT A-TTATTGTC ATGGTCAAAA 104556 || || |||| | ||| ||| | | .......... .......... .........A AACTTTTATT AGTTAATGTA AGG....... 510 TTATTACGAG CAAGACGTCT TTCTTGCTTT ACTTTTGTTG TACCATAGGT ACACAACCAA 104616 .......... .......... .......... .......... .......... .......... 510 TGACAATTTG TATTGCCACA CAATAATGAC CACAATCCTT ATAGGCAAGA ACTATTTCTT 104676 .......... .......... .......... .......... .......... .......... 510 TCTTTTGCCC TTTCGGTAGT TCATACCATA GTGACGTATA AAACGTACAA TACAATTAGC 104736 .......... .......... .......... .......... .......... .......... 510 CATTTCTGCC AAATAAAATT TATTTCCTCT CAAATCTCCC GTAGAGATGA AAAGTGACAT 104796 .......... .......... .......... .......... .......... .......... 510 GTATCATTTT TTCTCAAACC TTCCATAGAG GTGAGTTGTA ACATATATCC AACCCATAAT 104856 .......... .......... .......... .......... .......... .......... 510 GATTTTATCA TATCTGGACC CATTCTCATA TAGAATGGTC GAGCATTCAC CATACTCATC 104916 .......... .......... .......... .......... .......... .......... 510 ACAAGTCACA TTCTCTTCAA GGAATGGACT AATTATTTAT TTGTATTTCA TAAATTTGCA 104976 .......... .......... .......... .......... .......... .......... 510 TTATAAGCAC ATTGTCATGG CTTTAAAATT CATCATATTT CCATGACACA CCTCAACATC 105036 .......... .......... .......... .......... .......... .......... 510 ACTTTTAAAG ATTAAGTGTA CCATCACTTT ATCTTCTTGT ATCATGATAG AGGATTTATA 105096 .......... .......... .......... .......... .......... .......... 510 AACTTGTCAA ATTATTGGGT CGACAACATT CACAAGTCCA ATGTCCTTTC ATACCATTTT 105156 .......... .......... .......... .......... .......... .......... 510 GATAATGAAA ACTGTCTTCA CATTTTGAAG GACTATTTGG AGAACCCATA GTGTTCTTCC 105216 .......... .......... .......... .......... .......... .......... 510 TTTTATATTT ACCACAATGA TGACTATTAT AATTCCGTCC CTTCATGCCC TTTTTCATAT 105276 .......... .......... .......... .......... .......... .......... 510 CGCTAATCAT TTGTCATCTT TCAGACTAAT TATTTACTGC TACCACATTC ATACGATAGA 105336 .......... .......... .......... .......... .......... .......... 510 ATAGAGCAAG TCAGCATCGG ATTTCAAAGT TATCATATGT TGCTACCACA TTCTTTTCAA 105396 .......... .......... .......... .......... .......... .......... 510 GGAATGGAGC AAGTTCAATA TGACAAATTT CAAAGCTTTT CATCAAAACC TTAGTCATCA 105456 .......... .......... .......... .......... .......... .......... 510 TTGTTTCATC ACTATGGTGC ATTGACTCAA ACTCAATGTC TTATCCATAC AAGGCGTGTT 105516 .......... .......... .......... .......... .......... .......... 510 AGGCCAAATT CTAAAGGACT TGAACCCAAT CCTTATCATC ATGGTGCATC AAAACTCAGA 105576 .......... .......... .......... .......... .......... .......... 510 TTTGATGTCT TATCCTCTTG GTGCGATAGA TTTTAAATCT ATCGTCTTAT CCTCAAATAT 105636 .......... .......... .......... .......... .......... .......... 510 TTTTCATTAT AGTGCATCCG GACTTTAACC TGATGTCTTA CCCTTTTGGT GCGATGAAAC 105696 .......... .......... .......... .......... .......... .......... 510 TTGAATCCAT CGTCTTACCC TTAACCAACG GTATAATAGA CCAAAGTACA ACATGACTCA 105756 .......... .......... .......... .......... .......... .......... 510 CCCTTTCAGT CTTTCAAAAC AATCAAAATA ACATTCAAAC TCATGCTATT AAAATTTTGT 105816 .......... .......... .......... .......... .......... .......... 510 ACCTTCTTCT ATTTAAGAAG TTTTGTATAG CATGTTATAT TCAACCAATA GTAGTATATG 105876 .......... .......... .......... .......... .......... .......... 510 TCTTCGGTTC TTGATAATTG TTAGTGACTG AATATTATTT TTATTCTAAA TCATAAAATA 105936 .......... .......... .......... .......... .......... .......... 510 TTCTAGAAAA TACATACCTG ATTTTATGCA TATAATACCT TGATTCTCAT AACGAGATCA 105996 .......... .......... .......... .......... .......... .......... 510 ACCAAAACAC GAGTTAATGA AAAAACTAAA ACTCAATCTT AATTGGCTAG AGATTCGTGC 106056 .......... .......... .......... .......... .......... .......... 510 TGATAACGTG TTATAAAATC AAGCTCATAA GAATATAATC ATAAAGAGAA GAAGACAAGA 106116 ||| |||||||||| |||| ||||| |||||||||| |||||||||| | ||| | | ......TGTG TTATAAAATC AAGCCCATAA GAATATAATC ATAAAGAGAA GTAGATAGAA 564 GAA 106119 ||| GAA 567 hqPGS_C08HBa0197J17.1+_SGN-E556370+ (106063 106119) ******************************************************************************** EST sequence 10 +strand 545 n (File: SGN-E200029+) 1 GCAAGGACCG GGTTCACATT ATTGATTTTG ACATTAAGCA AGGGCTGCAG TGGCCTAGCC 61 TGTTTCAGAG TTTGGCTTCT AGGCCCAACC CTCCTACTCA TGTTAGAATT ACTGGTATAG 121 GAGAATCAAA GCAGGATCTT GTTGAAACAG GAGATAGACT TGCTGAGTTT GCTGAGGCGT 181 TGAATCTGGC TTTCGAGTTC CATCCAGTTG TTGACAGGTT GGAAGATGTA CGGCTATGGA 241 TGCTTCATGT AAAAGAGGGA GAAAGTGTTG CAGTGAATTG TGTGTTGCAC ATGCATAGGC 301 TTCTATATGA TAGTTCTGGG GGGATCCTGA GAGACTTTTT GGGGCTGATT AGAAGCACAA 361 ATCCCACCAT TATTCTGATG GCAGAGCAAG AAGCTGAGCA CAATGAGCCT AGCTTGGAAG 421 CAAGACTTGT CAACTCACTT AGATACTATG CTGCTGTATT TGATTCTATT GCTTTCGGGC 481 TTCCATTAGA CAGTCCTGCC AGGATTAAGA TAGAGGAGTT GTTTGCTCGG GATATTAGAA 541 ATATC Predicted gene structure (within gDNA segment 110298 to 112052): Exon 1 110898 111442 ( 545 n); cDNA 1 545 ( 545 n); score: 0.996 MATCH C08HBa0197J17.1+ SGN-E200029+ 0.996 545 1.000 C PGS_C08HBa0197J17.1+_SGN-E200029+ (110898 111442) Alignment (genomic DNA sequence = upper lines): GCAAGGACCG GGTTCACATT ATTGATTTTG ACATTAAGCA AGGGCTGCAG TGGCCTAGCC 110957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGGACCG GGTTCACATT ATTGATTTTG ACATTAAGCA AGGGCTGCAG TGGCCTAGCC 60 TGTTTCAGAG TTTGGCTTCT AGGCCCAACC CTCCTACTCA TGTTAGAATT ACTGGTATAG 111017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCAGAG TTTGGCTTCT AGGCCCAACC CTCCTACTCA TGTTAGAATT ACTGGTATAG 120 GAGAATCAAA GCAGGATCTT GTTGAAACAG GAGATAGACT TGCTGAGTTT GCTGAGGCGT 111077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATCAAA GCAGGATCTT GTTGAAACAG GAGATAGACT TGCTGAGTTT GCTGAGGCGT 180 TGAATCTGGC TTTCGAGTTC CATCCAGTTG TTGACAGGTT GGAAGATGTA CGGCTATGGA 111137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATCTGGC TTTCGAGTTC CATCCAGTTG TTGACAGGTT GGAAGATGTA CGGCTATGGA 240 TGCTTCATGT AAAAGAGGGA GAAAGTGTTG CAGTGAATTG TGTGTTGCAG ATGCATAGGC 111197 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TGCTTCATGT AAAAGAGGGA GAAAGTGTTG CAGTGAATTG TGTGTTGCAC ATGCATAGGC 300 TTCTATATGA TAGTTCTGGG GGGATCCTGA GAGACTTTTT GGGGCTGATT AGAAGCACAA 111257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTATATGA TAGTTCTGGG GGGATCCTGA GAGACTTTTT GGGGCTGATT AGAAGCACAA 360 ATCCCACCAT TATTCTGATG GCAGAGCAAG AAGCTGAGCA CAATGAGCCT AGCTTGGAAG 111317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCACCAT TATTCTGATG GCAGAGCAAG AAGCTGAGCA CAATGAGCCT AGCTTGGAAG 420 CAAGACTTGT CAACTCACTT AGATACTATG CTGCTGTATT TGATTCTATT GCTTTCGGTC 111377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | CAAGACTTGT CAACTCACTT AGATACTATG CTGCTGTATT TGATTCTATT GCTTTCGGGC 480 TTCCATTAGA CAGTCCTGCC AGGATTAAGA TAGAGGAGTT GTTTGCTCGG GATATTAGAA 111437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCATTAGA CAGTCCTGCC AGGATTAAGA TAGAGGAGTT GTTTGCTCGG GATATTAGAA 540 ATATC 111442 ||||| ATATC 545 hqPGS_C08HBa0197J17.1+_SGN-E200029+ (110898 111442) ******************************************************************************** EST sequence 84 +strand 549 n (File: SGN-E254420+) 1 CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 61 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 121 AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 181 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTG CAACTGTGAT 241 GAACATGCTG GGTAATGTTC TGATATCCAA GGATATGGTT AATTTGGAGG AAGAAATAGA 301 AGATGGCGAG ATAAAAAGTC TTGTAAGGGG AATAGTGGAA GTGCTCTCTG CTCCAAATAT 361 ATCTGATTTA TATCCTGTTT TAGGAGTTAC TCTTAGCTGG TTCAGACACC ACTACCTCAA 421 CAATTGAGTG GGCGATGGCA GAACTGATAA AGAACGTAGA GTCAATGAAG AAAGTTCAAG 481 AGGAGCTTGA GATAGAACTC AGTGAAAGTG ATTACCTAAA AGAATCTCAA TTGCTGCAGA 541 TGTCCTATA Predicted gene structure (within gDNA segment 114331 to 112165): Exon 1 113731 113350 ( 382 n); cDNA 1 383 ( 383 n); score: 0.993 Intron 1 113349 112941 ( 409 n); Pd: 0.879 (s: 1.00), Pa: 0.666 (s: 1.00) Exon 2 112940 112775 ( 166 n); cDNA 384 549 ( 166 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E254420+ 0.995 548 0.998 C PGS_C08HBa0197J17.1-_SGN-E254420+ (113731 113350,112940 112775) Alignment (genomic DNA sequence = upper lines): CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 113672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 60 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 113612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 120 AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAG-AAAAAA GTGATGGAAT TGGTAGAATT 113553 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 180 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTG CAACTGTGAT 113493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTG CAACTGTGAT 240 GAACATGCTG GGTAATGTTC TGATATCCAA GGATATGGTT AATTTGGAGG AAGAAATAGA 113433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACATGCTG GGTAATGTTC TGATATCCAA GGATATGGTT AATTTGGAGG AAGAAATAGA 300 AGATGGCGAG ATAAAAAGTC TTGTAAGGGG AATAGTGGAA GTGCTCTCTG CTCCAAATAT 113373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGCGAG ATAAAAAGTC TTGTAAGGGG AATAGTGGAA GTGCTCTCTG CTCCAAATAT 360 ATCTGATTTA TATCCTGTTT TAGGTAAATT AGATCTTCAA GGTCTGCAAA AAAAATCTAT 113313 |||||||||| |||||||||| ||| ATCTGATTTA TATCCTGTTT TAG....... .......... .......... .......... 383 AGATTTAGTG ACAAAGCTTT GTTCCAACTG GGAACCGATT CTTGAAGAAA AAAGGAACAG 113253 .......... .......... .......... .......... .......... .......... 383 TAGGAGAACA AGATTTCTTG GTCTCCTTGA TAATGGTTTC ACCAATGATA GTATCCACCA 113193 .......... .......... .......... .......... .......... .......... 383 GTTATTAATG GTTTCTTTAC TCTCCTTCTC TCAGAATTTG ATTTATAAAA TTCATTTTCT 113133 .......... .......... .......... .......... .......... .......... 383 GGTATAAACT AAGTACTTAG TATTTGAAAA ATGAAAATCA AAGTAATCAT GTTAGTCTTG 113073 .......... .......... .......... .......... .......... .......... 383 TGCATATCTG TTGTTATACA ACTAATATTA CCGATGCATT GAACCTTTAG CACTTCTCTT 113013 .......... .......... .......... .......... .......... .......... 383 TTTAACTCGA GAAAGTTGGG AGTTTTCTAT TGGGATGTAG TATTTAACAA GTTTCCTTTT 112953 .......... .......... .......... .......... .......... .......... 383 AACCCTGTGA AGGAGTTACT CTTAGCTGGT TCAGACACCA CTACCTCAAC AATTGAGTGG 112893 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGTTACT CTTAGCTGGT TCAGACACCA CTACCTCAAC AATTGAGTGG 431 GCGATGGCAG AACTGATAAA GAACGTAGAG TCAATGAAGA AAGTTCAAGA GGAGCTTGAG 112833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGATGGCAG AACTGATAAA GAACGTAGAG TCAATGAAGA AAGTTCAAGA GGAGCTTGAG 491 ATAGAACTCA GTGAAAGTGA TTACCTAAAA GAATCTCAAT TGCTGCAGAT GTCCTATA 112775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATAGAACTCA GTGAAAGTGA TTACCTAAAA GAATCTCAAT TGCTGCAGAT GTCCTATA 549 hqPGS_C08HBa0197J17.1-_SGN-E254420+ (113731 113350,112940 112775) ******************************************************************************** EST sequence 28 -strand 721 n (File: SGN-E375456-) 1 GGTTCAGACA CCACTACCTC AACAATTGAG TGGGCGATGG CAGAACTGAT AAAGAACGTA 61 GAGTCAATGA AGAAAGTTCA AGAGGAGCTT GAGATAGAAC TCAGTGAAAG TGATTACCTA 121 AAAGAATCTC AATTGCTGCA GATGTCCTAT ATCCAAGCCT GTGTAAAGGA AACACTTAGG 181 TTGCATCCTC CAGGACCATT GTTGCTTCCA CATCGTGCTA TCAAAACATG CCAAGTGATG 241 AGTTACACAA TTCCTAAAGA CGCGCAAATC TTTGTTAACG TCTGGGCTAT CACAAGGGAT 301 CCTTTGATAT GGGAAGAACC AGACATGTTT AGACCACAGA GGTTTTTGAA TTTTGATATG 361 GATTTCAAAG GGAATGACTT TGAGTACTTA CCCTTTGGTG CAGGACGAAG AATATGCCCA 421 GCCCTGCCAA TGGCTGCAAT AGAAATTCCG TTAGTCCTTG CTTTACTTGT TCGTTTCTTT 481 GATTGGGAAC TTCCTCATGG AAAATGTCCT GTTGAGCTAG ACATGACTGA ACAGTTTGGA 541 GTAACACTAC AAAAGAAAGA ACCGCTGCTT CTGATTCCCA AGGCCAGAAA ATAACCTTGC 601 ACTGTGTGGT GGTGGTAGAT ACTAGTATAT GTTTTCCTTC TGTGTTTGTG TAGTTGTTTA 661 TAGACAAGAC CCATGTGCAA TATATATATA ATATATTTCA TTTGGGTTTT AAAAAAAAAA 721 A Predicted gene structure (within gDNA segment 113535 to 111516): Exon 1 112925 112216 ( 710 n); cDNA 1 711 ( 711 n); score: 0.994 PPA cDNA 712 721 MATCH C08HBa0197J17.1- SGN-E375456- 0.994 710 0.985 C PGS_C08HBa0197J17.1-_SGN-E375456- (112925 112216) Alignment (genomic DNA sequence = upper lines): GGTTCAGACA CCACTACCTC AACAATTGAG TGGGCGATGG CAGAACTGAT AAAGAACGTA 112866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCAGACA CCACTACCTC AACAATTGAG TGGGCGATGG CAGAACTGAT AAAGAACGTA 60 GAGTCAATGA AGAAAGTTCA AGAGGAGCTT GAGATAGAAC TCAGTGAAAG TGATTACCTA 112806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCAATGA AGAAAGTTCA AGAGGAGCTT GAGATAGAAC TCAGTGAAAG TGATTACCTA 120 AAAGAATCTC AATTGCTGCA GATGTCCTAT ATCCAAGCCT GTGTAAAGGA AACACTTAGG 112746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATCTC AATTGCTGCA GATGTCCTAT ATCCAAGCCT GTGTAAAGGA AACACTTAGG 180 TTGCATCCTC CAGGACCATT GTTGCTTCCA CATCGTGCTA TCAAAACATG CCAAGTGATG 112686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCATCCTC CAGGACCATT GTTGCTTCCA CATCGTGCTA TCAAAACATG CCAAGTGATG 240 AGTTACACAA TTCCTAAAGA CGCGCAAATC TTTGTTAACG TCTGGGCTAT CACAAGGGAT 112626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACACAA TTCCTAAAGA CGCGCAAATC TTTGTTAACG TCTGGGCTAT CACAAGGGAT 300 CCTTTGATAT GGGAAGAACC AGACATGTTT AGACCACAGA GGTTTCTGAA TTCTGATATG 112566 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| || ||||||| CCTTTGATAT GGGAAGAACC AGACATGTTT AGACCACAGA GGTTTTTGAA TTTTGATATG 360 GATTTCAAAG GGAATGACTT TGAGTACTTA CCCTTTGGTG CAGGACGAAG AATATGCCCA 112506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTCAAAG GGAATGACTT TGAGTACTTA CCCTTTGGTG CAGGACGAAG AATATGCCCA 420 GCCCTGCCAA TGGCTGCAAT AGAAATTCCG TTAGTCCTTG CTTTACTTGT TCGTTTCTTT 112446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCTGCCAA TGGCTGCAAT AGAAATTCCG TTAGTCCTTG CTTTACTTGT TCGTTTCTTT 480 GATTGGGAAC TTCCTCATGG AAAATGTCCT GTTGAGCTAG ACATGACTGA ACAGTTTGGA 112386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGGGAAC TTCCTCATGG AAAATGTCCT GTTGAGCTAG ACATGACTGA ACAGTTTGGA 540 GTAACACTAC AAAAGAAAGA ACCGCTGCTT CTGATTCCCA AGGCCAGAAA ATAACCTTGC 112326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACACTAC AAAAGAAAGA ACCGCTGCTT CTGATTCCCA AGGCCAGAAA ATAACCTTGC 600 ACTGTGTGGT GGTGGTAGAT ACTAGTATAT GTTTTCCTTC TGTGTTTGTG TAGTTGTTTA 112266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTGTGGT GGTGGTAGAT ACTAGTATAT GTTTTCCTTC TGTGTTTGTG TAGTTGTTTA 660 TAGACAAGA- CCATGTGCAA TATATATATA ATATATTTCA TTTGGGTTTT A 112216 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TAGACAAGAC CCATGTGCAA TATATATATA ATATATTTCA TTTGGGTTTT A 711 hqPGS_C08HBa0197J17.1-_SGN-E375456- (112925 112216) ******************************************************************************** EST sequence 58 -strand 322 n (File: SGN-E391657-) 1 TGGGCGAAGA ATATGCCCAG CCCTGCCAAT GGCTGCAATA GAAATTCCGT TAGTCCTTGC 61 TTTACTTGTT CGTTTCTTTG ATTGGGAACT TCCTCATGGA AAATGTCCTG TTGAGCTAGA 121 CATGACTGAA CAGTTTGGAG TAACACTACA AAAGAAAGAA CCGCTGCTTT TGATTCCCAA 181 GGCCAGAAAA TAACCTTGCA CTGTGTGGTG GTGGTAGATA CTAGTATATG TTTTCCTTCT 241 GTGTTTGTGT AGTTGTTTAT AGACAAGATC CATGTGCAAT ATATATATAA TATATTTCAT 301 TTGGGTTTAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 113170 to 111478): Exon 1 112523 112222 ( 302 n); cDNA 2 304 ( 303 n); score: 0.985 PPA cDNA 309 322 MATCH C08HBa0197J17.1- SGN-E391657- 0.985 302 0.938 C PGS_C08HBa0197J17.1-_SGN-E391657- (112523 112222) Alignment (genomic DNA sequence = upper lines): GGACGAAGAA TATGCCCAGC CCTGCCAATG GCTGCAATAG AAATTCCGTT AGTCCTTGCT 112464 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCGAAGAA TATGCCCAGC CCTGCCAATG GCTGCAATAG AAATTCCGTT AGTCCTTGCT 61 TTACTTGTTC GTTTCTTTGA TTGGGAACTT CCTCATGGAA AATGTCCTGT TGAGCTAGAC 112404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTGTTC GTTTCTTTGA TTGGGAACTT CCTCATGGAA AATGTCCTGT TGAGCTAGAC 121 ATGACTGAAC AGTTTGGAGT AACACTACAA AAGAAAGAAC CGCTGCTTCT GATTCCCAAG 112344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ATGACTGAAC AGTTTGGAGT AACACTACAA AAGAAAGAAC CGCTGCTTTT GATTCCCAAG 181 GCCAGAAAAT AACCTTGCAC TGTGTGGTGG TGGTAGATAC TAGTATATGT TTTCCTTCTG 112284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGAAAAT AACCTTGCAC TGTGTGGTGG TGGTAGATAC TAGTATATGT TTTCCTTCTG 241 TGTTTGTGTA GTTGTTTATA GACAAGA-CC ATGTGCAATA TATATATAAT ATATTTCATT 112225 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TGTTTGTGTA GTTGTTTATA GACAAGATCC ATGTGCAATA TATATATAAT ATATTTCATT 301 TGG 112222 ||| TGG 304 hqPGS_C08HBa0197J17.1-_SGN-E391657- (112523 112222) ******************************************************************************** EST sequence 96 +strand 249 n (File: SGN-E375457+) 1 CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 61 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 121 AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 181 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTT GCACTGTGAT 241 GAACATGCT Predicted gene structure (within gDNA segment 114331 to 112874): Exon 1 113731 113484 ( 248 n); cDNA 1 249 ( 249 n); score: 0.978 MATCH C08HBa0197J17.1- SGN-E375457+ 0.978 248 0.996 C PGS_C08HBa0197J17.1-_SGN-E375457+ (113731 113484) Alignment (genomic DNA sequence = upper lines): CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 113672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 60 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 113612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 120 AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAG-AAAAAA GTGATGGAAT TGGTAGAATT 113553 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 180 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTG CAACTGTGAT 113493 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||| CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTT GCACTGTGAT 240 GAACATGCT 113484 ||||||||| GAACATGCT 249 hqPGS_C08HBa0197J17.1-_SGN-E375457+ (113731 113484) ******************************************************************************** EST sequence 133 +strand 476 n (File: SGN-E391658+) 1 CAATTACAAA TTATGTTCCT GCTTCCACTT TTCCTCTTGG CCTTGACTTT TTTCATCTTC 61 AATATTTTCA GATCATCAAA AACCACACAA CTTCCACCAG GATCAACACC ATGGCCAGTC 121 ATAGGTAGTA TTTTTCAAAT GGTAAAAATG CCTCACATAA CTCTGACAAA TTTAGCAAAA 181 ACTTATGGCC CTGTTATGTC CCTAAAGCTT GGAACTAAAT GGTTAGTTGT TGGATCATCA 241 TCTCTTGCTG CTATAGAAAT CCTCAAAACC CATGATAGAA TTCTGTCAGG GAGAGATGTT 301 CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 361 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT GTGGGGGGGG 421 GGAGTATTGG AGTCTCAAGC TTGTCTGAAG GAGAAAAAAG TGATGGAATT GGTAGA Predicted gene structure (within gDNA segment 114694 to 112946): Exon 1 114031 113556 ( 476 n); cDNA 1 476 ( 476 n); score: 0.979 MATCH C08HBa0197J17.1- SGN-E391658+ 0.979 476 1.000 C PGS_C08HBa0197J17.1-_SGN-E391658+ (114031 113556) Alignment (genomic DNA sequence = upper lines): CAATTAGAAA TTATGTTCCT GCTTCCACTT TTCCTCTTGG CCTTGACTTT TTTCATCTTC 113972 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTACAAA TTATGTTCCT GCTTCCACTT TTCCTCTTGG CCTTGACTTT TTTCATCTTC 60 AATATTTTCA GATCATCAAA AACCACACAA CTTCCACCAG GATCAACACC ATGGCCAGTC 113912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATTTTCA GATCATCAAA AACCACACAA CTTCCACCAG GATCAACACC ATGGCCAGTC 120 ATAGGTAGTA TTTTTCAAAT GGTAAAAATG CCTCACATAA CTCTGACAAA TTTAGCAAAA 113852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGTAGTA TTTTTCAAAT GGTAAAAATG CCTCACATAA CTCTGACAAA TTTAGCAAAA 180 ACTTATGGCC CTGTTATGTC CCTAAAGCTT GGAACTAAAT GGTTAGTTGT TGGATCATCA 113792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTATGGCC CTGTTATGTC CCTAAAGCTT GGAACTAAAT GGTTAGTTGT TGGATCATCA 240 TCTCTTGCTG CTATAGAAAT CCTCAAAACC CATGATAGAA TTCTGTCAGG GAGAGATGTT 113732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTTGCTG CTATAGAAAT CCTCAAAACC CATGATAGAA TTCTGTCAGG GAGAGATGTT 300 CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 113672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 360 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 113612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | | || GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT GTGGGGGGGG 420 AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAG TGATGGAATT GGTAGA 113556 |||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| GGAGTATTGG AGTCTCAAGC TTGTCTGAAG GAGAAAAAAG TGATGGAATT GGTAGA 476 hqPGS_C08HBa0197J17.1-_SGN-E391658+ (114031 113556) ******************************************************************************** EST sequence 125 +strand 469 n (File: SGN-E246615+) 1 AATTAGAAAT TATGTTCCTG CTTCCACTTT TCCTCTTGGC CTTGACTTTT TTCATCTTCA 61 ATATTTTCAG ATCATCAAAA ACCACACAAC TTCCACCAGG ATCAACACCA TGGCCAGTCA 121 TAGGTAGTAT TTTTCAAATG GTAAAAATGC CTCACATAAC TCTGACAAAT TTAGCAAAAA 181 CTTATGGCCC TGTTATGTCC CTAAAGCTTG GAACTAAATG GTTAGTTGTT GGATCATCAT 241 CTCTTGCTGC TATAGAAATC CTCACAACCC ATGATGGAAT TCTGTCAAGG AGAGATGTTC 301 CAAATGCTGC TCCATCAAAA GGGTTAGATC TTGACAAGAC ATCACTGGGC TGGAGATCTG 361 AATGTAACAG TGGATGGAGA TACTTGAGGA CTTTATGCAG AGCCGAGCTT TTCGCTGGAA 421 AAGTATTGGA GTCTCAAGCT TGTCTGAGGG AGAAAAAAGT GATGGAATT Predicted gene structure (within gDNA segment 114630 to 112952): Exon 1 114030 113562 ( 469 n); cDNA 1 469 ( 469 n); score: 0.994 MATCH C08HBa0197J17.1- SGN-E246615+ 0.994 469 1.000 C PGS_C08HBa0197J17.1-_SGN-E246615+ (114030 113562) Alignment (genomic DNA sequence = upper lines): AATTAGAAAT TATGTTCCTG CTTCCACTTT TCCTCTTGGC CTTGACTTTT TTCATCTTCA 113971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTAGAAAT TATGTTCCTG CTTCCACTTT TCCTCTTGGC CTTGACTTTT TTCATCTTCA 60 ATATTTTCAG ATCATCAAAA ACCACACAAC TTCCACCAGG ATCAACACCA TGGCCAGTCA 113911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTTCAG ATCATCAAAA ACCACACAAC TTCCACCAGG ATCAACACCA TGGCCAGTCA 120 TAGGTAGTAT TTTTCAAATG GTAAAAATGC CTCACATAAC TCTGACAAAT TTAGCAAAAA 113851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGTAGTAT TTTTCAAATG GTAAAAATGC CTCACATAAC TCTGACAAAT TTAGCAAAAA 180 CTTATGGCCC TGTTATGTCC CTAAAGCTTG GAACTAAATG GTTAGTTGTT GGATCATCAT 113791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATGGCCC TGTTATGTCC CTAAAGCTTG GAACTAAATG GTTAGTTGTT GGATCATCAT 240 CTCTTGCTGC TATAGAAATC CTCAAAACCC ATGATAGAAT TCTGTCAGGG AGAGATGTTC 113731 |||||||||| |||||||||| |||| ||||| ||||| |||| ||||||| || |||||||||| CTCTTGCTGC TATAGAAATC CTCACAACCC ATGATGGAAT TCTGTCAAGG AGAGATGTTC 300 CAAATGCTGC TCCATCAAAA GGGTTAGATC TTGACAAGAC ATCACTGGGC TGGAGATCTG 113671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGCTGC TCCATCAAAA GGGTTAGATC TTGACAAGAC ATCACTGGGC TGGAGATCTG 360 AATGTAACAG TGGATGGAGA TACTTGAGGA CTTTATGCAG AGCCGAGCTT TTCGCTGGAA 113611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAACAG TGGATGGAGA TACTTGAGGA CTTTATGCAG AGCCGAGCTT TTCGCTGGAA 420 AAGTATTGGA GTCTCAAGCT TGTCTGAGGG AGAAAAAAGT GATGGAATT 113562 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGTATTGGA GTCTCAAGCT TGTCTGAGGG AGAAAAAAGT GATGGAATT 469 hqPGS_C08HBa0197J17.1-_SGN-E246615+ (114030 113562) ******************************************************************************** EST sequence 14 -strand 459 n (File: SGN-E539348-) 1 CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 61 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 121 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 181 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 241 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 301 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 361 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 421 GAACAGTATT CACANAGATG ATTATCACAA AAAAAAAAA Predicted gene structure (within gDNA segment 115576 to 113837): Exon 1 114966 114517 ( 450 n); cDNA 1 451 ( 451 n); score: 0.994 MATCH C08HBa0197J17.1- SGN-E539348- 0.994 450 0.980 C PGS_C08HBa0197J17.1-_SGN-E539348- (114966 114517) Alignment (genomic DNA sequence = upper lines): CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 114907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 60 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 114847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 120 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 114787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 180 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 114727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 240 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 114667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 300 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 114607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 360 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 114547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 420 GAACAGTATT CACA-AGATG ATTATCACAA A 114517 |||||||||| |||| ||||| |||||||||| | GAACAGTATT CACANAGATG ATTATCACAA A 451 hqPGS_C08HBa0197J17.1-_SGN-E539348- (114966 114517) ******************************************************************************** EST sequence 15 -strand 458 n (File: SGN-E539430-) 1 CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 61 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 121 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 181 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 241 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 301 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 361 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 421 GAACAGTATT CACAAGATGA TTATCACAAA AAGAAAAA Predicted gene structure (within gDNA segment 115576 to 113837): Exon 1 114966 114517 ( 450 n); cDNA 1 450 ( 450 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E539430- 1.000 450 0.983 C PGS_C08HBa0197J17.1-_SGN-E539430- (114966 114517) Alignment (genomic DNA sequence = upper lines): CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 114907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 60 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 114847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 120 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 114787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 180 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 114727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 240 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 114667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 300 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 114607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 360 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 114547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 420 GAACAGTATT CACAAGATGA TTATCACAAA 114517 |||||||||| |||||||||| |||||||||| GAACAGTATT CACAAGATGA TTATCACAAA 450 hqPGS_C08HBa0197J17.1-_SGN-E539430- (114966 114517) ******************************************************************************** EST sequence 82 +strand 458 n (File: SGN-E548206+) 1 CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 61 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 121 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 181 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 241 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 301 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 361 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 421 GAACAGTATT CACAAGATGA TTATCACAAA AAAAAAAA Predicted gene structure (within gDNA segment 115566 to 113827): Exon 1 114966 114517 ( 450 n); cDNA 1 450 ( 450 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E548206+ 1.000 450 0.983 C PGS_C08HBa0197J17.1-_SGN-E548206+ (114966 114517) Alignment (genomic DNA sequence = upper lines): CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 114907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 60 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 114847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 120 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 114787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 180 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 114727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 240 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 114667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 300 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 114607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 360 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 114547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 420 GAACAGTATT CACAAGATGA TTATCACAAA 114517 |||||||||| |||||||||| |||||||||| GAACAGTATT CACAAGATGA TTATCACAAA 450 hqPGS_C08HBa0197J17.1-_SGN-E548206+ (114966 114517) ******************************************************************************** EST sequence 83 +strand 458 n (File: SGN-E539433+) 1 CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 61 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 121 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 181 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 241 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 301 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 361 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 421 GAACAGTATT CACAAGATGA TTATCACAAA AAAAAAAA Predicted gene structure (within gDNA segment 115566 to 113827): Exon 1 114966 114517 ( 450 n); cDNA 1 450 ( 450 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E539433+ 1.000 450 0.983 C PGS_C08HBa0197J17.1-_SGN-E539433+ (114966 114517) Alignment (genomic DNA sequence = upper lines): CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 114907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAATTT GTTTACCTTT TCCCTCTGTA CAGAATGAAC AACAGTTGTG TGTCTATGAC 60 TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 114847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGAAGA GCTTTGTCAA AAGAACAATC AATAAACTTG GCTGATAATA AGAGGATGAA 120 CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 114787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCATCAG CATCAAGGGG TGCTTAAACG GGGACTGTGT GCAGCACTGT CGTCCTCTGC 180 TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 114727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATCC TGTAGTCCTC ACATGAATAC ATCTTCAACA GTTCCCTTTT GTGTTATCCC 240 TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 114667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCATTAG ATACAAGTAT TTCTTGTCCT CCTGTAATAT CGTGTAATCA TAAACAGAAG 300 TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 114607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGGT GATAAGAGAC AAGTTATAGT CCTATTAAGA CAAGATCATG TGTCAAGTTG 360 CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 114547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATTTCC AAGTAAAAAT GTTTCACTTG GGTGTACTCT CCTTACCATT GATGAGAATG 420 GAACAGTATT CACAAGATGA TTATCACAAA 114517 |||||||||| |||||||||| |||||||||| GAACAGTATT CACAAGATGA TTATCACAAA 450 hqPGS_C08HBa0197J17.1-_SGN-E539433+ (114966 114517) ******************************************************************************** EST sequence 142 +strand 457 n (File: SGN-E281666+) 1 AAAGAATTTG TTTACCTTTT CCCTCTGTAC AGAATGAACA ACAGTTGTGT GTCTATGACT 61 AAATGAAGAG CTTTGTCAAA AGAACAATCA ATAAACTTGG CTGATAATAA GAGGATGAAC 121 TTCCATCAGC ATCAAGGGGT GCTTAAACGG GGACTGTGTG CAGCACTGTC GTCCTCTGCT 181 TTGTGATCCT GTAGTCCTCA CATGAATACA TCTTCAACAG TTCCCTTTTG TGTTATCCCT 241 GTGCATTAGA TACAAGTATT TCTTGTCCTC CTGTAATATC GTGTAATCAT AAACAGAAGT 301 TCTTTTGGTG ATAAGAGACA AGTTATAGTC CTATTAAGAC AAGATCATGT GTCAAGTTGC 361 ATGATTTCCA AGTAAAAATG TTTCACTTGG GTGTACTCTC CTTACCATTG ATGAGAATGG 421 AACAGTATTC ACAAGATGAT TATCACAAAA AAAAAAA Predicted gene structure (within gDNA segment 115565 to 113827): Exon 1 114965 114517 ( 449 n); cDNA 1 449 ( 449 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E281666+ 1.000 449 0.982 C PGS_C08HBa0197J17.1-_SGN-E281666+ (114965 114517) Alignment (genomic DNA sequence = upper lines): AAAGAATTTG TTTACCTTTT CCCTCTGTAC AGAATGAACA ACAGTTGTGT GTCTATGACT 114906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATTTG TTTACCTTTT CCCTCTGTAC AGAATGAACA ACAGTTGTGT GTCTATGACT 60 AAATGAAGAG CTTTGTCAAA AGAACAATCA ATAAACTTGG CTGATAATAA GAGGATGAAC 114846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGAAGAG CTTTGTCAAA AGAACAATCA ATAAACTTGG CTGATAATAA GAGGATGAAC 120 TTCCATCAGC ATCAAGGGGT GCTTAAACGG GGACTGTGTG CAGCACTGTC GTCCTCTGCT 114786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCATCAGC ATCAAGGGGT GCTTAAACGG GGACTGTGTG CAGCACTGTC GTCCTCTGCT 180 TTGTGATCCT GTAGTCCTCA CATGAATACA TCTTCAACAG TTCCCTTTTG TGTTATCCCT 114726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGATCCT GTAGTCCTCA CATGAATACA TCTTCAACAG TTCCCTTTTG TGTTATCCCT 240 GTGCATTAGA TACAAGTATT TCTTGTCCTC CTGTAATATC GTGTAATCAT AAACAGAAGT 114666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCATTAGA TACAAGTATT TCTTGTCCTC CTGTAATATC GTGTAATCAT AAACAGAAGT 300 TCTTTTGGTG ATAAGAGACA AGTTATAGTC CTATTAAGAC AAGATCATGT GTCAAGTTGC 114606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTGGTG ATAAGAGACA AGTTATAGTC CTATTAAGAC AAGATCATGT GTCAAGTTGC 360 ATGATTTCCA AGTAAAAATG TTTCACTTGG GTGTACTCTC CTTACCATTG ATGAGAATGG 114546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTTCCA AGTAAAAATG TTTCACTTGG GTGTACTCTC CTTACCATTG ATGAGAATGG 420 AACAGTATTC ACAAGATGAT TATCACAAA 114517 |||||||||| |||||||||| ||||||||| AACAGTATTC ACAAGATGAT TATCACAAA 449 hqPGS_C08HBa0197J17.1-_SGN-E281666+ (114965 114517) ******************************************************************************** EST sequence 81 +strand 239 n (File: SGN-E295509+) 1 GAACTTCCAT CAGCATCAAG GGGTGCTTAA ACGGGGACTG TGTGCAGCAC TGTCGTCCTC 61 TGCTTTGTGA TCCTGTAGTC CTCACATGAA TACATCTTCA ACAGTTCCCT TTTGTGTTAT 121 CCCTGTGCAT TAGATACAAG TATTTCTTGT CCTCCTGTAA TATCGTGTAA TCATAAACAG 181 AAGTTCTTTT GGTGATAAGA GACAAGTTAT AGTCCTATTA AGACAAAAAA AAATAAAAA Predicted gene structure (within gDNA segment 115449 to 113884): Exon 1 114849 114611 ( 239 n); cDNA 1 239 ( 239 n); score: 0.967 MATCH C08HBa0197J17.1- SGN-E295509+ 0.967 239 1.000 C PGS_C08HBa0197J17.1-_SGN-E295509+ (114849 114611) Alignment (genomic DNA sequence = upper lines): GAACTTCCAT CAGCATCAAG GGGTGCTTAA ACGGGGACTG TGTGCAGCAC TGTCGTCCTC 114790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTCCAT CAGCATCAAG GGGTGCTTAA ACGGGGACTG TGTGCAGCAC TGTCGTCCTC 60 TGCTTTGTGA TCCTGTAGTC CTCACATGAA TACATCTTCA ACAGTTCCCT TTTGTGTTAT 114730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTTGTGA TCCTGTAGTC CTCACATGAA TACATCTTCA ACAGTTCCCT TTTGTGTTAT 120 CCCTGTGCAT TAGATACAAG TATTTCTTGT CCTCCTGTAA TATCGTGTAA TCATAAACAG 114670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTGTGCAT TAGATACAAG TATTTCTTGT CCTCCTGTAA TATCGTGTAA TCATAAACAG 180 AAGTTCTTTT GGTGATAAGA GACAAGTTAT AGTCCTATTA AGACAAGATC ATGTGTCAA 114611 |||||||||| |||||||||| |||||||||| |||||||||| |||||| | | | || AAGTTCTTTT GGTGATAAGA GACAAGTTAT AGTCCTATTA AGACAAAAAA AAATAAAAA 239 hqPGS_C08HBa0197J17.1-_SGN-E295509+ (114849 114611) ******************************************************************************** EST sequence 85 +strand 549 n (File: SGN-E254420+) 1 CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 61 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 121 AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 181 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTG CAACTGTGAT 241 GAACATGCTG GGTAATGTTC TGATATCCAA GGATATGGTT AATTTGGAGG AAGAAATAGA 301 AGATGGCGAG ATAAAAAGTC TTGTAAGGGG AATAGTGGAA GTGCTCTCTG CTCCAAATAT 361 ATCTGATTTA TATCCTGTTT TAGGAGTTAC TCTTAGCTGG TTCAGACACC ACTACCTCAA 421 CAATTGAGTG GGCGATGGCA GAACTGATAA AGAACGTAGA GTCAATGAAG AAAGTTCAAG 481 AGGAGCTTGA GATAGAACTC AGTGAAAGTG ATTACCTAAA AGAATCTCAA TTGCTGCAGA 541 TGTCCTATA Predicted gene structure (within gDNA segment 117760 to 114877): Exon 1 116494 116110 ( 385 n); cDNA 1 383 ( 383 n); score: 0.874 Intron 1 116109 115662 ( 448 n); Pd: 0.687 (s: 0.84), Pa: 0.835 (s: 0.92) Exon 2 115661 115497 ( 165 n); cDNA 384 548 ( 165 n); score: 0.945 MATCH C08HBa0197J17.1- SGN-E254420+ 0.895 550 1.002 C PGS_C08HBa0197J17.1-_SGN-E254420+ (116494 116110,115661 115497) Alignment (genomic DNA sequence = upper lines): CCAAATGCTG TTCCAGCAAA AAGATCAGAT CTTGACAAGA TATCAATGGG CTGGACTTCT 116435 |||||||||| |||| |||| | | | |||| |||||||||| |||| |||| ||||| ||| CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 60 GAGTGTCACA ATGAATGGAG ATACTTGAGG ACTTTATGCA GAGCTGAGCT GTTCTCAGGC 116375 || ||| ||| || |||||| |||||||||| |||||||||| |||| ||||| ||| | || GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 120 AAAGTATTGG AGTCTCAAGC TTATTTGAGG GAG-AAAAAA GTGATGGAAT TGGTAGAATT 116316 |||||||||| |||||||||| || | ||||| ||| |||||| |||||||||| |||||||||| AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 180 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTAGTCT TTGCAACTGT 116256 |||||||||| |||||||||| |||||||||| |||||||||| | |||||| |||||||||| CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG C---TAGTCT TTGCAACTGT 237 TTTGAACATG TTGAGTAATG TTCTGATATC TAAAGATATG GTTAATTTGG AGAAAGAAAT 116196 |||||||| || |||||| |||||||||| || |||||| |||||||||| || ||||||| GATGAACATG CTGGGTAATG TTCTGATATC CAAGGATATG GTTAATTTGG AGGAAGAAAT 297 AGAAGATGGT GGGATTAGAA ATCTAATAAG GGGATTAGTG GAAGCAATCT CAGCTCCAAA 116136 ||||||||| | ||| | || ||| |||| |||| ||||| |||| ||| | |||||||| AGAAGATGGC GAGATAAAAA GTCTTGTAAG GGGAATAGTG GAAGTGCTCT CTGCTCCAAA 357 TGTATCTGAT TTTTATCCAG TATTAGGTAA ATTAGATCTT CAAGGTCTGC GAAAAAGAGC 116076 | |||||||| || ||||| | | |||| TATATCTGAT TTATATCCTG TTTTAG.... .......... .......... .......... 383 TAGATATGTA ATGACAGAGA TTCGTTCTAA CTGGGAACTG ATTCTTGAAG AAAGAAGGAA 116016 .......... .......... .......... .......... .......... .......... 383 AAATAAAGAG AGTGGTTCTT CTAGCCAACA TGATTTCTTG GAAGCTCTCC TTGATAATGG 115956 .......... .......... .......... .......... .......... .......... 383 TCTTACCAAT GATTGTATCC ACCAGTTATT TGTGGTTTGT TCGCTCTCCT TCTCTCGAAT 115896 .......... .......... .......... .......... .......... .......... 383 TTGCTTTCTG AGATTCAATT TCTGGTATAA ACTAAGTTAG TCTTTATAGC AGTATCTGAA 115836 .......... .......... .......... .......... .......... .......... 383 AAATGAAAAT CAAAGTAATC ATGTTAGTCT TTGTGCATAT ATGCTGTTAT ACAACTAATA 115776 .......... .......... .......... .......... .......... .......... 383 CCGAAGCATT TAGCCTCCTT AGTACTTCTC TTTTTAAAGT TCATATATTT AAGAAAGTTG 115716 .......... .......... .......... .......... .......... .......... 383 GAGTTCTTTA TTCAGATGTA GTGTATGACA AGTATTTCTT CTAACCATGT GAAGGAGTTA 115656 |||||| .......... .......... .......... .......... .......... ....GAGTTA 389 GTCTCTGCTG GTTCAGACAC CAGTACCTCA ACAATTGAGT GGGCGATGGC AGAACTGATA 115596 ||| |||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CTCTTAGCTG GTTCAGACAC CACTACCTCA ACAATTGAGT GGGCGATGGC AGAACTGATA 449 AAAAATGTAG AGACAATGAA GAAAGTTCAA GAGGAGCTCG AGATAGAACT CAGTGAAAGT 115536 || || |||| || ||||||| |||||||||| |||||||| | |||||||||| |||||||||| AAGAACGTAG AGTCAATGAA GAAAGTTCAA GAGGAGCTTG AGATAGAACT CAGTGAAAGT 509 GATTACCCAA AAGAATCTCA ATTGCTGCAG ATGTCCTAT 115497 ||||||| || |||||||||| |||||||||| ||||||||| GATTACCTAA AAGAATCTCA ATTGCTGCAG ATGTCCTAT 548 hqPGS_C08HBa0197J17.1-_SGN-E254420+ (116494 116110,115661 115497) ******************************************************************************** EST sequence 27 -strand 721 n (File: SGN-E375456-) 1 GGTTCAGACA CCACTACCTC AACAATTGAG TGGGCGATGG CAGAACTGAT AAAGAACGTA 61 GAGTCAATGA AGAAAGTTCA AGAGGAGCTT GAGATAGAAC TCAGTGAAAG TGATTACCTA 121 AAAGAATCTC AATTGCTGCA GATGTCCTAT ATCCAAGCCT GTGTAAAGGA AACACTTAGG 181 TTGCATCCTC CAGGACCATT GTTGCTTCCA CATCGTGCTA TCAAAACATG CCAAGTGATG 241 AGTTACACAA TTCCTAAAGA CGCGCAAATC TTTGTTAACG TCTGGGCTAT CACAAGGGAT 301 CCTTTGATAT GGGAAGAACC AGACATGTTT AGACCACAGA GGTTTTTGAA TTTTGATATG 361 GATTTCAAAG GGAATGACTT TGAGTACTTA CCCTTTGGTG CAGGACGAAG AATATGCCCA 421 GCCCTGCCAA TGGCTGCAAT AGAAATTCCG TTAGTCCTTG CTTTACTTGT TCGTTTCTTT 481 GATTGGGAAC TTCCTCATGG AAAATGTCCT GTTGAGCTAG ACATGACTGA ACAGTTTGGA 541 GTAACACTAC AAAAGAAAGA ACCGCTGCTT CTGATTCCCA AGGCCAGAAA ATAACCTTGC 601 ACTGTGTGGT GGTGGTAGAT ACTAGTATAT GTTTTCCTTC TGTGTTTGTG TAGTTGTTTA 661 TAGACAAGAC CCATGTGCAA TATATATATA ATATATTTCA TTTGGGTTTT AAAAAAAAAA 721 A Predicted gene structure (within gDNA segment 116382 to 113075): Exon 1 115646 115051 ( 596 n); cDNA 1 596 ( 596 n); score: 0.918 PPA cDNA 711 721 MATCH C08HBa0197J17.1- SGN-E375456- 0.918 596 0.827 C PGS_C08HBa0197J17.1-_SGN-E375456- (115646 115051) Alignment (genomic DNA sequence = upper lines): GGTTCAGACA CCAGTACCTC AACAATTGAG TGGGCGATGG CAGAACTGAT AAAAAATGTA 115587 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||| || ||| GGTTCAGACA CCACTACCTC AACAATTGAG TGGGCGATGG CAGAACTGAT AAAGAACGTA 60 GAGACAATGA AGAAAGTTCA AGAGGAGCTC GAGATAGAAC TCAGTGAAAG TGATTACCCA 115527 ||| |||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | GAGTCAATGA AGAAAGTTCA AGAGGAGCTT GAGATAGAAC TCAGTGAAAG TGATTACCTA 120 AAAGAATCTC AATTGCTGCA GATGTCCTAT GTCCAAGCCT GTGTGAAGGA AACACTTAGG 115467 |||||||||| |||||||||| |||||||||| ||||||||| |||| ||||| |||||||||| AAAGAATCTC AATTGCTGCA GATGTCCTAT ATCCAAGCCT GTGTAAAGGA AACACTTAGG 180 TTGCATCCTC CAGCACCATT TCTGCTTCCA CATCGTGCTA TCGAAACCTG CCAAGTGATG 115407 |||||||||| ||| |||||| |||||||| |||||||||| || |||| || |||||||||| TTGCATCCTC CAGGACCATT GTTGCTTCCA CATCGTGCTA TCAAAACATG CCAAGTGATG 240 AATCACACAA TTCCTAAAGA CGCTCAAATC TTGGTTAATG TCTGGGCTAT CATGAGGGAT 115347 | | |||||| |||||||||| ||| |||||| || ||||| | |||||||||| || |||||| AGTTACACAA TTCCTAAAGA CGCGCAAATC TTTGTTAACG TCTGGGCTAT CACAAGGGAT 300 CCTTTGATAT GGGAAGATCC AGAGATGTTT AGACCACAGA GGTTTCTGAG TTCCGATATG 115287 |||||||||| ||||||| || ||| |||||| |||||||||| ||||| ||| || |||||| CCTTTGATAT GGGAAGAACC AGACATGTTT AGACCACAGA GGTTTTTGAA TTTTGATATG 360 GACTTCAAAG GGAATGACTT TGAGTTCTTA CCCTTTGGTG CAGGAAGGAG AATATGCCCA 115227 || ||||||| |||||||||| ||||| |||| |||||||||| ||||| | || |||||||||| GATTTCAAAG GGAATGACTT TGAGTACTTA CCCTTTGGTG CAGGACGAAG AATATGCCCA 420 GGCCTGCCAA TGGCTGCAAT AATAATTCCC TTAGTCCTTG CTTCGCTTGT TCATTTCTTT 115167 | |||||||| |||||||||| | |||||| |||||||||| ||| ||||| || ||||||| GCCCTGCCAA TGGCTGCAAT AGAAATTCCG TTAGTCCTTG CTTTACTTGT TCGTTTCTTT 480 GATTGGGAGC TTCCTCACAG AGAACGTCCC ACTGAGCTAG ACATGACTGA AAAGTTTGGA 115107 |||||||| | ||||||| | | || |||| |||||||| |||||||||| | |||||||| GATTGGGAAC TTCCTCATGG AAAATGTCCT GTTGAGCTAG ACATGACTGA ACAGTTTGGA 540 GTAACACTGC AAAAGAAAGA ACCGCTGCTT CTGATTCCCA AGCCCAGAAA ATGACC 115051 |||||||| | |||||||||| |||||||||| |||||||||| || ||||||| || ||| GTAACACTAC AAAAGAAAGA ACCGCTGCTT CTGATTCCCA AGGCCAGAAA ATAACC 596 hqPGS_C08HBa0197J17.1-_SGN-E375456- (115646 115051) ******************************************************************************** EST sequence 57 -strand 322 n (File: SGN-E391657-) 1 TGGGCGAAGA ATATGCCCAG CCCTGCCAAT GGCTGCAATA GAAATTCCGT TAGTCCTTGC 61 TTTACTTGTT CGTTTCTTTG ATTGGGAACT TCCTCATGGA AAATGTCCTG TTGAGCTAGA 121 CATGACTGAA CAGTTTGGAG TAACACTACA AAAGAAAGAA CCGCTGCTTT TGATTCCCAA 181 GGCCAGAAAA TAACCTTGCA CTGTGTGGTG GTGGTAGATA CTAGTATATG TTTTCCTTCT 241 GTGTTTGTGT AGTTGTTTAT AGACAAGATC CATGTGCAAT ATATATATAA TATATTTCAT 301 TTGGGTTTAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 116854 to 112947): Exon 1 115238 115051 ( 188 n); cDNA 8 195 ( 188 n); score: 0.894 PPA cDNA 309 322 MATCH C08HBa0197J17.1- SGN-E391657- 0.894 188 0.584 C PGS_C08HBa0197J17.1-_SGN-E391657- (115238 115051) Alignment (genomic DNA sequence = upper lines): AGAATATGCC CAGGCCTGCC AATGGCTGCA ATAATAATTC CCTTAGTCCT TGCTTCGCTT 115179 |||||||||| ||| |||||| |||||||||| ||| ||||| | |||||||| ||||| ||| AGAATATGCC CAGCCCTGCC AATGGCTGCA ATAGAAATTC CGTTAGTCCT TGCTTTACTT 67 GTTCATTTCT TTGATTGGGA GCTTCCTCAC AGAGAACGTC CCACTGAGCT AGACATGACT 115119 |||| ||||| |||||||||| |||||||| || || ||| | |||||| |||||||||| GTTCGTTTCT TTGATTGGGA ACTTCCTCAT GGAAAATGTC CTGTTGAGCT AGACATGACT 127 GAAAAGTTTG GAGTAACACT GCAAAAGAAA GAACCGCTGC TTCTGATTCC CAAGCCCAGA 115059 ||| |||||| |||||||||| ||||||||| |||||||||| || ||||||| |||| ||||| GAACAGTTTG GAGTAACACT ACAAAAGAAA GAACCGCTGC TTTTGATTCC CAAGGCCAGA 187 AAATGACC 115051 |||| ||| AAATAACC 195 hqPGS_C08HBa0197J17.1-_SGN-E391657- (115238 115051) ******************************************************************************** EST sequence 97 +strand 249 n (File: SGN-E375457+) 1 CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 61 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 121 AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 181 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTCTTTT GCACTGTGAT 241 GAACATGCT Predicted gene structure (within gDNA segment 117760 to 115421): Exon 1 116494 116246 ( 249 n); cDNA 1 247 ( 247 n); score: 0.886 MATCH C08HBa0197J17.1- SGN-E375457+ 0.886 249 1.000 C PGS_C08HBa0197J17.1-_SGN-E375457+ (116494 116246) Alignment (genomic DNA sequence = upper lines): CCAAATGCTG TTCCAGCAAA AAGATCAGAT CTTGACAAGA TATCAATGGG CTGGACTTCT 116435 |||||||||| |||| |||| | | | |||| |||||||||| |||| |||| ||||| ||| CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 60 GAGTGTCACA ATGAATGGAG ATACTTGAGG ACTTTATGCA GAGCTGAGCT GTTCTCAGGC 116375 || ||| ||| || |||||| |||||||||| |||||||||| |||| ||||| ||| | || GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT TTTCGCTGGA 120 AAAGTATTGG AGTCTCAAGC TTATTTGAGG GAG-AAAAAA GTGATGGAAT TGGTAGAATT 116316 |||||||||| |||||||||| || | ||||| ||| |||||| |||||||||| |||||||||| AAAGTATTGG AGTCTCAAGC TTGTCTGAGG GAGAAAAAAA GTGATGGAAT TGGTAGAATT 180 CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGTAGTCT TTGCAACTGT 116256 |||||||||| |||||||||| |||||||||| |||||||||| ||||| | | |||| ||||| CTTGAGGTCA AAAGAAGGTC AAGTGGTGAA TATTGGAGAG CTAGT-CT-T TTGC-ACTGT 237 TTTGAACATG 116246 |||||||| GATGAACATG 247 hqPGS_C08HBa0197J17.1-_SGN-E375457+ (116494 116246) ******************************************************************************** EST sequence 134 +strand 476 n (File: SGN-E391658+) 1 CAATTACAAA TTATGTTCCT GCTTCCACTT TTCCTCTTGG CCTTGACTTT TTTCATCTTC 61 AATATTTTCA GATCATCAAA AACCACACAA CTTCCACCAG GATCAACACC ATGGCCAGTC 121 ATAGGTAGTA TTTTTCAAAT GGTAAAAATG CCTCACATAA CTCTGACAAA TTTAGCAAAA 181 ACTTATGGCC CTGTTATGTC CCTAAAGCTT GGAACTAAAT GGTTAGTTGT TGGATCATCA 241 TCTCTTGCTG CTATAGAAAT CCTCAAAACC CATGATAGAA TTCTGTCAGG GAGAGATGTT 301 CCAAATGCTG CTCCATCAAA AGGGTTAGAT CTTGACAAGA CATCACTGGG CTGGAGATCT 361 GAATGTAACA GTGGATGGAG ATACTTGAGG ACTTTATGCA GAGCCGAGCT GTGGGGGGGG 421 GGAGTATTGG AGTCTCAAGC TTGTCTGAAG GAGAAAAAAG TGATGGAATT GGTAGA Predicted gene structure (within gDNA segment 118141 to 115709): Exon 1 116792 116319 ( 474 n); cDNA 3 476 ( 474 n); score: 0.863 MATCH C08HBa0197J17.1- SGN-E391658+ 0.863 474 0.996 C PGS_C08HBa0197J17.1-_SGN-E391658+ (116792 116319) Alignment (genomic DNA sequence = upper lines): ATTTGAAATT CTTTTCCTGC TTCCATTTTT CCTTTTACCC TTAACTTTTT TCTACTTCAA 116733 ||| ||||| | ||||||| ||||| |||| ||| || || || ||||||| || |||||| ATTACAAATT ATGTTCCTGC TTCCACTTTT CCTCTTGGCC TTGACTTTTT TCATCTTCAA 62 AGTTCTCAGA TCATCCGAAA TCACACAACT TCCACCAGGA CCAACACCAT GGCCAGTCAT 116673 || ||||| ||||| ||| ||||||||| |||||||||| ||||||||| |||||||||| TATTTTCAGA TCATCAAAAA CCACACAACT TCCACCAGGA TCAACACCAT GGCCAGTCAT 122 AGGAAACATT TTTCATATGG GAAAAATGCC TCATATAACT CTGACAAATT TTGCAAAAAT 116613 ||| | ||| ||||| |||| ||||||||| ||| |||||| |||||||||| | ||||||| AGGTAGTATT TTTCAAATGG TAAAAATGCC TCACATAACT CTGACAAATT TAGCAAAAAC 182 ATATGGCCCT CTCATGTCCC TGAGGCTTGG AAGTCAATGT CTAGTTGTTG GATCATCAAC 116553 ||||||||| | ||||||| | | |||||| || | |||| ||||||||| |||||||| | TTATGGCCCT GTTATGTCCC TAAAGCTTGG AACTAAATGG TTAGTTGTTG GATCATCATC 242 TTCTACTGCT ATAGAAATCC TCAAAACCCA TGATAGAATT CTGTCAGGGA GACATGTTCC 116493 | | ||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TCTTGCTGCT ATAGAAATCC TCAAAACCCA TGATAGAATT CTGTCAGGGA GAGATGTTCC 302 AAATGCTGTT CCAGCAAAAA GATCAGATCT TGACAAGATA TCAATGGGCT GGACTTCTGA 116433 |||||||| | ||| ||||| | | |||||| |||||||| | ||| |||||| ||| ||||| AAATGCTGCT CCATCAAAAG GGTTAGATCT TGACAAGACA TCACTGGGCT GGAGATCTGA 362 GTGTCACAAT GAATGGAGAT ACTTGAGGAC TTTATGCAGA GCTGAGCTGT TCTCAGGCAA 116373 ||| ||| | | |||||||| |||||||||| |||||||||| || ||||||| || ATGTAACAGT GGATGGAGAT ACTTGAGGAC TTTATGCAGA GCCGAGCTGT GGGGGGGGGG 422 AGTATTGGAG TCTCAAGCTT ATTTGAGGGA GAAAAAAGTG ATGGAATTGG TAGA 116319 |||||||||| |||||||||| | ||| ||| |||||||||| |||||||||| |||| AGTATTGGAG TCTCAAGCTT GTCTGAAGGA GAAAAAAGTG ATGGAATTGG TAGA 476 hqPGS_C08HBa0197J17.1-_SGN-E391658+ (116792 116319) ******************************************************************************** EST sequence 126 +strand 469 n (File: SGN-E246615+) 1 AATTAGAAAT TATGTTCCTG CTTCCACTTT TCCTCTTGGC CTTGACTTTT TTCATCTTCA 61 ATATTTTCAG ATCATCAAAA ACCACACAAC TTCCACCAGG ATCAACACCA TGGCCAGTCA 121 TAGGTAGTAT TTTTCAAATG GTAAAAATGC CTCACATAAC TCTGACAAAT TTAGCAAAAA 181 CTTATGGCCC TGTTATGTCC CTAAAGCTTG GAACTAAATG GTTAGTTGTT GGATCATCAT 241 CTCTTGCTGC TATAGAAATC CTCACAACCC ATGATGGAAT TCTGTCAAGG AGAGATGTTC 301 CAAATGCTGC TCCATCAAAA GGGTTAGATC TTGACAAGAC ATCACTGGGC TGGAGATCTG 361 AATGTAACAG TGGATGGAGA TACTTGAGGA CTTTATGCAG AGCCGAGCTT TTCGCTGGAA 421 AAGTATTGGA GTCTCAAGCT TGTCTGAGGG AGAAAAAAGT GATGGAATT Predicted gene structure (within gDNA segment 118131 to 115715): Exon 1 116792 116325 ( 468 n); cDNA 2 469 ( 468 n); score: 0.868 MATCH C08HBa0197J17.1- SGN-E246615+ 0.868 468 0.998 C PGS_C08HBa0197J17.1-_SGN-E246615+ (116792 116325) Alignment (genomic DNA sequence = upper lines): ATTTGAAATT CTTTTCCTGC TTCCATTTTT CCTTTTACCC TTAACTTTTT TCTACTTCAA 116733 ||| |||||| | ||||||| ||||| |||| ||| || || || ||||||| || |||||| ATTAGAAATT ATGTTCCTGC TTCCACTTTT CCTCTTGGCC TTGACTTTTT TCATCTTCAA 61 AGTTCTCAGA TCATCCGAAA TCACACAACT TCCACCAGGA CCAACACCAT GGCCAGTCAT 116673 || ||||| ||||| ||| ||||||||| |||||||||| ||||||||| |||||||||| TATTTTCAGA TCATCAAAAA CCACACAACT TCCACCAGGA TCAACACCAT GGCCAGTCAT 121 AGGAAACATT TTTCATATGG GAAAAATGCC TCATATAACT CTGACAAATT TTGCAAAAAT 116613 ||| | ||| ||||| |||| ||||||||| ||| |||||| |||||||||| | ||||||| AGGTAGTATT TTTCAAATGG TAAAAATGCC TCACATAACT CTGACAAATT TAGCAAAAAC 181 ATATGGCCCT CTCATGTCCC TGAGGCTTGG AAGTCAATGT CTAGTTGTTG GATCATCAAC 116553 ||||||||| | ||||||| | | |||||| || | |||| ||||||||| |||||||| | TTATGGCCCT GTTATGTCCC TAAAGCTTGG AACTAAATGG TTAGTTGTTG GATCATCATC 241 TTCTACTGCT ATAGAAATCC TCAAAACCCA TGATAGAATT CTGTCAGGGA GACATGTTCC 116493 | | ||||| |||||||||| ||| |||||| |||| ||||| |||||| ||| || ||||||| TCTTGCTGCT ATAGAAATCC TCACAACCCA TGATGGAATT CTGTCAAGGA GAGATGTTCC 301 AAATGCTGTT CCAGCAAAAA GATCAGATCT TGACAAGATA TCAATGGGCT GGACTTCTGA 116433 |||||||| | ||| ||||| | | |||||| |||||||| | ||| |||||| ||| ||||| AAATGCTGCT CCATCAAAAG GGTTAGATCT TGACAAGACA TCACTGGGCT GGAGATCTGA 361 GTGTCACAAT GAATGGAGAT ACTTGAGGAC TTTATGCAGA GCTGAGCTGT TCTCAGGCAA 116373 ||| ||| | | |||||||| |||||||||| |||||||||| || ||||| | || | || || ATGTAACAGT GGATGGAGAT ACTTGAGGAC TTTATGCAGA GCCGAGCTTT TCGCTGGAAA 421 AGTATTGGAG TCTCAAGCTT ATTTGAGGGA GAAAAAAGTG ATGGAATT 116325 |||||||||| |||||||||| | ||||||| |||||||||| |||||||| AGTATTGGAG TCTCAAGCTT GTCTGAGGGA GAAAAAAGTG ATGGAATT 469 hqPGS_C08HBa0197J17.1-_SGN-E246615+ (116792 116325) ******************************************************************************** EST sequence 52 -strand 768 n (File: SGN-E369456-) 1 GGGAACTCAC ATGTGAGAGA TGTACGAGGT GTGGGGCTTA TTATTGGGAT CGACCTTGAT 61 GTACCAGCAT CTCCGCTGGT TGAAGCATGT CAACAATCTG GCCTTCTTGT ACTGACAGCA 121 GGGAAAGGAA ATGTTGTGAG GCTTGTACCA CCATTGACCA TCACCGAGCA AGAATTGGAC 181 CATGCAGCTG AGATCTTATT CAATTGTTTA CCTGTACTAG ATAAGACCGC CAATAACTAG 241 GCTCAAATAC TCAAAAAAGG GTTTGTTGCA TGTTCACTTC TATGGGGAGC TTCACAGGAT 301 CATATGCATT TGCTCATGGA GATCACTTTC ATGAGAAGTA ACACAATTTA TTTGTACGTA 361 CAGTTTAAGG TATCGTCTTC TATGAAGCTC TTGTCGTACC TGATTGTGTC ATTCTGAGGC 421 TGAAGATTCA TTTAGGAGCA AACTGGCTAT CAGAAATACA CAGTTGATCT TATTTAGATT 481 TTTCCTGTAG AAGTGAACAA TCAGTTTTTA AGTTTTAGAT GTATCGTCAA TTTGCACCAG 541 CTGAATCGAA ATAATGGATG CTGTCCTCTG TAATAACATT ATATCCATCT TTCTGAAATG 601 TAGAACTTAT CTATGTAATC TTGTATGCGT CATGAACAGA AGTCTTGTAC ATCAAGTGAA 661 TAGTGTTGCC TCGCTTTAGA TAGGGTAAGA ATATGATTTT CCATATTGAA CTTCAAAAGA 721 AAGGAGGAGA AGACAAAGCA AGTTATATTT AACTATTAAG ATAAAAAA Predicted gene structure (within gDNA segment 118343 to 116593): Exon 1 118014 117253 ( 762 n); cDNA 1 762 ( 762 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E369456- 1.000 762 0.992 C PGS_C08HBa0197J17.1-_SGN-E369456- (118014 117253) Alignment (genomic DNA sequence = upper lines): GGGAACTCAC ATGTGAGAGA TGTACGAGGT GTGGGGCTTA TTATTGGGAT CGACCTTGAT 117955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACTCAC ATGTGAGAGA TGTACGAGGT GTGGGGCTTA TTATTGGGAT CGACCTTGAT 60 GTACCAGCAT CTCCGCTGGT TGAAGCATGT CAACAATCTG GCCTTCTTGT ACTGACAGCA 117895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCAGCAT CTCCGCTGGT TGAAGCATGT CAACAATCTG GCCTTCTTGT ACTGACAGCA 120 GGGAAAGGAA ATGTTGTGAG GCTTGTACCA CCATTGACCA TCACCGAGCA AGAATTGGAC 117835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAAGGAA ATGTTGTGAG GCTTGTACCA CCATTGACCA TCACCGAGCA AGAATTGGAC 180 CATGCAGCTG AGATCTTATT CAATTGTTTA CCTGTACTAG ATAAGACCGC CAATAACTAG 117775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCAGCTG AGATCTTATT CAATTGTTTA CCTGTACTAG ATAAGACCGC CAATAACTAG 240 GCTCAAATAC TCAAAAAAGG GTTTGTTGCA TGTTCACTTC TATGGGGAGC TTCACAGGAT 117715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAAATAC TCAAAAAAGG GTTTGTTGCA TGTTCACTTC TATGGGGAGC TTCACAGGAT 300 CATATGCATT TGCTCATGGA GATCACTTTC ATGAGAAGTA ACACAATTTA TTTGTACGTA 117655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATGCATT TGCTCATGGA GATCACTTTC ATGAGAAGTA ACACAATTTA TTTGTACGTA 360 CAGTTTAAGG TATCGTCTTC TATGAAGCTC TTGTCGTACC TGATTGTGTC ATTCTGAGGC 117595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTAAGG TATCGTCTTC TATGAAGCTC TTGTCGTACC TGATTGTGTC ATTCTGAGGC 420 TGAAGATTCA TTTAGGAGCA AACTGGCTAT CAGAAATACA CAGTTGATCT TATTTAGATT 117535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGATTCA TTTAGGAGCA AACTGGCTAT CAGAAATACA CAGTTGATCT TATTTAGATT 480 TTTCCTGTAG AAGTGAACAA TCAGTTTTTA AGTTTTAGAT GTATCGTCAA TTTGCACCAG 117475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCTGTAG AAGTGAACAA TCAGTTTTTA AGTTTTAGAT GTATCGTCAA TTTGCACCAG 540 CTGAATCGAA ATAATGGATG CTGTCCTCTG TAATAACATT ATATCCATCT TTCTGAAATG 117415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAATCGAA ATAATGGATG CTGTCCTCTG TAATAACATT ATATCCATCT TTCTGAAATG 600 TAGAACTTAT CTATGTAATC TTGTATGCGT CATGAACAGA AGTCTTGTAC ATCAAGTGAA 117355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAACTTAT CTATGTAATC TTGTATGCGT CATGAACAGA AGTCTTGTAC ATCAAGTGAA 660 TAGTGTTGCC TCGCTTTAGA TAGGGTAAGA ATATGATTTT CCATATTGAA CTTCAAAAGA 117295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGTTGCC TCGCTTTAGA TAGGGTAAGA ATATGATTTT CCATATTGAA CTTCAAAAGA 720 AAGGAGGAGA AGACAAAGCA AGTTATATTT AACTATTAAG AT 117253 |||||||||| |||||||||| |||||||||| |||||||||| || AAGGAGGAGA AGACAAAGCA AGTTATATTT AACTATTAAG AT 762 hqPGS_C08HBa0197J17.1-_SGN-E369456- (118014 117253) ******************************************************************************** EST sequence 127 +strand 730 n (File: SGN-E369457+) 1 AGTTGCTGTG CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG 61 TCAAGATTTC AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT 121 ACGAGGTGTG GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA 181 AGCATGTCAA CAATCTGGCC TTCTTGTACT GACAGCAGGG AAAGGAAATG TTGTGAGGCT 241 TGTACCACCA TTGACCATCA CCGAGCAAGA ATTGGACCAT GCAGCTGAGA TCTTATTCAA 301 TTGTTTACCT GTACTAGATA AGACCGCCAA TAACTAGGCT CAAATACTCA AAAAAGGGTT 361 TGTTGCATGT TCACTTCTAT GGGGAGCTTC ACAGGATCAT ATGCATTTGC TCATGGAGAT 421 CACTTTCATG AGAAGTAACA CAATTTATTT GTACGTACAG TTTAAGGTAT CGTCTTCTAT 481 GAAGCTCTTG TCGTACCTGA TTGTGTCATT CTGAGGCTGA AGATTCATTT AGGAGCAAAC 541 TGGCTATCAG AAATACACAG TTGATCTTAT TTAGATTTTT CCTGTAGAAG TGAACAATCA 601 GTTTTTAAGT TTTAGATGTA TCGTCAATTT GCACCAGCTG AATCGAAATA ATGGATGCTG 661 TCCTCTGNTA TACATTATAT CCATCTTTCT GAAATGTAGA ACTTATCTAT GTAATCTTGT 721 ATGCGTCATG Predicted gene structure (within gDNA segment 118343 to 116771): Exon 1 118111 117381 ( 731 n); cDNA 1 730 ( 730 n); score: 0.996 MATCH C08HBa0197J17.1- SGN-E369457+ 0.996 731 1.001 C PGS_C08HBa0197J17.1-_SGN-E369457+ (118111 117381) Alignment (genomic DNA sequence = upper lines): AGTTGCTGTG CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG 118052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGCTGTG CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG 60 TCAAGATTTC AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT 117992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGATTTC AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT 120 ACGAGGTGTG GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA 117932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGGTGTG GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA 180 AGCATGTCAA CAATCTGGCC TTCTTGTACT GACAGCAGGG AAAGGAAATG TTGTGAGGCT 117872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATGTCAA CAATCTGGCC TTCTTGTACT GACAGCAGGG AAAGGAAATG TTGTGAGGCT 240 TGTACCACCA TTGACCATCA CCGAGCAAGA ATTGGACCAT GCAGCTGAGA TCTTATTCAA 117812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACCACCA TTGACCATCA CCGAGCAAGA ATTGGACCAT GCAGCTGAGA TCTTATTCAA 300 TTGTTTACCT GTACTAGATA AGACCGCCAA TAACTAGGCT CAAATACTCA AAAAAGGGTT 117752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTACCT GTACTAGATA AGACCGCCAA TAACTAGGCT CAAATACTCA AAAAAGGGTT 360 TGTTGCATGT TCACTTCTAT GGGGAGCTTC ACAGGATCAT ATGCATTTGC TCATGGAGAT 117692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGCATGT TCACTTCTAT GGGGAGCTTC ACAGGATCAT ATGCATTTGC TCATGGAGAT 420 CACTTTCATG AGAAGTAACA CAATTTATTT GTACGTACAG TTTAAGGTAT CGTCTTCTAT 117632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTCATG AGAAGTAACA CAATTTATTT GTACGTACAG TTTAAGGTAT CGTCTTCTAT 480 GAAGCTCTTG TCGTACCTGA TTGTGTCATT CTGAGGCTGA AGATTCATTT AGGAGCAAAC 117572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTCTTG TCGTACCTGA TTGTGTCATT CTGAGGCTGA AGATTCATTT AGGAGCAAAC 540 TGGCTATCAG AAATACACAG TTGATCTTAT TTAGATTTTT CCTGTAGAAG TGAACAATCA 117512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTATCAG AAATACACAG TTGATCTTAT TTAGATTTTT CCTGTAGAAG TGAACAATCA 600 GTTTTTAAGT TTTAGATGTA TCGTCAATTT GCACCAGCTG AATCGAAATA ATGGATGCTG 117452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTAAGT TTTAGATGTA TCGTCAATTT GCACCAGCTG AATCGAAATA ATGGATGCTG 660 TCCTCTGTAA TAACATTATA TCCATCTTTC TGAAATGTAG AACTTATCTA TGTAATCTTG 117392 ||||||| | | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCTGNTA T-ACATTATA TCCATCTTTC TGAAATGTAG AACTTATCTA TGTAATCTTG 719 TATGCGTCAT G 117381 |||||||||| | TATGCGTCAT G 730 hqPGS_C08HBa0197J17.1-_SGN-E369457+ (118111 117381) ******************************************************************************** EST sequence 44 -strand 375 n (File: SGN-E278403-) 1 CAAATACTCA AAAAAAGGGT TTGTTGCATG TTCACTTCTA TTGGGGAGCT TCACAGGNAT 61 CATATGCATT TGCTCATGGA GATCACNTTT CATGAGAAGT AACACAATTT ATTTGTACGT 121 ACAGTTTAAG GTATCGTCTT CTATGAAGCT CTTGTCGTAC CTGATTGTGT CATTCTGAGG 181 CTGAAGATTC ATTTAGGAGC AAACTGGCTA TCAGAAATAC ACAGTTGATC TTATTTAGAT 241 TTTTCCTGTA GAAGTGAACA ATCAGTTTTT AAGTTTTAGA TGTATCGTCA ATTTGCACCA 301 GCTGAATCGA AATAATGGAT GCTGTCCTCT GTAATAACAT TATATCCATC TTTCTGAAAA 361 AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 118343 to 116657): Exon 1 117771 117418 ( 354 n); cDNA 1 358 ( 358 n); score: 0.972 PPA cDNA 359 375 MATCH C08HBa0197J17.1- SGN-E278403- 0.972 354 0.944 C PGS_C08HBa0197J17.1-_SGN-E278403- (117771 117418) Alignment (genomic DNA sequence = upper lines): CAAATACTC- AAAAAAGGGT TTGTTGCATG TTCACTTCTA -TGGGGAGCT TCACAGG-AT 117715 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||| || CAAATACTCA AAAAAAGGGT TTGTTGCATG TTCACTTCTA TTGGGGAGCT TCACAGGNAT 60 CATATGCATT TGCTCATGGA GATCAC-TTT CATGAGAAGT AACACAATTT ATTTGTACGT 117656 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CATATGCATT TGCTCATGGA GATCACNTTT CATGAGAAGT AACACAATTT ATTTGTACGT 120 ACAGTTTAAG GTATCGTCTT CTATGAAGCT CTTGTCGTAC CTGATTGTGT CATTCTGAGG 117596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGTTTAAG GTATCGTCTT CTATGAAGCT CTTGTCGTAC CTGATTGTGT CATTCTGAGG 180 CTGAAGATTC ATTTAGGAGC AAACTGGCTA TCAGAAATAC ACAGTTGATC TTATTTAGAT 117536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGATTC ATTTAGGAGC AAACTGGCTA TCAGAAATAC ACAGTTGATC TTATTTAGAT 240 TTTTCCTGTA GAAGTGAACA ATCAGTTTTT AAGTTTTAGA TGTATCGTCA ATTTGCACCA 117476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCTGTA GAAGTGAACA ATCAGTTTTT AAGTTTTAGA TGTATCGTCA ATTTGCACCA 300 GCTGAATCGA AATAATGGAT GCTGTCCTCT GTAATAACAT TATATCCATC TTTCTGAA 117418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GCTGAATCGA AATAATGGAT GCTGTCCTCT GTAATAACAT TATATCCATC TTTCTGAA 358 hqPGS_C08HBa0197J17.1-_SGN-E278403- (117771 117418) ******************************************************************************** EST sequence 137 +strand 433 n (File: SGN-E241031+) 1 AGTTGCTGTG CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG 61 TCAAGATTTC AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT 121 ACGAGGTGTG GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA 181 AGCATGTCAA CAATCTGGCC TTCTTGTACT GACAGCAGGG AAAGGAAATG TTGTGAGGCT 241 TGTACCACCA TTGACCATCA CCGAGCAAGA ATTGGACCAT GCAGCTGAGA TCTTATTCAA 301 TTGTTTACCT GTACTAGATA AGACCGCCAA TAACTAGGCT CAAATACTCA AAAAAGGGTT 361 TGTTGCATGT TCACTTCTAT GGGGAGCTTC ACAGGATCAT ATGCATTTGC TCATGGAGAT 421 CACTTTCATG AGA Predicted gene structure (within gDNA segment 118343 to 117069): Exon 1 118111 117679 ( 433 n); cDNA 1 433 ( 433 n); score: 1.000 MATCH C08HBa0197J17.1- SGN-E241031+ 1.000 433 1.000 C PGS_C08HBa0197J17.1-_SGN-E241031+ (118111 117679) Alignment (genomic DNA sequence = upper lines): AGTTGCTGTG CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG 118052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGCTGTG CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG 60 TCAAGATTTC AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT 117992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGATTTC AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT 120 ACGAGGTGTG GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA 117932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGGTGTG GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA 180 AGCATGTCAA CAATCTGGCC TTCTTGTACT GACAGCAGGG AAAGGAAATG TTGTGAGGCT 117872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATGTCAA CAATCTGGCC TTCTTGTACT GACAGCAGGG AAAGGAAATG TTGTGAGGCT 240 TGTACCACCA TTGACCATCA CCGAGCAAGA ATTGGACCAT GCAGCTGAGA TCTTATTCAA 117812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACCACCA TTGACCATCA CCGAGCAAGA ATTGGACCAT GCAGCTGAGA TCTTATTCAA 300 TTGTTTACCT GTACTAGATA AGACCGCCAA TAACTAGGCT CAAATACTCA AAAAAGGGTT 117752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTACCT GTACTAGATA AGACCGCCAA TAACTAGGCT CAAATACTCA AAAAAGGGTT 360 TGTTGCATGT TCACTTCTAT GGGGAGCTTC ACAGGATCAT ATGCATTTGC TCATGGAGAT 117692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGCATGT TCACTTCTAT GGGGAGCTTC ACAGGATCAT ATGCATTTGC TCATGGAGAT 420 CACTTTCATG AGA 117679 |||||||||| ||| CACTTTCATG AGA 433 hqPGS_C08HBa0197J17.1-_SGN-E241031+ (118111 117679) ******************************************************************************** EST sequence 89 +strand 484 n (File: SGN-E263867+) 1 TTTTACAAGC ACTGAGGACT GCCTGTGATA GTGCAGGTTC TCTCCTTGTC TTTGATGAGG 61 TTCAATGCGG CCTAGGAAGA ACTGGTCATC TTTGGGCGCA TGAAGCTTAT GGCATATACC 121 CAGATATAAT GACTCTTGCA AAGCCTCTTG CAGGAGGTCT ACCTATTGGG GCAGTGTTGG 181 TAACTGAAAG AGTTGCTGCT GCCATCAATT ATGGGGATCA TGGTAGCACC TTTGCTGGTG 241 GTCCCCTTGT TTGCAACGCT GCAGTTGCTG TGCTGGACAA GATCTCCGGA CCAGGTTTCC 301 TTGCCAGTGT CGCAAAGAAA GGTCAAGATT TCAAGGAATT GCTGGTTAAG AAATTAGGAG 361 GGAACTCACA TGTGAGAGAT GTACGAGGTG TGGGGCTTAT TATTGGGATC GACCTTGATG 421 TACCAGCATC TCCGCTGGTT GAANCATGTC AACAATCTGG CCTTCTTGTA CTGACAGCAG 481 GGAA Predicted gene structure (within gDNA segment 118343 to 117280): Exon 1 118341 117890 ( 452 n); cDNA 33 484 ( 452 n); score: 0.973 MATCH C08HBa0197J17.1- SGN-E263867+ 0.973 452 0.934 C PGS_C08HBa0197J17.1-_SGN-E263867+ (118341 117890) Alignment (genomic DNA sequence = upper lines): GCTTTTACTT GTATTTTCTT TTATTAGGTT CAATGCGGCC TAGGAAGAAC TGGTCATCTT 118282 || | || || |||| | || ||||| |||||||||| |||||||||| |||||||||| GCAGGTTCTC TCCTTGTCTT TGATGAGGTT CAATGCGGCC TAGGAAGAAC TGGTCATCTT 92 TGGGCGCATG AAGCTTATGG CATATACCCA GATATAATGA CTCTTGCAAA GCCTCTTGCA 118222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCGCATG AAGCTTATGG CATATACCCA GATATAATGA CTCTTGCAAA GCCTCTTGCA 152 GGAGGTCTAC CTATTGGGGC AGTGTTGGTA ACTGAAAGAG TTGCTGCTGC CATCAATTAT 118162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGTCTAC CTATTGGGGC AGTGTTGGTA ACTGAAAGAG TTGCTGCTGC CATCAATTAT 212 GGGGATCATG GTAGCACCTT TGCTGGTGGT CCCCTTGTTT GCAACGCTGC AGTTGCTGTG 118102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGATCATG GTAGCACCTT TGCTGGTGGT CCCCTTGTTT GCAACGCTGC AGTTGCTGTG 272 CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG TCAAGATTTC 118042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG TCAAGATTTC 332 AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT ACGAGGTGTG 117982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT ACGAGGTGTG 392 GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA AGCATGTCAA 117922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA ANCATGTCAA 452 CAATCTGGCC TTCTTGTACT GACAGCAGGG AA 117890 |||||||||| |||||||||| |||||||||| || CAATCTGGCC TTCTTGTACT GACAGCAGGG AA 484 hqPGS_C08HBa0197J17.1-_SGN-E263867+ (118341 117890) ******************************************************************************** EST sequence 102 +strand 622 n (File: SGN-E265858+) 1 TTGAACCTAT AATGCCAGGA GTTACTTTCC TGGAGTATGG TAATGTTCAA GCAGCAAAAG 61 AATTAATTCA GAGTGGTAAA ATAGCTGCTG TATTTGTCGA ACCAATCCAA GGTGAAGGTG 121 GTATATATAG TGCAACACAA GAATTTTTAC AAGCACTGAG GACTGCCTGT GATAGTGCAG 181 GTTCTCTCCT TGTCTTTGAT GAGGTTCAAT GCGGCCTAGG AAGAACTGGT CATCTTTGGG 241 CGCATGAAGC TTATGGCATA TACCCAGATA TAATGACTCT TGCAAAGCCT CTTGCAGGAG 301 GTCTACCTAT TGGGGCAGTG TTGGTAACTG AAAGAGTTGC TGCTGCCATC AATTATGGGG 361 ATCATGGTAG CACCTTTGCT GGTGGTCCCC TTGTTTGCAA CGCTGCAGTT GCTGTGCTGG 421 ACAAGATCTC CGGACCAGGT TTCCTTGCCA GTGTCGCAAA GAAAGGTCAA GATTTCAAGG 481 AATTGCTGGT TAAGAAATTA GGAGGGAACT CACATGTGAG AGATGTACGA GGTGTGGGGC 541 TTATTATTGG GATCGACCTT GATGTACCAG CATCTCCGCT GGTTGAAGCA TGTCAACAAT 601 CTGGCCTTCT TGTACTGACA GC Predicted gene structure (within gDNA segment 118343 to 117286): Exon 1 118341 117896 ( 446 n); cDNA 177 622 ( 446 n); score: 0.975 MATCH C08HBa0197J17.1- SGN-E265858+ 0.975 446 0.717 C PGS_C08HBa0197J17.1-_SGN-E265858+ (118341 117896) Alignment (genomic DNA sequence = upper lines): GCTTTTACTT GTATTTTCTT TTATTAGGTT CAATGCGGCC TAGGAAGAAC TGGTCATCTT 118282 || | || || |||| | || ||||| |||||||||| |||||||||| |||||||||| GCAGGTTCTC TCCTTGTCTT TGATGAGGTT CAATGCGGCC TAGGAAGAAC TGGTCATCTT 236 TGGGCGCATG AAGCTTATGG CATATACCCA GATATAATGA CTCTTGCAAA GCCTCTTGCA 118222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCGCATG AAGCTTATGG CATATACCCA GATATAATGA CTCTTGCAAA GCCTCTTGCA 296 GGAGGTCTAC CTATTGGGGC AGTGTTGGTA ACTGAAAGAG TTGCTGCTGC CATCAATTAT 118162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGTCTAC CTATTGGGGC AGTGTTGGTA ACTGAAAGAG TTGCTGCTGC CATCAATTAT 356 GGGGATCATG GTAGCACCTT TGCTGGTGGT CCCCTTGTTT GCAACGCTGC AGTTGCTGTG 118102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGATCATG GTAGCACCTT TGCTGGTGGT CCCCTTGTTT GCAACGCTGC AGTTGCTGTG 416 CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG TCAAGATTTC 118042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGACAAGA TCTCCGGACC AGGTTTCCTT GCCAGTGTCG CAAAGAAAGG TCAAGATTTC 476 AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT ACGAGGTGTG 117982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAATTGC TGGTTAAGAA ATTAGGAGGG AACTCACATG TGAGAGATGT ACGAGGTGTG 536 GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA AGCATGTCAA 117922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTTATTA TTGGGATCGA CCTTGATGTA CCAGCATCTC CGCTGGTTGA AGCATGTCAA 596 CAATCTGGCC TTCTTGTACT GACAGC 117896 |||||||||| |||||||||| |||||| CAATCTGGCC TTCTTGTACT GACAGC 622 hqPGS_C08HBa0197J17.1-_SGN-E265858+ (118341 117896) ******************************************************************************** EST sequence 116 +strand 517 n (File: SGN-E266293+) 1 GCAAAACGCC TGGTTGCTAA TTCTTTTGCA GACCGGGTTT TTTTGTCGAA TTCTGGAACA 61 GAAGCAAATG AAGCTGCAAT TAAATTTGCA AGGAAGTTTC AGAGATTTTC TCATCCCGAT 121 GAGAAGCAGC CTCCTGTGGA GTTCATTGCC TTCTCCAATT GCTTCCATGG AAGGACCATG 181 GGTGCCGTTG CTTTGACAAG CAAAGAATAT TACAGGTCAC CTTTTGAACC TATAATGCCA 241 GGAGTTACTT TCCTGGAGTA TGGTAATGTT CAAGCAGCAA AAGAATTAAT TCAGAGTGGT 301 AAAATAGCTG CTGTATTTGT CGAACCAATC CAAGGTGAAG GTGGTATATA TAGTGCAACA 361 CAAGAATTTT TACAAGCACT GAGGACTGCC TGTGATAGTG CAGGTTCTCT CCTTGTCTTT 421 GATGAGGTTC AATGCGGCCT AGGAAGAACT GGTCATCTTT GGGCGCATGA AGCTTATGGC 481 ATATACCCAG ATATAATGAC TCTTGCAAAG CCTCTTG Predicted gene structure (within gDNA segment 118343 to 117614): Exon 1 118341 118224 ( 118 n); cDNA 400 517 ( 118 n); score: 0.907 MATCH C08HBa0197J17.1- SGN-E266293+ 0.907 118 0.228 C PGS_C08HBa0197J17.1-_SGN-E266293+ (118341 118224) Alignment (genomic DNA sequence = upper lines): GCTTTTACTT GTATTTTCTT TTATTAGGTT CAATGCGGCC TAGGAAGAAC TGGTCATCTT 118282 || | || || |||| | || ||||| |||||||||| |||||||||| |||||||||| GCAGGTTCTC TCCTTGTCTT TGATGAGGTT CAATGCGGCC TAGGAAGAAC TGGTCATCTT 459 TGGGCGCATG AAGCTTATGG CATATACCCA GATATAATGA CTCTTGCAAA GCCTCTTG 118224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGGGCGCATG AAGCTTATGG CATATACCCA GATATAATGA CTCTTGCAAA GCCTCTTG 517 hqPGS_C08HBa0197J17.1-_SGN-E266293+ (118341 118224) Total number of EST alignments reported: 143 ________________________________________________________________________________ Predicted gene locations (18) in segment 1 to 118343: PGL 1 (+ strand): 5624 5927 AGS-1 (5624 5927) SCR (e 0.747) Exon 1 5624 5927 ( 304 n); score: 0.747 PGS (5624 5927) SGN-E228234- PGS (5624 5927) SGN-E240450- PGS (5624 5927) SGN-E241852- 3-phase translation of AGS-1 (+strand): . . . . . . 5624 TAAGTGTCTGTTATGATCGATTTGGTTCGATTTTAAAGTTTATCAGTTTGGCTTATTGGT - V S V M I D L V R F - S L S V W L I G K C L L - S I W F D F K V Y Q F G L L V S V C Y D R F G S I L K F I S L A Y W . . . . . . 5684 TATCGATTTGTAGTGATGTTAAATCGTTATATAACCATTGAGATATTGACTTATTAATTA Y R F V V M L N R Y I T I E I L T Y - L I D L - - C - I V I - P L R Y - L I N Y L S I C S D V K S L Y N H - D I D L L I . . . . . . 5744 TTGGTTATTTATTTGTCGATTTTTTATCGTTATCGATTTAACCGCTAAGATTTAATCAAA L V I Y L S I F Y R Y R F N R - D L I K W L F I C R F F I V I D L T A K I - S K I G Y L F V D F L S L S I - P L R F N Q . . . . . . 5804 AATAAAATAAAAATCACTTAGATACAAGGTGACAAACCAAATGAACCATGCAAACGAGTT N K I K I T - I Q G D K P N E P C K R V I K - K S L R Y K V T N Q M N H A N E F K - N K N H L D T R - Q T K - T M Q T S . . . . . . 5864 CACAAGTTACATCTTGCTCAAAAGCAAACATTTTTACAGTGTAGAATTACCAAGTGCTTG H K L H L A Q K Q T F L Q C R I T K C L T S Y I L L K S K H F Y S V E L P S A - S Q V T S C S K A N I F T V - N Y Q V L . 5924 AGAC R D E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 5927 GTCTCAAGCACTTGGTAATTCTACACTGTAAAAATGTTTGCTTTTGAGCAAGATGTAACT V S S T W - F Y T V K M F A F E Q D V T S Q A L G N S T L - K C L L L S K M - L L K H L V I L H C K N V C F - A R C N . . . . . . 5867 TGTGAACTCGTTTGCATGGTTCATTTGGTTTGTCACCTTGTATCTAAGTGATTTTTATTT C E L V C M V H L V C H L V S K - F L F V N S F A W F I W F V T L Y L S D F Y F L - T R L H G S F G L S P C I - V I F I . . . . . . 5807 TATTTTTGATTAAATCTTAGCGGTTAAATCGATAACGATAAAAAATCGACAAATAAATAA Y F - L N L S G - I D N D K K S T N K - I F D - I L A V K S I T I K N R Q I N N L F L I K S - R L N R - R - K I D K - I . . . . . . 5747 CCAATAATTAATAAGTCAATATCTCAATGGTTATATAACGATTTAACATCACTACAAATC P I I N K S I S Q W L Y N D L T S L Q I Q - L I S Q Y L N G Y I T I - H H Y K S T N N - - V N I S M V I - R F N I T T N . . . . . . 5687 GATAACCAATAAGCCAAACTGATAAACTTTAAAATCGAACCAAATCGATCATAACAGACA D N Q - A K L I N F K I E P N R S - Q T I T N K P N - - T L K S N Q I D H N R H R - P I S Q T D K L - N R T K S I I T D . 5627 CTTA L L T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 6820 10458 AGS-1 (6820 6967,8895 9001,9101 9202,9432 9627,10082 10210,10302 10458) SCR (e 1.000 d 0.996 a 0.971,e 1.000 d 0.943 a 0.999,e 1.000 d 0.963 a 0.995,e 0.993 d 0.997 a 0.000,e 1.000 d 0.960 a 0.949,e 0.971) Exon 1 6820 6967 ( 148 n); score: 1.000 Intron 1 6968 8894 (1927 n); Pd: 0.996 Pa: 0.971 Exon 2 8895 9001 ( 107 n); score: 1.000 Intron 2 9002 9100 ( 99 n); Pd: 0.943 Pa: 0.999 Exon 3 9101 9202 ( 102 n); score: 1.000 Intron 3 9203 9431 ( 229 n); Pd: 0.963 Pa: 0.995 Exon 4 9432 9627 ( 196 n); score: 0.993 Intron 4 9628 10081 ( 454 n); Pd: 0.997 Pa: 0.000 Exon 5 10082 10210 ( 129 n); score: 1.000 Intron 5 10211 10301 ( 91 n); Pd: 0.960 Pa: 0.949 Exon 6 10302 10458 ( 157 n); score: 0.971 PGS (6820 6967,8895 9001,9101 9202,9432 9576) SGN-E313722+ PGS (9115 9202,9432 9627,10082 10210,10302 10458) SGN-E552597+ 3-phase translation of AGS-1 (+strand): . . . . . . 6820 GTCTTCTTCGACATCATCTGGACCAGAAATCCCTTGGGTTGAGAAGTTTCGACCCACCAA V F F D I I W T R N P L G - E V S T H Q S S S T S S G P E I P W V E K F R P T K L L R H H L D Q K S L G L R S F D P P . . . . . . 6880 AGTATCCGACATCGTCGGCAATGAAGATGCAGTTGCCAGGCTTCAAGTTATTGCTCGTGA S I R H R R Q - R C S C Q A S S Y C S - V S D I V G N E D A V A R L Q V I A R D K Y P T S S A M K M Q L P G F K L L L V . . . : . . . 6940 TGGAAACATGCCCAATCTTATTTTAGCC : GGTCCTCCGGGTACTGGCAAAACCACTAGTAT W K H A Q S Y F S : R S S G Y W Q N H - Y G N M P N L I L A : G P P G T G K T T S I M E T C P I L F - P : V L R V L A K P L V . . . . . . 8927 ATTGGCTCTTGCTCATGAGCTTTTGGGACCAAACTATAAGGAGGCTGTGTTGGAGCTAAA I G S C S - A F G T K L - G G C V G A K L A L A H E L L G P N Y K E A V L E L N Y W L L L M S F W D Q T I R R L C W S - . . : . . . . 8987 TGCATCAGATGATAG : GGGCATCGATGTTGTTAGAAACAAAATCAAGATGTTTGCTCAGAA C I R - - : G H R C C - K Q N Q D V C S E A S D D R : G I D V V R N K I K M F A Q K M H Q M I : G A S M L L E T K S R C L L R . . . . . . : 9146 GAAAGTTACTCTACCCCCTGGTCGGCACAAAATAATTATTTTGGACGAGGCTGACAG : CAT E S Y S T P W S A Q N N Y F G R G - Q : H K V T L P P G R H K I I I L D E A D S : M R K L L Y P L V G T K - L F W T R L T : A . . . . . . 9435 GACATCTGGAGCTCAGCAAGCACTGAGGAGGACAATGGAAATATATTCGAACTCCACTCG D I W S S A S T E E D N G N I F E L H S T S G A Q Q A L R R T M E I Y S N S T R - H L E L S K H - G G Q W K Y I R T P L . . . . . . 9495 CTTTGCTCTTGCCTGCAATACTTCTTCGAAGATTATCGAGCCTATTCAAAGTAGATGTGC L C S C L Q Y F F E D Y R A Y S K - M C F A L A C N T S S K I I E P I Q S R C A A L L L P A I L L R R L S S L F K V D V . . . . . . 9555 CCTGGTTCGATTTGCAAGATTATCTGACCAAGAGATCCTTGGACGCCTTATGGCTGTAGT P G S I C K I I - P R D P W T P Y G C S L V R F A R L S D Q E I L G R L M A V V P W F D L Q D Y L T K R S L D A L W L - . . : . . . . 9615 TGCAGCAGAAAAG : GTTGCTTATGTACCTGAAGGCCTTGAAGCTATTATATTTACTGCTGA C S R K : G C L C T - R P - S Y Y I Y C - A A E K : V A Y V P E G L E A I I F T A D L Q Q K R : L L M Y L K A L K L L Y L L L . . . . . . 10129 TGGAGACATGAGACAGGGCTTAAATAACTTACAAGCAACACATAGTGGATTTGGTTTTGT W R H E T G L K - L T S N T - W I W F C G D M R Q G L N N L Q A T H S G F G F V M E T - D R A - I T Y K Q H I V D L V L . . . : . . . 10189 CAACCAAGAGAATGTTTTCAAG : GTTTGTGACCAACCTCATCCATTGCATGTGAAGAATAT Q P R E C F Q : G L - P T S S I A C E E Y N Q E N V F K : V C D Q P H P L H V K N M S T K R M F S R : F V T N L I H C M - R I . . . . . . 10340 GGTGCGGAATGTCCTCGAAGGAAAATTTGATGATGCATGTGCTGGTCTAAAGGCACTGTA G A E C P R R K I - - C M C W S K G T V V R N V L E G K F D D A C A G L K A L Y W C G M S S K E N L M M H V L V - R H C . . . . . . 10400 TGACCTGGGATATTCCCCCACTGACATCATCACAACCCTCTTCCGAATTATAAAGAACT - P G I F P H - H H H N P L P N Y K E D L G Y S P T D I I T T L F R I I K N M T W D I P P L T S S Q P S S E L - R T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-2_AGS-1_PPS_1 (6821 6967,8895 9001,9101 9202,9432 9627,10082 10210,10302 10457) (frame '2'; 837 bp, 279 residues) 1 SSSTSSGPEI PWVEKFRPTK VSDIVGNEDA VARLQVIARD GNMPNLILAG PPGTGKTTSI 61 LALAHELLGP NYKEAVLELN ASDDRGIDVV RNKIKMFAQK KVTLPPGRHK IIILDEADSM 121 TSGAQQALRR TMEIYSNSTR FALACNTSSK IIEPIQSRCA LVRFARLSDQ EILGRLMAVV 181 AAEKVAYVPE GLEAIIFTAD GDMRQGLNNL QATHSGFGFV NQENVFKVCD QPHPLHVKNM 241 VRNVLEGKFD DACAGLKALY DLGYSPTDII TTLFRIIKN PGL 3 (+ strand): 14497 18957 AGS-1 (14497 15126,17234 17397,17724 17887,18012 18262,18639 18957) SCR (e 1.000 d 0.994 a 1.000,e 1.000 d 0.964 a 0.997,e 1.000 d 0.987 a 0.992,e 1.000 d 0.866 a 0.990,e 0.997) Exon 1 14497 15126 ( 630 n); score: 1.000 Intron 1 15127 17233 (2107 n); Pd: 0.994 Pa: 1.000 Exon 2 17234 17397 ( 164 n); score: 1.000 Intron 2 17398 17723 ( 326 n); Pd: 0.964 Pa: 0.997 Exon 3 17724 17887 ( 164 n); score: 1.000 Intron 3 17888 18011 ( 124 n); Pd: 0.987 Pa: 0.992 Exon 4 18012 18262 ( 251 n); score: 1.000 Intron 4 18263 18638 ( 376 n); Pd: 0.866 Pa: 0.990 Exon 5 18639 18957 ( 319 n); score: 0.997 PGS (14497 15028) SGN-E245703+ PGS (14531 15126,17234 17397,17724 17774) SGN-E555164+ PGS (14551 15126) SGN-E271146+ PGS (14574 15126,17234 17321) SGN-E301818+ PGS (14589 15126) SGN-E268360+ PGS (14613 14992) SGN-E307837+ PGS (14615 15126,17234 17397,17724 17756) SGN-E545811+ PGS (14617 15126) SGN-E273108+ PGS (14623 15126,17234 17275) SGN-E301196+ PGS (14631 15126,17234 17355) SGN-E250525+ PGS (14634 15126,17234 17397,17724 17815) SGN-E263215+ PGS (14634 15126,17234 17351) SGN-E261982+ PGS (14634 15126,17234 17321) SGN-E255513+ PGS (14634 15126,17234 17283) SGN-E255383+ PGS (14720 15059) SGN-E200787+ PGS (15020 15126,17234 17397,17724 17887,18012 18175) SGN-E368816+ PGS (15020 15126,17234 17397,17724 17850) SGN-E259523+ PGS (17255 17397,17724 17887,18012 18262,18639 18910) SGN-E549268- PGS (17762 17887,18012 18262,18639 18840) SGN-E296903+ PGS (17781 17887,18012 18262,18639 18957) SGN-E368815- PGS (18021 18262,18639 18942) SGN-E299685- 3-phase translation of AGS-1 (+strand): . . . . . . 14497 TTTAATCCACATAAGTTTCTCCTTGTTCCACCAAACTTTACACAGAGAAAAAGCAAACAA F N P H K F L L V P P N F T Q R K S K Q L I H I S F S L F H Q T L H R E K A N K - S T - V S P C S T K L Y T E K K Q T . . . . . . 14557 ATCCTTCAACAACAAAAGAAAATGTGCTCACCGCGTTTTTCCTATCTGAGAGATACTTCC I L Q Q Q K K M C S P R F S Y L R D T S S F N N K R K C A H R V F P I - E I L P N P S T T K E N V L T A F F L S E R Y F . . . . . . 14617 TTAGCTGTTAAAAAAACTCCTCACAACCCCTAAAAATCCTCTCTTTTTTCAGTTTTAATT L A V K K T P H N P - K S S L F S V L I - L L K K L L T T P K N P L F F Q F - F L S C - K N S S Q P L K I L S F F S F N . . . . . . 14677 CTTCCCCAATTCTTGAAAATTCATTTCTAAAGCTTTCTTCATCTCTGCTTCAAAGCTACT L P Q F L K I H F - S F L H L C F K A T F P N S - K F I S K A F F I S A S K L L S S P I L E N S F L K L S S S L L Q S Y . . . . . . 14737 TCACCCCACCCACCCCCACAATATAAATAAACTTTGAAGAAATTGCTGAGTTTGTTCAGT S P H P P P Q Y K - T L K K L L S L F S H P T H P H N I N K L - R N C - V C S V F T P P T P T I - I N F E E I A E F V Q . . . . . . 14797 TTTTCTGAAATCAAGAATGATGGGTAATAGAGATCTGGAGAGGGGAGGTGGAACAAAGCC F S E I K N D G - - R S G E G R W N K A F L K S R M M G N R D L E R G G G T K P F F - N Q E - W V I E I W R G E V E Q S . . . . . . 14857 AAGAAATGGGAGTTACCAACCACCCCCAACAACAGCAGCACCTTACTATATGGAAACTTC K K W E L P T T P N N S S T L L Y G N F R N G S Y Q P P P T T A A P Y Y M E T S Q E M G V T N H P Q Q Q Q H L T I W K L . . . . . . 14917 TGAATCACAGTGGACTTCTTGGCTAGTCCCTATGATTGTTGTAGCCAATGTAGCTATGTT - I T V D F L A S P Y D C C S Q C S Y V E S Q W T S W L V P M I V V A N V A M F L N H S G L L G - S L - L L - P M - L C . . . . . . 14977 TATTGTCATCATGTTTGTTAACAATTGCCCAAGTAATATCAATAATTTTGGCAGAGGTGG Y C H H V C - Q L P K - Y Q - F W Q R W I V I M F V N N C P S N I N N F G R G G L L S S C L L T I A Q V I S I I L A E V . . . . . . 15037 AGGACGCCGCCAGTGTGTTGCCAGGTTTCTTGGGAGGCTTTCTTTTCAACCTCTTCAAGA R T P P V C C Q V S W E A F F S T S S R G R R Q C V A R F L G R L S F Q P L Q D E D A A S V L P G F L G G F L F N L F K . . . : . . . 15097 TAATCCACTTTTTGGACCCTCTTCATCCAC : ACTACAAAATTTGGGAGCTCTAGAATGGGA - S T F W T L F I H : T T K F G S S R M G N P L F G P S S S T : L Q N L G A L E W D I I H F L D P L H P : H Y K I W E L - N G . . . . . . 17264 TAAAGTAGTGCACGGACATCAGGGCTGGAGGCTTTTCACTTGTATCTGGTTACATGCTGG - S S A R T S G L E A F H L Y L V T C W K V V H G H Q G W R L F T C I W L H A G I K - C T D I R A G G F S L V S G Y M L . . . . . . 17324 TGTTGTTCATCTGCTTGCAAACATGTTGAGTTTGGTATTCATTGGTATTCGCCTCGAGCA C C S S A C K H V E F G I H W Y S P R A V V H L L A N M L S L V F I G I R L E Q V L F I C L Q T C - V W Y S L V F A S S . . : . . . . 17384 GCAGTTTGGATTTG : TCCGGGTGGGGATTATCTACGTTTTGTCAGGAATTGGTGGCAGTGT A V W I C : P G G D Y L R F V R N W W Q C Q F G F : V R V G I I Y V L S G I G G S V S S L D L : S G W G L S T F C Q E L V A V . . . . . . 17770 TCTTTCTTGCCTTTTCATTCAAGGTAGCATCTCTGTTGGAGCTTCTGGTGCTCTATTTGG S F L P F H S R - H L C W S F W C S I W L S C L F I Q G S I S V G A S G A L F G F F L A F S F K V A S L L E L L V L Y L . . . . . . : 17830 ACTTCTGGGAGCAATGTTATCGGAGCTTCTTACTAACTGGAGTATATATACCAATAAG : GC T S G S N V I G A S Y - L E Y I Y Q - : G L L G A M L S E L L T N W S I Y T N K : A D F W E Q C Y R S F L L T G V Y I P I R : . . . . . . 18014 TGCAGCTCTTATCACTCTCATTATCATCATCGCGATTAACTTAGCTGTTGGTCTTCTTCC C S S Y H S H Y H H R D - L S C W S S S A A L I T L I I I I A I N L A V G L L P L Q L L S L S L S S S R L T - L L V F F . . . . . . 18074 TCATGTCGATAACTATGCCCATATTGGAGGTTTCATGGGTGGTTTTCTTCTTGGCTTTGT S C R - L C P Y W R F H G W F S S W L C H V D N Y A H I G G F M G G F L L G F V L M S I T M P I L E V S W V V F F L A L . . . . . . 18134 TCTGCTACTACGACCTCAGTTTGGTTGGCTCGAAAGGCAACATCTTCCAGCTGAAGGTCG S A T T T S V W L A R K A T S S S - R S L L L R P Q F G W L E R Q H L P A E G R F C Y Y D L S L V G S K G N I F Q L K V . . . . . . 18194 TCTCAAGTCCAAGTTCAAAGCTTACCAATACGTCCTCCTGCTGATTGCCTCGATTTTGTT S Q V Q V Q S L P I R P P A D C L D F V L K S K F K A Y Q Y V L L L I A S I L L V S S P S S K L T N T S S C - L P R F C . : . . . . . 18254 GATTGTCGG : ATTCACTGTGGGATTGGTGATGTTATTTAGAGGTGTGAAGGCAAATGAGCA D C R : I H C G I G D V I - R C E G K - A I V G : F T V G L V M L F R G V K A N E H - L S : D S L W D W - C Y L E V - R Q M S . . . . . . 18690 TTGCGATTGGTGTCGTTATTTAAGCTGTTTGCGTACATCAAGATGGAACTGTGAAAATTA L R L V S L F K L F A Y I K M E L - K L C D W C R Y L S C L R T S R W N C E N - I A I G V V I - A V C V H Q D G T V K I . . . . . . 18750 ACTGAAGAGCTTTATGTAATTCTGTCCTCCTTTTTACATTAGACCAAAAAAAAAAAAACA T E E L Y V I L S S F L H - T K K K K T L K S F M - F C P P F Y I R P K K K K H N - R A L C N S V L L F T L D Q K K K N . . . . . . 18810 TATAGTTACGTATATTACTTTTATATGTATAGTGATTGTTGGTTTTGTAATTTGTGGTAT Y S Y V Y Y F Y M Y S D C W F C N L W Y I V T Y I T F I C I V I V G F V I C G M I - L R I L L L Y V - - L L V L - F V V . . . . . . 18870 GGATCATATATTGTAAATCTGTTATACTATTTGCATTCGATCTATATTCTTTATGTTCAG G S Y I V N L L Y Y L H S I Y I L Y V Q D H I L - I C Y T I C I R S I F F M F R W I I Y C K S V I L F A F D L Y S L C S . . . 18930 AAAGGTAACAAAAATATACGAAAGAAAA K G N K N I R K K K V T K I Y E R K E R - Q K Y T K E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-3_AGS-1_PPS_1 (14786 15126,17234 17397,17724 17887,18012 18262,18639 18750) (frame '2'; 1029 bp, 343 residues) 1 VCSVFLKSRM MGNRDLERGG GTKPRNGSYQ PPPTTAAPYY METSESQWTS WLVPMIVVAN 61 VAMFIVIMFV NNCPSNINNF GRGGGRRQCV ARFLGRLSFQ PLQDNPLFGP SSSTLQNLGA 121 LEWDKVVHGH QGWRLFTCIW LHAGVVHLLA NMLSLVFIGI RLEQQFGFVR VGIIYVLSGI 181 GGSVLSCLFI QGSISVGASG ALFGLLGAML SELLTNWSIY TNKAAALITL IIIIAINLAV 241 GLLPHVDNYA HIGGFMGGFL LGFVLLLRPQ FGWLERQHLP AEGRLKSKFK AYQYVLLLIA 301 SILLIVGFTV GLVMLFRGVK ANEHCDWCRY LSCLRTSRWN CEN- AGS-2 (16792 17321) SCR (e 1.000) Exon 1 16792 17321 ( 530 n); score: 1.000 PGS (16792 17321) SGN-E275263+ 3-phase translation of AGS-2 (+strand): . . . . . . 16792 TTACAGTTGGATGGAACGAACATTTATTAACCCCTTGGTAAAATTTTACAAAATTAAGCA L Q L D G T N I Y - P L G K I L Q N - A Y S W M E R T F I N P L V K F Y K I K H T V G W N E H L L T P W - N F T K L S . . . . . . 16852 CAAATAGGAGAGTGCTTTTGTCGGAAACTTTACAGCAATATCTAAGGGAGAATTCCCTTC Q I G E C F C R K L Y S N I - G R I P F K - E S A F V G N F T A I S K G E F P S T N R R V L L S E T L Q Q Y L R E N S L . . . . . . 16912 CGCCATCTTAAGAGTGTTTGTGTACATGGAGGGAATTGAATAGCCTTTCTTTTTCTGGCA R H L K S V C V H G G N - I A F L F L A A I L R V F V Y M E G I E - P F F F W H P P S - E C L C T W R E L N S L S F S G . . . . . . 16972 TTTTGGAGATAAGTAGATCCGTTGGGATAGCGGTTGTGATGCAATAGTTGTTGCTATATT F W R - V D P L G - R L - C N S C C Y I F G D K - I R W D S G C D A I V V A I L I L E I S R S V G I A V V M Q - L L L Y . . . . . . 17032 GGTTCCATTGAGTATCAAGTCTTCTGGAGTTAAATGGGTGAATGTGCTATTGCTGACGTC G S I E Y Q V F W S - M G E C A I A D V V P L S I K S S G V K W V N V L L L T S W F H - V S S L L E L N G - M C Y C - R . . . . . . 17092 CTACTTGCTGCTATGCCACGCACCGATATCACTCATACTGGAAAGATAAAATAAAATGAA L L A A M P R T D I T H T G K I K - N E Y L L L C H A P I S L I L E R - N K M K P T C C Y A T H R Y H S Y W K D K I K - . . . . . . 17152 ATAGAAACCAAAAGGCAAAAAATGGAAGACAGATTGATATATATGAACTGCTATATATTC I E T K R Q K M E D R L I Y M N C Y I F - K P K G K K W K T D - Y I - T A I Y S N R N Q K A K N G R Q I D I Y E L L Y I . . . . . . 17212 ATTCTTTCTTGTTCTTGTGCAGACTACAAAATTTGGGAGCTCTAGAATGGGATAAAGTAG I L S C S C A D Y K I W E L - N G I K - F F L V L V Q T T K F G S S R M G - S S H S F L F L C R L Q N L G A L E W D K V . . . . . 17272 TGCACGGACATCAGGGCTGGAGGCTTTTCACTTGTATCTGGTTACATGCT C T D I R A G G F S L V S G Y M A R T S G L E A F H L Y L V T C V H G H Q G W R L F T C I W L H A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 17321 AGCATGTAACCAGATACAAGTGAAAAGCCTCCAGCCCTGATGTCCGTGCACTACTTTATC S M - P D T S E K P P A L M S V H Y F I A C N Q I Q V K S L Q P - C P C T T L S H V T R Y K - K A S S P D V R A L L Y . . . . . . 17261 CCATTCTAGAGCTCCCAAATTTTGTAGTCTGCACAAGAACAAGAAAGAATGAATATATAG P F - S S Q I L - S A Q E Q E R M N I - H S R A P K F C S L H K N K K E - I Y S P I L E L P N F V V C T R T R K N E Y I . . . . . . 17201 CAGTTCATATATATCAATCTGTCTTCCATTTTTTGCCTTTTGGTTTCTATTTCATTTTAT Q F I Y I N L S S I F C L L V S I S F Y S S Y I S I C L P F F A F W F L F H F I A V H I Y Q S V F H F L P F G F Y F I L . . . . . . 17141 TTTATCTTTCCAGTATGAGTGATATCGGTGCGTGGCATAGCAGCAAGTAGGACGTCAGCA F I F P V - V I S V R G I A A S R T S A L S F Q Y E - Y R C V A - Q Q V G R Q Q F Y L S S M S D I G A W H S S K - D V S . . . . . . 17081 ATAGCACATTCACCCATTTAACTCCAGAAGACTTGATACTCAATGGAACCAATATAGCAA I A H S P I - L Q K T - Y S M E P I - Q - H I H P F N S R R L D T Q W N Q Y S N N S T F T H L T P E D L I L N G T N I A . . . . . . 17021 CAACTATTGCATCACAACCGCTATCCCAACGGATCTACTTATCTCCAAAATGCCAGAAAA Q L L H H N R Y P N G S T Y L Q N A R K N Y C I T T A I P T D L L I S K M P E K T T I A S Q P L S Q R I Y L S P K C Q K . . . . . . 16961 AGAAAGGCTATTCAATTCCCTCCATGTACACAAACACTCTTAAGATGGCGGAAGGGAATT R K A I Q F P P C T Q T L L R W R K G I E R L F N S L H V H K H S - D G G R E F K K G Y S I P S M Y T N T L K M A E G N . . . . . . 16901 CTCCCTTAGATATTGCTGTAAAGTTTCCGACAAAAGCACTCTCCTATTTGTGCTTAATTT L P - I L L - S F R Q K H S P I C A - F S L R Y C C K V S D K S T L L F V L N F S P L D I A V K F P T K A L S Y L C L I . . . . . 16841 TGTAAAATTTTACCAAGGGGTTAATAAATGTTCGTTCCATCCAACTGTAA C K I L P R G - - M F V P S N C V K F Y Q G V N K C S F H P T V L - N F T K G L I N V R S I Q L - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-3_AGS-2_PPS_1 (17091 16837) (frame '0'; 252 bp, 84 residues) 1 DVSNSTFTHL TPEDLILNGT NIATTIASQP LSQRIYLSPK CQKKKGYSIP SMYTNTLKMA 61 EGNSPLDIAV KFPTKALSYL CLIL- >C08HBa0197J17.1-_PGL-3_AGS-2_PPS_2 (17298 17092) (frame '0'; 204 bp, 68 residues) 1 KASSPDVRAL LYPILELPNF VVCTRTRKNE YIAVHIYQSV FHFLPFGFYF ILFYLSSMSD 61 IGAWHSSK- AGS-3 (18014 18262,18639 18897,18930 18943) SCR (e 0.992 d 0.866 a 0.990,e 0.988 d 0.000 a 0.980,e 0.714) Exon 1 18014 18262 ( 249 n); score: 0.992 Intron 1 18263 18638 ( 376 n); Pd: 0.866 Pa: 0.990 Exon 2 18639 18897 ( 259 n); score: 0.988 Intron 2 18898 18929 ( 32 n); Pd: 0.000 Pa: 0.980 Exon 3 18930 18943 ( 14 n); score: 0.714 PGS (18014 18262,18639 18897,18930 18943) SGN-E225393- PGS (18155 18262,18639 18897,18930 18943) SGN-E225836- 3-phase translation of AGS-3 (+strand): . . . . . . 18014 TGCAGCTCTTATCACTCTCATTATCATCATCGCGATTAACTTAGCTGTTGGTCTTCTTCC C S S Y H S H Y H H R D - L S C W S S S A A L I T L I I I I A I N L A V G L L P Q L L S L S L S S S R L T - L L V F F . . . . . . 18074 TCATGTCGATAACTATGCCCATATTGGAGGTTTCATGGGTGGTTTTCTTCTTGGCTTTGT S C R - L C P Y W R F H G W F S S W L C H V D N Y A H I G G F M G G F L L G F V L M S I T M P I L E V S W V V F F L A L . . . . . . 18134 TCTGCTACTACGACCTCAGTTTGGTTGGCTCGAAAGGCAACATCTTCCAGCTGAAGGTCG S A T T T S V W L A R K A T S S S - R S L L L R P Q F G W L E R Q H L P A E G R F C Y Y D L S L V G S K G N I F Q L K V . . . . . . 18194 TCTCAAGTCCAAGTTCAAAGCTTACCAATACGTCCTCCTGCTGATTGCCTCGATTTTGTT S Q V Q V Q S L P I R P P A D C L D F V L K S K F K A Y Q Y V L L L I A S I L L V S S P S S K L T N T S S C - L P R F C . : . . . . . 18254 GATTGTCGG : ATTCACTGTGGGATTGGTGATGTTATTTAGAGGTGTGAAGGCAAATGAGCA D C R : I H C G I G D V I - R C E G K - A I V G : F T V G L V M L F R G V K A N E H - L S : D S L W D W - C Y L E V - R Q M S . . . . . . 18690 TTGCGATTGGTGTCGTTATTTAAGCTGTTTGCGTACATCAAGATGGAACTGTGAAAATTA L R L V S L F K L F A Y I K M E L - K L C D W C R Y L S C L R T S R W N C E N - I A I G V V I - A V C V H Q D G T V K I . . . . . . 18750 ACTGAAGAGCTTTATGTAATTCTGTCCTCCTTTTTACATTAGACCAAAAAAAAAAAAACA T E E L Y V I L S S F L H - T K K K K T L K S F M - F C P P F Y I R P K K K K H N - R A L C N S V L L F T L D Q K K K N . . . . . . 18810 TATAGTTACGTATATTACTTTTATATGTATAGTGATTGTTGGTTTTGTAATTTGTGGTAT Y S Y V Y Y F Y M Y S D C W F C N L W Y I V T Y I T F I C I V I V G F V I C G M I - L R I L L L Y V - - L L V L - F V V . . . : . . 18870 GGATCATATATTGTAAATCTGTTATACT : AAAGGTAACAAAAA G S Y I V N L L Y : - R - Q K D H I L - I C Y T : K G N K W I I Y C K S V I L : K V T K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-3_AGS-3_PPS_1 (18015 18262,18639 18750) (frame '2'; 357 bp, 119 residues) 1 AALITLIIII AINLAVGLLP HVDNYAHIGG FMGGFLLGFV LLLRPQFGWL ERQHLPAEGR 61 LKSKFKAYQY VLLLIASILL IVGFTVGLVM LFRGVKANEH CDWCRYLSCL RTSRWNCEN- PGL 4 (- strand): 21854 20658 AGS-1 (21854 21655,21063 20658) SCR (e 1.000 d 0.842 a 0.995,e 1.000) Exon 1 21854 21655 ( 200 n); score: 1.000 Intron 1 21654 21064 ( 591 n); Pd: 0.842 Pa: 0.995 Exon 2 21063 20658 ( 406 n); score: 1.000 PGS (21845 21655,21063 20658) SGN-E553660+ PGS (21845 21655,21063 20658) SGN-E555906+ PGS (21836 21655,21063 20658) SGN-E554758+ PGS (21836 21655,21063 20658) SGN-E554956+ PGS (21836 21655,21063 20658) SGN-E555935+ PGS (21833 21655,21063 20658) SGN-E554435+ PGS (21839 21655,21063 20659) SGN-E554730+ PGS (21841 21655,21063 20665) SGN-E553423+ PGS (21005 20674) SGN-E244146+ PGS (21828 21655,21063 20681) SGN-E247671+ PGS (21854 21655,21063 20696) SGN-E554149+ 3-phase translation of AGS-1 (-strand): . . . . . . 21854 ATTAATCATCATCATCATAATAACAAAAAAAGAGAAGTATATAATTAAAAATCATGGGTA I N H H H H N N K K R E V Y N - K S W V L I I I I I I T K K E K Y I I K N H G - - S S S S - - Q K K R S I - L K I M G . . . . . . 21794 AAACTATGATAGTTGGAGCCATTTCTTTAGCCATCCTTTTCATGGCAGCCACAGTTTGTA K L - - L E P F L - P S F S W Q P Q F V N Y D S W S H F F S H P F H G S H S L - K T M I V G A I S L A I L F M A A T V C . . . . . . 21734 GCTCACGTATCATGACCATCACCATTGCTGAAGATGCTCTTAACCCTCAAACTCAAAGCT A H V S - P S P L L K M L L T L K L K A L T Y H D H H H C - R C S - P S N S K L S S R I M T I T I A E D A L N P Q T Q S . . : . . . . 21674 GCCAGCAGCAATTTCAACAG : GCACAGCAGCTACGTTCATGCCAGCAGTTTCTAAGGCAGA A S S N F N R : H S S Y V H A S S F - G R P A A I S T : G T A A T F M P A V S K A E C Q Q Q F Q Q : A Q Q L R S C Q Q F L R Q . . . . . . 21023 GGAGCCAGCAGTACGAGGACCAACAGATTCCTCGTGATGTTCAACAATGTTGCAATCAGC G A S S T R T N R F L V M F N N V A I S E P A V R G P T D S S - C S T M L Q S A R S Q Q Y E D Q Q I P R D V Q Q C C N Q . . . . . . 20963 TTGAACAGATACAAGACCCACAATGCCGTTGCGAGGGACTCATGAAAGTGGTTCAACAAG L N R Y K T H N A V A R D S - K W F N K - T D T R P T M P L R G T H E S G S T R L E Q I Q D P Q C R C E G L M K V V Q Q . . . . . . 20903 AGGAACAAACCGGGAAAGTTCAAGGAAGACAAAGGCAACAGATGCTTCAAACTGCAGAGA R N K P G K F K E D K G N R C F K L Q R G T N R E S S R K T K A T D A S N C R E E E Q T G K V Q G R Q R Q Q M L Q T A E . . . . . . 20843 ATTTGCCTGGTTTATGTAGACTTAGCCCACAACGATGTGAGATCCAAACTGTTCGCAGCT I C L V Y V D L A H N D V R S K L F A A F A W F M - T - P T T M - D P N C S Q L N L P G L C R L S P Q R C E I Q T V R S . . . . . . 20783 TCTTTTAATTTGCAAAAATTATTTGTAAGCCTGCGTTCGCTTATAAATAAATAAATGATC S F N L Q K L F V S L R S L I N K - M I L L I C K N Y L - A C V R L - I N K - S F F - F A K I I C K P A F A Y K - I N D . . . . . . 20723 TAGTTGTTGTAAAACTCGATCGTAGTAATAAAATAAAATCACACCTTCTGGTGTGATTTT - L L - N S I V V I K - N H T F W C D F S C C K T R S - - - N K I T P S G V I F L V V V K L D R S N K I K S H L L V - F . 20663 TCTCTC S L L F S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-4_AGS-1_PPS_1 (21810 21655,21063 20776) (frame '0'; 441 bp, 147 residues) 1 LKIMGKTMIV GAISLAILFM AATVCSSRIM TITIAEDALN PQTQSCQQQF QQAQQLRSCQ 61 QFLRQRSQQY EDQQIPRDVQ QCCNQLEQIQ DPQCRCEGLM KVVQQEEQTG KVQGRQRQQM 121 LQTAENLPGL CRLSPQRCEI QTVRSFF- PGL 5 (+ strand): 22364 22492 AGS-1 (22364 22492) SCR (e 0.922) Exon 1 22364 22492 ( 129 n); score: 0.922 PGS (22364 22471) SGN-E378080- PGS (22365 22492) SGN-E379427- PGS (22376 22477) SGN-E578389- 3-phase translation of AGS-1 (+strand): . . . . . . 22364 AATTTTACTAAGGGCAACTTTCACATATAGCAAATAAAAAATTTATATTTGTATGCTATA N F T K G N F H I - Q I K N L Y L Y A I I L L R A T F T Y S K - K I Y I C M L - F Y - G Q L S H I A N K K F I F V C Y . . . . . . 22424 GCAAAGTTTGCATAATTGCGCTCCATAACAAACATAGAAACTATATAATTCGCTATACAT A K F A - L R S I T N I E T I - F A I H Q S L H N C A P - Q T - K L Y N S L Y I S K V C I I A L H N K H R N Y I I R Y T . 22484 ATACAGTTG I Q L Y S Y T V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 22492 CAACTGTATATGTATAGCGAATTATATAGTTTCTATGTTTGTTATGGAGCGCAATTATGC Q L Y M Y S E L Y S F Y V C Y G A Q L C N C I C I A N Y I V S M F V M E R N Y A T V Y V - R I I - F L C L L W S A I M . . . . . . 22432 AAACTTTGCTATAGCATACAAATATAAATTTTTTATTTGCTATATGTGAAAGTTGCCCTT K L C Y S I Q I - I F Y L L Y V K V A L N F A I A Y K Y K F F I C Y M - K L P L Q T L L - H T N I N F L F A I C E S C P . 22372 AGTAAAATT S K I V K - - N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (- strand): 26576 24309 AGS-1 (26576 26308,24750 24309) SCR (e 0.974 d 0.999 a 0.923,e 0.993) Exon 1 26576 26308 ( 269 n); score: 0.974 Intron 1 26307 24751 (1557 n); Pd: 0.999 Pa: 0.923 Exon 2 24750 24309 ( 442 n); score: 0.993 PGS (26526 26308,24750 24309) SGN-E551762+ PGS (26526 26308,24750 24309) SGN-E553955+ PGS (26576 26308,24750 24434) SGN-E243182+ 3-phase translation of AGS-1 (-strand): . . . . . . 26576 ATTTTCACTATGGTGGGTAAAGTAATAATATTTGGAGTAACATGTTTAGCCATACTTTTT I F T M V G K V I I F G V T C L A I L F F S L W W V K - - Y L E - H V - P Y F L F H Y G G - S N N I W S N M F S H T F . . . . . . 26516 ATGGGAGTTACTACAGCTAGTAGCTTTCGTACTACAATTACTATAGCTGAAAACCCATGG M G V T T A S S F R T T I T I A E N P W W E L L Q L V A F V L Q L L - L K T H G Y G S Y Y S - - L S Y Y N Y Y S - K P M . . . . . . 26456 GAACAAATGTCTCAACGTTGCCAAATGGAAATGCAAAGGGCACAGAATTTACGTGCTTGT E Q M S Q R C Q M E M Q R A Q N L R A C N K C L N V A K W K C K G H R I Y V L V G T N V S T L P N G N A K G T E F T C L . . . . . . 26396 GAAGAGTATTTAAGACAAAGTACAAAATTTACTGAAGAGGGAAGATATATGGATCAACAA E E Y L R Q S T K F T E E G R Y M D Q Q K S I - D K V Q N L L K R E D I W I N K - R V F K T K Y K I Y - R G K I Y G S T . . . : . . . 26336 AGTGGAGACTGGCGCCAATCATTCCCAAG : GTGCTGCGAGCAAATGGAACAGATGCAAGAC S G D W R Q S F P R : C C E Q M E Q M Q D V E T G A N H S Q : G A A S K W N R C K T K W R L A P I I P K : V L R A N G T D A R . . . . . . 24719 GAGCAATGTCGGTGCGAGGGAATAAAACAAGTGATGCAACAAGAGCAACAAAGAGGAGAA E Q C R C E G I K Q V M Q Q E Q Q R G E S N V G A R E - N K - C N K S N K E E K R A M S V R G N K T S D A T R A T K R R . . . . . . 24659 ATGCAGGGTAGAGAAATGCGTGAAGCTAGTAAAACTGCACAGAGCCTTCCTGGTTTATGC M Q G R E M R E A S K T A Q S L P G L C C R V E K C V K L V K L H R A F L V Y A N A G - R N A - S - - N C T E P S W F M . . . . . . 24599 CGTATGAGTCCTCACCAATGCCATAATATTCCAACTCCAACTTTCTATTAAGTAATAATA R M S P H Q C H N I P T P T F Y - V I I V - V L T N A I I F Q L Q L S I K - - - P Y E S S P M P - Y S N S N F L L S N N . . . . . . 24539 ATTAATTATGAAAAATAGCAAAGCTTTAGTTAGCTTGCTTTTTTATTTTGTAATAAAAAT I N Y E K - Q S F S - L A F L F C N K N L I M K N S K A L V S L L F Y F V I K I N - L - K I A K L - L A C F F I L - - K . . . . . . 24479 AAAATGAAGTAGCAAGTACCTAAATAATGAATAATTAATCACCACATTATGGTGCCTGTG K M K - Q V P K - - I I N H H I M V P V K - S S K Y L N N E - L I T T L W C L C - N E V A S T - I M N N - S P H Y G A C . . . . . . 24419 TTGTGTTTACCAGGCAGCTTAATTTGGTGTGTTTGAAATGTTTTTGTCTAATTAATAATA L C L P G S L I W C V - N V F V - L I I C V Y Q A A - F G V F E M F L S N - - - V V F T R Q L N L V C L K C F C L I N N . . . . . . 24359 AACTAGTCTTTTGCTTATTGGTAATATATTTTTTATTTCATATTAATTGAA N - S F A Y W - Y I F Y F I L I E T S L L L I G N I F F I S Y - L K L V F C L L V I Y F L F H I N - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-6_AGS-1_PPS_1 (26576 26308,24750 24549) (frame '1'; 468 bp, 156 residues) 1 IFTMVGKVII FGVTCLAILF MGVTTASSFR TTITIAENPW EQMSQRCQME MQRAQNLRAC 61 EEYLRQSTKF TEEGRYMDQQ SGDWRQSFPR CCEQMEQMQD EQCRCEGIKQ VMQQEQQRGE 121 MQGREMREAS KTAQSLPGLC RMSPHQCHNI PTPTFY- AGS-2 (25911 25783) SCR (e 0.860) Exon 1 25911 25783 ( 129 n); score: 0.860 PGS (25911 25783) SGN-E208987- 3-phase translation of AGS-2 (-strand): . . . . . . 25911 AAAAAAAAATATTCTAAAACTATATGAAAAGTACTATAAGTTACAGTATTTTGCATATTA K K K Y S K T I - K V L - V T V F C I L K K N I L K L Y E K Y Y K L Q Y F A Y - K K I F - N Y M K S T I S Y S I L H I . . . . . . 25851 ATATGATTGAAAAAATGCTATCTTAAAATGTTAGTCAAATTTTTTATAGTTTGACTTTTA I - L K K C Y L K M L V K F F I V - L L Y D - K N A I L K C - S N F L - F D F - N M I E K M L S - N V S Q I F Y S L T F . 25791 AAAATAGAA K I E K - K N R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 25783 TTCTATTTTTAAAAGTCAAACTATAAAAAATTTGACTAACATTTTAAGATAGCATTTTTT F Y F - K S N Y K K F D - H F K I A F F S I F K S Q T I K N L T N I L R - H F F L F L K V K L - K I - L T F - D S I F . . . . . . 25843 CAATCATATTAATATGCAAAATACTGTAACTTATAGTACTTTTCATATAGTTTTAGAATA Q S Y - Y A K Y C N L - Y F S Y S F R I N H I N M Q N T V T Y S T F H I V L E Y S I I L I C K I L - L I V L F I - F - N . 25903 TTTTTTTTT F F F F F I F F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 33123 29273 AGS-1 (33123 32486,30926 30729,30295 30218,30146 29273) SCR (e 1.000 d 0.970 a 0.978,e 1.000 d 0.983 a 0.993,e 1.000 d 0.999 a 0.946,e 1.000) Exon 1 33123 32486 ( 638 n); score: 1.000 Intron 1 32485 30927 (1559 n); Pd: 0.970 Pa: 0.978 Exon 2 30926 30729 ( 198 n); score: 1.000 Intron 2 30728 30296 ( 433 n); Pd: 0.983 Pa: 0.993 Exon 3 30295 30218 ( 78 n); score: 1.000 Intron 3 30217 30147 ( 71 n); Pd: 0.999 Pa: 0.946 Exon 4 30146 29273 ( 874 n); score: 1.000 PGS (29626 29273) SGN-E249961+ PGS (29725 29286) SGN-E207727- PGS (30008 29581) SGN-E308808+ PGS (30926 30729,30295 30218,30146 29993) SGN-E304620+ PGS (32930 32486,30926 30825) SGN-E245710+ PGS (33076 32768) SGN-E280764+ PGS (33123 32811) SGN-E313456+ 3-phase translation of AGS-1 (-strand): . . . . . . 33123 AAGAAGCACATTATTTTTGACTTCTCTTCCATTTCACACAAATCTCTCTTCTTCTTCTTC K K H I I F D F S S I S H K S L F F F F R S T L F L T S L P F H T N L S S S S S E A H Y F - L L F H F T Q I S L L L L . . . . . . 33063 TCACTCGTTCACTTCCATTTCTCTGCAAACAGAACAAAAAAAAATGTTTTTTTTCAATCC S L V H F H F S A N R T K K N V F F Q S H S F T S I S L Q T E Q K K M F F F N P L T R S L P F L C K Q N K K K C F F S I . . . . . . 33003 AATTTCTATATTTTAAATAAATGGGCAAAGCATCCAAATGGTTTAGAGGTCTTCTTGGCC N F Y I L N K W A K H P N G L E V F L A I S I F - I N G Q S I Q M V - R S S W P Q F L Y F K - M G K A S K W F R G L L G . . . . . . 32943 TAAAAAAACAGGACCCATCATCTTCCTCTAACCAAAATCCAAAACCCACAAAGAAAAAAT - K N R T H H L P L T K I Q N P Q R K N K K T G P I I F L - P K S K T H K E K M L K K Q D P S S S S N Q N P K P T K K K . . . . . . 32883 GGAGCTTTGTTAAATCTTACAGAGAAAAAGACTCTAACTTTGTAAAGGGAACTGATAAAG G A L L N L T E K K T L T L - R E L I K E L C - I L Q R K R L - L C K G N - - R W S F V K S Y R E K D S N F V K G T D K . . . . . . 32823 AATCATCAAACTATGGTCGGGTTGTGTCGAATTCACTTCAAAACGGCGCTGTTGGGTGTA N H Q T M V G L C R I H F K T A L L G V I I K L W S G C V E F T S K R R C W V - E S S N Y G R V V S N S L Q N G A V G C . . . . . . 32763 GTGTTGATTCGTCAAAGCGAGCGATTGCGGTGGCGGAAGCAACCGCCGTTGTAGCGGAAG V L I R Q S E R L R W R K Q P P L - R K C - F V K A S D C G G G S N R R C S G S S V D S S K R A I A V A E A T A V V A E . . . . . . 32703 CTGCTATCGCCGCCGCTCAAGCCGCGGCGGCGGTGGTGAAGCTTACTAATAGTGGTAGAG L L S P P L K P R R R W - S L L I V V E C Y R R R S S R G G G G E A Y - - W - S A A I A A A Q A A A A V V K L T N S G R . . . . . . 32643 CTACTACTGCAACTAATGGCGGTGCCGCTGCTGTTACGACGTGGAACGGCGTTTCTCTTA L L L Q L M A V P L L L R R G T A F L L Y Y C N - W R C R C C Y D V E R R F S Y A T T A T N G G A A A V T T W N G V S L . . . . . . 32583 CCTCCTCTGCGGTGGGTTGTAAAAGAAAGGGAGTCGCCGCCGGCAACCGTGAAAATTGGG P P L R W V V K E R E S P P A T V K I G L L C G G L - K K G S R R R Q P - K L G T S S A V G C K R K G V A A G N R E N W . . . . : . . 32523 CCGCCGTTGTTATTCAATCACATTTCCGAGCTTATTTG : TCGAGGAGAGCTTTACGCGCGT P P L L F N H I S E L I C : R G E L Y A R R R C Y S I T F P S L F : V E E S F T R V A A V V I Q S H F R A Y L : S R R A L R A . . . . . . 30904 TAAAGGGACTGGTGAAGCTTCAAGCACTGGTGAGAGGTCACATTATTAGGCGACAGACTG - R D W - S F K H W - E V T L L G D R L K G T G E A S S T G E R S H Y - A T D C L K G L V K L Q A L V R G H I I R R Q T . . . . . . 30844 CTGATTATCTACGGCAAATGCAAGCAATATCCAGAGCTCAGTCGAGGGCTCGTGCTGGAC L I I Y G K C K Q Y P E L S R G L V L D - L S T A N A S N I Q S S V E G S C W T A D Y L R Q M Q A I S R A Q S R A R A G . . . . . . : 30784 GATCTCAGGTCTCAGGATCCCCTCATTCAAGCACTAAGTCTGTTCAATTTGTTCAT : GATC D L R S Q D P L I Q A L S L F N L F M : I I S G L R I P S F K H - V C S I C S : - S R S Q V S G S P H S S T K S V Q F V H : D . . . . . . 30291 CTACAACTCCAGAGAAATTTGAGCATGTTATCCGCGCAAGGAGCTTGAAGCATGATGAAA L Q L Q R N L S M L S A Q G A - S M M K Y N S R E I - A C Y P R K E L E A - - N P T T P E K F E H V I R A R S L K H D E . . : . . . . 30231 CATCTGTGCTCAAG : AGGAATACCTCTAAATCAAATTGGAAGGTCATTGACTCGGAAAAGG H L C S R : G I P L N Q I G R S L T R K R I C A Q : E E Y L - I K L E G H - L G K G T S V L K : R N T S K S N W K V I D S E K . . . . . . 30100 CACGAATTAGACCTCAAGGATCTTCTGCAAGAACTAGTTCTATTGATGACGAAAAGAGTG H E L D L K D L L Q E L V L L M T K R V T N - T S R I F C K N - F Y - - R K E - A R I R P Q G S S A R T S S I D D E K S . . . . . . 30040 ACAAGATCCTCGAGATAGATACCGGGAAACCATATGTTACGCCTAAACAAAGGAACCTCT T R S S R - I P G N H M L R L N K G T S Q D P R D R Y R E T I C Y A - T K E P L D K I L E I D T G K P Y V T P K Q R N L . . . . . . 29980 TCCACTCCTCACATCTTTGCTTGAACTCTGACCAATACAGCTATAGCTTAACAACGTCGA S T P H I F A - T L T N T A I A - Q R R P L L T S L L E L - P I Q L - L N N V E F H S S H L C L N S D Q Y S Y S L T T S . . . . . . 29920 AGGAATCAACAGCTCATCAAACGGTTCCCAGTCCATCGTCCTGTGGAAATCAACCCCTTA R N Q Q L I K R F P V H R P V E I N P L G I N S S S N G S Q S I V L W K S T P - K E S T A H Q T V P S P S S C G N Q P L . . . . . . 29860 GTCCCCTGAAGTTCAATGAAGATCTTGATGAAGCTTGCTTCTGCACTGCTGACAATAGCC V P - S S M K I L M K L A S A L L T I A S P E V Q - R S - - S L L L H C - Q - P S P L K F N E D L D E A C F C T A D N S . . . . . . 29800 CTCAGTTTTACTCGGCTTCATCAAAGGGCGGTAGTTCAAAGAGAGGACCTTTTACACCAA L S F T R L H Q R A V V Q R E D L L H Q S V L L G F I K G R - F K E R T F Y T N P Q F Y S A S S K G G S S K R G P F T P . . . . . . 29740 CTAAGAGCGACGGTTCAAGAAGCTATATGAGTGGTTACTCTGATCATCCCAACTACATGT L R A T V Q E A I - V V T L I I P T T C - E R R F K K L Y E W L L - S S Q L H V T K S D G S R S Y M S G Y S D H P N Y M . . . . . . 29680 CCTACACAGAGTCCTCGAAGGCCAAGGTACGTTCAATGAGCGCACCTAAACAAAGGCCTC P T Q S P R R P R Y V Q - A H L N K G L L H R V L E G Q G T F N E R T - T K A S S Y T E S S K A K V R S M S A P K Q R P . . . . . . 29620 ACTATGAGAGATCAAGTTCAACAAAAAGGTACTCGATTCACGGGTACAGTGAGTCAAGAA T M R D Q V Q Q K G T R F T G T V S Q E L - E I K F N K K V L D S R V Q - V K K H Y E R S S S T K R Y S I H G Y S E S R . . . . . . 29560 ACAACTCACAAAAGGGTTCTTTTTATGCCAACTTCACTGGTAAAGCTTATCCTGGTTCTG T T H K R V L F M P T S L V K L I L V L Q L T K G F F L C Q L H W - S L S W F W N N S Q K G S F Y A N F T G K A Y P G S . . . . . . 29500 GTCGATTGGACCGGCTTGGAATGCCTGTTATCAGGGCAGATCCATCTGGATTCAGTGGTG V D W T G L E C L L S G Q I H L D S V V S I G P A W N A C Y Q G R S I W I Q W W G R L D R L G M P V I R A D P S G F S G . . . . . . 29440 GTCTTCGACACAGATATTAAGCCAGATATTGTAATTGAAAACTAACCAGATGTAACTAAT V F D T D I K P D I V I E N - P D V T N S S T Q I L S Q I L - L K T N Q M - L I G L R H R Y - A R Y C N - K L T R C N - . . . . . . 29380 TATGAATATCTAATGTCTTGTGTCAAGGCCATGGTGCTAATGTGATGCATTTTATGTCTA Y E Y L M S C V K A M V L M - C I L C L M N I - C L V S R P W C - C D A F Y V - L - I S N V L C Q G H G A N V M H F M S . . . . . 29320 GTTGGTAAACGAATGCAATCTCTTGGTTATGAAAAGTATTTGATTCGA V G K R M Q S L G Y E K Y L I R L V N E C N L L V M K S I - F S W - T N A I S W L - K V F D S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-7_AGS-1_PPS_1 (32983 32486,30926 30729,30295 30218,30146 29421) (frame '0'; 1497 bp, 499 residues) 1 MGKASKWFRG LLGLKKQDPS SSSNQNPKPT KKKWSFVKSY REKDSNFVKG TDKESSNYGR 61 VVSNSLQNGA VGCSVDSSKR AIAVAEATAV VAEAAIAAAQ AAAAVVKLTN SGRATTATNG 121 GAAAVTTWNG VSLTSSAVGC KRKGVAAGNR ENWAAVVIQS HFRAYLSRRA LRALKGLVKL 181 QALVRGHIIR RQTADYLRQM QAISRAQSRA RAGRSQVSGS PHSSTKSVQF VHDPTTPEKF 241 EHVIRARSLK HDETSVLKRN TSKSNWKVID SEKARIRPQG SSARTSSIDD EKSDKILEID 301 TGKPYVTPKQ RNLFHSSHLC LNSDQYSYSL TTSKESTAHQ TVPSPSSCGN QPLSPLKFNE 361 DLDEACFCTA DNSPQFYSAS SKGGSSKRGP FTPTKSDGSR SYMSGYSDHP NYMSYTESSK 421 AKVRSMSAPK QRPHYERSSS TKRYSIHGYS ESRNNSQKGS FYANFTGKAY PGSGRLDRLG 481 MPVIRADPSG FSGGLRHRY- PGL 8 (+ strand): 36973 41850 AGS-1 (36973 37456) SCR (e 0.860) Exon 1 36973 37456 ( 484 n); score: 0.860 PGS (36973 37456) SGN-E394609- PGS (36973 37456) SGN-E379112+ PGS (36973 37455) SGN-E379618- PGS (36973 37311) SGN-E394141+ PGS (36973 37264) SGN-E392605+ PGS (36976 37456) SGN-E393065- PGS (36997 37455) SGN-E200845- PGS (37120 37456) SGN-E393076- PGS (37148 37456) SGN-E393075- 3-phase translation of AGS-1 (+strand): . . . . . . 36973 GGAAAATTGTATAAAATAGCAAATTAATAATCTAAATTAAATTAAATAGCTAGGGTTTGA G K L Y K I A N - - S K L N - I A R V - E N C I K - Q I N N L N - I K - L G F D K I V - N S K L I I - I K L N S - G L . . . . . . 37033 TTTAATTGTGCTCTATAGCAAACATTGACAAAAATTTGCCAGGCGTCTCTCTCCCAGAAG F N C A L - Q T L T K I C Q A S L S Q K L I V L Y S K H - Q K F A R R L S P R S I - L C S I A N I D K N L P G V S L P E . . . . . . 37093 TCTCGCTCGTCACTCTCCCATTCTCGCCTCTCTCGCTTTATACACAGAAGTGTATAATTT S R S S L S H S R L S R F I H R S V - F L A R H S P I L A S L A L Y T E V Y N F V S L V T L P F S P L S L Y T Q K C I I . . . . . . 37153 CTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATC L F L F C I K R E K I V Y T H A K M Y I C F C F V - S E R K L Y I H M Q K C I S S V S V L Y K A R E N C I Y T C K N V Y . . . . . . 37213 TTCGTGTTATACACTTAATTATATAATTTACAAACATTTTACTTCAAATATTGCAGAGAA F V L Y T - L Y N L Q T F Y F K Y C R E S C Y T L N Y I I Y K H F T S N I A E K L R V I H L I I - F T N I L L Q I L Q R . . . . . . 37273 AAAGGCCAAAGAATTATACAATTGTGAATTATACAATTGCGAATTATACAATTGCAGTGA K G Q R I I Q L - I I Q L R I I Q L Q - K A K E L Y N C E L Y N C E L Y N C S E K R P K N Y T I V N Y T I A N Y T I A V . . . . . . 37333 AATACAATTTGTCTAGCTTTATACAACAGAAGTATATATATTGTGTTTGTGTTTTTGTAT N T I C L A L Y N R S I Y I V F V F L Y I Q F V - L Y T T E V Y I L C L C F C I K Y N L S S F I Q Q K Y I Y C V C V F V . . . . . . 37393 AAAGCGAGAAAAACATATATCTTCTTGCTATACACTCATAATTATGCAATATACATACAT K A R K T Y I F L L Y T H N Y A I Y I H K R E K H I S S C Y T L I I M Q Y T Y I - S E K N I Y L L A I H S - L C N I H T . 37453 TTTA F L F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-8_AGS-1_PPS_1 (37038 37238) (frame '0'; 198 bp, 66 residues) 1 LCSIANIDKN LPGVSLPEVS LVTLPFSPLS LYTQKCIISV SVLYKARENC IYTCKNVYLR 61 VIHLII- 3-phase translation of AGS-1 (-strand): . . . . . . 37456 TAAAATGTATGTATATTGCATAATTATGAGTGTATAGCAAGAAGATATATGTTTTTCTCG - N V C I L H N Y E C I A R R Y M F F S K M Y V Y C I I M S V - Q E D I C F S R K C M Y I A - L - V Y S K K I Y V F L . . . . . . 37396 CTTTATACAAAAACACAAACACAATATATATACTTCTGTTGTATAAAGCTAGACAAATTG L Y T K T Q T Q Y I Y F C C I K L D K L F I Q K H K H N I Y T S V V - S - T N C A L Y K N T N T I Y I L L L Y K A R Q I . . . . . . 37336 TATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCACAATTGTATAATTCTTTGGC Y F T A I V - F A I V - F T I V - F F G I S L Q L Y N S Q L Y N S Q L Y N S L A V F H C N C I I R N C I I H N C I I L W . . . . . . 37276 CTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACA L F L C N I - S K M F V N Y I I K C I T F F S A I F E V K C L - I I - L S V - H P F S L Q Y L K - N V C K L Y N - V Y N . . . . . . 37216 CGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAA R R Y T F L H V Y I Q F S L A L Y K T E E D I H F C M C I Y N F L S L Y T K Q K T K I Y I F A C V Y T I F S R F I Q N R . . . . . . 37156 ACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGAATGGGAGAGTGACGAGC T E I I H F C V - S E R G E N G R V T S Q K L Y T S V Y K A R E A R M G E - R A N R N Y T L L C I K R E R R E W E S D E . . . . . . 37096 GAGACTTCTGGGAGAGAGACGCCTGGCAAATTTTTGTCAATGTTTGCTATAGAGCACAAT E T S G R E T P G K F L S M F A I E H N R L L G E R R L A N F C Q C L L - S T I R D F W E R D A W Q I F V N V C Y R A Q . . . . . . 37036 TAAATCAAACCCTAGCTATTTAATTTAATTTAGATTATTAATTTGCTATTTTATACAATT - I K P - L F N L I - I I N L L F Y T I K S N P S Y L I - F R L L I C Y F I Q F L N Q T L A I - F N L D Y - F A I L Y N . 36976 TTCC F S F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-8_AGS-1_PPS_1 (37226 37014) (frame '0'; 210 bp, 70 residues) 1 VYNTKIYIFA CVYTIFSRFI QNRNRNYTLL CIKRERREWE SDERDFWERD AWQIFVNVCY 61 RAQLNQTLAI - AGS-2 (37248 37329,37498 37536,37567 37659,41826 41850) SCR (e 0.774 d 0.000 a 0.942,e 0.974 d 0.681 a 0.000,e 0.833 d 0.000 a 0.000,e 0.720) Exon 1 37248 37329 ( 82 n); score: 0.774 Intron 1 37330 37497 ( 168 n); Pd: 0.000 Pa: 0.942 Exon 2 37498 37536 ( 39 n); score: 0.974 Intron 2 37537 37566 ( 30 n); Pd: 0.681 Pa: 0.000 Exon 3 37567 37659 ( 93 n); score: 0.833 Intron 3 37660 41825 (4166 n); Pd: 0.000 Pa: 0.000 Exon 4 41826 41850 ( 25 n); score: 0.720 PGS (37248 37329,37498 37536,37567 37659,41826 41850) SGN-E578389+ 3-phase translation of AGS-2 (+strand): . . . . . . 37248 ATTTTACTTCAAATATTGCAGAGAAAAAGGCCAAAGAATTATACAATTGTGAATTATACA I L L Q I L Q R K R P K N Y T I V N Y T F Y F K Y C R E K G Q R I I Q L - I I Q F T S N I A E K K A K E L Y N C E L Y . . . : . . . 37308 ATTGCGAATTATACAATTGCAG : CGAAATAGGCCAGCGAATTATACAATTTAGGCCAGCGA I A N Y T I A : A K - A S E L Y N L G Q R L R I I Q L Q : R N R P A N Y T I - A S E N C E L Y N C S : E I G Q R I I Q F R P A . : . . . . . 37536 A : ACAATTTTTATGTTTGCTATGGAGCGCAATTATGCAAAGTTTGCTATATTATACAAATA : N N F Y V C Y G A Q L C K V C Y I I Q I : T I F M F A M E R N Y A K F A I L Y K Y K : Q F L C L L W S A I M Q S L L Y Y T N . . . . : . . 37626 TGATTTTTTTGTTTGCTATATGTGAAAGTTGCCC : ACAAATTGGACTATGTCAATAAAAT - F F C L L Y V K V A : H K L D Y V N K D F F V C Y M - K L P : T N W T M S I K M I F L F A I C E S C P : Q I G L C Q - N Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-8_AGS-2_PPS_1 (37250 37329,37498 37536,37567 37659,41826 41847) (frame '0'; 231 bp, 77 residues) 1 FTSNIAEKKA KELYNCELYN CELYNCSEIG QRIIQFRPAK QFLCLLWSAI MQSLLYYTNM 61 IFLFAICESC PQIGLCQ- AGS-3 (37480 37660) SCR (e 0.917) Exon 1 37480 37660 ( 181 n); score: 0.917 PGS (37480 37660) SGN-E379427+ 3-phase translation of AGS-3 (+strand): . . . . . . 37480 CTAATTATACAATTGCAGCGAAATAGGCCAGCGAATTATACAATTTAGGCCAGCGAAGTA L I I Q L Q R N R P A N Y T I - A S E V - L Y N C S E I G Q R I I Q F R P A K Y N Y T I A A K - A S E L Y N L G Q R S . . . . . . 37540 TACACTTTTATATGTATAGCGAATTATACAATTTTTATGTTTGCTATGGAGCGCAATTAT Y T F I C I A N Y T I F M F A M E R N Y T L L Y V - R I I Q F L C L L W S A I M I H F Y M Y S E L Y N F Y V C Y G A Q L . . . . . . 37600 GCAAAGTTTGCTATATTATACAAATATGATTTTTTTGTTTGCTATATGTGAAAGTTGCCC A K F A I L Y K Y D F F V C Y M - K L P Q S L L Y Y T N M I F L F A I C E S C P C K V C Y I I Q I - F F C L L Y V K V A . 37660 T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 37660 AGGGCAACTTTCACATATAGCAAACAAAAAAATCATATTTGTATAATATAGCAAACTTTG R A T F T Y S K Q K N H I C I I - Q T L G Q L S H I A N K K I I F V - Y S K L C G N F H I - Q T K K S Y L Y N I A N F . . . . . . 37600 CATAATTGCGCTCCATAGCAAACATAAAAATTGTATAATTCGCTATACATATAAAAGTGT H N C A P - Q T - K L Y N S L Y I - K C I I A L H S K H K N C I I R Y T Y K S V A - L R S I A N I K I V - F A I H I K V . . . . . . 37540 ATACTTCGCTGGCCTAAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTA I L R W P K L Y N S L A Y F A A I V - L Y F A G L N C I I R W P I S L Q L Y N - Y T S L A - I V - F A G L F R C N C I I . 37480 G Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (- strand): 80685 78421 AGS-1 (80685 80658,78824 78781,78644 78421) SCR (e 0.750 d 0.000 a 0.000,e 0.705 d 0.000 a 0.000,e 0.874) Exon 1 80685 80658 ( 28 n); score: 0.750 Intron 1 80657 78825 (1833 n); Pd: 0.000 Pa: 0.000 Exon 2 78824 78781 ( 44 n); score: 0.705 Intron 2 78780 78645 ( 136 n); Pd: 0.000 Pa: 0.000 Exon 3 78644 78421 ( 224 n); score: 0.874 PGS (80685 80658,78824 78781,78644 78421) SGN-E543331+ PGS (78642 78421) SGN-E271645- PGS (78538 78421) SGN-E544264+ PGS (78642 78422) SGN-E370622- 3-phase translation of AGS-1 (-strand): . . . : . . . 80685 TTTCATAATTACTTTTTTTTTTTAATAA : AAATGTTCCTTCTAAATTAATCCTTTTTCTAG F H N Y F F F L I : K M F L L N - S F F - F I I T F F F - - : K C S F - I N P F S S S - L L F F F N K : N V P S K L I L F L . . : . . . . 78792 TAGGAAAAGATT : CCCATGTATTCTGAGTGAATTGTTTGAGGTTGTTTTCCTCTGTATTTT - E K I : P M Y S E - I V - G C F P L Y F R K R F : P C I L S E L F E V V F L C I L V G K D : S H V F - V N C L R L F S S V F . . . . . . 78596 GTACTCTCATATTTATAGTGAATTGTTCATCTCTTTGTGGACGTACGTCGATTGACCGAA V L S Y L - - I V H L F V D V R R L T E Y S H I Y S E L F I S L W T Y V D - P N C T L I F I V N C S S L C G R T S I D R . . . . . . 78536 CCACATTAAATTTTTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGCCTTT P H - I F V S F G I F L V V F L L V A F H I K F L C L L V Y F S L S S Y S W P F T T L N F C V F W Y I S R C L L T R G L . . . . . . 78476 CGAGATTCGCTTTGCTAGCTTCCGCGTTTACATCTACTTATTTTCGGTCCTAACAA R D S L C - L P R L H L L I F G P N E I R F A S F R V Y I Y L F S V L T S R F A L L A S A F T S T Y F R S - Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-9_AGS-1_PPS_1 (78630 78424) (frame '0'; 204 bp, 68 residues) 1 VNCLRLFSSV FCTLIFIVNC SSLCGRTSID RTTLNFCVFW YISRCLLTRG LSRFALLASA 61 FTSTYFRS- AGS-2 (78824 78422) SCR (e 0.901) Exon 1 78824 78422 ( 403 n); score: 0.901 PGS (78824 78422) SGN-E206285- PGS (78808 78422) SGN-E211090+ PGS (78688 78422) SGN-E206496- PGS (78686 78422) SGN-E207598- PGS (78672 78422) SGN-E389613- PGS (78808 78445) SGN-E205772+ PGS (78808 78477) SGN-E205773+ PGS (78824 78513) SGN-E243194- 3-phase translation of AGS-2 (-strand): . . . . . . 78824 AAATGTTCCTTCTAAATTAATCCTTTTTCTAGTAGGAAAAGATTTAGAACTCTATAAATA K C S F - I N P F S S R K R F R T L - I N V P S K L I L F L V G K D L E L Y K - M F L L N - S F F - - E K I - N S I N . . . . . . 78764 GAGAAATGTTCCTTCTAACTTAATCAACATTCACAATGTAGTCTTAAGGGCTTTGAGAGT E K C S F - L N Q H S Q C S L K G F E S R N V P S N L I N I H N V V L R A L R V R E M F L L T - S T F T M - S - G L - E . . . . . . 78704 TTTGATTAAGGGGAGAATTTGTGGGTCACAAGCTTGATACGTTATCACTTGCGTGAACCT F D - G E N L W V T S L I R Y H L R E P L I K G R I C G S Q A - Y V I T C V N L F - L R G E F V G H K L D T L S L A - T . . . . . . 78644 CCCATGTATTCTGAGTGAATTGTTTGAGGTTGTTTTCCTCTGTATTTTGTACTCTCATAT P M Y S E - I V - G C F P L Y F V L S Y P C I L S E L F E V V F L C I L Y S H I S H V F - V N C L R L F S S V F C T L I . . . . . . 78584 TTATAGTGAATTGTTCATCTCTTTGTGGACGTACGTCGATTGACCGAACCACATTAAATT L - - I V H L F V D V R R L T E P H - I Y S E L F I S L W T Y V D - P N H I K F F I V N C S S L C G R T S I D R T T L N . . . . . . 78524 TTTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGGCCTTTCGAGATTCGCTT F V S F G I F L V V F L L V A F R D S L L C L L V Y F S L S S Y S W P F E I R F F C V F W Y I S R C L L T R G L S R F A . . . . . 78464 TGCTAGCTTCCGCGTTTACATCTACTTATTTTCGGTCCTAACA C - L P R L H L L I F G P N A S F R V Y I Y L F S V L T L L A S A F T S T Y F R S - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-9_AGS-2_PPS_1 (78630 78424) (frame '0'; 204 bp, 68 residues) 1 VNCLRLFSSV FCTLIFIVNC SSLCGRTSID RTTLNFCVFW YISRCLLTRG LSRFALLASA 61 FTSTYFRS- 3-phase translation of AGS-2 (+strand): . . . . . . 78422 TGTTAGGACCGAAAATAAGTAGATGTAAACGCGGAAGCTAGCAAAGCGAATCTCGAAAGG C - D R K - V D V N A E A S K A N L E R V R T E N K - M - T R K L A K R I S K G L G P K I S R C K R G S - Q S E S R K . . . . . . 78482 CCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACAAAAATTTAATGTGGTTCGG P R V R R Q R E I Y Q K T Q K F N V V R H E - E D N E K Y T K R H K N L M W F G A T S K K T T R N I P K D T K I - C G S . . . . . . 78542 TCAATCGACGTACGTCCACAAAGAGATGAACAATTCACTATAAATATGAGAGTACAAAAT S I D V R P Q R D E Q F T I N M R V Q N Q S T Y V H K E M N N S L - I - E Y K I V N R R T S T K R - T I H Y K Y E S T K . . . . . . 78602 ACAGAGGAAAACAACCTCAAACAATTCACTCAGAATACATGGGAGGTTCACGCAAGTGAT T E E N N L K Q F T Q N T W E V H A S D Q R K T T S N N S L R I H G R F T Q V I Y R G K Q P Q T I H S E Y M G G S R K - . . . . . . 78662 AACGTATCAAGCTTGTGACCCACAAATTCTCCCCTTAATCAAAACTCTCAAAGCCCTTAA N V S S L - P T N S P L N Q N S Q S P - T Y Q A C D P Q I L P L I K T L K A L K - R I K L V T H K F S P - S K L S K P L . . . . . . 78722 GACTACATTGTGAATGTTGATTAAGTTAGAAGGAACATTTCTCTATTTATAGAGTTCTAA D Y I V N V D - V R R N I S L F I E F - T T L - M L I K L E G T F L Y L - S S K R L H C E C - L S - K E H F S I Y R V L . . . . . 78782 ATCTTTTCCTACTAGAAAAAGGATTAATTTAGAAGGAACATTT I F S Y - K K D - F R R N I S F P T R K R I N L E G T F N L F L L E K G L I - K E H Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-9_AGS-2_PPS_1 (78440 78679) (frame '1'; 237 bp, 79 residues) 1 VDVNAEASKA NLERPRVRRQ REIYQKTQKF NVVRSIDVRP QRDEQFTINM RVQNTEENNL 61 KQFTQNTWEV HASDNVSSL- PGL 10 (- strand): 90896 84637 AGS-1 (88712 88702,88627 88493,88226 88150,87995 87751,87602 87546,87470 87302,86088 86031,85959 85874,85757 85701,84998 84637) SCR (e 1.000 d 0.942 a 0.966,e 0.993 d 0.942 a 0.999,e 1.000 d 0.990 a 0.998,e 1.000 d 0.979 a 0.904,e 1.000 d 0.982 a 0.996,e 1.000 d 0.907 a 0.976,e 1.000 d 0.985 a 0.114,e 1.000 d 0.916 a 0.986,e 1.000 d 0.977 a 0.997,e 1.000) Exon 1 88712 88702 ( 11 n); score: 1.000 Intron 1 88701 88628 ( 74 n); Pd: 0.942 Pa: 0.966 Exon 2 88627 88493 ( 135 n); score: 0.993 Intron 2 88492 88227 ( 266 n); Pd: 0.942 Pa: 0.999 Exon 3 88226 88150 ( 77 n); score: 1.000 Intron 3 88149 87996 ( 154 n); Pd: 0.990 Pa: 0.998 Exon 4 87995 87751 ( 245 n); score: 1.000 Intron 4 87750 87603 ( 148 n); Pd: 0.979 Pa: 0.904 Exon 5 87602 87546 ( 57 n); score: 1.000 Intron 5 87545 87471 ( 75 n); Pd: 0.982 Pa: 0.996 Exon 6 87470 87302 ( 169 n); score: 1.000 Intron 6 87301 86089 (1213 n); Pd: 0.907 Pa: 0.976 Exon 7 86088 86031 ( 58 n); score: 1.000 Intron 7 86030 85960 ( 71 n); Pd: 0.985 Pa: 0.114 Exon 8 85959 85874 ( 86 n); score: 1.000 Intron 8 85873 85758 ( 116 n); Pd: 0.916 Pa: 0.986 Exon 9 85757 85701 ( 57 n); score: 1.000 Intron 9 85700 84999 ( 702 n); Pd: 0.977 Pa: 0.997 Exon 10 84998 84637 ( 362 n); score: 1.000 PGS (86044 86031,85959 85874,85757 85701,84998 84637) SGN-E349851- PGS (85883 85874,85757 85701,84998 84637) SGN-E353220- PGS (88199 88150,87995 87751,87602 87546,87470 87302,86088 86031,85959 85937) SGN-E247017+ PGS (88712 88702,88627 88493,88226 88150,87995 87801) SGN-E286181+ 3-phase translation of AGS-1 (-strand): . . : . . . . 88712 TGAAATTTCTG : AGATTCTACCATCGGAGGACATTGCAGCTCTTGTGTACTTGTGGAACCC - N F - : D S T I G G H C S S C V L V E P E I S : E I L P S E D I A A L V Y L W N P K F L : R F Y H R R T L Q L L C T C G T . . . . . . 88578 TTTAACCATAGTCACATGTGTGGGTTTCAATACAACCCCTGTGGAAAATCTTTTTATTAT F N H S H M C G F Q Y N P C G K S F Y Y L T I V T C V G F N T T P V E N L F I I L - P - S H V W V S I Q P L W K I F L L . . . : . . . 88518 CTTGTCACTTTATGGAGCCTGCATCC : GAGTAGCCCCATTGGCAGCTTTTGGGTGGGTTGT L V T L W S L H P : S S P I G S F W V G C L S L Y G A C I : R V A P L A A F G W V V S C H F M E P A S : E - P H W Q L L G G L . . . . . : . 88192 AGCATCTCATTTGTCTCTCTATCCGACAATCCTGATTATACCT : GTAATCTTGCTATTAGG S I S F V S L S D N P D Y T : C N L A I R A S H L S L Y P T I L I I P : V I L L L G - H L I C L S I R Q S - L Y L : - S C Y - . . . . . . 87978 TAATGGTCCAGATGCAACCCCAAGGAAATTGTTCCTGATGTATAAGAAAGATGAAGCTGA - W S R C N P K E I V P D V - E R - S - N G P D A T P R K L F L M Y K K D E A D V M V Q M Q P Q G N C S - C I R K M K L . . . . . . 87918 CAACTCAAGTAAAGGCCGGGTGGTAAATGGCTTATCAGAACAAAAAAACTTCTCATGGAG Q L K - R P G G K W L I R T K K L L M E N S S K G R V V N G L S E Q K N F S W R T T Q V K A G W - M A Y Q N K K T S H G . . . . . . 87858 ACCAGTTGGACTCTTCTTTGTCTGGGTTTTTATTTGGACCTTGTATACATTGGTTTTGTG T S W T L L C L G F Y L D L V Y I G F V P V G L F F V W V F I W T L Y T L V L C D Q L D S S L S G F L F G P C I H W F C . . . . . : . 87798 TGGCATCTTCATGAGAAACTATGGTGGCATTTCAGAAATGTTTAACAG : GACCTATGGGTT W H L H E K L W W H F R N V - Q : D L W V G I F M R N Y G G I S E M F N R : T Y G F V A S S - E T M V A F Q K C L T : G P M G . . . . . : . 87590 TATTCTTACTGTCAAAGATTTGTCTCCAAACATTGGTGTCTTGTG : GTACTTCTTTGCCGA Y S Y C Q R F V S K H W C L V : V L L C R I L T V K D L S P N I G V L W : Y F F A E L F L L S K I C L Q T L V S C : G T S L P . . . . . . 87455 GGTCTTTGAATTTTTCAGAGACTTCTTTCTGATTGTTTTTCATGTGAACATCCTTTTCAT G L - I F Q R L L S D C F S C E H P F H V F E F F R D F F L I V F H V N I L F M R S L N F S E T S F - L F F M - T S F S . . . . . . 87395 GATACTGCCACTAGCCATAAGGCTAAAGCACCGGCCGTGTTTCTTGGCTTTTGTTTACAT D T A T S H K A K A P A V F L G F C L H I L P L A I R L K H R P C F L A F V Y M - Y C H - P - G - S T G R V S W L L F T . . . . : . . 87335 GGCAATCTGTTCAATACTTAAGCCCTATCCTTCA : GTTGGGGACTCAGCTCTATACTTGGC G N L F N T - A L S F : S W G L S S I L G A I C S I L K P Y P S : V G D S A L Y L A W Q S V Q Y L S P I L Q : L G T Q L Y T W . . . . : . . 86062 TTTGTTAGCTTTGTTTTTCAATGAGTTAGCAG : AAATGCAGTTTTCCTTCTTTCTCTTCTG F V S F V F Q - V S R : N A V F L L S L L L L A L F F N E L A : E M Q F S F F L F C L C - L C F S M S - Q : K C S F P S F S S . . . . . . : 85931 TGGATTTGTTGGAGTTTCCCTTCTTAGTCCTGTGATGCACAACTTGTGGATATGGAGG : GG W I C W S F P S - S C D A Q L V D M E : G G F V G V S L L S P V M H N L W I W R : G V D L L E F P F L V L - C T T C G Y G G : . . . . . . : 85755 TACTGGCAATGCCAACTTTTACTTTGCAACAGGAATGGCTTATGCTTGCTTCCAG : ATTAT Y W Q C Q L L L C N R N G L C L L P : D Y T G N A N F Y F A T G M A Y A C F Q : I I V L A M P T F T L Q Q E W L M L A S R : L . . . . . . 84993 ATTGGTTGTTGAGAGTGTGAGTGCTATGTTGAACCATGACAGAAAGATCAGAAAGTTGGT I G C - E C E C Y V E P - Q K D Q K V G L V V E S V S A M L N H D R K I R K L V Y W L L R V - V L C - T M T E R S E S W . . . . . . 84933 TGCAACTACATAAGCTTGAGATCTAAACATCATATACGAGTTCAATCCGATTATTCATGA C N Y I S L R S K H H I R V Q S D Y S - A T T - A - D L N I I Y E F N P I I H D L Q L H K L E I - T S Y T S S I R L F M . . . . . . 84873 TCATTTTTTTTGCCAGACAGATCCATATTGCCGTTGGTTGCAGTTTCTTTAGATCAACTC S F F L P D R S I L P L V A V S L D Q L H F F C Q T D P Y C R W L Q F L - I N S I I F F A R Q I H I A V G C S F F R S T . . . . . . 84813 CATTGCAACTTAACTGGGTCTGAGTTTGCTTCCATGATATAGGGTTTCTACTTGTGGCTT H C N L T G S E F A S M I - G F Y L W L I A T - L G L S L L P - Y R V S T C G F P L Q L N W V - V C F H D I G F L L V A . . . . . . 84753 TATGGAATGGCCATTTAACGGATGTGTCGTAACACGTGATAACTCATACCAAATCATTGA Y G M A I - R M C R N T - - L I P N H - M E W P F N G C V V T R D N S Y Q I I E L W N G H L T D V S - H V I T H T K S L . . . . . . 84693 ATTCTGGCTTTTACACGCAAGTTGTATGCTAATGTAATCTCTCTCTGATCGATTATA I L A F T R K L Y A N V I S L - S I I F W L L H A S C M L M - S L S D R L N S G F Y T Q V V C - C N L S L I D Y Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-10_AGS-1_PPS_1 (88711 88702,88627 88493,88226 88150,87995 87751,87602 87546,87470 87302,86088 86031,85959 85874,85757 85701,84998 84921) (frame '2'; 969 bp, 323 residues) 1 EISEILPSED IAALVYLWNP LTIVTCVGFN TTPVENLFII LSLYGACIRV APLAAFGWVV 61 ASHLSLYPTI LIIPVILLLG NGPDATPRKL FLMYKKDEAD NSSKGRVVNG LSEQKNFSWR 121 PVGLFFVWVF IWTLYTLVLC GIFMRNYGGI SEMFNRTYGF ILTVKDLSPN IGVLWYFFAE 181 VFEFFRDFFL IVFHVNILFM ILPLAIRLKH RPCFLAFVYM AICSILKPYP SVGDSALYLA 241 LLALFFNELA EMQFSFFLFC GFVGVSLLSP VMHNLWIWRG TGNANFYFAT GMAYACFQII 301 LVVESVSAML NHDRKIRKLV ATT- AGS-2 (90896 90655,90555 90508,90152 90092,89990 89958,88806 88702,88627 88466,88226 88169) SCR (e 1.000 d 0.378 a 0.978,e 1.000 d 0.997 a 0.705,e 1.000 d 0.920 a 0.888,e 1.000 d 0.998 a 0.984,e 1.000 d 0.942 a 0.966,e 1.000 d 0.547 a 0.999,e 1.000) Exon 1 90896 90655 ( 242 n); score: 1.000 Intron 1 90654 90556 ( 99 n); Pd: 0.378 Pa: 0.978 Exon 2 90555 90508 ( 48 n); score: 1.000 Intron 2 90507 90153 ( 355 n); Pd: 0.997 Pa: 0.705 Exon 3 90152 90092 ( 61 n); score: 1.000 Intron 3 90091 89991 ( 101 n); Pd: 0.920 Pa: 0.888 Exon 4 89990 89958 ( 33 n); score: 1.000 Intron 4 89957 88807 (1151 n); Pd: 0.998 Pa: 0.984 Exon 5 88806 88702 ( 105 n); score: 1.000 Intron 5 88701 88628 ( 74 n); Pd: 0.942 Pa: 0.966 Exon 6 88627 88466 ( 162 n); score: 1.000 Intron 6 88465 88227 ( 239 n); Pd: 0.547 Pa: 0.999 Exon 7 88226 88169 ( 58 n); score: 1.000 PGS (90896 90655,90555 90508,90152 90092,89990 89958,88806 88702,88627 88466,88226 88169) SGN-E332311+ 3-phase translation of AGS-2 (-strand): . . . . . . 90896 CGGTTCGAAATTCGATCGCTGCAACGCTGCTACCACAGCCATTGGAGCTGGATCTGGAAG R F E I R S L Q R C Y H S H W S W I W K G S K F D R C N A A T T A I G A G S G S V R N S I A A T L L P Q P L E L D L E . . . . . . 90836 CTCTGGTGCGGTAGCAATAATGAAAGAGGAGGAGGAGAAGAAGAATATGAAAACGAAGCC L W C G S N N E R G G G E E E Y E N E A S G A V A I M K E E E E K K N M K T K P A L V R - Q - - K R R R R R R I - K R S . . . . . . 90776 ACACTTTTGGAGATGGGCAGTAGCATCAATGATCTTCAGATTAGTTCTCATTTACTTTCC T L L E M G S S I N D L Q I S S H L L S H F W R W A V A S M I F R L V L I Y F P H T F G D G Q - H Q - S S D - F S F T F . . . . . . 90716 CAAAAACCTTAACTTAGCTACTCGTCCAGAAGTTTCCACTCCGGTCACCAGTCTACGCCG Q K P - L S Y S S R S F H S G H Q S T P K N L N L A T R P E V S T P V T S L R R P K T L T - L L V Q K F P L R S P V Y A . : . . . . : . 90656 AC : TGGCAGAAGGTTACTGGTTAACGCAGTCATCGATGTCTCCGTATGCCG : GTTCTATGTA T : G R R L L V N A V I D V S V C R : F Y V : L A E G Y W L T Q S S M S P Y A : G S M Y D : W Q K V T G - R S H R C L R M P : V L C . . . . . . : 90142 TCATGGTTCTCCACTTCTGCTCTCGGTTCTCGGTCCGCTTACAATGAAGAA : AATTGAAGG S W F S T S A L G S R S A Y N E E : N - R H G S P L L L S V L G P L T M K K : I E G I M V L H F C S R F S V R L Q - R : K L K . . . : . . . 89981 ACAGCCTTATCATCTTCTATGCAG : ATTTCATCTCTGCCATGCTAATCCGGGCAACTGGCC T A L S S S M Q : I S S L P C - S G Q L A Q P Y H L L C R : F H L C H A N P G N W P D S L I I F Y A : D F I S A M L I R A T G . . . . . . 88770 TTAAACTTCGCATGGCATATTGTGAGAGATTAAAATCGCTGGGTTTGGGGAAGCTCTTTG L N F A W H I V R D - N R W V W G S S L - T S H G I L - E I K I A G F G E A L - L K L R M A Y C E R L K S L G L G K L F . : . . . . . 88710 AAATTTCTG : AGATTCTACCATCGGAGGACATTGCAGCTCTTGTGTACTTGTGGAACCCTT K F L : R F Y H R R T L Q L L C T C G T L N F - : D S T I G G H C S S C V L V E P F E I S : E I L P S E D I A A L V Y L W N P . . . . . . 88576 TAACCATAGTCACATGTGTGGGTTTCAATACAACCCCTGTGGAAAATCTTTTTATTATCT - P - S H V W V S I Q P L W K I F L L S N H S H M C G F Q Y N P C G K S F Y Y L L T I V T C V G F N T T P V E N L F I I . . . . . . : 88516 TGTCACTTTATGGAGCCTGCATCCGTAAGAAGTCAATAATCCTTTTTATAT : GAGTAGCCC C H F M E P A S V R S Q - S F L Y : E - P V T L W S L H P - E V N N P F Y M : S S P L S L Y G A C I R K K S I I L F I : - V A . . . . . 88217 CATTGGCAGCTTTTGGGTGGGTTGTAGCATCTCATTTGTCTCTCTATCC H W Q L L G G L - H L I C L S I I G S F W V G C S I S F V S L S P L A A F G W V V A S H L S L Y Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-10_AGS-2_PPS_1 (90895 90655,90555 90508,90152 90092,89990 89958,88806 88767) (frame '2'; 420 bp, 140 residues) 1 GSKFDRCNAA TTAIGAGSGS SGAVAIMKEE EEKKNMKTKP HFWRWAVASM IFRLVLIYFP 61 KNLNLATRPE VSTPVTSLRR LAEGYWLTQS SMSPYAGSMY HGSPLLLSVL GPLTMKKIEG 121 QPYHLLCRFH LCHANPGNWP - PGL 11 (+ strand): 96309 96992 AGS-1 (96309 96320,96483 96992) SCR (e 1.000 d 0.963 a 1.000,e 1.000) Exon 1 96309 96320 ( 12 n); score: 1.000 Intron 1 96321 96482 ( 162 n); Pd: 0.963 Pa: 1.000 Exon 2 96483 96992 ( 510 n); score: 1.000 PGS (96309 96320,96483 96992) SGN-E299249+ 3-phase translation of AGS-1 (+strand): . . : . . . . 96309 GGACATCAATAG : AGTACATCCAGCACCTGTTTCTGCTGCTCCACACGAGGATGATATGGA G H Q - : S T S S T C F C C S T R G - Y G D I N R : V H P A P V S A A P H E D D M E T S I : E Y I Q H L F L L L H T R M I W . . . . . . 96531 AATAGATGATCCGATTACAGAGGAATTTCACAGACCTCCCTTTTCAGTTTTTTCCTCTTC N R - S D Y R G I S Q T S L F S F F L F I D D P I T E E F H R P P F S V F S S S K - M I R L Q R N F T D L P F Q F F P L . . . . . . 96591 TAGAACTCCAAGTGCTTTCTCCCTTCTTGATCCTAGTTTCACTCGAAGTATGTTTGACAC - N S K C F L P S - S - F H S K Y V - H R T P S A F S L L D P S F T R S M F D T L E L Q V L S P F L I L V S L E V C L T . . . . . . 96651 CGATCTTACTAGCCGTGCTCCGTTTGTTTCACATCCAAGACAAGTAAGAGAGATCCCTAT R S Y - P C S V C F T S K T S K R D P Y D L T S R A P F V S H P R Q V R E I P I P I L L A V L R L F H I Q D K - E R S L . . . . . . 96711 TGAGGTGAAGGATGGGGATGGACAATCTGGTCATTCTAGAAATGCTCCTGTTATTGAGGA - G E G W G W T I W S F - K C S C Y - G E V K D G D G Q S G H S R N A P V I E D L R - R M G M D N L V I L E M L L L L R . . . . . . 96771 TGTTACAGACGCTGACCAGACTCAAGGCCCAGAAACTCGTGGGACTGTCATAATTGAGGA C Y R R - P D S R P R N S W D C H N - G V T D A D Q T Q G P E T R G T V I I E E M L Q T L T R L K A Q K L V G L S - L R . . . . . . 96831 GGACGATGACGATGATGAAGTAATTCCAGGTCCCCTGGCAACACGTGCTGTCAGGCGTGA G R - R - - S N S R S P G N T C C Q A - D D D D D E V I P G P L A T R A V R R D R T M T M M K - F Q V P W Q H V L S G V . . . . . . 96891 TAGAACAAATGATGATATCTTTGGTGGGGACTCTACAGCAGTATTCTCAGGACCAAGTGC - N K - - Y L W W G L Y S S I L R T K C R T N D D I F G G D S T A V F S G P S A I E Q M M I S L V G T L Q Q Y S Q D Q V . . . . . 96951 TCCTGGTGGTGATGTCTTACCAGACTATGCCAATGATATTGA S W W - C L T R L C Q - Y - P G G D V L P D Y A N D I L L V V M S Y Q T M P M I L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-11_AGS-1_PPS_1 (96310 96320,96483 96990) (frame '2'; 519 bp, 173 residues) 1 DINRVHPAPV SAAPHEDDME IDDPITEEFH RPPFSVFSSS RTPSAFSLLD PSFTRSMFDT 61 DLTSRAPFVS HPRQVREIPI EVKDGDGQSG HSRNAPVIED VTDADQTQGP ETRGTVIIEE 121 DDDDDEVIPG PLATRAVRRD RTNDDIFGGD STAVFSGPSA PGGDVLPDYA NDI PGL 12 (+ strand): 97638 100009 AGS-1 (97638 97828,97932 98147,98224 98355,98784 98927,99014 99070,99570 100009) SCR (e 1.000 d 0.996 a 0.911,e 1.000 d 0.994 a 0.998,e 1.000 d 0.000 a 0.281,e 1.000 d 0.962 a 0.994,e 1.000 d 0.974 a 0.991,e 1.000) Exon 1 97638 97828 ( 191 n); score: 1.000 Intron 1 97829 97931 ( 103 n); Pd: 0.996 Pa: 0.911 Exon 2 97932 98147 ( 216 n); score: 1.000 Intron 2 98148 98223 ( 76 n); Pd: 0.994 Pa: 0.998 Exon 3 98224 98355 ( 132 n); score: 1.000 Intron 3 98356 98783 ( 428 n); Pd: 0.000 Pa: 0.281 Exon 4 98784 98927 ( 144 n); score: 1.000 Intron 4 98928 99013 ( 86 n); Pd: 0.962 Pa: 0.994 Exon 5 99014 99070 ( 57 n); score: 1.000 Intron 5 99071 99569 ( 499 n); Pd: 0.974 Pa: 0.991 Exon 6 99570 100009 ( 440 n); score: 1.000 PGS (97638 97828,97932 98147,98224 98355,98784 98927,99014 99070,99570 99642) SGN-E543384+ PGS (97639 97828,97932 98147,98224 98355,98784 98882) SGN-E304084+ PGS (97948 98147,98224 98355,98784 98927,99014 99070,99570 99900) SGN-E543383- PGS (99677 100009) SGN-E215631- PGS (99750 100009) SGN-E215915- 3-phase translation of AGS-1 (+strand): . . . . . . 97638 GGAGTTCATCCATCCAAGATGAGGCTGAAGATTTAGAAGAGGAACCACTGGTTTGGCGCA G V H P S K M R L K I - K R N H W F G A E F I H P R - G - R F R R G T T G L A Q S S S I Q D E A E D L E E E P L V W R . . . . . . 97698 GAAGAAAACCTATATCTTCAGGTTCAGAAACAGCTCAGGATGTCGAAGAACGTGTTGTTA E E N L Y L Q V Q K Q L R M S K N V L L K K T Y I F R F R N S S G C R R T C C - R R K P I S S G S E T A Q D V E E R V V . . . . . . 97758 GCCCATTATCAAGTCCTCGACAGAATCTTAATCACTCCCCAAGAAACGGTGCTGACTTCC A H Y Q V L D R I L I T P Q E T V L T S P I I K S S T E S - S L P K K R C - L P S P L S S P R Q N L N H S P R N G A D F . . : . . . . 97818 AGTCTGATGAG : TGGGGGGGCATGTCATCCCTGGAGCATGATGAAGCTGTCATGCTTGAAG S L M S : G G A C H P W S M M K L S C L K V - - : V G G H V I P G A - - S C H A - S Q S D E : W G G M S S L E H D E A V M L E . . . . . . 97981 CTGCAATATTTGGTGGAATACCTGAGGGTACTGGATACCGATTGCCATCTGCACCTCGTC L Q Y L V E Y L R V L D T D C H L H L V C N I W W N T - G Y W I P I A I C T S S A A I F G G I P E G T G Y R L P S A P R . . . . . . 98041 AGCCTATTCAGAATGGTGCTGATGGACCTATGGGCCCCTATCAATGGCGCATGCCTCGTG S L F R M V L M D L W A P I N G A C L V A Y S E W C - W T Y G P L S M A H A S C Q P I Q N G A D G P M G P Y Q W R M P R . . . . . : . 98101 CCCCATCTCCGTCTCTTGTGGCACAGCGTTTACTTCGGGAACAGCAG : GATGATGAATATC P H L R L L W H S V Y F G N S R : M M N I P I S V S C G T A F T S G T A : G - - I S A P S P S L V A Q R L L R E Q Q : D D E Y . . . . . . 98237 ATGCTGCATTGCAAGCTGATAGAGAAAAGGAATTGAAGGCGAAGCAAGAAGCTGAAGCTG M L H C K L I E K R N - R R S K K L K L C C I A S - - R K G I E G E A R S - S C H A A L Q A D R E K E L K A K Q E A E A . . . . . . : 98297 CACTTGAAGAGAAGAGACTGGAGGAGGAGGAATTACGAAGGAAAGCAGAGGAGGAAAAG : G H L K R R D W R R R N Y E G K Q R R K R : T - R E E T G G G G I T K E S R G G K : G A L E E K R L E E E E L R R K A E E E K : . . . . . . 98785 AAATGGAGAGACAACTAGCAGCAAAAGAAGCTTCCCTTCCTCAGGAGCCCACAGCAGATA K W R D N - Q Q K K L P F L R S P Q Q I N G E T T S S K R S F P S S G A H S R - E M E R Q L A A K E A S L P Q E P T A D . . . . . . 98845 ATGAGAATGCTGTGAATCTCGTTGTGCGTATGCCTGATGGCAGCCGCAGAGGCCGGCGCT M R M L - I S L C V C L M A A A E A G A - E C C E S R C A Y A - W Q P Q R P A L N E N A V N L V V R M P D G S R R G R R . . . : . . . 98905 TTCTCAAATCTGATAGATTACAG : TCCCTTTTCGATTACATTGATATCGGCAGAGTGATCA F S N L I D Y S : P F S I T L I S A E - S S Q I - - I T : V P F R L H - Y R Q S D Q F L K S D R L Q : S L F D Y I D I G R V I . . : . . . . 99051 AGCCCGGCACATATAGATTG : GTAAGACCTTACCCAAGGCGTGCTTTCAGTGACGGAGAGA S P A H I D W : - D L T Q G V L S V T E R A R H I - I : G K T L P K A C F Q - R R E K P G T Y R L : V R P Y P R R A F S D G E . . . . . . 99610 GTACTGTGTCTCTGGACGAACTGGGGTTGACCAGCAAACAAGAAGCCTTGTTTCTGGAGT V L C L W T N W G - P A N K K P C F W S Y C V S G R T G V D Q Q T R S L V S G V S T V S L D E L G L T S K Q E A L F L E . . . . . . 99670 CGATATAAGTCATTCACGTTGTAAAGTAGTTTCAGATATTTCCTCAAAAACATAGATTTA R Y K S F T L - S S F R Y F L K N I D L D I S H S R C K V V S D I S S K T - I Y S I - V I H V V K - F Q I F P Q K H R F . . . . . . 99730 TACATACATACGTGAAAATGGTGTTCATGGGTTGGTTTATTTTGGTTGGTAAACATCGCT Y I H T - K W C S W V G L F W L V N I A T Y I R E N G V H G L V Y F G W - T S L I H T Y V K M V F M G W F I L V G K H R . . . . . . 99790 GCATATTTATCTGGTCGCTAGGGAGAATGCCATTGATGATCATGGTGGGTGAGGAGTATT A Y L S G R - G E C H - - S W W V R S I H I Y L V A R E N A I D D H G G - G V F C I F I W S L G R M P L M I M V G E E Y . . . . . . 99850 CCAACGATTTATGGTGCTTTATATGTGGAATTAAATCATTTGCTTTTTGAATTGTCCACA P T I Y G A L Y V E L N H L L F E L S T Q R F M V L Y M W N - I I C F L N C P Q S N D L W C F I C G I K S F A F - I V H . . . . . . 99910 AAAATAGTATATAGCTTGTCAAATGGTTTATGTGGCATAAGCTGGAACTTAATGCGCATT K I V Y S L S N G L C G I S W N L M R I K - Y I A C Q M V Y V A - A G T - C A L K N S I - L V K W F M W H K L E L N A H . . . . 99970 ATGGACCGGCTTTAGAGAAATACGAGCATACTTCTTCTAG M D R L - R N T S I L L L W T G F R E I R A Y F F - Y G P A L E K Y E H T S S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-12_AGS-1_PPS_1 (97640 97828,97932 98147,98224 98355,98784 98927,99014 99070,99570 99677) (frame '0'; 843 bp, 281 residues) 1 SSSIQDEAED LEEEPLVWRR RKPISSGSET AQDVEERVVS PLSSPRQNLN HSPRNGADFQ 61 SDEWGGMSSL EHDEAVMLEA AIFGGIPEGT GYRLPSAPRQ PIQNGADGPM GPYQWRMPRA 121 PSPSLVAQRL LREQQDDEYH AALQADREKE LKAKQEAEAA LEEKRLEEEE LRRKAEEEKE 181 MERQLAAKEA SLPQEPTADN ENAVNLVVRM PDGSRRGRRF LKSDRLQSLF DYIDIGRVIK 241 PGTYRLVRPY PRRAFSDGES TVSLDELGLT SKQEALFLES I- >C08HBa0197J17.1+_PGL-12_AGS-1_PPS_2 (99699 99899) (frame '0'; 198 bp, 66 residues) 1 FQIFPQKHRF IHTYVKMVFM GWFILVGKHR CIFIWSLGRM PLMIMVGEEY SNDLWCFICG 61 IKSFAF- PGL 13 (+ strand): 102113 103356 AGS-1 (102113 103356) SCR (e 0.960) Exon 1 102113 103356 (1244 n); score: 0.960 PGS (102113 102593) SGN-E208613- PGS (102261 102669) SGN-E289962- PGS (102402 103075) SGN-E391540- PGS (102445 103026) SGN-E267707- PGS (102521 103074) SGN-E205808- PGS (102618 103070) SGN-E202657- PGS (102682 103356) SGN-E273497+ PGS (102682 103083) SGN-E273387+ 3-phase translation of AGS-1 (+strand): . . . . . . 102113 TAAATATTCTGCATCTGCGTAACCAATCAATTTTGTCTTGGATTCCTCGGAATAGAATAA - I F C I C V T N Q F C L G F L G I E - K Y S A S A - P I N F V L D S S E - N K N I L H L R N Q S I L S W I P R N R I . . . . . . 102173 GCCCGTAACTGTGGCCCTTCGAGGATATTCAATCATGTGTTCAACACCATTTCAATGTCC A R N C G P S R I F N H V F N T I S M S P V T V A L R G Y S I M C S T P F Q C P S P - L W P F E D I Q S C V Q H H F N V . . . . . . 102233 TTTTATCGGGGAGAAACTGAATCTTGCCAGTAAATTTACTGCAAAACAAATATCTAGTCA F Y R G E T E S C Q - I Y C K T N I - S F I G E K L N L A S K F T A K Q I S S Q L L S G R N - I L P V N L L Q N K Y L V . . . . . . 102293 AATATTGTTAGTAAGATGTACTAGTGCCCTGATTGCACCAAAATAGAGTTTCATCACCAA N I V S K M Y - C P D C T K I E F H H Q I L L V R C T S A L I A P K - S F I T K K Y C - - D V L V P - L H Q N R V S S P . . . . . . 102353 GAAACTCATCATCCTTCTTTTGAGATCAAACTGAATCATCATTTATGTTAAGTGATCTCA E T H H P S F E I K L N H H L C - V I S K L I I L L L R S N - I I I Y V K - S H R N S S S F F - D Q T E S S F M L S D L . . . . . . 102413 TAATCATTGGGGTACTCAATGAATGCGATTTATCCATATAAAATTGCATCAAAACTTTTC - S L G Y S M N A I Y P Y K I A S K L F N H W G T Q - M R F I H I K L H Q N F S I I I G V L N E C D L S I - N C I K T F . . . . . . 102473 AGTGTATGTGCACTGTTAGACAAATATTTCATTTGTCAAATTATCAATCTGTAGGTCAAG S V C A L L D K Y F I C Q I I N L - V K V Y V H C - T N I S F V K L S I C R S R Q C M C T V R Q I F H L S N Y Q S V G Q . . . . . . 102533 ACAAAATTTTGTCTTACCAAGACCTTTTCATAAAAATACAAGGACTATTAGGGTCATTCT T K F C L T K T F S - K Y K D Y - G H S Q N F V L P R P F H K N T R T I R V I L D K I L S Y Q D L F I K I Q G L L G S F . . . . . . 102593 TTTGTACTCTTTTTCTTCCTTGACTATTTCAATCCATATAAGGATTCTTGAAGCTTTATT F V L F F F L D Y F N P Y K D S - S F I L Y S F S S L T I S I H I R I L E A L L F C T L F L P - L F Q S I - G F L K L Y . . . . . . 102653 GGAAAAGTTTCTTTCAAACTCTTATATGCTTCAGACACCTCGATTGTTTCAAGGATTTTC G K V S F K L L Y A S D T S I V S R I F E K F L S N S Y M L Q T P R L F Q G F S W K S F F Q T L I C F R H L D C F K D F . . . . . . 102713 ATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTTT I - P S L S S - T L Q L F I Y M H S S F Y N L H C L A R H Y N Y S F T C I Q V F H I T F I V - L D I T I I H L H A F K F . . . . . . 102773 CATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAATATCTCCAA H M L P D Q N K P H C I H Q R R K Y L Q I C C Q I K T N L I A S T K G E N I S N S Y V A R S K Q T S L H P P K E K I S P . . . . . . 102833 TAATGTCAGGATTTTGCGATAAACTTTTATGCCCCAAGGCACAAATCGTATTTGATATCT - C Q D F A I N F Y A P R H K S Y L I S N V R I L R - T F M P Q G T N R I - Y L I M S G F C D K L L C P K A Q I V F D I . . . . . . 102893 TACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACAATATACCTTGATTTA Y G Y T I A - - F I C T P L T I Y L D L T V I L S H N N L F V P H - Q Y T L I Y L R L Y Y R I I I Y L Y P T D N I P - F . . . . . . 102953 TGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCA W T T S P K C H F S K - N K I Y L N C A G L P V Q N V T F L S E T K Y T - I V H M D Y Q S K M S L F - V K Q N I L E L C . . . . . . 103013 TTTTACTAGGTCAACCATTTATCTGTCCATACTATATGACAGATTTGAATTCAAGATCCT F Y - V N H L S V H T I - Q I - I Q D P F T R S T I Y L S I L Y D R F E F K I L I L L G Q P F I C P Y Y M T D L N S R S . . . . . . 103073 CGTCACAATTTATATCATTGAGCGCTACCTCGTATCAAAGATACCATCGACGGTTATTTG R H N L Y H - A L P R I K D T I D G Y L V T I Y I I E R Y L V S K I P S T V I - S S Q F I S L S A T S Y Q R Y H R R L F . . . . . . 103133 ATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTA I S I P T R H N L S R S L H F S L F Q V Y R F Q Q D I T Y R D L F I F H Y F R Y D I D S N K T - L I E I S S F F I I S G . . . . . . 103193 CCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTG P E P F S R F Y E V L C Q C A L L - H L L N L F Q D F M K C Y V N V L F Y S T C T - T F F K I L - S V M S M C S F I A L . . . . . . 103253 CCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTT P H Y H D H I D H L L L P S S R N F I F L I I M T I L I I C S F L L Q G I L Y L A S L S - P Y - S F A P S F F K E F Y I . . . . . 103313 GGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG G I D W S I T L P A Y H R L E S I G L L R F R R I I D S W N R L V Y Y A S G V S - T L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-13_AGS-1_PPS_1 (102492 102854) (frame '2'; 360 bp, 120 residues) 1 TNISFVKLSI CRSRQNFVLP RPFHKNTRTI RVILLYSFSS LTISIHIRIL EALLEKFLSN 61 SYMLQTPRLF QGFSYNLHCL ARHYNYSFTC IQVFICCQIK TNLIASTKGE NISNNVRILR 121 - >C08HBa0197J17.1+_PGL-13_AGS-1_PPS_2 (103134 103355) (frame '2'; 222 bp, 74 residues) 1 YRFQQDITYR DLFIFHYFRY LNLFQDFMKC YVNVLFYSTC LIIMTILIIC SFLLQGILYL 61 ESIGLLRFRR IIDS 3-phase translation of AGS-1 (-strand): . . . . . . 103356 CAGAGTCTATGATACGCCGGAAGCGTAATAGACCAATCGATTCCAAATATAAAATTCCTT Q S L - Y A G S V I D Q S I P N I K F L R V Y D T P E A - - T N R F Q I - N S L E S M I R R K R N R P I D S K Y K I P . . . . . . 103296 GAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAAGA E E G R S K - S I W S - - - G K C Y K R K K E G A N D Q Y G H D N E A S A I K E - R R K E Q M I N M V M I M R Q V L - K . . . . . . 103236 GCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAA A H - H N T S - N L E K G S G T - N N E H I D I T L H K I L K K V Q V P E I M K S T L T - H F I K S - K R F R Y L K - - . . . . . . 103176 AAATGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGATG K - R D L D K L C L V G I D I K - P S M N E E I S I S Y V L L E S I S N N R R W K M K R S R - V M S C W N R Y Q I T V D . . . . . . 103116 GTATCTTTGATACGAGGTAGCGCTCAATGATATAAATTGTGACGAGGATCTTGAATTCAA V S L I R G S A Q - Y K L - R G S - I Q Y L - Y E V A L N D I N C D E D L E F K G I F D T R - R S M I - I V T R I L N S . . . . . . 103056 ATCTGTCATATAGTATGGACAGATAAATGGTTGACCTAGTAAAATGCACAATTCAAGTAT I C H I V W T D K W L T - - N A Q F K Y S V I - Y G Q I N G - P S K M H N S S I N L S Y S M D R - M V D L V K C T I Q V . . . . . . 102996 ATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATATT I L F H L E K - H F G L V V H K S R Y I F C F T - K S D I L D W - S I N Q G I L Y F V S L R K V T F W T G S P - I K V Y . . . . . . 102936 GTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGAT V S G V Q I N Y Y A I V - P - D I K Y D S V G Y K - I I M R - Y N R K I S N T I C Q W G T N K L L C D S I T V R Y Q I R . . . . . . 102876 TTGTGCCTTGGGGCATAAAAGTTTATCGCAAAATCCTGACATTATTGGAGATATTTTCTC L C L G A - K F I A K S - H Y W R Y F L C A L G H K S L S Q N P D I I G D I F S F V P W G I K V Y R K I L T L L E I F S . . . . . . 102816 CTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATG L W W M Q - G L F - S G N I - K L E C M F G G C N E V C F D L A T Y E N L N A C P L V D A M R F V L I W Q H M K T - M H . . . . . . 102756 TAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACA - M N N C N V - L D N E G Y M K I L E T K - I I V M S S - T M K V I - K S L K Q V N E - L - C L A R Q - R L Y E N P - N . . . . . . 102696 ATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAA I E V S E A Y K S L K E T F P I K L Q E S R C L K H I R V - K K L F Q - S F K N N R G V - S I - E F E R N F S N K A S R . . . . . . 102636 TCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGAGTACAAAAGAATGACCCTAATAG S L Y G L K - S R K K K S T K E - P - - P Y M D - N S Q G R K R V Q K N D P N S I L I W I E I V K E E K E Y K R M T L I . . . . . . 102576 TCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTG S L Y F Y E K V L V R Q N F V L T Y R L P C I F M K R S W - D K I L S - P T D - V L V F L - K G L G K T K F C L D L Q I . . . . . . 102516 ATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCA I I - Q M K Y L S N S A H T L K S F D A - F D K - N I C L T V H I H - K V L M Q D N L T N E I F V - Q C T Y T E K F - C . . . . . . 102456 ATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTAACAT I L Y G - I A F I E Y P N D Y E I T - H F Y M D K S H S L S T P M I M R S L N I N F I W I N R I H - V P Q - L - D H L T . . . . . . 102396 AAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCT K - - F S L I S K E G - - V S W - - N S N D D S V - S Q K K D D E F L G D E T L - M M I Q F D L K R R M M S F L V M K L . . . . . . 102336 ATTTTGGTGCAATCAGGGCACTAGTACATCTTACTAACAATATTTGACTAGATATTTGTT I L V Q S G H - Y I L L T I F D - I F V F W C N Q G T S T S Y - Q Y L T R Y L F Y F G A I R A L V H L T N N I - L D I C . . . . . . 102276 TTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTG L Q - I Y W Q D S V S P R - K D I E M V C S K F T G K I Q F L P D K R T L K W C F A V N L L A R F S F S P I K G H - N G . . . . . . 102216 TTGAACACATGATTGAATATCCTCGAAGGGCCACAGTTACGGGCTTATTCTATTCCGAGG L N T - L N I L E G P Q L R A Y S I P R - T H D - I S S K G H S Y G L I L F R G V E H M I E Y P R R A T V T G L F Y S E . . . . . 102156 AATCCAAGACAAAATTGATTGGTTACGCAGATGCAGAATATTTA N P R Q N - L V T Q M Q N I I Q D K I D W L R R C R I F E S K T K L I G Y A D A E Y L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-13_AGS-1_PPS_1 (103304 103107) (frame '2'; 195 bp, 65 residues) 1 NSLKKEGAND QYGHDNEASA IKEHIDITLH KILKKVQVPE IMKNEEISIS YVLLESISNN 61 RRWYL- PGL 14 (+ strand): 104803 108905 AGS-1 (104803 105551,105649 106119) SCR (e 0.913 d 0.000 a 0.624,e 0.938) Exon 1 104803 105551 ( 749 n); score: 0.913 Intron 1 105552 105648 ( 97 n); Pd: 0.000 Pa: 0.624 Exon 2 105649 106119 ( 471 n); score: 0.938 PGS (104803 105426) SGN-E542836+ PGS (104812 105167) SGN-E204533+ PGS (104854 105551,105649 105713) SGN-E354965- PGS (105688 106073) SGN-E338242- PGS (105728 106073) SGN-E548779- PGS (105767 106063) SGN-E301830- PGS (106063 106119) SGN-E556370+ 3-phase translation of AGS-1 (+strand): . . . . . . 104803 TTTTTTCTCAAACCTTCCATAGAGGTGAGTTGTAACATATATCCAACCCATAATGATTTT F F L K P S I E V S C N I Y P T H N D F F F S N L P - R - V V T Y I Q P I M I L F S Q T F H R G E L - H I S N P - - F . . . . . . 104863 ATCATATCTGGACCCATTCTCATATAGAATGGTCGAGCATTCACCATACTCATCACAAGT I I S G P I L I - N G R A F T I L I T S S Y L D P F S Y R M V E H S P Y S S Q V Y H I W T H S H I E W S S I H H T H H K . . . . . . 104923 CACATTCTCTTCAAGGAATGGACTAATTATTTATTTGTATTTCATAAATTTGCATTATAA H I L F K E W T N Y L F V F H K F A L - T F S S R N G L I I Y L Y F I N L H Y K S H S L Q G M D - L F I C I S - I C I I . . . . . . 104983 GCACATTGTCATGGCTTTAAAATTCATCATATTTCCATGACACACCTCAACATCACTTTT A H C H G F K I H H I S M T H L N I T F H I V M A L K F I I F P - H T S T S L L S T L S W L - N S S Y F H D T P Q H H F . . . . . . 105043 AAAGATTAAGTGTACCATCACTTTATCTTCTTGTATCATGATAGAGGATTTATAAACTTG K D - V Y H H F I F L Y H D R G F I N L K I K C T I T L S S C I M I E D L - T C - R L S V P S L Y L L V S - - R I Y K L . . . . . . 105103 TCAAATTATTGGGTCGACAACATTCACAAGTCCAATGTCCTTTCATACCATTTTGATAAT S N Y W V D N I H K S N V L S Y H F D N Q I I G S T T F T S P M S F H T I L I M V K L L G R Q H S Q V Q C P F I P F - - . . . . . . 105163 GAAAACTGTCTTCACATTTTGAAGGACTATTTGGAGAACCCATAGTGTTCTTCCTTTTAT E N C L H I L K D Y L E N P - C S S F Y K T V F T F - R T I W R T H S V L P F I - K L S S H F E G L F G E P I V F F L L . . . . . . 105223 ATTTACCACAATGATGACTATTATAATTCCGTCCCTTCATGCCCTTTTTCATATCGCTAA I Y H N D D Y Y N S V P S C P F S Y R - F T T M M T I I I P S L H A L F H I A N Y L P Q - - L L - F R P F M P F F I S L . . . . . . 105283 TCATTTGTCATCTTTCAGACTAATTATTTACTGCTACCACATTCATACGATAGAATAGAG S F V I F Q T N Y L L L P H S Y D R I E H L S S F R L I I Y C Y H I H T I E - S I I C H L S D - L F T A T T F I R - N R . . . . . . 105343 CAAGTCAGCATCGGATTTCAAAGTTATCATATGTTGCTACCACATTCTTTTCAAGGAATG Q V S I G F Q S Y H M L L P H S F Q G M K S A S D F K V I I C C Y H I L F K E W A S Q H R I S K L S Y V A T T F F S R N . . . . . . 105403 GAGCAAGTTCAATATGACAAATTTCAAAGCTTTTCATCAAAACCTTAGTCATCATTGTTT E Q V Q Y D K F Q S F S S K P - S S L F S K F N M T N F K A F H Q N L S H H C F G A S S I - Q I S K L F I K T L V I I V . . . . . . 105463 CATCACTATGGTGCATTGACTCAAACTCAATGTCTTATCCATACAAGGCGTGTTAGGCCA H H Y G A L T Q T Q C L I H T R R V R P I T M V H - L K L N V L S I Q G V L G Q S S L W C I D S N S M S Y P Y K A C - A . . . : . . . 105523 AATTCTAAAGGACTTGAACCCAATCCTTA : TGCATCCGGACTTTAACCTGATGTCTTACCC N S K G L E P N P Y : A S G L - P D V L P I L K D L N P I L : M H P D F N L M S Y P K F - R T - T Q S L : C I R T L T - C L T . . . . . . 105680 TTTTGGTGCGATGAAACTTGAATCCATCGTCTTACCCTTAACCAACGGTATAATAGACCA F W C D E T - I H R L T L N Q R Y N R P F G A M K L E S I V L P L T N G I I D Q L L V R - N L N P S S Y P - P T V - - T . . . . . . 105740 AAGTACAACATGACTCACCCTTTCAGTCTTTCAAAACAATCAAAATAACATTCAAACTCA K Y N M T H P F S L S K Q S K - H S N S S T T - L T L S V F Q N N Q N N I Q T H K V Q H D S P F Q S F K T I K I T F K L . . . . . . 105800 TGCTATTAAAATTTTGTACCTTCTTCTATTTAAGAAGTTTTGTATAGCATGTTATATTCA C Y - N F V P S S I - E V L Y S M L Y S A I K I L Y L L L F K K F C I A C Y I Q M L L K F C T F F Y L R S F V - H V I F . . . . . . 105860 ACCAATAGTAGTATATGTCTTCGGTTCTTGATAATTGTTAGTGACTGAATATTATTTTTA T N S S I C L R F L I I V S D - I L F L P I V V Y V F G S - - L L V T E Y Y F Y N Q - - Y M S S V L D N C - - L N I I F . . . . . . 105920 TTCTAAATCATAAAATATTCTAGAAAATACATACCTGATTTTATGCATATAATACCTTGA F - I I K Y S R K Y I P D F M H I I P - S K S - N I L E N T Y L I L C I - Y L D I L N H K I F - K I H T - F Y A Y N T L . . . . . . 105980 TTCTCATAACGAGATCAACCAAAACACGAGTTAATGAAAAAACTAAAACTCAATCTTAAT F S - R D Q P K H E L M K K L K L N L N S H N E I N Q N T S - - K N - N S I L I I L I T R S T K T R V N E K T K T Q S - . . . . . . 106040 TGGCTAGAGATTCGTGCTGATAACGTGTTATAAAATCAAGCTCATAAGAATATAATCATA W L E I R A D N V L - N Q A H K N I I I G - R F V L I T C Y K I K L I R I - S - L A R D S C - - R V I K S S S - E Y N H . . 106100 AAGAGAAGAAGACAAGAGAA K R R R Q E R E E D K R K E K K T R E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (105446 105643,108377 108428,108879 108905) SCR (e 0.854 d 0.000 a 0.000,e 0.615 d 0.000 a 0.088,e 0.778) Exon 1 105446 105643 ( 198 n); score: 0.854 Intron 1 105644 108376 (2733 n); Pd: 0.000 Pa: 0.000 Exon 2 108377 108428 ( 52 n); score: 0.615 Intron 2 108429 108878 ( 450 n); Pd: 0.000 Pa: 0.088 Exon 3 108879 108905 ( 27 n); score: 0.778 PGS (105446 105643,108377 108428,108879 108905) SGN-E248730+ PGS (105446 105646) SGN-E254688+ PGS (105446 105646) SGN-E250127+ PGS (105473 105643,108377 108428,108879 108905) SGN-E259955+ PGS (105473 105643,108377 108428,108879 108905) SGN-E255405+ PGS (105473 105643,108377 108428,108879 108905) SGN-E256408+ PGS (105473 105646) SGN-E261191+ PGS (105473 105644) SGN-E260221+ PGS (105473 105644) SGN-E261435+ PGS (105473 105644) SGN-E263280+ PGS (105480 105643,108377 108428,108879 108905) SGN-E251501+ PGS (105480 105644) SGN-E260587+ PGS (105480 105644) SGN-E260602+ PGS (105480 105644) SGN-E375221+ 3-phase translation of AGS-2 (+strand): . . . . . . 105446 CTTAGTCATCATTGTTTCATCACTATGGTGCATTGACTCAAACTCAATGTCTTATCCATA L S H H C F I T M V H - L K L N V L S I L V I I V S S L W C I D S N S M S Y P Y - S S L F H H Y G A L T Q T Q C L I H . . . . . . 105506 CAAGGCGTGTTAGGCCAAATTCTAAAGGACTTGAACCCAATCCTTATCATCATGGTGCAT Q G V L G Q I L K D L N P I L I I M V H K A C - A K F - R T - T Q S L S S W C I T R R V R P N S K G L E P N P Y H H G A . . . . . . 105566 CAAAACTCAGATTTGATGTCTTATCCTCTTGGTGCGATAGATTTTAAATCTATCGTCTTA Q N S D L M S Y P L G A I D F K S I V L K T Q I - C L I L L V R - I L N L S S Y S K L R F D V L S S W C D R F - I Y R L . . : . . . . 105626 TCCTCAAATATTTTTCAT : AATGTGTGTGATTACTTGATCATTTTTATACAAATTAAAGTA S S N I F H : N V C D Y L I I F I Q I K V P Q I F F I : M C V I T - S F L Y K L K Y I L K Y F S : - C V - L L D H F Y T N - S . : . . . 108419 TTTACTTGTA : TTTTTCTCTGTGGTGATTATAATGATG F T C : I F L C G D Y N D L L V : F F S V V I I M M I Y L Y : F S L W - L - - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-14_AGS-2_PPS_1 (105482 105643,108377 108428,108879 108904) (frame '1'; 240 bp, 80 residues) 1 LKLNVLSIQG VLGQILKDLN PILIIMVHQN SDLMSYPLGA IDFKSIVLSS NIFHNVCDYL 61 IIFIQIKVFT CIFLCGDYND PGL 15 (+ strand): 110898 111442 AGS-1 (110898 111442) SCR (e 0.996) Exon 1 110898 111442 ( 545 n); score: 0.996 PGS (110898 111442) SGN-E200029+ 3-phase translation of AGS-1 (+strand): . . . . . . 110898 GCAAGGACCGGGTTCACATTATTGATTTTGACATTAAGCAAGGGCTGCAGTGGCCTAGCC A R T G F T L L I L T L S K G C S G L A Q G P G S H Y - F - H - A R A A V A - P K D R V H I I D F D I K Q G L Q W P S . . . . . . 110958 TGTTTCAGAGTTTGGCTTCTAGGCCCAACCCTCCTACTCATGTTAGAATTACTGGTATAG C F R V W L L G P T L L L M L E L L V - V S E F G F - A Q P S Y S C - N Y W Y R L F Q S L A S R P N P P T H V R I T G I . . . . . . 111018 GAGAATCAAAGCAGGATCTTGTTGAAACAGGAGATAGACTTGCTGAGTTTGCTGAGGCGT E N Q S R I L L K Q E I D L L S L L R R R I K A G S C - N R R - T C - V C - G V G E S K Q D L V E T G D R L A E F A E A . . . . . . 111078 TGAATCTGGCTTTCGAGTTCCATCCAGTTGTTGACAGGTTGGAAGATGTACGGCTATGGA - I W L S S S I Q L L T G W K M Y G Y G E S G F R V P S S C - Q V G R C T A M D L N L A F E F H P V V D R L E D V R L W . . . . . . 111138 TGCTTCATGTAAAAGAGGGAGAAAGTGTTGCAGTGAATTGTGTGTTGCAGATGCATAGGC C F M - K R E K V L Q - I V C C R C I G A S C K R G R K C C S E L C V A D A - A M L H V K E G E S V A V N C V L Q M H R . . . . . . 111198 TTCTATATGATAGTTCTGGGGGGATCCTGAGAGACTTTTTGGGGCTGATTAGAAGCACAA F Y M I V L G G S - E T F W G - L E A Q S I - - F W G D P E R L F G A D - K H K L L Y D S S G G I L R D F L G L I R S T . . . . . . 111258 ATCCCACCATTATTCTGATGGCAGAGCAAGAAGCTGAGCACAATGAGCCTAGCTTGGAAG I P P L F - W Q S K K L S T M S L A W K S H H Y S D G R A R S - A Q - A - L G S N P T I I L M A E Q E A E H N E P S L E . . . . . . 111318 CAAGACTTGTCAACTCACTTAGATACTATGCTGCTGTATTTGATTCTATTGCTTTCGGTC Q D L S T H L D T M L L Y L I L L L S V K T C Q L T - I L C C C I - F Y C F R S A R L V N S L R Y Y A A V F D S I A F G . . . . . . 111378 TTCCATTAGACAGTCCTGCCAGGATTAAGATAGAGGAGTTGTTTGCTCGGGATATTAGAA F H - T V L P G L R - R S C L L G I L E S I R Q S C Q D - D R G V V C S G Y - K L P L D S P A R I K I E E L F A R D I R . 111438 ATATC I Y N I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-15_AGS-1_PPS_1 (110900 111442) (frame '0'; 543 bp, 181 residues) 1 KDRVHIIDFD IKQGLQWPSL FQSLASRPNP PTHVRITGIG ESKQDLVETG DRLAEFAEAL 61 NLAFEFHPVV DRLEDVRLWM LHVKEGESVA VNCVLQMHRL LYDSSGGILR DFLGLIRSTN 121 PTIILMAEQE AEHNEPSLEA RLVNSLRYYA AVFDSIAFGL PLDSPARIKI EELFARDIRN 181 I 3-phase translation of AGS-1 (-strand): . . . . . . 111442 GATATTTCTAATATCCCGAGCAAACAACTCCTCTATCTTAATCCTGGCAGGACTGTCTAA D I S N I P S K Q L L Y L N P G R T V - I F L I S R A N N S S I L I L A G L S N Y F - Y P E Q T T P L S - S W Q D C L . . . . . . 111382 TGGAAGACCGAAAGCAATAGAATCAAATACAGCAGCATAGTATCTAAGTGAGTTGACAAG W K T E S N R I K Y S S I V S K - V D K G R P K A I E S N T A A - Y L S E L T S M E D R K Q - N Q I Q Q H S I - V S - Q . . . . . . 111322 TCTTGCTTCCAAGCTAGGCTCATTGTGCTCAGCTTCTTGCTCTGCCATCAGAATAATGGT S C F Q A R L I V L S F L L C H Q N N G L A S K L G S L C S A S C S A I R I M V V L L P S - A H C A Q L L A L P S E - W . . . . . . 111262 GGGATTTGTGCTTCTAATCAGCCCCAAAAAGTCTCTCAGGATCCCCCCAGAACTATCATA G I C A S N Q P Q K V S Q D P P R T I I G F V L L I S P K K S L R I P P E L S Y W D L C F - S A P K S L S G S P Q N Y H . . . . . . 111202 TAGAAGCCTATGCATCTGCAACACACAATTCACTGCAACACTTTCTCCCTCTTTTACATG - K P M H L Q H T I H C N T F S L F Y M R S L C I C N T Q F T A T L S P S F T - I E A Y A S A T H N S L Q H F L P L L H . . . . . . 111142 AAGCATCCATAGCCGTACATCTTCCAACCTGTCAACAACTGGATGGAACTCGAAAGCCAG K H P - P Y I F Q P V N N W M E L E S Q S I H S R T S S N L S T T G W N S K A R E A S I A V H L P T C Q Q L D G T R K P . . . . . . 111082 ATTCAACGCCTCAGCAAACTCAGCAAGTCTATCTCCTGTTTCAACAAGATCCTGCTTTGA I Q R L S K L S K S I S C F N K I L L - F N A S A N S A S L S P V S T R S C F D D S T P Q Q T Q Q V Y L L F Q Q D P A L . . . . . . 111022 TTCTCCTATACCAGTAATTCTAACATGAGTAGGAGGGTTGGGCCTAGAAGCCAAACTCTG F S Y T S N S N M S R R V G P R S Q T L S P I P V I L T - V G G L G L E A K L - I L L Y Q - F - H E - E G W A - K P N S . . . . . . 110962 AAACAGGCTAGGCCACTGCAGCCCTTGCTTAATGTCAAAATCAATAATGTGAACCCGGTC K Q A R P L Q P L L N V K I N N V N P V N R L G H C S P C L M S K S I M - T R S E T G - A T A A L A - C Q N Q - C E P G . 110902 CTTGC L L P C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-15_AGS-1_PPS_1 (111245 111006) (frame '0'; 237 bp, 79 residues) 1 SAPKSLSGSP QNYHIEAYAS ATHNSLQHFL PLLHEASIAV HLPTCQQLDG TRKPDSTPQQ 61 TQQVYLLFQQ DPALILLYQ- PGL 16 (- strand): 114031 112216 AGS-1 (114031 113350,112940 112216) SCR (e 0.979 d 0.879 a 0.666,e 1.000) Exon 1 114031 113350 ( 682 n); score: 0.979 Intron 1 113349 112941 ( 409 n); Pd: 0.879 Pa: 0.666 Exon 2 112940 112216 ( 725 n); score: 1.000 PGS (112925 112216) SGN-E375456- PGS (112523 112222) SGN-E391657- PGS (113731 113350,112940 112775) SGN-E254420+ PGS (113731 113484) SGN-E375457+ PGS (114031 113556) SGN-E391658+ PGS (114030 113562) SGN-E246615+ 3-phase translation of AGS-1 (-strand): . . . . . . 114031 CAATTAGAAATTATGTTCCTGCTTCCACTTTTCCTCTTGGCCTTGACTTTTTTCATCTTC Q L E I M F L L P L F L L A L T F F I F N - K L C S C F H F S S W P - L F S S S I R N Y V P A S T F P L G L D F F H L . . . . . . 113971 AATATTTTCAGATCATCAAAAACCACACAACTTCCACCAGGATCAACACCATGGCCAGTC N I F R S S K T T Q L P P G S T P W P V I F S D H Q K P H N F H Q D Q H H G Q S Q Y F Q I I K N H T T S T R I N T M A S . . . . . . 113911 ATAGGTAGTATTTTTCAAATGGTAAAAATGCCTCACATAACTCTGACAAATTTAGCAAAA I G S I F Q M V K M P H I T L T N L A K - V V F F K W - K C L T - L - Q I - Q K H R - Y F S N G K N A S H N S D K F S K . . . . . . 113851 ACTTATGGCCCTGTTATGTCCCTAAAGCTTGGAACTAAATGGTTAGTTGTTGGATCATCA T Y G P V M S L K L G T K W L V V G S S L M A L L C P - S L E L N G - L L D H H N L W P C Y V P K A W N - M V S C W I I . . . . . . 113791 TCTCTTGCTGCTATAGAAATCCTCAAAACCCATGATAGAATTCTGTCAGGGAGAGATGTT S L A A I E I L K T H D R I L S G R D V L L L L - K S S K P M I E F C Q G E M F I S C C Y R N P Q N P - - N S V R E R C . . . . . . 113731 CCAAATGCTGCTCCATCAAAAGGGTTAGATCTTGACAAGACATCACTGGGCTGGAGATCT P N A A P S K G L D L D K T S L G W R S Q M L L H Q K G - I L T R H H W A G D L S K C C S I K R V R S - Q D I T G L E I . . . . . . 113671 GAATGTAACAGTGGATGGAGATACTTGAGGACTTTATGCAGAGCCGAGCTTTTCGCTGGA E C N S G W R Y L R T L C R A E L F A G N V T V D G D T - G L Y A E P S F S L E - M - Q W M E I L E D F M Q S R A F R W . . . . . . 113611 AAAGTATTGGAGTCTCAAGCTTGTCTGAGGGAGAAAAAAGTGATGGAATTGGTAGAATTC K V L E S Q A C L R E K K V M E L V E F K Y W S L K L V - G R K K - W N W - N S K S I G V S S L S E G E K S D G I G R I . . . . . . 113551 TTGAGGTCAAAAGAAGGTCAAGTGGTGAATATTGGAGAGCTAGTCTTTGCAACTGTGATG L R S K E G Q V V N I G E L V F A T V M - G Q K K V K W - I L E S - S L Q L - - L E V K R R S S G E Y W R A S L C N C D . . . . . . 113491 AACATGCTGGGTAATGTTCTGATATCCAAGGATATGGTTAATTTGGAGGAAGAAATAGAA N M L G N V L I S K D M V N L E E E I E T C W V M F - Y P R I W L I W R K K - K E H A G - C S D I Q G Y G - F G G R N R . . . . . . 113431 GATGGCGAGATAAAAAGTCTTGTAAGGGGAATAGTGGAAGTGCTCTCTGCTCCAAATATA D G E I K S L V R G I V E V L S A P N I M A R - K V L - G E - W K C S L L Q I Y R W R D K K S C K G N S G S A L C S K Y . . . : . . . 113371 TCTGATTTATATCCTGTTTTAG : GAGTTACTCTTAGCTGGTTCAGACACCACTACCTCAAC S D L Y P V L : G V T L S W F R H H Y L N L I Y I L F - : E L L L A G S D T T T S T I - F I S C F R : S Y S - L V Q T P L P Q . . . . . . 112902 AATTGAGTGGGCGATGGCAGAACTGATAAAGAACGTAGAGTCAATGAAGAAAGTTCAAGA N - V G D G R T D K E R R V N E E S S R I E W A M A E L I K N V E S M K K V Q E Q L S G R W Q N - - R T - S Q - R K F K . . . . . . 112842 GGAGCTTGAGATAGAACTCAGTGAAAGTGATTACCTAAAAGAATCTCAATTGCTGCAGAT G A - D R T Q - K - L P K R I S I A A D E L E I E L S E S D Y L K E S Q L L Q M R S L R - N S V K V I T - K N L N C C R . . . . . . 112782 GTCCTATATCCAAGCCTGTGTAAAGGAAACACTTAGGTTGCATCCTCCAGGACCATTGTT V L Y P S L C K G N T - V A S S R T I V S Y I Q A C V K E T L R L H P P G P L L C P I S K P V - R K H L G C I L Q D H C . . . . . . 112722 GCTTCCACATCGTGCTATCAAAACATGCCAAGTGATGAGTTACACAATTCCTAAAGACGC A S T S C Y Q N M P S D E L H N S - R R L P H R A I K T C Q V M S Y T I P K D A C F H I V L S K H A K - - V T Q F L K T . . . . . . 112662 GCAAATCTTTGTTAACGTCTGGGCTATCACAAGGGATCCTTTGATATGGGAAGAACCAGA A N L C - R L G Y H K G S F D M G R T R Q I F V N V W A I T R D P L I W E E P D R K S L L T S G L S Q G I L - Y G K N Q . . . . . . 112602 CATGTTTAGACCACAGAGGTTTCTGAATTCTGATATGGATTTCAAAGGGAATGACTTTGA H V - T T E V S E F - Y G F Q R E - L - M F R P Q R F L N S D M D F K G N D F E T C L D H R G F - I L I W I S K G M T L . . . . . . 112542 GTACTTACCCTTTGGTGCAGGACGAAGAATATGCCCAGCCCTGCCAATGGCTGCAATAGA V L T L W C R T K N M P S P A N G C N R Y L P F G A G R R I C P A L P M A A I E S T Y P L V Q D E E Y A Q P C Q W L Q - . . . . . . 112482 AATTCCGTTAGTCCTTGCTTTACTTGTTCGTTTCTTTGATTGGGAACTTCCTCATGGAAA N S V S P C F T C S F L - L G T S S W K I P L V L A L L V R F F D W E L P H G K K F R - S L L Y L F V S L I G N F L M E . . . . . . 112422 ATGTCCTGTTGAGCTAGACATGACTGAACAGTTTGGAGTAACACTACAAAAGAAAGAACC M S C - A R H D - T V W S N T T K E R T C P V E L D M T E Q F G V T L Q K K E P N V L L S - T - L N S L E - H Y K R K N . . . . . . 112362 GCTGCTTCTGATTCCCAAGGCCAGAAAATAACCTTGCACTGTGTGGTGGTGGTAGATACT A A S D S Q G Q K I T L H C V V V V D T L L L I P K A R K - P C T V W W W - I L R C F - F P R P E N N L A L C G G G R Y . . . . . . 112302 AGTATATGTTTTCCTTCTGTGTTTGTGTAGTTGTTTATAGACAAGACCATGTGCAATATA S I C F P S V F V - L F I D K T M C N I V Y V F L L C L C S C L - T R P C A I Y - Y M F S F C V C V V V Y R Q D H V Q Y . . . 112242 TATATAATATATTTCATTTGGGTTTTA Y I I Y F I W V L I - Y I S F G F I Y N I F H L G F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-16_AGS-1_PPS_1 (114031 113350,112940 112897) (frame '1'; 723 bp, 241 residues) 1 QLEIMFLLPL FLLALTFFIF NIFRSSKTTQ LPPGSTPWPV IGSIFQMVKM PHITLTNLAK 61 TYGPVMSLKL GTKWLVVGSS SLAAIEILKT HDRILSGRDV PNAAPSKGLD LDKTSLGWRS 121 ECNSGWRYLR TLCRAELFAG KVLESQACLR EKKVMELVEF LRSKEGQVVN IGELVFATVM 181 NMLGNVLISK DMVNLEEEIE DGEIKSLVRG IVEVLSAPNI SDLYPVLGVT LSWFRHHYLN 241 N- PGL 17 (- strand): 116792 114517 AGS-1 (114966 114517) SCR (e 1.000) Exon 1 114966 114517 ( 450 n); score: 1.000 PGS (114966 114517) SGN-E539348- PGS (114966 114517) SGN-E539430- PGS (114966 114517) SGN-E548206+ PGS (114966 114517) SGN-E539433+ PGS (114965 114517) SGN-E281666+ PGS (114849 114611) SGN-E295509+ 3-phase translation of AGS-1 (-strand): . . . . . . 114966 CAAAGAATTTGTTTACCTTTTCCCTCTGTACAGAATGAACAACAGTTGTGTGTCTATGAC Q R I C L P F P S V Q N E Q Q L C V Y D K E F V Y L F P L Y R M N N S C V S M T K N L F T F S L C T E - T T V V C L - . . . . . . 114906 TAAATGAAGAGCTTTGTCAAAAGAACAATCAATAAACTTGGCTGATAATAAGAGGATGAA - M K S F V K R T I N K L G - - - E D E K - R A L S K E Q S I N L A D N K R M N L N E E L C Q K N N Q - T W L I I R G - . . . . . . 114846 CTTCCATCAGCATCAAGGGGTGCTTAAACGGGGACTGTGTGCAGCACTGTCGTCCTCTGC L P S A S R G A - T G T V C S T V V L C F H Q H Q G V L K R G L C A A L S S S A T S I S I K G C L N G D C V Q H C R P L . . . . . . 114786 TTTGTGATCCTGTAGTCCTCACATGAATACATCTTCAACAGTTCCCTTTTGTGTTATCCC F V I L - S S H E Y I F N S S L L C Y P L - S C S P H M N T S S T V P F C V I P L C D P V V L T - I H L Q Q F P F V L S . . . . . . 114726 TGTGCATTAGATACAAGTATTTCTTGTCCTCCTGTAATATCGTGTAATCATAAACAGAAG C A L D T S I S C P P V I S C N H K Q K V H - I Q V F L V L L - Y R V I I N R S L C I R Y K Y F L S S C N I V - S - T E . . . . . . 114666 TTCTTTTGGTGATAAGAGACAAGTTATAGTCCTATTAAGACAAGATCATGTGTCAAGTTG F F W - - E T S Y S P I K T R S C V K L S F G D K R Q V I V L L R Q D H V S S C V L L V I R D K L - S Y - D K I M C Q V . . . . . . 114606 CATGATTTCCAAGTAAAAATGTTTCACTTGGGTGTACTCTCCTTACCATTGATGAGAATG H D F Q V K M F H L G V L S L P L M R M M I S K - K C F T W V Y S P Y H - - E W A - F P S K N V S L G C T L L T I D E N . . . 114546 GAACAGTATTCACAAGATGATTATCACAAA E Q Y S Q D D Y H K N S I H K M I I T G T V F T R - L S Q Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 114517 TTTGTGATAATCATCTTGTGAATACTGTTCCATTCTCATCAATGGTAAGGAGAGTACACC F V I I I L - I L F H S H Q W - G E Y T L - - S S C E Y C S I L I N G K E S T P C D N H L V N T V P F S S M V R R V H . . . . . . 114577 CAAGTGAAACATTTTTACTTGGAAATCATGCAACTTGACACATGATCTTGTCTTAATAGG Q V K H F Y L E I M Q L D T - S C L N R K - N I F T W K S C N L T H D L V L I G P S E T F L L G N H A T - H M I L S - - . . . . . . 114637 ACTATAACTTGTCTCTTATCACCAAAAGAACTTCTGTTTATGATTACACGATATTACAGG T I T C L L S P K E L L F M I T R Y Y R L - L V S Y H Q K N F C L - L H D I T G D Y N L S L I T K R T S V Y D Y T I L Q . . . . . . 114697 AGGACAAGAAATACTTGTATCTAATGCACAGGGATAACACAAAAGGGAACTGTTGAAGAT R T R N T C I - C T G I T Q K G T V E D G Q E I L V S N A Q G - H K R E L L K M E D K K Y L Y L M H R D N T K G N C - R . . . . . . 114757 GTATTCATGTGAGGACTACAGGATCACAAAGCAGAGGACGACAGTGCTGCACACAGTCCC V F M - G L Q D H K A E D D S A A H S P Y S C E D Y R I T K Q R T T V L H T V P C I H V R T T G S Q S R G R Q C C T Q S . . . . . . 114817 CGTTTAAGCACCCCTTGATGCTGATGGAAGTTCATCCTCTTATTATCAGCCAAGTTTATT R L S T P - C - W K F I L L L S A K F I V - A P L D A D G S S S S Y Y Q P S L L P F K H P L M L M E V H P L I I S Q V Y . . . . . . 114877 GATTGTTCTTTTGACAAAGCTCTTCATTTAGTCATAGACACACAACTGTTGTTCATTCTG D C S F D K A L H L V I D T Q L L F I L I V L L T K L F I - S - T H N C C S F C - L F F - Q S S S F S H R H T T V V H S . . . 114937 TACAGAGGGAAAAGGTAAACAAATTCTTTG Y R G K R - T N S L T E G K G K Q I L V Q R E K V N K F F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (116792 116110,115661 115051) SCR (e 0.863 d 0.687 a 0.835,e 0.945) Exon 1 116792 116110 ( 683 n); score: 0.863 Intron 1 116109 115662 ( 448 n); Pd: 0.687 Pa: 0.835 Exon 2 115661 115051 ( 611 n); score: 0.945 PGS (115646 115051) SGN-E375456- PGS (115238 115051) SGN-E391657- PGS (116494 116110,115661 115497) SGN-E254420+ PGS (116494 116246) SGN-E375457+ PGS (116792 116319) SGN-E391658+ PGS (116792 116325) SGN-E246615+ 3-phase translation of AGS-2 (-strand): . . . . . . 116792 ATTTGAAATTCTTTTCCTGCTTCCATTTTTCCTTTTACCCTTAACTTTTTTCTACTTCAA I - N S F P A S I F P F T L N F F L L Q F E I L F L L P F F L L P L T F F Y F K L K F F S C F H F S F Y P - L F S T S . . . . . . 116732 AGTTCTCAGATCATCCGAAATCACACAACTTCCACCAGGACCAACACCATGGCCAGTCAT S S Q I I R N H T T S T R T N T M A S H V L R S S E I T Q L P P G P T P W P V I K F S D H P K S H N F H Q D Q H H G Q S . . . . . . 116672 AGGAAACATTTTTCATATGGGAAAAATGCCTCATATAACTCTGACAAATTTTGCAAAAAT R K H F S Y G K N A S Y N S D K F C K N G N I F H M G K M P H I T L T N F A K I - E T F F I W E K C L I - L - Q I L Q K . . . . . . 116612 ATATGGCCCTCTCATGTCCCTGAGGCTTGGAAGTCAATGTCTAGTTGTTGGATCATCAAC I W P S H V P E A W K S M S S C W I I N Y G P L M S L R L G S Q C L V V G S S T Y M A L S C P - G L E V N V - L L D H Q . . . . . . 116552 TTCTACTGCTATAGAAATCCTCAAAACCCATGATAGAATTCTGTCAGGGAGACATGTTCC F Y C Y R N P Q N P - - N S V R E T C S S T A I E I L K T H D R I L S G R H V P L L L L - K S S K P M I E F C Q G D M F . . . . . . 116492 AAATGCTGTTCCAGCAAAAAGATCAGATCTTGACAAGATATCAATGGGCTGGACTTCTGA K C C S S K K I R S - Q D I N G L D F - N A V P A K R S D L D K I S M G W T S E Q M L F Q Q K D Q I L T R Y Q W A G L L . . . . . . 116432 GTGTCACAATGAATGGAGATACTTGAGGACTTTATGCAGAGCTGAGCTGTTCTCAGGCAA V S Q - M E I L E D F M Q S - A V L R Q C H N E W R Y L R T L C R A E L F S G K S V T M N G D T - G L Y A E L S C S Q A . . . . . . 116372 AGTATTGGAGTCTCAAGCTTATTTGAGGGAGAAAAAAGTGATGGAATTGGTAGAATTCTT S I G V S S L F E G E K S D G I G R I L V L E S Q A Y L R E K K V M E L V E F L K Y W S L K L I - G R K K - W N W - N S . . . . . . 116312 GAGGTCAAAAGAAGGTCAAGTGGTGAATATTGGAGAGCTAGTAGTCTTTGCAACTGTTTT E V K R R S S G E Y W R A S S L C N C F R S K E G Q V V N I G E L V V F A T V L - G Q K K V K W - I L E S - - S L Q L F . . . . . . 116252 GAACATGTTGAGTAATGTTCTGATATCTAAAGATATGGTTAATTTGGAGAAAGAAATAGA E H V E - C S D I - R Y G - F G E R N R N M L S N V L I S K D M V N L E K E I E - T C - V M F - Y L K I W L I W R K K - . . . . . . 116192 AGATGGTGGGATTAGAAATCTAATAAGGGGATTAGTGGAAGCAATCTCAGCTCCAAATGT R W W D - K S N K G I S G S N L S S K C D G G I R N L I R G L V E A I S A P N V K M V G L E I - - G D - W K Q S Q L Q M . . . : . . . 116132 ATCTGATTTTTATCCAGTATTAG : GAGTTAGTCTCTGCTGGTTCAGACACCAGTACCTCAA I - F L S S I R : S - S L L V Q T P V P Q S D F Y P V L : G V S L C W F R H Q Y L N Y L I F I Q Y - : E L V S A G S D T S T S . . . . . . 115624 CAATTGAGTGGGCGATGGCAGAACTGATAAAAAATGTAGAGACAATGAAGAAAGTTCAAG Q L S G R W Q N - - K M - R Q - R K F K N - V G D G R T D K K C R D N E E S S R T I E W A M A E L I K N V E T M K K V Q . . . . . . 115564 AGGAGCTCGAGATAGAACTCAGTGAAAGTGATTACCCAAAAGAATCTCAATTGCTGCAGA R S S R - N S V K V I T Q K N L N C C R G A R D R T Q - K - L P K R I S I A A D E E L E I E L S E S D Y P K E S Q L L Q . . . . . . 115504 TGTCCTATGTCCAAGCCTGTGTGAAGGAAACACTTAGGTTGCATCCTCCAGCACCATTTC C P M S K P V - R K H L G C I L Q H H F V L C P S L C E G N T - V A S S S T I S M S Y V Q A C V K E T L R L H P P A P F . . . . . . 115444 TGCTTCCACATCGTGCTATCGAAACCTGCCAAGTGATGAATCACACAATTCCTAAAGACG C F H I V L S K P A K - - I T Q F L K T A S T S C Y R N L P S D E S H N S - R R L L P H R A I E T C Q V M N H T I P K D . . . . . . 115384 CTCAAATCTTGGTTAATGTCTGGGCTATCATGAGGGATCCTTTGATATGGGAAGATCCAG L K S W L M S G L S - G I L - Y G K I Q S N L G - C L G Y H E G S F D M G R S R A Q I L V N V W A I M R D P L I W E D P . . . . . . 115324 AGATGTTTAGACCACAGAGGTTTCTGAGTTCCGATATGGACTTCAAAGGGAATGACTTTG R C L D H R G F - V P I W T S K G M T L D V - T T E V S E F R Y G L Q R E - L - E M F R P Q R F L S S D M D F K G N D F . . . . . . 115264 AGTTCTTACCCTTTGGTGCAGGAAGGAGAATATGCCCAGGCCTGCCAATGGCTGCAATAA S S Y P L V Q E G E Y A Q A C Q W L Q - V L T L W C R K E N M P R P A N G C N N E F L P F G A G R R I C P G L P M A A I . . . . . . 115204 TAATTCCCTTAGTCCTTGCTTCGCTTGTTCATTTCTTTGATTGGGAGCTTCCTCACAGAG - F P - S L L R L F I S L I G S F L T E N S L S P C F A C S F L - L G A S S Q R I I P L V L A S L V H F F D W E L P H R . . . . . . 115144 AACGTCCCACTGAGCTAGACATGACTGAAAAGTTTGGAGTAACACTGCAAAAGAAAGAAC N V P L S - T - L K S L E - H C K R K N T S H - A R H D - K V W S N T A K E R T E R P T E L D M T E K F G V T L Q K K E . . . . 115084 CGCTGCTTCTGATTCCCAAGCCCAGAAAATGACC R C F - F P S P E N D A A S D S Q A Q K M T P L L L I P K P R K - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-17_AGS-2_PPS_1 (116791 116110,115661 115618) (frame '2'; 723 bp, 241 residues) 1 FEILFLLPFF LLPLTFFYFK VLRSSEITQL PPGPTPWPVI GNIFHMGKMP HITLTNFAKI 61 YGPLMSLRLG SQCLVVGSST STAIEILKTH DRILSGRHVP NAVPAKRSDL DKISMGWTSE 121 CHNEWRYLRT LCRAELFSGK VLESQAYLRE KKVMELVEFL RSKEGQVVNI GELVVFATVL 181 NMLSNVLISK DMVNLEKEIE DGGIRNLIRG LVEAISAPNV SDFYPVLGVS LCWFRHQYLN 241 N- PGL 18 (- strand): 118341 117253 AGS-1 (118341 117253) SCR (e 1.000) Exon 1 118341 117253 (1089 n); score: 1.000 PGS (118014 117253) SGN-E369456- PGS (118111 117381) SGN-E369457+ PGS (117771 117418) SGN-E278403- PGS (118111 117679) SGN-E241031+ PGS (118341 117890) SGN-E263867+ PGS (118341 117896) SGN-E265858+ PGS (118341 118224) SGN-E266293+ 3-phase translation of AGS-1 (-strand): . . . . . . 118341 GCTTTTACTTGTATTTTCTTTTATTAGGTTCAATGCGGCCTAGGAAGAACTGGTCATCTT A F T C I F F Y - V Q C G L G R T G H L L L L V F S F I R F N A A - E E L V I F F Y L Y F L L L G S M R P R K N W S S . . . . . . 118281 TGGGCGCATGAAGCTTATGGCATATACCCAGATATAATGACTCTTGCAAAGCCTCTTGCA W A H E A Y G I Y P D I M T L A K P L A G R M K L M A Y T Q I - - L L Q S L L Q L G A - S L W H I P R Y N D S C K A S C . . . . . . 118221 GGAGGTCTACCTATTGGGGCAGTGTTGGTAACTGAAAGAGTTGCTGCTGCCATCAATTAT G G L P I G A V L V T E R V A A A I N Y E V Y L L G Q C W - L K E L L L P S I M R R S T Y W G S V G N - K S C C C H Q L . . . . . . 118161 GGGGATCATGGTAGCACCTTTGCTGGTGGTCCCCTTGTTTGCAACGCTGCAGTTGCTGTG G D H G S T F A G G P L V C N A A V A V G I M V A P L L V V P L F A T L Q L L C W G S W - H L C W W S P C L Q R C S C C . . . . . . 118101 CTGGACAAGATCTCCGGACCAGGTTTCCTTGCCAGTGTCGCAAAGAAAGGTCAAGATTTC L D K I S G P G F L A S V A K K G Q D F W T R S P D Q V S L P V S Q R K V K I S A G Q D L R T R F P C Q C R K E R S R F . . . . . . 118041 AAGGAATTGCTGGTTAAGAAATTAGGAGGGAACTCACATGTGAGAGATGTACGAGGTGTG K E L L V K K L G G N S H V R D V R G V R N C W L R N - E G T H M - E M Y E V W Q G I A G - E I R R E L T C E R C T R C . . . . . . 117981 GGGCTTATTATTGGGATCGACCTTGATGTACCAGCATCTCCGCTGGTTGAAGCATGTCAA G L I I G I D L D V P A S P L V E A C Q G L L L G S T L M Y Q H L R W L K H V N G A Y Y W D R P - C T S I S A G - S M S . . . . . . 117921 CAATCTGGCCTTCTTGTACTGACAGCAGGGAAAGGAAATGTTGTGAGGCTTGTACCACCA Q S G L L V L T A G K G N V V R L V P P N L A F L Y - Q Q G K E M L - G L Y H H T I W P S C T D S R E R K C C E A C T T . . . . . . 117861 TTGACCATCACCGAGCAAGAATTGGACCATGCAGCTGAGATCTTATTCAATTGTTTACCT L T I T E Q E L D H A A E I L F N C L P - P S P S K N W T M Q L R S Y S I V Y L I D H H R A R I G P C S - D L I Q L F T . . . . . . 117801 GTACTAGATAAGACCGCCAATAACTAGGCTCAAATACTCAAAAAAGGGTTTGTTGCATGT V L D K T A N N - A Q I L K K G F V A C Y - I R P P I T R L K Y S K K G L L H V C T R - D R Q - L G S N T Q K R V C C M . . . . . . 117741 TCACTTCTATGGGGAGCTTCACAGGATCATATGCATTTGCTCATGGAGATCACTTTCATG S L L W G A S Q D H M H L L M E I T F M H F Y G E L H R I I C I C S W R S L S - F T S M G S F T G S Y A F A H G D H F H . . . . . . 117681 AGAAGTAACACAATTTATTTGTACGTACAGTTTAAGGTATCGTCTTCTATGAAGCTCTTG R S N T I Y L Y V Q F K V S S S M K L L E V T Q F I C T Y S L R Y R L L - S S C E K - H N L F V R T V - G I V F Y E A L . . . . . . 117621 TCGTACCTGATTGTGTCATTCTGAGGCTGAAGATTCATTTAGGAGCAAACTGGCTATCAG S Y L I V S F - G - R F I - E Q T G Y Q R T - L C H S E A E D S F R S K L A I R V V P D C V I L R L K I H L G A N W L S . . . . . . 117561 AAATACACAGTTGATCTTATTTAGATTTTTCCTGTAGAAGTGAACAATCAGTTTTTAAGT K Y T V D L I - I F P V E V N N Q F L S N T Q L I L F R F F L - K - T I S F - V E I H S - S Y L D F S C R S E Q S V F K . . . . . . 117501 TTTAGATGTATCGTCAATTTGCACCAGCTGAATCGAAATAATGGATGCTGTCCTCTGTAA F R C I V N L H Q L N R N N G C C P L - L D V S S I C T S - I E I M D A V L C N F - M Y R Q F A P A E S K - W M L S S V . . . . . . 117441 TAACATTATATCCATCTTTCTGAAATGTAGAACTTATCTATGTAATCTTGTATGCGTCAT - H Y I H L S E M - N L S M - S C M R H N I I S I F L K C R T Y L C N L V C V M I T L Y P S F - N V E L I Y V I L Y A S . . . . . . 117381 GAACAGAAGTCTTGTACATCAAGTGAATAGTGTTGCCTCGCTTTAGATAGGGTAAGAATA E Q K S C T S S E - C C L A L D R V R I N R S L V H Q V N S V A S L - I G - E Y - T E V L Y I K - I V L P R F R - G K N . . . . . . 117321 TGATTTTCCATATTGAACTTCAAAAGAAAGGAGGAGAAGACAAAGCAAGTTATATTTAAC - F S I L N F K R K E E K T K Q V I F N D F P Y - T S K E R R R R Q S K L Y L T M I F H I E L Q K K G G E D K A S Y I - . 117261 TATTAAGAT Y - D I K L L R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1-_PGL-18_AGS-1_PPS_1 (118314 117775) (frame '1'; 537 bp, 179 residues) 1 VQCGLGRTGH LWAHEAYGIY PDIMTLAKPL AGGLPIGAVL VTERVAAAIN YGDHGSTFAG 61 GPLVCNAAVA VLDKISGPGF LASVAKKGQD FKELLVKKLG GNSHVRDVRG VGLIIGIDLD 121 VPASPLVEAC QQSGLLVLTA GKGNVVRLVP PLTITEQELD HAAEILFNCL PVLDKTANN- 3-phase translation of AGS-1 (+strand): . . . . . . 117253 ATCTTAATAGTTAAATATAACTTGCTTTGTCTTCTCCTCCTTTCTTTTGAAGTTCAATAT I L I V K Y N L L C L L L L S F E V Q Y S - - L N I T C F V F S S F L L K F N M L N S - I - L A L S S P P F F - S S I . . . . . . 117313 GGAAAATCATATTCTTACCCTATCTAAAGCGAGGCAACACTATTCACTTGATGTACAAGA G K S Y S Y P I - S E A T L F T - C T R E N H I L T L S K A R Q H Y S L D V Q D W K I I F L P Y L K R G N T I H L M Y K . . . . . . 117373 CTTCTGTTCATGACGCATACAAGATTACATAGATAAGTTCTACATTTCAGAAAGATGGAT L L F M T H T R L H R - V L H F R K M D F C S - R I Q D Y I D K F Y I S E R W I T S V H D A Y K I T - I S S T F Q K D G . . . . . . 117433 ATAATGTTATTACAGAGGACAGCATCCATTATTTCGATTCAGCTGGTGCAAATTGACGAT I M L L Q R T A S I I S I Q L V Q I D D - C Y Y R G Q H P L F R F S W C K L T I Y N V I T E D S I H Y F D S A G A N - R . . . . . . 117493 ACATCTAAAACTTAAAAACTGATTGTTCACTTCTACAGGAAAAATCTAAATAAGATCAAC T S K T - K L I V H F Y R K N L N K I N H L K L K N - L F T S T G K I - I R S T Y I - N L K T D C S L L Q E K S K - D Q . . . . . . 117553 TGTGTATTTCTGATAGCCAGTTTGCTCCTAAATGAATCTTCAGCCTCAGAATGACACAAT C V F L I A S L L L N E S S A S E - H N V Y F - - P V C S - M N L Q P Q N D T I L C I S D S Q F A P K - I F S L R M T Q . . . . . . 117613 CAGGTACGACAAGAGCTTCATAGAAGACGATACCTTAAACTGTACGTACAAATAAATTGT Q V R Q E L H R R R Y L K L Y V Q I N C R Y D K S F I E D D T L N C T Y K - I V S G T T R A S - K T I P - T V R T N K L . . . . . . 117673 GTTACTTCTCATGAAAGTGATCTCCATGAGCAAATGCATATGATCCTGTGAAGCTCCCCA V T S H E S D L H E Q M H M I L - S S P L L L M K V I S M S K C I - S C E A P H C Y F S - K - S P - A N A Y D P V K L P . . . . . . 117733 TAGAAGTGAACATGCAACAAACCCTTTTTTGAGTATTTGAGCCTAGTTATTGGCGGTCTT - K - T C N K P F F E Y L S L V I G G L R S E H A T N P F L S I - A - L L A V L I E V N M Q Q T L F - V F E P S Y W R S . . . . . . 117793 ATCTAGTACAGGTAAACAATTGAATAAGATCTCAGCTGCATGGTCCAATTCTTGCTCGGT I - Y R - T I E - D L S C M V Q F L L G S S T G K Q L N K I S A A W S N S C S V Y L V Q V N N - I R S Q L H G P I L A R . . . . . . 117853 GATGGTCAATGGTGGTACAAGCCTCACAACATTTCCTTTCCCTGCTGTCAGTACAAGAAG D G Q W W Y K P H N I S F P C C Q Y K K M V N G G T S L T T F P F P A V S T R R - W S M V V Q A S Q H F L S L L S V Q E . . . . . . 117913 GCCAGATTGTTGACATGCTTCAACCAGCGGAGATGCTGGTACATCAAGGTCGATCCCAAT A R L L T C F N Q R R C W Y I K V D P N P D C - H A S T S G D A G T S R S I P I G Q I V D M L Q P A E M L V H Q G R S Q . . . . . . 117973 AATAAGCCCCACACCTCGTACATCTCTCACATGTGAGTTCCCTCCTAATTTCTTAACCAG N K P H T S Y I S H M - V P S - F L N Q I S P T P R T S L T C E F P P N F L T S - - A P H L V H L S H V S S L L I S - P . . . . . . 118033 CAATTCCTTGAAATCTTGACCTTTCTTTGCGACACTGGCAAGGAAACCTGGTCCGGAGAT Q F L E I L T F L C D T G K E T W S G D N S L K S - P F F A T L A R K P G P E I A I P - N L D L S L R H W Q G N L V R R . . . . . . 118093 CTTGTCCAGCACAGCAACTGCAGCGTTGCAAACAAGGGGACCACCAGCAAAGGTGCTACC L V Q H S N C S V A N K G T T S K G A T L S S T A T A A L Q T R G P P A K V L P S C P A Q Q L Q R C K Q G D H Q Q R C Y . . . . . . 118153 ATGATCCCCATAATTGATGGCAGCAGCAACTCTTTCAGTTACCAACACTGCCCCAATAGG M I P I I D G S S N S F S Y Q H C P N R - S P - L M A A A T L S V T N T A P I G H D P H N - W Q Q Q L F Q L P T L P Q - . . . . . . 118213 TAGACCTCCTGCAAGAGGCTTTGCAAGAGTCATTATATCTGGGTATATGCCATAAGCTTC - T S C K R L C K S H Y I W V Y A I S F R P P A R G F A R V I I S G Y M P - A S V D L L Q E A L Q E S L Y L G I C H K L . . . . . . 118273 ATGCGCCCAAAGATGACCAGTTCTTCCTAGGCCGCATTGAACCTAATAAAAGAAAATACA M R P K M T S S S - A A L N L I K E N T C A Q R - P V L P R P H - T - - K K I Q H A P K D D Q F F L G R I E P N K R K Y . 118333 AGTAAAAGC S K S V K K - K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0197J17.1+_PGL-18_AGS-1_PPS_1 (118021 118215) (frame '1'; 192 bp, 64 residues) 1 FLNQQFLEIL TFLCDTGKET WSGDLVQHSN CSVANKGTTS KGATMIPIID GSSNSFSYQH 61 CPNR- ... finished at: Tue Aug 29 00:05:17 2006