GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 22:25:11 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 34829 Total sequence length: 35392868 Minimum sequence length: 63 Maximum sequence length: 5381 Length distribution (number of sequences of specified length): < 100: 4 < 200: 53 < 300: 143 < 400: 353 < 500: 791 < 600: 1674 < 700: 2583 < 800: 4023 < 900: 6481 < 1000: 5706 >=1000: 13018 Input file : /tmp/bac-submission-temp-xrv5l/C08HBa0320P23/C08HBa0320P23.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0320P23.1, from 1 to 88562, both strands analyzed. ... started at: Mon Aug 28 22:35:20 2006 EST library file: /tmp/cxgn-bacpublish-resources-bBhdzx/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 13 EST library file: /tmp/cxgn-bacpublish-resources-bBhdzx/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 18 ******************************************************************************** EST sequence 11 +strand 883 n (File: SGN-U337363+) 1 GAGGAAGATC CTATAGGGCG ATTGGGTACC GGGCCCCCCC TCGAGTTTTT TTTTTTTTTT 61 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT AAAAAAAAGT AACTACCCTT TTATTATTTA 121 TCACAATCAT TCAATAACCA AAAAAAAAAA AAAAATTAGG GAGAAAAAAG GGAAAATATT 181 ATTATGGATC AGGGGAAAAA GCTTTACGTT CTTGGCGCTG GCTCTTACGG CAAAGTTTAT 241 TATGCAGGGA AAAGGGATCC GGTTTCGTTA TGGGTTTCTG TTGCGGCTGT TAAATGGGCT 301 GATATGAACC GTTCTGTTTC ACTCCAACGA AAAGCAAAAA TCTTGACAAC CCTCAAAAAT 361 TCCCCTTACG GGGTTCAGTT CATTGGATCA AACGTTAGCA TCGATAACGG TAATGTCCCA 421 ACTTACAATC TGTTTCTTGA GTATGCATAT GGGGGATCCC TACCCAATTT GATCATTAAT 481 TCAAAAATGA AAAGGATACG GATGTCTGAA GTGGAAGGAG GGGGCGATGC ATATCAACTC 541 TTAAAGGGTA TTCCACCCGT TCATGAAAAA GGGTGGGTTC ATTGGGAAAT TAAACCTGCC 601 AATGTTTTGA TTTTCCACAA CCCTGAACGG GGGGGGGAAG CCCAATTTAA AGTTAGCTGA 661 CTCTGGATTG TCCTTGAAAA TTCCGAGAAG GGGGGGAATA AATACCGGGG GCTGCACAGA 721 ACAAAAAAGT GACGCCAGCC ATCCCCCCCC CCAAACATGT GCACTCCTGT GTCTCCGTTG 781 CGGCGGTTTG TAGCTCACAG ATCTCGTGCT AACACGGTGA GAGGGACGCT AACATGTCTC 841 GCGAAATGAC ACACAGTCTA GTGACGACGA TGAGTCTATA TCG Predicted gene structure (within gDNA segment 1 to 3986): Exon 1 1 552 ( 552 n); cDNA 199 753 ( 555 n); score: 0.867 MATCH C08HBa0320P23.1+ SGN-U337363+ 0.867 552 0.625 C PGS_C08HBa0320P23.1+_SGN-U337363+ (1 552) Alignment (genomic DNA sequence = upper lines): AAGCTTTACG TTCTTGGCGC TGGCTCTTAC GGCAAAGTTT ATTATGCAGT GAAGATGGAT 60 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||| | |||| AAGCTTTACG TTCTTGGCGC TGGCTCTTAC GGCAAAGTTT ATTATGCAGG GAAAAGGGAT 258 CCTGTTTCGT TATGTGTTTC TGTTGCTGCT GTTAAATGTG CTGATATGAA CCGTTCTGTT 120 || ||||||| |||| ||||| |||||| ||| |||||||| | |||||||||| |||||||||| CCGGTTTCGT TATGGGTTTC TGTTGCGGCT GTTAAATGGG CTGATATGAA CCGTTCTGTT 318 TCACTCCAAC GAGAAGCAGA AATCTTGACA ACCCTCAAAG ATTCACCTTA CGTGGTTCAG 180 |||||||||| || ||||| | |||||||||| ||||||||| |||| ||||| || ||||||| TCACTCCAAC GAAAAGCAAA AATCTTGACA ACCCTCAAAA ATTCCCCTTA CGGGGTTCAG 378 TTCATTGGAT CAGACGTTAG CATCGATAAC GGTAATGTCT CAACTTACAA TCTGTTTCTT 240 |||||||||| || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTCATTGGAT CAAACGTTAG CATCGATAAC GGTAATGTCC CAACTTACAA TCTGTTTCTT 438 GAGTATGCAT ATGGTGGATC GCTACACGAT TTGATCATTA ATTCGAAGAT GAGAAGGATA 300 |||||||||| |||| ||||| |||| | || |||||||||| |||| || || || ||||||| GAGTATGCAT ATGGGGGATC CCTACCCAAT TTGATCATTA ATTCAAAAAT GAAAAGGATA 498 CGGATGTCTG AAGTGGAAGT AGGTTTCTAT GCATATCAAC TCTTAAAGGG TATTCAACAC 360 |||||||||| ||||||||| ||| | || |||||||||| |||||||||| ||||| || | CGGATGTCTG AAGTGGAAGG AGGGGGCGAT GCATATCAAC TCTTAAAGGG TATTCCACCC 558 GTTCATGAGA AAGGGTGGGT TCATTGTGAT ATTAAACCTG CTAATGTTTT GATTTTCAAC 420 |||||||| | |||||||||| |||||| || |||||||||| | |||||||| ||||||| || GTTCATGAAA AAGGGTGGGT TCATTGGGAA ATTAAACCTG CCAATGTTTT GATTTTCCAC 618 AACGCTGAAC -GTGGTGGGA TGCACAAGTT AAAGTTGGCT GACTTTGGAT TGTCGTTGAG 479 ||| |||||| | || |||| || ||| || |||||| ||| |||| ||||| |||| |||| AACCCTGAAC GGGGGGGGGA AGCCCAATTT AAAGTTAGCT GACTCTGGAT TGTCCTTGAA 678 AGTTCC-CGA AGGTGTGGCA TATATGACTG GTGCTGCGAT GAGCAACAGA GGGACTCTA- 537 | |||| || ||| | || | || || | | | ||||| || ||| | | | ||| | | AATTCCGAGA AGGGGGGGAA TAAATACCGG GGGCTGCACA GAACAAAAAA GTGACGCCAG 738 CCTTACGCGC CCCCA 552 || | | | | ||||| CCATCCCCCC CCCCA 753 hqPGS_C08HBa0320P23.1+_SGN-U337363+ (1 552) ******************************************************************************** EST sequence 29 -strand 660 n (File: SGN-U321387-) 1 GTTAAATGTG CTGATATGAA CCGTTCTGTT TCACTCCAAC GAGAAGCAGA AATCTTGACA 61 ACCCTCAAAG ATTCACCTTA CGTGGTTCAG TTCATTGGAT CAGACGTTAG CATCGATAAC 121 GGTAATGTCT CAACTTACAA TCTGTTTCTT GAGTATGCAT ATGGTGGATC GCTACACGAT 181 TTGATCATTA ATTCGAAGAT GAGAAGGATA CGGATGTCTG AAGTGGAAGT AGGTTTCTAT 241 GCATATCAAC TCTTAAAGGG TATTCAACAC GTTCATGAGA AAGGGTGGGT TCATTGTGAT 301 ATTAAACCTG CTAATGTTTT GATTTTCAAC AACGCTGAAC GTGGTGGGAT GCACAAGTTA 361 AAGTTGGCTG ACTTTGGATT GTCGTTGAGA GTTCCCGAAG GTGTGGCATA TATGACTGGT 421 GCTGCGATGA GCAACAGAGG GACTCTACCT TACGCGCCCC CAGAATCTTT GATCAGTGGT 481 TTTCATGGCA GGAGTTATGA TATATGGTCG TTAGGGTGTA CTGTGGCAGA GATGATGACT 541 GGGTGTCGCG TTTGGATTTA TCGCGACACT AAGGATTTGC AATGGAAGAT TATGAATGAA 601 GAACCAATGG TTCCTAGTGA TGTTTCTGAG ATTGCCAGAG ATTTTTTGTA CAAGTGTTTG Predicted gene structure (within gDNA segment 1 to 1350): Exon 1 91 750 ( 660 n); cDNA 1 660 ( 660 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-U321387- 1.000 660 1.000 C PGS_C08HBa0320P23.1+_SGN-U321387- (91 750) Alignment (genomic DNA sequence = upper lines): GTTAAATGTG CTGATATGAA CCGTTCTGTT TCACTCCAAC GAGAAGCAGA AATCTTGACA 150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAAATGTG CTGATATGAA CCGTTCTGTT TCACTCCAAC GAGAAGCAGA AATCTTGACA 60 ACCCTCAAAG ATTCACCTTA CGTGGTTCAG TTCATTGGAT CAGACGTTAG CATCGATAAC 210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTCAAAG ATTCACCTTA CGTGGTTCAG TTCATTGGAT CAGACGTTAG CATCGATAAC 120 GGTAATGTCT CAACTTACAA TCTGTTTCTT GAGTATGCAT ATGGTGGATC GCTACACGAT 270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAATGTCT CAACTTACAA TCTGTTTCTT GAGTATGCAT ATGGTGGATC GCTACACGAT 180 TTGATCATTA ATTCGAAGAT GAGAAGGATA CGGATGTCTG AAGTGGAAGT AGGTTTCTAT 330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCATTA ATTCGAAGAT GAGAAGGATA CGGATGTCTG AAGTGGAAGT AGGTTTCTAT 240 GCATATCAAC TCTTAAAGGG TATTCAACAC GTTCATGAGA AAGGGTGGGT TCATTGTGAT 390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATATCAAC TCTTAAAGGG TATTCAACAC GTTCATGAGA AAGGGTGGGT TCATTGTGAT 300 ATTAAACCTG CTAATGTTTT GATTTTCAAC AACGCTGAAC GTGGTGGGAT GCACAAGTTA 450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAACCTG CTAATGTTTT GATTTTCAAC AACGCTGAAC GTGGTGGGAT GCACAAGTTA 360 AAGTTGGCTG ACTTTGGATT GTCGTTGAGA GTTCCCGAAG GTGTGGCATA TATGACTGGT 510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGGCTG ACTTTGGATT GTCGTTGAGA GTTCCCGAAG GTGTGGCATA TATGACTGGT 420 GCTGCGATGA GCAACAGAGG GACTCTACCT TACGCGCCCC CAGAATCTTT GATCAGTGGT 570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGATGA GCAACAGAGG GACTCTACCT TACGCGCCCC CAGAATCTTT GATCAGTGGT 480 TTTCATGGCA GGAGTTATGA TATATGGTCG TTAGGGTGTA CTGTGGCAGA GATGATGACT 630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATGGCA GGAGTTATGA TATATGGTCG TTAGGGTGTA CTGTGGCAGA GATGATGACT 540 GGGTGTCGCG TTTGGATTTA TCGCGACACT AAGGATTTGC AATGGAAGAT TATGAATGAA 690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGTCGCG TTTGGATTTA TCGCGACACT AAGGATTTGC AATGGAAGAT TATGAATGAA 600 GAACCAATGG TTCCTAGTGA TGTTTCTGAG ATTGCCAGAG ATTTTTTGTA CAAGTGTTTG 750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACCAATGG TTCCTAGTGA TGTTTCTGAG ATTGCCAGAG ATTTTTTGTA CAAGTGTTTG 660 hqPGS_C08HBa0320P23.1+_SGN-U321387- (91 750) ******************************************************************************** EST sequence 14 -strand 553 n (File: SGN-U332599-) 1 CGGTGCTACG AGTGATACAA ACTCCGAGAT TTCAACAAGG CCATTGTCGT TTTTATCCGC 61 CTTTTGAATC AAAGTTTTCG AGCTGATCAG GACTGGTTTT AAACCAAGAG ACCTCAATAG 121 CGCGCCAAGC TCGAGTTGGG TTAGACTCCC ATCATCATTT CTGTCGAACG ATCGGAAAAT 181 TTCTCGCAGT TCAGCCAACT GCTCATCATC TAACTTAACA GGTGCTTTAT TGCTCATATT 241 TCTCTGTGAA GCAATAAATC AAACACTTGA TCTGCAGATT AAAATTGTCC TTCAAAGAAA 301 GAATATCAAT GGATACCCTT TTCCAACCAA CTGGGTACTC TGTTTTCCTG CTATTCGTGC 361 CGTCCTCTTT CTCTTGCTGT TCTACTGACC TTTTGACTAC TCTTTGCTCA ATTTTGTGTC 421 ACTTTCGAAT AGCTATTTTT CTTGGACTTG GTAATGGATC CACCAAATTC TATGAATTTG 481 TTGAATTACA AGGAAAAGTT ATACAGATTT GTAGAATTGA TATTGAAAGA AAATATTGAC 541 AACTTCTTCC CAA Predicted gene structure (within gDNA segment 1700 to 3462): Exon 1 2310 2862 ( 553 n); cDNA 1 553 ( 553 n); score: 0.992 MATCH C08HBa0320P23.1+ SGN-U332599- 0.992 553 1.000 C PGS_C08HBa0320P23.1+_SGN-U332599- (2310 2862) Alignment (genomic DNA sequence = upper lines): CGGTGCTACG AGTGATACAA ACTCCGAGAA TTCAACAAGG CCATTGTCGT TTTTATCCGC 2369 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CGGTGCTACG AGTGATACAA ACTCCGAGAT TTCAACAAGG CCATTGTCGT TTTTATCCGC 60 CTTTTGAATC AAAGTTT-CG AGCTGATCAG GACTTGGTTT TAAACCAAGA GACCTCAATA 2428 |||||||||| ||||||| || |||||||||| ||| |||||| |||||||||| |||||||||| CTTTTGAATC AAAGTTTTCG AGCTGATCAG GAC-TGGTTT TAAACCAAGA GACCTCAATA 119 GCGCGCCAAG CTCGAGTTGG GTTAGACTCC CATCATCATT TCTGTCGAAC GATCGGAAAA 2488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCGCCAAG CTCGAGTTGG GTTAGACTCC CATCATCATT TCTGTCGAAC GATCGGAAAA 179 TTTCTCGCAG TTCAGCCAAC TGCTCATCAT CTAACTTAAC AGGTGCTTTA TTGCTCATAT 2548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCGCAG TTCAGCCAAC TGCTCATCAT CTAACTTAAC AGGTGCTTTA TTGCTCATAT 239 TTCTCTGTGA AGCAATAAAT CAAACACTTG ATCTGCAGAT TAAAATTGTC CTTCAAAGAA 2608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTGTGA AGCAATAAAT CAAACACTTG ATCTGCAGAT TAAAATTGTC CTTCAAAGAA 299 AGAATATCAA TGGATACCCT TTTCCAACCA ACTGGGTACT CTGTTTTCCT GCTATTCGTG 2668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATATCAA TGGATACCCT TTTCCAACCA ACTGGGTACT CTGTTTTCCT GCTATTCGTG 359 CCGTCCTCTT TCTCTTGCTG TTCTACTGAC CTTTTGACTA CTCTTTGCTC AATTTTGTGT 2728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTCCTCTT TCTCTTGCTG TTCTACTGAC CTTTTGACTA CTCTTTGCTC AATTTTGTGT 419 CACTTTCGAA TAGCTATTTT TCTTGGACTT GGTAATGGAT CCACCAAATT CTATGAATTT 2788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTCGAA TAGCTATTTT TCTTGGACTT GGTAATGGAT CCACCAAATT CTATGAATTT 479 GTTGAATTAC AAGGAAAAGT TATACAGATT TGTAGAATTG ATATTGAAAG AAAATATTGA 2848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAATTAC AAGGAAAAGT TATACAGATT TGTAGAATTG ATATTGAAAG AAAATATTGA 539 CAACTTCTTC CCAA 2862 |||||||||| |||| CAACTTCTTC CCAA 553 hqPGS_C08HBa0320P23.1+_SGN-U332599- (2310 2862) ******************************************************************************** EST sequence 22 +strand 1498 n (File: SGN-U316479+) 1 GCACGAGATA AAACCGAAGG TCTCAAATCA CCGTCGACAA CCACCGCTTC CGCCGCCATT 61 TCCACGGTTA CACCGCCGGA GGACGTCCGT TTCCAAAAGT AATTAAATAT GTCCACTCTC 121 TACAATCCTC TAATTTTCAC CATTAAAAAC CCAAAAGGCA GCCTTAAACC TCACACTTCC 181 CTTCCTTCTT CTGTCCCGAC TTTTAGGCTT CGTAAATTTC AAAATTTCTC AGTTCAATCC 241 TCCATTTCCT CATCCAATGA GCCGGAAAAA CCCACCTCTA TTACACCGGA TAATGATAAA 301 GCTGACGATA AAATGGTCGA GTTCGTGGAT GAATGGGGAG AGAAGTCGGA GCCCGAACCC 361 GGACCGGTTA CGAAGTTAGC GGATTCGGAT CCTCCGGAGT ATGATGATGA GTGGGGTAAT 421 GGAAGTCCCG GAGTTGACGT GAGTGGTGAA GAGGACGAGA AGCTTCTAGA GCTGAAAAGG 481 TGTTTGGTGG ATACAGTTTA TGGGACGGAT TTCGGATTTC GGGCTTCATC AGAGATTCGG 541 GCCGAGGCAT TGGAGTTCGT TTGTCAGTTG GAGGCAGCCA ATCCTTCTCC AGCACCAACT 601 GAGTCTCCTG AGTTGCTTGA TGGGAACTGG ATTTTAGTGT TCACTGCATT TTCCGAGTTG 661 TTACCTCTTC TTGCTGTGGG TAACATTCCT CTGTTGAAGG TAGAAAAGAT TAGCCAAGAC 721 GTAAATACAA ACAGCTCGAC TATAGAGAAT GCGACTACAT TATCAAGCCC TGTAGCCACC 781 TTGTCCTTTA GTGCTACTGC CACTTTTGAA GTTCGAAGCC CCTCTAGAAT ACAGGTTGAA 841 TTCAAGGAAG GGAATTTTAA ACCTCCAGAA ATAAAATCGA ACATAAATCT GCCGGAAACT 901 GTGGATTTGT TTGGGCAAAA GATAAGTCTC TCTCCTGTAC AGCAATCTCT AGGTCCTCTG 961 GAAAACGCTG TGGCAGGCAT AGCACGAACT ATTTCTGGTC AGCCTCCTCT CAAGATCCCA 1021 ATTCCAGGTG GAAGGACAAA ATCCTGGCTT CTCACAACCT ACCTTGATAA GGATATGCGG 1081 ATCTCCAGAG GCGATGGTGG GCTTTTTGTG CTTGTTAAGG AAGGGAGTTC TCTTCTATAT 1141 TAGTAAGGTA TCCATTATCC TATATTGTGA TTTACAAATG TCTTAGGAAC TGCAATGGTA 1201 TGTACTGCTA CATCGATTTA TCGCGGGATG TAGAGTTTAA AACTCCTTAG CTGTAAGGTG 1261 GGACACTCTT TTAGGACTCA AGTACTTGCA CTGAATTATC TCAGGATCAA GCTGTGAGAT 1321 TAGTCCTAGT AAGAAGTGTG CTGAAATAAA ATGTGATATA GCTTTGCATT TTCCTATGTA 1381 GTAAGATAAC GATGTTTCAG TAATTTGGAG GTCAATCATC TGTAATTTCA GCTTATCTGG 1441 AAAGAAAATA ACTTAACAAT TACGTTTAAT CTAAAAAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 10414 to 5614): Exon 1 9744 9114 ( 631 n); cDNA 8 638 ( 631 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 7521 7326 ( 196 n); cDNA 639 834 ( 196 n); score: 1.000 Intron 2 7325 7113 ( 213 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 7112 6474 ( 639 n); cDNA 835 1473 ( 639 n); score: 1.000 PPA cDNA 1474 1498 MATCH C08HBa0320P23.1- SGN-U316479+ 1.000 1466 0.979 C PGS_C08HBa0320P23.1-_SGN-U316479+ (9744 9114,7521 7326,7112 6474) Alignment (genomic DNA sequence = upper lines): ATAAAACCGA AGGTCTCAAA TCACCGTCGA CAACCACCGC TTCCGCCGCC ATTTCCACGG 9685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAACCGA AGGTCTCAAA TCACCGTCGA CAACCACCGC TTCCGCCGCC ATTTCCACGG 67 TTACACCGCC GGAGGACGTC CGTTTCCAAA AGTAATTAAA TATGTCCACT CTCTACAATC 9625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACACCGCC GGAGGACGTC CGTTTCCAAA AGTAATTAAA TATGTCCACT CTCTACAATC 127 CTCTAATTTT CACCATTAAA AACCCAAAAG GCAGCCTTAA ACCTCACACT TCCCTTCCTT 9565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTAATTTT CACCATTAAA AACCCAAAAG GCAGCCTTAA ACCTCACACT TCCCTTCCTT 187 CTTCTGTCCC GACTTTTAGG CTTCGTAAAT TTCAAAATTT CTCAGTTCAA TCCTCCATTT 9505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGTCCC GACTTTTAGG CTTCGTAAAT TTCAAAATTT CTCAGTTCAA TCCTCCATTT 247 CCTCATCCAA TGAGCCGGAA AAACCCACCT CTATTACACC GGATAATGAT AAAGCTGACG 9445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCATCCAA TGAGCCGGAA AAACCCACCT CTATTACACC GGATAATGAT AAAGCTGACG 307 ATAAAATGGT CGAGTTCGTG GATGAATGGG GAGAGAAGTC GGAGCCCGAA CCCGGACCGG 9385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAATGGT CGAGTTCGTG GATGAATGGG GAGAGAAGTC GGAGCCCGAA CCCGGACCGG 367 TTACGAAGTT AGCGGATTCG GATCCTCCGG AGTATGATGA TGAGTGGGGT AATGGAAGTC 9325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACGAAGTT AGCGGATTCG GATCCTCCGG AGTATGATGA TGAGTGGGGT AATGGAAGTC 427 CCGGAGTTGA CGTGAGTGGT GAAGAGGACG AGAAGCTTCT AGAGCTGAAA AGGTGTTTGG 9265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAGTTGA CGTGAGTGGT GAAGAGGACG AGAAGCTTCT AGAGCTGAAA AGGTGTTTGG 487 TGGATACAGT TTATGGGACG GATTTCGGAT TTCGGGCTTC ATCAGAGATT CGGGCCGAGG 9205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATACAGT TTATGGGACG GATTTCGGAT TTCGGGCTTC ATCAGAGATT CGGGCCGAGG 547 CATTGGAGTT CGTTTGTCAG TTGGAGGCAG CCAATCCTTC TCCAGCACCA ACTGAGTCTC 9145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGGAGTT CGTTTGTCAG TTGGAGGCAG CCAATCCTTC TCCAGCACCA ACTGAGTCTC 607 CTGAGTTGCT TGATGGGAAC TGGATTTTAG TGTGAGTTTT TTTGCTTCAT TGCTGGATCA 9085 |||||||||| |||||||||| |||||||||| | CTGAGTTGCT TGATGGGAAC TGGATTTTAG T......... .......... .......... 638 TTCAGTCACT TCTTTTACTA TAGTTCCTCC ATTTATTACG TTTTGTGTTG TTTTTATATG 9025 .......... .......... .......... .......... .......... .......... 638 AAACTAGCTG AGTTTTGATA TCTTCTGCAA GCGTGCTGGC TTTGGTTCGG AAAAAATGGG 8965 .......... .......... .......... .......... .......... .......... 638 TGGTTTACAC TTTACAGGAC AAACCAAATA ACAATCTCTA ATAAATTGAT ATTGATCTCA 8905 .......... .......... .......... .......... .......... .......... 638 CGGGGCTTAT ATTTAAGGTT AATGGGTAGT TTCAGATAAT CAAATGACTT TGATTTCATT 8845 .......... .......... .......... .......... .......... .......... 638 ATCTATGGGT TAAGGCATTG ATAGAATGGG TACTGGTATG CTTATCTTGA GCATTGACAC 8785 .......... .......... .......... .......... .......... .......... 638 CACAGAACAA GTTGCTCTCC CTAATTCTAG GTGCATGATA GAAGTTAATC GTACAATGTA 8725 .......... .......... .......... .......... .......... .......... 638 GGCATTGCAC CCAAAGCAGT AGCTAGAACT TTATGATGGG AGTTCACTAT GCAAGATAGG 8665 .......... .......... .......... .......... .......... .......... 638 TGCATCATAA CAGTTATAAG AGGGATCTCG AGATTGGCCT CTAAATAAGC ACCTTATGAG 8605 .......... .......... .......... .......... .......... .......... 638 TTGAGCGGTC AGACGGTTAC TTGTCAATAT ACTTGCATTC GGCTGTATCC TCCAGTTGTT 8545 .......... .......... .......... .......... .......... .......... 638 AACAACCATA ATTAAAGACC ATGTATCTTT GTTTGTCCTG TAATAACATG CTTTGGATTT 8485 .......... .......... .......... .......... .......... .......... 638 CCGAGAATTT CATAAACTAA TTAGCCTGGT AATCTGGGAA TAGGACGAAC CAATGCTTCT 8425 .......... .......... .......... .......... .......... .......... 638 TGGATTATTT TAATCTTGAT GCCATGTATT TTCAACTAAG TATTGCACTT TCTTCACATC 8365 .......... .......... .......... .......... .......... .......... 638 GCAACTACCA TTAATCTAAT CTAAACAATT GTCTGCAAAC TTTAATGTGA AATGTATTTT 8305 .......... .......... .......... .......... .......... .......... 638 GTTTTTCCTT CATACCCTTT TGGCTAGTCA AACTAGAATC TATTCAAGAG TGCAACAAGA 8245 .......... .......... .......... .......... .......... .......... 638 AAATTGTTGT AGTTACTGGA GCTTGAGCTC ATGATTCATA TTCATTCTAT GGTTCACATA 8185 .......... .......... .......... .......... .......... .......... 638 TCACAGAAGA AAACCTGAAG GCTGAAGATT GTTGTTGTTA TTATTATGTC TTTGGTTTTA 8125 .......... .......... .......... .......... .......... .......... 638 CTGGGAAAGT CGAGTTTTAG TAAGTACTGT AATTTTAAAT GCTTGGAAGT GGTGATAGAC 8065 .......... .......... .......... .......... .......... .......... 638 TGTTTTTAAT AGTTCTGAAG TACAATTTTA TAGGATTAAA TCTATGAACT TAAAATCGAT 8005 .......... .......... .......... .......... .......... .......... 638 GACATTTACT ATCTTGGTTC ACATATCACA TAAAAAACCC TGAAGGCTTA AGATATGCCT 7945 .......... .......... .......... .......... .......... .......... 638 TGTAAAGCTA TATTTATAGT TGATATCCTG TTCAGGGTTT ATTCGTCTAT AACATAGAGT 7885 .......... .......... .......... .......... .......... .......... 638 AGGAAAATGT CATTGAGGCA TAAATGTTGA TGATACTTGC TGTGTGCTAT GCATTATTAA 7825 .......... .......... .......... .......... .......... .......... 638 AAGTTTATTT CTTCATAAGT TTATTTTTAA AGATTTTTGG TTGAACACAT CGACAACACC 7765 .......... .......... .......... .......... .......... .......... 638 TTAAAATATG TTATCTCCTT CAATTATACA CAATAGTCTT AATAAGCCGT CAGGCCTATT 7705 .......... .......... .......... .......... .......... .......... 638 CGATGTCGAT GTATATGAAT AAAGGGATGA TTTGTAACTT AGCCCAATCT TAAGGGACAA 7645 .......... .......... .......... .......... .......... .......... 638 TTTTGGGCTT TTCCTCCTGA ACATTGTAAC TTTAGTTGTG AAATTTCATG CAGAAACTGA 7585 .......... .......... .......... .......... .......... .......... 638 TTTGAAGTAA ATGATAAGTG ATGTATCAGC AAAGAATCTT ATTTTTCTTC CTCAATCTGT 7525 .......... .......... .......... .......... .......... .......... 638 CAGGTTCACT GCATTTTCCG AGTTGTTACC TCTTCTTGCT GTGGGTAACA TTCCTCTGTT 7465 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTTCACT GCATTTTCCG AGTTGTTACC TCTTCTTGCT GTGGGTAACA TTCCTCTGTT 695 GAAGGTAGAA AAGATTAGCC AAGACGTAAA TACAAACAGC TCGACTATAG AGAATGCGAC 7405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGTAGAA AAGATTAGCC AAGACGTAAA TACAAACAGC TCGACTATAG AGAATGCGAC 755 TACATTATCA AGCCCTGTAG CCACCTTGTC CTTTAGTGCT ACTGCCACTT TTGAAGTTCG 7345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTATCA AGCCCTGTAG CCACCTTGTC CTTTAGTGCT ACTGCCACTT TTGAAGTTCG 815 AAGCCCCTCT AGAATACAGG TATACTCGTT GACTCCATTC TGATTTCCTT AGAAAGGTAC 7285 |||||||||| ||||||||| AAGCCCCTCT AGAATACAG. .......... .......... .......... .......... 834 TTGCAGCAAT TTTCTGCACA AAGAGAGAAA ATGAGAATTT TGGATCTAAT TATGCAAGAT 7225 .......... .......... .......... .......... .......... .......... 834 ATTGAGAAAT TGTAGGGGTC GATTATGTTT TTTTGGTTAA CTTCTGTAGA GTATGTTGGG 7165 .......... .......... .......... .......... .......... .......... 834 AGTTTTTTAA TTTTTCCTTC CGCATTTGGC TGACAACTGC TTACTTTTGC AGGTTGAATT 7105 |||||||| .......... .......... .......... .......... .......... ..GTTGAATT 842 CAAGGAAGGG AATTTTAAAC CTCCAGAAAT AAAATCGAAC ATAAATCTGC CGGAAACTGT 7045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAAGGG AATTTTAAAC CTCCAGAAAT AAAATCGAAC ATAAATCTGC CGGAAACTGT 902 GGATTTGTTT GGGCAAAAGA TAAGTCTCTC TCCTGTACAG CAATCTCTAG GTCCTCTGGA 6985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTTGTTT GGGCAAAAGA TAAGTCTCTC TCCTGTACAG CAATCTCTAG GTCCTCTGGA 962 AAACGCTGTG GCAGGCATAG CACGAACTAT TTCTGGTCAG CCTCCTCTCA AGATCCCAAT 6925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACGCTGTG GCAGGCATAG CACGAACTAT TTCTGGTCAG CCTCCTCTCA AGATCCCAAT 1022 TCCAGGTGGA AGGACAAAAT CCTGGCTTCT CACAACCTAC CTTGATAAGG ATATGCGGAT 6865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGTGGA AGGACAAAAT CCTGGCTTCT CACAACCTAC CTTGATAAGG ATATGCGGAT 1082 CTCCAGAGGC GATGGTGGGC TTTTTGTGCT TGTTAAGGAA GGGAGTTCTC TTCTATATTA 6805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCAGAGGC GATGGTGGGC TTTTTGTGCT TGTTAAGGAA GGGAGTTCTC TTCTATATTA 1142 GTAAGGTATC CATTATCCTA TATTGTGATT TACAAATGTC TTAGGAACTG CAATGGTATG 6745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGGTATC CATTATCCTA TATTGTGATT TACAAATGTC TTAGGAACTG CAATGGTATG 1202 TACTGCTACA TCGATTTATC GCGGGATGTA GAGTTTAAAA CTCCTTAGCT GTAAGGTGGG 6685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGCTACA TCGATTTATC GCGGGATGTA GAGTTTAAAA CTCCTTAGCT GTAAGGTGGG 1262 ACACTCTTTT AGGACTCAAG TACTTGCACT GAATTATCTC AGGATCAAGC TGTGAGATTA 6625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTCTTTT AGGACTCAAG TACTTGCACT GAATTATCTC AGGATCAAGC TGTGAGATTA 1322 GTCCTAGTAA GAAGTGTGCT GAAATAAAAT GTGATATAGC TTTGCATTTT CCTATGTAGT 6565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTAGTAA GAAGTGTGCT GAAATAAAAT GTGATATAGC TTTGCATTTT CCTATGTAGT 1382 AAGATAACGA TGTTTCAGTA ATTTGGAGGT CAATCATCTG TAATTTCAGC TTATCTGGAA 6505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATAACGA TGTTTCAGTA ATTTGGAGGT CAATCATCTG TAATTTCAGC TTATCTGGAA 1442 AGAAAATAAC TTAACAATTA CGTTTAATCT A 6474 |||||||||| |||||||||| |||||||||| | AGAAAATAAC TTAACAATTA CGTTTAATCT A 1473 hqPGS_C08HBa0320P23.1-_SGN-U316479+ (9744 9114,7521 7326,7112 6474) ******************************************************************************** EST sequence 23 +strand 1954 n (File: SGN-U318148+) 1 AAAGCACGTG CTCCCGTTCC TGATAAAACA CTCTCTCTCC CTCGCAACAC ACGCACATAT 61 TCATTTCACT CCTCACTTTC TTTCTCTCTC TAAACCTCTC CATTCTGTGG TGGTGATGTC 121 GATCCTCTCA GCGGCTTCTC TTCTTCTTCT TCTTCCTCCT TCATGCTTTC TTCCGCTTCG 181 TCTTCTTCTG CACGCATTCC GAGGCCGTTA TCTTCATTTT CAACTTGTGT ACCAGTAGTA 241 GTAACAACTG TTTCTTCTGC AGCAACTTCG ACGCTATTCC CGATTTCCTG TTTCGGTGTG 301 AAATCGAGGA CGGTTGGGAT TCGGAAGCTA CGGTGTGCCG TTTTTTGTGC TTCGAAGGTA 361 CGTGGAATGG CAGAAATGAT TGAAGATGCC ATGACAGTTT CTGCTTCTGA GAGTCATGAG 421 CTTCCGCAGT CCCGAGACTT CCTTGACGCA CGCACTGGAG AAGACTTGCT ATCTGCTGTT 481 CGAAAAGCTG TGGAAGATGA AAAACTGCCA CTGAATGTTG CTGAAGGAAT GGAGGAGTTG 541 TATCAGAACT ATCAGAATGC AGTTTTACAA AGCGGCGTTC CCAAAGCAGA TGAGGCCATT 601 TTGTATAACA TGGCTCTTGT ATTCGACCGT GTTTTTGTGG ATGTGAAGGA TCCTTTTGAA 661 TTCTCGCCGT ATCATAAGGC CATTCGTGAA CCTTTTGACT ATTACAAGTT TGGTCAAAAT 721 TATATCCGCC AGCTAGTTGA TTTCAGGAGC TCTTATGTTG GGAATATGTC AGTTTTCAGT 781 GAAATGGCAG AGAAGCTTAA ACAGGGTGAT AATGTTGTCT TGATGTCAAA TCATCAAAGT 841 GAAGCCGATC CTGCGATTAT TGCACTCTTG ATTGAATCAA AGCTCCCAGA TATCGCTGAG 901 AACATTATAT ATGTTGCTGG AGATAGAGTT ATTACTGATC CTCTTTGCAA GCCATTCAGC 961 ATGGGAAGGA ATCTCCTGTG TGTTTATTCG AAAAAACATA TGAATGATGA CCCCGAACTT 1021 GCTGAGATGA AAAAGAGAGC AAACACAAGA AGCTTGAAGG AGATGGCTTT GCTATTGAGG 1081 GGTGGATCAA AAATAATATG GATTGCTCCT AGTGGTGGAA GAGATAGGCC AGACCCTGTT 1141 ACAAAAGAAT GGTATCCAGC ACCATTTGAT GCTTCCGCGA CAGACAACAT GAGGAGGCTT 1201 GTACAACATG CTGGTGTCCC TGGTCACATT TATCCTCTAG CAATATTGTG CCATGATATT 1261 ATGCCCCCTC CCGCCCAGGT TGAGAAAAAT ATCGGAGAGA AAAGAGTTGT ATCTTTTCAT 1321 GGAGCTGGCA TATCTGTGGC ACCCAAAATT GATTTTCATG AGGTTGCTGG TGCTTTGGAG 1381 GACCCTGAGG CTAAGATGGT ATATACAAAG GCAATTTATG ATTCTGTAAG CCAGCAGTAT 1441 AATGTGCTAA ATTCTGCTAT ACATGGCAAA CAAGGACTGG AGGCTTCAAT ACCTAGTGTT 1501 TCATTGTCAC AACCATGGCA GTAGCTTCTC TTCCAACTTT ATTTTTCATA CCTTGTTGCT 1561 GTAGTCAGTT TTGCAGATGT TTGTTTGGCA GTTACTATCA AATCACAAGG ATTACACTCA 1621 CAATCTTTCC ACATACCACG CTTGCATGTG GTTAGTCTCT GCGGAAAGTT GATACAAACA 1681 AAGTAATTCT TGAAGTTACA GCAAACATAA TCTGAAGGAT TTTTTTTTGG CAGGGTTAGA 1741 TGATTCTTTT GACACGAATG TACAGTTGCT TTACATTGTA TTTGTATCAA ATGTTAGATT 1801 CAAATTTGTT AGTAATGATA GCTTTCAAGT ACTGTTATGA CTTTCTAAGG TTTAGTGTTA 1861 GTAGCTATTC TAGATTGCTG CTCATCTTAC CTTTGAAGTG GTAATCCAAT TTGTTGGGAA 1921 ATATAATATT TGATGCTCTG CTAAAAAAAA AAAA Predicted gene structure (within gDNA segment 24560 to 9864): Exon 1 23832 23359 ( 474 n); cDNA 1 463 ( 463 n); score: 0.941 Intron 1 23358 19641 (3718 n); Pd: 1.000 (s: 1.00), Pa: 0.886 (s: 1.00) Exon 2 19640 19543 ( 98 n); cDNA 464 561 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 18512 18426 ( 87 n); cDNA 562 648 ( 87 n); score: 1.000 Intron 3 18425 18280 ( 146 n); Pd: 0.900 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 18279 18182 ( 98 n); cDNA 649 746 ( 98 n); score: 1.000 Intron 4 18181 16486 (1696 n); Pd: 0.998 (s: 1.00), Pa: 0.616 (s: 1.00) Exon 5 16485 16428 ( 58 n); cDNA 747 804 ( 58 n); score: 1.000 Intron 5 16427 15118 (1310 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 15117 15016 ( 102 n); cDNA 805 906 ( 102 n); score: 0.990 Intron 6 15015 14928 ( 88 n); Pd: 0.991 (s: 0.98), Pa: 0.979 (s: 1.00) Exon 7 14927 14866 ( 62 n); cDNA 907 968 ( 62 n); score: 1.000 Intron 7 14865 14788 ( 78 n); Pd: 0.025 (s: 1.00), Pa: 0.729 (s: 1.00) Exon 8 14787 14677 ( 111 n); cDNA 969 1079 ( 111 n); score: 1.000 Intron 8 14676 14048 ( 629 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 9 14047 13969 ( 79 n); cDNA 1080 1158 ( 79 n); score: 1.000 Intron 9 13968 12803 (1166 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 10 12802 12683 ( 120 n); cDNA 1159 1278 ( 120 n); score: 1.000 Intron 10 12682 12608 ( 75 n); Pd: 0.979 (s: 1.00), Pa: 0.928 (s: 1.00) Exon 11 12607 12497 ( 111 n); cDNA 1279 1389 ( 111 n); score: 1.000 Intron 11 12496 11241 (1256 n); Pd: 0.994 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 12 11240 11062 ( 179 n); cDNA 1390 1568 ( 179 n); score: 1.000 Intron 12 11061 10959 ( 103 n); Pd: 0.959 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 13 10958 10584 ( 375 n); cDNA 1569 1943 ( 375 n); score: 1.000 PPA cDNA 1944 1954 MATCH C08HBa0320P23.1- SGN-U318148+ 0.985 1954 1.000 C PGS_C08HBa0320P23.1-_SGN-U318148+ (23832 23359,19640 19543,18512 18426,18279 18182,16485 16428,15117 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10584) Alignment (genomic DNA sequence = upper lines): AAAGCACGTG CT--CGTTCC TGATAAAACA CTCTCTCTCC CTCAC-A-AC ACGCATATAT 23777 |||||||||| || |||||| |||||||||| |||||||||| ||| | | || ||||| |||| AAAGCACGTG CTCCCGTTCC TGATAAAACA CTCTCTCTCC CTCGCAACAC ACGCACATAT 60 TCATTTCACT CCTCACTTTT TTTCTCGACC CTTTCTCTCT CTAAACCTCT CCATTCTGTG 23717 |||||||||| |||||| || | |||||||||| |||||||||| |||||||||| TCATTTCACT CCTCAC---- -TT-T----- CTTTCTCTCT CTAAACCTCT CCATTCTGTG 109 GTGGTGATGT TGATCCTCTC AGCGGCTTCG TCTTCTTCTT CTTCTTCTTC CTCCTTCATG 23657 |||||||||| ||||||||| |||||| | || ||||||| |||||||||| |||||||||| GTGGTGATGT CGATCCTCTC AGCGGC-T-- TC-TCTTCTT CTTCTTCTTC CTCCTTCATG 165 CTTTCTTCCG CTTCGTCTTC TTCTGCACGC ATTCCGAGGC CGTTATCTTC ATTTTCAACT 23597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTTCCG CTTCGTCTTC TTCTGCACGC ATTCCGAGGC CGTTATCTTC ATTTTCAACT 225 TGTGTACCAG TAGTAGTAAC AACTGTTTCT TCTGCAGCAA CTTCGACGCT ATTCCCGATT 23537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTACCAG TAGTAGTAAC AACTGTTTCT TCTGCAGCAA CTTCGACGCT ATTCCCGATT 285 TCCTGTTTCG GTGTGAAATC GAGGACGGTT GGGATTCGGA AGCTACGGTG TGCCGTTTTT 23477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTGTTTCG GTGTGAAATC GAGGACGGTT GGGATTCGGA AGCTACGGTG TGCCGTTTTT 345 TGTGCTTCGA AGGTACGTGG AATGGCAGAA ATGATTGAAG ATGCCATGAC AGTTTCTGCT 23417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCTTCGA AGGTACGTGG AATGGCAGAA ATGATTGAAG ATGCCATGAC AGTTTCTGCT 405 TCTGAGAGTC ATGAGCTTCC GCAGTCCCGA GACTTCCTTG ACGCACGCAC TGGAGAAGGT 23357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TCTGAGAGTC ATGAGCTTCC GCAGTCCCGA GACTTCCTTG ACGCACGCAC TGGAGAAG.. 463 TTATCTCTAG CTATTATTAC TTTTTCTTTA ATTTGAAATA TCTTGTGCAT TTTTTGCTTT 23297 .......... .......... .......... .......... .......... .......... 463 CTATTGCTAC TTTCGCTTTT TTCATTTTTG AATTTGAAGT ATCTTGTGCA TTTTGTGCTA 23237 .......... .......... .......... .......... .......... .......... 463 TTTTCGTGCG GTTTGTTACT CTTGTTCTCT GTTGGAATAT CTTGTGCTAT TTCGGTGGGG 23177 .......... .......... .......... .......... .......... .......... 463 TTTAACATTT TGTGCGTATT ATGCCAGAGA CTGTTGTACA CATTCACGCT ACAATGTTTG 23117 .......... .......... .......... .......... .......... .......... 463 TTTTCTTTCG AATGCATTGA ATTTCTCAAT ATTCTTCACA ATTAACAATG CTGAACATAT 23057 .......... .......... .......... .......... .......... .......... 463 GAGGCGCGTT ATTACATTTG CAGAAGTGCA TTTATTTTTT GTTAATTTGC CCTATGCTTG 22997 .......... .......... .......... .......... .......... .......... 463 TTGCTCTGAA GAAAATGTGT TGAGCCCATA GTTAAATTGA ACTAATATTG CATTTAGCAT 22937 .......... .......... .......... .......... .......... .......... 463 GGAGTTAACT GTGAATTTTG TCAAGTAATA ATTTCTTTGC CACATAAACT ATTGAACTCT 22877 .......... .......... .......... .......... .......... .......... 463 ATGTCCATGG TGAAATTAAA CATCGTTATC TAATGTTGTC TACTCTTTGG TTTTTCCTAT 22817 .......... .......... .......... .......... .......... .......... 463 AAGTCCTATC AAATAGACTT GTAGTACATC AGTTCCATTC TAGGAGATGA ATTGGTTGGT 22757 .......... .......... .......... .......... .......... .......... 463 TGCAATAGCA GTTTCAGTAG TGGTATTAAT GAAATTGGTG TTGGCATAAG GTTGCAATAA 22697 .......... .......... .......... .......... .......... .......... 463 GAGTACTTAT CTGTGCAAGC ATGCTTAACA GTTTAAACAT CAAGTCAATG AGTTCTTTTA 22637 .......... .......... .......... .......... .......... .......... 463 ACCTTGATGC ACCGGGTATA GTATGTTTTG ATCTTTCTAG TAATCTATGG TGATATCTAT 22577 .......... .......... .......... .......... .......... .......... 463 TAGGACGGAC TTACAGTAAG CTCAACGATT GTTTTATTTT TAACGGTGAA CTGGATGTAT 22517 .......... .......... .......... .......... .......... .......... 463 TGTCTATGAA GCACGTCAGT TGGCTTTGTT GGGTCTAACT TTATAAGGGA CTTCTCGAAT 22457 .......... .......... .......... .......... .......... .......... 463 GGATAGTTAG CAGAACTACA CTTGAGGAAT GGTGCTACTA TAATGTAACA CCAATCCATC 22397 .......... .......... .......... .......... .......... .......... 463 TTGATGGAAG TTCTCGTTAA CCTGTGGATG GTGAAGGACT CGACAAATTT ATAGTGGATG 22337 .......... .......... .......... .......... .......... .......... 463 GGATGATGGG AATGATATCA ATTGAAGAGT AAGGTGAAAT GATTAGGAGG TGGAAGATCT 22277 .......... .......... .......... .......... .......... .......... 463 TGTTATGAAC ACCAAATCAA ACAGGCAGAC AAGCAACAGT GGATTGTTAA AGAGAAATAA 22217 .......... .......... .......... .......... .......... .......... 463 GACGCTTATT GGTTTCTATT CACTTTCTGC TTTCTCTTTT GCCCCCCATT TGGTGTGAAG 22157 .......... .......... .......... .......... .......... .......... 463 GATTTAATTG CTGTGAGGTA GAATCTATAG ACTAGTTTGC ATTCATGGAG ATTCTGTAAC 22097 .......... .......... .......... .......... .......... .......... 463 TATTCCAAAG AGATGGGAAG TTCGAGACAA TTGAGGTTTT TTCTTGAAAT TGGAAGCAAT 22037 .......... .......... .......... .......... .......... .......... 463 TACTAATTCA TGGTAGGACA TGTACTGATG TACATAGTAA AAACTTCATT CTCGAATTCT 21977 .......... .......... .......... .......... .......... .......... 463 CTGAGAACTT ATGTTGATAA TTTTTTAGCA GTTGGTTAGG CAACAATTAT TTTTCATAGA 21917 .......... .......... .......... .......... .......... .......... 463 AGTACTCTTT TGTTTTGTAC AACAAGCTTT CTCTAGACTG TGTTTCATAT TTGACATTTA 21857 .......... .......... .......... .......... .......... .......... 463 TTATGGACAC GTGAAGTTTT GATGGTTGAT TCTGGAATCA CCAATTTGCA TATTCATATT 21797 .......... .......... .......... .......... .......... .......... 463 TGGGACATTG AAGTCACCAA TTAAGACAAA AGGATCAAAT TTTGACATTT TGTGGTAGTA 21737 .......... .......... .......... .......... .......... .......... 463 TCTCGTTTTT AGCTTTCTTT ACAAAATTGT ATTGCTATAC AGTATCTCTT GCTCCCTGTC 21677 .......... .......... .......... .......... .......... .......... 463 TTTACAGTCA CCATTCAATC TCTGCCTCCC TTCATTTGAC TGCTTTTTTG TCTACCGCTA 21617 .......... .......... .......... .......... .......... .......... 463 TGCATGCGTA CTCCATTCTA TTACTGATGG TTGGTGATGT ATAGTTGGTT CCTTCTCTGG 21557 .......... .......... .......... .......... .......... .......... 463 ACATACACTA GGTTATTATG GTAACTTTAG CTTGGTTAAG TAATGCTTGG CAGTTTCTGC 21497 .......... .......... .......... .......... .......... .......... 463 ATTTTTTTTA AATGTATAGA TCTCCTCTTG ATCGACAACA AAGTCATTAC TTCGTATGAA 21437 .......... .......... .......... .......... .......... .......... 463 GCATTCGTGG ATCTTAGTTT CAAGCTAGCT TACACTTCAT TTTGTCGTAT CTTAGGATCT 21377 .......... .......... .......... .......... .......... .......... 463 TAGTTTCAAG CTAGCTTATA CTTCATTTTG TCGTATCTTA CAAGTCTCAG AACCTATGCA 21317 .......... .......... .......... .......... .......... .......... 463 GGTATTGTAA AAAACATGAC CTAGTTGGAT CTTTTTTCCG ATAACGCGTC ACCTAGTTGG 21257 .......... .......... .......... .......... .......... .......... 463 ATCTTGACTG ACATAACACA CACTCATACT ATGTTTGCAC TTTGAATGTG GTTTCTTATT 21197 .......... .......... .......... .......... .......... .......... 463 CATTTGAGAA ACAGAAACAA ATACGATGCT GAAGACTTAT GTGGTTTGTA TGCTATTCTG 21137 .......... .......... .......... .......... .......... .......... 463 ATAGATTTTC GTTTCAGTAA GTAGTTTAGA ATGTGGATTG GAAGCTTAGT TTTCTTTCTG 21077 .......... .......... .......... .......... .......... .......... 463 ATTTTGGTCT TCAACTCCTT TTGGATCTTC CTTATTGCTT TCTGGGGGAT TTCGATTTTC 21017 .......... .......... .......... .......... .......... .......... 463 CTGGTAATTG TCATGATGTC GTAATCATAT ACTATCTTAA TACACGTAAG TGTGCCACAG 20957 .......... .......... .......... .......... .......... .......... 463 TGGCATAAGG GGGATTACCT ATGTAAAGAA AATTACATAA AGCAGTTAAA GCACTATAAA 20897 .......... .......... .......... .......... .......... .......... 463 CTAGGTCATC TCCAATGATA TAATCTTATA TGGACTAGAA TAGGATTTTC AGCAAGAAGT 20837 .......... .......... .......... .......... .......... .......... 463 ACATTTAAAG AACCGTGACT TAGCATAAAT GTTAAAATTA TTGTACAAAT GCGGTCTTAA 20777 .......... .......... .......... .......... .......... .......... 463 GTTTCTTGTA AAACAGGATG AGGTATAAAG TTGTGATTCT CAGAATGCTT CCTATTAGAC 20717 .......... .......... .......... .......... .......... .......... 463 TTTAATGGAG CAGTTTTCCT TCTTTTCCAT GACTTGTTTT TCTTTTTTTG ATAACCACGG 20657 .......... .......... .......... .......... .......... .......... 463 TGTCTGAGCA CAAGTACCTG GTAACTGTGC CTATCAAGGA TTGGATATAT GGCAAAAAGT 20597 .......... .......... .......... .......... .......... .......... 463 CATTTTTTGA AAATTAAAAT ATGGCTGAAA ATCTGGAGTG CTTTTTTTCT GTCTTTTTGG 20537 .......... .......... .......... .......... .......... .......... 463 TAAACTTGGT ATAATCTTCT CCTTTCTTTT TTCTTTTCGG GCTGTGGCTT GTGTCTTGTG 20477 .......... .......... .......... .......... .......... .......... 463 CCTTGACAGA CATCTGAAGC AGTTGTCAAC CAGCACTGTC TGTCCTAGGG GCTGGTCATC 20417 .......... .......... .......... .......... .......... .......... 463 TACATGAAAT TTTACAAACT TGGTCTTTAA AACATGTCAT GTCTTAGAGG TTAGTCATCT 20357 .......... .......... .......... .......... .......... .......... 463 ACATGAAGTC TTACAAAGTA GGGTCTTAGA TACATATCAT CTTGTTGGCT TATATTTTTG 20297 .......... .......... .......... .......... .......... .......... 463 ACAGGTGATA TGGGATCAGG GATGAGTGCA GTATATGTTG CAAGGTATAT ATAAATATTT 20237 .......... .......... .......... .......... .......... .......... 463 GTCAAGGTAA TCAGATAGCT TGAGTCTTAT ACTTGTCTTA TACATGTTGT ATACTTGGTA 20177 .......... .......... .......... .......... .......... .......... 463 CTTCTTTGGG ATTTGAAGTA TCTCATAGGT TTTTTCGTGG TGTCTAGTTT CCTTTGAATA 20117 .......... .......... .......... .......... .......... .......... 463 CTTGTATGCT TCAACATTTA TGGGTGCATT ACCATATGGA ACTATTTATT GATATTAATT 20057 .......... .......... .......... .......... .......... .......... 463 ACCAATCAAC AAGAGAAACC GTGAACATCT GAGTAAGGGT TGGTATTGCA AGTTATAGTT 19997 .......... .......... .......... .......... .......... .......... 463 CAAGAATAGC GGAAGTGCTG CAATATTCTA GAAAACTTCG TCTTAAAAGG ATTTAGATAC 19937 .......... .......... .......... .......... .......... .......... 463 CTACTCAGAT GTTAGTGGCA GTTGCAAGTA TAAGACATTT GCTGCCGATT CTTATCTACT 19877 .......... .......... .......... .......... .......... .......... 463 CATCCTGCTA TCTTTTCAGT TGCAAGTATA AGACATTTGC TGCCGATTCT TATCTACTCA 19817 .......... .......... .......... .......... .......... .......... 463 TCCTGCTATC TTTCAGTGTC TTGATTCTAT TGTTTGCTAA ATTTAAACAT ACTGCTCAGC 19757 .......... .......... .......... .......... .......... .......... 463 AGATGATTCC CTTGTTCTTC TGCGGGGACT TTATTTTGGT AGATCTATTC TAATTGTTCT 19697 .......... .......... .......... .......... .......... .......... 463 GATTGAACCT GTGTCTCTCT TTCCCCCGTG CATTGGGTGT TCTATTTTCT GTGCAGACTT 19637 |||| .......... .......... .......... .......... .......... ......ACTT 467 GCTATCTGCT GTTCGAAAAG CTGTGGAAGA TGAAAAACTG CCACTGAATG TTGCTGAAGG 19577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATCTGCT GTTCGAAAAG CTGTGGAAGA TGAAAAACTG CCACTGAATG TTGCTGAAGG 527 AATGGAGGAG TTGTATCAGA ACTATCAGAA TGCAGTAAAA CACCTTTCTT TGAACTTGTG 19517 |||||||||| |||||||||| |||||||||| |||| AATGGAGGAG TTGTATCAGA ACTATCAGAA TGCA...... .......... .......... 561 GTTAAATGTA CTCTTTTAAG TGTTGGGTCA TGGGTGCTTT GTTCGCTTAG ATATGTTTGC 19457 .......... .......... .......... .......... .......... .......... 561 TCATATGCAA GAGTCTTCTT GCATGAACAT ACTTTCTGGG TCATAACATG CTTTCTTAAG 19397 .......... .......... .......... .......... .......... .......... 561 TTACTAAAGA ACAGTATATA ATAGATTTAA GATGGTTGAG AATACAATTA AATAATAAAC 19337 .......... .......... .......... .......... .......... .......... 561 GTGTGCTCTC TCTAATGGCT TAGGCTTTTA GATGAGATGG TTACACACTT CAACAATGAT 19277 .......... .......... .......... .......... .......... .......... 561 GAATATTTTT TTTCTTCTAA TGTATTTGAT CATTTGAATT TAGTGGATGG TATTATGTAA 19217 .......... .......... .......... .......... .......... .......... 561 CTACACGCTG TTGGTATAAA AAAAGTTCAC GTTGTACCTA TAACAGTAGA TAAAACGCTG 19157 .......... .......... .......... .......... .......... .......... 561 GAGCTGGAAA AGCTAAAGTG GAGAGAGAAA TCACAATTTG GCATGCCATT ACTTTTTTGT 19097 .......... .......... .......... .......... .......... .......... 561 GACCAATTAT GTGGAAAGAC ATTATTACGG GGCCAAATGT TTTCAGAAAA TGACCTGAAG 19037 .......... .......... .......... .......... .......... .......... 561 ATAATAGGTT AAGCCCTTGT GAAGATTCTA AATGTAGTCT AACATTCAAC ACGTTCAGTA 18977 .......... .......... .......... .......... .......... .......... 561 TCATTTCTTC CTAGAGCATG GAAAATATGA TCTTGTGATG ACAAAACAAT AATAAAGATA 18917 .......... .......... .......... .......... .......... .......... 561 AATCTAGAGG AGGTGCTTAT ATTTGTATGT TTGTCTTTGC CTGATTTTTC CGCACGTGTC 18857 .......... .......... .......... .......... .......... .......... 561 TTTCTTGTTC CTACTTCTCT AGTATATCTT ATTTTCACTA ATAAATAATA ACTCGCCTCC 18797 .......... .......... .......... .......... .......... .......... 561 TCCTTCCCTC TTTCCTACTA AATTTTAGAG AATTTCATTT ATTTCATTCT TGGAAAGACT 18737 .......... .......... .......... .......... .......... .......... 561 ACTACTTTTG GACTTACCAT ATTTGGTGAA GTAATCCAAT CTATCTTTTA GACTTGTCAG 18677 .......... .......... .......... .......... .......... .......... 561 ATTATCAATC TGTTTGGATT TAATTTATTC ATGATACTCG TGCGCTTTTC TTTGAGAGAG 18617 .......... .......... .......... .......... .......... .......... 561 AACGAGTTTG TTGAGACCTG GAGTTCGGCA TTTTCTTTTT TGTTTATTTG GAGAACTTGT 18557 .......... .......... .......... .......... .......... .......... 561 TGTGGTCATG TGCCCTCTTG ATTTTTCCTG ATCGTTTTTT ATAGGTTTTA CAAAGCGGCG 18497 |||||| |||||||||| .......... .......... .......... .......... ....GTTTTA CAAAGCGGCG 577 TTCCCAAAGC AGATGAGGCC ATTTTGTATA ACATGGCTCT TGTATTCGAC CGTGTTTTTG 18437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCAAAGC AGATGAGGCC ATTTTGTATA ACATGGCTCT TGTATTCGAC CGTGTTTTTG 637 TGGATGTGAA GGTATTCTTC TGCCGTGTTG ATCTTTCAAA TTCATGCTAG AAGTTTCCCC 18377 |||||||||| | TGGATGTGAA G......... .......... .......... .......... .......... 648 TATATCTTTG TTTCTCGTTA CTTCATCTAA GCACACATGT ATTCTATCAA GTTGTTAGAA 18317 .......... .......... .......... .......... .......... .......... 648 TGTAAAATTG TAAAATGTAG CAATGCTCTT ATTTCAGGAT CCTTTTGAAT TCTCGCCGTA 18257 ||| |||||||||| |||||||||| .......... .......... .......... .......GAT CCTTTTGAAT TCTCGCCGTA 671 TCATAAGGCC ATTCGTGAAC CTTTTGACTA TTACAAGTTT GGTCAAAATT ATATCCGCCA 18197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAAGGCC ATTCGTGAAC CTTTTGACTA TTACAAGTTT GGTCAAAATT ATATCCGCCA 731 GCTAGTTGAT TTCAGGTGAG TCTCAGTTCT CTCTCTGTAG TGTGTATCAT GTAATAGTTT 18137 |||||||||| ||||| GCTAGTTGAT TTCAG..... .......... .......... .......... .......... 746 GACTAACTTA AAAAATGCGC GGTTCTTTCA ATCTTGTTAA TGATTGAATT CACAGGAAAT 18077 .......... .......... .......... .......... .......... .......... 746 ATTCGAGTAA ACAGCTTAAA ATATCCTTTG ATTTACATCC TTTTGTCGTT GTAATATTTG 18017 .......... .......... .......... .......... .......... .......... 746 CTTGTTCAGA TCAACGTATT CAAGACCAGG CATGCTCTAT ATGTCGTCTT TATACCTTGT 17957 .......... .......... .......... .......... .......... .......... 746 AAATAATGGA ATGATGTCTA TATAGATTTA GGTACAGATA AGATGGTGGC TAGTTCTAGT 17897 .......... .......... .......... .......... .......... .......... 746 ACATATACAA GGTGGTGGGT GAATATATGT GAGAATAACT TGTTGGAATA TTGGGTTAAG 17837 .......... .......... .......... .......... .......... .......... 746 AGCAGATAGT AAAACTACTG AAATCATTTA TATCTCTAAA GGGGAAAGGG CTTATGTCAT 17777 .......... .......... .......... .......... .......... .......... 746 GTTAGAATAA TTGTTCTAAA CATTAATGGC CAGCAGAAAA TCATTTTGAC CATATTGATG 17717 .......... .......... .......... .......... .......... .......... 746 AAAGGGATAA CTAAATCTTT TGCAATTACG TATGGGGAAA AATATTTTTG TTATTACCCT 17657 .......... .......... .......... .......... .......... .......... 746 AATTATTTTT TCATTGTAGT TTAGGTATAA TGATGCTATT TTCTCAATTG GTTGGGAAAA 17597 .......... .......... .......... .......... .......... .......... 746 TCCCAATTTC TTTAGCTGAA AGAAAGAGCT AAGCTGTTGC ACTATTCTGA TGAATAGTTC 17537 .......... .......... .......... .......... .......... .......... 746 ATCATCCTCT GGTGTCTGTA TATTATTTTT ACCCAGTGAT GTTCTTATTA ATGCCTCATA 17477 .......... .......... .......... .......... .......... .......... 746 GCAATCCTTA AGTCCAAAAA GTATGACGCG ATTCAAAATA CTGGGTGTCT AACAATTTAA 17417 .......... .......... .......... .......... .......... .......... 746 TATCCATTCA ATCAGACCTT ATTACATTGA TTTTATGATC TAAATATGGA TATTTTGAAA 17357 .......... .......... .......... .......... .......... .......... 746 ACAACATAAA AAGTATCCTT CTTTCATGAT CTAAATATGG ATATTTTGAA AACAACATAA 17297 .......... .......... .......... .......... .......... .......... 746 AAAGTATCCT TCTTTCAAAG AAGGATACTT TTTAAGTATG TAAGAAACCT CCTGAAAAGA 17237 .......... .......... .......... .......... .......... .......... 746 GGAATAATTA GTACTTACAA ATTGAAGTCC CGTAGTTATT GTATGAACAA CCTAATCACC 17177 .......... .......... .......... .......... .......... .......... 746 ACACTAAGTT GATTTCTATT TGACTGTTTA GCAGCTAGTT AATCTGTAGC ATTTTGACGA 17117 .......... .......... .......... .......... .......... .......... 746 GTTGTGTGGG TTGAGTCACC AATGAAGCTT AGCCCATGTG TAAAATTACT ATTGTGTAGG 17057 .......... .......... .......... .......... .......... .......... 746 GATATATTTT TCTCCCTCCG TTTCAATTTA TGTGTCTTAG TGTGGCTGGA CACGTGTTCA 16997 .......... .......... .......... .......... .......... .......... 746 AGGTAGGGAG ATTTTTTAAT CTTGTAATGT TAAACTAAAG ATATAGGTAA TGTATCAAAA 16937 .......... .......... .......... .......... .......... .......... 746 TGATTTTGAT TCTTGTGTTC TTAAACATGC TATGCAGGAT GTTTGGAATT AAAGAGTTAA 16877 .......... .......... .......... .......... .......... .......... 746 GCATACCAAA AAGGAAAGTA AGACGCATTA TTTTTTAAAG TAAGACGCAT ATTTTAAAAC 16817 .......... .......... .......... .......... .......... .......... 746 AAAGGGTGAA GTTGCACATT GTTGAGTAGT GGATAGGAAT TCAAAATTTG TAATTCCTAT 16757 .......... .......... .......... .......... .......... .......... 746 ATATGAAGTA TGATGTTAGA GGGTTGTTTG TCTTGTTCTA GGAACTCCCT GCTTTAACTC 16697 .......... .......... .......... .......... .......... .......... 746 TTAACAGGGG TGTTTGCGAA CAATATCTCC ATTATTGACA GACATACCGT TGCTATTGAA 16637 .......... .......... .......... .......... .......... .......... 746 TATTTTTAAT CAGCTTTAGT GAGTGTATAT CAAATGTGGT TATTAGAAAT TGATCTTTCT 16577 .......... .......... .......... .......... .......... .......... 746 TTGGCTCTTT GCTTTAAAGT GAACAGCCTT GTTCCCTGCA GATCTCATGA TTTACTTCGG 16517 .......... .......... .......... .......... .......... .......... 746 AATCTAACCT CTACTATTTT CGAGTTTGTA GGAGCTCTTA TGTTGGGAAT ATGTCAGTTT 16457 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GAGCTCTTA TGTTGGGAAT ATGTCAGTTT 775 TCAGTGAAAT GGCAGAGAAG CTTAAACAGG TTCGGCATTT CAGATTGTTA AGAGTGTTTC 16397 |||||||||| |||||||||| ||||||||| TCAGTGAAAT GGCAGAGAAG CTTAAACAG. .......... .......... .......... 804 TATTGATTAG TTTCTTCTGT AATTATGCTA ACTAGTTTCT GGGAAGGTGC GTTGCATGTT 16337 .......... .......... .......... .......... .......... .......... 804 TATCCCTTGA TCAAGTTTAG CACATAGTGA TAGAGTTCTA ATTCAGACTA CTTATGAAAA 16277 .......... .......... .......... .......... .......... .......... 804 AGGTTGAAGG AGTAGTAGTC TCTGTTTCCT TATTTTCTTT TGGGGCACAC AAAAAGTTCC 16217 .......... .......... .......... .......... .......... .......... 804 TCATCATATA GATGATCAAG TGGAGATCGT AGAGAATTGT ATGTTTTGTA GATTCTCACC 16157 .......... .......... .......... .......... .......... .......... 804 TTTTGGTATA CCTTTTGCAT ACAACTGTTT ATGGTCATGT ATATGAACGA AAATACTTTT 16097 .......... .......... .......... .......... .......... .......... 804 ACTTGATAAA AAATTTAAAA AAGATTTCTT AACAAGCTAT TGCATAGGAG CGAGGTTTTA 16037 .......... .......... .......... .......... .......... .......... 804 CCATGTGCAT ACCAAAAGGG TAGAGGCTGT GGGTTCCCCT TGTCATAAAA AAATGAAAAA 15977 .......... .......... .......... .......... .......... .......... 804 ATTCCTTGAT TCATCAAGCA ATGATGTAAG ATTTTTTTAG AGCTTATTAT CAAAATTTGA 15917 .......... .......... .......... .......... .......... .......... 804 GCTTAACATG ACCTTGCTTT CAGACCCCCT TACGCGAAGA TCCATATTTT CTTCTTATTC 15857 .......... .......... .......... .......... .......... .......... 804 GCCTTACTGG ATGAACCAGA TAACTTTTCC CGATTTCCAC GCTATTCAGC AGTTTCCTTG 15797 .......... .......... .......... .......... .......... .......... 804 ATTGGGGGGG CGAATGTACA CAAGACTTTG TAATCCTCAG CTTTAATACA TTATAAGAGT 15737 .......... .......... .......... .......... .......... .......... 804 GAACCTCCAA AAGATGGTAG AAACTCTGAA GTAGGAATAT TGACATATTT CATACTTCCG 15677 .......... .......... .......... .......... .......... .......... 804 AACTTCTGTC ATCTTTTGTT TGGTGGTTTG TCTGTCTTAT TATTGAAAAT ATTTAGGTAT 15617 .......... .......... .......... .......... .......... .......... 804 CTTTCTCATT CTATGCGTTT TGTCAAGTGA AGTTACTTGC AAGTTATAGA TGTATGTGGC 15557 .......... .......... .......... .......... .......... .......... 804 TTCTTGTCCA CCAAAATTAT GTGCTCACTA TTTATACTGG AGTTACGAAT AACAGTCTTG 15497 .......... .......... .......... .......... .......... .......... 804 GCTCAAAATG TTGTGGGTGG ACCAACTATC TCTATATCAC CTGCGCGACC ACTGGTTTAC 15437 .......... .......... .......... .......... .......... .......... 804 GCCTAAAGAT CTTCTTGTAA AGTTGAATAT TTTTCTTCGA TGCTGTATAA CACTAACTAC 15377 .......... .......... .......... .......... .......... .......... 804 AGATGGAGAA CTCTTGAGTG CTTACTGTAC CCTTCATCCC CCCCCCCCCC CCCCAAAAAA 15317 .......... .......... .......... .......... .......... .......... 804 AAAAGAGCAA AAAAGAATGT CACTGTATAA TTTTTATTCT CTCTTGATAT CATTTTGTTA 15257 .......... .......... .......... .......... .......... .......... 804 GTTCATTTAC TGTTAATAAA TCTCAAACTT AGTCGCTGAT ATGCTTACCC AGTTCTTTTT 15197 .......... .......... .......... .......... .......... .......... 804 TGCATGGCTT TTTACACATT GCCTTGATCA TTTTTCCTGT TGCCTTTACC AAATCACTAT 15137 .......... .......... .......... .......... .......... .......... 804 TTCTGTATAC TAATTTCAGG GTGATAATGT TGTCTTGATG TCAAATCATC AAAGTGAAGC 15077 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G GTGATAATGT TGTCTTGATG TCAAATCATC AAAGTGAAGC 845 CGATCCTGCG ATTATTGCAC TCTTGATTGA ATCAAAGCTC CCAGATATTG CTGAGAACAT 15017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CGATCCTGCG ATTATTGCAC TCTTGATTGA ATCAAAGCTC CCAGATATCG CTGAGAACAT 905 TGTTAGAACT TTTTCCACCC TCTTGCACTT CATAAGATAT TTATACCTGA AGTAGCTTAA 14957 | T......... .......... .......... .......... .......... .......... 906 TTCACTAGAT TATCCTTTAC TGGTAACAGA TATATGTTGC TGGAGATAGA GTTATTACTG 14897 | |||||||||| |||||||||| |||||||||| .......... .......... .........A TATATGTTGC TGGAGATAGA GTTATTACTG 937 ATCCTCTTTG CAAGCCATTC AGCATGGGAA GGTGCACTTA GATAGCATTG TCAGAGTATG 14837 |||||||||| |||||||||| |||||||||| | ATCCTCTTTG CAAGCCATTC AGCATGGGAA G......... .......... .......... 968 TACAGAAATC ACCATTTACT TAGACATTTG ACAAACTTAA TATGTTTAGG AATCTCCTGT 14777 | |||||||||| .......... .......... .......... .......... .........G AATCTCCTGT 979 GTGTTTATTC GAAAAAACAT ATGAATGATG ACCCCGAACT TGCTGAGATG AAAAAGAGAG 14717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTATTC GAAAAAACAT ATGAATGATG ACCCCGAACT TGCTGAGATG AAAAAGAGAG 1039 CAAACACAAG AAGCTTGAAG GAGATGGCTT TGCTATTGAG GTACTTATTC TGCTATTGCT 14657 |||||||||| |||||||||| |||||||||| |||||||||| CAAACACAAG AAGCTTGAAG GAGATGGCTT TGCTATTGAG .......... .......... 1079 TTGTCTTTCT TGGAGTATTT TGGTGAAGCT TTTACTTAAG AAGTTTTGAT GTCACACAGT 14597 .......... .......... .......... .......... .......... .......... 1079 ATTTTATCCT GCGCCAATCT CTCATAAACA TTTTTCTGCC AAGTGTTACG AAAAAATGAA 14537 .......... .......... .......... .......... .......... .......... 1079 AGACTCGCTC TTCTAAGCTC TACATGTATT GAATATGATT AAATGGAAAG CTAAGCCTAA 14477 .......... .......... .......... .......... .......... .......... 1079 TGTTGCATGT GTACTCTTAA TCTTCCCTAC CTATCAGAAA ATCTTGTTTG CTCAGGCGTG 14417 .......... .......... .......... .......... .......... .......... 1079 TAATAGTTCT TTCACGAGGG GGTTAACCCT GCTTGATTAT TCTGCATGGA AGAAAACCAT 14357 .......... .......... .......... .......... .......... .......... 1079 AGAGCAAGTC ACGGTAGAAA TGACTTCTAA CATGAATGTG CAGAAGATAA TACAGATACG 14297 .......... .......... .......... .......... .......... .......... 1079 ATAGATGGAA GTTTTCTCAT GATCATGGAT GTGAAATTCA ATCATCATCC ATTATATGAT 14237 .......... .......... .......... .......... .......... .......... 1079 TGCTTTATCA GTTTCATACT TCAAGTCCTA GTAAACTGTT GGTATAGTTA GCACAATAAT 14177 .......... .......... .......... .......... .......... .......... 1079 GGAAGAGGAA ATCAAATGAT ACATGTTTCT TTGGCAATTC GAGATAGCTC ACAAATGCTC 14117 .......... .......... .......... .......... .......... .......... 1079 TTTTTGATAT TCCACTATTG CTCTTTTGAT GGAAGCATAC ATCTGAGGAT ACATGTACTT 14057 .......... .......... .......... .......... .......... .......... 1079 GTGATCCAGG GGTGGATCAA AAATAATATG GATTGCTCCT AGTGGTGGAA GAGATAGGCC 13997 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G GGTGGATCAA AAATAATATG GATTGCTCCT AGTGGTGGAA GAGATAGGCC 1130 AGACCCTGTT ACAAAAGAAT GGTATCCAGT AAGATTCCTT TTTCTATTTA ATAATTATAG 13937 |||||||||| |||||||||| |||||||| AGACCCTGTT ACAAAAGAAT GGTATCCA.. .......... .......... .......... 1158 TTGTCTTTCC ATATATTTAT CTTTTCATTC TATTTGATGG ACATACCTGC AAACATGGCC 13877 .......... .......... .......... .......... .......... .......... 1158 AACATACATT TCTCGACAAG GTATTTTCTC CGTTTCATTC ATATGACTAT GTTTGTACAG 13817 .......... .......... .......... .......... .......... .......... 1158 AGGAGGGGGT TTAATATATT AATTTGACTC TGTATCTTAA TAGTGGCAGT ATAGGAAATA 13757 .......... .......... .......... .......... .......... .......... 1158 TTTTAAATAG TGGTTCAAAA GTTAGTTTTA TGAAGAACAC TGAAACAAAT TTGATTTCTT 13697 .......... .......... .......... .......... .......... .......... 1158 GGAAGTCGTA TAAAACAATA ATCTAAGTGG AGTGGTGAAA ACATTTTGAG AAGTCCCATA 13637 .......... .......... .......... .......... .......... .......... 1158 GTTGAAAAGC TACCATAATT TGAAGGAGGA AGTGTTGCTA CCTTATTCAT TCTTTTAAGT 13577 .......... .......... .......... .......... .......... .......... 1158 GATTCTTAAT TCCTTTGTGG GCTGATTTGC TATCCCTGCC TATGAAATAT AGGGCAAGCC 13517 .......... .......... .......... .......... .......... .......... 1158 TCATACATCT TCTGAATTAC ATCTGATGCC AGTTTACATC TTAAGATTTT CTTCCACGAC 13457 .......... .......... .......... .......... .......... .......... 1158 TTAACTGTTC TGTTCTTGAT TGCTTCCATT TCCTTGGTGA GGTTGTTCTT GACTCTTTAA 13397 .......... .......... .......... .......... .......... .......... 1158 GAGAATAGTC ATCTGCAGCC GTGTGCTGGC ACATTTATGA TTCAGTTCTC AGAATGTGAT 13337 .......... .......... .......... .......... .......... .......... 1158 TGGCATTATT TGCCTGAACT TTAAATGAGA GTTAACTGTT CGTATCCAAT TGGGATTTAC 13277 .......... .......... .......... .......... .......... .......... 1158 ATGGATACAT GCTATGGTTC ACTGCTTCTT CCTATTCTGT ATGTTCAGCA ATACACTTCT 13217 .......... .......... .......... .......... .......... .......... 1158 CCATTACACT TGCCTTGTGA CAGTTCTAGG GTGATGTTGA TAAGCGTGAT AATATCTCTT 13157 .......... .......... .......... .......... .......... .......... 1158 CTTCTCCAGC ATAGTTCTAT GTATATGATG GGCAGTTAGT TTCAAAAGTT TTGGTATTTA 13097 .......... .......... .......... .......... .......... .......... 1158 TGCTTCGTCA TGATGCTTAA TTAAGAGCCA TTTTTTTAAC ATTTAATTTT TTTTTCCAAA 13037 .......... .......... .......... .......... .......... .......... 1158 AGAGCCAGAT CCATATAGGT AATATCAGTT AGTTAAGACG CAGCTAATTA TTTTTCAATG 12977 .......... .......... .......... .......... .......... .......... 1158 AACAGGTGTT TGGTTTAGAT AAACCATAAT TGCCTTTAAA AGGCCAAGTA TTATGCATTG 12917 .......... .......... .......... .......... .......... .......... 1158 GAATGAAATG GGCCTGAATG GATATAGAGG AATCATATAA CAGATTCCAA CTGATCTGTT 12857 .......... .......... .......... .......... .......... .......... 1158 GATTAATTGA TTTTGAGCAG CTTGTGGTTG AACATTTTGC TTGTATTTCT TCAGGCACCA 12797 |||||| .......... .......... .......... .......... .......... ....GCACCA 1164 TTTGATGCTT CCGCGACAGA CAACATGAGG AGGCTTGTAC AACATGCTGG TGTCCCTGGT 12737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATGCTT CCGCGACAGA CAACATGAGG AGGCTTGTAC AACATGCTGG TGTCCCTGGT 1224 CACATTTATC CTCTAGCAAT ATTGTGCCAT GATATTATGC CCCCTCCCGC CCAGGTTGGT 12677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CACATTTATC CTCTAGCAAT ATTGTGCCAT GATATTATGC CCCCTCCCGC CCAG...... 1278 CCTGTGTCAA TTATGTTTGT TTCTGTGATG ACTATGTTTT TTTACATATC CCTGCTTGCG 12617 .......... .......... .......... .......... .......... .......... 1278 ATAGTACAGG TTGAGAAAAA TATCGGAGAG AAAAGAGTTG TATCTTTTCA TGGAGCTGGC 12557 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TTGAGAAAAA TATCGGAGAG AAAAGAGTTG TATCTTTTCA TGGAGCTGGC 1329 ATATCTGTGG CACCCAAAAT TGATTTTCAT GAGGTTGCTG GTGCTTTGGA GGACCCTGAG 12497 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTGTGG CACCCAAAAT TGATTTTCAT GAGGTTGCTG GTGCTTTGGA GGACCCTGAG 1389 GTTAGTTTTT ATGGGAAGTC CACTTTGGTT TAATACTTCA AATTATTGGA AGCTTTTCTT 12437 .......... .......... .......... .......... .......... .......... 1389 AAACTAAATT TGGCAGCCTA ATGAGAGGTT TAGTGATATT TGTTGGTGAA CCTTTTGGGG 12377 .......... .......... .......... .......... .......... .......... 1389 GGGGGGGTCA TTCTATTTAA TAGAGAATGA AGGAGGAGAA GGGAAGTTGG ACCAAACTCT 12317 .......... .......... .......... .......... .......... .......... 1389 TTCTCTTTCC TATTTGAGAC CCAAATGAAC AGCTAGTTGA CCTTTGCTAA GAGGGGCGCA 12257 .......... .......... .......... .......... .......... .......... 1389 GGTTCAGCAG AAATTTTGAT TCCTGCAGTT GAGCTTTTTC TTGTTGGAAA AGTTAAGAAG 12197 .......... .......... .......... .......... .......... .......... 1389 TAAAGCTCCA AAGGAACTTT CAATATGCAA ATAAAACATT CATCTAATAC TGTTTTGTTT 12137 .......... .......... .......... .......... .......... .......... 1389 ATTTATTTTT TGTCAAGTTA ATTCTATAAA CTGAAGAAAA GATATGCATC TACAAGCTCT 12077 .......... .......... .......... .......... .......... .......... 1389 CTGAGGATAG TTAAATCTGT CCCCAAACCA TAGGAAAAGA AAATGAATAA AAGATGGAAA 12017 .......... .......... .......... .......... .......... .......... 1389 TTTTGTGATA CTTTTTTTCC TTAATAATAA AATTAGATAG AGAAACCTTC CCATGTGCCT 11957 .......... .......... .......... .......... .......... .......... 1389 AAAAAGAAAA TATTGTTTCC ATGAAATTCA AATGAATGAT GAACTAGCGA AGAGTGTTGA 11897 .......... .......... .......... .......... .......... .......... 1389 ATTATATCGG ATAATATAAA GCTACCTCCA CAGGTGTAAA CCGACTTATT TGGGTGTCAT 11837 .......... .......... .......... .......... .......... .......... 1389 CTGTGTTTTC TCCTTATATT TTAAGCTACC TAAGCTGCTG TACTTGATAG TTGTACTATT 11777 .......... .......... .......... .......... .......... .......... 1389 AATTTTTCTA CCTCCAACGA CTGTAGTATC AGTTTTCTGT TGCAAAATTC TTCTCTTCCC 11717 .......... .......... .......... .......... .......... .......... 1389 AGATCATTTC AGATCTTTAG CTCAAACATT TTTCTTTTGC CTCTCTTTTC TATCATTAAT 11657 .......... .......... .......... .......... .......... .......... 1389 ATATAAAGAA GATGGTTCAA CTAATTTCAC TGCCCTTACA AACCTTAAGC TCAAACATTT 11597 .......... .......... .......... .......... .......... .......... 1389 TCCACTTGCG TCTGCTTTCT ACTGTTCACT GAAGGAAATG GTTTCACCAA TTCAGTCTTC 11537 .......... .......... .......... .......... .......... .......... 1389 TTTCATTTCA CTGCAAGAAT TCTCTTTAAT GTTCTATTCC ATGGGGTTTT CAATCTTAAA 11477 .......... .......... .......... .......... .......... .......... 1389 TCGATGTTCC ATTTCACAGC CAAATATTTG CATCTTATTT TTATGAGATG CTATTGGAAC 11417 .......... .......... .......... .......... .......... .......... 1389 TCTTTTTTTT TCTTCTCCCC AATCCCCTCC CTCCTCCCAA ATAGATGGGA AATGCATCAT 11357 .......... .......... .......... .......... .......... .......... 1389 GGCTGGTTTG ATCAAGGAAA TGAGAGATGA ATCGAAAGCT AAAAAAACTG CACACCGAAA 11297 .......... .......... .......... .......... .......... .......... 1389 AATTAATTGC ATATAAATAA AAAGGATCTT ATGAGTAAAT ACTTTTCTTG ATGCAGGCTA 11237 |||| .......... .......... .......... .......... .......... ......GCTA 1393 AGATGGTATA TACAAAGGCA ATTTATGATT CTGTAAGCCA GCAGTATAAT GTGCTAAATT 11177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGTATA TACAAAGGCA ATTTATGATT CTGTAAGCCA GCAGTATAAT GTGCTAAATT 1453 CTGCTATACA TGGCAAACAA GGACTGGAGG CTTCAATACC TAGTGTTTCA TTGTCACAAC 11117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTATACA TGGCAAACAA GGACTGGAGG CTTCAATACC TAGTGTTTCA TTGTCACAAC 1513 CATGGCAGTA GCTTCTCTTC CAACTTTATT TTTCATACCT TGTTGCTGTA GTCAGGTATG 11057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CATGGCAGTA GCTTCTCTTC CAACTTTATT TTTCATACCT TGTTGCTGTA GTCAG..... 1568 TACTTCACCA AAAATGATCT GTTGACAAAA TTTAAACTGG AACAATTGGC TTCAATCCAT 10997 .......... .......... .......... .......... .......... .......... 1568 GTATGTCTGA TTCTTGCTTT GTCGGTATAT ATTACTAGTT TTGCAGATGT TTGTTTGGCA 10937 || |||||||||| |||||||||| .......... .......... .......... ........TT TTGCAGATGT TTGTTTGGCA 1590 GTTACTATCA AATCACAAGG ATTACACTCA CAATCTTTCC ACATACCACG CTTGCATGTG 10877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACTATCA AATCACAAGG ATTACACTCA CAATCTTTCC ACATACCACG CTTGCATGTG 1650 GTTAGTCTCT GCGGAAAGTT GATACAAACA AAGTAATTCT TGAAGTTACA GCAAACATAA 10817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGTCTCT GCGGAAAGTT GATACAAACA AAGTAATTCT TGAAGTTACA GCAAACATAA 1710 TCTGAAGGAT TTTTTTTTGG CAGGGTTAGA TGATTCTTTT GACACGAATG TACAGTTGCT 10757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAAGGAT TTTTTTTTGG CAGGGTTAGA TGATTCTTTT GACACGAATG TACAGTTGCT 1770 TTACATTGTA TTTGTATCAA ATGTTAGATT CAAATTTGTT AGTAATGATA GCTTTCAAGT 10697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACATTGTA TTTGTATCAA ATGTTAGATT CAAATTTGTT AGTAATGATA GCTTTCAAGT 1830 ACTGTTATGA CTTTCTAAGG TTTAGTGTTA GTAGCTATTC TAGATTGCTG CTCATCTTAC 10637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTATGA CTTTCTAAGG TTTAGTGTTA GTAGCTATTC TAGATTGCTG CTCATCTTAC 1890 CTTTGAAGTG GTAATCCAAT TTGTTGGGAA ATATAATATT TGATGCTCTG CTA 10584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CTTTGAAGTG GTAATCCAAT TTGTTGGGAA ATATAATATT TGATGCTCTG CTA 1943 hqPGS_C08HBa0320P23.1-_SGN-U318148+ (23832 23359,19640 19543,18512 18426,18279 18182,16485 16428,15117 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10584) ******************************************************************************** EST sequence 9 -strand 902 n (File: SGN-U336404-) 1 AGCTCCCAGA TATTGCTGAG AACATTATCT ATGTTGCTGG AGATAGAGTT ATTACTGATC 61 TTCTTTGCAA GCCATTCAGC ATGGGAAGGA ACTCCTGTGT GTTTATTCGA AAAAACATAT 121 GAATGATGCC CCCGAACTTG CTGAGATGAA AAAGAGAGCA AACACAAGAA GCTTGAAGGA 181 GATGGCTTTG CTATTGAGGG GTGGATCAAA AATAATATGG ATTGCTCCTA GTGGTGGAAG 241 AGATAGGCCA GACCCTGTTA CAAAAGAATG GTATCCAGCA CCATTTGATG CTTCCGCGAC 301 AGACAACATG AGGAGGCTTG TACAACATGC TGGTGTCCCT GGTCACATTT ATCCTCTAGC 361 AATATTGTGC CATGATATTA TGCCCCCTCC CGCCCAGGTT GAGAAAAATA TTGGAGAGAA 421 AAGAGTTGTA TCTTTTCATG GAGCTGGCAT ATCTGTGGCA CCCAAAATTG ATTTTCATGA 481 GGTTGCTGGT GCTTTGGAGG ACCCTGAGGT TAGTTTTTAT GGGAAGTCCA CTTTGGTTTA 541 ATACTTTAAA TTATTGGAAG CTTTTTTAAA ACTAAATTTG GCAGCCTAAT GAGAGGTTTA 601 GTGATATTAG TTGGTGAACC TTGGGAAAGG GGGGGGGGGG GTTAATTCTA TTTAATAGAG 661 AATGAAGGAG GAGAAGGGAA GTTGGACCAA ACTCTTTCTC TTTCCTATTT GAGACCCAAA 721 TGAACAGCTA GTTGACCTTT GCTAAGAGGG GCGAAGGTTC AGCAGAAATT TTGATTCCTT 781 CAGTTGAGCT TTCTCTTGTT GGAAAAGTTA AGTAAAGCTC CAAAGGAACT TTCAATATGC 841 AAATAAAACA TTCATCTAAA AAAAAAAAAA AAAAAAACTC GAGGGGGGGC CCGGACCCAA 901 TC Predicted gene structure (within gDNA segment 15824 to 11120): Exon 1 15041 15016 ( 26 n); cDNA 1 26 ( 26 n); score: 1.000 Intron 1 15015 14928 ( 88 n); Pd: 0.991 (s: 0), Pa: 0.979 (s: 0.96) Exon 2 14927 14866 ( 62 n); cDNA 27 88 ( 62 n); score: 0.968 Intron 2 14865 14788 ( 78 n); Pd: 0.025 (s: 0.98), Pa: 0.729 (s: 0.96) Exon 3 14787 14677 ( 111 n); cDNA 89 198 ( 110 n); score: 0.982 Intron 3 14676 14048 ( 629 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 4 14047 13969 ( 79 n); cDNA 199 277 ( 79 n); score: 1.000 Intron 4 13968 12803 (1166 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 12802 12683 ( 120 n); cDNA 278 397 ( 120 n); score: 1.000 Intron 5 12682 12608 ( 75 n); Pd: 0.979 (s: 1.00), Pa: 0.928 (s: 0.98) Exon 6 12607 12151 ( 457 n); cDNA 398 858 ( 461 n); score: 0.931 PPA cDNA 859 878 MATCH C08HBa0320P23.1- SGN-U336404- 0.957 855 0.948 C PGS_C08HBa0320P23.1-_SGN-U336404- (15041 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12151) Alignment (genomic DNA sequence = upper lines): AGCTCCCAGA TATTGCTGAG AACATTGTTA GAACTTTTTC CACCCTCTTG CACTTCATAA 14982 |||||||||| |||||||||| |||||| AGCTCCCAGA TATTGCTGAG AACATT.... .......... .......... .......... 26 GATATTTATA CCTGAAGTAG CTTAATTCAC TAGATTATCC TTTACTGGTA ACAGATATAT 14922 || ||| .......... .......... .......... .......... .......... ....ATCTAT 32 GTTGCTGGAG ATAGAGTTAT TACTGATCCT CTTTGCAAGC CATTCAGCAT GGGAAGGTGC 14862 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| GTTGCTGGAG ATAGAGTTAT TACTGATCTT CTTTGCAAGC CATTCAGCAT GGGAAG.... 88 ACTTAGATAG CATTGTCAGA GTATGTACAG AAATCACCAT TTACTTAGAC ATTTGACAAA 14802 .......... .......... .......... .......... .......... .......... 88 CTTAATATGT TTAGGAATCT CCTGTGTGTT TATTCGAAAA AACATATGAA TGATGACCCC 14742 ||| || |||||||||| |||||||||| |||||||||| ||||| |||| .......... ....GAA-CT CCTGTGTGTT TATTCGAAAA AACATATGAA TGATGCCCCC 133 GAACTTGCTG AGATGAAAAA GAGAGCAAAC ACAAGAAGCT TGAAGGAGAT GGCTTTGCTA 14682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTGCTG AGATGAAAAA GAGAGCAAAC ACAAGAAGCT TGAAGGAGAT GGCTTTGCTA 193 TTGAGGTACT TATTCTGCTA TTGCTTTGTC TTTCTTGGAG TATTTTGGTG AAGCTTTTAC 14622 ||||| TTGAG..... .......... .......... .......... .......... .......... 198 TTAAGAAGTT TTGATGTCAC ACAGTATTTT ATCCTGCGCC AATCTCTCAT AAACATTTTT 14562 .......... .......... .......... .......... .......... .......... 198 CTGCCAAGTG TTACGAAAAA ATGAAAGACT CGCTCTTCTA AGCTCTACAT GTATTGAATA 14502 .......... .......... .......... .......... .......... .......... 198 TGATTAAATG GAAAGCTAAG CCTAATGTTG CATGTGTACT CTTAATCTTC CCTACCTATC 14442 .......... .......... .......... .......... .......... .......... 198 AGAAAATCTT GTTTGCTCAG GCGTGTAATA GTTCTTTCAC GAGGGGGTTA ACCCTGCTTG 14382 .......... .......... .......... .......... .......... .......... 198 ATTATTCTGC ATGGAAGAAA ACCATAGAGC AAGTCACGGT AGAAATGACT TCTAACATGA 14322 .......... .......... .......... .......... .......... .......... 198 ATGTGCAGAA GATAATACAG ATACGATAGA TGGAAGTTTT CTCATGATCA TGGATGTGAA 14262 .......... .......... .......... .......... .......... .......... 198 ATTCAATCAT CATCCATTAT ATGATTGCTT TATCAGTTTC ATACTTCAAG TCCTAGTAAA 14202 .......... .......... .......... .......... .......... .......... 198 CTGTTGGTAT AGTTAGCACA ATAATGGAAG AGGAAATCAA ATGATACATG TTTCTTTGGC 14142 .......... .......... .......... .......... .......... .......... 198 AATTCGAGAT AGCTCACAAA TGCTCTTTTT GATATTCCAC TATTGCTCTT TTGATGGAAG 14082 .......... .......... .......... .......... .......... .......... 198 CATACATCTG AGGATACATG TACTTGTGAT CCAGGGGTGG ATCAAAAATA ATATGGATTG 14022 |||||| |||||||||| |||||||||| .......... .......... .......... ....GGGTGG ATCAAAAATA ATATGGATTG 224 CTCCTAGTGG TGGAAGAGAT AGGCCAGACC CTGTTACAAA AGAATGGTAT CCAGTAAGAT 13962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CTCCTAGTGG TGGAAGAGAT AGGCCAGACC CTGTTACAAA AGAATGGTAT CCA....... 277 TCCTTTTTCT ATTTAATAAT TATAGTTGTC TTTCCATATA TTTATCTTTT CATTCTATTT 13902 .......... .......... .......... .......... .......... .......... 277 GATGGACATA CCTGCAAACA TGGCCAACAT ACATTTCTCG ACAAGGTATT TTCTCCGTTT 13842 .......... .......... .......... .......... .......... .......... 277 CATTCATATG ACTATGTTTG TACAGAGGAG GGGGTTTAAT ATATTAATTT GACTCTGTAT 13782 .......... .......... .......... .......... .......... .......... 277 CTTAATAGTG GCAGTATAGG AAATATTTTA AATAGTGGTT CAAAAGTTAG TTTTATGAAG 13722 .......... .......... .......... .......... .......... .......... 277 AACACTGAAA CAAATTTGAT TTCTTGGAAG TCGTATAAAA CAATAATCTA AGTGGAGTGG 13662 .......... .......... .......... .......... .......... .......... 277 TGAAAACATT TTGAGAAGTC CCATAGTTGA AAAGCTACCA TAATTTGAAG GAGGAAGTGT 13602 .......... .......... .......... .......... .......... .......... 277 TGCTACCTTA TTCATTCTTT TAAGTGATTC TTAATTCCTT TGTGGGCTGA TTTGCTATCC 13542 .......... .......... .......... .......... .......... .......... 277 CTGCCTATGA AATATAGGGC AAGCCTCATA CATCTTCTGA ATTACATCTG ATGCCAGTTT 13482 .......... .......... .......... .......... .......... .......... 277 ACATCTTAAG ATTTTCTTCC ACGACTTAAC TGTTCTGTTC TTGATTGCTT CCATTTCCTT 13422 .......... .......... .......... .......... .......... .......... 277 GGTGAGGTTG TTCTTGACTC TTTAAGAGAA TAGTCATCTG CAGCCGTGTG CTGGCACATT 13362 .......... .......... .......... .......... .......... .......... 277 TATGATTCAG TTCTCAGAAT GTGATTGGCA TTATTTGCCT GAACTTTAAA TGAGAGTTAA 13302 .......... .......... .......... .......... .......... .......... 277 CTGTTCGTAT CCAATTGGGA TTTACATGGA TACATGCTAT GGTTCACTGC TTCTTCCTAT 13242 .......... .......... .......... .......... .......... .......... 277 TCTGTATGTT CAGCAATACA CTTCTCCATT ACACTTGCCT TGTGACAGTT CTAGGGTGAT 13182 .......... .......... .......... .......... .......... .......... 277 GTTGATAAGC GTGATAATAT CTCTTCTTCT CCAGCATAGT TCTATGTATA TGATGGGCAG 13122 .......... .......... .......... .......... .......... .......... 277 TTAGTTTCAA AAGTTTTGGT ATTTATGCTT CGTCATGATG CTTAATTAAG AGCCATTTTT 13062 .......... .......... .......... .......... .......... .......... 277 TTAACATTTA ATTTTTTTTT CCAAAAGAGC CAGATCCATA TAGGTAATAT CAGTTAGTTA 13002 .......... .......... .......... .......... .......... .......... 277 AGACGCAGCT AATTATTTTT CAATGAACAG GTGTTTGGTT TAGATAAACC ATAATTGCCT 12942 .......... .......... .......... .......... .......... .......... 277 TTAAAAGGCC AAGTATTATG CATTGGAATG AAATGGGCCT GAATGGATAT AGAGGAATCA 12882 .......... .......... .......... .......... .......... .......... 277 TATAACAGAT TCCAACTGAT CTGTTGATTA ATTGATTTTG AGCAGCTTGT GGTTGAACAT 12822 .......... .......... .......... .......... .......... .......... 277 TTTGCTTGTA TTTCTTCAGG CACCATTTGA TGCTTCCGCG ACAGACAACA TGAGGAGGCT 12762 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G CACCATTTGA TGCTTCCGCG ACAGACAACA TGAGGAGGCT 318 TGTACAACAT GCTGGTGTCC CTGGTCACAT TTATCCTCTA GCAATATTGT GCCATGATAT 12702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACAACAT GCTGGTGTCC CTGGTCACAT TTATCCTCTA GCAATATTGT GCCATGATAT 378 TATGCCCCCT CCCGCCCAGG TTGGTCCTGT GTCAATTATG TTTGTTTCTG TGATGACTAT 12642 |||||||||| ||||||||| TATGCCCCCT CCCGCCCAG. .......... .......... .......... .......... 397 GTTTTTTTAC ATATCCCTGC TTGCGATAGT ACAGGTTGAG AAAAATATCG GAGAGAAAAG 12582 |||||| |||||||| | |||||||||| .......... .......... .......... ....GTTGAG AAAAATATTG GAGAGAAAAG 423 AGTTGTATCT TTTCATGGAG CTGGCATATC TGTGGCACCC AAAATTGATT TTCATGAGGT 12522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGTATCT TTTCATGGAG CTGGCATATC TGTGGCACCC AAAATTGATT TTCATGAGGT 483 TGCTGGTGCT TTGGAGGACC CTGAGGTTAG TTTTTATGGG AAGTCCACTT TGGTTTAATA 12462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGGTGCT TTGGAGGACC CTGAGGTTAG TTTTTATGGG AAGTCCACTT TGGTTTAATA 543 CTTCAAATTA TTGGAAGCTT TTCTTAAACT AAATTTGGCA GCCTAATGAG AGGTTTAGTG 12402 ||| |||||| |||||||||| || | ||||| |||||||||| |||||||||| |||||||||| CTTTAAATTA TTGGAAGCTT TTTTAAAACT AAATTTGGCA GCCTAATGAG AGGTTTAGTG 603 ATATTTGTTG GTGAACCTT- -----TTGGG GGGGGGGG-T CATTCTATTT AATAGAGAAT 12349 ||||| |||| ||||||||| ||| |||||||| | ||||||||| |||||||||| ATATTAGTTG GTGAACCTTG GGAAAGGGGG GGGGGGGGTT AATTCTATTT AATAGAGAAT 663 GAAGGAGGAG AAGGGAAGTT GGACCAAACT CTTTCTCTTT CCTATTTGAG ACCCAAATGA 12289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAGGAG AAGGGAAGTT GGACCAAACT CTTTCTCTTT CCTATTTGAG ACCCAAATGA 723 ACAGCTAGTT GACCTTTGCT AAGAGGGGCG CAGGTTCAGC AGAAATTTTG ATTCCTGCAG 12229 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||| ||| ACAGCTAGTT GACCTTTGCT AAGAGGGGCG AAGGTTCAGC AGAAATTTTG ATTCCTTCAG 783 TTGAGCTTTT TCTTGTTGGA AAAGTTAAGA AGTAAAGCTC CAAAGGAACT TTCAATATGC 12169 ||||||||| |||||||||| |||||| | |||||||||| |||||||||| |||||||||| TTGAGCTTTC TCTTGTTGGA AAAGTT---A AGTAAAGCTC CAAAGGAACT TTCAATATGC 840 AAATAAAACA TTCATCTA 12151 |||||||||| |||||||| AAATAAAACA TTCATCTA 858 hqPGS_C08HBa0320P23.1-_SGN-U336404- (15041 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12151) ******************************************************************************** EST sequence 16 +strand 415 n (File: SGN-U333370+) 1 GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC GTATCCAATT 61 GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA TGTTCAGCAA 121 TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT AAGCGTGATA 181 ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT TCAAAAGTTT 241 TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA TTTAATTTTT 301 TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC AGCTAATTAT 361 TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA GGCCA Predicted gene structure (within gDNA segment 13945 to 12321): Exon 1 13345 12931 ( 415 n); cDNA 1 415 ( 415 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-U333370+ 1.000 415 1.000 C PGS_C08HBa0320P23.1-_SGN-U333370+ (13345 12931) Alignment (genomic DNA sequence = upper lines): GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC GTATCCAATT 13286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTGATT GGCATTATTT GCCTGAACTT TAAATGAGAG TTAACTGTTC GTATCCAATT 60 GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA TGTTCAGCAA 13226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTTACA TGGATACATG CTATGGTTCA CTGCTTCTTC CTATTCTGTA TGTTCAGCAA 120 TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT AAGCGTGATA 13166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACTTCTC CATTACACTT GCCTTGTGAC AGTTCTAGGG TGATGTTGAT AAGCGTGATA 180 ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT TCAAAAGTTT 13106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTCTTC TTCTCCAGCA TAGTTCTATG TATATGATGG GCAGTTAGTT TCAAAAGTTT 240 TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA TTTAATTTTT 13046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTATTTAT GCTTCGTCAT GATGCTTAAT TAAGAGCCAT TTTTTTAACA TTTAATTTTT 300 TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC AGCTAATTAT 12986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCAAAA GAGCCAGATC CATATAGGTA ATATCAGTTA GTTAAGACGC AGCTAATTAT 360 TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA GGCCA 12931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTTCAATGA ACAGGTGTTT GGTTTAGATA AACCATAATT GCCTTTAAAA GGCCA 415 hqPGS_C08HBa0320P23.1-_SGN-U333370+ (13345 12931) ******************************************************************************** EST sequence 13 -strand 911 n (File: SGN-U328267-) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAAAC ACAAATCCCC TAACTTTGTT TCTGTATTCA CCATGCGATT 841 AATCGCGTAT ACTGATGTAT ACAACCTTAA GACCTCGTTT AAGATCATTG TAACCACTTT 901 TAGTTGATTC A Predicted gene structure (within gDNA segment 26671 to 17037): Exon 1 25795 25760 ( 36 n); cDNA 70 104 ( 35 n); score: 0.611 Intron 1 25759 25429 ( 331 n); Pd: 0.448 (s: 0), Pa: 0.969 (s: 0) Exon 2 25428 25401 ( 28 n); cDNA 105 131 ( 27 n); score: 0.536 Intron 2 25400 24743 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.412 (s: 0.94) Exon 3 24742 24477 ( 266 n); cDNA 132 398 ( 267 n); score: 0.763 Intron 3 24476 23560 ( 917 n); Pd: 0.588 (s: 0.78), Pa: 0.996 (s: 0) Exon 4 23559 23542 ( 18 n); cDNA 399 417 ( 19 n); score: 0.528 Intron 4 23541 19388 (4154 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 5 19387 19337 ( 51 n); cDNA 418 467 ( 50 n); score: 0.686 Intron 5 19336 18987 ( 350 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 6 18986 18980 ( 7 n); cDNA 468 473 ( 6 n); score: 0.714 Intron 6 18979 18008 ( 972 n); Pd: 0.900 (s: 0), Pa: 0.915 (s: 0) Exon 7 18007 17989 ( 19 n); cDNA 474 491 ( 18 n); score: 0.684 PPA cDNA 12 1 MATCH C08HBa0320P23.1- SGN-U328267- 0.751 425 0.467 C PGS_C08HBa0320P23.1-_SGN-U328267- (25795 25760,25428 25401,24742 24477,23559 23542,19387 19337,18986 18980,18007 17989) Alignment (genomic DNA sequence = upper lines): CAACCGCTAC CTCTCTCTGG GACAATAAAT ATAAAGGTTT TGTTTTGCAA ATAAGGGTAA 25736 |||| | || || || | || |||| | | | | CAACATATGA CT-TCACTTG AACTATAATT AAAGAA.... .......... .......... 104 AATTGCACAT GGACTAAACA AAAATTAATG TCTATTCAAA TCTTCAAAGG CTTATTCTCC 25676 .......... .......... .......... .......... .......... .......... 104 TCTCATGTAT GTCCCACTCC ATATATTATT GCGTTAAAAG TATTTTCTTA ATATTTTGTT 25616 .......... .......... .......... .......... .......... .......... 104 TATAATTATG AGATATACCT TAAAGTATAG TTTAATGTAA GAAAGAATAT TCACACTTTA 25556 .......... .......... .......... .......... .......... .......... 104 TTTGCCCCAC TAACTCATGC GCGTGGAAGA AATTAATTTA AATATATTTT CATCTCTAGA 25496 .......... .......... .......... .......... .......... .......... 104 TATTTTTCTT AACGTGTGTT TGATTTTTTA AAAATATTTT AATACGTAAT TTAATAAAAT 25436 .......... .......... .......... .......... .......... .......... 104 ATTATAGAAA TAAGATTGAA TAGGCGGAAG TGGAGTTTGG TGTTGGTTGG AATGGTCGAG 25376 || ||| | || | || ||| | .......CAA TAA-AGGGAT AATGCACAAG TACCC..... .......... .......... 131 CGATGGGGTT TGGATGAGTT TGGTGGTGAT AGCGAACTTT TAATTTCAAT TTCGAAGTGT 25316 .......... .......... .......... .......... .......... .......... 131 TTTTTTTTTT TTTTTACATT TCCCTTAAAA AAATTAATAT TTTTATTTTT AAAGAATTAA 25256 .......... .......... .......... .......... .......... .......... 131 TTTTTCTAAA CTTTTTAACC CGTCAACATA AAAATAAAAA ATATTCTTGA AAATATTTCC 25196 .......... .......... .......... .......... .......... .......... 131 TATATAACAG ACACATAAAA GGATCCTTTG GTACGCATAC TAAATTATGT TGGTACTATA 25136 .......... .......... .......... .......... .......... .......... 131 AATTTCGAAC TTATTTATCC CCAATAAAAA ATGAGAAAAA TATCAAAATT GAATTATACG 25076 .......... .......... .......... .......... .......... .......... 131 TTCATACTTC ATGCCATTAA TTAAATACAA TATAAATTTT ATTTCATCCT TATTCTTAAA 25016 .......... .......... .......... .......... .......... .......... 131 ATACCCCCAT CTTATTCAAC CCCTCAATTG GAAATGAGTT TTACCATTCT TATATTCTAT 24956 .......... .......... .......... .......... .......... .......... 131 CATCATTTTT TTTCTTCACA AAAACAAAGT TTTAACAAAT GTCTTCCCTC ATCTCGTCGG 24896 .......... .......... .......... .......... .......... .......... 131 GACGTTATAT TTTCAAAAAT AAAAATAAAT TATATTTTTT TTCTTCAAAA AGTATTCAAG 24836 .......... .......... .......... .......... .......... .......... 131 TAAGAACAAA ATGAATTTTT CCATGCTAAA CTTATGGGAT TATTTTGTTG AAAACAACTT 24776 .......... .......... .......... .......... .......... .......... 131 ATACCGTCAT TCTTTTTTGG GATAATGTCA TAGTCTCAAC CTATGCCCGA AATCTCAGAG 24716 |||||| |||||||||| ||| ||||| .......... .......... .......... ...CCTCAAC CTATGCCCGA AATTCCAGAG 158 ACACACTTAT ACTATACTAA GGTCCTATTA -CCTCCTGAA CTTATTTTAT TAATAATTTT 24657 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| | ||||||| ACACACTTAT ACTATACTAA GGTCCTATTA CCCCCCTGAA CTTATTTTAT AAGTAATTTT 218 TTACCCCTTT TTAGCTTACG TGGCACTATC TTATGGACCC AACGATGATT GACTTTTTTT 24597 ||||||||| ||||| |||| |||||||| ||| | | | | | | CTACCCCTTT TTAGCCTACG TGGCACTAGT TTAAAAAAAA AGTCAACAAC CATTGGGCCC 278 TCGAACTAGT GCCACATATG CTAAAAAGGG GTAGAAAATT ACATATGAAA TAAGTTTA-G 24538 | | |||| ||||| || | ||||||| ||| |||||| | || ||| |||||| | | ACAAGATAGT GCCACGTAGG TCTAAAAGGG GTAAAAAATT A-TTAATAAA TAAGTTCAGG 337 GGGTAATAGG ACATTAGTAT AGTATAAGTG TTTCTATGAG ATTTCAGGCA TAAGTTGAGG 24478 |||||||| | | ||||||| ||||||||| | ||| |||| |||| | || || | | ||| GGGTAATAAG ATCTTAGTAT GGTATAAGTG TATCTCTGAG ATTTTGGACA TAGGCTAAGG 397 GGTACTTGAA TATTTTCTTT TTTTTTTCAA AAAAAAAGTT AATAATTATT ATAAGCCAAA 24418 | G......... .......... .......... .......... .......... .......... 398 TCATCCCACA CATACAATAA TTTATTTATC ATTTAGTAAG ATTAGGAGTA GAGTTAGGTG 24358 .......... .......... .......... .......... .......... .......... 398 AAGTTTCATG AGTTTGGACG AAATTATTAG TTAGTCTATA GACTCTATAT ATAAACTTGT 24298 .......... .......... .......... .......... .......... .......... 398 CATAACAAAA TTAATTCACA ATTAATAGTA AGGAAAGGGA GATAGAAATG TTTTTTACAC 24238 .......... .......... .......... .......... .......... .......... 398 TAGTGATTAT AGGTTCAAAT CGTTCTAAAA TTTAAAATTT TCCCATTTCT AGTTTTGATT 24178 .......... .......... .......... .......... .......... .......... 398 CCACCTTTGA GTGAAATAAT AATTTAAAAT TTTCATACTT CTAATTCTGA TTCCCCCTCT 24118 .......... .......... .......... .......... .......... .......... 398 AACTAAAATA AATAATTTTA AAACTGCTTA ATATTTCGAA CTAATACTTC CCTTTCATTG 24058 .......... .......... .......... .......... .......... .......... 398 GAGAGAAGTT ACTCAAAGGT TGGTCTAATA GGCTATTGCC ACTATTTCAA AAGAAGGGTG 23998 .......... .......... .......... .......... .......... .......... 398 TATAGTTGTT ACACGTGTCC AGATAAGACT AGCTTAGTTC CATATAAAAG CCAATGAAAT 23938 .......... .......... .......... .......... .......... .......... 398 AAATGAAGAA GTATTTTCAG ATAAATAACA AAAAAAAGAA AGAGAAGAAA AGAAAAACAC 23878 .......... .......... .......... .......... .......... .......... 398 TCAAATAACT GTATCACAAA ATTCACACAC ACAATTGGGT GATGGAAAGC ACGTGCTCGT 23818 .......... .......... .......... .......... .......... .......... 398 TCCTGATAAA ACACTCTCTC TCCCTCACAA CACGCATATA TTCATTTCAC TCCTCACTTT 23758 .......... .......... .......... .......... .......... .......... 398 TTTTCTCGAC CCTTTCTCTC TCTAAACCTC TCCATTCTGT GGTGGTGATG TTGATCCTCT 23698 .......... .......... .......... .......... .......... .......... 398 CAGCGGCTTC GTCTTCTTCT TCTTCTTCTT CCTCCTTCAT GCTTTCTTCC GCTTCGTCTT 23638 .......... .......... .......... .......... .......... .......... 398 CTTCTGCACG CATTCCGAGG CCGTTATCTT CATTTTCAAC TTGTGTACCA GTAGTAGTAA 23578 .......... .......... .......... .......... .......... .......... 398 CAACTGTTTC TTCTGCAG-C AACTTCGACG CTATTCCCGA TTTCCTGTTT CGGTGTGAAA 23519 |||| ||| ||| || .......... ........GG TACTTGGACA TTATCCC... .......... .......... 417 TCGAGGACGG TTGGGATTCG GAAGCTACGG TGTGCCGTTT TTTGTGCTTC GAAGGTACGT 23459 .......... .......... .......... .......... .......... .......... 417 GGAATGGCAG AAATGATTGA AGATGCCATG ACAGTTTCTG CTTCTGAGAG TCATGAGCTT 23399 .......... .......... .......... .......... .......... .......... 417 CCGCAGTCCC GAGACTTCCT TGACGCACGC ACTGGAGAAG GTTTATCTCT AGCTATTATT 23339 .......... .......... .......... .......... .......... .......... 417 ACTTTTTCTT TAATTTGAAA TATCTTGTGC ATTTTTTGCT TTCTATTGCT ACTTTCGCTT 23279 .......... .......... .......... .......... .......... .......... 417 TTTTCATTTT TGAATTTGAA GTATCTTGTG CATTTTGTGC TATTTTCGTG CGGTTTGTTA 23219 .......... .......... .......... .......... .......... .......... 417 CTCTTGTTCT CTGTTGGAAT ATCTTGTGCT ATTTCGGTGG GGTTTAACAT TTTGTGCGTA 23159 .......... .......... .......... .......... .......... .......... 417 TTATGCCAGA GACTGTTGTA CACATTCACG CTACAATGTT TGTTTTCTTT CGAATGCATT 23099 .......... .......... .......... .......... .......... .......... 417 GAATTTCTCA ATATTCTTCA CAATTAACAA TGCTGAACAT ATGAGGCGCG TTATTACATT 23039 .......... .......... .......... .......... .......... .......... 417 TGCAGAAGTG CATTTATTTT TTGTTAATTT GCCCTATGCT TGTTGCTCTG AAGAAAATGT 22979 .......... .......... .......... .......... .......... .......... 417 GTTGAGCCCA TAGTTAAATT GAACTAATAT TGCATTTAGC ATGGAGTTAA CTGTGAATTT 22919 .......... .......... .......... .......... .......... .......... 417 TGTCAAGTAA TAATTTCTTT GCCACATAAA CTATTGAACT CTATGTCCAT GGTGAAATTA 22859 .......... .......... .......... .......... .......... .......... 417 AACATCGTTA TCTAATGTTG TCTACTCTTT GGTTTTTCCT ATAAGTCCTA TCAAATAGAC 22799 .......... .......... .......... .......... .......... .......... 417 TTGTAGTACA TCAGTTCCAT TCTAGGAGAT GAATTGGTTG GTTGCAATAG CAGTTTCAGT 22739 .......... .......... .......... .......... .......... .......... 417 AGTGGTATTA ATGAAATTGG TGTTGGCATA AGGTTGCAAT AAGAGTACTT ATCTGTGCAA 22679 .......... .......... .......... .......... .......... .......... 417 GCATGCTTAA CAGTTTAAAC ATCAAGTCAA TGAGTTCTTT TAACCTTGAT GCACCGGGTA 22619 .......... .......... .......... .......... .......... .......... 417 TAGTATGTTT TGATCTTTCT AGTAATCTAT GGTGATATCT ATTAGGACGG ACTTACAGTA 22559 .......... .......... .......... .......... .......... .......... 417 AGCTCAACGA TTGTTTTATT TTTAACGGTG AACTGGATGT ATTGTCTATG AAGCACGTCA 22499 .......... .......... .......... .......... .......... .......... 417 GTTGGCTTTG TTGGGTCTAA CTTTATAAGG GACTTCTCGA ATGGATAGTT AGCAGAACTA 22439 .......... .......... .......... .......... .......... .......... 417 CACTTGAGGA ATGGTGCTAC TATAATGTAA CACCAATCCA TCTTGATGGA AGTTCTCGTT 22379 .......... .......... .......... .......... .......... .......... 417 AACCTGTGGA TGGTGAAGGA CTCGACAAAT TTATAGTGGA TGGGATGATG GGAATGATAT 22319 .......... .......... .......... .......... .......... .......... 417 CAATTGAAGA GTAAGGTGAA ATGATTAGGA GGTGGAAGAT CTTGTTATGA ACACCAAATC 22259 .......... .......... .......... .......... .......... .......... 417 AAACAGGCAG ACAAGCAACA GTGGATTGTT AAAGAGAAAT AAGACGCTTA TTGGTTTCTA 22199 .......... .......... .......... .......... .......... .......... 417 TTCACTTTCT GCTTTCTCTT TTGCCCCCCA TTTGGTGTGA AGGATTTAAT TGCTGTGAGG 22139 .......... .......... .......... .......... .......... .......... 417 TAGAATCTAT AGACTAGTTT GCATTCATGG AGATTCTGTA ACTATTCCAA AGAGATGGGA 22079 .......... .......... .......... .......... .......... .......... 417 AGTTCGAGAC AATTGAGGTT TTTTCTTGAA ATTGGAAGCA ATTACTAATT CATGGTAGGA 22019 .......... .......... .......... .......... .......... .......... 417 CATGTACTGA TGTACATAGT AAAAACTTCA TTCTCGAATT CTCTGAGAAC TTATGTTGAT 21959 .......... .......... .......... .......... .......... .......... 417 AATTTTTTAG CAGTTGGTTA GGCAACAATT ATTTTTCATA GAAGTACTCT TTTGTTTTGT 21899 .......... .......... .......... .......... .......... .......... 417 ACAACAAGCT TTCTCTAGAC TGTGTTTCAT ATTTGACATT TATTATGGAC ACGTGAAGTT 21839 .......... .......... .......... .......... .......... .......... 417 TTGATGGTTG ATTCTGGAAT CACCAATTTG CATATTCATA TTTGGGACAT TGAAGTCACC 21779 .......... .......... .......... .......... .......... .......... 417 AATTAAGACA AAAGGATCAA ATTTTGACAT TTTGTGGTAG TATCTCGTTT TTAGCTTTCT 21719 .......... .......... .......... .......... .......... .......... 417 TTACAAAATT GTATTGCTAT ACAGTATCTC TTGCTCCCTG TCTTTACAGT CACCATTCAA 21659 .......... .......... .......... .......... .......... .......... 417 TCTCTGCCTC CCTTCATTTG ACTGCTTTTT TGTCTACCGC TATGCATGCG TACTCCATTC 21599 .......... .......... .......... .......... .......... .......... 417 TATTACTGAT GGTTGGTGAT GTATAGTTGG TTCCTTCTCT GGACATACAC TAGGTTATTA 21539 .......... .......... .......... .......... .......... .......... 417 TGGTAACTTT AGCTTGGTTA AGTAATGCTT GGCAGTTTCT GCATTTTTTT TAAATGTATA 21479 .......... .......... .......... .......... .......... .......... 417 GATCTCCTCT TGATCGACAA CAAAGTCATT ACTTCGTATG AAGCATTCGT GGATCTTAGT 21419 .......... .......... .......... .......... .......... .......... 417 TTCAAGCTAG CTTACACTTC ATTTTGTCGT ATCTTAGGAT CTTAGTTTCA AGCTAGCTTA 21359 .......... .......... .......... .......... .......... .......... 417 TACTTCATTT TGTCGTATCT TACAAGTCTC AGAACCTATG CAGGTATTGT AAAAAACATG 21299 .......... .......... .......... .......... .......... .......... 417 ACCTAGTTGG ATCTTTTTTC CGATAACGCG TCACCTAGTT GGATCTTGAC TGACATAACA 21239 .......... .......... .......... .......... .......... .......... 417 CACACTCATA CTATGTTTGC ACTTTGAATG TGGTTTCTTA TTCATTTGAG AAACAGAAAC 21179 .......... .......... .......... .......... .......... .......... 417 AAATACGATG CTGAAGACTT ATGTGGTTTG TATGCTATTC TGATAGATTT TCGTTTCAGT 21119 .......... .......... .......... .......... .......... .......... 417 AAGTAGTTTA GAATGTGGAT TGGAAGCTTA GTTTTCTTTC TGATTTTGGT CTTCAACTCC 21059 .......... .......... .......... .......... .......... .......... 417 TTTTGGATCT TCCTTATTGC TTTCTGGGGG ATTTCGATTT TCCTGGTAAT TGTCATGATG 20999 .......... .......... .......... .......... .......... .......... 417 TCGTAATCAT ATACTATCTT AATACACGTA AGTGTGCCAC AGTGGCATAA GGGGGATTAC 20939 .......... .......... .......... .......... .......... .......... 417 CTATGTAAAG AAAATTACAT AAAGCAGTTA AAGCACTATA AACTAGGTCA TCTCCAATGA 20879 .......... .......... .......... .......... .......... .......... 417 TATAATCTTA TATGGACTAG AATAGGATTT TCAGCAAGAA GTACATTTAA AGAACCGTGA 20819 .......... .......... .......... .......... .......... .......... 417 CTTAGCATAA ATGTTAAAAT TATTGTACAA ATGCGGTCTT AAGTTTCTTG TAAAACAGGA 20759 .......... .......... .......... .......... .......... .......... 417 TGAGGTATAA AGTTGTGATT CTCAGAATGC TTCCTATTAG ACTTTAATGG AGCAGTTTTC 20699 .......... .......... .......... .......... .......... .......... 417 CTTCTTTTCC ATGACTTGTT TTTCTTTTTT TGATAACCAC GGTGTCTGAG CACAAGTACC 20639 .......... .......... .......... .......... .......... .......... 417 TGGTAACTGT GCCTATCAAG GATTGGATAT ATGGCAAAAA GTCATTTTTT GAAAATTAAA 20579 .......... .......... .......... .......... .......... .......... 417 ATATGGCTGA AAATCTGGAG TGCTTTTTTT CTGTCTTTTT GGTAAACTTG GTATAATCTT 20519 .......... .......... .......... .......... .......... .......... 417 CTCCTTTCTT TTTTCTTTTC GGGCTGTGGC TTGTGTCTTG TGCCTTGACA GACATCTGAA 20459 .......... .......... .......... .......... .......... .......... 417 GCAGTTGTCA ACCAGCACTG TCTGTCCTAG GGGCTGGTCA TCTACATGAA ATTTTACAAA 20399 .......... .......... .......... .......... .......... .......... 417 CTTGGTCTTT AAAACATGTC ATGTCTTAGA GGTTAGTCAT CTACATGAAG TCTTACAAAG 20339 .......... .......... .......... .......... .......... .......... 417 TAGGGTCTTA GATACATATC ATCTTGTTGG CTTATATTTT TGACAGGTGA TATGGGATCA 20279 .......... .......... .......... .......... .......... .......... 417 GGGATGAGTG CAGTATATGT TGCAAGGTAT ATATAAATAT TTGTCAAGGT AATCAGATAG 20219 .......... .......... .......... .......... .......... .......... 417 CTTGAGTCTT ATACTTGTCT TATACATGTT GTATACTTGG TACTTCTTTG GGATTTGAAG 20159 .......... .......... .......... .......... .......... .......... 417 TATCTCATAG GTTTTTTCGT GGTGTCTAGT TTCCTTTGAA TACTTGTATG CTTCAACATT 20099 .......... .......... .......... .......... .......... .......... 417 TATGGGTGCA TTACCATATG GAACTATTTA TTGATATTAA TTACCAATCA ACAAGAGAAA 20039 .......... .......... .......... .......... .......... .......... 417 CCGTGAACAT CTGAGTAAGG GTTGGTATTG CAAGTTATAG TTCAAGAATA GCGGAAGTGC 19979 .......... .......... .......... .......... .......... .......... 417 TGCAATATTC TAGAAAACTT CGTCTTAAAA GGATTTAGAT ACCTACTCAG ATGTTAGTGG 19919 .......... .......... .......... .......... .......... .......... 417 CAGTTGCAAG TATAAGACAT TTGCTGCCGA TTCTTATCTA CTCATCCTGC TATCTTTTCA 19859 .......... .......... .......... .......... .......... .......... 417 GTTGCAAGTA TAAGACATTT GCTGCCGATT CTTATCTACT CATCCTGCTA TCTTTCAGTG 19799 .......... .......... .......... .......... .......... .......... 417 TCTTGATTCT ATTGTTTGCT AAATTTAAAC ATACTGCTCA GCAGATGATT CCCTTGTTCT 19739 .......... .......... .......... .......... .......... .......... 417 TCTGCGGGGA CTTTATTTTG GTAGATCTAT TCTAATTGTT CTGATTGAAC CTGTGTCTCT 19679 .......... .......... .......... .......... .......... .......... 417 CTTTCCCCCG TGCATTGGGT GTTCTATTTT CTGTGCAGAC TTGCTATCTG CTGTTCGAAA 19619 .......... .......... .......... .......... .......... .......... 417 AGCTGTGGAA GATGAAAAAC TGCCACTGAA TGTTGCTGAA GGAATGGAGG AGTTGTATCA 19559 .......... .......... .......... .......... .......... .......... 417 GAACTATCAG AATGCAGTAA AACACCTTTC TTTGAACTTG TGGTTAAATG TACTCTTTTA 19499 .......... .......... .......... .......... .......... .......... 417 AGTGTTGGGT CATGGGTGCT TTGTTCGCTT AGATATGTTT GCTCATATGC AAGAGTCTTC 19439 .......... .......... .......... .......... .......... .......... 417 TTGCATGAAC ATACTTTCTG GGTCATAACA TGCTTTCTTA AGTTACTAAA GAACAGTATA 19379 |||| || | .......... .......... .......... .......... .......... .AACAATAAA 426 TAATAGATTT AAGATGGTTG AGAATACAAT TAAATAATAA ACGTGTGCTC TCTCTAATGG 19319 ||| ||| | || ||| || | || |||| | | |||| | TAAAGGATAT AACATGATTC AAAAGACAA- CACGTGATAA CC........ .......... 467 CTTAGGCTTT TAGATGAGAT GGTTACACAC TTCAACAATG ATGAATATTT TTTTTCTTCT 19259 .......... .......... .......... .......... .......... .......... 467 AATGTATTTG ATCATTTGAA TTTAGTGGAT GGTATTATGT AACTACACGC TGTTGGTATA 19199 .......... .......... .......... .......... .......... .......... 467 AAAAAAGTTC ACGTTGTACC TATAACAGTA GATAAAACGC TGGAGCTGGA AAAGCTAAAG 19139 .......... .......... .......... .......... .......... .......... 467 TGGAGAGAGA AATCACAATT TGGCATGCCA TTACTTTTTT GTGACCAATT ATGTGGAAAG 19079 .......... .......... .......... .......... .......... .......... 467 ACATTATTAC GGGGCCAAAT GTTTTCAGAA AATGACCTGA AGATAATAGG TTAAGCCCTT 19019 .......... .......... .......... .......... .......... .......... 467 GTGAAGATTC TAAATGTAGT CTAACATTCA ACACGTTCAG TATCATTTCT TCCTAGAGCA 18959 || ||| .......... .......... .......... ..AC-TTCT. .......... .......... 473 TGGAAAATAT GATCTTGTGA TGACAAAACA ATAATAAAGA TAAATCTAGA GGAGGTGCTT 18899 .......... .......... .......... .......... .......... .......... 473 ATATTTGTAT GTTTGTCTTT GCCTGATTTT TCCGCACGTG TCTTTCTTGT TCCTACTTCT 18839 .......... .......... .......... .......... .......... .......... 473 CTAGTATATC TTATTTTCAC TAATAAATAA TAACTCGCCT CCTCCTTCCC TCTTTCCTAC 18779 .......... .......... .......... .......... .......... .......... 473 TAAATTTTAG AGAATTTCAT TTATTTCATT CTTGGAAAGA CTACTACTTT TGGACTTACC 18719 .......... .......... .......... .......... .......... .......... 473 ATATTTGGTG AAGTAATCCA ATCTATCTTT TAGACTTGTC AGATTATCAA TCTGTTTGGA 18659 .......... .......... .......... .......... .......... .......... 473 TTTAATTTAT TCATGATACT CGTGCGCTTT TCTTTGAGAG AGAACGAGTT TGTTGAGACC 18599 .......... .......... .......... .......... .......... .......... 473 TGGAGTTCGG CATTTTCTTT TTTGTTTATT TGGAGAACTT GTTGTGGTCA TGTGCCCTCT 18539 .......... .......... .......... .......... .......... .......... 473 TGATTTTTCC TGATCGTTTT TTATAGGTTT TACAAAGCGG CGTTCCCAAA GCAGATGAGG 18479 .......... .......... .......... .......... .......... .......... 473 CCATTTTGTA TAACATGGCT CTTGTATTCG ACCGTGTTTT TGTGGATGTG AAGGTATTCT 18419 .......... .......... .......... .......... .......... .......... 473 TCTGCCGTGT TGATCTTTCA AATTCATGCT AGAAGTTTCC CCTATATCTT TGTTTCTCGT 18359 .......... .......... .......... .......... .......... .......... 473 TACTTCATCT AAGCACACAT GTATTCTATC AAGTTGTTAG AATGTAAAAT TGTAAAATGT 18299 .......... .......... .......... .......... .......... .......... 473 AGCAATGCTC TTATTTCAGG ATCCTTTTGA ATTCTCGCCG TATCATAAGG CCATTCGTGA 18239 .......... .......... .......... .......... .......... .......... 473 ACCTTTTGAC TATTACAAGT TTGGTCAAAA TTATATCCGC CAGCTAGTTG ATTTCAGGTG 18179 .......... .......... .......... .......... .......... .......... 473 AGTCTCAGTT CTCTCTCTGT AGTGTGTATC ATGTAATAGT TTGACTAACT TAAAAAATGC 18119 .......... .......... .......... .......... .......... .......... 473 GCGGTTCTTT CAATCTTGTT AATGATTGAA TTCACAGGAA ATATTCGAGT AAACAGCTTA 18059 .......... .......... .......... .......... .......... .......... 473 AAATATCCTT TGATTTACAT CCTTTTGTCG TTGTAATATT TGCTTGTTCA GATCAACGTA 17999 | |||| | .......... .......... .......... .......... .......... .A-CAACTTG 481 TTCAAGACCA 17989 | || || || TGCATGATCA 491 hqPGS_C08HBa0320P23.1-_SGN-U328267- (24742 24477) ******************************************************************************** EST sequence 25 +strand 676 n (File: SGN-U318547+) 1 GGGCGATTGG CGGCCAAATC GGCCGAATTG ACTCCATCGA AATTGAGGTC ACACAAGAGA 61 ACTGAAGAGT GACAAAAATG GCAAAGTCGT CGGCGACCAA AGACGCCCAA GCTCTTTTCC 121 ATTCTCTCCG TTCTGCTTAT GCCGCAACTC CGACGAATCT CAAGATCATT GATCTATATG 181 TCATCTTTGC GATCTCTACT GCCTTAATTC AGGTGGTATA CATGGCTATT GTTGGATCAT 241 TTCCATTCAA CTCTTTTCTC TCTGGGGTGC TTTCTTGTAT TGGCACAGCA GTCCTTGCTG 301 TTTGTCTTCG GATCCAAGTA AACAAAGAAA ACAAGGAATT CAAGGATTTG CCTCCGGAAC 361 GTGCTTTTGC AGATTTTGTT CTCTGCAATT TAGTGCTCCA TTTGGTGATC ATGAACTTTC 421 TTGGCTAGAT TGAGGCACCA AATCTTGAAA ATGTTGCTCT TACAAATCTT GGTGATTTTT 481 ATGTAAGAAT AATATAGAGT CAATCGTAAA GGATTTTGTT AGGCTTTCGG AAATATTAAG 541 TTTCTCATGC ATGAAACTAT TTTACATTTA TGAATCTTAT ATGAGTATTA GTAAGTAGAC 601 AATCTTTGGC CCTTCAAAAA AAAAAAACCC AAAAAGGAGC CAAACTTTTT CTGTATCAAA 661 AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 32244 to 26681): Exon 1 31342 31211 ( 132 n); cDNA 33 164 ( 132 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 2 31086 31039 ( 48 n); cDNA 165 212 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 3 28327 28240 ( 88 n); cDNA 213 300 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 28156 28113 ( 44 n); cDNA 301 344 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 27847 27541 ( 307 n); cDNA 345 651 ( 307 n); score: 0.967 PPA cDNA 658 676 MATCH C08HBa0320P23.1- SGN-U318547+ 0.981 619 0.916 C PGS_C08HBa0320P23.1-_SGN-U318547+ (31342 31211,31086 31039,28327 28240,28156 28113,27847 27541) Alignment (genomic DNA sequence = upper lines): TCCATCGAAA TTGAGGTCAC ACAAGAGAAC TGAAGAGTGA CAAAAATGGC AAAGTCGTCG 31283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATCGAAA TTGAGGTCAC ACAAGAGAAC TGAAGAGTGA CAAAAATGGC AAAGTCGTCG 92 GCGACCAAAG ACGCCCAAGC TCTTTTCCAT TCTCTCCGTT CTGCTTATGC CGCAACTCCG 31223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGACCAAAG ACGCCCAAGC TCTTTTCCAT TCTCTCCGTT CTGCTTATGC CGCAACTCCG 152 ACGAATCTCA AGGTAACTGA CTCTCTCCTC GATTCCCGTG CAGCAATTTA CTTTCATACA 31163 |||||||||| || ACGAATCTCA AG........ .......... .......... .......... .......... 164 ACTTTCAAAT CTATACAGTT TCAGTCAATA TTCACGTATT TCTATTGGGT TCTAATTGAA 31103 .......... .......... .......... .......... .......... .......... 164 TTGTTTTTCA TCGCAGATCA TTGATCTATA TGTCATCTTT GCGATCTCTA CTGCCTTAAT 31043 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......ATCA TTGATCTATA TGTCATCTTT GCGATCTCTA CTGCCTTAAT 208 TCAGGTATTT ACTTAACAAC TTTGCTGTCA TTGATCCATT TTCTGTATGT ATGTATCTTA 30983 |||| TCAG...... .......... .......... .......... .......... .......... 212 TGGGGTCAAT CTTATTGCTA TAGATCTGTA ATTATTATGT TCTTACTGTG GTTGTATTGG 30923 .......... .......... .......... .......... .......... .......... 212 TAAAATTTTG GATGATCCAT GTTCTCATAA GCTGTTAACT TTCTAATGTC CTTCGAAATT 30863 .......... .......... .......... .......... .......... .......... 212 TTTATTGAAA ATGTATGTTA TGGGGTTTGA ATACTGATGG CTTAATGATG TCAGTTTAAG 30803 .......... .......... .......... .......... .......... .......... 212 CATTACCTAG ATTGATTTGA TCTTGGTCTA ATGCTTGTTT CAATTGAGCA TCTGATGCAT 30743 .......... .......... .......... .......... .......... .......... 212 TAGAGATATG CTTTTGATGC TAATGGCGAA GTGGCTGAGG CATAATTTTT TTGGGAAGAA 30683 .......... .......... .......... .......... .......... .......... 212 TGTATTATAA GTAGAAAGTG GAGTTTGGGG CGGAGTATGT TTTATGCTTT GAGGGGTATT 30623 .......... .......... .......... .......... .......... .......... 212 ATCTTTTATT CTGTAAAGAA GATTCAAATT CAATCCTTCA ATTGTTCAAA CAACACCAAT 30563 .......... .......... .......... .......... .......... .......... 212 AAGGTTAGAT AGTATTTATT ATGAGAATCT GTCATTTTGG TTTGTTGTGA ATAATTAGCC 30503 .......... .......... .......... .......... .......... .......... 212 TAATCAGAGC TAATATGGGA GGTCTAGAAG GTCACTGTTC CCTCTGTACA TCCAATGAAG 30443 .......... .......... .......... .......... .......... .......... 212 AGTCATTTGG TTTGAGTCAG TTCCGTCATG AATTTTGACG TTACAGTCTG CCAACGTGAT 30383 .......... .......... .......... .......... .......... .......... 212 AGTCACCTTT CATGAATTTT CATAGTAGTT ACTATCCAAT TCCTCTAATC CTTTTTTTAT 30323 .......... .......... .......... .......... .......... .......... 212 AAATCAAAAT GATTTCATTA ATAACACCAA GAGGGTATCA CCATCCAACC ATCTCTTCTA 30263 .......... .......... .......... .......... .......... .......... 212 TATAAAGTAT CCCCTTTTCA GTAAATAAAA TGGAAATAAA GGTCTCTTGT CACCTCATAG 30203 .......... .......... .......... .......... .......... .......... 212 TAGACTCTCT AATCCTCCAA AAAGTTCTTC TGTTCCCTTA TCTCCACATC AACCAAAGAC 30143 .......... .......... .......... .......... .......... .......... 212 ATAAAGGGGA AGCCACTCTA CATGTCCTTC CAGCATCTAT TTCAGGTCTC CACCTCTCCA 30083 .......... .......... .......... .......... .......... .......... 212 ATGTTCCTGT CAGACTCACA GAATTAGGCT GATATTTGAC ATGGGATGTA CCGACAATAG 30023 .......... .......... .......... .......... .......... .......... 212 TTCCATTGTG AACTAATTAT AACCATCTCC TTGTCAAGCA TCTGCTGTTA AAGGTGATTT 29963 .......... .......... .......... .......... .......... .......... 212 TCAACTCTGC ATACCATGTG AAGAAAGTTA GTTTCTTTGG TACCTTTTTC TCCCATACTG 29903 .......... .......... .......... .......... .......... .......... 212 ATCTCTATTT TTTTAAAAAA TCAGCAACTG CGAAAGACAA TCATAATACG ATTCTAAGGC 29843 .......... .......... .......... .......... .......... .......... 212 GGTGATCTTT TCCACATCAC TCTATCTTCT TCCCAAAGCA GTCATGTTTA CATCATCCGT 29783 .......... .......... .......... .......... .......... .......... 212 TTTCCACTCT TGTATGTATC TCTAAAATAA AATTTGACAA TACTTGGCTC CCTTCTCTTC 29723 .......... .......... .......... .......... .......... .......... 212 TGAGGAGTTT GTCTGCTGTT GCTTCTTTGT CACTATCCTT TAGAAGTTGG ATCCGAATAC 29663 .......... .......... .......... .......... .......... .......... 212 CATGCATCCT ACCAATGTTG GATTTGGTTA CATATCCTTA CCTTACCTTA CCATACAACC 29603 .......... .......... .......... .......... .......... .......... 212 AATGAATTTG GAAAATTCAT CCTTCCCTTC CTGTTTCTTC TCTGTAAGCT GCATTACGAT 29543 .......... .......... .......... .......... .......... .......... 212 GTAATACCTC CCATGGGAAC CATCAATTTT GATGACACCA GCTTCTAGTA ACAATCACCT 29483 .......... .......... .......... .......... .......... .......... 212 TCATCCATAA TGTATCCATT TGAGTCACAC ACATCTAAAC TACTTTTCCT GAAGGATTTG 29423 .......... .......... .......... .......... .......... .......... 212 ATTAAATATT ACTCAGGTCA CCCAACTCTA GAGGGGCTAT CACCTTATCC TATTCTACGA 29363 .......... .......... .......... .......... .......... .......... 212 ATGATATCAT TTCTCCCCCT TTGTGTCATA TCATTAAAAA CTCATTAATT TTTCAGCTTT 29303 .......... .......... .......... .......... .......... .......... 212 TCTTTTCCAA GTGAGAGGGA TAGTGAATAA TGACATAAAA TAAGTTTACA GGTAAGTATC 29243 .......... .......... .......... .......... .......... .......... 212 AACTTGGTGA GGGTGATCTT TTCTCCTCTT GATAAATACT GCATCTTCCA CTTGTCCAAT 29183 .......... .......... .......... .......... .......... .......... 212 CTCTTTTCAA TCTTGTTGAA TTACTGGTCG CCGGAGTTCC AGTATCTTTT AACAATTCTC 29123 .......... .......... .......... .......... .......... .......... 212 CTCCTATATG GTCGTGTTGA TTCTTGATTC ATTATAAAAA ACATGATTTC TATGAAGCAT 29063 .......... .......... .......... .......... .......... .......... 212 GCTAAACCAG CTCCTATTAA CTATGTTGCT CCGACTCTTA AAAAATGTCA ATGGGTGGTT 29003 .......... .......... .......... .......... .......... .......... 212 GTCAGATTCT CCAAAAGTTG TGTATTTCTT GTAAAATTCG ACACGAGTGC GGCATCGAAA 28943 .......... .......... .......... .......... .......... .......... 212 GTGAAGTGTC CGTGAAACTT AGCCTATTAG TCAGTGGTGC CATTCCGGCT CTTTTACCTG 28883 .......... .......... .......... .......... .......... .......... 212 CTCCTTGCAA CTTTCTGTTC TTTTGCAGTG ATGGACATTA AGGATTGGGC AAACCGTACC 28823 .......... .......... .......... .......... .......... .......... 212 TCTGCTAAAG ATAGTGCTTA CATAATCAGA TATGACGCCC AGAAACATTG TTAGACTATC 28763 .......... .......... .......... .......... .......... .......... 212 ACAGCCCAAA TTGCTGAAAA AGATCTTTAA CCTATTTTGG CAAAATTCTC ATATTTATTT 28703 .......... .......... .......... .......... .......... .......... 212 GCCGATTTCA GTTTGTATTA TTGCCAAGGA GCACTCCTTT TACACAAGTC ACTACTTTCT 28643 .......... .......... .......... .......... .......... .......... 212 TTTTCTTTGT TATCCTATTC TTCCTAAGCT CTTATCTCTG TAAAGTCATT GCAAACACAA 28583 .......... .......... .......... .......... .......... .......... 212 TGACGTTGTG TGAGAAAGGA TCATTTTCCT GTAATTTGTT ATTTGACTGT GCTTTCTTAT 28523 .......... .......... .......... .......... .......... .......... 212 GGGAAGGCAA ATATAATGTG CCACTCTCAC AAGGCAGCAA TTTGCCTGTG TAAATAGCTC 28463 .......... .......... .......... .......... .......... .......... 212 CTTTGCTAAT TCATTTGTTG CCAATTTGAA GAGTAAAAAC ATGATTCAAT GTCTGAGAAT 28403 .......... .......... .......... .......... .......... .......... 212 CAAGATATTT TTGCTTGATT TGTACAATTA TCTGTTTGAT GGTTGACGTA TTTTTCACTT 28343 .......... .......... .......... .......... .......... .......... 212 CTACTGGCAA CTCAGGTGGT ATACATGGCT ATTGTTGGAT CATTTCCATT CAACTCTTTT 28283 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTGGT ATACATGGCT ATTGTTGGAT CATTTCCATT CAACTCTTTT 257 CTCTCTGGGG TGCTTTCTTG TATTGGCACA GCAGTCCTTG CTGGTGAGCT TGAGTGGTCT 28223 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTCTCTGGGG TGCTTTCTTG TATTGGCACA GCAGTCCTTG CTG....... .......... 300 ATTTAGATGC ACTCCATTTT TGAGAAAACG TTTATTTGAA ATGATTCATT AATATCTTTC 28163 .......... .......... .......... .......... .......... .......... 300 TTACAGTTTG TCTTCGGATC CAAGTAAACA AAGAAAACAA GGAATTCAAG GTAAGCTTTC 28103 |||| |||||||||| |||||||||| |||||||||| |||||||||| ......TTTG TCTTCGGATC CAAGTAAACA AAGAAAACAA GGAATTCAAG .......... 344 TTGGGATATG ATCTTCCATT TTACAGTTTT ACCTTGAATC TCCCCTCTAA TTTAGTTGTG 28043 .......... .......... .......... .......... .......... .......... 344 TTAAAATATG TTGCGACGTC ATAGATTATC AATGAATGTG TAGCATGTCA TGCACTTCTA 27983 .......... .......... .......... .......... .......... .......... 344 GTTATGCGGT CTCTTCCTAG AAGAAGAGAA ATGTAACTTG AGGCAGCTGG GCTTATGTTT 27923 .......... .......... .......... .......... .......... .......... 344 GTTTTTTCCT TTCAAATTAC TAGTGCTTAC AGAGTATGTC AATGAATCTC ATTTACGTTT 27863 .......... .......... .......... .......... .......... .......... 344 GGTCCACCAT TGCAGGATTT GCCTCCGGAA CGTGCTTTTG CAGATTTTGT TCTCTGCAAT 27803 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GATTT GCCTCCGGAA CGTGCTTTTG CAGATTTTGT TCTCTGCAAT 389 TTAGTGCTCC ATTTGGTGAT CATGAACTTT CTTGGCTAGA TTGAGGCACC AAATCTTGAA 27743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTGCTCC ATTTGGTGAT CATGAACTTT CTTGGCTAGA TTGAGGCACC AAATCTTGAA 449 AATGTTGCTC TTACAAATCT TGGTGATTTT TATGTAAGAA TAATATAGAG TCAATCGTAA 27683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTGCTC TTACAAATCT TGGTGATTTT TATGTAAGAA TAATATAGAG TCAATCGTAA 509 AGGATTTTGT TAGGCTTTCG GAAATATTAA GTTTCTCATG CATGAAACTA TTTTACATTT 27623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTTTGT TAGGCTTTCG GAAATATTAA GTTTCTCATG CATGAAACTA TTTTACATTT 569 ATGAATCTTA TATGAGTATT AGTAAGTAGA CAATCTTTGG CCATTCTGAG TTCTATAGCC 27563 |||||||||| |||||||||| |||||||||| |||||||||| || ||| | | | || ATGAATCTTA TATGAGTATT AGTAAGTAGA CAATCTTTGG CCCTTCAAAA AAAAAAAACC 629 CAAAAAGGAG CCAAACTTTT TC 27541 |||||||||| |||||||||| || CAAAAAGGAG CCAAACTTTT TC 651 hqPGS_C08HBa0320P23.1-_SGN-U318547+ (31342 31211,31086 31039,28327 28240,28156 28113,27847 27541) ******************************************************************************** EST sequence 26 +strand 932 n (File: SGN-U329548+) 1 GTTCAATGCT CACTTCTCAG CAGATGTTTT CACCAATATT CTTTTTCAGG ATGGTACTCT 61 TGAGGGCGTG GAGCGGGAGG TTGCCTCCTT ATTTCACCTT CCCCACAATT TTCAGCTAAT 121 AATTGATCAC GAGCTTCAAC ATGTGGTACA CCTTTTTATA TATAAATACA TACTTCATAT 181 ATTTAATATA CACACAAACA TCTTTATAAT AACATTTCAT TATAATAATA TTAAGTTCTC 241 TTTGAAATAT TTGGATTAAA AACAGTACTC CCTCCATCTG AAATTATTAG TCATGTTATG 301 CTTATCAAAA GTCAATTTAA CTAGTTTTCA AAGGTAAATT GGATCACTAT AATTCGATAT 361 TTTAAATAAA AATACTAGAT ATTCTAAAAC TATATGAAAA GTACTGTAAA TCATAATTTT 421 TTTTACATAT TAATATGATT AAAAAAATAC ATCTAATATT AATAATTTGA TTCTAAAAAT 481 AGAAATTATA ACGAACAATA ATGGAGGGAG TAATAATAAA GTTAATACAA GAATTTATCC 541 ATATACATGT AACTAAAATA AATAAACAAT CTCTATTAAA TACATGTTTT TTTTTTGTTT 601 TTGGAAAAAG TTTGTTCCGA AATTTTCGGC CAAGTAGTTT GACTAGAAAA GGAAAAAACC 661 GGAACTGTCA CAACTGCATA ACCTGAAATT CAGCCGGACA TCTTTTGGAC TTCTTTTATG 721 TGTACAATTC ATTTATATTG CTATCTAAGA GATAATTAAT TTTAAAATTA ATTATTTTAT 781 TTTTAAAACT ATAGAAATGA GTTATCTGGT CTTAAGATAA TAAACATGAT TAGCTTCCCA 841 TAAAATAATC GACATGTGAT ATTTCTCATC ATTCGTTATA TGTATGTTGT TTTTATTATA 901 AATAGATGTT TTTAAATAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 39326 to 29013): Exon 1 37282 37254 ( 29 n); cDNA 88 114 ( 27 n); score: 0.690 Intron 1 37253 37040 ( 214 n); Pd: 0.000 (s: 0), Pa: 0.147 (s: 0) Exon 2 37039 37014 ( 26 n); cDNA 115 138 ( 24 n); score: 0.692 Intron 2 37013 36633 ( 381 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 3 36632 36613 ( 20 n); cDNA 139 157 ( 19 n); score: 0.750 Intron 3 36612 35829 ( 784 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.65) Exon 4 35828 35780 ( 49 n); cDNA 158 205 ( 48 n); score: 0.653 Intron 4 35779 35380 ( 400 n); Pd: 0.000 (s: 0.65), Pa: 0.000 (s: 0.50) Exon 5 35379 35140 ( 240 n); cDNA 206 453 ( 248 n); score: 0.715 Intron 5 35139 34039 (1101 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.64) Exon 6 34038 33978 ( 61 n); cDNA 454 513 ( 60 n); score: 0.631 Intron 6 33977 33620 ( 358 n); Pd: 0.900 (s: 0.60), Pa: 0.000 (s: 0) Exon 7 33619 33596 ( 24 n); cDNA 514 537 ( 24 n); score: 0.792 Intron 7 33595 33208 ( 388 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 8 33207 33138 ( 70 n); cDNA 538 607 ( 70 n); score: 0.629 Intron 8 33137 29680 (3458 n); Pd: 0.000 (s: 0.60), Pa: 0.597 (s: 0) Exon 9 29679 29667 ( 13 n); cDNA 608 620 ( 13 n); score: 0.846 PPA cDNA 914 932 MATCH C08HBa0320P23.1- SGN-U329548+ 0.685 532 0.571 C PGS_C08HBa0320P23.1-_SGN-U329548+ (37282 37254,37039 37014,36632 36613,35828 35780,35379 35140,34038 33978,33619 33596,33207 33138,29679 29667) Alignment (genomic DNA sequence = upper lines): CTCTTTTCAA CCATCCTAGA CAAATTACAG CCCAAAAAGT ACTGGGAGCG GAGCTAGCTC 37223 || |||| | || ||| | ||| || || CTTATTTC-A CCTTCCC-CA CAATTTTCA. .......... .......... .......... 114 TCCGGTGAAC CGATCCAAAC CTTGAATTTA TATCAAAAAT CAACTAAATA TACCTAAATT 37163 .......... .......... .......... .......... .......... .......... 114 ATTAATTTAG AATCCAATAA CTTGGGATAT ACAAGGATTA ATCCCGAACC AAATTTATAC 37103 .......... .......... .......... .......... .......... .......... 114 TGCATTTCGT TGATGGTATA AGTTAATCCT ATCAACCAAA AATGATTATA AATTTTATTG 37043 .......... .......... .......... .......... .......... .......... 114 TAGGCTTAAT ACTTGATATC TAACTTGGAA TTATAATCTC AGGACTTTAA TCCCGAATAA 36983 || |||| | ||||| | | ||| | ...GC-TAAT AATTGATCAC GAGCTTC-A. .......... .......... .......... 138 ATCCACCTAT GGAATAGAAT TCAAAACTCA TAAACCTCAA ATCACAAATA AAAGAGCATT 36923 .......... .......... .......... .......... .......... .......... 138 AGAAGTTGAG CCAAATCAAG GAATACTGAC CGAGAGCGAG AGACTTGTGA ATGACTGTAA 36863 .......... .......... .......... .......... .......... .......... 138 CTGCGCAAAG TCGTAGGAAA GAGAGCTCTA CTACTAGTGC TGCTAAGAGA AGGAGCTGAT 36803 .......... .......... .......... .......... .......... .......... 138 GTAACTTTGC AAATGGCACC GATGTTTGAG AAAGTCGCCA TAGTTTTCTC TTCCACAGTT 36743 .......... .......... .......... .......... .......... .......... 138 CACAGAGATG AGATTGAGAA GTTATCTAAT CAATGGAAGA AAATGAATAG CAAAGGCAAT 36683 .......... .......... .......... .......... .......... .......... 138 AGTTGAACTT TGGCAAAATG CTTTCTGAAA TTTGGTTTCT GTTTTGCCAG ATTTGTGGTG 36623 | |||||| .......... .......... .......... .......... .......... ACATGTGGT- 147 AAGCCTTTTT GGGTGGGGCC ATACTGGGTG CACATTTTTC TTGAATATAG CTATTAGTTA 36563 | ||||||| ACACCTTTTT .......... .......... .......... .......... .......... 157 AGTTCGATTT TATGTATTAA CTAATTTACT TAATTAATTT TTAAATATAT TAAATTATTA 36503 .......... .......... .......... .......... .......... .......... 157 ATTAAATTAA TAAAAATATT TTTATTAAGT TTTGGTCTTT AATAATTTAG TTTTTGATTT 36443 .......... .......... .......... .......... .......... .......... 157 AAATCAATTC AAGATATTCA TAAAATAAAA ATATAATTTT TTTAATAATT TAACGCGATA 36383 .......... .......... .......... .......... .......... .......... 157 AAGGATAATG TAAATTTAAG GGCAATTTTA ACATATAGCA AAAATAAAAT TTAAAATTTG 36323 .......... .......... .......... .......... .......... .......... 157 TATGTTATAG TCATAGCAAA CATATATATA TATATAGAGA GAGAGAGTTC GCTATTCATA 36263 .......... .......... .......... .......... .......... .......... 157 TACAATTGAA AGTTATGCCT ATTTCAACTA TACATATATA CAAAGAAACA ATTGTATAAT 36203 .......... .......... .......... .......... .......... .......... 157 TCGTTGGTTA CTCTTCAGAT TGTATAATTT CACTGACAGA CCATTTGTAT AAGTTGTTGT 36143 .......... .......... .......... .......... .......... .......... 157 TAGCCTCTCA ATTCAACTGC ATGTGTTTGT ATATCTGTAT AAAATTTAAA TTTGTCTACA 36083 .......... .......... .......... .......... .......... .......... 157 ATTGAATCGA ATTATATAAA ACGAGAAAGA GAGAAATTTT ATACAATTCA AATTTGTAAT 36023 .......... .......... .......... .......... .......... .......... 157 AACGAGAAAG AGAGAAAGAC ATTTGGGCAT GGGAATATAC AATTGAATCG AATTGTATAA 35963 .......... .......... .......... .......... .......... .......... 157 AACGAGAAAG AAAAAAATTA TATACAATTT GAATTTGTAT CAAACGAGAA AGAGAGAAAT 35903 .......... .......... .......... .......... .......... .......... 157 GCAAAAGAGT CTTAGGCATG GAAAATTTGT ATTGTATAAT CATAAGTGTA TCGGATGGAG 35843 .......... .......... .......... .......... .......... .......... 157 ATATATGTAT ATGCATATGT ATATACAAAT TTCTCTCGCT TAATACAAAC GGAAACACAA 35783 |||| | | ||||| | ||| | ||||| | || ||||| .......... ....ATATAT AAATACATAC TTCATATATT TAATATACAC ACAAACATC- 202 TTTGTACAAT TTTATTGTAT AAAGTGAGAG AGGCGAGCGA CAAGGAGCTA GCGAGAGAAG 35723 ||| TTT....... .......... .......... .......... .......... .......... 205 GAGAGTGGCA AGCGAGAATA TGAGGGAGAG AGGGACTGAT AAATAGTTTG TTATGTAACA 35663 .......... .......... .......... .......... .......... .......... 205 CAAATAAATC AATCGGTAGC TACTGTATTT ATTTCACTAT TAGTTTGTCA TTTTATACAA 35603 .......... .......... .......... .......... .......... .......... 205 TTATCTCTAA ATTTGAATAC TCTTATAAAA TAGACATAGC ACTATTAACT AATAGAAAAA 35543 .......... .......... .......... .......... .......... .......... 205 AATTATATAA GTGCAATACA AATAAAAAAA CAAAATAATA ATGTGAATCG AAGGCTAAAT 35483 .......... .......... .......... .......... .......... .......... 205 AGTAAATGTG TAATGTACTG ATAATAAAAT TTAATATCTA TCTAGGGAAA ATGAGTAAAT 35423 .......... .......... .......... .......... .......... .......... 205 TACTACAATT TTATTAGGTT ATTTGATAAA ACCCAATATT AAAAAAATTA AAATTCAATA 35363 | ||| | | |||| || .......... .......... .......... .......... ...ATAATAA CATTTCATTA 222 -AAAAATTAT AAAATCATTA AAGAATA-AT GACTCAATAT CATATACTTC CTTCGTTCAG 35305 || ||| | || || | |||| | | | || | || |||| | || | | TAATAATATT AAGTTCTCTT TGAAATATTT GGATTAAAAA CA-GTACTCC CTCCATCTGA 281 AATTGTTTGT CATGTTGCGC TTATTAAAAG TCAATTTGAC TAATTTTTAA AGGTAAATTA 35245 |||| || || |||||| || |||| ||||| ||||||| || || |||| || ||||||||| AATTATTAGT CATGTTATGC TTATCAAAAG TCAATTTAAC TAGTTTTCAA AGGTAAATTG 341 GATAACATTA ATTCGATATT TTAAACAAAA A-A--A-AAA TTCTAAAACT ATATGAAAAG 35189 ||| || || |||||||||| ||||| |||| | | | | | |||||||||| |||||||||| GATCACTATA ATTCGATATT TTAAATAAAA ATACTAGATA TTCTAAAACT ATATGAAAAG 401 TACTATAAAT --TAATTTTT TTTACATATT AATATGA-TA AAAAAATACA TCTTAAAACA 35132 |||| ||||| |||||||| |||||||||| ||||||| || |||||||||| || TACTGTAAAT CATAATTTTT TTTACATATT AATATGATTA AAAAAATACA TC........ 453 TTAGTCAAAG TTTTTATAGT TTGAATCTAA AAATAGAAAC CATGACAAAT AATATCGGAC 35072 .......... .......... .......... .......... .......... .......... 453 GGAGGAAGTA CTTTTTATTT AATTTATTGA CCATTTTGAT TTCTACACAC CTCAAATAAA 35012 .......... .......... .......... .......... .......... .......... 453 TCAGTATGAA TTGTAAGGGG AAAATGACAT ATATATATAT ATATATACAC ACACACACAC 34952 .......... .......... .......... .......... .......... .......... 453 TATCGTAAAT GGTATGTAAA TATCCTTCGT CATATTTTTG GAACATTGAT GTCCCCATCG 34892 .......... .......... .......... .......... .......... .......... 453 CTCAAACTAA AACATATATA CCCTTTATAT TATTAGACAT ACATGTGTTA TAATTTTTTC 34832 .......... .......... .......... .......... .......... .......... 453 TACCGATCAG ACATTTATTA AATATCGAAT CAACATATAA GATTACGCTA AGTATTCCTA 34772 .......... .......... .......... .......... .......... .......... 453 TTTAGTCTTC TGTTACAATG GAGTATATAT ATGCTTTAGT TTTTGGACGA TAAAAATATC 34712 .......... .......... .......... .......... .......... .......... 453 AATACCCTAA TAATACAATA AAATATATCT TGATATCGTC TATAATTGTT CAAAAGTATA 34652 .......... .......... .......... .......... .......... .......... 453 TTTATTTATT TTTCCTAAAT TGTATTAACA CATATAGTAT TGATTGAAAC TTGAAAGCAA 34592 .......... .......... .......... .......... .......... .......... 453 CATATATGTA TTTGCTATAA AATTTAAAAT GTTGTTATAG TTTAATTTGT CACATCGCAA 34532 .......... .......... .......... .......... .......... .......... 453 AATTTTTAAG GCCCGAAAAA ATTGGTAAAA AGAAAAAGGG TAATTGCCTA ATTTCTTTTA 34472 .......... .......... .......... .......... .......... .......... 453 GTGGAAATAA TAAAACGAGG AAACAGAAAA AAATAAAAAA TTATCATTTA TTGGGGATGA 34412 .......... .......... .......... .......... .......... .......... 453 AAAAAAAAGA GATTCTTTTT GGTAAGTAAG AAAAAATCTC GTGGCATTTG GCATAACATG 34352 .......... .......... .......... .......... .......... .......... 453 TCATCAATTT AAGTTTGTAG ACTCTTGAAA GTTCTTTTTT TTTTTAATAA TAGGAAAATT 34292 .......... .......... .......... .......... .......... .......... 453 ATTTATGGCT ATTTTTCTTC AAAATTTTAA CTTTTGAGGA TATAATTTGT CTTGTCATTT 34232 .......... .......... .......... .......... .......... .......... 453 GAACTGGTGT GTGCATTCAA TTTTTCGCTT CGTTCTTATA TTATTTGGTT TAGATTTTTT 34172 .......... .......... .......... .......... .......... .......... 453 ATTTTTGATT TTGAAGAAGT GTAAGTTAAT TCAAATCAAA ATAAATTTGA TTTGATTTGA 34112 .......... .......... .......... .......... .......... .......... 453 ATTTTCTCTT TTGGGTTTGA TTTTTTTTCG ATTTGGTTAA TCGATTACGT CAATAGTTAT 34052 .......... .......... .......... .......... .......... .......... 453 AAATATAACA AAGTTATATT TGTAATTT-T TTAAAAAAAT ATATAAATAT ATGTAGAGAA 33993 | ||||| |||||| || |||||| | | || ||| | | | || .......... ...TAATATT AATAATTTGA TTCTAAAAAT AGA-AATTAT AACGA-ACAA 498 TATTGAATTT CGTAAATATA CTTTTTAATA TAAATGACAA GTAAAACACC AAACTCAATA 33933 || || | |||| TAATGGAGGG AGTAA..... .......... .......... .......... .......... 513 CTTAAAAGTA TAACAATTGT AGATGTCCAA ACATAAGAAA AATAAACTAA TTCATAATGA 33873 .......... .......... .......... .......... .......... .......... 513 AAATAACAAA AAAGAAATAA AAGTGGTTAA CTCCAATTTA ATTCTAAACA CACACACATA 33813 .......... .......... .......... .......... .......... .......... 513 TATATAATTC ATTTTTTTTA ATTTCTAGAT TTTCATTTTT TCTAAATTCG AAACCAAACA 33753 .......... .......... .......... .......... .......... .......... 513 AAATAAATTA TAGATTCAAA ATAAAACCAA GAATCCAAAA AAAAAAAAAA CAATCCAAAT 33693 .......... .......... .......... .......... .......... .......... 513 TAGAATTCAA TTTGATTTAG TTTGGTTTTT CAATTTAATC CAAATAGTGC ACACCTATAT 33633 .......... .......... .......... .......... .......... .......... 513 TAAAGAATAG AGGCAATATA GTTATTTCAA CAATTTATAA GAAAAATATA ATTTTACTCA 33573 |||| | |||| | ||| |||||| .......... ...TAATAAA GTTAATACAA GAATTTA... .......... .......... 537 TAAAACGCTA CTGAACGTGA TTTATGTATA AAGAGTAGTG GAAATATAGT AATTTCAACA 33513 .......... .......... .......... .......... .......... .......... 537 ATTATAGCTA AAACATAATT TTACTCACAA AACGCTATCA CTGAACTTGA TTTATTTATA 33453 .......... .......... .......... .......... .......... .......... 537 AGAGTAGGGC AATATCAAAA TTTCAACAAT TTATAAGAAA AACATAACTT TACTTATAAA 33393 .......... .......... .......... .......... .......... .......... 537 GAAAATTAAG TAACCGATTA GCATGTTTAA AATCATAACC TAGTAACGAG CAAATAATTA 33333 .......... .......... .......... .......... .......... .......... 537 TGATATTTAT TAATTTGTCC AAAACATATT TGTGATTTAT TATATTATAT AGAGAAAACG 33273 .......... .......... .......... .......... .......... .......... 537 TGTGTGGTAA GTTTAAATTC ATTTGCTTCA AAATATACAG TATATAAATT GTTTTATACT 33213 .......... .......... .......... .......... .......... .......... 537 AACCTTCCAA AAAAATCTAT TTAAAACAAA ATGAAATTAT GTACTAATTT CTACTTTTAT 33153 |||| | | || || ||||| ||| | | | | || ||| | | |||| | .....TCCAT ATACATGTAA CTAAAATAAA TAAACAATCT CTATTAAATA CATGTTTTTT 592 TTTTCTTTTT TCATCCTTTA TAATGTTGAT GGGTGGTGTT TTTGTCCCGT TCACCAATCA 33093 |||| ||||| | TTTTGTTTTT GGAAA..... .......... .......... .......... .......... 607 AAAAGATAGA TTTTGCTTGC CAAAAATCAT TTCAACTTTC ACCATAATAT ATATATATAT 33033 .......... .......... .......... .......... .......... .......... 607 ATATATATAT ATATATATTA TGGTGAAAGT TGAAATGATA TATATAGGAA ATCAACAATT 32973 .......... .......... .......... .......... .......... .......... 607 AATTATAGTT AATATTATTT TTCAAATTAA ATTATGAAAT TGTCTTTTCA AGCTCAAATT 32913 .......... .......... .......... .......... .......... .......... 607 CACATGAACC CTAAACTGAA TTTGAGGTGA TACAAAATAT AAAGGATTGT TATAACAAAG 32853 .......... .......... .......... .......... .......... .......... 607 AGATGTATAA ATGTGTAATC TCACAAAACT CTTAATAGTA TGCAGTATTA CTTATAAAAT 32793 .......... .......... .......... .......... .......... .......... 607 ACAAGATAGT GAGTTAATTC CATATTCTTG ACTAGTAGAT GAATAGATGC AATGGATTAA 32733 .......... .......... .......... .......... .......... .......... 607 AAAACTCATA GAAATTTGGA TCAAGATCTC AATTAACAAA AACAAGTTTT TAGATGATAA 32673 .......... .......... .......... .......... .......... .......... 607 AATTATTTGA TGTTTATATT GATTAAAAAA TAAGCATATA CTTAGATTGT GGATTATAGC 32613 .......... .......... .......... .......... .......... .......... 607 TAAATTATTG TAATCTAATG CCCATAGAAA TTGAAACAAA CCTCTCCACT TACATGTTAC 32553 .......... .......... .......... .......... .......... .......... 607 AATACTTAGA ACATCCACAC CCAAACTTAT AATTCTATTC TTACATCTTG CATATTAATT 32493 .......... .......... .......... .......... .......... .......... 607 TTGAAGAAGT GAGATAATTC AGTAATTCGT TATAGCTTTT GCGAAGCCAA TAAAATAGCA 32433 .......... .......... .......... .......... .......... .......... 607 AACGTTTTGT TCAACTTAGG TTTCAAGCTA ACAATAATCA ATCCACCACT CTTTTTGCTA 32373 .......... .......... .......... .......... .......... .......... 607 ACTCCCTTGA AGGAATCACA AGTCAAAAAA GATCAAGATG AAGCTCTATT CATTAAACTA 32313 .......... .......... .......... .......... .......... .......... 607 ATATATTATG ATCTATAAAT AATAAATTAG CTCATTTGAC AATCTATCTA TAATCTCTAA 32253 .......... .......... .......... .......... .......... .......... 607 AAATGTTGTT ACTGTGCAAT TATAATAGCT AATTTGCTTA CAATAAAATT ATTTTAGAAG 32193 .......... .......... .......... .......... .......... .......... 607 TACATAATAT AAAACATAAG TACTTGTTAT CTTTGACGGT TACAAAATTA AATAATAAGT 32133 .......... .......... .......... .......... .......... .......... 607 TTTTTTATAT TTTTAAAAAA AATTAAATAA GTATATAAGA GCAAATTATT AATTCAAATT 32073 .......... .......... .......... .......... .......... .......... 607 AAATACTATA ATTCTAGTTT GATTTAATTG TACCCCTTAG TAAACTATTG TTATTTCGCT 32013 .......... .......... .......... .......... .......... .......... 607 TCTCTCCTAG TGAATCTCGC TTGCCACTCT CATTCTCTTC CTCGCCTCTC TCACTTTTAT 31953 .......... .......... .......... .......... .......... .......... 607 ACAAATGCAA TGTATGAAAT ATGTTTGTGT TTGTATAAAG CAAGAGAAAA TTGTAGATAT 31893 .......... .......... .......... .......... .......... .......... 607 ATATATGTGT TCGTTCCCCT CTATCTTCTT TCCAGATCTC ACTCGCCACT CTTCCAGAAA 31833 .......... .......... .......... .......... .......... .......... 607 TTGCTCGCTC GCCTCGTATA AAATGCGTTT GTGTTTATAT AAAACAAGAG AAAATATTAT 31773 .......... .......... .......... .......... .......... .......... 607 ATATACACAT ACTTGTTCCC CTTTCTCAAA TCTCACACGC CCATCTCCCA GATCTTGCTC 31713 .......... .......... .......... .......... .......... .......... 607 ACTCGCGCCA CTTCCTAGAT CTTGCTCACT CACTTGCCTC TCTTACTTTA TACAAACAGA 31653 .......... .......... .......... .......... .......... .......... 607 AATGTATAAT TATGTTTGTG TTCGTAATAA AATGAGAGAA AATTTTATAT TTAAATACTA 31593 .......... .......... .......... .......... .......... .......... 607 TGTATATATT TTCGTCCTAT ACACTTATGA TTATATAAAT ACGAGAGAAA ATTATATATA 31533 .......... .......... .......... .......... .......... .......... 607 TAAATGCTAA TTATGAAGAC CAATTATACA AACTATTACT ATAACTACGA GTATGATTTT 31473 .......... .......... .......... .......... .......... .......... 607 TATGTTTGCT ACCTTTTGAG TATTTTAAAA ATTATTTTAA CACCTAAAAG GCAAATAGAG 31413 .......... .......... .......... .......... .......... .......... 607 ACCGAGGGCA ATTTTGGTCA TTTTCATTTT TACTTTTAAC GCCTTCGGGG TTTAGACCGT 31353 .......... .......... .......... .......... .......... .......... 607 CCATTCTCAC TCCATCGAAA TTGAGGTCAC ACAAGAGAAC TGAAGAGTGA CAAAAATGGC 31293 .......... .......... .......... .......... .......... .......... 607 AAAGTCGTCG GCGACCAAAG ACGCCCAAGC TCTTTTCCAT TCTCTCCGTT CTGCTTATGC 31233 .......... .......... .......... .......... .......... .......... 607 CGCAACTCCG ACGAATCTCA AGGTAACTGA CTCTCTCCTC GATTCCCGTG CAGCAATTTA 31173 .......... .......... .......... .......... .......... .......... 607 CTTTCATACA ACTTTCAAAT CTATACAGTT TCAGTCAATA TTCACGTATT TCTATTGGGT 31113 .......... .......... .......... .......... .......... .......... 607 TCTAATTGAA TTGTTTTTCA TCGCAGATCA TTGATCTATA TGTCATCTTT GCGATCTCTA 31053 .......... .......... .......... .......... .......... .......... 607 CTGCCTTAAT TCAGGTATTT ACTTAACAAC TTTGCTGTCA TTGATCCATT TTCTGTATGT 30993 .......... .......... .......... .......... .......... .......... 607 ATGTATCTTA TGGGGTCAAT CTTATTGCTA TAGATCTGTA ATTATTATGT TCTTACTGTG 30933 .......... .......... .......... .......... .......... .......... 607 GTTGTATTGG TAAAATTTTG GATGATCCAT GTTCTCATAA GCTGTTAACT TTCTAATGTC 30873 .......... .......... .......... .......... .......... .......... 607 CTTCGAAATT TTTATTGAAA ATGTATGTTA TGGGGTTTGA ATACTGATGG CTTAATGATG 30813 .......... .......... .......... .......... .......... .......... 607 TCAGTTTAAG CATTACCTAG ATTGATTTGA TCTTGGTCTA ATGCTTGTTT CAATTGAGCA 30753 .......... .......... .......... .......... .......... .......... 607 TCTGATGCAT TAGAGATATG CTTTTGATGC TAATGGCGAA GTGGCTGAGG CATAATTTTT 30693 .......... .......... .......... .......... .......... .......... 607 TTGGGAAGAA TGTATTATAA GTAGAAAGTG GAGTTTGGGG CGGAGTATGT TTTATGCTTT 30633 .......... .......... .......... .......... .......... .......... 607 GAGGGGTATT ATCTTTTATT CTGTAAAGAA GATTCAAATT CAATCCTTCA ATTGTTCAAA 30573 .......... .......... .......... .......... .......... .......... 607 CAACACCAAT AAGGTTAGAT AGTATTTATT ATGAGAATCT GTCATTTTGG TTTGTTGTGA 30513 .......... .......... .......... .......... .......... .......... 607 ATAATTAGCC TAATCAGAGC TAATATGGGA GGTCTAGAAG GTCACTGTTC CCTCTGTACA 30453 .......... .......... .......... .......... .......... .......... 607 TCCAATGAAG AGTCATTTGG TTTGAGTCAG TTCCGTCATG AATTTTGACG TTACAGTCTG 30393 .......... .......... .......... .......... .......... .......... 607 CCAACGTGAT AGTCACCTTT CATGAATTTT CATAGTAGTT ACTATCCAAT TCCTCTAATC 30333 .......... .......... .......... .......... .......... .......... 607 CTTTTTTTAT AAATCAAAAT GATTTCATTA ATAACACCAA GAGGGTATCA CCATCCAACC 30273 .......... .......... .......... .......... .......... .......... 607 ATCTCTTCTA TATAAAGTAT CCCCTTTTCA GTAAATAAAA TGGAAATAAA GGTCTCTTGT 30213 .......... .......... .......... .......... .......... .......... 607 CACCTCATAG TAGACTCTCT AATCCTCCAA AAAGTTCTTC TGTTCCCTTA TCTCCACATC 30153 .......... .......... .......... .......... .......... .......... 607 AACCAAAGAC ATAAAGGGGA AGCCACTCTA CATGTCCTTC CAGCATCTAT TTCAGGTCTC 30093 .......... .......... .......... .......... .......... .......... 607 CACCTCTCCA ATGTTCCTGT CAGACTCACA GAATTAGGCT GATATTTGAC ATGGGATGTA 30033 .......... .......... .......... .......... .......... .......... 607 CCGACAATAG TTCCATTGTG AACTAATTAT AACCATCTCC TTGTCAAGCA TCTGCTGTTA 29973 .......... .......... .......... .......... .......... .......... 607 AAGGTGATTT TCAACTCTGC ATACCATGTG AAGAAAGTTA GTTTCTTTGG TACCTTTTTC 29913 .......... .......... .......... .......... .......... .......... 607 TCCCATACTG ATCTCTATTT TTTTAAAAAA TCAGCAACTG CGAAAGACAA TCATAATACG 29853 .......... .......... .......... .......... .......... .......... 607 ATTCTAAGGC GGTGATCTTT TCCACATCAC TCTATCTTCT TCCCAAAGCA GTCATGTTTA 29793 .......... .......... .......... .......... .......... .......... 607 CATCATCCGT TTTCCACTCT TGTATGTATC TCTAAAATAA AATTTGACAA TACTTGGCTC 29733 .......... .......... .......... .......... .......... .......... 607 CCTTCTCTTC TGAGGAGTTT GTCTGCTGTT GCTTCTTTGT CACTATCCTT TAGAAGTTGG 29673 ||||| | .......... .......... .......... .......... .......... ...AAGTTTG 614 ATCCGA 29667 ||||| TTCCGA 620 hqPGS_C08HBa0320P23.1-_SGN-U329548+ (35379 35140,34038 33978,33619 33596) ******************************************************************************** EST sequence 8 +strand 1328 n (File: SGN-U316185+) 1 CGGGCTGCAG GCAAAGTTCA ACTATTGCCT TTGCTATTCA TTTTCTTCCA TTGATTAGAT 61 AACTTCTCAA TCTCATCTCT GTGAACTGTG GAAGAGAAAA CTATGGCGAC TTTCTCAAAC 121 ATCGGTGCCA TTTGCAAAGT TACATCAGCT CCTTCTCTTA GCAGCACTAG TAGTAGAGCT 181 CTCTTTCCTA CGACTTTGCG CAGTTACAGT CATTCACAAG TCTCTCGCTC TCGTTCTTGC 241 CGACTTTGTA TTAAAAGCAG TTATGCCGAA GCTGTCAGAG GGGATCCTAA CTCGGATGCA 301 ATTGATGTTG TAGCAGATGT TAAGACTGAA CGAATTGTAG TTATAGGAGG CAGCGGCTTT 361 GTTGGCTCTG CAATATGCAA GGCCGCAGTG TCAGAGGGTA TAGAGGTCAT AAGTCTGAGC 421 AGATCAGGGC GTCCCTCTAA ATCAGACTCA TGGGTAGATC AAGTCACTTG GATAACAGGA 481 GATGTTTTCT ATGCAAACTG GGATGAAGTA CTTATTGGGG CTACAGCAGT TGTTTCAACT 541 TTAGGAGGTT TTGGTTCTGA TGAACAAATG CTTAGGATCA ATGGTGAAGC TAATGTTGTG 601 GCTGTCAATG CTGCTAAAGA ATATGGGACC CCTAAGTTCA TATTGATTTC TGTGCATGAT 661 TACAATCTAC CATCATTCCT CCAATCAAGT TACTTCATAG GGAAAAGAAA AGCAGAATCA 721 GAAGTTCTTT CCAAATTCCC TAGCTCAGGT GTGGTTCTTA GACCTGCCTT TATATATGGG 781 AAGAGGAAGG TTGACGGCTT CGAGATCCCT CTAGATTTGA TTGGAGAACC TCTTGAAAAG 841 TTATTACGTG CAACAGAGAG CTTCACTAAA CCATTGAACT CGTTGCCAGC ATCCGATTTA 901 ATTCTTGCCC CTCCTGTTAG CGTGGACGAC GTTGCTTATG CAGTGATAAA TGCTGTTAAG 961 GATGACGACT GTTTTGGCAT TTTTACCATC AACCAAATCA AAGAAGCAGC AGCAGGGGTT 1021 AAGGTGTAAG ATAAGGTCCA CATCAAAAAG AAAAATGACA TACATCTTGT AACAAAATTA 1081 TATATGTAGA ACATGTATCA TGTCATACAA AACTCTTGCT TATGATATCC ATAGTATAAT 1141 GGACCTTTTG ATGCTAAAAA AAAAAAAAAA AATCCTGTAT TTACTAGTAA GAAGAGCAAA 1201 TCAATACTCC ATCTTGCAAA ACACCATGTG TTGGAAGTCT TGGAGATTGA AATTATAGCA 1261 GTGAATTGAA CCGCGCTTCG CGCGGACATA ATTATTGTTA AAGTAGTTCT TTTAGAAGAC 1321 TTAAGTAA Predicted gene structure (within gDNA segment 35961 to 42207): Exon 1 36671 36892 ( 222 n); cDNA 12 233 ( 222 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 2 38347 38446 ( 100 n); cDNA 234 333 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 38563 38651 ( 89 n); cDNA 334 422 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 4 38835 38890 ( 56 n); cDNA 423 478 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 39811 39957 ( 147 n); cDNA 479 625 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 40682 40804 ( 123 n); cDNA 626 748 ( 123 n); score: 1.000 Intron 6 40805 41017 ( 213 n); Pd: 0.973 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 7 41018 41597 ( 580 n); cDNA 749 1328 ( 580 n); score: 0.983 MATCH C08HBa0320P23.1+ SGN-U316185+ 0.992 1317 0.992 C PGS_C08HBa0320P23.1+_SGN-U316185+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40804,41018 41597) Alignment (genomic DNA sequence = upper lines): CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 36730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGTTCAA CTATTGCCTT TGCTATTCAT TTTCTTCCAT TGATTAGATA ACTTCTCAAT 71 CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 36790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCTCTG TGAACTGTGG AAGAGAAAAC TATGGCGACT TTCTCAAACA TCGGTGCCAT 131 TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 36850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAAAGTT ACATCAGCTC CTTCTCTTAG CAGCACTAGT AGTAGAGCTC TCTTTCCTAC 191 GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CGGTCAGTAT TCCTTGATTT 36910 |||||||||| |||||||||| |||||||||| |||||||||| || GACTTTGCGC AGTTACAGTC ATTCACAAGT CTCTCGCTCT CG........ .......... 233 GGCTCAACTT CTAATGCTCT TTTATTTGTG ATTTGAGGTT TATGAGTTTT GAATTCTATT 36970 .......... .......... .......... .......... .......... .......... 233 CCATAGGTGG ATTTATTCGG GATTAAAGTC CTGAGATTAT AATTCCAAGT TAGATATCAA 37030 .......... .......... .......... .......... .......... .......... 233 GTATTAAGCC TACAATAAAA TTTATAATCA TTTTTGGTTG ATAGGATTAA CTTATACCAT 37090 .......... .......... .......... .......... .......... .......... 233 CAACGAAATG CAGTATAAAT TTGGTTCGGG ATTAATCCTT GTATATCCCA AGTTATTGGA 37150 .......... .......... .......... .......... .......... .......... 233 TTCTAAATTA ATAATTTAGG TATATTTAGT TGATTTTTGA TATAAATTCA AGGTTTGGAT 37210 .......... .......... .......... .......... .......... .......... 233 CGGTTCACCG GAGAGCTAGC TCCGCTCCCA GTACTTTTTG GGCTGTAATT TGTCTAGGAT 37270 .......... .......... .......... .......... .......... .......... 233 GGTTGAAAAG AGCTTGCTGA TTGAATAAGA ATATGACAAA CAAAAAATCA CACTGCCTCA 37330 .......... .......... .......... .......... .......... .......... 233 GGGAAAGAGA AAGGAAATAC TATTCAAAAC CTAACCTAAT GGTTGTAATT TAGTTTCTTT 37390 .......... .......... .......... .......... .......... .......... 233 AAGAGTTGTA GAGGCAGGCT TCTCATTTCT CAAATGTTAC ACCATTTATC TTGATGAAAA 37450 .......... .......... .......... .......... .......... .......... 233 CATTTATCGT TTGATCAGTT ATTGTTACAC ACTCGAGAAA TTAAGATCTC TTGGTCACTT 37510 .......... .......... .......... .......... .......... .......... 233 ACAAAATGAA TAGAAGAAAA TGGTCTTTCT AGTTACTACA TGAAGAGTTA CTATAAGTCA 37570 .......... .......... .......... .......... .......... .......... 233 ACATAGCTAA CAGTTCTAAA AAAAAATTAA GAAGTTTGAG AAGATTATAG TCAAAGGGAA 37630 .......... .......... .......... .......... .......... .......... 233 AATTGTTTAA TTCCCCAAAT AGTAACACCT TAATATAAAG TGGGGCGGAG GGAATATAAA 37690 .......... .......... .......... .......... .......... .......... 233 TGATCCACAT AAAATGTACA TGACCATGCT GTTCCAGATC AATCAATCAA TGAACCAAAC 37750 .......... .......... .......... .......... .......... .......... 233 TACCCCTCAG TCTCAAATTA GTTGGGGATA GTCATTTCGC TCTTTTAAGG TCCATTTACC 37810 .......... .......... .......... .......... .......... .......... 233 TCTAAGAGTA TTCATTATAT GGTTATTTGG AGTACTACTT TTTGGCTGTC TGTCTACATA 37870 .......... .......... .......... .......... .......... .......... 233 CAATGACCTT TTTCCTTTAT CTGATCATGA AGTTTTGTAA AACTCACGCA TGTGGAGTTG 37930 .......... .......... .......... .......... .......... .......... 233 GTTTTCAAAA TCCTAACAAA GGTAAGGAAT GCAGATTAAA AAATTAGAAT TTCAGCTTTA 37990 .......... .......... .......... .......... .......... .......... 233 AAAATAATGT ACAAAGAAAA CTAAGAATTA TATCGTCAGT GTATATAGAA ATAAAAGAGT 38050 .......... .......... .......... .......... .......... .......... 233 GATCATTCAG ATTGTCAGTT CTGTACCTTA GCAATTGTTG TCACATCATG TTCCAGGATG 38110 .......... .......... .......... .......... .......... .......... 233 ATCTTTTTGA TTTTTTAGTT CCATGTCAGG CATAGTTGAA TTTTCTTTCT TTCCTTTTTC 38170 .......... .......... .......... .......... .......... .......... 233 CACAGCAGAA GCGAGATATG TAGATCTGCA CAGAAAACTA TATCCTTTGA AAGACTAAAC 38230 .......... .......... .......... .......... .......... .......... 233 TAGTTTTCTG AGAACTGGAT TAAGGTTCCA AGTAAAACTG TATGCGCTGT ATTCGCAATC 38290 .......... .......... .......... .......... .......... .......... 233 TTTGGGATGA TCAGAATTCT AGCCTGACAT GTTTGCAATG TTTCTCTTCT TTTTAGTTCT 38350 |||| .......... .......... .......... .......... .......... ......TTCT 237 TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 38410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGACTTT GTATTAAAAG CAGTTATGCC GAAGCTGTCA GAGGGGATCC TAACTCGGAT 297 GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGAGTAT TACTTCATGA CTTAAGCATC 38470 |||||||||| |||||||||| |||||||||| |||||| GCAATTGATG TTGTAGCAGA TGTTAAGACT GAACGA.... .......... .......... 333 TTCTCTTTCT CCTTTTGAGA TCAAATCCAT TTACAACTGT CTCAATAGCA ACTACTTGTC 38530 .......... .......... .......... .......... .......... .......... 333 ATTCACTTTT TTTTTCTTTT TTCTTTTAAC AGATTGTAGT TATAGGAGGC AGCGGCTTTG 38590 |||||||| |||||||||| |||||||||| .......... .......... .......... ..ATTGTAGT TATAGGAGGC AGCGGCTTTG 361 TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 38650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTCTGC AATATGCAAG GCCGCAGTGT CAGAGGGTAT AGAGGTCATA AGTCTGAGCA 421 GGTATTTTTA ATACATGACT GAGCAGTTCA ATAGGGATTT CAATGAATAA AAGAATCTTT 38710 | G......... .......... .......... .......... .......... .......... 422 ATAGATTGAA TGTGATGGAT CTTAAACATT TTCTGTTGAT TCAGAAGGAT CTATACAATT 38770 .......... .......... .......... .......... .......... .......... 422 GCTCTATCCT CTTATGCTAC TTTTTCGTAT TATGGGTTCT CAAATTTTAG TATTTCCTAC 38830 .......... .......... .......... .......... .......... .......... 422 TCAGATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 38890 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATCAGG GCGTCCCTCT AAATCAGACT CATGGGTAGA TCAAGTCACT TGGATAACAG 478 GCAGGTTCAT TTCTTCATCA TGCACTTGAG TAGGTTGACA ATGAATTCAA TTAAAAGATT 38950 .......... .......... .......... .......... .......... .......... 478 TACATGGATG AAATCAATGT AGAAGTTGGT TTCCAGGCCC TCTTTCTGAT GAAAGCCATC 39010 .......... .......... .......... .......... .......... .......... 478 GTAGTTCATT GAGAATGGAT AATAATGTTA TTGATGAATG AATCCCCCAT ATATTTTTTG 39070 .......... .......... .......... .......... .......... .......... 478 GTTGGTGTGT GCAGTGGTGG ATCTAGGATT TTGAGGTTAT TGTGTGCTCT GAAAGTTGTG 39130 .......... .......... .......... .......... .......... .......... 478 GAGTCAAAAA TATAAAATGG ATAATAATGT TATTGATGAA TGAATCCCAC ATATATTTTT 39190 .......... .......... .......... .......... .......... .......... 478 TGGTTGGTGT GTCATGTGTG TGTGGGGTAA ATGTGTTTGC TGAAGATACT TGAAGACTCT 39250 .......... .......... .......... .......... .......... .......... 478 CTCGCCACAC TAAATAACGG AAAGATTAAT CTACTGAAGT TCCTCATAGT CAAGCAAAGT 39310 .......... .......... .......... .......... .......... .......... 478 AACTCTGTCA CTAGAAAAAA AAGGTTCAGT TTACCCTTAA AGATGAATGG GGGGGGGGGG 39370 .......... .......... .......... .......... .......... .......... 478 CAGACTCTAT TTTGCAACCA TTTGAAAGAC CAAATATAAT TCTCTATTAT TCATTCTATG 39430 .......... .......... .......... .......... .......... .......... 478 ATTGAAGCCT AGAAGTCAAA ACATGTTGTC AAAAACTGGA TATTCAATCT TTGCCATAGT 39490 .......... .......... .......... .......... .......... .......... 478 CCATAGGTGA AGATTTACAA AAGGAGCAAG TTCTAAAGTT CCTTCAAACA ATATGAATCC 39550 .......... .......... .......... .......... .......... .......... 478 CGGACCAAAC AGGAGCGAAG AAGTGTAAAG AGTCTTTAAA CTACTGGACT GTTTTGCCTA 39610 .......... .......... .......... .......... .......... .......... 478 GTGTGGTTTT TATGGTCAAT TGGTCATATG CGAACTTGAA AGAGGATTCC AATTAAAACT 39670 .......... .......... .......... .......... .......... .......... 478 ACCTCTATCA GAAAAAAAGA AGATCCCATT AAAAGTAACA GATGTTATCT GTGTTGGTGT 39730 .......... .......... .......... .......... .......... .......... 478 AGTTTTGACT TTTGGTTTAA GTCCTTTTCT GATATTTTCC ACCCAATTCA GATTATTCAT 39790 .......... .......... .......... .......... .......... .......... 478 ATGATCATCT TATCATGCAG GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 39850 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GAGATGTTTT CTATGCAAAC TGGGATGAAG TACTTATTGG 518 GGCTACAGCA GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT 39910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTACAGCA GTTGTTTCAA CTTTAGGAGG TTTTGGTTCT GATGAACAAA TGCTTAGGAT 578 CAATGGTGAA GCTAATGTTG TGGCTGTCAA TGCTGCTAAA GAATATGGTC AGTAGCTTTC 39970 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATGGTGAA GCTAATGTTG TGGCTGTCAA TGCTGCTAAA GAATATG... .......... 625 ATTTTATTTA TTTGAAGAAA TCTGTAAAGC TGAAGTGACC TTTAGTGATA AACTTTTGAG 40030 .......... .......... .......... .......... .......... .......... 625 TGGTTAGTTT TTGCAGTGCC TATCTTCTCT ATCTTATTTT TACTTTAACT TGCAATATAT 40090 .......... .......... .......... .......... .......... .......... 625 AATGAATCAG ATAAGTCATG CTTCCCTGTG ATGAAGCATG AGGCATGGTT GACTCCATTA 40150 .......... .......... .......... .......... .......... .......... 625 TTTACTTTAG CTCAGAGCTA AAGATTTTAA TGAGCAGAAA ATTCTGCTCG TCACTTCTAA 40210 .......... .......... .......... .......... .......... .......... 625 TTTAATGACA TTTACCAACT GAAGCAAAAG CTGAATCCGT CCCCAGATTG AAATAAAATG 40270 .......... .......... .......... .......... .......... .......... 625 CTTGAGTAAG TATAAATTGT AGGATATGCA TGAAGTAACT GCTATTATAG ATATTTTGCA 40330 .......... .......... .......... .......... .......... .......... 625 TTTCTCTTGC ACTGGCTGGG TGCTGGTCTG TTTATTAATA GAACTTAGCT TACTTATCAA 40390 .......... .......... .......... .......... .......... .......... 625 ACAACTATTA CTACCCCTTA ATGTTAAACT AGTTGGGATT CGTTATATAG AACTTCATGA 40450 .......... .......... .......... .......... .......... .......... 625 TCTATTTTTC TTCACCTAGA CCTGTTATCC AGTATTCAAT AATTTGGGAT TGTCTAAAAC 40510 .......... .......... .......... .......... .......... .......... 625 AGAGGTTCTC TACAATTTGC AATTAACAGT ATGGTACTGC TTTGCTGTGT TTAAGAACAA 40570 .......... .......... .......... .......... .......... .......... 625 CCCTTATGGC AGGTTTAAAC TAGTCATTTT GCACACCATG TTATCATTGT TCCCTTGTTT 40630 .......... .......... .......... .......... .......... .......... 625 CTCCATAACT ACTCATGCCA AGTGTTACAT TATATTTTTT GTTATTTGCA GGGACCCCTA 40690 ||||||||| .......... .......... .......... .......... .......... .GGACCCCTA 634 AGTTCATATT GATTTCTGTG CATGATTACA ATCTACCATC ATTCCTCCAA TCAAGTTACT 40750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCATATT GATTTCTGTG CATGATTACA ATCTACCATC ATTCCTCCAA TCAAGTTACT 694 TCATAGGGAA AAGAAAAGCA GAATCAGAAG TTCTTTCCAA ATTCCCTAGC TCAGGTACTC 40810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TCATAGGGAA AAGAAAAGCA GAATCAGAAG TTCTTTCCAA ATTCCCTAGC TCAG...... 748 TATTAGATGT TTACTTCCCA TTGATGTGAC CGTGGCAGTC TGAAGCTTAC GGTTGTCTCT 40870 .......... .......... .......... .......... .......... .......... 748 TTGAAATTAT TATGTACAAC AGCACCATGT CTGCAACAAG TTTGTAAATG AAAAGGGAAA 40930 .......... .......... .......... .......... .......... .......... 748 GTGTTCTGCT TGTTGCTTAC CCTGAACTAG TCCAGCCACA ATTTTTTTGT TACTTACATA 40990 .......... .......... .......... .......... .......... .......... 748 CTTGAATTTC TCACTGAAAT GTAACAGGTG TGGTTCTTAG ACCTGCCTTT ATATATGGGA 41050 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTG TGGTTCTTAG ACCTGCCTTT ATATATGGGA 781 AGAGGAAGGT TGACGGCTTC GAGATCCCTC TAGATTTGAT TGGAGAACCT CTTGAAAAGT 41110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAGGT TGACGGCTTC GAGATCCCTC TAGATTTGAT TGGAGAACCT CTTGAAAAGT 841 TATTACGTGC AACAGAGAGC TTCACTAAAC CATTGAACTC GTTGCCAGCA TCCGATTTAA 41170 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTACGTGC AACAGAGAGC TTCACTAAAC CATTGAACTC GTTGCCAGCA TCCGATTTAA 901 TTCTTGCCCC TCCTGTTAGC GTGGACGACG TTGCTTATGC AGTGATAAAT GCTGTTAAGG 41230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGCCCC TCCTGTTAGC GTGGACGACG TTGCTTATGC AGTGATAAAT GCTGTTAAGG 961 ATGACGACTG TTTTGGCATT TTTACCATCA ACCAAATCAA AGAAGCAGCA GCAGGGGTTA 41290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACGACTG TTTTGGCATT TTTACCATCA ACCAAATCAA AGAAGCAGCA GCAGGGGTTA 1021 AGGTGTAAGA TAAGGTCCAC ATCAAAAAGA AAAATGACAT ACATCTTGTA ACAAAATTAT 41350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGTAAGA TAAGGTCCAC ATCAAAAAGA AAAATGACAT ACATCTTGTA ACAAAATTAT 1081 ATATGTAGAA CATGTATCAT GTCATACAAA ACTCTTGCTT ATGATATCCA TAGTATAATG 41410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGAA CATGTATCAT GTCATACAAA ACTCTTGCTT ATGATATCCA TAGTATAATG 1141 GACCTTTTGA TGCTAAAATA GCCTATTTTC ATCCTGTATT TACTAGTAAG AAGAGCAAAT 41470 |||||||||| |||||||| | | |||||||||| |||||||||| |||||||||| GACCTTTTGA TGCTAAAAAA AAAAAAAAAA ATCCTGTATT TACTAGTAAG AAGAGCAAAT 1201 CAATACTCCA TCTTGCAAAA CACCATGTGT TGGAAGTCTT GGAGATTGAA ATTATAGCAG 41530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATACTCCA TCTTGCAAAA CACCATGTGT TGGAAGTCTT GGAGATTGAA ATTATAGCAG 1261 TGAATTGAAC CGCGCTTCGC GCGGACATAA TTATTGTTAA AGTAGTTCTT TTAGAAGACT 41590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTGAAC CGCGCTTCGC GCGGACATAA TTATTGTTAA AGTAGTTCTT TTAGAAGACT 1321 TAAGTAA 41597 ||||||| TAAGTAA 1328 hqPGS_C08HBa0320P23.1+_SGN-U316185+ (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40804,41018 41597) ******************************************************************************** EST sequence 20 -strand 816 n (File: SGN-U335524-) 1 ATAGTATAGT TGCAGACGGC GCCTTAACAG TCTGGTGTCA GCCTTGATAC CGGAGTGTTT 61 CTTCAAATGG ATAAGACTAT GGGCTCAGCA GTGTTCCCTT TAGAGGATTG GTCTATAACA 121 ATGCTTGGAT CAATGGTAAC TAATGTGTGC TGTCAAGCTG CTAAAGAATA TGGACCCCTA 181 GTTCAATTGA TTTCTGTGCA TGATTACAAT CTACCATCAT TCCTCCAGTC AAGTTACTTC 241 ATAGGGAAAA GAAAGCAGAA TCAAAGGTTC TTTCCAAATT CCCTAGCTCA GGTGTGGTTC 301 TTAGACCTGC CTTTATTATG GAAAAGGAAG GTTGTCGGCT TCGAGATCCC TCTAGATTTG 361 ATTGGAGAAC CTCTTGAAAA GTTATTACGT GCAACAGAGA GCTTCGCTAA ACCATTGAGC 421 TCGTTGCCAG CATCCGATTT AATTCTTGCC CCTCCTGTTA GCGTGGACAA CGTTGCTTAT 481 GCAGTGATAA ATGCTGTTAA GGATGACGAC TGTTTTGGCA TTTTTACCAT CAACCAAATC 541 AAAGAAGCAG CAGCAGGGGT TAAGGTGTAA GATAAGGTCC ACATCTAAAA AGAAAAATGG 601 TCAGGCATCC TGTAACAAAA TTATATATGT AGGACATGTA TCATGTCGTA CTCAAGCTCA 661 TGCTTATGAT ATCCATAGTA TAATGGGCCT TTTGATGCTA AAAAAAAAAA AAAAAAACTC 721 GAGAGTACTT CTAGAGCGGC CGCGGGCCCA TCGATTTTCC ACCCGGGATG GGGATACCAG 781 GTAAGATGTA CCCAATTGCC CATAAGAGGC ATCCTC Predicted gene structure (within gDNA segment 38238 to 43158): Exon 1 39850 39957 ( 108 n); cDNA 81 172 ( 92 n); score: 0.833 Intron 1 39958 40681 ( 724 n); Pd: 0.994 (s: 0.90), Pa: 0.996 (s: 0.94) Exon 2 40682 40804 ( 123 n); cDNA 173 291 ( 119 n); score: 0.943 Intron 2 40805 41017 ( 213 n); Pd: 0.973 (s: 0.94), Pa: 1.000 (s: 0.92) Exon 3 41018 41428 ( 411 n); cDNA 292 703 ( 412 n); score: 0.940 MATCH C08HBa0320P23.1+ SGN-U335524- 0.923 642 0.787 C PGS_C08HBa0320P23.1+_SGN-U335524- (39850 39957,40682 40804,41018 41428) Alignment (genomic DNA sequence = upper lines): GGGCTACAGC AGTTGTTTCA ACTTTAGGAG GTTTTGGTTC TGATGAACAA ATGCTTAGGA 39909 ||||| |||| || || ||| ||||| ||| | |||| || | || ||| | |||||| ||| GGGCT-CAGC AG-TG-TTC- CCTTTA-GAG G-ATTGG-TC T-AT-AAC-A ATGCTT-GGA 129 TCAATGGTGA AGCTAATGTT GTGGCTGTCA ATGCTGCTAA AGAATATGGT CAGTAGCTTT 39969 |||||||| | | ||||||| || ||||||| | |||||||| |||||||| TCAATGGT-A A-CTAATGT- GT-GCTGTCA A-GCTGCTAA AGAATATG.. .......... 172 CATTTTATTT ATTTGAAGAA ATCTGTAAAG CTGAAGTGAC CTTTAGTGAT AAACTTTTGA 40029 .......... .......... .......... .......... .......... .......... 172 GTGGTTAGTT TTTGCAGTGC CTATCTTCTC TATCTTATTT TTACTTTAAC TTGCAATATA 40089 .......... .......... .......... .......... .......... .......... 172 TAATGAATCA GATAAGTCAT GCTTCCCTGT GATGAAGCAT GAGGCATGGT TGACTCCATT 40149 .......... .......... .......... .......... .......... .......... 172 ATTTACTTTA GCTCAGAGCT AAAGATTTTA ATGAGCAGAA AATTCTGCTC GTCACTTCTA 40209 .......... .......... .......... .......... .......... .......... 172 ATTTAATGAC ATTTACCAAC TGAAGCAAAA GCTGAATCCG TCCCCAGATT GAAATAAAAT 40269 .......... .......... .......... .......... .......... .......... 172 GCTTGAGTAA GTATAAATTG TAGGATATGC ATGAAGTAAC TGCTATTATA GATATTTTGC 40329 .......... .......... .......... .......... .......... .......... 172 ATTTCTCTTG CACTGGCTGG GTGCTGGTCT GTTTATTAAT AGAACTTAGC TTACTTATCA 40389 .......... .......... .......... .......... .......... .......... 172 AACAACTATT ACTACCCCTT AATGTTAAAC TAGTTGGGAT TCGTTATATA GAACTTCATG 40449 .......... .......... .......... .......... .......... .......... 172 ATCTATTTTT CTTCACCTAG ACCTGTTATC CAGTATTCAA TAATTTGGGA TTGTCTAAAA 40509 .......... .......... .......... .......... .......... .......... 172 CAGAGGTTCT CTACAATTTG CAATTAACAG TATGGTACTG CTTTGCTGTG TTTAAGAACA 40569 .......... .......... .......... .......... .......... .......... 172 ACCCTTATGG CAGGTTTAAA CTAGTCATTT TGCACACCAT GTTATCATTG TTCCCTTGTT 40629 .......... .......... .......... .......... .......... .......... 172 TCTCCATAAC TACTCATGCC AAGTGTTACA TTATATTTTT TGTTATTTGC AGGGACCCCT 40689 ||||||| .......... .......... .......... .......... .......... ..-GACCCCT 179 AAGTTCATAT TGATTTCTGT GCATGATTAC AATCTACCAT CATTCCTCCA ATCAAGTTAC 40749 |||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| -AGTTCA-AT TGATTTCTGT GCATGATTAC AATCTACCAT CATTCCTCCA GTCAAGTTAC 237 TTCATAGGGA AAAGAAAAGC AGAATCAGAA GTTCTTTCCA AATTCCCTAG CTCAGGTACT 40809 |||||||||| |||| ||||| ||||||| | |||||||||| |||||||||| ||||| TTCATAGGGA AAAG-AAAGC AGAATCAAAG GTTCTTTCCA AATTCCCTAG CTCAG..... 291 CTATTAGATG TTTACTTCCC ATTGATGTGA CCGTGGCAGT CTGAAGCTTA CGGTTGTCTC 40869 .......... .......... .......... .......... .......... .......... 291 TTTGAAATTA TTATGTACAA CAGCACCATG TCTGCAACAA GTTTGTAAAT GAAAAGGGAA 40929 .......... .......... .......... .......... .......... .......... 291 AGTGTTCTGC TTGTTGCTTA CCCTGAACTA GTCCAGCCAC AATTTTTTTG TTACTTACAT 40989 .......... .......... .......... .......... .......... .......... 291 ACTTGAATTT CTCACTGAAA TGTAACAGGT GTGGTTCTTA GACCTGCCTT TATATATGGG 41049 || |||||||||| |||||||||| ||| ||| || .......... .......... ........GT GTGGTTCTTA GACCTGCCTT TAT-TAT-GG 321 AAGAGGAAGG TTGACGGCTT CGAGATCCCT CTAGATTTGA TTGGAGAACC TCTTGAAAAG 41109 || ||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGAAGG TTGTCGGCTT CGAGATCCCT CTAGATTTGA TTGGAGAACC TCTTGAAAAG 381 TTATTACGTG CAACAGAGAG CTTCACTAAA CCATTGAACT CGTTGCCAGC ATCCGATTTA 41169 |||||||||| |||||||||| |||| ||||| ||||||| || |||||||||| |||||||||| TTATTACGTG CAACAGAGAG CTTCGCTAAA CCATTGAGCT CGTTGCCAGC ATCCGATTTA 441 ATTCTTGCCC CTCCTGTTAG CGTGGACGAC GTTGCTTATG CAGTGATAAA TGCTGTTAAG 41229 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ATTCTTGCCC CTCCTGTTAG CGTGGACAAC GTTGCTTATG CAGTGATAAA TGCTGTTAAG 501 GATGACGACT GTTTTGGCAT TTTTACCATC AACCAAATCA AAGAAGCAGC AGCAGGGGTT 41289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGACGACT GTTTTGGCAT TTTTACCATC AACCAAATCA AAGAAGCAGC AGCAGGGGTT 561 AAGGTGTAAG ATAAGGTCCA CATC-AAAAA GAAAAAT-GA CATACATCTT GTAACAAAAT 41347 |||||||||| |||||||||| |||| ||||| ||||||| | || |||| | |||||||||| AAGGTGTAAG ATAAGGTCCA CATCTAAAAA GAAAAATGGT CAGGCATCCT GTAACAAAAT 621 TATATATGTA GAACATGTAT CATGTCATAC -AAAACTCTT GCTTATGATA TCCATAGTAT 41406 |||||||||| | |||||||| |||||| ||| || ||| | |||||||||| |||||||||| TATATATGTA GGACATGTAT CATGTCGTAC TCAAGCTCAT GCTTATGATA TCCATAGTAT 681 AATGGACCTT TTGATGCTAA AA 41428 ||||| |||| |||||||||| || AATGGGCCTT TTGATGCTAA AA 703 hqPGS_C08HBa0320P23.1+_SGN-U335524- (39850 39957,40682 40804,41018 41428) ******************************************************************************** EST sequence 27 -strand 798 n (File: SGN-U340471-) 1 CGATCGGTGC GGGCCTCTTC GCTATACGCC CAGCTGGCGA AAGAGGGATG TGCTGCAAGG 61 CGATTAAGTT GGGTAACGCC AGGGTTTTCC CAGTCACGAC GTTGTAAAAC GACGGCCAGT 121 GAATTGTAAT ACGACTCACT ATAGGGCGAA TTGGGTACCG GGCCCCCCCT CGAGCACCCA 181 TTAAACGTTA CCTTAGAATC TTGGGGCCAT CACTACTATA ATCAATAGAC ATTTTCAATA 241 GACTACTCAC GGAGGCACTA TGCGGAAACC TATGTACTCC TGATCAATTT GTTTCTACAC 301 ACTATGTCGA TACAAAAGGT AAATGAAGTT CAATAAAAGA GCTAGCAAAT ACTAAGAAAA 361 ATAAATAACT TTTTCATGTC CAGTAAAATT TCTTCATGTG TATTTAGGAA CTAAGTTAAA 421 CTTTCGGTTA AGTTTGAGTA AACTCAATAA CTTTGATTCA AATTTTATAT ATATCTCAAT 481 AAATTTATCA ACTCTTCAAA TTATTGATTT AATTGAAATC CAATAATATA AAAGAATCAA 541 AATTTCAAAC TCATAAGATT TAAATTGACT ATATATACTC ATTCAGACCA CTATCAAAAT 601 TTGTCTTACT TTTCATTTTA GCGTAAAACT ATAAAAATTT TGACAAACAT TTTACAATAT 661 ATTTTTTCAT CATATTGCTC TGCAAAAAAT TGCAATGTAT AGTACTTTTC GTATAGTTTT 721 TGAATATCTG AATTTTTCCT GCAGCCCGGG GGATCCACTA GTCTAGAGCG GCCGCACCCG 781 CGGTGAGTTC CAACTAAG Predicted gene structure (within gDNA segment 40129 to 45168): Exon 1 42869 43436 ( 568 n); cDNA 169 737 ( 569 n); score: 0.873 MATCH C08HBa0320P23.1+ SGN-U340471- 0.873 568 0.712 C PGS_C08HBa0320P23.1+_SGN-U340471- (42869 43436) Alignment (genomic DNA sequence = upper lines): CTCGAGCATC CATTAAACTT TACCTTAAAA TCTTGGAGCC ACCGCTACTC TAATCAATAG 42928 |||||||| | |||||||| | ||||||| || |||||| ||| | | ||||| |||||||||| CTCGAGCACC CATTAAACGT TACCTTAGAA TCTTGGGGCC ATCACTACTA TAATCAATAG 228 ACATTTTCAA TAGAGACTAC TAACAGAAGC ACTATGCGGA AACCTATATA CTCCTAATCA 42988 |||||||||| | ||||||| | || || || |||||||||| ||||||| || ||||| |||| ACATTTTCAA T--AGACTAC TCACGGAGGC ACTATGCGGA AACCTATGTA CTCCTGATCA 286 ATTTGTTTCT ATGCACTATG TCGATACAAT AGGTAAATAA AGTTCAATAA AAGAGCTAGC 43048 |||||||||| | ||||||| ||||||||| |||||||| | |||||||||| |||||||||| ATTTGTTTCT ACACACTATG TCGATACAAA AGGTAAATGA AGTTCAATAA AAGAGCTAGC 346 AAATACTAAA AAAAATAAA- AA--ATTTC- TGTCCAGTAA AATTTTTTCA GCTGTATTCA 43104 ||||||||| ||||||||| || |||| |||||||||| ||||| |||| |||||| | AAATACTAAG AAAAATAAAT AACTTTTTCA TGTCCAGTAA AATTTCTTCA TGTGTATTTA 406 GGAACTAAGC TAAACTTTCA GTTAAGTTTG AGTGAATTGA GTAACTTCAA TCCAAACTTT 43164 ||||||||| ||||||||| |||||||||| ||| || | | |||||| | | |||| ||| GGAACTAAGT TAAACTTTCG GTTAAGTTTG AGTAAACTCA ATAACTTTGA TTCAAATTTT 466 ATATGTATCT TAATAAATCT ATCAACTCTA CAAATTATTG ATTAAATTAA AATCCAATAA 43224 |||| ||||| ||||||| | ||||||||| |||||||||| ||| |||| | |||||||||| ATATATATCT CAATAAATTT ATCAACTCTT CAAATTATTG ATTTAATTGA AATCCAATAA 526 TATAAAAGAA TCAAAATTTG AAACTCATAA GCTTGAAATT GACTATATAG ACTCTCTTCG 43284 |||||||||| ||||||||| |||||||||| | || ||||| ||||||||| |||| | | TATAAAAGAA TCAAAATTTC AAACTCATAA GATTTAAATT GACTATATAT ACTCATTCAG 586 TCCACTATCA AAATTTGTCA TGCTTGTCAT TTTTAGAGTC AATTTATAAA AATTTTGACT 43344 ||||||||| ||||||||| | ||| ||| |||||| || || |||||| ||||||||| ACCACTATCA AAATTTGTCT TACTTTTCA- TTTTAGCGTA AAACTATAAA AATTTTGACA 645 AACATTTTAC AATATATTTT TTCATCATAT TGCTATGCAA ACAATTGCTA TGTATAGTAC 43404 |||||||||| |||||||||| |||||||||| |||| ||||| | |||||| | |||||||||| AACATTTTAC AATATATTTT TTCATCATAT TGCTCTGCAA AAAATTGCAA TGTATAGTAC 705 TTTCCGTATA GTTTTTGAAT ATCTGAATTT TT 43436 ||| |||||| |||||||||| |||||||||| || TTTTCGTATA GTTTTTGAAT ATCTGAATTT TT 737 hqPGS_C08HBa0320P23.1+_SGN-U340471- (42869 43436) ******************************************************************************** EST sequence 17 +strand 1087 n (File: SGN-U323457+) 1 CAGCCGCCTC TGTAAAGCTA TACGCAGAAG TCCCATCACA TCATCCTCTT TGCGAGCAAA 61 AACTCCCATC TCCAGGTATA CCTCAAAACT TATCCTATTT TTGTTTCCTT TTTTCTGGTT 121 GTAATTTCAA CCTTTTCTTC CTTCTATGCT ACTGTAATTT GATCATGAAT TATCTAGGCA 181 TTGGAACAAA AATGATTTGC TAATATTACT CTGATAAAAT TATATTCTTT TTCTTAGAAA 241 TAGGGCAAAA GTTCACAATG TTTTGCCAAG TTCTTTCTAT CGGAAGTGTG TCAGTTTTTA 301 TGGAATATTT TTTATATTCG CACTGAAGCC CAGTTATATA TGGACTCATA CATAATAAGG 361 CTCCATTGGT ACGGAAGTAC TCTACCAAAG ATTTGAACCA AGACCTCTGT TTACAAGGAA 421 AGCAATCCCG TCCACAACAT CGCATCTTGC TTATAAGTTT TTGCAGTGAG TATATGTAAA 481 TATATGTGTA TAGTCATTTT TCCTTTTACA AAATACATAG TAATATTTTA GTACAAGGAT 541 TGTAGTTTAT TACTAAATTG ATATTGTAAT GTCAAATTTG GAACTAATGA AGCCAAAGTT 601 TATATCAACT CCGTCTAACA GAGTATCTTT GAGAAGAAAA AGTTAAATCA CGTGAAGCAC 661 AAGATTGTTG ATGCTGAGCA CTAGGAAGAG ATAACTTCTT GATTTGATTG ATGATATAGA 721 TTTTATACAA AGAGAACTAA GGTTGAGCAT GCTCAGTTGC CCATGGATGA AATAAGGATG 781 CTTCTGGAAG TGGTCAAATA TCAGCAATAG TATCGCAATG TAACAGGAAA GGAGAAAAAG 841 AACGACGACA AGTTTCAAAA GACTACCATT AACCCTTTGA ATCTTCACAA GAACATAGTT 901 GGGATGGTGA AAATCATAAT TCATAATCCT CGGGGAAGAA ATTTGCTTCA CCTGAGAAAG 961 AGCAAACAAA CGGATTGAAC TCTTTTTTAG GTGAACTCAA TTTTGTTTGT CCTAAATTAG 1021 ATGTTTGCTA TTTTATTTTT GACAGAGAAA TAATTTATCT TATTGTTACT AGCTTCAAAA 1081 AAAAAAA Predicted gene structure (within gDNA segment 45609 to 43007): Exon 1 44806 44022 ( 785 n); cDNA 24 836 ( 813 n); score: 0.894 PPA cDNA 1077 1087 MATCH C08HBa0320P23.1- SGN-U323457+ 0.894 785 0.722 C PGS_C08HBa0320P23.1-_SGN-U323457+ (44806 44022) Alignment (genomic DNA sequence = upper lines): GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC T-CCATCTCC AGGTATACCT 44748 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCAGAAGTCC CATCACATCA TCCTCTTTGC GAGCAAAAAC TCCCATCTCC AGGTATACCT 83 CAAAACTTAT CCTATTTTTG TTTTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 44688 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAACTTAT CCTATTTTTG T-TTCCTTTT TTCTGGTTGT AATTTCAACC TTTTCTTCCT 142 TCTATGCTAC TGTAATTTGA TTATGAATTA TCTA-GCATT GGAACAAAAA TGATTTGCTA 44629 |||||||||| |||||||||| | |||||||| |||| ||||| |||||||||| |||||||||| TCTATGCTAC TGTAATTTGA TCATGAATTA TCTAGGCATT GGAACAAAAA TGATTTGCTA 202 ATATTACTCT GATAAAATTA TATTCTTTTT C-------T- -GGCAGAAGT TCACAATGTT 44578 |||||||||| |||||||||| |||||||||| | | |||| |||| |||||||||| ATATTACTCT GATAAAATTA TATTCTTTTT CTTAGAAATA GGGCAAAAGT TCACAATGTT 262 TTGCCAAGTT CTTTCTATTG GAAGTGTGTC AGTTTTTATG G---A----- -ATATTCGCA 44527 |||||||||| |||||||| | |||||||||| |||||||||| | | ||||||||| TTGCCAAGTT CTTTCTATCG GAAGTGTGTC AGTTTTTATG GAATATTTTT TATATTCGCA 322 CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 44467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGCCCA GTTATATATG GACTCATACA TAATAAGGCT CCATTGGTAC GGAAGTACTC 382 TACCAAAGAT TTGAACCAAG ACCTCTGTTT ACAAGGATAG CAATCCCGTC CACAACATCG 44407 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TACCAAAGAT TTGAACCAAG ACCTCTGTTT ACAAGGAAAG CAATCCCGTC CACAACATCG 442 CATCTTGCTT ATAAGTTTTT GCAGTGAGTA TATGTAAATA TATGTGTATA GTCATTTTTC 44347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTGCTT ATAAGTTTTT GCAGTGAGTA TATGTAAATA TATGTGTATA GTCATTTTTC 502 CTTTTACAAA ATACATAGTA ATATTTTAGT ATAAGGATTG TAGTTTATTA CTAAATTGAT 44287 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CTTTTACAAA ATACATAGTA ATATTTTAGT ACAAGGATTG TAGTTTATTA CTAAATTGAT 562 ATTGTAATGT CAAATTTGGA ACTAATGAAG CCAAAGTTTA TATCAACTCC GTCTAACAGA 44227 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTAATGT CAAATTTGGA ACTAATGAAG CCAAAGTTTA TATCAACTCC GTCTAACAGA 622 GTATCTTTGA GAAGAAAAAG TTAAATCACG TGAAGCACAA GATTGTTGAT GCTGAGCACT 44167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCTTTGA GAAGAAAAAG TTAAATCACG TGAAGCACAA GATTGTTGAT GCTGAGCACT 682 AGGAAGAGAT AACTTC---- -----TTGAT GATATAGATT TTATACAAAG AGAACTAAGG 44116 |||||||||| |||||| ||||| |||||||||| |||||||||| |||||||||| AGGAAGAGAT AACTTCTTGA TTTGATTGAT GATATAGATT TTATACAAAG AGAACTAAGG 742 TTGAGCATGC TCCGTTGCCC ATGGATGAAA TAAGGATGCT GCTGGAAGTG GTCGAATATC 44056 |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| ||| |||||| TTGAGCATGC TCAGTTGCCC ATGGATGAAA TAAGGATGCT TCTGGAAGTG GTCAAATATC 802 AGCAATATTA TCGCAATGCA ACAGGAAAGG AGAA 44022 ||||||| || |||||||| | |||||||||| |||| AGCAATAGTA TCGCAATGTA ACAGGAAAGG AGAA 836 hqPGS_C08HBa0320P23.1-_SGN-U323457+ (44806 44022) ******************************************************************************** EST sequence 15 +strand 861 n (File: SGN-U343134+) 1 NATCGAAACC NCTGATGTAA CCTCGTTGGC GGCCGCTCTA GAACTAGTGG ATCCCCCGGG 61 CTGCAGGCTT TCCAGGAGAG GATATCTCGT TCTCCCTGAG CATGTATTAA GGTACTATAG 121 AGATGCTGGA GCAAAACCAT TATGGCCAAC GTCAAGTGGC CAACCATCAA AAGCTGACAT 181 CCCTAAGTGC ACCTATTGTG GCGATCATAG GGCTTTTGAA TTTCAGGTTT TACCACAAAT 241 ACTCTATTAT TTTGGTGTGG AAAATGATGT GCATTCTCTT GATTGGGCTA CTATTGCTGT 301 GTACACCTGT GAATCCTCGT GCGATGGACA TATAGCTTAC AAGGAGGAAT TTGCTTGGGT 361 TCAAATTGCA TCTCAATCAA GCACAACCCA GAGATGAGAC GCGTAAAGCA TGGTTTGAAA 421 CAAGATTGAT AATGGACCGC ACTCTACCCT TCACTTAAAT ACCAGACTTC TGGTTTGCCG 481 TGAGATTCAA CTCATGATGT GCACTTAACC TGCACAACAT GCCTCGCGCT AAAATTTTGT 541 TTTCCTTTAT ATTAATTTTT CTCAGATCAT TTTTAGTTTT CCTGGTTAAT TTGCAAACGT 601 TTCACATTAC AACGTCAGTA GTGAATATTT TGTTGTAATA GTATGTTTTT CTCATCAATC 661 GAGGTGTTCA GCGTAAAANA NAAAAAANNA NNNNNAAACT CGAGGGGGGG CCCGGTACCC 721 AATTCGCCCT ATAGTGAGTC GTATTACAAT TCACTGGCCG TCGGTTTACA ACGTCGTGAC 781 TGGGAAAACC CCTGCGTTAC CCAACTTAAT CGCCTTGCAA CACATCCCCC TTTCGCCAAG 841 CTGCGTTAAT AGCGAAGAGG N Predicted gene structure (within gDNA segment 47583 to 42723): Exon 1 46087 46045 ( 43 n); cDNA 68 111 ( 44 n); score: 0.895 Intron 1 46044 45892 ( 153 n); Pd: 0.970 (s: 0.90), Pa: 0.989 (s: 1.00) Exon 2 45891 45777 ( 115 n); cDNA 112 226 ( 115 n); score: 1.000 Intron 2 45776 45615 ( 162 n); Pd: 0.859 (s: 1.00), Pa: 0.143 (s: 1.00) Exon 3 45614 45164 ( 451 n); cDNA 227 677 ( 451 n); score: 1.000 Intron 3 45163 43427 (1737 n); Pd: 0.000 (s: 1.00), Pa: 0.631 (s: 0) Exon 4 43426 43405 ( 22 n); cDNA 678 698 ( 21 n); score: 0.500 MATCH C08HBa0320P23.1- SGN-U343134+ 1.000 631 0.733 C PGS_C08HBa0320P23.1-_SGN-U343134+ (46087 46045,45891 45777,45614 45164,43426 43405) Alignment (genomic DNA sequence = upper lines): CTTTCCAGGA GAGGATATCT CGTAC-CCCT GAGCAAGTAT TAAGGTGATT GAAGTACTTG 46029 |||||||||| |||||||||| ||| | |||| ||||| |||| |||| CTTTCCAGGA GAGGATATCT CGTTCTCCCT GAGCATGTAT TAAG...... .......... 111 CGCCTTTTTT CTACTATATT AATCTTGAAA AACACTATGC GTGCATAGAT AAATGACAGC 45969 .......... .......... .......... .......... .......... .......... 111 CGCCACCTTC TTTGCTATTC CCAAAGAATT ATGATCACAT GACTTGTCAC TGAGTTCGAT 45909 .......... .......... .......... .......... .......... .......... 111 CATTATCTTG GAAATAGGTA CTATAGAGAT GCTGGAGCAA AACCATTATG GCCAACGTCA 45849 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GTA CTATAGAGAT GCTGGAGCAA AACCATTATG GCCAACGTCA 154 AGTGGCCAAC CATCAAAAGC TGACATCCCT AAGTGCACCT ATTGTGGCGA TCATAGGGCT 45789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGCCAAC CATCAAAAGC TGACATCCCT AAGTGCACCT ATTGTGGCGA TCATAGGGCT 214 TTTGAATTTC AGGTATAATG AAGCTTTTGC TTTGCTTACA AGTCAACTAG TGGTGATTCT 45729 |||||||||| || TTTGAATTTC AG........ .......... .......... .......... .......... 226 CAAACTACTA AAAGCAGTTG TATGTCTCTG GCTGTCTTGT AGAAATTGTA GCTTAAGTTG 45669 .......... .......... .......... .......... .......... .......... 226 TTGGTTGCCT GAAAAGTATT TTCAATCCAT GCTCTTTTTT TCTGCCGCTT CCAGGTTTTA 45609 |||||| .......... .......... .......... .......... .......... ....GTTTTA 232 CCACAAATAC TCTATTATTT TGGTGTGGAA AATGATGTGC ATTCTCTTGA TTGGGCTACT 45549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACAAATAC TCTATTATTT TGGTGTGGAA AATGATGTGC ATTCTCTTGA TTGGGCTACT 292 ATTGCTGTGT ACACCTGTGA ATCCTCGTGC GATGGACATA TAGCTTACAA GGAGGAATTT 45489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTGTGT ACACCTGTGA ATCCTCGTGC GATGGACATA TAGCTTACAA GGAGGAATTT 352 GCTTGGGTTC AAATTGCATC TCAATCAAGC ACAACCCAGA GATGAGACGC GTAAAGCATG 45429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGGGTTC AAATTGCATC TCAATCAAGC ACAACCCAGA GATGAGACGC GTAAAGCATG 412 GTTTGAAACA AGATTGATAA TGGACCGCAC TCTACCCTTC ACTTAAATAC CAGACTTCTG 45369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGAAACA AGATTGATAA TGGACCGCAC TCTACCCTTC ACTTAAATAC CAGACTTCTG 472 GTTTGCCGTG AGATTCAACT CATGATGTGC ACTTAACCTG CACAACATGC CTCGCGCTAA 45309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGCCGTG AGATTCAACT CATGATGTGC ACTTAACCTG CACAACATGC CTCGCGCTAA 532 AATTTTGTTT TCCTTTATAT TAATTTTTCT CAGATCATTT TTAGTTTTCC TGGTTAATTT 45249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTGTTT TCCTTTATAT TAATTTTTCT CAGATCATTT TTAGTTTTCC TGGTTAATTT 592 GCAAACGTTT CACATTACAA CGTCAGTAGT GAATATTTTG TTGTAATAGT ATGTTTTTCT 45189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAACGTTT CACATTACAA CGTCAGTAGT GAATATTTTG TTGTAATAGT ATGTTTTTCT 652 CATCAATCGA GGTGTTCAGC GTAAAATTGG GATCTTATGA TTTCAAAAGT TTGTCTCTCT 45129 |||||||||| |||||||||| ||||| CATCAATCGA GGTGTTCAGC GTAAA..... .......... .......... .......... 677 TCTACCAGAT TTGATAAATC TGTAATAGGT AAGTACCCTT ACTACAGTAG CTAGTATTCA 45069 .......... .......... .......... .......... .......... .......... 677 ATCTATATAT ATATATATAT ATATATAAAA GAGGATCTTT AGTTTGCTGT TGTGGCATGC 45009 .......... .......... .......... .......... .......... .......... 677 CTAAATGATC AGGAAATTTA TTTATATACT TTCTCAAATT TTTTCCTATT TTTCCATATT 44949 .......... .......... .......... .......... .......... .......... 677 AATGTCTTTT AACTAATTAA AGTTTAAAAA TAGAAAGACG TCATTTACCG TTATAATTGT 44889 .......... .......... .......... .......... .......... .......... 677 ATCCCTTTAA CCGTTTCCTC AAATTAAGCC CATAATAATT GCATACGTCG TTTGGCATTC 44829 .......... .......... .......... .......... .......... .......... 677 TGAATTCAAA ATTAACGTCT ACGCAGAAGT CCCATCACAT CATCCTCTTT GCGAGCAAAA 44769 .......... .......... .......... .......... .......... .......... 677 ACTCCATCTC CAGGTATACC TCAAAACTTA TCCTATTTTT GTTTTCCTTT TTTCTGGTTG 44709 .......... .......... .......... .......... .......... .......... 677 TAATTTCAAC CTTTTCTTCC TTCTATGCTA CTGTAATTTG ATTATGAATT ATCTAGCATT 44649 .......... .......... .......... .......... .......... .......... 677 GGAACAAAAA TGATTTGCTA ATATTACTCT GATAAAATTA TATTCTTTTT CTGGCAGAAG 44589 .......... .......... .......... .......... .......... .......... 677 TTCACAATGT TTTGCCAAGT TCTTTCTATT GGAAGTGTGT CAGTTTTTAT GGAATATTCG 44529 .......... .......... .......... .......... .......... .......... 677 CACTGAAGCC CAGTTATATA TGGACTCATA CATAATAAGG CTCCATTGGT ACGGAAGTAC 44469 .......... .......... .......... .......... .......... .......... 677 TCTACCAAAG ATTTGAACCA AGACCTCTGT TTACAAGGAT AGCAATCCCG TCCACAACAT 44409 .......... .......... .......... .......... .......... .......... 677 CGCATCTTGC TTATAAGTTT TTGCAGTGAG TATATGTAAA TATATGTGTA TAGTCATTTT 44349 .......... .......... .......... .......... .......... .......... 677 TCCTTTTACA AAATACATAG TAATATTTTA GTATAAGGAT TGTAGTTTAT TACTAAATTG 44289 .......... .......... .......... .......... .......... .......... 677 ATATTGTAAT GTCAAATTTG GAACTAATGA AGCCAAAGTT TATATCAACT CCGTCTAACA 44229 .......... .......... .......... .......... .......... .......... 677 GAGTATCTTT GAGAAGAAAA AGTTAAATCA CGTGAAGCAC AAGATTGTTG ATGCTGAGCA 44169 .......... .......... .......... .......... .......... .......... 677 CTAGGAAGAG ATAACTTCTT GATGATATAG ATTTTATACA AAGAGAACTA AGGTTGAGCA 44109 .......... .......... .......... .......... .......... .......... 677 TGCTCCGTTG CCCATGGATG AAATAAGGAT GCTGCTGGAA GTGGTCGAAT ATCAGCAATA 44049 .......... .......... .......... .......... .......... .......... 677 TTATCGCAAT GCAACAGGAA AGGAGAAATT TGCTTCACCT GAGAAAGGGC AAACAAACGG 43989 .......... .......... .......... .......... .......... .......... 677 ATTGCAAACA GACACTTTGA ACTCTTTTTT AGGTGAACTC AATTTTGTTT GTCCTAAATT 43929 .......... .......... .......... .......... .......... .......... 677 AGATGTTTGC TATTTTATTT TTGACAGAGA AATAATTTAT CTAGCTTCAA ATGTAATCTT 43869 .......... .......... .......... .......... .......... .......... 677 TGAGAGTAGT TCCTCTTCAT GTTCTGGAGT GGGCGTATTT GTGTATTAAT CTATATCTAT 43809 .......... .......... .......... .......... .......... .......... 677 AACAAAAAAG GTGACGTAGT ACTGGGCGTG TTTATCTTAT TTATAATAAT TTTAAAATTG 43749 .......... .......... .......... .......... .......... .......... 677 CCTAGATAAT TACTCAATTA AATGAAAAAC TTCCATTTCC TAATTAAATT GCAATTCATG 43689 .......... .......... .......... .......... .......... .......... 677 TTTTAATAAC CAATGAGAGT GAATCTGCAT AAAAATTGTG GCAAAGAGTG TTTCTAACGT 43629 .......... .......... .......... .......... .......... .......... 677 TAAATCACAA AGGAAAAGTA ACATTGTGAT ATTTAAGGCT CTCTTCTATG CAATTGTATG 43569 .......... .......... .......... .......... .......... .......... 677 ATTCCAATAA TTGAAATATA TACATATATA TAATACTTTT TGTCATTTTT AGTTGTTATG 43509 .......... .......... .......... .......... .......... .......... 677 TTGTGGTTTT TGAAAGTCAA ATTAATAAAT TTTAAATTTA AATTAAATTA CATTTATTTG 43449 .......... .......... .......... .......... .......... .......... 677 ATATTTTAAA CAAAAAATTC AGATATTCAA AAACTATACG GAAA 43405 | | || ||| | ||| .......... .......... ..ANA-NAAA AAANNANNNN NAAA 698 hqPGS_C08HBa0320P23.1-_SGN-U343134+ (46087 46045,45891 45777,45614 45164) ******************************************************************************** EST sequence 21 +strand 863 n (File: SGN-U325769+) 1 GTTGCTCTGT TCCAGCTGTT TGCTGTTTGC TGTTTGAGGT CTCAACACTC GCTTAATCTC 61 AGCTAAATAT AATTCAAAGC TGTAAAGGAA ACGAGAAAAC ATCTAATTTA GTTTAGCGAA 121 AATGGAGGAA GAATTTAATG CTGGAAGGAT CAAAGGCGCT GCTAAGAGGA CTTTGCAAAT 181 TACACCTCTT GATGAGGAAG ATCAAGAAGA GGTTCAAATT GATGACAGTG GAGATGTTGA 241 TTCGTATGAT GATGATGATG AGACGGAGGA GGAGGATGAA GACAAGGAAC CTGTGGGATT 301 AGGGGTTCTT GAAAAGCCTG AGAATTCATG GTCACTGCTA CGTGAGTTAT TTCCAAGCAA 361 AGCTGGGGGT ACTCCGGCTT GGTTGGATCC AATAAACTTG CCAACAGGAA AATCCTGTCT 421 TTGCGATATC TGTGGCGAGC CTTTGCAGTT CATGCTTCAG GTTTACGCAC CACTCACGGA 481 GAAGGATTCG ACTTTTCATC GCACCTTATT TCTCTTCATG TGTACATCAA TGACCTGTCT 541 CCTTAAAGAT CAACATGAGC AGTGGAAAAG GAACCAAGAC AAGCAATCCA GGAGTGTCAA 601 GGTCTTTCGT TGCCAATTGC CCCGTGATAA CTCTTTTTAC TCCAGTGAAC CCCCAAGAAA 661 CAATGGGAAA GATAAACCTT CTAGTCCTGG AGCTGTTCTC TGTGGCTGGT GTGGTACATG 721 GAAAGGAGAT AAAGTCTGTG GTGGTTGCCG AAGAGTACAC TACTGCTCGG AGAAACATCA 781 GACTGTTCAT TGGAAATCAG GTCATAAACA ACGCTGCTTA CCCTCAAGCA TTTCTCAGGA 841 TGCATCTGAA CCTAGTAATA GTA Predicted gene structure (within gDNA segment 50669 to 45890): Exon 1 50069 49959 ( 111 n); cDNA 1 111 ( 111 n); score: 1.000 Intron 1 49958 49652 ( 307 n); Pd: 0.939 (s: 1.00), Pa: 0.532 (s: 1.00) Exon 2 49651 49387 ( 265 n); cDNA 112 376 ( 265 n); score: 1.000 Intron 2 49386 49274 ( 113 n); Pd: 0.236 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 49273 49190 ( 84 n); cDNA 377 460 ( 84 n); score: 1.000 Intron 3 49189 47269 (1921 n); Pd: 0.991 (s: 1.00), Pa: 0.835 (s: 1.00) Exon 4 47268 47135 ( 134 n); cDNA 461 594 ( 134 n); score: 1.000 Intron 4 47134 47041 ( 94 n); Pd: 0.974 (s: 1.00), Pa: 0.217 (s: 1.00) Exon 5 47040 46943 ( 98 n); cDNA 595 692 ( 98 n); score: 1.000 Intron 5 46942 46746 ( 197 n); Pd: 0.949 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 46745 46657 ( 89 n); cDNA 693 781 ( 89 n); score: 1.000 Intron 6 46656 46582 ( 75 n); Pd: 0.958 (s: 1.00), Pa: 0.908 (s: 1.00) Exon 7 46581 46500 ( 82 n); cDNA 782 863 ( 82 n); score: 1.000 MATCH C08HBa0320P23.1- SGN-U325769+ 1.000 863 1.000 C PGS_C08HBa0320P23.1-_SGN-U325769+ (50069 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) Alignment (genomic DNA sequence = upper lines): GTTGCTCTGT TCCAGCTGTT TGCTGTTTGC TGTTTGAGGT CTCAACACTC GCTTAATCTC 50010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTCTGT TCCAGCTGTT TGCTGTTTGC TGTTTGAGGT CTCAACACTC GCTTAATCTC 60 AGCTAAATAT AATTCAAAGC TGTAAAGGAA ACGAGAAAAC ATCTAATTTA GGTATTTTTC 49950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AGCTAAATAT AATTCAAAGC TGTAAAGGAA ACGAGAAAAC ATCTAATTTA G......... 111 TCCTCTTAAT CGTTGTTTTT CAAAGCTTAT ATGAGCTGGT TCTCTGTAGA AAAGTAAGTC 49890 .......... .......... .......... .......... .......... .......... 111 TTTTTGATGG GAGTTCGTTA TTTTCCCAGT TGGTTCTTCA ACATGAGGTC TTTTTAACCC 49830 .......... .......... .......... .......... .......... .......... 111 TTTATTTACT TCTTTCATCA TGACATGAAC TGGGTCTCCG TAAAAATCGA GTCTTGATGG 49770 .......... .......... .......... .......... .......... .......... 111 AGTTTTAGTA TTTTGCTTGT TGTGAATTCC CTTAGTTTCT TAATTGGCTC CTGAACATGA 49710 .......... .......... .......... .......... .......... .......... 111 GGTTGTGTGA TTTTTCTGGG AAGTAATTGG TTTGTTTTTC AATCATCATT GTGGATAGTT 49650 || .......... .......... .......... .......... .......... ........TT 113 TAGCGAAAAT GGAGGAAGAA TTTAATGCTG GAAGGATCAA AGGCGCTGCT AAGAGGACTT 49590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCGAAAAT GGAGGAAGAA TTTAATGCTG GAAGGATCAA AGGCGCTGCT AAGAGGACTT 173 TGCAAATTAC ACCTCTTGAT GAGGAAGATC AAGAAGAGGT TCAAATTGAT GACAGTGGAG 49530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATTAC ACCTCTTGAT GAGGAAGATC AAGAAGAGGT TCAAATTGAT GACAGTGGAG 233 ATGTTGATTC GTATGATGAT GATGATGAGA CGGAGGAGGA GGATGAAGAC AAGGAACCTG 49470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGATTC GTATGATGAT GATGATGAGA CGGAGGAGGA GGATGAAGAC AAGGAACCTG 293 TGGGATTAGG GGTTCTTGAA AAGCCTGAGA ATTCATGGTC ACTGCTACGT GAGTTATTTC 49410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTAGG GGTTCTTGAA AAGCCTGAGA ATTCATGGTC ACTGCTACGT GAGTTATTTC 353 CAAGCAAAGC TGGGGGTACT CCGGTATGGT TAGAAAAGTT CTCTCGTTGA GTCGTTTCCG 49350 |||||||||| |||||||||| ||| CAAGCAAAGC TGGGGGTACT CCG....... .......... .......... .......... 376 CTATCTTCCA TATTCATTAG GGTGAAAGAC GCCTCCAAGG TTGATTGAGT TTTAAATTTT 49290 .......... .......... .......... .......... .......... .......... 376 GTTTCTGTGA ATGTAGGCTT GGTTGGATCC AATAAACTTG CCAACAGGAA AATCCTGTCT 49230 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCTT GGTTGGATCC AATAAACTTG CCAACAGGAA AATCCTGTCT 420 TTGCGATATC TGTGGCGAGC CTTTGCAGTT CATGCTTCAG GTATATCTTT ATGTTCTCGT 49170 |||||||||| |||||||||| |||||||||| |||||||||| TTGCGATATC TGTGGCGAGC CTTTGCAGTT CATGCTTCAG .......... .......... 460 GGAAGTTACA ATTTTAGCTG CACGTTGTAT CTTACATATC CTTTAGCCTA ACAACAACAG 49110 .......... .......... .......... .......... .......... .......... 460 ATGCAGTGTA GGTAGCCTCA CAAAGTGGGG TCTGGGGATC CTTTAGCCTA CTAATTGGAA 49050 .......... .......... .......... .......... .......... .......... 460 AACATTGTCT GATACAAAAT GAAGTTAGAA GTGAAGTCTT TTTAAGTTTA GGGAATAATA 48990 .......... .......... .......... .......... .......... .......... 460 TTGATAATTC TAGGAATATA TTTCATTATT TCATGTCATA ATATGCTTAA ACAATGAAGG 48930 .......... .......... .......... .......... .......... .......... 460 AACTACCCAA ATAACCAGTT AATGTTACTG AAGCTAAAAG TAATTATGGT TTTAGCTTGT 48870 .......... .......... .......... .......... .......... .......... 460 AACTTTTTGG AGGTGGCCAG CAATACCCTT AATGCTGAAG AATACAACTT TAACGGTATC 48810 .......... .......... .......... .......... .......... .......... 460 AAAAAAAAAA AACGTCTCGA TCTAATTTAC AAAAGACAAC ATTTCCAATC TAACTTGACT 48750 .......... .......... .......... .......... .......... .......... 460 TTTATACAGC ATAAAAGTCT AAATCTAACT GTACAATATA CAACATAAGA GGAGATGTGG 48690 .......... .......... .......... .......... .......... .......... 460 TTCTTTTTTC TTATTATCCT CTTGGAGTTG GTCAATGGAA CTTTAGCTCT TCTGTAGGTT 48630 .......... .......... .......... .......... .......... .......... 460 TAGGATTTAA TTGTTAATGA CTTCTGAATA TATTTCTCCT ATCTAAGTTT AAGTCTATCA 48570 .......... .......... .......... .......... .......... .......... 460 ATGTTTCTCC CATTGCATGT TTCTTTCAAC TAGATGGTCT ACCAAATGGC TTGAGCTTAT 48510 .......... .......... .......... .......... .......... .......... 460 AGTGCGAAAA ATTAGGGCCA TGTAGATACT AGTACAACGC CTCTTCTTTT GAGAATTCTC 48450 .......... .......... .......... .......... .......... .......... 460 GTATAAGCCC CAACCCCCTT TCTGTTCCAG CAGTGCAGCA GCTTTGTAAT GTAGATATGC 48390 .......... .......... .......... .......... .......... .......... 460 ATGATCCAAT GCCTGAAATT TTATAATACA TGCTCCATAA TTGACTTGTG ACCCTGCAAT 48330 .......... .......... .......... .......... .......... .......... 460 GGAAAAAGAA GAAACTATAT TCTTTGATCG CTCCACACAA TGGACACCTT CTGCAAAGCT 48270 .......... .......... .......... .......... .......... .......... 460 GAAATCCCCC TGTTTGAAGG TTTATTTGAG TGAGAAAGCT TCCCTAATCA AAATCCAAGA 48210 .......... .......... .......... .......... .......... .......... 460 AAAGCAAGAG ACCTTCAAAG GAGCTCTAAT CTATTGAACC AAATCTTCCA AGCCCATATA 48150 .......... .......... .......... .......... .......... .......... 460 TCCTTCTTGT AACTTGTTAG ATTCCATCAT AGTGTAGCAA CTTTTGACTG AATAAAGTCC 48090 .......... .......... .......... .......... .......... .......... 460 TTTGGAGTGT CTCATCCAAC TGATGGAGTT AACTTTGTTG TGATCCAAAA CTACACTGTT 48030 .......... .......... .......... .......... .......... .......... 460 TAGCATCTGA AGCAAAAAGC CTAAGCTTTC TACTTCCCAG TCATTCAAAC TCCTTCCCAG 47970 .......... .......... .......... .......... .......... .......... 460 AAAGAGATTC CAACCTTTTG CTAAATTAAA TTTTGTAATT TTCTTTCCAT TGTGTTGTGG 47910 .......... .......... .......... .......... .......... .......... 460 GGGGATAAAC TGTATATGTC CAAGAATTGG TCTTTAAGCA GATGTAGCCT TACCATTTTT 47850 .......... .......... .......... .......... .......... .......... 460 TTTGCCAAAA TCTGATTCTC TTTCCATTAC TGGGAAGAGA AACCGATATT TGTTTCAAAT 47790 .......... .......... .......... .......... .......... .......... 460 TTTCTCCAAT ATCCTCGAAC GTTATTTCCA TAATCCTGTT CAATGAGGTG CTTAAGAGAT 47730 .......... .......... .......... .......... .......... .......... 460 TTTGGTGTAC CGTGGGTTCT CTAAAGTGAA CTTCTCCAAC CAAGGTTCTC TTCCAAAGTG 47670 .......... .......... .......... .......... .......... .......... 460 CATTTTCCTC AATATTGCAT CTCCAAAGCC ATTTCATCAA GAGGCATTTG TTATGACTTT 47610 .......... .......... .......... .......... .......... .......... 460 TAGGTTTTTG ATTCTCAGTC ACCCATTCCT TTTGTCTCTG GTCACTGTTT TCCAATAATC 47550 .......... .......... .......... .......... .......... .......... 460 CAATTTACAA GGAATGCTAA AGTTGTTTGT TTATCGTCGT GCAAAAGAAA GTCGTCTCCT 47490 .......... .......... .......... .......... .......... .......... 460 TAAGTTGTCC AGGCGCTTCA CCTTGATTAG TTCATTTGCT GCCTATTTTT CAATAATGTA 47430 .......... .......... .......... .......... .......... .......... 460 TTAGTTATTT CTGCATCATA TGGGCTCTAC ATCTACTTGT GTGCAGGGTT CCTTTTCTAC 47370 .......... .......... .......... .......... .......... .......... 460 CATTTGTCCT CTTTTTTGTT TTTCCCGGTG TGGCAAAAGA AGAGTGGAAA GAGGAAACTG 47310 .......... .......... .......... .......... .......... .......... 460 AATCGTTGTG TTTCCTTTTT GTTTTTTTAC TCATTGTTAA GGTTTACGCA CCACTCACGG 47250 ||||||||| |||||||||| .......... .......... .......... .......... .GTTTACGCA CCACTCACGG 479 AGAAGGATTC GACTTTTCAT CGCACCTTAT TTCTCTTCAT GTGTACATCA ATGACCTGTC 47190 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTC GACTTTTCAT CGCACCTTAT TTCTCTTCAT GTGTACATCA ATGACCTGTC 539 TCCTTAAAGA TCAACATGAG CAGTGGAAAA GGAACCAAGA CAAGCAATCC AGGAGGTACT 47130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCCTTAAAGA TCAACATGAG CAGTGGAAAA GGAACCAAGA CAAGCAATCC AGGAG..... 594 TCGTCATAAT TGAATTTCGT TGTGTGACTA TAAACTACCA TGCTTAGTAT CCGTTCATCT 47070 .......... .......... .......... .......... .......... .......... 594 AACTCTGATT ACTGAATGTG TTTTTCAAGT GTCAAGGTCT TTCGTTGCCA ATTGCCCCGT 47010 | |||||||||| |||||||||| |||||||||| .......... .......... .........T GTCAAGGTCT TTCGTTGCCA ATTGCCCCGT 625 GATAACTCTT TTTACTCCAG TGAACCCCCA AGAAACAATG GGAAAGATAA ACCTTCTAGT 46950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTCTT TTTACTCCAG TGAACCCCCA AGAAACAATG GGAAAGATAA ACCTTCTAGT 685 CCTGGAGGTA ATTCCTTGGA AGGATCTACT TTTTTCATTG GTCAATGACT CAAGTTTACA 46890 ||||||| CCTGGAG... .......... .......... .......... .......... .......... 692 ATTGATTTGA TTAAGTATTT GCGATTATCT ATCAAAGTCG TTGGCCTTTC CTTTTCTTTC 46830 .......... .......... .......... .......... .......... .......... 692 AACTCCATAT TAATTGATCA CCCAAAATAT TTACACATAA ATTTCCTGTA TTTTTTGTAA 46770 .......... .......... .......... .......... .......... .......... 692 TACGTCTTGT CTTTCATTTC TCAGCTGTTC TCTGTGGCTG GTGTGGTACA TGGAAAGGAG 46710 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CTGTTC TCTGTGGCTG GTGTGGTACA TGGAAAGGAG 728 ATAAAGTCTG TGGTGGTTGC CGAAGAGTAC ACTACTGCTC GGAGAAACAT CAGGTCAGCA 46650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ATAAAGTCTG TGGTGGTTGC CGAAGAGTAC ACTACTGCTC GGAGAAACAT CAG....... 781 ACGTGTACCA TGCTTTGTTT GCTCCTTCCT GTTTGGACGG AATTTTCCTA ACTGAATCCA 46590 .......... .......... .......... .......... .......... .......... 781 ATTTGCAGAC TGTTCATTGG AAATCAGGTC ATAAACAACG CTGCTTACCC TCAAGCATTT 46530 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AC TGTTCATTGG AAATCAGGTC ATAAACAACG CTGCTTACCC TCAAGCATTT 833 CTCAGGATGC ATCTGAACCT AGTAATAGTA 46500 |||||||||| |||||||||| |||||||||| CTCAGGATGC ATCTGAACCT AGTAATAGTA 863 hqPGS_C08HBa0320P23.1-_SGN-U325769+ (50069 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) ******************************************************************************** EST sequence 31 +strand 1101 n (File: SGN-U322164+) 1 TCAGCAGAGT AGAAAGCGAA AATGGGGGAA AACGATTTGT GGGACGATTC AGCCCTTGTT 61 AATGCGTTCA ACGATGCCGT ATCCAAGTAC AAGATTATGC ATAGTTTAGA AGCTAAAGTT 121 AGCAGCAAAG AGGAGAATGT GACAGCTCCT GATGACGGAA GCAATGAGCT GAAAAGCAAA 181 GGGGAGGGAG GTGATAACAG CAAACTTGCA CCAGATACCA CTACAGAAAT GGGGGATGCA 241 AGCAGCCTTC CACCAGTAAA AGAAAATTCC TCTTTTGAGG CAGTTCCTCC TCAAAACCAC 301 ACTGGTCAAC TGAATGAGCA AAACACCCAG TATAAGGCCA TAGAGAAGTG CAGTTCACAG 361 AGTTTAGAAG ATTACAACCA GTTACTCTAC AAATATTACG AACTTGAGGA TCAAAGGCAA 421 AAGATTTTGC AGCAACTTAA CCAGTTTGGC ATCTGGGGTG ATCAAAATTC TGGTTCTGCT 481 TCTCAAGAAC ATCAAGCTTA TGCATCACAT AATTTAAATC CAACAGAGTC TTCTTTCTAC 541 TGCCCATATG GATGCCAAAG TTGGGTATCT CCTTGCACTG CATCACCTTG TTGTTTGGGT 601 GTAAATGAGG ATGACAAACC ATGCGATGCG TCTATACGAT GTGTTCAAGA AAAAAAATCA 661 TCTCCTCAAA ACCCTAGTTT GGTTGATACA GCAAAGGAAG CTGCAGAAAA AGCACTCTCC 721 TCTTTAAAGC AAGCTTCTAA CACGGCTTCA CTGAATTCAT TTGCAAAGGA AGGAAAACAA 781 ATAGAGATGA TGAACCCTGT TGCTGCAGAG AAAACTGGCG GCTTGGAGAC GGATCTATCG 841 GAAGTGCTAA ATGCATGGTA TTCTGCGGGC CTTTACACTG GAAAGTATCT TTCAGAGCAA 901 TCCAAGAAGA GAGATGGTTA GCGTTGTACT GATTCAGTTG GAACACAAAT GTGGTGTTGT 961 CAATACGACA CAGGAAAAAT TCATTGTATT AATGTTTGTG AACTAGAATT CAAAGCTGTG 1021 ATGTAAAACT AGATGTTGTT GTACAGCATT TCTGGTAGGT TGATTTTTCC AAATATTGAC 1081 AAAACAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 57405 to 49610): Exon 1 56805 56713 ( 93 n); cDNA 1 93 ( 93 n); score: 1.000 Intron 1 56712 55040 (1673 n); Pd: 0.991 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 2 55039 54957 ( 83 n); cDNA 94 176 ( 83 n); score: 1.000 Intron 2 54956 53868 (1089 n); Pd: 0.977 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 53867 53272 ( 596 n); cDNA 177 772 ( 596 n); score: 0.997 Intron 3 53271 52436 ( 836 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 52435 52324 ( 112 n); cDNA 773 884 ( 112 n); score: 1.000 Intron 4 52323 51206 (1118 n); Pd: 0.781 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 5 51205 51006 ( 200 n); cDNA 885 1086 ( 202 n); score: 0.918 Intron 5 51005 50550 ( 456 n); Pd: 0.000 (s: 0.98), Pa: 0.902 (s: 0) Exon 6 50549 50543 ( 7 n); cDNA 1087 1093 ( 7 n); score: 0.857 MATCH C08HBa0320P23.1- SGN-U322164+ 0.983 1091 0.991 C PGS_C08HBa0320P23.1-_SGN-U322164+ (56805 56713,55039 54957,53867 53272,52435 52324,51205 51006,50549 50543) Alignment (genomic DNA sequence = upper lines): TCAGCAGAGT AGAAAGCGAA AATGGGGGAA AACGATTTGT GGGACGATTC AGCCCTTGTT 56746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCAGAGT AGAAAGCGAA AATGGGGGAA AACGATTTGT GGGACGATTC AGCCCTTGTT 60 AATGCGTTCA ACGATGCCGT ATCCAAGTAC AAGGTTCTTC CTTCACTCTA CGTTCTATGA 56686 |||||||||| |||||||||| |||||||||| ||| AATGCGTTCA ACGATGCCGT ATCCAAGTAC AAG....... .......... .......... 93 AAACTCGTAC TTCCATTGCT CTTACTATTT CTATTTTTCA ACATCTTCAA ATGCATATCA 56626 .......... .......... .......... .......... .......... .......... 93 GCTGTATTTT CAATATTTGC TTTCAACGCA GTTCTGCTGA ACTTAGAATT GCTCGTCTTT 56566 .......... .......... .......... .......... .......... .......... 93 CTAGATGTAT TAGTAATCTA ATCATTTCAT ATGTATTTCT CTGTTTGGCG ATAATTTTTG 56506 .......... .......... .......... .......... .......... .......... 93 GACTTTGATT AGTATAATTT AGGTGAAAAA TGAAATTCAA ATGGAGTGGA ATGGGATAAT 56446 .......... .......... .......... .......... .......... .......... 93 AGCGGGTTCA TTAACCCGAA CAGTGTTGTA ATTGAGGGTA GCTGTTGTTT TAATATTATT 56386 .......... .......... .......... .......... .......... .......... 93 TTTGCAATTG TAATACTTTC TGGCTTCAAT TTAAGATATT CAGGAAGAAT ATTTAAGAAA 56326 .......... .......... .......... .......... .......... .......... 93 CCCCATTTTT TTGTTTTTCC TTGGACTACC AGCACGAAAT TGACCAGGCT ATAGAGTGTT 56266 .......... .......... .......... .......... .......... .......... 93 GATCCCATTG TATGTGGTCA ATAAGGAACA TGGTGCCATT TGGTCTTGAT TATAGTTGTT 56206 .......... .......... .......... .......... .......... .......... 93 TTCAGGTCAT CTTGTACGCA CTCGACTATT CAACCAAGTA ACTCATAATT CTGAGTCCTC 56146 .......... .......... .......... .......... .......... .......... 93 GACTAGCACA GGTGCGGGGT AACTCCCAAT CAAGGCGTCG GTATAATAGC AGCGTAGTTA 56086 .......... .......... .......... .......... .......... .......... 93 GTCTCTTTTA GGTTTAATTT TTTCACTTGA CAACTTTTGC TATTGGATTT TAGTCTTGAG 56026 .......... .......... .......... .......... .......... .......... 93 TAAACCTCTA GGCAGTTGGA CATTGTGAAG AGATTGGAAG CGTTAAGTTG GACATGAGAA 55966 .......... .......... .......... .......... .......... .......... 93 AATGATATTT ACATGAGGAC CCATCTTTTC TACTTTAATT GTGCCTTTCA TTTATTTGAC 55906 .......... .......... .......... .......... .......... .......... 93 TTTGGGTTCT AATATGTCAA GGGAATGATT TATGGTGTTT TTTGCTGCCA ATGTATCTGA 55846 .......... .......... .......... .......... .......... .......... 93 GATGACGGGG AAGAAAAGAA CAGAAGCGAT GTGGATTCCG TTATATTGTG TTTTAGGAGG 55786 .......... .......... .......... .......... .......... .......... 93 AGCACTAGAG AATTGTGTGG TGCTGGAATG AGGGAAAGGA GGGCTAAAGA GAGAAAAAGT 55726 .......... .......... .......... .......... .......... .......... 93 TGCTGCTTTC TGTTAGGGGA GGGAAGAAAG CATATCCTAC AATGTATGTA CCAGAGAGCA 55666 .......... .......... .......... .......... .......... .......... 93 ATATAAAGTT CTTTTGAAGT AATTTTTAGG TAAACTTTCA AGGATATAGT TCATTTAATT 55606 .......... .......... .......... .......... .......... .......... 93 TACCATGTCC TGCGTTTGAG GATGTTATGA GAGATGTTTT TGTCTTTATC TGAGTGCAAG 55546 .......... .......... .......... .......... .......... .......... 93 TAGAACTTTC CTGGGTGCAT CTTCCGACTT CCATTGTGCA GGCTATTTTC GTATGTGAAG 55486 .......... .......... .......... .......... .......... .......... 93 TTAGGTCTAC TAATTTCTTT TCTGTCGTTC TTACTTAAAA TTTTGTTGAA CTTGAATTTA 55426 .......... .......... .......... .......... .......... .......... 93 ATTTGTTTTT ATCTCTGGGA TACTGGATGC CTAGGTTGAA TGAAAGTATT GTGGCTCTCT 55366 .......... .......... .......... .......... .......... .......... 93 TTTCTCCCCC TTTTCTGTTC CTTCTTTTTC ACGATCATAA TTCTTGACAT CATTTTGATT 55306 .......... .......... .......... .......... .......... .......... 93 CCACTACTTC TCTGCATTGG CCATGATCTT TTGTCTCCTC CTAACTTCCC TAGCTTCCAT 55246 .......... .......... .......... .......... .......... .......... 93 ACAGCCTGCT TTTCTCTCAA ACCCTCCAAA TCAGTCTTCA TCCCGACCCC TTCCATAAAG 55186 .......... .......... .......... .......... .......... .......... 93 AGAGTAACTT AAGTCACAGC TGCTATTGCA CAGAGCTTAG AATCAAACAC AATACTTGTT 55126 .......... .......... .......... .......... .......... .......... 93 TACTGATTGT TATCATTTCT TACTCCTTTC CCCTTTCTAA GAAAATTTTA TATGTTTCTC 55066 .......... .......... .......... .......... .......... .......... 93 TTGATGTTCC TCTTTCCAAT TTCCAGATTA TGCATAGTTT AGAAGCTAAA GTTAGCAGCA 55006 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......ATTA TGCATAGTTT AGAAGCTAAA GTTAGCAGCA 127 AAGAGGAGAA TGTGACAGCT CCTGATGACG GAAGCAATGA GCTGAAAAGG TCCATTTATG 54946 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGAGGAGAA TGTGACAGCT CCTGATGACG GAAGCAATGA GCTGAAAAG. .......... 176 ACTCAATTTG AGTGATATCT CTTTTTATTT CTTATATCGA GCTTAATGAT TAAAAATTAT 54886 .......... .......... .......... .......... .......... .......... 176 CATGAAGGAA ATGCTACCAG CTAAGAAGAC TTGGACATTT CTAGCTCTTA ATGAATTCAA 54826 .......... .......... .......... .......... .......... .......... 176 TTTTTAGACT CAAAATGAGT GATATTAAAT GGAAAAGTTT GTTATTTTCT AACTCTCAAT 54766 .......... .......... .......... .......... .......... .......... 176 GAATTCAATC TATGACTCTA AATGAGTGAT ATTAAATGAG TTTGAAAGGC CTATTCATCA 54706 .......... .......... .......... .......... .......... .......... 176 TTTGAATCAA CAGACATTTC TTTTTATCTC TTCTTTGAGC TTTTTAGTGT TGAAATGATA 54646 .......... .......... .......... .......... .......... .......... 176 ATGAATAGGA AATGCTACTA CTTGAAAAGA TTTGCACAAA TCTAGAGAAT TAGAAAAGTT 54586 .......... .......... .......... .......... .......... .......... 176 TGGTGTTCTC AAACTCTTTT TATTACGTAA TTCTCTTAAA TTGATGCATC TTGAGATGTC 54526 .......... .......... .......... .......... .......... .......... 176 TGCTTTATTC TGCTTGGGTT TCAACTTAGA GGTATGTTAA GCACTTTTAC TTTGCCTTTC 54466 .......... .......... .......... .......... .......... .......... 176 TAGTAGGGCT CTGATTAAAA TTCTTACATA TTCTGGTTGG TAGACTCATA GGTCAGATAT 54406 .......... .......... .......... .......... .......... .......... 176 CATCTTTCTG ATGATTTATC GTTGCAATAC GTTGTTTATA TGCCACAACT TCCCCTGTTG 54346 .......... .......... .......... .......... .......... .......... 176 ATTGCTTTAT TATTGAACTT TAACTTCCTC CCTGTATCCA CTTCTTCTAC TTTTTGTTTG 54286 .......... .......... .......... .......... .......... .......... 176 CTTCACATGT GCCAGCCTGG GCAGTAAATA TGCAGAGGTA CTTCTTCTGT CCCAGTTGTG 54226 .......... .......... .......... .......... .......... .......... 176 AAGGAGTTTG GAGTACTTGG GTCAAAACAC TTAATTTTTA CTATGAATAA ACTATACATA 54166 .......... .......... .......... .......... .......... .......... 176 TTTGAAAACT ATCCCTCATT TATGGGATTT CACTGGGTAT AATGTTGTAA AAACTTTATG 54106 .......... .......... .......... .......... .......... .......... 176 ACATACTACA AGTCAAATGT CAACATCTAA TGATTCAAAA TATTTTTAAA TATTTTTAAG 54046 .......... .......... .......... .......... .......... .......... 176 AATAGTCAAA GAAAAAACTG TTTTACTCCC CAAACCGTAA CACCTTTACA TAAAATGGGA 53986 .......... .......... .......... .......... .......... .......... 176 CTGAGAGAAT ACTTCTTGTG ATAAGCTTTT TCAAGTGACA TCAGGAAAAA CAATTAACTG 53926 .......... .......... .......... .......... .......... .......... 176 TCTGGAGACT GACGTTCTGC TTTATTTCTC TTTTTTGTTT TCACCTGTGT GGATGAAGCA 53866 || .......... .......... .......... .......... .......... ........CA 178 AAGGGGAGGG AGGTGATAAC AGCAAACTTG CACCAGATAC CACTACAGAA ATGGGGGATG 53806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGGAGGG AGGTGATAAC AGCAAACTTG CACCAGATAC CACTACAGAA ATGGGGGATG 238 CAAGCAGCCT TCCACCAGTA AAAGAAAATT CCTCTTTTGA GGCAGTTCCT CCTCAAAACC 53746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCAGCCT TCCACCAGTA AAAGAAAATT CCTCTTTTGA GGCAGTTCCT CCTCAAAACC 298 ACACTGGTCA ACTGAATGAG CAAAACACCC AGTATAAGGC CATAGAGAAG TGCAGTTCAC 53686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTGGTCA ACTGAATGAG CAAAACACCC AGTATAAGGC CATAGAGAAG TGCAGTTCAC 358 AGAGTTTAGA AGATTACAAC CAGTTACTCT ACAAATATTA CGAACTTGAG GATCAAAGGC 53626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTTAGA AGATTACAAC CAGTTACTCT ACAAATATTA CGAACTTGAG GATCAAAGGC 418 AAAAGATTTT GCAGCAACTT AACCAGTTTG GCATTTGGGG TGATCAAAAT TCTGGTTCTG 53566 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| AAAAGATTTT GCAGCAACTT AACCAGTTTG GCATCTGGGG TGATCAAAAT TCTGGTTCTG 478 CTTCTCAAGA ACATCAAGCT TATGCATCAC ATAATTTAAA TCCAACAGAG TCTTCTTTCT 53506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTCAAGA ACATCAAGCT TATGCATCAC ATAATTTAAA TCCAACAGAG TCTTCTTTCT 538 ACTGCCCATA TGGATGCCAA AGTTGGGTAT CTCCTTGCAC TGCATCACCT TGTTGTTTGG 53446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCCCATA TGGATGCCAA AGTTGGGTAT CTCCTTGCAC TGCATCACCT TGTTGTTTGG 598 GTGTAAATGA GGATGACAAA CCATGCGATG CGTCTATACG ATGTGTTCAA GAAAAAAAAT 53386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTAAATGA GGATGACAAA CCATGCGATG CGTCTATACG ATGTGTTCAA GAAAAAAAAT 658 CATCTCCTCA AAACCCTAGT TTGGTTGATA CAGCAAAAGA AGCTGCAGAA AAAGCACTCT 53326 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CATCTCCTCA AAACCCTAGT TTGGTTGATA CAGCAAAGGA AGCTGCAGAA AAAGCACTCT 718 CCTCTTTAAA GCAAGCTTCT AACACGGCTT CACTGAATTC ATTTGCAAAG GAAGGTGAGC 53266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CCTCTTTAAA GCAAGCTTCT AACACGGCTT CACTGAATTC ATTTGCAAAG GAAG...... 772 AGCTCTCTTG ATGCTTTTGT GCATGACTGC TTCTTTTTAT GTCTAGGGTG TGATGTGGTA 53206 .......... .......... .......... .......... .......... .......... 772 GTAACTGGAA GATCCTTCAA TTTTCTATTA CATAATGAGG TGAAATGAAT ACGGACAAGA 53146 .......... .......... .......... .......... .......... .......... 772 AGAAGACAGA GGTGGAGAAG AGGGGGGGGG GGGGAGAGCA AGTTTTGACT TGATTGGTTA 53086 .......... .......... .......... .......... .......... .......... 772 TGGATTACAT GTGTGTTTGG TACAAAGGAT TTTCCAATTT CCCATGTTTG GTTGGTCAAA 53026 .......... .......... .......... .......... .......... .......... 772 TATTTTGGAA AACGTTCTCT AGAAAAACGA ACTCCTTGAA ATCAGGAAAA TGACTTGCCT 52966 .......... .......... .......... .......... .......... .......... 772 AATGAAGTAG GGAAAACAAG TTTCAATAGT GACATTCCAC ATTAATTGTG TCCTCCCACC 52906 .......... .......... .......... .......... .......... .......... 772 TTCCAACACA TCTCATCTTT ACCCCCACAC CCCTTCCTCC CCGCCCTCAC CTACCATAAT 52846 .......... .......... .......... .......... .......... .......... 772 ATTTGTCTAA ATTATATACA ATTGCTTTTA GGATAATATT TGCTTACCTA CCGAACACGA 52786 .......... .......... .......... .......... .......... .......... 772 AAAATTAAGT AGGAAACCCA CTTATTTTCC TGTGGAACAT TTTTCAAGAA AATATTTCCG 52726 .......... .......... .......... .......... .......... .......... 772 TGGAAAACAC TTCCCTTCAT ACCGAAAACA CCCTACAAAT GAAGTCAGTA TCTCTGGGTA 52666 .......... .......... .......... .......... .......... .......... 772 GCAGGGCAAT CGAGTAATCT TAGTCCATTG ATTCTAGGTC CTGCTATACT GAATGCATGT 52606 .......... .......... .......... .......... .......... .......... 772 TGATGACTTA CTGCTAGGAG CACTAGCATC ATATAATACA ATAAGGATCT CAAATGTGCT 52546 .......... .......... .......... .......... .......... .......... 772 ACAGAAATTC AAAGAACAAC TTAAAAATCC AATATAATGT GAGAAAGAAC TTTAATCTTT 52486 .......... .......... .......... .......... .......... .......... 772 CAAATGTCCT ATTCCTTTAA TTACTTTGTT TTTACTCTTT CTAATTTCAG GAAAACAAAT 52426 |||||||||| .......... .......... .......... .......... .......... GAAAACAAAT 782 AGAGATGATG AACCCTGTTG CTGCAGAGAA AACTGGCGGC TTGGAGACGG ATCTATCGGA 52366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATGATG AACCCTGTTG CTGCAGAGAA AACTGGCGGC TTGGAGACGG ATCTATCGGA 842 AGTGCTAAAT GCATGGTATT CTGCGGGCCT TTACACTGGA AAGTAAGTTT ATGTGAAGTT 52306 |||||||||| |||||||||| |||||||||| |||||||||| || AGTGCTAAAT GCATGGTATT CTGCGGGCCT TTACACTGGA AA........ .......... 884 CGATTCTTCA ATGGATGATA TGATATGCCC CAGTGTACCT TTATGTGGAA ACTGTTGCTT 52246 .......... .......... .......... .......... .......... .......... 884 AACACCAAAC TCTTGCAAAT ATGGTAAATT TGTAAAAAAT TGAAAGCAAG CTGTTTCAGA 52186 .......... .......... .......... .......... .......... .......... 884 ATCAGACCAT GCAAATATTT GCTCGTAAAC ATAATTTTCT GGTTGAATTT TAAAAAGGAT 52126 .......... .......... .......... .......... .......... .......... 884 CCATATCACC TCTTCAGTTT AGTGACTTTA CTCTATAAAG GTTAGCTACA TGAAGTTCTC 52066 .......... .......... .......... .......... .......... .......... 884 TTGCTGTCCC ATAGAGAAAA AAAGGGCTGC TGATATTTTC TCATAAGCTG CTTGAGAATT 52006 .......... .......... .......... .......... .......... .......... 884 AGTGGGTATG GTACTCCCTT AGTTGGTAGG AGGTAGCAGG TGTGAAATAG TCAAGGTGCG 51946 .......... .......... .......... .......... .......... .......... 884 CCCAAGGTCG TCCAAACAAC ATCGTTGTCG AAACAAAGAT AAAGTCTTCA CTTGATGGAA 51886 .......... .......... .......... .......... .......... .......... 884 CCTTTAAAGG CATCAGTGTA AGAACTCGAG GTGTGGGTCA AAGGGAAACG ACAGTCAAGG 51826 .......... .......... .......... .......... .......... .......... 884 GTATGGTTCT AAAGTCTTGC AATACTTGTA TCTTTTCTGT TGTGAGTATT TGAAGTGCTC 51766 .......... .......... .......... .......... .......... .......... 884 TCATAGAAGG ATTTGGGTTA ATATTCATTA GAAGATGACC TGTCTTAGGG TGTTGTTCGG 51706 .......... .......... .......... .......... .......... .......... 884 TGCAGAGGTT TTCCAATTTT CCCTCTTTCG GTTGGTCAAA AATTTTGAAA AATATTTTCT 51646 .......... .......... .......... .......... .......... .......... 884 TTACGAAAGT AAGTTCCTTA AAAATAAGGC AAAAATGACT TGCCTAACGT AATTAATGTA 51586 .......... .......... .......... .......... .......... .......... 884 ATCAAGTTTC ACAAATGGTA TTGAAATAAG GCCACCTTTT GATTGCAGCC AAGGCAAGAA 51526 .......... .......... .......... .......... .......... .......... 884 TGCCACGAAT GGTGTTTAGC AACCTGAAGC AAATGTTTTC CCTATCTCTA AAGGGGGCCC 51466 .......... .......... .......... .......... .......... .......... 884 TTGGGCCACC TCCAACACAA CTCATCTTCC CCGCTATTCC CATAACCTCA TCCGCACACC 51406 .......... .......... .......... .......... .......... .......... 884 CGTACCTACA CCCCAACCTT CCATAGTATT TGTTTAGACT ATATACAACT GTTTTTACTT 51346 .......... .......... .......... .......... .......... .......... 884 TTTAGGGTAA TGTATTTGCT TACATATCGA ACACAAGAAA ATAAGATGCC CACTTATTTT 51286 .......... .......... .......... .......... .......... .......... 884 TCTAGAAAAT TTTTTCCATG AGTGTTTCCG TTTTAATTAG ATTTGTAGCT CAACCCCTGA 51226 .......... .......... .......... .......... .......... .......... 884 AATATTTGAA TGTGATGCAG GTATCTTTCA GAGCAATCCA AGAAGAGAGA TGGTTAGCGT 51166 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTATCTTTCA GAGCAATCCA AGAAGAGAGA TGGTTAGCGT 924 CGTACTGATT CAGTTGGAAC TTAAATGTGG TGTTGTCGAT ACGACAAGAG GAAAAATTCA 51106 ||||||||| |||||||||| |||||||| ||||||| || ||||| | || |||||||||| TGTACTGATT CAGTTGGAAC ACAAATGTGG TGTTGTCAAT ACGAC-ACAG GAAAAATTCA 983 TTGTACTAAT GTTTGTGCAC TAGAATTCAA AGCTGTGATG TAAAACTAGA ---TGTTGTA 51049 ||||| |||| ||||||| || |||||||||| |||||||||| |||||||||| ||||||| TTGTATTAAT GTTTGTGAAC TAGAATTCAA AGCTGTGATG TAAAACTAGA TGTTGTTGTA 1043 CAGCATTTCT GGTAGGTTGA TTTTTCCAAA TATTGACAAT ACAGTTGTTT TTTCCCCTTT 50989 |||||||||| |||||||||| |||||||||| ||||||||| ||| CAGCATTTCT GGTAGGTTGA TTTTTCCAAA TATTGACAAA ACA....... .......... 1086 TTTGGGGGTG GGGTGGGGGT TCAAGTGTTG AGCTTCAGTT TTTTTCTTTC ACCCTCACTG 50929 .......... .......... .......... .......... .......... .......... 1086 TAGGCGTTTG CACATTAATT TGATGATGTG TGAAAAATGA GAGTAGTATT TGAAGTTAAA 50869 .......... .......... .......... .......... .......... .......... 1086 TTGAATAGTG CATTAGAAAA TTGAAGTTGT GTTTGAAACG TGCAATTTAC TTTAGATTTT 50809 .......... .......... .......... .......... .......... .......... 1086 ATGAAGTTTT GTGAGGGAAA TTAAATTATT TACTTGAAAA TGTGGTCCAG CAAGTTTTTC 50749 .......... .......... .......... .......... .......... .......... 1086 AAATTTAAAA AAATGAGCTT CAAGTTGGAA TGAAAAATTG ACTTATTATT GGACAAATTT 50689 .......... .......... .......... .......... .......... .......... 1086 TGTTCTATTA TTTTGGGAAA AGGAAAATGT TTTATTTGAA GTAGAAATTT TTGGGTTGAT 50629 .......... .......... .......... .......... .......... .......... 1086 TTACTCAAAT GTCCTTTTTT AAGTTTGTAA ATTTTGTTTT TATTTTGATA AGTTGTGTAT 50569 .......... .......... .......... .......... .......... .......... 1086 TTGGGAAATT ACCTTTCAGA CAAAAA 50543 | ||||| .......... .........A AAAAAA 1093 hqPGS_C08HBa0320P23.1-_SGN-U322164+ (56805 56713,55039 54957,53867 53272,52435 52324,51205 51006) ******************************************************************************** EST sequence 10 -strand 873 n (File: SGN-U327252-) 1 TAAGTCATTA CTAGAGAAAG CAATGTCATC CACGCAGAAG AAGGACAATA CCTGATGTCG 61 ACCTCCTTAT AAACATTGAA TGATCCGATT TACTTATTTG AAAACCGGCT CCTTCCTCTA 121 CTCCTATTTC GGCTCTTATA CATGCTGCTG TCACCTTTCA AACCAAGCTC TTGTGCCTGC 181 TTTAGCTTGC CGGAGGCCGT AACATAAATC GCTTTCTTGA GCTTGCATAC CAAGTTAGGA 241 TTCCTAGGAG AAGAGAAGCC TGGAGTTGGA GGAGGCTGAA TAGAAACTTA TTCTTGCCCC 301 CTTCCCTTAT GTTGTTGAAA GGCATTCTAT TCTGCACGTC AAATTGAAAT AAGGCCACCT 361 TTTGATTGCA GCCAAGGCAA GAATGCCACG AATGGTGTTT AGCAACCTGA AGCAAATGTT 421 TTCCCTATCT CTAAAGGGGG CCCTTGGGCC ACTTGACTGT AAGGAAAGGG GTTCGACTCA 481 ATATTCTTGA AGGAATCCTT TAGCTACTAA TCTAGCCTTG TATCTATCTA CCGAGCCATC 541 TGCTTTATGC TTGATCTTGT AAATCCACTT GCAGCCAATG GCTTCTTTCC CTGCAGGCAA 601 TGAGACTAAG TCTTATTATT TTTTTCCTGG GCATTGATTT CTTCCTGTAT AGCATCTCTC 661 CAGCAAGAAT GATTGGAGGC TTCAGCAAAT GATTCAGGTT CATGAGAAGA TTGAACTGAG 721 ATGAGGTAAG CTCGATCTTT TGTTTTGGGG AAAACGATTC ATAAGCCTTC AACAGGATAA 781 GAAACTTGAG AGGATCGACG AAGCTGAGAG CGGGATCCAG AATTTTAGGA AGCGACTGGA 841 AGGGAAGCAA CTGGGCTAGA CTGCTGATCT TCT Predicted gene structure (within gDNA segment 56196 to 46647): Exon 1 55391 55381 ( 11 n); cDNA 311 320 ( 10 n); score: 0.818 Intron 1 55380 52662 (2719 n); Pd: 0.226 (s: 0), Pa: 0.443 (s: 0) Exon 2 52661 52653 ( 9 n); cDNA 321 329 ( 9 n); score: 0.778 Intron 2 52652 51580 (1073 n); Pd: 0.781 (s: 0), Pa: 0.000 (s: 0.84) Exon 3 51579 51457 ( 123 n); cDNA 330 452 ( 123 n); score: 0.935 Intron 3 51456 51221 ( 236 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 4 51220 51206 ( 15 n); cDNA 453 467 ( 15 n); score: 0.667 Intron 4 51205 49274 (1932 n); Pd: 0.900 (s: 0), Pa: 0.974 (s: 0) Exon 5 49273 49251 ( 23 n); cDNA 468 488 ( 21 n); score: 0.652 MATCH C08HBa0320P23.1- SGN-U327252- 0.935 181 0.207 C PGS_C08HBa0320P23.1-_SGN-U327252- (55391 55381,52661 52653,51579 51457,51220 51206,49273 49251) Alignment (genomic DNA sequence = upper lines): GTTGAATGAA AGTATTGTGG CTCTCTTTTC TCCCCCTTTT CTGTTCCTTC TTTTTCACGA 55332 |||| |||| | GTTGT-TGAA A......... .......... .......... .......... .......... 320 TCATAATTCT TGACATCATT TTGATTCCAC TACTTCTCTG CATTGGCCAT GATCTTTTGT 55272 .......... .......... .......... .......... .......... .......... 320 CTCCTCCTAA CTTCCCTAGC TTCCATACAG CCTGCTTTTC TCTCAAACCC TCCAAATCAG 55212 .......... .......... .......... .......... .......... .......... 320 TCTTCATCCC GACCCCTTCC ATAAAGAGAG TAACTTAAGT CACAGCTGCT ATTGCACAGA 55152 .......... .......... .......... .......... .......... .......... 320 GCTTAGAATC AAACACAATA CTTGTTTACT GATTGTTATC ATTTCTTACT CCTTTCCCCT 55092 .......... .......... .......... .......... .......... .......... 320 TTCTAAGAAA ATTTTATATG TTTCTCTTGA TGTTCCTCTT TCCAATTTCC AGATTATGCA 55032 .......... .......... .......... .......... .......... .......... 320 TAGTTTAGAA GCTAAAGTTA GCAGCAAAGA GGAGAATGTG ACAGCTCCTG ATGACGGAAG 54972 .......... .......... .......... .......... .......... .......... 320 CAATGAGCTG AAAAGGTCCA TTTATGACTC AATTTGAGTG ATATCTCTTT TTATTTCTTA 54912 .......... .......... .......... .......... .......... .......... 320 TATCGAGCTT AATGATTAAA AATTATCATG AAGGAAATGC TACCAGCTAA GAAGACTTGG 54852 .......... .......... .......... .......... .......... .......... 320 ACATTTCTAG CTCTTAATGA ATTCAATTTT TAGACTCAAA ATGAGTGATA TTAAATGGAA 54792 .......... .......... .......... .......... .......... .......... 320 AAGTTTGTTA TTTTCTAACT CTCAATGAAT TCAATCTATG ACTCTAAATG AGTGATATTA 54732 .......... .......... .......... .......... .......... .......... 320 AATGAGTTTG AAAGGCCTAT TCATCATTTG AATCAACAGA CATTTCTTTT TATCTCTTCT 54672 .......... .......... .......... .......... .......... .......... 320 TTGAGCTTTT TAGTGTTGAA ATGATAATGA ATAGGAAATG CTACTACTTG AAAAGATTTG 54612 .......... .......... .......... .......... .......... .......... 320 CACAAATCTA GAGAATTAGA AAAGTTTGGT GTTCTCAAAC TCTTTTTATT ACGTAATTCT 54552 .......... .......... .......... .......... .......... .......... 320 CTTAAATTGA TGCATCTTGA GATGTCTGCT TTATTCTGCT TGGGTTTCAA CTTAGAGGTA 54492 .......... .......... .......... .......... .......... .......... 320 TGTTAAGCAC TTTTACTTTG CCTTTCTAGT AGGGCTCTGA TTAAAATTCT TACATATTCT 54432 .......... .......... .......... .......... .......... .......... 320 GGTTGGTAGA CTCATAGGTC AGATATCATC TTTCTGATGA TTTATCGTTG CAATACGTTG 54372 .......... .......... .......... .......... .......... .......... 320 TTTATATGCC ACAACTTCCC CTGTTGATTG CTTTATTATT GAACTTTAAC TTCCTCCCTG 54312 .......... .......... .......... .......... .......... .......... 320 TATCCACTTC TTCTACTTTT TGTTTGCTTC ACATGTGCCA GCCTGGGCAG TAAATATGCA 54252 .......... .......... .......... .......... .......... .......... 320 GAGGTACTTC TTCTGTCCCA GTTGTGAAGG AGTTTGGAGT ACTTGGGTCA AAACACTTAA 54192 .......... .......... .......... .......... .......... .......... 320 TTTTTACTAT GAATAAACTA TACATATTTG AAAACTATCC CTCATTTATG GGATTTCACT 54132 .......... .......... .......... .......... .......... .......... 320 GGGTATAATG TTGTAAAAAC TTTATGACAT ACTACAAGTC AAATGTCAAC ATCTAATGAT 54072 .......... .......... .......... .......... .......... .......... 320 TCAAAATATT TTTAAATATT TTTAAGAATA GTCAAAGAAA AAACTGTTTT ACTCCCCAAA 54012 .......... .......... .......... .......... .......... .......... 320 CCGTAACACC TTTACATAAA ATGGGACTGA GAGAATACTT CTTGTGATAA GCTTTTTCAA 53952 .......... .......... .......... .......... .......... .......... 320 GTGACATCAG GAAAAACAAT TAACTGTCTG GAGACTGACG TTCTGCTTTA TTTCTCTTTT 53892 .......... .......... .......... .......... .......... .......... 320 TTGTTTTCAC CTGTGTGGAT GAAGCAAAGG GGAGGGAGGT GATAACAGCA AACTTGCACC 53832 .......... .......... .......... .......... .......... .......... 320 AGATACCACT ACAGAAATGG GGGATGCAAG CAGCCTTCCA CCAGTAAAAG AAAATTCCTC 53772 .......... .......... .......... .......... .......... .......... 320 TTTTGAGGCA GTTCCTCCTC AAAACCACAC TGGTCAACTG AATGAGCAAA ACACCCAGTA 53712 .......... .......... .......... .......... .......... .......... 320 TAAGGCCATA GAGAAGTGCA GTTCACAGAG TTTAGAAGAT TACAACCAGT TACTCTACAA 53652 .......... .......... .......... .......... .......... .......... 320 ATATTACGAA CTTGAGGATC AAAGGCAAAA GATTTTGCAG CAACTTAACC AGTTTGGCAT 53592 .......... .......... .......... .......... .......... .......... 320 TTGGGGTGAT CAAAATTCTG GTTCTGCTTC TCAAGAACAT CAAGCTTATG CATCACATAA 53532 .......... .......... .......... .......... .......... .......... 320 TTTAAATCCA ACAGAGTCTT CTTTCTACTG CCCATATGGA TGCCAAAGTT GGGTATCTCC 53472 .......... .......... .......... .......... .......... .......... 320 TTGCACTGCA TCACCTTGTT GTTTGGGTGT AAATGAGGAT GACAAACCAT GCGATGCGTC 53412 .......... .......... .......... .......... .......... .......... 320 TATACGATGT GTTCAAGAAA AAAAATCATC TCCTCAAAAC CCTAGTTTGG TTGATACAGC 53352 .......... .......... .......... .......... .......... .......... 320 AAAAGAAGCT GCAGAAAAAG CACTCTCCTC TTTAAAGCAA GCTTCTAACA CGGCTTCACT 53292 .......... .......... .......... .......... .......... .......... 320 GAATTCATTT GCAAAGGAAG GTGAGCAGCT CTCTTGATGC TTTTGTGCAT GACTGCTTCT 53232 .......... .......... .......... .......... .......... .......... 320 TTTTATGTCT AGGGTGTGAT GTGGTAGTAA CTGGAAGATC CTTCAATTTT CTATTACATA 53172 .......... .......... .......... .......... .......... .......... 320 ATGAGGTGAA ATGAATACGG ACAAGAAGAA GACAGAGGTG GAGAAGAGGG GGGGGGGGGG 53112 .......... .......... .......... .......... .......... .......... 320 AGAGCAAGTT TTGACTTGAT TGGTTATGGA TTACATGTGT GTTTGGTACA AAGGATTTTC 53052 .......... .......... .......... .......... .......... .......... 320 CAATTTCCCA TGTTTGGTTG GTCAAATATT TTGGAAAACG TTCTCTAGAA AAACGAACTC 52992 .......... .......... .......... .......... .......... .......... 320 CTTGAAATCA GGAAAATGAC TTGCCTAATG AAGTAGGGAA AACAAGTTTC AATAGTGACA 52932 .......... .......... .......... .......... .......... .......... 320 TTCCACATTA ATTGTGTCCT CCCACCTTCC AACACATCTC ATCTTTACCC CCACACCCCT 52872 .......... .......... .......... .......... .......... .......... 320 TCCTCCCCGC CCTCACCTAC CATAATATTT GTCTAAATTA TATACAATTG CTTTTAGGAT 52812 .......... .......... .......... .......... .......... .......... 320 AATATTTGCT TACCTACCGA ACACGAAAAA TTAAGTAGGA AACCCACTTA TTTTCCTGTG 52752 .......... .......... .......... .......... .......... .......... 320 GAACATTTTT CAAGAAAATA TTTCCGTGGA AAACACTTCC CTTCATACCG AAAACACCCT 52692 .......... .......... .......... .......... .......... .......... 320 ACAAATGAAG TCAGTATCTC TGGGTAGCAG GGCAATCGAG TAATCTTAGT CCATTGATTC 52632 |||| || | .......... .......... .......... GGCATTCTA. .......... .......... 329 TAGGTCCTGC TATACTGAAT GCATGTTGAT GACTTACTGC TAGGAGCACT AGCATCATAT 52572 .......... .......... .......... .......... .......... .......... 329 AATACAATAA GGATCTCAAA TGTGCTACAG AAATTCAAAG AACAACTTAA AAATCCAATA 52512 .......... .......... .......... .......... .......... .......... 329 TAATGTGAGA AAGAACTTTA ATCTTTCAAA TGTCCTATTC CTTTAATTAC TTTGTTTTTA 52452 .......... .......... .......... .......... .......... .......... 329 CTCTTTCTAA TTTCAGGAAA ACAAATAGAG ATGATGAACC CTGTTGCTGC AGAGAAAACT 52392 .......... .......... .......... .......... .......... .......... 329 GGCGGCTTGG AGACGGATCT ATCGGAAGTG CTAAATGCAT GGTATTCTGC GGGCCTTTAC 52332 .......... .......... .......... .......... .......... .......... 329 ACTGGAAAGT AAGTTTATGT GAAGTTCGAT TCTTCAATGG ATGATATGAT ATGCCCCAGT 52272 .......... .......... .......... .......... .......... .......... 329 GTACCTTTAT GTGGAAACTG TTGCTTAACA CCAAACTCTT GCAAATATGG TAAATTTGTA 52212 .......... .......... .......... .......... .......... .......... 329 AAAAATTGAA AGCAAGCTGT TTCAGAATCA GACCATGCAA ATATTTGCTC GTAAACATAA 52152 .......... .......... .......... .......... .......... .......... 329 TTTTCTGGTT GAATTTTAAA AAGGATCCAT ATCACCTCTT CAGTTTAGTG ACTTTACTCT 52092 .......... .......... .......... .......... .......... .......... 329 ATAAAGGTTA GCTACATGAA GTTCTCTTGC TGTCCCATAG AGAAAAAAAG GGCTGCTGAT 52032 .......... .......... .......... .......... .......... .......... 329 ATTTTCTCAT AAGCTGCTTG AGAATTAGTG GGTATGGTAC TCCCTTAGTT GGTAGGAGGT 51972 .......... .......... .......... .......... .......... .......... 329 AGCAGGTGTG AAATAGTCAA GGTGCGCCCA AGGTCGTCCA AACAACATCG TTGTCGAAAC 51912 .......... .......... .......... .......... .......... .......... 329 AAAGATAAAG TCTTCACTTG ATGGAACCTT TAAAGGCATC AGTGTAAGAA CTCGAGGTGT 51852 .......... .......... .......... .......... .......... .......... 329 GGGTCAAAGG GAAACGACAG TCAAGGGTAT GGTTCTAAAG TCTTGCAATA CTTGTATCTT 51792 .......... .......... .......... .......... .......... .......... 329 TTCTGTTGTG AGTATTTGAA GTGCTCTCAT AGAAGGATTT GGGTTAATAT TCATTAGAAG 51732 .......... .......... .......... .......... .......... .......... 329 ATGACCTGTC TTAGGGTGTT GTTCGGTGCA GAGGTTTTCC AATTTTCCCT CTTTCGGTTG 51672 .......... .......... .......... .......... .......... .......... 329 GTCAAAAATT TTGAAAAATA TTTTCTTTAC GAAAGTAAGT TCCTTAAAAA TAAGGCAAAA 51612 .......... .......... .......... .......... .......... .......... 329 ATGACTTGCC TAACGTAATT AATGTAATCA AGTTTCACAA ATGGTATTGA AATAAGGCCA 51552 || || | ||||| |||||||||| .......... .......... .......... ..TTCTGCAC GTCAAATTGA AATAAGGCCA 357 CCTTTTGATT GCAGCCAAGG CAAGAATGCC ACGAATGGTG TTTAGCAACC TGAAGCAAAT 51492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTTGATT GCAGCCAAGG CAAGAATGCC ACGAATGGTG TTTAGCAACC TGAAGCAAAT 417 GTTTTCCCTA TCTCTAAAGG GGGCCCTTGG GCCACCTCCA ACACAACTCA TCTTCCCCGC 51432 |||||||||| |||||||||| |||||||||| ||||| GTTTTCCCTA TCTCTAAAGG GGGCCCTTGG GCCAC..... .......... .......... 452 TATTCCCATA ACCTCATCCG CACACCCGTA CCTACACCCC AACCTTCCAT AGTATTTGTT 51372 .......... .......... .......... .......... .......... .......... 452 TAGACTATAT ACAACTGTTT TTACTTTTTA GGGTAATGTA TTTGCTTACA TATCGAACAC 51312 .......... .......... .......... .......... .......... .......... 452 AAGAAAATAA GATGCCCACT TATTTTTCTA GAAAATTTTT TCCATGAGTG TTTCCGTTTT 51252 .......... .......... .......... .......... .......... .......... 452 AATTAGATTT GTAGCTCAAC CCCTGAAATA TTTGAATGTG ATGCAGGTAT CTTTCAGAGC 51192 |||| ||| | | | .......... .......... .......... .TTGACTGTA AGGAAA.... .......... 467 AATCCAAGAA GAGAGATGGT TAGCGTCGTA CTGATTCAGT TGGAACTTAA ATGTGGTGTT 51132 .......... .......... .......... .......... .......... .......... 467 GTCGATACGA CAAGAGGAAA AATTCATTGT ACTAATGTTT GTGCACTAGA ATTCAAAGCT 51072 .......... .......... .......... .......... .......... .......... 467 GTGATGTAAA ACTAGATGTT GTACAGCATT TCTGGTAGGT TGATTTTTCC AAATATTGAC 51012 .......... .......... .......... .......... .......... .......... 467 AATACAGTTG TTTTTTCCCC TTTTTTGGGG GTGGGGTGGG GGTTCAAGTG TTGAGCTTCA 50952 .......... .......... .......... .......... .......... .......... 467 GTTTTTTTCT TTCACCCTCA CTGTAGGCGT TTGCACATTA ATTTGATGAT GTGTGAAAAA 50892 .......... .......... .......... .......... .......... .......... 467 TGAGAGTAGT ATTTGAAGTT AAATTGAATA GTGCATTAGA AAATTGAAGT TGTGTTTGAA 50832 .......... .......... .......... .......... .......... .......... 467 ACGTGCAATT TACTTTAGAT TTTATGAAGT TTTGTGAGGG AAATTAAATT ATTTACTTGA 50772 .......... .......... .......... .......... .......... .......... 467 AAATGTGGTC CAGCAAGTTT TTCAAATTTA AAAAAATGAG CTTCAAGTTG GAATGAAAAA 50712 .......... .......... .......... .......... .......... .......... 467 TTGACTTATT ATTGGACAAA TTTTGTTCTA TTATTTTGGG AAAAGGAAAA TGTTTTATTT 50652 .......... .......... .......... .......... .......... .......... 467 GAAGTAGAAA TTTTTGGGTT GATTTACTCA AATGTCCTTT TTTAAGTTTG TAAATTTTGT 50592 .......... .......... .......... .......... .......... .......... 467 TTTTATTTTG ATAAGTTGTG TATTTGGGAA ATTACCTTTC AGACAAAAAT AGATAGAGGT 50532 .......... .......... .......... .......... .......... .......... 467 GTAATGTTTA AGCATATATT AACCAATGTT GCATACAAAA AAACTAGACT GTTGTTTAAT 50472 .......... .......... .......... .......... .......... .......... 467 GTTTGTAAAA ATTTACAAAT TTAAGTTTGT GATTTAACAT TTTCTCCTTA GACTTTGTTG 50412 .......... .......... .......... .......... .......... .......... 467 AAAGAGATCT TTTAAGTTAT GATTTAAAAG GTATAGACGT TACCAGAGAA TAAAAGAAAA 50352 .......... .......... .......... .......... .......... .......... 467 TTACTTTTCA ACACGAGAAG ATACAATCTT TTAACAACAG AGAACGATAC AATCTATCCA 50292 .......... .......... .......... .......... .......... .......... 467 AATATTGCAT TCATTAAAAA TACATTATGA TACAATAAAA TACAATATAA TATAATACAA 50232 .......... .......... .......... .......... .......... .......... 467 TACATTATGA AACAATACGT AACAATCATC GGAACAAAAT GTAATACAAG GGGCAAACGT 50172 .......... .......... .......... .......... .......... .......... 467 GCATTTTTCC CATGAGTTGG GCCAATTTCT AATAACCCAC ATTTATTTAA GCCCAATTAT 50112 .......... .......... .......... .......... .......... .......... 467 AAATAGAGGT TTATGTCTCT ATGCCTTTAA CCCTTCTCCT TGGTTGCTCT GTTCCAGCTG 50052 .......... .......... .......... .......... .......... .......... 467 TTTGCTGTTT GCTGTTTGAG GTCTCAACAC TCGCTTAATC TCAGCTAAAT ATAATTCAAA 49992 .......... .......... .......... .......... .......... .......... 467 GCTGTAAAGG AAACGAGAAA ACATCTAATT TAGGTATTTT TCTCCTCTTA ATCGTTGTTT 49932 .......... .......... .......... .......... .......... .......... 467 TTCAAAGCTT ATATGAGCTG GTTCTCTGTA GAAAAGTAAG TCTTTTTGAT GGGAGTTCGT 49872 .......... .......... .......... .......... .......... .......... 467 TATTTTCCCA GTTGGTTCTT CAACATGAGG TCTTTTTAAC CCTTTATTTA CTTCTTTCAT 49812 .......... .......... .......... .......... .......... .......... 467 CATGACATGA ACTGGGTCTC CGTAAAAATC GAGTCTTGAT GGAGTTTTAG TATTTTGCTT 49752 .......... .......... .......... .......... .......... .......... 467 GTTGTGAATT CCCTTAGTTT CTTAATTGGC TCCTGAACAT GAGGTTGTGT GATTTTTCTG 49692 .......... .......... .......... .......... .......... .......... 467 GGAAGTAATT GGTTTGTTTT TCAATCATCA TTGTGGATAG TTTAGCGAAA ATGGAGGAAG 49632 .......... .......... .......... .......... .......... .......... 467 AATTTAATGC TGGAAGGATC AAAGGCGCTG CTAAGAGGAC TTTGCAAATT ACACCTCTTG 49572 .......... .......... .......... .......... .......... .......... 467 ATGAGGAAGA TCAAGAAGAG GTTCAAATTG ATGACAGTGG AGATGTTGAT TCGTATGATG 49512 .......... .......... .......... .......... .......... .......... 467 ATGATGATGA GACGGAGGAG GAGGATGAAG ACAAGGAACC TGTGGGATTA GGGGTTCTTG 49452 .......... .......... .......... .......... .......... .......... 467 AAAAGCCTGA GAATTCATGG TCACTGCTAC GTGAGTTATT TCCAAGCAAA GCTGGGGGTA 49392 .......... .......... .......... .......... .......... .......... 467 CTCCGGTATG GTTAGAAAAG TTCTCTCGTT GAGTCGTTTC CGCTATCTTC CATATTCATT 49332 .......... .......... .......... .......... .......... .......... 467 AGGGTGAAAG ACGCCTCCAA GGTTGATTGA GTTTTAAATT TTGTTTCTGT GAATGTAGGC 49272 | .......... .......... .......... .......... .......... ........G- 468 TTGGTTGGAT CCAATAAACT T 49251 |||| || ||||| || | -GGGTTCGAC TCAATATTCT T 488 hqPGS_C08HBa0320P23.1-_SGN-U327252- (51579 51457) ******************************************************************************** EST sequence 7 +strand 2759 n (File: SGN-U315068+) 1 TTTGCCGACC TCTCTTTCCT ACCTTTTTCG CTGAAAAATA TTTAATTTTA TTTATTTTCT 61 TTCTTTTCGC CCAAGTAACT TACAATATTC AAAGTGTTGA ATTTTTCTCA CAAACTATAA 121 ATGTTATCTT TATTATTAAT TATAATAATA ATAATTTAGC TGATGAATTT CACAAGCTAT 181 TCAGTGAATT CCATCTCCGT ATCAACGCCG TCGTCTCGAG ATCTCCGTTG CTTTGTTTGA 241 TCGTTTGCTT CTCAGTTATC TCTGTATCCT TCGTTCTTTC TTCGAGACGA CGACAAAGAT 301 AAAGACGACG GCGTTTGATC TATGAAAGAG GAGGTGAATT AAATTAGCGC GTAAGTTACC 361 TTTGTACAAA GGGAAATTTG TTGACTTGAC ATCAACATTA TGGAGAGAAC GTGCTTCTAC 421 CGAGATGGCC ACTCATTGCA GAATTTGGTT TTGCATTTCG TTCTCCATGA TGCGGCTTCT 481 CAGAAATTTG TTATGACAGA CCTGTGCTAT ACTAGTTTAG GATTTAGTCT TTCTGTTAGA 541 AATTTGTAAA TAGTAGTTGC CTGTAGATAA ATGGAGTCAA ACTGGGTTGA AGTGTTAGAT 601 AATGACCGTA GGACAGCTGA CGTCGACTCA AAAAGTAAAG TAGCGTCTCA GTACGTGGCA 661 CGTATAGTTG GAGCTGGCAC TGAGAAGCTG GAGGAGCTAT CATTTCAACC AAATTGTAGC 721 TCATTTTATA GCACGCTTGG TAAGAGGAAG AGGACTGTGG AAGGTGAAAC TAATTGCAGA 781 TCACATCTCA GGAAATCGAC AGTTAAGAAC TACTCAAATT TCATTAAAAG TGGACTGCCA 841 CAACGTGTTT TATATCATCA GAATGGTGAA TGGAATGATT TCCCTCAAGA TATTGTTCGT 901 ATTGTCAAAG AAGATTTCCG TGCAAAGAAG GCTGTGATTG AGGTGAACTT TGGTGGCTTT 961 CATGTAATAC TTGATATTCT ATATATGGTT CAGGTAAATT TGGTTACCGG ATTGGAGAAA 1021 CCTATTGCCT GGATAGACGA AGCAGGTGGC TGTTTCTTCC CTGATTTATG TCTCGTTAGT 1081 TGTAAAGCGC ACGACAACAT TGAGATACAA TCGCAGAGAA CTGAAGGATT CAGTGCTGCT 1141 GAGCCAGATA GGGCTACTAA TATCAAGTTG CATCTTGAAA TAGATATTAA TGGACCGAAC 1201 AATTGCAAAT TGGATGAAGG TATGGAAGAG TCAAATGTCC GTGTTAAAAG GATTAAAGTC 1261 GATCCTTTAA AAGATAATCA ACAATTTGCT GTTGATCAAA AATCATATCC TAAAATGGAA 1321 GTAGTGGCAG AAAATCAACA GGATCAGGAA AGTCTGTCTC CTATATTAGA AGATACACTT 1381 AAGTTGGTGG ATGCAGAATC GGTTAAAACT ATGTTTGTTA AGGGAATGAA TACCATCTAT 1441 ATGGTGGATA TAGTCAAAAT TAGTCAATGC TCAAGTAAAT ATATGAGAAA TCGCTTGGAA 1501 CTGTTTGAGA AGCAGGCTGA GATAACTCAA AAGTATCGTG GGAAATCCAA TGTTCGGCAT 1561 GCTTGGCTTG CCGCTTCCAA AGAGGTAGTA TCTACAATTA TGAACTATGG GCTTATGCAT 1621 GGGGCCTGTG GACAGAAGAC TAAGCTTGGT GTTGGAGTGC ACCTCATTGC CCAGGACTGT 1681 GCCTCTAAAA GTGCCGCTAG CTGTGATATT GACGAAAATG GCATCCGTTA CATGGTTCTT 1741 TGTCGTGTCA TTTTGGGCAA TGAAGAACTT TTGCATTTTG GCTCTCATCA ATCTTATCCA 1801 AGCAATGAGA GATATGATAG TGGTGTTGAT GATCTCGAGA GTCCTACTCA CTATACTGTT 1861 TGGAACATGA ATATGAATAC ACACATATAT CCTGAATATG TCGTGAGCTT CAGGATGTCT 1921 TCAGGAGCAG AAGGGGCTCC AATAAAGGAA GAAAGTCGGC TTGATGTCTC CAGAGTTACT 1981 TCTCAGGGAT CTGAGGAGCG ATTGGACTTG AATAAATTGC CTACAGAATT GGGGAACTGT 2041 CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG GTGTTGGTGT GGGTACCAAT 2101 AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA 2161 GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG ACTTGTTCAG GAGCAAAAAA 2221 ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG TGGGTGATCA GTTATTGAAG 2281 TCTACCATAA CCAATCTCCA GTGTAAGCCG CCTTCCGCAT CTCCATGCTT TCTGAATGTG 2341 CCGAGTGGGG AGAGTAATTG TTGAGGCTGT ACCAGCAAGG GTGGATCGCT GCGTGGTGGC 2401 GAAGAGTCCA CTTTTACCAA TCAAGCGTCG TCCTCTTCTC TCTATCTCTC TTTGTTTTTG 2461 GTGTTATGTA GCTTTAGTTT CTTTGAACAT TTTGTGATTA TATGCAGTTA TGTCTAGACT 2521 TGCACCTTCT GTTCTTCTAT ATATGCGACT TCCAATTCTC TCACGTCTGT GATGGCAATA 2581 ATTGGTGCAC AGAAAAAAGT TACTGGAGCT TAAATTGGTT TTAGGTTGGC ATCTTGAAAG 2641 TGCTGCTAGT CGGTTTAATC ATGGTTTGAA GAGAATAAAA CTGTAGCAAA CATCGGTGGC 2701 GTTGTATTTT AACAAAAACT TAGGCATTGT ACTGTTATCA CTTTGAAGCT GAGGGGTGA Predicted gene structure (within gDNA segment 58887 to 69022): Exon 1 59622 59949 ( 328 n); cDNA 1 328 ( 328 n); score: 0.985 Intron 1 59950 61336 (1387 n); Pd: 0.997 (s: 0.98), Pa: 0.918 (s: 1.00) Exon 2 61337 61455 ( 119 n); cDNA 329 447 ( 119 n); score: 1.000 Intron 2 61456 61859 ( 404 n); Pd: 0.823 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 61860 63103 (1244 n); cDNA 448 1691 (1244 n); score: 1.000 Intron 3 63104 63555 ( 452 n); Pd: 0.970 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 4 63556 63797 ( 242 n); cDNA 1692 1933 ( 242 n); score: 1.000 Intron 4 63798 64974 (1177 n); Pd: 0.970 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 64975 65072 ( 98 n); cDNA 1934 2031 ( 98 n); score: 1.000 Intron 5 65073 66127 (1055 n); Pd: 0.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 6 66128 66307 ( 180 n); cDNA 2032 2211 ( 180 n); score: 1.000 Intron 6 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 7 66393 66488 ( 96 n); cDNA 2212 2307 ( 96 n); score: 1.000 Intron 7 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 8 67962 68412 ( 451 n); cDNA 2308 2759 ( 452 n); score: 0.986 MATCH C08HBa0320P23.1+ SGN-U315068+ 0.996 2758 1.000 C PGS_C08HBa0320P23.1+_SGN-U315068+ (59622 59949,61337 61455,61860 63103,63556 63797,64975 65072,66128 66307,66393 66488,67962 68412) Alignment (genomic DNA sequence = upper lines): TTTGCCGACC TCTCCTTCCT ACCTTTTTCG CTGAAAAATA TTTAATTTTA TTTATTTTCT 59681 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCGACC TCTCTTTCCT ACCTTTTTCG CTGAAAAATA TTTAATTTTA TTTATTTTCT 60 TTCTTTTCGC CCAAGTAACT TACAATATTC AAAGTGTTGA ATTTTTCTCA CAAACTATAA 59741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTCGC CCAAGTAACT TACAATATTC AAAGTGTTGA ATTTTTCTCA CAAACTATAA 120 ATGTTATCTT TATTATTAAT TATAATAATA ATAATTTAGC TGATGAATTT CACAAGCTAT 59801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTATCTT TATTATTAAT TATAATAATA ATAATTTAGC TGATGAATTT CACAAGCTAT 180 TCAGTGAATT CCATCTCCGT ATCAACGCCG TCGTCTCGAG ATCTCCGTTG CTTTGTTTGA 59861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGAATT CCATCTCCGT ATCAACGCCG TCGTCTCGAG ATCTCCGTTG CTTTGTTTGA 240 TCGTTTGTTT CTCAGTTATC CCTGTATCCT TTGTTCTTTC TCCGAGACGA CGACAAAGAT 59921 ||||||| || |||||||||| ||||||||| | |||||||| | |||||||| |||||||||| TCGTTTGCTT CTCAGTTATC TCTGTATCCT TCGTTCTTTC TTCGAGACGA CGACAAAGAT 300 AAAGACGACG GCGTTTGATC TATGAAAGGT ATATGTTAAA ACAGGGTAAA CAAGTTTTTT 59981 |||||||||| |||||||||| |||||||| AAAGACGACG GCGTTTGATC TATGAAAG.. .......... .......... .......... 328 TGTTTTTTTC TTTGGTTCAC TGCTTGGATC TGGACTGATT TGTATCGATT TGCGTTGTTT 60041 .......... .......... .......... .......... .......... .......... 328 TGGAAATGAT TTTACTAAAT ACGAAGTTTC CACGGTAGAT CGGCTCGGAA TTCATTTTTC 60101 .......... .......... .......... .......... .......... .......... 328 TGGATTTAAT TTGTAATAAA ATAAAATTTT CCGATTTTGT TTCTATTTAT GAGATTTTTT 60161 .......... .......... .......... .......... .......... .......... 328 TGATGTTTTT CTTGTTATAT AAATCATGAA AAATTGATTT TGCGGCGTCA TAAATTATTG 60221 .......... .......... .......... .......... .......... .......... 328 AAGTAGCAAG GTTGATTTTT TTTTTAATTT TCTAGCTAAG GAGAAGAAAA ATCGTTTTTT 60281 .......... .......... .......... .......... .......... .......... 328 TTTGAAGTTT TTTATCATTA CATAGATAAT GAAAATTATT TGAATATTGC TGGTTATTTT 60341 .......... .......... .......... .......... .......... .......... 328 CGGTGCGGTA TGATAAATTA TTGAAGTAGG AATTTTTTTA TTTATTTTCC AGTAAGTTTA 60401 .......... .......... .......... .......... .......... .......... 328 TTGAGGTTTT ATATAAACGA AGATAAGATT AAATTAAATA TTTTTACACT TGAGCGGAAT 60461 .......... .......... .......... .......... .......... .......... 328 ACTTGATTTG ATTATCAGTT CTTAATTAGA CATGCGGATT GTGTGTCCCA GTTGTTGAGA 60521 .......... .......... .......... .......... .......... .......... 328 AAACAATGAG AGGGATCTGA CTAATTAAAG GGGTACTTGA CCATATGGTG AATTTGCGCG 60581 .......... .......... .......... .......... .......... .......... 328 CATGTTTATA TTGAAGAATT GAAATATGAG AATAATGCTA ACTTTGTATA GCCATGAAAG 60641 .......... .......... .......... .......... .......... .......... 328 CTAGTTCGTA AATTGGCGAT ATCGGCACCT TGACATTTCC ACATGGTATT AAGTACATCC 60701 .......... .......... .......... .......... .......... .......... 328 TCAGTATCTT TCCAGTCAAG TAGGCGGCAT GTGAAGAAAT TAGCTGATTA GAATCTCTGT 60761 .......... .......... .......... .......... .......... .......... 328 CCCTCATAGT TCTACTCATA GTCTCTATCT TGGTGTTATC AATAGACAGG AGACTCCTAT 60821 .......... .......... .......... .......... .......... .......... 328 TTATACACTC AGCTAACGCT GTGCCAACTG CCTCTGAAAT ACAGAGGATA GGAGCGTTAT 60881 .......... .......... .......... .......... .......... .......... 328 CTTGAATGGT TAGGCGTGAG GCGCCAATAA TCAACAAGAA AGTTCTTACT GCCCAATTGT 60941 .......... .......... .......... .......... .......... .......... 328 ACACCCAATA ATTAACAAAA AAGTTCTTAC TGCCCAATTG TACACCCAAT AGAATAATAA 61001 .......... .......... .......... .......... .......... .......... 328 AAAAGTTGTA TGTATGTATG TATATATTTT GTGGGAGTTA CATGTTTGCT GATTATAAGT 61061 .......... .......... .......... .......... .......... .......... 328 TAATTCAAGA AGGTTTTAAA AACAAAAAGG TGTAAAACAC AAAAAGTTCA CATGGTTGTT 61121 .......... .......... .......... .......... .......... .......... 328 TCTCTGGTGT TTGTTCACGG TTGAATATTA GCTGAAGTTT TCAGAGCAAG TAAGAGATTT 61181 .......... .......... .......... .......... .......... .......... 328 AAGTGTAATG CTAATCTTTA TTTGTTTGCT AGAAAGATAG TGATAGACCT TAGTTCCTTT 61241 .......... .......... .......... .......... .......... .......... 328 TTTCTTTATT TATTTAATTT ATCTGGAAAT TTGGGTTTGG CATTTTTATG TGCATCTTTT 61301 .......... .......... .......... .......... .......... .......... 328 TGTCTTTCAA TGCTAACAAA AATTATGTTT TTCAGAGGAG GTGAATTAAA TTAGCGCGTA 61361 ||||| |||||||||| |||||||||| .......... .......... .......... .....AGGAG GTGAATTAAA TTAGCGCGTA 353 AGTTACCTTT GTACAAAGGG AAATTTGTTG ACTTGACATC AACATTATGG AGAGAACGTG 61421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACCTTT GTACAAAGGG AAATTTGTTG ACTTGACATC AACATTATGG AGAGAACGTG 413 CTTCTACCGA GATGGCCACT CATTGCAGAA TTTGGTAGGT TTTTATAGGC TAGCTACATT 61481 |||||||||| |||||||||| |||||||||| |||| CTTCTACCGA GATGGCCACT CATTGCAGAA TTTG...... .......... .......... 447 CCATAAGCAT CAGAACAATT TACTGATTTT ACGGAGAGAT TCACTCTTAC AGGAAGTAAA 61541 .......... .......... .......... .......... .......... .......... 447 TAAATTTGGC ACATAGTTAT ATGCATTTAG GCATGAAATT CACTTCTATT TCACAAGAGT 61601 .......... .......... .......... .......... .......... .......... 447 GCGAAAAATA TGCATTTAGG CATGAAATTC ACTTCTATTT CACAAGAGTG CGAAAAATAT 61661 .......... .......... .......... .......... .......... .......... 447 TTCCTTTTGT TTCGCACACC AAAAAACATG AAATTTACTT CTATTGCTGG ATTCAGTTCA 61721 .......... .......... .......... .......... .......... .......... 447 GTTAGTGTTA GTTTACCTTA GCTATGTAAC TTTTAACTAT GACATGTTCT TTTATGCGAG 61781 .......... .......... .......... .......... .......... .......... 447 TATCGTTCTG CTCATATGAA GAAATCCTTA TCCATTTTTT TCGAATGAAT GACTTTCTAA 61841 .......... .......... .......... .......... .......... .......... 447 ATGTCTTTCT CCTGCCAGGT TTTGCATTTC GTTCTCCATG ATGCGGCTTC TCAGAAATTT 61901 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT TTTGCATTTC GTTCTCCATG ATGCGGCTTC TCAGAAATTT 489 GTTATGACAG ACCTGTGCTA TACTAGTTTA GGATTTAGTC TTTCTGTTAG AAATTTGTAA 61961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATGACAG ACCTGTGCTA TACTAGTTTA GGATTTAGTC TTTCTGTTAG AAATTTGTAA 549 ATAGTAGTTG CCTGTAGATA AATGGAGTCA AACTGGGTTG AAGTGTTAGA TAATGACCGT 62021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTAGTTG CCTGTAGATA AATGGAGTCA AACTGGGTTG AAGTGTTAGA TAATGACCGT 609 AGGACAGCTG ACGTCGACTC AAAAAGTAAA GTAGCGTCTC AGTACGTGGC ACGTATAGTT 62081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACAGCTG ACGTCGACTC AAAAAGTAAA GTAGCGTCTC AGTACGTGGC ACGTATAGTT 669 GGAGCTGGCA CTGAGAAGCT GGAGGAGCTA TCATTTCAAC CAAATTGTAG CTCATTTTAT 62141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCTGGCA CTGAGAAGCT GGAGGAGCTA TCATTTCAAC CAAATTGTAG CTCATTTTAT 729 AGCACGCTTG GTAAGAGGAA GAGGACTGTG GAAGGTGAAA CTAATTGCAG ATCACATCTC 62201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACGCTTG GTAAGAGGAA GAGGACTGTG GAAGGTGAAA CTAATTGCAG ATCACATCTC 789 AGGAAATCGA CAGTTAAGAA CTACTCAAAT TTCATTAAAA GTGGACTGCC ACAACGTGTT 62261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAATCGA CAGTTAAGAA CTACTCAAAT TTCATTAAAA GTGGACTGCC ACAACGTGTT 849 TTATATCATC AGAATGGTGA ATGGAATGAT TTCCCTCAAG ATATTGTTCG TATTGTCAAA 62321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATATCATC AGAATGGTGA ATGGAATGAT TTCCCTCAAG ATATTGTTCG TATTGTCAAA 909 GAAGATTTCC GTGCAAAGAA GGCTGTGATT GAGGTGAACT TTGGTGGCTT TCATGTAATA 62381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATTTCC GTGCAAAGAA GGCTGTGATT GAGGTGAACT TTGGTGGCTT TCATGTAATA 969 CTTGATATTC TATATATGGT TCAGGTAAAT TTGGTTACCG GATTGGAGAA ACCTATTGCC 62441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGATATTC TATATATGGT TCAGGTAAAT TTGGTTACCG GATTGGAGAA ACCTATTGCC 1029 TGGATAGACG AAGCAGGTGG CTGTTTCTTC CCTGATTTAT GTCTCGTTAG TTGTAAAGCG 62501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATAGACG AAGCAGGTGG CTGTTTCTTC CCTGATTTAT GTCTCGTTAG TTGTAAAGCG 1089 CACGACAACA TTGAGATACA ATCGCAGAGA ACTGAAGGAT TCAGTGCTGC TGAGCCAGAT 62561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGACAACA TTGAGATACA ATCGCAGAGA ACTGAAGGAT TCAGTGCTGC TGAGCCAGAT 1149 AGGGCTACTA ATATCAAGTT GCATCTTGAA ATAGATATTA ATGGACCGAA CAATTGCAAA 62621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCTACTA ATATCAAGTT GCATCTTGAA ATAGATATTA ATGGACCGAA CAATTGCAAA 1209 TTGGATGAAG GTATGGAAGA GTCAAATGTC CGTGTTAAAA GGATTAAAGT CGATCCTTTA 62681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATGAAG GTATGGAAGA GTCAAATGTC CGTGTTAAAA GGATTAAAGT CGATCCTTTA 1269 AAAGATAATC AACAATTTGC TGTTGATCAA AAATCATATC CTAAAATGGA AGTAGTGGCA 62741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATAATC AACAATTTGC TGTTGATCAA AAATCATATC CTAAAATGGA AGTAGTGGCA 1329 GAAAATCAAC AGGATCAGGA AAGTCTGTCT CCTATATTAG AAGATACACT TAAGTTGGTG 62801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATCAAC AGGATCAGGA AAGTCTGTCT CCTATATTAG AAGATACACT TAAGTTGGTG 1389 GATGCAGAAT CGGTTAAAAC TATGTTTGTT AAGGGAATGA ATACCATCTA TATGGTGGAT 62861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAGAAT CGGTTAAAAC TATGTTTGTT AAGGGAATGA ATACCATCTA TATGGTGGAT 1449 ATAGTCAAAA TTAGTCAATG CTCAAGTAAA TATATGAGAA ATCGCTTGGA ACTGTTTGAG 62921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTCAAAA TTAGTCAATG CTCAAGTAAA TATATGAGAA ATCGCTTGGA ACTGTTTGAG 1509 AAGCAGGCTG AGATAACTCA AAAGTATCGT GGGAAATCCA ATGTTCGGCA TGCTTGGCTT 62981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGGCTG AGATAACTCA AAAGTATCGT GGGAAATCCA ATGTTCGGCA TGCTTGGCTT 1569 GCCGCTTCCA AAGAGGTAGT ATCTACAATT ATGAACTATG GGCTTATGCA TGGGGCCTGT 63041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCTTCCA AAGAGGTAGT ATCTACAATT ATGAACTATG GGCTTATGCA TGGGGCCTGT 1629 GGACAGAAGA CTAAGCTTGG TGTTGGAGTG CACCTCATTG CCCAGGACTG TGCCTCTAAA 63101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACAGAAGA CTAAGCTTGG TGTTGGAGTG CACCTCATTG CCCAGGACTG TGCCTCTAAA 1689 AGGTTGGGTA ATACTTTGTA ATGAGAAATC ATTTTTATTG ATGATCTCAT TATTGTTTGG 63161 || AG........ .......... .......... .......... .......... .......... 1691 AGTTCCAATA TCATGATCTA GAATGGGTTT TAAATTTATC CAGTTGCTTA GTGGAGATCA 63221 .......... .......... .......... .......... .......... .......... 1691 TTGATCATTG TGATGATGCA GTTCAAATAT TTTTACTGTG CTCCTCCTAT AACTGCGGGT 63281 .......... .......... .......... .......... .......... .......... 1691 GGGGGTGGGG GTGGGGTCAG GAAATAAAAA GGGGAAAGAA TATCTTAAAA GTACACAATG 63341 .......... .......... .......... .......... .......... .......... 1691 CTGTGTTCTG AACACATTTG GTTGTGGTTA TGATATCATC TCCTGATATT TAATGAAAAC 63401 .......... .......... .......... .......... .......... .......... 1691 ATCCCCCCTC CCCCTTAAAA AAAATAGAAA AAATGAAAGA AACAATAATT TTGTCAAAAC 63461 .......... .......... .......... .......... .......... .......... 1691 AAAAATAAAA ATTATAATTG TCCTCTGTAT TCCACTGATC TTATCTTTCA GGAGGATCTA 63521 .......... .......... .......... .......... .......... .......... 1691 ACTTCAGTTT CACTTTTTTT TGTCTCTTCA TCAGTGCCGC TAGCTGTGAT ATTGACGAAA 63581 |||||| |||||||||| |||||||||| .......... .......... .......... ....TGCCGC TAGCTGTGAT ATTGACGAAA 1717 ATGGCATCCG TTACATGGTT CTTTGTCGTG TCATTTTGGG CAATGAAGAA CTTTTGCATT 63641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCATCCG TTACATGGTT CTTTGTCGTG TCATTTTGGG CAATGAAGAA CTTTTGCATT 1777 TTGGCTCTCA TCAATCTTAT CCAAGCAATG AGAGATATGA TAGTGGTGTT GATGATCTCG 63701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTCTCA TCAATCTTAT CCAAGCAATG AGAGATATGA TAGTGGTGTT GATGATCTCG 1837 AGAGTCCTAC TCACTATACT GTTTGGAACA TGAATATGAA TACACACATA TATCCTGAAT 63761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTCCTAC TCACTATACT GTTTGGAACA TGAATATGAA TACACACATA TATCCTGAAT 1897 ATGTCGTGAG CTTCAGGATG TCTTCAGGAG CAGAAGGTGT CTTATTTATC TCGTTTTCCT 63821 |||||||||| |||||||||| |||||||||| |||||| ATGTCGTGAG CTTCAGGATG TCTTCAGGAG CAGAAG.... .......... .......... 1933 TACATTTAAA TGTCAGAATA TCATGATTAG TATGAAATTA AATAGTGTGT TGATTACCCT 63881 .......... .......... .......... .......... .......... .......... 1933 GAGTATGTCT CATCTTCCCT TAAAGAGAAA CTGCAGCATT TCCTCTTTGC TATTTTTAAT 63941 .......... .......... .......... .......... .......... .......... 1933 ATTGCAGTAC TTTAGACTTC CAAAGTAAAA GAGTATTTAG TTCACGTTTT ATCTCTGAAA 64001 .......... .......... .......... .......... .......... .......... 1933 TCAGTCAAAT ATTATCTGTT AATTCTACAT CCTTAAAAAT ACAATTACTA TTTTTGATCA 64061 .......... .......... .......... .......... .......... .......... 1933 ACTAACACAA GAATTTGGAT GTGCACCGCT TTGGAGATCA TGTCATGTGT TACTACTTCT 64121 .......... .......... .......... .......... .......... .......... 1933 CCTACTATTT AAAGATGGGA TTTTGGGATA TTTGCTGCTA GAGAAAAGTT TTGAACACAG 64181 .......... .......... .......... .......... .......... .......... 1933 AAGTTGGCTC TGGTTTTGAA TACTTGTAAT GATTATTATG ACGTGCAAGA CTATTGTTTT 64241 .......... .......... .......... .......... .......... .......... 1933 GTATTTGTGA AGTAAATAGC TTTGTAACTT TCTTAAAAAT TTCAGGTTGT GTTGTCACTT 64301 .......... .......... .......... .......... .......... .......... 1933 TCCGCACAAT TAATGTTGAG GATTCGGGTC ACTGTGACAA TGACACGTTT CTTAGCCTCG 64361 .......... .......... .......... .......... .......... .......... 1933 TTATGTGATT GTTCTATTTC TAGTGCCTCA CATTGAAGGA TCTTGATCTA AACTATTTAT 64421 .......... .......... .......... .......... .......... .......... 1933 GAACCGAGGG TCATCATTAT TATATTTTGT TTGACTTCCT TTTTTAGATT TTCAAAATGT 64481 .......... .......... .......... .......... .......... .......... 1933 AATCGCAACT GCTGAAGGCA GCATTTAATG GAACATTGCT TGGAATCCGT AGATTAATTT 64541 .......... .......... .......... .......... .......... .......... 1933 GTTTGGCGTC TTCTTTAGAT AATTGGGCTT GATAGTCCAC TGTTAAGAAG TTTGTGGGAC 64601 .......... .......... .......... .......... .......... .......... 1933 TTTGGCGTAC ATTGTTGATA TTTTTTGGGC TTTTGGAGGA CATTAAGCAC GATGGCACTA 64661 .......... .......... .......... .......... .......... .......... 1933 GCTATTTAGT TGCAGGATGA CTTTTTTTTT TTTTATACAT AGGGACTTTC ATATCATTAT 64721 .......... .......... .......... .......... .......... .......... 1933 GGAGAATGTT CTAGAGTAAG ACTAACTTAC CAATGATTAA AAGAGGGAAA CTTGCAATCA 64781 .......... .......... .......... .......... .......... .......... 1933 TAATACACTG CTCAAAGGTA TTTTTGATGT AGAGAGATAA AGGTGTTCCA CCTATTTAGA 64841 .......... .......... .......... .......... .......... .......... 1933 GCATGACGTA TTGATTTATT TATCCAAGGC GTAAAAAGAA CATTTATGCC GATTTAATGT 64901 .......... .......... .......... .......... .......... .......... 1933 GCCATTCAGT AATTGTACTT CTCAAATTAC TTAATTACCA CTCACTGATG GTTAGTTTGT 64961 .......... .......... .......... .......... .......... .......... 1933 ATTTTATTTC CAGGGGCTCC AATAAAGGAA GAAAGTCGGC TTGATGTCTC CAGAGTTACT 65021 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGGCTCC AATAAAGGAA GAAAGTCGGC TTGATGTCTC CAGAGTTACT 1980 TCTCAGGGAT CTGAGGAGCG ATTGGACTTG AATAAATTGC CTACAGAATT GGTAATCCCT 65081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TCTCAGGGAT CTGAGGAGCG ATTGGACTTG AATAAATTGC CTACAGAATT G......... 2031 CACTCCACCC GATTCCCCGC CCCGAAAAAA AGAACAGCAA GCATTAAAAA TTAAGTAAAT 65141 .......... .......... .......... .......... .......... .......... 2031 ATGATTGGTC TTTGTTGTTG TTTTGCTAAT ATGATTAAGG TTAGTAAAAA AAGTTTTGAG 65201 .......... .......... .......... .......... .......... .......... 2031 GGGAAGGTAA CTAACGTGAG TTCTATTTTC CTTACTACAT CTATATGGGG CAACATGAAG 65261 .......... .......... .......... .......... .......... .......... 2031 TGCATCTCTT GGCACAAGTT GATTGCTCCA GTGGGTACCT TCTGTGCGCT CGTCTTCAGA 65321 .......... .......... .......... .......... .......... .......... 2031 AAACTGAACT TTGACTTGAA ATAGTATTCT TTGCTGCGGG TGCACAAGAA TTTGCAATAT 65381 .......... .......... .......... .......... .......... .......... 2031 GAGGTTTGAA GGCTTTGTAT CAGCACATAT TTTTGTCTAT ATATGAATTT TCATTCATTG 65441 .......... .......... .......... .......... .......... .......... 2031 ACAGTCCTTG GCGAACTTGT AAGAGGTGGA TAAAGTTAGC TTCTCAGAGG ATGTGTGAAT 65501 .......... .......... .......... .......... .......... .......... 2031 TCTATAATTT TGATCATTTT GAAAGCAGAA CTGTTCTGAT GTTGAGCATT GTTGCACTTG 65561 .......... .......... .......... .......... .......... .......... 2031 ATCTCCTCGC TTACGGTAAT CTTACTGTTG GAAGAAAGAG AATGATCTCT TCTTTTAGTT 65621 .......... .......... .......... .......... .......... .......... 2031 GATTCTTCCG AGTCTGAGCA AAGGGTGTGT TTAGTTTCTG TTGAGGAACT GTTCTCAAGT 65681 .......... .......... .......... .......... .......... .......... 2031 TTTAGCTAAA GGAGCATTCA GTATGATGAT ATCTTGACAC CATAGGAAGC AAACTAGGTG 65741 .......... .......... .......... .......... .......... .......... 2031 ATAATTTTTT TTGTTTTGGC TTGTGACTTC TGTTGATGTT GGCACGATAA TGAGATTGTC 65801 .......... .......... .......... .......... .......... .......... 2031 AATGCAATTG CTTTACAGAG CACATCTACA CGTAGAAACT ATTAGGTGCA AGGCAGTTTT 65861 .......... .......... .......... .......... .......... .......... 2031 GCTTGTTTTA TAATTGGAAC TGTTCCGTTT GTTAAGAAAT AACCTAGTCA AAACTCAAAA 65921 .......... .......... .......... .......... .......... .......... 2031 GATATATTTC TATTTTTAGT CTCTGCCTTC TTCCAGTGTT TGCAATTTTG GGGAAAATTT 65981 .......... .......... .......... .......... .......... .......... 2031 ATTCCATTTT GCTCGATTTT TTTCTTCCAT TTAATAATTT ATTGTTTACT TGCAAAGAAG 66041 .......... .......... .......... .......... .......... .......... 2031 TAAAAAAATT TCTTTGGATT TTTAGCCTAA GTCTTTCTCA TTAAGTTGAT ATGCTTGTTT 66101 .......... .......... .......... .......... .......... .......... 2031 TAACATCTCC TGTTTTATGC TATTAGGGGA ACTGTCAGCA ATATCAATTT GTAAGAAACA 66161 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GGGA ACTGTCAGCA ATATCAATTT GTAAGAAACA 2065 TACAGCAATC CCATGGTGTT GGTGTGGGTA CCAATAAATC ACCTAAATCC CCCTGGATGC 66221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGCAATC CCATGGTGTT GGTGTGGGTA CCAATAAATC ACCTAAATCC CCCTGGATGC 2125 CTTTCTCTAT GTTATTCGGA GCTATTTCAG CTAAAGTGTC TCCAAAAGAT TTGAAATTGG 66281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTCTAT GTTATTCGGA GCTATTTCAG CTAAAGTGTC TCCAAAAGAT TTGAAATTGG 2185 TTCATGCACA TTATGACTTG TTCAGGGTAT GTTGTGTTGA CAGGTCTAAT AATTTTCTTT 66341 |||||||||| |||||||||| |||||| TTCATGCACA TTATGACTTG TTCAGG.... .......... .......... .......... 2211 TTTAACTTTC TTCTTACGCC CTGAACCTAT CTCTGTTTTT TTTTTCCTTA GAGCAAAAAA 66401 ||||||||| .......... .......... .......... .......... .......... .AGCAAAAAA 2220 ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG TGGGTGATCA GTTATTGAAG 66461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCCCGGA ATGATTTCAT TAGAAGGCTG AGGTTGATAG TGGGTGATCA GTTATTGAAG 2280 TCTACCATAA CCAATCTCCA GTGTAAGGTA CTGTGCTCCG ATCCATATAT GATTTGGTAG 66521 |||||||||| |||||||||| ||||||| TCTACCATAA CCAATCTCCA GTGTAAG... .......... .......... .......... 2307 TTTTGTACTT CCGATGGGGT GTTTGTTGAC AACTGCACTT GTCTCGAATT GATATATTAA 66581 .......... .......... .......... .......... .......... .......... 2307 TTTTGGTTTA AGCGAAGTAG GAAAAAAAGT TGGTTTACTC TTTAGTTTGG GTGGCAAGTT 66641 .......... .......... .......... .......... .......... .......... 2307 TTTCTCAATA AGTTTAGGTG GCATATGTAT CCTTTTATTT TATATTTCCT TTTTGGTCCA 66701 .......... .......... .......... .......... .......... .......... 2307 AGAATCTCTC CTCTAGTTTA AAGTGTATTG AGACCTTACT GTTGTCACTA TATAGTCAAT 66761 .......... .......... .......... .......... .......... .......... 2307 CTGGTTGTTT CTGTTGGTGG TGGTTGCTCG ATTCTTAAAT GCCCTTGTTG TGGCGGCATT 66821 .......... .......... .......... .......... .......... .......... 2307 ATTATACTTT CTCCGTTGTC TTTTTCCTTT CTTTCCAAGG AGTGAATTTT ATTCTGATGT 66881 .......... .......... .......... .......... .......... .......... 2307 ACTATCATCA TCATAAGAAT GCTTACAAGT AGGGGCGCGG ATTACAGTAT GGGCAATGAT 66941 .......... .......... .......... .......... .......... .......... 2307 GAAATCCATT CCCTATATAA CTAATGATCC ACTAAATGTA ATGCATGAGA TCGTCCTAAC 67001 .......... .......... .......... .......... .......... .......... 2307 ATCAGAACAA GAATCTGGTC ATTTCAAAAA CCTTAAAGAT AATTTAGAAT CTAAAGGCTA 67061 .......... .......... .......... .......... .......... .......... 2307 GACAACATAG ATGTCTTAAT GTGATTAATT TATGTAGAGG ACATGCATGT CAATTGGTAT 67121 .......... .......... .......... .......... .......... .......... 2307 ACTTTAGAAG TGGCTCTGGG ATTAATAATA TCATTAATAC ACTCAGCTTT CACTTTAGTG 67181 .......... .......... .......... .......... .......... .......... 2307 TACCCAAGTC ACAAATGTTT TTATAATGAA GTTAGTAACT TTACCTAAAT ATCATAGAAT 67241 .......... .......... .......... .......... .......... .......... 2307 CACTGAACTA TATTTTTAAT AAAAGTCTGT TACTGAGGAG AGAAGCTAAA ATTTGCCTGA 67301 .......... .......... .......... .......... .......... .......... 2307 ATATCATGGA GTCGCTTAGA GGGAAACAAA TAAGACATTC TGTATGATAT TTGAGTAAAG 67361 .......... .......... .......... .......... .......... .......... 2307 TGAATGATTC TTTTTATTAC AAAACATTGT TTAGTGACTT CTAGTGATAT TTAGCCAAAG 67421 .......... .......... .......... .......... .......... .......... 2307 TTGAGTGACT ATTGACTTGT AAAGTACCAC TTTGTTCCTC TTGTAGTGTT TTATTCAAGA 67481 .......... .......... .......... .......... .......... .......... 2307 ATTGATTGGA TTTGTTTTTA TGGTACATGA CAAATTTGTA TTCCAATAAA TCAAAAACTA 67541 .......... .......... .......... .......... .......... .......... 2307 GATTGATTAG GAATTGAGTG GCAAGTGCAA TTTACTCTTT AAGTATACCA TTTATTTGAC 67601 .......... .......... .......... .......... .......... .......... 2307 CTGTAGTACG TGGTACTGCA TATATTTTTA CCTGGATCTT TGAATTTCTC AGATGTACGG 67661 .......... .......... .......... .......... .......... .......... 2307 GTGGAACTTG TTAAGTCTCG TCCCATGACG TGACTTCTCT TGGTGACACA TTTTCCTGGG 67721 .......... .......... .......... .......... .......... .......... 2307 TTTATTTTAT TAGTCTGGTT GGTATAGGTC TTTACACGAC TTATTAGTAC ATCTATTTGG 67781 .......... .......... .......... .......... .......... .......... 2307 GCCTTCCCTT TGTTGCTGTA TTCTCTGTCG TCTCTTTTGC TTCTTTTATG TGGTGGGATT 67841 .......... .......... .......... .......... .......... .......... 2307 TATATATTCT ACTCTTGGTA AGTAAATGGA TGTGCAGTTT TGGTATATGC AGGCTACTGA 67901 .......... .......... .......... .......... .......... .......... 2307 ATGAATAGTA TAGAATGTTA TCTGAGGGGG CCTTTAGAAG TTTGTTCTTT ATGTTTGCAG 67961 .......... .......... .......... .......... .......... .......... 2307 CCGCCTTCCG CATCTCCATG CTTTCTGAAT GTGCCGAGTG GGGAGAGTAA TTGTTGAGGC 68021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCTTCCG CATCTCCATG CTTTCTGAAT GTGCCGAGTG GGGAGAGTAA TTGTTGAGGC 2367 TGTACCAGCA AGGGTGGATC GCTGCGTGGT GGCGAAGAGT CCACTTTTAC CAATCAAGCG 68081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACCAGCA AGGGTGGATC GCTGCGTGGT GGCGAAGAGT CCACTTTTAC CAATCAAGCG 2427 TCGTCCTCTT CTCTCTATCT CTCTTTGTTT TTGGTGTTAT GTAGCTTTAG TTTCTTTGAA 68141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTCCTCTT CTCTCTATCT CTCTTTGTTT TTGGTGTTAT GTAGCTTTAG TTTCTTTGAA 2487 CATTTTGTGA TTATATGCAG TTATGTCTAG ACTTGCACCT TCTGTTCTTC TATATATGCG 68201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTGTGA TTATATGCAG TTATGTCTAG ACTTGCACCT TCTGTTCTTC TATATATGCG 2547 ACTTCCAATT CTCTCCCGTC TGTGATGGCA ATAATTGGTG CACAG-CAGG AGTTACTGGA 68260 |||||||||| ||||| |||| |||||||||| |||||||||| ||||| | |||||||||| ACTTCCAATT CTCTCACGTC TGTGATGGCA ATAATTGGTG CACAGAAAAA AGTTACTGGA 2607 GCTTAAATTG GTTTTAGGTT GGCATCTTGA AAGTGCTGCT AGTCGGTTTA ATCATGGTTT 68320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTAAATTG GTTTTAGGTT GGCATCTTGA AAGTGCTGCT AGTCGGTTTA ATCATGGTTT 2667 GAAGAGAATA AAACTGTAGC AAACATCGGT GGCGTTGTAT TTTAACAAAA ACTTAGGCAT 68380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGAATA AAACTGTAGC AAACATCGGT GGCGTTGTAT TTTAACAAAA ACTTAGGCAT 2727 TGTACTGTTA TCACTTTGAA GCTGAGGGGT GA 68412 |||||||||| |||||||||| |||||||||| || TGTACTGTTA TCACTTTGAA GCTGAGGGGT GA 2759 hqPGS_C08HBa0320P23.1+_SGN-U315068+ (59622 59949,61337 61455,61860 63103,63556 63797,64975 65072,66128 66307,66393 66488,67962 68412) ******************************************************************************** EST sequence 3 +strand 1149 n (File: SGN-U334954+) 1 GGGGGGAACA CATGGAACTC CCCCGCGGTG GCAGCCGCTC TAGAACTAGT GGATCCCCCG 61 GGCTGCAGGA ATTCGGCACG AGGCTACATC TATATGGGGC AACATGAAGT GCATCTCTTG 121 GCACAAGTTG ATTGCTCCAG TGGGTACCTT CTGTGCGCTC GTCTTCAGAA AACTGAACTT 181 TGACTTGAAA TAGTATTCTT TGCTGCGGGT GCACAAGAAT TTGCAATATG AGGTTTGAAG 241 GCTTTGTATC AGCACATATT TTTGTCTATA TATGAATTTT CATTCATTGA CAGTCCTTGG 301 CGAACTTGTA AGAGGTGGAT AAAGTTAGCT TCTCAGAGGA TGTGTGAATT CTATAATTTT 361 GATCATTTTG AAAGCAGAAC TGTTCTGATG TTGAGCATTG TTGCACTTGA TCTCCTCGCT 421 TACGGGGAAC TGTCAGCAAT ATCAATTTGT AAGAAACATA CAGCAATCCC ATGGTGTTGG 481 TGTGGGTACC AATAAATCAC CTAAATCCCC CTGGATGCCT TTCTCTATGT TATTCGGAGC 541 TATTTCAGCT AAAGTGTCTC CAAAAGATTT GAAATTGGTT CATGCACATT ATGACTTGTT 601 CAGGAGCAAA AAAATTTCCC GGAATGATTT CATTAGAAGG CTGAGGTTGA TAGTGGGTGA 661 TCAGTTATTG AAGTCTACCA TAACCAATCT CCAGTGTAAG CCGCCTTCCG CATCTCCATG 721 CTTTCTGAAT GTGCCGAGTG GGGAGAGTAA TTGTTGAGGC TGTACCAGCA AGGGTGGATC 781 GCTGCGTGGT GGCGAAGAGT CCACTTTTAC CAATCAAGCG TCGTCCTCTT CTCTCTATCT 841 CTCTTTGTTT TTGGTGTTAT GTAGCTTTAG TTTCTTTGAA CATTTTGTGA TTATATGCAG 901 TTATGTCTAG ACTTTGCACC TTCTGGTCTT CAATATATGC GATTTCCAAT TCTCTCCCGT 961 CTGGGATGGC AATAATTGGT GCACAGCAGG AGTTTATGGA GCTTAATTTG GTTTTAGGGT 1021 GGCATCTTGA AAGTGCTGCT AACCGGGTTA ACCTGGGTTG GAAAAAAAAA AAATTGGAAA 1081 AAACTTCGGG GGGGTTTTAT TTTAAAAAAA ATTAACCCTT GTTCTGGTTA AAAAAAAAAA 1141 AAAAATCTG Predicted gene structure (within gDNA segment 63806 to 70414): Exon 1 65237 65576 ( 340 n); cDNA 85 424 ( 340 n); score: 1.000 Intron 1 65577 66127 ( 551 n); Pd: 0.839 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 66128 66307 ( 180 n); cDNA 425 604 ( 180 n); score: 1.000 Intron 2 66308 66392 ( 85 n); Pd: 0.916 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 3 66393 66488 ( 96 n); cDNA 605 700 ( 96 n); score: 1.000 Intron 3 66489 67961 (1473 n); Pd: 0.796 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 67962 68389 ( 428 n); cDNA 701 1128 ( 428 n); score: 0.917 Intron 4 68390 68882 ( 493 n); Pd: 0.000 (s: 0.76), Pa: 0.563 (s: 0) Exon 5 68883 68898 ( 16 n); cDNA 1129 1143 ( 15 n); score: 0.688 MATCH C08HBa0320P23.1+ SGN-U334954+ 0.966 1060 0.923 C PGS_C08HBa0320P23.1+_SGN-U334954+ (65237 65576,66128 66307,66393 66488,67962 68389,68883 68898) Alignment (genomic DNA sequence = upper lines): TACATCTATA TGGGGCAACA TGAAGTGCAT CTCTTGGCAC AAGTTGATTG CTCCAGTGGG 65296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATCTATA TGGGGCAACA TGAAGTGCAT CTCTTGGCAC AAGTTGATTG CTCCAGTGGG 144 TACCTTCTGT GCGCTCGTCT TCAGAAAACT GAACTTTGAC TTGAAATAGT ATTCTTTGCT 65356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTTCTGT GCGCTCGTCT TCAGAAAACT GAACTTTGAC TTGAAATAGT ATTCTTTGCT 204 GCGGGTGCAC AAGAATTTGC AATATGAGGT TTGAAGGCTT TGTATCAGCA CATATTTTTG 65416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGGTGCAC AAGAATTTGC AATATGAGGT TTGAAGGCTT TGTATCAGCA CATATTTTTG 264 TCTATATATG AATTTTCATT CATTGACAGT CCTTGGCGAA CTTGTAAGAG GTGGATAAAG 65476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATATATG AATTTTCATT CATTGACAGT CCTTGGCGAA CTTGTAAGAG GTGGATAAAG 324 TTAGCTTCTC AGAGGATGTG TGAATTCTAT AATTTTGATC ATTTTGAAAG CAGAACTGTT 65536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCTTCTC AGAGGATGTG TGAATTCTAT AATTTTGATC ATTTTGAAAG CAGAACTGTT 384 CTGATGTTGA GCATTGTTGC ACTTGATCTC CTCGCTTACG GTAATCTTAC TGTTGGAAGA 65596 |||||||||| |||||||||| |||||||||| |||||||||| CTGATGTTGA GCATTGTTGC ACTTGATCTC CTCGCTTACG .......... .......... 424 AAGAGAATGA TCTCTTCTTT TAGTTGATTC TTCCGAGTCT GAGCAAAGGG TGTGTTTAGT 65656 .......... .......... .......... .......... .......... .......... 424 TTCTGTTGAG GAACTGTTCT CAAGTTTTAG CTAAAGGAGC ATTCAGTATG ATGATATCTT 65716 .......... .......... .......... .......... .......... .......... 424 GACACCATAG GAAGCAAACT AGGTGATAAT TTTTTTTGTT TTGGCTTGTG ACTTCTGTTG 65776 .......... .......... .......... .......... .......... .......... 424 ATGTTGGCAC GATAATGAGA TTGTCAATGC AATTGCTTTA CAGAGCACAT CTACACGTAG 65836 .......... .......... .......... .......... .......... .......... 424 AAACTATTAG GTGCAAGGCA GTTTTGCTTG TTTTATAATT GGAACTGTTC CGTTTGTTAA 65896 .......... .......... .......... .......... .......... .......... 424 GAAATAACCT AGTCAAAACT CAAAAGATAT ATTTCTATTT TTAGTCTCTG CCTTCTTCCA 65956 .......... .......... .......... .......... .......... .......... 424 GTGTTTGCAA TTTTGGGGAA AATTTATTCC ATTTTGCTCG ATTTTTTTCT TCCATTTAAT 66016 .......... .......... .......... .......... .......... .......... 424 AATTTATTGT TTACTTGCAA AGAAGTAAAA AAATTTCTTT GGATTTTTAG CCTAAGTCTT 66076 .......... .......... .......... .......... .......... .......... 424 TCTCATTAAG TTGATATGCT TGTTTTAACA TCTCCTGTTT TATGCTATTA GGGGAACTGT 66136 ||||||||| .......... .......... .......... .......... .......... .GGGAACTGT 433 CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG GTGTTGGTGT GGGTACCAAT 66196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAATATC AATTTGTAAG AAACATACAG CAATCCCATG GTGTTGGTGT GGGTACCAAT 493 AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA 66256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCACCTA AATCCCCCTG GATGCCTTTC TCTATGTTAT TCGGAGCTAT TTCAGCTAAA 553 GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG ACTTGTTCAG GGTATGTTGT 66316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTGTCTCCAA AAGATTTGAA ATTGGTTCAT GCACATTATG ACTTGTTCAG G......... 604 GTTGACAGGT CTAATAATTT TCTTTTTTAA CTTTCTTCTT ACGCCCTGAA CCTATCTCTG 66376 .......... .......... .......... .......... .......... .......... 604 TTTTTTTTTT CCTTAGAGCA AAAAAATTTC CCGGAATGAT TTCATTAGAA GGCTGAGGTT 66436 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AGCA AAAAAATTTC CCGGAATGAT TTCATTAGAA GGCTGAGGTT 648 GATAGTGGGT GATCAGTTAT TGAAGTCTAC CATAACCAAT CTCCAGTGTA AGGTACTGTG 66496 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GATAGTGGGT GATCAGTTAT TGAAGTCTAC CATAACCAAT CTCCAGTGTA AG........ 700 CTCCGATCCA TATATGATTT GGTAGTTTTG TACTTCCGAT GGGGTGTTTG TTGACAACTG 66556 .......... .......... .......... .......... .......... .......... 700 CACTTGTCTC GAATTGATAT ATTAATTTTG GTTTAAGCGA AGTAGGAAAA AAAGTTGGTT 66616 .......... .......... .......... .......... .......... .......... 700 TACTCTTTAG TTTGGGTGGC AAGTTTTTCT CAATAAGTTT AGGTGGCATA TGTATCCTTT 66676 .......... .......... .......... .......... .......... .......... 700 TATTTTATAT TTCCTTTTTG GTCCAAGAAT CTCTCCTCTA GTTTAAAGTG TATTGAGACC 66736 .......... .......... .......... .......... .......... .......... 700 TTACTGTTGT CACTATATAG TCAATCTGGT TGTTTCTGTT GGTGGTGGTT GCTCGATTCT 66796 .......... .......... .......... .......... .......... .......... 700 TAAATGCCCT TGTTGTGGCG GCATTATTAT ACTTTCTCCG TTGTCTTTTT CCTTTCTTTC 66856 .......... .......... .......... .......... .......... .......... 700 CAAGGAGTGA ATTTTATTCT GATGTACTAT CATCATCATA AGAATGCTTA CAAGTAGGGG 66916 .......... .......... .......... .......... .......... .......... 700 CGCGGATTAC AGTATGGGCA ATGATGAAAT CCATTCCCTA TATAACTAAT GATCCACTAA 66976 .......... .......... .......... .......... .......... .......... 700 ATGTAATGCA TGAGATCGTC CTAACATCAG AACAAGAATC TGGTCATTTC AAAAACCTTA 67036 .......... .......... .......... .......... .......... .......... 700 AAGATAATTT AGAATCTAAA GGCTAGACAA CATAGATGTC TTAATGTGAT TAATTTATGT 67096 .......... .......... .......... .......... .......... .......... 700 AGAGGACATG CATGTCAATT GGTATACTTT AGAAGTGGCT CTGGGATTAA TAATATCATT 67156 .......... .......... .......... .......... .......... .......... 700 AATACACTCA GCTTTCACTT TAGTGTACCC AAGTCACAAA TGTTTTTATA ATGAAGTTAG 67216 .......... .......... .......... .......... .......... .......... 700 TAACTTTACC TAAATATCAT AGAATCACTG AACTATATTT TTAATAAAAG TCTGTTACTG 67276 .......... .......... .......... .......... .......... .......... 700 AGGAGAGAAG CTAAAATTTG CCTGAATATC ATGGAGTCGC TTAGAGGGAA ACAAATAAGA 67336 .......... .......... .......... .......... .......... .......... 700 CATTCTGTAT GATATTTGAG TAAAGTGAAT GATTCTTTTT ATTACAAAAC ATTGTTTAGT 67396 .......... .......... .......... .......... .......... .......... 700 GACTTCTAGT GATATTTAGC CAAAGTTGAG TGACTATTGA CTTGTAAAGT ACCACTTTGT 67456 .......... .......... .......... .......... .......... .......... 700 TCCTCTTGTA GTGTTTTATT CAAGAATTGA TTGGATTTGT TTTTATGGTA CATGACAAAT 67516 .......... .......... .......... .......... .......... .......... 700 TTGTATTCCA ATAAATCAAA AACTAGATTG ATTAGGAATT GAGTGGCAAG TGCAATTTAC 67576 .......... .......... .......... .......... .......... .......... 700 TCTTTAAGTA TACCATTTAT TTGACCTGTA GTACGTGGTA CTGCATATAT TTTTACCTGG 67636 .......... .......... .......... .......... .......... .......... 700 ATCTTTGAAT TTCTCAGATG TACGGGTGGA ACTTGTTAAG TCTCGTCCCA TGACGTGACT 67696 .......... .......... .......... .......... .......... .......... 700 TCTCTTGGTG ACACATTTTC CTGGGTTTAT TTTATTAGTC TGGTTGGTAT AGGTCTTTAC 67756 .......... .......... .......... .......... .......... .......... 700 ACGACTTATT AGTACATCTA TTTGGGCCTT CCCTTTGTTG CTGTATTCTC TGTCGTCTCT 67816 .......... .......... .......... .......... .......... .......... 700 TTTGCTTCTT TTATGTGGTG GGATTTATAT ATTCTACTCT TGGTAAGTAA ATGGATGTGC 67876 .......... .......... .......... .......... .......... .......... 700 AGTTTTGGTA TATGCAGGCT ACTGAATGAA TAGTATAGAA TGTTATCTGA GGGGGCCTTT 67936 .......... .......... .......... .......... .......... .......... 700 AGAAGTTTGT TCTTTATGTT TGCAGCCGCC TTCCGCATCT CCATGCTTTC TGAATGTGCC 67996 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CCGCC TTCCGCATCT CCATGCTTTC TGAATGTGCC 735 GAGTGGGGAG AGTAATTGTT GAGGCTGTAC CAGCAAGGGT GGATCGCTGC GTGGTGGCGA 68056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGGGAG AGTAATTGTT GAGGCTGTAC CAGCAAGGGT GGATCGCTGC GTGGTGGCGA 795 AGAGTCCACT TTTACCAATC AAGCGTCGTC CTCTTCTCTC TATCTCTCTT TGTTTTTGGT 68116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTCCACT TTTACCAATC AAGCGTCGTC CTCTTCTCTC TATCTCTCTT TGTTTTTGGT 855 GTTATGTAGC TTTAGTTTCT TTGAACATTT TGTGATTATA TGCAGTTATG TCTAGAC-TT 68175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GTTATGTAGC TTTAGTTTCT TTGAACATTT TGTGATTATA TGCAGTTATG TCTAGACTTT 915 GCACCTTCTG TTCTTCTATA TATGCGACTT CCAATTCTCT CCCGTCTGTG ATGGCAATAA 68235 |||||||||| ||||| ||| ||||||| || |||||||||| |||||||| | |||||||||| GCACCTTCTG GTCTTCAATA TATGCGATTT CCAATTCTCT CCCGTCTGGG ATGGCAATAA 975 TTGGTGCACA GCAGGAGTTA CTGGAGCTTA AATTGGTTTT AGGTTGGCAT CTTGAAAGTG 68295 |||||||||| ||||||||| ||||||||| | |||||||| ||| |||||| |||||||||| TTGGTGCACA GCAGGAGTTT ATGGAGCTTA ATTTGGTTTT AGGGTGGCAT CTTGAAAGTG 1035 CTGCTAGTCG GTTTAATCAT GGTTTGAAGA GAATAAAACT GTAGCAAACA TCGGTGGCGT 68355 |||||| || | |||| | |||| ||| | || |||| | | | |||| |||| || || CTGCTAACCG GGTTAACCTG GGTTGGAAAA AAAAAAAATT GGAAAAAACT TCGGGGGGGT 1095 TGTATTTTAA CAAAAACTTA GGCATTGTAC TGTTATCACT TTGAAGCTGA GGGGTGAAAT 68415 | |||||||| ||||| ||| | |||| | || | TTTATTTTAA -AAAAAATTA ACCCTTGTTC TGGT...... .......... .......... 1128 TTTTCCTTTG AGTTTTCGCA TTATTATGTT TCTAATTCAC TTGCCTAAAA ATTCTTGAAC 68475 .......... .......... .......... .......... .......... .......... 1128 ATTGTTATAA TAGCCTTCTG GTATGAACTT GTAATATTTC ACTGGTACAA TATGAATTTC 68535 .......... .......... .......... .......... .......... .......... 1128 TCTAGAATCG ATTTTCATGT ATACTGCATA TAGTAAGTGG TACACTCTGC GCGAAATTAT 68595 .......... .......... .......... .......... .......... .......... 1128 TCCTTAATAA CTACTCAAAT ATTTTGTATA AAAATGAAAT GTTAGAATAT CCATGAAAAT 68655 .......... .......... .......... .......... .......... .......... 1128 CAAGTTTAAT CTTTTTCACA TAATTTTTAA GTTCAGGAGA ATTGTATTTA ACGTATGCTC 68715 .......... .......... .......... .......... .......... .......... 1128 ATCAATTATG CAGATAAATT TCACGGGGAA AAAATATTGT TATTCTTTAC ATCCATATAT 68775 .......... .......... .......... .......... .......... .......... 1128 TCATTTGGTT GAATTGGTTA ATAATACATT CTTTCGTTTT GCTAAGTGAT ATGTAAACAT 68835 .......... .......... .......... .......... .......... .......... 1128 TAGATATAAA TATATTATAC GTATGTAAGA ACACCTCACT AATGCAGTCA CAACAATGAA 68895 | | || || || .......... .......... .......... .......... .......T-A AAAAAAAAAA 1140 AAA 68898 ||| AAA 1143 hqPGS_C08HBa0320P23.1+_SGN-U334954+ (65237 65576,66128 66307,66393 66488,67962 68389) ******************************************************************************** EST sequence 4 +strand 1023 n (File: SGN-U334955+) 1 GGGGNTACGG TTTTTNGACT GATAACCCAT GGACTACCNC TGGACTCCAC CGCGGCGGCA 61 ACCGCTCTAT ACCTCGTGGA TCCCGCATTC TGCACGAATT CTGCACGAGG CTACATGGAT 121 ATGGGGCAAC ATGAAGTGCA TCTCTTGGCA CAAGTTGATT GCTCCAGTGG GTACCTTCTG 181 TGCTCTCGTC TTCAAAAAAC TGAACTTTGA CTTGAAATAG TATTCTTTGC TGCTGGTGCA 241 CAAGAATTTG CAATATGAGG TTTGAAGGCT TTGTATCAGC ACATATTTTT GTCTATATCT 301 GAATTTTCAT CTCATTGACA GTCCTTGGCG AACTTGTAAG AGGTGGATCA AGCTAGCTAC 361 TCACAAGATG TGTGAATACT ATAGTTCTGA TCATCTTGAA AGCAGAACTG TTCTGATGAT 421 GAACATTGAA GCACTTGATC TCCTCGATTG CAGCGAACTG TCAGCAGTAT CAATCTGTAA 481 GATACATACA CCAATCCCAT GACGTCTGTG CGGGTGCCAA TAACTCACCT AAATTCCCCT 541 GTTGCCCTTT ATGTATGTAC TCGGAGCTAT TTCAACTAAG TGTCCTCAAA ATATCTGAAA 601 ATGGCTCATG CCCATTATGA CTTGTTCAAG AACAAAAAAA TTTCCCGGAA TGATTGCATT 661 TGAAGGGTTG ACGGCGCTCG TGGGGCGATC AGTTTATTGA AGGTCTAACA TTAACCAGTC 721 TTCGGGGGCA AGCCAACTTT CCGAATTTTC CATCCTTTGT GAAATGTGCC TATTTGGGAA 781 AATTAATAGG TGCATGCTGG TCCCAACCAC GGTTGGTATC AACTGCCTTG TGGGTCAAAA 841 AATAAAACTG TTTCCCAATC AAACGGGGGG CCCTCCTCAA TGTTTAAAAA AACTTTGGAT 901 TTGGGGGGGA TTATAGAACC TTAAAATTCC CTCTTCCCCC ATATGGGGTT TTATTTCCAC 961 ACCTTTGGGT AAACTTGACA CCTTCAGATA GACCCAATAA TGCAAAAAAC AAGAAATTCT 1021 CCT Predicted gene structure (within gDNA segment 63464 to 72550): Exon 1 65237 65576 ( 340 n); cDNA 112 452 ( 341 n); score: 0.928 Intron 1 65577 66127 ( 551 n); Pd: 0.839 (s: 0.86), Pa: 0.990 (s: 0.88) Exon 2 66128 66307 ( 180 n); cDNA 453 630 ( 178 n); score: 0.828 Intron 2 66308 66392 ( 85 n); Pd: 0.916 (s: 0.84), Pa: 0.943 (s: 0.77) Exon 3 66393 66488 ( 96 n); cDNA 631 732 ( 102 n); score: 0.677 Intron 3 66489 67961 (1473 n); Pd: 0.796 (s: 0.63), Pa: 0.994 (s: 0.62) Exon 4 67962 68007 ( 46 n); cDNA 733 781 ( 49 n); score: 0.620 Intron 4 68008 71886 (3879 n); Pd: 0.000 (s: 0.62), Pa: 0.961 (s: 0) Exon 5 71887 71925 ( 39 n); cDNA 782 815 ( 34 n); score: 0.590 MATCH C08HBa0320P23.1+ SGN-U334955+ 0.860 701 0.685 C PGS_C08HBa0320P23.1+_SGN-U334955+ (65237 65576,66128 66307,66393 66488,67962 68007,71887 71925) Alignment (genomic DNA sequence = upper lines): TACATCTATA TGGGGCAACA TGAAGTGCAT CTCTTGGCAC AAGTTGATTG CTCCAGTGGG 65296 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATGGATA TGGGGCAACA TGAAGTGCAT CTCTTGGCAC AAGTTGATTG CTCCAGTGGG 171 TACCTTCTGT GCGCTCGTCT TCAGAAAACT GAACTTTGAC TTGAAATAGT ATTCTTTGCT 65356 |||||||||| || ||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TACCTTCTGT GCTCTCGTCT TCAAAAAACT GAACTTTGAC TTGAAATAGT ATTCTTTGCT 231 GCGGGTGCAC AAGAATTTGC AATATGAGGT TTGAAGGCTT TGTATCAGCA CATATTTTTG 65416 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGTGCAC AAGAATTTGC AATATGAGGT TTGAAGGCTT TGTATCAGCA CATATTTTTG 291 TCTATATATG AATTTTCAT- TCATTGACAG TCCTTGGCGA ACTTGTAAGA GGTGGATAAA 65475 ||||||| || ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TCTATATCTG AATTTTCATC TCATTGACAG TCCTTGGCGA ACTTGTAAGA GGTGGATCAA 351 GTTAGCTTCT CAGAGGATGT GTGAATTCTA TAATTTTGAT CATTTTGAAA GCAGAACTGT 65535 | ||||| || || | ||||| |||||| ||| || || |||| ||| |||||| |||||||||| GCTAGCTACT CACAAGATGT GTGAATACTA TAGTTCTGAT CATCTTGAAA GCAGAACTGT 411 TCTGATGTTG AGCATTGTTG CACTTGATCT CCTCGCTTAC GGTAATCTTA CTGTTGGAAG 65595 ||||||| || | ||||| | |||||||||| ||||| || | TCTGATGATG AACATTGAAG CACTTGATCT CCTCGATTGC A......... .......... 452 AAAGAGAATG ATCTCTTCTT TTAGTTGATT CTTCCGAGTC TGAGCAAAGG GTGTGTTTAG 65655 .......... .......... .......... .......... .......... .......... 452 TTTCTGTTGA GGAACTGTTC TCAAGTTTTA GCTAAAGGAG CATTCAGTAT GATGATATCT 65715 .......... .......... .......... .......... .......... .......... 452 TGACACCATA GGAAGCAAAC TAGGTGATAA TTTTTTTTGT TTTGGCTTGT GACTTCTGTT 65775 .......... .......... .......... .......... .......... .......... 452 GATGTTGGCA CGATAATGAG ATTGTCAATG CAATTGCTTT ACAGAGCACA TCTACACGTA 65835 .......... .......... .......... .......... .......... .......... 452 GAAACTATTA GGTGCAAGGC AGTTTTGCTT GTTTTATAAT TGGAACTGTT CCGTTTGTTA 65895 .......... .......... .......... .......... .......... .......... 452 AGAAATAACC TAGTCAAAAC TCAAAAGATA TATTTCTATT TTTAGTCTCT GCCTTCTTCC 65955 .......... .......... .......... .......... .......... .......... 452 AGTGTTTGCA ATTTTGGGGA AAATTTATTC CATTTTGCTC GATTTTTTTC TTCCATTTAA 66015 .......... .......... .......... .......... .......... .......... 452 TAATTTATTG TTTACTTGCA AAGAAGTAAA AAAATTTCTT TGGATTTTTA GCCTAAGTCT 66075 .......... .......... .......... .......... .......... .......... 452 TTCTCATTAA GTTGATATGC TTGTTTTAAC ATCTCCTGTT TTATGCTATT AGGGGAACTG 66135 | |||||| .......... .......... .......... .......... .......... ..GCGAACTG 460 TCAGCAATAT CAATTTGTAA GAAACATACA GCAATCCCAT GGTGTTGGTG TGGGTACCAA 66195 |||||| ||| |||| ||||| || ||||||| ||||||||| | || ||| |||| |||| TCAGCAGTAT CAATCTGTAA GATACATACA CCAATCCCAT GACGTCTGTG CGGGTGCCAA 520 TAAATCACCT AAATCCCCCT GGATGCCTTT CTCTATGTTA TTCGGAGCTA TTTCAGCTAA 66255 ||| |||||| |||| ||||| | ||||| | |||| || ||||||||| ||||| || | TAACTCACCT AAATTCCCCT GTTGCCCTTT ATGTATG-TA CTCGGAGCTA TTTCAACT-A 578 AGTGTCTCCA AAAGATTTGA AATTGGTTCA TGCACATTAT GACTTGTTCA GGGTATGTTG 66315 |||||| || ||| || ||| || ||| ||| ||| |||||| |||||||||| | AGTGTCCTCA AAATATCTGA AAATGGCTCA TGCCCATTAT GACTTGTTCA AG........ 630 TGTTGACAGG TCTAATAATT TTCTTTTTTA ACTTTCTTCT TACGCCCTGA ACCTATCTCT 66375 .......... .......... .......... .......... .......... .......... 630 GTTTTTTTTT TCCTTAGAGC AAAAAAATTT CCCGGAATGA TTTCATTAGA A-GGCTGAGG 66434 | | |||||||||| |||||||||| || |||| || | || ||| | .......... .......AAC AAAAAAATTT CCCGGAATGA TTGCATTTGA AGGGTTGACG 673 TTGATAGT-G GGTGATCAG- TTATTGAA-G TCTACCA-TA ACCAATC-TC CAGTGTAAGG 66489 | | || | || |||||| |||||||| | |||| || || |||| || || | | ||| GCGCTCGTGG GGCGATCAGT TTATTGAAGG TCTAACATTA ACCAGTCTTC GGGGGCAAG. 732 TACTGTGCTC CGATCCATAT ATGATTTGGT AGTTTTGTAC TTCCGATGGG GTGTTTGTTG 66549 .......... .......... .......... .......... .......... .......... 732 ACAACTGCAC TTGTCTCGAA TTGATATATT AATTTTGGTT TAAGCGAAGT AGGAAAAAAA 66609 .......... .......... .......... .......... .......... .......... 732 GTTGGTTTAC TCTTTAGTTT GGGTGGCAAG TTTTTCTCAA TAAGTTTAGG TGGCATATGT 66669 .......... .......... .......... .......... .......... .......... 732 ATCCTTTTAT TTTATATTTC CTTTTTGGTC CAAGAATCTC TCCTCTAGTT TAAAGTGTAT 66729 .......... .......... .......... .......... .......... .......... 732 TGAGACCTTA CTGTTGTCAC TATATAGTCA ATCTGGTTGT TTCTGTTGGT GGTGGTTGCT 66789 .......... .......... .......... .......... .......... .......... 732 CGATTCTTAA ATGCCCTTGT TGTGGCGGCA TTATTATACT TTCTCCGTTG TCTTTTTCCT 66849 .......... .......... .......... .......... .......... .......... 732 TTCTTTCCAA GGAGTGAATT TTATTCTGAT GTACTATCAT CATCATAAGA ATGCTTACAA 66909 .......... .......... .......... .......... .......... .......... 732 GTAGGGGCGC GGATTACAGT ATGGGCAATG ATGAAATCCA TTCCCTATAT AACTAATGAT 66969 .......... .......... .......... .......... .......... .......... 732 CCACTAAATG TAATGCATGA GATCGTCCTA ACATCAGAAC AAGAATCTGG TCATTTCAAA 67029 .......... .......... .......... .......... .......... .......... 732 AACCTTAAAG ATAATTTAGA ATCTAAAGGC TAGACAACAT AGATGTCTTA ATGTGATTAA 67089 .......... .......... .......... .......... .......... .......... 732 TTTATGTAGA GGACATGCAT GTCAATTGGT ATACTTTAGA AGTGGCTCTG GGATTAATAA 67149 .......... .......... .......... .......... .......... .......... 732 TATCATTAAT ACACTCAGCT TTCACTTTAG TGTACCCAAG TCACAAATGT TTTTATAATG 67209 .......... .......... .......... .......... .......... .......... 732 AAGTTAGTAA CTTTACCTAA ATATCATAGA ATCACTGAAC TATATTTTTA ATAAAAGTCT 67269 .......... .......... .......... .......... .......... .......... 732 GTTACTGAGG AGAGAAGCTA AAATTTGCCT GAATATCATG GAGTCGCTTA GAGGGAAACA 67329 .......... .......... .......... .......... .......... .......... 732 AATAAGACAT TCTGTATGAT ATTTGAGTAA AGTGAATGAT TCTTTTTATT ACAAAACATT 67389 .......... .......... .......... .......... .......... .......... 732 GTTTAGTGAC TTCTAGTGAT ATTTAGCCAA AGTTGAGTGA CTATTGACTT GTAAAGTACC 67449 .......... .......... .......... .......... .......... .......... 732 ACTTTGTTCC TCTTGTAGTG TTTTATTCAA GAATTGATTG GATTTGTTTT TATGGTACAT 67509 .......... .......... .......... .......... .......... .......... 732 GACAAATTTG TATTCCAATA AATCAAAAAC TAGATTGATT AGGAATTGAG TGGCAAGTGC 67569 .......... .......... .......... .......... .......... .......... 732 AATTTACTCT TTAAGTATAC CATTTATTTG ACCTGTAGTA CGTGGTACTG CATATATTTT 67629 .......... .......... .......... .......... .......... .......... 732 TACCTGGATC TTTGAATTTC TCAGATGTAC GGGTGGAACT TGTTAAGTCT CGTCCCATGA 67689 .......... .......... .......... .......... .......... .......... 732 CGTGACTTCT CTTGGTGACA CATTTTCCTG GGTTTATTTT ATTAGTCTGG TTGGTATAGG 67749 .......... .......... .......... .......... .......... .......... 732 TCTTTACACG ACTTATTAGT ACATCTATTT GGGCCTTCCC TTTGTTGCTG TATTCTCTGT 67809 .......... .......... .......... .......... .......... .......... 732 CGTCTCTTTT GCTTCTTTTA TGTGGTGGGA TTTATATATT CTACTCTTGG TAAGTAAATG 67869 .......... .......... .......... .......... .......... .......... 732 GATGTGCAGT TTTGGTATAT GCAGGCTACT GAATGAATAG TATAGAATGT TATCTGAGGG 67929 .......... .......... .......... .......... .......... .......... 732 GGCCTTTAGA AGTTTGTTCT TTATGTTTGC AGCC-GCCTT CCGCA-TCTC CATGCTTTCT 67987 || | || ||| | | || ||| |||| | .......... .......... .......... ..CCAACTTT CCGAATTTTC CATCCTTTGT 760 G-AATGTGCC GAGTGGGGAG AGTAATTGTT GAGGCTGTAC CAGCAAGGGT GGATCGCTGC 68046 | |||||||| | | |||| | GAAATGTGCC TATTTGGGAA A......... .......... .......... .......... 781 GTGGTGGCGA AGAGTCCACT TTTACCAATC AAGCGTCGTC CTCTTCTCTC TATCTCTCTT 68106 .......... .......... .......... .......... .......... .......... 781 TGTTTTTGGT GTTATGTAGC TTTAGTTTCT TTGAACATTT TGTGATTATA TGCAGTTATG 68166 .......... .......... .......... .......... .......... .......... 781 TCTAGACTTG CACCTTCTGT TCTTCTATAT ATGCGACTTC CAATTCTCTC CCGTCTGTGA 68226 .......... .......... .......... .......... .......... .......... 781 TGGCAATAAT TGGTGCACAG CAGGAGTTAC TGGAGCTTAA ATTGGTTTTA GGTTGGCATC 68286 .......... .......... .......... .......... .......... .......... 781 TTGAAAGTGC TGCTAGTCGG TTTAATCATG GTTTGAAGAG AATAAAACTG TAGCAAACAT 68346 .......... .......... .......... .......... .......... .......... 781 CGGTGGCGTT GTATTTTAAC AAAAACTTAG GCATTGTACT GTTATCACTT TGAAGCTGAG 68406 .......... .......... .......... .......... .......... .......... 781 GGGTGAAATT TTTCCTTTGA GTTTTCGCAT TATTATGTTT CTAATTCACT TGCCTAAAAA 68466 .......... .......... .......... .......... .......... .......... 781 TTCTTGAACA TTGTTATAAT AGCCTTCTGG TATGAACTTG TAATATTTCA CTGGTACAAT 68526 .......... .......... .......... .......... .......... .......... 781 ATGAATTTCT CTAGAATCGA TTTTCATGTA TACTGCATAT AGTAAGTGGT ACACTCTGCG 68586 .......... .......... .......... .......... .......... .......... 781 CGAAATTATT CCTTAATAAC TACTCAAATA TTTTGTATAA AAATGAAATG TTAGAATATC 68646 .......... .......... .......... .......... .......... .......... 781 CATGAAAATC AAGTTTAATC TTTTTCACAT AATTTTTAAG TTCAGGAGAA TTGTATTTAA 68706 .......... .......... .......... .......... .......... .......... 781 CGTATGCTCA TCAATTATGC AGATAAATTT CACGGGGAAA AAATATTGTT ATTCTTTACA 68766 .......... .......... .......... .......... .......... .......... 781 TCCATATATT CATTTGGTTG AATTGGTTAA TAATACATTC TTTCGTTTTG CTAAGTGATA 68826 .......... .......... .......... .......... .......... .......... 781 TGTAAACATT AGATATAAAT ATATTATACG TATGTAAGAA CACCTCACTA ATGCAGTCAC 68886 .......... .......... .......... .......... .......... .......... 781 AACAATGAAA AAGGTGTTAC TGTATTAGAA TAAAGAATGA ATATAAGCAA CATTTGTGGC 68946 .......... .......... .......... .......... .......... .......... 781 AATTATTCAC AGCATACAAA ATTGACCATC TTCCATAAAA AAATTCTGAC TAACCAGATG 69006 .......... .......... .......... .......... .......... .......... 781 GCCTTCGGGG CTCAATGGCA ACTTTCTGGA CAATTAATAC ACGCCAGGAC CTTAGTCTTT 69066 .......... .......... .......... .......... .......... .......... 781 TCTTTCCCTT AATATAGAAA GATCATGTTG AGAATATCCA ACTTGATATC CTCAAGAAGA 69126 .......... .......... .......... .......... .......... .......... 781 ATGTTTTTTA ATTTTGATAC ATTGATACAA GAGCCTAAGG GTAGAGAAAA ATAGCTTCAT 69186 .......... .......... .......... .......... .......... .......... 781 TTAGATACAT ATACTGTGAT TCTGCTATGA GTTATGACCG CGGAGAAGAT GCATCAAGGC 69246 .......... .......... .......... .......... .......... .......... 781 TCGTTGATGG ATCCCAGCCT GGGGGTTTGA TGTCTGGCCA ATCACCTCGG CAGCCCAACC 69306 .......... .......... .......... .......... .......... .......... 781 TTATGTATAA ACTCTTTTTC CCTTCAGAGC AGAACAAAAT AACAGTAAAG AACATATGAC 69366 .......... .......... .......... .......... .......... .......... 781 AAGCTTGTGT AGACTTCTGG TTCATGCCAC AGGATGGGTT CATTTTATAT CCACAACAAA 69426 .......... .......... .......... .......... .......... .......... 781 CTCAAAGTTC ATTTGTGGAC AACTAAGAAT AGAACAAAGC ATGAAGCTTA GCGTACCTGG 69486 .......... .......... .......... .......... .......... .......... 781 AAGGTCTTTA TCTGCCAATA TTAAGCGCTT AAGGGCACTA AGCACAGCCT GAGCTACTGC 69546 .......... .......... .......... .......... .......... .......... 781 TTTTGAATAG TTAGGATCCC AACCTCCAAG CTTGACTACC ACTTCCGCGT TAGAGTAACC 69606 .......... .......... .......... .......... .......... .......... 781 ACGACCACTA TCTTGCATAT TCCTTTTTGC CTCCTCTTTT GCAGATTCTT CATCTGAAAT 69666 .......... .......... .......... .......... .......... .......... 781 TGATATTAGC AAAGACAAAG ACAAGCTTAA GAAATATGAC AAAAACTCCC ATTATAATTT 69726 .......... .......... .......... .......... .......... .......... 781 GGTGGTGCAC TTGGTAGGTG TGAACTGTTT CAGCACAACA AAGAAGGGTT TCTTAATGGG 69786 .......... .......... .......... .......... .......... .......... 781 TTGTACTGTA TGTATGGAAT CCTCCAAAGG ATACTGTTTG CTATACCCCC AGTCTGGTCC 69846 .......... .......... .......... .......... .......... .......... 781 CCGTGTTGCA AGAGAGGTGA TGTCACGTTC CTACAAAATT TCAACATGGA CTTGAAAGTT 69906 .......... .......... .......... .......... .......... .......... 781 GAAGCCCCAT TTACTTTTGA TGCTCCTTGC TTACTCCAGT TGCTCTCAGT TTAATGATCA 69966 .......... .......... .......... .......... .......... .......... 781 ATTATCCGCA CTTGATCAGG TGTTAACCAG TGATTCTAAG TGGTGTTACT CAGTGATAAT 70026 .......... .......... .......... .......... .......... .......... 781 ATAATGCCAA TTTTGGGTTT CTTCCTACAG TTGTCTACTA AGTTTGGTTC ACATAGGGGT 70086 .......... .......... .......... .......... .......... .......... 781 TCACAGAAGC ACTTAGAATC AGGAGAACCT TGTTTCTACC TCAGTTCCTA TTTTCATGTC 70146 .......... .......... .......... .......... .......... .......... 781 CATTTGTTAT CTCTTTCTCT GTGTAAGTTA TATAGTATCA ACAGTAGAGA GATGTTTCTA 70206 .......... .......... .......... .......... .......... .......... 781 GGAATTGAAA GACTCAAAAA TAATCAGATA AAGAAAATAT ACTACTTTTC TGCAAAAACT 70266 .......... .......... .......... .......... .......... .......... 781 GATATTCCCA GAAGGGGACT AGTTTTTGTG ATTTTTTTTT CCCACCTTAT TTGTAGTCCA 70326 .......... .......... .......... .......... .......... .......... 781 CATGTACATA CCTATATTGG CCTGTCAACT AAGGAATTTT ACCACTTCCC TTGAGTCGAT 70386 .......... .......... .......... .......... .......... .......... 781 TCAGAGAAGC ATTCACCACA AATACCAATT TATGATGCCA CATGCAAGCA GAGCAGTTTG 70446 .......... .......... .......... .......... .......... .......... 781 TCAGCTGATT TATGATGTAC ACTTAAGTTC TTCATTCCTT GCTCAAAAAA AGAAAAAGTT 70506 .......... .......... .......... .......... .......... .......... 781 GTAATAACTA CGTATTCTGA CACTGCTCGA CTATCTAAAG AAGGGGATTG GAAACACATG 70566 .......... .......... .......... .......... .......... .......... 781 GACGGAAAAA AAAGCGATAT AACAATAGAT AGGCTTGTAA AACATACTGT ACATCCAAAA 70626 .......... .......... .......... .......... .......... .......... 781 GAAGGGGAGA GAGAGCTTAG TTTCCTAACC TGTAGCTTGA GAAAGGGAAA GCCAGACTGT 70686 .......... .......... .......... .......... .......... .......... 781 GAATCCAGCA AAAAGATGCC TCCATTGGTT CACTCTTCCA GCAGCGCCTT TCTTCCCTCC 70746 .......... .......... .......... .......... .......... .......... 781 CAAGGTTGCA ATAACAGCAC GGGCTTGGCT AAACAAGAAT CAAATATAAA TACATTTTTA 70806 .......... .......... .......... .......... .......... .......... 781 CTTCCAGTTC CAAGTGAAAT GAGTAAGATA TGCAAGACAA AGTAAATACC TACTCAGACT 70866 .......... .......... .......... .......... .......... .......... 781 CTCTAGTATA GCACTTTCTG CTTCTGCTAC AGCATCAGAC CCCTCCTCAT TAACCCCTGG 70926 .......... .......... .......... .......... .......... .......... 781 AATTGGTTAG AGAAAAATTG AATAAAGAAA AGAAAAAGGA AGTGAAGCCA AACAAAGAGC 70986 .......... .......... .......... .......... .......... .......... 781 TACTATGCCT TTAGATGTTT TGGAGAAAGT AAATAAATTG TTCCAGTGAG CATCATTGAC 71046 .......... .......... .......... .......... .......... .......... 781 ACATGTTCAA ATTCCAATAT TTATCATTGT GCAGTTGTGA GAATTCAGAT CTTCCATGTA 71106 .......... .......... .......... .......... .......... .......... 781 AACAATTCTT TTTCTATTGC TCTTCCTTGT AAAACTTATT GTTTAACAAT AATTATCTTC 71166 .......... .......... .......... .......... .......... .......... 781 TCTGTGAAAA GAAAAATGGA TGTAACTCAC ACGTTTCCAT TGATTGCTTG GCATATGTTT 71226 .......... .......... .......... .......... .......... .......... 781 CTAGCAGCTC CTTTGTACAA AGTGGAGTGT ACCTAACCAC CATAAGAGTT GAACGAAAAT 71286 .......... .......... .......... .......... .......... .......... 781 TTAGAAGATC TTGACTAAAG AAGCAAGCAA GAATCCCAAG GGTGCAGGGG TTGCAGTAAC 71346 .......... .......... .......... .......... .......... .......... 781 TTAATGCAAA TGGACGATCA TGAATGTGGA AGAAGGAAAA TTATAACTAA TCCATATCTT 71406 .......... .......... .......... .......... .......... .......... 781 TTGTCAAGTC AAAAAAACAG ATTTTTAAGG AAAACCACCA TTCAGGCTAT TTATCATGAT 71466 .......... .......... .......... .......... .......... .......... 781 CCATTCATCT CTTTTCACCT AGGTTCGGTG AAAGAGGACT AATATATGGC ATATACGAAA 71526 .......... .......... .......... .......... .......... .......... 781 TACTGTAGCT CCGTCACTTT ATGCAGCATT ATCATTTACT CATGAAAGTG AGGAACATAC 71586 .......... .......... .......... .......... .......... .......... 781 CCTAGTCCAA CAGCCAGTTC TCGAGCAATC CTCTGGTTGA TTTCAGTAGA TTCCCCAACT 71646 .......... .......... .......... .......... .......... .......... 781 AAGTATATTG ATGTTCCTCT AAGGAGTTGT GTAATTCCAG CACTTAGGGA CTCCCAAGAC 71706 .......... .......... .......... .......... .......... .......... 781 TCCACAATGT CAGGCCATTT CAACTCGGAG TTTTGCTTCT TCAAGCTAAT TACTAATTGA 71766 .......... .......... .......... .......... .......... .......... 781 TCTTCATCTA TGTACCTACA CGATTTGTTT CATAAAACGT TGCAAAAGGA TAAAACAGAT 71826 .......... .......... .......... .......... .......... .......... 781 TCACTAAAAT TATGTTTTCA TTTACCATAT TGTCTCTGCA GGTTTTATTT TCTCATACAG 71886 .......... .......... .......... .......... .......... .......... 781 AGTACTGGTT TCCATGAGAG TCCGAACAAT TCCAGATTG 71925 | || | | | |||| | ||| ||| | | | ||| ATTAATAG-G TGCATGCTGG TCCCAACCA- --C-GGTTG 815 hqPGS_C08HBa0320P23.1+_SGN-U334955+ (65237 65576,66128 66307,66393 66488) ******************************************************************************** EST sequence 5 +strand 708 n (File: SGN-U315066+) 1 GTTGATAGTG GGTGATCAGT TATTGAAGTC TACCATAACC AATCTCCAGT GTAAGGCTAC 61 TGAATGAATA GTATAGAATG TTATCTGAGG GGGCCTTTAG AAGTTTGTTC TTTATGTTTG 121 CAGCCGCCTT CCGCATCTCC ATGCTTTCTG AATGTGCCGA GTGGGGAGAG TAATTGTTGA 181 GGCTGTACCA GCAAGGGTGG ATCGCTGCGT GGTGGCGAAG AGTCCACTTT TACCAATCAA 241 GCGTCGTCCT CTTCTCTCTA TCTCTCTTTG TTTTTGGTGT TATGTAGCTT TAGTTTCTTT 301 GAACATTTTG TGATTATATG CAGTTATGTC TAGACTTGCA CCTTCTGTTC TTCTATATAT 361 GCGACTTCCA ATTCTCTCCC GTCTGTGATG GCAATAATTG GTGCACAGCA GGAGTTACTG 421 GAGCTTAAAT TGGTTTTAGG TTGGCATCTT GAAAGTGCTG CTAGTCGGTT TAATCATGGT 481 TTGAAGAGAA TAAAACTGTA GCAAACATCG GTGGCGTTGT ATTTTAACAA AAACTTAGGC 541 ATTGTACTGT TATCACTTTG AAGCTGAGGG GTGAAATTTT TCCTTTGAGT TTTCGCATTA 601 TTATGTTTCT AATTCACTTG CCTAAAAATT CTTGAACATT GTTATAATAG CCTTCTGGTA 661 TGAACTTGTA ATATTTCACT GGTACAAAAA AAAAAAAAAA AAACTCGA Predicted gene structure (within gDNA segment 65834 to 69345): Exon 1 66434 66488 ( 55 n); cDNA 1 55 ( 55 n); score: 1.000 Intron 1 66489 67893 (1405 n); Pd: 0.796 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 67894 68546 ( 653 n); cDNA 56 708 ( 653 n); score: 0.982 MATCH C08HBa0320P23.1+ SGN-U315066+ 0.983 708 1.000 C PGS_C08HBa0320P23.1+_SGN-U315066+ (66434 66488,67894 68546) Alignment (genomic DNA sequence = upper lines): GTTGATAGTG GGTGATCAGT TATTGAAGTC TACCATAACC AATCTCCAGT GTAAGGTACT 66493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTTGATAGTG GGTGATCAGT TATTGAAGTC TACCATAACC AATCTCCAGT GTAAG..... 55 GTGCTCCGAT CCATATATGA TTTGGTAGTT TTGTACTTCC GATGGGGTGT TTGTTGACAA 66553 .......... .......... .......... .......... .......... .......... 55 CTGCACTTGT CTCGAATTGA TATATTAATT TTGGTTTAAG CGAAGTAGGA AAAAAAGTTG 66613 .......... .......... .......... .......... .......... .......... 55 GTTTACTCTT TAGTTTGGGT GGCAAGTTTT TCTCAATAAG TTTAGGTGGC ATATGTATCC 66673 .......... .......... .......... .......... .......... .......... 55 TTTTATTTTA TATTTCCTTT TTGGTCCAAG AATCTCTCCT CTAGTTTAAA GTGTATTGAG 66733 .......... .......... .......... .......... .......... .......... 55 ACCTTACTGT TGTCACTATA TAGTCAATCT GGTTGTTTCT GTTGGTGGTG GTTGCTCGAT 66793 .......... .......... .......... .......... .......... .......... 55 TCTTAAATGC CCTTGTTGTG GCGGCATTAT TATACTTTCT CCGTTGTCTT TTTCCTTTCT 66853 .......... .......... .......... .......... .......... .......... 55 TTCCAAGGAG TGAATTTTAT TCTGATGTAC TATCATCATC ATAAGAATGC TTACAAGTAG 66913 .......... .......... .......... .......... .......... .......... 55 GGGCGCGGAT TACAGTATGG GCAATGATGA AATCCATTCC CTATATAACT AATGATCCAC 66973 .......... .......... .......... .......... .......... .......... 55 TAAATGTAAT GCATGAGATC GTCCTAACAT CAGAACAAGA ATCTGGTCAT TTCAAAAACC 67033 .......... .......... .......... .......... .......... .......... 55 TTAAAGATAA TTTAGAATCT AAAGGCTAGA CAACATAGAT GTCTTAATGT GATTAATTTA 67093 .......... .......... .......... .......... .......... .......... 55 TGTAGAGGAC ATGCATGTCA ATTGGTATAC TTTAGAAGTG GCTCTGGGAT TAATAATATC 67153 .......... .......... .......... .......... .......... .......... 55 ATTAATACAC TCAGCTTTCA CTTTAGTGTA CCCAAGTCAC AAATGTTTTT ATAATGAAGT 67213 .......... .......... .......... .......... .......... .......... 55 TAGTAACTTT ACCTAAATAT CATAGAATCA CTGAACTATA TTTTTAATAA AAGTCTGTTA 67273 .......... .......... .......... .......... .......... .......... 55 CTGAGGAGAG AAGCTAAAAT TTGCCTGAAT ATCATGGAGT CGCTTAGAGG GAAACAAATA 67333 .......... .......... .......... .......... .......... .......... 55 AGACATTCTG TATGATATTT GAGTAAAGTG AATGATTCTT TTTATTACAA AACATTGTTT 67393 .......... .......... .......... .......... .......... .......... 55 AGTGACTTCT AGTGATATTT AGCCAAAGTT GAGTGACTAT TGACTTGTAA AGTACCACTT 67453 .......... .......... .......... .......... .......... .......... 55 TGTTCCTCTT GTAGTGTTTT ATTCAAGAAT TGATTGGATT TGTTTTTATG GTACATGACA 67513 .......... .......... .......... .......... .......... .......... 55 AATTTGTATT CCAATAAATC AAAAACTAGA TTGATTAGGA ATTGAGTGGC AAGTGCAATT 67573 .......... .......... .......... .......... .......... .......... 55 TACTCTTTAA GTATACCATT TATTTGACCT GTAGTACGTG GTACTGCATA TATTTTTACC 67633 .......... .......... .......... .......... .......... .......... 55 TGGATCTTTG AATTTCTCAG ATGTACGGGT GGAACTTGTT AAGTCTCGTC CCATGACGTG 67693 .......... .......... .......... .......... .......... .......... 55 ACTTCTCTTG GTGACACATT TTCCTGGGTT TATTTTATTA GTCTGGTTGG TATAGGTCTT 67753 .......... .......... .......... .......... .......... .......... 55 TACACGACTT ATTAGTACAT CTATTTGGGC CTTCCCTTTG TTGCTGTATT CTCTGTCGTC 67813 .......... .......... .......... .......... .......... .......... 55 TCTTTTGCTT CTTTTATGTG GTGGGATTTA TATATTCTAC TCTTGGTAAG TAAATGGATG 67873 .......... .......... .......... .......... .......... .......... 55 TGCAGTTTTG GTATATGCAG GCTACTGAAT GAATAGTATA GAATGTTATC TGAGGGGGCC 67933 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GCTACTGAAT GAATAGTATA GAATGTTATC TGAGGGGGCC 95 TTTAGAAGTT TGTTCTTTAT GTTTGCAGCC GCCTTCCGCA TCTCCATGCT TTCTGAATGT 67993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGAAGTT TGTTCTTTAT GTTTGCAGCC GCCTTCCGCA TCTCCATGCT TTCTGAATGT 155 GCCGAGTGGG GAGAGTAATT GTTGAGGCTG TACCAGCAAG GGTGGATCGC TGCGTGGTGG 68053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGAGTGGG GAGAGTAATT GTTGAGGCTG TACCAGCAAG GGTGGATCGC TGCGTGGTGG 215 CGAAGAGTCC ACTTTTACCA ATCAAGCGTC GTCCTCTTCT CTCTATCTCT CTTTGTTTTT 68113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGAGTCC ACTTTTACCA ATCAAGCGTC GTCCTCTTCT CTCTATCTCT CTTTGTTTTT 275 GGTGTTATGT AGCTTTAGTT TCTTTGAACA TTTTGTGATT ATATGCAGTT ATGTCTAGAC 68173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTATGT AGCTTTAGTT TCTTTGAACA TTTTGTGATT ATATGCAGTT ATGTCTAGAC 335 TTGCACCTTC TGTTCTTCTA TATATGCGAC TTCCAATTCT CTCCCGTCTG TGATGGCAAT 68233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCACCTTC TGTTCTTCTA TATATGCGAC TTCCAATTCT CTCCCGTCTG TGATGGCAAT 395 AATTGGTGCA CAGCAGGAGT TACTGGAGCT TAAATTGGTT TTAGGTTGGC ATCTTGAAAG 68293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGGTGCA CAGCAGGAGT TACTGGAGCT TAAATTGGTT TTAGGTTGGC ATCTTGAAAG 455 TGCTGCTAGT CGGTTTAATC ATGGTTTGAA GAGAATAAAA CTGTAGCAAA CATCGGTGGC 68353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGCTAGT CGGTTTAATC ATGGTTTGAA GAGAATAAAA CTGTAGCAAA CATCGGTGGC 515 GTTGTATTTT AACAAAAACT TAGGCATTGT ACTGTTATCA CTTTGAAGCT GAGGGGTGAA 68413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTATTTT AACAAAAACT TAGGCATTGT ACTGTTATCA CTTTGAAGCT GAGGGGTGAA 575 ATTTTTCCTT TGAGTTTTCG CATTATTATG TTTCTAATTC ACTTGCCTAA AAATTCTTGA 68473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTCCTT TGAGTTTTCG CATTATTATG TTTCTAATTC ACTTGCCTAA AAATTCTTGA 635 ACATTGTTAT AATAGCCTTC TGGTATGAAC TTGTAATATT TCACTGGTAC AATATGAATT 68533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || | || ACATTGTTAT AATAGCCTTC TGGTATGAAC TTGTAATATT TCACTGGTAC AAAAAAAAAA 695 TCTCTAGAAT CGA 68546 | | | ||| AAAAAAAACT CGA 708 hqPGS_C08HBa0320P23.1+_SGN-U315066+ (66434 66488,67894 68546) ******************************************************************************** EST sequence 1 +strand 876 n (File: SGN-U342949+) 1 AATAGCTGGA GCTCCCCGCG GTGGCGGCCG CTCTAGAACT AGTGGATCCC CCGGGCTGCA 61 GGAATTCGGC ACGAGTGGGA TTAATAATAT CATTAATACA CTCAGCTTTC ACTTTAGTGT 121 ACCCAAGTCA CAAATGTTTT TATAATGAAG TTAGTAACTT TACCTAAATA TCATAGAATC 181 ACTGAACTAT ATTTTTAATA AAAGTCTGTT ACTGAGGAGA GAAGCTAAAA TTTGCCTGAA 241 TATCATGGAG TCGCTTAGAG GGAAACAAAT AAGACATTCT GTATGATATT TGAGTAAAGT 301 GAATGATTCT TTTTATTACA AAACATTGTT TAGTGACTTC TAGTGATATT TAGCCAAAGT 361 TGAGTGACTA TTGACTTGTA AAGTACCACT TTGTTCCTCT TGGAGTGGTT TATTCAAGAA 421 TTGATTGGAT TTGTTTTTAT GGGACATGAC AAATTTGTAT TCCAATAAAT CAAAAACTAG 481 ATTGATTAAG AATTGAGTGG CAAGTGCAAT TTACTCTTTA AGTATACCAT TTATTTGACC 541 TGGAATACGT GGTACTGCAT ATATTTTTAC CTGGATCTTT GAATTTCTCA GATGTACCGG 601 TGGAACTTGG TAAGTCTCGT CCCATGACGT GACTTCTCTT GGTGAACATT TTCCTGGGGT 661 TATTTTATTA ATCTGGGTGG GATAGGTCTT TACACGACTT ATTAGTACAT CTATTTGGGC 721 CCTCCCTTTG GTGGCTGATT CTCTGGCGGC TCTTTGCTTC CTTATGTGGG GGGATTATAT 781 ATTCTACTCT TGGTAAGTAA TGGATGTGCA GTTTTGTATA TGCGGCTACT GAAATGATAG 841 ATAGATGTAT CTGAGGGGGC TTTAGAAGTT NGTCTT Predicted gene structure (within gDNA segment 65788 to 69944): Exon 1 67138 67943 ( 806 n); cDNA 76 870 ( 795 n); score: 0.956 MATCH C08HBa0320P23.1+ SGN-U342949+ 0.956 806 0.920 C PGS_C08HBa0320P23.1+_SGN-U342949+ (67138 67943) Alignment (genomic DNA sequence = upper lines): TGGGATTAAT AATATCATTA ATACACTCAG CTTTCACTTT AGTGTACCCA AGTCACAAAT 67197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTAAT AATATCATTA ATACACTCAG CTTTCACTTT AGTGTACCCA AGTCACAAAT 135 GTTTTTATAA TGAAGTTAGT AACTTTACCT AAATATCATA GAATCACTGA ACTATATTTT 67257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTATAA TGAAGTTAGT AACTTTACCT AAATATCATA GAATCACTGA ACTATATTTT 195 TAATAAAAGT CTGTTACTGA GGAGAGAAGC TAAAATTTGC CTGAATATCA TGGAGTCGCT 67317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAAAGT CTGTTACTGA GGAGAGAAGC TAAAATTTGC CTGAATATCA TGGAGTCGCT 255 TAGAGGGAAA CAAATAAGAC ATTCTGTATG ATATTTGAGT AAAGTGAATG ATTCTTTTTA 67377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGGGAAA CAAATAAGAC ATTCTGTATG ATATTTGAGT AAAGTGAATG ATTCTTTTTA 315 TTACAAAACA TTGTTTAGTG ACTTCTAGTG ATATTTAGCC AAAGTTGAGT GACTATTGAC 67437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAAAACA TTGTTTAGTG ACTTCTAGTG ATATTTAGCC AAAGTTGAGT GACTATTGAC 375 TTGTAAAGTA CCACTTTGTT CCTCTTGTAG TGTTTTATTC AAGAATTGAT TGGATTTGTT 67497 |||||||||| |||||||||| ||||||| || || ||||||| |||||||||| |||||||||| TTGTAAAGTA CCACTTTGTT CCTCTTGGAG TGGTTTATTC AAGAATTGAT TGGATTTGTT 435 TTTATGGTAC ATGACAAATT TGTATTCCAA TAAATCAAAA ACTAGATTGA TTAGGAATTG 67557 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TTTATGGGAC ATGACAAATT TGTATTCCAA TAAATCAAAA ACTAGATTGA TTAAGAATTG 495 AGTGGCAAGT GCAATTTACT CTTTAAGTAT ACCATTTATT TGACCTGTAG TACGTGGTAC 67617 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| AGTGGCAAGT GCAATTTACT CTTTAAGTAT ACCATTTATT TGACCTGGAA TACGTGGTAC 555 TGCATATATT TTTACCTGGA TCTTTGAATT TCTCAGATGT ACGGGTGGAA CTTGTTAAGT 67677 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| TGCATATATT TTTACCTGGA TCTTTGAATT TCTCAGATGT ACCGGTGGAA CTTGGTAAGT 615 CTCGTCCCAT GACGTGACTT CTCTTGGTGA CACATTTTCC TGGGTTTATT TTATTAGTCT 67737 |||||||||| |||||||||| |||||||||| ||||||||| |||| ||||| |||||| ||| CTCGTCCCAT GACGTGACTT CTCTTGGTGA -ACATTTTCC TGGGGTTATT TTATTAATCT 674 GGTTGGTATA GGTCTTTACA CGACTTATTA GTACATCTAT TTGGGCCTTC CCTTT-GTTG 67796 || ||| ||| |||||||||| |||||||||| |||||||||| ||||||| || ||||| || | GGGTGGGATA GGTCTTTACA CGACTTATTA GTACATCTAT TTGGGCCCTC CCTTTGGTGG 734 CTGTATTCTC TGTCGTCTCT TTTGCTTCTT TTATGTGGTG GGATTTATAT ATTCTACTCT 67856 ||| |||||| || || ||| |||||||| |||||||| | ||| |||||| |||||||||| CTG-ATTCTC TGGCGGCTC- TTTGCTTC-C TTATGTGGGG GGA-TTATAT ATTCTACTCT 790 TGGTAAGTAA ATGGATGTGC AGTTTTGGTA TATGCAGGCT ACTGAATGAA TAGTATAGAA 67916 |||||||| | |||||||||| |||||| ||| ||||| |||| |||||| | ||| |||| | TGGTAAGT-A ATGGATGTGC AGTTTT-GTA TATGC-GGCT ACTGAAATGA TAG-ATAG-A 845 TGTTATCTGA GGGGGCCTTT AGAAGTT 67943 || ||||||| ||||| |||| ||||||| TG-TATCTGA GGGGG-CTTT AGAAGTT 870 hqPGS_C08HBa0320P23.1+_SGN-U342949+ (67138 67943) ******************************************************************************** EST sequence 6 +strand 439 n (File: SGN-U315067+) 1 TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT CTTTGAACAT 61 TTTGTGATTA GATGCAGTTA TGTCGAGACT TGCACCTTCT GTTCTTCTAT ATATGCGACT 121 TCCAATTCTC TCCTGTCTGT GATGGCAATA ATTGGTGCAC AGCAGAAGTT ACTGGAGCTT 181 AAATTGGTTT TAGGTTGGGT GATGTGCGAC CAACTACGTT CCCCACCCCA CCCCCTGCCA 241 TTGAAAATAC TTTCTATTTC AAGGTGGCAT CTTAAAAGTG CCGCTAGTCG GTTTAATCAT 301 GGTTTGAAGA GAATAAAACT GTAGCAAACA TCGGTGGCGT TGTATTTTAA CAAAAGCTTA 361 GGCGTTGTAC TGTTATCACT TTAAAGCTGA GGGGTTAAAT TTTTCCTTTC TGAGTTTCAA 421 AAAAAAAAAA AAAAAACTC Predicted gene structure (within gDNA segment 67485 to 69577): Exon 1 68085 68281 ( 197 n); cDNA 1 197 ( 197 n); score: 0.980 PPA cDNA 419 437 MATCH C08HBa0320P23.1+ SGN-U315067+ 0.980 197 0.449 C PGS_C08HBa0320P23.1+_SGN-U315067+ (68085 68281) Alignment (genomic DNA sequence = upper lines): TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT CTTTGAACAT 68144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCTTCTC TCTATCTCTC TTTGTTTTTG GTGTTATGTA GCTTTAGTTT CTTTGAACAT 60 TTTGTGATTA TATGCAGTTA TGTCTAGACT TGCACCTTCT GTTCTTCTAT ATATGCGACT 68204 |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TTTGTGATTA GATGCAGTTA TGTCGAGACT TGCACCTTCT GTTCTTCTAT ATATGCGACT 120 TCCAATTCTC TCCCGTCTGT GATGGCAATA ATTGGTGCAC AGCAGGAGTT ACTGGAGCTT 68264 |||||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| |||||||||| TCCAATTCTC TCCTGTCTGT GATGGCAATA ATTGGTGCAC AGCAGAAGTT ACTGGAGCTT 180 AAATTGGTTT TAGGTTG 68281 |||||||||| ||||||| AAATTGGTTT TAGGTTG 197 hqPGS_C08HBa0320P23.1+_SGN-U315067+ (68085 68281) ******************************************************************************** EST sequence 28 +strand 1524 n (File: SGN-U320879+) 1 CAAACATGGC TTCTTCTTCT TCCTCTTCTT CTTCTTCAGT GGCTCTCAGT TTTCTCTACC 61 AAAACCCCAT TAAAGCTTCA CTCTCAATTC CAAAAGCTCT TTCTCCTTAC TCAAAACTCA 121 CATTCCCATC TATTGCGACC TTTTATTCTG CAATTCCCCG TTTCGATTAC AGTAATTTCA 181 GAAAAATCAA TCCATGTCTT CATTGCAGCA ATCTTCCTAC TGCTTCCACA AATAACACGC 241 ATTACGAGTT TTCAGATGGC TCCTCTGAGG TGGAGCTAAG ATTAGAACTT GGGCAGGGAG 301 ATGTAACTCC TAAGGATATA TATGTAGATG CAAATGAGAG CTCATTAGCA ATTAGAGTAC 361 AGCAATCTGG AATTGTTCGG ACTCTCATGG AAACCAGTAC TCTGTATGAG AAAATAAAAC 421 CTGCAGAGAC AATATGGTAC ATAGATGAAG ATCAATTAGT AATTAGCTTG AAGAAGCAAA 481 ACTCCGAGTT GAAATGGCCT GACATTGTGG AGTCTTGGGA GTCCCTAAGT GCTGGAATTA 541 CACAACTCCT TAGAGGAACA TCAATATACT TAGTTGGGGA ATCTACTGAA ATCAACCAGA 601 GGATTGCTCG AGAACTGGCT GTTGGACTAG GGTACACTCC ACTTTGTACA AAGGAGCTGC 661 TAGAAACATA TGCCAAGCAA TCAATGGAAA CGTGGGTTAA TGAGGAGGGG TCTGATGCTG 721 TAGCAGAAGC AGAAAGTGCT ATACTAGAGA GTCTGAGTAG CCAAGCCCGT GCTGTTATTG 781 CAACCTTGGG AGGGAAGAAA GGCGCTGCTG GAAAATTGAA CCAATGGAGG CATCTTTTTG 841 CTGGATTCAC AGTCTGTCTT TCCCTTTCTC AAGCTACAGA TGAAGAATCT GCAAAAGAGG 901 AGGCAAAAAG GAATATGCAA GATAGTGGTC GTGGTTACTC TAACGCGGAA GTGGTAGTCA 961 AGCTTGGAGG TTGGGATCCT AACTATTCAA AAGCAGTAGC TCAGGCTGTG CTTAGTGCCC 1021 TTAAGCGCTT AATATTGGCA GATAAAGACC TTCCAGGGAA AAAGAGTTTA TACATAAGGT 1081 TGGGCTGCCG AGGTGATTGG CCAGACATCA AACCCCCAGG CTGGGATCCA TCAACGAGCC 1141 TTGATGCATC TTCTCCGCGG TCATAACTCA TAGCAGAATC ACAGTATATG TATCTAAATG 1201 AAGCTATTTT TCTCTACCCT TAGGCTCTTG TATCAATGTA TCAAAATTAA AAAACATTCT 1261 TCTTGAGGAT ATCAAGTTGG ATATTCTCAA CATGATCTTT CTATATTAAG GGAAAGAAAA 1321 GACTAAGGTC CTGGCGTGTA TTAATTGTCC AGAAAGTTGC CATTGAGCCC CGAAGGCCAT 1381 CTGGTTAGTC AGAATTTTTT TATGGAAGAT GGTCAATTTT GTATGCTGTG AATAATTGCC 1441 ACAAATGTTG CTTATATTCA TTCTTTATTC TAATACAGTA ACACCTTTTT CATTGTTGTG 1501 ACTGAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 73835 to 68070): Exon 1 73235 72988 ( 248 n); cDNA 1 248 ( 248 n); score: 1.000 Intron 1 72987 72040 ( 948 n); Pd: 0.999 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 72039 71852 ( 188 n); cDNA 249 436 ( 188 n); score: 1.000 Intron 2 71851 71782 ( 70 n); Pd: 0.902 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 71781 71587 ( 195 n); cDNA 437 631 ( 195 n); score: 1.000 Intron 3 71586 71259 ( 328 n); Pd: 0.857 (s: 1.00), Pa: 0.863 (s: 1.00) Exon 4 71258 71197 ( 62 n); cDNA 632 693 ( 62 n); score: 1.000 Intron 4 71196 70923 ( 274 n); Pd: 0.986 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 70922 70856 ( 67 n); cDNA 694 760 ( 67 n); score: 1.000 Intron 5 70855 70775 ( 81 n); Pd: 0.992 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 70774 70656 ( 119 n); cDNA 761 879 ( 119 n); score: 0.975 Intron 6 70655 69660 ( 996 n); Pd: 0.999 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 7 69659 69483 ( 177 n); cDNA 880 1056 ( 177 n); score: 1.000 Intron 7 69482 69328 ( 155 n); Pd: 0.999 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 8 69327 68881 ( 447 n); cDNA 1057 1503 ( 447 n); score: 1.000 PPA cDNA 1505 1524 MATCH C08HBa0320P23.1- SGN-U320879+ 0.998 1503 0.986 C PGS_C08HBa0320P23.1-_SGN-U320879+ (73235 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70656,69659 69483,69327 68881) Alignment (genomic DNA sequence = upper lines): CAAACATGGC TTCTTCTTCT TCCTCTTCTT CTTCTTCAGT GGCTCTCAGT TTTCTCTACC 73176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACATGGC TTCTTCTTCT TCCTCTTCTT CTTCTTCAGT GGCTCTCAGT TTTCTCTACC 60 AAAACCCCAT TAAAGCTTCA CTCTCAATTC CAAAAGCTCT TTCTCCTTAC TCAAAACTCA 73116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACCCCAT TAAAGCTTCA CTCTCAATTC CAAAAGCTCT TTCTCCTTAC TCAAAACTCA 120 CATTCCCATC TATTGCGACC TTTTATTCTG CAATTCCCCG TTTCGATTAC AGTAATTTCA 73056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCCCATC TATTGCGACC TTTTATTCTG CAATTCCCCG TTTCGATTAC AGTAATTTCA 180 GAAAAATCAA TCCATGTCTT CATTGCAGCA ATCTTCCTAC TGCTTCCACA AATAACACGC 72996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATCAA TCCATGTCTT CATTGCAGCA ATCTTCCTAC TGCTTCCACA AATAACACGC 240 ATTACGAGGT AATTTTTTAT TTTTCATTTA AGTACATGAA TACTTTAATC ATAGACTCAC 72936 |||||||| ATTACGAG.. .......... .......... .......... .......... .......... 248 TTGGCTGCTA CGCAAAATTC ATCTTCTTTT GGGGAAAACT GTATTCTACT TTTTTGCCAC 72876 .......... .......... .......... .......... .......... .......... 248 TGACATATGC AACTTATCAT TACGTTCAAT CAAATAACAG ATTTGTTTAG TAATTAACTT 72816 .......... .......... .......... .......... .......... .......... 248 TCGTATATTT TGATTAAATG TTTTAAGTAG TACAAACACA TCTTTAAGTC TAATTATTGT 72756 .......... .......... .......... .......... .......... .......... 248 TAACGTTTAT TTGCAAATTC GAGCTACCCA AATGATGCAT ATTATATGTG GAAATTGCAT 72696 .......... .......... .......... .......... .......... .......... 248 TAATACATAT TATGTATTGT TTCATAATGT ACTGTATTGT ATCATATTGT GTTGTTTAAT 72636 .......... .......... .......... .......... .......... .......... 248 GAATACAATT GTATTGATTG TATCGTTCTC CGTCGTTACA TAATGTCACA CATTCATAAT 72576 .......... .......... .......... .......... .......... .......... 248 TTTTTGATTG GTAAACCTAC AAGAAGTTGT AGGATACGGG CAGAGTCACT ATGAAAAGGT 72516 .......... .......... .......... .......... .......... .......... 248 AGGGTACATG ATAAAAACAG AATTATTAGT AAATAATAAG TAAGAGACAA AATGAGAAGA 72456 .......... .......... .......... .......... .......... .......... 248 AAATACTAAG ATACAAAATG GGTCATTTCG TTGTTAACTA ACGATATGGA TTTAAACGAT 72396 .......... .......... .......... .......... .......... .......... 248 ACAATACAAT GGAATATAAG TAACAATCAA AATAGATATT GTACTTTAAA TAACAATACA 72336 .......... .......... .......... .......... .......... .......... 248 ATGCAATACA ACGGGTAACA ACCATCCAAA CAAGGTGCAA GTCTACATAG TAACCTGTAT 72276 .......... .......... .......... .......... .......... .......... 248 CCAACAAAAT ATTTTGTTCT TGGTATTTGT TTGTGAAATT TACCTCCACG AGGTAGGGGT 72216 .......... .......... .......... .......... .......... .......... 248 GATGTCTGCA TACACTCTAC CTTAACCGAG ACCGCACATG TGGAATTTCA CTGTGCGTGT 72156 .......... .......... .......... .......... .......... .......... 248 TGTTCTTATT GTATTTGGTA GTAAACTTTT AAGATAGTAT CAACTACCTG TAAACTTTGC 72096 .......... .......... .......... .......... .......... .......... 248 TATTATTCAG AATGAGTTTG CTTCTCTTTT CCGACCAATT TGTGGAACTT ATGCAGTTTT 72036 |||| .......... .......... .......... .......... .......... ......TTTT 252 CAGATGGCTC CTCTGAGGTG GAGCTAAGAT TAGAACTTGG GCAGGGAGAT GTAACTCCTA 71976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATGGCTC CTCTGAGGTG GAGCTAAGAT TAGAACTTGG GCAGGGAGAT GTAACTCCTA 312 AGGATATATA TGTAGATGCA AATGAGAGCT CATTAGCAAT TAGAGTACAG CAATCTGGAA 71916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATATATA TGTAGATGCA AATGAGAGCT CATTAGCAAT TAGAGTACAG CAATCTGGAA 372 TTGTTCGGAC TCTCATGGAA ACCAGTACTC TGTATGAGAA AATAAAACCT GCAGAGACAA 71856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCGGAC TCTCATGGAA ACCAGTACTC TGTATGAGAA AATAAAACCT GCAGAGACAA 432 TATGGTAAAT GAAAACATAA TTTTAGTGAA TCTGTTTTAT CCTTTTGCAA CGTTTTATGA 71796 |||| TATG...... .......... .......... .......... .......... .......... 436 AACAAATCGT GTAGGTACAT AGATGAAGAT CAATTAGTAA TTAGCTTGAA GAAGCAAAAC 71736 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTACAT AGATGAAGAT CAATTAGTAA TTAGCTTGAA GAAGCAAAAC 482 TCCGAGTTGA AATGGCCTGA CATTGTGGAG TCTTGGGAGT CCCTAAGTGC TGGAATTACA 71676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGAGTTGA AATGGCCTGA CATTGTGGAG TCTTGGGAGT CCCTAAGTGC TGGAATTACA 542 CAACTCCTTA GAGGAACATC AATATACTTA GTTGGGGAAT CTACTGAAAT CAACCAGAGG 71616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTCCTTA GAGGAACATC AATATACTTA GTTGGGGAAT CTACTGAAAT CAACCAGAGG 602 ATTGCTCGAG AACTGGCTGT TGGACTAGGG TATGTTCCTC ACTTTCATGA GTAAATGATA 71556 |||||||||| |||||||||| ||||||||| ATTGCTCGAG AACTGGCTGT TGGACTAGG. .......... .......... .......... 631 ATGCTGCATA AAGTGACGGA GCTACAGTAT TTCGTATATG CCATATATTA GTCCTCTTTC 71496 .......... .......... .......... .......... .......... .......... 631 ACCGAACCTA GGTGAAAAGA GATGAATGGA TCATGATAAA TAGCCTGAAT GGTGGTTTTC 71436 .......... .......... .......... .......... .......... .......... 631 CTTAAAAATC TGTTTTTTTG ACTTGACAAA AGATATGGAT TAGTTATAAT TTTCCTTCTT 71376 .......... .......... .......... .......... .......... .......... 631 CCACATTCAT GATCGTCCAT TTGCATTAAG TTACTGCAAC CCCTGCACCC TTGGGATTCT 71316 .......... .......... .......... .......... .......... .......... 631 TGCTTGCTTC TTTAGTCAAG ATCTTCTAAA TTTTCGTTCA ACTCTTATGG TGGTTAGGTA 71256 ||| .......... .......... .......... .......... .......... .......GTA 634 CACTCCACTT TGTACAAAGG AGCTGCTAGA AACATATGCC AAGCAATCAA TGGAAACGTG 71196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CACTCCACTT TGTACAAAGG AGCTGCTAGA AACATATGCC AAGCAATCAA TGGAAACGT. 693 TGAGTTACAT CCATTTTTCT TTTCACAGAG AAGATAATTA TTGTTAAACA ATAAGTTTTA 71136 .......... .......... .......... .......... .......... .......... 693 CAAGGAAGAG CAATAGAAAA AGAATTGTTT ACATGGAAGA TCTGAATTCT CACAACTGCA 71076 .......... .......... .......... .......... .......... .......... 693 CAATGATAAA TATTGGAATT TGAACATGTG TCAATGATGC TCACTGGAAC AATTTATTTA 71016 .......... .......... .......... .......... .......... .......... 693 CTTTCTCCAA AACATCTAAA GGCATAGTAG CTCTTTGTTT GGCTTCACTT CCTTTTTCTT 70956 .......... .......... .......... .......... .......... .......... 693 TTCTTTATTC AATTTTTCTC TAACCAATTC CAGGGGTTAA TGAGGAGGGG TCTGATGCTG 70896 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GGGTTAA TGAGGAGGGG TCTGATGCTG 720 TAGCAGAAGC AGAAAGTGCT ATACTAGAGA GTCTGAGTAG GTATTTACTT TGTCTTGCAT 70836 |||||||||| |||||||||| |||||||||| |||||||||| TAGCAGAAGC AGAAAGTGCT ATACTAGAGA GTCTGAGTAG .......... .......... 760 ATCTTACTCA TTTCACTTGG AACTGGAAGT AAAAATGTAT TTATATTTGA TTCTTGTTTA 70776 .......... .......... .......... .......... .......... .......... 760 GCCAAGCCCG TGCTGTTATT GCAACCTTGG GAGGGAAGAA AGGCGCTGCT GGAAGAGTGA 70716 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| | ||| .CCAAGCCCG TGCTGTTATT GCAACCTTGG GAGGGAAGAA AGGCGCTGCT GGAAAATTGA 819 ACCAATGGAG GCATCTTTTT GCTGGATTCA CAGTCTGGCT TTCCCTTTCT CAAGCTACAG 70656 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ACCAATGGAG GCATCTTTTT GCTGGATTCA CAGTCTGTCT TTCCCTTTCT CAAGCTACAG 879 GTTAGGAAAC TAAGCTCTCT CTCCCCTTCT TTTGGATGTA CAGTATGTTT TACAAGCCTA 70596 .......... .......... .......... .......... .......... .......... 879 TCTATTGTTA TATCGCTTTT TTTTCCGTCC ATGTGTTTCC AATCCCCTTC TTTAGATAGT 70536 .......... .......... .......... .......... .......... .......... 879 CGAGCAGTGT CAGAATACGT AGTTATTACA ACTTTTTCTT TTTTTGAGCA AGGAATGAAG 70476 .......... .......... .......... .......... .......... .......... 879 AACTTAAGTG TACATCATAA ATCAGCTGAC AAACTGCTCT GCTTGCATGT GGCATCATAA 70416 .......... .......... .......... .......... .......... .......... 879 ATTGGTATTT GTGGTGAATG CTTCTCTGAA TCGACTCAAG GGAAGTGGTA AAATTCCTTA 70356 .......... .......... .......... .......... .......... .......... 879 GTTGACAGGC CAATATAGGT ATGTACATGT GGACTACAAA TAAGGTGGGA AAAAAAAATC 70296 .......... .......... .......... .......... .......... .......... 879 ACAAAAACTA GTCCCCTTCT GGGAATATCA GTTTTTGCAG AAAAGTAGTA TATTTTCTTT 70236 .......... .......... .......... .......... .......... .......... 879 ATCTGATTAT TTTTGAGTCT TTCAATTCCT AGAAACATCT CTCTACTGTT GATACTATAT 70176 .......... .......... .......... .......... .......... .......... 879 AACTTACACA GAGAAAGAGA TAACAAATGG ACATGAAAAT AGGAACTGAG GTAGAAACAA 70116 .......... .......... .......... .......... .......... .......... 879 GGTTCTCCTG ATTCTAAGTG CTTCTGTGAA CCCCTATGTG AACCAAACTT AGTAGACAAC 70056 .......... .......... .......... .......... .......... .......... 879 TGTAGGAAGA AACCCAAAAT TGGCATTATA TTATCACTGA GTAACACCAC TTAGAATCAC 69996 .......... .......... .......... .......... .......... .......... 879 TGGTTAACAC CTGATCAAGT GCGGATAATT GATCATTAAA CTGAGAGCAA CTGGAGTAAG 69936 .......... .......... .......... .......... .......... .......... 879 CAAGGAGCAT CAAAAGTAAA TGGGGCTTCA ACTTTCAAGT CCATGTTGAA ATTTTGTAGG 69876 .......... .......... .......... .......... .......... .......... 879 AACGTGACAT CACCTCTCTT GCAACACGGG GACCAGACTG GGGGTATAGC AAACAGTATC 69816 .......... .......... .......... .......... .......... .......... 879 CTTTGGAGGA TTCCATACAT ACAGTACAAC CCATTAAGAA ACCCTTCTTT GTTGTGCTGA 69756 .......... .......... .......... .......... .......... .......... 879 AACAGTTCAC ACCTACCAAG TGCACCACCA AATTATAATG GGAGTTTTTG TCATATTTCT 69696 .......... .......... .......... .......... .......... .......... 879 TAAGCTTGTC TTTGTCTTTG CTAATATCAA TTTCAGATGA AGAATCTGCA AAAGAGGAGG 69636 |||| |||||||||| |||||||||| .......... .......... .......... ......ATGA AGAATCTGCA AAAGAGGAGG 903 CAAAAAGGAA TATGCAAGAT AGTGGTCGTG GTTACTCTAA CGCGGAAGTG GTAGTCAAGC 69576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAGGAA TATGCAAGAT AGTGGTCGTG GTTACTCTAA CGCGGAAGTG GTAGTCAAGC 963 TTGGAGGTTG GGATCCTAAC TATTCAAAAG CAGTAGCTCA GGCTGTGCTT AGTGCCCTTA 69516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGGTTG GGATCCTAAC TATTCAAAAG CAGTAGCTCA GGCTGTGCTT AGTGCCCTTA 1023 AGCGCTTAAT ATTGGCAGAT AAAGACCTTC CAGGTACGCT AAGCTTCATG CTTTGTTCTA 69456 |||||||||| |||||||||| |||||||||| ||| AGCGCTTAAT ATTGGCAGAT AAAGACCTTC CAG....... .......... .......... 1056 TTCTTAGTTG TCCACAAATG AACTTTGAGT TTGTTGTGGA TATAAAATGA ACCCATCCTG 69396 .......... .......... .......... .......... .......... .......... 1056 TGGCATGAAC CAGAAGTCTA CACAAGCTTG TCATATGTTC TTTACTGTTA TTTTGTTCTG 69336 .......... .......... .......... .......... .......... .......... 1056 CTCTGAAGGG AAAAAGAGTT TATACATAAG GTTGGGCTGC CGAGGTGATT GGCCAGACAT 69276 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GG AAAAAGAGTT TATACATAAG GTTGGGCTGC CGAGGTGATT GGCCAGACAT 1108 CAAACCCCCA GGCTGGGATC CATCAACGAG CCTTGATGCA TCTTCTCCGC GGTCATAACT 69216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACCCCCA GGCTGGGATC CATCAACGAG CCTTGATGCA TCTTCTCCGC GGTCATAACT 1168 CATAGCAGAA TCACAGTATA TGTATCTAAA TGAAGCTATT TTTCTCTACC CTTAGGCTCT 69156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGCAGAA TCACAGTATA TGTATCTAAA TGAAGCTATT TTTCTCTACC CTTAGGCTCT 1228 TGTATCAATG TATCAAAATT AAAAAACATT CTTCTTGAGG ATATCAAGTT GGATATTCTC 69096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATCAATG TATCAAAATT AAAAAACATT CTTCTTGAGG ATATCAAGTT GGATATTCTC 1288 AACATGATCT TTCTATATTA AGGGAAAGAA AAGACTAAGG TCCTGGCGTG TATTAATTGT 69036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATGATCT TTCTATATTA AGGGAAAGAA AAGACTAAGG TCCTGGCGTG TATTAATTGT 1348 CCAGAAAGTT GCCATTGAGC CCCGAAGGCC ATCTGGTTAG TCAGAATTTT TTTATGGAAG 68976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAAAGTT GCCATTGAGC CCCGAAGGCC ATCTGGTTAG TCAGAATTTT TTTATGGAAG 1408 ATGGTCAATT TTGTATGCTG TGAATAATTG CCACAAATGT TGCTTATATT CATTCTTTAT 68916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCAATT TTGTATGCTG TGAATAATTG CCACAAATGT TGCTTATATT CATTCTTTAT 1468 TCTAATACAG TAACACCTTT TTCATTGTTG TGACT 68881 |||||||||| |||||||||| |||||||||| ||||| TCTAATACAG TAACACCTTT TTCATTGTTG TGACT 1503 hqPGS_C08HBa0320P23.1-_SGN-U320879+ (73235 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70656,69659 69483,69327 68881) ******************************************************************************** EST sequence 19 +strand 2089 n (File: SGN-U315404+) 1 ATTTTTGATT ATATATAGAA AAAAATATGG GTTATTTACA AGTTTTTATT ACATCATTTT 61 TGTCAATTTC TTGTGTTAGT ATTTTCATGC CAAACTTGGT AGATGCTCAA CTCAAAACCA 121 ATTTTTATGC CCAAACTTGT CCTAATGTTG AATCCATTGT GCGTAATGTT GTTAACCAGA 181 AATTCAAACA AACGTTTGTC ACAATTCCGG CTGTTCTTCG TCTTTTCTTC CATGATTGCT 241 TTGTTGAGGG TTGTGATGCA TCGGTGATAA TAGCATCAAC GGCAGGGAAC ACAGCAGAAA 301 AAGATCACCC AGATAATCTT TCATTGGCTG GAGATGGATT TGACACAGTT ATCAAAGCAA 361 AAGCCGCAGT TGATGCGATC CCAAGTTGTA AAAATAAAGT TTCTTGTGCT GATATTCTTG 421 CCTTAGCCAC TCGAGATGTT ATTCAACTAT CCGGTGGACC GGGGTATGCA GTGGAATTGG 481 GGAGATTAGA TGGTTTGACA TCAAAATCTA CAAATGTAGG GGGAAAGTTG CCTAAACCTA 541 CTTTCAATTT GGATCAACTC AATACAATGT TTGCCTCTCA TGGTTTAAAT CAGGCTGATA 601 TGATTGCCTT ATCTGCGGCC CATACTGTTG GATTTTCTCA CTGCGACCAA TTCTCGAACC 661 GAATTTTCAA CTTTAACCCT AAAAACCCAG TGGATCCAAG TCTCAACAAG ACGTATGCAG 721 CCCAATTAGA ACAAATGTGT CCGAAAAATG TGGACCCAAG AATAGCCATC AACATGGACC 781 CAATAACACC TAGGGCTTTT GACAATGTGT ATTTCCAAAA CTTGCAAAAC GGAATGGGCC 841 TATTCACATC AGATCAAGTT TTGTTCACAG ACCAAAGGTC TAAAGGTACT GTTAATTTGT 901 GGGCCAGTAA TTTTAAAGTT TTTGAAACCG CATTTGTTAA TGCGATGACT AAATTGGGCC 961 GAGTTGGTGT GAAGACGGGT AAGAATGGAA ATATTCGTAT AGACTGTGGA GCATTTAATT 1021 AAGGGCAACT TTCACGTATA GCAAATAAAA AATTCATATT TGTATGTTAT AACAAAGTTT 1081 GCATAATTGC GCTCCATAGC AAACATAAAA CTGTATAATT CGCTATACAT ATACAATTGT 1141 ATAATTCGCT GGCCTAAATT GTATAATTTG ATGGCCTATT TCGCTGCAAT TGTATAATTC 1201 GCTATCTTCA TTCACTGCGA TTGTGTAATG CACAATCGTA TAAATCGCTG CTTATTTCGC 1261 TGCAATATTT TTATAAATTT GCTTTGCATA CCGTTGAATC GAATTAAAAT GTATGTATAT 1321 TGCATAATTA TAAGTGTATG GCAAGAATAT ATATGTTTTT GTCTCGCTTT ATACAAAAAC 1381 AAAAACACAA TATATACACT TCTGTTGTAT AAAGTTAGAG AAAATTGTAT TTCACTGCAA 1441 TTATATAATT CACAATTGTA TAATTCGTTG GCCTTTTTCT CTGCAATATT TGAAGTAAAA 1501 TGTTTGTAAT TTGTATAATT AAGTGTATAA CACGAAGATA TATATTTTTA CATGTGTATA 1561 TACAATTTTC TCTCGCTTTA TACAAAATAG AAACAGAATT TATACACTTC TGTGTATATA 1621 GCGAGATAGG CGAGCGAGAA TGGAGAGTGG CGAGCGAGAT TTTTGGGAGG GAGACGCCTG 1681 ACAAACTTTA GCTAACGTTT GCTATGGAGC ACAATTAAAT CAAACTCTAG CTACTCCATT 1741 TAGTTAGATT ACTAGTTTGC TATTATATAC AATTTTCCCA AGAGCTTGTA TAAAATGGAG 1801 AGAAGGAAAA AGATTTAGAA TTATCGCTTG TGAATGACAA GAAAAGATTG CAAAATAAGA 1861 ATTTAGTTGT TTTGCTTTAA TAAGTTCCTT AATCATTTCA TTAGGGGTGT AATAATAGAA 1921 TAAGAAAAGG GGCTTGAAAT TCAGCTATAA ACAACCAGGG CATAGGTAAC GTGTATACTT 1981 GATGTTATAG GTGAAATTTC AGCTTCTCAA TTTCGATTAA TTAACATTAT ATATATATAT 2041 ATATATTCCC CCAGTATCAC ATTTGATAGG AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 84572 to 69570): Exon 1 84320 84311 ( 10 n); cDNA 978 987 ( 10 n); score: 0.800 Intron 1 84310 79631 (4680 n); Pd: 0.900 (s: 0), Pa: 0.637 (s: 0) Exon 2 79630 79615 ( 16 n); cDNA 988 1001 ( 14 n); score: 0.625 Intron 2 79614 77932 (1683 n); Pd: 0.000 (s: 0), Pa: 0.667 (s: 0) Exon 3 77931 77921 ( 11 n); cDNA 1002 1011 ( 10 n); score: 0.727 Intron 3 77920 74336 (3585 n); Pd: 0.031 (s: 0), Pa: 0.000 (s: 0.80) Exon 4 74335 73863 ( 473 n); cDNA 1012 1491 ( 480 n); score: 0.792 Intron 4 73862 73831 ( 32 n); Pd: 0.053 (s: 0.70), Pa: 0.000 (s: 0.86) Exon 5 73830 73489 ( 342 n); cDNA 1492 1810 ( 319 n); score: 0.766 Intron 5 73488 73457 ( 32 n); Pd: 0.000 (s: 0.64), Pa: 0.513 (s: 0) Exon 6 73456 73427 ( 30 n); cDNA 1811 1838 ( 28 n); score: 0.667 Intron 6 73426 73250 ( 177 n); Pd: 0.000 (s: 0), Pa: 0.750 (s: 0) Exon 7 73249 73228 ( 22 n); cDNA 1839 1857 ( 19 n); score: 0.727 Intron 7 73227 71168 (2060 n); Pd: 0.382 (s: 0), Pa: 0.292 (s: 0) Exon 8 71167 71139 ( 29 n); cDNA 1858 1886 ( 29 n); score: 0.655 Intron 8 71138 70835 ( 304 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 9 70834 70808 ( 27 n); cDNA 1887 1912 ( 26 n); score: 0.704 Intron 9 70807 70165 ( 643 n); Pd: 0.037 (s: 0), Pa: 0.991 (s: 0.56) Exon 10 70164 70117 ( 48 n); cDNA 1913 1957 ( 45 n); score: 0.562 PPA cDNA 2071 2089 MATCH C08HBa0320P23.1- SGN-U315404+ 0.781 1008 0.483 C PGS_C08HBa0320P23.1-_SGN-U315404+ (84320 84311,79630 79615,77931 77921,74335 73863,73830 73489,73456 73427,73249 73228,71167 71139,70834 70808,70164 70117) Alignment (genomic DNA sequence = upper lines): GGTAAAAGTG GTAACCTTTT TTGGTGTTCA CCCGCGAGAA TCACGCCTTG TATTATGCGG 84261 ||||| | || GGTAAGAATG .......... .......... .......... .......... .......... 987 TTCTTGTAAG AGGTGCTTTT CACTTAGGTC CCTGAAGTTT GGGGAAGTGA CACTTTGATA 84201 .......... .......... .......... .......... .......... .......... 987 CACACTTTTG GTTAAAGTCA AGAAACACCA TCTTTTCATT ATTATTTTCT TTGTTTAAGG 84141 .......... .......... .......... .......... .......... .......... 987 TATTTAAGTT GAATACAATG AAACAATAGA TATGATTACA TGTTTTATTG GGTCGAAAGC 84081 .......... .......... .......... .......... .......... .......... 987 ACGGCATCAA AAATGATTAT TAAGGATAAT TAATTTCCAT TTATTGTTAA ATATATATTT 84021 .......... .......... .......... .......... .......... .......... 987 TTAGCAGCAA TTAATACTTT TTATATATAT GTCCCTTAGT GATATTGATT CTAATGACAC 83961 .......... .......... .......... .......... .......... .......... 987 TTAACTAATG TCGGTAACAC TTTAGCACTA TTTATTAATA TCTATATTTA TTGCTGCTAA 83901 .......... .......... .......... .......... .......... .......... 987 ATTGTTTTTT TTACGGTGAG TGAGGAGTAC AAAACCTCTA TTTGACTACT TTGCACTTGA 83841 .......... .......... .......... .......... .......... .......... 987 AATGAGGGAA AAAAGAGAAA GGGGAAATCA CTCTTACCCT CTATTTTCCT TCCTACATAA 83781 .......... .......... .......... .......... .......... .......... 987 ATTTTTCTGT ACAAATGGAG AAGGCTAGAT TAACATTTTA AAATGGAACA TCGAATTTTT 83721 .......... .......... .......... .......... .......... .......... 987 AATAATAAAA CAAAAATTTA AATAGTCAAT TAACTGAACT ATCATATTCT TTCATTTTTC 83661 .......... .......... .......... .......... .......... .......... 987 TTCCACCACT TAATTAGTGG ATGAGATGAG AGTCATGGAC TCATGATGAT AACAATTATT 83601 .......... .......... .......... .......... .......... .......... 987 GATAAAAGGT TAAAGCCTTC CACTTTTAGT ATATACCAAA GAACAAGATA TACATTAAGT 83541 .......... .......... .......... .......... .......... .......... 987 TTAAAAGTCC TTTTGGTGCT TCACTTAATT AGTTTTAATT TGCTCTAAAA TGTGCCACAT 83481 .......... .......... .......... .......... .......... .......... 987 ACACCCACCT TTAGAAGGCT ATGCCATTGT CTATATATGA TATGAATGGA ATTGCAACTT 83421 .......... .......... .......... .......... .......... .......... 987 TAATAATATA GCAACTCATC ATCCTAATTT TCTTATATAT TCAACAATCA TAGTCCATTA 83361 .......... .......... .......... .......... .......... .......... 987 TATTACCATG TGACTATTGG AATATTATAT TGTTTGGGTA CATGAGAATT TAGACTTAAA 83301 .......... .......... .......... .......... .......... .......... 987 AGTAGATACG TCTATAAAAA AAAATATCTT TCTAAATTTA ATAGCAATTC AATCGTAAAC 83241 .......... .......... .......... .......... .......... .......... 987 ATTTTATTTT ATAATTAATG AGATCATTCA CATATAAATA TTTATAAACT TTTCATATCA 83181 .......... .......... .......... .......... .......... .......... 987 TAATTTTTTT TTAAAAAAAT AATCTCAAAT AACGTATTTA ATCAAATAAT ATCATATACA 83121 .......... .......... .......... .......... .......... .......... 987 TTGCAATAGT GAGAGTTCTT TATTATAAAG GGACCTATAG GTGGGAGCTT TGTTCTCTTG 83061 .......... .......... .......... .......... .......... .......... 987 AGGTTTTAGC TTAATTTTGT TGAAACATTA TCATGTGATC TTTCCTTAAT GCTACTACTA 83001 .......... .......... .......... .......... .......... .......... 987 AGTACTCTTT TTTAACTTTT AATTAAGAAG AGAAAGTGGA AGTTCCTTTG TCTCCACTAT 82941 .......... .......... .......... .......... .......... .......... 987 TTTATTGATA TATGTATATA TTATTGAATT TTACTTTAAT ACATTATTAT GAAGAAAAAT 82881 .......... .......... .......... .......... .......... .......... 987 TAAATACTAA AATATATAAC TTAATAAGAG AAATTTGATA AACACAACAA AAATAGTTTC 82821 .......... .......... .......... .......... .......... .......... 987 TAATTTTTTA GACTTTATAC CCTATTAAAC GATCTCATAT AAATTGAAAC AATGAAAATT 82761 .......... .......... .......... .......... .......... .......... 987 AACCGAACGC TTACAAGAAT TTCGAATGTA TAAACTGGGG TCCTATTATA CCTTCATTTT 82701 .......... .......... .......... .......... .......... .......... 987 TCTTCCTTTC AATATACAAT TTCCAAGGAA AAGATATCAG TTTATTATAC AGTAGATACT 82641 .......... .......... .......... .......... .......... .......... 987 CCTAGTACTA GTCAAAAAGA TAAGAAAAGT AGTACACAAA ATCAATTAGA TTTCATTGTT 82581 .......... .......... .......... .......... .......... .......... 987 TCCTTTACAA GAATAATATA ATATTACTCC TGTATATACT CTTAAGAAAT AAAGATTTCA 82521 .......... .......... .......... .......... .......... .......... 987 TTTTACTAGT CTAATTTAAT AAATTAAGAT TTTTTTTATA AAAAAATAAC CATCATTGTT 82461 .......... .......... .......... .......... .......... .......... 987 AAGATTAGTT TTAAAAAAAA CATAATTTTT AATTTTAATT TTTTTAAAAT ATATGTCAAA 82401 .......... .......... .......... .......... .......... .......... 987 TCAATAGAGT AATATATGAA ATGGAAAAAG TATCACTAGT AACTCCAAAT TAGGCATCTT 82341 .......... .......... .......... .......... .......... .......... 987 TGTGTTTTGT CTCTGTTATA CTTGATGACT TCACTTCTGC TGCTGTTTGT TTTTTTTTTA 82281 .......... .......... .......... .......... .......... .......... 987 TTTTTTATTT TTTGGAATAA AACATAATAA ATGTGAGCCA TGAAAGGAAT AATCAGAAAA 82221 .......... .......... .......... .......... .......... .......... 987 AATAAACTCA ATAAAATATA TAATAATCAC ATAAGGGAAT ATTTTTATCA AGCACTTTCA 82161 .......... .......... .......... .......... .......... .......... 987 TGTAGTACAT TATAAAGTAG CCTGCGTTTA CACTTTATCT TTATGTTTTA TGCATTAACG 82101 .......... .......... .......... .......... .......... .......... 987 ACTTAAATTA GTATTTATTT AAGCAATTAA TCAAAGTAAG TTTCTATTTA CTTGTTCACT 82041 .......... .......... .......... .......... .......... .......... 987 TTTAAATTAA TATTACTATT AAGAAAATAT TTTCTTCGTC CGGTATTATT TGTCTTAGTT 81981 .......... .......... .......... .......... .......... .......... 987 TTTATTTTTA GAGTCAAATT ATAAAAAATT TGACTAACAT TTTAAGATGC ATTTTTTCAT 81921 .......... .......... .......... .......... .......... .......... 987 CATATTAATA TGAAAAAATT GTAATTGATA GTACTTTTCA TATAGTTTTG GAATCTCTAA 81861 .......... .......... .......... .......... .......... .......... 987 TTTTTTTTGT TTGAAATATC GAATTAATGT ATCTAATTTA CCTTTGAAAA TTAGTCAAAT 81801 .......... .......... .......... .......... .......... .......... 987 TAACTTTCGA TAAGCGTAAC ATGACAAACA TTTCTCGACG GAGGGAGTAA TTATTGACAT 81741 .......... .......... .......... .......... .......... .......... 987 ATAAAATTTA CCATTTTACC CCTATAAATT ATGAACTGAA TGAACTAAAA ATTTAAAATT 81681 .......... .......... .......... .......... .......... .......... 987 TTTAAAAAAT TCTACTTTTT CAATGTAATT AGCTGAGGGT ACAATGGGTA AAAGATATTT 81621 .......... .......... .......... .......... .......... .......... 987 GTCTCGTCTA AATTTATCAA AATGAACAAG TAATTAGGAA TAACTAAAAA GAAAAAAATG 81561 .......... .......... .......... .......... .......... .......... 987 GATAAATAAT TAGAGGACAG AGAGAGTATA AAGTTAATGA TGCACATATT TGTTGATTAA 81501 .......... .......... .......... .......... .......... .......... 987 GCAATGATAA CATGAACTAC TTTTATCTTT TACAAAAGCT GAGATTCCTC TCAATAAAAA 81441 .......... .......... .......... .......... .......... .......... 987 AATTTAATTA AAAATTTGAA ATTTATGAAT TTTTATGACG ATTTTAAATT AATTTTATAA 81381 .......... .......... .......... .......... .......... .......... 987 TAGTAATTTA ACTTGCAATC AAATATTTAT AGATATTCAG TTAATTTGTT AATGTATATC 81321 .......... .......... .......... .......... .......... .......... 987 AATAAAGGTC ATTGCCATTG AAGAGAATAA CTTTTTTCTA TCATGCATGC ATGCACACAA 81261 .......... .......... .......... .......... .......... .......... 987 GATGAAAAGA AAAGTAAATT TTGAGAAAAA GATGACATAT CTTTTTTATT TACTTTTAGT 81201 .......... .......... .......... .......... .......... .......... 987 TAATTTTAAA CCTTTCTTTT CCCAACTTTT TCTTACTTTG CTCTCATTTC ACTAATCATA 81141 .......... .......... .......... .......... .......... .......... 987 TTCTTTTTGG GTTGATAGAA ATAAAAGTTG CACCCAACCT ATATGAAGAA GCCACATCAA 81081 .......... .......... .......... .......... .......... .......... 987 CTACTAAAAC AACATTGGAA AAAAAAATCA AAATAATTCA TTTTACATGT TGTATAATAT 81021 .......... .......... .......... .......... .......... .......... 987 TTTACACTAT CAAGTTAACT GTAATAATAA ATCAAAATTA TTTATGACAA TTCTGATACG 80961 .......... .......... .......... .......... .......... .......... 987 ATAATTTTAA ATAACATTTC AATCACAATA TTATAAAAAT TCTTTACACT GTCGAACAAC 80901 .......... .......... .......... .......... .......... .......... 987 TAGTGCCCTC TTTGCTTTTG GCACAAAAAC TAATTTCCAC AAATATAGGT CCATCATTAT 80841 .......... .......... .......... .......... .......... .......... 987 TTACTAGGGT TTAGCATTCA CCCTAAGACC CTTTTGGCTA TAAAAGAAAT ACAAATTCAT 80781 .......... .......... .......... .......... .......... .......... 987 TTTTTTGGGA ATAATTTTTT ATAATAGCAT ATGAAATTTC ACCATGAAGA TTTATAATAG 80721 .......... .......... .......... .......... .......... .......... 987 CATATAAAAG TTCACCATGA ATATTCCTTT CATCTTGTTG AACAAACTTT CTTGAACATT 80661 .......... .......... .......... .......... .......... .......... 987 CTTCATTTTC GATCAGAGGC AGATGCAGGA TTTAGAGTCT CTGAGTGTCA ACTAAATTCA 80601 .......... .......... .......... .......... .......... .......... 987 TCTATTATAT CAATTTAGAC TTTGGATCAA AATATTCATC AACCATCAAT TCCTCTGATG 80541 .......... .......... .......... .......... .......... .......... 987 TATCTCCAGA TGACAAATTG TCGAATACTT CAGATTGGCC TAAAATATAT TCAATGAAAA 80481 .......... .......... .......... .......... .......... .......... 987 AAATTAAAAT TAAAATTTGG TTCTTGACAT AACAAAAAGT TAATAAGGAC TCAATTTTTT 80421 .......... .......... .......... .......... .......... .......... 987 TTTAGAGAAT TAAATAGCTA CAATAATAAT TTAATCATAT GCTAAGAGGT GAATAATTAA 80361 .......... .......... .......... .......... .......... .......... 987 CCTGAAGAAG CTGATCTATC AGTTGTCTTT ACAGTCCGAT ACATCTGCAA GATATATGAG 80301 .......... .......... .......... .......... .......... .......... 987 AAAATTTCGT TAATAGCATT ATTTGTGACA ATAATTTATT TGTTTTTTTT ATGTGGTACG 80241 .......... .......... .......... .......... .......... .......... 987 TATATAGTTT AAAAAGATAA AAAAGACGTT TGAATTATAT GATTTTAAAT TAAAGATATG 80181 .......... .......... .......... .......... .......... .......... 987 TCAAATATAT TAAAATATCT ATTAATTTTA CAATTTTAAA CATGTCACAC ATGAATATAA 80121 .......... .......... .......... .......... .......... .......... 987 AAATTGTAAA AAAAATAAGA TATTCTTTTT TTGGGAGTGT GCATAAATAA CATGTACTAG 80061 .......... .......... .......... .......... .......... .......... 987 TACTTAATAC TATTACAAAT GACCAATTAC ATGAAGTTCT TGAAAGTTGA AACTGTTTTC 80001 .......... .......... .......... .......... .......... .......... 987 TGTGTTGCTA ACAATTTTTT ATAAAGATAT GGAGATATCA TTGAGATATG ATCACTGTGT 79941 .......... .......... .......... .......... .......... .......... 987 CATGTACTAG TACAGCAGTA CTTCCTTTCT CCAAAAATAT AAAAAACTAA AAAAATATAG 79881 .......... .......... .......... .......... .......... .......... 987 TAACTTACTA GTAGATTCAA TTACAAATTC GATTTTGCAA TATGAGTGAA ATCTATCCGT 79821 .......... .......... .......... .......... .......... .......... 987 ATATTCTAGC AAAATTTAGA GGTATTTTAA ACCATTTTTT CGGTTTTTAA TAATAGAATC 79761 .......... .......... .......... .......... .......... .......... 987 TCATGCTTAT ATAAGAGTTT GAAATTACTT TGTTATGTCC AGATGTGAAA ACATGATTTG 79701 .......... .......... .......... .......... .......... .......... 987 ACGATTTTGG ATGCACAAAT GTTACCTTAG CTCAAATATG AGCTCTTAGA TAAACTTTAA 79641 .......... .......... .......... .......... .......... .......... 987 ATAAAAACAG TGAAATAAAC ACTCTAGCTG GATTAAACTC AAGGGCCAGG TCTCTTAGGT 79581 |||||| | | || .......... -GAAATATTC -GTATA.... .......... .......... .......... 1001 AGATCCTCTA GCTTGTACTA GCAACACAAT GACACTCCTA TATTTTTCAT GGGTGCATTG 79521 .......... .......... .......... .......... .......... .......... 1001 GTAATTAAAT CTTAATTTCT GTCAGTTTTT CAAGATATAT ATAAATATAT ATGCATAATT 79461 .......... .......... .......... .......... .......... .......... 1001 TTTCTAAAGT TAACGGATGA ACGTACACCC CTCCTAGAGG GATGGTCCAC TTCCGACTAT 79401 .......... .......... .......... .......... .......... .......... 1001 GTCATCAAGA TATATATATA TATATATATA AAAATTTTTC TGAAAGTTAA TAAATACACA 79341 .......... .......... .......... .......... .......... .......... 1001 TACACTTCAC CTTGAGAATT AATCTGCTTC TGGCTATATC ATGTTGTAAA TTGAGGTTTT 79281 .......... .......... .......... .......... .......... .......... 1001 CGAATGGATT TATAAGAAAA TAGTGTTAAC TTATTTTCCT TGTCCACCTG ATGTAATTAT 79221 .......... .......... .......... .......... .......... .......... 1001 TGATGAATCA TTATATGAAG GAGACTTTTT CTCCTCTCTC CTCTAATTGA ACTCACCCTT 79161 .......... .......... .......... .......... .......... .......... 1001 TTTAACTTTT ACAAGTACTA TTCCTTTCAC ACTACACATG AATGGATGTT TGGTTCTCCC 79101 .......... .......... .......... .......... .......... .......... 1001 AAAGTATATA AAAAGAAAAA AAAAAGCTGC ATAAAGAAAG CCTGGCATTG CAAAGGAAAA 79041 .......... .......... .......... .......... .......... .......... 1001 AGATAGCATT GGAATTTGAA ATGTAGAATC AAAACCTTTT TTTTTCTTCA AAAATCACTT 78981 .......... .......... .......... .......... .......... .......... 1001 AATTAAACAC ATTAAAACAA CTTCATATAA AAGAAAATTA ATATGGCGAA AACAATTTTT 78921 .......... .......... .......... .......... .......... .......... 1001 AGCAGCATAA ATATGCATAT TGTCAATAAG TATAAAAAAA TTTATCAGTA ATAGTCAATT 78861 .......... .......... .......... .......... .......... .......... 1001 TTGTCATTAG ATTTAATATT ATTATAAATT TTAGAGACAT TTACAAAAAA ATGTCAAATG 78801 .......... .......... .......... .......... .......... .......... 1001 CCTCTAAAAA TATACTTGAC TACAATTAAA CTATTACTGT TGACTAGTTA CCGCTAAAAA 78741 .......... .......... .......... .......... .......... .......... 1001 ATCATTTTAA TTTGATGTAG TGGCATACTA AGGAAAAATA ATTAGTAAGA TGTTTAGAAA 78681 .......... .......... .......... .......... .......... .......... 1001 AATTACCTGT AAATGGGATT TAACATGTGC TAAGGTGAGA TCTTTGACAT CCATAAGCTC 78621 .......... .......... .......... .......... .......... .......... 1001 AAGAACTGAT TTTGGTGTTG CTCCTAAAGA CCCCCCAAAA AAACAAAAAA CATCATATAT 78561 .......... .......... .......... .......... .......... .......... 1001 TCACCATTAT TTTACTTGGT TAACAATGAG TTTAAATTAA GTAAAAAGAA AATATAGCTT 78501 .......... .......... .......... .......... .......... .......... 1001 TCCTTTTCCT ATCATAGTCT ATTCGATAGA AAATCGAGTA CTTCTTGATC GTGAATATCT 78441 .......... .......... .......... .......... .......... .......... 1001 AAACTAGTCT TAAATCATAA CCATAGAGTA TGACATATAT AAGAACTACT CAAGGTACTT 78381 .......... .......... .......... .......... .......... .......... 1001 TGAAACAGAA ACAACAATTA TTGGAACACC AACAACTAGT CAGCTACTAA AAAATGAGCT 78321 .......... .......... .......... .......... .......... .......... 1001 CTCATCATGT GAACTTTATG TCAGTTCTTT GTCGCTCTGA TTCGTTAAAT TGAAGAAAAG 78261 .......... .......... .......... .......... .......... .......... 1001 GAGATCGAAC ACTACAAGAA AACTGCGAAT TATATGGCTA TTTTCCTGGA AATTAATATG 78201 .......... .......... .......... .......... .......... .......... 1001 AAAATTTTCA GGAAAATAAG TTTCATGCGA ATTTTCATAC TAATCCCCGT TGTAATTTAC 78141 .......... .......... .......... .......... .......... .......... 1001 AGTTTTCTTG TAGTGAAACC ATCATGAAAT TCAAAGTGCA CAAGGGATAT GAAGAAGCTT 78081 .......... .......... .......... .......... .......... .......... 1001 ACTTTCATGG CCACCCAAGA GTTCAACAGC ATGAACAAAA TGAGCATGGA GAGTACTTGT 78021 .......... .......... .......... .......... .......... .......... 1001 CCAACGCATC CTTGGAGCCC TAGTGCTCCG TTTAGTCGAA TATCTTGATA AAAATCTTGA 77961 .......... .......... .......... .......... .......... .......... 1001 TCTAAAAAAC CCTCCTTGTT GAAAATTAGG TCTAGTAGAG GCACAAGAAC TAATTGTGTT 77901 | || || ||| .......... .......... .........G ACT-GTGGAG .......... .......... 1011 CTTAATATTA TTATTGTTGA TAATAGAACA AGGTGAACAA GTTATAGGAA ATGTAGTAGT 77841 .......... .......... .......... .......... .......... .......... 1011 AGTAGTAGTA TTAAAGGGCT TTTGATGATA CACCGGAATG CCTCTTATTA TAGTTTGATT 77781 .......... .......... .......... .......... .......... .......... 1011 TTGTTGTGAG ATGTTGTAAT TTTGGAGATT ATGTAAATGA TGGGAAGAAT TAGGGTTAGG 77721 .......... .......... .......... .......... .......... .......... 1011 TTTAGTTGGA TTATTGGATA AAGAAAGGTC AAAACAAGAA GAAGAAGAAG TGTTAATAGG 77661 .......... .......... .......... .......... .......... .......... 1011 ATTTGTTGAT TCCACCACAT GAGCTCTTTT ACAAAACCCT AAATCCATAT GAATATCATC 77601 .......... .......... .......... .......... .......... .......... 1011 TTCACTTGTA ATTTTCCTCT TCCATGTTGA TGATGAAGGT TTGATGTTTG GTGGGCTAAT 77541 .......... .......... .......... .......... .......... .......... 1011 TTTTAGGGAT AAGTCTGGTT GTGCTGGGAA TAGTTCCATA TATCCTTGTT ACTTCTTTCT 77481 .......... .......... .......... .......... .......... .......... 1011 ACGTGGCACT GTTCAAATTT CGAGAGTCTG AAAAAAAAAA ATTTTAGTAC ATACCTAGAT 77421 .......... .......... .......... .......... .......... .......... 1011 TCAATTTTTT TTTTCTCTCC ACCCCTTTTT CTTCTTCTCC TCTTTGTTGC TCTCTAGGTT 77361 .......... .......... .......... .......... .......... .......... 1011 TTCTTTATTT TGGCTAGTTG TTTTTTTTTT TTTAGCTATA TGATATGTAT ATACACTAGA 77301 .......... .......... .......... .......... .......... .......... 1011 AGATGGATTA TTTTTGAGAA AATTAAAGAT ATAGGAGGAG GGAGAGAAAA TTGTGGATTT 77241 .......... .......... .......... .......... .......... .......... 1011 TTCCTTTGGG ATTTGAGGTC ATTTGTAGGG ATTTGAGATT GAGAAATAAG AGAAAGGAGG 77181 .......... .......... .......... .......... .......... .......... 1011 TAGAAGAAAG GACAAAGTAT AAATGAAGTG AGTGGTTGTT TTTTTTGTTT TTTTTGTTGA 77121 .......... .......... .......... .......... .......... .......... 1011 GTGGTTGATT TTTTTTGGTG TGTGAGAGGT TGTATATCTT AGAAAATGAC ACTTGAGGGG 77061 .......... .......... .......... .......... .......... .......... 1011 GCTAGTGTGG GGGAGAGGTT GGTAGAGTGG GGTTATTTCA TTTCACCGGG TGAATAAAAT 77001 .......... .......... .......... .......... .......... .......... 1011 TCAAAATTTA TATTTTATGA GTTTTGAATT TTAAGAAAAG ATAAATTTAT TTCATATATA 76941 .......... .......... .......... .......... .......... .......... 1011 CTTCTTAAAA TTAATTATTT ATTTTTTAAA ATTTAATACT AAACATCAAT TTATATGAAT 76881 .......... .......... .......... .......... .......... .......... 1011 AATATAGCAA AATAATCATG TTATCATATT TTTTTCAAAA GATATGTAAA ATTAAAGTGG 76821 .......... .......... .......... .......... .......... .......... 1011 ACTTAAAAAT GAACAAATCA ACTACTAATA TAATAAGAAA AAAAATAATG CGGACTTATA 76761 .......... .......... .......... .......... .......... .......... 1011 ATTTTTATGA GACGTGAAAA TGTGATGGAG TAATAGTCTA TTCATTTACT TGTCATAATT 76701 .......... .......... .......... .......... .......... .......... 1011 TGACTTGACA CATTTATTAA GAAAATAACG ATTGATATAA TGAATTTATT ATTTTATTTT 76641 .......... .......... .......... .......... .......... .......... 1011 TATTAATTAA TAGAATCTCA AATATATTTA CTCATTATAT TTTTTAAAGG CATCAACTCA 76581 .......... .......... .......... .......... .......... .......... 1011 ATGTTAATAA ATTAAAAGTA TAATTAAAAA ACCATTATTC CACAATTTGT TAAATGTGAC 76521 .......... .......... .......... .......... .......... .......... 1011 AAGAAAAAGT AGAAATTAAA AAAAAGTATT TGATAAGTAA ATCATGATGG AGAAAGTATG 76461 .......... .......... .......... .......... .......... .......... 1011 TAAAGGGGGC GCATATTTTA CTATTCTTTT TTGGATTCTT ATTCATCATT TGGAATTCAC 76401 .......... .......... .......... .......... .......... .......... 1011 GTTGAAACTT CGATTTAGTA AAATATATTT AGATACAATA TTTAATAAGA ATTTTTATAT 76341 .......... .......... .......... .......... .......... .......... 1011 ATTTAAAATT TAAATTTAAA ATTTTTAATT AAAAATAATA TAAATATTCT AATAAAAAAA 76281 .......... .......... .......... .......... .......... .......... 1011 TTTTCATACT TAAATTTTAA ATTCAAAATT TTTAATTAAA AATAAAGCAA TCACAACGCC 76221 .......... .......... .......... .......... .......... .......... 1011 ATAATCAATG TTGACGGTAT TTTTCATTTT ATAAGGGTTG GTGGCCGGAC AACCACAGAA 76161 .......... .......... .......... .......... .......... .......... 1011 TTTCTAGACC TATATACACA CATGAAATGA TTTTGCATAA ATTCCCATAT TGTACCAATA 76101 .......... .......... .......... .......... .......... .......... 1011 ATGAAACTTA CTAATCACCA ATTTATGATG AATTATTTCG AGTCCATATT CAAAAAGGGT 76041 .......... .......... .......... .......... .......... .......... 1011 GAACTATTTT GAGAAGTTTG TATACAAAAT TTTCGAAGTT TAAATTTTTG AATTTAATTT 75981 .......... .......... .......... .......... .......... .......... 1011 TACTAATTAA TGAATCACGA TGAACTATTT TGAGTTCAAA TTTAAAAACG GTGAACTATT 75921 .......... .......... .......... .......... .......... .......... 1011 TTGAGAAGTT TGTATGCAAA GTTTTTGAAG TTTGATATTT TGAATTTAAT TTTGAGGTAT 75861 .......... .......... .......... .......... .......... .......... 1011 TTTTGAGACA CGTGGTGTCT AAGGAGAATA TCAAAGTGAA TTCGTCTGAA TAGAGGCAGT 75801 .......... .......... .......... .......... .......... .......... 1011 TAGAGGTTGG ACTAGGCCTA CTTTAGTTAC TGAAATACGA AATTTCATAT AATTTAAAGT 75741 .......... .......... .......... .......... .......... .......... 1011 TCAAATTTAA AAATAATGAA CTATATTAAG TTTTTGTAAA AATAAATTAA AACTTACTCA 75681 .......... .......... .......... .......... .......... .......... 1011 TTATCTCAGA ATATCAATTT TCACAATTAA GTATAAATTT ATAACAATAA ACAATAATGA 75621 .......... .......... .......... .......... .......... .......... 1011 TTTACTTTCA ATTATATGGC TAAAATATAG ATATTTATAA ATCTTCCTGA GATATCTACT 75561 .......... .......... .......... .......... .......... .......... 1011 TTCACTCGAT ACACAAGTTT TAAGAAGCAA ATGATATATC CAAATTATGT AAATTATCTG 75501 .......... .......... .......... .......... .......... .......... 1011 ATTTTCTATA TTTAGTTACA AAATTTCACG GTACACACAT GCCTCATAAT AGGAAGATTT 75441 .......... .......... .......... .......... .......... .......... 1011 GTTTCGACTA CAAAGGAAAA TTCTCCAAAC AAATAATAAT ATAAAAATAG ACCCTACAAA 75381 .......... .......... .......... .......... .......... .......... 1011 AATAAAAAGA CATACTCTTG TCTTTATGGA TTTCATTTAT TATGATTCAA TTACTTAAAC 75321 .......... .......... .......... .......... .......... .......... 1011 TCAATCCTAT TGTGTGTGGT TTGATTCAAT TATGTATTTT CAATTGATTT CATAACTTGA 75261 .......... .......... .......... .......... .......... .......... 1011 GAATTGTGCT TTTGAGGTTG AGGAAAGAAA AGTTGTAAGC GGAATTCTCC AAGTGTGAAT 75201 .......... .......... .......... .......... .......... .......... 1011 ATGTGCTTGA TTTTGAGGCA TTTTTGGAAT ACGTGGTTTC CAAAGTGGAT ATTGGGTGAA 75141 .......... .......... .......... .......... .......... .......... 1011 TTCATCCAAG GTTGAGGCAG TTAGGGGTTG GACGAGGCTT ACTATAATTA TTGAGGTTCA 75081 .......... .......... .......... .......... .......... .......... 1011 AAATTTCATG CAATTGATAA CCTATGACAA ACATCACTCC ACCATAACTT TGATCACCAA 75021 .......... .......... .......... .......... .......... .......... 1011 ATATGATTAA TGAAATAGTA ACTGTCACAC TCTTATTATC CAAACAATAT ATAACTGTCA 74961 .......... .......... .......... .......... .......... .......... 1011 CTCTACCACA ATCCTGATCA CAAAACATGA CTAATGAAGT AATAATGGTC ACACTCTCAT 74901 .......... .......... .......... .......... .......... .......... 1011 TATCCAAACA ATGTATATTT GACATAGGTG TAGGATCCTC CTATTATAAG ACTGACCAAA 74841 .......... .......... .......... .......... .......... .......... 1011 TTAGCCAAAA AGTTGGAAAC ATATTGAATT TTTCTTGAGA CTTTTATCAA GTGAACCTTA 74781 .......... .......... .......... .......... .......... .......... 1011 TAGAAAATCC TCAATATATC TTATGATAAA AACTCATTGG ATTATCCTCC TTTTTATTTT 74721 .......... .......... .......... .......... .......... .......... 1011 GATAAGACCC CATTAATTAA TTAACTTTTA GTTATGAGCA ACTCAATACA ATTAACAGTT 74661 .......... .......... .......... .......... .......... .......... 1011 CAATTTTGTA AAGGGTAAAA TCAAAATCTT CTACTATGTG GTATCTATAG CTCATTGGTC 74601 .......... .......... .......... .......... .......... .......... 1011 ATAGTTTGTC TTTATTTACC TCTAAAAATA TTCTGTTTCT TTTCTCGCCC ATAGTTTTCT 74541 .......... .......... .......... .......... .......... .......... 1011 CTTATTTTTC TCAAAATTCC ATGCTCATGG CAAAAAAAAA AACAAGAAAT GACACTACTA 74481 .......... .......... .......... .......... .......... .......... 1011 GGATATTTGG GCCTACAATA CACAGTAGTA CAATCAAATA TTTTGTTTTC CGTTCATTTT 74421 .......... .......... .......... .......... .......... .......... 1011 AATTTATATG ACGTAATATA CTTTAAGATA AACTTTTAAA AAATTATTAA TACTGTTTAC 74361 .......... .......... .......... .......... .......... .......... 1011 ATAATTACTT CATTTTATCG CTGCACATAA AATGAAGGGC AATTTTCACA TATAACAAAC 74301 ||| ||| |||||| || |||||| |||| |||| .......... .......... .....CATTT AATTAAGGGC AACTTTCACG TATAGCAAAT 1046 AAAAATATTA TATTTATATG TTATAACAAA GTTTGCATAA TTGCACTCTA TAGCAAACAT 74241 ||||| | | ||||| |||| |||||||||| |||||||||| |||| ||| | |||||||||| AAAAAATTCA TATTTGTATG TTATAACAAA GTTTGCATAA TTGCGCTCCA TAGCAAACAT 1106 ATAAATGTAT AATTCGC--- ACA-AT---- -TGTATAATT CGCTGGCCCA AATTATATAA 74190 | || ||||| ||||||| ||| || ||||||||| |||||||| | |||| ||||| AAAACTGTAT AATTCGCTAT ACATATACAA TTGTATAATT CGCTGGCCTA AATTGTATAA 1166 TTCGCTGGTC TCACTATACA TATACAATTG TATGATTTGC TGGCTTATTT CACTGCAATT 74130 || | ||| | | | | | | | |||||| ||| ||| || | ||| || |||||| ||| TTTGATGGCC T-A-T-TTC- GCTGCAATTG TATAATTCGC TATCTTCATT CACTGCGATT 1222 GTATAATGCA CAATTGTATA ATTTACTGAC CTATTTCGCT GCAGTATTTA TATAAAATTT 74070 || ||||||| |||| ||||| | | ||| | ||||||||| ||| ||||| ||| |||||| GTGTAATGCA CAATCGTATA AATCGCTG-C TTATTTCGCT GCAATATTTT TAT-AAATTT 1280 GTTTCGCATA CAATTGAATC GAAGTAAAAT GTTTGTATAT TGTATAATTA TAAGTGTATA 74010 | || ||||| | ||||||| ||| |||||| || ||||||| || ||||||| ||||||||| GCTTTGCATA CCGTTGAATC GAATTAAAAT GTATGTATAT TGCATAATTA TAAGTGTATG 1340 GGAAGAAGAT ATATGTTTTT CTCTCGCTTT ATACAAAAAC AGAAACACAA TTTATACACT 73950 | ||||| || |||||||||| ||||||||| |||||||||| | |||||||| | |||||||| GCAAGAATAT ATATGTTTTT GTCTCGCTTT ATACAAAAAC AAAAACACAA TATATACACT 1400 TTTGTTATAT AAAGCAAGAG AAAATTGTAT TTCACTGCAA TTGTATAATT CACAATTG-- 73892 | |||| ||| |||| |||| |||||||||| |||||||||| || ||||||| |||||||| TCTGTTGTAT AAAGTTAGAG AAAATTGTAT TTCACTGCAA TTATATAATT CACAATTGTA 1460 T-ATTCGCTG GCC-TTTTCG CTGCAGTATT TGTATAAAAT TTACATTTGT ATACAATTGA 73834 | ||||| || ||| ||||| ||||| |||| | TAATTCGTTG GCCTTTTTCT CTGCAATATT T......... .......... .......... 1491 ATCGAAGTAA AATATTTGTA AATTGTATAA TTAAGTGCAT TGCACAAAAA TATATGTTTT 73774 ||||||| ||| |||||| | |||||||| ||||||| || ||| || | ||||| |||| ...GAAGTAA AATGTTTGTA ATTTGTATAA TTAAGTGTAT AACACGAAGA TATATATTTT 1548 TGCATGTGTA TATACAATTT TTTCTCGCTT TATACAAAAC AGAAACACAA TTTATAGACT 73714 | |||||||| |||||||||| | |||||||| ||||||||| ||||||| || |||||| ||| TACATGTGTA TATACAATTT TCTCTCGCTT TATACAAAAT AGAAACAGAA TTTATACACT 1608 TCTGTTGTAT AAAGCGAGAG AGGCGGGTAG AGGGAGAGTG GCGAGCGAGA ATAGTAGAAT 73654 |||| ||||| | ||| ||| | | | | |||||||||| || | ||| | TCTG-TGTAT ATAGC--GAG A------T-- ------A--G GCGAGCGAGA AT-GGAGAGT 1648 GGCCAGCAAG AGTTTTGGGA GAGAGGTGAC TGGCAAACTT TGACAAACGT TTGCTATGAG 73594 ||| ||| || | |||||||| | ||| | | || ||||||| | | ||||| |||||||| GGCGAGCGAG ATTTTTGGGA GGGAGACGCC TGACAAACTT TAGCTAACGT TTGCTATGGA 1708 ACATAATTAA ATCAAACAGT AGTTATTTCA TTTATTTTAG GTTATTAATT TACTATTATA 73534 || |||||| ||||||| | || || | || |||| |||| ||| || || | |||||||| GCACAATTAA ATCAAACTCT AGCTACTCCA TTTA-GTTAG ATTACTAGTT TGCTATTATA 1767 TACAATTATT TCTAAAATAA ATATTTCAAA TTCTTAAAAA TAAAATTATA ATAATAAAAA 73474 ||||||| || | || | | | | ||| | | || |||| TACAATT-TT CCCAAGA-GC TTGTATAAAA TGGAGAGAAG GAAAA..... .......... 1810 TAATGTTATT CTTTTAGAGA TGGAGAATAA TATTACATGT AAAGTACATG GAAATTGTGA 73414 ||| | ||||| ||| | ||| || || .......... .......AGA TTTAGAAT-- TATCGCTTGT GAATGAC... .......... 1838 TAATTTTGTT CACGATATAG CTCAAAAAAT ACATCGTGCA AGAATTTAAA ATTTTGAAAG 73354 .......... .......... .......... .......... .......... .......... 1838 TAGTTCAAAT TAACGGGAGC TATTTGTAAT TTTATCAAAC TAAGGGGAGC TATATGCAAA 73294 .......... .......... .......... .......... .......... .......... 1838 TTCTTTAAAA GCCTATATTT CTTATCTGCT CCATTTTTTC TCAGAAGAAA CAGAGAAGCA 73234 |||||| ||| ||| .......... .......... .......... .......... ....AAGAAA -AGA-TTGCA 1852 AACATGGCTT CTTCTTCTTC CTCTTCTTCT TCTTCAGTGG CTCTCAGTTT TCTCTACCAA 73174 || || AA-ATA.... .......... .......... .......... .......... .......... 1857 AACCCCATTA AAGCTTCACT CTCAATTCCA AAAGCTCTTT CTCCTTACTC AAAACTCACA 73114 .......... .......... .......... .......... .......... .......... 1857 TTCCCATCTA TTGCGACCTT TTATTCTGCA ATTCCCCGTT TCGATTACAG TAATTTCAGA 73054 .......... .......... .......... .......... .......... .......... 1857 AAAATCAATC CATGTCTTCA TTGCAGCAAT CTTCCTACTG CTTCCACAAA TAACACGCAT 72994 .......... .......... .......... .......... .......... .......... 1857 TACGAGGTAA TTTTTTATTT TTCATTTAAG TACATGAATA CTTTAATCAT AGACTCACTT 72934 .......... .......... .......... .......... .......... .......... 1857 GGCTGCTACG CAAAATTCAT CTTCTTTTGG GGAAAACTGT ATTCTACTTT TTTGCCACTG 72874 .......... .......... .......... .......... .......... .......... 1857 ACATATGCAA CTTATCATTA CGTTCAATCA AATAACAGAT TTGTTTAGTA ATTAACTTTC 72814 .......... .......... .......... .......... .......... .......... 1857 GTATATTTTG ATTAAATGTT TTAAGTAGTA CAAACACATC TTTAAGTCTA ATTATTGTTA 72754 .......... .......... .......... .......... .......... .......... 1857 ACGTTTATTT GCAAATTCGA GCTACCCAAA TGATGCATAT TATATGTGGA AATTGCATTA 72694 .......... .......... .......... .......... .......... .......... 1857 ATACATATTA TGTATTGTTT CATAATGTAC TGTATTGTAT CATATTGTGT TGTTTAATGA 72634 .......... .......... .......... .......... .......... .......... 1857 ATACAATTGT ATTGATTGTA TCGTTCTCCG TCGTTACATA ATGTCACACA TTCATAATTT 72574 .......... .......... .......... .......... .......... .......... 1857 TTTGATTGGT AAACCTACAA GAAGTTGTAG GATACGGGCA GAGTCACTAT GAAAAGGTAG 72514 .......... .......... .......... .......... .......... .......... 1857 GGTACATGAT AAAAACAGAA TTATTAGTAA ATAATAAGTA AGAGACAAAA TGAGAAGAAA 72454 .......... .......... .......... .......... .......... .......... 1857 ATACTAAGAT ACAAAATGGG TCATTTCGTT GTTAACTAAC GATATGGATT TAAACGATAC 72394 .......... .......... .......... .......... .......... .......... 1857 AATACAATGG AATATAAGTA ACAATCAAAA TAGATATTGT ACTTTAAATA ACAATACAAT 72334 .......... .......... .......... .......... .......... .......... 1857 GCAATACAAC GGGTAACAAC CATCCAAACA AGGTGCAAGT CTACATAGTA ACCTGTATCC 72274 .......... .......... .......... .......... .......... .......... 1857 AACAAAATAT TTTGTTCTTG GTATTTGTTT GTGAAATTTA CCTCCACGAG GTAGGGGTGA 72214 .......... .......... .......... .......... .......... .......... 1857 TGTCTGCATA CACTCTACCT TAACCGAGAC CGCACATGTG GAATTTCACT GTGCGTGTTG 72154 .......... .......... .......... .......... .......... .......... 1857 TTCTTATTGT ATTTGGTAGT AAACTTTTAA GATAGTATCA ACTACCTGTA AACTTTGCTA 72094 .......... .......... .......... .......... .......... .......... 1857 TTATTCAGAA TGAGTTTGCT TCTCTTTTCC GACCAATTTG TGGAACTTAT GCAGTTTTCA 72034 .......... .......... .......... .......... .......... .......... 1857 GATGGCTCCT CTGAGGTGGA GCTAAGATTA GAACTTGGGC AGGGAGATGT AACTCCTAAG 71974 .......... .......... .......... .......... .......... .......... 1857 GATATATATG TAGATGCAAA TGAGAGCTCA TTAGCAATTA GAGTACAGCA ATCTGGAATT 71914 .......... .......... .......... .......... .......... .......... 1857 GTTCGGACTC TCATGGAAAC CAGTACTCTG TATGAGAAAA TAAAACCTGC AGAGACAATA 71854 .......... .......... .......... .......... .......... .......... 1857 TGGTAAATGA AAACATAATT TTAGTGAATC TGTTTTATCC TTTTGCAACG TTTTATGAAA 71794 .......... .......... .......... .......... .......... .......... 1857 CAAATCGTGT AGGTACATAG ATGAAGATCA ATTAGTAATT AGCTTGAAGA AGCAAAACTC 71734 .......... .......... .......... .......... .......... .......... 1857 CGAGTTGAAA TGGCCTGACA TTGTGGAGTC TTGGGAGTCC CTAAGTGCTG GAATTACACA 71674 .......... .......... .......... .......... .......... .......... 1857 ACTCCTTAGA GGAACATCAA TATACTTAGT TGGGGAATCT ACTGAAATCA ACCAGAGGAT 71614 .......... .......... .......... .......... .......... .......... 1857 TGCTCGAGAA CTGGCTGTTG GACTAGGGTA TGTTCCTCAC TTTCATGAGT AAATGATAAT 71554 .......... .......... .......... .......... .......... .......... 1857 GCTGCATAAA GTGACGGAGC TACAGTATTT CGTATATGCC ATATATTAGT CCTCTTTCAC 71494 .......... .......... .......... .......... .......... .......... 1857 CGAACCTAGG TGAAAAGAGA TGAATGGATC ATGATAAATA GCCTGAATGG TGGTTTTCCT 71434 .......... .......... .......... .......... .......... .......... 1857 TAAAAATCTG TTTTTTTGAC TTGACAAAAG ATATGGATTA GTTATAATTT TCCTTCTTCC 71374 .......... .......... .......... .......... .......... .......... 1857 ACATTCATGA TCGTCCATTT GCATTAAGTT ACTGCAACCC CTGCACCCTT GGGATTCTTG 71314 .......... .......... .......... .......... .......... .......... 1857 CTTGCTTCTT TAGTCAAGAT CTTCTAAATT TTCGTTCAAC TCTTATGGTG GTTAGGTACA 71254 .......... .......... .......... .......... .......... .......... 1857 CTCCACTTTG TACAAAGGAG CTGCTAGAAA CATATGCCAA GCAATCAATG GAAACGTGTG 71194 .......... .......... .......... .......... .......... .......... 1857 AGTTACATCC ATTTTTCTTT TCACAGAGAA GATAATTATT GTTAAACAAT AAGTTTTACA 71134 |||| || || || | ||| ||||| .......... .......... ......AGAA TTTAGTTGTT TTGCTTTAAT AAGTT..... 1886 AGGAAGAGCA ATAGAAAAAG AATTGTTTAC ATGGAAGATC TGAATTCTCA CAACTGCACA 71074 .......... .......... .......... .......... .......... .......... 1886 ATGATAAATA TTGGAATTTG AACATGTGTC AATGATGCTC ACTGGAACAA TTTATTTACT 71014 .......... .......... .......... .......... .......... .......... 1886 TTCTCCAAAA CATCTAAAGG CATAGTAGCT CTTTGTTTGG CTTCACTTCC TTTTTCTTTT 70954 .......... .......... .......... .......... .......... .......... 1886 CTTTATTCAA TTTTTCTCTA ACCAATTCCA GGGGTTAATG AGGAGGGGTC TGATGCTGTA 70894 .......... .......... .......... .......... .......... .......... 1886 GCAGAAGCAG AAAGTGCTAT ACTAGAGAGT CTGAGTAGGT ATTTACTTTG TCTTGCATAT 70834 .......... .......... .......... .......... .......... .........C 1887 CTTACTCATT TCACTTGGAA CTGGAAGTAA AAATGTATTT ATATTTGATT CTTGTTTAGC 70774 |||| ||||| ||| || | || || CTTAATCATT TCA-TTAGGG GTGTAA.... .......... .......... .......... 1912 CAAGCCCGTG CTGTTATTGC AACCTTGGGA GGGAAGAAAG GCGCTGCTGG AAGAGTGAAC 70714 .......... .......... .......... .......... .......... .......... 1912 CAATGGAGGC ATCTTTTTGC TGGATTCACA GTCTGGCTTT CCCTTTCTCA AGCTACAGGT 70654 .......... .......... .......... .......... .......... .......... 1912 TAGGAAACTA AGCTCTCTCT CCCCTTCTTT TGGATGTACA GTATGTTTTA CAAGCCTATC 70594 .......... .......... .......... .......... .......... .......... 1912 TATTGTTATA TCGCTTTTTT TTCCGTCCAT GTGTTTCCAA TCCCCTTCTT TAGATAGTCG 70534 .......... .......... .......... .......... .......... .......... 1912 AGCAGTGTCA GAATACGTAG TTATTACAAC TTTTTCTTTT TTTGAGCAAG GAATGAAGAA 70474 .......... .......... .......... .......... .......... .......... 1912 CTTAAGTGTA CATCATAAAT CAGCTGACAA ACTGCTCTGC TTGCATGTGG CATCATAAAT 70414 .......... .......... .......... .......... .......... .......... 1912 TGGTATTTGT GGTGAATGCT TCTCTGAATC GACTCAAGGG AAGTGGTAAA ATTCCTTAGT 70354 .......... .......... .......... .......... .......... .......... 1912 TGACAGGCCA ATATAGGTAT GTACATGTGG ACTACAAATA AGGTGGGAAA AAAAAATCAC 70294 .......... .......... .......... .......... .......... .......... 1912 AAAAACTAGT CCCCTTCTGG GAATATCAGT TTTTGCAGAA AAGTAGTATA TTTTCTTTAT 70234 .......... .......... .......... .......... .......... .......... 1912 CTGATTATTT TTGAGTCTTT CAATTCCTAG AAACATCTCT CTACTGTTGA TACTATATAA 70174 .......... .......... .......... .......... .......... .......... 1912 CTTACACAGA GAAAGAGATA ACAAATGGAC ATGAAAATAG GAACTGAGGT AGAAACA 70117 | ||| ||| | ||| || | |||| | || | | || || .........T AATAGA-ATA AGAAAAGGGG CTTGAAAT-T CAGCT-ATAA ACAACCA 1957 hqPGS_C08HBa0320P23.1-_SGN-U315404+ (74335 73863,73830 73489,73456 73427,73249 73228,71167 71139,70834 70808) ******************************************************************************** EST sequence 18 +strand 1136 n (File: SGN-U325194+) 1 TCGCTTATAG ACTCCTATGG AAGAAGACAA AAGTAGTAAC ACCATTGAAC CCCAAAAGGG 61 AGCTCAAGAA CTCCCTTTTG ATTGGCCCAA ACAAGCATGG ACACATTTCG AATTAGTTCG 121 TCAAAAATCC CCATTAATTC AATGTATAAC CAACTTCGTT TCAATGGATT TCATGGCCAA 181 TACTCTGTTA TCCGCCGGCG CATCACCGGC GATGATTCAT TCCGTTGAAG AAATCCCAGA 241 ATTTACTCCA AAAGCCCTTG GAGTTTGCAT AAATGCCGGA ACCCTCACTC CGGACTGGCT 301 ACCCGGTATG AAATTAGCGG CACAAGTGGC GAATCAATCG AAAAAACCTT GGGTGCTTGA 361 TCCTGTTGCT GCCGGTGGGT CAAGTTTCCG GTTAAAGGCG TGTTTGGAGC TACTTGCTTT 421 AAAACCTAGT GTTGTTAGAG GCAATGGGTC TGAGATTCTT GCTCTTTTCA AGGGTTGTGT 481 TGACTCAAAT TCCAAGGGTG TGGATAGTGT ACATGGTTCA AGTGATGCTG TTGAAGCTGC 541 TAAGTCCATC GCTCAACAAA GTGGTAGTGT AGTCGCTGTT TCTGGAGCTG TTGACTATAT 601 CACAGACGGT GATAGGGTTG TTTGTGTTCA CAATGGGGTG CCTATGTTGC AAAAGATTAC 661 TGCATCTGGA TGTTCAGTCA CTGCCCTCAT TGCTGCCTTT GTCGCTGTTG ATCCATCCCA 721 TGCTGTGGAA GCAACAGCTT CTGCATTGGC TATATTTGGT GTCGCAAGTG AAACAGGGAT 781 GGACATGGCT AGAGGTCCAG CTTCACTGCG GACACTGTTG ATTGATTCGT TATATGGACT 841 TGGGGAAGCT ACTGCACTTA GTCGAGTAAG AATCAACCAC CTTTAATGCT TTTAGACGAG 901 AAATCAATGT GTCCATTTCA TTTAAATCTA ACTCTCATTT ATTTTTGGGC AACTTTTTTC 961 ACATACAGCA AACAAAAAAT TCATATTTGT ATGCTATAGC AAACTTCGCA TAATTGCGTT 1021 CCATAGCAAA CATAAAATTG TATAATTCGC TATACATATA CAATTGTATA ATTCGCTATC 1081 CTATTTCACT GCAATTGTAT AATGCACAAT TGTATAATTC GCTGCCTAAA AAAAAA Predicted gene structure (within gDNA segment 85266 to 73327): Exon 1 84316 84311 ( 6 n); cDNA 906 911 ( 6 n); score: 0.833 Intron 1 84310 81890 (2421 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 81889 81853 ( 37 n); cDNA 912 946 ( 35 n); score: 0.676 Intron 2 81852 80645 (1208 n); Pd: 0.000 (s: 0), Pa: 0.804 (s: 0) Exon 3 80644 80637 ( 8 n); cDNA 947 954 ( 8 n); score: 0.625 Intron 3 80636 74320 (6317 n); Pd: 0.775 (s: 0), Pa: 0.000 (s: 0.80) Exon 4 74319 74224 ( 96 n); cDNA 955 1050 ( 96 n); score: 0.833 Intron 4 74223 74176 ( 48 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.90) Exon 5 74175 74097 ( 79 n); cDNA 1051 1128 ( 78 n); score: 0.899 Intron 5 74096 73732 ( 365 n); Pd: 0.000 (s: 0.92), Pa: 0.938 (s: 0) Exon 6 73731 73724 ( 8 n); cDNA 1129 1136 ( 8 n); score: 0.750 MATCH C08HBa0320P23.1- SGN-U325194+ 0.863 234 0.206 C PGS_C08HBa0320P23.1-_SGN-U325194+ (84316 84311,81889 81853,80644 80637,74319 74224,74175 74097,73731 73724) Alignment (genomic DNA sequence = upper lines): AAAGTGGTAA CCTTTTTTGG TGTTCACCCG CGAGAATCAC GCCTTGTATT ATGCGGTTCT 84257 || ||| AATGTG.... .......... .......... .......... .......... .......... 911 TGTAAGAGGT GCTTTTCACT TAGGTCCCTG AAGTTTGGGG AAGTGACACT TTGATACACA 84197 .......... .......... .......... .......... .......... .......... 911 CTTTTGGTTA AAGTCAAGAA ACACCATCTT TTCATTATTA TTTTCTTTGT TTAAGGTATT 84137 .......... .......... .......... .......... .......... .......... 911 TAAGTTGAAT ACAATGAAAC AATAGATATG ATTACATGTT TTATTGGGTC GAAAGCACGG 84077 .......... .......... .......... .......... .......... .......... 911 CATCAAAAAT GATTATTAAG GATAATTAAT TTCCATTTAT TGTTAAATAT ATATTTTTAG 84017 .......... .......... .......... .......... .......... .......... 911 CAGCAATTAA TACTTTTTAT ATATATGTCC CTTAGTGATA TTGATTCTAA TGACACTTAA 83957 .......... .......... .......... .......... .......... .......... 911 CTAATGTCGG TAACACTTTA GCACTATTTA TTAATATCTA TATTTATTGC TGCTAAATTG 83897 .......... .......... .......... .......... .......... .......... 911 TTTTTTTTAC GGTGAGTGAG GAGTACAAAA CCTCTATTTG ACTACTTTGC ACTTGAAATG 83837 .......... .......... .......... .......... .......... .......... 911 AGGGAAAAAA GAGAAAGGGG AAATCACTCT TACCCTCTAT TTTCCTTCCT ACATAAATTT 83777 .......... .......... .......... .......... .......... .......... 911 TTCTGTACAA ATGGAGAAGG CTAGATTAAC ATTTTAAAAT GGAACATCGA ATTTTTAATA 83717 .......... .......... .......... .......... .......... .......... 911 ATAAAACAAA AATTTAAATA GTCAATTAAC TGAACTATCA TATTCTTTCA TTTTTCTTCC 83657 .......... .......... .......... .......... .......... .......... 911 ACCACTTAAT TAGTGGATGA GATGAGAGTC ATGGACTCAT GATGATAACA ATTATTGATA 83597 .......... .......... .......... .......... .......... .......... 911 AAAGGTTAAA GCCTTCCACT TTTAGTATAT ACCAAAGAAC AAGATATACA TTAAGTTTAA 83537 .......... .......... .......... .......... .......... .......... 911 AAGTCCTTTT GGTGCTTCAC TTAATTAGTT TTAATTTGCT CTAAAATGTG CCACATACAC 83477 .......... .......... .......... .......... .......... .......... 911 CCACCTTTAG AAGGCTATGC CATTGTCTAT ATATGATATG AATGGAATTG CAACTTTAAT 83417 .......... .......... .......... .......... .......... .......... 911 AATATAGCAA CTCATCATCC TAATTTTCTT ATATATTCAA CAATCATAGT CCATTATATT 83357 .......... .......... .......... .......... .......... .......... 911 ACCATGTGAC TATTGGAATA TTATATTGTT TGGGTACATG AGAATTTAGA CTTAAAAGTA 83297 .......... .......... .......... .......... .......... .......... 911 GATACGTCTA TAAAAAAAAA TATCTTTCTA AATTTAATAG CAATTCAATC GTAAACATTT 83237 .......... .......... .......... .......... .......... .......... 911 TATTTTATAA TTAATGAGAT CATTCACATA TAAATATTTA TAAACTTTTC ATATCATAAT 83177 .......... .......... .......... .......... .......... .......... 911 TTTTTTTTAA AAAAATAATC TCAAATAACG TATTTAATCA AATAATATCA TATACATTGC 83117 .......... .......... .......... .......... .......... .......... 911 AATAGTGAGA GTTCTTTATT ATAAAGGGAC CTATAGGTGG GAGCTTTGTT CTCTTGAGGT 83057 .......... .......... .......... .......... .......... .......... 911 TTTAGCTTAA TTTTGTTGAA ACATTATCAT GTGATCTTTC CTTAATGCTA CTACTAAGTA 82997 .......... .......... .......... .......... .......... .......... 911 CTCTTTTTTA ACTTTTAATT AAGAAGAGAA AGTGGAAGTT CCTTTGTCTC CACTATTTTA 82937 .......... .......... .......... .......... .......... .......... 911 TTGATATATG TATATATTAT TGAATTTTAC TTTAATACAT TATTATGAAG AAAAATTAAA 82877 .......... .......... .......... .......... .......... .......... 911 TACTAAAATA TATAACTTAA TAAGAGAAAT TTGATAAACA CAACAAAAAT AGTTTCTAAT 82817 .......... .......... .......... .......... .......... .......... 911 TTTTTAGACT TTATACCCTA TTAAACGATC TCATATAAAT TGAAACAATG AAAATTAACC 82757 .......... .......... .......... .......... .......... .......... 911 GAACGCTTAC AAGAATTTCG AATGTATAAA CTGGGGTCCT ATTATACCTT CATTTTTCTT 82697 .......... .......... .......... .......... .......... .......... 911 CCTTTCAATA TACAATTTCC AAGGAAAAGA TATCAGTTTA TTATACAGTA GATACTCCTA 82637 .......... .......... .......... .......... .......... .......... 911 GTACTAGTCA AAAAGATAAG AAAAGTAGTA CACAAAATCA ATTAGATTTC ATTGTTTCCT 82577 .......... .......... .......... .......... .......... .......... 911 TTACAAGAAT AATATAATAT TACTCCTGTA TATACTCTTA AGAAATAAAG ATTTCATTTT 82517 .......... .......... .......... .......... .......... .......... 911 ACTAGTCTAA TTTAATAAAT TAAGATTTTT TTTATAAAAA AATAACCATC ATTGTTAAGA 82457 .......... .......... .......... .......... .......... .......... 911 TTAGTTTTAA AAAAAACATA ATTTTTAATT TTAATTTTTT TAAAATATAT GTCAAATCAA 82397 .......... .......... .......... .......... .......... .......... 911 TAGAGTAATA TATGAAATGG AAAAAGTATC ACTAGTAACT CCAAATTAGG CATCTTTGTG 82337 .......... .......... .......... .......... .......... .......... 911 TTTTGTCTCT GTTATACTTG ATGACTTCAC TTCTGCTGCT GTTTGTTTTT TTTTTATTTT 82277 .......... .......... .......... .......... .......... .......... 911 TTATTTTTTG GAATAAAACA TAATAAATGT GAGCCATGAA AGGAATAATC AGAAAAAATA 82217 .......... .......... .......... .......... .......... .......... 911 AACTCAATAA AATATATAAT AATCACATAA GGGAATATTT TTATCAAGCA CTTTCATGTA 82157 .......... .......... .......... .......... .......... .......... 911 GTACATTATA AAGTAGCCTG CGTTTACACT TTATCTTTAT GTTTTATGCA TTAACGACTT 82097 .......... .......... .......... .......... .......... .......... 911 AAATTAGTAT TTATTTAAGC AATTAATCAA AGTAAGTTTC TATTTACTTG TTCACTTTTA 82037 .......... .......... .......... .......... .......... .......... 911 AATTAATATT ACTATTAAGA AAATATTTTC TTCGTCCGGT ATTATTTGTC TTAGTTTTTA 81977 .......... .......... .......... .......... .......... .......... 911 TTTTTAGAGT CAAATTATAA AAAATTTGAC TAACATTTTA AGATGCATTT TTTCATCATA 81917 .......... .......... .......... .......... .......... .......... 911 TTAATATGAA AAAATTGTAA TTGATAGTAC TTTTCATATA GTTTTGGAAT CTCTAATTTT 81857 | | |||||| || | | | | ||| | || | .......... .......... .......TCC ATTTCATTTA AATCT-AACT CTC-ATTTAT 942 TTTTGTTTGA AATATCGAAT TAATGTATCT AATTTACCTT TGAAAATTAG TCAAATTAAC 81797 |||| TTTT...... .......... .......... .......... .......... .......... 946 TTTCGATAAG CGTAACATGA CAAACATTTC TCGACGGAGG GAGTAATTAT TGACATATAA 81737 .......... .......... .......... .......... .......... .......... 946 AATTTACCAT TTTACCCCTA TAAATTATGA ACTGAATGAA CTAAAAATTT AAAATTTTTA 81677 .......... .......... .......... .......... .......... .......... 946 AAAAATTCTA CTTTTTCAAT GTAATTAGCT GAGGGTACAA TGGGTAAAAG ATATTTGTCT 81617 .......... .......... .......... .......... .......... .......... 946 CGTCTAAATT TATCAAAATG AACAAGTAAT TAGGAATAAC TAAAAAGAAA AAAATGGATA 81557 .......... .......... .......... .......... .......... .......... 946 AATAATTAGA GGACAGAGAG AGTATAAAGT TAATGATGCA CATATTTGTT GATTAAGCAA 81497 .......... .......... .......... .......... .......... .......... 946 TGATAACATG AACTACTTTT ATCTTTTACA AAAGCTGAGA TTCCTCTCAA TAAAAAAATT 81437 .......... .......... .......... .......... .......... .......... 946 TAATTAAAAA TTTGAAATTT ATGAATTTTT ATGACGATTT TAAATTAATT TTATAATAGT 81377 .......... .......... .......... .......... .......... .......... 946 AATTTAACTT GCAATCAAAT ATTTATAGAT ATTCAGTTAA TTTGTTAATG TATATCAATA 81317 .......... .......... .......... .......... .......... .......... 946 AAGGTCATTG CCATTGAAGA GAATAACTTT TTTCTATCAT GCATGCATGC ACACAAGATG 81257 .......... .......... .......... .......... .......... .......... 946 AAAAGAAAAG TAAATTTTGA GAAAAAGATG ACATATCTTT TTTATTTACT TTTAGTTAAT 81197 .......... .......... .......... .......... .......... .......... 946 TTTAAACCTT TCTTTTCCCA ACTTTTTCTT ACTTTGCTCT CATTTCACTA ATCATATTCT 81137 .......... .......... .......... .......... .......... .......... 946 TTTTGGGTTG ATAGAAATAA AAGTTGCACC CAACCTATAT GAAGAAGCCA CATCAACTAC 81077 .......... .......... .......... .......... .......... .......... 946 TAAAACAACA TTGGAAAAAA AAATCAAAAT AATTCATTTT ACATGTTGTA TAATATTTTA 81017 .......... .......... .......... .......... .......... .......... 946 CACTATCAAG TTAACTGTAA TAATAAATCA AAATTATTTA TGACAATTCT GATACGATAA 80957 .......... .......... .......... .......... .......... .......... 946 TTTTAAATAA CATTTCAATC ACAATATTAT AAAAATTCTT TACACTGTCG AACAACTAGT 80897 .......... .......... .......... .......... .......... .......... 946 GCCCTCTTTG CTTTTGGCAC AAAAACTAAT TTCCACAAAT ATAGGTCCAT CATTATTTAC 80837 .......... .......... .......... .......... .......... .......... 946 TAGGGTTTAG CATTCACCCT AAGACCCTTT TGGCTATAAA AGAAATACAA ATTCATTTTT 80777 .......... .......... .......... .......... .......... .......... 946 TTGGGAATAA TTTTTTATAA TAGCATATGA AATTTCACCA TGAAGATTTA TAATAGCATA 80717 .......... .......... .......... .......... .......... .......... 946 TAAAAGTTCA CCATGAATAT TCCTTTCATC TTGTTGAACA AACTTTCTTG AACATTCTTC 80657 .......... .......... .......... .......... .......... .......... 946 ATTTTCGATC AGAGGCAGAT GCAGGATTTA GAGTCTCTGA GTGTCAACTA AATTCATCTA 80597 |||| | .......... ..GGGCAACT .......... .......... .......... .......... 954 TTATATCAAT TTAGACTTTG GATCAAAATA TTCATCAACC ATCAATTCCT CTGATGTATC 80537 .......... .......... .......... .......... .......... .......... 954 TCCAGATGAC AAATTGTCGA ATACTTCAGA TTGGCCTAAA ATATATTCAA TGAAAAAAAT 80477 .......... .......... .......... .......... .......... .......... 954 TAAAATTAAA ATTTGGTTCT TGACATAACA AAAAGTTAAT AAGGACTCAA TTTTTTTTTA 80417 .......... .......... .......... .......... .......... .......... 954 GAGAATTAAA TAGCTACAAT AATAATTTAA TCATATGCTA AGAGGTGAAT AATTAACCTG 80357 .......... .......... .......... .......... .......... .......... 954 AAGAAGCTGA TCTATCAGTT GTCTTTACAG TCCGATACAT CTGCAAGATA TATGAGAAAA 80297 .......... .......... .......... .......... .......... .......... 954 TTTCGTTAAT AGCATTATTT GTGACAATAA TTTATTTGTT TTTTTTATGT GGTACGTATA 80237 .......... .......... .......... .......... .......... .......... 954 TAGTTTAAAA AGATAAAAAA GACGTTTGAA TTATATGATT TTAAATTAAA GATATGTCAA 80177 .......... .......... .......... .......... .......... .......... 954 ATATATTAAA ATATCTATTA ATTTTACAAT TTTAAACATG TCACACATGA ATATAAAAAT 80117 .......... .......... .......... .......... .......... .......... 954 TGTAAAAAAA ATAAGATATT CTTTTTTTGG GAGTGTGCAT AAATAACATG TACTAGTACT 80057 .......... .......... .......... .......... .......... .......... 954 TAATACTATT ACAAATGACC AATTACATGA AGTTCTTGAA AGTTGAAACT GTTTTCTGTG 79997 .......... .......... .......... .......... .......... .......... 954 TTGCTAACAA TTTTTTATAA AGATATGGAG ATATCATTGA GATATGATCA CTGTGTCATG 79937 .......... .......... .......... .......... .......... .......... 954 TACTAGTACA GCAGTACTTC CTTTCTCCAA AAATATAAAA AACTAAAAAA ATATAGTAAC 79877 .......... .......... .......... .......... .......... .......... 954 TTACTAGTAG ATTCAATTAC AAATTCGATT TTGCAATATG AGTGAAATCT ATCCGTATAT 79817 .......... .......... .......... .......... .......... .......... 954 TCTAGCAAAA TTTAGAGGTA TTTTAAACCA TTTTTTCGGT TTTTAATAAT AGAATCTCAT 79757 .......... .......... .......... .......... .......... .......... 954 GCTTATATAA GAGTTTGAAA TTACTTTGTT ATGTCCAGAT GTGAAAACAT GATTTGACGA 79697 .......... .......... .......... .......... .......... .......... 954 TTTTGGATGC ACAAATGTTA CCTTAGCTCA AATATGAGCT CTTAGATAAA CTTTAAATAA 79637 .......... .......... .......... .......... .......... .......... 954 AAACAGTGAA ATAAACACTC TAGCTGGATT AAACTCAAGG GCCAGGTCTC TTAGGTAGAT 79577 .......... .......... .......... .......... .......... .......... 954 CCTCTAGCTT GTACTAGCAA CACAATGACA CTCCTATATT TTTCATGGGT GCATTGGTAA 79517 .......... .......... .......... .......... .......... .......... 954 TTAAATCTTA ATTTCTGTCA GTTTTTCAAG ATATATATAA ATATATATGC ATAATTTTTC 79457 .......... .......... .......... .......... .......... .......... 954 TAAAGTTAAC GGATGAACGT ACACCCCTCC TAGAGGGATG GTCCACTTCC GACTATGTCA 79397 .......... .......... .......... .......... .......... .......... 954 TCAAGATATA TATATATATA TATATAAAAA TTTTTCTGAA AGTTAATAAA TACACATACA 79337 .......... .......... .......... .......... .......... .......... 954 CTTCACCTTG AGAATTAATC TGCTTCTGGC TATATCATGT TGTAAATTGA GGTTTTCGAA 79277 .......... .......... .......... .......... .......... .......... 954 TGGATTTATA AGAAAATAGT GTTAACTTAT TTTCCTTGTC CACCTGATGT AATTATTGAT 79217 .......... .......... .......... .......... .......... .......... 954 GAATCATTAT ATGAAGGAGA CTTTTTCTCC TCTCTCCTCT AATTGAACTC ACCCTTTTTA 79157 .......... .......... .......... .......... .......... .......... 954 ACTTTTACAA GTACTATTCC TTTCACACTA CACATGAATG GATGTTTGGT TCTCCCAAAG 79097 .......... .......... .......... .......... .......... .......... 954 TATATAAAAA GAAAAAAAAA AGCTGCATAA AGAAAGCCTG GCATTGCAAA GGAAAAAGAT 79037 .......... .......... .......... .......... .......... .......... 954 AGCATTGGAA TTTGAAATGT AGAATCAAAA CCTTTTTTTT TCTTCAAAAA TCACTTAATT 78977 .......... .......... .......... .......... .......... .......... 954 AAACACATTA AAACAACTTC ATATAAAAGA AAATTAATAT GGCGAAAACA ATTTTTAGCA 78917 .......... .......... .......... .......... .......... .......... 954 GCATAAATAT GCATATTGTC AATAAGTATA AAAAAATTTA TCAGTAATAG TCAATTTTGT 78857 .......... .......... .......... .......... .......... .......... 954 CATTAGATTT AATATTATTA TAAATTTTAG AGACATTTAC AAAAAAATGT CAAATGCCTC 78797 .......... .......... .......... .......... .......... .......... 954 TAAAAATATA CTTGACTACA ATTAAACTAT TACTGTTGAC TAGTTACCGC TAAAAAATCA 78737 .......... .......... .......... .......... .......... .......... 954 TTTTAATTTG ATGTAGTGGC ATACTAAGGA AAAATAATTA GTAAGATGTT TAGAAAAATT 78677 .......... .......... .......... .......... .......... .......... 954 ACCTGTAAAT GGGATTTAAC ATGTGCTAAG GTGAGATCTT TGACATCCAT AAGCTCAAGA 78617 .......... .......... .......... .......... .......... .......... 954 ACTGATTTTG GTGTTGCTCC TAAAGACCCC CCAAAAAAAC AAAAAACATC ATATATTCAC 78557 .......... .......... .......... .......... .......... .......... 954 CATTATTTTA CTTGGTTAAC AATGAGTTTA AATTAAGTAA AAAGAAAATA TAGCTTTCCT 78497 .......... .......... .......... .......... .......... .......... 954 TTTCCTATCA TAGTCTATTC GATAGAAAAT CGAGTACTTC TTGATCGTGA ATATCTAAAC 78437 .......... .......... .......... .......... .......... .......... 954 TAGTCTTAAA TCATAACCAT AGAGTATGAC ATATATAAGA ACTACTCAAG GTACTTTGAA 78377 .......... .......... .......... .......... .......... .......... 954 ACAGAAACAA CAATTATTGG AACACCAACA ACTAGTCAGC TACTAAAAAA TGAGCTCTCA 78317 .......... .......... .......... .......... .......... .......... 954 TCATGTGAAC TTTATGTCAG TTCTTTGTCG CTCTGATTCG TTAAATTGAA GAAAAGGAGA 78257 .......... .......... .......... .......... .......... .......... 954 TCGAACACTA CAAGAAAACT GCGAATTATA TGGCTATTTT CCTGGAAATT AATATGAAAA 78197 .......... .......... .......... .......... .......... .......... 954 TTTTCAGGAA AATAAGTTTC ATGCGAATTT TCATACTAAT CCCCGTTGTA ATTTACAGTT 78137 .......... .......... .......... .......... .......... .......... 954 TTCTTGTAGT GAAACCATCA TGAAATTCAA AGTGCACAAG GGATATGAAG AAGCTTACTT 78077 .......... .......... .......... .......... .......... .......... 954 TCATGGCCAC CCAAGAGTTC AACAGCATGA ACAAAATGAG CATGGAGAGT ACTTGTCCAA 78017 .......... .......... .......... .......... .......... .......... 954 CGCATCCTTG GAGCCCTAGT GCTCCGTTTA GTCGAATATC TTGATAAAAA TCTTGATCTA 77957 .......... .......... .......... .......... .......... .......... 954 AAAAACCCTC CTTGTTGAAA ATTAGGTCTA GTAGAGGCAC AAGAACTAAT TGTGTTCTTA 77897 .......... .......... .......... .......... .......... .......... 954 ATATTATTAT TGTTGATAAT AGAACAAGGT GAACAAGTTA TAGGAAATGT AGTAGTAGTA 77837 .......... .......... .......... .......... .......... .......... 954 GTAGTATTAA AGGGCTTTTG ATGATACACC GGAATGCCTC TTATTATAGT TTGATTTTGT 77777 .......... .......... .......... .......... .......... .......... 954 TGTGAGATGT TGTAATTTTG GAGATTATGT AAATGATGGG AAGAATTAGG GTTAGGTTTA 77717 .......... .......... .......... .......... .......... .......... 954 GTTGGATTAT TGGATAAAGA AAGGTCAAAA CAAGAAGAAG AAGAAGTGTT AATAGGATTT 77657 .......... .......... .......... .......... .......... .......... 954 GTTGATTCCA CCACATGAGC TCTTTTACAA AACCCTAAAT CCATATGAAT ATCATCTTCA 77597 .......... .......... .......... .......... .......... .......... 954 CTTGTAATTT TCCTCTTCCA TGTTGATGAT GAAGGTTTGA TGTTTGGTGG GCTAATTTTT 77537 .......... .......... .......... .......... .......... .......... 954 AGGGATAAGT CTGGTTGTGC TGGGAATAGT TCCATATATC CTTGTTACTT CTTTCTACGT 77477 .......... .......... .......... .......... .......... .......... 954 GGCACTGTTC AAATTTCGAG AGTCTGAAAA AAAAAAATTT TAGTACATAC CTAGATTCAA 77417 .......... .......... .......... .......... .......... .......... 954 TTTTTTTTTT CTCTCCACCC CTTTTTCTTC TTCTCCTCTT TGTTGCTCTC TAGGTTTTCT 77357 .......... .......... .......... .......... .......... .......... 954 TTATTTTGGC TAGTTGTTTT TTTTTTTTTA GCTATATGAT ATGTATATAC ACTAGAAGAT 77297 .......... .......... .......... .......... .......... .......... 954 GGATTATTTT TGAGAAAATT AAAGATATAG GAGGAGGGAG AGAAAATTGT GGATTTTTCC 77237 .......... .......... .......... .......... .......... .......... 954 TTTGGGATTT GAGGTCATTT GTAGGGATTT GAGATTGAGA AATAAGAGAA AGGAGGTAGA 77177 .......... .......... .......... .......... .......... .......... 954 AGAAAGGACA AAGTATAAAT GAAGTGAGTG GTTGTTTTTT TTGTTTTTTT TGTTGAGTGG 77117 .......... .......... .......... .......... .......... .......... 954 TTGATTTTTT TTGGTGTGTG AGAGGTTGTA TATCTTAGAA AATGACACTT GAGGGGGCTA 77057 .......... .......... .......... .......... .......... .......... 954 GTGTGGGGGA GAGGTTGGTA GAGTGGGGTT ATTTCATTTC ACCGGGTGAA TAAAATTCAA 76997 .......... .......... .......... .......... .......... .......... 954 AATTTATATT TTATGAGTTT TGAATTTTAA GAAAAGATAA ATTTATTTCA TATATACTTC 76937 .......... .......... .......... .......... .......... .......... 954 TTAAAATTAA TTATTTATTT TTTAAAATTT AATACTAAAC ATCAATTTAT ATGAATAATA 76877 .......... .......... .......... .......... .......... .......... 954 TAGCAAAATA ATCATGTTAT CATATTTTTT TCAAAAGATA TGTAAAATTA AAGTGGACTT 76817 .......... .......... .......... .......... .......... .......... 954 AAAAATGAAC AAATCAACTA CTAATATAAT AAGAAAAAAA ATAATGCGGA CTTATAATTT 76757 .......... .......... .......... .......... .......... .......... 954 TTATGAGACG TGAAAATGTG ATGGAGTAAT AGTCTATTCA TTTACTTGTC ATAATTTGAC 76697 .......... .......... .......... .......... .......... .......... 954 TTGACACATT TATTAAGAAA ATAACGATTG ATATAATGAA TTTATTATTT TATTTTTATT 76637 .......... .......... .......... .......... .......... .......... 954 AATTAATAGA ATCTCAAATA TATTTACTCA TTATATTTTT TAAAGGCATC AACTCAATGT 76577 .......... .......... .......... .......... .......... .......... 954 TAATAAATTA AAAGTATAAT TAAAAAACCA TTATTCCACA ATTTGTTAAA TGTGACAAGA 76517 .......... .......... .......... .......... .......... .......... 954 AAAAGTAGAA ATTAAAAAAA AGTATTTGAT AAGTAAATCA TGATGGAGAA AGTATGTAAA 76457 .......... .......... .......... .......... .......... .......... 954 GGGGGCGCAT ATTTTACTAT TCTTTTTTGG ATTCTTATTC ATCATTTGGA ATTCACGTTG 76397 .......... .......... .......... .......... .......... .......... 954 AAACTTCGAT TTAGTAAAAT ATATTTAGAT ACAATATTTA ATAAGAATTT TTATATATTT 76337 .......... .......... .......... .......... .......... .......... 954 AAAATTTAAA TTTAAAATTT TTAATTAAAA ATAATATAAA TATTCTAATA AAAAAATTTT 76277 .......... .......... .......... .......... .......... .......... 954 CATACTTAAA TTTTAAATTC AAAATTTTTA ATTAAAAATA AAGCAATCAC AACGCCATAA 76217 .......... .......... .......... .......... .......... .......... 954 TCAATGTTGA CGGTATTTTT CATTTTATAA GGGTTGGTGG CCGGACAACC ACAGAATTTC 76157 .......... .......... .......... .......... .......... .......... 954 TAGACCTATA TACACACATG AAATGATTTT GCATAAATTC CCATATTGTA CCAATAATGA 76097 .......... .......... .......... .......... .......... .......... 954 AACTTACTAA TCACCAATTT ATGATGAATT ATTTCGAGTC CATATTCAAA AAGGGTGAAC 76037 .......... .......... .......... .......... .......... .......... 954 TATTTTGAGA AGTTTGTATA CAAAATTTTC GAAGTTTAAA TTTTTGAATT TAATTTTACT 75977 .......... .......... .......... .......... .......... .......... 954 AATTAATGAA TCACGATGAA CTATTTTGAG TTCAAATTTA AAAACGGTGA ACTATTTTGA 75917 .......... .......... .......... .......... .......... .......... 954 GAAGTTTGTA TGCAAAGTTT TTGAAGTTTG ATATTTTGAA TTTAATTTTG AGGTATTTTT 75857 .......... .......... .......... .......... .......... .......... 954 GAGACACGTG GTGTCTAAGG AGAATATCAA AGTGAATTCG TCTGAATAGA GGCAGTTAGA 75797 .......... .......... .......... .......... .......... .......... 954 GGTTGGACTA GGCCTACTTT AGTTACTGAA ATACGAAATT TCATATAATT TAAAGTTCAA 75737 .......... .......... .......... .......... .......... .......... 954 ATTTAAAAAT AATGAACTAT ATTAAGTTTT TGTAAAAATA AATTAAAACT TACTCATTAT 75677 .......... .......... .......... .......... .......... .......... 954 CTCAGAATAT CAATTTTCAC AATTAAGTAT AAATTTATAA CAATAAACAA TAATGATTTA 75617 .......... .......... .......... .......... .......... .......... 954 CTTTCAATTA TATGGCTAAA ATATAGATAT TTATAAATCT TCCTGAGATA TCTACTTTCA 75557 .......... .......... .......... .......... .......... .......... 954 CTCGATACAC AAGTTTTAAG AAGCAAATGA TATATCCAAA TTATGTAAAT TATCTGATTT 75497 .......... .......... .......... .......... .......... .......... 954 TCTATATTTA GTTACAAAAT TTCACGGTAC ACACATGCCT CATAATAGGA AGATTTGTTT 75437 .......... .......... .......... .......... .......... .......... 954 CGACTACAAA GGAAAATTCT CCAAACAAAT AATAATATAA AAATAGACCC TACAAAAATA 75377 .......... .......... .......... .......... .......... .......... 954 AAAAGACATA CTCTTGTCTT TATGGATTTC ATTTATTATG ATTCAATTAC TTAAACTCAA 75317 .......... .......... .......... .......... .......... .......... 954 TCCTATTGTG TGTGGTTTGA TTCAATTATG TATTTTCAAT TGATTTCATA ACTTGAGAAT 75257 .......... .......... .......... .......... .......... .......... 954 TGTGCTTTTG AGGTTGAGGA AAGAAAAGTT GTAAGCGGAA TTCTCCAAGT GTGAATATGT 75197 .......... .......... .......... .......... .......... .......... 954 GCTTGATTTT GAGGCATTTT TGGAATACGT GGTTTCCAAA GTGGATATTG GGTGAATTCA 75137 .......... .......... .......... .......... .......... .......... 954 TCCAAGGTTG AGGCAGTTAG GGGTTGGACG AGGCTTACTA TAATTATTGA GGTTCAAAAT 75077 .......... .......... .......... .......... .......... .......... 954 TTCATGCAAT TGATAACCTA TGACAAACAT CACTCCACCA TAACTTTGAT CACCAAATAT 75017 .......... .......... .......... .......... .......... .......... 954 GATTAATGAA ATAGTAACTG TCACACTCTT ATTATCCAAA CAATATATAA CTGTCACTCT 74957 .......... .......... .......... .......... .......... .......... 954 ACCACAATCC TGATCACAAA ACATGACTAA TGAAGTAATA ATGGTCACAC TCTCATTATC 74897 .......... .......... .......... .......... .......... .......... 954 CAAACAATGT ATATTTGACA TAGGTGTAGG ATCCTCCTAT TATAAGACTG ACCAAATTAG 74837 .......... .......... .......... .......... .......... .......... 954 CCAAAAAGTT GGAAACATAT TGAATTTTTC TTGAGACTTT TATCAAGTGA ACCTTATAGA 74777 .......... .......... .......... .......... .......... .......... 954 AAATCCTCAA TATATCTTAT GATAAAAACT CATTGGATTA TCCTCCTTTT TATTTTGATA 74717 .......... .......... .......... .......... .......... .......... 954 AGACCCCATT AATTAATTAA CTTTTAGTTA TGAGCAACTC AATACAATTA ACAGTTCAAT 74657 .......... .......... .......... .......... .......... .......... 954 TTTGTAAAGG GTAAAATCAA AATCTTCTAC TATGTGGTAT CTATAGCTCA TTGGTCATAG 74597 .......... .......... .......... .......... .......... .......... 954 TTTGTCTTTA TTTACCTCTA AAAATATTCT GTTTCTTTTC TCGCCCATAG TTTTCTCTTA 74537 .......... .......... .......... .......... .......... .......... 954 TTTTTCTCAA AATTCCATGC TCATGGCAAA AAAAAAAACA AGAAATGACA CTACTAGGAT 74477 .......... .......... .......... .......... .......... .......... 954 ATTTGGGCCT ACAATACACA GTAGTACAAT CAAATATTTT GTTTTCCGTT CATTTTAATT 74417 .......... .......... .......... .......... .......... .......... 954 TATATGACGT AATATACTTT AAGATAAACT TTTAAAAAAT TATTAATACT GTTTACATAA 74357 .......... .......... .......... .......... .......... .......... 954 TTACTTCATT TTATCGCTGC ACATAAAATG AAGGGCAATT TTCACATATA ACAAACAAAA 74297 || |||||||| | ||||||||| .......... .......... .......... .......TTT TTCACATACA GCAAACAAAA 977 ATATTATATT TATATGTTAT AACAAAGTTT GCATAATTGC ACTCTATAGC AAACATATAA 74237 | | ||||| | |||| ||| | |||| || |||||||||| || ||||| ||||||| || AATTCATATT TGTATGCTAT AGCAAACTTC GCATAATTGC GTTCCATAGC AAACATAAAA 1037 ATGTATAATT CGCACAATTG TATAATTCGC TGGCCCAAAT TATATAATTC GCTGGTCTCA 74177 ||||||||| ||| TTGTATAATT CGC....... .......... .......... .......... .......... 1050 CTATACATAT ACAATTGTAT GATTTGCTGG CTTATTTCAC TGCAATTGTA TAATGCACAA 74117 ||||||||| |||||||||| ||| ||| | |||||||| |||||||||| |||||||||| .TATACATAT ACAATTGTAT AATTCGCTAT CCTATTTCAC TGCAATTGTA TAATGCACAA 1109 TTGTATAATT TACTGACCTA TTTCGCTGCA GTATTTATAT AAAATTTGTT TCGCATACAA 74057 |||||||||| ||| |||| TTGTATAATT CGCTG-CCTA .......... .......... .......... .......... 1128 TTGAATCGAA GTAAAATGTT TGTATATTGT ATAATTATAA GTGTATAGGA AGAAGATATA 73997 .......... .......... .......... .......... .......... .......... 1128 TGTTTTTCTC TCGCTTTATA CAAAAACAGA AACACAATTT ATACACTTTT GTTATATAAA 73937 .......... .......... .......... .......... .......... .......... 1128 GCAAGAGAAA ATTGTATTTC ACTGCAATTG TATAATTCAC AATTGTATTC GCTGGCCTTT 73877 .......... .......... .......... .......... .......... .......... 1128 TCGCTGCAGT ATTTGTATAA AATTTACATT TGTATACAAT TGAATCGAAG TAAAATATTT 73817 .......... .......... .......... .......... .......... .......... 1128 GTAAATTGTA TAATTAAGTG CATTGCACAA AAATATATGT TTTTGCATGT GTATATACAA 73757 .......... .......... .......... .......... .......... .......... 1128 TTTTTTCTCG CTTTATACAA AACAGAAACA CAA 73724 ||| | || .......... .......... .....AAAAA AAA 1136 hqPGS_C08HBa0320P23.1-_SGN-U325194+ (74319 74224,74175 74097) ******************************************************************************** EST sequence 30 -strand 481 n (File: SGN-U332019-) 1 GCACGAGCTC GTGCCGAATT CGGCACGAGA ATTTTCTCAA AAATAATCCA TCTTCTAGTG 61 TATATACATA TCATATAGCT AAAAAAAAAA AAACAACTAG CCAAAATAAA GAAAACCTAG 121 AGAGCAACAA AGAGGAGAAG AAGAAAAAGG GGTGGAGAGA AAAAAAAAAT TGAATCTAGG 181 TATGTACTAA AATTTTTTTT TTTCAGACTC TCGAAATTTG AACAGTGCCA CGTAGAAAGA 241 AGTAACAAGG ATATATGGAA CTATTCCCAG CACAACCAGA CTTATCCCTA AAAATTAGCC 301 CACCAAACAT CAAACCTTCA TCATCAACAT GGAAGAGGAA AATTACAAGT GAAGATGATA 361 TTCATATGGA TTTAGGGTTT TGTAAAAGAG CTCATGTGGT GGAATCAACA AATCCTATTA 421 ACACTTCTTC TTCTTCTTGT TTTGACCTTT CTTTATCCAA TAATCCAACT AAACCTAACC 481 C Predicted gene structure (within gDNA segment 76377 to 78328): Exon 1 77277 77728 ( 452 n); cDNA 30 481 ( 452 n); score: 1.000 MATCH C08HBa0320P23.1+ SGN-U332019- 1.000 452 0.940 C PGS_C08HBa0320P23.1+_SGN-U332019- (77277 77728) Alignment (genomic DNA sequence = upper lines): AATTTTCTCA AAAATAATCC ATCTTCTAGT GTATATACAT ATCATATAGC TAAAAAAAAA 77336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTCTCA AAAATAATCC ATCTTCTAGT GTATATACAT ATCATATAGC TAAAAAAAAA 89 AAAACAACTA GCCAAAATAA AGAAAACCTA GAGAGCAACA AAGAGGAGAA GAAGAAAAAG 77396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAACTA GCCAAAATAA AGAAAACCTA GAGAGCAACA AAGAGGAGAA GAAGAAAAAG 149 GGGTGGAGAG AAAAAAAAAA TTGAATCTAG GTATGTACTA AAATTTTTTT TTTTCAGACT 77456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGAGAG AAAAAAAAAA TTGAATCTAG GTATGTACTA AAATTTTTTT TTTTCAGACT 209 CTCGAAATTT GAACAGTGCC ACGTAGAAAG AAGTAACAAG GATATATGGA ACTATTCCCA 77516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAAATTT GAACAGTGCC ACGTAGAAAG AAGTAACAAG GATATATGGA ACTATTCCCA 269 GCACAACCAG ACTTATCCCT AAAAATTAGC CCACCAAACA TCAAACCTTC ATCATCAACA 77576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAACCAG ACTTATCCCT AAAAATTAGC CCACCAAACA TCAAACCTTC ATCATCAACA 329 TGGAAGAGGA AAATTACAAG TGAAGATGAT ATTCATATGG ATTTAGGGTT TTGTAAAAGA 77636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGAGGA AAATTACAAG TGAAGATGAT ATTCATATGG ATTTAGGGTT TTGTAAAAGA 389 GCTCATGTGG TGGAATCAAC AAATCCTATT AACACTTCTT CTTCTTCTTG TTTTGACCTT 77696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCATGTGG TGGAATCAAC AAATCCTATT AACACTTCTT CTTCTTCTTG TTTTGACCTT 449 TCTTTATCCA ATAATCCAAC TAAACCTAAC CC 77728 |||||||||| |||||||||| |||||||||| || TCTTTATCCA ATAATCCAAC TAAACCTAAC CC 481 hqPGS_C08HBa0320P23.1+_SGN-U332019- (77277 77728) ******************************************************************************** EST sequence 2 +strand 1287 n (File: SGN-U344884+) 1 GGGCCCGCGG GGCGGCGCTC TGACTAGTGG ATCCCCCGGG CTGCAGGAAT TCGGCACGAG 61 GGATTAATTC TCAAGATGTA TCGGACTGTA AAGACAACTG ATAGATCAGC TTCTTCAGGC 121 CAATCTGAAG TATTCGACAA TTTGTCAACT GGAGATACAT CAGAGGAATT GATGGTTGAT 181 GAATATTTTG ATCCAAAGTC TAAATTGATA TAATAGATGA ATTTAGTTGA CACTCAGAGA 241 CTCTAAATCC TGCATCTGCC TCTGATCGAA AATGAAGAAT GTTCAAGAAA GTTTGTTCAA 301 CAAGATGAAA GGAATATTCA TGGTGAACTT TTATATGCTA TTATAAATCT TCATGGTGAA 361 ATTTCATATG CTATTATAAA AAATTATTCC CAAAAAAATG AATTTGTATT TCTTTTATAG 421 CCAAAAGGGT CTTAGGGTGA ATGCTAAACC CTAGTAAATA ATGATGGACC TATATTTGTG 481 GAAATTAGTT TTTGTGCCAA AAGCAAAGAG GGCACTAGTT GTTCGACAGT GTAAAGAATT 541 TTTATAATAT TGTGATTGAA ATGTTATTTA AAGGGGGGGC CCGGTACCCA ATTCGCCCTA 601 TAGTGAGTCG TATTACAATT CACTGGCCGT GNTTTTACAA ANNNNNNNNN NNNNNNNNNN 661 NNNNNNNNNN NNNNNNNNNN NNNNNANNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 721 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 781 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 841 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 901 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 961 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1021 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1081 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1141 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1201 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1261 NNNNNNNNNN NNNNNNNNNN NNNNNNN Predicted gene structure (within gDNA segment 78385 to 88562): Exon 1 79318 79330 ( 13 n); cDNA 63 75 ( 13 n); score: 1.000 Intron 1 79331 80316 ( 986 n); Pd: 0.958 (s: 0), Pa: 0.980 (s: 1.00) Exon 2 80317 80359 ( 43 n); cDNA 76 118 ( 43 n); score: 1.000 Intron 2 80360 80501 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.989 (s: 0.98) Exon 3 80502 80955 ( 454 n); cDNA 119 572 ( 454 n); score: 0.998 Intron 3 80956 81102 ( 147 n); Pd: 0.000 (s: 1.00), Pa: 0.837 (s: 0) Exon 4 81103 81111 ( 9 n); cDNA 573 580 ( 8 n); score: 0.667 Intron 4 81112 81613 ( 502 n); Pd: 0.000 (s: 0), Pa: 0.836 (s: 0) Exon 5 81614 81622 ( 9 n); cDNA 581 589 ( 9 n); score: 0.444 Intron 5 81623 82177 ( 555 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.53) Exon 6 82178 82223 ( 46 n); cDNA 590 636 ( 47 n); score: 0.533 MATCH C08HBa0320P23.1+ SGN-U344884+ 0.998 574 0.446 C PGS_C08HBa0320P23.1+_SGN-U344884+ (79318 79330,80317 80359,80502 80955,81103 81111,81614 81622,82178 82223) Alignment (genomic DNA sequence = upper lines): ATTAATTCTC AAGGTGAAGT GTATGTGTAT TTATTAACTT TCAGAAAAAT TTTTATATAT 79377 |||||||||| ||| ATTAATTCTC AAG....... .......... .......... .......... .......... 75 ATATATATAT ATATCTTGAT GACATAGTCG GAAGTGGACC ATCCCTCTAG GAGGGGTGTA 79437 .......... .......... .......... .......... .......... .......... 75 CGTTCATCCG TTAACTTTAG AAAAATTATG CATATATATT TATATATATC TTGAAAAACT 79497 .......... .......... .......... .......... .......... .......... 75 GACAGAAATT AAGATTTAAT TACCAATGCA CCCATGAAAA ATATAGGAGT GTCATTGTGT 79557 .......... .......... .......... .......... .......... .......... 75 TGCTAGTACA AGCTAGAGGA TCTACCTAAG AGACCTGGCC CTTGAGTTTA ATCCAGCTAG 79617 .......... .......... .......... .......... .......... .......... 75 AGTGTTTATT TCACTGTTTT TATTTAAAGT TTATCTAAGA GCTCATATTT GAGCTAAGGT 79677 .......... .......... .......... .......... .......... .......... 75 AACATTTGTG CATCCAAAAT CGTCAAATCA TGTTTTCACA TCTGGACATA ACAAAGTAAT 79737 .......... .......... .......... .......... .......... .......... 75 TTCAAACTCT TATATAAGCA TGAGATTCTA TTATTAAAAA CCGAAAAAAT GGTTTAAAAT 79797 .......... .......... .......... .......... .......... .......... 75 ACCTCTAAAT TTTGCTAGAA TATACGGATA GATTTCACTC ATATTGCAAA ATCGAATTTG 79857 .......... .......... .......... .......... .......... .......... 75 TAATTGAATC TACTAGTAAG TTACTATATT TTTTTAGTTT TTTATATTTT TGGAGAAAGG 79917 .......... .......... .......... .......... .......... .......... 75 AAGTACTGCT GTACTAGTAC ATGACACAGT GATCATATCT CAATGATATC TCCATATCTT 79977 .......... .......... .......... .......... .......... .......... 75 TATAAAAAAT TGTTAGCAAC ACAGAAAACA GTTTCAACTT TCAAGAACTT CATGTAATTG 80037 .......... .......... .......... .......... .......... .......... 75 GTCATTTGTA ATAGTATTAA GTACTAGTAC ATGTTATTTA TGCACACTCC CAAAAAAAGA 80097 .......... .......... .......... .......... .......... .......... 75 ATATCTTATT TTTTTTACAA TTTTTATATT CATGTGTGAC ATGTTTAAAA TTGTAAAATT 80157 .......... .......... .......... .......... .......... .......... 75 AATAGATATT TTAATATATT TGACATATCT TTAATTTAAA ATCATATAAT TCAAACGTCT 80217 .......... .......... .......... .......... .......... .......... 75 TTTTTATCTT TTTAAACTAT ATACGTACCA CATAAAAAAA ACAAATAAAT TATTGTCACA 80277 .......... .......... .......... .......... .......... .......... 75 AATAATGCTA TTAACGAAAT TTTCTCATAT ATCTTGCAGA TGTATCGGAC TGTAAAGACA 80337 | |||||||||| |||||||||| .......... .......... .......... .........A TGTATCGGAC TGTAAAGACA 96 ACTGATAGAT CAGCTTCTTC AGGTTAATTA TTCACCTCTT AGCATATGAT TAAATTATTA 80397 |||||||||| |||||||||| || ACTGATAGAT CAGCTTCTTC AG........ .......... .......... .......... 118 TTGTAGCTAT TTAATTCTCT AAAAAAAAAT TGAGTCCTTA TTAACTTTTT GTTATGTCAA 80457 .......... .......... .......... .......... .......... .......... 118 GAACCAAATT TTAATTTTAA TTTTTTTCAT TGAATATATT TTAGGCCAAT CTGAAGTATT 80517 |||||| |||||||||| .......... .......... .......... .......... ....GCCAAT CTGAAGTATT 134 CGACAATTTG TCATCTGGAG ATACATCAGA GGAATTGATG GTTGATGAAT ATTTTGATCC 80577 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACAATTTG TCAACTGGAG ATACATCAGA GGAATTGATG GTTGATGAAT ATTTTGATCC 194 AAAGTCTAAA TTGATATAAT AGATGAATTT AGTTGACACT CAGAGACTCT AAATCCTGCA 80637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTCTAAA TTGATATAAT AGATGAATTT AGTTGACACT CAGAGACTCT AAATCCTGCA 254 TCTGCCTCTG ATCGAAAATG AAGAATGTTC AAGAAAGTTT GTTCAACAAG ATGAAAGGAA 80697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCCTCTG ATCGAAAATG AAGAATGTTC AAGAAAGTTT GTTCAACAAG ATGAAAGGAA 314 TATTCATGGT GAACTTTTAT ATGCTATTAT AAATCTTCAT GGTGAAATTT CATATGCTAT 80757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCATGGT GAACTTTTAT ATGCTATTAT AAATCTTCAT GGTGAAATTT CATATGCTAT 374 TATAAAAAAT TATTCCCAAA AAAATGAATT TGTATTTCTT TTATAGCCAA AAGGGTCTTA 80817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAAAAAAT TATTCCCAAA AAAATGAATT TGTATTTCTT TTATAGCCAA AAGGGTCTTA 434 GGGTGAATGC TAAACCCTAG TAAATAATGA TGGACCTATA TTTGTGGAAA TTAGTTTTTG 80877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGAATGC TAAACCCTAG TAAATAATGA TGGACCTATA TTTGTGGAAA TTAGTTTTTG 494 TGCCAAAAGC AAAGAGGGCA CTAGTTGTTC GACAGTGTAA AGAATTTTTA TAATATTGTG 80937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAAAAGC AAAGAGGGCA CTAGTTGTTC GACAGTGTAA AGAATTTTTA TAATATTGTG 554 ATTGAAATGT TATTTAAAAT TATCGTATCA GAATTGTCAT AAATAATTTT GATTTATTAT 80997 |||||||||| |||||||| ATTGAAATGT TATTTAAA.. .......... .......... .......... .......... 572 TACAGTTAAC TTGATAGTGT AAAATATTAT ACAACATGTA AAATGAATTA TTTTGATTTT 81057 .......... .......... .......... .......... .......... .......... 572 TTTTTCCAAT GTTGTTTTAG TAGTTGATGT GGCTTCTTCA TATAGGTTGG GTGCAACTTT 81117 | || | || .......... .......... .......... .......... .....G-GGG GGGC...... 580 TATTTCTATC AACCCAAAAA GAATATGATT AGTGAAATGA GAGCAAAGTA AGAAAAAGTT 81177 .......... .......... .......... .......... .......... .......... 580 GGGAAAAGAA AGGTTTAAAA TTAACTAAAA GTAAATAAAA AAGATATGTC ATCTTTTTCT 81237 .......... .......... .......... .......... .......... .......... 580 CAAAATTTAC TTTTCTTTTC ATCTTGTGTG CATGCATGCA TGATAGAAAA AAGTTATTCT 81297 .......... .......... .......... .......... .......... .......... 580 CTTCAATGGC AATGACCTTT ATTGATATAC ATTAACAAAT TAACTGAATA TCTATAAATA 81357 .......... .......... .......... .......... .......... .......... 580 TTTGATTGCA AGTTAAATTA CTATTATAAA ATTAATTTAA AATCGTCATA AAAATTCATA 81417 .......... .......... .......... .......... .......... .......... 580 AATTTCAAAT TTTTAATTAA ATTTTTTTAT TGAGAGGAAT CTCAGCTTTT GTAAAAGATA 81477 .......... .......... .......... .......... .......... .......... 580 AAAGTAGTTC ATGTTATCAT TGCTTAATCA ACAAATATGT GCATCATTAA CTTTATACTC 81537 .......... .......... .......... .......... .......... .......... 580 TCTCTGTCCT CTAATTATTT ATCCATTTTT TTCTTTTTAG TTATTCCTAA TTACTTGTTC 81597 .......... .......... .......... .......... .......... .......... 580 ATTTTGATAA ATTTAGACGA GACAAATATC TTTTACCCAT TGTACCCTCA GCTAATTACA 81657 || || .......... ......CCGG TACCC..... .......... .......... .......... 589 TTGAAAAAGT AGAATTTTTT AAAAATTTTA AATTTTTAGT TCATTCAGTT CATAATTTAT 81717 .......... .......... .......... .......... .......... .......... 589 AGGGGTAAAA TGGTAAATTT TATATGTCAA TAATTACTCC CTCCGTCGAG AAATGTTTGT 81777 .......... .......... .......... .......... .......... .......... 589 CATGTTACGC TTATCGAAAG TTAATTTGAC TAATTTTCAA AGGTAAATTA GATACATTAA 81837 .......... .......... .......... .......... .......... .......... 589 TTCGATATTT CAAACAAAAA AAATTAGAGA TTCCAAAACT ATATGAAAAG TACTATCAAT 81897 .......... .......... .......... .......... .......... .......... 589 TACAATTTTT TCATATTAAT ATGATGAAAA AATGCATCTT AAAATGTTAG TCAAATTTTT 81957 .......... .......... .......... .......... .......... .......... 589 TATAATTTGA CTCTAAAAAT AAAAACTAAG ACAAATAATA CCGGACGAAG AAAATATTTT 82017 .......... .......... .......... .......... .......... .......... 589 CTTAATAGTA ATATTAATTT AAAAGTGAAC AAGTAAATAG AAACTTACTT TGATTAATTG 82077 .......... .......... .......... .......... .......... .......... 589 CTTAAATAAA TACTAATTTA AGTCGTTAAT GCATAAAACA TAAAGATAAA GTGTAAACGC 82137 .......... .......... .......... .......... .......... .......... 589 AGGCTACTTT ATAATGTACT ACATGAAAGT GCTTGATAAA AATATTCCCT TATGTGATTA 82197 ||| |||| |||| | .......... .......... .......... .......... AATTCGCCCT ATAGTGAGTC 609 TTA-TATATT TTATTGAGTT TATTTTT 82223 || || | | | | || | |||| GTATTACAAT TCACTGGCCG TGNTTTT 636 hqPGS_C08HBa0320P23.1+_SGN-U344884+ (80317 80359,80502 80955) ******************************************************************************** EST sequence 12 +strand 911 n (File: SGN-U328267+) 1 TGAATCAACT AAAAGTGGTT ACAATGATCT TAAACGAGGT CTTAAGGTTG TATACATCAG 61 TATACGCGAT TAATCGCATG GTGAATACAG AAACAAAGTT AGGGGATTTG TGTTTACCCT 121 CTGGGGTCCA ACTCATATTG GCAACAATGT TAGTGCATCA TGATACTGAA ATATGGGGAG 181 ATGATGCAAT GGAGTTTATG CCAGAGAGAT TTAGTGAAGG AATATCAAAA GCAACAAAAG 241 GACAAGTTGT ATTTTTTCCA TTTAGTTGGG GTCCAAGAAT ATGTATTGGG CAAAATTTTG 301 CTATGTTAGA GGCAAAAATG GCAATGGTCA TGATTCTAAA ACATTATGCA TTTGAACTCT 361 CTCCATCTTA TGCTCATGCT CCTCACCCAT TGTTGCTTCA ACCTCAATAT GGTGCTCAAT 421 TGATCATGCA CAAGTTGTAG AAGTGGTTAT CACGTGTTGT CTTTTGAATC ATGTTATATC 481 CTTTATTTAT TGTTGGGATA ATGTCCAAGT ACCCCCTTAG CCTATGTCCA AAATCTCAGA 541 GATACACTTA TACCATACTA AGATCTTATT ACCCCCTGAA CTTATTTATT AATAATTTTT 601 TACCCCTTTT AGACCTACGT GGCACTATCT TGTGGGCCCA ATGGTTGTTG ACTTTTTTTT 661 TAAACTAGTG CCACGTAGGC TAAAAAGGGG TAGAAAATTA CTTATAAAAT AAGTTCAGGG 721 GGGTAATAGG ACCTTAGTAT AGTATAAGTG TGTCTCTGGA ATTTCGGGCA TAGGTTGAGG 781 GGGTACTTGT GCATTATCCC TTTATTGTTC TTTAATTATA GTTCAAGTGA AGTCATATGT 841 TGTTTTGTAT AAGACTGGAG AATTTTATAA TAATAATATT AGTGTACTTT ATGTTTATGA 901 GAAAAAAAAA A Predicted gene structure (within gDNA segment 81863 to 88562): Exon 1 83453 83458 ( 6 n); cDNA 500 505 ( 6 n); score: 0.833 Intron 1 83459 88105 (4647 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 88106 88403 ( 298 n); cDNA 506 802 ( 297 n); score: 0.794 PPA cDNA 900 911 MATCH C08HBa0320P23.1+ SGN-U328267+ 0.794 304 0.334 C PGS_C08HBa0320P23.1+_SGN-U328267+ (83453 83458,88106 88403) Alignment (genomic DNA sequence = upper lines): AATGGCATAG CCTTCTAAAG GTGGGTGTAT GTGGCACATT TTAGAGCAAA TTAAAACTAA 83512 |||| | AATGTC.... .......... .......... .......... .......... .......... 505 TTAAGTGAAG CACCAAAAGG ACTTTTAAAC TTAATGTATA TCTTGTTCTT TGGTATATAC 83572 .......... .......... .......... .......... .......... .......... 505 TAAAAGTGGA AGGCTTTAAC CTTTTATCAA TAATTGTTAT CATCATGAGT CCATGACTCT 83632 .......... .......... .......... .......... .......... .......... 505 CATCTCATCC ACTAATTAAG TGGTGGAAGA AAAATGAAAG AATATGATAG TTCAGTTAAT 83692 .......... .......... .......... .......... .......... .......... 505 TGACTATTTA AATTTTTGTT TTATTATTAA AAATTCGATG TTCCATTTTA AAATGTTAAT 83752 .......... .......... .......... .......... .......... .......... 505 CTAGCCTTCT CCATTTGTAC AGAAAAATTT ATGTAGGAAG GAAAATAGAG GGTAAGAGTG 83812 .......... .......... .......... .......... .......... .......... 505 ATTTCCCCTT TCTCTTTTTT CCCTCATTTC AAGTGCAAAG TAGTCAAATA GAGGTTTTGT 83872 .......... .......... .......... .......... .......... .......... 505 ACTCCTCACT CACCGTAAAA AAAACAATTT AGCAGCAATA AATATAGATA TTAATAAATA 83932 .......... .......... .......... .......... .......... .......... 505 GTGCTAAAGT GTTACCGACA TTAGTTAAGT GTCATTAGAA TCAATATCAC TAAGGGACAT 83992 .......... .......... .......... .......... .......... .......... 505 ATATATAAAA AGTATTAATT GCTGCTAAAA ATATATATTT AACAATAAAT GGAAATTAAT 84052 .......... .......... .......... .......... .......... .......... 505 TATCCTTAAT AATCATTTTT GATGCCGTGC TTTCGACCCA ATAAAACATG TAATCATATC 84112 .......... .......... .......... .......... .......... .......... 505 TATTGTTTCA TTGTATTCAA CTTAAATACC TTAAACAAAG AAAATAATAA TGAAAAGATG 84172 .......... .......... .......... .......... .......... .......... 505 GTGTTTCTTG ACTTTAACCA AAAGTGTGTA TCAAAGTGTC ACTTCCCCAA ACTTCAGGGA 84232 .......... .......... .......... .......... .......... .......... 505 CCTAAGTGAA AAGCACCTCT TACAAGAACC GCATAATACA AGGCGTGATT CTCGCGGGTG 84292 .......... .......... .......... .......... .......... .......... 505 AACACCAAAA AAGGTTACCA CTTTTACCCT AGAAAAGGTA TTCCTATATA TCACAAAAGA 84352 .......... .......... .......... .......... .......... .......... 505 ATTTATTAGT AATTTTTTAA AAAAATATGA ATTTACGTCA AAAGGTCCTA CATTAGAAGT 84412 .......... .......... .......... .......... .......... .......... 505 AGAGTGTCTA AGTCAAAAAA TTTCGAATAT AAAAAAATAA ACACACAAAA GCTAAGAAGA 84472 .......... .......... .......... .......... .......... .......... 505 TTCACATACA TTTGTGATAT ATACATTTTC TTTTAAAACG AAAAGGGAGA ATAGTTTGAA 84532 .......... .......... .......... .......... .......... .......... 505 AAATACTAAA ACTTTTGATC GAAATTATTG TTACGATACC AAACTTTATA AATAAACTTT 84592 .......... .......... .......... .......... .......... .......... 505 TATCTCTAAA CTATCTAATA GTGTATTTTA AAGATATATA TGTGCCCACG TGGACACATT 84652 .......... .......... .......... .......... .......... .......... 505 ACTATTATAA TTATGCAATG GTATTTTTTA TGTCCACGTG GACACATATA TATATTTAAA 84712 .......... .......... .......... .......... .......... .......... 505 ATACATTATT AAATAGTGCA GGAATAAAAG ATTCTTTCCA AAATTTGGTA TAATAACAAT 84772 .......... .......... .......... .......... .......... .......... 505 AATTTCGATC GAAATTCAAA TATATATTTC AAACATTTTT CCTAAAAGAA AAACAAACAA 84832 .......... .......... .......... .......... .......... .......... 505 AATTCAATAT ACAAACAAAT TTTTCAATCG TAATCCTAGT AAAAAGCAAC ATACATACAT 84892 .......... .......... .......... .......... .......... .......... 505 AAATCATAAT CAACGCATGA CACATTATAT ATTGTGTCTG CAACTACTGA TCTAAATGTC 84952 .......... .......... .......... .......... .......... .......... 505 TGAATTGAAA ACAAAAAACT GGGATTTTGA TGTAACAAAC CATATATACA AAAAAATTAC 85012 .......... .......... .......... .......... .......... .......... 505 TTTTACCTTT CTATGTTTGC TGCTTCATAG ATATAAGAGA AAGGAAGGGA GGGGACCAAA 85072 .......... .......... .......... .......... .......... .......... 505 TTAATATAAA AATTAATTCA ATGATTTTGC AATCGAGTGC TTTATGATTG ACACTTTAAT 85132 .......... .......... .......... .......... .......... .......... 505 CAATGAACTG ACACAACAAT TAACCATGCA TGCATTCTTA TTCATTCATT TCGATAAAAA 85192 .......... .......... .......... .......... .......... .......... 505 AAAAAAAACA CTCATCTGAC AGTATACGTA TATATTGTCT TATGCACCAT CAAATTTTCA 85252 .......... .......... .......... .......... .......... .......... 505 GGCATGACTA AGGGTTAAAT TGGCAAAGTT GTGATTTTTA TTAGAGAAAT TCATTAAAAT 85312 .......... .......... .......... .......... .......... .......... 505 TAGGGATAAT GACAATTTGT TGATACTAAG CAATCGACAA TGGAAGATTA AAGAAGAAGA 85372 .......... .......... .......... .......... .......... .......... 505 AGAAGAAGAA GAAATCTGTT ATGGAGAGAA TTTCTCCCTC ATGCTTTTAC AATGTGTTAA 85432 .......... .......... .......... .......... .......... .......... 505 CTAACTATTA CAATGCATAA CACTCACATA TATATACAAT TAGCTAATCA ATGGAAATGA 85492 .......... .......... .......... .......... .......... .......... 505 ACCAATAACA GAATGACAGC TGGCTAACAA ACTAAACAAA CTAAACTAAC AACTAGTTAA 85552 .......... .......... .......... .......... .......... .......... 505 CTAACTAATT GAGCTCTAAC TAACTAGTTA TTCAACTCTT ATCAATACTC TTAGCATATT 85612 .......... .......... .......... .......... .......... .......... 505 CCTCAATACC CCCCTTCAAG CTAGGAGATA TGAAGATGTT CTTCATTCGG AGCTTGGAAA 85672 .......... .......... .......... .......... .......... .......... 505 CCAGATATTC ATGTTGCAAT CGACCAAGTC CTTTAGTCAG TACATCAGCA GGTTGTTCAG 85732 .......... .......... .......... .......... .......... .......... 505 TAGTAGCCAA ATGTTGAATG GATATATCAC CTCTTTGAAC CTTTTCTCTA ATAAAGTGAC 85792 .......... .......... .......... .......... .......... .......... 505 AATCAATGTC AATATGTTTG GTCCTCTCAT GGAACACAGG GTTGGATGCA ATTTGGATAG 85852 .......... .......... .......... .......... .......... .......... 505 CGGCAGTACT GTCACTATAT ACAACAATAG GCAAGACAGT AGGTATGTCT AATTCACGAA 85912 .......... .......... .......... .......... .......... .......... 505 AGAGACCAAG TATCTATGTA ACTTCAGCAA CAGTAGATGC CAGGCTTCTG TATTCTGCTT 85972 .......... .......... .......... .......... .......... .......... 505 CAGCAGAACT CCTGGAGACT GTAGACTGTT TCTTAGACTT CCAGGAAAGT AAAGACTCTC 86032 .......... .......... .......... .......... .......... .......... 505 CAAATTTAAC CATATATCCA GTAATGGACC TTCTAGTATC AGGGCATGAT CCCCAATCAG 86092 .......... .......... .......... .......... .......... .......... 505 CATCACAAAA TGCTTGTAAA GAACCAAAAT GCTGAGCAGA CAACAAAACA CCTAGGCCAG 86152 .......... .......... .......... .......... .......... .......... 505 GTTATTGTTT AATATGTCTA ACAACTCTAA TAGCAGCATT CATATGAGAT TGCTTGGGAG 86212 .......... .......... .......... .......... .......... .......... 505 CATTCATGAA CTGACTTAAG TTTTGAACAG CATATGACAA GTCAGGTCTA GTAATGGTTA 86272 .......... .......... .......... .......... .......... .......... 505 AGTAGATCAA TCTTCCAACC AATCTTTGAT ACTCACCAAT ATCTGATAGT ACAGGATCAG 86332 .......... .......... .......... .......... .......... .......... 505 ATGTAACTCC TACATACTTG TCAAAAACTA CAGTAGTGAG CTTTCCATTC AGTTCAACAG 86392 .......... .......... .......... .......... .......... .......... 505 GTGTGGCAAT AGGTTTAGAT CCACCTAAAC CCAAGTCTGA AATAATCTCT AAGGCATACT 86452 .......... .......... .......... .......... .......... .......... 505 TTCTCTGATG CATGAGAATT CCTTCATTGG TTCTGGCAAA TTCAATCCCT AGGAAATATC 86512 .......... .......... .......... .......... .......... .......... 505 TCAATGATCC TAGATTTTTG ATCTTGAAGT TATCCTTTAG CACTTGTTTG GTGTCATTGA 86572 .......... .......... .......... .......... .......... .......... 505 TTAATGTGAT GTTACTACCA GTGACTAACA AATCATCAAC ATAAATCAAA ACAATCACAA 86632 .......... .......... .......... .......... .......... .......... 505 TGCCTTCACT AGACTTCTTG ATCAATAGGG AATAATCCAA ATGGCTTTGC TGAAATCCAG 86692 .......... .......... .......... .......... .......... .......... 505 CAACTAATAA TGCCTGAGTC AACTTTACAT TCCACTGTCG TGAAGCTTGC TTAAGTCCAT 86752 .......... .......... .......... .......... .......... .......... 505 ACAATGACTT AAGCAACTTA CACACATGTT GATCCCCAGC ATGCATATGA GAGAATCCTT 86812 .......... .......... .......... .......... .......... .......... 505 GAGGTATCTG CATATAGACT TCTTCTACTA AGTCACCTTG CAAAAATGCA TTATAAACAT 86872 .......... .......... .......... .......... .......... .......... 505 CCATCTGTTG GACATCCCAT CCTTTAGATG CAGCTAGAGT AAGCACTGTT CTAACTGTGA 86932 .......... .......... .......... .......... .......... .......... 505 CCATTTTAAC AACTGGAGAA AATGTCTCCT GGTAGTCTAA ACCTTCTTGC TGACTGTATC 86992 .......... .......... .......... .......... .......... .......... 505 CCTTGGCTAC AAGTCTGGCT TTGAATCTCT CAACTTCACC ATTTGCCTTG TACTTAATCT 87052 .......... .......... .......... .......... .......... .......... 505 TGTACACCCA TTTGCAACCT ATAGCCTTTT TTCCAACAGG TAAAGTTACT ACCTCCCAAG 87112 .......... .......... .......... .......... .......... .......... 505 TCTTATTGTC TTCTAATGCC TGTATCTCTT CTTTCATAGC TGTGACCCAC CTCTTATCCT 87172 .......... .......... .......... .......... .......... .......... 505 TGGCAGCTTG ATGATAGAAC TTAGGCTCAG TGTCGATTTA ACGATTAGCA ATGCAACATT 87232 .......... .......... .......... .......... .......... .......... 505 GATAAGAGGG AGACAAGTTA CTGTAAACAA TGCTGTTTTT CAGTGAGTAC AAACAGTTAG 87292 .......... .......... .......... .......... .......... .......... 505 ACTTTGATCT GGACTTGAAT GTAGTAACAA AATCCTTTTG CCAAAGTGGA GGCCTAGAAG 87352 .......... .......... .......... .......... .......... .......... 505 TACTAGTTGA TTGTCGTCTG TTGGAGCTCA AAGATGAATC ATCTAGATTC ATTAAAAACC 87412 .......... .......... .......... .......... .......... .......... 505 ACATCTCTAC TGACAAAGAA GACCTTATTT TGTAGATCAT AAAGTTTGTA TCCCTTCTGT 87472 .......... .......... .......... .......... .......... .......... 505 GTAGTGCCAT AACCCATAAG TACTGACTTG ATGGCTCTAG AACCAAACTT ATCAGATCTC 87532 .......... .......... .......... .......... .......... .......... 505 AACAATGTAG TTGCATGACA CAAACATCCA ATGATCTTCA TGTAGGACAA ATCTGGTAGC 87592 .......... .......... .......... .......... .......... .......... 505 TTTCCAAACA GCATTTCAAA AGGAGACTTA TTAAGTAACA CAGTGGATGA AATTCTATTG 87652 .......... .......... .......... .......... .......... .......... 505 ATGATATGAA CAGCAGCTAA AATACATTCT CCCCAAAACT TGATTGGGAT ATTGCCTTGA 87712 .......... .......... .......... .......... .......... .......... 505 AATCGAATAG CTCTTGTTGT CTCCATTATA TGTCTATGTT TTCTTTCCAC TACACCATTT 87772 .......... .......... .......... .......... .......... .......... 505 TGTTGAGGTG TATATGGACA AGAGCTCTGA TACCATGACA ATTTGTTGAT ACTATGCAAT 87832 .......... .......... .......... .......... .......... .......... 505 CGACAATGGA AGATTAAAGA AGAAGAAGAA GGAAGAAGAA ATTTGTTATG GAGAGAATTT 87892 .......... .......... .......... .......... .......... .......... 505 CTCCCTCATG CTTTTACAAT GTGTTAACTA ACTATTACAA TGCATAACAC TCACATATAT 87952 .......... .......... .......... .......... .......... .......... 505 ATACAATTAG CTAATCAATG GAAATGAACC AATAACAGAA TGACAGGTGG CTAACAAACT 88012 .......... .......... .......... .......... .......... .......... 505 AAACAAACTA AACTAACAAC TAGTTAACTA ACTAATTGAG CTCTAACTAA CTAGTTATTC 88072 .......... .......... .......... .......... .......... .......... 505 AACTATTATC AATACTCTTA GCATATTCCT CAATAAGTAC CCCCTCAACC TATGCCCGAA 88132 |||||| ||||| | || |||| || || .......... .......... .......... ...CAAGTAC CCCCTTAGCC TATGTCCAAA 532 ATCCCAAAGA CACACTTATA CTATACTAAG GTCCTATTAC CCCCCTGAAC TTATTTTATA 88192 ||| || ||| ||||||||| | |||||||| || ||||| |||||||||| ||| ||||| ATCTCAGAGA TACACTTATA CCATACTAAG ATCTTATTA- CCCCCTGAAC TTA-TTTATT 590 AGTAATTTTT TACCCCTTTT TAGCCTACGT GGCACTAGTT TGAAAAAAAA GTCAACCTTT 88252 | |||||||| |||||||||| ||||||| ||||||| | || | | || AATAATTTTT TACCCCTTTT AGACCTACGT GGCACTATCT TGTGGGCCCA ATGGTTGTTG 650 GTTGGGCCCA CAAAATAGTG CCACGTAGGT CGAAAAGGGG TAAAAAATTA TTAATAAAAT 88312 | ||| ||||| ||||||||| |||||||| || ||||||| | ||||||| ACTTTTTTTT TAAACTAGTG CCACGTAGGC TAAAAAGGGG TAGAAAATTA CTTATAAAAT 710 AAGTTCA-GG GGGTAATAGG ACCTTAGTAT AGTATAAGTG TGTCTCTGAG ATTTCGGGCA 88371 ||||||| || |||||||||| |||||||||| |||||||||| |||||||| |||||||||| AAGTTCAGGG GGGTAATAGG ACCTTAGTAT AGTATAAGTG TGTCTCTGGA ATTTCGGGCA 770 TAGGTTAAAG AAGTACTTGG ACATTATCCC TT 88403 |||||| | | ||||||| ||||||||| || TAGGTTGAGG GGGTACTTGT GCATTATCCC TT 802 hqPGS_C08HBa0320P23.1+_SGN-U328267+ (88106 88403) ******************************************************************************** EST sequence 24 -strand 911 n (File: SGN-U328267-) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAAAC ACAAATCCCC TAACTTTGTT TCTGTATTCA CCATGCGATT 841 AATCGCGTAT ACTGATGTAT ACAACCTTAA GACCTCGTTT AAGATCATTG TAACCACTTT 901 TAGTTGATTC A Predicted gene structure (within gDNA segment 85667 to 88562): Exon 1 86661 86675 ( 15 n); cDNA 112 126 ( 15 n); score: 0.733 Intron 1 86676 88109 (1434 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 88110 88427 ( 318 n); cDNA 127 441 ( 315 n); score: 0.896 PPA cDNA 12 1 MATCH C08HBa0320P23.1+ SGN-U328267- 0.896 333 0.366 C PGS_C08HBa0320P23.1+_SGN-U328267- (86661 86675,88110 88427) Alignment (genomic DNA sequence = upper lines): GGAATAATCC AAATGGCTTT GCTGAAATCC AGCAACTAAT AATGCCTGAG TCAACTTTAC 86720 || ||||| | | | | GGGATAATGC ACAAG..... .......... .......... .......... .......... 126 ATTCCACTGT CGTGAAGCTT GCTTAAGTCC ATACAATGAC TTAAGCAACT TACACACATG 86780 .......... .......... .......... .......... .......... .......... 126 TTGATCCCCA GCATGCATAT GAGAGAATCC TTGAGGTATC TGCATATAGA CTTCTTCTAC 86840 .......... .......... .......... .......... .......... .......... 126 TAAGTCACCT TGCAAAAATG CATTATAAAC ATCCATCTGT TGGACATCCC ATCCTTTAGA 86900 .......... .......... .......... .......... .......... .......... 126 TGCAGCTAGA GTAAGCACTG TTCTAACTGT GACCATTTTA ACAACTGGAG AAAATGTCTC 86960 .......... .......... .......... .......... .......... .......... 126 CTGGTAGTCT AAACCTTCTT GCTGACTGTA TCCCTTGGCT ACAAGTCTGG CTTTGAATCT 87020 .......... .......... .......... .......... .......... .......... 126 CTCAACTTCA CCATTTGCCT TGTACTTAAT CTTGTACACC CATTTGCAAC CTATAGCCTT 87080 .......... .......... .......... .......... .......... .......... 126 TTTTCCAACA GGTAAAGTTA CTACCTCCCA AGTCTTATTG TCTTCTAATG CCTGTATCTC 87140 .......... .......... .......... .......... .......... .......... 126 TTCTTTCATA GCTGTGACCC ACCTCTTATC CTTGGCAGCT TGATGATAGA ACTTAGGCTC 87200 .......... .......... .......... .......... .......... .......... 126 AGTGTCGATT TAACGATTAG CAATGCAACA TTGATAAGAG GGAGACAAGT TACTGTAAAC 87260 .......... .......... .......... .......... .......... .......... 126 AATGCTGTTT TTCAGTGAGT ACAAACAGTT AGACTTTGAT CTGGACTTGA ATGTAGTAAC 87320 .......... .......... .......... .......... .......... .......... 126 AAAATCCTTT TGCCAAAGTG GAGGCCTAGA AGTACTAGTT GATTGTCGTC TGTTGGAGCT 87380 .......... .......... .......... .......... .......... .......... 126 CAAAGATGAA TCATCTAGAT TCATTAAAAA CCACATCTCT ACTGACAAAG AAGACCTTAT 87440 .......... .......... .......... .......... .......... .......... 126 TTTGTAGATC ATAAAGTTTG TATCCCTTCT GTGTAGTGCC ATAACCCATA AGTACTGACT 87500 .......... .......... .......... .......... .......... .......... 126 TGATGGCTCT AGAACCAAAC TTATCAGATC TCAACAATGT AGTTGCATGA CACAAACATC 87560 .......... .......... .......... .......... .......... .......... 126 CAATGATCTT CATGTAGGAC AAATCTGGTA GCTTTCCAAA CAGCATTTCA AAAGGAGACT 87620 .......... .......... .......... .......... .......... .......... 126 TATTAAGTAA CACAGTGGAT GAAATTCTAT TGATGATATG AACAGCAGCT AAAATACATT 87680 .......... .......... .......... .......... .......... .......... 126 CTCCCCAAAA CTTGATTGGG ATATTGCCTT GAAATCGAAT AGCTCTTGTT GTCTCCATTA 87740 .......... .......... .......... .......... .......... .......... 126 TATGTCTATG TTTTCTTTCC ACTACACCAT TTTGTTGAGG TGTATATGGA CAAGAGCTCT 87800 .......... .......... .......... .......... .......... .......... 126 GATACCATGA CAATTTGTTG ATACTATGCA ATCGACAATG GAAGATTAAA GAAGAAGAAG 87860 .......... .......... .......... .......... .......... .......... 126 AAGGAAGAAG AAATTTGTTA TGGAGAGAAT TTCTCCCTCA TGCTTTTACA ATGTGTTAAC 87920 .......... .......... .......... .......... .......... .......... 126 TAACTATTAC AATGCATAAC ACTCACATAT ATATACAATT AGCTAATCAA TGGAAATGAA 87980 .......... .......... .......... .......... .......... .......... 126 CCAATAACAG AATGACAGGT GGCTAACAAA CTAAACAAAC TAAACTAACA ACTAGTTAAC 88040 .......... .......... .......... .......... .......... .......... 126 TAACTAATTG AGCTCTAACT AACTAGTTAT TCAACTATTA TCAATACTCT TAGCATATTC 88100 .......... .......... .......... .......... .......... .......... 126 CTCAATAAGT ACCCCCTCAA CCTATGCCCG AAATCCCAAA GACACACTTA TACTATACTA 88160 | |||||||||| |||||||||| |||| ||| | |||||||||| |||||||||| .........T ACCCCCTCAA CCTATGCCCG AAATTCCAGA GACACACTTA TACTATACTA 177 AGGTCCTATT ACCCCCCTGA ACTTATTTTA TAAGTAATTT TTTACCCCTT TTTAGCCTAC 88220 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AGGTCCTATT ACCCCCCTGA ACTTATTTTA TAAGTAATTT TCTACCCCTT TTTAGCCTAC 237 GTGGCACTAG TTTGAAAAAA AAGTCAACCT TTGTTGGGCC CACAAAATAG TGCCACGTAG 88280 |||||||||| ||| |||||| |||||||| ||||||| ||||| |||| |||||||||| GTGGCACTAG TTTAAAAAAA AAGTCAACAA CCATTGGGCC CACAAGATAG TGCCACGTAG 297 GTCGAAAAGG GGTAAAAAAT TATTAATAAA ATAAGTTCAG GGGGTAATAG GACCTTAGTA 88340 ||| |||||| |||||||||| ||||||| || |||||||||| ||||||||| || ||||||| GTCTAAAAGG GGTAAAAAAT TATTAAT-AA ATAAGTTCAG GGGGTAATAA GATCTTAGTA 356 TAGTATAAGT GTGTCTCTGA GATTTCGGGC ATAGGTTAAA GAAGTACTTG GACATTATCC 88400 | |||||||| || ||||||| ||||| || | ||||| ||| | ||||||| |||||||||| TGGTATAAGT GTATCTCTGA GATTTTGGAC ATAGGCTAAG GGGGTACTTG GACATTATCC 416 CTTAAAATTA AGTAAATATA CGAAAAT 88427 | | ||| | | || ||| || || C-AACAATAA ATAAAGGATA -TAACAT 441 hqPGS_C08HBa0320P23.1+_SGN-U328267- (88110 88427) Total number of EST alignments reported: 31 ________________________________________________________________________________ Predicted gene locations (18) in segment 1 to 88562: PGL 1 (+ strand): 1 750 AGS-1 (1 750) SCR (e 1.000) Exon 1 1 750 ( 750 n); score: 1.000 PGS (1 552) SGN-U337363+ PGS (91 750) SGN-U321387- 3-phase translation of AGS-1 (+strand): . . . . . . 1 AAGCTTTACGTTCTTGGCGCTGGCTCTTACGGCAAAGTTTATTATGCAGTGAAGATGGAT K L Y V L G A G S Y G K V Y Y A V K M D S F T F L A L A L T A K F I M Q - R W I A L R S W R W L L R Q S L L C S E D G . . . . . . 61 CCTGTTTCGTTATGTGTTTCTGTTGCTGCTGTTAAATGTGCTGATATGAACCGTTCTGTT P V S L C V S V A A V K C A D M N R S V L F R Y V F L L L L L N V L I - T V L F S C F V M C F C C C C - M C - Y E P F C . . . . . . 121 TCACTCCAACGAGAAGCAGAAATCTTGACAACCCTCAAAGATTCACCTTACGTGGTTCAG S L Q R E A E I L T T L K D S P Y V V Q H S N E K Q K S - Q P S K I H L T W F S F T P T R S R N L D N P Q R F T L R G S . . . . . . 181 TTCATTGGATCAGACGTTAGCATCGATAACGGTAATGTCTCAACTTACAATCTGTTTCTT F I G S D V S I D N G N V S T Y N L F L S L D Q T L A S I T V M S Q L T I C F L V H W I R R - H R - R - C L N L Q S V S . . . . . . 241 GAGTATGCATATGGTGGATCGCTACACGATTTGATCATTAATTCGAAGATGAGAAGGATA E Y A Y G G S L H D L I I N S K M R R I S M H M V D R Y T I - S L I R R - E G Y - V C I W W I A T R F D H - F E D E K D . . . . . . 301 CGGATGTCTGAAGTGGAAGTAGGTTTCTATGCATATCAACTCTTAAAGGGTATTCAACAC R M S E V E V G F Y A Y Q L L K G I Q H G C L K W K - V S M H I N S - R V F N T T D V - S G S R F L C I S T L K G Y S T . . . . . . 361 GTTCATGAGAAAGGGTGGGTTCATTGTGATATTAAACCTGCTAATGTTTTGATTTTCAAC V H E K G W V H C D I K P A N V L I F N F M R K G G F I V I L N L L M F - F S T R S - E R V G S L - Y - T C - C F D F Q . . . . . . 421 AACGCTGAACGTGGTGGGATGCACAAGTTAAAGTTGGCTGACTTTGGATTGTCGTTGAGA N A E R G G M H K L K L A D F G L S L R T L N V V G C T S - S W L T L D C R - E Q R - T W W D A Q V K V G - L W I V V E . . . . . . 481 GTTCCCGAAGGTGTGGCATATATGACTGGTGCTGCGATGAGCAACAGAGGGACTCTACCT V P E G V A Y M T G A A M S N R G T L P F P K V W H I - L V L R - A T E G L Y L S S R R C G I Y D W C C D E Q Q R D S T . . . . . . 541 TACGCGCCCCCAGAATCTTTGATCAGTGGTTTTCATGGCAGGAGTTATGATATATGGTCG Y A P P E S L I S G F H G R S Y D I W S T R P Q N L - S V V F M A G V M I Y G R L R A P R I F D Q W F S W Q E L - Y M V . . . . . . 601 TTAGGGTGTACTGTGGCAGAGATGATGACTGGGTGTCGCGTTTGGATTTATCGCGACACT L G C T V A E M M T G C R V W I Y R D T - G V L W Q R - - L G V A F G F I A T L V R V Y C G R D D D W V S R L D L S R H . . . . . . 661 AAGGATTTGCAATGGAAGATTATGAATGAAGAACCAATGGTTCCTAGTGATGTTTCTGAG K D L Q W K I M N E E P M V P S D V S E R I C N G R L - M K N Q W F L V M F L R - G F A M E D Y E - R T N G S - - C F - . . . 721 ATTGCCAGAGATTTTTTGTACAAGTGTTTG I A R D F L Y K C L L P E I F C T S V D C Q R F F V Q V F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-1_AGS-1_PPS_1 (1 750) (frame '1'; 750 bp, 250 residues) 1 KLYVLGAGSY GKVYYAVKMD PVSLCVSVAA VKCADMNRSV SLQREAEILT TLKDSPYVVQ 61 FIGSDVSIDN GNVSTYNLFL EYAYGGSLHD LIINSKMRRI RMSEVEVGFY AYQLLKGIQH 121 VHEKGWVHCD IKPANVLIFN NAERGGMHKL KLADFGLSLR VPEGVAYMTG AAMSNRGTLP 181 YAPPESLISG FHGRSYDIWS LGCTVAEMMT GCRVWIYRDT KDLQWKIMNE EPMVPSDVSE 241 IARDFLYKCL 3-phase translation of AGS-1 (-strand): . . . . . . 750 CAAACACTTGTACAAAAAATCTCTGGCAATCTCAGAAACATCACTAGGAACCATTGGTTC Q T L V Q K I S G N L R N I T R N H W F K H L Y K K S L A I S E T S L G T I G S N T C T K N L W Q S Q K H H - E P L V . . . . . . 690 TTCATTCATAATCTTCCATTGCAAATCCTTAGTGTCGCGATAAATCCAAACGCGACACCC F I H N L P L Q I L S V A I N P N A T P S F I I F H C K S L V S R - I Q T R H P L H S - S S I A N P - C R D K S K R D T . . . . . . 630 AGTCATCATCTCTGCCACAGTACACCCTAACGACCATATATCATAACTCCTGCCATGAAA S H H L C H S T P - R P Y I I T P A M K V I I S A T V H P N D H I S - L L P - K Q S S S L P Q Y T L T T I Y H N S C H E . . . . . . 570 ACCACTGATCAAAGATTCTGGGGGCGCGTAAGGTAGAGTCCCTCTGTTGCTCATCGCAGC T T D Q R F W G R V R - S P S V A H R S P L I K D S G G A - G R V P L L L I A A N H - S K I L G A R K V E S L C C S S Q . . . . . . 510 ACCAGTCATATATGCCACACCTTCGGGAACTCTCAACGACAATCCAAAGTCAGCCAACTT T S H I C H T F G N S Q R Q S K V S Q L P V I Y A T P S G T L N D N P K S A N F H Q S Y M P H L R E L S T T I Q S Q P T . . . . . . 450 TAACTTGTGCATCCCACCACGTTCAGCGTTGTTGAAAATCAAAACATTAGCAGGTTTAAT - L V H P T T F S V V E N Q N I S R F N N L C I P P R S A L L K I K T L A G L I L T C A S H H V Q R C - K S K H - Q V - . . . . . . 390 ATCACAATGAACCCACCCTTTCTCATGAACGTGTTGAATACCCTTTAAGAGTTGATATGC I T M N P P F L M N V L N T L - E L I C S Q - T H P F S - T C - I P F K S - Y A Y H N E P T L S H E R V E Y P L R V D M . . . . . . 330 ATAGAAACCTACTTCCACTTCAGACATCCGTATCCTTCTCATCTTCGAATTAATGATCAA I E T Y F H F R H P Y P S H L R I N D Q - K P T S T S D I R I L L I F E L M I K H R N L L P L Q T S V S F S S S N - - S . . . . . . 270 ATCGTGTAGCGATCCACCATATGCATACTCAAGAAACAGATTGTAAGTTGAGACATTACC I V - R S T I C I L K K Q I V S - D I T S C S D P P Y A Y S R N R L - V E T L P N R V A I H H M H T Q E T D C K L R H Y . . . . . . 210 GTTATCGATGCTAACGTCTGATCCAATGAACTGAACCACGTAAGGTGAATCTTTGAGGGT V I D A N V - S N E L N H V R - I F E G L S M L T S D P M N - T T - G E S L R V R Y R C - R L I Q - T E P R K V N L - G . . . . . . 150 TGTCAAGATTTCTGCTTCTCGTTGGAGTGAAACAGAACGGTTCATATCAGCACATTTAAC C Q D F C F S L E - N R T V H I S T F N V K I S A S R W S E T E R F I S A H L T L S R F L L L V G V K Q N G S Y Q H I - . . . . . . 90 AGCAGCAACAGAAACACATAACGAAACAGGATCCATCTTCACTGCATAATAAACTTTGCC S S N R N T - R N R I H L H C I I N F A A A T E T H N E T G S I F T A - - T L P Q Q Q Q K H I T K Q D P S S L H N K L C . . . 30 GTAAGAGCCAGCGCCAAGAACGTAAAGCTT V R A S A K N V K L - E P A P R T - S R K S Q R Q E R K A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 2310 2862 AGS-1 (2310 2862) SCR (e 0.992) Exon 1 2310 2862 ( 553 n); score: 0.992 PGS (2310 2862) SGN-U332599- 3-phase translation of AGS-1 (+strand): . . . . . . 2310 CGGTGCTACGAGTGATACAAACTCCGAGAATTCAACAAGGCCATTGTCGTTTTTATCCGC R C Y E - Y K L R E F N K A I V V F I R G A T S D T N S E N S T R P L S F L S A V L R V I Q T P R I Q Q G H C R F Y P . . . . . . 2370 CTTTTGAATCAAAGTTTCGAGCTGATCAGGACTTGGTTTTAAACCAAGAGACCTCAATAG L L N Q S F E L I R T W F - T K R P Q - F - I K V S S - S G L G F K P R D L N S P F E S K F R A D Q D L V L N Q E T S I . . . . . . 2430 CGCGCCAAGCTCGAGTTGGGTTAGACTCCCATCATCATTTCTGTCGAACGATCGGAAAAT R A K L E L G - T P I I I S V E R S E N A P S S S W V R L P S S F L S N D R K I A R Q A R V G L D S H H H F C R T I G K . . . . . . 2490 TTCTCGCAGTTCAGCCAACTGCTCATCATCTAACTTAACAGGTGCTTTATTGCTCATATT F S Q F S Q L L I I - L N R C F I A H I S R S S A N C S S S N L T G A L L L I F F L A V Q P T A H H L T - Q V L Y C S Y . . . . . . 2550 TCTCTGTGAAGCAATAAATCAAACACTTGATCTGCAGATTAAAATTGTCCTTCAAAGAAA S L - S N K S N T - S A D - N C P S K K L C E A I N Q T L D L Q I K I V L Q R K F S V K Q - I K H L I C R L K L S F K E . . . . . . 2610 GAATATCAATGGATACCCTTTTCCAACCAACTGGGTACTCTGTTTTCCTGCTATTCGTGC E Y Q W I P F S N Q L G T L F S C Y S C N I N G Y P F P T N W V L C F P A I R A R I S M D T L F Q P T G Y S V F L L F V . . . . . . 2670 CGTCCTCTTTCTCTTGCTGTTCTACTGACCTTTTGACTACTCTTTGCTCAATTTTGTGTC R P L S L A V L L T F - L L F A Q F C V V L F L L L F Y - P F D Y S L L N F V S P S S F S C C S T D L L T T L C S I L C . . . . . . 2730 ACTTTCGAATAGCTATTTTTCTTGGACTTGGTAATGGATCCACCAAATTCTATGAATTTG T F E - L F F L D L V M D P P N S M N L L S N S Y F S W T W - W I H Q I L - I C H F R I A I F L G L G N G S T K F Y E F . . . . . . 2790 TTGAATTACAAGGAAAAGTTATACAGATTTGTAGAATTGATATTGAAAGAAAATATTGAC L N Y K E K L Y R F V E L I L K E N I D - I T R K S Y T D L - N - Y - K K I L T V E L Q G K V I Q I C R I D I E R K Y - . . 2850 AACTTCTTCCCAA N F F P T S S Q Q L L P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-2_AGS-1_PPS_1 (2395 2697) (frame '2'; 300 bp, 100 residues) 1 SGLGFKPRDL NSAPSSSWVR LPSSFLSNDR KISRSSANCS SSNLTGALLL IFLCEAINQT 61 LDLQIKIVLQ RKNINGYPFP TNWVLCFPAI RAVLFLLLFY - >C08HBa0320P23.1+_PGL-2_AGS-1_PPS_2 (2567 2848) (frame '0'; 279 bp, 93 residues) 1 IKHLICRLKL SFKERISMDT LFQPTGYSVF LLFVPSSFSC CSTDLLTTLC SILCHFRIAI 61 FLGLGNGSTK FYEFVELQGK VIQICRIDIE RKY- 3-phase translation of AGS-1 (-strand): . . . . . . 2862 TTGGGAAGAAGTTGTCAATATTTTCTTTCAATATCAATTCTACAAATCTGTATAACTTTT L G R S C Q Y F L S I S I L Q I C I T F W E E V V N I F F Q Y Q F Y K S V - L F G K K L S I F S F N I N S T N L Y N F . . . . . . 2802 CCTTGTAATTCAACAAATTCATAGAATTTGGTGGATCCATTACCAAGTCCAAGAAAAATA P C N S T N S - N L V D P L P S P R K I L V I Q Q I H R I W W I H Y Q V Q E K - S L - F N K F I E F G G S I T K S K K N . . . . . . 2742 GCTATTCGAAAGTGACACAAAATTGAGCAAAGAGTAGTCAAAAGGTCAGTAGAACAGCAA A I R K - H K I E Q R V V K R S V E Q Q L F E S D T K L S K E - S K G Q - N S K S Y S K V T Q N - A K S S Q K V S R T A . . . . . . 2682 GAGAAAGAGGACGGCACGAATAGCAGGAAAACAGAGTACCCAGTTGGTTGGAAAAGGGTA E K E D G T N S R K T E Y P V G W K R V R K R T A R I A G K Q S T Q L V G K G Y R E R G R H E - Q E N R V P S W L E K G . . . . . . 2622 TCCATTGATATTCTTTCTTTGAAGGACAATTTTAATCTGCAGATCAAGTGTTTGATTTAT S I D I L S L K D N F N L Q I K C L I Y P L I F F L - R T I L I C R S S V - F I I H - Y S F F E G Q F - S A D Q V F D L . . . . . . 2562 TGCTTCACAGAGAAATATGAGCAATAAAGCACCTGTTAAGTTAGATGATGAGCAGTTGGC C F T E K Y E Q - S T C - V R - - A V G A S Q R N M S N K A P V K L D D E Q L A L L H R E I - A I K H L L S - M M S S W . . . . . . 2502 TGAACTGCGAGAAATTTTCCGATCGTTCGACAGAAATGATGATGGGAGTCTAACCCAACT - T A R N F P I V R Q K - - W E S N P T E L R E I F R S F D R N D D G S L T Q L L N C E K F S D R S T E M M M G V - P N . . . . . . 2442 CGAGCTTGGCGCGCTATTGAGGTCTCTTGGTTTAAAACCAAGTCCTGATCAGCTCGAAAC R A W R A I E V S W F K T K S - S A R N E L G A L L R S L G L K P S P D Q L E T S S L A R Y - G L L V - N Q V L I S S K . . . . . . 2382 TTTGATTCAAAAGGCGGATAAAAACGACAATGGCCTTGTTGAATTCTCGGAGTTTGTATC F D S K G G - K R Q W P C - I L G V C I L I Q K A D K N D N G L V E F S E F V S L - F K R R I K T T M A L L N S R S L Y . . 2322 ACTCGTAGCACCG T R S T L V A P H S - H Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-2_AGS-1_PPS_1 (2567 2310) (frame '2'; 258 bp, 86 residues) 1 FIASQRNMSN KAPVKLDDEQ LAELREIFRS FDRNDDGSLT QLELGALLRS LGLKPSPDQL 61 ETLIQKADKN DNGLVEFSEF VSLVAP PGL 3 (- strand): 9744 6474 AGS-1 (9744 9114,7521 7326,7112 6474) SCR (e 1.000 d 0.996 a 0.862,e 1.000 d 0.988 a 0.999,e 1.000) Exon 1 9744 9114 ( 631 n); score: 1.000 Intron 1 9113 7522 (1592 n); Pd: 0.996 Pa: 0.862 Exon 2 7521 7326 ( 196 n); score: 1.000 Intron 2 7325 7113 ( 213 n); Pd: 0.988 Pa: 0.999 Exon 3 7112 6474 ( 639 n); score: 1.000 PGS (9744 9114,7521 7326,7112 6474) SGN-U316479+ 3-phase translation of AGS-1 (-strand): . . . . . . 9744 ATAAAACCGAAGGTCTCAAATCACCGTCGACAACCACCGCTTCCGCCGCCATTTCCACGG I K P K V S N H R R Q P P L P P P F P R - N R R S Q I T V D N H R F R R H F H G K T E G L K S P S T T T A S A A I S T . . . . . . 9684 TTACACCGCCGGAGGACGTCCGTTTCCAAAAGTAATTAAATATGTCCACTCTCTACAATC L H R R R T S V S K S N - I C P L S T I Y T A G G R P F P K V I K Y V H S L Q S V T P P E D V R F Q K - L N M S T L Y N . . . . . . 9624 CTCTAATTTTCACCATTAAAAACCCAAAAGGCAGCCTTAAACCTCACACTTCCCTTCCTT L - F S P L K T Q K A A L N L T L P F L S N F H H - K P K R Q P - T S H F P S F P L I F T I K N P K G S L K P H T S L P . . . . . . 9564 CTTCTGTCCCGACTTTTAGGCTTCGTAAATTTCAAAATTTCTCAGTTCAATCCTCCATTT L L S R L L G F V N F K I S Q F N P P F F C P D F - A S - I S K F L S S I L H F S S V P T F R L R K F Q N F S V Q S S I . . . . . . 9504 CCTCATCCAATGAGCCGGAAAAACCCACCTCTATTACACCGGATAATGATAAAGCTGACG P H P M S R K N P P L L H R I M I K L T L I Q - A G K T H L Y Y T G - - - S - R S S S N E P E K P T S I T P D N D K A D . . . . . . 9444 ATAAAATGGTCGAGTTCGTGGATGAATGGGGAGAGAAGTCGGAGCCCGAACCCGGACCGG I K W S S S W M N G E R S R S P N P D R - N G R V R G - M G R E V G A R T R T G D K M V E F V D E W G E K S E P E P G P . . . . . . 9384 TTACGAAGTTAGCGGATTCGGATCCTCCGGAGTATGATGATGAGTGGGGTAATGGAAGTC L R S - R I R I L R S M M M S G V M E V Y E V S G F G S S G V - - - V G - W K S V T K L A D S D P P E Y D D E W G N G S . . . . . . 9324 CCGGAGTTGACGTGAGTGGTGAAGAGGACGAGAAGCTTCTAGAGCTGAAAAGGTGTTTGG P E L T - V V K R T R S F - S - K G V W R S - R E W - R G R E A S R A E K V F G P G V D V S G E E D E K L L E L K R C L . . . . . . 9264 TGGATACAGTTTATGGGACGGATTTCGGATTTCGGGCTTCATCAGAGATTCGGGCCGAGG W I Q F M G R I S D F G L H Q R F G P R G Y S L W D G F R I S G F I R D S G R G V D T V Y G T D F G F R A S S E I R A E . . . . . . 9204 CATTGGAGTTCGTTTGTCAGTTGGAGGCAGCCAATCCTTCTCCAGCACCAACTGAGTCTC H W S S F V S W R Q P I L L Q H Q L S L I G V R L S V G G S Q S F S S T N - V S A L E F V C Q L E A A N P S P A P T E S . . . . : . . 9144 CTGAGTTGCTTGATGGGAACTGGATTTTAGT : GTTCACTGCATTTTCCGAGTTGTTACCTC L S C L M G T G F - : C S L H F P S C Y L - V A - W E L D F S : V H C I F R V V T S P E L L D G N W I L V : F T A F S E L L P . . . . . . 7492 TTCTTGCTGTGGGTAACATTCCTCTGTTGAAGGTAGAAAAGATTAGCCAAGACGTAAATA F L L W V T F L C - R - K R L A K T - I S C C G - H S S V E G R K D - P R R K Y L L A V G N I P L L K V E K I S Q D V N . . . . . . 7432 CAAACAGCTCGACTATAGAGAATGCGACTACATTATCAAGCCCTGTAGCCACCTTGTCCT Q T A R L - R M R L H Y Q A L - P P C P K Q L D Y R E C D Y I I K P C S H L V L T N S S T I E N A T T L S S P V A T L S . . . . . : . 7372 TTAGTGCTACTGCCACTTTTGAAGTTCGAAGCCCCTCTAGAATACAG : GTTGAATTCAAGG L V L L P L L K F E A P L E Y R : L N S R - C Y C H F - S S K P L - N T : G - I Q G F S A T A T F E V R S P S R I Q : V E F K . . . . . . 7099 AAGGGAATTTTAAACCTCCAGAAATAAAATCGAACATAAATCTGCCGGAAACTGTGGATT K G I L N L Q K - N R T - I C R K L W I R E F - T S R N K I E H K S A G N C G F E G N F K P P E I K S N I N L P E T V D . . . . . . 7039 TGTTTGGGCAAAAGATAAGTCTCTCTCCTGTACAGCAATCTCTAGGTCCTCTGGAAAACG C L G K R - V S L L Y S N L - V L W K T V W A K D K S L S C T A I S R S S G K R L F G Q K I S L S P V Q Q S L G P L E N . . . . . . 6979 CTGTGGCAGGCATAGCACGAACTATTTCTGGTCAGCCTCCTCTCAAGATCCCAATTCCAG L W Q A - H E L F L V S L L S R S Q F Q C G R H S T N Y F W S A S S Q D P N S R A V A G I A R T I S G Q P P L K I P I P . . . . . . 6919 GTGGAAGGACAAAATCCTGGCTTCTCACAACCTACCTTGATAAGGATATGCGGATCTCCA V E G Q N P G F S Q P T L I R I C G S P W K D K I L A S H N L P - - G Y A D L Q G G R T K S W L L T T Y L D K D M R I S . . . . . . 6859 GAGGCGATGGTGGGCTTTTTGTGCTTGTTAAGGAAGGGAGTTCTCTTCTATATTAGTAAG E A M V G F L C L L R K G V L F Y I S K R R W W A F C A C - G R E F S S I L V R R G D G G L F V L V K E G S S L L Y - - . . . . . . 6799 GTATCCATTATCCTATATTGTGATTTACAAATGTCTTAGGAACTGCAATGGTATGTACTG V S I I L Y C D L Q M S - E L Q W Y V L Y P L S Y I V I Y K C L R N C N G M Y C G I H Y P I L - F T N V L G T A M V C T . . . . . . 6739 CTACATCGATTTATCGCGGGATGTAGAGTTTAAAACTCCTTAGCTGTAAGGTGGGACACT L H R F I A G C R V - N S L A V R W D T Y I D L S R D V E F K T P - L - G G T L A T S I Y R G M - S L K L L S C K V G H . . . . . . 6679 CTTTTAGGACTCAAGTACTTGCACTGAATTATCTCAGGATCAAGCTGTGAGATTAGTCCT L L G L K Y L H - I I S G S S C E I S P F - D S S T C T E L S Q D Q A V R L V L S F R T Q V L A L N Y L R I K L - D - S . . . . . . 6619 AGTAAGAAGTGTGCTGAAATAAAATGTGATATAGCTTTGCATTTTCCTATGTAGTAAGAT S K K C A E I K C D I A L H F P M - - D V R S V L K - N V I - L C I F L C S K I - - E V C - N K M - Y S F A F S Y V V R . . . . . . 6559 AACGATGTTTCAGTAATTTGGAGGTCAATCATCTGTAATTTCAGCTTATCTGGAAAGAAA N D V S V I W R S I I C N F S L S G K K T M F Q - F G G Q S S V I S A Y L E R K - R C F S N L E V N H L - F Q L I W K E . . . 6499 ATAACTTAACAATTACGTTTAATCTA I T - Q L R L I - L N N Y V - S N N L T I T F N L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-3_AGS-1_PPS_1 (9649 9114,7521 7326,7112 6804) (frame '0'; 1038 bp, 346 residues) 1 LNMSTLYNPL IFTIKNPKGS LKPHTSLPSS VPTFRLRKFQ NFSVQSSISS SNEPEKPTSI 61 TPDNDKADDK MVEFVDEWGE KSEPEPGPVT KLADSDPPEY DDEWGNGSPG VDVSGEEDEK 121 LLELKRCLVD TVYGTDFGFR ASSEIRAEAL EFVCQLEAAN PSPAPTESPE LLDGNWILVF 181 TAFSELLPLL AVGNIPLLKV EKISQDVNTN SSTIENATTL SSPVATLSFS ATATFEVRSP 241 SRIQVEFKEG NFKPPEIKSN INLPETVDLF GQKISLSPVQ QSLGPLENAV AGIARTISGQ 301 PPLKIPIPGG RTKSWLLTTY LDKDMRISRG DGGLFVLVKE GSSLLY- PGL 4 (- strand): 23832 10584 AGS-1 (23832 23359,19640 19543,18512 18426,18279 18182,16485 16428,15117 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10584) SCR (e 0.941 d 1.000 a 0.886,e 1.000 d 0.965 a 0.998,e 1.000 d 0.900 a 0.983,e 1.000 d 0.998 a 0.616,e 1.000 d 0.995 a 0.999,e 0.990 d 0.991 a 0.979,e 1.000 d 0.025 a 0.729,e 1.000 d 1.000 a 0.987,e 1.000 d 0.999 a 1.000,e 1.000 d 0.979 a 0.928,e 1.000 d 0.994 a 0.984,e 1.000 d 0.959 a 0.000,e 1.000) Exon 1 23832 23359 ( 474 n); score: 0.941 Intron 1 23358 19641 (3718 n); Pd: 1.000 Pa: 0.886 Exon 2 19640 19543 ( 98 n); score: 1.000 Intron 2 19542 18513 (1030 n); Pd: 0.965 Pa: 0.998 Exon 3 18512 18426 ( 87 n); score: 1.000 Intron 3 18425 18280 ( 146 n); Pd: 0.900 Pa: 0.983 Exon 4 18279 18182 ( 98 n); score: 1.000 Intron 4 18181 16486 (1696 n); Pd: 0.998 Pa: 0.616 Exon 5 16485 16428 ( 58 n); score: 1.000 Intron 5 16427 15118 (1310 n); Pd: 0.995 Pa: 0.999 Exon 6 15117 15016 ( 102 n); score: 0.990 Intron 6 15015 14928 ( 88 n); Pd: 0.991 Pa: 0.979 Exon 7 14927 14866 ( 62 n); score: 1.000 Intron 7 14865 14788 ( 78 n); Pd: 0.025 Pa: 0.729 Exon 8 14787 14677 ( 111 n); score: 1.000 Intron 8 14676 14048 ( 629 n); Pd: 1.000 Pa: 0.987 Exon 9 14047 13969 ( 79 n); score: 1.000 Intron 9 13968 12803 (1166 n); Pd: 0.999 Pa: 1.000 Exon 10 12802 12683 ( 120 n); score: 1.000 Intron 10 12682 12608 ( 75 n); Pd: 0.979 Pa: 0.928 Exon 11 12607 12497 ( 111 n); score: 1.000 Intron 11 12496 11241 (1256 n); Pd: 0.994 Pa: 0.984 Exon 12 11240 11062 ( 179 n); score: 1.000 Intron 12 11061 10959 ( 103 n); Pd: 0.959 Pa: 0.000 Exon 13 10958 10584 ( 375 n); score: 1.000 PGS (23832 23359,19640 19543,18512 18426,18279 18182,16485 16428,15117 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11062,10958 10584) SGN-U318148+ 3-phase translation of AGS-1 (-strand): . . . . . . 23832 AAAGCACGTGCTCGTTCCTGATAAAACACTCTCTCTCCCTCACAACACGCATATATTCAT K A R A R S - - N T L S P S Q H A Y I H K H V L V P D K T L S L P H N T H I F I S T C S F L I K H S L S L T T R I Y S . . . . . . 23772 TTCACTCCTCACTTTTTTTCTCGACCCTTTCTCTCTCTAAACCTCTCCATTCTGTGGTGG F T P H F F S R P F L S L N L S I L W W S L L T F F L D P F S L - T S P F C G G F H S S L F F S T L S L S K P L H S V V . . . . . . 23712 TGATGTTGATCCTCTCAGCGGCTTCGTCTTCTTCTTCTTCTTCTTCCTCCTTCATGCTTT - C - S S Q R L R L L L L L L P P S C F D V D P L S G F V F F F F F F L L H A F V M L I L S A A S S S S S S S S S F M L . . . . . . 23652 CTTCCGCTTCGTCTTCTTCTGCACGCATTCCGAGGCCGTTATCTTCATTTTCAACTTGTG L P L R L L L H A F R G R Y L H F Q L V F R F V F F C T H S E A V I F I F N L C S S A S S S S A R I P R P L S S F S T C . . . . . . 23592 TACCAGTAGTAGTAACAACTGTTTCTTCTGCAGCAACTTCGACGCTATTCCCGATTTCCT Y Q - - - Q L F L L Q Q L R R Y S R F P T S S S N N C F F C S N F D A I P D F L V P V V V T T V S S A A T S T L F P I S . . . . . . 23532 GTTTCGGTGTGAAATCGAGGACGGTTGGGATTCGGAAGCTACGGTGTGCCGTTTTTTGTG V S V - N R G R L G F G S Y G V P F F V F R C E I E D G W D S E A T V C R F L C C F G V K S R T V G I R K L R C A V F C . . . . . . 23472 CTTCGAAGGTACGTGGAATGGCAGAAATGATTGAAGATGCCATGACAGTTTCTGCTTCTG L R R Y V E W Q K - L K M P - Q F L L L F E G T W N G R N D - R C H D S F C F - A S K V R G M A E M I E D A M T V S A S . . . . . . : 23412 AGAGTCATGAGCTTCCGCAGTCCCGAGACTTCCTTGACGCACGCACTGGAGAAG : ACTTGC R V M S F R S P E T S L T H A L E K : T C E S - A S A V P R L P - R T H W R R : L A E S H E L P Q S R D F L D A R T G E : D L . . . . . . 19634 TATCTGCTGTTCGAAAAGCTGTGGAAGATGAAAAACTGCCACTGAATGTTGCTGAAGGAA Y L L F E K L W K M K N C H - M L L K E I C C S K S C G R - K T A T E C C - R N L S A V R K A V E D E K L P L N V A E G . . . . : . . 19574 TGGAGGAGTTGTATCAGAACTATCAGAATGCA : GTTTTACAAAGCGGCGTTCCCAAAGCAG W R S C I R T I R M Q : F Y K A A F P K Q G G V V S E L S E C : S F T K R R S Q S R M E E L Y Q N Y Q N A : V L Q S G V P K A . . . . . . : 18484 ATGAGGCCATTTTGTATAACATGGCTCTTGTATTCGACCGTGTTTTTGTGGATGTGAAG : G M R P F C I T W L L Y S T V F L W M - R : - G H F V - H G S C I R P C F C G C E : G D E A I L Y N M A L V F D R V F V D V K : . . . . . . 18278 ATCCTTTTGAATTCTCGCCGTATCATAAGGCCATTCGTGAACCTTTTGACTATTACAAGT I L L N S R R I I R P F V N L L T I T S S F - I L A V S - G H S - T F - L L Q V D P F E F S P Y H K A I R E P F D Y Y K . . . . : . . 18218 TTGGTCAAAATTATATCCGCCAGCTAGTTGATTTCAG : GAGCTCTTATGTTGGGAATATGT L V K I I S A S - L I S : G A L M L G I C W S K L Y P P A S - F Q : E L L C W E Y V F G Q N Y I R Q L V D F R : S S Y V G N M . . . . : . . 16462 CAGTTTTCAGTGAAATGGCAGAGAAGCTTAAACAG : GGTGATAATGTTGTCTTGATGTCAA Q F S V K W Q R S L N R : V I M L S - C Q S F Q - N G R E A - T : G - - C C L D V K S V F S E M A E K L K Q : G D N V V L M S . . . . . . 15092 ATCATCAAAGTGAAGCCGATCCTGCGATTATTGCACTCTTGATTGAATCAAAGCTCCCAG I I K V K P I L R L L H S - L N Q S S Q S S K - S R S C D Y C T L D - I K A P R N H Q S E A D P A I I A L L I E S K L P . . : . . . . 15032 ATATTGCTGAGAACATT : ATATATGTTGCTGGAGATAGAGTTATTACTGATCCTCTTTGCA I L L R T L : Y M L L E I E L L L I L F A Y C - E H : Y I C C W R - S Y Y - S S L Q D I A E N I : I Y V A G D R V I T D P L C . . : . . . . 14884 AGCCATTCAGCATGGGAAG : GAATCTCCTGTGTGTTTATTCGAAAAAACATATGAATGATG S H S A W E : G I S C V F I R K N I - M M A I Q H G K : E S P V C L F E K T Y E - - K P F S M G R : N L L C V Y S K K H M N D . . . . . . 14746 ACCCCGAACTTGCTGAGATGAAAAAGAGAGCAAACACAAGAAGCTTGAAGGAGATGGCTT T P N L L R - K R E Q T Q E A - R R W L P R T C - D E K E S K H K K L E G D G F D P E L A E M K K R A N T R S L K E M A . : . . . . . 14686 TGCTATTGAG : GGGTGGATCAAAAATAATATGGATTGCTCCTAGTGGTGGAAGAGATAGGC C Y - : G V D Q K - Y G L L L V V E E I G A I E : G W I K N N M D C S - W W K R - A L L L R : G G S K I I W I A P S G G R D R . . . : . . . 13997 CAGACCCTGTTACAAAAGAATGGTATCCA : GCACCATTTGATGCTTCCGCGACAGACAACA Q T L L Q K N G I Q : H H L M L P R Q T T R P C Y K R M V S : S T I - C F R D R Q H P D P V T K E W Y P : A P F D A S A T D N . . . . . . 12771 TGAGGAGGCTTGTACAACATGCTGGTGTCCCTGGTCACATTTATCCTCTAGCAATATTGT - G G L Y N M L V S L V T F I L - Q Y C E E A C T T C W C P W S H L S S S N I V M R R L V Q H A G V P G H I Y P L A I L . . . : . . . 12711 GCCATGATATTATGCCCCCTCCCGCCCAG : GTTGAGAAAAATATCGGAGAGAAAAGAGTTG A M I L C P L P P R : L R K I S E R K E L P - Y Y A P S R P : G - E K Y R R E K S C C H D I M P P P A Q : V E K N I G E K R V . . . . . . 12576 TATCTTTTCATGGAGCTGGCATATCTGTGGCACCCAAAATTGATTTTCATGAGGTTGCTG Y L F M E L A Y L W H P K L I F M R L L I F S W S W H I C G T Q N - F S - G C W V S F H G A G I S V A P K I D F H E V A . . : . . . . 12516 GTGCTTTGGAGGACCCTGAG : GCTAAGATGGTATATACAAAGGCAATTTATGATTCTGTAA V L W R T L R : L R W Y I Q R Q F M I L - C F G G P - : G - D G I Y K G N L - F C K G A L E D P E : A K M V Y T K A I Y D S V . . . . . . 11200 GCCAGCAGTATAATGTGCTAAATTCTGCTATACATGGCAAACAAGGACTGGAGGCTTCAA A S S I M C - I L L Y M A N K D W R L Q P A V - C A K F C Y T W Q T R T G G F N S Q Q Y N V L N S A I H G K Q G L E A S . . . . . . 11140 TACCTAGTGTTTCATTGTCACAACCATGGCAGTAGCTTCTCTTCCAACTTTATTTTTCAT Y L V F H C H N H G S S F S S N F I F H T - C F I V T T M A V A S L P T L F F I I P S V S L S Q P W Q - L L F Q L Y F S . . : . . . . 11080 ACCTTGTTGCTGTAGTCAG : TTTTGCAGATGTTTGTTTGGCAGTTACTATCAAATCACAAG T L L L - S : V L Q M F V W Q L L S N H K P C C C S Q : F C R C L F G S Y Y Q I T R Y L V A V V S : F A D V C L A V T I K S Q . . . . . . 10917 GATTACACTCACAATCTTTCCACATACCACGCTTGCATGTGGTTAGTCTCTGCGGAAAGT D Y T H N L S T Y H A C M W L V S A E S I T L T I F P H T T L A C G - S L R K V G L H S Q S F H I P R L H V V S L C G K . . . . . . 10857 TGATACAAACAAAGTAATTCTTGAAGTTACAGCAAACATAATCTGAAGGATTTTTTTTTG - Y K Q S N S - S Y S K H N L K D F F L D T N K V I L E V T A N I I - R I F F W L I Q T K - F L K L Q Q T - S E G F F F . . . . . . 10797 GCAGGGTTAGATGATTCTTTTGACACGAATGTACAGTTGCTTTACATTGTATTTGTATCA A G L D D S F D T N V Q L L Y I V F V S Q G - M I L L T R M Y S C F T L Y L Y Q G R V R - F F - H E C T V A L H C I C I . . . . . . 10737 AATGTTAGATTCAAATTTGTTAGTAATGATAGCTTTCAAGTACTGTTATGACTTTCTAAG N V R F K F V S N D S F Q V L L - L S K M L D S N L L V M I A F K Y C Y D F L R K C - I Q I C - - - - L S S T V M T F - . . . . . . 10677 GTTTAGTGTTAGTAGCTATTCTAGATTGCTGCTCATCTTACCTTTGAAGTGGTAATCCAA V - C - - L F - I A A H L T F E V V I Q F S V S S Y S R L L L I L P L K W - S N G L V L V A I L D C C S S Y L - S G N P . . . . 10617 TTTGTTGGGAAATATAATATTTGATGCTCTGCTA F V G K Y N I - C S A L L G N I I F D A L L I C W E I - Y L M L C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-4_AGS-1_PPS_1 (23830 23359,19640 19543,18512 18426,18279 18182,16485 16428,15117 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12497,11240 11106) (frame '0'; 1530 bp, 510 residues) 1 STCSFLIKHS LSLTTRIYSF HSSLFFSTLS LSKPLHSVVV MLILSAASSS SSSSSSFMLS 61 SASSSSARIP RPLSSFSTCV PVVVTTVSSA ATSTLFPISC FGVKSRTVGI RKLRCAVFCA 121 SKVRGMAEMI EDAMTVSASE SHELPQSRDF LDARTGEDLL SAVRKAVEDE KLPLNVAEGM 181 EELYQNYQNA VLQSGVPKAD EAILYNMALV FDRVFVDVKD PFEFSPYHKA IREPFDYYKF 241 GQNYIRQLVD FRSSYVGNMS VFSEMAEKLK QGDNVVLMSN HQSEADPAII ALLIESKLPD 301 IAENIIYVAG DRVITDPLCK PFSMGRNLLC VYSKKHMNDD PELAEMKKRA NTRSLKEMAL 361 LLRGGSKIIW IAPSGGRDRP DPVTKEWYPA PFDASATDNM RRLVQHAGVP GHIYPLAILC 421 HDIMPPPAQV EKNIGEKRVV SFHGAGISVA PKIDFHEVAG ALEDPEAKMV YTKAIYDSVS 481 QQYNVLNSAI HGKQGLEASI PSVSLSQPWQ - AGS-2 (15041 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12151) SCR (e 1.000 d 0.991 a 0.979,e 0.968 d 0.025 a 0.729,e 0.982 d 1.000 a 0.987,e 1.000 d 0.999 a 1.000,e 1.000 d 0.979 a 0.928,e 0.931) Exon 1 15041 15016 ( 26 n); score: 1.000 Intron 1 15015 14928 ( 88 n); Pd: 0.991 Pa: 0.979 Exon 2 14927 14866 ( 62 n); score: 0.968 Intron 2 14865 14788 ( 78 n); Pd: 0.025 Pa: 0.729 Exon 3 14787 14677 ( 111 n); score: 0.982 Intron 3 14676 14048 ( 629 n); Pd: 1.000 Pa: 0.987 Exon 4 14047 13969 ( 79 n); score: 1.000 Intron 4 13968 12803 (1166 n); Pd: 0.999 Pa: 1.000 Exon 5 12802 12683 ( 120 n); score: 1.000 Intron 5 12682 12608 ( 75 n); Pd: 0.979 Pa: 0.928 Exon 6 12607 12151 ( 457 n); score: 0.931 PGS (15041 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12151) SGN-U336404- 3-phase translation of AGS-2 (-strand): . . . : . . . 15041 AGCTCCCAGATATTGCTGAGAACATT : ATATATGTTGCTGGAGATAGAGTTATTACTGATC S S Q I L L R T L : Y M L L E I E L L L I A P R Y C - E H : Y I C C W R - S Y Y - S L P D I A E N I : I Y V A G D R V I T D . . . : . . . 14893 CTCTTTGCAAGCCATTCAGCATGGGAAG : GAATCTCCTGTGTGTTTATTCGAAAAAACATA L F A S H S A W E : G I S C V F I R K N I S L Q A I Q H G K : E S P V C L F E K T Y P L C K P F S M G R : N L L C V Y S K K H . . . . . . 14755 TGAATGATGACCCCGAACTTGCTGAGATGAAAAAGAGAGCAAACACAAGAAGCTTGAAGG - M M T P N L L R - K R E Q T Q E A - R E - - P R T C - D E K E S K H K K L E G M N D D P E L A E M K K R A N T R S L K . . : . . . . 14695 AGATGGCTTTGCTATTGAG : GGGTGGATCAAAAATAATATGGATTGCTCCTAGTGGTGGAA R W L C Y - : G V D Q K - Y G L L L V V E D G F A I E : G W I K N N M D C S - W W K E M A L L L R : G G S K I I W I A P S G G . . . . : . . 14006 GAGATAGGCCAGACCCTGTTACAAAAGAATGGTATCCA : GCACCATTTGATGCTTCCGCGA E I G Q T L L Q K N G I Q : H H L M L P R R - A R P C Y K R M V S : S T I - C F R D R D R P D P V T K E W Y P : A P F D A S A . . . . . . 12780 CAGACAACATGAGGAGGCTTGTACAACATGCTGGTGTCCCTGGTCACATTTATCCTCTAG Q T T - G G L Y N M L V S L V T F I L - R Q H E E A C T T C W C P W S H L S S S T D N M R R L V Q H A G V P G H I Y P L . . . . : . . 12720 CAATATTGTGCCATGATATTATGCCCCCTCCCGCCCAG : GTTGAGAAAAATATCGGAGAGA Q Y C A M I L C P L P P R : L R K I S E R N I V P - Y Y A P S R P : G - E K Y R R E A I L C H D I M P P P A Q : V E K N I G E . . . . . . 12585 AAAGAGTTGTATCTTTTCATGGAGCTGGCATATCTGTGGCACCCAAAATTGATTTTCATG K E L Y L F M E L A Y L W H P K L I F M K S C I F S W S W H I C G T Q N - F S - K R V V S F H G A G I S V A P K I D F H . . . . . . 12525 AGGTTGCTGGTGCTTTGGAGGACCCTGAGGTTAGTTTTTATGGGAAGTCCACTTTGGTTT R L L V L W R T L R L V F M G S P L W F G C W C F G G P - G - F L W E V H F G L E V A G A L E D P E V S F Y G K S T L V . . . . . . 12465 AATACTTCAAATTATTGGAAGCTTTTCTTAAACTAAATTTGGCAGCCTAATGAGAGGTTT N T S N Y W K L F L N - I W Q P N E R F I L Q I I G S F S - T K F G S L M R G L - Y F K L L E A F L K L N L A A - - E V . . . . . . 12405 AGTGATATTTGTTGGTGAACCTTTTGGGGGGGGGGGTCATTCTATTTAATAGAGAATGAA S D I C W - T F W G G G S F Y L I E N E V I F V G E P F G G G G H S I - - R M K - - Y L L V N L L G G G V I L F N R E - . . . . . . 12345 GGAGGAGAAGGGAAGTTGGACCAAACTCTTTCTCTTTCCTATTTGAGACCCAAATGAACA G G E G K L D Q T L S L S Y L R P K - T E E K G S W T K L F L F P I - D P N E Q R R R R E V G P N S F S F L F E T Q M N . . . . . . 12285 GCTAGTTGACCTTTGCTAAGAGGGGCGCAGGTTCAGCAGAAATTTTGATTCCTGCAGTTG A S - P L L R G A Q V Q Q K F - F L Q L L V D L C - E G R R F S R N F D S C S - S - L T F A K R G A G S A E I L I P A V . . . . . . 12225 AGCTTTTTCTTGTTGGAAAAGTTAAGAAGTAAAGCTCCAAAGGAACTTTCAATATGCAAA S F F L L E K L R S K A P K E L S I C K A F S C W K S - E V K L Q R N F Q Y A N E L F L V G K V K K - S S K G T F N M Q . . 12165 TAAAACATTCATCTA - N I H L K T F I I K H S S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-4_AGS-2_PPS_1 (15039 15016,14927 14866,14787 14677,14047 13969,12802 12683,12607 12464) (frame '0'; 537 bp, 179 residues) 1 LPDIAENIIY VAGDRVITDP LCKPFSMGRN LLCVYSKKHM NDDPELAEMK KRANTRSLKE 61 MALLLRGGSK IIWIAPSGGR DRPDPVTKEW YPAPFDASAT DNMRRLVQHA GVPGHIYPLA 121 ILCHDIMPPP AQVEKNIGEK RVVSFHGAGI SVAPKIDFHE VAGALEDPEV SFYGKSTLV- AGS-3 (13345 12931) SCR (e 1.000) Exon 1 13345 12931 ( 415 n); score: 1.000 PGS (13345 12931) SGN-U333370+ 3-phase translation of AGS-3 (-strand): . . . . . . 13345 GAATGTGATTGGCATTATTTGCCTGAACTTTAAATGAGAGTTAACTGTTCGTATCCAATT E C D W H Y L P E L - M R V N C S Y P I N V I G I I C L N F K - E L T V R I Q L M - L A L F A - T L N E S - L F V S N . . . . . . 13285 GGGATTTACATGGATACATGCTATGGTTCACTGCTTCTTCCTATTCTGTATGTTCAGCAA G I Y M D T C Y G S L L L P I L Y V Q Q G F T W I H A M V H C F F L F C M F S N W D L H G Y M L W F T A S S Y S V C S A . . . . . . 13225 TACACTTCTCCATTACACTTGCCTTGTGACAGTTCTAGGGTGATGTTGATAAGCGTGATA Y T S P L H L P C D S S R V M L I S V I T L L H Y T C L V T V L G - C - - A - - I H F S I T L A L - Q F - G D V D K R D . . . . . . 13165 ATATCTCTTCTTCTCCAGCATAGTTCTATGTATATGATGGGCAGTTAGTTTCAAAAGTTT I S L L L Q H S S M Y M M G S - F Q K F Y L F F S S I V L C I - W A V S F K S F N I S S S P A - F Y V Y D G Q L V S K V . . . . . . 13105 TGGTATTTATGCTTCGTCATGATGCTTAATTAAGAGCCATTTTTTTAACATTTAATTTTT W Y L C F V M M L N - E P F F - H L I F G I Y A S S - C L I K S H F F N I - F F L V F M L R H D A - L R A I F L T F N F . . . . . . 13045 TTTTCCAAAAGAGCCAGATCCATATAGGTAATATCAGTTAGTTAAGACGCAGCTAATTAT F S K R A R S I - V I S V S - D A A N Y F P K E P D P Y R - Y Q L V K T Q L I I F F Q K S Q I H I G N I S - L R R S - L . . . . . . 12985 TTTTCAATGAACAGGTGTTTGGTTTAGATAAACCATAATTGCCTTTAAAAGGCCA F S M N R C L V - I N H N C L - K A F Q - T G V W F R - T I I A F K R P F F N E Q V F G L D K P - L P L K G Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-4_AGS-3_PPS_1 (13312 13118) (frame '1'; 192 bp, 64 residues) 1 MRVNCSYPIG IYMDTCYGSL LLPILYVQQY TSPLHLPCDS SRVMLISVII SLLLQHSSMY 61 MMGS- 3-phase translation of AGS-3 (+strand): . . . . . . 12931 TGGCCTTTTAAAGGCAATTATGGTTTATCTAAACCAAACACCTGTTCATTGAAAAATAAT W P F K G N Y G L S K P N T C S L K N N G L L K A I M V Y L N Q T P V H - K I I A F - R Q L W F I - T K H L F I E K - . . . . . . 12991 TAGCTGCGTCTTAACTAACTGATATTACCTATATGGATCTGGCTCTTTTGGAAAAAAAAA - L R L N - L I L P I W I W L F W K K K S C V L T N - Y Y L Y G S G S F G K K N L A A S - L T D I T Y M D L A L L E K K . . . . . . 13051 TTAAATGTTAAAAAAATGGCTCTTAATTAAGCATCATGACGAAGCATAAATACCAAAACT L N V K K M A L N - A S - R S I N T K T - M L K K W L L I K H H D E A - I P K L I K C - K N G S - L S I M T K H K Y Q N . . . . . . 13111 TTTGAAACTAACTGCCCATCATATACATAGAACTATGCTGGAGAAGAAGAGATATTATCA F E T N C P S Y T - N Y A G E E E I L S L K L T A H H I H R T M L E K K R Y Y H F - N - L P I I Y I E L C W R R R D I I . . . . . . 13171 CGCTTATCAACATCACCCTAGAACTGTCACAAGGCAAGTGTAATGGAGAAGTGTATTGCT R L S T S P - N C H K A S V M E K C I A A Y Q H H P R T V T R Q V - W R S V L L T L I N I T L E L S Q G K C N G E V Y C . . . . . . 13231 GAACATACAGAATAGGAAGAAGCAGTGAACCATAGCATGTATCCATGTAAATCCCAATTG E H T E - E E A V N H S M Y P C K S Q L N I Q N R K K Q - T I A C I H V N P N W - T Y R I G R S S E P - H V S M - I P I . . . . . . 13291 GATACGAACAGTTAACTCTCATTTAAAGTTCAGGCAAATAATGCCAATCACATTC D T N S - L S F K V Q A N N A N H I I R T V N S H L K F R Q I M P I T F G Y E Q L T L I - S S G K - C Q S H Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 24742 24477 AGS-1 (24742 24477) SCR (e 0.763) Exon 1 24742 24477 ( 266 n); score: 0.763 PGS (24742 24477) SGN-U328267- 3-phase translation of AGS-1 (-strand): . . . . . . 24742 TCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCT S Q P M P E I S E T H L Y Y T K V L L P L N L C P K S Q R H T Y T I L R S Y Y L S T Y A R N L R D T L I L Y - G P I T . . . . . . 24682 CCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCTTACGTGGCACTATCTTAT P E L I L L I I F Y P F L A Y V A L S Y L N L F Y - - F F T P F - L T W H Y L M S - T Y F I N N F L P L F S L R G T I L . . . . . . 24622 GGACCCAACGATGATTGACTTTTTTTTCGAACTAGTGCCACATATGCTAAAAAGGGGTAG G P N D D - L F F R T S A T Y A K K G - D P T M I D F F F E L V P H M L K R G R W T Q R - L T F F S N - C H I C - K G V . . . . . . 24562 AAAATTACATATGAAATAAGTTTAGGGGTAATAGGACATTAGTATAGTATAAGTGTTTCT K I T Y E I S L G V I G H - Y S I S V S K L H M K - V - G - - D I S I V - V F L E N Y I - N K F R G N R T L V - Y K C F . . . 24502 ATGAGATTTCAGGCATAAGTTGAGGG M R F Q A - V E - D F R H K L R Y E I S G I S - G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 24477 CCCTCAACTTATGCCTGAAATCTCATAGAAACACTTATACTATACTAATGTCCTATTACC P S T Y A - N L I E T L I L Y - C P I T P Q L M P E I S - K H L Y Y T N V L L P L N L C L K S H R N T Y T I L M S Y Y . . . . . . 24537 CCTAAACTTATTTCATATGTAATTTTCTACCCCTTTTTAGCATATGTGGCACTAGTTCGA P K L I S Y V I F Y P F L A Y V A L V R L N L F H M - F S T P F - H M W H - F E P - T Y F I C N F L P L F S I C G T S S . . . . . . 24597 AAAAAAAGTCAATCATCGTTGGGTCCATAAGATAGTGCCACGTAAGCTAAAAAGGGGTAA K K S Q S S L G P - D S A T - A K K G - K K V N H R W V H K I V P R K L K R G K K K K S I I V G S I R - C H V S - K G V . . . . . . 24657 AAAATTATTAATAAAATAAGTTCAGGAGGTAATAGGACCTTAGTATAGTATAAGTGTGTC K I I N K I S S G G N R T L V - Y K C V K L L I K - V Q E V I G P - Y S I S V S K N Y - - N K F R R - - D L S I V - V C . . . 24717 TCTGAGATTTCGGGCATAGGTTGAGA S E I S G I G - L R F R A - V E L - D F G H R L R Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (- strand): 31342 27541 AGS-1 (31342 31211,31086 31039,28327 28240,28156 28113,27847 27541) SCR (e 1.000 d 0.968 a 0.918,e 1.000 d 0.999 a 0.926,e 1.000 d 0.915 a 0.983,e 1.000 d 0.999 a 0.992,e 0.967) Exon 1 31342 31211 ( 132 n); score: 1.000 Intron 1 31210 31087 ( 124 n); Pd: 0.968 Pa: 0.918 Exon 2 31086 31039 ( 48 n); score: 1.000 Intron 2 31038 28328 (2711 n); Pd: 0.999 Pa: 0.926 Exon 3 28327 28240 ( 88 n); score: 1.000 Intron 3 28239 28157 ( 83 n); Pd: 0.915 Pa: 0.983 Exon 4 28156 28113 ( 44 n); score: 1.000 Intron 4 28112 27848 ( 265 n); Pd: 0.999 Pa: 0.992 Exon 5 27847 27541 ( 307 n); score: 0.967 PGS (31342 31211,31086 31039,28327 28240,28156 28113,27847 27541) SGN-U318547+ 3-phase translation of AGS-1 (-strand): . . . . . . 31342 TCCATCGAAATTGAGGTCACACAAGAGAACTGAAGAGTGACAAAAATGGCAAAGTCGTCG S I E I E V T Q E N - R V T K M A K S S P S K L R S H K R T E E - Q K W Q S R R H R N - G H T R E L K S D K N G K V V . . . . . . 31282 GCGACCAAAGACGCCCAAGCTCTTTTCCATTCTCTCCGTTCTGCTTATGCCGCAACTCCG A T K D A Q A L F H S L R S A Y A A T P R P K T P K L F S I L S V L L M P Q L R G D Q R R P S S F P F S P F C L C R N S . . : . . . . : 31222 ACGAATCTCAAG : ATCATTGATCTATATGTCATCTTTGCGATCTCTACTGCCTTAATTCAG : T N L K : I I D L Y V I F A I S T A L I Q : R I S R : S L I Y M S S L R S L L P - F R : D E S Q : D H - S I C H L C D L Y C L N S : . . . . . . 28327 GTGGTATACATGGCTATTGTTGGATCATTTCCATTCAACTCTTTTCTCTCTGGGGTGCTT V V Y M A I V G S F P F N S F L S G V L W Y T W L L L D H F H S T L F S L G C F G G I H G Y C W I I S I Q L F S L W G A . . . : . . . 28267 TCTTGTATTGGCACAGCAGTCCTTGCTG : TTTGTCTTCGGATCCAAGTAAACAAAGAAAAC S C I G T A V L A : V C L R I Q V N K E N L V L A Q Q S L L : F V F G S K - T K K T F L Y W H S S P C C : L S S D P S K Q R K . . : . . . . 28124 AAGGAATTCAAG : GATTTGCCTCCGGAACGTGCTTTTGCAGATTTTGTTCTCTGCAATTTA K E F K : D L P P E R A F A D F V L C N L R N S R : I C L R N V L L Q I L F S A I - Q G I Q : G F A S G T C F C R F C S L Q F . . . . . . 27799 GTGCTCCATTTGGTGATCATGAACTTTCTTGGCTAGATTGAGGCACCAAATCTTGAAAAT V L H L V I M N F L G - I E A P N L E N C S I W - S - T F L A R L R H Q I L K M S A P F G D H E L S W L D - G T K S - K . . . . . . 27739 GTTGCTCTTACAAATCTTGGTGATTTTTATGTAAGAATAATATAGAGTCAATCGTAAAGG V A L T N L G D F Y V R I I - S Q S - R L L L Q I L V I F M - E - Y R V N R K G C C S Y K S W - F L C K N N I E S I V K . . . . . . 27679 ATTTTGTTAGGCTTTCGGAAATATTAAGTTTCTCATGCATGAAACTATTTTACATTTATG I L L G F R K Y - V S H A - N Y F T F M F C - A F G N I K F L M H E T I L H L - D F V R L S E I L S F S C M K L F Y I Y . . . . . . 27619 AATCTTATATGAGTATTAGTAAGTAGACAATCTTTGGCCATTCTGAGTTCTATAGCCCAA N L I - V L V S R Q S L A I L S S I A Q I L Y E Y - - V D N L W P F - V L - P K E S Y M S I S K - T I F G H S E F Y S P . . 27559 AAAGGAGCCAAACTTTTTC K G A K L F K E P N F F K R S Q T F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-6_AGS-1_PPS_1 (31309 31211,31086 31039,28327 28240,28156 28113,27847 27764) (frame '1'; 360 bp, 120 residues) 1 RVTKMAKSSA TKDAQALFHS LRSAYAATPT NLKIIDLYVI FAISTALIQV VYMAIVGSFP 61 FNSFLSGVLS CIGTAVLAVC LRIQVNKENK EFKDLPPERA FADFVLCNLV LHLVIMNFLG 121 - PGL 7 (- strand): 35379 33596 AGS-1 (35379 35140,34038 33978,33619 33596) SCR (e 0.715 d 0.000 a 0.000,e 0.631 d 0.900 a 0.000,e 0.792) Exon 1 35379 35140 ( 240 n); score: 0.715 Intron 1 35139 34039 (1101 n); Pd: 0.000 Pa: 0.000 Exon 2 34038 33978 ( 61 n); score: 0.631 Intron 2 33977 33620 ( 358 n); Pd: 0.900 Pa: 0.000 Exon 3 33619 33596 ( 24 n); score: 0.792 PGS (35379 35140,34038 33978,33619 33596) SGN-U329548+ 3-phase translation of AGS-1 (-strand): . . . . . . 35379 AAAATTAAAATTCAATAAAAAATTATAAAATCATTAAAGAATAATGACTCAATATCATAT K I K I Q - K I I K S L K N N D S I S Y K L K F N K K L - N H - R I M T Q Y H I N - N S I K N Y K I I K E - - L N I I . . . . . . 35319 ACTTCCTTCGTTCAGAATTGTTTGTCATGTTGCGCTTATTAAAAGTCAATTTGACTAATT T S F V Q N C L S C C A Y - K S I - L I L P S F R I V C H V A L I K S Q F D - F Y F L R S E L F V M L R L L K V N L T N . . . . . . 35259 TTTAAAGGTAAATTAGATAACATTAATTCGATATTTTAAACAAAAAAAAAATTCTAAAAC F K G K L D N I N S I F - T K K K F - N L K V N - I T L I R Y F K Q K K N S K T F - R - I R - H - F D I L N K K K I L K . . . . . . : 35199 TATATGAAAAGTACTATAAATTAATTTTTTTTACATATTAATATGATAAAAAAATACATC : Y M K S T I N - F F L H I N M I K K Y I : I - K V L - I N F F Y I L I - - K N T S : L Y E K Y Y K L I F F T Y - Y D K K I H : . . . . . . 34038 TTATATTTGTAATTTTTTAAAAAAATATATAAATATATGTAGAGAATATTGAATTTCGTA L Y L - F F K K I Y K Y M - R I L N F V Y I C N F L K K Y I N I C R E Y - I S - L I F V I F - K N I - I Y V E N I E F R . : . . 33978 A : CAATATAGTTATTTCAACAATTTA : T I - L F Q Q F : Q Y S Y F N N L N : N I V I S T I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (+ strand): 36671 41597 AGS-1 (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40804,41018 41597) SCR (e 1.000 d 0.995 a 0.862,e 1.000 d 0.901 a 1.000,e 1.000 d 0.917 a 0.957,e 1.000 d 0.879 a 0.996,e 1.000 d 0.994 a 0.996,e 1.000 d 0.973 a 1.000,e 0.983) Exon 1 36671 36892 ( 222 n); score: 1.000 Intron 1 36893 38346 (1454 n); Pd: 0.995 Pa: 0.862 Exon 2 38347 38446 ( 100 n); score: 1.000 Intron 2 38447 38562 ( 116 n); Pd: 0.901 Pa: 1.000 Exon 3 38563 38651 ( 89 n); score: 1.000 Intron 3 38652 38834 ( 183 n); Pd: 0.917 Pa: 0.957 Exon 4 38835 38890 ( 56 n); score: 1.000 Intron 4 38891 39810 ( 920 n); Pd: 0.879 Pa: 0.996 Exon 5 39811 39957 ( 147 n); score: 1.000 Intron 5 39958 40681 ( 724 n); Pd: 0.994 Pa: 0.996 Exon 6 40682 40804 ( 123 n); score: 1.000 Intron 6 40805 41017 ( 213 n); Pd: 0.973 Pa: 1.000 Exon 7 41018 41597 ( 580 n); score: 0.983 PGS (36671 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40804,41018 41597) SGN-U316185+ PGS (39850 39957,40682 40804,41018 41428) SGN-U335524- 3-phase translation of AGS-1 (+strand): . . . . . . 36671 CAAAGTTCAACTATTGCCTTTGCTATTCATTTTCTTCCATTGATTAGATAACTTCTCAAT Q S S T I A F A I H F L P L I R - L L N K V Q L L P L L F I F F H - L D N F S I K F N Y C L C Y S F S S I D - I T S Q . . . . . . 36731 CTCATCTCTGTGAACTGTGGAAGAGAAAACTATGGCGACTTTCTCAAACATCGGTGCCAT L I S V N C G R E N Y G D F L K H R C H S S L - T V E E K T M A T F S N I G A I S H L C E L W K R K L W R L S Q T S V P . . . . . . 36791 TTGCAAAGTTACATCAGCTCCTTCTCTTAGCAGCACTAGTAGTAGAGCTCTCTTTCCTAC L Q S Y I S S F S - Q H - - - S S L S Y C K V T S A P S L S S T S S R A L F P T F A K L H Q L L L L A A L V V E L S F L . . . . . : . 36851 GACTTTGCGCAGTTACAGTCATTCACAAGTCTCTCGCTCTCG : TTCTTGCCGACTTTGTAT D F A Q L Q S F T S L S L S : F L P T L Y T L R S Y S H S Q V S R S R : S C R L C I R L C A V T V I H K S L A L : V L A D F V . . . . . . 38365 TAAAAGCAGTTATGCCGAAGCTGTCAGAGGGGATCCTAACTCGGATGCAATTGATGTTGT - K Q L C R S C Q R G S - L G C N - C C K S S Y A E A V R G D P N S D A I D V V L K A V M P K L S E G I L T R M Q L M L . . . : . . . 38425 AGCAGATGTTAAGACTGAACGA : ATTGTAGTTATAGGAGGCAGCGGCTTTGTTGGCTCTGC S R C - D - T : N C S Y R R Q R L C W L C A D V K T E R : I V V I G G S G F V G S A - Q M L R L N E : L - L - E A A A L L A L . . . . . . : 38601 AATATGCAAGGCCGCAGTGTCAGAGGGTATAGAGGTCATAAGTCTGAGCAG : ATCAGGGCG N M Q G R S V R G Y R G H K S E Q : I R A I C K A A V S E G I E V I S L S R : S G R Q Y A R P Q C Q R V - R S - V - A : D Q G . . . . . : . 38844 TCCCTCTAAATCAGACTCATGGGTAGATCAAGTCACTTGGATAACAG : GAGATGTTTTCTA S L - I R L M G R S S H L D N R : R C F L P S K S D S W V D Q V T W I T : G D V F Y V P L N Q T H G - I K S L G - Q : E M F S . . . . . . 39824 TGCAAACTGGGATGAAGTACTTATTGGGGCTACAGCAGTTGTTTCAACTTTAGGAGGTTT C K L G - S T Y W G Y S S C F N F R R F A N W D E V L I G A T A V V S T L G G F M Q T G M K Y L L G L Q Q L F Q L - E V . . . . . . 39884 TGGTTCTGATGAACAAATGCTTAGGATCAATGGTGAAGCTAATGTTGTGGCTGTCAATGC W F - - T N A - D Q W - S - C C G C Q C G S D E Q M L R I N G E A N V V A V N A L V L M N K C L G S M V K L M L W L S M . . : . . . . 39944 TGCTAAAGAATATG : GGACCCCTAAGTTCATATTGATTTCTGTGCATGATTACAATCTACC C - R I W : D P - V H I D F C A - L Q S T A K E Y : G T P K F I L I S V H D Y N L P L L K N M : G P L S S Y - F L C M I T I Y . . . . . . 40728 ATCATTCCTCCAATCAAGTTACTTCATAGGGAAAAGAAAAGCAGAATCAGAAGTTCTTTC I I P P I K L L H R E K K S R I R S S F S F L Q S S Y F I G K R K A E S E V L S H H S S N Q V T S - G K E K Q N Q K F F . . : . . . . 40788 CAAATTCCCTAGCTCAG : GTGTGGTTCTTAGACCTGCCTTTATATATGGGAAGAGGAAGGT Q I P - L R : C G S - T C L Y I W E E E G K F P S S : G V V L R P A F I Y G K R K V P N S L A Q : V W F L D L P L Y M G R G R . . . . . . 41061 TGACGGCTTCGAGATCCCTCTAGATTTGATTGGAGAACCTCTTGAAAAGTTATTACGTGC - R L R D P S R F D W R T S - K V I T C D G F E I P L D L I G E P L E K L L R A L T A S R S L - I - L E N L L K S Y Y V . . . . . . 41121 AACAGAGAGCTTCACTAAACCATTGAACTCGTTGCCAGCATCCGATTTAATTCTTGCCCC N R E L H - T I E L V A S I R F N S C P T E S F T K P L N S L P A S D L I L A P Q Q R A S L N H - T R C Q H P I - F L P . . . . . . 41181 TCCTGTTAGCGTGGACGACGTTGCTTATGCAGTGATAAATGCTGTTAAGGATGACGACTG S C - R G R R C L C S D K C C - G - R L P V S V D D V A Y A V I N A V K D D D C L L L A W T T L L M Q - - M L L R M T T . . . . . . 41241 TTTTGGCATTTTTACCATCAACCAAATCAAAGAAGCAGCAGCAGGGGTTAAGGTGTAAGA F W H F Y H Q P N Q R S S S R G - G V R F G I F T I N Q I K E A A A G V K V - D V L A F L P S T K S K K Q Q Q G L R C K . . . . . . 41301 TAAGGTCCACATCAAAAAGAAAAATGACATACATCTTGTAACAAAATTATATATGTAGAA - G P H Q K E K - H T S C N K I I Y V E K V H I K K K N D I H L V T K L Y M - N I R S T S K R K M T Y I L - Q N Y I C R . . . . . . 41361 CATGTATCATGTCATACAAAACTCTTGCTTATGATATCCATAGTATAATGGACCTTTTGA H V S C H T K L L L M I S I V - W T F - M Y H V I Q N S C L - Y P - Y N G P F D T C I M S Y K T L A Y D I H S I M D L L . . . . . . 41421 TGCTAAAATAGCCTATTTTCATCCTGTATTTACTAGTAAGAAGAGCAAATCAATACTCCA C - N S L F S S C I Y - - E E Q I N T P A K I A Y F H P V F T S K K S K S I L H M L K - P I F I L Y L L V R R A N Q Y S . . . . . . 41481 TCTTGCAAAACACCATGTGTTGGAAGTCTTGGAGATTGAAATTATAGCAGTGAATTGAAC S C K T P C V G S L G D - N Y S S E L N L A K H H V L E V L E I E I I A V N - T I L Q N T M C W K S W R L K L - Q - I E . . . . . . 41541 CGCGCTTCGCGCGGACATAATTATTGTTAAAGTAGTTCTTTTAGAAGACTTAAGTAA R A S R G H N Y C - S S S F R R L K - A L R A D I I I V K V V L L E D L S P R F A R T - L L L K - F F - K T - V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-8_AGS-1_PPS_1 (36744 36892,38347 38446,38563 38651,38835 38890,39811 39957,40682 40804,41018 41298) (frame '2'; 942 bp, 314 residues) 1 TVEEKTMATF SNIGAICKVT SAPSLSSTSS RALFPTTLRS YSHSQVSRSR SCRLCIKSSY 61 AEAVRGDPNS DAIDVVADVK TERIVVIGGS GFVGSAICKA AVSEGIEVIS LSRSGRPSKS 121 DSWVDQVTWI TGDVFYANWD EVLIGATAVV STLGGFGSDE QMLRINGEAN VVAVNAAKEY 181 GTPKFILISV HDYNLPSFLQ SSYFIGKRKA ESEVLSKFPS SGVVLRPAFI YGKRKVDGFE 241 IPLDLIGEPL EKLLRATESF TKPLNSLPAS DLILAPPVSV DDVAYAVINA VKDDDCFGIF 301 TINQIKEAAA GVKV- PGL 9 (+ strand): 42869 43436 AGS-1 (42869 43436) SCR (e 0.873) Exon 1 42869 43436 ( 568 n); score: 0.873 PGS (42869 43436) SGN-U340471- 3-phase translation of AGS-1 (+strand): . . . . . . 42869 CTCGAGCATCCATTAAACTTTACCTTAAAATCTTGGAGCCACCGCTACTCTAATCAATAG L E H P L N F T L K S W S H R Y S N Q - S S I H - T L P - N L G A T A T L I N R R A S I K L Y L K I L E P P L L - S I . . . . . . 42929 ACATTTTCAATAGAGACTACTAACAGAAGCACTATGCGGAAACCTATATACTCCTAATCA T F S I E T T N R S T M R K P I Y S - S H F Q - R L L T E A L C G N L Y T P N Q D I F N R D Y - Q K H Y A E T Y I L L I . . . . . . 42989 ATTTGTTTCTATGCACTATGTCGATACAATAGGTAAATAAAGTTCAATAAAAGAGCTAGC I C F Y A L C R Y N R - I K F N K R A S F V S M H Y V D T I G K - S S I K E L A N L F L C T M S I Q - V N K V Q - K S - . . . . . . 43049 AAATACTAAAAAAAATAAAAAATTTCTGTCCAGTAAAATTTTTTCAGCTGTATTCAGGAA K Y - K K - K I S V Q - N F F S C I Q E N T K K N K K F L S S K I F S A V F R N Q I L K K I K N F C P V K F F Q L Y S G . . . . . . 43109 CTAAGCTAAACTTTCAGTTAAGTTTGAGTGAATTGAGTAACTTCAATCCAAACTTTATAT L S - T F S - V - V N - V T S I Q T L Y - A K L S V K F E - I E - L Q S K L Y M T K L N F Q L S L S E L S N F N P N F I . . . . . . 43169 GTATCTTAATAAATCTATCAACTCTACAAATTATTGATTAAATTAAAATCCAATAATATA V S - - I Y Q L Y K L L I K L K S N N I Y L N K S I N S T N Y - L N - N P I I - C I L I N L S T L Q I I D - I K I Q - Y . . . . . . 43229 AAAGAATCAAAATTTGAAACTCATAAGCTTGAAATTGACTATATAGACTCTCTTCGTCCA K E S K F E T H K L E I D Y I D S L R P K N Q N L K L I S L K L T I - T L F V H K R I K I - N S - A - N - L Y R L S S S . . . . . . 43289 CTATCAAAATTTGTCATGCTTGTCATTTTTAGAGTCAATTTATAAAAATTTTGACTAACA L S K F V M L V I F R V N L - K F - L T Y Q N L S C L S F L E S I Y K N F D - H T I K I C H A C H F - S Q F I K I L T N . . . . . . 43349 TTTTACAATATATTTTTTCATCATATTGCTATGCAAACAATTGCTATGTATAGTACTTTC F Y N I F F H H I A M Q T I A M Y S T F F T I Y F F I I L L C K Q L L C I V L S I L Q Y I F S S Y C Y A N N C Y V - Y F . . . 43409 CGTATAGTTTTTGAATATCTGAATTTTT R I V F E Y L N F V - F L N I - I F P Y S F - I S E F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 43436 AAAAATTCAGATATTCAAAAACTATACGGAAAGTACTATACATAGCAATTGTTTGCATAG K N S D I Q K L Y G K Y Y T - Q L F A - K I Q I F K N Y T E S T I H S N C L H S K F R Y S K T I R K V L Y I A I V C I . . . . . . 43376 CAATATGATGAAAAAATATATTGTAAAATGTTAGTCAAAATTTTTATAAATTGACTCTAA Q Y D E K I Y C K M L V K I F I N - L - N M M K K Y I V K C - S K F L - I D S K A I - - K N I L - N V S Q N F Y K L T L . . . . . . 43316 AAATGACAAGCATGACAAATTTTGATAGTGGACGAAGAGAGTCTATATAGTCAATTTCAA K - Q A - Q I L I V D E E S L Y S Q F Q N D K H D K F - - W T K R V Y I V N F K K M T S M T N F D S G R R E S I - S I S . . . . . . 43256 GCTTATGAGTTTCAAATTTTGATTCTTTTATATTATTGGATTTTAATTTAATCAATAATT A Y E F Q I L I L L Y Y W I L I - S I I L M S F K F - F F Y I I G F - F N Q - F S L - V S N F D S F I L L D F N L I N N . . . . . . 43196 TGTAGAGTTGATAGATTTATTAAGATACATATAAAGTTTGGATTGAAGTTACTCAATTCA C R V D R F I K I H I K F G L K L L N S V E L I D L L R Y I - S L D - S Y S I H L - S - - I Y - D T Y K V W I E V T Q F . . . . . . 43136 CTCAAACTTAACTGAAAGTTTAGCTTAGTTCCTGAATACAGCTGAAAAAATTTTACTGGA L K L N - K F S L V P E Y S - K N F T G S N L T E S L A - F L N T A E K I L L D T Q T - L K V - L S S - I Q L K K F Y W . . . . . . 43076 CAGAAATTTTTTATTTTTTTTAGTATTTGCTAGCTCTTTTATTGAACTTTATTTACCTAT Q K F F I F F S I C - L F Y - T L F T Y R N F L F F L V F A S S F I E L Y L P I T E I F Y F F - Y L L A L L L N F I Y L . . . . . . 43016 TGTATCGACATAGTGCATAGAAACAAATTGATTAGGAGTATATAGGTTTCCGCATAGTGC C I D I V H R N K L I R S I - V S A - C V S T - C I E T N - L G V Y R F P H S A L Y R H S A - K Q I D - E Y I G F R I V . . . . . . 42956 TTCTGTTAGTAGTCTCTATTGAAAATGTCTATTGATTAGAGTAGCGGTGGCTCCAAGATT F C - - S L L K M S I D - S S G G S K I S V S S L Y - K C L L I R V A V A P R F L L L V V S I E N V Y - L E - R W L Q D . . . 42896 TTAAGGTAAAGTTTAATGGATGCTCGAG L R - S L M D A R - G K V - W M L E F K V K F N G C S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 10 (- strand): 44806 44022 AGS-1 (44806 44022) SCR (e 0.894) Exon 1 44806 44022 ( 785 n); score: 0.894 PGS (44806 44022) SGN-U323457+ 3-phase translation of AGS-1 (-strand): . . . . . . 44806 GCAGAAGTCCCATCACATCATCCTCTTTGCGAGCAAAAACTCCATCTCCAGGTATACCTC A E V P S H H P L C E Q K L H L Q V Y L Q K S H H I I L F A S K N S I S R Y T S R S P I T S S S L R A K T P S P G I P . . . . . . 44746 AAAACTTATCCTATTTTTGTTTTCCTTTTTTCTGGTTGTAATTTCAACCTTTTCTTCCTT K T Y P I F V F L F S G C N F N L F F L K L I L F L F S F F L V V I S T F S S F Q N L S Y F C F P F F W L - F Q P F L P . . . . . . 44686 CTATGCTACTGTAATTTGATTATGAATTATCTAGCATTGGAACAAAAATGATTTGCTAAT L C Y C N L I M N Y L A L E Q K - F A N Y A T V I - L - I I - H W N K N D L L I S M L L - F D Y E L S S I G T K M I C - . . . . . . 44626 ATTACTCTGATAAAATTATATTCTTTTTCTGGCAGAAGTTCACAATGTTTTGCCAAGTTC I T L I K L Y S F S G R S S Q C F A K F L L - - N Y I L F L A E V H N V L P S S Y Y S D K I I F F F W Q K F T M F C Q V . . . . . . 44566 TTTCTATTGGAAGTGTGTCAGTTTTTATGGAATATTCGCACTGAAGCCCAGTTATATATG F L L E V C Q F L W N I R T E A Q L Y M F Y W K C V S F Y G I F A L K P S Y I W L S I G S V S V F M E Y S H - S P V I Y . . . . . . 44506 GACTCATACATAATAAGGCTCCATTGGTACGGAAGTACTCTACCAAAGATTTGAACCAAG D S Y I I R L H W Y G S T L P K I - T K T H T - - G S I G T E V L Y Q R F E P R G L I H N K A P L V R K Y S T K D L N Q . . . . . . 44446 ACCTCTGTTTACAAGGATAGCAATCCCGTCCACAACATCGCATCTTGCTTATAAGTTTTT T S V Y K D S N P V H N I A S C L - V F P L F T R I A I P S T T S H L A Y K F L D L C L Q G - Q S R P Q H R I L L I S F . . . . . . 44386 GCAGTGAGTATATGTAAATATATGTGTATAGTCATTTTTCCTTTTACAAAATACATAGTA A V S I C K Y M C I V I F P F T K Y I V Q - V Y V N I C V - S F F L L Q N T - - C S E Y M - I Y V Y S H F S F Y K I H S . . . . . . 44326 ATATTTTAGTATAAGGATTGTAGTTTATTACTAAATTGATATTGTAATGTCAAATTTGGA I F - Y K D C S L L L N - Y C N V K F G Y F S I R I V V Y Y - I D I V M S N L E N I L V - G L - F I T K L I L - C Q I W . . . . . . 44266 ACTAATGAAGCCAAAGTTTATATCAACTCCGTCTAACAGAGTATCTTTGAGAAGAAAAAG T N E A K V Y I N S V - Q S I F E K K K L M K P K F I S T P S N R V S L R R K S N - - S Q S L Y Q L R L T E Y L - E E K . . . . . . 44206 TTAAATCACGTGAAGCACAAGATTGTTGATGCTGAGCACTAGGAAGAGATAACTTCTTGA L N H V K H K I V D A E H - E E I T S - - I T - S T R L L M L S T R K R - L L D V K S R E A Q D C - C - A L G R D N F L . . . . . . 44146 TGATATAGATTTTATACAAAGAGAACTAAGGTTGAGCATGCTCCGTTGCCCATGGATGAA - Y R F Y T K R T K V E H A P L P M D E D I D F I Q R E L R L S M L R C P W M K M I - I L Y K E N - G - A C S V A H G - . . . . . . 44086 ATAAGGATGCTGCTGGAAGTGGTCGAATATCAGCAATATTATCGCAATGCAACAGGAAAG I R M L L E V V E Y Q Q Y Y R N A T G K - G C C W K W S N I S N I I A M Q Q E R N K D A A G S G R I S A I L S Q C N R K . 44026 GAGAA E R G E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 44022 TTCTCCTTTCCTGTTGCATTGCGATAATATTGCTGATATTCGACCACTTCCAGCAGCATC F S F P V A L R - Y C - Y S T T S S S I S P F L L H C D N I A D I R P L P A A S L L S C C I A I I L L I F D H F Q Q H . . . . . . 44082 CTTATTTCATCCATGGGCAACGGAGCATGCTCAACCTTAGTTCTCTTTGTATAAAATCTA L I S S M G N G A C S T L V L F V - N L L F H P W A T E H A Q P - F S L Y K I Y P Y F I H G Q R S M L N L S S L C I K S . . . . . . 44142 TATCATCAAGAAGTTATCTCTTCCTAGTGCTCAGCATCAACAATCTTGTGCTTCACGTGA Y H Q E V I S S - C S A S T I L C F T - I I K K L S L P S A Q H Q Q S C A S R D I S S R S Y L F L V L S I N N L V L H V . . . . . . 44202 TTTAACTTTTTCTTCTCAAAGATACTCTGTTAGACGGAGTTGATATAAACTTTGGCTTCA F N F F F S K I L C - T E L I - T L A S L T F S S Q R Y S V R R S - Y K L W L H I - L F L L K D T L L D G V D I N F G F . . . . . . 44262 TTAGTTCCAAATTTGACATTACAATATCAATTTAGTAATAAACTACAATCCTTATACTAA L V P N L T L Q Y Q F S N K L Q S L Y - - F Q I - H Y N I N L V I N Y N P Y T K I S S K F D I T I S I - - - T T I L I L . . . . . . 44322 AATATTACTATGTATTTTGTAAAAGGAAAAATGACTATACACATATATTTACATATACTC N I T M Y F V K G K M T I H I Y L H I L I L L C I L - K E K - L Y T Y I Y I Y S K Y Y Y V F C K R K N D Y T H I F T Y T . . . . . . 44382 ACTGCAAAAACTTATAAGCAAGATGCGATGTTGTGGACGGGATTGCTATCCTTGTAAACA T A K T Y K Q D A M L W T G L L S L - T L Q K L I S K M R C C G R D C Y P C K Q H C K N L - A R C D V V D G I A I L V N . . . . . . 44442 GAGGTCTTGGTTCAAATCTTTGGTAGAGTACTTCCGTACCAATGGAGCCTTATTATGTAT E V L V Q I F G R V L P Y Q W S L I M Y R S W F K S L V E Y F R T N G A L L C M R G L G S N L W - S T S V P M E P Y Y V . . . . . . 44502 GAGTCCATATATAACTGGGCTTCAGTGCGAATATTCCATAAAAACTGACACACTTCCAAT E S I Y N W A S V R I F H K N - H T S N S P Y I T G L Q C E Y S I K T D T L P I - V H I - L G F S A N I P - K L T H F Q . . . . . . 44562 AGAAAGAACTTGGCAAAACATTGTGAACTTCTGCCAGAAAAAGAATATAATTTTATCAGA R K N L A K H C E L L P E K E Y N F I R E R T W Q N I V N F C Q K K N I I L S E - K E L G K T L - T S A R K R I - F Y Q . . . . . . 44622 GTAATATTAGCAAATCATTTTTGTTCCAATGCTAGATAATTCATAATCAAATTACAGTAG V I L A N H F C S N A R - F I I K L Q - - Y - Q I I F V P M L D N S - S N Y S S S N I S K S F L F Q C - I I H N Q I T V . . . . . . 44682 CATAGAAGGAAGAAAAGGTTGAAATTACAACCAGAAAAAAGGAAAACAAAAATAGGATAA H R R K K R L K L Q P E K R K T K I G - I E G R K G - N Y N Q K K G K Q K - D K A - K E E K V E I T T R K K E N K N R I . . . . . . 44742 GTTTTGAGGTATACCTGGAGATGGAGTTTTTGCTCGCAAAGAGGATGATGTGATGGGACT V L R Y T W R W S F C S Q R G - C D G T F - G I P G D G V F A R K E D D V M G L S F E V Y L E M E F L L A K R M M - W D . 44802 TCTGC S L F C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-10_AGS-1_PPS_1 (44356 44625) (frame '2'; 267 bp, 89 residues) 1 LYTYIYIYSL QKLISKMRCC GRDCYPCKQR SWFKSLVEYF RTNGALLCMS PYITGLQCEY 61 SIKTDTLPIE RTWQNIVNFC QKKNIILSE- PGL 11 (- strand): 46087 45164 AGS-1 (46087 46045,45891 45777,45614 45164) SCR (e 0.895 d 0.970 a 0.989,e 1.000 d 0.859 a 0.143,e 1.000) Exon 1 46087 46045 ( 43 n); score: 0.895 Intron 1 46044 45892 ( 153 n); Pd: 0.970 Pa: 0.989 Exon 2 45891 45777 ( 115 n); score: 1.000 Intron 2 45776 45615 ( 162 n); Pd: 0.859 Pa: 0.143 Exon 3 45614 45164 ( 451 n); score: 1.000 PGS (46087 46045,45891 45777,45614 45164) SGN-U343134+ 3-phase translation of AGS-1 (-strand): . . . . . : . 46087 CTTTCCAGGAGAGGATATCTCGTACCCCTGAGCAAGTATTAAG : GTACTATAGAGATGCTG L S R R G Y L V P L S K Y - : G T I E M L F P G E D I S Y P - A S I K : V L - R C W F Q E R I S R T P E Q V L R : Y Y R D A . . . . . . 45874 GAGCAAAACCATTATGGCCAACGTCAAGTGGCCAACCATCAAAAGCTGACATCCCTAAGT E Q N H Y G Q R Q V A N H Q K L T S L S S K T I M A N V K W P T I K S - H P - V G A K P L W P T S S G Q P S K A D I P K . . . . : . . 45814 GCACCTATTGTGGCGATCATAGGGCTTTTGAATTTCAG : GTTTTACCACAAATACTCTATT A P I V A I I G L L N F R : F Y H K Y S I H L L W R S - G F - I S : G F T T N T L L C T Y C G D H R A F E F Q : V L P Q I L Y . . . . . . 45592 ATTTTGGTGTGGAAAATGATGTGCATTCTCTTGATTGGGCTACTATTGCTGTGTACACCT I L V W K M M C I L L I G L L L L C T P F W C G K - C A F S - L G Y Y C C V H L Y F G V E N D V H S L D W A T I A V Y T . . . . . . 45532 GTGAATCCTCGTGCGATGGACATATAGCTTACAAGGAGGAATTTGCTTGGGTTCAAATTG V N P R A M D I - L T R R N L L G F K L - I L V R W T Y S L Q G G I C L G S N C C E S S C D G H I A Y K E E F A W V Q I . . . . . . 45472 CATCTCAATCAAGCACAACCCAGAGATGAGACGCGTAAAGCATGGTTTGAAACAAGATTG H L N Q A Q P R D E T R K A W F E T R L I S I K H N P E M R R V K H G L K Q D - A S Q S S T T Q R - D A - S M V - N K I . . . . . . 45412 ATAATGGACCGCACTCTACCCTTCACTTAAATACCAGACTTCTGGTTTGCCGTGAGATTC I M D R T L P F T - I P D F W F A V R F - W T A L Y P S L K Y Q T S G L P - D S D N G P H S T L H L N T R L L V C R E I . . . . . . 45352 AACTCATGATGTGCACTTAACCTGCACAACATGCCTCGCGCTAAAATTTTGTTTTCCTTT N S - C A L N L H N M P R A K I L F S F T H D V H L T C T T C L A L K F C F P L Q L M M C T - P A Q H A S R - N F V F L . . . . . . 45292 ATATTAATTTTTCTCAGATCATTTTTAGTTTTCCTGGTTAATTTGCAAACGTTTCACATT I L I F L R S F L V F L V N L Q T F H I Y - F F S D H F - F S W L I C K R F T L Y I N F S Q I I F S F P G - F A N V S H . . . . . . 45232 ACAACGTCAGTAGTGAATATTTTGTTGTAATAGTATGTTTTTCTCATCAATCGAGGTGTT T T S V V N I L L - - Y V F L I N R G V Q R Q - - I F C C N S M F F S S I E V F Y N V S S E Y F V V I V C F S H Q S R C . 45172 CAGCGTAAA Q R K S V S A - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-11_AGS-1_PPS_1 (46085 46045,45891 45777,45614 45444) (frame '0'; 324 bp, 108 residues) 1 FQERISRTPE QVLRYYRDAG AKPLWPTSSG QPSKADIPKC TYCGDHRAFE FQVLPQILYY 61 FGVENDVHSL DWATIAVYTC ESSCDGHIAY KEEFAWVQIA SQSSTTQR- PGL 12 (- strand): 50069 46500 AGS-1 (50069 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) SCR (e 1.000 d 0.939 a 0.532,e 1.000 d 0.236 a 0.974,e 1.000 d 0.991 a 0.835,e 1.000 d 0.974 a 0.217,e 1.000 d 0.949 a 0.997,e 1.000 d 0.958 a 0.908,e 1.000) Exon 1 50069 49959 ( 111 n); score: 1.000 Intron 1 49958 49652 ( 307 n); Pd: 0.939 Pa: 0.532 Exon 2 49651 49387 ( 265 n); score: 1.000 Intron 2 49386 49274 ( 113 n); Pd: 0.236 Pa: 0.974 Exon 3 49273 49190 ( 84 n); score: 1.000 Intron 3 49189 47269 (1921 n); Pd: 0.991 Pa: 0.835 Exon 4 47268 47135 ( 134 n); score: 1.000 Intron 4 47134 47041 ( 94 n); Pd: 0.974 Pa: 0.217 Exon 5 47040 46943 ( 98 n); score: 1.000 Intron 5 46942 46746 ( 197 n); Pd: 0.949 Pa: 0.997 Exon 6 46745 46657 ( 89 n); score: 1.000 Intron 6 46656 46582 ( 75 n); Pd: 0.958 Pa: 0.908 Exon 7 46581 46500 ( 82 n); score: 1.000 PGS (50069 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46500) SGN-U325769+ 3-phase translation of AGS-1 (-strand): . . . . . . 50069 GTTGCTCTGTTCCAGCTGTTTGCTGTTTGCTGTTTGAGGTCTCAACACTCGCTTAATCTC V A L F Q L F A V C C L R S Q H S L N L L L C S S C L L F A V - G L N T R L I S C S V P A V C C L L F E V S T L A - S . . . . . . : 50009 AGCTAAATATAATTCAAAGCTGTAAAGGAAACGAGAAAACATCTAATTTAG : TTTAGCGAA S - I - F K A V K E T R K H L I - : F S E A K Y N S K L - R K R E N I - F S : L A K Q L N I I Q S C K G N E K T S N L : V - R . . . . . . 49642 AATGGAGGAAGAATTTAATGCTGGAAGGATCAAAGGCGCTGCTAAGAGGACTTTGCAAAT N G G R I - C W K D Q R R C - E D F A N M E E E F N A G R I K G A A K R T L Q I K W R K N L M L E G S K A L L R G L C K . . . . . . 49582 TACACCTCTTGATGAGGAAGATCAAGAAGAGGTTCAAATTGATGACAGTGGAGATGTTGA Y T S - - G R S R R G S N - - Q W R C - T P L D E E D Q E E V Q I D D S G D V D L H L L M R K I K K R F K L M T V E M L . . . . . . 49522 TTCGTATGATGATGATGATGAGACGGAGGAGGAGGATGAAGACAAGGAACCTGTGGGATT F V - - - - - D G G G G - R Q G T C G I S Y D D D D E T E E E D E D K E P V G L I R M M M M M R R R R R M K T R N L W D . . . . . . 49462 AGGGGTTCTTGAAAAGCCTGAGAATTCATGGTCACTGCTACGTGAGTTATTTCCAAGCAA R G S - K A - E F M V T A T - V I S K Q G V L E K P E N S W S L L R E L F P S K - G F L K S L R I H G H C Y V S Y F Q A . . : . . . . 49402 AGCTGGGGGTACTCCG : GCTTGGTTGGATCCAATAAACTTGCCAACAGGAAAATCCTGTCT S W G Y S : G L V G S N K L A N R K I L S A G G T P : A W L D P I N L P T G K S C L K L G V L R : L G W I Q - T C Q Q E N P V . . . . : . . 49229 TTGCGATATCTGTGGCGAGCCTTTGCAGTTCATGCTTCAG : GTTTACGCACCACTCACGGA L R Y L W R A F A V H A S : G L R T T H G C D I C G E P L Q F M L Q : V Y A P L T E F A I S V A S L C S S C F R : F T H H S R . . . . . . 47248 GAAGGATTCGACTTTTCATCGCACCTTATTTCTCTTCATGTGTACATCAATGACCTGTCT E G F D F S S H L I S L H V Y I N D L S K D S T F H R T L F L F M C T S M T C L R R I R L F I A P Y F S S C V H Q - P V . . . . . . : 47188 CCTTAAAGATCAACATGAGCAGTGGAAAAGGAACCAAGACAAGCAATCCAGGAG : TGTCAA P - R S T - A V E K E P R Q A I Q E : C Q L K D Q H E Q W K R N Q D K Q S R S : V K S L K I N M S S G K G T K T S N P G : V S . . . . . . 47034 GGTCTTTCGTTGCCAATTGCCCCGTGATAACTCTTTTTACTCCAGTGAACCCCCAAGAAA G L S L P I A P - - L F L L Q - T P K K V F R C Q L P R D N S F Y S S E P P R N R S F V A N C P V I T L F T P V N P Q E . . . . : . . 46974 CAATGGGAAAGATAAACCTTCTAGTCCTGGAG : CTGTTCTCTGTGGCTGGTGTGGTACATG Q W E R - T F - S W S : C S L W L V W Y M N G K D K P S S P G : A V L C G W C G T W T M G K I N L L V L E : L F S V A G V V H . . . . . . 46717 GAAAGGAGATAAAGTCTGTGGTGGTTGCCGAAGAGTACACTACTGCTCGGAGAAACATCA E R R - S L W W L P K S T L L L G E T S K G D K V C G G C R R V H Y C S E K H Q G K E I K S V V V A E E Y T T A R R N I . : . . . . . 46657 G : ACTGTTCATTGGAAATCAGGTCATAAACAACGCTGCTTACCCTCAAGCATTTCTCAGGA : D C S L E I R S - T T L L T L K H F S G : T V H W K S G H K Q R C L P S S I S Q D R : L F I G N Q V I N N A A Y P Q A F L R . . . 46522 TGCATCTGAACCTAGTAATAGTA C I - T - - - A S E P S N S M H L N L V I V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-12_AGS-1_PPS_1 (49963 49959,49651 49387,49273 49190,47268 47135,47040 46943,46745 46657,46581 46501) (frame '2'; 756 bp, 252 residues) 1 FSLAKMEEEF NAGRIKGAAK RTLQITPLDE EDQEEVQIDD SGDVDSYDDD DETEEEDEDK 61 EPVGLGVLEK PENSWSLLRE LFPSKAGGTP AWLDPINLPT GKSCLCDICG EPLQFMLQVY 121 APLTEKDSTF HRTLFLFMCT SMTCLLKDQH EQWKRNQDKQ SRSVKVFRCQ LPRDNSFYSS 181 EPPRNNGKDK PSSPGAVLCG WCGTWKGDKV CGGCRRVHYC SEKHQTVHWK SGHKQRCLPS 241 SISQDASEPS NS PGL 13 (- strand): 56805 51006 AGS-1 (56805 56713,55039 54957,53867 53272,52435 52324,51205 51006) SCR (e 1.000 d 0.991 a 0.962,e 1.000 d 0.977 a 0.985,e 0.997 d 0.993 a 1.000,e 1.000 d 0.781 a 0.999,e 0.918) Exon 1 56805 56713 ( 93 n); score: 1.000 Intron 1 56712 55040 (1673 n); Pd: 0.991 Pa: 0.962 Exon 2 55039 54957 ( 83 n); score: 1.000 Intron 2 54956 53868 (1089 n); Pd: 0.977 Pa: 0.985 Exon 3 53867 53272 ( 596 n); score: 0.997 Intron 3 53271 52436 ( 836 n); Pd: 0.993 Pa: 1.000 Exon 4 52435 52324 ( 112 n); score: 1.000 Intron 4 52323 51206 (1118 n); Pd: 0.781 Pa: 0.999 Exon 5 51205 51006 ( 200 n); score: 0.918 PGS (56805 56713,55039 54957,53867 53272,52435 52324,51205 51006) SGN-U322164+ 3-phase translation of AGS-1 (-strand): . . . . . . 56805 TCAGCAGAGTAGAAAGCGAAAATGGGGGAAAACGATTTGTGGGACGATTCAGCCCTTGTT S A E - K A K M G E N D L W D D S A L V Q Q S R K R K W G K T I C G T I Q P L L S R V E S E N G G K R F V G R F S P C . . . . : . . 56745 AATGCGTTCAACGATGCCGTATCCAAGTACAAG : ATTATGCATAGTTTAGAAGCTAAAGTT N A F N D A V S K Y K : I M H S L E A K V M R S T M P Y P S T R : L C I V - K L K L - C V Q R C R I Q V Q : D Y A - F R S - S . . . . . . : 55012 AGCAGCAAAGAGGAGAATGTGACAGCTCCTGATGACGGAAGCAATGAGCTGAAAAG : CAAA S S K E E N V T A P D D G S N E L K S : K A A K R R M - Q L L M T E A M S - K : A K - Q Q R G E C D S S - - R K Q - A E K : Q . . . . . . 53863 GGGGAGGGAGGTGATAACAGCAAACTTGCACCAGATACCACTACAGAAATGGGGGATGCA G E G G D N S K L A P D T T T E M G D A G R E V I T A N L H Q I P L Q K W G M Q R G G R - - Q Q T C T R Y H Y R N G G C . . . . . . 53803 AGCAGCCTTCCACCAGTAAAAGAAAATTCCTCTTTTGAGGCAGTTCCTCCTCAAAACCAC S S L P P V K E N S S F E A V P P Q N H A A F H Q - K K I P L L R Q F L L K T T K Q P S T S K R K F L F - G S S S S K P . . . . . . 53743 ACTGGTCAACTGAATGAGCAAAACACCCAGTATAAGGCCATAGAGAAGTGCAGTTCACAG T G Q L N E Q N T Q Y K A I E K C S S Q L V N - M S K T P S I R P - R S A V H R H W S T E - A K H P V - G H R E V Q F T . . . . . . 53683 AGTTTAGAAGATTACAACCAGTTACTCTACAAATATTACGAACTTGAGGATCAAAGGCAA S L E D Y N Q L L Y K Y Y E L E D Q R Q V - K I T T S Y S T N I T N L R I K G K E F R R L Q P V T L Q I L R T - G S K A . . . . . . 53623 AAGATTTTGCAGCAACTTAACCAGTTTGGCATTTGGGGTGATCAAAATTCTGGTTCTGCT K I L Q Q L N Q F G I W G D Q N S G S A R F C S N L T S L A F G V I K I L V L L K D F A A T - P V W H L G - S K F W F C . . . . . . 53563 TCTCAAGAACATCAAGCTTATGCATCACATAATTTAAATCCAACAGAGTCTTCTTTCTAC S Q E H Q A Y A S H N L N P T E S S F Y L K N I K L M H H I I - I Q Q S L L S T F S R T S S L C I T - F K S N R V F F L . . . . . . 53503 TGCCCATATGGATGCCAAAGTTGGGTATCTCCTTGCACTGCATCACCTTGTTGTTTGGGT C P Y G C Q S W V S P C T A S P C C L G A H M D A K V G Y L L A L H H L V V W V L P I W M P K L G I S L H C I T L L F G . . . . . . 53443 GTAAATGAGGATGACAAACCATGCGATGCGTCTATACGATGTGTTCAAGAAAAAAAATCA V N E D D K P C D A S I R C V Q E K K S - M R M T N H A M R L Y D V F K K K N H C K - G - Q T M R C V Y T M C S R K K I . . . . . . 53383 TCTCCTCAAAACCCTAGTTTGGTTGATACAGCAAAAGAAGCTGCAGAAAAAGCACTCTCC S P Q N P S L V D T A K E A A E K A L S L L K T L V W L I Q Q K K L Q K K H S P I S S K P - F G - Y S K R S C R K S T L . . . . . . : 53323 TCTTTAAAGCAAGCTTCTAACACGGCTTCACTGAATTCATTTGCAAAGGAAG : GAAAACAA S L K Q A S N T A S L N S F A K E : G K Q L - S K L L T R L H - I H L Q R K : E N K L F K A S F - H G F T E F I C K G R : K T . . . . . . 52427 ATAGAGATGATGAACCCTGTTGCTGCAGAGAAAACTGGCGGCTTGGAGACGGATCTATCG I E M M N P V A A E K T G G L E T D L S - R - - T L L L Q R K L A A W R R I Y R N R D D E P C C C R E N W R L G D G S I . . . . . : . 52367 GAAGTGCTAAATGCATGGTATTCTGCGGGCCTTTACACTGGAAA : GTATCTTTCAGAGCAA E V L N A W Y S A G L Y T G K : Y L S E Q K C - M H G I L R A F T L E : S I F Q S N G S A K C M V F C G P L H W K : V S F R A . . . . . . 51189 TCCAAGAAGAGAGATGGTTAGCGTCGTACTGATTCAGTTGGAACTTAAATGTGGTGTTGT S K K R D G - R R T D S V G T - M W C C P R R E M V S V V L I Q L E L K C G V V I Q E E R W L A S Y - F S W N L N V V L . . . . . . 51129 CGATACGACAAGAGGAAAAATTCATTGTACTAATGTTTGTGCACTAGAATTCAAAGCTGT R Y D K R K N S L Y - C L C T R I Q S C D T T R G K I H C T N V C A L E F K A V S I R Q E E K F I V L M F V H - N S K L . . . . . . 51069 GATGTAAAACTAGATGTTGTACAGCATTTCTGGTAGGTTGATTTTTCCAAATATTGACAA D V K L D V V Q H F W - V D F S K Y - Q M - N - M L Y S I S G R L I F P N I D N - C K T R C C T A F L V G - F F Q I L T . 51009 TACA Y T I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-13_AGS-1_PPS_1 (56793 56713,55039 54957,53867 53272,52435 52324,51205 51169) (frame '1'; 906 bp, 302 residues) 1 KAKMGENDLW DDSALVNAFN DAVSKYKIMH SLEAKVSSKE ENVTAPDDGS NELKSKGEGG 61 DNSKLAPDTT TEMGDASSLP PVKENSSFEA VPPQNHTGQL NEQNTQYKAI EKCSSQSLED 121 YNQLLYKYYE LEDQRQKILQ QLNQFGIWGD QNSGSASQEH QAYASHNLNP TESSFYCPYG 181 CQSWVSPCTA SPCCLGVNED DKPCDASIRC VQEKKSSPQN PSLVDTAKEA AEKALSSLKQ 241 ASNTASLNSF AKEGKQIEMM NPVAAEKTGG LETDLSEVLN AWYSAGLYTG KYLSEQSKKR 301 DG- AGS-2 (51579 51457) SCR (e 0.935) Exon 1 51579 51457 ( 123 n); score: 0.935 PGS (51579 51457) SGN-U327252- 3-phase translation of AGS-2 (-strand): . . . . . . 51579 TTTCACAAATGGTATTGAAATAAGGCCACCTTTTGATTGCAGCCAAGGCAAGAATGCCAC F H K W Y - N K A T F - L Q P R Q E C H F T N G I E I R P P F D C S Q G K N A T S Q M V L K - G H L L I A A K A R M P . . . . . . 51519 GAATGGTGTTTAGCAACCTGAAGCAAATGTTTTCCCTATCTCTAAAGGGGGCCCTTGGGC E W C L A T - S K C F P Y L - R G P L G N G V - Q P E A N V F P I S K G G P W A R M V F S N L K Q M F S L S L K G A L G . 51459 CAC H P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 51457 GTGGCCCAAGGGCCCCCTTTAGAGATAGGGAAAACATTTGCTTCAGGTTGCTAAACACCA V A Q G P P L E I G K T F A S G C - T P W P K G P L - R - G K H L L Q V A K H H G P R A P F R D R E N I C F R L L N T . . . . . . 51517 TTCGTGGCATTCTTGCCTTGGCTGCAATCAAAAGGTGGCCTTATTTCAATACCATTTGTG F V A F L P W L Q S K G G L I S I P F V S W H S C L G C N Q K V A L F Q Y H L - I R G I L A L A A I K R W P Y F N T I C . 51577 AAA K E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (+ strand): 59622 68546 AGS-1 (59622 59949,61337 61455,61860 63103,63556 63797,64975 65072,66128 66307,66393 66488,67962 68412) SCR (e 0.985 d 0.997 a 0.918,e 1.000 d 0.823 a 0.996,e 1.000 d 0.970 a 0.934,e 1.000 d 0.970 a 0.999,e 1.000 d 0.000 a 0.990,e 1.000 d 0.916 a 0.943,e 1.000 d 0.796 a 0.994,e 0.986) Exon 1 59622 59949 ( 328 n); score: 0.985 Intron 1 59950 61336 (1387 n); Pd: 0.997 Pa: 0.918 Exon 2 61337 61455 ( 119 n); score: 1.000 Intron 2 61456 61859 ( 404 n); Pd: 0.823 Pa: 0.996 Exon 3 61860 63103 (1244 n); score: 1.000 Intron 3 63104 63555 ( 452 n); Pd: 0.970 Pa: 0.934 Exon 4 63556 63797 ( 242 n); score: 1.000 Intron 4 63798 64974 (1177 n); Pd: 0.970 Pa: 0.999 Exon 5 64975 65072 ( 98 n); score: 1.000 Intron 5 65073 66127 (1055 n); Pd: 0.000 Pa: 0.990 Exon 6 66128 66307 ( 180 n); score: 1.000 Intron 6 66308 66392 ( 85 n); Pd: 0.916 Pa: 0.943 Exon 7 66393 66488 ( 96 n); score: 1.000 Intron 7 66489 67961 (1473 n); Pd: 0.796 Pa: 0.994 Exon 8 67962 68412 ( 451 n); score: 0.986 PGS (59622 59949,61337 61455,61860 63103,63556 63797,64975 65072,66128 66307,66393 66488,67962 68412) SGN-U315068+ PGS (68085 68281) SGN-U315067+ 3-phase translation of AGS-1 (+strand): . . . . . . 59622 TTTGCCGACCTCTCCTTCCTACCTTTTTCGCTGAAAAATATTTAATTTTATTTATTTTCT F A D L S F L P F S L K N I - F Y L F S L P T S P S Y L F R - K I F N F I Y F L C R P L L P T F F A E K Y L I L F I F . . . . . . 59682 TTCTTTTCGCCCAAGTAACTTACAATATTCAAAGTGTTGAATTTTTCTCACAAACTATAA F F S P K - L T I F K V L N F S H K L - S F R P S N L Q Y S K C - I F L T N Y K F L F A Q V T Y N I Q S V E F F S Q T I . . . . . . 59742 ATGTTATCTTTATTATTAATTATAATAATAATAATTTAGCTGATGAATTTCACAAGCTAT M L S L L L I I I I I I - L M N F T S Y C Y L Y Y - L - - - - F S - - I S Q A I N V I F I I N Y N N N N L A D E F H K L . . . . . . 59802 TCAGTGAATTCCATCTCCGTATCAACGCCGTCGTCTCGAGATCTCCGTTGCTTTGTTTGA S V N S I S V S T P S S R D L R C F V - Q - I P S P Y Q R R R L E I S V A L F D F S E F H L R I N A V V S R S P L L C L . . . . . . 59862 TCGTTTGTTTCTCAGTTATCCCTGTATCCTTTGTTCTTTCTCCGAGACGACGACAAAGAT S F V S Q L S L Y P L F F L R D D D K D R L F L S Y P C I L C S F S E T T T K I I V C F S V I P V S F V L S P R R R Q R . . . : . . . 59922 AAAGACGACGGCGTTTGATCTATGAAAG : AGGAGGTGAATTAAATTAGCGCGTAAGTTACC K D D G V - S M K : E E V N - I S A - V T K T T A F D L - K : R R - I K L A R K L P - R R R R L I Y E R : G G E L N - R V S Y . . . . . . 61369 TTTGTACAAAGGGAAATTTGTTGACTTGACATCAACATTATGGAGAGAACGTGCTTCTAC F V Q R E I C - L D I N I M E R T C F Y L Y K G K F V D L T S T L W R E R A S T L C T K G N L L T - H Q H Y G E N V L L . . . : . . . 61429 CGAGATGGCCACTCATTGCAGAATTTG : GTTTTGCATTTCGTTCTCCATGATGCGGCTTCT R D G H S L Q N L : V L H F V L H D A A S E M A T H C R I W : F C I S F S M M R L L P R W P L I A E F : G F A F R S P - C G F . . . . . . 61893 CAGAAATTTGTTATGACAGACCTGTGCTATACTAGTTTAGGATTTAGTCTTTCTGTTAGA Q K F V M T D L C Y T S L G F S L S V R R N L L - Q T C A I L V - D L V F L L E S E I C Y D R P V L Y - F R I - S F C - . . . . . . 61953 AATTTGTAAATAGTAGTTGCCTGTAGATAAATGGAGTCAAACTGGGTTGAAGTGTTAGAT N L - I V V A C R - M E S N W V E V L D I C K - - L P V D K W S Q T G L K C - I K F V N S S C L - I N G V K L G - S V R . . . . . . 62013 AATGACCGTAGGACAGCTGACGTCGACTCAAAAAGTAAAGTAGCGTCTCAGTACGTGGCA N D R R T A D V D S K S K V A S Q Y V A M T V G Q L T S T Q K V K - R L S T W H - - P - D S - R R L K K - S S V S V R G . . . . . . 62073 CGTATAGTTGGAGCTGGCACTGAGAAGCTGGAGGAGCTATCATTTCAACCAAATTGTAGC R I V G A G T E K L E E L S F Q P N C S V - L E L A L R S W R S Y H F N Q I V A T Y S W S W H - E A G G A I I S T K L - . . . . . . 62133 TCATTTTATAGCACGCTTGGTAAGAGGAAGAGGACTGTGGAAGGTGAAACTAATTGCAGA S F Y S T L G K R K R T V E G E T N C R H F I A R L V R G R G L W K V K L I A D L I L - H A W - E E E D C G R - N - L Q . . . . . . 62193 TCACATCTCAGGAAATCGACAGTTAAGAACTACTCAAATTTCATTAAAAGTGGACTGCCA S H L R K S T V K N Y S N F I K S G L P H I S G N R Q L R T T Q I S L K V D C H I T S Q E I D S - E L L K F H - K W T A . . . . . . 62253 CAACGTGTTTTATATCATCAGAATGGTGAATGGAATGATTTCCCTCAAGATATTGTTCGT Q R V L Y H Q N G E W N D F P Q D I V R N V F Y I I R M V N G M I S L K I L F V T T C F I S S E W - M E - F P S R Y C S . . . . . . 62313 ATTGTCAAAGAAGATTTCCGTGCAAAGAAGGCTGTGATTGAGGTGAACTTTGGTGGCTTT I V K E D F R A K K A V I E V N F G G F L S K K I S V Q R R L - L R - T L V A F Y C Q R R F P C K E G C D - G E L W W L . . . . . . 62373 CATGTAATACTTGATATTCTATATATGGTTCAGGTAAATTTGGTTACCGGATTGGAGAAA H V I L D I L Y M V Q V N L V T G L E K M - Y L I F Y I W F R - I W L P D W R N S C N T - Y S I Y G S G K F G Y R I G E . . . . . . 62433 CCTATTGCCTGGATAGACGAAGCAGGTGGCTGTTTCTTCCCTGATTTATGTCTCGTTAGT P I A W I D E A G G C F F P D L C L V S L L P G - T K Q V A V S S L I Y V S L V T Y C L D R R S R W L F L P - F M S R - . . . . . . 62493 TGTAAAGCGCACGACAACATTGAGATACAATCGCAGAGAACTGAAGGATTCAGTGCTGCT C K A H D N I E I Q S Q R T E G F S A A V K R T T T L R Y N R R E L K D S V L L L - S A R Q H - D T I A E N - R I Q C C . . . . . . 62553 GAGCCAGATAGGGCTACTAATATCAAGTTGCATCTTGAAATAGATATTAATGGACCGAAC E P D R A T N I K L H L E I D I N G P N S Q I G L L I S S C I L K - I L M D R T - A R - G Y - Y Q V A S - N R Y - W T E . . . . . . 62613 AATTGCAAATTGGATGAAGGTATGGAAGAGTCAAATGTCCGTGTTAAAAGGATTAAAGTC N C K L D E G M E E S N V R V K R I K V I A N W M K V W K S Q M S V L K G L K S Q L Q I G - R Y G R V K C P C - K D - S . . . . . . 62673 GATCCTTTAAAAGATAATCAACAATTTGCTGTTGATCAAAAATCATATCCTAAAATGGAA D P L K D N Q Q F A V D Q K S Y P K M E I L - K I I N N L L L I K N H I L K W K R S F K R - S T I C C - S K I I S - N G . . . . . . 62733 GTAGTGGCAGAAAATCAACAGGATCAGGAAAGTCTGTCTCCTATATTAGAAGATACACTT V V A E N Q Q D Q E S L S P I L E D T L - W Q K I N R I R K V C L L Y - K I H L S S G R K S T G S G K S V S Y I R R Y T . . . . . . 62793 AAGTTGGTGGATGCAGAATCGGTTAAAACTATGTTTGTTAAGGGAATGAATACCATCTAT K L V D A E S V K T M F V K G M N T I Y S W W M Q N R L K L C L L R E - I P S I - V G G C R I G - N Y V C - G N E Y H L . . . . . . 62853 ATGGTGGATATAGTCAAAATTAGTCAATGCTCAAGTAAATATATGAGAAATCGCTTGGAA M V D I V K I S Q C S S K Y M R N R L E W W I - S K L V N A Q V N I - E I A W N Y G G Y S Q N - S M L K - I Y E K S L G . . . . . . 62913 CTGTTTGAGAAGCAGGCTGAGATAACTCAAAAGTATCGTGGGAAATCCAATGTTCGGCAT L F E K Q A E I T Q K Y R G K S N V R H C L R S R L R - L K S I V G N P M F G M T V - E A G - D N S K V S W E I Q C S A . . . . . . 62973 GCTTGGCTTGCCGCTTCCAAAGAGGTAGTATCTACAATTATGAACTATGGGCTTATGCAT A W L A A S K E V V S T I M N Y G L M H L G L P L P K R - Y L Q L - T M G L C M C L A C R F Q R G S I Y N Y E L W A Y A . . . . . . 63033 GGGGCCTGTGGACAGAAGACTAAGCTTGGTGTTGGAGTGCACCTCATTGCCCAGGACTGT G A C G Q K T K L G V G V H L I A Q D C G P V D R R L S L V L E C T S L P R T V W G L W T E D - A W C W S A P H C P G L . . : . . . . 63093 GCCTCTAAAAG : TGCCGCTAGCTGTGATATTGACGAAAATGGCATCCGTTACATGGTTCTT A S K S : A A S C D I D E N G I R Y M V L P L K : V P L A V I L T K M A S V T W F F C L - K : C R - L - Y - R K W H P L H G S . . . . . . 63605 TGTCGTGTCATTTTGGGCAATGAAGAACTTTTGCATTTTGGCTCTCATCAATCTTATCCA C R V I L G N E E L L H F G S H Q S Y P V V S F W A M K N F C I L A L I N L I Q L S C H F G Q - R T F A F W L S S I L S . . . . . . 63665 AGCAATGAGAGATATGATAGTGGTGTTGATGATCTCGAGAGTCCTACTCACTATACTGTT S N E R Y D S G V D D L E S P T H Y T V A M R D M I V V L M I S R V L L T I L F K Q - E I - - W C - - S R E S Y S L Y C . . . . . . 63725 TGGAACATGAATATGAATACACACATATATCCTGAATATGTCGTGAGCTTCAGGATGTCT W N M N M N T H I Y P E Y V V S F R M S G T - I - I H T Y I L N M S - A S G C L L E H E Y E Y T H I S - I C R E L Q D V . . : . . . . 63785 TCAGGAGCAGAAG : GGGCTCCAATAAAGGAAGAAAGTCGGCTTGATGTCTCCAGAGTTACT S G A E : G A P I K E E S R L D V S R V T Q E Q K : G L Q - R K K V G L M S P E L L F R S R R : G S N K G R K S A - C L Q S Y . . . . . . : 65022 TCTCAGGGATCTGAGGAGCGATTGGACTTGAATAAATTGCCTACAGAATTG : GGGAACTGT S Q G S E E R L D L N K L P T E L : G N C L R D L R S D W T - I N C L Q N W : G T V F S G I - G A I G L E - I A Y R I : G E L . . . . . . 66137 CAGCAATATCAATTTGTAAGAAACATACAGCAATCCCATGGTGTTGGTGTGGGTACCAAT Q Q Y Q F V R N I Q Q S H G V G V G T N S N I N L - E T Y S N P M V L V W V P I S A I S I C K K H T A I P W C W C G Y Q . . . . . . 66197 AAATCACCTAAATCCCCCTGGATGCCTTTCTCTATGTTATTCGGAGCTATTTCAGCTAAA K S P K S P W M P F S M L F G A I S A K N H L N P P G C L S L C Y S E L F Q L K - I T - I P L D A F L Y V I R S Y F S - . . . . . . : 66257 GTGTCTCCAAAAGATTTGAAATTGGTTCATGCACATTATGACTTGTTCAGG : AGCAAAAAA V S P K D L K L V H A H Y D L F R : S K K C L Q K I - N W F M H I M T C S G : A K K S V S K R F E I G S C T L - L V Q : E Q K . . . . . . 66402 ATTTCCCGGAATGATTTCATTAGAAGGCTGAGGTTGATAGTGGGTGATCAGTTATTGAAG I S R N D F I R R L R L I V G D Q L L K F P G M I S L E G - G - - W V I S Y - S N F P E - F H - K A E V D S G - S V I E . . . : . . . 66462 TCTACCATAACCAATCTCCAGTGTAAG : CCGCCTTCCGCATCTCCATGCTTTCTGAATGTG S T I T N L Q C K : P P S A S P C F L N V L P - P I S S V S : R L P H L H A F - M C V Y H N Q S P V - : A A F R I S M L S E C . . . . . . 67995 CCGAGTGGGGAGAGTAATTGTTGAGGCTGTACCAGCAAGGGTGGATCGCTGCGTGGTGGC P S G E S N C - G C T S K G G S L R G G R V G R V I V E A V P A R V D R C V V A A E W G E - L L R L Y Q Q G W I A A W W . . . . . . 68055 GAAGAGTCCACTTTTACCAATCAAGCGTCGTCCTCTTCTCTCTATCTCTCTTTGTTTTTG E E S T F T N Q A S S S S L Y L S L F L K S P L L P I K R R P L L S I S L C F W R R V H F Y Q S S V V L F S L S L F V F . . . . . . 68115 GTGTTATGTAGCTTTAGTTTCTTTGAACATTTTGTGATTATATGCAGTTATGTCTAGACT V L C S F S F F E H F V I I C S Y V - T C Y V A L V S L N I L - L Y A V M S R L G V M - L - F L - T F C D Y M Q L C L D . . . . . . 68175 TGCACCTTCTGTTCTTCTATATATGCGACTTCCAATTCTCTCCCGTCTGTGATGGCAATA C T F C S S I Y A T S N S L P S V M A I A P S V L L Y M R L P I L S R L - W Q - L H L L F F Y I C D F Q F S P V C D G N . . . . . . 68235 ATTGGTGCACAGCAGGAGTTACTGGAGCTTAAATTGGTTTTAGGTTGGCATCTTGAAAGT I G A Q Q E L L E L K L V L G W H L E S L V H S R S Y W S L N W F - V G I L K V N W C T A G V T G A - I G F R L A S - K . . . . . . 68295 GCTGCTAGTCGGTTTAATCATGGTTTGAAGAGAATAAAACTGTAGCAAACATCGGTGGCG A A S R F N H G L K R I K L - Q T S V A L L V G L I M V - R E - N C S K H R W R C C - S V - S W F E E N K T V A N I G G . . . . . . 68355 TTGTATTTTAACAAAAACTTAGGCATTGTACTGTTATCACTTTGAAGCTGAGGGGTGA L Y F N K N L G I V L L S L - S - G V C I L T K T - A L Y C Y H F E A E G - V V F - Q K L R H C T V I T L K L R G Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-14_AGS-1_PPS_1 (61983 63103,63556 63797,64975 65072,66128 66307,66393 66488,67962 68018) (frame '1'; 1791 bp, 597 residues) 1 MESNWVEVLD NDRRTADVDS KSKVASQYVA RIVGAGTEKL EELSFQPNCS SFYSTLGKRK 61 RTVEGETNCR SHLRKSTVKN YSNFIKSGLP QRVLYHQNGE WNDFPQDIVR IVKEDFRAKK 121 AVIEVNFGGF HVILDILYMV QVNLVTGLEK PIAWIDEAGG CFFPDLCLVS CKAHDNIEIQ 181 SQRTEGFSAA EPDRATNIKL HLEIDINGPN NCKLDEGMEE SNVRVKRIKV DPLKDNQQFA 241 VDQKSYPKME VVAENQQDQE SLSPILEDTL KLVDAESVKT MFVKGMNTIY MVDIVKISQC 301 SSKYMRNRLE LFEKQAEITQ KYRGKSNVRH AWLAASKEVV STIMNYGLMH GACGQKTKLG 361 VGVHLIAQDC ASKSAASCDI DENGIRYMVL CRVILGNEEL LHFGSHQSYP SNERYDSGVD 421 DLESPTHYTV WNMNMNTHIY PEYVVSFRMS SGAEGAPIKE ESRLDVSRVT SQGSEERLDL 481 NKLPTELGNC QQYQFVRNIQ QSHGVGVGTN KSPKSPWMPF SMLFGAISAK VSPKDLKLVH 541 AHYDLFRSKK ISRNDFIRRL RLIVGDQLLK STITNLQCKP PSASPCFLNV PSGESNC- >C08HBa0320P23.1+_PGL-14_AGS-1_PPS_2 (59624 59923) (frame '0'; 297 bp, 99 residues) 1 CRPLLPTFFA EKYLILFIFF LFAQVTYNIQ SVEFFSQTIN VIFIINYNNN NLADEFHKLF 61 SEFHLRINAV VSRSPLLCLI VCFSVIPVSF VLSPRRRQR- AGS-2 (65237 65576,66128 66307,66393 66488,67962 68389) SCR (e 1.000 d 0.839 a 0.990,e 1.000 d 0.916 a 0.943,e 1.000 d 0.796 a 0.994,e 0.917) Exon 1 65237 65576 ( 340 n); score: 1.000 Intron 1 65577 66127 ( 551 n); Pd: 0.839 Pa: 0.990 Exon 2 66128 66307 ( 180 n); score: 1.000 Intron 2 66308 66392 ( 85 n); Pd: 0.916 Pa: 0.943 Exon 3 66393 66488 ( 96 n); score: 1.000 Intron 3 66489 67961 (1473 n); Pd: 0.796 Pa: 0.994 Exon 4 67962 68389 ( 428 n); score: 0.917 PGS (65237 65576,66128 66307,66393 66488,67962 68389) SGN-U334954+ PGS (65237 65576,66128 66307,66393 66488) SGN-U334955+ 3-phase translation of AGS-2 (+strand): . . . . . . 65237 TACATCTATATGGGGCAACATGAAGTGCATCTCTTGGCACAAGTTGATTGCTCCAGTGGG Y I Y M G Q H E V H L L A Q V D C S S G T S I W G N M K C I S W H K L I A P V G H L Y G A T - S A S L G T S - L L Q W . . . . . . 65297 TACCTTCTGTGCGCTCGTCTTCAGAAAACTGAACTTTGACTTGAAATAGTATTCTTTGCT Y L L C A R L Q K T E L - L E I V F F A T F C A L V F R K L N F D L K - Y S L L V P S V R S S S E N - T L T - N S I L C . . . . . . 65357 GCGGGTGCACAAGAATTTGCAATATGAGGTTTGAAGGCTTTGTATCAGCACATATTTTTG A G A Q E F A I - G L K A L Y Q H I F L R V H K N L Q Y E V - R L C I S T Y F C C G C T R I C N M R F E G F V S A H I F . . . . . . 65417 TCTATATATGAATTTTCATTCATTGACAGTCCTTGGCGAACTTGTAAGAGGTGGATAAAG S I Y E F S F I D S P W R T C K R W I K L Y M N F H S L T V L G E L V R G G - S V Y I - I F I H - Q S L A N L - E V D K . . . . . . 65477 TTAGCTTCTCAGAGGATGTGTGAATTCTATAATTTTGATCATTTTGAAAGCAGAACTGTT L A S Q R M C E F Y N F D H F E S R T V - L L R G C V N S I I L I I L K A E L F V S F S E D V - I L - F - S F - K Q N C . . . . : . . 65537 CTGATGTTGAGCATTGTTGCACTTGATCTCCTCGCTTACG : GGGAACTGTCAGCAATATCA L M L S I V A L D L L A Y : G E L S A I S - C - A L L H L I S S L T : G N C Q Q Y Q S D V E H C C T - S P R L R : G T V S N I . . . . . . 66148 ATTTGTAAGAAACATACAGCAATCCCATGGTGTTGGTGTGGGTACCAATAAATCACCTAA I C K K H T A I P W C W C G Y Q - I T - F V R N I Q Q S H G V G V G T N K S P K N L - E T Y S N P M V L V W V P I N H L . . . . . . 66208 ATCCCCCTGGATGCCTTTCTCTATGTTATTCGGAGCTATTTCAGCTAAAGTGTCTCCAAA I P L D A F L Y V I R S Y F S - S V S K S P W M P F S M L F G A I S A K V S P K N P P G C L S L C Y S E L F Q L K C L Q . . . . : . . 66268 AGATTTGAAATTGGTTCATGCACATTATGACTTGTTCAGG : AGCAAAAAAATTTCCCGGAA R F E I G S C T L - L V Q : E Q K N F P E D L K L V H A H Y D L F R : S K K I S R N K I - N W F M H I M T C S G : A K K F P G . . . . . . 66413 TGATTTCATTAGAAGGCTGAGGTTGATAGTGGGTGATCAGTTATTGAAGTCTACCATAAC - F H - K A E V D S G - S V I E V Y H N D F I R R L R L I V G D Q L L K S T I T M I S L E G - G - - W V I S Y - S L P - . . : . . . . 66473 CAATCTCCAGTGTAAG : CCGCCTTCCGCATCTCCATGCTTTCTGAATGTGCCGAGTGGGGA Q S P V - : A A F R I S M L S E C A E W G N L Q C K : P P S A S P C F L N V P S G E P I S S V S : R L P H L H A F - M C R V G . . . . . . 68006 GAGTAATTGTTGAGGCTGTACCAGCAAGGGTGGATCGCTGCGTGGTGGCGAAGAGTCCAC E - L L R L Y Q Q G W I A A W W R R V H S N C - G C T S K G G S L R G G E E S T R V I V E A V P A R V D R C V V A K S P . . . . . . 68066 TTTTACCAATCAAGCGTCGTCCTCTTCTCTCTATCTCTCTTTGTTTTTGGTGTTATGTAG F Y Q S S V V L F S L S L F V F G V M - F T N Q A S S S S L Y L S L F L V L C S L L P I K R R P L L S I S L C F W C Y V . . . . . . 68126 CTTTAGTTTCTTTGAACATTTTGTGATTATATGCAGTTATGTCTAGACTTGCACCTTCTG L - F L - T F C D Y M Q L C L D L H L L F S F F E H F V I I C S Y V - T C T F C A L V S L N I L - L Y A V M S R L A P S . . . . . . 68186 TTCTTCTATATATGCGACTTCCAATTCTCTCCCGTCTGTGATGGCAATAATTGGTGCACA F F Y I C D F Q F S P V C D G N N W C T S S I Y A T S N S L P S V M A I I G A Q V L L Y M R L P I L S R L - W Q - L V H . . . . . . 68246 GCAGGAGTTACTGGAGCTTAAATTGGTTTTAGGTTGGCATCTTGAAAGTGCTGCTAGTCG A G V T G A - I G F R L A S - K C C - S Q E L L E L K L V L G W H L E S A A S R S R S Y W S L N W F - V G I L K V L L V . . . . . . 68306 GTTTAATCATGGTTTGAAGAGAATAAAACTGTAGCAAACATCGGTGGCGTTGTATTTTAA V - S W F E E N K T V A N I G G V V F - F N H G L K R I K L - Q T S V A L Y F N G L I M V - R E - N C S K H R W R C I L . . . 68366 CAAAAACTTAGGCATTGTACTGTT Q K L R H C T V K N L G I V L T K T - A L Y C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-14_AGS-2_PPS_1 (65547 65576,66128 66307,66393 66488,67962 68018) (frame '2'; 360 bp, 120 residues) 1 ALLHLISSLT GNCQQYQFVR NIQQSHGVGV GTNKSPKSPW MPFSMLFGAI SAKVSPKDLK 61 LVHAHYDLFR SKKISRNDFI RRLRLIVGDQ LLKSTITNLQ CKPPSASPCF LNVPSGESNC 121 - AGS-3 (66434 66488,67894 68546) SCR (e 1.000 d 0.796 a 0.980,e 0.982) Exon 1 66434 66488 ( 55 n); score: 1.000 Intron 1 66489 67893 (1405 n); Pd: 0.796 Pa: 0.980 Exon 2 67894 68546 ( 653 n); score: 0.982 PGS (66434 66488,67894 68546) SGN-U315066+ 3-phase translation of AGS-3 (+strand): . . . . . . : 66434 GTTGATAGTGGGTGATCAGTTATTGAAGTCTACCATAACCAATCTCCAGTGTAAG : GCTAC V D S G - S V I E V Y H N Q S P V - : G Y L I V G D Q L L K S T I T N L Q C K : A T - - W V I S Y - S L P - P I S S V R : L . . . . . . 67899 TGAATGAATAGTATAGAATGTTATCTGAGGGGGCCTTTAGAAGTTTGTTCTTTATGTTTG - M N S I E C Y L R G P L E V C S L C L E - I V - N V I - G G L - K F V L Y V C L N E - Y R M L S E G A F R S L F F M F . . . . . . 67959 CAGCCGCCTTCCGCATCTCCATGCTTTCTGAATGTGCCGAGTGGGGAGAGTAATTGTTGA Q P P S A S P C F L N V P S G E S N C - S R L P H L H A F - M C R V G R V I V E A A A F R I S M L S E C A E W G E - L L . . . . . . 68019 GGCTGTACCAGCAAGGGTGGATCGCTGCGTGGTGGCGAAGAGTCCACTTTTACCAATCAA G C T S K G G S L R G G E E S T F T N Q A V P A R V D R C V V A K S P L L P I K R L Y Q Q G W I A A W W R R V H F Y Q S . . . . . . 68079 GCGTCGTCCTCTTCTCTCTATCTCTCTTTGTTTTTGGTGTTATGTAGCTTTAGTTTCTTT A S S S S L Y L S L F L V L C S F S F F R R P L L S I S L C F W C Y V A L V S L S V V L F S L S L F V F G V M - L - F L . . . . . . 68139 GAACATTTTGTGATTATATGCAGTTATGTCTAGACTTGCACCTTCTGTTCTTCTATATAT E H F V I I C S Y V - T C T F C S S I Y N I L - L Y A V M S R L A P S V L L Y M - T F C D Y M Q L C L D L H L L F F Y I . . . . . . 68199 GCGACTTCCAATTCTCTCCCGTCTGTGATGGCAATAATTGGTGCACAGCAGGAGTTACTG A T S N S L P S V M A I I G A Q Q E L L R L P I L S R L - W Q - L V H S R S Y W C D F Q F S P V C D G N N W C T A G V T . . . . . . 68259 GAGCTTAAATTGGTTTTAGGTTGGCATCTTGAAAGTGCTGCTAGTCGGTTTAATCATGGT E L K L V L G W H L E S A A S R F N H G S L N W F - V G I L K V L L V G L I M V G A - I G F R L A S - K C C - S V - S W . . . . . . 68319 TTGAAGAGAATAAAACTGTAGCAAACATCGGTGGCGTTGTATTTTAACAAAAACTTAGGC L K R I K L - Q T S V A L Y F N K N L G - R E - N C S K H R W R C I L T K T - A F E E N K T V A N I G G V V F - Q K L R . . . . . . 68379 ATTGTACTGTTATCACTTTGAAGCTGAGGGGTGAAATTTTTCCTTTGAGTTTTCGCATTA I V L L S L - S - G V K F F L - V F A L L Y C Y H F E A E G - N F S F E F S H Y H C T V I T L K L R G E I F P L S F R I . . . . . . 68439 TTATGTTTCTAATTCACTTGCCTAAAAATTCTTGAACATTGTTATAATAGCCTTCTGGTA L C F - F T C L K I L E H C Y N S L L V Y V S N S L A - K F L N I V I I A F W Y I M F L I H L P K N S - T L L - - P S G . . . . . 68499 TGAACTTGTAATATTTCACTGGTACAATATGAATTTCTCTAGAATCGA - T C N I S L V Q Y E F L - N R E L V I F H W Y N M N F S R I M N L - Y F T G T I - I S L E S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (67138 67943) SCR (e 0.956) Exon 1 67138 67943 ( 806 n); score: 0.956 PGS (67138 67943) SGN-U342949+ 3-phase translation of AGS-4 (+strand): . . . . . . 67138 TGGGATTAATAATATCATTAATACACTCAGCTTTCACTTTAGTGTACCCAAGTCACAAAT W D - - Y H - Y T Q L S L - C T Q V T N G I N N I I N T L S F H F S V P K S Q M G L I I S L I H S A F T L V Y P S H K . . . . . . 67198 GTTTTTATAATGAAGTTAGTAACTTTACCTAAATATCATAGAATCACTGAACTATATTTT V F I M K L V T L P K Y H R I T E L Y F F L - - S - - L Y L N I I E S L N Y I F C F Y N E V S N F T - I S - N H - T I F . . . . . . 67258 TAATAAAAGTCTGTTACTGAGGAGAGAAGCTAAAATTTGCCTGAATATCATGGAGTCGCT - - K S V T E E R S - N L P E Y H G V A N K S L L L R R E A K I C L N I M E S L L I K V C Y - G E K L K F A - I S W S R . . . . . . 67318 TAGAGGGAAACAAATAAGACATTCTGTATGATATTTGAGTAAAGTGAATGATTCTTTTTA - R E T N K T F C M I F E - S E - F F L R G K Q I R H S V - Y L S K V N D S F Y L E G N K - D I L Y D I - V K - M I L F . . . . . . 67378 TTACAAAACATTGTTTAGTGACTTCTAGTGATATTTAGCCAAAGTTGAGTGACTATTGAC L Q N I V - - L L V I F S Q S - V T I D Y K T L F S D F - - Y L A K V E - L L T I T K H C L V T S S D I - P K L S D Y - . . . . . . 67438 TTGTAAAGTACCACTTTGTTCCTCTTGTAGTGTTTTATTCAAGAATTGATTGGATTTGTT L - S T T L F L L - C F I Q E L I G F V C K V P L C S S C S V L F K N - L D L F L V K Y H F V P L V V F Y S R I D W I C . . . . . . 67498 TTTATGGTACATGACAAATTTGTATTCCAATAAATCAAAAACTAGATTGATTAGGAATTG F M V H D K F V F Q - I K N - I D - E L L W Y M T N L Y S N K S K T R L I R N - F Y G T - Q I C I P I N Q K L D - L G I . . . . . . 67558 AGTGGCAAGTGCAATTTACTCTTTAAGTATACCATTTATTTGACCTGTAGTACGTGGTAC S G K C N L L F K Y T I Y L T C S T W Y V A S A I Y S L S I P F I - P V V R G T E W Q V Q F T L - V Y H L F D L - Y V V . . . . . . 67618 TGCATATATTTTTACCTGGATCTTTGAATTTCTCAGATGTACGGGTGGAACTTGTTAAGT C I Y F Y L D L - I S Q M Y G W N L L S A Y I F T W I F E F L R C T G G T C - V L H I F L P G S L N F S D V R V E L V K . . . . . . 67678 CTCGTCCCATGACGTGACTTCTCTTGGTGACACATTTTCCTGGGTTTATTTTATTAGTCT L V P - R D F S W - H I F L G L F Y - S S S H D V T S L G D T F S W V Y F I S L S R P M T - L L L V T H F P G F I L L V . . . . . . 67738 GGTTGGTATAGGTCTTTACACGACTTATTAGTACATCTATTTGGGCCTTCCCTTTGTTGC G W Y R S L H D L L V H L F G P S L C C V G I G L Y T T Y - Y I Y L G L P F V A W L V - V F T R L I S T S I W A F P L L . . . . . . 67798 TGTATTCTCTGTCGTCTCTTTTGCTTCTTTTATGTGGTGGGATTTATATATTCTACTCTT C I L C R L F C F F Y V V G F I Y S T L V F S V V S F A S F M W W D L Y I L L L L Y S L S S L L L L L C G G I Y I F Y S . . . . . . 67858 GGTAAGTAAATGGATGTGCAGTTTTGGTATATGCAGGCTACTGAATGAATAGTATAGAAT G K - M D V Q F W Y M Q A T E - I V - N V S K W M C S F G I C R L L N E - Y R M W - V N G C A V L V Y A G Y - M N S I E . . . 67918 GTTATCTGAGGGGGCCTTTAGAAGTT V I - G G L - K L S E G A F R S C Y L R G P L E V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (-strand): . . . . . . 67943 AACTTCTAAAGGCCCCCTCAGATAACATTCTATACTATTCATTCAGTAGCCTGCATATAC N F - R P P Q I T F Y T I H S V A C I Y T S K G P L R - H S I L F I Q - P A Y T L L K A P S D N I L Y Y S F S S L H I . . . . . . 67883 CAAAACTGCACATCCATTTACTTACCAAGAGTAGAATATATAAATCCCACCACATAAAAG Q N C T S I Y L P R V E Y I N P T T - K K T A H P F T Y Q E - N I - I P P H K R P K L H I H L L T K S R I Y K S H H I K . . . . . . 67823 AAGCAAAAGAGACGACAGAGAATACAGCAACAAAGGGAAGGCCCAAATAGATGTACTAAT K Q K R R Q R I Q Q Q R E G P N R C T N S K R D D R E Y S N K G K A Q I D V L I E A K E T T E N T A T K G R P K - M Y - . . . . . . 67763 AAGTCGTGTAAAGACCTATACCAACCAGACTAATAAAATAAACCCAGGAAAATGTGTCAC K S C K D L Y Q P D - - N K P R K M C H S R V K T Y T N Q T N K I N P G K C V T - V V - R P I P T R L I K - T Q E N V S . . . . . . 67703 CAAGAGAAGTCACGTCATGGGACGAGACTTAACAAGTTCCACCCGTACATCTGAGAAATT Q E K S R H G T R L N K F H P Y I - E I K R S H V M G R D L T S S T R T S E K F P R E V T S W D E T - Q V P P V H L R N . . . . . . 67643 CAAAGATCCAGGTAAAAATATATGCAGTACCACGTACTACAGGTCAAATAAATGGTATAC Q R S R - K Y M Q Y H V L Q V K - M V Y K D P G K N I C S T T Y Y R S N K W Y T S K I Q V K I Y A V P R T T G Q I N G I . . . . . . 67583 TTAAAGAGTAAATTGCACTTGCCACTCAATTCCTAATCAATCTAGTTTTTGATTTATTGG L K S K L H L P L N S - S I - F L I Y W - R V N C T C H S I P N Q S S F - F I G L K E - I A L A T Q F L I N L V F D L L . . . . . . 67523 AATACAAATTTGTCATGTACCATAAAAACAAATCCAATCAATTCTTGAATAAAACACTAC N T N L S C T I K T N P I N S - I K H Y I Q I C H V P - K Q I Q S I L E - N T T E Y K F V M Y H K N K S N Q F L N K T L . . . . . . 67463 AAGAGGAACAAAGTGGTACTTTACAAGTCAATAGTCACTCAACTTTGGCTAAATATCACT K R N K V V L Y K S I V T Q L W L N I T R G T K W Y F T S Q - S L N F G - I S L Q E E Q S G T L Q V N S H S T L A K Y H . . . . . . 67403 AGAAGTCACTAAACAATGTTTTGTAATAAAAAGAATCATTCACTTTACTCAAATATCATA R S H - T M F C N K K N H S L Y S N I I E V T K Q C F V I K R I I H F T Q I S Y - K S L N N V L - - K E S F T L L K Y H . . . . . . 67343 CAGAATGTCTTATTTGTTTCCCTCTAAGCGACTCCATGATATTCAGGCAAATTTTAGCTT Q N V L F V S L - A T P - Y S G K F - L R M S Y L F P S K R L H D I Q A N F S F T E C L I C F P L S D S M I F R Q I L A . . . . . . 67283 CTCTCCTCAGTAACAGACTTTTATTAAAAATATAGTTCAGTGATTCTATGATATTTAGGT L S S V T D F Y - K Y S S V I L - Y L G S P Q - Q T F I K N I V Q - F Y D I - V S L L S N R L L L K I - F S D S M I F R . . . . . . 67223 AAAGTTACTAACTTCATTATAAAAACATTTGTGACTTGGGTACACTAAAGTGAAAGCTGA K V T N F I I K T F V T W V H - S E S - K L L T S L - K H L - L G Y T K V K A E - S Y - L H Y K N I C D L G T L K - K L . . . 67163 GTGTATTAATGATATTATTAATCCCA V Y - - Y Y - S C I N D I I N P S V L M I L L I P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-14_AGS-4_PPS_1 (67840 67580) (frame '2'; 258 bp, 86 residues) 1 IPPHKRSKRD DREYSNKGKA QIDVLISRVK TYTNQTNKIN PGKCVTKRSH VMGRDLTSST 61 RTSEKFKDPG KNICSTTYYR SNKWYT- PGL 15 (- strand): 74335 68881 AGS-1 (73235 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70656,69659 69483,69327 68881) SCR (e 1.000 d 0.999 a 0.974,e 1.000 d 0.902 a 0.992,e 1.000 d 0.857 a 0.863,e 1.000 d 0.986 a 0.998,e 1.000 d 0.992 a 0.999,e 0.975 d 0.999 a 0.998,e 1.000 d 0.999 a 0.995,e 1.000) Exon 1 73235 72988 ( 248 n); score: 1.000 Intron 1 72987 72040 ( 948 n); Pd: 0.999 Pa: 0.974 Exon 2 72039 71852 ( 188 n); score: 1.000 Intron 2 71851 71782 ( 70 n); Pd: 0.902 Pa: 0.992 Exon 3 71781 71587 ( 195 n); score: 1.000 Intron 3 71586 71259 ( 328 n); Pd: 0.857 Pa: 0.863 Exon 4 71258 71197 ( 62 n); score: 1.000 Intron 4 71196 70923 ( 274 n); Pd: 0.986 Pa: 0.998 Exon 5 70922 70856 ( 67 n); score: 1.000 Intron 5 70855 70775 ( 81 n); Pd: 0.992 Pa: 0.999 Exon 6 70774 70656 ( 119 n); score: 0.975 Intron 6 70655 69660 ( 996 n); Pd: 0.999 Pa: 0.998 Exon 7 69659 69483 ( 177 n); score: 1.000 Intron 7 69482 69328 ( 155 n); Pd: 0.999 Pa: 0.995 Exon 8 69327 68881 ( 447 n); score: 1.000 PGS (73235 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70656,69659 69483,69327 68881) SGN-U320879+ 3-phase translation of AGS-1 (-strand): . . . . . . 73235 CAAACATGGCTTCTTCTTCTTCCTCTTCTTCTTCTTCAGTGGCTCTCAGTTTTCTCTACC Q T W L L L L P L L L L Q W L S V F S T K H G F F F F L F F F F S G S Q F S L P N M A S S S S S S S S S V A L S F L Y . . . . . . 73175 AAAACCCCATTAAAGCTTCACTCTCAATTCCAAAAGCTCTTTCTCCTTACTCAAAACTCA K T P L K L H S Q F Q K L F L L T Q N S K P H - S F T L N S K S S F S L L K T H Q N P I K A S L S I P K A L S P Y S K L . . . . . . 73115 CATTCCCATCTATTGCGACCTTTTATTCTGCAATTCCCCGTTTCGATTACAGTAATTTCA H S H L L R P F I L Q F P V S I T V I S I P I Y C D L L F C N S P F R L Q - F Q T F P S I A T F Y S A I P R F D Y S N F . . . . . . 73055 GAAAAATCAATCCATGTCTTCATTGCAGCAATCTTCCTACTGCTTCCACAAATAACACGC E K S I H V F I A A I F L L L P Q I T R K N Q S M S S L Q Q S S Y C F H K - H A R K I N P C L H C S N L P T A S T N N T . : . . . . . 72995 ATTACGAG : TTTTCAGATGGCTCCTCTGAGGTGGAGCTAAGATTAGAACTTGGGCAGGGAG I T S : F Q M A P L R W S - D - N L G R E L R : V F R W L L - G G A K I R T W A G R H Y E : F S D G S S E V E L R L E L G Q G . . . . . . 71987 ATGTAACTCCTAAGGATATATATGTAGATGCAAATGAGAGCTCATTAGCAATTAGAGTAC M - L L R I Y M - M Q M R A H - Q L E Y C N S - G Y I C R C K - E L I S N - S T D V T P K D I Y V D A N E S S L A I R V . . . . . . 71927 AGCAATCTGGAATTGTTCGGACTCTCATGGAAACCAGTACTCTGTATGAGAAAATAAAAC S N L E L F G L S W K P V L C M R K - N A I W N C S D S H G N Q Y S V - E N K T Q Q S G I V R T L M E T S T L Y E K I K . . : . . . . 71867 CTGCAGAGACAATATG : GTACATAGATGAAGATCAATTAGTAATTAGCTTGAAGAAGCAAA L Q R Q Y : G T - M K I N - - L A - R S K C R D N M : V H R - R S I S N - L E E A K P A E T I W : Y I D E D Q L V I S L K K Q . . . . . . 71737 ACTCCGAGTTGAAATGGCCTGACATTGTGGAGTCTTGGGAGTCCCTAAGTGCTGGAATTA T P S - N G L T L W S L G S P - V L E L L R V E M A - H C G V L G V P K C W N Y N S E L K W P D I V E S W E S L S A G I . . . . . . 71677 CACAACTCCTTAGAGGAACATCAATATACTTAGTTGGGGAATCTACTGAAATCAACCAGA H N S L E E H Q Y T - L G N L L K S T R T T P - R N I N I L S W G I Y - N Q P E T Q L L R G T S I Y L V G E S T E I N Q . . . . : . . 71617 GGATTGCTCGAGAACTGGCTGTTGGACTAGG : GTACACTCCACTTTGTACAAAGGAGCTGC G L L E N W L L D - : G T L H F V Q R S C D C S R T G C W T R : V H S T L Y K G A A R I A R E L A V G L G : Y T P L C T K E L . . . . : . . 71229 TAGAAACATATGCCAAGCAATCAATGGAAACGT : GGGTTAATGAGGAGGGGTCTGATGCTG - K H M P S N Q W K R : G L M R R G L M L R N I C Q A I N G N V : G - - G G V - C C L E T Y A K Q S M E T : W V N E E G S D A . . . . : . . 70895 TAGCAGAAGCAGAAAGTGCTATACTAGAGAGTCTGAGTAG : CCAAGCCCGTGCTGTTATTG - Q K Q K V L Y - R V - V : A K P V L L L S R S R K C Y T R E S E - : P S P C C Y C V A E A E S A I L E S L S S : Q A R A V I . . . . . . 70754 CAACCTTGGGAGGGAAGAAAGGCGCTGCTGGAAGAGTGAACCAATGGAGGCATCTTTTTG Q P W E G R K A L L E E - T N G G I F L N L G R E E R R C W K S E P M E A S F C A T L G G K K G A A G R V N Q W R H L F . . . . : . . 70694 CTGGATTCACAGTCTGGCTTTCCCTTTCTCAAGCTACAG : ATGAAGAATCTGCAAAAGAGG L D S Q S G F P F L K L Q : M K N L Q K R W I H S L A F P F S S Y R : - R I C K R G A G F T V W L S L S Q A T : D E E S A K E . . . . . . 69638 AGGCAAAAAGGAATATGCAAGATAGTGGTCGTGGTTACTCTAACGCGGAAGTGGTAGTCA R Q K G I C K I V V V V T L T R K W - S G K K E Y A R - W S W L L - R G S G S Q E A K R N M Q D S G R G Y S N A E V V V . . . . . . 69578 AGCTTGGAGGTTGGGATCCTAACTATTCAAAAGCAGTAGCTCAGGCTGTGCTTAGTGCCC S L E V G I L T I Q K Q - L R L C L V P A W R L G S - L F K S S S S G C A - C P K L G G W D P N Y S K A V A Q A V L S A . . . . : . . 69518 TTAAGCGCTTAATATTGGCAGATAAAGACCTTCCAG : GGAAAAAGAGTTTATACATAAGGT L S A - Y W Q I K T F Q : G K R V Y T - G - A L N I G R - R P S R : E K E F I H K V L K R L I L A D K D L P : G K K S L Y I R . . . . . . 69303 TGGGCTGCCGAGGTGATTGGCCAGACATCAAACCCCCAGGCTGGGATCCATCAACGAGCC W A A E V I G Q T S N P Q A G I H Q R A G L P R - L A R H Q T P R L G S I N E P L G C R G D W P D I K P P G W D P S T S . . . . . . 69243 TTGATGCATCTTCTCCGCGGTCATAACTCATAGCAGAATCACAGTATATGTATCTAAATG L M H L L R G H N S - Q N H S I C I - M - C I F S A V I T H S R I T V Y V S K - L D A S S P R S - L I A E S Q Y M Y L N . . . . . . 69183 AAGCTATTTTTCTCTACCCTTAGGCTCTTGTATCAATGTATCAAAATTAAAAAACATTCT K L F F S T L R L L Y Q C I K I K K H S S Y F S L P L G S C I N V S K L K N I L E A I F L Y P - A L V S M Y Q N - K T F . . . . . . 69123 TCTTGAGGATATCAAGTTGGATATTCTCAACATGATCTTTCTATATTAAGGGAAAGAAAA S - G Y Q V G Y S Q H D L S I L R E R K L E D I K L D I L N M I F L Y - G K E K F L R I S S W I F S T - S F Y I K G K K . . . . . . 69063 GACTAAGGTCCTGGCGTGTATTAATTGTCCAGAAAGTTGCCATTGAGCCCCGAAGGCCAT D - G P G V Y - L S R K L P L S P E G H T K V L A C I N C P E S C H - A P K A I R L R S W R V L I V Q K V A I E P R R P . . . . . . 69003 CTGGTTAGTCAGAATTTTTTTATGGAAGATGGTCAATTTTGTATGCTGTGAATAATTGCC L V S Q N F F M E D G Q F C M L - I I A W L V R I F L W K M V N F V C C E - L P S G - S E F F Y G R W S I L Y A V N N C . . . . . . 68943 ACAAATGTTGCTTATATTCATTCTTTATTCTAATACAGTAACACCTTTTTCATTGTTGTG T N V A Y I H S L F - Y S N T F F I V V Q M L L I F I L Y S N T V T P F S L L - H K C C L Y S F F I L I Q - H L F H C C . 68883 ACT T D Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-15_AGS-1_PPS_1 (73233 72988,72039 71852,71781 71587,71258 71197,70922 70856,70774 70656,69659 69483,69327 69218) (frame '0'; 1161 bp, 387 residues) 1 NMASSSSSSS SSVALSFLYQ NPIKASLSIP KALSPYSKLT FPSIATFYSA IPRFDYSNFR 61 KINPCLHCSN LPTASTNNTH YEFSDGSSEV ELRLELGQGD VTPKDIYVDA NESSLAIRVQ 121 QSGIVRTLME TSTLYEKIKP AETIWYIDED QLVISLKKQN SELKWPDIVE SWESLSAGIT 181 QLLRGTSIYL VGESTEINQR IARELAVGLG YTPLCTKELL ETYAKQSMET WVNEEGSDAV 241 AEAESAILES LSSQARAVIA TLGGKKGAAG RVNQWRHLFA GFTVWLSLSQ ATDEESAKEE 301 AKRNMQDSGR GYSNAEVVVK LGGWDPNYSK AVAQAVLSAL KRLILADKDL PGKKSLYIRL 361 GCRGDWPDIK PPGWDPSTSL DASSPRS- AGS-2 (74335 73863,73830 73489,73456 73427,73249 73228,71167 71139,70834 70808) SCR (e 0.792 d 0.053 a 0.000,e 0.766 d 0.000 a 0.513,e 0.667 d 0.000 a 0.750,e 0.727 d 0.382 a 0.292,e 0.655 d 0.000 a 0.000,e 0.704) Exon 1 74335 73863 ( 473 n); score: 0.792 Intron 1 73862 73831 ( 32 n); Pd: 0.053 Pa: 0.000 Exon 2 73830 73489 ( 342 n); score: 0.766 Intron 2 73488 73457 ( 32 n); Pd: 0.000 Pa: 0.513 Exon 3 73456 73427 ( 30 n); score: 0.667 Intron 3 73426 73250 ( 177 n); Pd: 0.000 Pa: 0.750 Exon 4 73249 73228 ( 22 n); score: 0.727 Intron 4 73227 71168 (2060 n); Pd: 0.382 Pa: 0.292 Exon 5 71167 71139 ( 29 n); score: 0.655 Intron 5 71138 70835 ( 304 n); Pd: 0.000 Pa: 0.000 Exon 6 70834 70808 ( 27 n); score: 0.704 PGS (74335 73863,73830 73489,73456 73427,73249 73228,71167 71139,70834 70808) SGN-U315404+ 3-phase translation of AGS-2 (-strand): . . . . . . 74335 CATAAAATGAAGGGCAATTTTCACATATAACAAACAAAAATATTATATTTATATGTTATA H K M K G N F H I - Q T K I L Y L Y V I I K - R A I F T Y N K Q K Y Y I Y M L - - N E G Q F S H I T N K N I I F I C Y . . . . . . 74275 ACAAAGTTTGCATAATTGCACTCTATAGCAAACATATAAATGTATAATTCGCACAATTGT T K F A - L H S I A N I - M Y N S H N C Q S L H N C T L - Q T Y K C I I R T I V N K V C I I A L Y S K H I N V - F A Q L . . . . . . 74215 ATAATTCGCTGGCCCAAATTATATAATTCGCTGGTCTCACTATACATATACAATTGTATG I I R W P K L Y N S L V S L Y I Y N C M - F A G P N Y I I R W S H Y T Y T I V - Y N S L A Q I I - F A G L T I H I Q L Y . . . . . . 74155 ATTTGCTGGCTTATTTCACTGCAATTGTATAATGCACAATTGTATAATTTACTGACCTAT I C W L I S L Q L Y N A Q L Y N L L T Y F A G L F H C N C I M H N C I I Y - P I D L L A Y F T A I V - C T I V - F T D L . . . . . . 74095 TTCGCTGCAGTATTTATATAAAATTTGTTTCGCATACAATTGAATCGAAGTAAAATGTTT F A A V F I - N L F R I Q L N R S K M F S L Q Y L Y K I C F A Y N - I E V K C L F R C S I Y I K F V S H T I E S K - N V . . . . . . 74035 GTATATTGTATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATAC V Y C I I I S V - E E D I C F S L A L Y Y I V - L - V Y R K K I Y V F L S L Y T C I L Y N Y K C I G R R Y M F F S R F I . . . . . . 73975 AAAAACAGAAACACAATTTATACACTTTTGTTATATAAAGCAAGAGAAAATTGTATTTCA K N R N T I Y T L L L Y K A R E N C I S K T E T Q F I H F C Y I K Q E K I V F H Q K Q K H N L Y T F V I - S K R K L Y F . . . . . . : 73915 CTGCAATTGTATAATTCACAATTGTATTCGCTGGCCTTTTCGCTGCAGTATTT : GAAGTAA L Q L Y N S Q L Y S L A F S L Q Y L : K - C N C I I H N C I R W P F R C S I : - S K T A I V - F T I V F A G L F A A V F : E V . . . . . . 73823 AATATTTGTAAATTGTATAATTAAGTGCATTGCACAAAAATATATGTTTTTGCATGTGTA N I C K L Y N - V H C T K I Y V F A C V I F V N C I I K C I A Q K Y M F L H V Y K Y L - I V - L S A L H K N I C F C M C . . . . . . 73763 TATACAATTTTTTCTCGCTTTATACAAAACAGAAACACAATTTATAGACTTCTGTTGTAT Y T I F S R F I Q N R N T I Y R L L L Y I Q F F L A L Y K T E T Q F I D F C C I I Y N F F S L Y T K Q K H N L - T S V V . . . . . . 73703 AAAGCGAGAGAGGCGGGTAGAGGGAGAGTGGCGAGCGAGAATAGTAGAATGGCCAGCAAG K A R E A G R G R V A S E N S R M A S K K R E R R V E G E W R A R I V E W P A R - S E R G G - R E S G E R E - - N G Q Q . . . . . . 73643 AGTTTTGGGAGAGAGGTGACTGGCAAACTTTGACAAACGTTTGCTATGAGACATAATTAA S F G R E V T G K L - Q T F A M R H N - V L G E R - L A N F D K R L L - D I I K E F W E R G D W Q T L T N V C Y E T - L . . . . . . 73583 ATCAAACAGTAGTTATTTCATTTATTTTAGGTTATTAATTTACTATTATATACAATTATT I K Q - L F H L F - V I N L L L Y T I I S N S S Y F I Y F R L L I Y Y Y I Q L F N Q T V V I S F I L G Y - F T I I Y N Y . . . . : . . 73523 TCTAAAATAAATATTTCAAATTCTTAAAAATAAAA : AGATGGAGAATAATATTACATGTAA S K I N I S N S - K - K : D G E - Y Y M - L K - I F Q I L K N K : K M E N N I T C K F - N K Y F K F L K I K : R W R I I L H V . : . . : . . . : 73431 AGTAC : AAGAAACAGAGAAGCAAACATG : AGAAGATAATTATTGTTAAACAATAAGTT : TCTT S T : R N R E A N M : R R - L L L N N K F : L V : Q E T E K Q T - : E D N Y C - T I S : F L K Y : K K Q R S K H : E K I I I V K Q - V : S . . . 70830 ACTCATTTCACTTGGAACTGGAA T H F T W N W L I S L G T G Y S F H L E L E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1-_PGL-15_AGS-2_PPS_1 (73828 73625) (frame '2'; 201 bp, 67 residues) 1 SKIFVNCIIK CIAQKYMFLH VYIQFFLALY KTETQFIDFC CIKRERRVEG EWRARIVEWP 61 ARVLGER- AGS-3 (74319 74224,74175 74097) SCR (e 0.833 d 0.000 a 0.000,e 0.899) Exon 1 74319 74224 ( 96 n); score: 0.833 Intron 1 74223 74176 ( 48 n); Pd: 0.000 Pa: 0.000 Exon 2 74175 74097 ( 79 n); score: 0.899 PGS (74319 74224,74175 74097) SGN-U325194+ 3-phase translation of AGS-3 (-strand): . . . . . . 74319 ATTTTCACATATAACAAACAAAAATATTATATTTATATGTTATAACAAAGTTTGCATAAT I F T Y N K Q K Y Y I Y M L - Q S L H N F S H I T N K N I I F I C Y N K V C I I F H I - Q T K I L Y L Y V I T K F A - . . . . : . . 74259 TGCACTCTATAGCAAACATATAAATGTATAATTCGC : TATACATATACAATTGTATGATTT C T L - Q T Y K C I I R : Y T Y T I V - F A L Y S K H I N V - F A : I H I Q L Y D L L H S I A N I - M Y N S : L Y I Y N C M I . . . . . . 74151 GCTGGCTTATTTCACTGCAATTGTATAATGCACAATTGTATAATTTACTGACCTA A G L F H C N C I M H N C I I Y - P L A Y F T A I V - C T I V - F T D L C W L I S L Q L Y N A Q L Y N L L T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 16 (+ strand): 77277 77728 AGS-1 (77277 77728) SCR (e 1.000) Exon 1 77277 77728 ( 452 n); score: 1.000 PGS (77277 77728) SGN-U332019- 3-phase translation of AGS-1 (+strand): . . . . . . 77277 AATTTTCTCAAAAATAATCCATCTTCTAGTGTATATACATATCATATAGCTAAAAAAAAA N F L K N N P S S S V Y T Y H I A K K K I F S K I I H L L V Y I H I I - L K K K F S Q K - S I F - C I Y I S Y S - K K . . . . . . 77337 AAAACAACTAGCCAAAATAAAGAAAACCTAGAGAGCAACAAAGAGGAGAAGAAGAAAAAG K T T S Q N K E N L E S N K E E K K K K K Q L A K I K K T - R A T K R R R R K R K N N - P K - R K P R E Q Q R G E E E K . . . . . . 77397 GGGTGGAGAGAAAAAAAAAATTGAATCTAGGTATGTACTAAAATTTTTTTTTTTCAGACT G W R E K K N - I - V C T K I F F F Q T G G E K K K I E S R Y V L K F F F F R L G V E R K K K L N L G M Y - N F F F S D . . . . . . 77457 CTCGAAATTTGAACAGTGCCACGTAGAAAGAAGTAACAAGGATATATGGAACTATTCCCA L E I - T V P R R K K - Q G Y M E L F P S K F E Q C H V E R S N K D I W N Y S Q S R N L N S A T - K E V T R I Y G T I P . . . . . . 77517 GCACAACCAGACTTATCCCTAAAAATTAGCCCACCAAACATCAAACCTTCATCATCAACA A Q P D L S L K I S P P N I K P S S S T H N Q T Y P - K L A H Q T S N L H H Q H S T T R L I P K N - P T K H Q T F I I N . . . . . . 77577 TGGAAGAGGAAAATTACAAGTGAAGATGATATTCATATGGATTTAGGGTTTTGTAAAAGA W K R K I T S E D D I H M D L G F C K R G R G K L Q V K M I F I W I - G F V K E M E E E N Y K - R - Y S Y G F R V L - K . . . . . . 77637 GCTCATGTGGTGGAATCAACAAATCCTATTAACACTTCTTCTTCTTCTTGTTTTGACCTT A H V V E S T N P I N T S S S S C F D L L M W W N Q Q I L L T L L L L L V L T F S S C G G I N K S Y - H F F F F L F - P . . . . 77697 TCTTTATCCAATAATCCAACTAAACCTAACCC S L S N N P T K P N L Y P I I Q L N L T F F I Q - S N - T - P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0320P23.1+_PGL-16_AGS-1_PPS_1 (77493 77726) (frame '1'; 234 bp, 78 residues) 1 QGYMELFPAQ PDLSLKISPP NIKPSSSTWK RKITSEDDIH MDLGFCKRAH VVESTNPINT 61 SSSSCFDLSL SNNPTKPN 3-phase translation of AGS-1 (-strand): . . . . . . 77728 GGGTTAGGTTTAGTTGGATTATTGGATAAAGAAAGGTCAAAACAAGAAGAAGAAGAAGTG G L G L V G L L D K E R S K Q E E E E V G - V - L D Y W I K K G Q N K K K K K C V R F S W I I G - R K V K T R R R R S . . . . . . 77668 TTAATAGGATTTGTTGATTCCACCACATGAGCTCTTTTACAAAACCCTAAATCCATATGA L I G F V D S T T - A L L Q N P K S I - - - D L L I P P H E L F Y K T L N P Y E V N R I C - F H H M S S F T K P - I H M . . . . . . 77608 ATATCATCTTCACTTGTAATTTTCCTCTTCCATGTTGATGATGAAGGTTTGATGTTTGGT I S S S L V I F L F H V D D E G L M F G Y H L H L - F S S S M L M M K V - C L V N I I F T C N F P L P C - - - R F D V W . . . . . . 77548 GGGCTAATTTTTAGGGATAAGTCTGGTTGTGCTGGGAATAGTTCCATATATCCTTGTTAC G L I F R D K S G C A G N S S I Y P C Y G - F L G I S L V V L G I V P Y I L V T W A N F - G - V W L C W E - F H I S L L . . . . . . 77488 TTCTTTCTACGTGGCACTGTTCAAATTTCGAGAGTCTGAAAAAAAAAAATTTTAGTACAT F F L R G T V Q I S R V - K K K I L V H S F Y V A L F K F R E S E K K K F - Y I L L S T W H C S N F E S L K K K N F S T . . . . . . 77428 ACCTAGATTCAATTTTTTTTTTCTCTCCACCCCTTTTTCTTCTTCTCCTCTTTGTTGCTC T - I Q F F F S L H P F F F F S S L L L P R F N F F F L S T P F S S S P L C C S Y L D S I F F F S P P L F L L L L F V A . . . . . . 77368 TCTAGGTTTTCTTTATTTTGGCTAGTTGTTTTTTTTTTTTTAGCTATATGATATGTATAT S R F S L F W L V V F F F L A I - Y V Y L G F L Y F G - L F F F F - L Y D M Y I L - V F F I L A S C F F F F S Y M I C I . . . . 77308 ACACTAGAAGATGGATTATTTTTGAGAAAATT T L E D G L F L R K H - K M D Y F - E N Y T R R W I I F E K I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (+ strand): 80317 80955 AGS-1 (80317 80359,80502 80955) SCR (e 1.000 d 0.996 a 0.989,e 0.998) Exon 1 80317 80359 ( 43 n); score: 1.000 Intron 1 80360 80501 ( 142 n); Pd: 0.996 Pa: 0.989 Exon 2 80502 80955 ( 454 n); score: 0.998 PGS (80317 80359,80502 80955) SGN-U344884+ 3-phase translation of AGS-1 (+strand): . . . . . : . 80317 ATGTATCGGACTGTAAAGACAACTGATAGATCAGCTTCTTCAG : GCCAATCTGAAGTATTC M Y R T V K T T D R S A S S : G Q S E V F C I G L - R Q L I D Q L L Q : A N L K Y S V S D C K D N - - I S F F R : P I - S I . . . . . . 80519 GACAATTTGTCATCTGGAGATACATCAGAGGAATTGATGGTTGATGAATATTTTGATCCA D N L S S G D T S E E L M V D E Y F D P T I C H L E I H Q R N - W L M N I L I Q R Q F V I W R Y I R G I D G - - I F - S . . . . . . 80579 AAGTCTAAATTGATATAATAGATGAATTTAGTTGACACTCAGAGACTCTAAATCCTGCAT K S K L I - - M N L V D T Q R L - I L H S L N - Y N R - I - L T L R D S K S C I K V - I D I I D E F S - H S E T L N P A . . . . . . 80639 CTGCCTCTGATCGAAAATGAAGAATGTTCAAGAAAGTTTGTTCAACAAGATGAAAGGAAT L P L I E N E E C S R K F V Q Q D E R N C L - S K M K N V Q E S L F N K M K G I S A S D R K - R M F K K V C S T R - K E . . . . . . 80699 ATTCATGGTGAACTTTTATATGCTATTATAAATCTTCATGGTGAAATTTCATATGCTATT I H G E L L Y A I I N L H G E I S Y A I F M V N F Y M L L - I F M V K F H M L L Y S W - T F I C Y Y K S S W - N F I C Y . . . . . . 80759 ATAAAAAATTATTCCCAAAAAAATGAATTTGTATTTCTTTTATAGCCAAAAGGGTCTTAG I K N Y S Q K N E F V F L L - P K G S - - K I I P K K M N L Y F F Y S Q K G L R Y K K L F P K K - I C I S F I A K R V L . . . . . . 80819 GGTGAATGCTAAACCCTAGTAAATAATGATGGACCTATATTTGTGGAAATTAGTTTTTGT G E C - T L V N N D G P I F V E I S F C V N A K P - - I M M D L Y L W K L V F V G - M L N P S K - - W T Y I C G N - F L . . . . . . 80879 GCCAAAAGCAAAGAGGGCACTAGTTGTTCGACAGTGTAAAGAATTTTTATAATATTGTGA A K S K E G T S C S T V - R I F I I L - P K A K R A L V V R Q C K E F L - Y C D C Q K Q R G H - L F D S V K N F Y N I V . . 80939 TTGAAATGTTATTTAAA L K C Y L - N V I - I E M L F K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 18 (+ strand): 88106 88427 AGS-1 (88106 88427) SCR (e 0.896) Exon 1 88106 88427 ( 322 n); score: 0.896 PGS (88106 88403) SGN-U328267+ PGS (88110 88427) SGN-U328267- 3-phase translation of AGS-1 (+strand): . . . . . . 88106 TAAGTACCCCCTCAACCTATGCCCGAAATCCCAAAGACACACTTATACTATACTAAGGTC - V P P Q P M P E I P K T H L Y Y T K V K Y P L N L C P K S Q R H T Y T I L R S S T P S T Y A R N P K D T L I L Y - G . . . . . . 88166 CTATTACCCCCCTGAACTTATTTTATAAGTAATTTTTTACCCCTTTTTAGCCTACGTGGC L L P P - T Y F I S N F L P L F S L R G Y Y P P E L I L - V I F Y P F L A Y V A P I T P L N L F Y K - F F T P F - P T W . . . . . . 88226 ACTAGTTTGAAAAAAAAGTCAACCTTTGTTGGGCCCACAAAATAGTGCCACGTAGGTCGA T S L K K K S T F V G P T K - C H V G R L V - K K S Q P L L G P Q N S A T - V E H - F E K K V N L C W A H K I V P R R S . . . . . . 88286 AAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGTAATAGGACCTTAGTATAGTA K G V K N Y - - N K F R G - - D L S I V K G - K I I N K I S S G G N R T L V - Y K R G K K L L I K - V Q G V I G P - Y S . . . . . . 88346 TAAGTGTGTCTCTGAGATTTCGGGCATAGGTTAAAGAAGTACTTGGACATTATCCCTTAA - V C L - D F G H R L K K Y L D I I P - K C V S E I S G I G - R S T W T L S L K I S V S L R F R A - V K E V L G H Y P L . . . 88406 AATTAAGTAAATATACGAAAAT N - V N I R K I K - I Y E N K L S K Y T K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 88427 ATTTTCGTATATTTACTTAATTTTAAGGGATAATGTCCAAGTACTTCTTTAACCTATGCC I F V Y L L N F K G - C P S T S L T Y A F S Y I Y L I L R D N V Q V L L - P M P F R I F T - F - G I M S K Y F F N L C . . . . . . 88367 CGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTT R N L R D T L I L Y - G P I T P - T Y F E I S E T H L Y Y T K V L L P P E L I L P K S Q R H T Y T I L R S Y Y P L N L F . . . . . . 88307 ATTAATAATTTTTTACCCCTTTTCGACCTACGTGGCACTATTTTGTGGGCCCAACAAAGG I N N F L P L F D L R G T I L W A Q Q R L I I F Y P F S T Y V A L F C G P N K G Y - - F F T P F R P T W H Y F V G P T K . . . . . . 88247 TTGACTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAAAAAATTACTTATAA L T F F S N - C H V G - K G V K N Y L - - L F F Q T S A T - A K K G - K I T Y K V D F F F K L V P R R L K R G K K L L I . . . . . . 88187 AATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTTTGGGATTTCGG N K F R G V I G P - Y S I S V S L G F R I S S G G - - D L S I V - V C L W D F G K - V Q G G N R T L V - Y K C V F G I S . . . 88127 GCATAGGTTGAGGGGGTACTTA A - V E G V L H R L R G Y L G I G - G G T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:37:11 2006