GeneSeqer. Version of March 12, 2006. Date run: Thu Aug 24 08:02:59 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-HEbgs/C08SLe0084H03/C08SLe0084H03.seq.screen ________________________________________________________________________________ Sequence 1: C08SLe0084H03.1, from 1 to 116000, both strands analyzed. ... started at: Thu Aug 24 08:28:25 2006 EST library file: /tmp/cxgn-bacpublish-resources-6SgjC2/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 8 ... matches indexed, elapsed seconds = 8 HitsTableSize = 143 EST library file: /tmp/cxgn-bacpublish-resources-6SgjC2/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 120 ******************************************************************************** EST sequence 1 +strand 532 n (File: SGN-E324968+) 1 AAGTAGAGGA CTGTTATGAA AGAGAAGGAG GAAGAGAAGA ATCAACTGAT AACAGACGAT 61 GACAGAGATG GAGAAGAAGA ACAACAACAA AGAGGGGAAT GTGGTGATCA CGAAAATGCG 121 GAATCTCAAA CATCGTCGTC TTTAAATGGC AAAGAAATAC TGAAAGCAAT CGAAGTTGTG 181 GAGAGAGATT CTATGGCGAT CGCCCATAGC TACACTTCAC TTTTTGCTTC TCTTCGATCA 241 ACTTTATCAG AGGTTACTAG TACTTCTGTT GATCACATGA TCTGCTTTGG TGATGCAGCA 301 GGACGAGTTC AAGAATGTGC ACTTGATGCA GCAACTAAAG GAAACCGTTA CATAAACTCT 361 TGCTTAAGAT TGAACGAGGA AATGAAAGGA ATTGATAATC TTGCAACCCA GCTGAAAATC 421 ATCCGGAGAA ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG TTTCCCATGA 481 GTGTGGATCT GTCTTGATGG ACGATGTCAA CTAGGTGAGC TGCACATATT TT Predicted gene structure (within gDNA segment 1017 to 6424): Exon 1 1873 2102 ( 230 n); cDNA 23 252 ( 230 n); score: 1.000 Intron 1 2103 3598 (1496 n); Pd: 0.981 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 3599 3665 ( 67 n); cDNA 253 319 ( 67 n); score: 1.000 Intron 2 3666 4968 (1303 n); Pd: 0.967 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 4969 5017 ( 49 n); cDNA 320 368 ( 49 n); score: 1.000 Intron 3 5018 5339 ( 322 n); Pd: 0.969 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 4 5340 5384 ( 45 n); cDNA 369 413 ( 45 n); score: 1.000 Intron 4 5385 5695 ( 311 n); Pd: 0.990 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 5696 5814 ( 119 n); cDNA 414 532 ( 119 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E324968+ 1.000 510 0.959 C PGS_C08SLe0084H03.1+_SGN-E324968+ (1873 2102,3599 3665,4969 5017,5340 5384,5696 5814) Alignment (genomic DNA sequence = upper lines): AGAAGGAGGA AGAGAAGAAT CAACTGATAA CAGACGATGA CAGAGATGGA GAAGAAGAAC 1932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGAGGA AGAGAAGAAT CAACTGATAA CAGACGATGA CAGAGATGGA GAAGAAGAAC 82 AACAACAAAG AGGGGAATGT GGTGATCACG AAAATGCGGA ATCTCAAACA TCGTCGTCTT 1992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACAAAG AGGGGAATGT GGTGATCACG AAAATGCGGA ATCTCAAACA TCGTCGTCTT 142 TAAATGGCAA AGAAATACTG AAAGCAATCG AAGTTGTGGA GAGAGATTCT ATGGCGATCG 2052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGGCAA AGAAATACTG AAAGCAATCG AAGTTGTGGA GAGAGATTCT ATGGCGATCG 202 CCCATAGCTA CACTTCACTT TTTGCTTCTC TTCGATCAAC TTTATCAGAG GTTTCTTCTT 2112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATAGCTA CACTTCACTT TTTGCTTCTC TTCGATCAAC TTTATCAGAG .......... 252 TCTGTCCTTA ATTCTTGCAT TTCCTCATAA TCTTAGTACT CGGTGGTGTT GAGGCCACTG 2172 .......... .......... .......... .......... .......... .......... 252 CTGCAAATAG TGGCGTAGCT TTGAGATAGT GTTATCTGAA AGTAATTATC TTTAGTCCTT 2232 .......... .......... .......... .......... .......... .......... 252 CATCATGTTC AGTGTTTGGC ACGTTTCTTT TTAATTTGGT TACTGATAAA AAGAGAGTCT 2292 .......... .......... .......... .......... .......... .......... 252 TTTTTGTTTT TTTAATTTGG TTTGAGATGA TTGTATGTCA GTGGAGGGAT GATTGTGAGA 2352 .......... .......... .......... .......... .......... .......... 252 TTTAGAGAAT CCTCAATTTA TAATGAACTG GAGTGGATGT TGAGTATAGA TATAGCTTAT 2412 .......... .......... .......... .......... .......... .......... 252 CTTAGTTAGT TTGGGAATTA AGCGAAGAAG TAGTAGTTGG ATAGAAAAGC ATGTTTAAGG 2472 .......... .......... .......... .......... .......... .......... 252 TGATCAACGA GCTGCATGGT GATCTAAGCT CTTTGCCTGC TTTTTGATTG TGCATTTTGC 2532 .......... .......... .......... .......... .......... .......... 252 TTGTAAAATT TCTGAACTGG ATCAGTAGTT GGATAGAAAA GTGTTCTTAT GATGATCAAC 2592 .......... .......... .......... .......... .......... .......... 252 GAGGTGCATG GTGATTTAGG CTCTTCGCCT GCTGTTTGAT TGTATATTTT GCTTGTAAAA 2652 .......... .......... .......... .......... .......... .......... 252 ATGGTAAACT GGAATGAGTA GTTGGATAGA ATATGCGTAT GATGATCAGC GAGCTACATG 2712 .......... .......... .......... .......... .......... .......... 252 GTGATCTAGC CTCTTTGCCT GCTGTTTGAT TGTGCATTTT GCTGGTAAAA TTTCTAAACT 2772 .......... .......... .......... .......... .......... .......... 252 GGAATCAGTT TTCATCTGGG TAGATAGCAA GGTTTTTTCA ATTCATAGCA TTCTGAATTC 2832 .......... .......... .......... .......... .......... .......... 252 TCTGATATGA TCTCTTCTAA GCATCACATT TGACACTTTT CACTTGTAGT TTAAACGGTT 2892 .......... .......... .......... .......... .......... .......... 252 TGGTACGTTG TTGCTTATTC TGCGTAGAGT TATACTTTGT TATCTATCTT CTCTTGGGAT 2952 .......... .......... .......... .......... .......... .......... 252 ATTGCACTTG GGTTTCAGGT CATGTGACTG TCATGTTTCT GATGAAGATT TAGGAATGTT 3012 .......... .......... .......... .......... .......... .......... 252 GCTCCAGTGG CACTTGTATG GTACTTTGGA GGAAAGGAAA GACCACTTGA AGGGGTGGAA 3072 .......... .......... .......... .......... .......... .......... 252 ATTGGAATGC AAGTTTACCA ATTAGGACAT GTCGTTGTTT TTGTTTAATT TTTTGTCTGC 3132 .......... .......... .......... .......... .......... .......... 252 CCGGAGAGAT TACTGTCTGT ATAAATGATT AAGTCGCTTT CAGAGAGAAC CACTAGTTCT 3192 .......... .......... .......... .......... .......... .......... 252 CTTCTTTTTG ATAGATTGCT TGTATACGGA GTTCTTCTCC CACAAGATTA ATAAAATATT 3252 .......... .......... .......... .......... .......... .......... 252 ACTTTATAAT AAGAAACGAT TGGATGAGAT GTCAATCTTA TTGGGAAGAA TTAGTTCGAT 3312 .......... .......... .......... .......... .......... .......... 252 TTTACCTATT TATCCTTAGT ATGGCATGTG ACTGTCATAT GACAATCTTT CAGTGACTTT 3372 .......... .......... .......... .......... .......... .......... 252 TGCCGAGAAG TTATCCGATG ACTAAGTGAG ACTTTTGGGT GAATCTAGAT GGCGAAATGC 3432 .......... .......... .......... .......... .......... .......... 252 AATTCTAGCC ATAGATGGCA TAGTGCCATG TAATTATGAA CCACAAAGTG CCAAAAAGCA 3492 .......... .......... .......... .......... .......... .......... 252 TTACAATTTA GTGGACTTCA TGCATTTGAC ACCTGATATT AGAACTTCTT TTTCTTTTCA 3552 .......... .......... .......... .......... .......... .......... 252 TGTGTGTGTT CTGTCCATGT TTAAAGGAGA TAACATGATT TTGCAGGTTA CTAGTACTTC 3612 |||| |||||||||| .......... .......... .......... .......... ......GTTA CTAGTACTTC 266 TGTTGATCAC ATGATCTGCT TTGGTGATGC AGCAGGACGA GTTCAAGAAT GTGGTATATA 3672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGTTGATCAC ATGATCTGCT TTGGTGATGC AGCAGGACGA GTTCAAGAAT GTG....... 319 CTTTTACGGT TTTACCTCTT CATCTTCAGT TGTTGATGTC CTTACATCAA TAGTTTTTCT 3732 .......... .......... .......... .......... .......... .......... 319 TTTATTCTGC TTGTTGTTCG TTCATTATTT ATTCAACAGA CTAAGAATGA CTGTCTTTAA 3792 .......... .......... .......... .......... .......... .......... 319 GTTCACGCTA GATCCCACAA ATGTTGTTTT GAGGTAAGAT AAACACAAGA TCTAACATAG 3852 .......... .......... .......... .......... .......... .......... 319 TATTGCGCAC TTATCTATCA GTTCTCTTGG AAACATGCAC CTCATCAATA TTCTAAAAGA 3912 .......... .......... .......... .......... .......... .......... 319 AAACCTTCTT AGGTTCATTA AGAATTTAAC TGCCATAAGT TGGTACCATG GATGTACCAG 3972 .......... .......... .......... .......... .......... .......... 319 CTTTATTTGT AGGCAAAGTG GAAGAATTGA TTTTTCCGCT TCTCTCTTTG TTGCTTTAGT 4032 .......... .......... .......... .......... .......... .......... 319 AATCCTTGTT CTAGAAGATG AGGACACTTG GTTTTGCCAG TGATCATTAA TTCAAACTTC 4092 .......... .......... .......... .......... .......... .......... 319 ATCCTAGATG TGACTGCAAG AGGTTTATCT CTGTTCTGCT AACCCCAAAT GCATTATGCA 4152 .......... .......... .......... .......... .......... .......... 319 TGAGACGCCT GGATTTCTCT TGACCAATTT TCTGCATAGT TATCTTTTTT TGGATGTCTC 4212 .......... .......... .......... .......... .......... .......... 319 CTTATTTACC ACTAGGACAA ACTAGTTAGG GTGTCATCCT AAAACTTGAA TTATGGAGAA 4272 .......... .......... .......... .......... .......... .......... 319 TTATTCTGGA GAGTAAGAGA TTTAGGATAG GTAGAAGTAA CAGAATGTAA GGAAGTCTAT 4332 .......... .......... .......... .......... .......... .......... 319 TGGGAAATTG GCGAACTTTT CCCAGCTTCT ATTCTTTGAT GCCTGTGGTA GAAAGAAATA 4392 .......... .......... .......... .......... .......... .......... 319 GTGGATGCTT TGAAGGAAAC CCCTCTCCTA TCCATATTCT GGAATACAGA TTGCTCACAA 4452 .......... .......... .......... .......... .......... .......... 319 ATCTGGAGTA ACCACCACCA GTGCAAATAA TTTTGTTAGC TCCCTAGGAG GTTTATAGAA 4512 .......... .......... .......... .......... .......... .......... 319 GGTCCATTGT TTCCGGGAGC TAACGTTTCT GCTCCAGCTT GTAATTTTTA GAATCTACTG 4572 .......... .......... .......... .......... .......... .......... 319 GATCTTGTTA ATGAAATTTT ACTTTACCAG ATTAAAAAGA AAAGACACAA GTATAAGTAA 4632 .......... .......... .......... .......... .......... .......... 319 GATTAGAGTA TATGCACAGG AAGTTAAGCC AAATAAGGAG TGAAGTCGAA ACGAGATTAG 4692 .......... .......... .......... .......... .......... .......... 319 ATTCAGATAA CTAGACTTGA TTTTCTAGGG AAAAAAGTTT TATTTATAAA AATGTGATCA 4752 .......... .......... .......... .......... .......... .......... 319 TAATTAAAAT AAGAAGTTTG ATAAGTGTGT TATGTAATAG GAGGATACTT ACCAAAGTGA 4812 .......... .......... .......... .......... .......... .......... 319 AAGACAAGTT TTATGTGATT AAATTCCAGA TCTTTCCTTT CCTCATTTTA TTTTCTTAAA 4872 .......... .......... .......... .......... .......... .......... 319 TGCATTCACA TTTCATTAAT ACCTTATTAA CATGTTTTAA GTGATGTACT AAAGTTGAGC 4932 .......... .......... .......... .......... .......... .......... 319 TGCACTAGTA TTAATGTTTG GCTGTTTATC TTGCAGCACT TGATGCAGCA ACTAAAGGAA 4992 |||| |||||||||| |||||||||| .......... .......... .......... ......CACT TGATGCAGCA ACTAAAGGAA 343 ACCGTTACAT AAACTCTTGC TTAAGGTAGT ATTTTTTGTT ATTCTTTAGT CAAGTCCCTG 5052 |||||||||| |||||||||| ||||| ACCGTTACAT AAACTCTTGC TTAAG..... .......... .......... .......... 368 TAGTACCTTC CTGAAAAAAA AAATTATCAG TCTCACCCTA AGGGGTAGTT GGGAGGAAGC 5112 .......... .......... .......... .......... .......... .......... 368 ACCAAGTTAA TGTCCTTATC TTTAGATGGT ATAACATCTT AGATGTTTAT GGTATTCATG 5172 .......... .......... .......... .......... .......... .......... 368 TACGTTTGGT TTTGGTAAAG CAATTCGTCA AGCCTCTAAA TAGGGAACAT ATAACTTGCG 5232 .......... .......... .......... .......... .......... .......... 368 TGTTTCGTAT CAGGTCTATT TTTGCATCAA ATAGTATAAT TACATCCTTC CCACTCCAAA 5292 .......... .......... .......... .......... .......... .......... 368 AATCTACTAT TCTGGCAAAT CTTTATAAGC TAACTCTCTC TTCGCAGATT GAACGAGGAA 5352 ||| |||||||||| .......... .......... .......... .......... .......ATT GAACGAGGAA 381 ATGAAAGGAA TTGATAATCT TGCAACCCAG CTGTATCCTT TCCATGTGAT TATGGTTTGA 5412 |||||||||| |||||||||| |||||||||| || ATGAAAGGAA TTGATAATCT TGCAACCCAG CT........ .......... .......... 413 TGTTAGACAT TATTTCTTCT ACAAGTCTCC AATTCACGTC CACCAATTCT TTGTTTAAAG 5472 .......... .......... .......... .......... .......... .......... 413 TTTGACTAAA GGATGCAATG GTGATTCTTG TCCTTGCAGT TGGCAATTAA CCAGTGGACT 5532 .......... .......... .......... .......... .......... .......... 413 GACAGGTTTC ATTTCATTGT TTTCCTTTTT TATATCAATA GTTTTTCGTT TATTGTCTTG 5592 .......... .......... .......... .......... .......... .......... 413 AACAAGAATT CATGGGCACC TTGCTCCCTG CAATGACATA GTATGACTGT TTAGAACCAA 5652 .......... .......... .......... .......... .......... .......... 413 TCAATATATC ATGTGTTCTT TGTGACTCCT TGATACCTTG AAGGAAAATC ATCCGGAGAA 5712 ||||||| |||||||||| .......... .......... .......... .......... ...GAAAATC ATCCGGAGAA 430 ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG TTTCCCATGA GTGTGGATCT 5772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG TTTCCCATGA GTGTGGATCT 490 GTCTTGATGG ACGATGTCAA CTAGGTGAGC TGCACATATT TT 5814 |||||||||| |||||||||| |||||||||| |||||||||| || GTCTTGATGG ACGATGTCAA CTAGGTGAGC TGCACATATT TT 532 hqPGS_C08SLe0084H03.1+_SGN-E324968+ (1873 2102,3599 3665,4969 5017,5340 5384,5696 5814) ******************************************************************************** EST sequence 2 +strand 532 n (File: SGN-E324971+) 1 AAGTAGAGGA CTGTTATGAA AGAGAAGGAG GAAGAGAAGA ATCAACTGAT AACAGACGAT 61 GACAGAGATG GAGAAGAAGA ACAACAACAA AGAGGGGAAT GTGGTGATCA CGAAAATGCG 121 GAATCTCAAA CATCGTCGTC TTTAAATGGC AAAGAAATAC TGAAAGCAAT CGAAGTTGTG 181 GAGAGAGATT CTATGGCGAT CGCCCATAGC TACACTTCAC TTTTTGCTTC TCTTCGATCA 241 ACTTTATCAG AGGTTACTAG TACTTCTGTT GATCACATGA TCTGCTTTGG TGATGCAGCA 301 GGACGAGTTC AAGAATGTGC ACTTGATGCA GCAACTAAAG GAAACCGTTA CATAAACTCT 361 TGCTTAAGAT TGAACGAGGA AATGAAAGGA ATTGATAATC TTGCAACCCA GCTGAAAATC 421 ATCCGGAGAA ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG TTTCCCATGA 481 GTGTGGATCT GTCTTGATGG ACGATGTCAA CTANGTGAGC TGCACATATT TT Predicted gene structure (within gDNA segment 1017 to 6424): Exon 1 1873 2102 ( 230 n); cDNA 23 252 ( 230 n); score: 1.000 Intron 1 2103 3598 (1496 n); Pd: 0.981 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 3599 3665 ( 67 n); cDNA 253 319 ( 67 n); score: 1.000 Intron 2 3666 4968 (1303 n); Pd: 0.967 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 4969 5017 ( 49 n); cDNA 320 368 ( 49 n); score: 1.000 Intron 3 5018 5339 ( 322 n); Pd: 0.969 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 4 5340 5384 ( 45 n); cDNA 369 413 ( 45 n); score: 1.000 Intron 4 5385 5695 ( 311 n); Pd: 0.990 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 5696 5814 ( 119 n); cDNA 414 532 ( 119 n); score: 0.992 MATCH C08SLe0084H03.1+ SGN-E324971+ 0.998 510 0.959 C PGS_C08SLe0084H03.1+_SGN-E324971+ (1873 2102,3599 3665,4969 5017,5340 5384,5696 5814) Alignment (genomic DNA sequence = upper lines): AGAAGGAGGA AGAGAAGAAT CAACTGATAA CAGACGATGA CAGAGATGGA GAAGAAGAAC 1932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGAGGA AGAGAAGAAT CAACTGATAA CAGACGATGA CAGAGATGGA GAAGAAGAAC 82 AACAACAAAG AGGGGAATGT GGTGATCACG AAAATGCGGA ATCTCAAACA TCGTCGTCTT 1992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACAAAG AGGGGAATGT GGTGATCACG AAAATGCGGA ATCTCAAACA TCGTCGTCTT 142 TAAATGGCAA AGAAATACTG AAAGCAATCG AAGTTGTGGA GAGAGATTCT ATGGCGATCG 2052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGGCAA AGAAATACTG AAAGCAATCG AAGTTGTGGA GAGAGATTCT ATGGCGATCG 202 CCCATAGCTA CACTTCACTT TTTGCTTCTC TTCGATCAAC TTTATCAGAG GTTTCTTCTT 2112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATAGCTA CACTTCACTT TTTGCTTCTC TTCGATCAAC TTTATCAGAG .......... 252 TCTGTCCTTA ATTCTTGCAT TTCCTCATAA TCTTAGTACT CGGTGGTGTT GAGGCCACTG 2172 .......... .......... .......... .......... .......... .......... 252 CTGCAAATAG TGGCGTAGCT TTGAGATAGT GTTATCTGAA AGTAATTATC TTTAGTCCTT 2232 .......... .......... .......... .......... .......... .......... 252 CATCATGTTC AGTGTTTGGC ACGTTTCTTT TTAATTTGGT TACTGATAAA AAGAGAGTCT 2292 .......... .......... .......... .......... .......... .......... 252 TTTTTGTTTT TTTAATTTGG TTTGAGATGA TTGTATGTCA GTGGAGGGAT GATTGTGAGA 2352 .......... .......... .......... .......... .......... .......... 252 TTTAGAGAAT CCTCAATTTA TAATGAACTG GAGTGGATGT TGAGTATAGA TATAGCTTAT 2412 .......... .......... .......... .......... .......... .......... 252 CTTAGTTAGT TTGGGAATTA AGCGAAGAAG TAGTAGTTGG ATAGAAAAGC ATGTTTAAGG 2472 .......... .......... .......... .......... .......... .......... 252 TGATCAACGA GCTGCATGGT GATCTAAGCT CTTTGCCTGC TTTTTGATTG TGCATTTTGC 2532 .......... .......... .......... .......... .......... .......... 252 TTGTAAAATT TCTGAACTGG ATCAGTAGTT GGATAGAAAA GTGTTCTTAT GATGATCAAC 2592 .......... .......... .......... .......... .......... .......... 252 GAGGTGCATG GTGATTTAGG CTCTTCGCCT GCTGTTTGAT TGTATATTTT GCTTGTAAAA 2652 .......... .......... .......... .......... .......... .......... 252 ATGGTAAACT GGAATGAGTA GTTGGATAGA ATATGCGTAT GATGATCAGC GAGCTACATG 2712 .......... .......... .......... .......... .......... .......... 252 GTGATCTAGC CTCTTTGCCT GCTGTTTGAT TGTGCATTTT GCTGGTAAAA TTTCTAAACT 2772 .......... .......... .......... .......... .......... .......... 252 GGAATCAGTT TTCATCTGGG TAGATAGCAA GGTTTTTTCA ATTCATAGCA TTCTGAATTC 2832 .......... .......... .......... .......... .......... .......... 252 TCTGATATGA TCTCTTCTAA GCATCACATT TGACACTTTT CACTTGTAGT TTAAACGGTT 2892 .......... .......... .......... .......... .......... .......... 252 TGGTACGTTG TTGCTTATTC TGCGTAGAGT TATACTTTGT TATCTATCTT CTCTTGGGAT 2952 .......... .......... .......... .......... .......... .......... 252 ATTGCACTTG GGTTTCAGGT CATGTGACTG TCATGTTTCT GATGAAGATT TAGGAATGTT 3012 .......... .......... .......... .......... .......... .......... 252 GCTCCAGTGG CACTTGTATG GTACTTTGGA GGAAAGGAAA GACCACTTGA AGGGGTGGAA 3072 .......... .......... .......... .......... .......... .......... 252 ATTGGAATGC AAGTTTACCA ATTAGGACAT GTCGTTGTTT TTGTTTAATT TTTTGTCTGC 3132 .......... .......... .......... .......... .......... .......... 252 CCGGAGAGAT TACTGTCTGT ATAAATGATT AAGTCGCTTT CAGAGAGAAC CACTAGTTCT 3192 .......... .......... .......... .......... .......... .......... 252 CTTCTTTTTG ATAGATTGCT TGTATACGGA GTTCTTCTCC CACAAGATTA ATAAAATATT 3252 .......... .......... .......... .......... .......... .......... 252 ACTTTATAAT AAGAAACGAT TGGATGAGAT GTCAATCTTA TTGGGAAGAA TTAGTTCGAT 3312 .......... .......... .......... .......... .......... .......... 252 TTTACCTATT TATCCTTAGT ATGGCATGTG ACTGTCATAT GACAATCTTT CAGTGACTTT 3372 .......... .......... .......... .......... .......... .......... 252 TGCCGAGAAG TTATCCGATG ACTAAGTGAG ACTTTTGGGT GAATCTAGAT GGCGAAATGC 3432 .......... .......... .......... .......... .......... .......... 252 AATTCTAGCC ATAGATGGCA TAGTGCCATG TAATTATGAA CCACAAAGTG CCAAAAAGCA 3492 .......... .......... .......... .......... .......... .......... 252 TTACAATTTA GTGGACTTCA TGCATTTGAC ACCTGATATT AGAACTTCTT TTTCTTTTCA 3552 .......... .......... .......... .......... .......... .......... 252 TGTGTGTGTT CTGTCCATGT TTAAAGGAGA TAACATGATT TTGCAGGTTA CTAGTACTTC 3612 |||| |||||||||| .......... .......... .......... .......... ......GTTA CTAGTACTTC 266 TGTTGATCAC ATGATCTGCT TTGGTGATGC AGCAGGACGA GTTCAAGAAT GTGGTATATA 3672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGTTGATCAC ATGATCTGCT TTGGTGATGC AGCAGGACGA GTTCAAGAAT GTG....... 319 CTTTTACGGT TTTACCTCTT CATCTTCAGT TGTTGATGTC CTTACATCAA TAGTTTTTCT 3732 .......... .......... .......... .......... .......... .......... 319 TTTATTCTGC TTGTTGTTCG TTCATTATTT ATTCAACAGA CTAAGAATGA CTGTCTTTAA 3792 .......... .......... .......... .......... .......... .......... 319 GTTCACGCTA GATCCCACAA ATGTTGTTTT GAGGTAAGAT AAACACAAGA TCTAACATAG 3852 .......... .......... .......... .......... .......... .......... 319 TATTGCGCAC TTATCTATCA GTTCTCTTGG AAACATGCAC CTCATCAATA TTCTAAAAGA 3912 .......... .......... .......... .......... .......... .......... 319 AAACCTTCTT AGGTTCATTA AGAATTTAAC TGCCATAAGT TGGTACCATG GATGTACCAG 3972 .......... .......... .......... .......... .......... .......... 319 CTTTATTTGT AGGCAAAGTG GAAGAATTGA TTTTTCCGCT TCTCTCTTTG TTGCTTTAGT 4032 .......... .......... .......... .......... .......... .......... 319 AATCCTTGTT CTAGAAGATG AGGACACTTG GTTTTGCCAG TGATCATTAA TTCAAACTTC 4092 .......... .......... .......... .......... .......... .......... 319 ATCCTAGATG TGACTGCAAG AGGTTTATCT CTGTTCTGCT AACCCCAAAT GCATTATGCA 4152 .......... .......... .......... .......... .......... .......... 319 TGAGACGCCT GGATTTCTCT TGACCAATTT TCTGCATAGT TATCTTTTTT TGGATGTCTC 4212 .......... .......... .......... .......... .......... .......... 319 CTTATTTACC ACTAGGACAA ACTAGTTAGG GTGTCATCCT AAAACTTGAA TTATGGAGAA 4272 .......... .......... .......... .......... .......... .......... 319 TTATTCTGGA GAGTAAGAGA TTTAGGATAG GTAGAAGTAA CAGAATGTAA GGAAGTCTAT 4332 .......... .......... .......... .......... .......... .......... 319 TGGGAAATTG GCGAACTTTT CCCAGCTTCT ATTCTTTGAT GCCTGTGGTA GAAAGAAATA 4392 .......... .......... .......... .......... .......... .......... 319 GTGGATGCTT TGAAGGAAAC CCCTCTCCTA TCCATATTCT GGAATACAGA TTGCTCACAA 4452 .......... .......... .......... .......... .......... .......... 319 ATCTGGAGTA ACCACCACCA GTGCAAATAA TTTTGTTAGC TCCCTAGGAG GTTTATAGAA 4512 .......... .......... .......... .......... .......... .......... 319 GGTCCATTGT TTCCGGGAGC TAACGTTTCT GCTCCAGCTT GTAATTTTTA GAATCTACTG 4572 .......... .......... .......... .......... .......... .......... 319 GATCTTGTTA ATGAAATTTT ACTTTACCAG ATTAAAAAGA AAAGACACAA GTATAAGTAA 4632 .......... .......... .......... .......... .......... .......... 319 GATTAGAGTA TATGCACAGG AAGTTAAGCC AAATAAGGAG TGAAGTCGAA ACGAGATTAG 4692 .......... .......... .......... .......... .......... .......... 319 ATTCAGATAA CTAGACTTGA TTTTCTAGGG AAAAAAGTTT TATTTATAAA AATGTGATCA 4752 .......... .......... .......... .......... .......... .......... 319 TAATTAAAAT AAGAAGTTTG ATAAGTGTGT TATGTAATAG GAGGATACTT ACCAAAGTGA 4812 .......... .......... .......... .......... .......... .......... 319 AAGACAAGTT TTATGTGATT AAATTCCAGA TCTTTCCTTT CCTCATTTTA TTTTCTTAAA 4872 .......... .......... .......... .......... .......... .......... 319 TGCATTCACA TTTCATTAAT ACCTTATTAA CATGTTTTAA GTGATGTACT AAAGTTGAGC 4932 .......... .......... .......... .......... .......... .......... 319 TGCACTAGTA TTAATGTTTG GCTGTTTATC TTGCAGCACT TGATGCAGCA ACTAAAGGAA 4992 |||| |||||||||| |||||||||| .......... .......... .......... ......CACT TGATGCAGCA ACTAAAGGAA 343 ACCGTTACAT AAACTCTTGC TTAAGGTAGT ATTTTTTGTT ATTCTTTAGT CAAGTCCCTG 5052 |||||||||| |||||||||| ||||| ACCGTTACAT AAACTCTTGC TTAAG..... .......... .......... .......... 368 TAGTACCTTC CTGAAAAAAA AAATTATCAG TCTCACCCTA AGGGGTAGTT GGGAGGAAGC 5112 .......... .......... .......... .......... .......... .......... 368 ACCAAGTTAA TGTCCTTATC TTTAGATGGT ATAACATCTT AGATGTTTAT GGTATTCATG 5172 .......... .......... .......... .......... .......... .......... 368 TACGTTTGGT TTTGGTAAAG CAATTCGTCA AGCCTCTAAA TAGGGAACAT ATAACTTGCG 5232 .......... .......... .......... .......... .......... .......... 368 TGTTTCGTAT CAGGTCTATT TTTGCATCAA ATAGTATAAT TACATCCTTC CCACTCCAAA 5292 .......... .......... .......... .......... .......... .......... 368 AATCTACTAT TCTGGCAAAT CTTTATAAGC TAACTCTCTC TTCGCAGATT GAACGAGGAA 5352 ||| |||||||||| .......... .......... .......... .......... .......ATT GAACGAGGAA 381 ATGAAAGGAA TTGATAATCT TGCAACCCAG CTGTATCCTT TCCATGTGAT TATGGTTTGA 5412 |||||||||| |||||||||| |||||||||| || ATGAAAGGAA TTGATAATCT TGCAACCCAG CT........ .......... .......... 413 TGTTAGACAT TATTTCTTCT ACAAGTCTCC AATTCACGTC CACCAATTCT TTGTTTAAAG 5472 .......... .......... .......... .......... .......... .......... 413 TTTGACTAAA GGATGCAATG GTGATTCTTG TCCTTGCAGT TGGCAATTAA CCAGTGGACT 5532 .......... .......... .......... .......... .......... .......... 413 GACAGGTTTC ATTTCATTGT TTTCCTTTTT TATATCAATA GTTTTTCGTT TATTGTCTTG 5592 .......... .......... .......... .......... .......... .......... 413 AACAAGAATT CATGGGCACC TTGCTCCCTG CAATGACATA GTATGACTGT TTAGAACCAA 5652 .......... .......... .......... .......... .......... .......... 413 TCAATATATC ATGTGTTCTT TGTGACTCCT TGATACCTTG AAGGAAAATC ATCCGGAGAA 5712 ||||||| |||||||||| .......... .......... .......... .......... ...GAAAATC ATCCGGAGAA 430 ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG TTTCCCATGA GTGTGGATCT 5772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG TTTCCCATGA GTGTGGATCT 490 GTCTTGATGG ACGATGTCAA CTAGGTGAGC TGCACATATT TT 5814 |||||||||| |||||||||| ||| |||||| |||||||||| || GTCTTGATGG ACGATGTCAA CTANGTGAGC TGCACATATT TT 532 hqPGS_C08SLe0084H03.1+_SGN-E324971+ (1873 2102,3599 3665,4969 5017,5340 5384,5696 5814) ******************************************************************************** EST sequence 77 +strand 646 n (File: SGN-E556545+) 1 CAGAGATGGA GAAGAAGAAC AACAACAAAG AGGGGAATGT GGTGATCACG AAAATGCGGA 61 ATCTCAAACA TCGTCGTCTT TAAATGGCAA AGAAATACTG AAAGCAATCG AAGTTGTGGA 121 GAGAGATTCT ATGGCGATCG CCCATAGCTA CACTTCACTT TTTGCTTCTC TTCGATCAAC 181 TTTATCAGAG GTTACTAGTA CTTCTGTTGA TCACATGATC TGCTTTGGTG ATGCAGCAGG 241 ACGAGTTCAA GAATGTGCAC TTGATGCAGC AACTAAAGGA AACCGTTACA TAAACTCTTG 301 CTTAAGATTG AACGAGGAAA TGAAAGGAAT TGATAATCTT GCAACCCAGC TGAAAATCAT 361 CCGGAGAAAC GTAGATGCAT TGGACTCGGC TGTAAATAGG CTAGTTCGTT TCCCATGAGT 421 GTGGATCTGT CTTGATGGAC GATGTCAACT AGGTGAGCTG CACATATTTT GTGGTGCTTT 481 ATATATGAGT GAGATGCCAG TTAAGTCTTG CTTCTTTGAA GGTTTAAGAA TAAAACAGTG 541 TGTAATTGAA TGAATTGCAA GGCTGATACA TTTTCTAACC CATAGAAAAG CTTTCACCAA 601 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 1313 to 7023): Exon 1 1913 2102 ( 190 n); cDNA 1 190 ( 190 n); score: 1.000 Intron 1 2103 3598 (1496 n); Pd: 0.981 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 3599 3665 ( 67 n); cDNA 191 257 ( 67 n); score: 1.000 Intron 2 3666 4968 (1303 n); Pd: 0.967 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 4969 5017 ( 49 n); cDNA 258 306 ( 49 n); score: 1.000 Intron 3 5018 5339 ( 322 n); Pd: 0.969 (s: 1.00), Pa: 0.862 (s: 1.00) Exon 4 5340 5384 ( 45 n); cDNA 307 351 ( 45 n); score: 1.000 Intron 4 5385 5695 ( 311 n); Pd: 0.990 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 5696 5942 ( 247 n); cDNA 352 598 ( 247 n); score: 1.000 PPA cDNA 599 646 MATCH C08SLe0084H03.1+ SGN-E556545+ 1.000 598 0.926 C PGS_C08SLe0084H03.1+_SGN-E556545+ (1913 2102,3599 3665,4969 5017,5340 5384,5696 5942) Alignment (genomic DNA sequence = upper lines): CAGAGATGGA GAAGAAGAAC AACAACAAAG AGGGGAATGT GGTGATCACG AAAATGCGGA 1972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGATGGA GAAGAAGAAC AACAACAAAG AGGGGAATGT GGTGATCACG AAAATGCGGA 60 ATCTCAAACA TCGTCGTCTT TAAATGGCAA AGAAATACTG AAAGCAATCG AAGTTGTGGA 2032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCAAACA TCGTCGTCTT TAAATGGCAA AGAAATACTG AAAGCAATCG AAGTTGTGGA 120 GAGAGATTCT ATGGCGATCG CCCATAGCTA CACTTCACTT TTTGCTTCTC TTCGATCAAC 2092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGATTCT ATGGCGATCG CCCATAGCTA CACTTCACTT TTTGCTTCTC TTCGATCAAC 180 TTTATCAGAG GTTTCTTCTT TCTGTCCTTA ATTCTTGCAT TTCCTCATAA TCTTAGTACT 2152 |||||||||| TTTATCAGAG .......... .......... .......... .......... .......... 190 CGGTGGTGTT GAGGCCACTG CTGCAAATAG TGGCGTAGCT TTGAGATAGT GTTATCTGAA 2212 .......... .......... .......... .......... .......... .......... 190 AGTAATTATC TTTAGTCCTT CATCATGTTC AGTGTTTGGC ACGTTTCTTT TTAATTTGGT 2272 .......... .......... .......... .......... .......... .......... 190 TACTGATAAA AAGAGAGTCT TTTTTGTTTT TTTAATTTGG TTTGAGATGA TTGTATGTCA 2332 .......... .......... .......... .......... .......... .......... 190 GTGGAGGGAT GATTGTGAGA TTTAGAGAAT CCTCAATTTA TAATGAACTG GAGTGGATGT 2392 .......... .......... .......... .......... .......... .......... 190 TGAGTATAGA TATAGCTTAT CTTAGTTAGT TTGGGAATTA AGCGAAGAAG TAGTAGTTGG 2452 .......... .......... .......... .......... .......... .......... 190 ATAGAAAAGC ATGTTTAAGG TGATCAACGA GCTGCATGGT GATCTAAGCT CTTTGCCTGC 2512 .......... .......... .......... .......... .......... .......... 190 TTTTTGATTG TGCATTTTGC TTGTAAAATT TCTGAACTGG ATCAGTAGTT GGATAGAAAA 2572 .......... .......... .......... .......... .......... .......... 190 GTGTTCTTAT GATGATCAAC GAGGTGCATG GTGATTTAGG CTCTTCGCCT GCTGTTTGAT 2632 .......... .......... .......... .......... .......... .......... 190 TGTATATTTT GCTTGTAAAA ATGGTAAACT GGAATGAGTA GTTGGATAGA ATATGCGTAT 2692 .......... .......... .......... .......... .......... .......... 190 GATGATCAGC GAGCTACATG GTGATCTAGC CTCTTTGCCT GCTGTTTGAT TGTGCATTTT 2752 .......... .......... .......... .......... .......... .......... 190 GCTGGTAAAA TTTCTAAACT GGAATCAGTT TTCATCTGGG TAGATAGCAA GGTTTTTTCA 2812 .......... .......... .......... .......... .......... .......... 190 ATTCATAGCA TTCTGAATTC TCTGATATGA TCTCTTCTAA GCATCACATT TGACACTTTT 2872 .......... .......... .......... .......... .......... .......... 190 CACTTGTAGT TTAAACGGTT TGGTACGTTG TTGCTTATTC TGCGTAGAGT TATACTTTGT 2932 .......... .......... .......... .......... .......... .......... 190 TATCTATCTT CTCTTGGGAT ATTGCACTTG GGTTTCAGGT CATGTGACTG TCATGTTTCT 2992 .......... .......... .......... .......... .......... .......... 190 GATGAAGATT TAGGAATGTT GCTCCAGTGG CACTTGTATG GTACTTTGGA GGAAAGGAAA 3052 .......... .......... .......... .......... .......... .......... 190 GACCACTTGA AGGGGTGGAA ATTGGAATGC AAGTTTACCA ATTAGGACAT GTCGTTGTTT 3112 .......... .......... .......... .......... .......... .......... 190 TTGTTTAATT TTTTGTCTGC CCGGAGAGAT TACTGTCTGT ATAAATGATT AAGTCGCTTT 3172 .......... .......... .......... .......... .......... .......... 190 CAGAGAGAAC CACTAGTTCT CTTCTTTTTG ATAGATTGCT TGTATACGGA GTTCTTCTCC 3232 .......... .......... .......... .......... .......... .......... 190 CACAAGATTA ATAAAATATT ACTTTATAAT AAGAAACGAT TGGATGAGAT GTCAATCTTA 3292 .......... .......... .......... .......... .......... .......... 190 TTGGGAAGAA TTAGTTCGAT TTTACCTATT TATCCTTAGT ATGGCATGTG ACTGTCATAT 3352 .......... .......... .......... .......... .......... .......... 190 GACAATCTTT CAGTGACTTT TGCCGAGAAG TTATCCGATG ACTAAGTGAG ACTTTTGGGT 3412 .......... .......... .......... .......... .......... .......... 190 GAATCTAGAT GGCGAAATGC AATTCTAGCC ATAGATGGCA TAGTGCCATG TAATTATGAA 3472 .......... .......... .......... .......... .......... .......... 190 CCACAAAGTG CCAAAAAGCA TTACAATTTA GTGGACTTCA TGCATTTGAC ACCTGATATT 3532 .......... .......... .......... .......... .......... .......... 190 AGAACTTCTT TTTCTTTTCA TGTGTGTGTT CTGTCCATGT TTAAAGGAGA TAACATGATT 3592 .......... .......... .......... .......... .......... .......... 190 TTGCAGGTTA CTAGTACTTC TGTTGATCAC ATGATCTGCT TTGGTGATGC AGCAGGACGA 3652 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTTA CTAGTACTTC TGTTGATCAC ATGATCTGCT TTGGTGATGC AGCAGGACGA 244 GTTCAAGAAT GTGGTATATA CTTTTACGGT TTTACCTCTT CATCTTCAGT TGTTGATGTC 3712 |||||||||| ||| GTTCAAGAAT GTG....... .......... .......... .......... .......... 257 CTTACATCAA TAGTTTTTCT TTTATTCTGC TTGTTGTTCG TTCATTATTT ATTCAACAGA 3772 .......... .......... .......... .......... .......... .......... 257 CTAAGAATGA CTGTCTTTAA GTTCACGCTA GATCCCACAA ATGTTGTTTT GAGGTAAGAT 3832 .......... .......... .......... .......... .......... .......... 257 AAACACAAGA TCTAACATAG TATTGCGCAC TTATCTATCA GTTCTCTTGG AAACATGCAC 3892 .......... .......... .......... .......... .......... .......... 257 CTCATCAATA TTCTAAAAGA AAACCTTCTT AGGTTCATTA AGAATTTAAC TGCCATAAGT 3952 .......... .......... .......... .......... .......... .......... 257 TGGTACCATG GATGTACCAG CTTTATTTGT AGGCAAAGTG GAAGAATTGA TTTTTCCGCT 4012 .......... .......... .......... .......... .......... .......... 257 TCTCTCTTTG TTGCTTTAGT AATCCTTGTT CTAGAAGATG AGGACACTTG GTTTTGCCAG 4072 .......... .......... .......... .......... .......... .......... 257 TGATCATTAA TTCAAACTTC ATCCTAGATG TGACTGCAAG AGGTTTATCT CTGTTCTGCT 4132 .......... .......... .......... .......... .......... .......... 257 AACCCCAAAT GCATTATGCA TGAGACGCCT GGATTTCTCT TGACCAATTT TCTGCATAGT 4192 .......... .......... .......... .......... .......... .......... 257 TATCTTTTTT TGGATGTCTC CTTATTTACC ACTAGGACAA ACTAGTTAGG GTGTCATCCT 4252 .......... .......... .......... .......... .......... .......... 257 AAAACTTGAA TTATGGAGAA TTATTCTGGA GAGTAAGAGA TTTAGGATAG GTAGAAGTAA 4312 .......... .......... .......... .......... .......... .......... 257 CAGAATGTAA GGAAGTCTAT TGGGAAATTG GCGAACTTTT CCCAGCTTCT ATTCTTTGAT 4372 .......... .......... .......... .......... .......... .......... 257 GCCTGTGGTA GAAAGAAATA GTGGATGCTT TGAAGGAAAC CCCTCTCCTA TCCATATTCT 4432 .......... .......... .......... .......... .......... .......... 257 GGAATACAGA TTGCTCACAA ATCTGGAGTA ACCACCACCA GTGCAAATAA TTTTGTTAGC 4492 .......... .......... .......... .......... .......... .......... 257 TCCCTAGGAG GTTTATAGAA GGTCCATTGT TTCCGGGAGC TAACGTTTCT GCTCCAGCTT 4552 .......... .......... .......... .......... .......... .......... 257 GTAATTTTTA GAATCTACTG GATCTTGTTA ATGAAATTTT ACTTTACCAG ATTAAAAAGA 4612 .......... .......... .......... .......... .......... .......... 257 AAAGACACAA GTATAAGTAA GATTAGAGTA TATGCACAGG AAGTTAAGCC AAATAAGGAG 4672 .......... .......... .......... .......... .......... .......... 257 TGAAGTCGAA ACGAGATTAG ATTCAGATAA CTAGACTTGA TTTTCTAGGG AAAAAAGTTT 4732 .......... .......... .......... .......... .......... .......... 257 TATTTATAAA AATGTGATCA TAATTAAAAT AAGAAGTTTG ATAAGTGTGT TATGTAATAG 4792 .......... .......... .......... .......... .......... .......... 257 GAGGATACTT ACCAAAGTGA AAGACAAGTT TTATGTGATT AAATTCCAGA TCTTTCCTTT 4852 .......... .......... .......... .......... .......... .......... 257 CCTCATTTTA TTTTCTTAAA TGCATTCACA TTTCATTAAT ACCTTATTAA CATGTTTTAA 4912 .......... .......... .......... .......... .......... .......... 257 GTGATGTACT AAAGTTGAGC TGCACTAGTA TTAATGTTTG GCTGTTTATC TTGCAGCACT 4972 |||| .......... .......... .......... .......... .......... ......CACT 261 TGATGCAGCA ACTAAAGGAA ACCGTTACAT AAACTCTTGC TTAAGGTAGT ATTTTTTGTT 5032 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGATGCAGCA ACTAAAGGAA ACCGTTACAT AAACTCTTGC TTAAG..... .......... 306 ATTCTTTAGT CAAGTCCCTG TAGTACCTTC CTGAAAAAAA AAATTATCAG TCTCACCCTA 5092 .......... .......... .......... .......... .......... .......... 306 AGGGGTAGTT GGGAGGAAGC ACCAAGTTAA TGTCCTTATC TTTAGATGGT ATAACATCTT 5152 .......... .......... .......... .......... .......... .......... 306 AGATGTTTAT GGTATTCATG TACGTTTGGT TTTGGTAAAG CAATTCGTCA AGCCTCTAAA 5212 .......... .......... .......... .......... .......... .......... 306 TAGGGAACAT ATAACTTGCG TGTTTCGTAT CAGGTCTATT TTTGCATCAA ATAGTATAAT 5272 .......... .......... .......... .......... .......... .......... 306 TACATCCTTC CCACTCCAAA AATCTACTAT TCTGGCAAAT CTTTATAAGC TAACTCTCTC 5332 .......... .......... .......... .......... .......... .......... 306 TTCGCAGATT GAACGAGGAA ATGAAAGGAA TTGATAATCT TGCAACCCAG CTGTATCCTT 5392 ||| |||||||||| |||||||||| |||||||||| |||||||||| || .......ATT GAACGAGGAA ATGAAAGGAA TTGATAATCT TGCAACCCAG CT........ 351 TCCATGTGAT TATGGTTTGA TGTTAGACAT TATTTCTTCT ACAAGTCTCC AATTCACGTC 5452 .......... .......... .......... .......... .......... .......... 351 CACCAATTCT TTGTTTAAAG TTTGACTAAA GGATGCAATG GTGATTCTTG TCCTTGCAGT 5512 .......... .......... .......... .......... .......... .......... 351 TGGCAATTAA CCAGTGGACT GACAGGTTTC ATTTCATTGT TTTCCTTTTT TATATCAATA 5572 .......... .......... .......... .......... .......... .......... 351 GTTTTTCGTT TATTGTCTTG AACAAGAATT CATGGGCACC TTGCTCCCTG CAATGACATA 5632 .......... .......... .......... .......... .......... .......... 351 GTATGACTGT TTAGAACCAA TCAATATATC ATGTGTTCTT TGTGACTCCT TGATACCTTG 5692 .......... .......... .......... .......... .......... .......... 351 AAGGAAAATC ATCCGGAGAA ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG 5752 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAAAATC ATCCGGAGAA ACGTAGATGC ATTGGACTCG GCTGTAAATA GGCTAGTTCG 408 TTTCCCATGA GTGTGGATCT GTCTTGATGG ACGATGTCAA CTAGGTGAGC TGCACATATT 5812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCCATGA GTGTGGATCT GTCTTGATGG ACGATGTCAA CTAGGTGAGC TGCACATATT 468 TTGTGGTGCT TTATATATGA GTGAGATGCC AGTTAAGTCT TGCTTCTTTG AAGGTTTAAG 5872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTGCT TTATATATGA GTGAGATGCC AGTTAAGTCT TGCTTCTTTG AAGGTTTAAG 528 AATAAAACAG TGTGTAATTG AATGAATTGC AAGGCTGATA CATTTTCTAA CCCATAGAAA 5932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAAACAG TGTGTAATTG AATGAATTGC AAGGCTGATA CATTTTCTAA CCCATAGAAA 588 AGCTTTCACC 5942 |||||||||| AGCTTTCACC 598 hqPGS_C08SLe0084H03.1+_SGN-E556545+ (1913 2102,3599 3665,4969 5017,5340 5384,5696 5942) ******************************************************************************** EST sequence 61 +strand 646 n (File: SGN-E314977+) 1 AACTGATAAC AGACGATGAC AGAGATGGAG AAGAAGAACA ACAACAAAGA GGGGAATGTG 61 GTGATCACGA AAATGCGGAA TCTCAAACAT CGTCGTCTTT AAATGGCAAA GAAATACTGA 121 AAGCAATCGA AGTTGTGGAG AGAGATTCTA TGGCGATCGC CCATAGCTAC ACTTCACTTT 181 TTGCTTCTCT TCGATCAACT TTATCAGAGG TTTCTTCTTT CTGTCCTTAA TTCTTGCATT 241 TCCTCATAAT CTTAGTACTC GGTGGTGTTG AGGCCACTGC TGCAAATAGT GGCGTAGCTT 301 TGAGATAGTG TTATCTGAAA GTAATTATCT TTAGTCCTTC ATCATGTTCA GTGTTTGGCA 361 CGTTTCTTTT TAATTTGGTT ACTGATAAAA AGAGAGTCTT TTTTGTTTTT TTAATTTGGT 421 TTGAGATGAT TGTATGTCAG TGGAGGGATG ATTGTGAGAT TTAAAGAATC CTCAATTTAT 481 AATGAACTGG AGTGGATGTT GAGTATAGAT ATAGCTTATC TTAGTTAGTT TGGGAATTAA 541 GCGAAGAAGT AGTAGTTGGA TAGAAAAGCA TGTTTTAGGT GATCAACGAG CTGGCATGGT 601 GATCTAAGCT CTTTGCCTGC TTTTTGATTG TGCATTTTGC TTGGAA Predicted gene structure (within gDNA segment 1294 to 3175): Exon 1 1894 2538 ( 645 n); cDNA 1 646 ( 646 n); score: 0.991 MATCH C08SLe0084H03.1+ SGN-E314977+ 0.991 645 0.998 C PGS_C08SLe0084H03.1+_SGN-E314977+ (1894 2538) Alignment (genomic DNA sequence = upper lines): AACTGATAAC AGACGATGAC AGAGATGGAG AAGAAGAACA ACAACAAAGA GGGGAATGTG 1953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGATAAC AGACGATGAC AGAGATGGAG AAGAAGAACA ACAACAAAGA GGGGAATGTG 60 GTGATCACGA AAATGCGGAA TCTCAAACAT CGTCGTCTTT AAATGGCAAA GAAATACTGA 2013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATCACGA AAATGCGGAA TCTCAAACAT CGTCGTCTTT AAATGGCAAA GAAATACTGA 120 AAGCAATCGA AGTTGTGGAG AGAGATTCTA TGGCGATCGC CCATAGCTAC ACTTCACTTT 2073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAATCGA AGTTGTGGAG AGAGATTCTA TGGCGATCGC CCATAGCTAC ACTTCACTTT 180 TTGCTTCTCT TCGATCAACT TTATCAGAGG TTTCTTCTTT CTGTCCTTAA TTCTTGCATT 2133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTCTCT TCGATCAACT TTATCAGAGG TTTCTTCTTT CTGTCCTTAA TTCTTGCATT 240 TCCTCATAAT CTTAGTACTC GGTGGTGTTG AGGCCACTGC TGCAAATAGT GGCGTAGCTT 2193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCATAAT CTTAGTACTC GGTGGTGTTG AGGCCACTGC TGCAAATAGT GGCGTAGCTT 300 TGAGATAGTG TTATCTGAAA GTAATTATCT TTAGTCCTTC ATCATGTTCA GTGTTTGGCA 2253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGATAGTG TTATCTGAAA GTAATTATCT TTAGTCCTTC ATCATGTTCA GTGTTTGGCA 360 CGTTTCTTTT TAATTTGGTT ACTGATAAAA AGAGAGTCTT TTTTGTTTTT TTAATTTGGT 2313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTTCTTTT TAATTTGGTT ACTGATAAAA AGAGAGTCTT TTTTGTTTTT TTAATTTGGT 420 TTGAGATGAT TGTATGTCAG TGGAGGGATG ATTGTGAGAT TTAGAGAATC CTCAATTTAT 2373 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TTGAGATGAT TGTATGTCAG TGGAGGGATG ATTGTGAGAT TTAAAGAATC CTCAATTTAT 480 AATGAACTGG AGTGGATGTT GAGTATAGAT ATAGCTTATC TTAGTTAGTT TGGGAATTAA 2433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAACTGG AGTGGATGTT GAGTATAGAT ATAGCTTATC TTAGTTAGTT TGGGAATTAA 540 GCGAAGAAGT AGTAGTTGGA TAGAAAAGCA TGTTTAAGGT GATCAACGAG CT-GCATGGT 2492 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| || ||||||| GCGAAGAAGT AGTAGTTGGA TAGAAAAGCA TGTTTTAGGT GATCAACGAG CTGGCATGGT 600 GATCTAAGCT CTTTGCCTGC TTTTTGATTG TGCATTTTGC TTGTAA 2538 |||||||||| |||||||||| |||||||||| |||||||||| ||| || GATCTAAGCT CTTTGCCTGC TTTTTGATTG TGCATTTTGC TTGGAA 646 hqPGS_C08SLe0084H03.1+_SGN-E314977+ (1894 2538) ******************************************************************************** EST sequence 147 -strand 336 n (File: SGN-E237330-) 1 CGAGGAAATG AAAGGAATTG ATAATCTTGC AACCCAGCTG AAAATCATCC GGAGAAACGT 61 AGATGCATTG GACTCGGCTG TAAATAGGCT AGTTCGTTTC CCATGAGTGT GGATCTGTCT 121 TGATGGACGA TGTCAACTAG GTGAGCTGCA CATATTTTGT GGTGCTTTAT ATATGAGTGA 181 GATGCCAGTT AAGTCTTGCT TCTTTGAAGG TTTAAGAATA AAACAGTGTG TAATTGAATG 241 AATTGCAAGG CTGATACATT TTCTAACCCA TAGAAAAGCT TTCACCATTG TTGCTTTTGC 301 ATACAATTTT TACCTCACTA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 4736 to 6736): Exon 1 5346 5384 ( 39 n); cDNA 1 39 ( 39 n); score: 1.000 Intron 1 5385 5695 ( 311 n); Pd: 0.990 (s: 0), Pa: 0.954 (s: 1.00) Exon 2 5696 5975 ( 280 n); cDNA 40 319 ( 280 n); score: 1.000 PPA cDNA 320 336 MATCH C08SLe0084H03.1+ SGN-E237330- 1.000 319 0.949 C PGS_C08SLe0084H03.1+_SGN-E237330- (5346 5384,5696 5975) Alignment (genomic DNA sequence = upper lines): CGAGGAAATG AAAGGAATTG ATAATCTTGC AACCCAGCTG TATCCTTTCC ATGTGATTAT 5405 |||||||||| |||||||||| |||||||||| ||||||||| CGAGGAAATG AAAGGAATTG ATAATCTTGC AACCCAGCT. .......... .......... 39 GGTTTGATGT TAGACATTAT TTCTTCTACA AGTCTCCAAT TCACGTCCAC CAATTCTTTG 5465 .......... .......... .......... .......... .......... .......... 39 TTTAAAGTTT GACTAAAGGA TGCAATGGTG ATTCTTGTCC TTGCAGTTGG CAATTAACCA 5525 .......... .......... .......... .......... .......... .......... 39 GTGGACTGAC AGGTTTCATT TCATTGTTTT CCTTTTTTAT ATCAATAGTT TTTCGTTTAT 5585 .......... .......... .......... .......... .......... .......... 39 TGTCTTGAAC AAGAATTCAT GGGCACCTTG CTCCCTGCAA TGACATAGTA TGACTGTTTA 5645 .......... .......... .......... .......... .......... .......... 39 GAACCAATCA ATATATCATG TGTTCTTTGT GACTCCTTGA TACCTTGAAG GAAAATCATC 5705 |||||||||| .......... .......... .......... .......... .......... GAAAATCATC 49 CGGAGAAACG TAGATGCATT GGACTCGGCT GTAAATAGGC TAGTTCGTTT CCCATGAGTG 5765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGAAACG TAGATGCATT GGACTCGGCT GTAAATAGGC TAGTTCGTTT CCCATGAGTG 109 TGGATCTGTC TTGATGGACG ATGTCAACTA GGTGAGCTGC ACATATTTTG TGGTGCTTTA 5825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATCTGTC TTGATGGACG ATGTCAACTA GGTGAGCTGC ACATATTTTG TGGTGCTTTA 169 TATATGAGTG AGATGCCAGT TAAGTCTTGC TTCTTTGAAG GTTTAAGAAT AAAACAGTGT 5885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATGAGTG AGATGCCAGT TAAGTCTTGC TTCTTTGAAG GTTTAAGAAT AAAACAGTGT 229 GTAATTGAAT GAATTGCAAG GCTGATACAT TTTCTAACCC ATAGAAAAGC TTTCACCATT 5945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATTGAAT GAATTGCAAG GCTGATACAT TTTCTAACCC ATAGAAAAGC TTTCACCATT 289 GTTGCTTTTG CATACAATTT TTACCTCACT 5975 |||||||||| |||||||||| |||||||||| GTTGCTTTTG CATACAATTT TTACCTCACT 319 hqPGS_C08SLe0084H03.1+_SGN-E237330- (5346 5384,5696 5975) ******************************************************************************** EST sequence 146 -strand 300 n (File: SGN-E237221-) 1 GAAAATCATC CGGAGAAACG TAGATGCATT GGACTCGGCT GTAAATAGGC TAGTTCGTTT 61 CCCATGAGTG TGGATCTGTC TTGATGGACG ATGTCAACTA GGTGAGCTGC ACATATTTTG 121 TGGTGCTTTA TATATGAGTG AGATGCCAGT TAAGTCTTGC TTCTTTGAAG GTTTAAGAAT 181 AAAACAGTGT GTAATTGAAT GAATTGCAAG GCTGATACAT TTTCTAACCC ATAGAAAAGC 241 TTTCACCATT GTTGCTTTTG CATACAATTT TTACCTCACT AAAAAAAAAA AAAAAAAACT Predicted gene structure (within gDNA segment 5086 to 6766): Exon 1 5696 5975 ( 280 n); cDNA 1 280 ( 280 n); score: 1.000 PPA cDNA 281 299 MATCH C08SLe0084H03.1+ SGN-E237221- 1.000 280 0.933 C PGS_C08SLe0084H03.1+_SGN-E237221- (5696 5975) Alignment (genomic DNA sequence = upper lines): GAAAATCATC CGGAGAAACG TAGATGCATT GGACTCGGCT GTAAATAGGC TAGTTCGTTT 5755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATCATC CGGAGAAACG TAGATGCATT GGACTCGGCT GTAAATAGGC TAGTTCGTTT 60 CCCATGAGTG TGGATCTGTC TTGATGGACG ATGTCAACTA GGTGAGCTGC ACATATTTTG 5815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATGAGTG TGGATCTGTC TTGATGGACG ATGTCAACTA GGTGAGCTGC ACATATTTTG 120 TGGTGCTTTA TATATGAGTG AGATGCCAGT TAAGTCTTGC TTCTTTGAAG GTTTAAGAAT 5875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGCTTTA TATATGAGTG AGATGCCAGT TAAGTCTTGC TTCTTTGAAG GTTTAAGAAT 180 AAAACAGTGT GTAATTGAAT GAATTGCAAG GCTGATACAT TTTCTAACCC ATAGAAAAGC 5935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAGTGT GTAATTGAAT GAATTGCAAG GCTGATACAT TTTCTAACCC ATAGAAAAGC 240 TTTCACCATT GTTGCTTTTG CATACAATTT TTACCTCACT 5975 |||||||||| |||||||||| |||||||||| |||||||||| TTTCACCATT GTTGCTTTTG CATACAATTT TTACCTCACT 280 hqPGS_C08SLe0084H03.1+_SGN-E237221- (5696 5975) ******************************************************************************** EST sequence 109 +strand 652 n (File: SGN-E322356+) 1 CTGTTTTGGC CTTGTTTCTT GAAATCTGAA ACTAAAAAAT TCTCTTTGTA TGGTCCAATA 61 TGGTTGTGGT CCTGAGAACT AAGATCCCAT TTGGGATCAA GATTCAAGAT TTATGCTTTC 121 TTGGTGTTTT ATGATTTTGG TGTCGTTTTT TAGAATTTTG AGCTGATTTT TTCTTCACTG 181 TCATTTTGGT GAGACAAAAG ATTGAAGCTT TGAAAATGGC TATGGGACAC CAAGATCAAG 241 ATGGAGTCCC AGGCAACTTG AGAAAGCAAC TTGCTCTTGC TGTTAGAGGC ATTCAATGGA 301 GCTATGCAAT CTTCTGGTCA ACTGCAGTTA CACAACCAGG GGTGTTGAAA TGGATTGATG 361 GGTACTATAA TGGGGATATC AAGACCAGGA AGACTGTTCA GGCGGGGGAA GTTAATGAAG 421 ACCAGCTGGG GTTGCATAGA ACTGAGCAAT TGAAAGAACT TTATAGTTCC CTCTTAACAA 481 GTGAAAGTGA AGAAGACCTG CAGCCACAGG CCAAAAGGCC GTCGGCCTCA TTATCTCCAG 541 AAGATCTCAC TGATACAGAG TGGTTACCAG GGAAGACCTT AGCACAAATG AAACTGTTTG 601 GCTGTGCAAC GCTCACCAAG CCGAGAGTAA AGTCTTTTCT CGTTCTTTGC TA Predicted gene structure (within gDNA segment 7492 to 10593): Exon 1 8092 8431 ( 340 n); cDNA 1 340 ( 340 n); score: 1.000 Intron 1 8432 9273 ( 842 n); Pd: 0.993 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 2 9274 9495 ( 222 n); cDNA 341 562 ( 222 n); score: 1.000 Intron 2 9496 9892 ( 397 n); Pd: 0.390 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 3 9893 9983 ( 91 n); cDNA 563 652 ( 90 n); score: 0.989 MATCH C08SLe0084H03.1+ SGN-E322356+ 0.998 653 1.002 C PGS_C08SLe0084H03.1+_SGN-E322356+ (8092 8431,9274 9495,9893 9983) Alignment (genomic DNA sequence = upper lines): CTGTTTTGGC CTTGTTTCTT GAAATCTGAA ACTAAAAAAT TCTCTTTGTA TGGTCCAATA 8151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTTTGGC CTTGTTTCTT GAAATCTGAA ACTAAAAAAT TCTCTTTGTA TGGTCCAATA 60 TGGTTGTGGT CCTGAGAACT AAGATCCCAT TTGGGATCAA GATTCAAGAT TTATGCTTTC 8211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGTGGT CCTGAGAACT AAGATCCCAT TTGGGATCAA GATTCAAGAT TTATGCTTTC 120 TTGGTGTTTT ATGATTTTGG TGTCGTTTTT TAGAATTTTG AGCTGATTTT TTCTTCACTG 8271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTGTTTT ATGATTTTGG TGTCGTTTTT TAGAATTTTG AGCTGATTTT TTCTTCACTG 180 TCATTTTGGT GAGACAAAAG ATTGAAGCTT TGAAAATGGC TATGGGACAC CAAGATCAAG 8331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTTGGT GAGACAAAAG ATTGAAGCTT TGAAAATGGC TATGGGACAC CAAGATCAAG 240 ATGGAGTCCC AGGCAACTTG AGAAAGCAAC TTGCTCTTGC TGTTAGAGGC ATTCAATGGA 8391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAGTCCC AGGCAACTTG AGAAAGCAAC TTGCTCTTGC TGTTAGAGGC ATTCAATGGA 300 GCTATGCAAT CTTCTGGTCA ACTGCAGTTA CACAACCAGG GTAATAAGGC CTAACATTTT 8451 |||||||||| |||||||||| |||||||||| |||||||||| GCTATGCAAT CTTCTGGTCA ACTGCAGTTA CACAACCAGG .......... .......... 340 CCTTCAACTT GTTCTTTTCT TAATTGTTTT TAGCATGACT TCTTCGCTAC TGTATTTGTT 8511 .......... .......... .......... .......... .......... .......... 340 TTACTTATTT GTTTTTTTGG TTTCGCAAAG GTTTATCGAA AATAAACTTT TTACCTTAGG 8571 .......... .......... .......... .......... .......... .......... 340 TACACTCTAA CCTCCTCAAA CCCGACTCGT GGAGTTACAA TTACACTTGT TGTTGTTGTA 8631 .......... .......... .......... .......... .......... .......... 340 TCTTCCTTGA ATTTTATAGT AGAGAAAGTC TTCAAATTAA AGGACTGGTA AATTTGGAAT 8691 .......... .......... .......... .......... .......... .......... 340 GGGAAGGAGT GTTGAGGTTA AGGTGAAGAG TGATGGTACT TATGTTACCC CTTTATTCAT 8751 .......... .......... .......... .......... .......... .......... 340 GTACAATCCC TAGTTCCAGT TCTTGTACTG TTAGGAAGTA AGGATATATC AATTTGATTT 8811 .......... .......... .......... .......... .......... .......... 340 CAACAATTTA TCTCCCTCCT AGAAGGGAAG CTTCTTTGGT GCAATGGTAA GACTTCCTGC 8871 .......... .......... .......... .......... .......... .......... 340 CGAGTGGCCA ATAGACGGGT TCAAGGTGTT GGAAACAGTC TCTTGCAGAA GTGCCAGGTA 8931 .......... .......... .......... .......... .......... .......... 340 AGACTGCATA CAATAGATCC AATGTGGTTC GGCATTTACT TGAACTCTGT GCATAGTGGG 8991 .......... .......... .......... .......... .......... .......... 340 AGCTTAGTAA AACGGAGTTT ATCTGCCAAG GATTTCTTTT TTCTGAAAGC GTAGTAGTGT 9051 .......... .......... .......... .......... .......... .......... 340 TTTCCTTATT GATTGGCATG TTATCTTCAC TGCCGTATTT TCCTTTTTTC GTAACTACTT 9111 .......... .......... .......... .......... .......... .......... 340 GCAATGGTTG CACTTGATCC GAGGGTCTTT CACTACCCTC CCTAGACCCA ACTTGTGGTA 9171 .......... .......... .......... .......... .......... .......... 340 TTACACTCGA TATGATGTTG TTGTATATAT ATCTTTTAGG AATGTAGCAT TGTAAATATG 9231 .......... .......... .......... .......... .......... .......... 340 TTTTCAAGAT AATGTTCTAA AATCTGGGAT ATTATCTTCT AGGGTGTTGA AATGGATTGA 9291 |||||||| |||||||||| .......... .......... .......... .......... ..GGTGTTGA AATGGATTGA 358 TGGGTACTAT AATGGGGATA TCAAGACCAG GAAGACTGTT CAGGCGGGGG AAGTTAATGA 9351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTACTAT AATGGGGATA TCAAGACCAG GAAGACTGTT CAGGCGGGGG AAGTTAATGA 418 AGACCAGCTG GGGTTGCATA GAACTGAGCA ATTGAAAGAA CTTTATAGTT CCCTCTTAAC 9411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACCAGCTG GGGTTGCATA GAACTGAGCA ATTGAAAGAA CTTTATAGTT CCCTCTTAAC 478 AAGTGAAAGT GAAGAAGACC TGCAGCCACA GGCCAAAAGG CCGTCGGCCT CATTATCTCC 9471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGAAAGT GAAGAAGACC TGCAGCCACA GGCCAAAAGG CCGTCGGCCT CATTATCTCC 538 AGAAGATCTC ACTGATACAG AGTGGTATTT CCTAGTATGC ATGTCATTTG TCTTCAATGT 9531 |||||||||| |||||||||| |||| AGAAGATCTC ACTGATACAG AGTG...... .......... .......... .......... 562 TGGCCAAGGG TAATTTCTTG AAATTCCATA TCTTGTGCAT GGAGTTTGTT TTCTGATGTC 9591 .......... .......... .......... .......... .......... .......... 562 TTGGTTAGAA TTTTTAGCCC ACTTAGGCCA TACTTGGTTA TAAAACGCAA AGTTCATAAC 9651 .......... .......... .......... .......... .......... .......... 562 CTCATATAAT GTAAAGTAAC GATCTTTCTA GTCTATTCCT GAAATCATTT GTTTTCTTAA 9711 .......... .......... .......... .......... .......... .......... 562 TGTTCAAGTG AAGCGTTGCT CCCTTTCTGG TTTTGAAGTT TATTACCGAT GCTCCGTTTA 9771 .......... .......... .......... .......... .......... .......... 562 GTTCTGTTCT TAGAGTAGAT AGGGAAGTAA ATGATCGATA TCTATCTTCT TCTTAAAAGA 9831 .......... .......... .......... .......... .......... .......... 562 ATAGTGCATG ATGTGTTCAC TATTGTTAGG TATTTAATTG TTGTGTAAAA TTATTACACA 9891 .......... .......... .......... .......... .......... .......... 562 GGTTACCAGG GAAGACCTTA GCAACAAATG AAACTGTTTG GCTGTGCAAC GCTCACCAAG 9951 ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| .GTTACCAGG GAAGACCTTA GC-ACAAATG AAACTGTTTG GCTGTGCAAC GCTCACCAAG 620 CCGAGAGTAA AGTCTTTTCT CGTTCTTTGC TA 9983 |||||||||| |||||||||| |||||||||| || CCGAGAGTAA AGTCTTTTCT CGTTCTTTGC TA 652 hqPGS_C08SLe0084H03.1+_SGN-E322356+ (8092 8431,9274 9495,9893 9983) ******************************************************************************** EST sequence 83 +strand 332 n (File: SGN-E329550+) 1 TCACGGAATA TCCTAACCTC ATTCAGCAAA TAAAAAATTG GTTTCTAGAG GTTGATTACT 61 CCGTTATTTT GAAGAGGCCT AATTATGTCT CCAACGATGC AAAAAATGAC ACGAATATCG 121 GTAGCCAAAA GCCTGATCAT AATGCACTTG AAAATGATGC TTATCCAGTT GAAATAAATT 181 CACCTCATGA TAGTTCAAAT GGTTTTGTCG CCAATCAAGA GGCAGAAGAT TCACTGATGG 241 TGGTAGACGG TATTGGGGAA ACTTCACAAG CTCAAAGCTG GAGGTTCATG GATGATAATA 301 TCAGTAATGG TGCGAATAAT TCCTTGAATT CC Predicted gene structure (within gDNA segment 10140 to 11762): Exon 1 10821 11152 ( 332 n); cDNA 1 332 ( 332 n); score: 0.991 MATCH C08SLe0084H03.1+ SGN-E329550+ 0.991 332 1.000 C PGS_C08SLe0084H03.1+_SGN-E329550+ (10821 11152) Alignment (genomic DNA sequence = upper lines): TCACGGAAGA TCCTAACCTC ATTCAGCAAA TAAAAAATTC CTTTCTAGAG GTTGATTACT 10880 |||||||| | |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| TCACGGAATA TCCTAACCTC ATTCAGCAAA TAAAAAATTG GTTTCTAGAG GTTGATTACT 60 CCGTTATTTT GAAGAGGCCT AATTATGTCT CCAACGATGC AAAAAATGAC ACGAATATCG 10940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTATTTT GAAGAGGCCT AATTATGTCT CCAACGATGC AAAAAATGAC ACGAATATCG 120 GTAGCCAAAA GCCTGATCAT AATGCACTTG AAAATGATGC TTATCCAGTT GAAATAAATT 11000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCCAAAA GCCTGATCAT AATGCACTTG AAAATGATGC TTATCCAGTT GAAATAAATT 180 CACCTCATGA TAGTTCAAAT GGTTTTGTCG CCAATCAAGA GGCAGAAGAT TCACTGATGG 11060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCTCATGA TAGTTCAAAT GGTTTTGTCG CCAATCAAGA GGCAGAAGAT TCACTGATGG 240 TGGTAGACGG TATTGGGGAA ACTTCACAAG CTCAAAGCTG GAGGTTCATG GATGATAATA 11120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTAGACGG TATTGGGGAA ACTTCACAAG CTCAAAGCTG GAGGTTCATG GATGATAATA 300 TCAGTAATGG TGCGAATAAT TCCTTGAATT CC 11152 |||||||||| |||||||||| |||||||||| || TCAGTAATGG TGCGAATAAT TCCTTGAATT CC 332 hqPGS_C08SLe0084H03.1+_SGN-E329550+ (10821 11152) ******************************************************************************** EST sequence 78 +strand 440 n (File: SGN-E299431+) 1 AGAATAGCCT TTGGAGACCA GAAGTTGATG ACATTGATAG AAACCGTGTT ATTTCAGAGA 61 GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT TGCATCGATG CTGCCAACTA 121 GTAGCAAGGT TGACAAAATA TCACTACTCG ATGAGACAAT AGAATACATG AAAGAGCTTG 181 AAAGGAGAGT TCAGGAGCTG GAGGCGAGAT CAGCAAGACG ATCAAATGAT ACTGCAGAGC 241 AGACATCTGA TAATTGTGGC ACTAGCAAAT TCAATGACAT CAGGGGATCA CTACCGAACA 301 AAAGGAAGGC ATGTGATATG GATGAAATAG AACCTGAAAG CTCCAATGGA TTACTGAAAT 361 GTAGTTCAGC TGATAGTATT GTCATCAATA TGATCGATAA GGAAGTCTCG ATCAAGATGA 421 GTTGTCTTTG GAGCGAGAGC Predicted gene structure (within gDNA segment 10923 to 12658): Exon 1 11523 11650 ( 128 n); cDNA 1 128 ( 128 n); score: 1.000 Intron 1 11651 11736 ( 86 n); Pd: 0.812 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 11737 12048 ( 312 n); cDNA 129 440 ( 312 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E299431+ 1.000 440 1.000 C PGS_C08SLe0084H03.1+_SGN-E299431+ (11523 11650,11737 12048) Alignment (genomic DNA sequence = upper lines): AGAATAGCCT TTGGAGACCA GAAGTTGATG ACATTGATAG AAACCGTGTT ATTTCAGAGA 11582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATAGCCT TTGGAGACCA GAAGTTGATG ACATTGATAG AAACCGTGTT ATTTCAGAGA 60 GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT TGCATCGATG CTGCCAACTA 11642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT TGCATCGATG CTGCCAACTA 120 GTAGCAAGGT ACTGGAAGAT CTCCTCAAGT TTACATAGCT CCTGTTTGAT GACACATTAA 11702 |||||||| GTAGCAAG.. .......... .......... .......... .......... .......... 128 TCAGAAATTG TGTTTTTCCC ATTGGTGTTT GCAGGTTGAC AAAATATCAC TACTCGATGA 11762 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTTGAC AAAATATCAC TACTCGATGA 154 GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG GAGCTGGAGG CGAGATCAGC 11822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG GAGCTGGAGG CGAGATCAGC 214 AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT TGTGGCACTA GCAAATTCAA 11882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT TGTGGCACTA GCAAATTCAA 274 TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT GATATGGATG AAATAGAACC 11942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT GATATGGATG AAATAGAACC 334 TGAAAGCTCC AATGGATTAC TGAAATGTAG TTCAGCTGAT AGTATTGTCA TCAATATGAT 12002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGCTCC AATGGATTAC TGAAATGTAG TTCAGCTGAT AGTATTGTCA TCAATATGAT 394 CGATAAGGAA GTCTCGATCA AGATGAGTTG TCTTTGGAGC GAGAGC 12048 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CGATAAGGAA GTCTCGATCA AGATGAGTTG TCTTTGGAGC GAGAGC 440 hqPGS_C08SLe0084H03.1+_SGN-E299431+ (11523 11650,11737 12048) ******************************************************************************** EST sequence 86 +strand 620 n (File: SGN-E235386+) 1 AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 61 TGCATCGATG CTGCCAACTA GTAGCAAGGT TGACAAAATA TCACTACTCG ATGAGACAAT 121 AGAATACATG AAAGAGCTTG AAAGGAGAGT TCAGGAGCTG GAGGCGAGAT CAGCAAGACG 181 ATCAAATGAT ACTGCAGAGC AGACATCTGA TAATTGTGGC ACTAGCAAAT TCAATGACAT 241 CAGGGGATCA CTACCGAACA AAAGGAAGGC ATGTGATATG GATGAAATAG AACCTGAAAG 301 CTCCAATGGA TTACTGAAAT GTAGTTCAGC TGATAGTATT GTCATCAATA TGATCGATAA 361 GGAAGTCTCG ATCAAGATGA GTTGTCTTTG GAGCGAGAGC TTGTTGCTTA AAATTATGGA 421 GGCACTGACT GACCTACATA TGGATTGCCA TACAGTTCAG TCTTCCAACC TTGATGGGAT 481 TCTATCCATT GCTATCGAAT CCAAGTCAAC CGGATCGAAA ACACTAGCAG TCGGAACAAT 541 TAGAGAAGCA CTTCAGAGAG TAGTATGGAA ATCTTGAAGA TTAGTCAGTC AAGGTTGGTC 601 AATTAAGCCC ATATGAAAAA Predicted gene structure (within gDNA segment 10963 to 13295): Exon 1 11563 11650 ( 88 n); cDNA 1 88 ( 88 n); score: 1.000 Intron 1 11651 11736 ( 86 n); Pd: 0.812 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 11737 12153 ( 417 n); cDNA 89 505 ( 417 n); score: 1.000 Intron 2 12154 12570 ( 417 n); Pd: 0.928 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 12571 12685 ( 115 n); cDNA 506 620 ( 115 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E235386+ 1.000 620 1.000 C PGS_C08SLe0084H03.1+_SGN-E235386+ (11563 11650,11737 12153,12571 12685) Alignment (genomic DNA sequence = upper lines): AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 11622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 60 TGCATCGATG CTGCCAACTA GTAGCAAGGT ACTGGAAGAT CTCCTCAAGT TTACATAGCT 11682 |||||||||| |||||||||| |||||||| TGCATCGATG CTGCCAACTA GTAGCAAG.. .......... .......... .......... 88 CCTGTTTGAT GACACATTAA TCAGAAATTG TGTTTTTCCC ATTGGTGTTT GCAGGTTGAC 11742 |||||| .......... .......... .......... .......... .......... ....GTTGAC 94 AAAATATCAC TACTCGATGA GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG 11802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATATCAC TACTCGATGA GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG 154 GAGCTGGAGG CGAGATCAGC AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT 11862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTGGAGG CGAGATCAGC AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT 214 TGTGGCACTA GCAAATTCAA TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT 11922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGCACTA GCAAATTCAA TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT 274 GATATGGATG AAATAGAACC TGAAAGCTCC AATGGATTAC TGAAATGTAG TTCAGCTGAT 11982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGGATG AAATAGAACC TGAAAGCTCC AATGGATTAC TGAAATGTAG TTCAGCTGAT 334 AGTATTGTCA TCAATATGAT CGATAAGGAA GTCTCGATCA AGATGAGTTG TCTTTGGAGC 12042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATTGTCA TCAATATGAT CGATAAGGAA GTCTCGATCA AGATGAGTTG TCTTTGGAGC 394 GAGAGCTTGT TGCTTAAAAT TATGGAGGCA CTGACTGACC TACATATGGA TTGCCATACA 12102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCTTGT TGCTTAAAAT TATGGAGGCA CTGACTGACC TACATATGGA TTGCCATACA 454 GTTCAGTCTT CCAACCTTGA TGGGATTCTA TCCATTGCTA TCGAATCCAA GGTTTGTCAA 12162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTTCAGTCTT CCAACCTTGA TGGGATTCTA TCCATTGCTA TCGAATCCAA G......... 505 CGCCGAGCTC TCTTTAATGG CCATAACCAA TTCAAAAAAT TTGGCGCAAC TTATGAAATA 12222 .......... .......... .......... .......... .......... .......... 505 CTCCGTCCAT CCCAATTTAT ATGGCACTGT TTGACTTGGC ACAAAGTTAA AGAAAGAAGG 12282 .......... .......... .......... .......... .......... .......... 505 AAGACTTTTG AAATTTGTGG GCTTAAATAC TTCTTGACCA TTTGTGACTA TAAATTTTCA 12342 .......... .......... .......... .......... .......... .......... 505 TTAAGGGTAA AAAAAGAATT TTAAAGTTAA ATTGTTCCCA ATTATGGAAA GGAGACTTTT 12402 .......... .......... .......... .......... .......... .......... 505 CTTTTGGGAC GGACTATGAA GGAAAGTGTG CTATATAAAT TGGAACAGAG GGAGTACTAG 12462 .......... .......... .......... .......... .......... .......... 505 CTGACATACT CTCATGTGTT TGTTTCCAAT CTTATTATGT TAGATACTCT GTTTATATTG 12522 .......... .......... .......... .......... .......... .......... 505 TAACTAAAGA TTCATACTCA TTCTTCTTTG GTATCTTCTC TGTTGCAGTC AACCGGATCG 12582 || |||||||||| .......... .......... .......... .......... ........TC AACCGGATCG 517 AAAACACTAG CAGTCGGAAC AATTAGAGAA GCACTTCAGA GAGTAGTATG GAAATCTTGA 12642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACACTAG CAGTCGGAAC AATTAGAGAA GCACTTCAGA GAGTAGTATG GAAATCTTGA 577 AGATTAGTCA GTCAAGGTTG GTCAATTAAG CCCATATGAA AAA 12685 |||||||||| |||||||||| |||||||||| |||||||||| ||| AGATTAGTCA GTCAAGGTTG GTCAATTAAG CCCATATGAA AAA 620 hqPGS_C08SLe0084H03.1+_SGN-E235386+ (11563 11650,11737 12153,12571 12685) ******************************************************************************** EST sequence 103 +strand 499 n (File: SGN-E236045+) 1 AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 61 TGCATCGATG CTGCCAACTA GTAGCAAGGT TGACAAAATA TCACTACTCG ATGAGACAAT 121 AGAATACATG AAAGAGCTTG AAAGGAGAGT TCAGGAGCTG GAGGCGAGAT CAGCAAGACG 181 ATCAAATGAT ACTGCAGAGC AGACATCTGA TAATTGTGGC ACTAGCAAAT TCAATGACAT 241 CAGGGGATCA CTACCGAACA AAAGGAAGGC ATGTGATATG GATGAAATAG AACCTGAAAG 301 CTCCAATGGA TTACTGAAAT GTAGTTCAGC TGATAGTATT GTCATCAATA TGATCGATAA 361 GGAAGTCTCG ATCAAGATGA GTTGTCTTTG GAGCGAGAGC TTGTTGCTTA AAATTATGGA 421 GGCACTGACT GACCTACATA TGGATTGCCA TACAGTTCAG TCTTCCAACC TTGATGGGAT 481 TCTATCCATT GCTATCGAA Predicted gene structure (within gDNA segment 10963 to 12757): Exon 1 11563 11650 ( 88 n); cDNA 1 88 ( 88 n); score: 1.000 Intron 1 11651 11736 ( 86 n); Pd: 0.812 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 11737 12147 ( 411 n); cDNA 89 499 ( 411 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E236045+ 1.000 499 1.000 C PGS_C08SLe0084H03.1+_SGN-E236045+ (11563 11650,11737 12147) Alignment (genomic DNA sequence = upper lines): AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 11622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 60 TGCATCGATG CTGCCAACTA GTAGCAAGGT ACTGGAAGAT CTCCTCAAGT TTACATAGCT 11682 |||||||||| |||||||||| |||||||| TGCATCGATG CTGCCAACTA GTAGCAAG.. .......... .......... .......... 88 CCTGTTTGAT GACACATTAA TCAGAAATTG TGTTTTTCCC ATTGGTGTTT GCAGGTTGAC 11742 |||||| .......... .......... .......... .......... .......... ....GTTGAC 94 AAAATATCAC TACTCGATGA GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG 11802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATATCAC TACTCGATGA GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG 154 GAGCTGGAGG CGAGATCAGC AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT 11862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTGGAGG CGAGATCAGC AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT 214 TGTGGCACTA GCAAATTCAA TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT 11922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGCACTA GCAAATTCAA TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT 274 GATATGGATG AAATAGAACC TGAAAGCTCC AATGGATTAC TGAAATGTAG TTCAGCTGAT 11982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGGATG AAATAGAACC TGAAAGCTCC AATGGATTAC TGAAATGTAG TTCAGCTGAT 334 AGTATTGTCA TCAATATGAT CGATAAGGAA GTCTCGATCA AGATGAGTTG TCTTTGGAGC 12042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATTGTCA TCAATATGAT CGATAAGGAA GTCTCGATCA AGATGAGTTG TCTTTGGAGC 394 GAGAGCTTGT TGCTTAAAAT TATGGAGGCA CTGACTGACC TACATATGGA TTGCCATACA 12102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCTTGT TGCTTAAAAT TATGGAGGCA CTGACTGACC TACATATGGA TTGCCATACA 454 GTTCAGTCTT CCAACCTTGA TGGGATTCTA TCCATTGCTA TCGAA 12147 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTTCAGTCTT CCAACCTTGA TGGGATTCTA TCCATTGCTA TCGAA 499 hqPGS_C08SLe0084H03.1+_SGN-E236045+ (11563 11650,11737 12147) ******************************************************************************** EST sequence 9 +strand 344 n (File: SGN-E228066+) 1 AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 61 TGCATCGATG CTGCCAACTA GTAGCAAGGT TGACAAAATA TCACTACTCG ATGAGACAAT 121 AGAATACATG AAAGAGCTTG AAAGGAGAGT TCAGGAGCTG GAGGCGAGAT CAGCAAGACG 181 ATCAAATGAT ACTGCAGAGC AGACATCTGA TAATTGTGGC ACTAGCAAAT TCAATGACAT 241 CAGGGGATCA CTACCGAACA AAAGGAAGGC ATGTGATATG GATGAAATAG AACCTGAAAG 301 CTCCAATGGA TTACTGAAAT GTAGGTCAGC TGATAGTATT GTCA Predicted gene structure (within gDNA segment 10963 to 12602): Exon 1 11563 11650 ( 88 n); cDNA 1 88 ( 88 n); score: 1.000 Intron 1 11651 11736 ( 86 n); Pd: 0.812 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 11737 11992 ( 256 n); cDNA 89 344 ( 256 n); score: 0.996 MATCH C08SLe0084H03.1+ SGN-E228066+ 0.997 344 1.000 C PGS_C08SLe0084H03.1+_SGN-E228066+ (11563 11650,11737 11992) Alignment (genomic DNA sequence = upper lines): AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 11622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCGTGTT ATTTCAGAGA GAAGGCGAAG AGAAAAGATA AATGAGAGAT TTATGCATCT 60 TGCATCGATG CTGCCAACTA GTAGCAAGGT ACTGGAAGAT CTCCTCAAGT TTACATAGCT 11682 |||||||||| |||||||||| |||||||| TGCATCGATG CTGCCAACTA GTAGCAAG.. .......... .......... .......... 88 CCTGTTTGAT GACACATTAA TCAGAAATTG TGTTTTTCCC ATTGGTGTTT GCAGGTTGAC 11742 |||||| .......... .......... .......... .......... .......... ....GTTGAC 94 AAAATATCAC TACTCGATGA GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG 11802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATATCAC TACTCGATGA GACAATAGAA TACATGAAAG AGCTTGAAAG GAGAGTTCAG 154 GAGCTGGAGG CGAGATCAGC AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT 11862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTGGAGG CGAGATCAGC AAGACGATCA AATGATACTG CAGAGCAGAC ATCTGATAAT 214 TGTGGCACTA GCAAATTCAA TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT 11922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGCACTA GCAAATTCAA TGACATCAGG GGATCACTAC CGAACAAAAG GAAGGCATGT 274 GATATGGATG AAATAGAACC TGAAAGCTCC AATGGATTAC TGAAATGTAG TTCAGCTGAT 11982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GATATGGATG AAATAGAACC TGAAAGCTCC AATGGATTAC TGAAATGTAG GTCAGCTGAT 334 AGTATTGTCA 11992 |||||||||| AGTATTGTCA 344 hqPGS_C08SLe0084H03.1+_SGN-E228066+ (11563 11650,11737 11992) ******************************************************************************** EST sequence 84 +strand 393 n (File: SGN-E378593+) 1 GTGTTATTTC AGAGAGAAGG CGAAGAGAAA AGATAAATGA GAGATTTATG CATCTTGCAT 61 CGATGCTGCC AACTAGTAGC AAGGTTGACA AAATATCACT ACTCGATGAG ACAATAGAAT 121 ACATGAAAGA GCTTGAAAGG AGAGTTCAGG AGCTGGAGGC GAGATCAGCA AGACGATCAA 181 ATGATACTGC AGAGCAGACA TCTGATAATT GTGGCACTAG CAAATTCAAT GACATCAGGG 241 GATCACTACC GAACAAAAGG AAGGCATGTG ATATGGATGA AATAGAACCT GAAAGCTCCA 301 ATGGATTACT GAAATGTAGT TCAGCTGATA GTATTGTCAT CAATATGATC GATAAGGAAG 361 TCTCGATNCA GATGAGTTGT CTTTGGAGCG AGA Predicted gene structure (within gDNA segment 10968 to 12656): Exon 1 11568 11650 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 11651 11736 ( 86 n); Pd: 0.812 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 11737 12046 ( 310 n); cDNA 84 393 ( 310 n); score: 0.994 MATCH C08SLe0084H03.1+ SGN-E378593+ 0.995 393 1.000 C PGS_C08SLe0084H03.1+_SGN-E378593+ (11568 11650,11737 12046) Alignment (genomic DNA sequence = upper lines): GTGTTATTTC AGAGAGAAGG CGAAGAGAAA AGATAAATGA GAGATTTATG CATCTTGCAT 11627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTATTTC AGAGAGAAGG CGAAGAGAAA AGATAAATGA GAGATTTATG CATCTTGCAT 60 CGATGCTGCC AACTAGTAGC AAGGTACTGG AAGATCTCCT CAAGTTTACA TAGCTCCTGT 11687 |||||||||| |||||||||| ||| CGATGCTGCC AACTAGTAGC AAG....... .......... .......... .......... 83 TTGATGACAC ATTAATCAGA AATTGTGTTT TTCCCATTGG TGTTTGCAGG TTGACAAAAT 11747 | |||||||||| .......... .......... .......... .......... .........G TTGACAAAAT 94 ATCACTACTC GATGAGACAA TAGAATACAT GAAAGAGCTT GAAAGGAGAG TTCAGGAGCT 11807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACTACTC GATGAGACAA TAGAATACAT GAAAGAGCTT GAAAGGAGAG TTCAGGAGCT 154 GGAGGCGAGA TCAGCAAGAC GATCAAATGA TACTGCAGAG CAGACATCTG ATAATTGTGG 11867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGCGAGA TCAGCAAGAC GATCAAATGA TACTGCAGAG CAGACATCTG ATAATTGTGG 214 CACTAGCAAA TTCAATGACA TCAGGGGATC ACTACCGAAC AAAAGGAAGG CATGTGATAT 11927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTAGCAAA TTCAATGACA TCAGGGGATC ACTACCGAAC AAAAGGAAGG CATGTGATAT 274 GGATGAAATA GAACCTGAAA GCTCCAATGG ATTACTGAAA TGTAGTTCAG CTGATAGTAT 11987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGAAATA GAACCTGAAA GCTCCAATGG ATTACTGAAA TGTAGTTCAG CTGATAGTAT 334 TGTCATCAAT ATGATCGATA AGGAAGTCTC GATCAAGATG AGTTGTCTTT GGAGCGAGA 12046 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| ||||||||| TGTCATCAAT ATGATCGATA AGGAAGTCTC GATNCAGATG AGTTGTCTTT GGAGCGAGA 393 hqPGS_C08SLe0084H03.1+_SGN-E378593+ (11568 11650,11737 12046) ******************************************************************************** EST sequence 15 +strand 636 n (File: SGN-E250879+) 1 CTTTCTAGAG GTTGATTACT CCGTTATTTT GAAGAGGCCT AATTATGTCT CCAACGATGC 61 AAAAAATGAC ACGAATATCG GTAGCCAAAA GCCTGATCAT AATGCACTTG AAAATGATGC 121 TTATCCAGTT GAAATAAATT CACCTCATGA TAGTTCAAAT GGTTTTGTCG CCAATCAAGA 181 GGCAGAAGAT TCACTGATGG TGGTAGACGG TATTGGGGAA ACTTCACAAG CTCAAAGCTG 241 GAGGTTCATG GATGATAATA TCAGTAATGG TGCGAATAAT TCCTTGAATT CCAGTGACTG 301 CATCTCTCAA AACAATGCAA ATTGTGAAAA GTTGTCCCCT CTTTCGAGTG GAGAGAAGGA 361 AACTAAGCCT TGCCCACTAG ACCGTCAAGA GAACGATCAG AAGAAACCGC ATCTTTTAGA 421 TCACCAAGGA GATGATGCTC AATATCAAGC TGTCCTTTCT ACTCTTTTAA AGAGTTCTGA 481 CCAATTAACT TTGGGACCAC ATTTTAGAAA TATGAATAAA AAGTCAAGTT TTGCTAGTTG 541 GAAAACCGAT ATTCAGATGC CGAGATTTGG AACTGCACAA AAACTATTGA AGAAGGTACT 601 TCTTGAAGTT CCTAGAATGC ATGCTGGTGT TATACA Predicted gene structure (within gDNA segment 10261 to 12106): Exon 1 10861 11496 ( 636 n); cDNA 1 636 ( 636 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E250879+ 1.000 636 1.000 C PGS_C08SLe0084H03.1+_SGN-E250879+ (10861 11496) Alignment (genomic DNA sequence = upper lines): CTTTCTAGAG GTTGATTACT CCGTTATTTT GAAGAGGCCT AATTATGTCT CCAACGATGC 10920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTAGAG GTTGATTACT CCGTTATTTT GAAGAGGCCT AATTATGTCT CCAACGATGC 60 AAAAAATGAC ACGAATATCG GTAGCCAAAA GCCTGATCAT AATGCACTTG AAAATGATGC 10980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAATGAC ACGAATATCG GTAGCCAAAA GCCTGATCAT AATGCACTTG AAAATGATGC 120 TTATCCAGTT GAAATAAATT CACCTCATGA TAGTTCAAAT GGTTTTGTCG CCAATCAAGA 11040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCCAGTT GAAATAAATT CACCTCATGA TAGTTCAAAT GGTTTTGTCG CCAATCAAGA 180 GGCAGAAGAT TCACTGATGG TGGTAGACGG TATTGGGGAA ACTTCACAAG CTCAAAGCTG 11100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGAAGAT TCACTGATGG TGGTAGACGG TATTGGGGAA ACTTCACAAG CTCAAAGCTG 240 GAGGTTCATG GATGATAATA TCAGTAATGG TGCGAATAAT TCCTTGAATT CCAGTGACTG 11160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTTCATG GATGATAATA TCAGTAATGG TGCGAATAAT TCCTTGAATT CCAGTGACTG 300 CATCTCTCAA AACAATGCAA ATTGTGAAAA GTTGTCCCCT CTTTCGAGTG GAGAGAAGGA 11220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTCTCAA AACAATGCAA ATTGTGAAAA GTTGTCCCCT CTTTCGAGTG GAGAGAAGGA 360 AACTAAGCCT TGCCCACTAG ACCGTCAAGA GAACGATCAG AAGAAACCGC ATCTTTTAGA 11280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAGCCT TGCCCACTAG ACCGTCAAGA GAACGATCAG AAGAAACCGC ATCTTTTAGA 420 TCACCAAGGA GATGATGCTC AATATCAAGC TGTCCTTTCT ACTCTTTTAA AGAGTTCTGA 11340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCAAGGA GATGATGCTC AATATCAAGC TGTCCTTTCT ACTCTTTTAA AGAGTTCTGA 480 CCAATTAACT TTGGGACCAC ATTTTAGAAA TATGAATAAA AAGTCAAGTT TTGCTAGTTG 11400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATTAACT TTGGGACCAC ATTTTAGAAA TATGAATAAA AAGTCAAGTT TTGCTAGTTG 540 GAAAACCGAT ATTCAGATGC CGAGATTTGG AACTGCACAA AAACTATTGA AGAAGGTACT 11460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAACCGAT ATTCAGATGC CGAGATTTGG AACTGCACAA AAACTATTGA AGAAGGTACT 600 TCTTGAAGTT CCTAGAATGC ATGCTGGTGT TATACA 11496 |||||||||| |||||||||| |||||||||| |||||| TCTTGAAGTT CCTAGAATGC ATGCTGGTGT TATACA 636 hqPGS_C08SLe0084H03.1+_SGN-E250879+ (10861 11496) ******************************************************************************** EST sequence 38 +strand 428 n (File: SGN-E253025+) 1 AGCTCAAAAC TGGAGGTTCA TGGATGATAA TATCACTAAT GGTGCGAATA ATTCCTTGAA 61 TTCCAGTGAC TGCATCTCTC AAAACAATGC AAATTGTGAA AAGTTGTCCC CTCTTTCGAG 121 TGGAGAGAAG GAAACTAAGC CTTGCCCACT AGACCGTCAA GAGAACGATC AGAAGAAACC 181 GCATCTTTTA GATCACCAAG GAGATGATGC TCAATATCAA GCTGTCCTTT CTACTCTTTT 241 AAAGAGTTCT GACCAATTAA CTTTGGGACC ACATTTTAGA AATATGAATA AAAAGTCAAG 301 TTTTGCTAGT TGGAAAACCG ATATTCAGAT GCCGAGATTT GGAACTGCAC AAAAACTATT 361 GAAGAAGGTA CTTCTTGAAG TTCCTAGAAT GCATGCTGGT GTTATACATA AATTCAACAG 421 AGAAAATG Predicted gene structure (within gDNA segment 10408 to 12234): Exon 1 11089 11516 ( 428 n); cDNA 1 428 ( 428 n); score: 0.993 MATCH C08SLe0084H03.1+ SGN-E253025+ 0.993 428 1.000 C PGS_C08SLe0084H03.1+_SGN-E253025+ (11089 11516) Alignment (genomic DNA sequence = upper lines): AGCTCAAAGC TGGAGGTTCA TGGATGATAA TATCAGTAAT GGTGCGAATA ATTCCTTGAA 11148 |||||||| | |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AGCTCAAAAC TGGAGGTTCA TGGATGATAA TATCACTAAT GGTGCGAATA ATTCCTTGAA 60 TTCCAGTGAC TGCATCTCTC AAAACAATGC AAATTGTGAA AAGTTGTCCC CTCTTTCGAG 11208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAGTGAC TGCATCTCTC AAAACAATGC AAATTGTGAA AAGTTGTCCC CTCTTTCGAG 120 TGGAGAGAAG GAAACTAAGC CTTGCCCACT AGACCGTCAA GAGAACGATC AGAAGAAACC 11268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGAGAAG GAAACTAAGC CTTGCCCACT AGACCGTCAA GAGAACGATC AGAAGAAACC 180 GCATCTTTTA GATCACCAAG GAGATGATGC TCAATATCAA GCTGTCCTTT CTACTCTTTT 11328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCTTTTA GATCACCAAG GAGATGATGC TCAATATCAA GCTGTCCTTT CTACTCTTTT 240 AAAGAGTTCT GACCAATTAA CTTTGGGACC ACATTTTAGA AATATGAATA AAAAGTCAAG 11388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGTTCT GACCAATTAA CTTTGGGACC ACATTTTAGA AATATGAATA AAAAGTCAAG 300 TTTTGCTAGT TGGAAAACCG ATATTCAGAT GCCGAGATTT GGAACTGCAC AAAAACTATT 11448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGCTAGT TGGAAAACCG ATATTCAGAT GCCGAGATTT GGAACTGCAC AAAAACTATT 360 GAAGAAGGTA CTTCTTGAAG TTCCTAGAAT GCATGCTGGT GTTATACATA AATTCAGCAG 11508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GAAGAAGGTA CTTCTTGAAG TTCCTAGAAT GCATGCTGGT GTTATACATA AATTCAACAG 420 AGAAAATG 11516 |||||||| AGAAAATG 428 hqPGS_C08SLe0084H03.1+_SGN-E253025+ (11089 11516) ******************************************************************************** EST sequence 255 -strand 476 n (File: SGN-E234570-) 1 CAATGGATTA CTGAAATGTA GTTCAGCTGA TAGTATTGTC ATCAATATGA TCGATAAGGA 61 AGTCTCGATC AAGATGAGTT GTCTTTGGAG CGAGAGCTTG TTGCTTAAAA TTATGGAGGC 121 ACTGACTGAC CTACATATGG ATTGCCATAC AGTTCAGTCT TCCAACCTTG ATGGGATTCT 181 ATCCATTGCT ATCGAATCCA AGTCAACCGG ATCGAAAACA CTAGCAGTCG GAACAATTAG 241 AGAAGCACTT CAGAGAGTAG TATGGAAATC TTGAAGATTA GTCAGTCAAG GTTGGTCAAT 301 TAAGCCCATA TGAAAAAGAG CTTGGTCAGT CCTGTCCTTA GTGGATAGTT AAAGCTTGTG 361 TATAGTATTG TACTTATGCT TTTTTCGAAG ATTTGAAAAG CCTAGGGAAA AAGTAGTAAT 421 TTGGAGTAGC TTTCTCCTAA TGCATCATCC TCTTTCATGA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 11342 to 13588): Exon 1 11952 12153 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 12154 12570 ( 417 n); Pd: 0.928 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 12571 12827 ( 257 n); cDNA 203 459 ( 257 n); score: 1.000 PPA cDNA 460 476 MATCH C08SLe0084H03.1+ SGN-E234570- 1.000 459 0.964 C PGS_C08SLe0084H03.1+_SGN-E234570- (11952 12153,12571 12827) Alignment (genomic DNA sequence = upper lines): CAATGGATTA CTGAAATGTA GTTCAGCTGA TAGTATTGTC ATCAATATGA TCGATAAGGA 12011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGATTA CTGAAATGTA GTTCAGCTGA TAGTATTGTC ATCAATATGA TCGATAAGGA 60 AGTCTCGATC AAGATGAGTT GTCTTTGGAG CGAGAGCTTG TTGCTTAAAA TTATGGAGGC 12071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTCGATC AAGATGAGTT GTCTTTGGAG CGAGAGCTTG TTGCTTAAAA TTATGGAGGC 120 ACTGACTGAC CTACATATGG ATTGCCATAC AGTTCAGTCT TCCAACCTTG ATGGGATTCT 12131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGACTGAC CTACATATGG ATTGCCATAC AGTTCAGTCT TCCAACCTTG ATGGGATTCT 180 ATCCATTGCT ATCGAATCCA AGGTTTGTCA ACGCCGAGCT CTCTTTAATG GCCATAACCA 12191 |||||||||| |||||||||| || ATCCATTGCT ATCGAATCCA AG........ .......... .......... .......... 202 ATTCAAAAAA TTTGGCGCAA CTTATGAAAT ACTCCGTCCA TCCCAATTTA TATGGCACTG 12251 .......... .......... .......... .......... .......... .......... 202 TTTGACTTGG CACAAAGTTA AAGAAAGAAG GAAGACTTTT GAAATTTGTG GGCTTAAATA 12311 .......... .......... .......... .......... .......... .......... 202 CTTCTTGACC ATTTGTGACT ATAAATTTTC ATTAAGGGTA AAAAAAGAAT TTTAAAGTTA 12371 .......... .......... .......... .......... .......... .......... 202 AATTGTTCCC AATTATGGAA AGGAGACTTT TCTTTTGGGA CGGACTATGA AGGAAAGTGT 12431 .......... .......... .......... .......... .......... .......... 202 GCTATATAAA TTGGAACAGA GGGAGTACTA GCTGACATAC TCTCATGTGT TTGTTTCCAA 12491 .......... .......... .......... .......... .......... .......... 202 TCTTATTATG TTAGATACTC TGTTTATATT GTAACTAAAG ATTCATACTC ATTCTTCTTT 12551 .......... .......... .......... .......... .......... .......... 202 GGTATCTTCT CTGTTGCAGT CAACCGGATC GAAAACACTA GCAGTCGGAA CAATTAGAGA 12611 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T CAACCGGATC GAAAACACTA GCAGTCGGAA CAATTAGAGA 243 AGCACTTCAG AGAGTAGTAT GGAAATCTTG AAGATTAGTC AGTCAAGGTT GGTCAATTAA 12671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACTTCAG AGAGTAGTAT GGAAATCTTG AAGATTAGTC AGTCAAGGTT GGTCAATTAA 303 GCCCATATGA AAAAGAGCTT GGTCAGTCCT GTCCTTAGTG GATAGTTAAA GCTTGTGTAT 12731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCATATGA AAAAGAGCTT GGTCAGTCCT GTCCTTAGTG GATAGTTAAA GCTTGTGTAT 363 AGTATTGTAC TTATGCTTTT TTCGAAGATT TGAAAAGCCT AGGGAAAAAG TAGTAATTTG 12791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATTGTAC TTATGCTTTT TTCGAAGATT TGAAAAGCCT AGGGAAAAAG TAGTAATTTG 423 GAGTAGCTTT CTCCTAATGC ATCATCCTCT TTCATG 12827 |||||||||| |||||||||| |||||||||| |||||| GAGTAGCTTT CTCCTAATGC ATCATCCTCT TTCATG 459 hqPGS_C08SLe0084H03.1+_SGN-E234570- (11952 12153,12571 12827) ******************************************************************************** EST sequence 256 -strand 453 n (File: SGN-E235242-) 1 CAGCTGATAG TATTGTCATC AATATGATCG ATAAGGAAGT CTCGATCAAG ATGAGTTGTC 61 TTTGGAGCGA GAGCTTGTTG CTTAAAATTA TGGAGGCACT GACTGACCTA CATATGGATT 121 GCCATACAGT TCAGTCTTCC AACCTTGATG GGATTCTATC CATTGCTATC GAATCCAAGT 181 CAACCGGATC GAAAACACTA GCAGTCGGAA CAATTAGAGA AGCACTTCAG AGAGTAGTAT 241 GGAAATCTTG AAGATTAGTC AGTCAAGGTT GGTCAATTAA GCCCATATGA AAAAGAGCTT 301 GGTCAGTCCT GTCCTTAGTG GATAGTTAAA GCTTGTGTAT AGTATTGTAC TTATGCTTTT 361 TTCGAAGATT TGAAAAGCCT AGGGAAAAAG TAGTAATTTG GAGTAGCTTT CTCCTAATGC 421 ATCATCCTCT TTCATGAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 11365 to 13588): Exon 1 11975 12153 ( 179 n); cDNA 1 179 ( 179 n); score: 1.000 Intron 1 12154 12570 ( 417 n); Pd: 0.928 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 12571 12827 ( 257 n); cDNA 180 436 ( 257 n); score: 1.000 PPA cDNA 437 453 MATCH C08SLe0084H03.1+ SGN-E235242- 1.000 436 0.962 C PGS_C08SLe0084H03.1+_SGN-E235242- (11975 12153,12571 12827) Alignment (genomic DNA sequence = upper lines): CAGCTGATAG TATTGTCATC AATATGATCG ATAAGGAAGT CTCGATCAAG ATGAGTTGTC 12034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGATAG TATTGTCATC AATATGATCG ATAAGGAAGT CTCGATCAAG ATGAGTTGTC 60 TTTGGAGCGA GAGCTTGTTG CTTAAAATTA TGGAGGCACT GACTGACCTA CATATGGATT 12094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAGCGA GAGCTTGTTG CTTAAAATTA TGGAGGCACT GACTGACCTA CATATGGATT 120 GCCATACAGT TCAGTCTTCC AACCTTGATG GGATTCTATC CATTGCTATC GAATCCAAGG 12154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCCATACAGT TCAGTCTTCC AACCTTGATG GGATTCTATC CATTGCTATC GAATCCAAG. 179 TTTGTCAACG CCGAGCTCTC TTTAATGGCC ATAACCAATT CAAAAAATTT GGCGCAACTT 12214 .......... .......... .......... .......... .......... .......... 179 ATGAAATACT CCGTCCATCC CAATTTATAT GGCACTGTTT GACTTGGCAC AAAGTTAAAG 12274 .......... .......... .......... .......... .......... .......... 179 AAAGAAGGAA GACTTTTGAA ATTTGTGGGC TTAAATACTT CTTGACCATT TGTGACTATA 12334 .......... .......... .......... .......... .......... .......... 179 AATTTTCATT AAGGGTAAAA AAAGAATTTT AAAGTTAAAT TGTTCCCAAT TATGGAAAGG 12394 .......... .......... .......... .......... .......... .......... 179 AGACTTTTCT TTTGGGACGG ACTATGAAGG AAAGTGTGCT ATATAAATTG GAACAGAGGG 12454 .......... .......... .......... .......... .......... .......... 179 AGTACTAGCT GACATACTCT CATGTGTTTG TTTCCAATCT TATTATGTTA GATACTCTGT 12514 .......... .......... .......... .......... .......... .......... 179 TTATATTGTA ACTAAAGATT CATACTCATT CTTCTTTGGT ATCTTCTCTG TTGCAGTCAA 12574 |||| .......... .......... .......... .......... .......... ......TCAA 183 CCGGATCGAA AACACTAGCA GTCGGAACAA TTAGAGAAGC ACTTCAGAGA GTAGTATGGA 12634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGATCGAA AACACTAGCA GTCGGAACAA TTAGAGAAGC ACTTCAGAGA GTAGTATGGA 243 AATCTTGAAG ATTAGTCAGT CAAGGTTGGT CAATTAAGCC CATATGAAAA AGAGCTTGGT 12694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTTGAAG ATTAGTCAGT CAAGGTTGGT CAATTAAGCC CATATGAAAA AGAGCTTGGT 303 CAGTCCTGTC CTTAGTGGAT AGTTAAAGCT TGTGTATAGT ATTGTACTTA TGCTTTTTTC 12754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCCTGTC CTTAGTGGAT AGTTAAAGCT TGTGTATAGT ATTGTACTTA TGCTTTTTTC 363 GAAGATTTGA AAAGCCTAGG GAAAAAGTAG TAATTTGGAG TAGCTTTCTC CTAATGCATC 12814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATTTGA AAAGCCTAGG GAAAAAGTAG TAATTTGGAG TAGCTTTCTC CTAATGCATC 423 ATCCTCTTTC ATG 12827 |||||||||| ||| ATCCTCTTTC ATG 436 hqPGS_C08SLe0084H03.1+_SGN-E235242- (11975 12153,12571 12827) ******************************************************************************** EST sequence 122 +strand 223 n (File: SGN-E240631+) 1 AAAATATCAC TACTCTGATG AGACAATACA ATACATGAAA GAGCTTGATA GGAGAGTTCA 61 GGAGCTGGAG GCGAGATCAG CAAGACGATC AAATGATACT GCAGAGCAGA CATCTGATAA 121 TTGTGGCACT AGCAAATTCA ATGACATCAG GGGATCACTA CCGAACAAAA GGAATGCATG 181 TGATATGGAT GAAATATAAC CTGAAAGCTC CAATGGATTA CTG Predicted gene structure (within gDNA segment 10881 to 12574): Exon 1 11743 11964 ( 222 n); cDNA 1 223 ( 223 n); score: 0.971 MATCH C08SLe0084H03.1+ SGN-E240631+ 0.971 222 0.996 C PGS_C08SLe0084H03.1+_SGN-E240631+ (11743 11964) Alignment (genomic DNA sequence = upper lines): AAAATATCAC TACTC-GATG AGACAATAGA ATACATGAAA GAGCTTGAAA GGAGAGTTCA 11801 |||||||||| ||||| |||| |||||||| | |||||||||| |||||||| | |||||||||| AAAATATCAC TACTCTGATG AGACAATACA ATACATGAAA GAGCTTGATA GGAGAGTTCA 60 GGAGCTGGAG GCGAGATCAG CAAGACGATC AAATGATACT GCAGAGCAGA CATCTGATAA 11861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCTGGAG GCGAGATCAG CAAGACGATC AAATGATACT GCAGAGCAGA CATCTGATAA 120 TTGTGGCACT AGCAAATTCA ATGACATCAG GGGATCACTA CCGAACAAAA GGAAGGCATG 11921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TTGTGGCACT AGCAAATTCA ATGACATCAG GGGATCACTA CCGAACAAAA GGAATGCATG 180 TGATATGGAT GAAATAGAAC CTGAAAGCTC CAATGGATTA CTG 11964 |||||||||| |||||| ||| |||||||||| |||||||||| ||| TGATATGGAT GAAATATAAC CTGAAAGCTC CAATGGATTA CTG 223 hqPGS_C08SLe0084H03.1+_SGN-E240631+ (11743 11964) ******************************************************************************** EST sequence 205 -strand 415 n (File: SGN-E217696-) 1 ATCCAAGTCA ACCGGATCGA AAACACTAGC AGTCGGAACA ATTAGAGAAG CACTTCAGAG 61 AGTAGTATGG AAATCTTGAA GATTAGTCAG TCAAGGTTGG TCAATTAAGC CCATATGAAA 121 AAGAGCTTGG TCAGTCCTGT CCTTAGTGGA TAGTTAAAGC TTGTGTATAG TATTGTACTT 181 ATGCTTTTTT CGAAGATTTG AAAAGCCTAG GGAAAAAGTA GTAATTTGGA GTAGCTTTCT 241 CCTAATGCAT CATCCTCTTT CATGATCATC ACTTTTTTGT GGTCCTCTAA AAAGTTCATG 301 AAAGTAAAGT TGCTGAATCT TGCTATTGAT TTCTGTCCCC ACTAACAAAG TTGAAAGGTC 361 ATCTCAGGAA TGGAAAAAAG TTTGCTGTTT GCTTTAAAAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 11909 to 13740): Exon 1 12147 12153 ( 7 n); cDNA 1 7 ( 7 n); score: 1.000 Intron 1 12154 12570 ( 417 n); Pd: 0.928 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 12571 12953 ( 383 n); cDNA 8 390 ( 383 n); score: 1.000 PPA cDNA 396 415 MATCH C08SLe0084H03.1+ SGN-E217696- 1.000 390 0.940 C PGS_C08SLe0084H03.1+_SGN-E217696- (12147 12153,12571 12953) Alignment (genomic DNA sequence = upper lines): ATCCAAGGTT TGTCAACGCC GAGCTCTCTT TAATGGCCAT AACCAATTCA AAAAATTTGG 12206 ||||||| ATCCAAG... .......... .......... .......... .......... .......... 7 CGCAACTTAT GAAATACTCC GTCCATCCCA ATTTATATGG CACTGTTTGA CTTGGCACAA 12266 .......... .......... .......... .......... .......... .......... 7 AGTTAAAGAA AGAAGGAAGA CTTTTGAAAT TTGTGGGCTT AAATACTTCT TGACCATTTG 12326 .......... .......... .......... .......... .......... .......... 7 TGACTATAAA TTTTCATTAA GGGTAAAAAA AGAATTTTAA AGTTAAATTG TTCCCAATTA 12386 .......... .......... .......... .......... .......... .......... 7 TGGAAAGGAG ACTTTTCTTT TGGGACGGAC TATGAAGGAA AGTGTGCTAT ATAAATTGGA 12446 .......... .......... .......... .......... .......... .......... 7 ACAGAGGGAG TACTAGCTGA CATACTCTCA TGTGTTTGTT TCCAATCTTA TTATGTTAGA 12506 .......... .......... .......... .......... .......... .......... 7 TACTCTGTTT ATATTGTAAC TAAAGATTCA TACTCATTCT TCTTTGGTAT CTTCTCTGTT 12566 .......... .......... .......... .......... .......... .......... 7 GCAGTCAACC GGATCGAAAA CACTAGCAGT CGGAACAATT AGAGAAGCAC TTCAGAGAGT 12626 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCAACC GGATCGAAAA CACTAGCAGT CGGAACAATT AGAGAAGCAC TTCAGAGAGT 63 AGTATGGAAA TCTTGAAGAT TAGTCAGTCA AGGTTGGTCA ATTAAGCCCA TATGAAAAAG 12686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGGAAA TCTTGAAGAT TAGTCAGTCA AGGTTGGTCA ATTAAGCCCA TATGAAAAAG 123 AGCTTGGTCA GTCCTGTCCT TAGTGGATAG TTAAAGCTTG TGTATAGTAT TGTACTTATG 12746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGGTCA GTCCTGTCCT TAGTGGATAG TTAAAGCTTG TGTATAGTAT TGTACTTATG 183 CTTTTTTCGA AGATTTGAAA AGCCTAGGGA AAAAGTAGTA ATTTGGAGTA GCTTTCTCCT 12806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTCGA AGATTTGAAA AGCCTAGGGA AAAAGTAGTA ATTTGGAGTA GCTTTCTCCT 243 AATGCATCAT CCTCTTTCAT GATCATCACT TTTTTGTGGT CCTCTAAAAA GTTCATGAAA 12866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCATCAT CCTCTTTCAT GATCATCACT TTTTTGTGGT CCTCTAAAAA GTTCATGAAA 303 GTAAAGTTGC TGAATCTTGC TATTGATTTC TGTCCCCACT AACAAAGTTG AAAGGTCATC 12926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAAGTTGC TGAATCTTGC TATTGATTTC TGTCCCCACT AACAAAGTTG AAAGGTCATC 363 TCAGGAATGG AAAAAAGTTT GCTGTTT 12953 |||||||||| |||||||||| ||||||| TCAGGAATGG AAAAAAGTTT GCTGTTT 390 hqPGS_C08SLe0084H03.1+_SGN-E217696- (12571 12953) ******************************************************************************** EST sequence 204 -strand 360 n (File: SGN-E217656-) 1 CAGAGAGTAG TATGGAAATC TTGAAGATTA GTCAGTCAAG GTTGGTCAAT TAAGCCCATA 61 TGAAAAAGAG CTTGGTCAGT CCTGTCCTTA GTGGATAGTT AAAGCTTGTG TATAGTATTG 121 TACTTATGCT TTTTTCGAAG ATTTGAAAAG CCTAGGGAAA AAGTAGTAAT TTGGAGTAGC 181 TTTCTCCTAA TGCATCATCC TCTTTCATGA TCATCACTTT TTTGTGGTCC TCTAAAAAGT 241 TCATGAAAGT AAAGTTGCTG AATCTTGCTA TTGATTTCTG TCCCCACTAA CAAAGTTGAA 301 AGGTCATCTC AGGAATGGAA AAAAGTTTGC TGTTTGCTTT AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 12009 to 13740): Exon 1 12619 12953 ( 335 n); cDNA 1 335 ( 335 n); score: 1.000 PPA cDNA 341 360 MATCH C08SLe0084H03.1+ SGN-E217656- 1.000 335 0.931 C PGS_C08SLe0084H03.1+_SGN-E217656- (12619 12953) Alignment (genomic DNA sequence = upper lines): CAGAGAGTAG TATGGAAATC TTGAAGATTA GTCAGTCAAG GTTGGTCAAT TAAGCCCATA 12678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGAGTAG TATGGAAATC TTGAAGATTA GTCAGTCAAG GTTGGTCAAT TAAGCCCATA 60 TGAAAAAGAG CTTGGTCAGT CCTGTCCTTA GTGGATAGTT AAAGCTTGTG TATAGTATTG 12738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGAG CTTGGTCAGT CCTGTCCTTA GTGGATAGTT AAAGCTTGTG TATAGTATTG 120 TACTTATGCT TTTTTCGAAG ATTTGAAAAG CCTAGGGAAA AAGTAGTAAT TTGGAGTAGC 12798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTATGCT TTTTTCGAAG ATTTGAAAAG CCTAGGGAAA AAGTAGTAAT TTGGAGTAGC 180 TTTCTCCTAA TGCATCATCC TCTTTCATGA TCATCACTTT TTTGTGGTCC TCTAAAAAGT 12858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCCTAA TGCATCATCC TCTTTCATGA TCATCACTTT TTTGTGGTCC TCTAAAAAGT 240 TCATGAAAGT AAAGTTGCTG AATCTTGCTA TTGATTTCTG TCCCCACTAA CAAAGTTGAA 12918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGAAAGT AAAGTTGCTG AATCTTGCTA TTGATTTCTG TCCCCACTAA CAAAGTTGAA 300 AGGTCATCTC AGGAATGGAA AAAAGTTTGC TGTTT 12953 |||||||||| |||||||||| |||||||||| ||||| AGGTCATCTC AGGAATGGAA AAAAGTTTGC TGTTT 335 hqPGS_C08SLe0084H03.1+_SGN-E217656- (12619 12953) ******************************************************************************** EST sequence 184 +strand 671 n (File: SGN-E373064+) 1 AGGCTGGAAC ATGGAAGATG TTCTGGAGGA AGAAATTAAA GTAATTAAAG CTATGGTAGG 61 ACCTGAAGAT CATGTGATTT GTGCTTTATC TGGTGGTGTT GATTCCACAG TTGCAGCTAC 121 CGTGGTACAC AAGGCTATTG GAGACAGGCT TCACTGTGTT TTTGTTGATA ATGGTCTTTT 181 AAGGTACAAG GAGAGAGAAA GAGTGATGGC AACCTTTGAG AGTGACCTTC ATTTGCCCGT 241 TACCTGCGTT GATGCTACAG AAGAATTTCT CAGCAAACTA AAAGGTGTGA CAGAGCCTGA 301 AATGAAAAGG AAAATTATTG GGAAGGAGTT CATCAACATA TTTGATATTT TCGCCCATGA 361 TTTAGAGAAA AAAGTGGGAA AGAAACCTGC TTACCTAGTC CAAGGAACAT TGTATCCTGA 421 TGTAATAGAG TCGTGTCCCC CACCTGGAAG TGGAAGAACA CATTCACATA CGATCAAGAG 481 CCATCATAAT GTTGGAGGGC TCCCAAAGGA CATGAAGCTG AAGCTCATCG AGCCACTGAA 541 ACTTCTGTTC AAGGATGAGG TTCGTGCAAT GGGAAAGATT ATGAATATCC CTGTGGCTTT 601 TCTCAGGCGT CACCCATTTC CTGGTCCGGG ACTTGCTGTC CGAATTCCAG GAGATGTCAC 661 AGCAGGGAAT T Predicted gene structure (within gDNA segment 16445 to 14268): Exon 1 15845 15663 ( 183 n); cDNA 1 183 ( 183 n); score: 1.000 Intron 1 15662 15468 ( 195 n); Pd: 1.000 (s: 1.00), Pa: 0.899 (s: 1.00) Exon 2 15467 15092 ( 376 n); cDNA 184 559 ( 376 n); score: 1.000 Intron 2 15091 14990 ( 102 n); Pd: 0.995 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 14989 14878 ( 112 n); cDNA 560 671 ( 112 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E373064+ 1.000 671 1.000 C PGS_C08SLe0084H03.1-_SGN-E373064+ (15845 15663,15467 15092,14989 14878) Alignment (genomic DNA sequence = upper lines): AGGCTGGAAC ATGGAAGATG TTCTGGAGGA AGAAATTAAA GTAATTAAAG CTATGGTAGG 15786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTGGAAC ATGGAAGATG TTCTGGAGGA AGAAATTAAA GTAATTAAAG CTATGGTAGG 60 ACCTGAAGAT CATGTGATTT GTGCTTTATC TGGTGGTGTT GATTCCACAG TTGCAGCTAC 15726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGAAGAT CATGTGATTT GTGCTTTATC TGGTGGTGTT GATTCCACAG TTGCAGCTAC 120 CGTGGTACAC AAGGCTATTG GAGACAGGCT TCACTGTGTT TTTGTTGATA ATGGTCTTTT 15666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGTACAC AAGGCTATTG GAGACAGGCT TCACTGTGTT TTTGTTGATA ATGGTCTTTT 180 AAGGCAAGTC TATAGTCTTG CCACTTCTCT ATAGCTGCTG ATTATCTCAT CAAATAGTAA 15606 ||| AAG....... .......... .......... .......... .......... .......... 183 TACCACAAAC TGATTAAAAA ATAAAAGTTT ATAAGAACCC AGCAAAAGTT GGAGTTTTCT 15546 .......... .......... .......... .......... .......... .......... 183 GTTCACTCGG TTAATCCATT AGCGACTGCT TCATACCCAT GACGGTTTTG ACATGGGTTT 15486 .......... .......... .......... .......... .......... .......... 183 TGCATCATCT TTTTTTAGGT ACAAGGAGAG AGAAAGAGTG ATGGCAACCT TTGAGAGTGA 15426 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT ACAAGGAGAG AGAAAGAGTG ATGGCAACCT TTGAGAGTGA 225 CCTTCATTTG CCCGTTACCT GCGTTGATGC TACAGAAGAA TTTCTCAGCA AACTAAAAGG 15366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCATTTG CCCGTTACCT GCGTTGATGC TACAGAAGAA TTTCTCAGCA AACTAAAAGG 285 TGTGACAGAG CCTGAAATGA AAAGGAAAAT TATTGGGAAG GAGTTCATCA ACATATTTGA 15306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAG CCTGAAATGA AAAGGAAAAT TATTGGGAAG GAGTTCATCA ACATATTTGA 345 TATTTTCGCC CATGATTTAG AGAAAAAAGT GGGAAAGAAA CCTGCTTACC TAGTCCAAGG 15246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTCGCC CATGATTTAG AGAAAAAAGT GGGAAAGAAA CCTGCTTACC TAGTCCAAGG 405 AACATTGTAT CCTGATGTAA TAGAGTCGTG TCCCCCACCT GGAAGTGGAA GAACACATTC 15186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATTGTAT CCTGATGTAA TAGAGTCGTG TCCCCCACCT GGAAGTGGAA GAACACATTC 465 ACATACGATC AAGAGCCATC ATAATGTTGG AGGGCTCCCA AAGGACATGA AGCTGAAGCT 15126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATACGATC AAGAGCCATC ATAATGTTGG AGGGCTCCCA AAGGACATGA AGCTGAAGCT 525 CATCGAGCCA CTGAAACTTC TGTTCAAGGA TGAGGTTTCA TTTTGTCTTC TACAACTTTT 15066 |||||||||| |||||||||| |||||||||| |||| CATCGAGCCA CTGAAACTTC TGTTCAAGGA TGAG...... .......... .......... 559 GCATGCATCT CCTCCATACT ATTTTTCCAT TTCATTCCAG ACTGATTTGA ACTATTGTAC 15006 .......... .......... .......... .......... .......... .......... 559 TCCACTTATC TCGCAGGTTC GTGCAATGGG AAAGATTATG AATATCCCTG TGGCTTTTCT 14946 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTTC GTGCAATGGG AAAGATTATG AATATCCCTG TGGCTTTTCT 603 CAGGCGTCAC CCATTTCCTG GTCCGGGACT TGCTGTCCGA ATTCCAGGAG ATGTCACAGC 14886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGCGTCAC CCATTTCCTG GTCCGGGACT TGCTGTCCGA ATTCCAGGAG ATGTCACAGC 663 AGGGAATT 14878 |||||||| AGGGAATT 671 hqPGS_C08SLe0084H03.1-_SGN-E373064+ (15845 15663,15467 15092,14989 14878) ******************************************************************************** EST sequence 252 +strand 518 n (File: SGN-E292704+) 1 AGGCTGGAAC ATGGAAGATG TTCTGGAGGA AGAAATTAAA GTAATTAAAG CTATGGTAGG 61 ACCTGAAGAT CATGTGATTT GTGCTTTATC TGGTGGTGTT GATTCCACAG TTGCAGCTAC 121 CGTGGTACAC AAGGCTATTG GAGACAGGCT TCACTGTGTT TTTGTTGATA ATGGTCTTTT 181 AAGGTACAAG GAGAGAGAAA GAGTGATGGC AACCTTTGAG AGTGACCTTC ATTTGCCCGT 241 TACCTGCGTT GATGCTACAG AAGAATTTCT CAGCAAACTA AAAGGTGTGA CAGAGCCTGA 301 AATGAAAAGG AAAATTATTG GGAAGGAGTT CATCAACATA TTTGATATTT TCGCCCATGA 361 TTTAGAGAAA AAAGTGGGAA AGAAACCTGC TTACCTAGTC CAAGGAACAT TGTATCCTGA 421 TGTAATAGAG TCGTGTCCCC CACCTGGAAG TGGAAGAACA CATTCACATA CGATCAAGAG 481 CCATCATAAT GTTGGAGGGC TCCCAAAGGA CATGAAGC Predicted gene structure (within gDNA segment 16445 to 14523): Exon 1 15845 15663 ( 183 n); cDNA 1 183 ( 183 n); score: 1.000 Intron 1 15662 15468 ( 195 n); Pd: 1.000 (s: 1.00), Pa: 0.899 (s: 1.00) Exon 2 15467 15133 ( 335 n); cDNA 184 518 ( 335 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E292704+ 1.000 518 1.000 C PGS_C08SLe0084H03.1-_SGN-E292704+ (15845 15663,15467 15133) Alignment (genomic DNA sequence = upper lines): AGGCTGGAAC ATGGAAGATG TTCTGGAGGA AGAAATTAAA GTAATTAAAG CTATGGTAGG 15786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTGGAAC ATGGAAGATG TTCTGGAGGA AGAAATTAAA GTAATTAAAG CTATGGTAGG 60 ACCTGAAGAT CATGTGATTT GTGCTTTATC TGGTGGTGTT GATTCCACAG TTGCAGCTAC 15726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGAAGAT CATGTGATTT GTGCTTTATC TGGTGGTGTT GATTCCACAG TTGCAGCTAC 120 CGTGGTACAC AAGGCTATTG GAGACAGGCT TCACTGTGTT TTTGTTGATA ATGGTCTTTT 15666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGTACAC AAGGCTATTG GAGACAGGCT TCACTGTGTT TTTGTTGATA ATGGTCTTTT 180 AAGGCAAGTC TATAGTCTTG CCACTTCTCT ATAGCTGCTG ATTATCTCAT CAAATAGTAA 15606 ||| AAG....... .......... .......... .......... .......... .......... 183 TACCACAAAC TGATTAAAAA ATAAAAGTTT ATAAGAACCC AGCAAAAGTT GGAGTTTTCT 15546 .......... .......... .......... .......... .......... .......... 183 GTTCACTCGG TTAATCCATT AGCGACTGCT TCATACCCAT GACGGTTTTG ACATGGGTTT 15486 .......... .......... .......... .......... .......... .......... 183 TGCATCATCT TTTTTTAGGT ACAAGGAGAG AGAAAGAGTG ATGGCAACCT TTGAGAGTGA 15426 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT ACAAGGAGAG AGAAAGAGTG ATGGCAACCT TTGAGAGTGA 225 CCTTCATTTG CCCGTTACCT GCGTTGATGC TACAGAAGAA TTTCTCAGCA AACTAAAAGG 15366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCATTTG CCCGTTACCT GCGTTGATGC TACAGAAGAA TTTCTCAGCA AACTAAAAGG 285 TGTGACAGAG CCTGAAATGA AAAGGAAAAT TATTGGGAAG GAGTTCATCA ACATATTTGA 15306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAG CCTGAAATGA AAAGGAAAAT TATTGGGAAG GAGTTCATCA ACATATTTGA 345 TATTTTCGCC CATGATTTAG AGAAAAAAGT GGGAAAGAAA CCTGCTTACC TAGTCCAAGG 15246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTCGCC CATGATTTAG AGAAAAAAGT GGGAAAGAAA CCTGCTTACC TAGTCCAAGG 405 AACATTGTAT CCTGATGTAA TAGAGTCGTG TCCCCCACCT GGAAGTGGAA GAACACATTC 15186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATTGTAT CCTGATGTAA TAGAGTCGTG TCCCCCACCT GGAAGTGGAA GAACACATTC 465 ACATACGATC AAGAGCCATC ATAATGTTGG AGGGCTCCCA AAGGACATGA AGC 15133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ACATACGATC AAGAGCCATC ATAATGTTGG AGGGCTCCCA AAGGACATGA AGC 518 hqPGS_C08SLe0084H03.1-_SGN-E292704+ (15845 15663,15467 15133) ******************************************************************************** EST sequence 243 +strand 536 n (File: SGN-E320675+) 1 TCCTTTTTCC GGCAATGGAA CCTCTAACTC AGGCGAAGAA ATCCAACCTC GTACTCATCC 61 TAGATTACGG TTCTCAATAC ACCCATCTCA TCACTCGCCG AATTCGAAGT TTATCAGTTT 121 TCTCACTCTG TATCAATGGC ACTTCTTCGT TAGACTCCAT AACCGAGCTC AACCCTCGTG 181 TTATTATCCT TTCAGGTGGA CCTCACAGTG TCCACGCTGA CGGTGCGCCG TGTTTTCCTT 241 CTGGCTTTAT TGAGTATGTG GAGTCGCAAG GGATTCATGT GTTGGGGATT TGTTATGGGT 301 TGCAGTTGCT TGTACAGAAC CTTGGTGGAG TTGTGAAGGT TGGGGAGAAG CATGAGTATG 361 GGAGAATGGA AATTGAGGTT CAGAAGAATA GTGGGTTGTT TGGGAATAAG CAAATTGGGG 421 ATAAACAGGT TGTTTGGATG AGCCATGGTG ATGAGGCTGT GAATTGCCGG AAGGGGTTGA 481 GGGTGTGGCG AGGAGTAATC AGGGAGCTGT TGCTGCCATT GAGAATAGGG AAAAAA Predicted gene structure (within gDNA segment 17862 to 16116): Exon 1 17262 16726 ( 537 n); cDNA 1 536 ( 536 n); score: 0.994 MATCH C08SLe0084H03.1- SGN-E320675+ 0.994 537 1.002 C PGS_C08SLe0084H03.1-_SGN-E320675+ (17262 16726) Alignment (genomic DNA sequence = upper lines): TCCTTTTTCC GGCAATGGAA CCTCTAACTC AGGCGAAGAA ATCCAACCTC GTACTCATCC 17203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTTTTCC GGCAATGGAA CCTCTAACTC AGGCGAAGAA ATCCAACCTC GTACTCATCC 60 TAGATTACGG TTCTCAATAC ACCCATCTCA TCACTCGCCG AATTCGAAGT TTATCAGTTT 17143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATTACGG TTCTCAATAC ACCCATCTCA TCACTCGCCG AATTCGAAGT TTATCAGTTT 120 TCTCACTCTG TATCAATGGC ACTTCTTCGT TAGACTCCAT AACCGAGCTC AACCCTCGTG 17083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCACTCTG TATCAATGGC ACTTCTTCGT TAGACTCCAT AACCGAGCTC AACCCTCGTG 180 TTATTATCCT TTCAGGTGGA CCTCACAGTG TCCACGCTGA CGGTGCGCCG TGTTTTCCTT 17023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTATCCT TTCAGGTGGA CCTCACAGTG TCCACGCTGA CGGTGCGCCG TGTTTTCCTT 240 CTGGCTTTAT TGAGTATGTG GAGTCGCAAG GGATTCATGT GTTGGGGATT TGTTATGGGT 16963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCTTTAT TGAGTATGTG GAGTCGCAAG GGATTCATGT GTTGGGGATT TGTTATGGGT 300 TGCAGTTGCT TGTACAGAAC CTTGGTGGAG TTGTGAAGGT TGGGGAGAAG CATGAGTATG 16903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGTTGCT TGTACAGAAC CTTGGTGGAG TTGTGAAGGT TGGGGAGAAG CATGAGTATG 360 GGAGAATGGA AATTGAGGTT CAGAAGAATA GTGGGTTGTT TGGGAATAAG CAAATTGGGG 16843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAATGGA AATTGAGGTT CAGAAGAATA GTGGGTTGTT TGGGAATAAG CAAATTGGGG 420 ATAAACAGGT TGTTTGGATG AGCCATGGTG ATGAGGCTGT GAAATTGCCG GAAGGGTTTG 16783 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||| ||| ATAAACAGGT TGTTTGGATG AGCCATGGTG ATGAGGCTGT G-AATTGCCG GAAGGGGTTG 479 AGGTTGTGGC GAGGAGTAAT CAGGGAGCTG TTGCTGCCAT TGAGAATAGG GAAAAAA 16726 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGGGTGTGGC GAGGAGTAAT CAGGGAGCTG TTGCTGCCAT TGAGAATAGG GAAAAAA 536 hqPGS_C08SLe0084H03.1-_SGN-E320675+ (17262 16726) ******************************************************************************** EST sequence 253 +strand 662 n (File: SGN-E346504+) 1 ACATTATGGT TTTTCTCTTC TGGTGTCTGA ATCAACTTGC GTGCAGATTG ATTGATTAGA 61 TATCTGTTAT CTCCAACATC AGGGAAAAGT GTTCATTTGT GATGGAGAAA AAGAGATCAT 121 CAAGAAATCC ACATCAGATA GATAAGAGTC AGCTTAATTG TATGTGGGGA TTGATTAGTA 181 GCCTTTATTT TGGTCAAAAT CAGAGGAAAC AGAAGCTGCT GTCAAATGGG AAAGGTTCTA 241 CAAAGAATGT TATAGGCAAA AATTCAAGAA AGATTGATGC TTTAACTTAC TGTAGCGACC 301 AATTGTATGG CTATGAGGAT GGAGCTGAAG TGGAAGCTTT AGGAGTTCGT ACGGGTGATA 361 AAAGGATAAA GACTTCGATT CACGAAGAAA TTTCTGGTGA AATGCAGAAG AGCACTCAAA 421 TTATAGCCCG AAATGAGCAA CACGAAGAAG TAGATTATGG ACTATTTGAT CATATGATAA 481 GTAAATACAA GCCATCGCCA AAGAATGGCT GTAAGAATCA GTCACCTGTT TACGATTGGA 541 AGGATACTGA GACCAGGGAT ATTCAGCAGG CTTCAAGTTC AGCGGAAATG TCTATTCATA 601 AGTTAAAATT GGCATCCATA TTAGAAGCTA TCGGCAGTCA AATTCATCGA GAAGATGGAG 661 AT Predicted gene structure (within gDNA segment 25389 to 22684): Exon 1 24789 24708 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 24707 24599 ( 109 n); Pd: 0.971 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 2 24598 24426 ( 173 n); cDNA 83 255 ( 173 n); score: 1.000 Intron 2 24425 24289 ( 137 n); Pd: 0.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 24288 24227 ( 62 n); cDNA 256 317 ( 62 n); score: 1.000 Intron 3 24226 23675 ( 552 n); Pd: 0.946 (s: 1.00), Pa: 0.930 (s: 1.00) Exon 4 23674 23330 ( 345 n); cDNA 318 662 ( 345 n); score: 0.991 MATCH C08SLe0084H03.1- SGN-E346504+ 0.995 662 1.000 C PGS_C08SLe0084H03.1-_SGN-E346504+ (24789 24708,24598 24426,24288 24227,23674 23330) Alignment (genomic DNA sequence = upper lines): ACATTATGGT TTTTCTCTTC TGGTGTCTGA ATCAACTTGC GTGCAGATTG ATTGATTAGA 24730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTATGGT TTTTCTCTTC TGGTGTCTGA ATCAACTTGC GTGCAGATTG ATTGATTAGA 60 TATCTGTTAT CTCCAACATC AGGTATCAGT TAACTCAATA AATCAAGAAT TGTATATTTT 24670 |||||||||| |||||||||| || TATCTGTTAT CTCCAACATC AG........ .......... .......... .......... 82 AAGTCTTGTT TTGAGAATAA AGTTAGTAGC TTTATGGTTT CTTGATTTTT TGTGCCTAAA 24610 .......... .......... .......... .......... .......... .......... 82 TTTCAGTGTA GGGAAAAGTG TTCATTTGTG ATGGAGAAAA AGAGATCATC AAGAAATCCA 24550 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GGAAAAGTG TTCATTTGTG ATGGAGAAAA AGAGATCATC AAGAAATCCA 131 CATCAGATAG ATAAGAGTCA GCTTAATTGT ATGTGGGGAT TGATTAGTAG CCTTTATTTT 24490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAGATAG ATAAGAGTCA GCTTAATTGT ATGTGGGGAT TGATTAGTAG CCTTTATTTT 191 GGTCAAAATC AGAGGAAACA GAAGCTGCTG TCAAATGGGA AAGGTTCTAC AAAGAATGTT 24430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCAAAATC AGAGGAAACA GAAGCTGCTG TCAAATGGGA AAGGTTCTAC AAAGAATGTT 251 ATAGGTATGT GGTTGGAATT ATTCGATTCG GAAACGGTCT CTCTACCTTC CGAGCTAGTA 24370 |||| ATAG...... .......... .......... .......... .......... .......... 255 ATGTCTGCGT ATATCCTACC CTCCCGAACC TCATTTGTTG TGCACTTTGT TAATAAGTGA 24310 .......... .......... .......... .......... .......... .......... 255 TTGTTTTTTC TTATCTTGCA GGCAAAAATT CAAGAAAGAT TGATGCTTTA ACTTACTGTA 24250 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GCAAAAATT CAAGAAAGAT TGATGCTTTA ACTTACTGTA 294 GCGACCAATT GTATGGCTAT GAGGTGAGTT TGTTTGGAGA ATTTAACCAT TTATCTAATT 24190 |||||||||| |||||||||| ||| GCGACCAATT GTATGGCTAT GAG....... .......... .......... .......... 317 ATCACCAAAA ATGTGTGGTA TAGAACTTAG CCAAATCTAG TTGTAAGGTT CTTGCATCAC 24130 .......... .......... .......... .......... .......... .......... 317 AAGGTTAATG AAAAAAATGT AACTTTGGAG AATAATTCTT GTTTTGGTGC TATGTAGCTC 24070 .......... .......... .......... .......... .......... .......... 317 TGACTCTTCA AAAATGTTAA GGGGTGTGTG TCGGATTTGC CAAAAGTAGC GTATAGTGAA 24010 .......... .......... .......... .......... .......... .......... 317 GAGTCTGTGA AACTTAGGTT TTGTGTACCT GAAGTTCTTA TAGCAATGTA GTCATAAGAC 23950 .......... .......... .......... .......... .......... .......... 317 AAGTGGTTTT TACTCCTTGA GGAAGAAAAA TGTGTTTCGA TATCCTTGTA GATAAGATAA 23890 .......... .......... .......... .......... .......... .......... 317 TGACTCTGTA GGCAGGGGTG GAGCTACATG TAGTGAAGGG GGTTCGATTG AATCCCATTT 23830 .......... .......... .......... .......... .......... .......... 317 GTCGGAGAGT ATACTGTGCG AAATAGAGTA AAGCTGTGAC ATTCTTGACT CTTTTTGCAT 23770 .......... .......... .......... .......... .......... .......... 317 TTCCTTGTTA ATATTTCTGA CTCCGTCACT TCTCGTAGCA CATTATGAAT GCAGCTTTTG 23710 .......... .......... .......... .......... .......... .......... 317 AGTAAAGGTA ATGACTTGAG AGTTGTTTGT CTCAGGATGG AGCTGAAGTG GAAGCTTTAG 23650 ||||| |||||||||| |||||||||| .......... .......... .......... .....GATGG AGCTGAAGTG GAAGCTTTAG 342 GAGTTCGTAC GGGTGATAAA AGGATAAAGA CTTCGATTCA CGAAGAAATT TCTGGTGAAA 23590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTCGTAC GGGTGATAAA AGGATAAAGA CTTCGATTCA CGAAGAAATT TCTGGTGAAA 402 TGCAGAAGAG CACTCAAATT ATAGCCCGAA ATGAGCAACA CGAAGAAGTA GATTATGGAC 23530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGAAGAG CACTCAAATT ATAGCCCGAA ATGAGCAACA CGAAGAAGTA GATTATGGAC 462 TATTTGATCA TATGATAAGT AAATACAAGC CATCGCCAAA GAAGGGCTGT AAGAATCAGT 23470 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TATTTGATCA TATGATAAGT AAATACAAGC CATCGCCAAA GAATGGCTGT AAGAATCAGT 522 CACCTGTTTA CGATTGGAAG GATACTGAGA CCGGGGATAT TCAGCAGGCT TCAAGTTCAG 23410 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CACCTGTTTA CGATTGGAAG GATACTGAGA CCAGGGATAT TCAGCAGGCT TCAAGTTCAG 582 CGGAAATGTC TATTCATAAG TTAAAATTGG CATCCATATT AGAAGCTATC GGCAGTCAAA 23350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAATGTC TATTCATAAG TTAAAATTGG CATCCATATT AGAAGCTATC GGCAGTCAAA 642 TTCATCGAGA AGATGGGGAT 23330 |||||||||| |||||| ||| TTCATCGAGA AGATGGAGAT 662 hqPGS_C08SLe0084H03.1-_SGN-E346504+ (24789 24708,24598 24426,24288 24227,23674 23330) ******************************************************************************** EST sequence 27 +strand 690 n (File: SGN-E250476+) 1 AATTTTTTGA TGATCGTGAG GAATGTAGAG AAGCTTTACA GTATGTTGAT GAACTTGACC 61 AAGCTGGAAT TGACACAAGT GAATTCCCAT GGCGGTTACC AGAGAGTCAC TGATATGATG 121 CCATAAGGTG TATGTTAAGA TCTTGACAGT GTGCTCACAG CAGATAGCCA TTGTGGAGTG 181 CCTATTAAGC TTGAATCAAC ATTATTACCA CTTATGCCGC CATTAATGGT GATTTTCTAG 241 AAAAACGGCA ACACAACTCC CAAAGCAAAC TCCAGCTTTG TAAGATCCTA TAGCCTGATT 301 TTGACTGGGA TCTCCATATC TAGAATGAGA TTCATTAAGG GGCTTCACGG CTCTCCCACG 361 TTTCATTGAA TTATGTTTGT ATAGAGAAGT ACAAAGAAAT GAAGAGCAAT TATTGAGTTG 421 AGATGCTGTT CTAGTGGAAG ATCTTTCTTC AGAATTGGGC ATCTACTCTA GGCTATATAG 481 CACACAATTG TCTGTTATCT CTTTAAGTCT TGGTGGACTG AGTAATCCGG TATTTATGCA 541 GGTGGGAGGT AAACCTGGTC GATTAGTCAA GGTGTGCACA AGTTAGTCTA GCCGTTACCA 601 TTGTAACAAA AAGTTCTCTG TTATCTCTAC TCTCTATCTA CTTTCTTGGC AATGTCTCTG 661 TGTCTGCCTN CTGAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 32688 to 35229): Exon 1 33288 33381 ( 94 n); cDNA 1 94 ( 94 n); score: 0.989 Intron 1 33382 33694 ( 313 n); Pd: 0.999 (s: 0.98), Pa: 0.971 (s: 1.00) Exon 2 33695 33803 ( 109 n); cDNA 95 203 ( 109 n); score: 0.991 Intron 2 33804 33943 ( 140 n); Pd: 0.998 (s: 0.98), Pa: 0.991 (s: 1.00) Exon 3 33944 34415 ( 472 n); cDNA 204 675 ( 472 n); score: 0.998 PPA cDNA 676 690 MATCH C08SLe0084H03.1+ SGN-E250476+ 0.996 675 0.978 C PGS_C08SLe0084H03.1+_SGN-E250476+ (33288 33381,33695 33803,33944 34415) Alignment (genomic DNA sequence = upper lines): AATTTTTTGA TGATCGTGAG GAATGTAGAG AAGCTTTACA GTATGTTGAT GAACTTCACC 33347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AATTTTTTGA TGATCGTGAG GAATGTAGAG AAGCTTTACA GTATGTTGAT GAACTTGACC 60 AAGCTGGAAT TGACACAAGT GAATTCCCAT GGCGGTATGT ACCTTTGTCT TCTGTCTCAA 33407 |||||||||| |||||||||| |||||||||| |||| AAGCTGGAAT TGACACAAGT GAATTCCCAT GGCG...... .......... .......... 94 TGTTATAGTG TAGTTGAGGT CTTCATCAAA GATAAAAGGA ATATTCTTAC CTTGCTGTTT 33467 .......... .......... .......... .......... .......... .......... 94 GCGAGAAAAA TAGTTTCTAG TTCCCGTTTG GTAGCTTAAG GATTAGAGAT TATGATTTTC 33527 .......... .......... .......... .......... .......... .......... 94 AAGTCATTCC TCATGGCTAA CACCACACAT ACCCAACCAT TTTCTTCATA AAGGAAGGAA 33587 .......... .......... .......... .......... .......... .......... 94 ATGGAAGGCT GGAGAATAGA GTACGAATGA AATTGTTAGT TTGATAGGAC GAGGCCAACT 33647 .......... .......... .......... .......... .......... .......... 94 TTAATCCTGG CTGTGTAATT AACCCTCTTA TTGCTATGCT TCTGTAGGTT ACCAGAGAGT 33707 ||| |||||||||| .......... .......... .......... .......... .......GTT ACCAGAGAGT 107 CACTGATATG ATGCCATAAG GTGTATGTTA AGATCTTGAC AGTGTGCTCA CAGCAGATAG 33767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGATATG ATGCCATAAG GTGTATGTTA AGATCTTGAC AGTGTGCTCA CAGCAGATAG 167 CCATTGTGGA GTGCCCATTA AGCTTGAATC AACATTGTAA GTTTCTTCAC ATCCCACCCC 33827 |||||||||| ||||| |||| |||||||||| |||||| CCATTGTGGA GTGCCTATTA AGCTTGAATC AACATT.... .......... .......... 203 CTCTTCTCCC TTTTGGCTTT TCACATTCTA GAAACATGAA AGCTACTACA TTTCCTCTTA 33887 .......... .......... .......... .......... .......... .......... 203 GTTTTGATCT TTTTTCCTGA AGTAAATAGG ATTTACGTAC CTTTTCTTTT GGGCAGATTA 33947 |||| .......... .......... .......... .......... .......... ......ATTA 207 CCACTTATGC CGCCATTAAT GGTGATTTTC TAGAAAAACG GCAACACAAC TCCCAAAGCA 34007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTTATGC CGCCATTAAT GGTGATTTTC TAGAAAAACG GCAACACAAC TCCCAAAGCA 267 AACTCCAGCT TTGTAAGATC CTATAGCCTG ATTTTGACTG GGATCTCCAT ATCTAGAATG 34067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCCAGCT TTGTAAGATC CTATAGCCTG ATTTTGACTG GGATCTCCAT ATCTAGAATG 327 AGATTCATTA AGGGGCTTCA CGGCTCTCCC ACGTTTCATT GAATTATGTT TGTATAGAGA 34127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTCATTA AGGGGCTTCA CGGCTCTCCC ACGTTTCATT GAATTATGTT TGTATAGAGA 387 AGTACAAAGA AATGAAGAGC AATTATTGAG TTGAGATGCT GTTCTAGTGG AAGATCTTTC 34187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAAAGA AATGAAGAGC AATTATTGAG TTGAGATGCT GTTCTAGTGG AAGATCTTTC 447 TTCAGAATTG GGCATCTACT CTAGGCTATA TAGCACACAA TTGTCTGTTA TCTCTTTAAG 34247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGAATTG GGCATCTACT CTAGGCTATA TAGCACACAA TTGTCTGTTA TCTCTTTAAG 507 TCTTGGTGGA CTGAGTAATC CGGTATTTAT GCAGGTGGGA GGTAAACCTG GTCGATTAGT 34307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGGTGGA CTGAGTAATC CGGTATTTAT GCAGGTGGGA GGTAAACCTG GTCGATTAGT 567 CAAGGTGTGC ACAAGTTAGT CTAGCCGTTA CCATTGTAAC AAAAAGTTCT CTGTTATCTC 34367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTGTGC ACAAGTTAGT CTAGCCGTTA CCATTGTAAC AAAAAGTTCT CTGTTATCTC 627 TACTCTCTAT CTACTTTCTT GGCAATGTCT CTGTGTCTGC CTCCTGAA 34415 |||||||||| |||||||||| |||||||||| |||||||||| || ||||| TACTCTCTAT CTACTTTCTT GGCAATGTCT CTGTGTCTGC CTNCTGAA 675 hqPGS_C08SLe0084H03.1+_SGN-E250476+ (33288 33381,33695 33803,33944 34415) ******************************************************************************** EST sequence 40 +strand 523 n (File: SGN-E253143+) 1 AATTTTTTGA TGATCGTGAG GAATGTAGAG AAGCTTTACA GTATGTTGAT GAACTTCACC 61 AAGCTGGAAT TGACACAAGT GAATTCCCAT GGCGGTTACC AGAGAGTCAC TGATATGATG 121 CCATAAGGTG TATGTTAAGA TCTTGACAGT GTGCTCACAG CAGATAGCCA TTGTGGAGTG 181 CCTATTAAGC TTGAATCAAC ATTATTACCA CTTATGCCGC CATTAATGGT GATTTTCTAG 241 AAAAACGGCA ACACAACTCC CAAAGCAAAC TCCAGCTTTG TAAGATCCTA TAGCCTGATT 301 TTGACTGGGA TCTCCATATC TAGAATGAGA TTCATTAAGG GGCTTCACGG CTCTCCCACG 361 TTTCATTGAA TTATGTTTGT ATAGAGAAGT ACAAAGAAAT GAAGAGCAAT TATTGAGTTG 421 AGATGCTGTT CTAGTGGAAG ATCTTTCTTC AGAATTGGGC ATCTACTCTA GGCTATATAG 481 CACACAATTG TCTGTTATCT CTTTAAGTCT TGGTGGACTG AGT Predicted gene structure (within gDNA segment 32688 to 34873): Exon 1 33288 33381 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 33382 33694 ( 313 n); Pd: 0.999 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 2 33695 33803 ( 109 n); cDNA 95 203 ( 109 n); score: 0.991 Intron 2 33804 33943 ( 140 n); Pd: 0.998 (s: 0.98), Pa: 0.991 (s: 1.00) Exon 3 33944 34263 ( 320 n); cDNA 204 523 ( 320 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E253143+ 0.998 523 1.000 C PGS_C08SLe0084H03.1+_SGN-E253143+ (33288 33381,33695 33803,33944 34263) Alignment (genomic DNA sequence = upper lines): AATTTTTTGA TGATCGTGAG GAATGTAGAG AAGCTTTACA GTATGTTGAT GAACTTCACC 33347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTTTGA TGATCGTGAG GAATGTAGAG AAGCTTTACA GTATGTTGAT GAACTTCACC 60 AAGCTGGAAT TGACACAAGT GAATTCCCAT GGCGGTATGT ACCTTTGTCT TCTGTCTCAA 33407 |||||||||| |||||||||| |||||||||| |||| AAGCTGGAAT TGACACAAGT GAATTCCCAT GGCG...... .......... .......... 94 TGTTATAGTG TAGTTGAGGT CTTCATCAAA GATAAAAGGA ATATTCTTAC CTTGCTGTTT 33467 .......... .......... .......... .......... .......... .......... 94 GCGAGAAAAA TAGTTTCTAG TTCCCGTTTG GTAGCTTAAG GATTAGAGAT TATGATTTTC 33527 .......... .......... .......... .......... .......... .......... 94 AAGTCATTCC TCATGGCTAA CACCACACAT ACCCAACCAT TTTCTTCATA AAGGAAGGAA 33587 .......... .......... .......... .......... .......... .......... 94 ATGGAAGGCT GGAGAATAGA GTACGAATGA AATTGTTAGT TTGATAGGAC GAGGCCAACT 33647 .......... .......... .......... .......... .......... .......... 94 TTAATCCTGG CTGTGTAATT AACCCTCTTA TTGCTATGCT TCTGTAGGTT ACCAGAGAGT 33707 ||| |||||||||| .......... .......... .......... .......... .......GTT ACCAGAGAGT 107 CACTGATATG ATGCCATAAG GTGTATGTTA AGATCTTGAC AGTGTGCTCA CAGCAGATAG 33767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGATATG ATGCCATAAG GTGTATGTTA AGATCTTGAC AGTGTGCTCA CAGCAGATAG 167 CCATTGTGGA GTGCCCATTA AGCTTGAATC AACATTGTAA GTTTCTTCAC ATCCCACCCC 33827 |||||||||| ||||| |||| |||||||||| |||||| CCATTGTGGA GTGCCTATTA AGCTTGAATC AACATT.... .......... .......... 203 CTCTTCTCCC TTTTGGCTTT TCACATTCTA GAAACATGAA AGCTACTACA TTTCCTCTTA 33887 .......... .......... .......... .......... .......... .......... 203 GTTTTGATCT TTTTTCCTGA AGTAAATAGG ATTTACGTAC CTTTTCTTTT GGGCAGATTA 33947 |||| .......... .......... .......... .......... .......... ......ATTA 207 CCACTTATGC CGCCATTAAT GGTGATTTTC TAGAAAAACG GCAACACAAC TCCCAAAGCA 34007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTTATGC CGCCATTAAT GGTGATTTTC TAGAAAAACG GCAACACAAC TCCCAAAGCA 267 AACTCCAGCT TTGTAAGATC CTATAGCCTG ATTTTGACTG GGATCTCCAT ATCTAGAATG 34067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCCAGCT TTGTAAGATC CTATAGCCTG ATTTTGACTG GGATCTCCAT ATCTAGAATG 327 AGATTCATTA AGGGGCTTCA CGGCTCTCCC ACGTTTCATT GAATTATGTT TGTATAGAGA 34127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTCATTA AGGGGCTTCA CGGCTCTCCC ACGTTTCATT GAATTATGTT TGTATAGAGA 387 AGTACAAAGA AATGAAGAGC AATTATTGAG TTGAGATGCT GTTCTAGTGG AAGATCTTTC 34187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAAAGA AATGAAGAGC AATTATTGAG TTGAGATGCT GTTCTAGTGG AAGATCTTTC 447 TTCAGAATTG GGCATCTACT CTAGGCTATA TAGCACACAA TTGTCTGTTA TCTCTTTAAG 34247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGAATTG GGCATCTACT CTAGGCTATA TAGCACACAA TTGTCTGTTA TCTCTTTAAG 507 TCTTGGTGGA CTGAGT 34263 |||||||||| |||||| TCTTGGTGGA CTGAGT 523 hqPGS_C08SLe0084H03.1+_SGN-E253143+ (33288 33381,33695 33803,33944 34263) ******************************************************************************** EST sequence 87 +strand 740 n (File: SGN-E332021+) 1 TTTGTGATTG TCAGTAGCTC TTCTTGGAAA AACAGTAGAT CCAAGTCCAC TCATCAAACT 61 CATAATTTTC CCCTTTGAAT TCACCATTTG TATGATTGGG AAGTAAATAG CAGTTCACCT 121 TTTTCCTTTT TTCTTCACTG ATTCTTCATA TTTTCAAGAA TTGTTTGTTT TTCTGTTAAT 181 ACATTTGTAT TGTGATGAGC TAGCTGTGAA CCCATCAAGA AAAAAAGGGA TTTTTAAAAT 241 TGAAATTAAG AGAACCCCAT GGATTTTCTG AGAATTACTT CTGTAATTTT CATCTGTGGA 301 GTTCTACTGA ACTTTCCTGC TATAGTTACA GCTGGTGATA TAGTTCATGA TGATGACTTA 361 GCTCCCAAGA AGCCTGGTTG TGAGAATGAT TTTGTGCTGG TGAAAGTTCA AACTTGGATT 421 AATGGGGAAG AAGATGCAGA GTTTGTTGGT GTTGGTGCTA GATTTGGCAC TACTATTGTG 481 TCAAAGGAGA AAAATGCACA ACAAACTCCG CTTACTCTTT CTGACCCTCG AGATTGTTGT 541 AAGCCTCCAA GGAAAAAGCT TTCTGGAGAA GTCGTCATGG TAGATCGCGG CCATTGCAAA 601 TTCACAACGA AGGCTAATAA TGCTGAAGCA GCAGGGGCTT CGGCAATCCT GATAGTAAAT 661 AATCAAAAAG AACTCTACCA GATGGTTTGT GATCCTGGAG AAACTGACCT AGATATACAC 721 ATTCCTGCTG TTATGCTACC Predicted gene structure (within gDNA segment 35851 to 39500): Exon 1 36451 36850 ( 400 n); cDNA 1 399 ( 399 n); score: 0.998 Intron 1 36851 38184 (1334 n); Pd: 0.992 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 38185 38343 ( 159 n); cDNA 400 558 ( 159 n); score: 1.000 Intron 2 38344 38442 ( 99 n); Pd: 0.992 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 38443 38554 ( 112 n); cDNA 559 670 ( 112 n); score: 1.000 Intron 3 38555 38820 ( 266 n); Pd: 0.994 (s: 1.00), Pa: 0.831 (s: 0.98) Exon 4 38821 38890 ( 70 n); cDNA 671 740 ( 70 n); score: 0.986 MATCH C08SLe0084H03.1+ SGN-E332021+ 0.997 741 1.001 C PGS_C08SLe0084H03.1+_SGN-E332021+ (36451 36850,38185 38343,38443 38554,38821 38890) Alignment (genomic DNA sequence = upper lines): TTTGTGATTG TCAGTAGCTC TTCTTGGAAA AACAGTAGAT CCAAGTCCAC TCATCAAACT 36510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATTG TCAGTAGCTC TTCTTGGAAA AACAGTAGAT CCAAGTCCAC TCATCAAACT 60 CATAATTTTC CCCTTTGAAT TCACCATTTG TATGATTGGG AAGTAAATAG CAGTTCACCT 36570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATTTTC CCCTTTGAAT TCACCATTTG TATGATTGGG AAGTAAATAG CAGTTCACCT 120 TTTTCCTTTT TTCTTCACTG ATTCTTCATA TTTTCAAGAA TTGTTTGTTT TTCTGTTAAT 36630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCTTTT TTCTTCACTG ATTCTTCATA TTTTCAAGAA TTGTTTGTTT TTCTGTTAAT 180 ACATTTGTAT TGTGATGAGC TAGCTGTGAA CCCATCAAGG AAAAAAAGGG ATTTTTAAAA 36690 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ACATTTGTAT TGTGATGAGC TAGCTGTGAA CCCATCAA-G AAAAAAAGGG ATTTTTAAAA 239 TTGAAATTAA GAGAACCCCA TGGATTTTCT GAGAATTACT TCTGTAATTT TCATCTGTGG 36750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAATTAA GAGAACCCCA TGGATTTTCT GAGAATTACT TCTGTAATTT TCATCTGTGG 299 AGTTCTACTG AACTTTCCTG CTATAGTTAC AGCTGGTGAT ATAGTTCATG ATGATGACTT 36810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTACTG AACTTTCCTG CTATAGTTAC AGCTGGTGAT ATAGTTCATG ATGATGACTT 359 AGCTCCCAAG AAGCCTGGTT GTGAGAATGA TTTTGTGCTG GTATACTTTT TATCTGAGTT 36870 |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCCAAG AAGCCTGGTT GTGAGAATGA TTTTGTGCTG .......... .......... 399 TCTAATGTTT GATTTCTCTT CGACCCACTA TGTTTTAGGT GATTATCTTA TCTGGGTTTC 36930 .......... .......... .......... .......... .......... .......... 399 TTTCAGTTTT GTGTGTTATT GCTTTGTTGT GGTTCGCCTA ATGAAAATTT GGCTGTTAAA 36990 .......... .......... .......... .......... .......... .......... 399 GGTGGTGTTT ATAGCTTGAT GTGATGTTAC TTTCATTTTA TCATCTGGGT TTTTCAATTT 37050 .......... .......... .......... .......... .......... .......... 399 TGTGTGCTTT TGCTTTGTCG TATTCGGGCT AGTGAAAATT TAGCTGTTAA AGGTGTTATC 37110 .......... .......... .......... .......... .......... .......... 399 TTTAGCTTGA TGCTATGTTG CTTTCGTTTT TCTCATCTGG ATTTACTCTG TTTTGTTAGT 37170 .......... .......... .......... .......... .......... .......... 399 TTATCGTGTT TTTGGGTTCG GACTTATGAA CATTTAGCTA TGAAGAAGTG TTGATTCTAG 37230 .......... .......... .......... .......... .......... .......... 399 TTTGATCCTA TGATACTTGT AATTTTCTCA AGTGGGTTTC CTGTACTTTT ATGTTGTGCT 37290 .......... .......... .......... .......... .......... .......... 399 TGGACTAGTG AAAATTTAGT ACTAAAAGGT GCTATTTTTA GTTTGATCCT ATGTTTTTTT 37350 .......... .......... .......... .......... .......... .......... 399 TTTGGATAAG GTAAAGTGTT TTATTGATGA TTATTGATTT GTATTAAGAA GGTACTTTTA 37410 .......... .......... .......... .......... .......... .......... 399 AAATACAGCT TGATCCTATG TTACTTCTAT TTTCTCAACT AGGTGTCCTC TAACTTTTTT 37470 .......... .......... .......... .......... .......... .......... 399 TTTGAGTTTC ACAATGTTGC TCGGACCAAT TATACTTGGG TATGGAAGGT GCTGTTTTTA 37530 .......... .......... .......... .......... .......... .......... 399 GCTTGATTGT ATGTTAATTT AACTTTCTCA ACTAGGTTCC CTCCATTTTG TTCGTTTTTG 37590 .......... .......... .......... .......... .......... .......... 399 CTTATTGTGC TTGCATTAAA GAATATTTTT AGCTGGATCA TGTCTTGCTT CTTTCTTTTT 37650 .......... .......... .......... .......... .......... .......... 399 CAACTGGTTT CTTCTATATT GTTCGGTTCT GCTTTATTGA GTGTGAACTG TTGAAAACTC 37710 .......... .......... .......... .......... .......... .......... 399 AGCTGTGACA GACTAACAGG TGTTATTATA GCATGATCCT ATGTTAATTA ATCTGTCAAT 37770 .......... .......... .......... .......... .......... .......... 399 TAAGTTATGT CCATCCAAAG TTCCATTTTC TTTTCTGCCT TTTTTGATGT TTGAAGTTAT 37830 .......... .......... .......... .......... .......... .......... 399 GATTTGATTT TCTTGTTAGG TGGTAATCTA TTTATTTCAG AACAATGTAG ATCTTGTCAT 37890 .......... .......... .......... .......... .......... .......... 399 CTTGAGGCAA AATGTGAAGA TACGGACATA TTTTTGGAAA GTTCATATAG TATTGATTGC 37950 .......... .......... .......... .......... .......... .......... 399 AGATGCTACA TTATGGACCT AATGTTACAT ATTCTGTTAA GCTGCTGGAG TGCAGAACTT 38010 .......... .......... .......... .......... .......... .......... 399 TTCATTGTCT AAACGAACAT CTTTATTTAA CATGGTTATG GAGGAATTTA ACTTTTTTGA 38070 .......... .......... .......... .......... .......... .......... 399 TTTAGTTTGG TGGTGCTTTG ACACTTGCTA AGGTTTATTC ATGGTATTAT TTTATTGTCT 38130 .......... .......... .......... .......... .......... .......... 399 TTTGTCCATG GTATCTTCCA GTGTTAACCT GACAACTGCT GATATTTTGG TTAGGTGAAA 38190 |||||| .......... .......... .......... .......... .......... ....GTGAAA 405 GTTCAAACTT GGATTAATGG GGAAGAAGAT GCAGAGTTTG TTGGTGTTGG TGCTAGATTT 38250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAACTT GGATTAATGG GGAAGAAGAT GCAGAGTTTG TTGGTGTTGG TGCTAGATTT 465 GGCACTACTA TTGTGTCAAA GGAGAAAAAT GCACAACAAA CTCCGCTTAC TCTTTCTGAC 38310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCACTACTA TTGTGTCAAA GGAGAAAAAT GCACAACAAA CTCCGCTTAC TCTTTCTGAC 525 CCTCGAGATT GTTGTAAGCC TCCAAGGAAA AAGGTTAGTT TCACCATATA AATGCTTACC 38370 |||||||||| |||||||||| |||||||||| ||| CCTCGAGATT GTTGTAAGCC TCCAAGGAAA AAG....... .......... .......... 558 AGATGTATAC CTCAAGGGAA TTTTGCTTTA TGCTTCTAAT AATGGCTTTT ATTTTTCAAT 38430 .......... .......... .......... .......... .......... .......... 558 CCATTTTGGT AGCTTTCTGG AGAAGTCGTC ATGGTAGATC GCGGCCATTG CAAATTCACA 38490 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CTTTCTGG AGAAGTCGTC ATGGTAGATC GCGGCCATTG CAAATTCACA 606 ACGAAGGCTA ATAATGCTGA AGCAGCAGGG GCTTCGGCAA TCCTGATAGT AAATAATCAA 38550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGGCTA ATAATGCTGA AGCAGCAGGG GCTTCGGCAA TCCTGATAGT AAATAATCAA 666 AAAGGTAATT GGTGATTGAT AAATATTCAT GGATTATGAA ATTATGACTG TTAGGTATTT 38610 |||| AAAG...... .......... .......... .......... .......... .......... 670 ATACTATGTG GTTTAGTAAT AGGATGTCTT CTGCGGCAAT AATAAATTAA AGACACTTTA 38670 .......... .......... .......... .......... .......... .......... 670 AGTCTAAAGA GAAAAAGTTT CTTGCTACTT CTCATTGTTA TCTTTCTGAG GGGGTGATGT 38730 .......... .......... .......... .......... .......... .......... 670 GGAGCTCTTA CTGTTTTCTG TTGATTGAAG TTTGAACACT GCCATACCTC ACCGCTTGCA 38790 .......... .......... .......... .......... .......... .......... 670 GTTGTTTTAC GGGTGTCATT ACTCTTGCAG AACTCTACAA GATGGTTTGT GATCCTGGAG 38850 |||||||| | |||||||||| |||||||||| .......... .......... .......... AACTCTACCA GATGGTTTGT GATCCTGGAG 700 AAACTGACCT AGATATACAC ATTCCTGCTG TTATGCTACC 38890 |||||||||| |||||||||| |||||||||| |||||||||| AAACTGACCT AGATATACAC ATTCCTGCTG TTATGCTACC 740 hqPGS_C08SLe0084H03.1+_SGN-E332021+ (36451 36850,38185 38343,38443 38554,38821 38890) ******************************************************************************** EST sequence 42 +strand 667 n (File: SGN-E328320+) 1 TTTGTGATTG TCAGTAGCTC TTCTTGGAAA AACAGTAGAT CCAAGTCCAC TCATCAAACT 61 CATAATTTTC CCCTTTGAAT TCACCATTTG TATGATTGGG AAGTAAATAG CAGTTCACCT 121 TTTTCCTTTT TTCTTCACTG ATTCTTCATA TTTTCAAGAA TTGTTTGTTT TTCTGTTAAT 181 ACATTTGTAT TGTGATGAGC TAGCTGTGAA CCCATCAAGA AAAAAAGGGA TTTTTAAAAT 241 TGAAATTAAG AGAACCCCAT GGATTTTCTG AGAATTACTT CTGTAATTTT CATCTGTGGA 301 GTTCTACTGA ACTTTCCTGC TATAGTTACA GCTGGTGATA TAGTTCATGA TGATGACTTA 361 GCTCCCAAGA AGCCTGGTTG TGAGAATGAT TTTGTGCTGG TGAAAGTTCA AACTTGGATT 421 AATGGGGAAG AAGATGCAGA GTTTGTTGGT GTTGGTGCTA GATTTGGCAC TACTATTGTG 481 TCAAAGGAGA AAAATGCACA ACAAACTCCG CTTACTCTTT CTGACCCTCG AGATTGTTGT 541 AAGCCTCCAA GGAAAAAGCT TTCTGGAGAA GTCGTCATGG TAGATCGCGG CCATTGCAAT 601 TCACAACGAA GGCTAATAAT GCTGAAGCAG CAGGGGCTTC GGCAATCCCT GATAGTAATA 661 ATCAAAA Predicted gene structure (within gDNA segment 35851 to 39333): Exon 1 36451 36850 ( 400 n); cDNA 1 399 ( 399 n); score: 0.998 Intron 1 36851 38184 (1334 n); Pd: 0.992 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 38185 38343 ( 159 n); cDNA 400 558 ( 159 n); score: 1.000 Intron 2 38344 38442 ( 99 n); Pd: 0.992 (s: 1.00), Pa: 0.980 (s: 0.98) Exon 3 38443 38552 ( 110 n); cDNA 559 667 ( 109 n); score: 0.959 MATCH C08SLe0084H03.1+ SGN-E328320+ 0.992 669 1.003 C PGS_C08SLe0084H03.1+_SGN-E328320+ (36451 36850,38185 38343,38443 38552) Alignment (genomic DNA sequence = upper lines): TTTGTGATTG TCAGTAGCTC TTCTTGGAAA AACAGTAGAT CCAAGTCCAC TCATCAAACT 36510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGATTG TCAGTAGCTC TTCTTGGAAA AACAGTAGAT CCAAGTCCAC TCATCAAACT 60 CATAATTTTC CCCTTTGAAT TCACCATTTG TATGATTGGG AAGTAAATAG CAGTTCACCT 36570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATTTTC CCCTTTGAAT TCACCATTTG TATGATTGGG AAGTAAATAG CAGTTCACCT 120 TTTTCCTTTT TTCTTCACTG ATTCTTCATA TTTTCAAGAA TTGTTTGTTT TTCTGTTAAT 36630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCTTTT TTCTTCACTG ATTCTTCATA TTTTCAAGAA TTGTTTGTTT TTCTGTTAAT 180 ACATTTGTAT TGTGATGAGC TAGCTGTGAA CCCATCAAGG AAAAAAAGGG ATTTTTAAAA 36690 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ACATTTGTAT TGTGATGAGC TAGCTGTGAA CCCATCAA-G AAAAAAAGGG ATTTTTAAAA 239 TTGAAATTAA GAGAACCCCA TGGATTTTCT GAGAATTACT TCTGTAATTT TCATCTGTGG 36750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAATTAA GAGAACCCCA TGGATTTTCT GAGAATTACT TCTGTAATTT TCATCTGTGG 299 AGTTCTACTG AACTTTCCTG CTATAGTTAC AGCTGGTGAT ATAGTTCATG ATGATGACTT 36810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTACTG AACTTTCCTG CTATAGTTAC AGCTGGTGAT ATAGTTCATG ATGATGACTT 359 AGCTCCCAAG AAGCCTGGTT GTGAGAATGA TTTTGTGCTG GTATACTTTT TATCTGAGTT 36870 |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCCAAG AAGCCTGGTT GTGAGAATGA TTTTGTGCTG .......... .......... 399 TCTAATGTTT GATTTCTCTT CGACCCACTA TGTTTTAGGT GATTATCTTA TCTGGGTTTC 36930 .......... .......... .......... .......... .......... .......... 399 TTTCAGTTTT GTGTGTTATT GCTTTGTTGT GGTTCGCCTA ATGAAAATTT GGCTGTTAAA 36990 .......... .......... .......... .......... .......... .......... 399 GGTGGTGTTT ATAGCTTGAT GTGATGTTAC TTTCATTTTA TCATCTGGGT TTTTCAATTT 37050 .......... .......... .......... .......... .......... .......... 399 TGTGTGCTTT TGCTTTGTCG TATTCGGGCT AGTGAAAATT TAGCTGTTAA AGGTGTTATC 37110 .......... .......... .......... .......... .......... .......... 399 TTTAGCTTGA TGCTATGTTG CTTTCGTTTT TCTCATCTGG ATTTACTCTG TTTTGTTAGT 37170 .......... .......... .......... .......... .......... .......... 399 TTATCGTGTT TTTGGGTTCG GACTTATGAA CATTTAGCTA TGAAGAAGTG TTGATTCTAG 37230 .......... .......... .......... .......... .......... .......... 399 TTTGATCCTA TGATACTTGT AATTTTCTCA AGTGGGTTTC CTGTACTTTT ATGTTGTGCT 37290 .......... .......... .......... .......... .......... .......... 399 TGGACTAGTG AAAATTTAGT ACTAAAAGGT GCTATTTTTA GTTTGATCCT ATGTTTTTTT 37350 .......... .......... .......... .......... .......... .......... 399 TTTGGATAAG GTAAAGTGTT TTATTGATGA TTATTGATTT GTATTAAGAA GGTACTTTTA 37410 .......... .......... .......... .......... .......... .......... 399 AAATACAGCT TGATCCTATG TTACTTCTAT TTTCTCAACT AGGTGTCCTC TAACTTTTTT 37470 .......... .......... .......... .......... .......... .......... 399 TTTGAGTTTC ACAATGTTGC TCGGACCAAT TATACTTGGG TATGGAAGGT GCTGTTTTTA 37530 .......... .......... .......... .......... .......... .......... 399 GCTTGATTGT ATGTTAATTT AACTTTCTCA ACTAGGTTCC CTCCATTTTG TTCGTTTTTG 37590 .......... .......... .......... .......... .......... .......... 399 CTTATTGTGC TTGCATTAAA GAATATTTTT AGCTGGATCA TGTCTTGCTT CTTTCTTTTT 37650 .......... .......... .......... .......... .......... .......... 399 CAACTGGTTT CTTCTATATT GTTCGGTTCT GCTTTATTGA GTGTGAACTG TTGAAAACTC 37710 .......... .......... .......... .......... .......... .......... 399 AGCTGTGACA GACTAACAGG TGTTATTATA GCATGATCCT ATGTTAATTA ATCTGTCAAT 37770 .......... .......... .......... .......... .......... .......... 399 TAAGTTATGT CCATCCAAAG TTCCATTTTC TTTTCTGCCT TTTTTGATGT TTGAAGTTAT 37830 .......... .......... .......... .......... .......... .......... 399 GATTTGATTT TCTTGTTAGG TGGTAATCTA TTTATTTCAG AACAATGTAG ATCTTGTCAT 37890 .......... .......... .......... .......... .......... .......... 399 CTTGAGGCAA AATGTGAAGA TACGGACATA TTTTTGGAAA GTTCATATAG TATTGATTGC 37950 .......... .......... .......... .......... .......... .......... 399 AGATGCTACA TTATGGACCT AATGTTACAT ATTCTGTTAA GCTGCTGGAG TGCAGAACTT 38010 .......... .......... .......... .......... .......... .......... 399 TTCATTGTCT AAACGAACAT CTTTATTTAA CATGGTTATG GAGGAATTTA ACTTTTTTGA 38070 .......... .......... .......... .......... .......... .......... 399 TTTAGTTTGG TGGTGCTTTG ACACTTGCTA AGGTTTATTC ATGGTATTAT TTTATTGTCT 38130 .......... .......... .......... .......... .......... .......... 399 TTTGTCCATG GTATCTTCCA GTGTTAACCT GACAACTGCT GATATTTTGG TTAGGTGAAA 38190 |||||| .......... .......... .......... .......... .......... ....GTGAAA 405 GTTCAAACTT GGATTAATGG GGAAGAAGAT GCAGAGTTTG TTGGTGTTGG TGCTAGATTT 38250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAACTT GGATTAATGG GGAAGAAGAT GCAGAGTTTG TTGGTGTTGG TGCTAGATTT 465 GGCACTACTA TTGTGTCAAA GGAGAAAAAT GCACAACAAA CTCCGCTTAC TCTTTCTGAC 38310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCACTACTA TTGTGTCAAA GGAGAAAAAT GCACAACAAA CTCCGCTTAC TCTTTCTGAC 525 CCTCGAGATT GTTGTAAGCC TCCAAGGAAA AAGGTTAGTT TCACCATATA AATGCTTACC 38370 |||||||||| |||||||||| |||||||||| ||| CCTCGAGATT GTTGTAAGCC TCCAAGGAAA AAG....... .......... .......... 558 AGATGTATAC CTCAAGGGAA TTTTGCTTTA TGCTTCTAAT AATGGCTTTT ATTTTTCAAT 38430 .......... .......... .......... .......... .......... .......... 558 CCATTTTGGT AGCTTTCTGG AGAAGTCGTC ATGGTAGATC GCGGCCATTG CAAATTCACA 38490 |||||||| |||||||||| |||||||||| |||||||||| | |||||||| .......... ..CTTTCTGG AGAAGTCGTC ATGGTAGATC GCGGCCATTG C-AATTCACA 605 ACGAAGGCTA ATAATGCTGA AGCAGCAGGG GCTTCGGCAA T-CCTGATAG TAAATAATCA 38549 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| | |||||||| ACGAAGGCTA ATAATGCTGA AGCAGCAGGG GCTTCGGCAA TCCCTGATAG T-AATAATCA 664 AAA 38552 ||| AAA 667 hqPGS_C08SLe0084H03.1+_SGN-E328320+ (36451 36850,38185 38343,38443 38552) ******************************************************************************** EST sequence 68 +strand 353 n (File: SGN-E323921+) 1 CATTTGTATG ATTGGGAAGT AAATAGCAGT TCACCTTTTT CCTTTTTTCT TCACTGATTC 61 TTCATATTTT CAAGAATTGT TTGTTTTTCT GTTAATACAT TTGTATTGTG ATGAGCTAGC 121 TGTGAACCCA TCAAGAAAAA AAGGGATTTT TAAAATTGAA ATTAAGAGAA CCCCATGGAT 181 TTTCTGAGAA TTACTTCTGT AATTTTCATC TGTGGAGTTC TACTGAACTT TCCTGCTATA 241 GTTACAGCTG GTGATATAGT TCATGATGAT GACTTAGCTC CCAAGAAGCC TGGTTGTGAG 301 AATGATTNTG TGCTGGTGAA AGTTCAAACT TGGATTAATG GGGAAGAAGA TGC Predicted gene structure (within gDNA segment 35935 to 38832): Exon 1 36535 36850 ( 316 n); cDNA 1 315 ( 315 n); score: 0.994 Intron 1 36851 38184 (1334 n); Pd: 0.992 (s: 0.98), Pa: 0.978 (s: 0) Exon 2 38185 38222 ( 38 n); cDNA 316 353 ( 38 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E323921+ 0.994 354 1.003 C PGS_C08SLe0084H03.1+_SGN-E323921+ (36535 36850,38185 38222) Alignment (genomic DNA sequence = upper lines): CATTTGTATG ATTGGGAAGT AAATAGCAGT TCACCTTTTT CCTTTTTTCT TCACTGATTC 36594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTGTATG ATTGGGAAGT AAATAGCAGT TCACCTTTTT CCTTTTTTCT TCACTGATTC 60 TTCATATTTT CAAGAATTGT TTGTTTTTCT GTTAATACAT TTGTATTGTG ATGAGCTAGC 36654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATATTTT CAAGAATTGT TTGTTTTTCT GTTAATACAT TTGTATTGTG ATGAGCTAGC 120 TGTGAACCCA TCAAGGAAAA AAAGGGATTT TTAAAATTGA AATTAAGAGA ACCCCATGGA 36714 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAACCCA TCAA-GAAAA AAAGGGATTT TTAAAATTGA AATTAAGAGA ACCCCATGGA 179 TTTTCTGAGA ATTACTTCTG TAATTTTCAT CTGTGGAGTT CTACTGAACT TTCCTGCTAT 36774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTGAGA ATTACTTCTG TAATTTTCAT CTGTGGAGTT CTACTGAACT TTCCTGCTAT 239 AGTTACAGCT GGTGATATAG TTCATGATGA TGACTTAGCT CCCAAGAAGC CTGGTTGTGA 36834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACAGCT GGTGATATAG TTCATGATGA TGACTTAGCT CCCAAGAAGC CTGGTTGTGA 299 GAATGATTTT GTGCTGGTAT ACTTTTTATC TGAGTTTCTA ATGTTTGATT TCTCTTCGAC 36894 |||||||| | |||||| GAATGATTNT GTGCTG.... .......... .......... .......... .......... 315 CCACTATGTT TTAGGTGATT ATCTTATCTG GGTTTCTTTC AGTTTTGTGT GTTATTGCTT 36954 .......... .......... .......... .......... .......... .......... 315 TGTTGTGGTT CGCCTAATGA AAATTTGGCT GTTAAAGGTG GTGTTTATAG CTTGATGTGA 37014 .......... .......... .......... .......... .......... .......... 315 TGTTACTTTC ATTTTATCAT CTGGGTTTTT CAATTTTGTG TGCTTTTGCT TTGTCGTATT 37074 .......... .......... .......... .......... .......... .......... 315 CGGGCTAGTG AAAATTTAGC TGTTAAAGGT GTTATCTTTA GCTTGATGCT ATGTTGCTTT 37134 .......... .......... .......... .......... .......... .......... 315 CGTTTTTCTC ATCTGGATTT ACTCTGTTTT GTTAGTTTAT CGTGTTTTTG GGTTCGGACT 37194 .......... .......... .......... .......... .......... .......... 315 TATGAACATT TAGCTATGAA GAAGTGTTGA TTCTAGTTTG ATCCTATGAT ACTTGTAATT 37254 .......... .......... .......... .......... .......... .......... 315 TTCTCAAGTG GGTTTCCTGT ACTTTTATGT TGTGCTTGGA CTAGTGAAAA TTTAGTACTA 37314 .......... .......... .......... .......... .......... .......... 315 AAAGGTGCTA TTTTTAGTTT GATCCTATGT TTTTTTTTTG GATAAGGTAA AGTGTTTTAT 37374 .......... .......... .......... .......... .......... .......... 315 TGATGATTAT TGATTTGTAT TAAGAAGGTA CTTTTAAAAT ACAGCTTGAT CCTATGTTAC 37434 .......... .......... .......... .......... .......... .......... 315 TTCTATTTTC TCAACTAGGT GTCCTCTAAC TTTTTTTTTG AGTTTCACAA TGTTGCTCGG 37494 .......... .......... .......... .......... .......... .......... 315 ACCAATTATA CTTGGGTATG GAAGGTGCTG TTTTTAGCTT GATTGTATGT TAATTTAACT 37554 .......... .......... .......... .......... .......... .......... 315 TTCTCAACTA GGTTCCCTCC ATTTTGTTCG TTTTTGCTTA TTGTGCTTGC ATTAAAGAAT 37614 .......... .......... .......... .......... .......... .......... 315 ATTTTTAGCT GGATCATGTC TTGCTTCTTT CTTTTTCAAC TGGTTTCTTC TATATTGTTC 37674 .......... .......... .......... .......... .......... .......... 315 GGTTCTGCTT TATTGAGTGT GAACTGTTGA AAACTCAGCT GTGACAGACT AACAGGTGTT 37734 .......... .......... .......... .......... .......... .......... 315 ATTATAGCAT GATCCTATGT TAATTAATCT GTCAATTAAG TTATGTCCAT CCAAAGTTCC 37794 .......... .......... .......... .......... .......... .......... 315 ATTTTCTTTT CTGCCTTTTT TGATGTTTGA AGTTATGATT TGATTTTCTT GTTAGGTGGT 37854 .......... .......... .......... .......... .......... .......... 315 AATCTATTTA TTTCAGAACA ATGTAGATCT TGTCATCTTG AGGCAAAATG TGAAGATACG 37914 .......... .......... .......... .......... .......... .......... 315 GACATATTTT TGGAAAGTTC ATATAGTATT GATTGCAGAT GCTACATTAT GGACCTAATG 37974 .......... .......... .......... .......... .......... .......... 315 TTACATATTC TGTTAAGCTG CTGGAGTGCA GAACTTTTCA TTGTCTAAAC GAACATCTTT 38034 .......... .......... .......... .......... .......... .......... 315 ATTTAACATG GTTATGGAGG AATTTAACTT TTTTGATTTA GTTTGGTGGT GCTTTGACAC 38094 .......... .......... .......... .......... .......... .......... 315 TTGCTAAGGT TTATTCATGG TATTATTTTA TTGTCTTTTG TCCATGGTAT CTTCCAGTGT 38154 .......... .......... .......... .......... .......... .......... 315 TAACCTGACA ACTGCTGATA TTTTGGTTAG GTGAAAGTTC AAACTTGGAT TAATGGGGAA 38214 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGAAAGTTC AAACTTGGAT TAATGGGGAA 345 GAAGATGC 38222 |||||||| GAAGATGC 353 hqPGS_C08SLe0084H03.1+_SGN-E323921+ (36535 36850,38185 38222) ******************************************************************************** EST sequence 52 +strand 640 n (File: SGN-E393966+) 1 CTCGAGTTTT CTTGTTTGTT TTGTACAAGT TAATGAGGTT CACATGGTTC TTTGAAATCT 61 TAGTGGTTCT CTTCTGCATC GGTGGTGTGG AGGGGCTACA AACTTGCTTA GTTGCCTTGC 121 TAGCTAGGTG GTTTAAGCCT ACGGGAGAGT CATACATTAA AGTACCCATT TTTGGTGCAG 181 TTTCTTATCT TACTTTGGCT GTTTCGCCAT TCTGCATAAC TTTTGCAGTG GTTTGGGCAA 241 TGTACAGAAA TTCTTCTTTT GGCTGGATAG GTCAAGACAT ACTTGGCATT GCACTTATAA 301 TTACAGTTCT GCAAATTGTG CGGATACCTA ATCTCAAGGT TGGTTCAGTT CTTTTGGGTT 361 GCGCCTTCAT CTACGACATA TTTTGGGTAT TTGCTTCTCA GAGTCTCTTC CATGAAAGTG 421 TGATGATTGT GGTAGCTCGT GGTGATAAAA GTGGAGAAGA TGGTATTCCA ATGCTGCTGA 481 AGATTCCACG ACTATTTGAT CCATGGGGTG GTTACAGCAT TATCGGCTTT GGTGACATCC 541 TATTGCCTGG ACTGCTAGTA GCATTTTCAC TTAGGTATGA TTGGCTTGCA AAAAAAAATC 601 TTCGAGCTGG TTACTTCTTG TGGGCAATGA TTGCATATGG Predicted gene structure (within gDNA segment 40067 to 44425): Exon 1 40739 40830 ( 92 n); cDNA 1 92 ( 92 n); score: 0.935 Intron 1 40831 41482 ( 652 n); Pd: 0.943 (s: 1.00), Pa: 0.996 (s: 0) Exon 2 41483 41517 ( 35 n); cDNA 93 127 ( 35 n); score: 1.000 Intron 2 41518 42008 ( 491 n); Pd: 0.938 (s: 0), Pa: 0.998 (s: 1.00) Exon 3 42009 42165 ( 157 n); cDNA 128 284 ( 157 n); score: 1.000 Intron 3 42166 42596 ( 431 n); Pd: 0.995 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 42597 42650 ( 54 n); cDNA 285 338 ( 54 n); score: 1.000 Intron 4 42651 43108 ( 458 n); Pd: 0.836 (s: 1.00), Pa: 0.551 (s: 1.00) Exon 5 43109 43201 ( 93 n); cDNA 339 431 ( 93 n); score: 1.000 Intron 5 43202 43285 ( 84 n); Pd: 0.403 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 43286 43428 ( 143 n); cDNA 432 574 ( 143 n); score: 1.000 Intron 6 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 0.96) Exon 7 43750 43815 ( 66 n); cDNA 575 640 ( 66 n); score: 0.970 MATCH C08SLe0084H03.1+ SGN-E393966+ 0.987 640 1.000 C PGS_C08SLe0084H03.1+_SGN-E393966+ (40739 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43815) Alignment (genomic DNA sequence = upper lines): CTTCTTGCTT CTTGTTTGTT TTGTACAAGT TAATGAGGTT CACATGGTTC TTTGAAATCT 40798 || || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAGTTTT CTTGTTTGTT TTGTACAAGT TAATGAGGTT CACATGGTTC TTTGAAATCT 60 TAGTGGTTCT CTTCTGCATC GGTGGTGTGG AGGTGCGTGT TGTTGCTTTG ATATGTTATT 40858 |||||||||| |||||||||| |||||||||| || TAGTGGTTCT CTTCTGCATC GGTGGTGTGG AG........ .......... .......... 92 TATCATAAAT GATGAATTTG CAATTACCTT CTTGAATACT TTAGCCCATA GATTTGTGTT 40918 .......... .......... .......... .......... .......... .......... 92 GGCAGATGAT ATACTTGTCC ATATTTGACC GCCTTAGATA ATTATAATGG GATAACACTT 40978 .......... .......... .......... .......... .......... .......... 92 CAGGCAGGAA ATTGGTGCAC CTTGAGGGTA CACATGTCTT CTTAAATATA TGTGTCCAGG 41038 .......... .......... .......... .......... .......... .......... 92 ATTAGGAGGA GCAATGTTGA AAATGTTATA ACTTCTATGA TGCGTATACA GGATATGATA 41098 .......... .......... .......... .......... .......... .......... 92 AGCGACATTA TTGTCTTATG CTAATTCTAT TCTAATTGAT AGCACTACCT TGAAATTTGT 41158 .......... .......... .......... .......... .......... .......... 92 ATCCATATAT AAGAAAACCA CAAGATAGTG TAAGGTTCAT TCGTGATTTG CATTATCTCT 41218 .......... .......... .......... .......... .......... .......... 92 TCAGATAAAA AATATGAACT TATGATTAGT TAGTGTTCAG TAAGGCCCCA TATTATTTTA 41278 .......... .......... .......... .......... .......... .......... 92 AATCAGTTAT TTGTAAACCT TTCAAAAATA AATAAATAAA TAAATTTTGC ATACATATGA 41338 .......... .......... .......... .......... .......... .......... 92 ATGTATTGTC AACTTATTTC TTTTAGAAAA GCAGATCTCT AATTCTATTA TATTTATATT 41398 .......... .......... .......... .......... .......... .......... 92 ATTTATCTGT TCCTCTCTTT CTATGACCTT GTTCTGGATT CCACAATCTG TTAAAACACT 41458 .......... .......... .......... .......... .......... .......... 92 TGTTTTGGTT CCTTTCATGT GCAGGGGCTA CAAACTTGCT TAGTTGCCTT GCTAGCTAGG 41518 |||||| |||||||||| |||||||||| ||||||||| .......... .......... ....GGGCTA CAAACTTGCT TAGTTGCCTT GCTAGCTAG. 127 TATGGTTAGT TCCACTTTAG TTGCGTTATA CATAGTGTAA TTTGCTGTCT CTCTTTTTTT 41578 .......... .......... .......... .......... .......... .......... 127 AATTTTTAAA CAAGTTAAGG TAATAGTGTA ATTCTCTGTC CCTGAAGTTA CCATCATGCC 41638 .......... .......... .......... .......... .......... .......... 127 TTTACATAGT GTAATTTGCT GTCTCTCTTT TTTTAATTTT TAAACAAGTT AAGGTAATAG 41698 .......... .......... .......... .......... .......... .......... 127 TGTAATTCTC TGTCCCTGAA GTTACCATCA TGCCTTTTGC GCAACTCTAC ATTTTTACTA 41758 .......... .......... .......... .......... .......... .......... 127 CACAATTAGG ATGGACAAAT GAGCTGTTTT AGTTGTTAAG GAATCCAGCT TTAAGTTGTG 41818 .......... .......... .......... .......... .......... .......... 127 TGATGAGAGA AATTGCTGGC ATTTTCTTAA TTGGTAAATT CTTTTGTTGT ATGAAAAAAT 41878 .......... .......... .......... .......... .......... .......... 127 CTTTAGATGT GACCTCTCAT TTCAAGCATA AGCATAACCA TATCAGAAGT GGAAAGTTAT 41938 .......... .......... .......... .......... .......... .......... 127 TTCATCTTTC CAGCATCGGA AGTTCTGTTA CCCAAGTCTA ATCGTTTCAT GTGCTTTGTT 41998 .......... .......... .......... .......... .......... .......... 127 CTTTTTTCAG GTGGTTTAAG CCTACGGGAG AGTCATACAT TAAAGTACCC ATTTTTGGTG 42058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTGGTTTAAG CCTACGGGAG AGTCATACAT TAAAGTACCC ATTTTTGGTG 177 CAGTTTCTTA TCTTACTTTG GCTGTTTCGC CATTCTGCAT AACTTTTGCA GTGGTTTGGG 42118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTCTTA TCTTACTTTG GCTGTTTCGC CATTCTGCAT AACTTTTGCA GTGGTTTGGG 237 CAATGTACAG AAATTCTTCT TTTGGCTGGA TAGGTCAAGA CATACTTGTA AGCAACATTT 42178 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATGTACAG AAATTCTTCT TTTGGCTGGA TAGGTCAAGA CATACTT... .......... 284 CTTTCTGTTT CCTTTTTTAG CAATATTTAT TTTTTCATTT AAATGCTAGT TTACTTCATA 42238 .......... .......... .......... .......... .......... .......... 284 TCCCGTGCAA ACTTTTTTTT TCCTTATAAA AAAGGTCTCT TGAAATTTGA GTGTTATGCA 42298 .......... .......... .......... .......... .......... .......... 284 TTATCAAATT TATACACAAA TGACAGTTGT GATTGGTATA AACAAGAGAT TTTACCACTG 42358 .......... .......... .......... .......... .......... .......... 284 GATTTTTGTC CTTTTACTTT ATTGTTTGCT CACCAAAGTC CAAAGTTGGA TTTCGGCATC 42418 .......... .......... .......... .......... .......... .......... 284 CTAAGATGTT TGACACCAAT ACGTTTACTG CTGTATTCCA TACAACTTTC ACAAATTTAA 42478 .......... .......... .......... .......... .......... .......... 284 AATTCAAATA TATTTAACAC GAGTGTATCC GATTTTCCAT TGCTTAACAT GTAGACTGTT 42538 .......... .......... .......... .......... .......... .......... 284 TATTTACTGT TTTGTGGTAT ATCAACTGAT GATCTTTACT TTTTTTCCTT TTGGATAGGG 42598 || .......... .......... .......... .......... .......... ........GG 286 CATTGCACTT ATAATTACAG TTCTGCAAAT TGTGCGGATA CCTAATCTCA AGGTGAACAA 42658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CATTGCACTT ATAATTACAG TTCTGCAAAT TGTGCGGATA CCTAATCTCA AG........ 338 TTTTACCAAC CAAGAATTAA ATGGAACGGA CTGTATTTCC TTGCATGAAT ATGTTCAGTT 42718 .......... .......... .......... .......... .......... .......... 338 GATCTCATCT TGTAAATTAT CTTATAGCCA TGCCTGGTTT AAGTTGGTGA CTTCTTTTTA 42778 .......... .......... .......... .......... .......... .......... 338 CTTGTTATCG TAAGTTGCAT ATTCTTTCTA GTGGCACAAA GAACATACAC ACACAGAAGC 42838 .......... .......... .......... .......... .......... .......... 338 AAGCATTGTT ATTACATTAA CAAAATGTTT ATTTTTCAAC CGTAGTTCAA GGATTGATAC 42898 .......... .......... .......... .......... .......... .......... 338 TAGAAATAGT GGGCAAGTTT GTTTATAAAA AATCAACAAA ATTTTTTTGA GAGATTTTCT 42958 .......... .......... .......... .......... .......... .......... 338 TCTTCAGTTG TTCGAAGGTC ACTGCTTCGG GTGTTTATTA TCTTAATTGC CGCATATTGA 43018 .......... .......... .......... .......... .......... .......... 338 TGCTCACTCT ACTGACGTGT CTCTTTTACA GCACAGATTT TACTATGATC TTGTCATCTC 43078 .......... .......... .......... .......... .......... .......... 338 ATATAAATAT TAACTAGTAT TAAATATCAG GTTGGTTCAG TTCTTTTGGG TTGCGCCTTC 43138 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTGGTTCAG TTCTTTTGGG TTGCGCCTTC 368 ATCTACGACA TATTTTGGGT ATTTGCTTCT CAGAGTCTCT TCCATGAAAG TGTGATGATT 43198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTACGACA TATTTTGGGT ATTTGCTTCT CAGAGTCTCT TCCATGAAAG TGTGATGATT 428 GTGGTAGGTA ATCATTTAAG ACTACTTGAC GATAGGAGTT GTTTCTAGAT ATAAGTCAGT 43258 ||| GTG....... .......... .......... .......... .......... .......... 431 AAATTTGAAT TTTCCATGTC TTTGAAGGTA GCTCGTGGTG ATAAAAGTGG AGAAGATGGT 43318 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTA GCTCGTGGTG ATAAAAGTGG AGAAGATGGT 464 ATTCCAATGC TGCTGAAGAT TCCACGACTA TTTGATCCAT GGGGTGGTTA CAGCATTATC 43378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCAATGC TGCTGAAGAT TCCACGACTA TTTGATCCAT GGGGTGGTTA CAGCATTATC 524 GGCTTTGGTG ACATCCTATT GCCTGGACTG CTAGTAGCAT TTTCACTTAG GTCTGCACTT 43438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGGTG ACATCCTATT GCCTGGACTG CTAGTAGCAT TTTCACTTAG .......... 574 CCGATTTTCA CCATACAAAG CTTTGAATTT GTTCCTCTAT ATATGCAGTC TATAAGGTTT 43498 .......... .......... .......... .......... .......... .......... 574 TCTTTGGGAG GGTAAGTCGA GTGGTAGAAT ATGGTTTTGT ATTTAGGCTT GGGACTTGAC 43558 .......... .......... .......... .......... .......... .......... 574 TCACAGCTAA AACAGTCTCC AGAAATGAGC TAACCTGTTT CCCTTTCGTA ATTTAGTTGT 43618 .......... .......... .......... .......... .......... .......... 574 CTTTTCTGTC ATGACATAGC AAATACACAA CTTTAATGTT CCGATAAAAA AAAAAACACA 43678 .......... .......... .......... .......... .......... .......... 574 GAGAGATCTC GGACACTGAT TCCAGAATTA TTGTTTATTT TGGGTCGTCA ATGAAATTTG 43738 .......... .......... .......... .......... .......... .......... 574 TTCCTTTGCA GGTATGATTG GCTTGCAAAG AAGAATCTTC GAGCTGGTTA CTTCTTGTGG 43798 ||||||||| ||||||||| || ||||||| |||||||||| |||||||||| .......... .GTATGATTG GCTTGCAAAA AAAAATCTTC GAGCTGGTTA CTTCTTGTGG 623 GCAATGATTG CATATGG 43815 |||||||||| ||||||| GCAATGATTG CATATGG 640 hqPGS_C08SLe0084H03.1+_SGN-E393966+ (40739 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43815) ******************************************************************************** EST sequence 20 +strand 555 n (File: SGN-E202287+) 1 TCTAGTTTTC TTGTTTGTTT TGTACAAGTT AATGAGGTTC ACATGGTTCT TTGAAATCTT 61 AGTGGTTCTC TTCTGCATCG GTGGTGTGGA GGGGCTACAA ACTTGCTTAG TTGCCTTGCT 121 AGCTAGGTGG TTTAAGCCTA CGGGAGAGTC ATACATTAAA GTACCCATTT TTGGTGCAGT 181 TTCTTATCTT ACTTTGGCTG TTTCGCCATT CTGCATAACT TTTGCAGTGG TTTGGGCAAT 241 GTACAGAAAT TCTATTTTTG GCTGGATAGG TCAAGACATA CTTGGCATTG CACTTATAAT 301 TACAGTTCTG CAAATTGTGC GGATACCTAA TCTCAAGGTT GGTTCAGTTC TTTTGGGTTG 361 CGCCTTCATC TACGACATAT TTTGGGTATT TGCTTCTCAG AGTCTCTTCC ATGAAAGTGT 421 GATGATTGTG GAAGCTCGTG GCGATAAAAG TGGAGAAGAT GGTATTCCAA TGCTGCTGAA 481 GATTGCACGA CTATTTGATC CATGGGGTGG TTACAGCATT ATCGGCTTTG GTGACATCCT 541 ATTGTCTGGA CTGCT Predicted gene structure (within gDNA segment 40077 to 44119): Exon 1 40741 40830 ( 90 n); cDNA 1 91 ( 91 n); score: 0.950 Intron 1 40831 41482 ( 652 n); Pd: 0.943 (s: 1.00), Pa: 0.996 (s: 0) Exon 2 41483 41517 ( 35 n); cDNA 92 126 ( 35 n); score: 1.000 Intron 2 41518 42008 ( 491 n); Pd: 0.938 (s: 0), Pa: 0.998 (s: 1.00) Exon 3 42009 42165 ( 157 n); cDNA 127 283 ( 157 n); score: 0.987 Intron 3 42166 42596 ( 431 n); Pd: 0.995 (s: 0.96), Pa: 0.994 (s: 1.00) Exon 4 42597 42650 ( 54 n); cDNA 284 337 ( 54 n); score: 1.000 Intron 4 42651 43108 ( 458 n); Pd: 0.836 (s: 1.00), Pa: 0.551 (s: 1.00) Exon 5 43109 43201 ( 93 n); cDNA 338 430 ( 93 n); score: 1.000 Intron 5 43202 43285 ( 84 n); Pd: 0.403 (s: 1.00), Pa: 0.996 (s: 0.96) Exon 6 43286 43410 ( 125 n); cDNA 431 555 ( 125 n); score: 0.968 MATCH C08SLe0084H03.1+ SGN-E202287+ 0.980 554 0.998 C PGS_C08SLe0084H03.1+_SGN-E202287+ (40741 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43410) Alignment (genomic DNA sequence = upper lines): TCTTG-CTTC TTGTTTGTTT TGTACAAGTT AATGAGGTTC ACATGGTTCT TTGAAATCTT 40799 ||| | ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAGTTTTC TTGTTTGTTT TGTACAAGTT AATGAGGTTC ACATGGTTCT TTGAAATCTT 60 AGTGGTTCTC TTCTGCATCG GTGGTGTGGA GGTGCGTGTT GTTGCTTTGA TATGTTATTT 40859 |||||||||| |||||||||| |||||||||| | AGTGGTTCTC TTCTGCATCG GTGGTGTGGA G......... .......... .......... 91 ATCATAAATG ATGAATTTGC AATTACCTTC TTGAATACTT TAGCCCATAG ATTTGTGTTG 40919 .......... .......... .......... .......... .......... .......... 91 GCAGATGATA TACTTGTCCA TATTTGACCG CCTTAGATAA TTATAATGGG ATAACACTTC 40979 .......... .......... .......... .......... .......... .......... 91 AGGCAGGAAA TTGGTGCACC TTGAGGGTAC ACATGTCTTC TTAAATATAT GTGTCCAGGA 41039 .......... .......... .......... .......... .......... .......... 91 TTAGGAGGAG CAATGTTGAA AATGTTATAA CTTCTATGAT GCGTATACAG GATATGATAA 41099 .......... .......... .......... .......... .......... .......... 91 GCGACATTAT TGTCTTATGC TAATTCTATT CTAATTGATA GCACTACCTT GAAATTTGTA 41159 .......... .......... .......... .......... .......... .......... 91 TCCATATATA AGAAAACCAC AAGATAGTGT AAGGTTCATT CGTGATTTGC ATTATCTCTT 41219 .......... .......... .......... .......... .......... .......... 91 CAGATAAAAA ATATGAACTT ATGATTAGTT AGTGTTCAGT AAGGCCCCAT ATTATTTTAA 41279 .......... .......... .......... .......... .......... .......... 91 ATCAGTTATT TGTAAACCTT TCAAAAATAA ATAAATAAAT AAATTTTGCA TACATATGAA 41339 .......... .......... .......... .......... .......... .......... 91 TGTATTGTCA ACTTATTTCT TTTAGAAAAG CAGATCTCTA ATTCTATTAT ATTTATATTA 41399 .......... .......... .......... .......... .......... .......... 91 TTTATCTGTT CCTCTCTTTC TATGACCTTG TTCTGGATTC CACAATCTGT TAAAACACTT 41459 .......... .......... .......... .......... .......... .......... 91 GTTTTGGTTC CTTTCATGTG CAGGGGCTAC AAACTTGCTT AGTTGCCTTG CTAGCTAGGT 41519 ||||||| |||||||||| |||||||||| |||||||| .......... .......... ...GGGCTAC AAACTTGCTT AGTTGCCTTG CTAGCTAG.. 126 ATGGTTAGTT CCACTTTAGT TGCGTTATAC ATAGTGTAAT TTGCTGTCTC TCTTTTTTTA 41579 .......... .......... .......... .......... .......... .......... 126 ATTTTTAAAC AAGTTAAGGT AATAGTGTAA TTCTCTGTCC CTGAAGTTAC CATCATGCCT 41639 .......... .......... .......... .......... .......... .......... 126 TTACATAGTG TAATTTGCTG TCTCTCTTTT TTTAATTTTT AAACAAGTTA AGGTAATAGT 41699 .......... .......... .......... .......... .......... .......... 126 GTAATTCTCT GTCCCTGAAG TTACCATCAT GCCTTTTGCG CAACTCTACA TTTTTACTAC 41759 .......... .......... .......... .......... .......... .......... 126 ACAATTAGGA TGGACAAATG AGCTGTTTTA GTTGTTAAGG AATCCAGCTT TAAGTTGTGT 41819 .......... .......... .......... .......... .......... .......... 126 GATGAGAGAA ATTGCTGGCA TTTTCTTAAT TGGTAAATTC TTTTGTTGTA TGAAAAAATC 41879 .......... .......... .......... .......... .......... .......... 126 TTTAGATGTG ACCTCTCATT TCAAGCATAA GCATAACCAT ATCAGAAGTG GAAAGTTATT 41939 .......... .......... .......... .......... .......... .......... 126 TCATCTTTCC AGCATCGGAA GTTCTGTTAC CCAAGTCTAA TCGTTTCATG TGCTTTGTTC 41999 .......... .......... .......... .......... .......... .......... 126 TTTTTTCAGG TGGTTTAAGC CTACGGGAGA GTCATACATT AAAGTACCCA TTTTTGGTGC 42059 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TGGTTTAAGC CTACGGGAGA GTCATACATT AAAGTACCCA TTTTTGGTGC 177 AGTTTCTTAT CTTACTTTGG CTGTTTCGCC ATTCTGCATA ACTTTTGCAG TGGTTTGGGC 42119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTCTTAT CTTACTTTGG CTGTTTCGCC ATTCTGCATA ACTTTTGCAG TGGTTTGGGC 237 AATGTACAGA AATTCTTCTT TTGGCTGGAT AGGTCAAGAC ATACTTGTAA GCAACATTTC 42179 |||||||||| |||||| || |||||||||| |||||||||| |||||| AATGTACAGA AATTCTATTT TTGGCTGGAT AGGTCAAGAC ATACTT.... .......... 283 TTTCTGTTTC CTTTTTTAGC AATATTTATT TTTTCATTTA AATGCTAGTT TACTTCATAT 42239 .......... .......... .......... .......... .......... .......... 283 CCCGTGCAAA CTTTTTTTTT CCTTATAAAA AAGGTCTCTT GAAATTTGAG TGTTATGCAT 42299 .......... .......... .......... .......... .......... .......... 283 TATCAAATTT ATACACAAAT GACAGTTGTG ATTGGTATAA ACAAGAGATT TTACCACTGG 42359 .......... .......... .......... .......... .......... .......... 283 ATTTTTGTCC TTTTACTTTA TTGTTTGCTC ACCAAAGTCC AAAGTTGGAT TTCGGCATCC 42419 .......... .......... .......... .......... .......... .......... 283 TAAGATGTTT GACACCAATA CGTTTACTGC TGTATTCCAT ACAACTTTCA CAAATTTAAA 42479 .......... .......... .......... .......... .......... .......... 283 ATTCAAATAT ATTTAACACG AGTGTATCCG ATTTTCCATT GCTTAACATG TAGACTGTTT 42539 .......... .......... .......... .......... .......... .......... 283 ATTTACTGTT TTGTGGTATA TCAACTGATG ATCTTTACTT TTTTTCCTTT TGGATAGGGC 42599 ||| .......... .......... .......... .......... .......... .......GGC 286 ATTGCACTTA TAATTACAGT TCTGCAAATT GTGCGGATAC CTAATCTCAA GGTGAACAAT 42659 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ATTGCACTTA TAATTACAGT TCTGCAAATT GTGCGGATAC CTAATCTCAA G......... 337 TTTACCAACC AAGAATTAAA TGGAACGGAC TGTATTTCCT TGCATGAATA TGTTCAGTTG 42719 .......... .......... .......... .......... .......... .......... 337 ATCTCATCTT GTAAATTATC TTATAGCCAT GCCTGGTTTA AGTTGGTGAC TTCTTTTTAC 42779 .......... .......... .......... .......... .......... .......... 337 TTGTTATCGT AAGTTGCATA TTCTTTCTAG TGGCACAAAG AACATACACA CACAGAAGCA 42839 .......... .......... .......... .......... .......... .......... 337 AGCATTGTTA TTACATTAAC AAAATGTTTA TTTTTCAACC GTAGTTCAAG GATTGATACT 42899 .......... .......... .......... .......... .......... .......... 337 AGAAATAGTG GGCAAGTTTG TTTATAAAAA ATCAACAAAA TTTTTTTGAG AGATTTTCTT 42959 .......... .......... .......... .......... .......... .......... 337 CTTCAGTTGT TCGAAGGTCA CTGCTTCGGG TGTTTATTAT CTTAATTGCC GCATATTGAT 43019 .......... .......... .......... .......... .......... .......... 337 GCTCACTCTA CTGACGTGTC TCTTTTACAG CACAGATTTT ACTATGATCT TGTCATCTCA 43079 .......... .......... .......... .......... .......... .......... 337 TATAAATATT AACTAGTATT AAATATCAGG TTGGTTCAGT TCTTTTGGGT TGCGCCTTCA 43139 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTGGTTCAGT TCTTTTGGGT TGCGCCTTCA 368 TCTACGACAT ATTTTGGGTA TTTGCTTCTC AGAGTCTCTT CCATGAAAGT GTGATGATTG 43199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACGACAT ATTTTGGGTA TTTGCTTCTC AGAGTCTCTT CCATGAAAGT GTGATGATTG 428 TGGTAGGTAA TCATTTAAGA CTACTTGACG ATAGGAGTTG TTTCTAGATA TAAGTCAGTA 43259 || TG........ .......... .......... .......... .......... .......... 430 AATTTGAATT TTCCATGTCT TTGAAGGTAG CTCGTGGTGA TAAAAGTGGA GAAGATGGTA 43319 | || ||||||| || |||||||||| |||||||||| .......... .......... ......GAAG CTCGTGGCGA TAAAAGTGGA GAAGATGGTA 464 TTCCAATGCT GCTGAAGATT CCACGACTAT TTGATCCATG GGGTGGTTAC AGCATTATCG 43379 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTCCAATGCT GCTGAAGATT GCACGACTAT TTGATCCATG GGGTGGTTAC AGCATTATCG 524 GCTTTGGTGA CATCCTATTG CCTGGACTGC T 43410 |||||||||| |||||||||| ||||||||| | GCTTTGGTGA CATCCTATTG TCTGGACTGC T 555 hqPGS_C08SLe0084H03.1+_SGN-E202287+ (40741 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43410) ******************************************************************************** EST sequence 73 +strand 848 n (File: SGN-E557064+) 1 GTGTGGAGGG GCTACAAACT TGCTTAGTTG CCTTGCTAGC TAGGTGGTTT AAGCCTACGG 61 GAGAGTCATA CATTAAAGTA CCCATTTTTG GTGCAGTTTC TTATCTTACT TTGGCTGTTT 121 CGCCATTCTG CATAACTTTT GCAGTGGTTT GGGCAATGTA CAGAAATTCT TCTTTTGGCT 181 GGATAGGTCA AGACATACTT GGCATTGCAC TTATAATTAC AGTTCTGCAA ATTGTGCGGA 241 TACCTAATCT CAAGGTTGGT TCAGTTCTTT TGGGTTGCGC CTTCATCTAC GACATATTTT 301 GGGTATTTGC TTCTCAGAGT CTCTTCCATG AAAGTGTGAT GATTGTGGTA GCTCGTGGTG 361 ATAAAAGTGG AGAAGATGGT ATTCCAATGC TGCTGAAGAT TCCACGACTA TTTGATCCAT 421 GGGGTGGTTA CAGCATTATC GGCTTTGGTG ACATCCTATT GCCTGGACTG CTAGTAGCAT 481 TTTCACTTAG GTATGATTGG CTTGCAAAGA AGAATCTTCG AGCTGGTTAC TTCTTGTGGG 541 CAATGATTGC ATATGGATTA GGTCTTCTTA TAACATATGT AGCATTGAAC TTAATGGATG 601 GTCATGGCCA ACCTGCACTT CTTTACATCG TCCCATTTAC CCTCGGGACC TTTTTGATGC 661 TGGGGAGAAA GAGAGGTGAC CTGAAAATTC TTTGGACAAA GGGTGAACCA GAAAGGGTGT 721 GTCCACATGT TCGTCTCGAA TCAATCGAGG AATCGAATCG AGAAGGATAA AGATAATCTT 781 CCTCTTGTAA ATATATAACT ACATACTGAC CTAAATGTTA TCAATCATTC ATCATTCTGG 841 TATTATTT Predicted gene structure (within gDNA segment 40821 to 45009): Exon 1 41476 41517 ( 42 n); cDNA 2 43 ( 42 n); score: 0.976 Intron 1 41518 42008 ( 491 n); Pd: 0.938 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 2 42009 42165 ( 157 n); cDNA 44 200 ( 157 n); score: 1.000 Intron 2 42166 42596 ( 431 n); Pd: 0.995 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 42597 42650 ( 54 n); cDNA 201 254 ( 54 n); score: 1.000 Intron 3 42651 43108 ( 458 n); Pd: 0.836 (s: 1.00), Pa: 0.551 (s: 1.00) Exon 4 43109 43201 ( 93 n); cDNA 255 347 ( 93 n); score: 1.000 Intron 4 43202 43285 ( 84 n); Pd: 0.403 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 43286 43428 ( 143 n); cDNA 348 490 ( 143 n); score: 1.000 Intron 5 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 43750 43820 ( 71 n); cDNA 491 561 ( 71 n); score: 1.000 Intron 6 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 7 43916 43999 ( 84 n); cDNA 562 645 ( 84 n); score: 1.000 Intron 7 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 8 44197 44399 ( 203 n); cDNA 646 848 ( 203 n); score: 0.990 MATCH C08SLe0084H03.1+ SGN-E557064+ 0.998 847 0.999 C PGS_C08SLe0084H03.1+_SGN-E557064+ (41476 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43820,43916 43999,44197 44399) Alignment (genomic DNA sequence = upper lines): TGTGCAGGGG CTACAAACTT GCTTAGTTGC CTTGCTAGCT AGGTATGGTT AGTTCCACTT 41535 |||| ||||| |||||||||| |||||||||| |||||||||| || TGTGGAGGGG CTACAAACTT GCTTAGTTGC CTTGCTAGCT AG........ .......... 43 TAGTTGCGTT ATACATAGTG TAATTTGCTG TCTCTCTTTT TTTAATTTTT AAACAAGTTA 41595 .......... .......... .......... .......... .......... .......... 43 AGGTAATAGT GTAATTCTCT GTCCCTGAAG TTACCATCAT GCCTTTACAT AGTGTAATTT 41655 .......... .......... .......... .......... .......... .......... 43 GCTGTCTCTC TTTTTTTAAT TTTTAAACAA GTTAAGGTAA TAGTGTAATT CTCTGTCCCT 41715 .......... .......... .......... .......... .......... .......... 43 GAAGTTACCA TCATGCCTTT TGCGCAACTC TACATTTTTA CTACACAATT AGGATGGACA 41775 .......... .......... .......... .......... .......... .......... 43 AATGAGCTGT TTTAGTTGTT AAGGAATCCA GCTTTAAGTT GTGTGATGAG AGAAATTGCT 41835 .......... .......... .......... .......... .......... .......... 43 GGCATTTTCT TAATTGGTAA ATTCTTTTGT TGTATGAAAA AATCTTTAGA TGTGACCTCT 41895 .......... .......... .......... .......... .......... .......... 43 CATTTCAAGC ATAAGCATAA CCATATCAGA AGTGGAAAGT TATTTCATCT TTCCAGCATC 41955 .......... .......... .......... .......... .......... .......... 43 GGAAGTTCTG TTACCCAAGT CTAATCGTTT CATGTGCTTT GTTCTTTTTT CAGGTGGTTT 42015 ||||||| .......... .......... .......... .......... .......... ...GTGGTTT 50 AAGCCTACGG GAGAGTCATA CATTAAAGTA CCCATTTTTG GTGCAGTTTC TTATCTTACT 42075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCTACGG GAGAGTCATA CATTAAAGTA CCCATTTTTG GTGCAGTTTC TTATCTTACT 110 TTGGCTGTTT CGCCATTCTG CATAACTTTT GCAGTGGTTT GGGCAATGTA CAGAAATTCT 42135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTGTTT CGCCATTCTG CATAACTTTT GCAGTGGTTT GGGCAATGTA CAGAAATTCT 170 TCTTTTGGCT GGATAGGTCA AGACATACTT GTAAGCAACA TTTCTTTCTG TTTCCTTTTT 42195 |||||||||| |||||||||| |||||||||| TCTTTTGGCT GGATAGGTCA AGACATACTT .......... .......... .......... 200 TAGCAATATT TATTTTTTCA TTTAAATGCT AGTTTACTTC ATATCCCGTG CAAACTTTTT 42255 .......... .......... .......... .......... .......... .......... 200 TTTTCCTTAT AAAAAAGGTC TCTTGAAATT TGAGTGTTAT GCATTATCAA ATTTATACAC 42315 .......... .......... .......... .......... .......... .......... 200 AAATGACAGT TGTGATTGGT ATAAACAAGA GATTTTACCA CTGGATTTTT GTCCTTTTAC 42375 .......... .......... .......... .......... .......... .......... 200 TTTATTGTTT GCTCACCAAA GTCCAAAGTT GGATTTCGGC ATCCTAAGAT GTTTGACACC 42435 .......... .......... .......... .......... .......... .......... 200 AATACGTTTA CTGCTGTATT CCATACAACT TTCACAAATT TAAAATTCAA ATATATTTAA 42495 .......... .......... .......... .......... .......... .......... 200 CACGAGTGTA TCCGATTTTC CATTGCTTAA CATGTAGACT GTTTATTTAC TGTTTTGTGG 42555 .......... .......... .......... .......... .......... .......... 200 TATATCAACT GATGATCTTT ACTTTTTTTC CTTTTGGATA GGGCATTGCA CTTATAATTA 42615 ||||||||| |||||||||| .......... .......... .......... .......... .GGCATTGCA CTTATAATTA 219 CAGTTCTGCA AATTGTGCGG ATACCTAATC TCAAGGTGAA CAATTTTACC AACCAAGAAT 42675 |||||||||| |||||||||| |||||||||| ||||| CAGTTCTGCA AATTGTGCGG ATACCTAATC TCAAG..... .......... .......... 254 TAAATGGAAC GGACTGTATT TCCTTGCATG AATATGTTCA GTTGATCTCA TCTTGTAAAT 42735 .......... .......... .......... .......... .......... .......... 254 TATCTTATAG CCATGCCTGG TTTAAGTTGG TGACTTCTTT TTACTTGTTA TCGTAAGTTG 42795 .......... .......... .......... .......... .......... .......... 254 CATATTCTTT CTAGTGGCAC AAAGAACATA CACACACAGA AGCAAGCATT GTTATTACAT 42855 .......... .......... .......... .......... .......... .......... 254 TAACAAAATG TTTATTTTTC AACCGTAGTT CAAGGATTGA TACTAGAAAT AGTGGGCAAG 42915 .......... .......... .......... .......... .......... .......... 254 TTTGTTTATA AAAAATCAAC AAAATTTTTT TGAGAGATTT TCTTCTTCAG TTGTTCGAAG 42975 .......... .......... .......... .......... .......... .......... 254 GTCACTGCTT CGGGTGTTTA TTATCTTAAT TGCCGCATAT TGATGCTCAC TCTACTGACG 43035 .......... .......... .......... .......... .......... .......... 254 TGTCTCTTTT ACAGCACAGA TTTTACTATG ATCTTGTCAT CTCATATAAA TATTAACTAG 43095 .......... .......... .......... .......... .......... .......... 254 TATTAAATAT CAGGTTGGTT CAGTTCTTTT GGGTTGCGCC TTCATCTACG ACATATTTTG 43155 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTTGGTT CAGTTCTTTT GGGTTGCGCC TTCATCTACG ACATATTTTG 301 GGTATTTGCT TCTCAGAGTC TCTTCCATGA AAGTGTGATG ATTGTGGTAG GTAATCATTT 43215 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGTATTTGCT TCTCAGAGTC TCTTCCATGA AAGTGTGATG ATTGTG.... .......... 347 AAGACTACTT GACGATAGGA GTTGTTTCTA GATATAAGTC AGTAAATTTG AATTTTCCAT 43275 .......... .......... .......... .......... .......... .......... 347 GTCTTTGAAG GTAGCTCGTG GTGATAAAAG TGGAGAAGAT GGTATTCCAA TGCTGCTGAA 43335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTAGCTCGTG GTGATAAAAG TGGAGAAGAT GGTATTCCAA TGCTGCTGAA 397 GATTCCACGA CTATTTGATC CATGGGGTGG TTACAGCATT ATCGGCTTTG GTGACATCCT 43395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCACGA CTATTTGATC CATGGGGTGG TTACAGCATT ATCGGCTTTG GTGACATCCT 457 ATTGCCTGGA CTGCTAGTAG CATTTTCACT TAGGTCTGCA CTTCCGATTT TCACCATACA 43455 |||||||||| |||||||||| |||||||||| ||| ATTGCCTGGA CTGCTAGTAG CATTTTCACT TAG....... .......... .......... 490 AAGCTTTGAA TTTGTTCCTC TATATATGCA GTCTATAAGG TTTTCTTTGG GAGGGTAAGT 43515 .......... .......... .......... .......... .......... .......... 490 CGAGTGGTAG AATATGGTTT TGTATTTAGG CTTGGGACTT GACTCACAGC TAAAACAGTC 43575 .......... .......... .......... .......... .......... .......... 490 TCCAGAAATG AGCTAACCTG TTTCCCTTTC GTAATTTAGT TGTCTTTTCT GTCATGACAT 43635 .......... .......... .......... .......... .......... .......... 490 AGCAAATACA CAACTTTAAT GTTCCGATAA AAAAAAAAAC ACAGAGAGAT CTCGGACACT 43695 .......... .......... .......... .......... .......... .......... 490 GATTCCAGAA TTATTGTTTA TTTTGGGTCG TCAATGAAAT TTGTTCCTTT GCAGGTATGA 43755 |||||| .......... .......... .......... .......... .......... ....GTATGA 496 TTGGCTTGCA AAGAAGAATC TTCGAGCTGG TTACTTCTTG TGGGCAATGA TTGCATATGG 43815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTTGCA AAGAAGAATC TTCGAGCTGG TTACTTCTTG TGGGCAATGA TTGCATATGG 556 ATTAGGTACT TAACGATATC TTCTATAGAT TAAGCCTATT GCTTGAGTTG GAGTTTTTTC 43875 ||||| ATTAG..... .......... .......... .......... .......... .......... 561 TGTTCTACAA ATTTGAATAT ATTCTCTTGA TACATTGCAG GTCTTCTTAT AACATATGTA 43935 |||||||||| |||||||||| .......... .......... .......... .......... GTCTTCTTAT AACATATGTA 581 GCATTGAACT TAATGGATGG TCATGGCCAA CCTGCACTTC TTTACATCGT CCCATTTACC 43995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTGAACT TAATGGATGG TCATGGCCAA CCTGCACTTC TTTACATCGT CCCATTTACC 641 CTCGGTAATT CTCATCATAT ACTACTTTTT AAGTCGTAAT GTAACATTGT TTTTGGTAAC 44055 |||| CTCG...... .......... .......... .......... .......... .......... 645 TAAACACCGT AAACGACTCT CCTATGGAGA CCATTTTCTT GGAAAATGAC TTCTGTCTTA 44115 .......... .......... .......... .......... .......... .......... 645 CCAAACACAT TTCCTAAATC TGCATGAACA AGGAGTTCCT AGTTTCACAA TCACCGGACC 44175 .......... .......... .......... .......... .......... .......... 645 GATCTATACA TCTTTGTGCA GGGACCTTTT TGATGCTGGG GAGAAAGAGA GGTGACCTGA 44235 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GGACCTTTT TGATGCTGGG GAGAAAGAGA GGTGACCTGA 684 AAATTCTTTG GACAAAGGGT GAACCAGAAA GGGTGTGTCC ACATGTTCGT CTCGAATCAA 44295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCTTTG GACAAAGGGT GAACCAGAAA GGGTGTGTCC ACATGTTCGT CTCGAATCAA 744 TCGAGGAATC GAATCGAGAA GGATAAGGAT AATCTTCCTC TTGTAATTAT ATAACTACAT 44355 |||||||||| |||||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| TCGAGGAATC GAATCGAGAA GGATAAAGAT AATCTTCCTC TTGTAAATAT ATAACTACAT 804 ACTGACCTAA ATGTTATCAA TCATTCATCA TTCTGGTATT ATTT 44399 |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTGACCTAA ATGTTATCAA TCATTCATCA TTCTGGTATT ATTT 848 hqPGS_C08SLe0084H03.1+_SGN-E557064+ (41476 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43820,43916 43999,44197 44399) ******************************************************************************** EST sequence 25 +strand 731 n (File: SGN-E347939+) 1 GACATACTTG GCATTGCACT TATAATTACA GTTCTGCAAA TTGTGCGGAT ACCTAATCTC 61 AAGGTTGGTT CAGTTCTTTT GGGTTGCGCC TTCATCTACG ACATATTTTG GGTATTTGCT 121 TCTCAGAGTC TCTTCCATGA AAGTGTGATG ATTGTGCTCG TGGTGATAAA AGTGGAGAAG 181 ATGGTATTCC AATGCTGCTG AAGATTCCAC GACTATTTGA TCCATGGGGT GGTTACAGCA 241 TTATCGGCTT TGGTGACATC CTATTGCCTG GACTGCTAGT AGCATTTTCA CTTAGGTATG 301 ATTGGCTTGC AAAGAAGAAT CTTCGAGCTG GTTACTTCTT GTGGGCAATG ATTGCATATG 361 GATTAGGTCT TCTTATAACA TATGTAGCAT TGAACTTAAT GGATGGTCAT GGCCAACCTG 421 CACTTCTTTA CATCGTCCCA TTTACCCTCG GGACCTTTTT GATGCTGGGG AGAAAGAGAG 481 GTGACCTGAA AATTCTTTGG ACAAAGGGTG AACCAGAAAG GGTGTGTCCA CATGTTCGTC 541 TCGAATCAAT CGAGGAATCG AATCGAGAAG GATAAGGATA ATCTTCCTCT TGTAATTATA 601 TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 661 TTAAGGCTTA GCAAAATCTT CAGTTGTTAA GTACACACAC ATTTGATATG CCAGTTATTA 721 ATGTACAGCT G Predicted gene structure (within gDNA segment 41907 to 45087): Exon 1 42157 42165 ( 9 n); cDNA 1 9 ( 9 n); score: 1.000 Intron 1 42166 42596 ( 431 n); Pd: 0.995 (s: 0), Pa: 0.994 (s: 1.00) Exon 2 42597 42650 ( 54 n); cDNA 10 63 ( 54 n); score: 1.000 Intron 2 42651 43108 ( 458 n); Pd: 0.836 (s: 1.00), Pa: 0.551 (s: 1.00) Exon 3 43109 43201 ( 93 n); cDNA 64 156 ( 93 n); score: 1.000 Intron 3 43202 43289 ( 88 n); Pd: 0.403 (s: 1.00), Pa: 0.798 (s: 1.00) Exon 4 43290 43428 ( 139 n); cDNA 157 295 ( 139 n); score: 1.000 Intron 4 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 43750 43820 ( 71 n); cDNA 296 366 ( 71 n); score: 1.000 Intron 5 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 43916 43999 ( 84 n); cDNA 367 450 ( 84 n); score: 1.000 Intron 6 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 7 44197 44477 ( 281 n); cDNA 451 731 ( 281 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E347939+ 1.000 731 1.000 C PGS_C08SLe0084H03.1+_SGN-E347939+ (42157 42165,42597 42650,43109 43201,43290 43428,43750 43820,43916 43999,44197 44477) Alignment (genomic DNA sequence = upper lines): GACATACTTG TAAGCAACAT TTCTTTCTGT TTCCTTTTTT AGCAATATTT ATTTTTTCAT 42216 ||||||||| GACATACTT. .......... .......... .......... .......... .......... 9 TTAAATGCTA GTTTACTTCA TATCCCGTGC AAACTTTTTT TTTCCTTATA AAAAAGGTCT 42276 .......... .......... .......... .......... .......... .......... 9 CTTGAAATTT GAGTGTTATG CATTATCAAA TTTATACACA AATGACAGTT GTGATTGGTA 42336 .......... .......... .......... .......... .......... .......... 9 TAAACAAGAG ATTTTACCAC TGGATTTTTG TCCTTTTACT TTATTGTTTG CTCACCAAAG 42396 .......... .......... .......... .......... .......... .......... 9 TCCAAAGTTG GATTTCGGCA TCCTAAGATG TTTGACACCA ATACGTTTAC TGCTGTATTC 42456 .......... .......... .......... .......... .......... .......... 9 CATACAACTT TCACAAATTT AAAATTCAAA TATATTTAAC ACGAGTGTAT CCGATTTTCC 42516 .......... .......... .......... .......... .......... .......... 9 ATTGCTTAAC ATGTAGACTG TTTATTTACT GTTTTGTGGT ATATCAACTG ATGATCTTTA 42576 .......... .......... .......... .......... .......... .......... 9 CTTTTTTTCC TTTTGGATAG GGCATTGCAC TTATAATTAC AGTTCTGCAA ATTGTGCGGA 42636 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GGCATTGCAC TTATAATTAC AGTTCTGCAA ATTGTGCGGA 49 TACCTAATCT CAAGGTGAAC AATTTTACCA ACCAAGAATT AAATGGAACG GACTGTATTT 42696 |||||||||| |||| TACCTAATCT CAAG...... .......... .......... .......... .......... 63 CCTTGCATGA ATATGTTCAG TTGATCTCAT CTTGTAAATT ATCTTATAGC CATGCCTGGT 42756 .......... .......... .......... .......... .......... .......... 63 TTAAGTTGGT GACTTCTTTT TACTTGTTAT CGTAAGTTGC ATATTCTTTC TAGTGGCACA 42816 .......... .......... .......... .......... .......... .......... 63 AAGAACATAC ACACACAGAA GCAAGCATTG TTATTACATT AACAAAATGT TTATTTTTCA 42876 .......... .......... .......... .......... .......... .......... 63 ACCGTAGTTC AAGGATTGAT ACTAGAAATA GTGGGCAAGT TTGTTTATAA AAAATCAACA 42936 .......... .......... .......... .......... .......... .......... 63 AAATTTTTTT GAGAGATTTT CTTCTTCAGT TGTTCGAAGG TCACTGCTTC GGGTGTTTAT 42996 .......... .......... .......... .......... .......... .......... 63 TATCTTAATT GCCGCATATT GATGCTCACT CTACTGACGT GTCTCTTTTA CAGCACAGAT 43056 .......... .......... .......... .......... .......... .......... 63 TTTACTATGA TCTTGTCATC TCATATAAAT ATTAACTAGT ATTAAATATC AGGTTGGTTC 43116 |||||||| .......... .......... .......... .......... .......... ..GTTGGTTC 71 AGTTCTTTTG GGTTGCGCCT TCATCTACGA CATATTTTGG GTATTTGCTT CTCAGAGTCT 43176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTTTTG GGTTGCGCCT TCATCTACGA CATATTTTGG GTATTTGCTT CTCAGAGTCT 131 CTTCCATGAA AGTGTGATGA TTGTGGTAGG TAATCATTTA AGACTACTTG ACGATAGGAG 43236 |||||||||| |||||||||| ||||| CTTCCATGAA AGTGTGATGA TTGTG..... .......... .......... .......... 156 TTGTTTCTAG ATATAAGTCA GTAAATTTGA ATTTTCCATG TCTTTGAAGG TAGCTCGTGG 43296 ||||||| .......... .......... .......... .......... .......... ...CTCGTGG 163 TGATAAAAGT GGAGAAGATG GTATTCCAAT GCTGCTGAAG ATTCCACGAC TATTTGATCC 43356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAAAAGT GGAGAAGATG GTATTCCAAT GCTGCTGAAG ATTCCACGAC TATTTGATCC 223 ATGGGGTGGT TACAGCATTA TCGGCTTTGG TGACATCCTA TTGCCTGGAC TGCTAGTAGC 43416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGGTGGT TACAGCATTA TCGGCTTTGG TGACATCCTA TTGCCTGGAC TGCTAGTAGC 283 ATTTTCACTT AGGTCTGCAC TTCCGATTTT CACCATACAA AGCTTTGAAT TTGTTCCTCT 43476 |||||||||| || ATTTTCACTT AG........ .......... .......... .......... .......... 295 ATATATGCAG TCTATAAGGT TTTCTTTGGG AGGGTAAGTC GAGTGGTAGA ATATGGTTTT 43536 .......... .......... .......... .......... .......... .......... 295 GTATTTAGGC TTGGGACTTG ACTCACAGCT AAAACAGTCT CCAGAAATGA GCTAACCTGT 43596 .......... .......... .......... .......... .......... .......... 295 TTCCCTTTCG TAATTTAGTT GTCTTTTCTG TCATGACATA GCAAATACAC AACTTTAATG 43656 .......... .......... .......... .......... .......... .......... 295 TTCCGATAAA AAAAAAAACA CAGAGAGATC TCGGACACTG ATTCCAGAAT TATTGTTTAT 43716 .......... .......... .......... .......... .......... .......... 295 TTTGGGTCGT CAATGAAATT TGTTCCTTTG CAGGTATGAT TGGCTTGCAA AGAAGAATCT 43776 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTATGAT TGGCTTGCAA AGAAGAATCT 322 TCGAGCTGGT TACTTCTTGT GGGCAATGAT TGCATATGGA TTAGGTACTT AACGATATCT 43836 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCGAGCTGGT TACTTCTTGT GGGCAATGAT TGCATATGGA TTAG...... .......... 366 TCTATAGATT AAGCCTATTG CTTGAGTTGG AGTTTTTTCT GTTCTACAAA TTTGAATATA 43896 .......... .......... .......... .......... .......... .......... 366 TTCTCTTGAT ACATTGCAGG TCTTCTTATA ACATATGTAG CATTGAACTT AATGGATGGT 43956 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TCTTCTTATA ACATATGTAG CATTGAACTT AATGGATGGT 407 CATGGCCAAC CTGCACTTCT TTACATCGTC CCATTTACCC TCGGTAATTC TCATCATATA 44016 |||||||||| |||||||||| |||||||||| |||||||||| ||| CATGGCCAAC CTGCACTTCT TTACATCGTC CCATTTACCC TCG....... .......... 450 CTACTTTTTA AGTCGTAATG TAACATTGTT TTTGGTAACT AAACACCGTA AACGACTCTC 44076 .......... .......... .......... .......... .......... .......... 450 CTATGGAGAC CATTTTCTTG GAAAATGACT TCTGTCTTAC CAAACACATT TCCTAAATCT 44136 .......... .......... .......... .......... .......... .......... 450 GCATGAACAA GGAGTTCCTA GTTTCACAAT CACCGGACCG ATCTATACAT CTTTGTGCAG 44196 .......... .......... .......... .......... .......... .......... 450 GGACCTTTTT GATGCTGGGG AGAAAGAGAG GTGACCTGAA AATTCTTTGG ACAAAGGGTG 44256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCTTTTT GATGCTGGGG AGAAAGAGAG GTGACCTGAA AATTCTTTGG ACAAAGGGTG 510 AACCAGAAAG GGTGTGTCCA CATGTTCGTC TCGAATCAAT CGAGGAATCG AATCGAGAAG 44316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCAGAAAG GGTGTGTCCA CATGTTCGTC TCGAATCAAT CGAGGAATCG AATCGAGAAG 570 GATAAGGATA ATCTTCCTCT TGTAATTATA TAACTACATA CTGACCTAAA TGTTATCAAT 44376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAGGATA ATCTTCCTCT TGTAATTATA TAACTACATA CTGACCTAAA TGTTATCAAT 630 CATTCATCAT TCTGGTATTA TTTAGCTGTT TTAAGGCTTA GCAAAATCTT CAGTTGTTAA 44436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCATCAT TCTGGTATTA TTTAGCTGTT TTAAGGCTTA GCAAAATCTT CAGTTGTTAA 690 GTACACACAC ATTTGATATG CCAGTTATTA ATGTACAGCT G 44477 |||||||||| |||||||||| |||||||||| |||||||||| | GTACACACAC ATTTGATATG CCAGTTATTA ATGTACAGCT G 731 hqPGS_C08SLe0084H03.1+_SGN-E347939+ (42597 42650,43109 43201,43290 43428,43750 43820,43916 43999,44197 44477) ******************************************************************************** EST sequence 81 +strand 385 n (File: SGN-E307890+) 1 GCTTCTCAGA GTCTCTTCCA TGAAAGTGTG ATGATTGTGG TAGCTCGTGG TGATAAAAGT 61 GGAGAAGATG GTATTCCAAT GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT 121 TACAGCATTA TCGGCTTTGG TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT 181 AGGTATGATT GGCTTGCAAA GAAGAATCTT CGAGCTGGTT ACTTCTTGTG GGCAATGATT 241 GCATATGGAT TAGGTCTTCT TATAACATAT GTAGCATTGA ACTTAATGGA TGGTCATGGC 301 CAACCTGCAC TTCTTTACAT CGTCCCATTT ACCCTCGGGA CCTTTTTGAT GCTGGGGAGA 361 AAGAGAGGTG ACCTGAAAAT TCTTT Predicted gene structure (within gDNA segment 42563 to 44854): Exon 1 43163 43201 ( 39 n); cDNA 1 39 ( 39 n); score: 1.000 Intron 1 43202 43285 ( 84 n); Pd: 0.403 (s: 0), Pa: 0.996 (s: 1.00) Exon 2 43286 43428 ( 143 n); cDNA 40 182 ( 143 n); score: 1.000 Intron 2 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 43750 43820 ( 71 n); cDNA 183 253 ( 71 n); score: 1.000 Intron 3 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 43916 43999 ( 84 n); cDNA 254 337 ( 84 n); score: 1.000 Intron 4 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 5 44197 44244 ( 48 n); cDNA 338 385 ( 48 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E307890+ 1.000 385 1.000 C PGS_C08SLe0084H03.1+_SGN-E307890+ (43163 43201,43286 43428,43750 43820,43916 43999,44197 44244) Alignment (genomic DNA sequence = upper lines): GCTTCTCAGA GTCTCTTCCA TGAAAGTGTG ATGATTGTGG TAGGTAATCA TTTAAGACTA 43222 |||||||||| |||||||||| |||||||||| ||||||||| GCTTCTCAGA GTCTCTTCCA TGAAAGTGTG ATGATTGTG. .......... .......... 39 CTTGACGATA GGAGTTGTTT CTAGATATAA GTCAGTAAAT TTGAATTTTC CATGTCTTTG 43282 .......... .......... .......... .......... .......... .......... 39 AAGGTAGCTC GTGGTGATAA AAGTGGAGAA GATGGTATTC CAATGCTGCT GAAGATTCCA 43342 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTAGCTC GTGGTGATAA AAGTGGAGAA GATGGTATTC CAATGCTGCT GAAGATTCCA 96 CGACTATTTG ATCCATGGGG TGGTTACAGC ATTATCGGCT TTGGTGACAT CCTATTGCCT 43402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACTATTTG ATCCATGGGG TGGTTACAGC ATTATCGGCT TTGGTGACAT CCTATTGCCT 156 GGACTGCTAG TAGCATTTTC ACTTAGGTCT GCACTTCCGA TTTTCACCAT ACAAAGCTTT 43462 |||||||||| |||||||||| |||||| GGACTGCTAG TAGCATTTTC ACTTAG.... .......... .......... .......... 182 GAATTTGTTC CTCTATATAT GCAGTCTATA AGGTTTTCTT TGGGAGGGTA AGTCGAGTGG 43522 .......... .......... .......... .......... .......... .......... 182 TAGAATATGG TTTTGTATTT AGGCTTGGGA CTTGACTCAC AGCTAAAACA GTCTCCAGAA 43582 .......... .......... .......... .......... .......... .......... 182 ATGAGCTAAC CTGTTTCCCT TTCGTAATTT AGTTGTCTTT TCTGTCATGA CATAGCAAAT 43642 .......... .......... .......... .......... .......... .......... 182 ACACAACTTT AATGTTCCGA TAAAAAAAAA AACACAGAGA GATCTCGGAC ACTGATTCCA 43702 .......... .......... .......... .......... .......... .......... 182 GAATTATTGT TTATTTTGGG TCGTCAATGA AATTTGTTCC TTTGCAGGTA TGATTGGCTT 43762 ||| |||||||||| .......... .......... .......... .......... .......GTA TGATTGGCTT 195 GCAAAGAAGA ATCTTCGAGC TGGTTACTTC TTGTGGGCAA TGATTGCATA TGGATTAGGT 43822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GCAAAGAAGA ATCTTCGAGC TGGTTACTTC TTGTGGGCAA TGATTGCATA TGGATTAG.. 253 ACTTAACGAT ATCTTCTATA GATTAAGCCT ATTGCTTGAG TTGGAGTTTT TTCTGTTCTA 43882 .......... .......... .......... .......... .......... .......... 253 CAAATTTGAA TATATTCTCT TGATACATTG CAGGTCTTCT TATAACATAT GTAGCATTGA 43942 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTCTTCT TATAACATAT GTAGCATTGA 280 ACTTAATGGA TGGTCATGGC CAACCTGCAC TTCTTTACAT CGTCCCATTT ACCCTCGGTA 44002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTTAATGGA TGGTCATGGC CAACCTGCAC TTCTTTACAT CGTCCCATTT ACCCTCG... 337 ATTCTCATCA TATACTACTT TTTAAGTCGT AATGTAACAT TGTTTTTGGT AACTAAACAC 44062 .......... .......... .......... .......... .......... .......... 337 CGTAAACGAC TCTCCTATGG AGACCATTTT CTTGGAAAAT GACTTCTGTC TTACCAAACA 44122 .......... .......... .......... .......... .......... .......... 337 CATTTCCTAA ATCTGCATGA ACAAGGAGTT CCTAGTTTCA CAATCACCGG ACCGATCTAT 44182 .......... .......... .......... .......... .......... .......... 337 ACATCTTTGT GCAGGGACCT TTTTGATGCT GGGGAGAAAG AGAGGTGACC TGAAAATTCT 44242 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GGACCT TTTTGATGCT GGGGAGAAAG AGAGGTGACC TGAAAATTCT 383 TT 44244 || TT 385 hqPGS_C08SLe0084H03.1+_SGN-E307890+ (43163 43201,43286 43428,43750 43820,43916 43999,44197 44244) ******************************************************************************** EST sequence 257 -strand 678 n (File: SGN-E397636-) 1 ATGAAAGTGT GATGATTGTG GTAGCTCGTG GTGATAAAAG TGGAGAAGAT GGTATTCCAA 61 TGCTGCTGAA GATTCCACGA CTATTTGATC CATGGGGTGG TTACAGCATT ATCGGCTTTG 121 GTGACATCCT ATTGCCTGGA CTGCTAGTAG CATTTTCACT TAGGTATGAT TGGCTTGCAA 181 AGAAGAATCT TCGAGCTGGT TACTTCTTGT GGGCAATGAT TGCATATGGA TTAGGTCTTC 241 TTATAACATA TGTAGCATTG AACTTAATGG ATGGTCATGG CCAACCTGCA CTTCTTTACA 301 TCGTCCCATT TACCCTCGGG ACCTTTTTGA TGCTGGGGAG AAAGAGAGGT GACCTGAAAA 361 TTCTTTGGAC AAAGGGTGAA CCAGAAAGGG TGTGTCCACA TGTTCGTCTC GAATCAATCG 421 AGGAATCGAA TCGAGAAGGA TAAGGATAAT CTTCCTCTTG TAATTATATA ACTACATACT 481 GACCTAAATG TTATCAATCA TTCATCATTC TGGTATTATT TAGCTGTTTT AAGGCTTAGC 541 AAAATCTTCA GTTGTTAAGT ACACACACAT TTGATATGCC AGTTATTAAT GTACAGCTGA 601 TTGATCAGCA TTTGTCACTT TGGTGAAAAA TAGTGCAGTT GCTGCTCAAC TTTTATTATT 661 GTCTAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 42485 to 45282): Exon 1 43182 43201 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 43202 43285 ( 84 n); Pd: 0.403 (s: 0), Pa: 0.996 (s: 1.00) Exon 2 43286 43428 ( 143 n); cDNA 21 163 ( 143 n); score: 1.000 Intron 2 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 43750 43820 ( 71 n); cDNA 164 234 ( 71 n); score: 1.000 Intron 3 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 43916 43999 ( 84 n); cDNA 235 318 ( 84 n); score: 1.000 Intron 4 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 5 44197 44542 ( 346 n); cDNA 319 664 ( 346 n); score: 1.000 PPA cDNA 665 678 MATCH C08SLe0084H03.1+ SGN-E397636- 1.000 664 0.979 C PGS_C08SLe0084H03.1+_SGN-E397636- (43182 43201,43286 43428,43750 43820,43916 43999,44197 44542) Alignment (genomic DNA sequence = upper lines): ATGAAAGTGT GATGATTGTG GTAGGTAATC ATTTAAGACT ACTTGACGAT AGGAGTTGTT 43241 |||||||||| |||||||||| ATGAAAGTGT GATGATTGTG .......... .......... .......... .......... 20 TCTAGATATA AGTCAGTAAA TTTGAATTTT CCATGTCTTT GAAGGTAGCT CGTGGTGATA 43301 |||||| |||||||||| .......... .......... .......... .......... ....GTAGCT CGTGGTGATA 36 AAAGTGGAGA AGATGGTATT CCAATGCTGC TGAAGATTCC ACGACTATTT GATCCATGGG 43361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGGAGA AGATGGTATT CCAATGCTGC TGAAGATTCC ACGACTATTT GATCCATGGG 96 GTGGTTACAG CATTATCGGC TTTGGTGACA TCCTATTGCC TGGACTGCTA GTAGCATTTT 43421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTTACAG CATTATCGGC TTTGGTGACA TCCTATTGCC TGGACTGCTA GTAGCATTTT 156 CACTTAGGTC TGCACTTCCG ATTTTCACCA TACAAAGCTT TGAATTTGTT CCTCTATATA 43481 ||||||| CACTTAG... .......... .......... .......... .......... .......... 163 TGCAGTCTAT AAGGTTTTCT TTGGGAGGGT AAGTCGAGTG GTAGAATATG GTTTTGTATT 43541 .......... .......... .......... .......... .......... .......... 163 TAGGCTTGGG ACTTGACTCA CAGCTAAAAC AGTCTCCAGA AATGAGCTAA CCTGTTTCCC 43601 .......... .......... .......... .......... .......... .......... 163 TTTCGTAATT TAGTTGTCTT TTCTGTCATG ACATAGCAAA TACACAACTT TAATGTTCCG 43661 .......... .......... .......... .......... .......... .......... 163 ATAAAAAAAA AAACACAGAG AGATCTCGGA CACTGATTCC AGAATTATTG TTTATTTTGG 43721 .......... .......... .......... .......... .......... .......... 163 GTCGTCAATG AAATTTGTTC CTTTGCAGGT ATGATTGGCT TGCAAAGAAG AATCTTCGAG 43781 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT ATGATTGGCT TGCAAAGAAG AATCTTCGAG 195 CTGGTTACTT CTTGTGGGCA ATGATTGCAT ATGGATTAGG TACTTAACGA TATCTTCTAT 43841 |||||||||| |||||||||| |||||||||| ||||||||| CTGGTTACTT CTTGTGGGCA ATGATTGCAT ATGGATTAG. .......... .......... 234 AGATTAAGCC TATTGCTTGA GTTGGAGTTT TTTCTGTTCT ACAAATTTGA ATATATTCTC 43901 .......... .......... .......... .......... .......... .......... 234 TTGATACATT GCAGGTCTTC TTATAACATA TGTAGCATTG AACTTAATGG ATGGTCATGG 43961 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTCTTC TTATAACATA TGTAGCATTG AACTTAATGG ATGGTCATGG 280 CCAACCTGCA CTTCTTTACA TCGTCCCATT TACCCTCGGT AATTCTCATC ATATACTACT 44021 |||||||||| |||||||||| |||||||||| |||||||| CCAACCTGCA CTTCTTTACA TCGTCCCATT TACCCTCG.. .......... .......... 318 TTTTAAGTCG TAATGTAACA TTGTTTTTGG TAACTAAACA CCGTAAACGA CTCTCCTATG 44081 .......... .......... .......... .......... .......... .......... 318 GAGACCATTT TCTTGGAAAA TGACTTCTGT CTTACCAAAC ACATTTCCTA AATCTGCATG 44141 .......... .......... .......... .......... .......... .......... 318 AACAAGGAGT TCCTAGTTTC ACAATCACCG GACCGATCTA TACATCTTTG TGCAGGGACC 44201 ||||| .......... .......... .......... .......... .......... .....GGACC 323 TTTTTGATGC TGGGGAGAAA GAGAGGTGAC CTGAAAATTC TTTGGACAAA GGGTGAACCA 44261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTGATGC TGGGGAGAAA GAGAGGTGAC CTGAAAATTC TTTGGACAAA GGGTGAACCA 383 GAAAGGGTGT GTCCACATGT TCGTCTCGAA TCAATCGAGG AATCGAATCG AGAAGGATAA 44321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGGTGT GTCCACATGT TCGTCTCGAA TCAATCGAGG AATCGAATCG AGAAGGATAA 443 GGATAATCTT CCTCTTGTAA TTATATAACT ACATACTGAC CTAAATGTTA TCAATCATTC 44381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATAATCTT CCTCTTGTAA TTATATAACT ACATACTGAC CTAAATGTTA TCAATCATTC 503 ATCATTCTGG TATTATTTAG CTGTTTTAAG GCTTAGCAAA ATCTTCAGTT GTTAAGTACA 44441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATTCTGG TATTATTTAG CTGTTTTAAG GCTTAGCAAA ATCTTCAGTT GTTAAGTACA 563 CACACATTTG ATATGCCAGT TATTAATGTA CAGCTGATTG ATCAGCATTT GTCACTTTGG 44501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACACATTTG ATATGCCAGT TATTAATGTA CAGCTGATTG ATCAGCATTT GTCACTTTGG 623 TGAAAAATAG TGCAGTTGCT GCTCAACTTT TATTATTGTC T 44542 |||||||||| |||||||||| |||||||||| |||||||||| | TGAAAAATAG TGCAGTTGCT GCTCAACTTT TATTATTGTC T 664 hqPGS_C08SLe0084H03.1+_SGN-E397636- (43286 43428,43750 43820,43916 43999,44197 44542) ******************************************************************************** EST sequence 251 -strand 648 n (File: SGN-E397533-) 1 GTGATAAAAG TGGAGAAGAT GGTATTCCAA TGCTGCTGAA GATTCCACGA CTATTTGATC 61 CATGGGGTGG TTACAGCATT ATCGGCTTTG GTGACATCCT ATTGCCTGGA CTGCTAGTAG 121 CATTTTCACT TAGGTATGAT TGGCTTGCAA AGAAGAATCT TCGAGCTGGT TACTTCTTGT 181 GGGCAATGAT TGCATATGGA TTAGGTCTTC TTATAACATA TGTAGCATTG AACTTAATGG 241 ATGGTCATGG CCAACCTGCA CTTCTTTACA TCGTCCCATT TACCCTCGGG ACCTTTTTGA 301 TGCTGGGGAG AAAGAGAGGT GACCTGAAAA TTCTTTGGAC AAAGGGTGAA CCAGAAAGGG 361 TGTGTCCACA TGTTCGTCTC GAATCAATCG AGGAATCGAA TCGAGAAGGA TAAGGATAAT 421 CTTCCTCTTG TAATTATATA ACTACATACT GACCTAAATG TTATCAATCA TTCATCATTC 481 TGGTATTATT TAGCTGTTTT AAGGCTTAGC AAAATCTTCA GTTGTTAAGT ACACACACAT 541 TTGATATGCC AGTTATTAAT GTACAGCTGA TTGATCAGCA TTTGTCACTT TGGTGAAAAA 601 TAGTGCAGTT GCTGCTCAAC TTTTATTATT GTATAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 42686 to 45300): Exon 1 43296 43428 ( 133 n); cDNA 1 133 ( 133 n); score: 1.000 Intron 1 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 43750 43820 ( 71 n); cDNA 134 204 ( 71 n); score: 1.000 Intron 2 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 43916 43999 ( 84 n); cDNA 205 288 ( 84 n); score: 1.000 Intron 3 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 4 44197 44538 ( 342 n); cDNA 289 630 ( 342 n); score: 1.000 PPA cDNA 633 648 MATCH C08SLe0084H03.1+ SGN-E397533- 1.000 630 0.972 C PGS_C08SLe0084H03.1+_SGN-E397533- (43296 43428,43750 43820,43916 43999,44197 44538) Alignment (genomic DNA sequence = upper lines): GTGATAAAAG TGGAGAAGAT GGTATTCCAA TGCTGCTGAA GATTCCACGA CTATTTGATC 43355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATAAAAG TGGAGAAGAT GGTATTCCAA TGCTGCTGAA GATTCCACGA CTATTTGATC 60 CATGGGGTGG TTACAGCATT ATCGGCTTTG GTGACATCCT ATTGCCTGGA CTGCTAGTAG 43415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGGGTGG TTACAGCATT ATCGGCTTTG GTGACATCCT ATTGCCTGGA CTGCTAGTAG 120 CATTTTCACT TAGGTCTGCA CTTCCGATTT TCACCATACA AAGCTTTGAA TTTGTTCCTC 43475 |||||||||| ||| CATTTTCACT TAG....... .......... .......... .......... .......... 133 TATATATGCA GTCTATAAGG TTTTCTTTGG GAGGGTAAGT CGAGTGGTAG AATATGGTTT 43535 .......... .......... .......... .......... .......... .......... 133 TGTATTTAGG CTTGGGACTT GACTCACAGC TAAAACAGTC TCCAGAAATG AGCTAACCTG 43595 .......... .......... .......... .......... .......... .......... 133 TTTCCCTTTC GTAATTTAGT TGTCTTTTCT GTCATGACAT AGCAAATACA CAACTTTAAT 43655 .......... .......... .......... .......... .......... .......... 133 GTTCCGATAA AAAAAAAAAC ACAGAGAGAT CTCGGACACT GATTCCAGAA TTATTGTTTA 43715 .......... .......... .......... .......... .......... .......... 133 TTTTGGGTCG TCAATGAAAT TTGTTCCTTT GCAGGTATGA TTGGCTTGCA AAGAAGAATC 43775 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTATGA TTGGCTTGCA AAGAAGAATC 159 TTCGAGCTGG TTACTTCTTG TGGGCAATGA TTGCATATGG ATTAGGTACT TAACGATATC 43835 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTCGAGCTGG TTACTTCTTG TGGGCAATGA TTGCATATGG ATTAG..... .......... 204 TTCTATAGAT TAAGCCTATT GCTTGAGTTG GAGTTTTTTC TGTTCTACAA ATTTGAATAT 43895 .......... .......... .......... .......... .......... .......... 204 ATTCTCTTGA TACATTGCAG GTCTTCTTAT AACATATGTA GCATTGAACT TAATGGATGG 43955 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTCTTCTTAT AACATATGTA GCATTGAACT TAATGGATGG 244 TCATGGCCAA CCTGCACTTC TTTACATCGT CCCATTTACC CTCGGTAATT CTCATCATAT 44015 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCATGGCCAA CCTGCACTTC TTTACATCGT CCCATTTACC CTCG...... .......... 288 ACTACTTTTT AAGTCGTAAT GTAACATTGT TTTTGGTAAC TAAACACCGT AAACGACTCT 44075 .......... .......... .......... .......... .......... .......... 288 CCTATGGAGA CCATTTTCTT GGAAAATGAC TTCTGTCTTA CCAAACACAT TTCCTAAATC 44135 .......... .......... .......... .......... .......... .......... 288 TGCATGAACA AGGAGTTCCT AGTTTCACAA TCACCGGACC GATCTATACA TCTTTGTGCA 44195 .......... .......... .......... .......... .......... .......... 288 GGGACCTTTT TGATGCTGGG GAGAAAGAGA GGTGACCTGA AAATTCTTTG GACAAAGGGT 44255 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GGACCTTTT TGATGCTGGG GAGAAAGAGA GGTGACCTGA AAATTCTTTG GACAAAGGGT 347 GAACCAGAAA GGGTGTGTCC ACATGTTCGT CTCGAATCAA TCGAGGAATC GAATCGAGAA 44315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACCAGAAA GGGTGTGTCC ACATGTTCGT CTCGAATCAA TCGAGGAATC GAATCGAGAA 407 GGATAAGGAT AATCTTCCTC TTGTAATTAT ATAACTACAT ACTGACCTAA ATGTTATCAA 44375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATAAGGAT AATCTTCCTC TTGTAATTAT ATAACTACAT ACTGACCTAA ATGTTATCAA 467 TCATTCATCA TTCTGGTATT ATTTAGCTGT TTTAAGGCTT AGCAAAATCT TCAGTTGTTA 44435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCATCA TTCTGGTATT ATTTAGCTGT TTTAAGGCTT AGCAAAATCT TCAGTTGTTA 527 AGTACACACA CATTTGATAT GCCAGTTATT AATGTACAGC TGATTGATCA GCATTTGTCA 44495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACACACA CATTTGATAT GCCAGTTATT AATGTACAGC TGATTGATCA GCATTTGTCA 587 CTTTGGTGAA AAATAGTGCA GTTGCTGCTC AACTTTTATT ATT 44538 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTTTGGTGAA AAATAGTGCA GTTGCTGCTC AACTTTTATT ATT 630 hqPGS_C08SLe0084H03.1+_SGN-E397533- (43296 43428,43750 43820,43916 43999,44197 44538) ******************************************************************************** EST sequence 33 +strand 364 n (File: SGN-E216937+) 1 TTCGGTANCT TGTGTATTCC AATGCTGCTG AAGATTCCAC GACTATTTTA TCCATGGGGT 61 GGTTACAGTA TTATCGGCTT TGGTGACATC CTATTGCCTG GACTGCTAGT AGCATTTTCA 121 CTTAGGTATG ATTGGCTTGC AAAGAAGAAT CTTCGAGCTG GTTACTTCTT GTGGGCAATG 181 ATTGCATATG GATTAGGTCT TCTTATAACA TATGTAGCAT TGAACTTAAT GGATGGTCAT 241 GGCCAACCTG CACTTCTTTA CATCGGCCCA TTTACCCTCG GGACCTTTTT GATGCTGGGG 301 AGAAAGAGAG GTGACCTGAA AATTCTTTGG ACAAAGGGCG AACCAGAAAG GGTGTGTCCA 361 CATG Predicted gene structure (within gDNA segment 42587 to 44890): Exon 1 43317 43428 ( 112 n); cDNA 14 125 ( 112 n); score: 0.982 Intron 1 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 43750 43820 ( 71 n); cDNA 126 196 ( 71 n); score: 1.000 Intron 2 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 43916 43999 ( 84 n); cDNA 197 280 ( 84 n); score: 0.988 Intron 3 44000 44196 ( 197 n); Pd: 0.999 (s: 0.98), Pa: 0.833 (s: 1.00) Exon 4 44197 44280 ( 84 n); cDNA 281 364 ( 84 n); score: 0.988 MATCH C08SLe0084H03.1+ SGN-E216937+ 0.989 351 0.964 C PGS_C08SLe0084H03.1+_SGN-E216937+ (43317 43428,43750 43820,43916 43999,44197 44280) Alignment (genomic DNA sequence = upper lines): GTATTCCAAT GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT TACAGCATTA 43376 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||| |||| GTATTCCAAT GCTGCTGAAG ATTCCACGAC TATTTTATCC ATGGGGTGGT TACAGTATTA 73 TCGGCTTTGG TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AGGTCTGCAC 43436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TCGGCTTTGG TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AG........ 125 TTCCGATTTT CACCATACAA AGCTTTGAAT TTGTTCCTCT ATATATGCAG TCTATAAGGT 43496 .......... .......... .......... .......... .......... .......... 125 TTTCTTTGGG AGGGTAAGTC GAGTGGTAGA ATATGGTTTT GTATTTAGGC TTGGGACTTG 43556 .......... .......... .......... .......... .......... .......... 125 ACTCACAGCT AAAACAGTCT CCAGAAATGA GCTAACCTGT TTCCCTTTCG TAATTTAGTT 43616 .......... .......... .......... .......... .......... .......... 125 GTCTTTTCTG TCATGACATA GCAAATACAC AACTTTAATG TTCCGATAAA AAAAAAAACA 43676 .......... .......... .......... .......... .......... .......... 125 CAGAGAGATC TCGGACACTG ATTCCAGAAT TATTGTTTAT TTTGGGTCGT CAATGAAATT 43736 .......... .......... .......... .......... .......... .......... 125 TGTTCCTTTG CAGGTATGAT TGGCTTGCAA AGAAGAATCT TCGAGCTGGT TACTTCTTGT 43796 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTATGAT TGGCTTGCAA AGAAGAATCT TCGAGCTGGT TACTTCTTGT 172 GGGCAATGAT TGCATATGGA TTAGGTACTT AACGATATCT TCTATAGATT AAGCCTATTG 43856 |||||||||| |||||||||| |||| GGGCAATGAT TGCATATGGA TTAG...... .......... .......... .......... 196 CTTGAGTTGG AGTTTTTTCT GTTCTACAAA TTTGAATATA TTCTCTTGAT ACATTGCAGG 43916 | .......... .......... .......... .......... .......... .........G 197 TCTTCTTATA ACATATGTAG CATTGAACTT AATGGATGGT CATGGCCAAC CTGCACTTCT 43976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTATA ACATATGTAG CATTGAACTT AATGGATGGT CATGGCCAAC CTGCACTTCT 257 TTACATCGTC CCATTTACCC TCGGTAATTC TCATCATATA CTACTTTTTA AGTCGTAATG 44036 |||||||| | |||||||||| ||| TTACATCGGC CCATTTACCC TCG....... .......... .......... .......... 280 TAACATTGTT TTTGGTAACT AAACACCGTA AACGACTCTC CTATGGAGAC CATTTTCTTG 44096 .......... .......... .......... .......... .......... .......... 280 GAAAATGACT TCTGTCTTAC CAAACACATT TCCTAAATCT GCATGAACAA GGAGTTCCTA 44156 .......... .......... .......... .......... .......... .......... 280 GTTTCACAAT CACCGGACCG ATCTATACAT CTTTGTGCAG GGACCTTTTT GATGCTGGGG 44216 |||||||||| |||||||||| .......... .......... .......... .......... GGACCTTTTT GATGCTGGGG 300 AGAAAGAGAG GTGACCTGAA AATTCTTTGG ACAAAGGGTG AACCAGAAAG GGTGTGTCCA 44276 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AGAAAGAGAG GTGACCTGAA AATTCTTTGG ACAAAGGGCG AACCAGAAAG GGTGTGTCCA 360 CATG 44280 |||| CATG 364 hqPGS_C08SLe0084H03.1+_SGN-E216937+ (43317 43428,43750 43820,43916 43999,44197 44280) ******************************************************************************** EST sequence 10 +strand 589 n (File: SGN-E262051+) 1 GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT TACAGCATTA TCGGCTTTGG 61 TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AGGTATGATT GGCTTGCAAA 121 GAAGAATCTT CGAGCTGGTT ACTTCTTGTG GGCAATGATT GCATATGGAT TAGGTCTTCT 181 TATAACATAT GTAGCATTGA ACTTAATGGA TGGTCATGGC CAACCTGCAC TTCTTTACAT 241 CGTCCCATTT ACCCTCGGGA CCTTTTTGAT GCTGGGGAGA AAGAGAGGTG ACCTGAAAAT 301 TCTTTGGACA AAGGGTGAAC CAGAAAGGGT GTGTCCACAT GTTCGTCTCG AATCAATCGA 361 GGAATCGAAT CGAGAAGGAT AAGGATAATC TTCCTCTTGT AATTATATAA CTACATACTG 421 ACCTAAATGT TATCAATCAT TCATCATTCT GGTATTATTT AGCTGTTTTA AGGCTTAGCA 481 AAATCTTCAG TTGTTAAGTA CACACACATT TGATATGCCA GTTATTAATG TACAGCTGAT 541 TGATCAGCAT TTGTCACTTT GGTGAAAAAA AAANANANNA AAAAAAAAA Predicted gene structure (within gDNA segment 42727 to 45318): Exon 1 43327 43428 ( 102 n); cDNA 1 102 ( 102 n); score: 1.000 Intron 1 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 43750 43820 ( 71 n); cDNA 103 173 ( 71 n); score: 1.000 Intron 2 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 43916 43999 ( 84 n); cDNA 174 257 ( 84 n); score: 1.000 Intron 3 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 4 44197 44508 ( 312 n); cDNA 258 569 ( 312 n); score: 1.000 PPA cDNA 580 589 MATCH C08SLe0084H03.1+ SGN-E262051+ 1.000 569 0.966 C PGS_C08SLe0084H03.1+_SGN-E262051+ (43327 43428,43750 43820,43916 43999,44197 44508) Alignment (genomic DNA sequence = upper lines): GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT TACAGCATTA TCGGCTTTGG 43386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT TACAGCATTA TCGGCTTTGG 60 TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AGGTCTGCAC TTCCGATTTT 43446 |||||||||| |||||||||| |||||||||| |||||||||| || TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AG........ .......... 102 CACCATACAA AGCTTTGAAT TTGTTCCTCT ATATATGCAG TCTATAAGGT TTTCTTTGGG 43506 .......... .......... .......... .......... .......... .......... 102 AGGGTAAGTC GAGTGGTAGA ATATGGTTTT GTATTTAGGC TTGGGACTTG ACTCACAGCT 43566 .......... .......... .......... .......... .......... .......... 102 AAAACAGTCT CCAGAAATGA GCTAACCTGT TTCCCTTTCG TAATTTAGTT GTCTTTTCTG 43626 .......... .......... .......... .......... .......... .......... 102 TCATGACATA GCAAATACAC AACTTTAATG TTCCGATAAA AAAAAAAACA CAGAGAGATC 43686 .......... .......... .......... .......... .......... .......... 102 TCGGACACTG ATTCCAGAAT TATTGTTTAT TTTGGGTCGT CAATGAAATT TGTTCCTTTG 43746 .......... .......... .......... .......... .......... .......... 102 CAGGTATGAT TGGCTTGCAA AGAAGAATCT TCGAGCTGGT TACTTCTTGT GGGCAATGAT 43806 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTATGAT TGGCTTGCAA AGAAGAATCT TCGAGCTGGT TACTTCTTGT GGGCAATGAT 159 TGCATATGGA TTAGGTACTT AACGATATCT TCTATAGATT AAGCCTATTG CTTGAGTTGG 43866 |||||||||| |||| TGCATATGGA TTAG...... .......... .......... .......... .......... 173 AGTTTTTTCT GTTCTACAAA TTTGAATATA TTCTCTTGAT ACATTGCAGG TCTTCTTATA 43926 | |||||||||| .......... .......... .......... .......... .........G TCTTCTTATA 184 ACATATGTAG CATTGAACTT AATGGATGGT CATGGCCAAC CTGCACTTCT TTACATCGTC 43986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATATGTAG CATTGAACTT AATGGATGGT CATGGCCAAC CTGCACTTCT TTACATCGTC 244 CCATTTACCC TCGGTAATTC TCATCATATA CTACTTTTTA AGTCGTAATG TAACATTGTT 44046 |||||||||| ||| CCATTTACCC TCG....... .......... .......... .......... .......... 257 TTTGGTAACT AAACACCGTA AACGACTCTC CTATGGAGAC CATTTTCTTG GAAAATGACT 44106 .......... .......... .......... .......... .......... .......... 257 TCTGTCTTAC CAAACACATT TCCTAAATCT GCATGAACAA GGAGTTCCTA GTTTCACAAT 44166 .......... .......... .......... .......... .......... .......... 257 CACCGGACCG ATCTATACAT CTTTGTGCAG GGACCTTTTT GATGCTGGGG AGAAAGAGAG 44226 |||||||||| |||||||||| |||||||||| .......... .......... .......... GGACCTTTTT GATGCTGGGG AGAAAGAGAG 287 GTGACCTGAA AATTCTTTGG ACAAAGGGTG AACCAGAAAG GGTGTGTCCA CATGTTCGTC 44286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCTGAA AATTCTTTGG ACAAAGGGTG AACCAGAAAG GGTGTGTCCA CATGTTCGTC 347 TCGAATCAAT CGAGGAATCG AATCGAGAAG GATAAGGATA ATCTTCCTCT TGTAATTATA 44346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAATCAAT CGAGGAATCG AATCGAGAAG GATAAGGATA ATCTTCCTCT TGTAATTATA 407 TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 44406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 467 TTAAGGCTTA GCAAAATCTT CAGTTGTTAA GTACACACAC ATTTGATATG CCAGTTATTA 44466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGGCTTA GCAAAATCTT CAGTTGTTAA GTACACACAC ATTTGATATG CCAGTTATTA 527 ATGTACAGCT GATTGATCAG CATTTGTCAC TTTGGTGAAA AA 44508 |||||||||| |||||||||| |||||||||| |||||||||| || ATGTACAGCT GATTGATCAG CATTTGTCAC TTTGGTGAAA AA 569 hqPGS_C08SLe0084H03.1+_SGN-E262051+ (43327 43428,43750 43820,43916 43999,44197 44508) ******************************************************************************** EST sequence 16 +strand 566 n (File: SGN-E263102+) 1 GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT TACAGCATTA TCGGCTTTGG 61 TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AGGTATGATT GGCTTGCAAA 121 GAAGAATCTT CGAGCTGGTT ACTTCTTGTG GGCAATGATT GCATATGGAT TAGGTCTTCT 181 TATAACATAT GTAGCATTGA ACTTAATGGA TGGTCATGGC CAACCTGCAC TTCTTTACAT 241 CGTCCCATTT ACCCTCGGGA CCTTTTTGAT GCTGGGGAGA AAGAGAGGTG ACCTGAAAAT 301 TCTTTGGACA AAGGGTGAAC CAGAAAGGGT GTGTCCACAT GTTCGTCTCG AATCAATCGA 361 GGAATCGAAT CGAGAAGGAT AAGGATAATC TTCCTCTTGT AATTATATAA CTACATACTG 421 ACCTAAATGT TATCAATCAT TCATCATTCT GGTATTATTT AGCTGTTTTA AGGCTTAGCA 481 AAATCTTCAG TTGTTAAGTA CACACACATT TGATATGCCA GTTATTAATG TACAGCTGAT 541 TGATCAGCAT TTGTCACTTT GGTGAA Predicted gene structure (within gDNA segment 42727 to 45115): Exon 1 43327 43428 ( 102 n); cDNA 1 102 ( 102 n); score: 1.000 Intron 1 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 43750 43820 ( 71 n); cDNA 103 173 ( 71 n); score: 1.000 Intron 2 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 43916 43999 ( 84 n); cDNA 174 257 ( 84 n); score: 1.000 Intron 3 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 4 44197 44505 ( 309 n); cDNA 258 566 ( 309 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E263102+ 1.000 566 1.000 C PGS_C08SLe0084H03.1+_SGN-E263102+ (43327 43428,43750 43820,43916 43999,44197 44505) Alignment (genomic DNA sequence = upper lines): GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT TACAGCATTA TCGGCTTTGG 43386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAAG ATTCCACGAC TATTTGATCC ATGGGGTGGT TACAGCATTA TCGGCTTTGG 60 TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AGGTCTGCAC TTCCGATTTT 43446 |||||||||| |||||||||| |||||||||| |||||||||| || TGACATCCTA TTGCCTGGAC TGCTAGTAGC ATTTTCACTT AG........ .......... 102 CACCATACAA AGCTTTGAAT TTGTTCCTCT ATATATGCAG TCTATAAGGT TTTCTTTGGG 43506 .......... .......... .......... .......... .......... .......... 102 AGGGTAAGTC GAGTGGTAGA ATATGGTTTT GTATTTAGGC TTGGGACTTG ACTCACAGCT 43566 .......... .......... .......... .......... .......... .......... 102 AAAACAGTCT CCAGAAATGA GCTAACCTGT TTCCCTTTCG TAATTTAGTT GTCTTTTCTG 43626 .......... .......... .......... .......... .......... .......... 102 TCATGACATA GCAAATACAC AACTTTAATG TTCCGATAAA AAAAAAAACA CAGAGAGATC 43686 .......... .......... .......... .......... .......... .......... 102 TCGGACACTG ATTCCAGAAT TATTGTTTAT TTTGGGTCGT CAATGAAATT TGTTCCTTTG 43746 .......... .......... .......... .......... .......... .......... 102 CAGGTATGAT TGGCTTGCAA AGAAGAATCT TCGAGCTGGT TACTTCTTGT GGGCAATGAT 43806 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTATGAT TGGCTTGCAA AGAAGAATCT TCGAGCTGGT TACTTCTTGT GGGCAATGAT 159 TGCATATGGA TTAGGTACTT AACGATATCT TCTATAGATT AAGCCTATTG CTTGAGTTGG 43866 |||||||||| |||| TGCATATGGA TTAG...... .......... .......... .......... .......... 173 AGTTTTTTCT GTTCTACAAA TTTGAATATA TTCTCTTGAT ACATTGCAGG TCTTCTTATA 43926 | |||||||||| .......... .......... .......... .......... .........G TCTTCTTATA 184 ACATATGTAG CATTGAACTT AATGGATGGT CATGGCCAAC CTGCACTTCT TTACATCGTC 43986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATATGTAG CATTGAACTT AATGGATGGT CATGGCCAAC CTGCACTTCT TTACATCGTC 244 CCATTTACCC TCGGTAATTC TCATCATATA CTACTTTTTA AGTCGTAATG TAACATTGTT 44046 |||||||||| ||| CCATTTACCC TCG....... .......... .......... .......... .......... 257 TTTGGTAACT AAACACCGTA AACGACTCTC CTATGGAGAC CATTTTCTTG GAAAATGACT 44106 .......... .......... .......... .......... .......... .......... 257 TCTGTCTTAC CAAACACATT TCCTAAATCT GCATGAACAA GGAGTTCCTA GTTTCACAAT 44166 .......... .......... .......... .......... .......... .......... 257 CACCGGACCG ATCTATACAT CTTTGTGCAG GGACCTTTTT GATGCTGGGG AGAAAGAGAG 44226 |||||||||| |||||||||| |||||||||| .......... .......... .......... GGACCTTTTT GATGCTGGGG AGAAAGAGAG 287 GTGACCTGAA AATTCTTTGG ACAAAGGGTG AACCAGAAAG GGTGTGTCCA CATGTTCGTC 44286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCTGAA AATTCTTTGG ACAAAGGGTG AACCAGAAAG GGTGTGTCCA CATGTTCGTC 347 TCGAATCAAT CGAGGAATCG AATCGAGAAG GATAAGGATA ATCTTCCTCT TGTAATTATA 44346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAATCAAT CGAGGAATCG AATCGAGAAG GATAAGGATA ATCTTCCTCT TGTAATTATA 407 TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 44406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 467 TTAAGGCTTA GCAAAATCTT CAGTTGTTAA GTACACACAC ATTTGATATG CCAGTTATTA 44466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGGCTTA GCAAAATCTT CAGTTGTTAA GTACACACAC ATTTGATATG CCAGTTATTA 527 ATGTACAGCT GATTGATCAG CATTTGTCAC TTTGGTGAA 44505 |||||||||| |||||||||| |||||||||| ||||||||| ATGTACAGCT GATTGATCAG CATTTGTCAC TTTGGTGAA 566 hqPGS_C08SLe0084H03.1+_SGN-E263102+ (43327 43428,43750 43820,43916 43999,44197 44505) ******************************************************************************** EST sequence 244 -strand 611 n (File: SGN-E396887-) 1 AAGATTCCAG GACTATTTTG ATCCATGGGG TGGTTACAGC ATTATCGGCT TTGGTGACAT 61 CCTATTGCCT GGACTGCTAG TAGCATTTTC ACTTAGGTAT GATTGGCTTG CAAAGAAGAA 121 TCTTCGAGCT GGTTACTTCT TGTGGGCAAT GATTGCATAT GGATTAGGTC TTCTTATAAC 181 ATATGTAGCA TTGAACTTAA TGGATGGTCA TGGCCAACCT GCACTTCTTT ACATCGTCCC 241 ATTTACCCTC GGGACCTTTT TGATGCTGGG GAGAAAGAGA GGTGACCTGA AAATTCTTTG 301 GACAAAGGGT GAACCAGAAA GGGTGTGTCC ACATGTTCGT CTCGAATCAA TCGAGGAATC 361 GAATCGAGAA GGATAAGGAT AATCTTCCTC TTGTAATTAT ATAACTACAT ACTGACCTAA 421 ATGTTATCAA TCATTCATCA TTCTGGTATT ATTTAGCTGT TTTAAGGCTT AGCAAAATCT 481 TCAGTTGTTA AGTACACACA CATTTGATAT GCCAGTTATT AATGTACAGC TGATTGATCA 541 GCATTTGTCA CTTTGGTGAA AAATAGTGCA GTTGCTGCTC AACTTTTATT ATTGTCTAAA 601 AAAAAAAAAA A Predicted gene structure (within gDNA segment 42579 to 45282): Exon 1 43334 43428 ( 95 n); cDNA 1 96 ( 96 n); score: 0.963 Intron 1 43429 43749 ( 321 n); Pd: 0.870 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 43750 43820 ( 71 n); cDNA 97 167 ( 71 n); score: 1.000 Intron 2 43821 43915 ( 95 n); Pd: 0.957 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 43916 43999 ( 84 n); cDNA 168 251 ( 84 n); score: 1.000 Intron 3 44000 44196 ( 197 n); Pd: 0.999 (s: 1.00), Pa: 0.833 (s: 1.00) Exon 4 44197 44542 ( 346 n); cDNA 252 597 ( 346 n); score: 1.000 PPA cDNA 598 611 MATCH C08SLe0084H03.1+ SGN-E396887- 0.994 596 0.975 C PGS_C08SLe0084H03.1+_SGN-E396887- (43334 43428,43750 43820,43916 43999,44197 44542) Alignment (genomic DNA sequence = upper lines): AAGATTCCAC GACTA-TTTG ATCCATGGGG TGGTTACAGC ATTATCGGCT TTGGTGACAT 43392 ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTCCAG GACTATTTTG ATCCATGGGG TGGTTACAGC ATTATCGGCT TTGGTGACAT 60 CCTATTGCCT GGACTGCTAG TAGCATTTTC ACTTAGGTCT GCACTTCCGA TTTTCACCAT 43452 |||||||||| |||||||||| |||||||||| |||||| CCTATTGCCT GGACTGCTAG TAGCATTTTC ACTTAG.... .......... .......... 96 ACAAAGCTTT GAATTTGTTC CTCTATATAT GCAGTCTATA AGGTTTTCTT TGGGAGGGTA 43512 .......... .......... .......... .......... .......... .......... 96 AGTCGAGTGG TAGAATATGG TTTTGTATTT AGGCTTGGGA CTTGACTCAC AGCTAAAACA 43572 .......... .......... .......... .......... .......... .......... 96 GTCTCCAGAA ATGAGCTAAC CTGTTTCCCT TTCGTAATTT AGTTGTCTTT TCTGTCATGA 43632 .......... .......... .......... .......... .......... .......... 96 CATAGCAAAT ACACAACTTT AATGTTCCGA TAAAAAAAAA AACACAGAGA GATCTCGGAC 43692 .......... .......... .......... .......... .......... .......... 96 ACTGATTCCA GAATTATTGT TTATTTTGGG TCGTCAATGA AATTTGTTCC TTTGCAGGTA 43752 ||| .......... .......... .......... .......... .......... .......GTA 99 TGATTGGCTT GCAAAGAAGA ATCTTCGAGC TGGTTACTTC TTGTGGGCAA TGATTGCATA 43812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTGGCTT GCAAAGAAGA ATCTTCGAGC TGGTTACTTC TTGTGGGCAA TGATTGCATA 159 TGGATTAGGT ACTTAACGAT ATCTTCTATA GATTAAGCCT ATTGCTTGAG TTGGAGTTTT 43872 |||||||| TGGATTAG.. .......... .......... .......... .......... .......... 167 TTCTGTTCTA CAAATTTGAA TATATTCTCT TGATACATTG CAGGTCTTCT TATAACATAT 43932 ||||||| |||||||||| .......... .......... .......... .......... ...GTCTTCT TATAACATAT 184 GTAGCATTGA ACTTAATGGA TGGTCATGGC CAACCTGCAC TTCTTTACAT CGTCCCATTT 43992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCATTGA ACTTAATGGA TGGTCATGGC CAACCTGCAC TTCTTTACAT CGTCCCATTT 244 ACCCTCGGTA ATTCTCATCA TATACTACTT TTTAAGTCGT AATGTAACAT TGTTTTTGGT 44052 ||||||| ACCCTCG... .......... .......... .......... .......... .......... 251 AACTAAACAC CGTAAACGAC TCTCCTATGG AGACCATTTT CTTGGAAAAT GACTTCTGTC 44112 .......... .......... .......... .......... .......... .......... 251 TTACCAAACA CATTTCCTAA ATCTGCATGA ACAAGGAGTT CCTAGTTTCA CAATCACCGG 44172 .......... .......... .......... .......... .......... .......... 251 ACCGATCTAT ACATCTTTGT GCAGGGACCT TTTTGATGCT GGGGAGAAAG AGAGGTGACC 44232 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGACCT TTTTGATGCT GGGGAGAAAG AGAGGTGACC 287 TGAAAATTCT TTGGACAAAG GGTGAACCAG AAAGGGTGTG TCCACATGTT CGTCTCGAAT 44292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAATTCT TTGGACAAAG GGTGAACCAG AAAGGGTGTG TCCACATGTT CGTCTCGAAT 347 CAATCGAGGA ATCGAATCGA GAAGGATAAG GATAATCTTC CTCTTGTAAT TATATAACTA 44352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCGAGGA ATCGAATCGA GAAGGATAAG GATAATCTTC CTCTTGTAAT TATATAACTA 407 CATACTGACC TAAATGTTAT CAATCATTCA TCATTCTGGT ATTATTTAGC TGTTTTAAGG 44412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACTGACC TAAATGTTAT CAATCATTCA TCATTCTGGT ATTATTTAGC TGTTTTAAGG 467 CTTAGCAAAA TCTTCAGTTG TTAAGTACAC ACACATTTGA TATGCCAGTT ATTAATGTAC 44472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGCAAAA TCTTCAGTTG TTAAGTACAC ACACATTTGA TATGCCAGTT ATTAATGTAC 527 AGCTGATTGA TCAGCATTTG TCACTTTGGT GAAAAATAGT GCAGTTGCTG CTCAACTTTT 44532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGATTGA TCAGCATTTG TCACTTTGGT GAAAAATAGT GCAGTTGCTG CTCAACTTTT 587 ATTATTGTCT 44542 |||||||||| ATTATTGTCT 597 hqPGS_C08SLe0084H03.1+_SGN-E396887- (43334 43428,43750 43820,43916 43999,44197 44542) ******************************************************************************** EST sequence 177 -strand 383 n (File: SGN-E216636-) 1 TCCCATTTAC CCTCGGGACC TTTTTGATGC TGGGGAGAAA GAGAGGTGAC CTGAAAATTC 61 TTTGGACAAA GGGTGAACCA GAAAGGGTGT GTCCACATGT TCGTCTCGAA TCAATCGAGG 121 AATCGAATCC AGAAGGATAA GGATAATCTT CCTCTTGTAA TTATATAACT ACATACTGAC 181 CTAAATGTTA TCAATCATTC ATCATTCTGG TATTATTTAG CTGTTTTAAG GCTTAGCAAA 241 ATCTTCAGTT GTTAAGTACA CACACATTTG ATATGCCAGT TATTAATGTA CAGCTGATTG 301 ATCAGCATTT GTCACTTTGG TGAAAAAAAG TGCAGCTGCT GCTCAACTTT TATTATTGTC 361 TTAAAAAAAA AAAGGAAAAA AAA Predicted gene structure (within gDNA segment 43446 to 45362): Exon 1 43985 43999 ( 15 n); cDNA 1 15 ( 15 n); score: 1.000 Intron 1 44000 44196 ( 197 n); Pd: 0.999 (s: 0), Pa: 0.833 (s: 1.00) Exon 2 44197 44542 ( 346 n); cDNA 16 361 ( 346 n); score: 0.991 PPA cDNA 363 374 MATCH C08SLe0084H03.1+ SGN-E216636- 0.991 361 0.943 C PGS_C08SLe0084H03.1+_SGN-E216636- (43985 43999,44197 44542) Alignment (genomic DNA sequence = upper lines): TCCCATTTAC CCTCGGTAAT TCTCATCATA TACTACTTTT TAAGTCGTAA TGTAACATTG 44044 |||||||||| ||||| TCCCATTTAC CCTCG..... .......... .......... .......... .......... 15 TTTTTGGTAA CTAAACACCG TAAACGACTC TCCTATGGAG ACCATTTTCT TGGAAAATGA 44104 .......... .......... .......... .......... .......... .......... 15 CTTCTGTCTT ACCAAACACA TTTCCTAAAT CTGCATGAAC AAGGAGTTCC TAGTTTCACA 44164 .......... .......... .......... .......... .......... .......... 15 ATCACCGGAC CGATCTATAC ATCTTTGTGC AGGGACCTTT TTGATGCTGG GGAGAAAGAG 44224 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GGACCTTT TTGATGCTGG GGAGAAAGAG 43 AGGTGACCTG AAAATTCTTT GGACAAAGGG TGAACCAGAA AGGGTGTGTC CACATGTTCG 44284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGACCTG AAAATTCTTT GGACAAAGGG TGAACCAGAA AGGGTGTGTC CACATGTTCG 103 TCTCGAATCA ATCGAGGAAT CGAATCGAGA AGGATAAGGA TAATCTTCCT CTTGTAATTA 44344 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TCTCGAATCA ATCGAGGAAT CGAATCCAGA AGGATAAGGA TAATCTTCCT CTTGTAATTA 163 TATAACTACA TACTGACCTA AATGTTATCA ATCATTCATC ATTCTGGTAT TATTTAGCTG 44404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAACTACA TACTGACCTA AATGTTATCA ATCATTCATC ATTCTGGTAT TATTTAGCTG 223 TTTTAAGGCT TAGCAAAATC TTCAGTTGTT AAGTACACAC ACATTTGATA TGCCAGTTAT 44464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAAGGCT TAGCAAAATC TTCAGTTGTT AAGTACACAC ACATTTGATA TGCCAGTTAT 283 TAATGTACAG CTGATTGATC AGCATTTGTC ACTTTGGTGA AAAATAGTGC AGTTGCTGCT 44524 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| || ||||||| TAATGTACAG CTGATTGATC AGCATTTGTC ACTTTGGTGA AAAAAAGTGC AGCTGCTGCT 343 CAACTTTTAT TATTGTCT 44542 |||||||||| |||||||| CAACTTTTAT TATTGTCT 361 hqPGS_C08SLe0084H03.1+_SGN-E216636- (43985 43999,44197 44542) ******************************************************************************** EST sequence 65 +strand 191 n (File: SGN-E254745+) 1 TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 61 TTAAGAGCTT ACCAAAATCT TCAATTGTTA AGTACACACA CATTTGATAT GCCAGTTATT 121 AATGTACAGC TGATTGATCA GCATTTGTCA CTTTGGTGAA AAAAAAAAAA AAATAAATAC 181 AAAAAAAAAA A Predicted gene structure (within gDNA segment 43747 to 45398): Exon 1 44347 44508 ( 162 n); cDNA 1 163 ( 163 n); score: 0.972 PPA cDNA 164 177 MATCH C08SLe0084H03.1+ SGN-E254745+ 0.972 162 0.848 C PGS_C08SLe0084H03.1+_SGN-E254745+ (44347 44508) Alignment (genomic DNA sequence = upper lines): TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 44406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTACATA CTGACCTAAA TGTTATCAAT CATTCATCAT TCTGGTATTA TTTAGCTGTT 60 TTAAG-GCTT AGCAAAATCT TCAGTTGTTA AGTACACACA CATTTGATAT GCCAGTTATT 44465 ||||| |||| | |||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TTAAGAGCTT ACCAAAATCT TCAATTGTTA AGTACACACA CATTTGATAT GCCAGTTATT 120 AATGTACAGC TGATTGATCA GCATTTGTCA CTTTGGTGAA AAA 44508 |||||||||| |||||||||| |||||||||| |||||||||| ||| AATGTACAGC TGATTGATCA GCATTTGTCA CTTTGGTGAA AAA 163 hqPGS_C08SLe0084H03.1+_SGN-E254745+ (44347 44508) ******************************************************************************** EST sequence 46 +strand 554 n (File: SGN-E295861+) 1 TTGCACTGAC CACTCAGCAC AAAGAAAGCA AAAAAAAAAA AAGAAGAAGA AAAAAGCTTC 61 AATCTTTGTG AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG 121 TTTAGGGAAA CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA 181 CCACCAGCTC CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT 241 ATTGCAGAGT TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT 301 CTTAAGAGAT CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT 361 GGTGGTATGA TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGAGG ACACATCAAC 421 CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA AGGAAATTGT CCTTGACCAG GGCTGTTTTC 481 TACATGGTGA TGCAGTGCCT TGGTGCAATC TGTGGTGCTG GTGTTGTGAA GGGCTTCATG 541 GTAGGACCAT ACCA Predicted gene structure (within gDNA segment 48410 to 51042): Exon 1 49010 49416 ( 407 n); cDNA 1 406 ( 406 n); score: 0.998 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50432 ( 148 n); cDNA 407 554 ( 148 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E295861+ 0.998 555 1.002 C PGS_C08SLe0084H03.1+_SGN-E295861+ (49010 49416,50285 50432) Alignment (genomic DNA sequence = upper lines): TTGCACTGAC CACTCAGCAC AAAGAAAGCA AAAAAAAAAA AAAGAAGAAG AAAAAAGCTT 49069 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TTGCACTGAC CACTCAGCAC AAAGAAAGCA AAAA-AAAAA AAAGAAGAAG AAAAAAGCTT 59 CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG GAGCTAACAA 49129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG GAGCTAACAA 119 GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT ACAAAGAGCC 49189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT ACAAAGAGCC 179 ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG 49249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG 239 TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG 49309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG 299 TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT 49369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT 359 TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGTT GGTTTCATTG 49429 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAG... .......... 406 CCCCCCTTTT CATTCTTGAT GCTAAAGATT GTAACTTTAC TTGTTTTACT TAAAGAGTGA 49489 .......... .......... .......... .......... .......... .......... 406 GTTTGTGTTC ATTTATTGTC TACTGATTGC TTTTGTCAAC TGGTTTTGTG GATTGCTGAG 49549 .......... .......... .......... .......... .......... .......... 406 TATGTAGAAG GTAAAGATTT GTTTTATTTT TACTGGTTTA GAGGTTTGAA ACATGTTAAC 49609 .......... .......... .......... .......... .......... .......... 406 TGGTTTGTTT TATGTTTCTT GATTTCTTTG AGTTGATTCC CTTCTTTTGC TTAAGATAGT 49669 .......... .......... .......... .......... .......... .......... 406 TGAGCTTGTG TTCACTTATT GTGTATATTT GTCGACTAAT TTAATGGATT CTTGATCTTG 49729 .......... .......... .......... .......... .......... .......... 406 AGTATAGTCA ATTAAAGATT CATTTTTCAC TGTTTTTAAA GGTCCAAAAC ATGTTACTGG 49789 .......... .......... .......... .......... .......... .......... 406 TTTGATTTCT GTGTCTGAGG TACAAAAATG GAGTTTGGTG AAGCTTATTC CTTTACCTCT 49849 .......... .......... .......... .......... .......... .......... 406 ATACTGTAAA AATATGACTT CTCTTTATTT TCCTTCGTTC ACTAATTTTG TATCTCATAC 49909 .......... .......... .......... .......... .......... .......... 406 TTTTTACAAC TAATTTGATG GATCCTTGAA GATTCAACCT TTCTTTGTCT TGGAGGTTCA 49969 .......... .......... .......... .......... .......... .......... 406 AAACATGTAA ATGGTTTATT TTCTGAATCT TGTTACTTTA CCCTTTTTAT ATAGCAAGTG 50029 .......... .......... .......... .......... .......... .......... 406 TAACACTTTG TGGCTTATTT CTTTGTTTGC TTGCTTTTGA TCACCATATT TGAGCTTTTA 50089 .......... .......... .......... .......... .......... .......... 406 GTTACTTTAT TTGTACCATC ATACCTTTTT CAACTAATTA ATGGGATCTT GAGTATAATT 50149 .......... .......... .......... .......... .......... .......... 406 CACATAAGGG TATAGTTTTT TCCTGTTTTG AAGTTCAAAG CATGTTACAT ATTTTGTAAA 50209 .......... .......... .......... .......... .......... .......... 406 ATGAGTCTTT TCCTTCTTTG AATAAGGGTT GGCTTGTTTC TCTGATGCTA AATTCTGTGT 50269 .......... .......... .......... .......... .......... .......... 406 TTTGATATCA AACAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA 50329 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA 451 GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT 50389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT 511 GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCA 50432 |||||||||| |||||||||| |||||||||| |||||||||| ||| GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCA 554 hqPGS_C08SLe0084H03.1+_SGN-E295861+ (49010 49416,50285 50432) ******************************************************************************** EST sequence 127 +strand 726 n (File: SGN-E549255+) 1 GCACTGACCA CTCAGCACAA AGAAAGCAAA AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA 61 TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG CTAACAAGTT 121 TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA AAGAGCCACC 181 ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT 241 TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT 301 TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG 361 TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGAGGAC ACATCAACCC 421 AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC TTGACCAGGG CTGTTTTCTA 481 CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT 541 ANGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT AACCCTGGAT ACACCAAGGG 601 TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT GTTTACACTG GTTTTTCAGC 661 CACTGATGCC AAGAGAAATG CCAGAGACTC ACATGTTCCT ATTTTGGCAC CACTTCCTAT 721 TGGATT Predicted gene structure (within gDNA segment 48412 to 51450): Exon 1 49012 49416 ( 405 n); cDNA 1 404 ( 404 n); score: 0.998 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 405 700 ( 296 n); score: 0.993 MATCH C08SLe0084H03.1+ SGN-E549255+ 0.996 701 0.966 C PGS_C08SLe0084H03.1+_SGN-E549255+ (49012 49416,50285 50580) Alignment (genomic DNA sequence = upper lines): GCACTGACCA CTCAGCACAA AGAAAGCAAA AAAAAAAAAA AGAAGAAGAA AAAAGCTTCA 49071 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GCACTGACCA CTCAGCACAA AGAAAGCAAA AAAA-AAAAA AGAAGAAGAA AAAAGCTTCA 59 ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA GCTAACAAGT 49131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA GCTAACAAGT 119 TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC AAAGAGCCAC 49191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC AAAGAGCCAC 179 CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC AGGGCTGGTA 49251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC AGGGCTGGTA 239 TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT GTTATGGGTC 49311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT GTTATGGGTC 299 TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGGTTGCT TGGGCTTTTG 49371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGGTTGCT TGGGCTTTTG 359 GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT CTCAGGTTGG TTTCATTGCC 49431 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT CTCAG..... .......... 404 CCCCTTTTCA TTCTTGATGC TAAAGATTGT AACTTTACTT GTTTTACTTA AAGAGTGAGT 49491 .......... .......... .......... .......... .......... .......... 404 TTGTGTTCAT TTATTGTCTA CTGATTGCTT TTGTCAACTG GTTTTGTGGA TTGCTGAGTA 49551 .......... .......... .......... .......... .......... .......... 404 TGTAGAAGGT AAAGATTTGT TTTATTTTTA CTGGTTTAGA GGTTTGAAAC ATGTTAACTG 49611 .......... .......... .......... .......... .......... .......... 404 GTTTGTTTTA TGTTTCTTGA TTTCTTTGAG TTGATTCCCT TCTTTTGCTT AAGATAGTTG 49671 .......... .......... .......... .......... .......... .......... 404 AGCTTGTGTT CACTTATTGT GTATATTTGT CGACTAATTT AATGGATTCT TGATCTTGAG 49731 .......... .......... .......... .......... .......... .......... 404 TATAGTCAAT TAAAGATTCA TTTTTCACTG TTTTTAAAGG TCCAAAACAT GTTACTGGTT 49791 .......... .......... .......... .......... .......... .......... 404 TGATTTCTGT GTCTGAGGTA CAAAAATGGA GTTTGGTGAA GCTTATTCCT TTACCTCTAT 49851 .......... .......... .......... .......... .......... .......... 404 ACTGTAAAAA TATGACTTCT CTTTATTTTC CTTCGTTCAC TAATTTTGTA TCTCATACTT 49911 .......... .......... .......... .......... .......... .......... 404 TTTACAACTA ATTTGATGGA TCCTTGAAGA TTCAACCTTT CTTTGTCTTG GAGGTTCAAA 49971 .......... .......... .......... .......... .......... .......... 404 ACATGTAAAT GGTTTATTTT CTGAATCTTG TTACTTTACC CTTTTTATAT AGCAAGTGTA 50031 .......... .......... .......... .......... .......... .......... 404 ACACTTTGTG GCTTATTTCT TTGTTTGCTT GCTTTTGATC ACCATATTTG AGCTTTTAGT 50091 .......... .......... .......... .......... .......... .......... 404 TACTTTATTT GTACCATCAT ACCTTTTTCA ACTAATTAAT GGGATCTTGA GTATAATTCA 50151 .......... .......... .......... .......... .......... .......... 404 CATAAGGGTA TAGTTTTTTC CTGTTTTGAA GTTCAAAGCA TGTTACATAT TTTGTAAAAT 50211 .......... .......... .......... .......... .......... .......... 404 GAGTCTTTTC CTTCTTTGAA TAAGGGTTGG CTTGTTTCTC TGATGCTAAA TTCTGTGTTT 50271 .......... .......... .......... .......... .......... .......... 404 TGATATCAAA CAGGAGGACA CATCAACCCA GCTGTGACCT TTGGTCTTTT CTTGGCAAGG 50331 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GAGGACA CATCAACCCA GCTGTGACCT TTGGTCTTTT CTTGGCAAGG 451 AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC AGTGCCTTGG TGCAATCTGT 50391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC AGTGCCTTGG TGCAATCTGT 511 GGTGCTGGTG TTGTGAAGGG CTTCATGGTA GGACCATACC AAAGACTTGG TGGTGGTGCT 50451 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GGTGCTGGTG TTGTGAAGGG CTTCATGGTA NGACCATACC AAAGACTTGG TGGTGGTGCT 571 AATGTTGTTA ACCCTGGATA CACCAAGGGT GATGGCCTTG GTGCTGAAAT TATTGGCACC 50511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTGTTA ACCCTGGATA CACCAAGGGT GATGGCCTTG GTGCTGAAAT TATTGGCACC 631 TTTGTCCTTG TTTACACTGT TTTTTCAGCC ACTGATGCCA AGAGAAATGC CAGAGACTCA 50571 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTCCTTG TTTACACTGG TTTTTCAGCC ACTGATGCCA AGAGAAATGC CAGAGACTCA 691 CATGTTCCT 50580 ||||||||| CATGTTCCT 700 hqPGS_C08SLe0084H03.1+_SGN-E549255+ (49012 49416,50285 50580) ******************************************************************************** EST sequence 30 +strand 600 n (File: SGN-E346107+) 1 CACTGACCAC TCAGCACAAA GAAAGCAAAA AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT 61 CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT 121 AGTGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA 181 CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 241 GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 301 AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 361 GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGAGGACA CATCAACCCA 421 GCTGTGACCT TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC 481 ATGGTGATGC AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA 541 GGACCATACC AAAGACTTGG TGGTGGTGCT AATGTTGTTA ACCCTGGATC ACCAAGGGTG Predicted gene structure (within gDNA segment 48413 to 51190): Exon 1 49013 49416 ( 404 n); cDNA 1 403 ( 403 n); score: 0.995 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50482 ( 198 n); cDNA 404 600 ( 197 n); score: 0.995 MATCH C08SLe0084H03.1+ SGN-E346107+ 0.995 602 1.003 C PGS_C08SLe0084H03.1+_SGN-E346107+ (49013 49416,50285 50482) Alignment (genomic DNA sequence = upper lines): CACTGACCAC TCAGCACAAA GAAAGCAAAA AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA 49072 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CACTGACCAC TCAGCACAAA GAAAGCAAAA AAAA-AAAAA GAAGAAGAAA AAAGCTTCAA 59 TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG CTAACAAGTT 49132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG CTAACAAGTT 119 TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA AAGAGCCACC 49192 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA AAGAGCCACC 179 ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT 49252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT 239 TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT 49312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT 299 TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG 49372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG 359 TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGTTGGT TTCATTGCCC 49432 |||||||||| |||||||||| |||||||||| |||||||||| |||| TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAG...... .......... 403 CCCTTTTCAT TCTTGATGCT AAAGATTGTA ACTTTACTTG TTTTACTTAA AGAGTGAGTT 49492 .......... .......... .......... .......... .......... .......... 403 TGTGTTCATT TATTGTCTAC TGATTGCTTT TGTCAACTGG TTTTGTGGAT TGCTGAGTAT 49552 .......... .......... .......... .......... .......... .......... 403 GTAGAAGGTA AAGATTTGTT TTATTTTTAC TGGTTTAGAG GTTTGAAACA TGTTAACTGG 49612 .......... .......... .......... .......... .......... .......... 403 TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT TGATTCCCTT CTTTTGCTTA AGATAGTTGA 49672 .......... .......... .......... .......... .......... .......... 403 GCTTGTGTTC ACTTATTGTG TATATTTGTC GACTAATTTA ATGGATTCTT GATCTTGAGT 49732 .......... .......... .......... .......... .......... .......... 403 ATAGTCAATT AAAGATTCAT TTTTCACTGT TTTTAAAGGT CCAAAACATG TTACTGGTTT 49792 .......... .......... .......... .......... .......... .......... 403 GATTTCTGTG TCTGAGGTAC AAAAATGGAG TTTGGTGAAG CTTATTCCTT TACCTCTATA 49852 .......... .......... .......... .......... .......... .......... 403 CTGTAAAAAT ATGACTTCTC TTTATTTTCC TTCGTTCACT AATTTTGTAT CTCATACTTT 49912 .......... .......... .......... .......... .......... .......... 403 TTACAACTAA TTTGATGGAT CCTTGAAGAT TCAACCTTTC TTTGTCTTGG AGGTTCAAAA 49972 .......... .......... .......... .......... .......... .......... 403 CATGTAAATG GTTTATTTTC TGAATCTTGT TACTTTACCC TTTTTATATA GCAAGTGTAA 50032 .......... .......... .......... .......... .......... .......... 403 CACTTTGTGG CTTATTTCTT TGTTTGCTTG CTTTTGATCA CCATATTTGA GCTTTTAGTT 50092 .......... .......... .......... .......... .......... .......... 403 ACTTTATTTG TACCATCATA CCTTTTTCAA CTAATTAATG GGATCTTGAG TATAATTCAC 50152 .......... .......... .......... .......... .......... .......... 403 ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT GTTACATATT TTGTAAAATG 50212 .......... .......... .......... .......... .......... .......... 403 AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT GATGCTAAAT TCTGTGTTTT 50272 .......... .......... .......... .......... .......... .......... 403 GATATCAAAC AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 50332 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 451 AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 50392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 511 GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA AAGACTTGGT GGTGGTGCTA 50452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA AAGACTTGGT GGTGGTGCTA 571 ATGTTGTTAA CCCTGGATAC ACCAAGGGTG 50482 |||||||||| |||||||| | |||||||||| ATGTTGTTAA CCCTGGAT-C ACCAAGGGTG 600 hqPGS_C08SLe0084H03.1+_SGN-E346107+ (49013 49416,50285 50482) ******************************************************************************** EST sequence 114 +strand 526 n (File: SGN-E311403+) 1 CACTGACCAC TCAGCACAAA GAAAGCAAAA AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT 61 CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT 121 AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA 181 CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 241 GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 301 AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 361 GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGAGGACA CATCAACCCA 421 GCTGTGACCT TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC 481 ATGGTGATGC AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGTGA Predicted gene structure (within gDNA segment 48413 to 51017): Exon 1 49013 49416 ( 404 n); cDNA 1 403 ( 403 n); score: 0.998 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50407 ( 123 n); cDNA 404 526 ( 123 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E311403+ 0.998 527 1.002 C PGS_C08SLe0084H03.1+_SGN-E311403+ (49013 49416,50285 50407) Alignment (genomic DNA sequence = upper lines): CACTGACCAC TCAGCACAAA GAAAGCAAAA AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA 49072 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CACTGACCAC TCAGCACAAA GAAAGCAAAA AAAA-AAAAA GAAGAAGAAA AAAGCTTCAA 59 TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG CTAACAAGTT 49132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG CTAACAAGTT 119 TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA AAGAGCCACC 49192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA AAGAGCCACC 179 ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT 49252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT 239 TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT 49312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT 299 TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG 49372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG 359 TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGTTGGT TTCATTGCCC 49432 |||||||||| |||||||||| |||||||||| |||||||||| |||| TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAG...... .......... 403 CCCTTTTCAT TCTTGATGCT AAAGATTGTA ACTTTACTTG TTTTACTTAA AGAGTGAGTT 49492 .......... .......... .......... .......... .......... .......... 403 TGTGTTCATT TATTGTCTAC TGATTGCTTT TGTCAACTGG TTTTGTGGAT TGCTGAGTAT 49552 .......... .......... .......... .......... .......... .......... 403 GTAGAAGGTA AAGATTTGTT TTATTTTTAC TGGTTTAGAG GTTTGAAACA TGTTAACTGG 49612 .......... .......... .......... .......... .......... .......... 403 TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT TGATTCCCTT CTTTTGCTTA AGATAGTTGA 49672 .......... .......... .......... .......... .......... .......... 403 GCTTGTGTTC ACTTATTGTG TATATTTGTC GACTAATTTA ATGGATTCTT GATCTTGAGT 49732 .......... .......... .......... .......... .......... .......... 403 ATAGTCAATT AAAGATTCAT TTTTCACTGT TTTTAAAGGT CCAAAACATG TTACTGGTTT 49792 .......... .......... .......... .......... .......... .......... 403 GATTTCTGTG TCTGAGGTAC AAAAATGGAG TTTGGTGAAG CTTATTCCTT TACCTCTATA 49852 .......... .......... .......... .......... .......... .......... 403 CTGTAAAAAT ATGACTTCTC TTTATTTTCC TTCGTTCACT AATTTTGTAT CTCATACTTT 49912 .......... .......... .......... .......... .......... .......... 403 TTACAACTAA TTTGATGGAT CCTTGAAGAT TCAACCTTTC TTTGTCTTGG AGGTTCAAAA 49972 .......... .......... .......... .......... .......... .......... 403 CATGTAAATG GTTTATTTTC TGAATCTTGT TACTTTACCC TTTTTATATA GCAAGTGTAA 50032 .......... .......... .......... .......... .......... .......... 403 CACTTTGTGG CTTATTTCTT TGTTTGCTTG CTTTTGATCA CCATATTTGA GCTTTTAGTT 50092 .......... .......... .......... .......... .......... .......... 403 ACTTTATTTG TACCATCATA CCTTTTTCAA CTAATTAATG GGATCTTGAG TATAATTCAC 50152 .......... .......... .......... .......... .......... .......... 403 ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT GTTACATATT TTGTAAAATG 50212 .......... .......... .......... .......... .......... .......... 403 AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT GATGCTAAAT TCTGTGTTTT 50272 .......... .......... .......... .......... .......... .......... 403 GATATCAAAC AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 50332 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 451 AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 50392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 511 GTGCTGGTGT TGTGA 50407 |||||||||| ||||| GTGCTGGTGT TGTGA 526 hqPGS_C08SLe0084H03.1+_SGN-E311403+ (49013 49416,50285 50407) ******************************************************************************** EST sequence 118 +strand 519 n (File: SGN-E247831+) 1 ACTGACCACT CAGCACAAAG AAAGCAAAAA AAAAAAAAGA GGAAGAAAAA AGCTTCAATC 61 TTTGTGAAAA AATGGCAGAA AACAAGGAAG AAGATGTTAA GCTTGGAGCT AACAAGTTTA 121 GGGAAACTCA ACCATTAGGT ACAGCAGCTC AAACAGACAA AGATTACAAA GAGCCACCAC 181 CAGCTCCATT GTTTGAACCA GGGGAGTTGT CATCATGGTC CTTTTACAGG GCTGGTATTG 241 CAGAGTTCAT GGCAACTTTC TTGTTCTTGT ATATCACAAT CTTGACTGTT ATGGGTCTTA 301 AGAGATCTGA TAGTTTATGT TCTTCAGTGG GTATTCAAGG GGTTGCTTGG GCTTTTGGTG 361 GTATGATCTT TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGAGGACAC ATCAACCCAG 421 CTGTGACCTT TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA 481 TGGTGATGCA GTGCCTTGGT GCAATCTGTG GTGCTGGTG Predicted gene structure (within gDNA segment 48414 to 51011): Exon 1 49014 49416 ( 403 n); cDNA 1 402 ( 402 n); score: 0.995 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50401 ( 117 n); cDNA 403 519 ( 117 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E247831+ 0.996 520 1.002 C PGS_C08SLe0084H03.1+_SGN-E247831+ (49014 49416,50285 50401) Alignment (genomic DNA sequence = upper lines): ACTGACCACT CAGCACAAAG AAAGCAAAAA AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT 49073 |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| |||||||||| ACTGACCACT CAGCACAAAG AAAGCAAAAA AAAA-AAAAG AGGAAGAAAA AAGCTTCAAT 59 CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT 49133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT 119 AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA 49193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA 179 CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 49253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 239 GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 49313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 299 AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 49373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 359 GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGTTGGTT TCATTGCCCC 49433 |||||||||| |||||||||| |||||||||| |||||||||| ||| GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAG....... .......... 402 CCTTTTCATT CTTGATGCTA AAGATTGTAA CTTTACTTGT TTTACTTAAA GAGTGAGTTT 49493 .......... .......... .......... .......... .......... .......... 402 GTGTTCATTT ATTGTCTACT GATTGCTTTT GTCAACTGGT TTTGTGGATT GCTGAGTATG 49553 .......... .......... .......... .......... .......... .......... 402 TAGAAGGTAA AGATTTGTTT TATTTTTACT GGTTTAGAGG TTTGAAACAT GTTAACTGGT 49613 .......... .......... .......... .......... .......... .......... 402 TTGTTTTATG TTTCTTGATT TCTTTGAGTT GATTCCCTTC TTTTGCTTAA GATAGTTGAG 49673 .......... .......... .......... .......... .......... .......... 402 CTTGTGTTCA CTTATTGTGT ATATTTGTCG ACTAATTTAA TGGATTCTTG ATCTTGAGTA 49733 .......... .......... .......... .......... .......... .......... 402 TAGTCAATTA AAGATTCATT TTTCACTGTT TTTAAAGGTC CAAAACATGT TACTGGTTTG 49793 .......... .......... .......... .......... .......... .......... 402 ATTTCTGTGT CTGAGGTACA AAAATGGAGT TTGGTGAAGC TTATTCCTTT ACCTCTATAC 49853 .......... .......... .......... .......... .......... .......... 402 TGTAAAAATA TGACTTCTCT TTATTTTCCT TCGTTCACTA ATTTTGTATC TCATACTTTT 49913 .......... .......... .......... .......... .......... .......... 402 TACAACTAAT TTGATGGATC CTTGAAGATT CAACCTTTCT TTGTCTTGGA GGTTCAAAAC 49973 .......... .......... .......... .......... .......... .......... 402 ATGTAAATGG TTTATTTTCT GAATCTTGTT ACTTTACCCT TTTTATATAG CAAGTGTAAC 50033 .......... .......... .......... .......... .......... .......... 402 ACTTTGTGGC TTATTTCTTT GTTTGCTTGC TTTTGATCAC CATATTTGAG CTTTTAGTTA 50093 .......... .......... .......... .......... .......... .......... 402 CTTTATTTGT ACCATCATAC CTTTTTCAAC TAATTAATGG GATCTTGAGT ATAATTCACA 50153 .......... .......... .......... .......... .......... .......... 402 TAAGGGTATA GTTTTTTCCT GTTTTGAAGT TCAAAGCATG TTACATATTT TGTAAAATGA 50213 .......... .......... .......... .......... .......... .......... 402 GTCTTTTCCT TCTTTGAATA AGGGTTGGCT TGTTTCTCTG ATGCTAAATT CTGTGTTTTG 50273 .......... .......... .......... .......... .......... .......... 402 ATATCAAACA GGAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGCAAGGAA 50333 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGCAAGGAA 451 ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG CAATCTGTGG 50393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG CAATCTGTGG 511 TGCTGGTG 50401 |||||||| TGCTGGTG 519 hqPGS_C08SLe0084H03.1+_SGN-E247831+ (49014 49416,50285 50401) ******************************************************************************** EST sequence 67 +strand 446 n (File: SGN-E296612+) 1 ACTGACCACT CAGCACAAAG AAAGCAAAAA AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT 61 CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT 121 AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA 181 CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 241 GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 301 AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 361 GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGAGGACA CATCAACCCA 421 GCTGTGACCT TTGGTCTTTT CTTGGC Predicted gene structure (within gDNA segment 48414 to 50937): Exon 1 49014 49416 ( 403 n); cDNA 1 403 ( 403 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50327 ( 43 n); cDNA 404 446 ( 43 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E296612+ 1.000 446 1.000 C PGS_C08SLe0084H03.1+_SGN-E296612+ (49014 49416,50285 50327) Alignment (genomic DNA sequence = upper lines): ACTGACCACT CAGCACAAAG AAAGCAAAAA AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT 49073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGACCACT CAGCACAAAG AAAGCAAAAA AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT 60 CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT 49133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT 120 AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA 49193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA 180 CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 49253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 240 GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 49313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 300 AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 49373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 360 GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGTTGGTT TCATTGCCCC 49433 |||||||||| |||||||||| |||||||||| |||||||||| ||| GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAG....... .......... 403 CCTTTTCATT CTTGATGCTA AAGATTGTAA CTTTACTTGT TTTACTTAAA GAGTGAGTTT 49493 .......... .......... .......... .......... .......... .......... 403 GTGTTCATTT ATTGTCTACT GATTGCTTTT GTCAACTGGT TTTGTGGATT GCTGAGTATG 49553 .......... .......... .......... .......... .......... .......... 403 TAGAAGGTAA AGATTTGTTT TATTTTTACT GGTTTAGAGG TTTGAAACAT GTTAACTGGT 49613 .......... .......... .......... .......... .......... .......... 403 TTGTTTTATG TTTCTTGATT TCTTTGAGTT GATTCCCTTC TTTTGCTTAA GATAGTTGAG 49673 .......... .......... .......... .......... .......... .......... 403 CTTGTGTTCA CTTATTGTGT ATATTTGTCG ACTAATTTAA TGGATTCTTG ATCTTGAGTA 49733 .......... .......... .......... .......... .......... .......... 403 TAGTCAATTA AAGATTCATT TTTCACTGTT TTTAAAGGTC CAAAACATGT TACTGGTTTG 49793 .......... .......... .......... .......... .......... .......... 403 ATTTCTGTGT CTGAGGTACA AAAATGGAGT TTGGTGAAGC TTATTCCTTT ACCTCTATAC 49853 .......... .......... .......... .......... .......... .......... 403 TGTAAAAATA TGACTTCTCT TTATTTTCCT TCGTTCACTA ATTTTGTATC TCATACTTTT 49913 .......... .......... .......... .......... .......... .......... 403 TACAACTAAT TTGATGGATC CTTGAAGATT CAACCTTTCT TTGTCTTGGA GGTTCAAAAC 49973 .......... .......... .......... .......... .......... .......... 403 ATGTAAATGG TTTATTTTCT GAATCTTGTT ACTTTACCCT TTTTATATAG CAAGTGTAAC 50033 .......... .......... .......... .......... .......... .......... 403 ACTTTGTGGC TTATTTCTTT GTTTGCTTGC TTTTGATCAC CATATTTGAG CTTTTAGTTA 50093 .......... .......... .......... .......... .......... .......... 403 CTTTATTTGT ACCATCATAC CTTTTTCAAC TAATTAATGG GATCTTGAGT ATAATTCACA 50153 .......... .......... .......... .......... .......... .......... 403 TAAGGGTATA GTTTTTTCCT GTTTTGAAGT TCAAAGCATG TTACATATTT TGTAAAATGA 50213 .......... .......... .......... .......... .......... .......... 403 GTCTTTTCCT TCTTTGAATA AGGGTTGGCT TGTTTCTCTG ATGCTAAATT CTGTGTTTTG 50273 .......... .......... .......... .......... .......... .......... 403 ATATCAAACA GGAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGC 50327 ||||||||| |||||||||| |||||||||| |||||||||| |||| .......... .GAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGC 446 hqPGS_C08SLe0084H03.1+_SGN-E296612+ (49014 49416,50285 50327) ******************************************************************************** EST sequence 130 +strand 550 n (File: SGN-E249059+) 1 CTGACCACTC AGCACAAAGA AAGCAAAAAA AAAAAAAGAA GAAGAAAAAA GCTTCAATCT 61 TTGTGAAAAA ATGGCAGAAA ACAAGGAAGA AGATGTTAAG CTTGGAGCTA ACCAAGTTTA 121 GGGAAACTCA ACCATTAGGT ACAGCAGCTC AAACAGACAA AGATTACCAA AGAGCCACCA 181 CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT 241 GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT 301 AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT 361 GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGAGGACA CATCAACCCA 421 GCTGTGACCT TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC 481 ATGGTGATGC AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA 541 GGACCATACC Predicted gene structure (within gDNA segment 48415 to 51041): Exon 1 49015 49416 ( 402 n); cDNA 1 403 ( 403 n); score: 0.985 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50431 ( 147 n); cDNA 404 550 ( 147 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E249059+ 0.989 549 0.998 C PGS_C08SLe0084H03.1+_SGN-E249059+ (49015 49416,50285 50431) Alignment (genomic DNA sequence = upper lines): CTGACCACTC AGCACAAAGA AAGCAAAAAA AAAAAAAAGA AGAAGAAAAA AGCTTCAATC 49074 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CTGACCACTC AGCACAAAGA AAGCAAAAAA AAAA-AAAGA AGAAGAAAAA AGCTTCAATC 59 TTTGTGAAAA AATGGCAGAA AACAAGGAAG AAGATGTTAA GCTTGGAGCT AA-CAAGTTT 49133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TTTGTGAAAA AATGGCAGAA AACAAGGAAG AAGATGTTAA GCTTGGAGCT AACCAAGTTT 119 AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTA-CA AAGAGCCACC 49192 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACCA AAGAGCCACC 179 ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT 49252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT 239 TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT 49312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT 299 TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG 49372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG 359 TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGTTGGT TTCATTGCCC 49432 |||||||||| |||||||||| |||||||||| |||||||||| |||| TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAG...... .......... 403 CCCTTTTCAT TCTTGATGCT AAAGATTGTA ACTTTACTTG TTTTACTTAA AGAGTGAGTT 49492 .......... .......... .......... .......... .......... .......... 403 TGTGTTCATT TATTGTCTAC TGATTGCTTT TGTCAACTGG TTTTGTGGAT TGCTGAGTAT 49552 .......... .......... .......... .......... .......... .......... 403 GTAGAAGGTA AAGATTTGTT TTATTTTTAC TGGTTTAGAG GTTTGAAACA TGTTAACTGG 49612 .......... .......... .......... .......... .......... .......... 403 TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT TGATTCCCTT CTTTTGCTTA AGATAGTTGA 49672 .......... .......... .......... .......... .......... .......... 403 GCTTGTGTTC ACTTATTGTG TATATTTGTC GACTAATTTA ATGGATTCTT GATCTTGAGT 49732 .......... .......... .......... .......... .......... .......... 403 ATAGTCAATT AAAGATTCAT TTTTCACTGT TTTTAAAGGT CCAAAACATG TTACTGGTTT 49792 .......... .......... .......... .......... .......... .......... 403 GATTTCTGTG TCTGAGGTAC AAAAATGGAG TTTGGTGAAG CTTATTCCTT TACCTCTATA 49852 .......... .......... .......... .......... .......... .......... 403 CTGTAAAAAT ATGACTTCTC TTTATTTTCC TTCGTTCACT AATTTTGTAT CTCATACTTT 49912 .......... .......... .......... .......... .......... .......... 403 TTACAACTAA TTTGATGGAT CCTTGAAGAT TCAACCTTTC TTTGTCTTGG AGGTTCAAAA 49972 .......... .......... .......... .......... .......... .......... 403 CATGTAAATG GTTTATTTTC TGAATCTTGT TACTTTACCC TTTTTATATA GCAAGTGTAA 50032 .......... .......... .......... .......... .......... .......... 403 CACTTTGTGG CTTATTTCTT TGTTTGCTTG CTTTTGATCA CCATATTTGA GCTTTTAGTT 50092 .......... .......... .......... .......... .......... .......... 403 ACTTTATTTG TACCATCATA CCTTTTTCAA CTAATTAATG GGATCTTGAG TATAATTCAC 50152 .......... .......... .......... .......... .......... .......... 403 ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT GTTACATATT TTGTAAAATG 50212 .......... .......... .......... .......... .......... .......... 403 AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT GATGCTAAAT TCTGTGTTTT 50272 .......... .......... .......... .......... .......... .......... 403 GATATCAAAC AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 50332 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 451 AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 50392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 511 GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACC 50431 |||||||||| |||||||||| |||||||||| ||||||||| GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACC 550 hqPGS_C08SLe0084H03.1+_SGN-E249059+ (49015 49416,50285 50431) ******************************************************************************** EST sequence 63 +strand 640 n (File: SGN-E297881+) 1 GACCACTCAG CACAAAGAAA GCAAAAAAAA AAAAAAGAAG AAGAAAAAAG CTTCAATCTT 61 TGTGAAAAAA TGGCAGAAAA CAAGGAAGAA GATGTTAAGC TTGGAGCTAA CAAGTTTAGG 121 GAAACTCAAC CATTAGGTAC AGCAGCTCAA ACAGACAAAG ATTACAAAGA GCCACCACCA 181 GCTCCATTGT TTGAACCAGG GGAGTTGTCA TCATGGTCCT TTTACAGGGC TGGTATTGCA 241 GAGTTCATGG CAACTTTCTT GTTCTTGTAT ATCACAATCT TGACTGTTAT GGGTCTTAAG 301 AGATCTGATA GTTTATGTTC TTCAGTGGGT ATTCAAGGGG TTGCTTGGGC TTTTGGTGGT 361 ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG GAGGACACAT CAACCCAGCT 421 GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG 481 GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA 541 CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT 601 GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT Predicted gene structure (within gDNA segment 48417 to 51134): Exon 1 49017 49416 ( 400 n); cDNA 1 400 ( 400 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50524 ( 240 n); cDNA 401 640 ( 240 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E297881+ 1.000 640 1.000 C PGS_C08SLe0084H03.1+_SGN-E297881+ (49017 49416,50285 50524) Alignment (genomic DNA sequence = upper lines): GACCACTCAG CACAAAGAAA GCAAAAAAAA AAAAAAGAAG AAGAAAAAAG CTTCAATCTT 49076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCACTCAG CACAAAGAAA GCAAAAAAAA AAAAAAGAAG AAGAAAAAAG CTTCAATCTT 60 TGTGAAAAAA TGGCAGAAAA CAAGGAAGAA GATGTTAAGC TTGGAGCTAA CAAGTTTAGG 49136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAAAAAA TGGCAGAAAA CAAGGAAGAA GATGTTAAGC TTGGAGCTAA CAAGTTTAGG 120 GAAACTCAAC CATTAGGTAC AGCAGCTCAA ACAGACAAAG ATTACAAAGA GCCACCACCA 49196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACTCAAC CATTAGGTAC AGCAGCTCAA ACAGACAAAG ATTACAAAGA GCCACCACCA 180 GCTCCATTGT TTGAACCAGG GGAGTTGTCA TCATGGTCCT TTTACAGGGC TGGTATTGCA 49256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCATTGT TTGAACCAGG GGAGTTGTCA TCATGGTCCT TTTACAGGGC TGGTATTGCA 240 GAGTTCATGG CAACTTTCTT GTTCTTGTAT ATCACAATCT TGACTGTTAT GGGTCTTAAG 49316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTCATGG CAACTTTCTT GTTCTTGTAT ATCACAATCT TGACTGTTAT GGGTCTTAAG 300 AGATCTGATA GTTTATGTTC TTCAGTGGGT ATTCAAGGGG TTGCTTGGGC TTTTGGTGGT 49376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCTGATA GTTTATGTTC TTCAGTGGGT ATTCAAGGGG TTGCTTGGGC TTTTGGTGGT 360 ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG GTTGGTTTCA TTGCCCCCCT 49436 |||||||||| |||||||||| |||||||||| |||||||||| ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG .......... .......... 400 TTTCATTCTT GATGCTAAAG ATTGTAACTT TACTTGTTTT ACTTAAAGAG TGAGTTTGTG 49496 .......... .......... .......... .......... .......... .......... 400 TTCATTTATT GTCTACTGAT TGCTTTTGTC AACTGGTTTT GTGGATTGCT GAGTATGTAG 49556 .......... .......... .......... .......... .......... .......... 400 AAGGTAAAGA TTTGTTTTAT TTTTACTGGT TTAGAGGTTT GAAACATGTT AACTGGTTTG 49616 .......... .......... .......... .......... .......... .......... 400 TTTTATGTTT CTTGATTTCT TTGAGTTGAT TCCCTTCTTT TGCTTAAGAT AGTTGAGCTT 49676 .......... .......... .......... .......... .......... .......... 400 GTGTTCACTT ATTGTGTATA TTTGTCGACT AATTTAATGG ATTCTTGATC TTGAGTATAG 49736 .......... .......... .......... .......... .......... .......... 400 TCAATTAAAG ATTCATTTTT CACTGTTTTT AAAGGTCCAA AACATGTTAC TGGTTTGATT 49796 .......... .......... .......... .......... .......... .......... 400 TCTGTGTCTG AGGTACAAAA ATGGAGTTTG GTGAAGCTTA TTCCTTTACC TCTATACTGT 49856 .......... .......... .......... .......... .......... .......... 400 AAAAATATGA CTTCTCTTTA TTTTCCTTCG TTCACTAATT TTGTATCTCA TACTTTTTAC 49916 .......... .......... .......... .......... .......... .......... 400 AACTAATTTG ATGGATCCTT GAAGATTCAA CCTTTCTTTG TCTTGGAGGT TCAAAACATG 49976 .......... .......... .......... .......... .......... .......... 400 TAAATGGTTT ATTTTCTGAA TCTTGTTACT TTACCCTTTT TATATAGCAA GTGTAACACT 50036 .......... .......... .......... .......... .......... .......... 400 TTGTGGCTTA TTTCTTTGTT TGCTTGCTTT TGATCACCAT ATTTGAGCTT TTAGTTACTT 50096 .......... .......... .......... .......... .......... .......... 400 TATTTGTACC ATCATACCTT TTTCAACTAA TTAATGGGAT CTTGAGTATA ATTCACATAA 50156 .......... .......... .......... .......... .......... .......... 400 GGGTATAGTT TTTTCCTGTT TTGAAGTTCA AAGCATGTTA CATATTTTGT AAAATGAGTC 50216 .......... .......... .......... .......... .......... .......... 400 TTTTCCTTCT TTGAATAAGG GTTGGCTTGT TTCTCTGATG CTAAATTCTG TGTTTTGATA 50276 .......... .......... .......... .......... .......... .......... 400 TCAAACAGGA GGACACATCA ACCCAGCTGT GACCTTTGGT CTTTTCTTGG CAAGGAAATT 50336 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA GGACACATCA ACCCAGCTGT GACCTTTGGT CTTTTCTTGG CAAGGAAATT 452 GTCCTTGACC AGGGCTGTTT TCTACATGGT GATGCAGTGC CTTGGTGCAA TCTGTGGTGC 50396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTTGACC AGGGCTGTTT TCTACATGGT GATGCAGTGC CTTGGTGCAA TCTGTGGTGC 512 TGGTGTTGTG AAGGGCTTCA TGGTAGGACC ATACCAAAGA CTTGGTGGTG GTGCTAATGT 50456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTGTG AAGGGCTTCA TGGTAGGACC ATACCAAAGA CTTGGTGGTG GTGCTAATGT 572 TGTTAACCCT GGATACACCA AGGGTGATGG CCTTGGTGCT GAAATTATTG GCACCTTTGT 50516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAACCCT GGATACACCA AGGGTGATGG CCTTGGTGCT GAAATTATTG GCACCTTTGT 632 CCTTGTTT 50524 |||||||| CCTTGTTT 640 hqPGS_C08SLe0084H03.1+_SGN-E297881+ (49017 49416,50285 50524) ******************************************************************************** EST sequence 47 +strand 757 n (File: SGN-E339005+) 1 ACCACTCAGC ACAAAGAAAG CAAAAAAAAA AAAAGAAGAA GAAAAAAGCT TCAATCTTTG 61 TGAAAAAATG GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA AGTTTAGGGA 121 AACTCAACCA TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC CACCACCAGC 181 TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA 241 GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG 301 ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT 361 GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAGGA GGACACATCA ACCCAGCTGT 421 GACCTTTGGT CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT 481 GATGCAGTGC CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA TGGTAGGACC 541 ATACCAAAGA CTTGGTNGGT GGTGCCTAAT GTTGTTAACC CTGGATACAC CAAGGTGATG 601 GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 661 ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCTATTTT GGCACCACTT NCTATTGGAT 721 TCGCAGTGTT TCTTGGTTCA TTTGGCCACC ATCCCCA Predicted gene structure (within gDNA segment 48418 to 52281): Exon 1 49018 49416 ( 399 n); cDNA 1 398 ( 398 n); score: 0.997 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 399 695 ( 297 n); score: 0.980 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 0.93) Exon 3 51611 51671 ( 61 n); cDNA 696 757 ( 62 n); score: 0.943 MATCH C08SLe0084H03.1+ SGN-E339005+ 0.986 756 0.999 C PGS_C08SLe0084H03.1+_SGN-E339005+ (49018 49416,50285 50580,51611 51671) Alignment (genomic DNA sequence = upper lines): ACCACTCAGC ACAAAGAAAG CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT 49077 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ACCACTCAGC ACAAAGAAAG CAAAAAAAAA AAAA-GAAGA AGAAAAAAGC TTCAATCTTT 59 GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG 49137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG 119 AAACTCAACC ATTAGGTACA GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG 49197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTCAACC ATTAGGTACA GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG 179 CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG 49257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG 239 AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA 49317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA 299 GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA 49377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA 359 TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT 49437 |||||||||| |||||||||| |||||||||| ||||||||| TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAG. .......... .......... 398 TTCATTCTTG ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT 49497 .......... .......... .......... .......... .......... .......... 398 TCATTTATTG TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA 49557 .......... .......... .......... .......... .......... .......... 398 AGGTAAAGAT TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT 49617 .......... .......... .......... .......... .......... .......... 398 TTTATGTTTC TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG 49677 .......... .......... .......... .......... .......... .......... 398 TGTTCACTTA TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT 49737 .......... .......... .......... .......... .......... .......... 398 CAATTAAAGA TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT 49797 .......... .......... .......... .......... .......... .......... 398 CTGTGTCTGA GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA 49857 .......... .......... .......... .......... .......... .......... 398 AAAATATGAC TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA 49917 .......... .......... .......... .......... .......... .......... 398 ACTAATTTGA TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT 49977 .......... .......... .......... .......... .......... .......... 398 AAATGGTTTA TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT 50037 .......... .......... .......... .......... .......... .......... 398 TGTGGCTTAT TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT 50097 .......... .......... .......... .......... .......... .......... 398 ATTTGTACCA TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG 50157 .......... .......... .......... .......... .......... .......... 398 GGTATAGTTT TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT 50217 .......... .......... .......... .......... .......... .......... 398 TTTCCTTCTT TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT 50277 .......... .......... .......... .......... .......... .......... 398 CAAACAGGAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG 50337 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG 451 TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT 50397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT 511 GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGT-GGTG GTG-CTAATG 50455 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ||| |||||| GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTNGGTG GTGCCTAATG 571 TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG 50515 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TTGTTAACCC TGGATACACC AA-GGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG 630 TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAGA GACTCACATG 50575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAGA GACTCACATG 690 TTCCTGTAAG TGTTTTCCTC TTGTAGTTTT ATTTCTTCTT TGTGATATCA AGTTTGCTTA 50635 ||||| TTCCT..... .......... .......... .......... .......... .......... 695 TCATGGATAT TTACATGTTA ATTCTAAGCT AGAGTCTAAC CAGAAATTTT GGAAGTAGTT 50695 .......... .......... .......... .......... .......... .......... 695 TCTGAAAATT TATCAATGAT ATATGTGACT TTACATTACA TAGTTTGACG ATAAGTGAAG 50755 .......... .......... .......... .......... .......... .......... 695 CGTGACAAGT AAAAATGATC GTAGGGCCAA CTTGTTACCC TACATTGTCT GATGAGAAGT 50815 .......... .......... .......... .......... .......... .......... 695 GAAAAGTGAC AAGTAAAAAT GACCGTAGGG CCAACTTGTT ACCATACATA GTTTGACGAG 50875 .......... .......... .......... .......... .......... .......... 695 AAGTGAAAAG TGATTTTATG ACAAGTAAAA GTGAACGGAG GGTATTAAAC AACCAACTTG 50935 .......... .......... .......... .......... .......... .......... 695 CTATAACATG TTAAATTACT CTAGTAGGGT AAAAGTTCAT TGTACTGTTT AATGTATGTA 50995 .......... .......... .......... .......... .......... .......... 695 AAAAGTTGAA ATCTTGCAAG ACAAGTGGGT CTTACTTTTT GGTAAGTTAG GCAAAAATAT 51055 .......... .......... .......... .......... .......... .......... 695 TGTTCATGCT ATAGCATGTG GCATGTCTGG TTTTGTCAGC AAGTCCTTTT AGTTGGTGTA 51115 .......... .......... .......... .......... .......... .......... 695 GGGTTATGTT GTGGGCCTAA TTGAGTTAGG CTAAAGATAG TGATGTTCAT GTGATAAGTT 51175 .......... .......... .......... .......... .......... .......... 695 ATTGTAACTG TGGACTTTTT CTTGTCATGG AGTGGCTCGC CACGTCACAG TGTTGTGGAC 51235 .......... .......... .......... .......... .......... .......... 695 CTTTAGGTCA TCTCCGATCC ATAACACCAA CTTTTATACT AAAAACGTGT ATCAAATGCG 51295 .......... .......... .......... .......... .......... .......... 695 CTACACTGAT TGTTCGACAT AATATTATAT AAAGAATGAT TTGGTATATT AGGGAGTTTT 51355 .......... .......... .......... .......... .......... .......... 695 CAAAAACGTA GAATTTATAC GTTGAGTTAA GTTTCTTTGT ATTTTGTGGA GTGGAGATGT 51415 .......... .......... .......... .......... .......... .......... 695 AAATGACACC AAATTTCATA TTATTGTAGT GTCCGGATAA TGGTGTGATA CTATTCATCA 51475 .......... .......... .......... .......... .......... .......... 695 ACGCCTATTT TATATAGAAT GATCACATAA GAACATTGTT GGCCAGTCTT AGCTCACCAC 51535 .......... .......... .......... .......... .......... .......... 695 AACTATCTTT TTGCGCTTAT GTCTAAGAGA AATCCTTGGA AGACATTTGT CTGATAATCT 51595 .......... .......... .......... .......... .......... .......... 695 TTATGTTTAT TGTAGATTTT GGCACCACTT CCTATTGGAT TCGCAGTG-T TCTTGGTTCA 51654 ||||| |||||||||| ||||||||| |||||||| | |||||||||| .......... .....ATTTT GGCACCACTT NCTATTGGAT TCGCAGTGTT TCTTGGTTCA 740 TTTGGCCACC ATCCCCA 51671 |||||||||| ||||||| TTTGGCCACC ATCCCCA 757 hqPGS_C08SLe0084H03.1+_SGN-E339005+ (49018 49416,50285 50580,51611 51671) ******************************************************************************** EST sequence 116 +strand 435 n (File: SGN-E310528+) 1 CCACTCAGCA CAAAGAAAGC AAAAAAAAAA AAAGAAGAAG AAAAAAGCTT CAATCTTTGT 61 GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG GAGCTAACAA GTTTAGGGAA 121 ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT ACAAAGAGCC ACCACCAGCT 181 CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG 241 TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA 301 TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG 361 ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAAGAG GACACATCAA CCCAGCTGTG 421 ACCTTTGGTC TTTTC Predicted gene structure (within gDNA segment 48419 to 50932): Exon 1 49019 49416 ( 398 n); cDNA 1 397 ( 397 n); score: 0.995 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0) Exon 2 50285 50322 ( 38 n); cDNA 398 435 ( 38 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E310528+ 0.995 436 1.002 C PGS_C08SLe0084H03.1+_SGN-E310528+ (49019 49416,50285 50322) Alignment (genomic DNA sequence = upper lines): CCACTCAGCA CAAAGAAAGC AAAAAAAAAA AAAAGAAGAA GAAAAAAGCT TCAATCTTTG 49078 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CCACTCAGCA CAAAGAAAGC -AAAAAAAAA AAAAGAAGAA GAAAAAAGCT TCAATCTTTG 59 TGAAAAAATG GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA AGTTTAGGGA 49138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAATG GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA AGTTTAGGGA 119 AACTCAACCA TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC CACCACCAGC 49198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCAACCA TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC CACCACCAGC 179 TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA 49258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA 239 GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG 49318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG 299 ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT 49378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT 359 GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAGGT TGGTTTCATT GCCCCCCTTT 49438 |||||||||| |||||||||| |||||||||| ||||||| GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAA.. .......... .......... 397 TCATTCTTGA TGCTAAAGAT TGTAACTTTA CTTGTTTTAC TTAAAGAGTG AGTTTGTGTT 49498 .......... .......... .......... .......... .......... .......... 397 CATTTATTGT CTACTGATTG CTTTTGTCAA CTGGTTTTGT GGATTGCTGA GTATGTAGAA 49558 .......... .......... .......... .......... .......... .......... 397 GGTAAAGATT TGTTTTATTT TTACTGGTTT AGAGGTTTGA AACATGTTAA CTGGTTTGTT 49618 .......... .......... .......... .......... .......... .......... 397 TTATGTTTCT TGATTTCTTT GAGTTGATTC CCTTCTTTTG CTTAAGATAG TTGAGCTTGT 49678 .......... .......... .......... .......... .......... .......... 397 GTTCACTTAT TGTGTATATT TGTCGACTAA TTTAATGGAT TCTTGATCTT GAGTATAGTC 49738 .......... .......... .......... .......... .......... .......... 397 AATTAAAGAT TCATTTTTCA CTGTTTTTAA AGGTCCAAAA CATGTTACTG GTTTGATTTC 49798 .......... .......... .......... .......... .......... .......... 397 TGTGTCTGAG GTACAAAAAT GGAGTTTGGT GAAGCTTATT CCTTTACCTC TATACTGTAA 49858 .......... .......... .......... .......... .......... .......... 397 AAATATGACT TCTCTTTATT TTCCTTCGTT CACTAATTTT GTATCTCATA CTTTTTACAA 49918 .......... .......... .......... .......... .......... .......... 397 CTAATTTGAT GGATCCTTGA AGATTCAACC TTTCTTTGTC TTGGAGGTTC AAAACATGTA 49978 .......... .......... .......... .......... .......... .......... 397 AATGGTTTAT TTTCTGAATC TTGTTACTTT ACCCTTTTTA TATAGCAAGT GTAACACTTT 50038 .......... .......... .......... .......... .......... .......... 397 GTGGCTTATT TCTTTGTTTG CTTGCTTTTG ATCACCATAT TTGAGCTTTT AGTTACTTTA 50098 .......... .......... .......... .......... .......... .......... 397 TTTGTACCAT CATACCTTTT TCAACTAATT AATGGGATCT TGAGTATAAT TCACATAAGG 50158 .......... .......... .......... .......... .......... .......... 397 GTATAGTTTT TTCCTGTTTT GAAGTTCAAA GCATGTTACA TATTTTGTAA AATGAGTCTT 50218 .......... .......... .......... .......... .......... .......... 397 TTCCTTCTTT GAATAAGGGT TGGCTTGTTT CTCTGATGCT AAATTCTGTG TTTTGATATC 50278 .......... .......... .......... .......... .......... .......... 397 AAACAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTC 50322 |||| |||||||||| |||||||||| |||||||||| |||| ......GAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTC 435 hqPGS_C08SLe0084H03.1+_SGN-E310528+ (49019 49416,50285 50322) ******************************************************************************** EST sequence 35 +strand 514 n (File: SGN-E302665+) 1 CACTCAGTAC AACGAAAGCA AAAATAAACA AAGACGAGGA AGAAAGCTTC AATCTTTGTG 61 AAAAAATGGC ACAAAACAGG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 121 CTCAACCATT AGGTACAGGA GCTAAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 181 CATTGTTTGA ACCAGGGGAG TTGGCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 241 TCATGGCAAC TTTCTTGAAC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 301 CTGATCGTTT ATGTTCTTCA CAGGGTATTC AAGGGGTTGT TTGGGCTAAT GGTGGTATGA 361 TCTTAGATTT GGTCTACTGT ACTGCTGGTA TCTCAGGAGG ACACATGAAC CCAGCTGTGA 421 CCTTTGGTCT TTTCTTGGCA AGGAAATTGT CCTTGACCAG GGCTGTTCAC TACATGGCGA 481 TGCACTGCCT TGGTGCAAAC TGTGGTGCTG GTGT Predicted gene structure (within gDNA segment 48043 to 51435): Exon 1 49020 49416 ( 397 n); cDNA 1 396 ( 396 n); score: 0.942 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.92), Pa: 0.992 (s: 0.98) Exon 2 50285 50402 ( 118 n); cDNA 397 514 ( 118 n); score: 0.949 MATCH C08SLe0084H03.1+ SGN-E302665+ 0.944 515 1.002 C PGS_C08SLe0084H03.1+_SGN-E302665+ (49020 49416,50285 50402) Alignment (genomic DNA sequence = upper lines): CACTCAGCAC AAAGAAAGCA AAAAAAAAAA AAAGAAGAAG AAAAAAGCTT CAATCTTTGT 49079 ||||||| || || ||||||| ||| | ||| ||||| || | || ||||||| |||||||||| CACTCAGTAC AACGAAAGCA AAA-ATAAAC AAAGACGAGG AAGAAAGCTT CAATCTTTGT 59 GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG GAGCTAACAA GTTTAGGGAA 49139 |||||||||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAATGG CACAAAACAG GGAAGAAGAT GTTAAGCTTG GAGCTAACAA GTTTAGGGAA 119 ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT ACAAAGAGCC ACCACCAGCT 49199 |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ACTCAACCAT TAGGTACAGG AGCTAAAACA GACAAAGATT ACAAAGAGCC ACCACCAGCT 179 CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG 49259 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| CCATTGTTTG AACCAGGGGA GTTGGCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG 239 TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA 49319 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGCAA CTTTCTTGAA CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA 299 TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG 49379 |||||| ||| |||||||||| | ||||||| |||||||||| ||||||| |||||||||| TCTGATCGTT TATGTTCTTC ACAGGGTATT CAAGGGGTTG TTTGGGCTAA TGGTGGTATG 359 ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGTT GGTTTCATTG CCCCCCTTTT 49439 ||||| | || |||||||||| |||||||||| ||||||| ATCTTAGATT TGGTCTACTG TACTGCTGGT ATCTCAG... .......... .......... 396 CATTCTTGAT GCTAAAGATT GTAACTTTAC TTGTTTTACT TAAAGAGTGA GTTTGTGTTC 49499 .......... .......... .......... .......... .......... .......... 396 ATTTATTGTC TACTGATTGC TTTTGTCAAC TGGTTTTGTG GATTGCTGAG TATGTAGAAG 49559 .......... .......... .......... .......... .......... .......... 396 GTAAAGATTT GTTTTATTTT TACTGGTTTA GAGGTTTGAA ACATGTTAAC TGGTTTGTTT 49619 .......... .......... .......... .......... .......... .......... 396 TATGTTTCTT GATTTCTTTG AGTTGATTCC CTTCTTTTGC TTAAGATAGT TGAGCTTGTG 49679 .......... .......... .......... .......... .......... .......... 396 TTCACTTATT GTGTATATTT GTCGACTAAT TTAATGGATT CTTGATCTTG AGTATAGTCA 49739 .......... .......... .......... .......... .......... .......... 396 ATTAAAGATT CATTTTTCAC TGTTTTTAAA GGTCCAAAAC ATGTTACTGG TTTGATTTCT 49799 .......... .......... .......... .......... .......... .......... 396 GTGTCTGAGG TACAAAAATG GAGTTTGGTG AAGCTTATTC CTTTACCTCT ATACTGTAAA 49859 .......... .......... .......... .......... .......... .......... 396 AATATGACTT CTCTTTATTT TCCTTCGTTC ACTAATTTTG TATCTCATAC TTTTTACAAC 49919 .......... .......... .......... .......... .......... .......... 396 TAATTTGATG GATCCTTGAA GATTCAACCT TTCTTTGTCT TGGAGGTTCA AAACATGTAA 49979 .......... .......... .......... .......... .......... .......... 396 ATGGTTTATT TTCTGAATCT TGTTACTTTA CCCTTTTTAT ATAGCAAGTG TAACACTTTG 50039 .......... .......... .......... .......... .......... .......... 396 TGGCTTATTT CTTTGTTTGC TTGCTTTTGA TCACCATATT TGAGCTTTTA GTTACTTTAT 50099 .......... .......... .......... .......... .......... .......... 396 TTGTACCATC ATACCTTTTT CAACTAATTA ATGGGATCTT GAGTATAATT CACATAAGGG 50159 .......... .......... .......... .......... .......... .......... 396 TATAGTTTTT TCCTGTTTTG AAGTTCAAAG CATGTTACAT ATTTTGTAAA ATGAGTCTTT 50219 .......... .......... .......... .......... .......... .......... 396 TCCTTCTTTG AATAAGGGTT GGCTTGTTTC TCTGATGCTA AATTCTGTGT TTTGATATCA 50279 .......... .......... .......... .......... .......... .......... 396 AACAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC 50339 ||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| .....GAGGA CACATGAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC 451 CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG 50399 |||||||||| |||||| || |||||| ||| ||| |||||| ||||||| || |||||||||| CTTGACCAGG GCTGTTCACT ACATGGCGAT GCACTGCCTT GGTGCAAACT GTGGTGCTGG 511 TGT 50402 ||| TGT 514 hqPGS_C08SLe0084H03.1+_SGN-E302665+ (49020 49416,50285 50402) ******************************************************************************** EST sequence 31 +strand 554 n (File: SGN-E278756+) 1 TCAGCACAAA GAAAGCAAAA AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT CTTTGTGAAA 61 AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC TAACAAGTTT AGGGAAACTC 121 AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA AGAGCCACCA CCAGCTCCAT 181 TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG GGCTGGTATT GCAGAGTTCA 241 TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT TATGGGTCTT AAGAGATCTG 301 ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT GGTATGATCT 361 TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGAGGACA CATCAACCCA GCTGTGACCT 421 TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC 481 AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA NGACCATACC 541 AAAGACTTGG TGGT Predicted gene structure (within gDNA segment 48423 to 51055): Exon 1 49023 49416 ( 394 n); cDNA 1 393 ( 393 n); score: 0.997 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50445 ( 161 n); cDNA 394 554 ( 161 n); score: 0.994 MATCH C08SLe0084H03.1+ SGN-E278756+ 0.996 555 1.002 C PGS_C08SLe0084H03.1+_SGN-E278756+ (49023 49416,50285 50445) Alignment (genomic DNA sequence = upper lines): TCAGCACAAA GAAAGCAAAA AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA TCTTTGTGAA 49082 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TCAGCACAAA GAAAGCA-AA AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA TCTTTGTGAA 59 AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG CTAACAAGTT TAGGGAAACT 49142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG CTAACAAGTT TAGGGAAACT 119 CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA AAGAGCCACC ACCAGCTCCA 49202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA AAGAGCCACC ACCAGCTCCA 179 TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGTTC 49262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGTTC 239 ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT TAAGAGATCT 49322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG TTATGGGTCT TAAGAGATCT 299 GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG TGGTATGATC 49382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT GGGCTTTTGG TGGTATGATC 359 TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGTTGGT TTCATTGCCC CCCTTTTCAT 49442 |||||||||| |||||||||| |||||||||| |||| TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAG...... .......... .......... 393 TCTTGATGCT AAAGATTGTA ACTTTACTTG TTTTACTTAA AGAGTGAGTT TGTGTTCATT 49502 .......... .......... .......... .......... .......... .......... 393 TATTGTCTAC TGATTGCTTT TGTCAACTGG TTTTGTGGAT TGCTGAGTAT GTAGAAGGTA 49562 .......... .......... .......... .......... .......... .......... 393 AAGATTTGTT TTATTTTTAC TGGTTTAGAG GTTTGAAACA TGTTAACTGG TTTGTTTTAT 49622 .......... .......... .......... .......... .......... .......... 393 GTTTCTTGAT TTCTTTGAGT TGATTCCCTT CTTTTGCTTA AGATAGTTGA GCTTGTGTTC 49682 .......... .......... .......... .......... .......... .......... 393 ACTTATTGTG TATATTTGTC GACTAATTTA ATGGATTCTT GATCTTGAGT ATAGTCAATT 49742 .......... .......... .......... .......... .......... .......... 393 AAAGATTCAT TTTTCACTGT TTTTAAAGGT CCAAAACATG TTACTGGTTT GATTTCTGTG 49802 .......... .......... .......... .......... .......... .......... 393 TCTGAGGTAC AAAAATGGAG TTTGGTGAAG CTTATTCCTT TACCTCTATA CTGTAAAAAT 49862 .......... .......... .......... .......... .......... .......... 393 ATGACTTCTC TTTATTTTCC TTCGTTCACT AATTTTGTAT CTCATACTTT TTACAACTAA 49922 .......... .......... .......... .......... .......... .......... 393 TTTGATGGAT CCTTGAAGAT TCAACCTTTC TTTGTCTTGG AGGTTCAAAA CATGTAAATG 49982 .......... .......... .......... .......... .......... .......... 393 GTTTATTTTC TGAATCTTGT TACTTTACCC TTTTTATATA GCAAGTGTAA CACTTTGTGG 50042 .......... .......... .......... .......... .......... .......... 393 CTTATTTCTT TGTTTGCTTG CTTTTGATCA CCATATTTGA GCTTTTAGTT ACTTTATTTG 50102 .......... .......... .......... .......... .......... .......... 393 TACCATCATA CCTTTTTCAA CTAATTAATG GGATCTTGAG TATAATTCAC ATAAGGGTAT 50162 .......... .......... .......... .......... .......... .......... 393 AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT GTTACATATT TTGTAAAATG AGTCTTTTCC 50222 .......... .......... .......... .......... .......... .......... 393 TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT GATGCTAAAT TCTGTGTTTT GATATCAAAC 50282 .......... .......... .......... .......... .......... .......... 393 AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA AATTGTCCTT 50342 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA AATTGTCCTT 451 GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG GTGCTGGTGT 50402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG GTGCTGGTGT 511 TGTGAAGGGC TTCATGGTAG GACCATACCA AAGACTTGGT GGT 50445 |||||||||| ||||||||| |||||||||| |||||||||| ||| TGTGAAGGGC TTCATGGTAN GACCATACCA AAGACTTGGT GGT 554 hqPGS_C08SLe0084H03.1+_SGN-E278756+ (49023 49416,50285 50445) ******************************************************************************** EST sequence 142 +strand 495 n (File: SGN-E302460+) 1 ACAAAGAAAG CAAAAAAAAA AAAAGAAGAA GAAAAAAGCT TCAATCTTTG TGAAAAAATG 61 GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA AGTTTAGGGA AACTCAACCA 121 TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC CACCACCAGC TCCATTGTTT 181 GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA GTTCATGGCA 241 ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG ATCTGATAGT 301 TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT GATCTTTGCT 361 TTGGTCTACT GTACTGCTGG TATCTCAGGA GGACACATCA ACCCAGCTGT GACCTTTGGT 421 CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT GATGCAGTGC 481 CTTGGTGCAA TCTGT Predicted gene structure (within gDNA segment 48428 to 51001): Exon 1 49028 49416 ( 389 n); cDNA 1 388 ( 388 n); score: 0.997 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50391 ( 107 n); cDNA 389 495 ( 107 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E302460+ 0.998 496 1.002 C PGS_C08SLe0084H03.1+_SGN-E302460+ (49028 49416,50285 50391) Alignment (genomic DNA sequence = upper lines): ACAAAGAAAG CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT 49087 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGAAAG CAAAAAA-AA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT 59 GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC 49147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC 119 ATTAGGTACA GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT 49207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGGTACA GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT 179 TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC 49267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC 239 AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG 49327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG 299 TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC 49387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC 359 TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG 49447 |||||||||| |||||||||| ||||||||| TTTGGTCTAC TGTACTGCTG GTATCTCAG. .......... .......... .......... 388 ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG 49507 .......... .......... .......... .......... .......... .......... 388 TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT 49567 .......... .......... .......... .......... .......... .......... 388 TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC 49627 .......... .......... .......... .......... .......... .......... 388 TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA 49687 .......... .......... .......... .......... .......... .......... 388 TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA 49747 .......... .......... .......... .......... .......... .......... 388 TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA 49807 .......... .......... .......... .......... .......... .......... 388 GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC 49867 .......... .......... .......... .......... .......... .......... 388 TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA 49927 .......... .......... .......... .......... .......... .......... 388 TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA 49987 .......... .......... .......... .......... .......... .......... 388 TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT 50047 .......... .......... .......... .......... .......... .......... 388 TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA 50107 .......... .......... .......... .......... .......... .......... 388 TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT 50167 .......... .......... .......... .......... .......... .......... 388 TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT 50227 .......... .......... .......... .......... .......... .......... 388 TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG 50287 ||| .......... .......... .......... .......... .......... .......GAG 391 GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 50347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 451 GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGT 50391 |||||||||| |||||||||| |||||||||| |||||||||| |||| GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGT 495 hqPGS_C08SLe0084H03.1+_SGN-E302460+ (49028 49416,50285 50391) ******************************************************************************** EST sequence 97 +strand 534 n (File: SGN-E266334+) 1 AAAGAAAGCA AAAAAAAAAA AGGAAGAAGA GAAAAGCTTC AATCTTTGTG AAAAAATGGC 61 AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT 121 AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA 181 ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC 241 TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT 301 ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT 361 GGTCTACTGT ACTGCTGGTA TCTCAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT 421 TTTCTTGGCA AGGAAATTGT CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT 481 TGGTGCAATC TGTGGTGCTG GTGTTGTGAA GGGCTTCATG GTAGGACCAT ACCA Predicted gene structure (within gDNA segment 48430 to 51042): Exon 1 49030 49416 ( 387 n); cDNA 1 386 ( 386 n); score: 0.992 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50432 ( 148 n); cDNA 387 534 ( 148 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E266334+ 0.994 535 1.002 C PGS_C08SLe0084H03.1+_SGN-E266334+ (49030 49416,50285 50432) Alignment (genomic DNA sequence = upper lines): AAAGAAAGCA AAAAAAAAAA AAAGAAGAAG AAAAAAGCTT CAATCTTTGT GAAAAAATGG 49089 ||||||||| |||||||||| || ||||||| | |||||||| |||||||||| |||||||||| AAAGAAAGC- AAAAAAAAAA AAGGAAGAAG AGAAAAGCTT CAATCTTTGT GAAAAAATGG 59 CAGAAAACAA GGAAGAAGAT GTTAAGCTTG GAGCTAACAA GTTTAGGGAA ACTCAACCAT 49149 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAAACAA GGAAGAAGAT GTTAAGCTTG GAGCTAACAA GTTTAGGGAA ACTCAACCAT 119 TAGGTACAGC AGCTCAAACA GACAAAGATT ACAAAGAGCC ACCACCAGCT CCATTGTTTG 49209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGTACAGC AGCTCAAACA GACAAAGATT ACAAAGAGCC ACCACCAGCT CCATTGTTTG 179 AACCAGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG TTCATGGCAA 49269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCAGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG TTCATGGCAA 239 CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA TCTGATAGTT 49329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA TCTGATAGTT 299 TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG ATCTTTGCTT 49389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG ATCTTTGCTT 359 TGGTCTACTG TACTGCTGGT ATCTCAGGTT GGTTTCATTG CCCCCCTTTT CATTCTTGAT 49449 |||||||||| |||||||||| ||||||| TGGTCTACTG TACTGCTGGT ATCTCAG... .......... .......... .......... 386 GCTAAAGATT GTAACTTTAC TTGTTTTACT TAAAGAGTGA GTTTGTGTTC ATTTATTGTC 49509 .......... .......... .......... .......... .......... .......... 386 TACTGATTGC TTTTGTCAAC TGGTTTTGTG GATTGCTGAG TATGTAGAAG GTAAAGATTT 49569 .......... .......... .......... .......... .......... .......... 386 GTTTTATTTT TACTGGTTTA GAGGTTTGAA ACATGTTAAC TGGTTTGTTT TATGTTTCTT 49629 .......... .......... .......... .......... .......... .......... 386 GATTTCTTTG AGTTGATTCC CTTCTTTTGC TTAAGATAGT TGAGCTTGTG TTCACTTATT 49689 .......... .......... .......... .......... .......... .......... 386 GTGTATATTT GTCGACTAAT TTAATGGATT CTTGATCTTG AGTATAGTCA ATTAAAGATT 49749 .......... .......... .......... .......... .......... .......... 386 CATTTTTCAC TGTTTTTAAA GGTCCAAAAC ATGTTACTGG TTTGATTTCT GTGTCTGAGG 49809 .......... .......... .......... .......... .......... .......... 386 TACAAAAATG GAGTTTGGTG AAGCTTATTC CTTTACCTCT ATACTGTAAA AATATGACTT 49869 .......... .......... .......... .......... .......... .......... 386 CTCTTTATTT TCCTTCGTTC ACTAATTTTG TATCTCATAC TTTTTACAAC TAATTTGATG 49929 .......... .......... .......... .......... .......... .......... 386 GATCCTTGAA GATTCAACCT TTCTTTGTCT TGGAGGTTCA AAACATGTAA ATGGTTTATT 49989 .......... .......... .......... .......... .......... .......... 386 TTCTGAATCT TGTTACTTTA CCCTTTTTAT ATAGCAAGTG TAACACTTTG TGGCTTATTT 50049 .......... .......... .......... .......... .......... .......... 386 CTTTGTTTGC TTGCTTTTGA TCACCATATT TGAGCTTTTA GTTACTTTAT TTGTACCATC 50109 .......... .......... .......... .......... .......... .......... 386 ATACCTTTTT CAACTAATTA ATGGGATCTT GAGTATAATT CACATAAGGG TATAGTTTTT 50169 .......... .......... .......... .......... .......... .......... 386 TCCTGTTTTG AAGTTCAAAG CATGTTACAT ATTTTGTAAA ATGAGTCTTT TCCTTCTTTG 50229 .......... .......... .......... .......... .......... .......... 386 AATAAGGGTT GGCTTGTTTC TCTGATGCTA AATTCTGTGT TTTGATATCA AACAGGAGGA 50289 ||||| .......... .......... .......... .......... .......... .....GAGGA 391 CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC CTTGACCAGG 50349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC CTTGACCAGG 451 GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG TGTTGTGAAG 50409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG TGTTGTGAAG 511 GGCTTCATGG TAGGACCATA CCA 50432 |||||||||| |||||||||| ||| GGCTTCATGG TAGGACCATA CCA 534 hqPGS_C08SLe0084H03.1+_SGN-E266334+ (49030 49416,50285 50432) ******************************************************************************** EST sequence 3 +strand 430 n (File: SGN-E330528+) 1 AGCAAAAAAA AAAAAAGAAG AAGAAAAAAG CTTCAATCTT TGTGAAAAAA TGGCAGAGAA 61 CAAGGAAGAA GATGTTAAGC TTGGAGCTAA CAAGTTTAGG GAAACTCAAC CATTAGGTAC 121 AGCAGCTCAA ACAGACAAAG ATTACAAAGA GCCACCACCA GCTCCATTGT TTGAACCAGG 181 GGAGTTGTCA TCATGGTCCT TTTACAGGGC TGGTATTGCA GAGTTCATGG CAACTTTCTT 241 GTTCTTGTAT ATCACAATCT TGACTGTTAT GGGTCTTAAG AGATCTGATA GTTTATGTTC 301 TTCAGTGGGT ATTCAAGGGG TTGCTTGGGC TTTTGGTGGT ATGATCTTTG CTTTGGTCTA 361 CTGTACTGCT GGTATCTCAG GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT 421 GGCAAGGAAA Predicted gene structure (within gDNA segment 48436 to 50944): Exon 1 49036 49416 ( 381 n); cDNA 1 380 ( 380 n); score: 0.995 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50334 ( 50 n); cDNA 381 430 ( 50 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E330528+ 0.995 431 1.002 C PGS_C08SLe0084H03.1+_SGN-E330528+ (49036 49416,50285 50334) Alignment (genomic DNA sequence = upper lines): AGCAAAAAAA AAAAAAAGAA GAAGAAAAAA GCTTCAATCT TTGTGAAAAA ATGGCAGAAA 49095 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | AGCAA-AAAA AAAAAAAGAA GAAGAAAAAA GCTTCAATCT TTGTGAAAAA ATGGCAGAGA 59 ACAAGGAAGA AGATGTTAAG CTTGGAGCTA ACAAGTTTAG GGAAACTCAA CCATTAGGTA 49155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGGAAGA AGATGTTAAG CTTGGAGCTA ACAAGTTTAG GGAAACTCAA CCATTAGGTA 119 CAGCAGCTCA AACAGACAAA GATTACAAAG AGCCACCACC AGCTCCATTG TTTGAACCAG 49215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCTCA AACAGACAAA GATTACAAAG AGCCACCACC AGCTCCATTG TTTGAACCAG 179 GGGAGTTGTC ATCATGGTCC TTTTACAGGG CTGGTATTGC AGAGTTCATG GCAACTTTCT 49275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGTTGTC ATCATGGTCC TTTTACAGGG CTGGTATTGC AGAGTTCATG GCAACTTTCT 239 TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT 49335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT 299 CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT GCTTTGGTCT 49395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT GCTTTGGTCT 359 ACTGTACTGC TGGTATCTCA GGTTGGTTTC ATTGCCCCCC TTTTCATTCT TGATGCTAAA 49455 |||||||||| |||||||||| | ACTGTACTGC TGGTATCTCA G......... .......... .......... .......... 380 GATTGTAACT TTACTTGTTT TACTTAAAGA GTGAGTTTGT GTTCATTTAT TGTCTACTGA 49515 .......... .......... .......... .......... .......... .......... 380 TTGCTTTTGT CAACTGGTTT TGTGGATTGC TGAGTATGTA GAAGGTAAAG ATTTGTTTTA 49575 .......... .......... .......... .......... .......... .......... 380 TTTTTACTGG TTTAGAGGTT TGAAACATGT TAACTGGTTT GTTTTATGTT TCTTGATTTC 49635 .......... .......... .......... .......... .......... .......... 380 TTTGAGTTGA TTCCCTTCTT TTGCTTAAGA TAGTTGAGCT TGTGTTCACT TATTGTGTAT 49695 .......... .......... .......... .......... .......... .......... 380 ATTTGTCGAC TAATTTAATG GATTCTTGAT CTTGAGTATA GTCAATTAAA GATTCATTTT 49755 .......... .......... .......... .......... .......... .......... 380 TCACTGTTTT TAAAGGTCCA AAACATGTTA CTGGTTTGAT TTCTGTGTCT GAGGTACAAA 49815 .......... .......... .......... .......... .......... .......... 380 AATGGAGTTT GGTGAAGCTT ATTCCTTTAC CTCTATACTG TAAAAATATG ACTTCTCTTT 49875 .......... .......... .......... .......... .......... .......... 380 ATTTTCCTTC GTTCACTAAT TTTGTATCTC ATACTTTTTA CAACTAATTT GATGGATCCT 49935 .......... .......... .......... .......... .......... .......... 380 TGAAGATTCA ACCTTTCTTT GTCTTGGAGG TTCAAAACAT GTAAATGGTT TATTTTCTGA 49995 .......... .......... .......... .......... .......... .......... 380 ATCTTGTTAC TTTACCCTTT TTATATAGCA AGTGTAACAC TTTGTGGCTT ATTTCTTTGT 50055 .......... .......... .......... .......... .......... .......... 380 TTGCTTGCTT TTGATCACCA TATTTGAGCT TTTAGTTACT TTATTTGTAC CATCATACCT 50115 .......... .......... .......... .......... .......... .......... 380 TTTTCAACTA ATTAATGGGA TCTTGAGTAT AATTCACATA AGGGTATAGT TTTTTCCTGT 50175 .......... .......... .......... .......... .......... .......... 380 TTTGAAGTTC AAAGCATGTT ACATATTTTG TAAAATGAGT CTTTTCCTTC TTTGAATAAG 50235 .......... .......... .......... .......... .......... .......... 380 GGTTGGCTTG TTTCTCTGAT GCTAAATTCT GTGTTTTGAT ATCAAACAGG AGGACACATC 50295 | |||||||||| .......... .......... .......... .......... .........G AGGACACATC 391 AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAA 50334 |||||||||| |||||||||| |||||||||| ||||||||| AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAA 430 hqPGS_C08SLe0084H03.1+_SGN-E330528+ (49036 49416,50285 50334) ******************************************************************************** EST sequence 59 +strand 535 n (File: SGN-E291245+) 1 CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC 61 AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 121 GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 181 GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 241 TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 301 TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 361 TGTACTGCTG GTATCTCAGG AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG 421 GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG AGATGCAGTG CCTTGGTGCA 481 ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTG Predicted gene structure (within gDNA segment 48438 to 51050): Exon 1 49038 49416 ( 379 n); cDNA 1 379 ( 379 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50440 ( 156 n); cDNA 380 535 ( 156 n); score: 0.994 MATCH C08SLe0084H03.1+ SGN-E291245+ 0.998 535 1.000 C PGS_C08SLe0084H03.1+_SGN-E291245+ (49038 49416,50285 50440) Alignment (genomic DNA sequence = upper lines): CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC 49097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC 60 AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 49157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 120 GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 49217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 180 GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 49277 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 240 TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 49337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 300 TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 49397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 360 TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG ATGCTAAAGA 49457 |||||||||| ||||||||| TGTACTGCTG GTATCTCAG. .......... .......... .......... .......... 379 TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG TCTACTGATT 49517 .......... .......... .......... .......... .......... .......... 379 GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT TTGTTTTATT 49577 .......... .......... .......... .......... .......... .......... 379 TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC TTGATTTCTT 49637 .......... .......... .......... .......... .......... .......... 379 TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA TTGTGTATAT 49697 .......... .......... .......... .......... .......... .......... 379 TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA TTCATTTTTC 49757 .......... .......... .......... .......... .......... .......... 379 ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA GGTACAAAAA 49817 .......... .......... .......... .......... .......... .......... 379 TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC TTCTCTTTAT 49877 .......... .......... .......... .......... .......... .......... 379 TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA TGGATCCTTG 49937 .......... .......... .......... .......... .......... .......... 379 AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA TTTTCTGAAT 49997 .......... .......... .......... .......... .......... .......... 379 CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT TTCTTTGTTT 50057 .......... .......... .......... .......... .......... .......... 379 GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA TCATACCTTT 50117 .......... .......... .......... .......... .......... .......... 379 TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT TTTCCTGTTT 50177 .......... .......... .......... .......... .......... .......... 379 TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT TGAATAAGGG 50237 .......... .......... .......... .......... .......... .......... 379 TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG GACACATCAA 50297 ||| |||||||||| .......... .......... .......... .......... .......GAG GACACATCAA 392 CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT 50357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT 452 CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT 50417 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACATGGAG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT 512 GGTAGGACCA TACCAAAGAC TTG 50440 |||||||||| |||||||||| ||| GGTAGGACCA TACCAAAGAC TTG 535 hqPGS_C08SLe0084H03.1+_SGN-E291245+ (49038 49416,50285 50440) ******************************************************************************** EST sequence 139 +strand 526 n (File: SGN-E294162+) 1 CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC 61 AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 121 GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 181 GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 241 TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 301 TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 361 TGTACTGCTG GTATCTCAAG AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG 421 GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA 481 ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC CATACC Predicted gene structure (within gDNA segment 48438 to 51041): Exon 1 49038 49416 ( 379 n); cDNA 1 379 ( 379 n); score: 0.997 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 1.00) Exon 2 50285 50431 ( 147 n); cDNA 380 526 ( 147 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E294162+ 0.998 526 1.000 C PGS_C08SLe0084H03.1+_SGN-E294162+ (49038 49416,50285 50431) Alignment (genomic DNA sequence = upper lines): CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC 49097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC 60 AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 49157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 120 GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 49217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 180 GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 49277 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 240 TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 49337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 300 TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 49397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 360 TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG ATGCTAAAGA 49457 |||||||||| |||||||| TGTACTGCTG GTATCTCAA. .......... .......... .......... .......... 379 TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG TCTACTGATT 49517 .......... .......... .......... .......... .......... .......... 379 GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT TTGTTTTATT 49577 .......... .......... .......... .......... .......... .......... 379 TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC TTGATTTCTT 49637 .......... .......... .......... .......... .......... .......... 379 TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA TTGTGTATAT 49697 .......... .......... .......... .......... .......... .......... 379 TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA TTCATTTTTC 49757 .......... .......... .......... .......... .......... .......... 379 ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA GGTACAAAAA 49817 .......... .......... .......... .......... .......... .......... 379 TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC TTCTCTTTAT 49877 .......... .......... .......... .......... .......... .......... 379 TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA TGGATCCTTG 49937 .......... .......... .......... .......... .......... .......... 379 AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA TTTTCTGAAT 49997 .......... .......... .......... .......... .......... .......... 379 CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT TTCTTTGTTT 50057 .......... .......... .......... .......... .......... .......... 379 GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA TCATACCTTT 50117 .......... .......... .......... .......... .......... .......... 379 TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT TTTCCTGTTT 50177 .......... .......... .......... .......... .......... .......... 379 TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT TGAATAAGGG 50237 .......... .......... .......... .......... .......... .......... 379 TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG GACACATCAA 50297 ||| |||||||||| .......... .......... .......... .......... .......GAG GACACATCAA 392 CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT 50357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT 452 CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT 50417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT 512 GGTAGGACCA TACC 50431 |||||||||| |||| GGTAGGACCA TACC 526 hqPGS_C08SLe0084H03.1+_SGN-E294162+ (49038 49416,50285 50431) ******************************************************************************** EST sequence 41 +strand 645 n (File: SGN-E328402+) 1 AAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TNTCAATCTT TGTGAAAAAA TGGCAGAAAA 61 CAAGGAAGAA GATGTTAAGC TTGGAGCTAA CAAGTTTAGG GAAACTCAAC CATTAGGTAC 121 AGCAGCTCAA ACAGACAAAG ATTACAAAGA GCCACCACCA GCTCCATTGT TTGAACCAGG 181 GGAGTTGTCA TCATGGTCCT TTTACAGGGC TGGTATTGCA GAGTTCATGG CAACTTTCTT 241 GTTCTTGTAT ATCACAATCT TGACTGTTAT GGGTCTTAAG AGATCTGATA GTTTATGTTC 301 TTCAGTGGGT ATTCAAGGGG TTGCTTGGGC TTTTGGTGGT ATGATCTTTG CTTTGGTCTA 361 CTGTACTGCT GGTATCTCAG GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT 421 GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC 481 AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 541 TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT 601 TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT GATGC Predicted gene structure (within gDNA segment 48312 to 51159): Exon 1 49039 49416 ( 378 n); cDNA 2 380 ( 379 n); score: 0.993 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50549 ( 265 n); cDNA 381 645 ( 265 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E328402+ 0.996 643 0.997 C PGS_C08SLe0084H03.1+_SGN-E328402+ (49039 49416,50285 50549) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA AAAAGAAGAA GAAAAAAGCT -TCAATCTTT GTGAAAAAAT GGCAGAAAAC 49097 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AAAAAAAAAA AAAAGAAGAA GAAAAAAGCT NTCAATCTTT GTGAAAAAAT GGCAGAAAAC 61 AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 49157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA 121 GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 49217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG 181 GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 49277 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG 241 TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 49337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT 301 TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 49397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC 361 TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG ATGCTAAAGA 49457 |||||||||| ||||||||| TGTACTGCTG GTATCTCAG. .......... .......... .......... .......... 380 TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG TCTACTGATT 49517 .......... .......... .......... .......... .......... .......... 380 GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT TTGTTTTATT 49577 .......... .......... .......... .......... .......... .......... 380 TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC TTGATTTCTT 49637 .......... .......... .......... .......... .......... .......... 380 TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA TTGTGTATAT 49697 .......... .......... .......... .......... .......... .......... 380 TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA TTCATTTTTC 49757 .......... .......... .......... .......... .......... .......... 380 ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA GGTACAAAAA 49817 .......... .......... .......... .......... .......... .......... 380 TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC TTCTCTTTAT 49877 .......... .......... .......... .......... .......... .......... 380 TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA TGGATCCTTG 49937 .......... .......... .......... .......... .......... .......... 380 AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA TTTTCTGAAT 49997 .......... .......... .......... .......... .......... .......... 380 CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT TTCTTTGTTT 50057 .......... .......... .......... .......... .......... .......... 380 GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA TCATACCTTT 50117 .......... .......... .......... .......... .......... .......... 380 TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT TTTCCTGTTT 50177 .......... .......... .......... .......... .......... .......... 380 TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT TGAATAAGGG 50237 .......... .......... .......... .......... .......... .......... 380 TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG GACACATCAA 50297 ||| |||||||||| .......... .......... .......... .......... .......GAG GACACATCAA 393 CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT 50357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT 453 CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT 50417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT 513 GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA 50477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA 573 GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC 50537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC 633 AGCCACTGAT GC 50549 |||||||||| || AGCCACTGAT GC 645 hqPGS_C08SLe0084H03.1+_SGN-E328402+ (49039 49416,50285 50549) ******************************************************************************** EST sequence 119 +strand 641 n (File: SGN-E309073+) 1 AAAAAAAAAA AAGAAGAAGA AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG 61 GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA 121 GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG 181 TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC 241 TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA 301 GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT 361 ACTGCTGGTA TCTCAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA 421 AGGAAATTGT CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC 481 TGTGGTGCTG GTGTTGTGAA GGGCTTCATG GTAGGACCAT ACCAAAGACT TGGTGGTGGT 541 GCTAATGTTG TTAACCCTGG ATACACCAAG GGTGATGGCC TTGGTGCTGA AATTATTGGC 601 ACCTTTGTCC TTGTTTACAC TGTTTTTTCA GCCACTGATG C Predicted gene structure (within gDNA segment 48342 to 51159): Exon 1 49041 49416 ( 376 n); cDNA 1 376 ( 376 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50549 ( 265 n); cDNA 377 641 ( 265 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E309073+ 1.000 641 1.000 C PGS_C08SLe0084H03.1+_SGN-E309073+ (49041 49416,50285 50549) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA AAGAAGAAGA AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG 49100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAAAA AAGAAGAAGA AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG 60 GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA 49160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA 120 GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG 49220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG 180 TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC 49280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC 240 TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA 49340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA 300 GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT 49400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT 360 ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC ATTCTTGATG CTAAAGATTG 49460 |||||||||| |||||| ACTGCTGGTA TCTCAG.... .......... .......... .......... .......... 376 TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA TTTATTGTCT ACTGATTGCT 49520 .......... .......... .......... .......... .......... .......... 376 TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG TAAAGATTTG TTTTATTTTT 49580 .......... .......... .......... .......... .......... .......... 376 ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT ATGTTTCTTG ATTTCTTTGA 49640 .......... .......... .......... .......... .......... .......... 376 GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT TCACTTATTG TGTATATTTG 49700 .......... .......... .......... .......... .......... .......... 376 TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA TTAAAGATTC ATTTTTCACT 49760 .......... .......... .......... .......... .......... .......... 376 GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG TGTCTGAGGT ACAAAAATGG 49820 .......... .......... .......... .......... .......... .......... 376 AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA ATATGACTTC TCTTTATTTT 49880 .......... .......... .......... .......... .......... .......... 376 CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT AATTTGATGG ATCCTTGAAG 49940 .......... .......... .......... .......... .......... .......... 376 ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA TGGTTTATTT TCTGAATCTT 50000 .......... .......... .......... .......... .......... .......... 376 GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT GGCTTATTTC TTTGTTTGCT 50060 .......... .......... .......... .......... .......... .......... 376 TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT TGTACCATCA TACCTTTTTC 50120 .......... .......... .......... .......... .......... .......... 376 AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT ATAGTTTTTT CCTGTTTTGA 50180 .......... .......... .......... .......... .......... .......... 376 AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT CCTTCTTTGA ATAAGGGTTG 50240 .......... .......... .......... .......... .......... .......... 376 GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA ACAGGAGGAC ACATCAACCC 50300 |||||| |||||||||| .......... .......... .......... .......... ....GAGGAC ACATCAACCC 392 AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC TTGACCAGGG CTGTTTTCTA 50360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC TTGACCAGGG CTGTTTTCTA 452 CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT 50420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT 512 AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT AACCCTGGAT ACACCAAGGG 50480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT AACCCTGGAT ACACCAAGGG 572 TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT GTTTACACTG TTTTTTCAGC 50540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT GTTTACACTG TTTTTTCAGC 632 CACTGATGC 50549 ||||||||| CACTGATGC 641 hqPGS_C08SLe0084H03.1+_SGN-E309073+ (49041 49416,50285 50549) ******************************************************************************** EST sequence 23 +strand 521 n (File: SGN-E306314+) 1 AAAAAAAAAA AAGAAGAAGA AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG 61 GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA 121 GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG 181 TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC 241 TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA 301 GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT 361 ACTGCTGGTA TCTCAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA 421 AGGAAATTGT CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC 481 TGTGGTGCTG GTGTTGTGAA GGGCTTCATG GTAGGACCAT A Predicted gene structure (within gDNA segment 48342 to 51039): Exon 1 49041 49416 ( 376 n); cDNA 1 376 ( 376 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50429 ( 145 n); cDNA 377 521 ( 145 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E306314+ 1.000 521 1.000 C PGS_C08SLe0084H03.1+_SGN-E306314+ (49041 49416,50285 50429) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA AAGAAGAAGA AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG 49100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAAAA AAGAAGAAGA AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG 60 GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA 49160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA 120 GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG 49220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG 180 TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC 49280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC 240 TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA 49340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA 300 GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT 49400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT 360 ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC ATTCTTGATG CTAAAGATTG 49460 |||||||||| |||||| ACTGCTGGTA TCTCAG.... .......... .......... .......... .......... 376 TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA TTTATTGTCT ACTGATTGCT 49520 .......... .......... .......... .......... .......... .......... 376 TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG TAAAGATTTG TTTTATTTTT 49580 .......... .......... .......... .......... .......... .......... 376 ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT ATGTTTCTTG ATTTCTTTGA 49640 .......... .......... .......... .......... .......... .......... 376 GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT TCACTTATTG TGTATATTTG 49700 .......... .......... .......... .......... .......... .......... 376 TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA TTAAAGATTC ATTTTTCACT 49760 .......... .......... .......... .......... .......... .......... 376 GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG TGTCTGAGGT ACAAAAATGG 49820 .......... .......... .......... .......... .......... .......... 376 AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA ATATGACTTC TCTTTATTTT 49880 .......... .......... .......... .......... .......... .......... 376 CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT AATTTGATGG ATCCTTGAAG 49940 .......... .......... .......... .......... .......... .......... 376 ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA TGGTTTATTT TCTGAATCTT 50000 .......... .......... .......... .......... .......... .......... 376 GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT GGCTTATTTC TTTGTTTGCT 50060 .......... .......... .......... .......... .......... .......... 376 TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT TGTACCATCA TACCTTTTTC 50120 .......... .......... .......... .......... .......... .......... 376 AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT ATAGTTTTTT CCTGTTTTGA 50180 .......... .......... .......... .......... .......... .......... 376 AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT CCTTCTTTGA ATAAGGGTTG 50240 .......... .......... .......... .......... .......... .......... 376 GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA ACAGGAGGAC ACATCAACCC 50300 |||||| |||||||||| .......... .......... .......... .......... ....GAGGAC ACATCAACCC 392 AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC TTGACCAGGG CTGTTTTCTA 50360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC TTGACCAGGG CTGTTTTCTA 452 CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT 50420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT 512 AGGACCATA 50429 ||||||||| AGGACCATA 521 hqPGS_C08SLe0084H03.1+_SGN-E306314+ (49041 49416,50285 50429) ******************************************************************************** EST sequence 141 +strand 496 n (File: SGN-E331650+) 1 AAAAAAAAAA AGAAGAAGAG AAAAGCTGGA ATCTTTGTGA AAAAATGGCA GAAAACAAGG 61 AAGAAGATGT TAAGCTTGGA GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG 121 CTCAAACAGA CAAAGATTAC AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT 181 TGTCATCATG GTCCTTTTAC AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT 241 TGTATATCAC AATCTTGACT GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG 301 CGGGTATTCA AGGGGTTGCT TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA 361 CTGCTGGTAT CTCAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA 421 GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT 481 GTGGTGCTGG TGTTGT Predicted gene structure (within gDNA segment 48181 to 51015): Exon 1 49042 49416 ( 375 n); cDNA 1 375 ( 375 n); score: 0.989 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50405 ( 121 n); cDNA 376 496 ( 121 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E331650+ 0.992 496 1.000 C PGS_C08SLe0084H03.1+_SGN-E331650+ (49042 49416,50285 50405) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA AGAAGAAGAA AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG 49101 |||||||||| ||||||||| ||||||| | |||||||||| |||||||||| |||||||||| AAAAAAAAAA AGAAGAAGAG AAAAGCTGGA ATCTTTGTGA AAAAATGGCA GAAAACAAGG 60 AAGAAGATGT TAAGCTTGGA GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG 49161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGATGT TAAGCTTGGA GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG 120 CTCAAACAGA CAAAGATTAC AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT 49221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAACAGA CAAAGATTAC AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT 180 TGTCATCATG GTCCTTTTAC AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT 49281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCATCATG GTCCTTTTAC AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT 240 TGTATATCAC AATCTTGACT GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG 49341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATATCAC AATCTTGACT GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG 300 TGGGTATTCA AGGGGTTGCT TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA 49401 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGTATTCA AGGGGTTGCT TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA 360 CTGCTGGTAT CTCAGGTTGG TTTCATTGCC CCCCTTTTCA TTCTTGATGC TAAAGATTGT 49461 |||||||||| ||||| CTGCTGGTAT CTCAG..... .......... .......... .......... .......... 375 AACTTTACTT GTTTTACTTA AAGAGTGAGT TTGTGTTCAT TTATTGTCTA CTGATTGCTT 49521 .......... .......... .......... .......... .......... .......... 375 TTGTCAACTG GTTTTGTGGA TTGCTGAGTA TGTAGAAGGT AAAGATTTGT TTTATTTTTA 49581 .......... .......... .......... .......... .......... .......... 375 CTGGTTTAGA GGTTTGAAAC ATGTTAACTG GTTTGTTTTA TGTTTCTTGA TTTCTTTGAG 49641 .......... .......... .......... .......... .......... .......... 375 TTGATTCCCT TCTTTTGCTT AAGATAGTTG AGCTTGTGTT CACTTATTGT GTATATTTGT 49701 .......... .......... .......... .......... .......... .......... 375 CGACTAATTT AATGGATTCT TGATCTTGAG TATAGTCAAT TAAAGATTCA TTTTTCACTG 49761 .......... .......... .......... .......... .......... .......... 375 TTTTTAAAGG TCCAAAACAT GTTACTGGTT TGATTTCTGT GTCTGAGGTA CAAAAATGGA 49821 .......... .......... .......... .......... .......... .......... 375 GTTTGGTGAA GCTTATTCCT TTACCTCTAT ACTGTAAAAA TATGACTTCT CTTTATTTTC 49881 .......... .......... .......... .......... .......... .......... 375 CTTCGTTCAC TAATTTTGTA TCTCATACTT TTTACAACTA ATTTGATGGA TCCTTGAAGA 49941 .......... .......... .......... .......... .......... .......... 375 TTCAACCTTT CTTTGTCTTG GAGGTTCAAA ACATGTAAAT GGTTTATTTT CTGAATCTTG 50001 .......... .......... .......... .......... .......... .......... 375 TTACTTTACC CTTTTTATAT AGCAAGTGTA ACACTTTGTG GCTTATTTCT TTGTTTGCTT 50061 .......... .......... .......... .......... .......... .......... 375 GCTTTTGATC ACCATATTTG AGCTTTTAGT TACTTTATTT GTACCATCAT ACCTTTTTCA 50121 .......... .......... .......... .......... .......... .......... 375 ACTAATTAAT GGGATCTTGA GTATAATTCA CATAAGGGTA TAGTTTTTTC CTGTTTTGAA 50181 .......... .......... .......... .......... .......... .......... 375 GTTCAAAGCA TGTTACATAT TTTGTAAAAT GAGTCTTTTC CTTCTTTGAA TAAGGGTTGG 50241 .......... .......... .......... .......... .......... .......... 375 CTTGTTTCTC TGATGCTAAA TTCTGTGTTT TGATATCAAA CAGGAGGACA CATCAACCCA 50301 ||||||| |||||||||| .......... .......... .......... .......... ...GAGGACA CATCAACCCA 392 GCTGTGACCT TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC 50361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTGACCT TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC 452 ATGGTGATGC AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGT 50405 |||||||||| |||||||||| |||||||||| |||||||||| |||| ATGGTGATGC AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGT 496 hqPGS_C08SLe0084H03.1+_SGN-E331650+ (49042 49416,50285 50405) ******************************************************************************** EST sequence 55 +strand 678 n (File: SGN-E342238+) 1 AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA 61 AGAAGATGTT AAGCTTGGAG CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC 121 TCAAACAGAC AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT 181 GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT 241 GTATATCACA ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT 301 GGGTATTCAA GGGGTTGCTT GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC 361 TGCTGGTATC TCAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG 421 GAAATTGTCC TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG 481 TGGTGCTGGT GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC 541 TAATGTTGTT AACCCTGGAT CACCAAGGGT GATGGCCTTG GTGCTGAAAT TATTGGCACC 601 TTTGTCCTTG TTTACACTGT TTTTTCAGCC ACTGATGCCA AGAGAAATGC CAGAGACTCA 661 CATGTTCCTA TTTTGGCA Predicted gene structure (within gDNA segment 48362 to 51280): Exon 1 49043 49416 ( 374 n); cDNA 1 374 ( 374 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 375 669 ( 295 n); score: 0.997 MATCH C08SLe0084H03.1+ SGN-E342238+ 0.999 670 0.988 C PGS_C08SLe0084H03.1+_SGN-E342238+ (49043 49416,50285 50580) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA 49102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAAAA GAAGAAGAAA AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA 60 AGAAGATGTT AAGCTTGGAG CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC 49162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGATGTT AAGCTTGGAG CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC 120 TCAAACAGAC AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT 49222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAACAGAC AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT 180 GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT 49282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT 240 GTATATCACA ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT 49342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATATCACA ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT 300 GGGTATTCAA GGGGTTGCTT GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC 49402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTATTCAA GGGGTTGCTT GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC 360 TGCTGGTATC TCAGGTTGGT TTCATTGCCC CCCTTTTCAT TCTTGATGCT AAAGATTGTA 49462 |||||||||| |||| TGCTGGTATC TCAG...... .......... .......... .......... .......... 374 ACTTTACTTG TTTTACTTAA AGAGTGAGTT TGTGTTCATT TATTGTCTAC TGATTGCTTT 49522 .......... .......... .......... .......... .......... .......... 374 TGTCAACTGG TTTTGTGGAT TGCTGAGTAT GTAGAAGGTA AAGATTTGTT TTATTTTTAC 49582 .......... .......... .......... .......... .......... .......... 374 TGGTTTAGAG GTTTGAAACA TGTTAACTGG TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT 49642 .......... .......... .......... .......... .......... .......... 374 TGATTCCCTT CTTTTGCTTA AGATAGTTGA GCTTGTGTTC ACTTATTGTG TATATTTGTC 49702 .......... .......... .......... .......... .......... .......... 374 GACTAATTTA ATGGATTCTT GATCTTGAGT ATAGTCAATT AAAGATTCAT TTTTCACTGT 49762 .......... .......... .......... .......... .......... .......... 374 TTTTAAAGGT CCAAAACATG TTACTGGTTT GATTTCTGTG TCTGAGGTAC AAAAATGGAG 49822 .......... .......... .......... .......... .......... .......... 374 TTTGGTGAAG CTTATTCCTT TACCTCTATA CTGTAAAAAT ATGACTTCTC TTTATTTTCC 49882 .......... .......... .......... .......... .......... .......... 374 TTCGTTCACT AATTTTGTAT CTCATACTTT TTACAACTAA TTTGATGGAT CCTTGAAGAT 49942 .......... .......... .......... .......... .......... .......... 374 TCAACCTTTC TTTGTCTTGG AGGTTCAAAA CATGTAAATG GTTTATTTTC TGAATCTTGT 50002 .......... .......... .......... .......... .......... .......... 374 TACTTTACCC TTTTTATATA GCAAGTGTAA CACTTTGTGG CTTATTTCTT TGTTTGCTTG 50062 .......... .......... .......... .......... .......... .......... 374 CTTTTGATCA CCATATTTGA GCTTTTAGTT ACTTTATTTG TACCATCATA CCTTTTTCAA 50122 .......... .......... .......... .......... .......... .......... 374 CTAATTAATG GGATCTTGAG TATAATTCAC ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG 50182 .......... .......... .......... .......... .......... .......... 374 TTCAAAGCAT GTTACATATT TTGTAAAATG AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC 50242 .......... .......... .......... .......... .......... .......... 374 TTGTTTCTCT GATGCTAAAT TCTGTGTTTT GATATCAAAC AGGAGGACAC ATCAACCCAG 50302 |||||||| |||||||||| .......... .......... .......... .......... ..GAGGACAC ATCAACCCAG 392 CTGTGACCTT TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA 50362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGACCTT TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA 452 TGGTGATGCA GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG 50422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGATGCA GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG 512 GACCATACCA AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG 50482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GACCATACCA AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGAT-C ACCAAGGGTG 571 ATGGCCTTGG TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA 50542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCCTTGG TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA 631 CTGATGCCAA GAGAAATGCC AGAGACTCAC ATGTTCCT 50580 |||||||||| |||||||||| |||||||||| |||||||| CTGATGCCAA GAGAAATGCC AGAGACTCAC ATGTTCCT 669 hqPGS_C08SLe0084H03.1+_SGN-E342238+ (49043 49416,50285 50580) ******************************************************************************** EST sequence 105 +strand 576 n (File: SGN-E394111+) 1 AAAAAAAAGA AGAAGAAAAA AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG 61 AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC 121 AAACAGACAA AGATTACAAA GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT 181 CATCATGGTC CTTTTACAGG GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT 241 ATATCACAAT CTTGACTGTT ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG 301 GTATTCAAGG GGTTGCTTGG GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG 361 CTGGTATCTC AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 421 AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 481 GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA AAGACTTGGT GGTGGTGCTA 541 ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCC Predicted gene structure (within gDNA segment 48382 to 51098): Exon 1 49045 49416 ( 372 n); cDNA 1 372 ( 372 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50488 ( 204 n); cDNA 373 576 ( 204 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E394111+ 1.000 576 1.000 C PGS_C08SLe0084H03.1+_SGN-E394111+ (49045 49416,50285 50488) Alignment (genomic DNA sequence = upper lines): AAAAAAAAGA AGAAGAAAAA AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG 49104 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAAGA AGAAGAAAAA AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG 60 AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC 49164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC 120 AAACAGACAA AGATTACAAA GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT 49224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGACAA AGATTACAAA GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT 180 CATCATGGTC CTTTTACAGG GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT 49284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCATGGTC CTTTTACAGG GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT 240 ATATCACAAT CTTGACTGTT ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG 49344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCACAAT CTTGACTGTT ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG 300 GTATTCAAGG GGTTGCTTGG GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG 49404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTCAAGG GGTTGCTTGG GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG 360 CTGGTATCTC AGGTTGGTTT CATTGCCCCC CTTTTCATTC TTGATGCTAA AGATTGTAAC 49464 |||||||||| || CTGGTATCTC AG........ .......... .......... .......... .......... 372 TTTACTTGTT TTACTTAAAG AGTGAGTTTG TGTTCATTTA TTGTCTACTG ATTGCTTTTG 49524 .......... .......... .......... .......... .......... .......... 372 TCAACTGGTT TTGTGGATTG CTGAGTATGT AGAAGGTAAA GATTTGTTTT ATTTTTACTG 49584 .......... .......... .......... .......... .......... .......... 372 GTTTAGAGGT TTGAAACATG TTAACTGGTT TGTTTTATGT TTCTTGATTT CTTTGAGTTG 49644 .......... .......... .......... .......... .......... .......... 372 ATTCCCTTCT TTTGCTTAAG ATAGTTGAGC TTGTGTTCAC TTATTGTGTA TATTTGTCGA 49704 .......... .......... .......... .......... .......... .......... 372 CTAATTTAAT GGATTCTTGA TCTTGAGTAT AGTCAATTAA AGATTCATTT TTCACTGTTT 49764 .......... .......... .......... .......... .......... .......... 372 TTAAAGGTCC AAAACATGTT ACTGGTTTGA TTTCTGTGTC TGAGGTACAA AAATGGAGTT 49824 .......... .......... .......... .......... .......... .......... 372 TGGTGAAGCT TATTCCTTTA CCTCTATACT GTAAAAATAT GACTTCTCTT TATTTTCCTT 49884 .......... .......... .......... .......... .......... .......... 372 CGTTCACTAA TTTTGTATCT CATACTTTTT ACAACTAATT TGATGGATCC TTGAAGATTC 49944 .......... .......... .......... .......... .......... .......... 372 AACCTTTCTT TGTCTTGGAG GTTCAAAACA TGTAAATGGT TTATTTTCTG AATCTTGTTA 50004 .......... .......... .......... .......... .......... .......... 372 CTTTACCCTT TTTATATAGC AAGTGTAACA CTTTGTGGCT TATTTCTTTG TTTGCTTGCT 50064 .......... .......... .......... .......... .......... .......... 372 TTTGATCACC ATATTTGAGC TTTTAGTTAC TTTATTTGTA CCATCATACC TTTTTCAACT 50124 .......... .......... .......... .......... .......... .......... 372 AATTAATGGG ATCTTGAGTA TAATTCACAT AAGGGTATAG TTTTTTCCTG TTTTGAAGTT 50184 .......... .......... .......... .......... .......... .......... 372 CAAAGCATGT TACATATTTT GTAAAATGAG TCTTTTCCTT CTTTGAATAA GGGTTGGCTT 50244 .......... .......... .......... .......... .......... .......... 372 GTTTCTCTGA TGCTAAATTC TGTGTTTTGA TATCAAACAG GAGGACACAT CAACCCAGCT 50304 |||||||||| |||||||||| .......... .......... .......... .......... GAGGACACAT CAACCCAGCT 392 GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG 50364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG 452 GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA 50424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA 512 CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT 50484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT 572 GGCC 50488 |||| GGCC 576 hqPGS_C08SLe0084H03.1+_SGN-E394111+ (49045 49416,50285 50488) ******************************************************************************** EST sequence 112 +strand 744 n (File: SGN-E333565+) 1 AAAAAAAGAA GAAGAAAAAA GCTTCAATCT TTGTGAAAAA ATGGCAGAAA ACAAGGAAGA 61 AGATGTTAAG CTTGGAGCTA ACAAGTTTAG GGAAACTCAA CCATTAGGTA CAGCAGCTCA 121 AACAGACAAA GATTACAAAG AGCCACCACC AGCTCCATTG TTTGAACCAG GGGAGTTGTC 181 ATCATGGTCC TTTTACAGGG CTGGTATTGC AGAGTTCATG GCAACTTTCT TGTTCTTGTA 241 TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT CTTCAGTGGG 301 TATTCAAGGG GTTGCTTGGG CTTTTTGTGG TATGATCTTT GCTTTGGTCT ACTGTACTGC 361 TGGTATCTCA GGAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGCAAGGAA 421 ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG CAATCTGTGG 481 TGCTGGTGTT GTGAAGGGCT TCATGGTAGG ACCATACCAA AGACTTGGTG GTGGTGCTAA 541 TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT GCTGAAATTA TTGGCACCTT 601 TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGATGCCAAG AGAAATGCCA GAGACTCACA 661 TGTTCCTATT TTGGCACCAC TTCCCTATGG ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC 721 CATCCCCATC ACCGGAACTG GCAT Predicted gene structure (within gDNA segment 48392 to 52297): Exon 1 49046 49416 ( 371 n); cDNA 1 371 ( 371 n); score: 0.997 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 372 667 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 0.94) Exon 3 51611 51687 ( 77 n); cDNA 668 744 ( 77 n); score: 0.961 MATCH C08SLe0084H03.1+ SGN-E333565+ 0.995 744 1.000 C PGS_C08SLe0084H03.1+_SGN-E333565+ (49046 49416,50285 50580,51611 51687) Alignment (genomic DNA sequence = upper lines): AAAAAAAGAA GAAGAAAAAA GCTTCAATCT TTGTGAAAAA ATGGCAGAAA ACAAGGAAGA 49105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAGAA GAAGAAAAAA GCTTCAATCT TTGTGAAAAA ATGGCAGAAA ACAAGGAAGA 60 AGATGTTAAG CTTGGAGCTA ACAAGTTTAG GGAAACTCAA CCATTAGGTA CAGCAGCTCA 49165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGTTAAG CTTGGAGCTA ACAAGTTTAG GGAAACTCAA CCATTAGGTA CAGCAGCTCA 120 AACAGACAAA GATTACAAAG AGCCACCACC AGCTCCATTG TTTGAACCAG GGGAGTTGTC 49225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGACAAA GATTACAAAG AGCCACCACC AGCTCCATTG TTTGAACCAG GGGAGTTGTC 180 ATCATGGTCC TTTTACAGGG CTGGTATTGC AGAGTTCATG GCAACTTTCT TGTTCTTGTA 49285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATGGTCC TTTTACAGGG CTGGTATTGC AGAGTTCATG GCAACTTTCT TGTTCTTGTA 240 TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT CTTCAGTGGG 49345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT CTTCAGTGGG 300 TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT GCTTTGGTCT ACTGTACTGC 49405 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TATTCAAGGG GTTGCTTGGG CTTTTTGTGG TATGATCTTT GCTTTGGTCT ACTGTACTGC 360 TGGTATCTCA GGTTGGTTTC ATTGCCCCCC TTTTCATTCT TGATGCTAAA GATTGTAACT 49465 |||||||||| | TGGTATCTCA G......... .......... .......... .......... .......... 371 TTACTTGTTT TACTTAAAGA GTGAGTTTGT GTTCATTTAT TGTCTACTGA TTGCTTTTGT 49525 .......... .......... .......... .......... .......... .......... 371 CAACTGGTTT TGTGGATTGC TGAGTATGTA GAAGGTAAAG ATTTGTTTTA TTTTTACTGG 49585 .......... .......... .......... .......... .......... .......... 371 TTTAGAGGTT TGAAACATGT TAACTGGTTT GTTTTATGTT TCTTGATTTC TTTGAGTTGA 49645 .......... .......... .......... .......... .......... .......... 371 TTCCCTTCTT TTGCTTAAGA TAGTTGAGCT TGTGTTCACT TATTGTGTAT ATTTGTCGAC 49705 .......... .......... .......... .......... .......... .......... 371 TAATTTAATG GATTCTTGAT CTTGAGTATA GTCAATTAAA GATTCATTTT TCACTGTTTT 49765 .......... .......... .......... .......... .......... .......... 371 TAAAGGTCCA AAACATGTTA CTGGTTTGAT TTCTGTGTCT GAGGTACAAA AATGGAGTTT 49825 .......... .......... .......... .......... .......... .......... 371 GGTGAAGCTT ATTCCTTTAC CTCTATACTG TAAAAATATG ACTTCTCTTT ATTTTCCTTC 49885 .......... .......... .......... .......... .......... .......... 371 GTTCACTAAT TTTGTATCTC ATACTTTTTA CAACTAATTT GATGGATCCT TGAAGATTCA 49945 .......... .......... .......... .......... .......... .......... 371 ACCTTTCTTT GTCTTGGAGG TTCAAAACAT GTAAATGGTT TATTTTCTGA ATCTTGTTAC 50005 .......... .......... .......... .......... .......... .......... 371 TTTACCCTTT TTATATAGCA AGTGTAACAC TTTGTGGCTT ATTTCTTTGT TTGCTTGCTT 50065 .......... .......... .......... .......... .......... .......... 371 TTGATCACCA TATTTGAGCT TTTAGTTACT TTATTTGTAC CATCATACCT TTTTCAACTA 50125 .......... .......... .......... .......... .......... .......... 371 ATTAATGGGA TCTTGAGTAT AATTCACATA AGGGTATAGT TTTTTCCTGT TTTGAAGTTC 50185 .......... .......... .......... .......... .......... .......... 371 AAAGCATGTT ACATATTTTG TAAAATGAGT CTTTTCCTTC TTTGAATAAG GGTTGGCTTG 50245 .......... .......... .......... .......... .......... .......... 371 TTTCTCTGAT GCTAAATTCT GTGTTTTGAT ATCAAACAGG AGGACACATC AACCCAGCTG 50305 | |||||||||| |||||||||| .......... .......... .......... .........G AGGACACATC AACCCAGCTG 392 TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG 50365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG 452 TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC 50425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC 512 CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG 50485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG 572 GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 50545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 632 ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCTGTAAG TGTTTTCCTC TTGTAGTTTT 50605 |||||||||| |||||||||| |||||||||| ||||| ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCT..... .......... .......... 667 ATTTCTTCTT TGTGATATCA AGTTTGCTTA TCATGGATAT TTACATGTTA ATTCTAAGCT 50665 .......... .......... .......... .......... .......... .......... 667 AGAGTCTAAC CAGAAATTTT GGAAGTAGTT TCTGAAAATT TATCAATGAT ATATGTGACT 50725 .......... .......... .......... .......... .......... .......... 667 TTACATTACA TAGTTTGACG ATAAGTGAAG CGTGACAAGT AAAAATGATC GTAGGGCCAA 50785 .......... .......... .......... .......... .......... .......... 667 CTTGTTACCC TACATTGTCT GATGAGAAGT GAAAAGTGAC AAGTAAAAAT GACCGTAGGG 50845 .......... .......... .......... .......... .......... .......... 667 CCAACTTGTT ACCATACATA GTTTGACGAG AAGTGAAAAG TGATTTTATG ACAAGTAAAA 50905 .......... .......... .......... .......... .......... .......... 667 GTGAACGGAG GGTATTAAAC AACCAACTTG CTATAACATG TTAAATTACT CTAGTAGGGT 50965 .......... .......... .......... .......... .......... .......... 667 AAAAGTTCAT TGTACTGTTT AATGTATGTA AAAAGTTGAA ATCTTGCAAG ACAAGTGGGT 51025 .......... .......... .......... .......... .......... .......... 667 CTTACTTTTT GGTAAGTTAG GCAAAAATAT TGTTCATGCT ATAGCATGTG GCATGTCTGG 51085 .......... .......... .......... .......... .......... .......... 667 TTTTGTCAGC AAGTCCTTTT AGTTGGTGTA GGGTTATGTT GTGGGCCTAA TTGAGTTAGG 51145 .......... .......... .......... .......... .......... .......... 667 CTAAAGATAG TGATGTTCAT GTGATAAGTT ATTGTAACTG TGGACTTTTT CTTGTCATGG 51205 .......... .......... .......... .......... .......... .......... 667 AGTGGCTCGC CACGTCACAG TGTTGTGGAC CTTTAGGTCA TCTCCGATCC ATAACACCAA 51265 .......... .......... .......... .......... .......... .......... 667 CTTTTATACT AAAAACGTGT ATCAAATGCG CTACACTGAT TGTTCGACAT AATATTATAT 51325 .......... .......... .......... .......... .......... .......... 667 AAAGAATGAT TTGGTATATT AGGGAGTTTT CAAAAACGTA GAATTTATAC GTTGAGTTAA 51385 .......... .......... .......... .......... .......... .......... 667 GTTTCTTTGT ATTTTGTGGA GTGGAGATGT AAATGACACC AAATTTCATA TTATTGTAGT 51445 .......... .......... .......... .......... .......... .......... 667 GTCCGGATAA TGGTGTGATA CTATTCATCA ACGCCTATTT TATATAGAAT GATCACATAA 51505 .......... .......... .......... .......... .......... .......... 667 GAACATTGTT GGCCAGTCTT AGCTCACCAC AACTATCTTT TTGCGCTTAT GTCTAAGAGA 51565 .......... .......... .......... .......... .......... .......... 667 AATCCTTGGA AGACATTTGT CTGATAATCT TTATGTTTAT TGTAGATTTT GGCACCACTT 51625 ||||| |||||||||| .......... .......... .......... .......... .....ATTTT GGCACCACTT 682 CCTATTGGAT TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC 51685 || ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTATGGAT TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC 742 AT 51687 || AT 744 hqPGS_C08SLe0084H03.1+_SGN-E333565+ (49046 49416,50285 50580,51611 51687) ******************************************************************************** EST sequence 57 +strand 618 n (File: SGN-E285488+) 1 AAAAAGAGAA GAAAAAGCGT AATCTTTGTG AAAAAATGGC AGAAAACAAG GAAGAAGATG 61 TTAAGCTTGG AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA GCTCAAACAG 121 ACAAAGATTA CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG TTGTCATCAT 181 GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC TTGTATATCA 241 CAATCTTGAC TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA GTGGGTATTC 301 AAGGGGTTGC TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT ACTGCTGGTA 361 TCTCAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA AGGAAATTGT 421 CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC TGTGGTGCTG 481 GTGTTGTGAA GGGCTTCATG GTAGGACCAT ACCAAAGACT TGGTGGTGGT GCTAATGTTG 541 TTAACCCTGG ATACACCAAG GGTGATGGCC TTGGTGCTGA AATTATTGGC ACCTTTGTCC 601 TTGTTTACAC TGTTTTTT Predicted gene structure (within gDNA segment 48271 to 51146): Exon 1 49048 49416 ( 369 n); cDNA 1 366 ( 366 n); score: 0.989 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50536 ( 252 n); cDNA 367 618 ( 252 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E285488+ 0.994 621 1.005 C PGS_C08SLe0084H03.1+_SGN-E285488+ (49048 49416,50285 50536) Alignment (genomic DNA sequence = upper lines): AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG 49107 |||||| ||| || ||||||| | ||||||| |||||||||| |||||||||| |||||||||| AAAAAG-AGA AG-AAAAAGC GT-AATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG 57 ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA GCAGCTCAAA 49167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA GCAGCTCAAA 117 CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT 49227 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT 177 CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA 49287 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA 237 TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA 49347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA 297 TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG 49407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG 357 GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG ATGCTAAAGA TTGTAACTTT 49467 ||||||||| GTATCTCAG. .......... .......... .......... .......... .......... 366 ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG TCTACTGATT GCTTTTGTCA 49527 .......... .......... .......... .......... .......... .......... 366 ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT TTGTTTTATT TTTACTGGTT 49587 .......... .......... .......... .......... .......... .......... 366 TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC TTGATTTCTT TGAGTTGATT 49647 .......... .......... .......... .......... .......... .......... 366 CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA TTGTGTATAT TTGTCGACTA 49707 .......... .......... .......... .......... .......... .......... 366 ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA TTCATTTTTC ACTGTTTTTA 49767 .......... .......... .......... .......... .......... .......... 366 AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA GGTACAAAAA TGGAGTTTGG 49827 .......... .......... .......... .......... .......... .......... 366 TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC TTCTCTTTAT TTTCCTTCGT 49887 .......... .......... .......... .......... .......... .......... 366 TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA TGGATCCTTG AAGATTCAAC 49947 .......... .......... .......... .......... .......... .......... 366 CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA TTTTCTGAAT CTTGTTACTT 50007 .......... .......... .......... .......... .......... .......... 366 TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT TTCTTTGTTT GCTTGCTTTT 50067 .......... .......... .......... .......... .......... .......... 366 GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA TCATACCTTT TTCAACTAAT 50127 .......... .......... .......... .......... .......... .......... 366 TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT TTTCCTGTTT TGAAGTTCAA 50187 .......... .......... .......... .......... .......... .......... 366 AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT TGAATAAGGG TTGGCTTGTT 50247 .......... .......... .......... .......... .......... .......... 366 TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG GACACATCAA CCCAGCTGTG 50307 ||| |||||||||| |||||||||| .......... .......... .......... .......GAG GACACATCAA CCCAGCTGTG 389 ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG 50367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG 449 ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA 50427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA 509 TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC 50487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC 569 CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTT 50536 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTT 618 hqPGS_C08SLe0084H03.1+_SGN-E285488+ (49048 49416,50285 50536) ******************************************************************************** EST sequence 58 +strand 493 n (File: SGN-E307384+) 1 AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT 61 TGGAGCCTAA CAAGTTTAGG GAAACTCAAC CATTAGGTAC AGCAGCTCAA ACAGACAAAG 121 ATTACAAAGA GCCACCACCA GCTCCATTGT TTGAACCAGG GGAGTTGTCA TCATGGTCCT 181 TTTACAGGGC TGGTATTGCA GAGTTCATGG CAACTTTCTT GTTCTTGTAT ATCACAATCT 241 TGACTGTTAT GGGTCTTAAG AGATCTGATA GTTTATGTTC TTCAGTGGGT ATTCAAGGGG 301 TTGCTTGGGC TTTTGGTGGT ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG 361 GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 421 CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG 481 TGAAGGGCTT CAT Predicted gene structure (within gDNA segment 48458 to 51027): Exon 1 49058 49416 ( 359 n); cDNA 1 360 ( 360 n); score: 0.993 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50417 ( 133 n); cDNA 361 493 ( 133 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E307384+ 0.995 492 0.998 C PGS_C08SLe0084H03.1+_SGN-E307384+ (49058 49416,50285 50417) Alignment (genomic DNA sequence = upper lines): AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT 49117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT 60 TGGAG-CTAA CAAGTTTAGG GAAACTCAAC CATTAGGTAC AGCAGCTCAA ACAGACAAAG 49176 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCCTAA CAAGTTTAGG GAAACTCAAC CATTAGGTAC AGCAGCTCAA ACAGACAAAG 120 ATTACAAAGA GCCACCACCA GCTCCATTGT TTGAACCAGG GGAGTTGTCA TCATGGTCCT 49236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACAAAGA GCCACCACCA GCTCCATTGT TTGAACCAGG GGAGTTGTCA TCATGGTCCT 180 TTTACAGGGC TGGTATTGCA GAGTTCATGG CAACTTTCTT GTTCTTGTAT ATCACAATCT 49296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAGGGC TGGTATTGCA GAGTTCATGG CAACTTTCTT GTTCTTGTAT ATCACAATCT 240 TGACTGTTAT GGGTCTTAAG AGATCTGATA GTTTATGTTC TTCAGTGGGT ATTCAAGGGG 49356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTGTTAT GGGTCTTAAG AGATCTGATA GTTTATGTTC TTCAGTGGGT ATTCAAGGGG 300 TTGCTTGGGC TTTTGGTGGT ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG 49416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTGGGC TTTTGGTGGT ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG 360 GTTGGTTTCA TTGCCCCCCT TTTCATTCTT GATGCTAAAG ATTGTAACTT TACTTGTTTT 49476 .......... .......... .......... .......... .......... .......... 360 ACTTAAAGAG TGAGTTTGTG TTCATTTATT GTCTACTGAT TGCTTTTGTC AACTGGTTTT 49536 .......... .......... .......... .......... .......... .......... 360 GTGGATTGCT GAGTATGTAG AAGGTAAAGA TTTGTTTTAT TTTTACTGGT TTAGAGGTTT 49596 .......... .......... .......... .......... .......... .......... 360 GAAACATGTT AACTGGTTTG TTTTATGTTT CTTGATTTCT TTGAGTTGAT TCCCTTCTTT 49656 .......... .......... .......... .......... .......... .......... 360 TGCTTAAGAT AGTTGAGCTT GTGTTCACTT ATTGTGTATA TTTGTCGACT AATTTAATGG 49716 .......... .......... .......... .......... .......... .......... 360 ATTCTTGATC TTGAGTATAG TCAATTAAAG ATTCATTTTT CACTGTTTTT AAAGGTCCAA 49776 .......... .......... .......... .......... .......... .......... 360 AACATGTTAC TGGTTTGATT TCTGTGTCTG AGGTACAAAA ATGGAGTTTG GTGAAGCTTA 49836 .......... .......... .......... .......... .......... .......... 360 TTCCTTTACC TCTATACTGT AAAAATATGA CTTCTCTTTA TTTTCCTTCG TTCACTAATT 49896 .......... .......... .......... .......... .......... .......... 360 TTGTATCTCA TACTTTTTAC AACTAATTTG ATGGATCCTT GAAGATTCAA CCTTTCTTTG 49956 .......... .......... .......... .......... .......... .......... 360 TCTTGGAGGT TCAAAACATG TAAATGGTTT ATTTTCTGAA TCTTGTTACT TTACCCTTTT 50016 .......... .......... .......... .......... .......... .......... 360 TATATAGCAA GTGTAACACT TTGTGGCTTA TTTCTTTGTT TGCTTGCTTT TGATCACCAT 50076 .......... .......... .......... .......... .......... .......... 360 ATTTGAGCTT TTAGTTACTT TATTTGTACC ATCATACCTT TTTCAACTAA TTAATGGGAT 50136 .......... .......... .......... .......... .......... .......... 360 CTTGAGTATA ATTCACATAA GGGTATAGTT TTTTCCTGTT TTGAAGTTCA AAGCATGTTA 50196 .......... .......... .......... .......... .......... .......... 360 CATATTTTGT AAAATGAGTC TTTTCCTTCT TTGAATAAGG GTTGGCTTGT TTCTCTGATG 50256 .......... .......... .......... .......... .......... .......... 360 CTAAATTCTG TGTTTTGATA TCAAACAGGA GGACACATCA ACCCAGCTGT GACCTTTGGT 50316 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA GGACACATCA ACCCAGCTGT GACCTTTGGT 392 CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT GATGCAGTGC 50376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT GATGCAGTGC 452 CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA T 50417 |||||||||| |||||||||| |||||||||| |||||||||| | CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA T 493 hqPGS_C08SLe0084H03.1+_SGN-E307384+ (49058 49416,50285 50417) ******************************************************************************** EST sequence 99 +strand 464 n (File: SGN-E275040+) 1 AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT 61 TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA GCAGCTCAAA CAGACAAAGA 121 TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT 181 TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT 241 GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT 301 TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG 361 AGGACACATC AACCCAACTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC 421 CAGGGCTGTT TTCTACATGG AGATGCAGTG CCTTGGTGCA ATCT Predicted gene structure (within gDNA segment 48458 to 50999): Exon 1 49058 49416 ( 359 n); cDNA 1 359 ( 359 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 0.98) Exon 2 50285 50389 ( 105 n); cDNA 360 464 ( 105 n); score: 0.981 MATCH C08SLe0084H03.1+ SGN-E275040+ 0.996 464 1.000 C PGS_C08SLe0084H03.1+_SGN-E275040+ (49058 49416,50285 50389) Alignment (genomic DNA sequence = upper lines): AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT 49117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAAAGC TTCAATCTTT GTGAAAAAAT GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT 60 TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA GCAGCTCAAA CAGACAAAGA 49177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCTAAC AAGTTTAGGG AAACTCAACC ATTAGGTACA GCAGCTCAAA CAGACAAAGA 120 TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT 49237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAAAGAG CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT 180 TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT 49297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAGGGCT GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT 240 GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT 49357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTGTTATG GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT 300 TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG 49417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCTTGGGCT TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAG. 359 TTGGTTTCAT TGCCCCCCTT TTCATTCTTG ATGCTAAAGA TTGTAACTTT ACTTGTTTTA 49477 .......... .......... .......... .......... .......... .......... 359 CTTAAAGAGT GAGTTTGTGT TCATTTATTG TCTACTGATT GCTTTTGTCA ACTGGTTTTG 49537 .......... .......... .......... .......... .......... .......... 359 TGGATTGCTG AGTATGTAGA AGGTAAAGAT TTGTTTTATT TTTACTGGTT TAGAGGTTTG 49597 .......... .......... .......... .......... .......... .......... 359 AAACATGTTA ACTGGTTTGT TTTATGTTTC TTGATTTCTT TGAGTTGATT CCCTTCTTTT 49657 .......... .......... .......... .......... .......... .......... 359 GCTTAAGATA GTTGAGCTTG TGTTCACTTA TTGTGTATAT TTGTCGACTA ATTTAATGGA 49717 .......... .......... .......... .......... .......... .......... 359 TTCTTGATCT TGAGTATAGT CAATTAAAGA TTCATTTTTC ACTGTTTTTA AAGGTCCAAA 49777 .......... .......... .......... .......... .......... .......... 359 ACATGTTACT GGTTTGATTT CTGTGTCTGA GGTACAAAAA TGGAGTTTGG TGAAGCTTAT 49837 .......... .......... .......... .......... .......... .......... 359 TCCTTTACCT CTATACTGTA AAAATATGAC TTCTCTTTAT TTTCCTTCGT TCACTAATTT 49897 .......... .......... .......... .......... .......... .......... 359 TGTATCTCAT ACTTTTTACA ACTAATTTGA TGGATCCTTG AAGATTCAAC CTTTCTTTGT 49957 .......... .......... .......... .......... .......... .......... 359 CTTGGAGGTT CAAAACATGT AAATGGTTTA TTTTCTGAAT CTTGTTACTT TACCCTTTTT 50017 .......... .......... .......... .......... .......... .......... 359 ATATAGCAAG TGTAACACTT TGTGGCTTAT TTCTTTGTTT GCTTGCTTTT GATCACCATA 50077 .......... .......... .......... .......... .......... .......... 359 TTTGAGCTTT TAGTTACTTT ATTTGTACCA TCATACCTTT TTCAACTAAT TAATGGGATC 50137 .......... .......... .......... .......... .......... .......... 359 TTGAGTATAA TTCACATAAG GGTATAGTTT TTTCCTGTTT TGAAGTTCAA AGCATGTTAC 50197 .......... .......... .......... .......... .......... .......... 359 ATATTTTGTA AAATGAGTCT TTTCCTTCTT TGAATAAGGG TTGGCTTGTT TCTCTGATGC 50257 .......... .......... .......... .......... .......... .......... 359 TAAATTCTGT GTTTTGATAT CAAACAGGAG GACACATCAA CCCAGCTGTG ACCTTTGGTC 50317 ||| |||||||||| |||| ||||| |||||||||| .......... .......... .......GAG GACACATCAA CCCAACTGTG ACCTTTGGTC 392 TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC 50377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGAG ATGCAGTGCC 452 TTGGTGCAAT CT 50389 |||||||||| || TTGGTGCAAT CT 464 hqPGS_C08SLe0084H03.1+_SGN-E275040+ (49058 49416,50285 50389) ******************************************************************************** EST sequence 26 +strand 621 n (File: SGN-E305748+) 1 AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG 61 GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 121 ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 181 ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 241 CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 301 CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGAG 361 GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 421 GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 481 AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 541 GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA 601 CTGTTTTTTC AGCCACTGAT G Predicted gene structure (within gDNA segment 48460 to 51158): Exon 1 49060 49416 ( 357 n); cDNA 1 357 ( 357 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50548 ( 264 n); cDNA 358 621 ( 264 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E305748+ 1.000 621 1.000 C PGS_C08SLe0084H03.1+_SGN-E305748+ (49060 49416,50285 50548) Alignment (genomic DNA sequence = upper lines): AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG 49119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG 60 GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 49179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 120 ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 49239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 180 ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 49299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 240 CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 49359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 300 CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGTT 49419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAG... 357 GGTTTCATTG CCCCCCTTTT CATTCTTGAT GCTAAAGATT GTAACTTTAC TTGTTTTACT 49479 .......... .......... .......... .......... .......... .......... 357 TAAAGAGTGA GTTTGTGTTC ATTTATTGTC TACTGATTGC TTTTGTCAAC TGGTTTTGTG 49539 .......... .......... .......... .......... .......... .......... 357 GATTGCTGAG TATGTAGAAG GTAAAGATTT GTTTTATTTT TACTGGTTTA GAGGTTTGAA 49599 .......... .......... .......... .......... .......... .......... 357 ACATGTTAAC TGGTTTGTTT TATGTTTCTT GATTTCTTTG AGTTGATTCC CTTCTTTTGC 49659 .......... .......... .......... .......... .......... .......... 357 TTAAGATAGT TGAGCTTGTG TTCACTTATT GTGTATATTT GTCGACTAAT TTAATGGATT 49719 .......... .......... .......... .......... .......... .......... 357 CTTGATCTTG AGTATAGTCA ATTAAAGATT CATTTTTCAC TGTTTTTAAA GGTCCAAAAC 49779 .......... .......... .......... .......... .......... .......... 357 ATGTTACTGG TTTGATTTCT GTGTCTGAGG TACAAAAATG GAGTTTGGTG AAGCTTATTC 49839 .......... .......... .......... .......... .......... .......... 357 CTTTACCTCT ATACTGTAAA AATATGACTT CTCTTTATTT TCCTTCGTTC ACTAATTTTG 49899 .......... .......... .......... .......... .......... .......... 357 TATCTCATAC TTTTTACAAC TAATTTGATG GATCCTTGAA GATTCAACCT TTCTTTGTCT 49959 .......... .......... .......... .......... .......... .......... 357 TGGAGGTTCA AAACATGTAA ATGGTTTATT TTCTGAATCT TGTTACTTTA CCCTTTTTAT 50019 .......... .......... .......... .......... .......... .......... 357 ATAGCAAGTG TAACACTTTG TGGCTTATTT CTTTGTTTGC TTGCTTTTGA TCACCATATT 50079 .......... .......... .......... .......... .......... .......... 357 TGAGCTTTTA GTTACTTTAT TTGTACCATC ATACCTTTTT CAACTAATTA ATGGGATCTT 50139 .......... .......... .......... .......... .......... .......... 357 GAGTATAATT CACATAAGGG TATAGTTTTT TCCTGTTTTG AAGTTCAAAG CATGTTACAT 50199 .......... .......... .......... .......... .......... .......... 357 ATTTTGTAAA ATGAGTCTTT TCCTTCTTTG AATAAGGGTT GGCTTGTTTC TCTGATGCTA 50259 .......... .......... .......... .......... .......... .......... 357 AATTCTGTGT TTTGATATCA AACAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT 50319 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT 392 TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT 50379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT 452 GGTGCAATCT GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT 50439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAATCT GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT 512 GGTGGTGGTG CTAATGTTGT TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA 50499 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGTGGTG CTAATGTTGT TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA 572 ATTATTGGCA CCTTTGTCCT TGTTTACACT GTTTTTTCAG CCACTGATG 50548 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTATTGGCA CCTTTGTCCT TGTTTACACT GTTTTTTCAG CCACTGATG 621 hqPGS_C08SLe0084H03.1+_SGN-E305748+ (49060 49416,50285 50548) ******************************************************************************** EST sequence 50 +strand 585 n (File: SGN-E304243+) 1 AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG 61 GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 121 ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 181 ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 241 CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 301 CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGAG 361 GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 421 GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 481 AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 541 GATACACCAA AGGTGATGGC CTTGGTGCTG AAATTATTGG CACCT Predicted gene structure (within gDNA segment 48460 to 51122): Exon 1 49060 49416 ( 357 n); cDNA 1 357 ( 357 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50512 ( 228 n); cDNA 358 585 ( 228 n); score: 0.996 MATCH C08SLe0084H03.1+ SGN-E304243+ 0.998 585 1.000 C PGS_C08SLe0084H03.1+_SGN-E304243+ (49060 49416,50285 50512) Alignment (genomic DNA sequence = upper lines): AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG 49119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG 60 GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 49179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 120 ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 49239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 180 ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 49299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 240 CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 49359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 300 CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGTT 49419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAG... 357 GGTTTCATTG CCCCCCTTTT CATTCTTGAT GCTAAAGATT GTAACTTTAC TTGTTTTACT 49479 .......... .......... .......... .......... .......... .......... 357 TAAAGAGTGA GTTTGTGTTC ATTTATTGTC TACTGATTGC TTTTGTCAAC TGGTTTTGTG 49539 .......... .......... .......... .......... .......... .......... 357 GATTGCTGAG TATGTAGAAG GTAAAGATTT GTTTTATTTT TACTGGTTTA GAGGTTTGAA 49599 .......... .......... .......... .......... .......... .......... 357 ACATGTTAAC TGGTTTGTTT TATGTTTCTT GATTTCTTTG AGTTGATTCC CTTCTTTTGC 49659 .......... .......... .......... .......... .......... .......... 357 TTAAGATAGT TGAGCTTGTG TTCACTTATT GTGTATATTT GTCGACTAAT TTAATGGATT 49719 .......... .......... .......... .......... .......... .......... 357 CTTGATCTTG AGTATAGTCA ATTAAAGATT CATTTTTCAC TGTTTTTAAA GGTCCAAAAC 49779 .......... .......... .......... .......... .......... .......... 357 ATGTTACTGG TTTGATTTCT GTGTCTGAGG TACAAAAATG GAGTTTGGTG AAGCTTATTC 49839 .......... .......... .......... .......... .......... .......... 357 CTTTACCTCT ATACTGTAAA AATATGACTT CTCTTTATTT TCCTTCGTTC ACTAATTTTG 49899 .......... .......... .......... .......... .......... .......... 357 TATCTCATAC TTTTTACAAC TAATTTGATG GATCCTTGAA GATTCAACCT TTCTTTGTCT 49959 .......... .......... .......... .......... .......... .......... 357 TGGAGGTTCA AAACATGTAA ATGGTTTATT TTCTGAATCT TGTTACTTTA CCCTTTTTAT 50019 .......... .......... .......... .......... .......... .......... 357 ATAGCAAGTG TAACACTTTG TGGCTTATTT CTTTGTTTGC TTGCTTTTGA TCACCATATT 50079 .......... .......... .......... .......... .......... .......... 357 TGAGCTTTTA GTTACTTTAT TTGTACCATC ATACCTTTTT CAACTAATTA ATGGGATCTT 50139 .......... .......... .......... .......... .......... .......... 357 GAGTATAATT CACATAAGGG TATAGTTTTT TCCTGTTTTG AAGTTCAAAG CATGTTACAT 50199 .......... .......... .......... .......... .......... .......... 357 ATTTTGTAAA ATGAGTCTTT TCCTTCTTTG AATAAGGGTT GGCTTGTTTC TCTGATGCTA 50259 .......... .......... .......... .......... .......... .......... 357 AATTCTGTGT TTTGATATCA AACAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT 50319 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT 392 TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT 50379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT 452 GGTGCAATCT GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT 50439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAATCT GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT 512 GGTGGTGGTG CTAATGTTGT TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA 50499 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GGTGGTGGTG CTAATGTTGT TAACCCTGGA TACACCAAAG GTGATGGCCT TGGTGCTGAA 572 ATTATTGGCA CCT 50512 |||||||||| ||| ATTATTGGCA CCT 585 hqPGS_C08SLe0084H03.1+_SGN-E304243+ (49060 49416,50285 50512) ******************************************************************************** EST sequence 32 +strand 476 n (File: SGN-E295476+) 1 AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAGGAT GTTAAGCTTG 61 GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 121 ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 181 ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 241 CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 301 CTTGGGCTTT TGGTGGTATG ATCTTTGCTA TGGTCTACTG TACTGCTGGT ATCTCAGGAG 361 GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 421 GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTT Predicted gene structure (within gDNA segment 48460 to 51013): Exon 1 49060 49416 ( 357 n); cDNA 1 357 ( 357 n); score: 0.994 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 1.00) Exon 2 50285 50403 ( 119 n); cDNA 358 476 ( 119 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E295476+ 0.996 476 1.000 C PGS_C08SLe0084H03.1+_SGN-E295476+ (49060 49416,50285 50403) Alignment (genomic DNA sequence = upper lines): AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG 49119 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| AAAAAAGCTT CAATCTTTGT GAAAAAATGG CAGAAAACAA GGAAGAGGAT GTTAAGCTTG 60 GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 49179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTAACAA GTTTAGGGAA ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT 120 ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 49239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGAGCC ACCACCAGCT CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT 180 ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 49299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA 240 CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 49359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG 300 CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGTT 49419 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||| CTTGGGCTTT TGGTGGTATG ATCTTTGCTA TGGTCTACTG TACTGCTGGT ATCTCAG... 357 GGTTTCATTG CCCCCCTTTT CATTCTTGAT GCTAAAGATT GTAACTTTAC TTGTTTTACT 49479 .......... .......... .......... .......... .......... .......... 357 TAAAGAGTGA GTTTGTGTTC ATTTATTGTC TACTGATTGC TTTTGTCAAC TGGTTTTGTG 49539 .......... .......... .......... .......... .......... .......... 357 GATTGCTGAG TATGTAGAAG GTAAAGATTT GTTTTATTTT TACTGGTTTA GAGGTTTGAA 49599 .......... .......... .......... .......... .......... .......... 357 ACATGTTAAC TGGTTTGTTT TATGTTTCTT GATTTCTTTG AGTTGATTCC CTTCTTTTGC 49659 .......... .......... .......... .......... .......... .......... 357 TTAAGATAGT TGAGCTTGTG TTCACTTATT GTGTATATTT GTCGACTAAT TTAATGGATT 49719 .......... .......... .......... .......... .......... .......... 357 CTTGATCTTG AGTATAGTCA ATTAAAGATT CATTTTTCAC TGTTTTTAAA GGTCCAAAAC 49779 .......... .......... .......... .......... .......... .......... 357 ATGTTACTGG TTTGATTTCT GTGTCTGAGG TACAAAAATG GAGTTTGGTG AAGCTTATTC 49839 .......... .......... .......... .......... .......... .......... 357 CTTTACCTCT ATACTGTAAA AATATGACTT CTCTTTATTT TCCTTCGTTC ACTAATTTTG 49899 .......... .......... .......... .......... .......... .......... 357 TATCTCATAC TTTTTACAAC TAATTTGATG GATCCTTGAA GATTCAACCT TTCTTTGTCT 49959 .......... .......... .......... .......... .......... .......... 357 TGGAGGTTCA AAACATGTAA ATGGTTTATT TTCTGAATCT TGTTACTTTA CCCTTTTTAT 50019 .......... .......... .......... .......... .......... .......... 357 ATAGCAAGTG TAACACTTTG TGGCTTATTT CTTTGTTTGC TTGCTTTTGA TCACCATATT 50079 .......... .......... .......... .......... .......... .......... 357 TGAGCTTTTA GTTACTTTAT TTGTACCATC ATACCTTTTT CAACTAATTA ATGGGATCTT 50139 .......... .......... .......... .......... .......... .......... 357 GAGTATAATT CACATAAGGG TATAGTTTTT TCCTGTTTTG AAGTTCAAAG CATGTTACAT 50199 .......... .......... .......... .......... .......... .......... 357 ATTTTGTAAA ATGAGTCTTT TCCTTCTTTG AATAAGGGTT GGCTTGTTTC TCTGATGCTA 50259 .......... .......... .......... .......... .......... .......... 357 AATTCTGTGT TTTGATATCA AACAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT 50319 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT 392 TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT 50379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT 452 GGTGCAATCT GTGGTGCTGG TGTT 50403 |||||||||| |||||||||| |||| GGTGCAATCT GTGGTGCTGG TGTT 476 hqPGS_C08SLe0084H03.1+_SGN-E295476+ (49060 49416,50285 50403) ******************************************************************************** EST sequence 136 +strand 461 n (File: SGN-E301336+) 1 AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG 61 AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA 121 CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA 181 CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC 241 TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC 301 TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGAGG 361 ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA AGGAAATTGT CCTTGACCAG 421 GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC T Predicted gene structure (within gDNA segment 48461 to 50999): Exon 1 49061 49416 ( 356 n); cDNA 1 356 ( 356 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50389 ( 105 n); cDNA 357 461 ( 105 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E301336+ 1.000 461 1.000 C PGS_C08SLe0084H03.1+_SGN-E301336+ (49061 49416,50285 50389) Alignment (genomic DNA sequence = upper lines): AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG 49120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTTC AATCTTTGTG AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG 60 AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA 49180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAACAAG TTTAGGGAAA CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA 120 CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA 49240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAGCCA CCACCAGCTC CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA 180 CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC 49300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGCTGGT ATTGCAGAGT TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC 240 TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC 49360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATGGGT CTTAAGAGAT CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC 300 TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG 49420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGGGCTTTT GGTGGTATGA TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAG.... 356 GTTTCATTGC CCCCCTTTTC ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT 49480 .......... .......... .......... .......... .......... .......... 356 AAAGAGTGAG TTTGTGTTCA TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG 49540 .......... .......... .......... .......... .......... .......... 356 ATTGCTGAGT ATGTAGAAGG TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA 49600 .......... .......... .......... .......... .......... .......... 356 CATGTTAACT GGTTTGTTTT ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT 49660 .......... .......... .......... .......... .......... .......... 356 TAAGATAGTT GAGCTTGTGT TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC 49720 .......... .......... .......... .......... .......... .......... 356 TTGATCTTGA GTATAGTCAA TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA 49780 .......... .......... .......... .......... .......... .......... 356 TGTTACTGGT TTGATTTCTG TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC 49840 .......... .......... .......... .......... .......... .......... 356 TTTACCTCTA TACTGTAAAA ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT 49900 .......... .......... .......... .......... .......... .......... 356 ATCTCATACT TTTTACAACT AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT 49960 .......... .......... .......... .......... .......... .......... 356 GGAGGTTCAA AACATGTAAA TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA 50020 .......... .......... .......... .......... .......... .......... 356 TAGCAAGTGT AACACTTTGT GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT 50080 .......... .......... .......... .......... .......... .......... 356 GAGCTTTTAG TTACTTTATT TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG 50140 .......... .......... .......... .......... .......... .......... 356 AGTATAATTC ACATAAGGGT ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA 50200 .......... .......... .......... .......... .......... .......... 356 TTTTGTAAAA TGAGTCTTTT CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA 50260 .......... .......... .......... .......... .......... .......... 356 ATTCTGTGTT TTGATATCAA ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT 50320 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT 392 TCTTGGCAAG GAAATTGTCC TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG 50380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGGCAAG GAAATTGTCC TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG 452 GTGCAATCT 50389 ||||||||| GTGCAATCT 461 hqPGS_C08SLe0084H03.1+_SGN-E301336+ (49061 49416,50285 50389) ******************************************************************************** EST sequence 106 +strand 752 n (File: SGN-E549021+) 1 AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA 61 GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC 121 AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC 181 AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT 241 GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGTGATGG 301 CCTTGGTGCT GAAATTATTG GCACCTTTGT CCTTGTTTAC ACTGTTTTTT CAGCCACTGA 361 TGCCAAGAGA AATGCCAGAG ACTCACATGT TCCTATTTTG GCACCACTTC CTATTGGATT 421 CGCAGTGTTC TTGGTTCATT TGGCCACCAT CCCCATCACC GGAACTGGCA TCAACCCCGC 481 CAGGAGTCTT GGAGCTGCTA TCATCTACAA CGACGAGCAT GCATGGAATG ACCACTGGAT 541 CTTCTGGGTT GGACCAATGA TTGGAGCTGC TCTTGCTGCT ATTTACCACC AAATAATTAT 601 CAGAGCTATG CCATTCCACA GGTCTTAAGT TATCTGTCTT TAAACAATGG GATTCTCAAA 661 GACTCAACAG TGTACTTTTG TCTTCTTTTT TTGGGGGGGT GAATGTTCAA GTTTCTCCCT 721 TCATGTATTT GTAATGTGGA TCTGTTCCTT CT Predicted gene structure (within gDNA segment 48462 to 52698): Exon 1 49062 49353 ( 292 n); cDNA 1 292 ( 292 n); score: 1.000 Intron 1 49354 50478 (1125 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 50479 50580 ( 102 n); cDNA 293 394 ( 102 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 395 535 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51872 52088 ( 217 n); cDNA 536 752 ( 217 n); score: 0.982 MATCH C08SLe0084H03.1+ SGN-E549021+ 0.995 752 1.000 C PGS_C08SLe0084H03.1+_SGN-E549021+ (49062 49353,50479 50580,51611 51751,51872 52088) Alignment (genomic DNA sequence = upper lines): AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA 49121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA 60 GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC 49181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC 120 AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC 49241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC 180 AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT 49301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT 240 GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGGTTGCT 49361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AG........ 292 TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT CTCAGGTTGG 49421 .......... .......... .......... .......... .......... .......... 292 TTTCATTGCC CCCCTTTTCA TTCTTGATGC TAAAGATTGT AACTTTACTT GTTTTACTTA 49481 .......... .......... .......... .......... .......... .......... 292 AAGAGTGAGT TTGTGTTCAT TTATTGTCTA CTGATTGCTT TTGTCAACTG GTTTTGTGGA 49541 .......... .......... .......... .......... .......... .......... 292 TTGCTGAGTA TGTAGAAGGT AAAGATTTGT TTTATTTTTA CTGGTTTAGA GGTTTGAAAC 49601 .......... .......... .......... .......... .......... .......... 292 ATGTTAACTG GTTTGTTTTA TGTTTCTTGA TTTCTTTGAG TTGATTCCCT TCTTTTGCTT 49661 .......... .......... .......... .......... .......... .......... 292 AAGATAGTTG AGCTTGTGTT CACTTATTGT GTATATTTGT CGACTAATTT AATGGATTCT 49721 .......... .......... .......... .......... .......... .......... 292 TGATCTTGAG TATAGTCAAT TAAAGATTCA TTTTTCACTG TTTTTAAAGG TCCAAAACAT 49781 .......... .......... .......... .......... .......... .......... 292 GTTACTGGTT TGATTTCTGT GTCTGAGGTA CAAAAATGGA GTTTGGTGAA GCTTATTCCT 49841 .......... .......... .......... .......... .......... .......... 292 TTACCTCTAT ACTGTAAAAA TATGACTTCT CTTTATTTTC CTTCGTTCAC TAATTTTGTA 49901 .......... .......... .......... .......... .......... .......... 292 TCTCATACTT TTTACAACTA ATTTGATGGA TCCTTGAAGA TTCAACCTTT CTTTGTCTTG 49961 .......... .......... .......... .......... .......... .......... 292 GAGGTTCAAA ACATGTAAAT GGTTTATTTT CTGAATCTTG TTACTTTACC CTTTTTATAT 50021 .......... .......... .......... .......... .......... .......... 292 AGCAAGTGTA ACACTTTGTG GCTTATTTCT TTGTTTGCTT GCTTTTGATC ACCATATTTG 50081 .......... .......... .......... .......... .......... .......... 292 AGCTTTTAGT TACTTTATTT GTACCATCAT ACCTTTTTCA ACTAATTAAT GGGATCTTGA 50141 .......... .......... .......... .......... .......... .......... 292 GTATAATTCA CATAAGGGTA TAGTTTTTTC CTGTTTTGAA GTTCAAAGCA TGTTACATAT 50201 .......... .......... .......... .......... .......... .......... 292 TTTGTAAAAT GAGTCTTTTC CTTCTTTGAA TAAGGGTTGG CTTGTTTCTC TGATGCTAAA 50261 .......... .......... .......... .......... .......... .......... 292 TTCTGTGTTT TGATATCAAA CAGGAGGACA CATCAACCCA GCTGTGACCT TTGGTCTTTT 50321 .......... .......... .......... .......... .......... .......... 292 CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC AGTGCCTTGG 50381 .......... .......... .......... .......... .......... .......... 292 TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA GGACCATACC AAAGACTTGG 50441 .......... .......... .......... .......... .......... .......... 292 TGGTGGTGCT AATGTTGTTA ACCCTGGATA CACCAAGGGT GATGGCCTTG GTGCTGAAAT 50501 ||| |||||||||| |||||||||| .......... .......... .......... .......GGT GATGGCCTTG GTGCTGAAAT 315 TATTGGCACC TTTGTCCTTG TTTACACTGT TTTTTCAGCC ACTGATGCCA AGAGAAATGC 50561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGCACC TTTGTCCTTG TTTACACTGT TTTTTCAGCC ACTGATGCCA AGAGAAATGC 375 CAGAGACTCA CATGTTCCTG TAAGTGTTTT CCTCTTGTAG TTTTATTTCT TCTTTGTGAT 50621 |||||||||| ||||||||| CAGAGACTCA CATGTTCCT. .......... .......... .......... .......... 394 ATCAAGTTTG CTTATCATGG ATATTTACAT GTTAATTCTA AGCTAGAGTC TAACCAGAAA 50681 .......... .......... .......... .......... .......... .......... 394 TTTTGGAAGT AGTTTCTGAA AATTTATCAA TGATATATGT GACTTTACAT TACATAGTTT 50741 .......... .......... .......... .......... .......... .......... 394 GACGATAAGT GAAGCGTGAC AAGTAAAAAT GATCGTAGGG CCAACTTGTT ACCCTACATT 50801 .......... .......... .......... .......... .......... .......... 394 GTCTGATGAG AAGTGAAAAG TGACAAGTAA AAATGACCGT AGGGCCAACT TGTTACCATA 50861 .......... .......... .......... .......... .......... .......... 394 CATAGTTTGA CGAGAAGTGA AAAGTGATTT TATGACAAGT AAAAGTGAAC GGAGGGTATT 50921 .......... .......... .......... .......... .......... .......... 394 AAACAACCAA CTTGCTATAA CATGTTAAAT TACTCTAGTA GGGTAAAAGT TCATTGTACT 50981 .......... .......... .......... .......... .......... .......... 394 GTTTAATGTA TGTAAAAAGT TGAAATCTTG CAAGACAAGT GGGTCTTACT TTTTGGTAAG 51041 .......... .......... .......... .......... .......... .......... 394 TTAGGCAAAA ATATTGTTCA TGCTATAGCA TGTGGCATGT CTGGTTTTGT CAGCAAGTCC 51101 .......... .......... .......... .......... .......... .......... 394 TTTTAGTTGG TGTAGGGTTA TGTTGTGGGC CTAATTGAGT TAGGCTAAAG ATAGTGATGT 51161 .......... .......... .......... .......... .......... .......... 394 TCATGTGATA AGTTATTGTA ACTGTGGACT TTTTCTTGTC ATGGAGTGGC TCGCCACGTC 51221 .......... .......... .......... .......... .......... .......... 394 ACAGTGTTGT GGACCTTTAG GTCATCTCCG ATCCATAACA CCAACTTTTA TACTAAAAAC 51281 .......... .......... .......... .......... .......... .......... 394 GTGTATCAAA TGCGCTACAC TGATTGTTCG ACATAATATT ATATAAAGAA TGATTTGGTA 51341 .......... .......... .......... .......... .......... .......... 394 TATTAGGGAG TTTTCAAAAA CGTAGAATTT ATACGTTGAG TTAAGTTTCT TTGTATTTTG 51401 .......... .......... .......... .......... .......... .......... 394 TGGAGTGGAG ATGTAAATGA CACCAAATTT CATATTATTG TAGTGTCCGG ATAATGGTGT 51461 .......... .......... .......... .......... .......... .......... 394 GATACTATTC ATCAACGCCT ATTTTATATA GAATGATCAC ATAAGAACAT TGTTGGCCAG 51521 .......... .......... .......... .......... .......... .......... 394 TCTTAGCTCA CCACAACTAT CTTTTTGCGC TTATGTCTAA GAGAAATCCT TGGAAGACAT 51581 .......... .......... .......... .......... .......... .......... 394 TTGTCTGATA ATCTTTATGT TTATTGTAGA TTTTGGCACC ACTTCCTATT GGATTCGCAG 51641 | |||||||||| |||||||||| |||||||||| .......... .......... .........A TTTTGGCACC ACTTCCTATT GGATTCGCAG 425 TGTTCTTGGT TCATTTGGCC ACCATCCCCA TCACCGGAAC TGGCATCAAC CCCGCCAGGA 51701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCTTGGT TCATTTGGCC ACCATCCCCA TCACCGGAAC TGGCATCAAC CCCGCCAGGA 485 GTCTTGGAGC TGCTATCATC TACAACGACG AGCATGCATG GAATGACCAC GTAAGAAAAA 51761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTGGAGC TGCTATCATC TACAACGACG AGCATGCATG GAATGACCAC .......... 535 CATCTTTCAT TCTTTTAAAC TGACTCGAAC ACCACAGTTA CTTGAACCAA AAAAAGGAGA 51821 .......... .......... .......... .......... .......... .......... 535 GCTTAATCTA ACAAAGGGGT TCTTGTTTGT TTTTTGTTGT TTTTGAACAG TGGATCTTCT 51881 |||||||||| .......... .......... .......... .......... .......... TGGATCTTCT 545 GGGTTGGACC AATGATTGGA GCTGCTCTTG CTGCTATTTA CCACCAAATA ATTATCAGAG 51941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTGGACC AATGATTGGA GCTGCTCTTG CTGCTATTTA CCACCAAATA ATTATCAGAG 605 CTATGCCATT CCACAGGTCT TAAGTTATCT GTCTTTAAAC AATGGGATTC TCAAAGACTC 52001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGCCATT CCACAGGTCT TAAGTTATCT GTCTTTAAAC AATGGGATTC TCAAAGACTC 665 AACAGTGTAC TTTTGTCTTC TTTTTTTGGG GGGTTGAATG TTCAAGTTTC TCCTTCAATG 52061 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||| | ||| AACAGTGTAC TTTTGTCTTC TTTTTTTGGG GGGGTGAATG TTCAAGTTTC TCCCTTCATG 725 TATTTGTAAT GTGGATCTGT TCCTTCT 52088 |||||||||| |||||||||| ||||||| TATTTGTAAT GTGGATCTGT TCCTTCT 752 hqPGS_C08SLe0084H03.1+_SGN-E549021+ (49062 49353,50479 50580,51611 51751,51872 52088) ******************************************************************************** EST sequence 115 +strand 545 n (File: SGN-E247338+) 1 AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA 61 GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC 121 AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC 181 AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT 241 GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGGTTGCT 301 TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT CTCAGGAGGA 361 CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC CTTGACCAGG 421 GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG TGTTGTGAAG 481 GGCTTCATGG TAGGACCATA CCAAAGACTT GGTGGTGGTG CTAATGTTGT TAACCCTGGA 541 TACAC Predicted gene structure (within gDNA segment 48462 to 51084): Exon 1 49062 49416 ( 355 n); cDNA 1 355 ( 355 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50474 ( 190 n); cDNA 356 545 ( 190 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E247338+ 1.000 545 1.000 C PGS_C08SLe0084H03.1+_SGN-E247338+ (49062 49416,50285 50474) Alignment (genomic DNA sequence = upper lines): AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA 49121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA 60 GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC 49181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC 120 AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC 49241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC 180 AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT 49301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT 240 GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGGTTGCT 49361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGGTTGCT 300 TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT CTCAGGTTGG 49421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT CTCAG..... 355 TTTCATTGCC CCCCTTTTCA TTCTTGATGC TAAAGATTGT AACTTTACTT GTTTTACTTA 49481 .......... .......... .......... .......... .......... .......... 355 AAGAGTGAGT TTGTGTTCAT TTATTGTCTA CTGATTGCTT TTGTCAACTG GTTTTGTGGA 49541 .......... .......... .......... .......... .......... .......... 355 TTGCTGAGTA TGTAGAAGGT AAAGATTTGT TTTATTTTTA CTGGTTTAGA GGTTTGAAAC 49601 .......... .......... .......... .......... .......... .......... 355 ATGTTAACTG GTTTGTTTTA TGTTTCTTGA TTTCTTTGAG TTGATTCCCT TCTTTTGCTT 49661 .......... .......... .......... .......... .......... .......... 355 AAGATAGTTG AGCTTGTGTT CACTTATTGT GTATATTTGT CGACTAATTT AATGGATTCT 49721 .......... .......... .......... .......... .......... .......... 355 TGATCTTGAG TATAGTCAAT TAAAGATTCA TTTTTCACTG TTTTTAAAGG TCCAAAACAT 49781 .......... .......... .......... .......... .......... .......... 355 GTTACTGGTT TGATTTCTGT GTCTGAGGTA CAAAAATGGA GTTTGGTGAA GCTTATTCCT 49841 .......... .......... .......... .......... .......... .......... 355 TTACCTCTAT ACTGTAAAAA TATGACTTCT CTTTATTTTC CTTCGTTCAC TAATTTTGTA 49901 .......... .......... .......... .......... .......... .......... 355 TCTCATACTT TTTACAACTA ATTTGATGGA TCCTTGAAGA TTCAACCTTT CTTTGTCTTG 49961 .......... .......... .......... .......... .......... .......... 355 GAGGTTCAAA ACATGTAAAT GGTTTATTTT CTGAATCTTG TTACTTTACC CTTTTTATAT 50021 .......... .......... .......... .......... .......... .......... 355 AGCAAGTGTA ACACTTTGTG GCTTATTTCT TTGTTTGCTT GCTTTTGATC ACCATATTTG 50081 .......... .......... .......... .......... .......... .......... 355 AGCTTTTAGT TACTTTATTT GTACCATCAT ACCTTTTTCA ACTAATTAAT GGGATCTTGA 50141 .......... .......... .......... .......... .......... .......... 355 GTATAATTCA CATAAGGGTA TAGTTTTTTC CTGTTTTGAA GTTCAAAGCA TGTTACATAT 50201 .......... .......... .......... .......... .......... .......... 355 TTTGTAAAAT GAGTCTTTTC CTTCTTTGAA TAAGGGTTGG CTTGTTTCTC TGATGCTAAA 50261 .......... .......... .......... .......... .......... .......... 355 TTCTGTGTTT TGATATCAAA CAGGAGGACA CATCAACCCA GCTGTGACCT TTGGTCTTTT 50321 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GAGGACA CATCAACCCA GCTGTGACCT TTGGTCTTTT 392 CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC AGTGCCTTGG 50381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC AGTGCCTTGG 452 TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA GGACCATACC AAAGACTTGG 50441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA GGACCATACC AAAGACTTGG 512 TGGTGGTGCT AATGTTGTTA ACCCTGGATA CAC 50474 |||||||||| |||||||||| |||||||||| ||| TGGTGGTGCT AATGTTGTTA ACCCTGGATA CAC 545 hqPGS_C08SLe0084H03.1+_SGN-E247338+ (49062 49416,50285 50474) ******************************************************************************** EST sequence 126 +strand 472 n (File: SGN-E307970+) 1 AAAAAAGTGA GTGAAGAAAA AAAAATGGCA GAGAACAAAG AAGAAGATGT TAATCTTGGA 61 GCAAACAAGT ACAGGGAAAC TCAGCCATTG GGGACAGCAG CTCAAACAGA CAAGGATTAC 121 AAAGAGCCAC CACCAGCTCC TCTGTTTGAA CCAGGGGAAT TGTCATCATG GTCTTTTTAC 181 AGAGCTGGAA TTGCTGAGTT TATGGCTACT TTCTTGTTTT TGTACATAAC AATCTTGACT 241 GTTATGGGGC TTAAAAGGTC TGATAGTTTG TGTTCTTCTG TGGGTGTTCA AGGAGTTGCT 301 TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTTTACTGTA CTGCTGGTAT CTCAGGAGGA 361 CACATTAATC CAGCTGTGAC ATTTGGTTTG TTCTTGGCAA GGAAGTTGTC ATTAACAAAG 421 GCAGTGTTTT ATATAGTGAT GCAGTGTCTT GGTGCTATCT GTGGTGCTGG TG Predicted gene structure (within gDNA segment 47625 to 51187): Exon 1 49062 49416 ( 355 n); cDNA 1 355 ( 355 n); score: 0.882 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0.88) Exon 2 50285 50401 ( 117 n); cDNA 356 472 ( 117 n); score: 0.855 MATCH C08SLe0084H03.1+ SGN-E307970+ 0.875 472 1.000 C PGS_C08SLe0084H03.1+_SGN-E307970+ (49062 49416,50285 50401) Alignment (genomic DNA sequence = upper lines): AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT TAAGCTTGGA 49121 |||| | | | | |||||||||| || ||||| | |||||||||| ||| |||||| AAAAAAGTGA GTGAAGAAAA AAAAATGGCA GAGAACAAAG AAGAAGATGT TAATCTTGGA 60 GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA CAAAGATTAC 49181 || ||||||| |||||||| ||| ||||| || ||||||| |||||||||| ||| |||||| GCAAACAAGT ACAGGGAAAC TCAGCCATTG GGGACAGCAG CTCAAACAGA CAAGGATTAC 120 AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG GTCCTTTTAC 49241 |||||||||| |||||||||| |||||||| |||||||| | |||||||||| ||| |||||| AAAGAGCCAC CACCAGCTCC TCTGTTTGAA CCAGGGGAAT TGTCATCATG GTCTTTTTAC 180 AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC AATCTTGACT 49301 || ||||| | |||| ||||| ||||| ||| |||||||| | |||| || || |||||||||| AGAGCTGGAA TTGCTGAGTT TATGGCTACT TTCTTGTTTT TGTACATAAC AATCTTGACT 240 GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA AGGGGTTGCT 49361 |||||||| | |||| || || ||||||||| |||||||| | ||||| |||| ||| |||||| GTTATGGGGC TTAAAAGGTC TGATAGTTTG TGTTCTTCTG TGGGTGTTCA AGGAGTTGCT 300 TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT CTCAGGTTGG 49421 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||| TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTTTACTGTA CTGCTGGTAT CTCAG..... 355 TTTCATTGCC CCCCTTTTCA TTCTTGATGC TAAAGATTGT AACTTTACTT GTTTTACTTA 49481 .......... .......... .......... .......... .......... .......... 355 AAGAGTGAGT TTGTGTTCAT TTATTGTCTA CTGATTGCTT TTGTCAACTG GTTTTGTGGA 49541 .......... .......... .......... .......... .......... .......... 355 TTGCTGAGTA TGTAGAAGGT AAAGATTTGT TTTATTTTTA CTGGTTTAGA GGTTTGAAAC 49601 .......... .......... .......... .......... .......... .......... 355 ATGTTAACTG GTTTGTTTTA TGTTTCTTGA TTTCTTTGAG TTGATTCCCT TCTTTTGCTT 49661 .......... .......... .......... .......... .......... .......... 355 AAGATAGTTG AGCTTGTGTT CACTTATTGT GTATATTTGT CGACTAATTT AATGGATTCT 49721 .......... .......... .......... .......... .......... .......... 355 TGATCTTGAG TATAGTCAAT TAAAGATTCA TTTTTCACTG TTTTTAAAGG TCCAAAACAT 49781 .......... .......... .......... .......... .......... .......... 355 GTTACTGGTT TGATTTCTGT GTCTGAGGTA CAAAAATGGA GTTTGGTGAA GCTTATTCCT 49841 .......... .......... .......... .......... .......... .......... 355 TTACCTCTAT ACTGTAAAAA TATGACTTCT CTTTATTTTC CTTCGTTCAC TAATTTTGTA 49901 .......... .......... .......... .......... .......... .......... 355 TCTCATACTT TTTACAACTA ATTTGATGGA TCCTTGAAGA TTCAACCTTT CTTTGTCTTG 49961 .......... .......... .......... .......... .......... .......... 355 GAGGTTCAAA ACATGTAAAT GGTTTATTTT CTGAATCTTG TTACTTTACC CTTTTTATAT 50021 .......... .......... .......... .......... .......... .......... 355 AGCAAGTGTA ACACTTTGTG GCTTATTTCT TTGTTTGCTT GCTTTTGATC ACCATATTTG 50081 .......... .......... .......... .......... .......... .......... 355 AGCTTTTAGT TACTTTATTT GTACCATCAT ACCTTTTTCA ACTAATTAAT GGGATCTTGA 50141 .......... .......... .......... .......... .......... .......... 355 GTATAATTCA CATAAGGGTA TAGTTTTTTC CTGTTTTGAA GTTCAAAGCA TGTTACATAT 50201 .......... .......... .......... .......... .......... .......... 355 TTTGTAAAAT GAGTCTTTTC CTTCTTTGAA TAAGGGTTGG CTTGTTTCTC TGATGCTAAA 50261 .......... .......... .......... .......... .......... .......... 355 TTCTGTGTTT TGATATCAAA CAGGAGGACA CATCAACCCA GCTGTGACCT TTGGTCTTTT 50321 ||||||| ||| || ||| |||||||| | ||||| | || .......... .......... ...GAGGACA CATTAATCCA GCTGTGACAT TTGGTTTGTT 392 CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC AGTGCCTTGG 50381 |||||||||| || ||||| | | || | ||| || || || || ||||||| |||| ||||| CTTGGCAAGG AAGTTGTCAT TAACAAAGGC AGTGTTTTAT ATAGTGATGC AGTGTCTTGG 452 TGCAATCTGT GGTGCTGGTG 50401 ||| |||||| |||||||||| TGCTATCTGT GGTGCTGGTG 472 hqPGS_C08SLe0084H03.1+_SGN-E307970+ (49062 49416,50285 50401) ******************************************************************************** EST sequence 62 +strand 573 n (File: SGN-E306233+) 1 AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG 61 CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA 121 AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA 181 GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG 241 TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGTGATGGC 301 CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT 361 GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTATTTTGG CACCACTTCC TATTGGATTC 421 GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC 481 AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA CCACTGGATC 541 TTCTGGGTTG GACCAATGAT TGGAGCTGCT CTT Predicted gene structure (within gDNA segment 48463 to 52520): Exon 1 49063 49353 ( 291 n); cDNA 1 291 ( 291 n); score: 1.000 Intron 1 49354 50478 (1125 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 50479 50580 ( 102 n); cDNA 292 393 ( 102 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 394 534 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 0) Exon 4 51872 51910 ( 39 n); cDNA 535 573 ( 39 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E306233+ 1.000 573 1.000 C PGS_C08SLe0084H03.1+_SGN-E306233+ (49063 49353,50479 50580,51611 51751,51872 51910) Alignment (genomic DNA sequence = upper lines): AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG 49122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG 60 CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA 49182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA 120 AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA 49242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA 180 GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG 49302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG 240 TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT 49362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA G......... 291 GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGTTGGT 49422 .......... .......... .......... .......... .......... .......... 291 TTCATTGCCC CCCTTTTCAT TCTTGATGCT AAAGATTGTA ACTTTACTTG TTTTACTTAA 49482 .......... .......... .......... .......... .......... .......... 291 AGAGTGAGTT TGTGTTCATT TATTGTCTAC TGATTGCTTT TGTCAACTGG TTTTGTGGAT 49542 .......... .......... .......... .......... .......... .......... 291 TGCTGAGTAT GTAGAAGGTA AAGATTTGTT TTATTTTTAC TGGTTTAGAG GTTTGAAACA 49602 .......... .......... .......... .......... .......... .......... 291 TGTTAACTGG TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT TGATTCCCTT CTTTTGCTTA 49662 .......... .......... .......... .......... .......... .......... 291 AGATAGTTGA GCTTGTGTTC ACTTATTGTG TATATTTGTC GACTAATTTA ATGGATTCTT 49722 .......... .......... .......... .......... .......... .......... 291 GATCTTGAGT ATAGTCAATT AAAGATTCAT TTTTCACTGT TTTTAAAGGT CCAAAACATG 49782 .......... .......... .......... .......... .......... .......... 291 TTACTGGTTT GATTTCTGTG TCTGAGGTAC AAAAATGGAG TTTGGTGAAG CTTATTCCTT 49842 .......... .......... .......... .......... .......... .......... 291 TACCTCTATA CTGTAAAAAT ATGACTTCTC TTTATTTTCC TTCGTTCACT AATTTTGTAT 49902 .......... .......... .......... .......... .......... .......... 291 CTCATACTTT TTACAACTAA TTTGATGGAT CCTTGAAGAT TCAACCTTTC TTTGTCTTGG 49962 .......... .......... .......... .......... .......... .......... 291 AGGTTCAAAA CATGTAAATG GTTTATTTTC TGAATCTTGT TACTTTACCC TTTTTATATA 50022 .......... .......... .......... .......... .......... .......... 291 GCAAGTGTAA CACTTTGTGG CTTATTTCTT TGTTTGCTTG CTTTTGATCA CCATATTTGA 50082 .......... .......... .......... .......... .......... .......... 291 GCTTTTAGTT ACTTTATTTG TACCATCATA CCTTTTTCAA CTAATTAATG GGATCTTGAG 50142 .......... .......... .......... .......... .......... .......... 291 TATAATTCAC ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT GTTACATATT 50202 .......... .......... .......... .......... .......... .......... 291 TTGTAAAATG AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT GATGCTAAAT 50262 .......... .......... .......... .......... .......... .......... 291 TCTGTGTTTT GATATCAAAC AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC 50322 .......... .......... .......... .......... .......... .......... 291 TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT 50382 .......... .......... .......... .......... .......... .......... 291 GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA AAGACTTGGT 50442 .......... .......... .......... .......... .......... .......... 291 GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG TGCTGAAATT 50502 |||| |||||||||| |||||||||| .......... .......... .......... ......GGTG ATGGCCTTGG TGCTGAAATT 315 ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA GAGAAATGCC 50562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA GAGAAATGCC 375 AGAGACTCAC ATGTTCCTGT AAGTGTTTTC CTCTTGTAGT TTTATTTCTT CTTTGTGATA 50622 |||||||||| |||||||| AGAGACTCAC ATGTTCCT.. .......... .......... .......... .......... 393 TCAAGTTTGC TTATCATGGA TATTTACATG TTAATTCTAA GCTAGAGTCT AACCAGAAAT 50682 .......... .......... .......... .......... .......... .......... 393 TTTGGAAGTA GTTTCTGAAA ATTTATCAAT GATATATGTG ACTTTACATT ACATAGTTTG 50742 .......... .......... .......... .......... .......... .......... 393 ACGATAAGTG AAGCGTGACA AGTAAAAATG ATCGTAGGGC CAACTTGTTA CCCTACATTG 50802 .......... .......... .......... .......... .......... .......... 393 TCTGATGAGA AGTGAAAAGT GACAAGTAAA AATGACCGTA GGGCCAACTT GTTACCATAC 50862 .......... .......... .......... .......... .......... .......... 393 ATAGTTTGAC GAGAAGTGAA AAGTGATTTT ATGACAAGTA AAAGTGAACG GAGGGTATTA 50922 .......... .......... .......... .......... .......... .......... 393 AACAACCAAC TTGCTATAAC ATGTTAAATT ACTCTAGTAG GGTAAAAGTT CATTGTACTG 50982 .......... .......... .......... .......... .......... .......... 393 TTTAATGTAT GTAAAAAGTT GAAATCTTGC AAGACAAGTG GGTCTTACTT TTTGGTAAGT 51042 .......... .......... .......... .......... .......... .......... 393 TAGGCAAAAA TATTGTTCAT GCTATAGCAT GTGGCATGTC TGGTTTTGTC AGCAAGTCCT 51102 .......... .......... .......... .......... .......... .......... 393 TTTAGTTGGT GTAGGGTTAT GTTGTGGGCC TAATTGAGTT AGGCTAAAGA TAGTGATGTT 51162 .......... .......... .......... .......... .......... .......... 393 CATGTGATAA GTTATTGTAA CTGTGGACTT TTTCTTGTCA TGGAGTGGCT CGCCACGTCA 51222 .......... .......... .......... .......... .......... .......... 393 CAGTGTTGTG GACCTTTAGG TCATCTCCGA TCCATAACAC CAACTTTTAT ACTAAAAACG 51282 .......... .......... .......... .......... .......... .......... 393 TGTATCAAAT GCGCTACACT GATTGTTCGA CATAATATTA TATAAAGAAT GATTTGGTAT 51342 .......... .......... .......... .......... .......... .......... 393 ATTAGGGAGT TTTCAAAAAC GTAGAATTTA TACGTTGAGT TAAGTTTCTT TGTATTTTGT 51402 .......... .......... .......... .......... .......... .......... 393 GGAGTGGAGA TGTAAATGAC ACCAAATTTC ATATTATTGT AGTGTCCGGA TAATGGTGTG 51462 .......... .......... .......... .......... .......... .......... 393 ATACTATTCA TCAACGCCTA TTTTATATAG AATGATCACA TAAGAACATT GTTGGCCAGT 51522 .......... .......... .......... .......... .......... .......... 393 CTTAGCTCAC CACAACTATC TTTTTGCGCT TATGTCTAAG AGAAATCCTT GGAAGACATT 51582 .......... .......... .......... .......... .......... .......... 393 TGTCTGATAA TCTTTATGTT TATTGTAGAT TTTGGCACCA CTTCCTATTG GATTCGCAGT 51642 || |||||||||| |||||||||| |||||||||| .......... .......... ........AT TTTGGCACCA CTTCCTATTG GATTCGCAGT 425 GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC CCGCCAGGAG 51702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC CCGCCAGGAG 485 TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACG TAAGAAAAAC 51762 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCAC. .......... 534 ATCTTTCATT CTTTTAAACT GACTCGAACA CCACAGTTAC TTGAACCAAA AAAAGGAGAG 51822 .......... .......... .......... .......... .......... .......... 534 CTTAATCTAA CAAAGGGGTT CTTGTTTGTT TTTTGTTGTT TTTGAACAGT GGATCTTCTG 51882 | |||||||||| .......... .......... .......... .......... .........T GGATCTTCTG 545 GGTTGGACCA ATGATTGGAG CTGCTCTT 51910 |||||||||| |||||||||| |||||||| GGTTGGACCA ATGATTGGAG CTGCTCTT 573 hqPGS_C08SLe0084H03.1+_SGN-E306233+ (49063 49353,50479 50580,51611 51751,51872 51910) ******************************************************************************** EST sequence 48 +strand 390 n (File: SGN-E341199+) 1 AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG 61 CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA 121 AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA 181 GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG 241 TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT 301 GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGAGGAC 361 ACATCAACCC AGCTGTGACC TTTGGTCTTT Predicted gene structure (within gDNA segment 48463 to 50930): Exon 1 49063 49416 ( 354 n); cDNA 1 354 ( 354 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 0) Exon 2 50285 50320 ( 36 n); cDNA 355 390 ( 36 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E341199+ 1.000 390 1.000 C PGS_C08SLe0084H03.1+_SGN-E341199+ (49063 49416,50285 50320) Alignment (genomic DNA sequence = upper lines): AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG 49122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTTCAA TCTTTGTGAA AAAATGGCAG AAAACAAGGA AGAAGATGTT AAGCTTGGAG 60 CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA 49182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC AAAGATTACA 120 AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA 49242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG TCCTTTTACA 180 GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG 49302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA ATCTTGACTG 240 TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT 49362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA GGGGTTGCTT 300 GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAGGTTGGT 49422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC TCAG...... 354 TTCATTGCCC CCCTTTTCAT TCTTGATGCT AAAGATTGTA ACTTTACTTG TTTTACTTAA 49482 .......... .......... .......... .......... .......... .......... 354 AGAGTGAGTT TGTGTTCATT TATTGTCTAC TGATTGCTTT TGTCAACTGG TTTTGTGGAT 49542 .......... .......... .......... .......... .......... .......... 354 TGCTGAGTAT GTAGAAGGTA AAGATTTGTT TTATTTTTAC TGGTTTAGAG GTTTGAAACA 49602 .......... .......... .......... .......... .......... .......... 354 TGTTAACTGG TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT TGATTCCCTT CTTTTGCTTA 49662 .......... .......... .......... .......... .......... .......... 354 AGATAGTTGA GCTTGTGTTC ACTTATTGTG TATATTTGTC GACTAATTTA ATGGATTCTT 49722 .......... .......... .......... .......... .......... .......... 354 GATCTTGAGT ATAGTCAATT AAAGATTCAT TTTTCACTGT TTTTAAAGGT CCAAAACATG 49782 .......... .......... .......... .......... .......... .......... 354 TTACTGGTTT GATTTCTGTG TCTGAGGTAC AAAAATGGAG TTTGGTGAAG CTTATTCCTT 49842 .......... .......... .......... .......... .......... .......... 354 TACCTCTATA CTGTAAAAAT ATGACTTCTC TTTATTTTCC TTCGTTCACT AATTTTGTAT 49902 .......... .......... .......... .......... .......... .......... 354 CTCATACTTT TTACAACTAA TTTGATGGAT CCTTGAAGAT TCAACCTTTC TTTGTCTTGG 49962 .......... .......... .......... .......... .......... .......... 354 AGGTTCAAAA CATGTAAATG GTTTATTTTC TGAATCTTGT TACTTTACCC TTTTTATATA 50022 .......... .......... .......... .......... .......... .......... 354 GCAAGTGTAA CACTTTGTGG CTTATTTCTT TGTTTGCTTG CTTTTGATCA CCATATTTGA 50082 .......... .......... .......... .......... .......... .......... 354 GCTTTTAGTT ACTTTATTTG TACCATCATA CCTTTTTCAA CTAATTAATG GGATCTTGAG 50142 .......... .......... .......... .......... .......... .......... 354 TATAATTCAC ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT GTTACATATT 50202 .......... .......... .......... .......... .......... .......... 354 TTGTAAAATG AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT GATGCTAAAT 50262 .......... .......... .......... .......... .......... .......... 354 TCTGTGTTTT GATATCAAAC AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTT 50320 |||||||| |||||||||| |||||||||| |||||||| .......... .......... ..GAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTT 390 hqPGS_C08SLe0084H03.1+_SGN-E341199+ (49063 49416,50285 50320) ******************************************************************************** EST sequence 101 +strand 615 n (File: SGN-E332861+) 1 AAGCTTCAAT CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC 61 TAACAAGTTT AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA 121 AGAGCCACCA CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG 181 GGCTGGTATT GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT 241 TATGGGTCTT AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG 301 GGCTTTTGGT GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGAGGACA 361 CATCAACCCA GCTGTGACCT TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC 421 TGTTTTCTAC ATGGTGATGC AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGTGAAGGG 481 CTTCATGGTA GGACCATACC AAAGACTTGG TGGTGGTGCT AATGTTGTTA ACCCTGGATA 541 CACCAAGGGT GATGGCCTTG GTGCTGAAAT TATTGGCACC TTTGTCCTTG TTTACACTGT 601 TTTTTCAGCC ACTGA Predicted gene structure (within gDNA segment 48464 to 51156): Exon 1 49064 49416 ( 353 n); cDNA 1 353 ( 353 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50546 ( 262 n); cDNA 354 615 ( 262 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E332861+ 1.000 615 1.000 C PGS_C08SLe0084H03.1+_SGN-E332861+ (49064 49416,50285 50546) Alignment (genomic DNA sequence = upper lines): AAGCTTCAAT CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC 49123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTCAAT CTTTGTGAAA AAATGGCAGA AAACAAGGAA GAAGATGTTA AGCTTGGAGC 60 TAACAAGTTT AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA 49183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACAAGTTT AGGGAAACTC AACCATTAGG TACAGCAGCT CAAACAGACA AAGATTACAA 120 AGAGCCACCA CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG 49243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCCACCA CCAGCTCCAT TGTTTGAACC AGGGGAGTTG TCATCATGGT CCTTTTACAG 180 GGCTGGTATT GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT 49303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGGTATT GCAGAGTTCA TGGCAACTTT CTTGTTCTTG TATATCACAA TCTTGACTGT 240 TATGGGTCTT AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG 49363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGGTCTT AAGAGATCTG ATAGTTTATG TTCTTCAGTG GGTATTCAAG GGGTTGCTTG 300 GGCTTTTGGT GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAGGTTGGTT 49423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| GGCTTTTGGT GGTATGATCT TTGCTTTGGT CTACTGTACT GCTGGTATCT CAG....... 353 TCATTGCCCC CCTTTTCATT CTTGATGCTA AAGATTGTAA CTTTACTTGT TTTACTTAAA 49483 .......... .......... .......... .......... .......... .......... 353 GAGTGAGTTT GTGTTCATTT ATTGTCTACT GATTGCTTTT GTCAACTGGT TTTGTGGATT 49543 .......... .......... .......... .......... .......... .......... 353 GCTGAGTATG TAGAAGGTAA AGATTTGTTT TATTTTTACT GGTTTAGAGG TTTGAAACAT 49603 .......... .......... .......... .......... .......... .......... 353 GTTAACTGGT TTGTTTTATG TTTCTTGATT TCTTTGAGTT GATTCCCTTC TTTTGCTTAA 49663 .......... .......... .......... .......... .......... .......... 353 GATAGTTGAG CTTGTGTTCA CTTATTGTGT ATATTTGTCG ACTAATTTAA TGGATTCTTG 49723 .......... .......... .......... .......... .......... .......... 353 ATCTTGAGTA TAGTCAATTA AAGATTCATT TTTCACTGTT TTTAAAGGTC CAAAACATGT 49783 .......... .......... .......... .......... .......... .......... 353 TACTGGTTTG ATTTCTGTGT CTGAGGTACA AAAATGGAGT TTGGTGAAGC TTATTCCTTT 49843 .......... .......... .......... .......... .......... .......... 353 ACCTCTATAC TGTAAAAATA TGACTTCTCT TTATTTTCCT TCGTTCACTA ATTTTGTATC 49903 .......... .......... .......... .......... .......... .......... 353 TCATACTTTT TACAACTAAT TTGATGGATC CTTGAAGATT CAACCTTTCT TTGTCTTGGA 49963 .......... .......... .......... .......... .......... .......... 353 GGTTCAAAAC ATGTAAATGG TTTATTTTCT GAATCTTGTT ACTTTACCCT TTTTATATAG 50023 .......... .......... .......... .......... .......... .......... 353 CAAGTGTAAC ACTTTGTGGC TTATTTCTTT GTTTGCTTGC TTTTGATCAC CATATTTGAG 50083 .......... .......... .......... .......... .......... .......... 353 CTTTTAGTTA CTTTATTTGT ACCATCATAC CTTTTTCAAC TAATTAATGG GATCTTGAGT 50143 .......... .......... .......... .......... .......... .......... 353 ATAATTCACA TAAGGGTATA GTTTTTTCCT GTTTTGAAGT TCAAAGCATG TTACATATTT 50203 .......... .......... .......... .......... .......... .......... 353 TGTAAAATGA GTCTTTTCCT TCTTTGAATA AGGGTTGGCT TGTTTCTCTG ATGCTAAATT 50263 .......... .......... .......... .......... .......... .......... 353 CTGTGTTTTG ATATCAAACA GGAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT 50323 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT 392 TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG 50383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG 452 CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG ACCATACCAA AGACTTGGTG 50443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG ACCATACCAA AGACTTGGTG 512 GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT GCTGAAATTA 50503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT GCTGAAATTA 572 TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGA 50546 |||||||||| |||||||||| |||||||||| |||||||||| ||| TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGA 615 hqPGS_C08SLe0084H03.1+_SGN-E332861+ (49064 49416,50285 50546) ******************************************************************************** EST sequence 135 +strand 618 n (File: SGN-E260288+) 1 AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG AAGATGTTAA GCTTGGAGCT 61 AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC AAACAGACAA AGATTACAAA 121 GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT CATCATGGTC CTTTTACAGG 181 GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT ATATCACAAT CTTGACTGTT 241 ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG GTATTCAAGG GGTTGCTTGG 301 GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGAGGACAC 361 ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT 421 GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC 481 TTCATGGTAG GACCATACCA AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC 541 ACCAAGGGTG ATGGCCTTGG TGCTGAAATA TTGGCACCTT TGTCCTTGTT TACACTGTTT 601 TTTCAGCCAC TGATGCCA Predicted gene structure (within gDNA segment 48465 to 51161): Exon 1 49065 49416 ( 352 n); cDNA 1 352 ( 352 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50551 ( 267 n); cDNA 353 618 ( 266 n); score: 0.996 MATCH C08SLe0084H03.1+ SGN-E260288+ 0.998 619 1.002 C PGS_C08SLe0084H03.1+_SGN-E260288+ (49065 49416,50285 50551) Alignment (genomic DNA sequence = upper lines): AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG AAGATGTTAA GCTTGGAGCT 49124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG AAGATGTTAA GCTTGGAGCT 60 AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC AAACAGACAA AGATTACAAA 49184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC AAACAGACAA AGATTACAAA 120 GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT CATCATGGTC CTTTTACAGG 49244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT CATCATGGTC CTTTTACAGG 180 GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT ATATCACAAT CTTGACTGTT 49304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT ATATCACAAT CTTGACTGTT 240 ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG GTATTCAAGG GGTTGCTTGG 49364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG GTATTCAAGG GGTTGCTTGG 300 GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGTTGGTTT 49424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG CTGGTATCTC AG........ 352 CATTGCCCCC CTTTTCATTC TTGATGCTAA AGATTGTAAC TTTACTTGTT TTACTTAAAG 49484 .......... .......... .......... .......... .......... .......... 352 AGTGAGTTTG TGTTCATTTA TTGTCTACTG ATTGCTTTTG TCAACTGGTT TTGTGGATTG 49544 .......... .......... .......... .......... .......... .......... 352 CTGAGTATGT AGAAGGTAAA GATTTGTTTT ATTTTTACTG GTTTAGAGGT TTGAAACATG 49604 .......... .......... .......... .......... .......... .......... 352 TTAACTGGTT TGTTTTATGT TTCTTGATTT CTTTGAGTTG ATTCCCTTCT TTTGCTTAAG 49664 .......... .......... .......... .......... .......... .......... 352 ATAGTTGAGC TTGTGTTCAC TTATTGTGTA TATTTGTCGA CTAATTTAAT GGATTCTTGA 49724 .......... .......... .......... .......... .......... .......... 352 TCTTGAGTAT AGTCAATTAA AGATTCATTT TTCACTGTTT TTAAAGGTCC AAAACATGTT 49784 .......... .......... .......... .......... .......... .......... 352 ACTGGTTTGA TTTCTGTGTC TGAGGTACAA AAATGGAGTT TGGTGAAGCT TATTCCTTTA 49844 .......... .......... .......... .......... .......... .......... 352 CCTCTATACT GTAAAAATAT GACTTCTCTT TATTTTCCTT CGTTCACTAA TTTTGTATCT 49904 .......... .......... .......... .......... .......... .......... 352 CATACTTTTT ACAACTAATT TGATGGATCC TTGAAGATTC AACCTTTCTT TGTCTTGGAG 49964 .......... .......... .......... .......... .......... .......... 352 GTTCAAAACA TGTAAATGGT TTATTTTCTG AATCTTGTTA CTTTACCCTT TTTATATAGC 50024 .......... .......... .......... .......... .......... .......... 352 AAGTGTAACA CTTTGTGGCT TATTTCTTTG TTTGCTTGCT TTTGATCACC ATATTTGAGC 50084 .......... .......... .......... .......... .......... .......... 352 TTTTAGTTAC TTTATTTGTA CCATCATACC TTTTTCAACT AATTAATGGG ATCTTGAGTA 50144 .......... .......... .......... .......... .......... .......... 352 TAATTCACAT AAGGGTATAG TTTTTTCCTG TTTTGAAGTT CAAAGCATGT TACATATTTT 50204 .......... .......... .......... .......... .......... .......... 352 GTAAAATGAG TCTTTTCCTT CTTTGAATAA GGGTTGGCTT GTTTCTCTGA TGCTAAATTC 50264 .......... .......... .......... .......... .......... .......... 352 TGTGTTTTGA TATCAAACAG GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT 50324 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT 392 GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC 50384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC 452 AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 50444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 512 TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT 50504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAA-TAT 571 TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT GATGCCA 50551 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT GATGCCA 618 hqPGS_C08SLe0084H03.1+_SGN-E260288+ (49065 49416,50285 50551) ******************************************************************************** EST sequence 129 +strand 605 n (File: SGN-E310188+) 1 AGAAATCTTA GTGAGTGAGT GAGTGAAGAA ATGGCAGAAA ACAAAGAAGA AGATGTTAAT 61 CTTGGAGCCA ACAAATTCAG AGAACCACAA CCCTTAGGGA CATCAGCACA AACAGATAAA 121 GATTACAAAG AACCACCACC AGCTCCTTTA TATGAACCTG GTGAACTATC ATCATGGAGT 181 TTTTACAGAG CTGGAATTGC AGAGTTCATG GCAACTTTCT TGTTTTTATA CATCACAATC 241 TTGACTGTAA TGGGTCTTAA AAGATCTGAT AGTTTGTGTT CTTCTGTGGG TATTCAAGGT 301 GTTGCTTGGG CTTTTGGTGG TATGATTTTT GCCCTTGTCT ATTGTACTGC TGGTATCTCA 361 GGAGGGCACA TTAACCCAGC TGTGACATTT GGTCTGTTCT TAGCAAGGAA ACTTTCCTTA 421 ACCAGGGCAG TGTTCTACAT GGTGATGCAG TGTCTCGGTG CCATCTGTGG TGCTGGTGTT 481 GTCAAGGGAT TCATGCAAGG TCCGTATCAG AGACTTGGTG GTGGTGCCAA TGTGGTTCAA 541 CCCGGATACA CGAAAGGTGA TGGTCTTGGT GCTGAGATTA TTGGGACCTT TGTTCTTGTC 601 TACAC Predicted gene structure (within gDNA segment 46701 to 52245): Exon 1 49065 49416 ( 352 n); cDNA 10 361 ( 352 n); score: 0.855 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.90), Pa: 0.992 (s: 0.90) Exon 2 50285 50528 ( 244 n); cDNA 362 605 ( 244 n); score: 0.865 MATCH C08SLe0084H03.1+ SGN-E310188+ 0.859 596 0.985 C PGS_C08SLe0084H03.1+_SGN-E310188+ (49065 49416,50285 50528) Alignment (genomic DNA sequence = upper lines): AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG AAGATGTTAA GCTTGGAGCT 49124 || | ||||| | |||||||||| ||||| |||| |||||||||| |||||||| AGTGAGTGAG TGAGTGAAGA AATGGCAGAA AACAAAGAAG AAGATGTTAA TCTTGGAGCC 69 AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC AAACAGACAA AGATTACAAA 49184 ||||| || | | ||| | || ||| ||||| ||| |||| | ||||||| || |||||||||| AACAAATTCA GAGAACCACA ACCCTTAGGG ACATCAGCAC AAACAGATAA AGATTACAAA 129 GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT CATCATGGTC CTTTTACAGG 49244 || ||||||| ||||||| || | |||||| || || | | |||||||| |||||||| GAACCACCAC CAGCTCCTTT ATATGAACCT GGTGAACTAT CATCATGGAG TTTTTACAGA 189 GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT ATATCACAAT CTTGACTGTT 49304 ||||| |||| |||||||||| |||||||||| ||||| || | | |||||||| ||||||||| GCTGGAATTG CAGAGTTCAT GGCAACTTTC TTGTTTTTAT ACATCACAAT CTTGACTGTA 249 ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG GTATTCAAGG GGTTGCTTGG 49364 |||||||||| | |||||||| |||||| ||| ||||| |||| |||||||||| ||||||||| ATGGGTCTTA AAAGATCTGA TAGTTTGTGT TCTTCTGTGG GTATTCAAGG TGTTGCTTGG 309 GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGTTGGTTT 49424 |||||||||| ||||||| || ||| | ||| || ||||||| |||||||||| || GCTTTTGGTG GTATGATTTT TGCCCTTGTC TATTGTACTG CTGGTATCTC AG........ 361 CATTGCCCCC CTTTTCATTC TTGATGCTAA AGATTGTAAC TTTACTTGTT TTACTTAAAG 49484 .......... .......... .......... .......... .......... .......... 361 AGTGAGTTTG TGTTCATTTA TTGTCTACTG ATTGCTTTTG TCAACTGGTT TTGTGGATTG 49544 .......... .......... .......... .......... .......... .......... 361 CTGAGTATGT AGAAGGTAAA GATTTGTTTT ATTTTTACTG GTTTAGAGGT TTGAAACATG 49604 .......... .......... .......... .......... .......... .......... 361 TTAACTGGTT TGTTTTATGT TTCTTGATTT CTTTGAGTTG ATTCCCTTCT TTTGCTTAAG 49664 .......... .......... .......... .......... .......... .......... 361 ATAGTTGAGC TTGTGTTCAC TTATTGTGTA TATTTGTCGA CTAATTTAAT GGATTCTTGA 49724 .......... .......... .......... .......... .......... .......... 361 TCTTGAGTAT AGTCAATTAA AGATTCATTT TTCACTGTTT TTAAAGGTCC AAAACATGTT 49784 .......... .......... .......... .......... .......... .......... 361 ACTGGTTTGA TTTCTGTGTC TGAGGTACAA AAATGGAGTT TGGTGAAGCT TATTCCTTTA 49844 .......... .......... .......... .......... .......... .......... 361 CCTCTATACT GTAAAAATAT GACTTCTCTT TATTTTCCTT CGTTCACTAA TTTTGTATCT 49904 .......... .......... .......... .......... .......... .......... 361 CATACTTTTT ACAACTAATT TGATGGATCC TTGAAGATTC AACCTTTCTT TGTCTTGGAG 49964 .......... .......... .......... .......... .......... .......... 361 GTTCAAAACA TGTAAATGGT TTATTTTCTG AATCTTGTTA CTTTACCCTT TTTATATAGC 50024 .......... .......... .......... .......... .......... .......... 361 AAGTGTAACA CTTTGTGGCT TATTTCTTTG TTTGCTTGCT TTTGATCACC ATATTTGAGC 50084 .......... .......... .......... .......... .......... .......... 361 TTTTAGTTAC TTTATTTGTA CCATCATACC TTTTTCAACT AATTAATGGG ATCTTGAGTA 50144 .......... .......... .......... .......... .......... .......... 361 TAATTCACAT AAGGGTATAG TTTTTTCCTG TTTTGAAGTT CAAAGCATGT TACATATTTT 50204 .......... .......... .......... .......... .......... .......... 361 GTAAAATGAG TCTTTTCCTT CTTTGAATAA GGGTTGGCTT GTTTCTCTGA TGCTAAATTC 50264 .......... .......... .......... .......... .......... .......... 361 TGTGTTTTGA TATCAAACAG GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT 50324 |||| ||||| ||||||||| ||||| |||| |||| ||||| .......... .......... GAGGGCACAT TAACCCAGCT GTGACATTTG GTCTGTTCTT 401 GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC 50384 ||||||||| | ||||| | ||||||| || ||||||||| |||||||||| | || ||||| AGCAAGGAAA CTTTCCTTAA CCAGGGCAGT GTTCTACATG GTGATGCAGT GTCTCGGTGC 461 AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 50444 ||||||||| |||||||||| | ||||| || |||| ||| || || || | |||||||||| CATCTGTGGT GCTGGTGTTG TCAAGGGATT CATGCAAGGT CCGTATCAGA GACTTGGTGG 521 TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT 50504 |||||| ||| || ||| | | | |||||||| || |||||| || ||||||| |||| ||||| TGGTGCCAAT GTGGTTCAAC CCGGATACAC GAAAGGTGAT GGTCTTGGTG CTGAGATTAT 581 TGGCACCTTT GTCCTTGTTT ACAC 50528 ||| |||||| || ||||| | |||| TGGGACCTTT GTTCTTGTCT ACAC 605 hqPGS_C08SLe0084H03.1+_SGN-E310188+ (49065 49416,50285 50528) ******************************************************************************** EST sequence 120 +strand 611 n (File: SGN-E333839+) 1 TCAATCTTTG TGAAAAAATG GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA 61 AGTTTAGGGA AACTCAACCA TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC 121 CACCACCAGC TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG 181 GTATTGCAGA GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG 241 GTCTTAAGAG ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT 301 TTGGTGGTAT GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAGGA GGACACATCA 361 ACCCAGCTGT GACCTTTGGT CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT 421 TCTACATGGT GATGCAGTGC CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA 481 TGGTAAGACC ATACCAAAGA CTTGGTGGTG GTGCTAATGT TGTTAACCCT GGATACACCA 541 AGGGTGATGG CCTTGGTGCT GAAATTATTG GCACCTTTGT CCTTGGTTAC ACTGGTTTTT 601 CAGCCACTGA T Predicted gene structure (within gDNA segment 48469 to 51157): Exon 1 49069 49416 ( 348 n); cDNA 1 348 ( 348 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50547 ( 263 n); cDNA 349 611 ( 263 n); score: 0.989 MATCH C08SLe0084H03.1+ SGN-E333839+ 0.995 611 1.000 C PGS_C08SLe0084H03.1+_SGN-E333839+ (49069 49416,50285 50547) Alignment (genomic DNA sequence = upper lines): TCAATCTTTG TGAAAAAATG GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA 49128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATCTTTG TGAAAAAATG GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA 60 AGTTTAGGGA AACTCAACCA TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC 49188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTAGGGA AACTCAACCA TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC 120 CACCACCAGC TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG 49248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCACCAGC TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG 180 GTATTGCAGA GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG 49308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTGCAGA GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG 240 GTCTTAAGAG ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT 49368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTAAGAG ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT 300 TTGGTGGTAT GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAGGT TGGTTTCATT 49428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTGGTGGTAT GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAG.. .......... 348 GCCCCCCTTT TCATTCTTGA TGCTAAAGAT TGTAACTTTA CTTGTTTTAC TTAAAGAGTG 49488 .......... .......... .......... .......... .......... .......... 348 AGTTTGTGTT CATTTATTGT CTACTGATTG CTTTTGTCAA CTGGTTTTGT GGATTGCTGA 49548 .......... .......... .......... .......... .......... .......... 348 GTATGTAGAA GGTAAAGATT TGTTTTATTT TTACTGGTTT AGAGGTTTGA AACATGTTAA 49608 .......... .......... .......... .......... .......... .......... 348 CTGGTTTGTT TTATGTTTCT TGATTTCTTT GAGTTGATTC CCTTCTTTTG CTTAAGATAG 49668 .......... .......... .......... .......... .......... .......... 348 TTGAGCTTGT GTTCACTTAT TGTGTATATT TGTCGACTAA TTTAATGGAT TCTTGATCTT 49728 .......... .......... .......... .......... .......... .......... 348 GAGTATAGTC AATTAAAGAT TCATTTTTCA CTGTTTTTAA AGGTCCAAAA CATGTTACTG 49788 .......... .......... .......... .......... .......... .......... 348 GTTTGATTTC TGTGTCTGAG GTACAAAAAT GGAGTTTGGT GAAGCTTATT CCTTTACCTC 49848 .......... .......... .......... .......... .......... .......... 348 TATACTGTAA AAATATGACT TCTCTTTATT TTCCTTCGTT CACTAATTTT GTATCTCATA 49908 .......... .......... .......... .......... .......... .......... 348 CTTTTTACAA CTAATTTGAT GGATCCTTGA AGATTCAACC TTTCTTTGTC TTGGAGGTTC 49968 .......... .......... .......... .......... .......... .......... 348 AAAACATGTA AATGGTTTAT TTTCTGAATC TTGTTACTTT ACCCTTTTTA TATAGCAAGT 50028 .......... .......... .......... .......... .......... .......... 348 GTAACACTTT GTGGCTTATT TCTTTGTTTG CTTGCTTTTG ATCACCATAT TTGAGCTTTT 50088 .......... .......... .......... .......... .......... .......... 348 AGTTACTTTA TTTGTACCAT CATACCTTTT TCAACTAATT AATGGGATCT TGAGTATAAT 50148 .......... .......... .......... .......... .......... .......... 348 TCACATAAGG GTATAGTTTT TTCCTGTTTT GAAGTTCAAA GCATGTTACA TATTTTGTAA 50208 .......... .......... .......... .......... .......... .......... 348 AATGAGTCTT TTCCTTCTTT GAATAAGGGT TGGCTTGTTT CTCTGATGCT AAATTCTGTG 50268 .......... .......... .......... .......... .......... .......... 348 TTTTGATATC AAACAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA 50328 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA 392 AGGAAATTGT CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC 50388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAATTGT CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC 452 TGTGGTGCTG GTGTTGTGAA GGGCTTCATG GTAGGACCAT ACCAAAGACT TGGTGGTGGT 50448 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TGTGGTGCTG GTGTTGTGAA GGGCTTCATG GTAAGACCAT ACCAAAGACT TGGTGGTGGT 512 GCTAATGTTG TTAACCCTGG ATACACCAAG GGTGATGGCC TTGGTGCTGA AATTATTGGC 50508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAATGTTG TTAACCCTGG ATACACCAAG GGTGATGGCC TTGGTGCTGA AATTATTGGC 572 ACCTTTGTCC TTGTTTACAC TGTTTTTTCA GCCACTGAT 50547 |||||||||| ||| |||||| || ||||||| ||||||||| ACCTTTGTCC TTGGTTACAC TGGTTTTTCA GCCACTGAT 611 hqPGS_C08SLe0084H03.1+_SGN-E333839+ (49069 49416,50285 50547) ******************************************************************************** EST sequence 70 +strand 600 n (File: SGN-E307054+) 1 GAAGAAATGG CTGAAAACAA AGAAGAAGAT GTTAATCTTG GAGCCAACAA ATTCAGAGAA 61 CCACAACCCT TAGGGACATC AGCACAAACA GATAAAGATT ACAAAGAACC ACCACCAGCT 121 CCTTTATATG AACCTGGTGA ACTATCATCA TGGAGTTTTT ACAGAGCTGG AATTGCAGAG 181 TTCATGGCAA CTTTCTTGTT TTTATACATC ACAATCTTGA CTGTAATGGG TCTTAAAAGA 241 TCTGATAGTT TGTGTTCTTC TGTGGGTATT CAAGGTGTTG CTTGGGCTTT TGGTGGTATG 301 ATTTTTGCCC TTGTCTATTG TACTGCTGGT ATCTCAGGAG GGCACATTAA CCCAGCTGTG 361 ACATTTGGTC TGTTCTTAGC AAGGAAACTT TCCTTAACCA GGGCAGTGTT CTACATGGTG 421 ATGCAGTGTC TCGGTGCCAT CTGTGGTGCT GGTGTTGTCA AGGGATTCAT GCAAGGTCCG 481 TATCAGAGAC TTGGTGGTGG TGCCAATGTG GTTCAACCCG GATACACGAA AGGTGATGGT 541 CTTGGTGCTG AGATTATTGG GACCTTTGTT CTTGTCTACA CTGGTTTCTC CGCCACTGAT Predicted gene structure (within gDNA segment 46941 to 52435): Exon 1 49080 49416 ( 337 n); cDNA 1 337 ( 337 n); score: 0.875 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.90), Pa: 0.992 (s: 0.90) Exon 2 50285 50547 ( 263 n); cDNA 338 600 ( 263 n); score: 0.863 MATCH C08SLe0084H03.1+ SGN-E307054+ 0.870 600 1.000 C PGS_C08SLe0084H03.1+_SGN-E307054+ (49080 49416,50285 50547) Alignment (genomic DNA sequence = upper lines): GAAAAAATGG CAGAAAACAA GGAAGAAGAT GTTAAGCTTG GAGCTAACAA GTTTAGGGAA 49139 ||| |||||| | |||||||| ||||||||| ||||| |||| |||| ||||| || || ||| GAAGAAATGG CTGAAAACAA AGAAGAAGAT GTTAATCTTG GAGCCAACAA ATTCAGAGAA 60 ACTCAACCAT TAGGTACAGC AGCTCAAACA GACAAAGATT ACAAAGAGCC ACCACCAGCT 49199 | ||||| | |||| ||| | ||| |||||| || ||||||| ||||||| || |||||||||| CCACAACCCT TAGGGACATC AGCACAAACA GATAAAGATT ACAAAGAACC ACCACCAGCT 120 CCATTGTTTG AACCAGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG 49259 || || | || |||| || || | |||||| ||| |||| |||| ||||| ||||||||| CCTTTATATG AACCTGGTGA ACTATCATCA TGGAGTTTTT ACAGAGCTGG AATTGCAGAG 180 TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA 49319 |||||||||| |||||||||| || || ||| |||||||||| |||| ||||| |||||| ||| TTCATGGCAA CTTTCTTGTT TTTATACATC ACAATCTTGA CTGTAATGGG TCTTAAAAGA 240 TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG 49379 |||||||||| | |||||||| ||||||||| ||||| |||| |||||||||| |||||||||| TCTGATAGTT TGTGTTCTTC TGTGGGTATT CAAGGTGTTG CTTGGGCTTT TGGTGGTATG 300 ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGTT GGTTTCATTG CCCCCCTTTT 49439 || ||||| | ||||| || |||||||||| ||||||| ATTTTTGCCC TTGTCTATTG TACTGCTGGT ATCTCAG... .......... .......... 337 CATTCTTGAT GCTAAAGATT GTAACTTTAC TTGTTTTACT TAAAGAGTGA GTTTGTGTTC 49499 .......... .......... .......... .......... .......... .......... 337 ATTTATTGTC TACTGATTGC TTTTGTCAAC TGGTTTTGTG GATTGCTGAG TATGTAGAAG 49559 .......... .......... .......... .......... .......... .......... 337 GTAAAGATTT GTTTTATTTT TACTGGTTTA GAGGTTTGAA ACATGTTAAC TGGTTTGTTT 49619 .......... .......... .......... .......... .......... .......... 337 TATGTTTCTT GATTTCTTTG AGTTGATTCC CTTCTTTTGC TTAAGATAGT TGAGCTTGTG 49679 .......... .......... .......... .......... .......... .......... 337 TTCACTTATT GTGTATATTT GTCGACTAAT TTAATGGATT CTTGATCTTG AGTATAGTCA 49739 .......... .......... .......... .......... .......... .......... 337 ATTAAAGATT CATTTTTCAC TGTTTTTAAA GGTCCAAAAC ATGTTACTGG TTTGATTTCT 49799 .......... .......... .......... .......... .......... .......... 337 GTGTCTGAGG TACAAAAATG GAGTTTGGTG AAGCTTATTC CTTTACCTCT ATACTGTAAA 49859 .......... .......... .......... .......... .......... .......... 337 AATATGACTT CTCTTTATTT TCCTTCGTTC ACTAATTTTG TATCTCATAC TTTTTACAAC 49919 .......... .......... .......... .......... .......... .......... 337 TAATTTGATG GATCCTTGAA GATTCAACCT TTCTTTGTCT TGGAGGTTCA AAACATGTAA 49979 .......... .......... .......... .......... .......... .......... 337 ATGGTTTATT TTCTGAATCT TGTTACTTTA CCCTTTTTAT ATAGCAAGTG TAACACTTTG 50039 .......... .......... .......... .......... .......... .......... 337 TGGCTTATTT CTTTGTTTGC TTGCTTTTGA TCACCATATT TGAGCTTTTA GTTACTTTAT 50099 .......... .......... .......... .......... .......... .......... 337 TTGTACCATC ATACCTTTTT CAACTAATTA ATGGGATCTT GAGTATAATT CACATAAGGG 50159 .......... .......... .......... .......... .......... .......... 337 TATAGTTTTT TCCTGTTTTG AAGTTCAAAG CATGTTACAT ATTTTGTAAA ATGAGTCTTT 50219 .......... .......... .......... .......... .......... .......... 337 TCCTTCTTTG AATAAGGGTT GGCTTGTTTC TCTGATGCTA AATTCTGTGT TTTGATATCA 50279 .......... .......... .......... .......... .......... .......... 337 AACAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC 50339 |||| ||||| |||| |||||||||| |||||||| ||||| |||| ||||| | || .....GAGGG CACATTAACC CAGCTGTGAC ATTTGGTCTG TTCTTAGCAA GGAAACTTTC 392 CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG 50399 ||| |||||| || || |||| |||||||||| |||||| || ||||| |||| |||||||||| CTTAACCAGG GCAGTGTTCT ACATGGTGAT GCAGTGTCTC GGTGCCATCT GTGGTGCTGG 452 TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT GGTGGTGGTG CTAATGTTGT 50459 |||||| ||| || |||||| ||| || || || |||||| |||||||||| | ||||| || TGTTGTCAAG GGATTCATGC AAGGTCCGTA TCAGAGACTT GGTGGTGGTG CCAATGTGGT 512 TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT 50519 | | || ||| ||||| || | ||||||| || ||||||||| |||||||| | ||||||| || TCAACCCGGA TACACGAAAG GTGATGGTCT TGGTGCTGAG ATTATTGGGA CCTTTGTTCT 572 TGTTTACACT GTTTTTTCAG CCACTGAT 50547 ||| |||||| | ||| || | |||||||| TGTCTACACT GGTTTCTCCG CCACTGAT 600 hqPGS_C08SLe0084H03.1+_SGN-E307054+ (49080 49416,50285 50547) ******************************************************************************** EST sequence 233 -strand 830 n (File: SGN-E544308-) 1 AAAAAATGGC AGACAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 61 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 121 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 181 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 241 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGTGATG GCCTTGGTGC TGAAATTATT 301 GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAGA 361 GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT CTTGGTTCAT 421 TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG CCAGGAGTCT TGGAGCTGCT 481 ATCATCTACA ACGACGAGCA TGCATGGAAT GACCACTGGA TCTTCTGGGT TGGACCAATG 541 ATTGGAGCTG CTCTTGCTGC TATTTACCAC CAAATAATTA TCAGAGCTAT GCCATTCCAC 601 AGGTCTTAAG TTATCTGTCT TTAAACAATG GGATTCTCAA AGACTCAACA GTGTACTTTT 661 GTCTTCTTTT TTTGGGGGGT TGAATGTTCA AGTTTCTCCT TCAATGTATT TGTAATGTGG 721 ATCTGTTCCT TCTGTTAAGA TGTTCTATTA TGTGTGTAAA TTATCAGGTT ATGATAATGT 781 AATGTACCTT ATCAATGAAG GTTCTTTATT TTTATCTTGA AAAAAAAAAA Predicted gene structure (within gDNA segment 48345 to 52893): Exon 1 49081 49353 ( 273 n); cDNA 1 273 ( 273 n); score: 0.996 Intron 1 49354 50478 (1125 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 50479 50580 ( 102 n); cDNA 274 375 ( 102 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 376 516 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51872 52177 ( 306 n); cDNA 517 822 ( 306 n); score: 0.993 MATCH C08SLe0084H03.1+ SGN-E544308- 0.996 822 0.990 C PGS_C08SLe0084H03.1+_SGN-E544308- (49081 49353,50479 50580,51611 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 49140 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAATGGC AGACAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 60 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 49200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 120 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 180 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 240 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||||| |||||||||| ||| CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAG....... .......... .......... 273 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC 49440 .......... .......... .......... .......... .......... .......... 273 ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA 49500 .......... .......... .......... .......... .......... .......... 273 TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG 49560 .......... .......... .......... .......... .......... .......... 273 TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT 49620 .......... .......... .......... .......... .......... .......... 273 ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT 49680 .......... .......... .......... .......... .......... .......... 273 TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA 49740 .......... .......... .......... .......... .......... .......... 273 TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG 49800 .......... .......... .......... .......... .......... .......... 273 TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA 49860 .......... .......... .......... .......... .......... .......... 273 ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT 49920 .......... .......... .......... .......... .......... .......... 273 AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA 49980 .......... .......... .......... .......... .......... .......... 273 TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT 50040 .......... .......... .......... .......... .......... .......... 273 GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT 50100 .......... .......... .......... .......... .......... .......... 273 TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT 50160 .......... .......... .......... .......... .......... .......... 273 ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT 50220 .......... .......... .......... .......... .......... .......... 273 CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA 50280 .......... .......... .......... .......... .......... .......... 273 ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 50340 .......... .......... .......... .......... .......... .......... 273 TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT 50400 .......... .......... .......... .......... .......... .......... 273 GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT 50460 .......... .......... .......... .......... .......... .......... 273 AACCCTGGAT ACACCAAGGG TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT 50520 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GG TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT 315 GTTTACACTG TTTTTTCAGC CACTGATGCC AAGAGAAATG CCAGAGACTC ACATGTTCCT 50580 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTACACTG TTTTTTCAGC CACTGATGCC AAGAGAAATG CCAGAGACTC ACATGTTCCT 375 GTAAGTGTTT TCCTCTTGTA GTTTTATTTC TTCTTTGTGA TATCAAGTTT GCTTATCATG 50640 .......... .......... .......... .......... .......... .......... 375 GATATTTACA TGTTAATTCT AAGCTAGAGT CTAACCAGAA ATTTTGGAAG TAGTTTCTGA 50700 .......... .......... .......... .......... .......... .......... 375 AAATTTATCA ATGATATATG TGACTTTACA TTACATAGTT TGACGATAAG TGAAGCGTGA 50760 .......... .......... .......... .......... .......... .......... 375 CAAGTAAAAA TGATCGTAGG GCCAACTTGT TACCCTACAT TGTCTGATGA GAAGTGAAAA 50820 .......... .......... .......... .......... .......... .......... 375 GTGACAAGTA AAAATGACCG TAGGGCCAAC TTGTTACCAT ACATAGTTTG ACGAGAAGTG 50880 .......... .......... .......... .......... .......... .......... 375 AAAAGTGATT TTATGACAAG TAAAAGTGAA CGGAGGGTAT TAAACAACCA ACTTGCTATA 50940 .......... .......... .......... .......... .......... .......... 375 ACATGTTAAA TTACTCTAGT AGGGTAAAAG TTCATTGTAC TGTTTAATGT ATGTAAAAAG 51000 .......... .......... .......... .......... .......... .......... 375 TTGAAATCTT GCAAGACAAG TGGGTCTTAC TTTTTGGTAA GTTAGGCAAA AATATTGTTC 51060 .......... .......... .......... .......... .......... .......... 375 ATGCTATAGC ATGTGGCATG TCTGGTTTTG TCAGCAAGTC CTTTTAGTTG GTGTAGGGTT 51120 .......... .......... .......... .......... .......... .......... 375 ATGTTGTGGG CCTAATTGAG TTAGGCTAAA GATAGTGATG TTCATGTGAT AAGTTATTGT 51180 .......... .......... .......... .......... .......... .......... 375 AACTGTGGAC TTTTTCTTGT CATGGAGTGG CTCGCCACGT CACAGTGTTG TGGACCTTTA 51240 .......... .......... .......... .......... .......... .......... 375 GGTCATCTCC GATCCATAAC ACCAACTTTT ATACTAAAAA CGTGTATCAA ATGCGCTACA 51300 .......... .......... .......... .......... .......... .......... 375 CTGATTGTTC GACATAATAT TATATAAAGA ATGATTTGGT ATATTAGGGA GTTTTCAAAA 51360 .......... .......... .......... .......... .......... .......... 375 ACGTAGAATT TATACGTTGA GTTAAGTTTC TTTGTATTTT GTGGAGTGGA GATGTAAATG 51420 .......... .......... .......... .......... .......... .......... 375 ACACCAAATT TCATATTATT GTAGTGTCCG GATAATGGTG TGATACTATT CATCAACGCC 51480 .......... .......... .......... .......... .......... .......... 375 TATTTTATAT AGAATGATCA CATAAGAACA TTGTTGGCCA GTCTTAGCTC ACCACAACTA 51540 .......... .......... .......... .......... .......... .......... 375 TCTTTTTGCG CTTATGTCTA AGAGAAATCC TTGGAAGACA TTTGTCTGAT AATCTTTATG 51600 .......... .......... .......... .......... .......... .......... 375 TTTATTGTAG ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC 51660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC 425 CACCATCCCC ATCACCGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT 51720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCATCCCC ATCACCGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT 485 CTACAACGAC GAGCATGCAT GGAATGACCA CGTAAGAAAA ACATCTTTCA TTCTTTTAAA 51780 |||||||||| |||||||||| |||||||||| | CTACAACGAC GAGCATGCAT GGAATGACCA C......... .......... .......... 516 CTGACTCGAA CACCACAGTT ACTTGAACCA AAAAAAGGAG AGCTTAATCT AACAAAGGGG 51840 .......... .......... .......... .......... .......... .......... 516 TTCTTGTTTG TTTTTTGTTG TTTTTGAACA GTGGATCTTC TGGGTTGGAC CAATGATTGG 51900 ||||||||| |||||||||| |||||||||| .......... .......... .......... .TGGATCTTC TGGGTTGGAC CAATGATTGG 545 AGCTGCTCTT GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC 51960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCTCTT GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC 605 TTAAGTTATC TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT 52020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGTTATC TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT 665 CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG 52080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG 725 TTCCTTCTGT TAAGATGTTC TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT 52140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTCTGT TAAGATGTTC TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT 785 ACCTTATCAA TGAAGGTTCT TTATTTTTAT CTTTGAA 52177 |||||||||| |||||||||| |||||||||| ||| || ACCTTATCAA TGAAGGTTCT TTATTTTTAT CTTGAAA 822 hqPGS_C08SLe0084H03.1+_SGN-E544308- (49081 49353,50479 50580,51611 51751,51872 52177) ******************************************************************************** EST sequence 90 +strand 718 n (File: SGN-E343051+) 1 TGAAGAAAAA AAAAATGGCA GAGAACAAAG AAGAAGATGT TAATCTTGGA GCAAACAAGT 61 ACAGGGAAAC TCAGCCATTG GGGACAGCAG CTCAAACAGA CAAGGATTAC AAAGAGCCAC 121 CACCAGCTCC TCTGTTTGAA CCAGGGGAAT TGTCATCATG GTCTTTTTAC AGAGCTGGAA 181 TTGCTGAGTT TATGGCTACT TTCTTGTTTT TGTACATAAC AATCTTGACT GTTATGGGGC 241 TTAAAAGGTC TGATAGTTTG TGTTCTTCTG TGGGTGTTCA AGGAGTTGCT TGGGCTTTTG 301 GTGGTATGAT CTTTGCTTTG GTTTACTGTA CTGCTGGTAT CTCAGGAGGA CACATTAATC 361 CAGCTGTGAC ATTTGGTTTG TTCTTGGCAA GGAAGTTGTC ATTAACAAGG GCAGTGTTTT 421 ATATAGTGAT GCAGTGTCTT GGTGCTATCT GTGGTGCTGG TGTTGTGAAG GGTTTTATGG 481 TTGGACCCTA TGAGAGACTT GGTGGTGGTG CTAATGTTGT TAATCCTGGT ACACCAAAGG 541 TGATGGACTT GGTGCTGAGA TTATTGGTAC TTTTGTCCTT GTTTACACTG TTTTCTCTGC 601 CACTGATGCC AAAAGAAGTG CTAGAGACTC ACATGTTCCT ATTTTGGCAC CTCTTCCAAT 661 TGGATTCGCG GTGTTCTGGG TTCATTTGGC TACCATTCCA ATCACCGGAA CTGGTATC Predicted gene structure (within gDNA segment 47725 to 53747): Exon 1 49081 49416 ( 336 n); cDNA 10 345 ( 336 n); score: 0.911 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0.88) Exon 2 50285 50580 ( 296 n); cDNA 346 640 ( 295 n); score: 0.882 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 0.90), Pa: 0.980 (s: 0.92) Exon 3 51611 51688 ( 78 n); cDNA 641 718 ( 78 n); score: 0.897 MATCH C08SLe0084H03.1+ SGN-E343051+ 0.897 710 0.989 C PGS_C08SLe0084H03.1+_SGN-E343051+ (49081 49416,50285 50580,51611 51688) Alignment (genomic DNA sequence = upper lines): AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 49140 |||||||||| ||| ||||| |||||||||| |||| ||||| ||| |||||| | ||||||| AAAAAATGGC AGAGAACAAA GAAGAAGATG TTAATCTTGG AGCAAACAAG TACAGGGAAA 69 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 49200 |||| ||||| || |||||| |||||||||| |||| ||||| |||||||||| |||||||||| CTCAGCCATT GGGGACAGCA GCTCAAACAG ACAAGGATTA CAAAGAGCCA CCACCAGCTC 129 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 | ||||||| ||||||||| |||||||||| |||| ||||| ||| ||||| ||||| |||| CTCTGTTTGA ACCAGGGGAA TTGTCATCAT GGTCTTTTTA CAGAGCTGGA ATTGCTGAGT 189 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 | ||||| || ||||||||| ||||| || | |||||||||| ||||||||| ||||| || | TTATGGCTAC TTTCTTGTTT TTGTACATAA CAATCTTGAC TGTTATGGGG CTTAAAAGGT 249 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| CTGATAGTTT GTGTTCTTCT GTGGGTGTTC AAGGAGTTGC TTGGGCTTTT GGTGGTATGA 309 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC 49440 |||||||||| ||| |||||| |||||||||| |||||| TCTTTGCTTT GGTTTACTGT ACTGCTGGTA TCTCAG.... .......... .......... 345 ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA 49500 .......... .......... .......... .......... .......... .......... 345 TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG 49560 .......... .......... .......... .......... .......... .......... 345 TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT 49620 .......... .......... .......... .......... .......... .......... 345 ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT 49680 .......... .......... .......... .......... .......... .......... 345 TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA 49740 .......... .......... .......... .......... .......... .......... 345 TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG 49800 .......... .......... .......... .......... .......... .......... 345 TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA 49860 .......... .......... .......... .......... .......... .......... 345 ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT 49920 .......... .......... .......... .......... .......... .......... 345 AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA 49980 .......... .......... .......... .......... .......... .......... 345 TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT 50040 .......... .......... .......... .......... .......... .......... 345 GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT 50100 .......... .......... .......... .......... .......... .......... 345 TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT 50160 .......... .......... .......... .......... .......... .......... 345 ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT 50220 .......... .......... .......... .......... .......... .......... 345 CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA 50280 .......... .......... .......... .......... .......... .......... 345 ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 50340 |||||| |||| || || ||||||||| |||||| | | |||||||||| ||| ||||| ....GAGGAC ACATTAATCC AGCTGTGACA TTTGGTTTGT TCTTGGCAAG GAAGTTGTCA 401 TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT 50400 || || |||| | || || || || |||||| ||||| |||| |||| ||||| |||||||||| TTAACAAGGG CAGTGTTTTA TATAGTGATG CAGTGTCTTG GTGCTATCTG TGGTGCTGGT 461 GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT 50460 |||||||||| | || ||||| ||||| || | ||||||| |||||||||| |||||||||| GTTGTGAAGG GTTTTATGGT TGGACCCTAT GAGAGACTTG GTGGTGGTGC TAATGTTGTT 521 AACCCTGGAT ACACCAAGGG TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT 50520 || ||||| | ||||||| || |||||| ||| |||||||| | ||||||| || ||||||||| AATCCTGG-T ACACCAAAGG TGATGGACTT GGTGCTGAGA TTATTGGTAC TTTTGTCCTT 580 GTTTACACTG TTTTTTCAGC CACTGATGCC AAGAGAAATG CCAGAGACTC ACATGTTCCT 50580 |||||||||| |||| || || |||||||||| || |||| || | |||||||| |||||||||| GTTTACACTG TTTTCTCTGC CACTGATGCC AAAAGAAGTG CTAGAGACTC ACATGTTCCT 640 GTAAGTGTTT TCCTCTTGTA GTTTTATTTC TTCTTTGTGA TATCAAGTTT GCTTATCATG 50640 .......... .......... .......... .......... .......... .......... 640 GATATTTACA TGTTAATTCT AAGCTAGAGT CTAACCAGAA ATTTTGGAAG TAGTTTCTGA 50700 .......... .......... .......... .......... .......... .......... 640 AAATTTATCA ATGATATATG TGACTTTACA TTACATAGTT TGACGATAAG TGAAGCGTGA 50760 .......... .......... .......... .......... .......... .......... 640 CAAGTAAAAA TGATCGTAGG GCCAACTTGT TACCCTACAT TGTCTGATGA GAAGTGAAAA 50820 .......... .......... .......... .......... .......... .......... 640 GTGACAAGTA AAAATGACCG TAGGGCCAAC TTGTTACCAT ACATAGTTTG ACGAGAAGTG 50880 .......... .......... .......... .......... .......... .......... 640 AAAAGTGATT TTATGACAAG TAAAAGTGAA CGGAGGGTAT TAAACAACCA ACTTGCTATA 50940 .......... .......... .......... .......... .......... .......... 640 ACATGTTAAA TTACTCTAGT AGGGTAAAAG TTCATTGTAC TGTTTAATGT ATGTAAAAAG 51000 .......... .......... .......... .......... .......... .......... 640 TTGAAATCTT GCAAGACAAG TGGGTCTTAC TTTTTGGTAA GTTAGGCAAA AATATTGTTC 51060 .......... .......... .......... .......... .......... .......... 640 ATGCTATAGC ATGTGGCATG TCTGGTTTTG TCAGCAAGTC CTTTTAGTTG GTGTAGGGTT 51120 .......... .......... .......... .......... .......... .......... 640 ATGTTGTGGG CCTAATTGAG TTAGGCTAAA GATAGTGATG TTCATGTGAT AAGTTATTGT 51180 .......... .......... .......... .......... .......... .......... 640 AACTGTGGAC TTTTTCTTGT CATGGAGTGG CTCGCCACGT CACAGTGTTG TGGACCTTTA 51240 .......... .......... .......... .......... .......... .......... 640 GGTCATCTCC GATCCATAAC ACCAACTTTT ATACTAAAAA CGTGTATCAA ATGCGCTACA 51300 .......... .......... .......... .......... .......... .......... 640 CTGATTGTTC GACATAATAT TATATAAAGA ATGATTTGGT ATATTAGGGA GTTTTCAAAA 51360 .......... .......... .......... .......... .......... .......... 640 ACGTAGAATT TATACGTTGA GTTAAGTTTC TTTGTATTTT GTGGAGTGGA GATGTAAATG 51420 .......... .......... .......... .......... .......... .......... 640 ACACCAAATT TCATATTATT GTAGTGTCCG GATAATGGTG TGATACTATT CATCAACGCC 51480 .......... .......... .......... .......... .......... .......... 640 TATTTTATAT AGAATGATCA CATAAGAACA TTGTTGGCCA GTCTTAGCTC ACCACAACTA 51540 .......... .......... .......... .......... .......... .......... 640 TCTTTTTGCG CTTATGTCTA AGAGAAATCC TTGGAAGACA TTTGTCTGAT AATCTTTATG 51600 .......... .......... .......... .......... .......... .......... 640 TTTATTGTAG ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC 51660 |||||||||| | ||||| || ||||||||| ||||||| || |||||||||| .......... ATTTTGGCAC CTCTTCCAAT TGGATTCGCG GTGTTCTGGG TTCATTTGGC 690 CACCATCCCC ATCACCGGAA CTGGCATC 51688 ||||| || |||||||||| |||| ||| TACCATTCCA ATCACCGGAA CTGGTATC 718 hqPGS_C08SLe0084H03.1+_SGN-E343051+ (49081 49416,50285 50580,51611 51688) ******************************************************************************** EST sequence 39 +strand 733 n (File: SGN-E539526+) 1 CAATAATATA CACACAGAGA AAAAAGTGAG TGAAGAAAAA AAAAATGGCA GAGAACAAAG 61 AAGAAGATGT TAATCTTGGA GCAAACAAGT ACAGGGAAAC TCAGCCATTG GGGACAGCAG 121 CTCAAACAGA CAAGGATTAC AAAGAGCCAC CACCAGCTCC TCTGTTTGAA CCAGGGGAAT 181 TGTCATCATG GTCTTTTTAC AGAGCTGGAA TTGCTGAGTT TATGGCTACT TTCTTGTTTT 241 TGTACATAAC AATCTTGACT GTTATGGGGC TTAAAAGGTC TGATAGTTTG TGTTCTTCTG 301 TGGGTGTTCA AGGAGTTGCT TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTTTACTGTA 361 CTGCTGGTAT CTCAGGAGGA CACATTAATC CAGCTGTGAC ATTTGGTTTG TTCTTGGCAA 421 GGAAGTTGTC ATTAACAAGG GCAGTGTTTT ATATAGTGAT GCAGTGTCTT GGTGCTATCT 481 GTGGTGCTGG TGTTGTGAAG GGTTTTATGG TTGGACCCTA TGAGAGACTT GGTGGTGGTG 541 CTAATGTTGT TAATCCTGGT TACACCAAAG GTGATGGACT TGGTGCTGAG ATTATTGGTA 601 CTTTTGTCCT TGTTTACACT GTTTTCTCTG CCACTGATGC CAAAAGAAGT GCTAGAGACT 661 CACATGTTCC TATTTTGGCA CCTCTTTCAA TTGGATTCGC GGTGTTCTTG GTTCATTTGG 721 CTACCATTCC AAT Predicted gene structure (within gDNA segment 47425 to 53597): Exon 1 49081 49416 ( 336 n); cDNA 40 375 ( 336 n); score: 0.911 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0.88) Exon 2 50285 50580 ( 296 n); cDNA 376 671 ( 296 n); score: 0.882 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 0.90), Pa: 0.980 (s: 0.92) Exon 3 51611 51672 ( 62 n); cDNA 672 733 ( 62 n); score: 0.887 MATCH C08SLe0084H03.1+ SGN-E539526+ 0.896 694 0.947 C PGS_C08SLe0084H03.1+_SGN-E539526+ (49081 49416,50285 50580,51611 51672) Alignment (genomic DNA sequence = upper lines): AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 49140 |||||||||| ||| ||||| |||||||||| |||| ||||| ||| |||||| | ||||||| AAAAAATGGC AGAGAACAAA GAAGAAGATG TTAATCTTGG AGCAAACAAG TACAGGGAAA 99 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 49200 |||| ||||| || |||||| |||||||||| |||| ||||| |||||||||| |||||||||| CTCAGCCATT GGGGACAGCA GCTCAAACAG ACAAGGATTA CAAAGAGCCA CCACCAGCTC 159 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 | ||||||| ||||||||| |||||||||| |||| ||||| ||| ||||| ||||| |||| CTCTGTTTGA ACCAGGGGAA TTGTCATCAT GGTCTTTTTA CAGAGCTGGA ATTGCTGAGT 219 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 | ||||| || ||||||||| ||||| || | |||||||||| ||||||||| ||||| || | TTATGGCTAC TTTCTTGTTT TTGTACATAA CAATCTTGAC TGTTATGGGG CTTAAAAGGT 279 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| CTGATAGTTT GTGTTCTTCT GTGGGTGTTC AAGGAGTTGC TTGGGCTTTT GGTGGTATGA 339 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC 49440 |||||||||| ||| |||||| |||||||||| |||||| TCTTTGCTTT GGTTTACTGT ACTGCTGGTA TCTCAG.... .......... .......... 375 ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA 49500 .......... .......... .......... .......... .......... .......... 375 TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG 49560 .......... .......... .......... .......... .......... .......... 375 TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT 49620 .......... .......... .......... .......... .......... .......... 375 ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT 49680 .......... .......... .......... .......... .......... .......... 375 TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA 49740 .......... .......... .......... .......... .......... .......... 375 TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG 49800 .......... .......... .......... .......... .......... .......... 375 TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA 49860 .......... .......... .......... .......... .......... .......... 375 ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT 49920 .......... .......... .......... .......... .......... .......... 375 AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA 49980 .......... .......... .......... .......... .......... .......... 375 TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT 50040 .......... .......... .......... .......... .......... .......... 375 GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT 50100 .......... .......... .......... .......... .......... .......... 375 TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT 50160 .......... .......... .......... .......... .......... .......... 375 ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT 50220 .......... .......... .......... .......... .......... .......... 375 CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA 50280 .......... .......... .......... .......... .......... .......... 375 ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 50340 |||||| |||| || || ||||||||| |||||| | | |||||||||| ||| ||||| ....GAGGAC ACATTAATCC AGCTGTGACA TTTGGTTTGT TCTTGGCAAG GAAGTTGTCA 431 TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT 50400 || || |||| | || || || || |||||| ||||| |||| |||| ||||| |||||||||| TTAACAAGGG CAGTGTTTTA TATAGTGATG CAGTGTCTTG GTGCTATCTG TGGTGCTGGT 491 GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT 50460 |||||||||| | || ||||| ||||| || | ||||||| |||||||||| |||||||||| GTTGTGAAGG GTTTTATGGT TGGACCCTAT GAGAGACTTG GTGGTGGTGC TAATGTTGTT 551 AACCCTGGAT ACACCAAGGG TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT 50520 || ||||| | ||||||| || |||||| ||| |||||||| | ||||||| || ||||||||| AATCCTGGTT ACACCAAAGG TGATGGACTT GGTGCTGAGA TTATTGGTAC TTTTGTCCTT 611 GTTTACACTG TTTTTTCAGC CACTGATGCC AAGAGAAATG CCAGAGACTC ACATGTTCCT 50580 |||||||||| |||| || || |||||||||| || |||| || | |||||||| |||||||||| GTTTACACTG TTTTCTCTGC CACTGATGCC AAAAGAAGTG CTAGAGACTC ACATGTTCCT 671 GTAAGTGTTT TCCTCTTGTA GTTTTATTTC TTCTTTGTGA TATCAAGTTT GCTTATCATG 50640 .......... .......... .......... .......... .......... .......... 671 GATATTTACA TGTTAATTCT AAGCTAGAGT CTAACCAGAA ATTTTGGAAG TAGTTTCTGA 50700 .......... .......... .......... .......... .......... .......... 671 AAATTTATCA ATGATATATG TGACTTTACA TTACATAGTT TGACGATAAG TGAAGCGTGA 50760 .......... .......... .......... .......... .......... .......... 671 CAAGTAAAAA TGATCGTAGG GCCAACTTGT TACCCTACAT TGTCTGATGA GAAGTGAAAA 50820 .......... .......... .......... .......... .......... .......... 671 GTGACAAGTA AAAATGACCG TAGGGCCAAC TTGTTACCAT ACATAGTTTG ACGAGAAGTG 50880 .......... .......... .......... .......... .......... .......... 671 AAAAGTGATT TTATGACAAG TAAAAGTGAA CGGAGGGTAT TAAACAACCA ACTTGCTATA 50940 .......... .......... .......... .......... .......... .......... 671 ACATGTTAAA TTACTCTAGT AGGGTAAAAG TTCATTGTAC TGTTTAATGT ATGTAAAAAG 51000 .......... .......... .......... .......... .......... .......... 671 TTGAAATCTT GCAAGACAAG TGGGTCTTAC TTTTTGGTAA GTTAGGCAAA AATATTGTTC 51060 .......... .......... .......... .......... .......... .......... 671 ATGCTATAGC ATGTGGCATG TCTGGTTTTG TCAGCAAGTC CTTTTAGTTG GTGTAGGGTT 51120 .......... .......... .......... .......... .......... .......... 671 ATGTTGTGGG CCTAATTGAG TTAGGCTAAA GATAGTGATG TTCATGTGAT AAGTTATTGT 51180 .......... .......... .......... .......... .......... .......... 671 AACTGTGGAC TTTTTCTTGT CATGGAGTGG CTCGCCACGT CACAGTGTTG TGGACCTTTA 51240 .......... .......... .......... .......... .......... .......... 671 GGTCATCTCC GATCCATAAC ACCAACTTTT ATACTAAAAA CGTGTATCAA ATGCGCTACA 51300 .......... .......... .......... .......... .......... .......... 671 CTGATTGTTC GACATAATAT TATATAAAGA ATGATTTGGT ATATTAGGGA GTTTTCAAAA 51360 .......... .......... .......... .......... .......... .......... 671 ACGTAGAATT TATACGTTGA GTTAAGTTTC TTTGTATTTT GTGGAGTGGA GATGTAAATG 51420 .......... .......... .......... .......... .......... .......... 671 ACACCAAATT TCATATTATT GTAGTGTCCG GATAATGGTG TGATACTATT CATCAACGCC 51480 .......... .......... .......... .......... .......... .......... 671 TATTTTATAT AGAATGATCA CATAAGAACA TTGTTGGCCA GTCTTAGCTC ACCACAACTA 51540 .......... .......... .......... .......... .......... .......... 671 TCTTTTTGCG CTTATGTCTA AGAGAAATCC TTGGAAGACA TTTGTCTGAT AATCTTTATG 51600 .......... .......... .......... .......... .......... .......... 671 TTTATTGTAG ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC 51660 |||||||||| | ||| | || ||||||||| |||||||||| |||||||||| .......... ATTTTGGCAC CTCTTTCAAT TGGATTCGCG GTGTTCTTGG TTCATTTGGC 721 CACCATCCCC AT 51672 ||||| || || TACCATTCCA AT 733 hqPGS_C08SLe0084H03.1+_SGN-E539526+ (49081 49416,50285 50580,51611 51672) ******************************************************************************** EST sequence 37 +strand 564 n (File: SGN-E303459+) 1 ATAATATACA CACAGAGAAA AAAGTGAGTG AAGAAAAAAA AAATGGCAGA GAACAAAGAA 61 GAAGATGTTA ATCTTGGAGC AAACAAGTAC AGGGAAACTC AGCCATTGGG GACAGCAGCT 121 CAAACAGACA AGGATTACAA AGAGCCACCA CCAGCTCCTC TGTTTGAACC AGGGGAATTG 181 TCATCATGGT CTTTTTACAG AGCTGGAATT GCTGAGTTTA TGGCTACTTT CTTGTTTTTG 241 TACATAACAA TCTTGACTGT TATGGGGCTT AAAAGGTCTG ATAGTTTGTG TTCTTCTGTG 301 GGTGTTCAAG GAGTTGCTTG GGCTTTTGGT GGTATGATCT TTGCTTTGGT TTACTGTACT 361 GCTGGTATCT CAGGAGGACA CATTAATCCA GCTGTGACAT TTGGTTTGTT CTTGGCAAGG 421 AAGTTGTCAT TAACAAGGGC AGTGTTTTAT ATAGTGATGC AGTGTCTTGG TGCTATCTGT 481 GGTGCTGGTG TTGTGAAGGG TTTTATGGTT GGACCCTATG AGAGACTTGG TGGTGGTGCT 541 AATGTTGTTA ATCCTGGTTA CACC Predicted gene structure (within gDNA segment 47445 to 51927): Exon 1 49081 49416 ( 336 n); cDNA 38 373 ( 336 n); score: 0.911 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0.88) Exon 2 50285 50475 ( 191 n); cDNA 374 564 ( 191 n); score: 0.869 MATCH C08SLe0084H03.1+ SGN-E303459+ 0.896 527 0.934 C PGS_C08SLe0084H03.1+_SGN-E303459+ (49081 49416,50285 50475) Alignment (genomic DNA sequence = upper lines): AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 49140 |||||||||| ||| ||||| |||||||||| |||| ||||| ||| |||||| | ||||||| AAAAAATGGC AGAGAACAAA GAAGAAGATG TTAATCTTGG AGCAAACAAG TACAGGGAAA 97 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 49200 |||| ||||| || |||||| |||||||||| |||| ||||| |||||||||| |||||||||| CTCAGCCATT GGGGACAGCA GCTCAAACAG ACAAGGATTA CAAAGAGCCA CCACCAGCTC 157 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 | ||||||| ||||||||| |||||||||| |||| ||||| ||| ||||| ||||| |||| CTCTGTTTGA ACCAGGGGAA TTGTCATCAT GGTCTTTTTA CAGAGCTGGA ATTGCTGAGT 217 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 | ||||| || ||||||||| ||||| || | |||||||||| ||||||||| ||||| || | TTATGGCTAC TTTCTTGTTT TTGTACATAA CAATCTTGAC TGTTATGGGG CTTAAAAGGT 277 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| CTGATAGTTT GTGTTCTTCT GTGGGTGTTC AAGGAGTTGC TTGGGCTTTT GGTGGTATGA 337 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC 49440 |||||||||| ||| |||||| |||||||||| |||||| TCTTTGCTTT GGTTTACTGT ACTGCTGGTA TCTCAG.... .......... .......... 373 ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA 49500 .......... .......... .......... .......... .......... .......... 373 TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG 49560 .......... .......... .......... .......... .......... .......... 373 TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT 49620 .......... .......... .......... .......... .......... .......... 373 ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT 49680 .......... .......... .......... .......... .......... .......... 373 TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA 49740 .......... .......... .......... .......... .......... .......... 373 TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG 49800 .......... .......... .......... .......... .......... .......... 373 TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA 49860 .......... .......... .......... .......... .......... .......... 373 ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT 49920 .......... .......... .......... .......... .......... .......... 373 AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA 49980 .......... .......... .......... .......... .......... .......... 373 TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT 50040 .......... .......... .......... .......... .......... .......... 373 GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT 50100 .......... .......... .......... .......... .......... .......... 373 TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT 50160 .......... .......... .......... .......... .......... .......... 373 ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT 50220 .......... .......... .......... .......... .......... .......... 373 CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA 50280 .......... .......... .......... .......... .......... .......... 373 ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 50340 |||||| |||| || || ||||||||| |||||| | | |||||||||| ||| ||||| ....GAGGAC ACATTAATCC AGCTGTGACA TTTGGTTTGT TCTTGGCAAG GAAGTTGTCA 429 TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT 50400 || || |||| | || || || || |||||| ||||| |||| |||| ||||| |||||||||| TTAACAAGGG CAGTGTTTTA TATAGTGATG CAGTGTCTTG GTGCTATCTG TGGTGCTGGT 489 GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT 50460 |||||||||| | || ||||| ||||| || | ||||||| |||||||||| |||||||||| GTTGTGAAGG GTTTTATGGT TGGACCCTAT GAGAGACTTG GTGGTGGTGC TAATGTTGTT 549 AACCCTGGAT ACACC 50475 || ||||| | ||||| AATCCTGGTT ACACC 564 hqPGS_C08SLe0084H03.1+_SGN-E303459+ (49081 49416,50285 50475) ******************************************************************************** EST sequence 124 +strand 457 n (File: SGN-E288467+) 1 AAAGTGAGTG AAGAAAAAAA AAATGGCAGA GAACAAAGAA GAAGATGTTA ATCTTGGAGC 61 AAACAAGTAC AGGGAAACTC AGCCATTGGG GACAGCAGCT CAAACAGACA AGGATTACAA 121 AGAGCCACCA CCAGCTCCTC TGTTTGAACC AGGGGAATTG TCATCATGGT CTTTTTACAG 181 AGCTGGAATT GCTGAGTTTA TGGCTACTTT CTTGTTTTTG TACATAACAA TCTTGACTGT 241 TATGGGGCTT AAAAGGTCTG ATAGTTTGTG TTCTTCTGTG GGTGTTCAAG GAGTTGCTTG 301 GGCTTATGGC GGTATGAACT TTGCTTTGGT TTACTGTACT GCTGGTATCT CAGGAGGACA 361 CATTAATCCA GCTGTGACAT TTGGTTTGTT CTTGGCAAGG AAGTTGTCAT TAACAAGGGC 421 AGTGTTTTAT ATAGTGATGC AATGTCTTGG TGCTATC Predicted gene structure (within gDNA segment 47645 to 52839): Exon 1 49081 49416 ( 336 n); cDNA 18 353 ( 336 n); score: 0.902 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.92), Pa: 0.992 (s: 0.88) Exon 2 50285 50388 ( 104 n); cDNA 354 457 ( 104 n); score: 0.837 MATCH C08SLe0084H03.1+ SGN-E288467+ 0.886 440 0.963 C PGS_C08SLe0084H03.1+_SGN-E288467+ (49081 49416,50285 50388) Alignment (genomic DNA sequence = upper lines): AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 49140 |||||||||| ||| ||||| |||||||||| |||| ||||| ||| |||||| | ||||||| AAAAAATGGC AGAGAACAAA GAAGAAGATG TTAATCTTGG AGCAAACAAG TACAGGGAAA 77 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 49200 |||| ||||| || |||||| |||||||||| |||| ||||| |||||||||| |||||||||| CTCAGCCATT GGGGACAGCA GCTCAAACAG ACAAGGATTA CAAAGAGCCA CCACCAGCTC 137 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 | ||||||| ||||||||| |||||||||| |||| ||||| ||| ||||| ||||| |||| CTCTGTTTGA ACCAGGGGAA TTGTCATCAT GGTCTTTTTA CAGAGCTGGA ATTGCTGAGT 197 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 | ||||| || ||||||||| ||||| || | |||||||||| ||||||||| ||||| || | TTATGGCTAC TTTCTTGTTT TTGTACATAA CAATCTTGAC TGTTATGGGG CTTAAAAGGT 257 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||| |||||| ||| |||| ||||| |||||||| | || ||||||| CTGATAGTTT GTGTTCTTCT GTGGGTGTTC AAGGAGTTGC TTGGGCTTAT GGCGGTATGA 317 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC 49440 ||||||||| ||| |||||| |||||||||| |||||| ACTTTGCTTT GGTTTACTGT ACTGCTGGTA TCTCAG.... .......... .......... 353 ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA 49500 .......... .......... .......... .......... .......... .......... 353 TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG 49560 .......... .......... .......... .......... .......... .......... 353 TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT 49620 .......... .......... .......... .......... .......... .......... 353 ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT 49680 .......... .......... .......... .......... .......... .......... 353 TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA 49740 .......... .......... .......... .......... .......... .......... 353 TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG 49800 .......... .......... .......... .......... .......... .......... 353 TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA 49860 .......... .......... .......... .......... .......... .......... 353 ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT 49920 .......... .......... .......... .......... .......... .......... 353 AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA 49980 .......... .......... .......... .......... .......... .......... 353 TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT 50040 .......... .......... .......... .......... .......... .......... 353 GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT 50100 .......... .......... .......... .......... .......... .......... 353 TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT 50160 .......... .......... .......... .......... .......... .......... 353 ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT 50220 .......... .......... .......... .......... .......... .......... 353 CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA 50280 .......... .......... .......... .......... .......... .......... 353 ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 50340 |||||| |||| || || ||||||||| |||||| | | |||||||||| ||| ||||| ....GAGGAC ACATTAATCC AGCTGTGACA TTTGGTTTGT TCTTGGCAAG GAAGTTGTCA 409 TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATC 50388 || || |||| | || || || || |||||| || || |||| |||| ||| TTAACAAGGG CAGTGTTTTA TATAGTGATG CAATGTCTTG GTGCTATC 457 hqPGS_C08SLe0084H03.1+_SGN-E288467+ (49081 49416,50285 50388) ******************************************************************************** EST sequence 95 +strand 422 n (File: SGN-E265051+) 1 AAAAAATGGC ATAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 61 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 121 CATTGTTTGA ACCACGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 181 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT TTTAAGAGAT 241 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 301 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGAGG ACACATCAAC CCAGCTGTGA 361 CCTTTGGCCT TTTCTTGGCA AGGAAATTGT CCTTGACCAG GGCTGTTTTC TACATGGTGA 421 TG Predicted gene structure (within gDNA segment 48373 to 50980): Exon 1 49081 49416 ( 336 n); cDNA 1 336 ( 336 n); score: 0.991 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 0.98) Exon 2 50285 50370 ( 86 n); cDNA 337 422 ( 86 n); score: 0.988 MATCH C08SLe0084H03.1+ SGN-E265051+ 0.991 422 1.000 C PGS_C08SLe0084H03.1+_SGN-E265051+ (49081 49416,50285 50370) Alignment (genomic DNA sequence = upper lines): AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 49140 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAATGGC ATAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 60 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 49200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 120 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTTGA ACCACGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 180 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT TTTAAGAGAT 240 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 300 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC 49440 |||||||||| |||||||||| |||||||||| |||||| TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAG.... .......... .......... 336 ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA 49500 .......... .......... .......... .......... .......... .......... 336 TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG 49560 .......... .......... .......... .......... .......... .......... 336 TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT 49620 .......... .......... .......... .......... .......... .......... 336 ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT 49680 .......... .......... .......... .......... .......... .......... 336 TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA 49740 .......... .......... .......... .......... .......... .......... 336 TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG 49800 .......... .......... .......... .......... .......... .......... 336 TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA 49860 .......... .......... .......... .......... .......... .......... 336 ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT 49920 .......... .......... .......... .......... .......... .......... 336 AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA 49980 .......... .......... .......... .......... .......... .......... 336 TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT 50040 .......... .......... .......... .......... .......... .......... 336 GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT 50100 .......... .......... .......... .......... .......... .......... 336 TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT 50160 .......... .......... .......... .......... .......... .......... 336 ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT 50220 .......... .......... .......... .......... .......... .......... 336 CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA 50280 .......... .......... .......... .......... .......... .......... 336 ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 50340 |||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ....GAGGAC ACATCAACCC AGCTGTGACC TTTGGCCTTT TCTTGGCAAG GAAATTGTCC 392 TTGACCAGGG CTGTTTTCTA CATGGTGATG 50370 |||||||||| |||||||||| |||||||||| TTGACCAGGG CTGTTTTCTA CATGGTGATG 422 hqPGS_C08SLe0084H03.1+_SGN-E265051+ (49081 49416,50285 50370) ******************************************************************************** EST sequence 132 +strand 547 n (File: SGN-E249350+) 1 ATGATGTGTT CTCCACTATA AAATAAGACA AACCTTATCC GTGTCTCATC ACCTTACTTC 61 CTTGTCTTGG ATTCCATTGA GCACTCAATA ATATACACAC AGAGAAAAAA GTGAGTGAAG 121 AAAAAAAAAA TGGCAGAGAA CAAAGAAGAA GATGTTAATC TTGGAGCAAA CAAGTACAGG 181 GAAACTCAGC CATTGGGGAC AGCAGCTCAA ACAGACAAGG ATTACAAAGA GCCACCACCA 241 GCTCCTCTGT TTGAACCAGG GGAATTGTCA TCATGGTCTT TTTACAGAGC TGGAATTGCT 301 GAGTTTATGG CTACTTTCTT GTTTTTGTAC ATAACAATCT TGACTGTTAT GGGGCTTAAA 361 AGGTCTGATA GTTTGTGTTC TTCTGTGGGT GTTCAAGGAG TTGCTTGGGC TTTTGGTGGT 421 ATGATCTTTG CTTTGGTTTA CTGTACTGCT GGTATCTCAG GAGGACACAT TAATCCAGCT 481 GTGACATTTG GTTTGTTCTT GGCAAGGAAG TTGTCATTAA CAAGGGCAGT GTTTTATATA 541 GTGATGC Predicted gene structure (within gDNA segment 45975 to 50887): Exon 1 48219 48229 ( 11 n); cDNA 115 125 ( 11 n); score: 0.818 Intron 1 48230 49081 ( 852 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 49082 49416 ( 335 n); cDNA 126 460 ( 335 n); score: 0.910 Intron 2 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0.88) Exon 3 50285 50371 ( 87 n); cDNA 461 547 ( 87 n); score: 0.839 MATCH C08SLe0084H03.1+ SGN-E249350+ 0.896 433 0.792 C PGS_C08SLe0084H03.1+_SGN-E249350+ (48219 48229,49082 49416,50285 50371) Alignment (genomic DNA sequence = upper lines): GTGAATAATA AGTTGGTCTG GACCAGCTAA TCAAATTTAA ATTTGTTTTC AAATAATAAT 48278 ||||| || | | GTGAAGAAAA A......... .......... .......... .......... .......... 125 AATAATTAAC ACTGACACTC TGTATAAAGA TAAGATTAAC AAATAAACCA TACAAATAAT 48338 .......... .......... .......... .......... .......... .......... 125 CTGTCAACAT CTTCTCCACC TTTGGCCCTT TCCAGAACAC TCTTCTCTTT ATCATATTTT 48398 .......... .......... .......... .......... .......... .......... 125 AAAAAACTAA TTATATTAAT CTCGTAGTTT CTCGTTCTTC GATTTACGTT CCTATAATAC 48458 .......... .......... .......... .......... .......... .......... 125 TATTACTGTT GTAATAAAAT TTTGTATTAT TTACCGTTTG TTACATTTTA TATATCCGTT 48518 .......... .......... .......... .......... .......... .......... 125 ACTTCTTTAT CTGAATTGTT TCAAATAGTA TTTTACAAAA ATCTTAAAAA TTTAATTGAC 48578 .......... .......... .......... .......... .......... .......... 125 TGCTTAAATT TTTTACTTTA TTAACAAAGA TTCGGTTCCT ATTATAATTT CTAGCTCTTT 48638 .......... .......... .......... .......... .......... .......... 125 TTAAATAGAG TTCTATCGAA AATAATCTGT AATTATATTC TTTTATCTTC TATAGACTAA 48698 .......... .......... .......... .......... .......... .......... 125 AGTTTAAAAT GTTTTTTCTT TTAAATTAAG AGTCTATTAT AAATAACTTC TATTTCTTCG 48758 .......... .......... .......... .......... .......... .......... 125 AAACAGAATT GAAAATTTAC TTTTACTGTA TCTTGTATTA AATATCGATT TTATGTGAAA 48818 .......... .......... .......... .......... .......... .......... 125 ATACATTGAA TATAATTATT GTTATTATCC GAAGGAAAAA ACAAAAAGAG TAGACCAACA 48878 .......... .......... .......... .......... .......... .......... 125 CAATAATTAA TCGGACCAAT TTAATAAGTT TATCCCCACA TTTTAGTTTA ATTTATTTGT 48938 .......... .......... .......... .......... .......... .......... 125 ATTATAAAAA AATGATTTCT CCACTATAAA ACAACCACAG CCATATCTAT TCTCAGTATC 48998 .......... .......... .......... .......... .......... .......... 125 AAATTTGGTT CTTGCACTGA CCACTCAGCA CAAAGAAAGC AAAAAAAAAA AAAAGAAGAA 49058 .......... .......... .......... .......... .......... .......... 125 GAAAAAAGCT TCAATCTTTG TGAAAAAATG GCAGAAAACA AGGAAGAAGA TGTTAAGCTT 49118 ||||||| ||||| |||| | |||||||| |||||| ||| .......... .......... ...AAAAATG GCAGAGAACA AAGAAGAAGA TGTTAATCTT 162 GGAGCTAACA AGTTTAGGGA AACTCAACCA TTAGGTACAG CAGCTCAAAC AGACAAAGAT 49178 ||||| |||| ||| ||||| |||||| ||| || || |||| |||||||||| |||||| ||| GGAGCAAACA AGTACAGGGA AACTCAGCCA TTGGGGACAG CAGCTCAAAC AGACAAGGAT 222 TACAAAGAGC CACCACCAGC TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT 49238 |||||||||| |||||||||| ||| ||||| |||||||||| | |||||||| |||||| ||| TACAAAGAGC CACCACCAGC TCCTCTGTTT GAACCAGGGG AATTGTCATC ATGGTCTTTT 282 TACAGGGCTG GTATTGCAGA GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG 49298 ||||| |||| | ||||| || ||| ||||| |||||||||| | ||||| || ||||||||| TACAGAGCTG GAATTGCTGA GTTTATGGCT ACTTTCTTGT TTTTGTACAT AACAATCTTG 342 ACTGTTATGG GTCTTAAGAG ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT 49358 |||||||||| | ||||| || ||||||||| || ||||||| | |||||| | |||||| ||| ACTGTTATGG GGCTTAAAAG GTCTGATAGT TTGTGTTCTT CTGTGGGTGT TCAAGGAGTT 402 GCTTGGGCTT TTGGTGGTAT GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAGGT 49418 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||| GCTTGGGCTT TTGGTGGTAT GATCTTTGCT TTGGTTTACT GTACTGCTGG TATCTCAG.. 460 TGGTTTCATT GCCCCCCTTT TCATTCTTGA TGCTAAAGAT TGTAACTTTA CTTGTTTTAC 49478 .......... .......... .......... .......... .......... .......... 460 TTAAAGAGTG AGTTTGTGTT CATTTATTGT CTACTGATTG CTTTTGTCAA CTGGTTTTGT 49538 .......... .......... .......... .......... .......... .......... 460 GGATTGCTGA GTATGTAGAA GGTAAAGATT TGTTTTATTT TTACTGGTTT AGAGGTTTGA 49598 .......... .......... .......... .......... .......... .......... 460 AACATGTTAA CTGGTTTGTT TTATGTTTCT TGATTTCTTT GAGTTGATTC CCTTCTTTTG 49658 .......... .......... .......... .......... .......... .......... 460 CTTAAGATAG TTGAGCTTGT GTTCACTTAT TGTGTATATT TGTCGACTAA TTTAATGGAT 49718 .......... .......... .......... .......... .......... .......... 460 TCTTGATCTT GAGTATAGTC AATTAAAGAT TCATTTTTCA CTGTTTTTAA AGGTCCAAAA 49778 .......... .......... .......... .......... .......... .......... 460 CATGTTACTG GTTTGATTTC TGTGTCTGAG GTACAAAAAT GGAGTTTGGT GAAGCTTATT 49838 .......... .......... .......... .......... .......... .......... 460 CCTTTACCTC TATACTGTAA AAATATGACT TCTCTTTATT TTCCTTCGTT CACTAATTTT 49898 .......... .......... .......... .......... .......... .......... 460 GTATCTCATA CTTTTTACAA CTAATTTGAT GGATCCTTGA AGATTCAACC TTTCTTTGTC 49958 .......... .......... .......... .......... .......... .......... 460 TTGGAGGTTC AAAACATGTA AATGGTTTAT TTTCTGAATC TTGTTACTTT ACCCTTTTTA 50018 .......... .......... .......... .......... .......... .......... 460 TATAGCAAGT GTAACACTTT GTGGCTTATT TCTTTGTTTG CTTGCTTTTG ATCACCATAT 50078 .......... .......... .......... .......... .......... .......... 460 TTGAGCTTTT AGTTACTTTA TTTGTACCAT CATACCTTTT TCAACTAATT AATGGGATCT 50138 .......... .......... .......... .......... .......... .......... 460 TGAGTATAAT TCACATAAGG GTATAGTTTT TTCCTGTTTT GAAGTTCAAA GCATGTTACA 50198 .......... .......... .......... .......... .......... .......... 460 TATTTTGTAA AATGAGTCTT TTCCTTCTTT GAATAAGGGT TGGCTTGTTT CTCTGATGCT 50258 .......... .......... .......... .......... .......... .......... 460 AAATTCTGTG TTTTGATATC AAACAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT 50318 |||| |||||| || |||||||||| | |||||| | .......... .......... ......GAGG ACACATTAAT CCAGCTGTGA CATTTGGTTT 494 TTTCTTGGCA AGGAAATTGT CCTTGACCAG GGCTGTTTTC TACATGGTGA TGC 50371 ||||||||| ||||| |||| | || || || ||| || || || || |||| ||| GTTCTTGGCA AGGAAGTTGT CATTAACAAG GGCAGTGTTT TATATAGTGA TGC 547 hqPGS_C08SLe0084H03.1+_SGN-E249350+ (49082 49416,50285 50371) ******************************************************************************** EST sequence 24 +strand 575 n (File: SGN-E306478+) 1 AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC 61 AAACAGACAA AGATTACAAA GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT 121 CATCATGGTC CTTTTACAGG GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT 181 ATATCACAAT CTTGACTGTT ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG 241 GTATTCAAGG GGTTGCTTGG GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG 301 CTGGTATCTC AGGAGGACAC ATCAACCCAG CTGTGACCTT TGGTCTTTTC TTGGCAAGGA 361 AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA GTGCCTTGGT GCAATCTGTG 421 GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA AAGACTTGGT GGTGGTGCTA 481 ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG TGCTGAAATT ATTGGCACCT 541 TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGAT Predicted gene structure (within gDNA segment 48505 to 51157): Exon 1 49105 49416 ( 312 n); cDNA 1 312 ( 312 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50547 ( 263 n); cDNA 313 575 ( 263 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E306478+ 1.000 575 1.000 C PGS_C08SLe0084H03.1+_SGN-E306478+ (49105 49416,50285 50547) Alignment (genomic DNA sequence = upper lines): AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC 49164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC 60 AAACAGACAA AGATTACAAA GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT 49224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGACAA AGATTACAAA GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT 120 CATCATGGTC CTTTTACAGG GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT 49284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCATGGTC CTTTTACAGG GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT 180 ATATCACAAT CTTGACTGTT ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG 49344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCACAAT CTTGACTGTT ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG 240 GTATTCAAGG GGTTGCTTGG GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG 49404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTCAAGG GGTTGCTTGG GCTTTTGGTG GTATGATCTT TGCTTTGGTC TACTGTACTG 300 CTGGTATCTC AGGTTGGTTT CATTGCCCCC CTTTTCATTC TTGATGCTAA AGATTGTAAC 49464 |||||||||| || CTGGTATCTC AG........ .......... .......... .......... .......... 312 TTTACTTGTT TTACTTAAAG AGTGAGTTTG TGTTCATTTA TTGTCTACTG ATTGCTTTTG 49524 .......... .......... .......... .......... .......... .......... 312 TCAACTGGTT TTGTGGATTG CTGAGTATGT AGAAGGTAAA GATTTGTTTT ATTTTTACTG 49584 .......... .......... .......... .......... .......... .......... 312 GTTTAGAGGT TTGAAACATG TTAACTGGTT TGTTTTATGT TTCTTGATTT CTTTGAGTTG 49644 .......... .......... .......... .......... .......... .......... 312 ATTCCCTTCT TTTGCTTAAG ATAGTTGAGC TTGTGTTCAC TTATTGTGTA TATTTGTCGA 49704 .......... .......... .......... .......... .......... .......... 312 CTAATTTAAT GGATTCTTGA TCTTGAGTAT AGTCAATTAA AGATTCATTT TTCACTGTTT 49764 .......... .......... .......... .......... .......... .......... 312 TTAAAGGTCC AAAACATGTT ACTGGTTTGA TTTCTGTGTC TGAGGTACAA AAATGGAGTT 49824 .......... .......... .......... .......... .......... .......... 312 TGGTGAAGCT TATTCCTTTA CCTCTATACT GTAAAAATAT GACTTCTCTT TATTTTCCTT 49884 .......... .......... .......... .......... .......... .......... 312 CGTTCACTAA TTTTGTATCT CATACTTTTT ACAACTAATT TGATGGATCC TTGAAGATTC 49944 .......... .......... .......... .......... .......... .......... 312 AACCTTTCTT TGTCTTGGAG GTTCAAAACA TGTAAATGGT TTATTTTCTG AATCTTGTTA 50004 .......... .......... .......... .......... .......... .......... 312 CTTTACCCTT TTTATATAGC AAGTGTAACA CTTTGTGGCT TATTTCTTTG TTTGCTTGCT 50064 .......... .......... .......... .......... .......... .......... 312 TTTGATCACC ATATTTGAGC TTTTAGTTAC TTTATTTGTA CCATCATACC TTTTTCAACT 50124 .......... .......... .......... .......... .......... .......... 312 AATTAATGGG ATCTTGAGTA TAATTCACAT AAGGGTATAG TTTTTTCCTG TTTTGAAGTT 50184 .......... .......... .......... .......... .......... .......... 312 CAAAGCATGT TACATATTTT GTAAAATGAG TCTTTTCCTT CTTTGAATAA GGGTTGGCTT 50244 .......... .......... .......... .......... .......... .......... 312 GTTTCTCTGA TGCTAAATTC TGTGTTTTGA TATCAAACAG GAGGACACAT CAACCCAGCT 50304 |||||||||| |||||||||| .......... .......... .......... .......... GAGGACACAT CAACCCAGCT 332 GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG 50364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG 392 GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA 50424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA 452 CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT 50484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT 512 GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT 50544 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT 572 GAT 50547 ||| GAT 575 hqPGS_C08SLe0084H03.1+_SGN-E306478+ (49105 49416,50285 50547) ******************************************************************************** EST sequence 121 +strand 613 n (File: SGN-E300227+) 1 AAAAATGGCA GAAAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA 61 CAAAGATTAC AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG 121 GTCCTTTTAC AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC 181 AATCTTGACT GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA 241 AGGGGTTGCT TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT 301 CTCAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC 361 CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG 421 TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT GGTGGTGGTG CTAATGTTGT 481 TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT 541 TGTTTACACT GTTTTTTCAG CCACTGATGC CAAGAGAAAT GCCAGAGACT CACATGTTCC 601 TATTTTGGCA CCA Predicted gene structure (within gDNA segment 48395 to 51310): Exon 1 49113 49416 ( 304 n); cDNA 2 305 ( 304 n); score: 0.980 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 306 601 ( 296 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E300227+ 0.990 600 0.979 C PGS_C08SLe0084H03.1+_SGN-E300227+ (49113 49416,50285 50580) Alignment (genomic DNA sequence = upper lines): AAGCTTGGAG CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC 49172 || | | || |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGCAG AAAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC 61 AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG 49232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG 121 TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA 49292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA 181 ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA 49352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA 241 GGGGTTGCTT GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC 49412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTGCTT GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC 301 TCAGGTTGGT TTCATTGCCC CCCTTTTCAT TCTTGATGCT AAAGATTGTA ACTTTACTTG 49472 |||| TCAG...... .......... .......... .......... .......... .......... 305 TTTTACTTAA AGAGTGAGTT TGTGTTCATT TATTGTCTAC TGATTGCTTT TGTCAACTGG 49532 .......... .......... .......... .......... .......... .......... 305 TTTTGTGGAT TGCTGAGTAT GTAGAAGGTA AAGATTTGTT TTATTTTTAC TGGTTTAGAG 49592 .......... .......... .......... .......... .......... .......... 305 GTTTGAAACA TGTTAACTGG TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT TGATTCCCTT 49652 .......... .......... .......... .......... .......... .......... 305 CTTTTGCTTA AGATAGTTGA GCTTGTGTTC ACTTATTGTG TATATTTGTC GACTAATTTA 49712 .......... .......... .......... .......... .......... .......... 305 ATGGATTCTT GATCTTGAGT ATAGTCAATT AAAGATTCAT TTTTCACTGT TTTTAAAGGT 49772 .......... .......... .......... .......... .......... .......... 305 CCAAAACATG TTACTGGTTT GATTTCTGTG TCTGAGGTAC AAAAATGGAG TTTGGTGAAG 49832 .......... .......... .......... .......... .......... .......... 305 CTTATTCCTT TACCTCTATA CTGTAAAAAT ATGACTTCTC TTTATTTTCC TTCGTTCACT 49892 .......... .......... .......... .......... .......... .......... 305 AATTTTGTAT CTCATACTTT TTACAACTAA TTTGATGGAT CCTTGAAGAT TCAACCTTTC 49952 .......... .......... .......... .......... .......... .......... 305 TTTGTCTTGG AGGTTCAAAA CATGTAAATG GTTTATTTTC TGAATCTTGT TACTTTACCC 50012 .......... .......... .......... .......... .......... .......... 305 TTTTTATATA GCAAGTGTAA CACTTTGTGG CTTATTTCTT TGTTTGCTTG CTTTTGATCA 50072 .......... .......... .......... .......... .......... .......... 305 CCATATTTGA GCTTTTAGTT ACTTTATTTG TACCATCATA CCTTTTTCAA CTAATTAATG 50132 .......... .......... .......... .......... .......... .......... 305 GGATCTTGAG TATAATTCAC ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT 50192 .......... .......... .......... .......... .......... .......... 305 GTTACATATT TTGTAAAATG AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT 50252 .......... .......... .......... .......... .......... .......... 305 GATGCTAAAT TCTGTGTTTT GATATCAAAC AGGAGGACAC ATCAACCCAG CTGTGACCTT 50312 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GAGGACAC ATCAACCCAG CTGTGACCTT 333 TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA 50372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA 393 GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA 50432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA 453 AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 50492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 513 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 50552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 573 GAGAAATGCC AGAGACTCAC ATGTTCCT 50580 |||||||||| |||||||||| |||||||| GAGAAATGCC AGAGACTCAC ATGTTCCT 601 hqPGS_C08SLe0084H03.1+_SGN-E300227+ (49113 49416,50285 50580) ******************************************************************************** EST sequence 79 +strand 534 n (File: SGN-E299408+) 1 AAGCTTGGAG CTAACAAGTT TAGGGAAACT TAACCATTAG GTACAGCAGC TCAAACAGAC 61 AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG 121 TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA 181 ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA 241 GGGGTTGCTT GGGCTTTTGG TGAGATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC 301 TCAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 361 TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT 421 GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT 481 AACCCTGGAT ACACCAAGGG TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTT Predicted gene structure (within gDNA segment 48513 to 51124): Exon 1 49113 49416 ( 304 n); cDNA 1 304 ( 304 n); score: 0.990 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.96), Pa: 0.992 (s: 1.00) Exon 2 50285 50514 ( 230 n); cDNA 305 534 ( 230 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E299408+ 0.994 534 1.000 C PGS_C08SLe0084H03.1+_SGN-E299408+ (49113 49416,50285 50514) Alignment (genomic DNA sequence = upper lines): AAGCTTGGAG CTAACAAGTT TAGGGAAACT CAACCATTAG GTACAGCAGC TCAAACAGAC 49172 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AAGCTTGGAG CTAACAAGTT TAGGGAAACT TAACCATTAG GTACAGCAGC TCAAACAGAC 60 AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG 49232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG 120 TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA 49292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA 180 ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA 49352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTCTTCAGT GGGTATTCAA 240 GGGGTTGCTT GGGCTTTTGG TGGTATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC 49412 |||||||||| |||||||||| || |||||| |||||||||| |||||||||| |||||||||| GGGGTTGCTT GGGCTTTTGG TGAGATGATC TTTGCTTTGG TCTACTGTAC TGCTGGTATC 300 TCAGGTTGGT TTCATTGCCC CCCTTTTCAT TCTTGATGCT AAAGATTGTA ACTTTACTTG 49472 |||| TCAG...... .......... .......... .......... .......... .......... 304 TTTTACTTAA AGAGTGAGTT TGTGTTCATT TATTGTCTAC TGATTGCTTT TGTCAACTGG 49532 .......... .......... .......... .......... .......... .......... 304 TTTTGTGGAT TGCTGAGTAT GTAGAAGGTA AAGATTTGTT TTATTTTTAC TGGTTTAGAG 49592 .......... .......... .......... .......... .......... .......... 304 GTTTGAAACA TGTTAACTGG TTTGTTTTAT GTTTCTTGAT TTCTTTGAGT TGATTCCCTT 49652 .......... .......... .......... .......... .......... .......... 304 CTTTTGCTTA AGATAGTTGA GCTTGTGTTC ACTTATTGTG TATATTTGTC GACTAATTTA 49712 .......... .......... .......... .......... .......... .......... 304 ATGGATTCTT GATCTTGAGT ATAGTCAATT AAAGATTCAT TTTTCACTGT TTTTAAAGGT 49772 .......... .......... .......... .......... .......... .......... 304 CCAAAACATG TTACTGGTTT GATTTCTGTG TCTGAGGTAC AAAAATGGAG TTTGGTGAAG 49832 .......... .......... .......... .......... .......... .......... 304 CTTATTCCTT TACCTCTATA CTGTAAAAAT ATGACTTCTC TTTATTTTCC TTCGTTCACT 49892 .......... .......... .......... .......... .......... .......... 304 AATTTTGTAT CTCATACTTT TTACAACTAA TTTGATGGAT CCTTGAAGAT TCAACCTTTC 49952 .......... .......... .......... .......... .......... .......... 304 TTTGTCTTGG AGGTTCAAAA CATGTAAATG GTTTATTTTC TGAATCTTGT TACTTTACCC 50012 .......... .......... .......... .......... .......... .......... 304 TTTTTATATA GCAAGTGTAA CACTTTGTGG CTTATTTCTT TGTTTGCTTG CTTTTGATCA 50072 .......... .......... .......... .......... .......... .......... 304 CCATATTTGA GCTTTTAGTT ACTTTATTTG TACCATCATA CCTTTTTCAA CTAATTAATG 50132 .......... .......... .......... .......... .......... .......... 304 GGATCTTGAG TATAATTCAC ATAAGGGTAT AGTTTTTTCC TGTTTTGAAG TTCAAAGCAT 50192 .......... .......... .......... .......... .......... .......... 304 GTTACATATT TTGTAAAATG AGTCTTTTCC TTCTTTGAAT AAGGGTTGGC TTGTTTCTCT 50252 .......... .......... .......... .......... .......... .......... 304 GATGCTAAAT TCTGTGTTTT GATATCAAAC AGGAGGACAC ATCAACCCAG CTGTGACCTT 50312 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GAGGACAC ATCAACCCAG CTGTGACCTT 332 TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA 50372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA 392 GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA 50432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA 452 AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 50492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 512 TGCTGAAATT ATTGGCACCT TT 50514 |||||||||| |||||||||| || TGCTGAAATT ATTGGCACCT TT 534 hqPGS_C08SLe0084H03.1+_SGN-E299408+ (49113 49416,50285 50514) ******************************************************************************** EST sequence 76 +strand 389 n (File: SGN-E265524+) 1 GGGAAACTCA GCCATTGGGG ACAGCAGCTC AAACAGACAA GGATTACAAA GAGCCACCAC 61 CAGCTCCTCT GTTTGAACCA GGGGAATTGT CATCATGGTC TTTTTACAGA GCTGGAATTG 121 CTGAGTTTAT GGCTACTTTC TTGTTTTTGT ACATAACAAT CTTGACTGTT ATGGGGCTTA 181 AAAGGTCTGA TAGTTTGTGT TCTTCTGTGG GTGTTCAAGG AGTTGCTTGG GCTTTTGGTG 241 GTATGATCTT TGCTTTGGTT TACTGTACTG CTGGTATCTC AGGAGGACAC ATTAATCCAG 301 CTGTGACATT TGGTTTGTTC TTGGCAAGGA AGTTGTCATT AACAAGGGCA GTGTTTTATA 361 TAGTGATGCA GTGTCTTGGT GCTATCTGT Predicted gene structure (within gDNA segment 48355 to 51087): Exon 1 49135 49416 ( 282 n); cDNA 1 282 ( 282 n); score: 0.915 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0.88) Exon 2 50285 50391 ( 107 n); cDNA 283 389 ( 107 n); score: 0.850 MATCH C08SLe0084H03.1+ SGN-E265524+ 0.897 389 1.000 C PGS_C08SLe0084H03.1+_SGN-E265524+ (49135 49416,50285 50391) Alignment (genomic DNA sequence = upper lines): GGGAAACTCA ACCATTAGGT ACAGCAGCTC AAACAGACAA AGATTACAAA GAGCCACCAC 49194 |||||||||| ||||| || |||||||||| |||||||||| ||||||||| |||||||||| GGGAAACTCA GCCATTGGGG ACAGCAGCTC AAACAGACAA GGATTACAAA GAGCCACCAC 60 CAGCTCCATT GTTTGAACCA GGGGAGTTGT CATCATGGTC CTTTTACAGG GCTGGTATTG 49254 ||||||| | |||||||||| ||||| |||| |||||||||| |||||||| ||||| |||| CAGCTCCTCT GTTTGAACCA GGGGAATTGT CATCATGGTC TTTTTACAGA GCTGGAATTG 120 CAGAGTTCAT GGCAACTTTC TTGTTCTTGT ATATCACAAT CTTGACTGTT ATGGGTCTTA 49314 | ||||| || ||| |||||| ||||| |||| | || ||||| |||||||||| ||||| |||| CTGAGTTTAT GGCTACTTTC TTGTTTTTGT ACATAACAAT CTTGACTGTT ATGGGGCTTA 180 AGAGATCTGA TAGTTTATGT TCTTCAGTGG GTATTCAAGG GGTTGCTTGG GCTTTTGGTG 49374 | || ||||| |||||| ||| ||||| |||| || ||||||| ||||||||| |||||||||| AAAGGTCTGA TAGTTTGTGT TCTTCTGTGG GTGTTCAAGG AGTTGCTTGG GCTTTTGGTG 240 GTATGATCTT TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGTTGGTTT CATTGCCCCC 49434 |||||||||| ||||||||| |||||||||| |||||||||| || GTATGATCTT TGCTTTGGTT TACTGTACTG CTGGTATCTC AG........ .......... 282 CTTTTCATTC TTGATGCTAA AGATTGTAAC TTTACTTGTT TTACTTAAAG AGTGAGTTTG 49494 .......... .......... .......... .......... .......... .......... 282 TGTTCATTTA TTGTCTACTG ATTGCTTTTG TCAACTGGTT TTGTGGATTG CTGAGTATGT 49554 .......... .......... .......... .......... .......... .......... 282 AGAAGGTAAA GATTTGTTTT ATTTTTACTG GTTTAGAGGT TTGAAACATG TTAACTGGTT 49614 .......... .......... .......... .......... .......... .......... 282 TGTTTTATGT TTCTTGATTT CTTTGAGTTG ATTCCCTTCT TTTGCTTAAG ATAGTTGAGC 49674 .......... .......... .......... .......... .......... .......... 282 TTGTGTTCAC TTATTGTGTA TATTTGTCGA CTAATTTAAT GGATTCTTGA TCTTGAGTAT 49734 .......... .......... .......... .......... .......... .......... 282 AGTCAATTAA AGATTCATTT TTCACTGTTT TTAAAGGTCC AAAACATGTT ACTGGTTTGA 49794 .......... .......... .......... .......... .......... .......... 282 TTTCTGTGTC TGAGGTACAA AAATGGAGTT TGGTGAAGCT TATTCCTTTA CCTCTATACT 49854 .......... .......... .......... .......... .......... .......... 282 GTAAAAATAT GACTTCTCTT TATTTTCCTT CGTTCACTAA TTTTGTATCT CATACTTTTT 49914 .......... .......... .......... .......... .......... .......... 282 ACAACTAATT TGATGGATCC TTGAAGATTC AACCTTTCTT TGTCTTGGAG GTTCAAAACA 49974 .......... .......... .......... .......... .......... .......... 282 TGTAAATGGT TTATTTTCTG AATCTTGTTA CTTTACCCTT TTTATATAGC AAGTGTAACA 50034 .......... .......... .......... .......... .......... .......... 282 CTTTGTGGCT TATTTCTTTG TTTGCTTGCT TTTGATCACC ATATTTGAGC TTTTAGTTAC 50094 .......... .......... .......... .......... .......... .......... 282 TTTATTTGTA CCATCATACC TTTTTCAACT AATTAATGGG ATCTTGAGTA TAATTCACAT 50154 .......... .......... .......... .......... .......... .......... 282 AAGGGTATAG TTTTTTCCTG TTTTGAAGTT CAAAGCATGT TACATATTTT GTAAAATGAG 50214 .......... .......... .......... .......... .......... .......... 282 TCTTTTCCTT CTTTGAATAA GGGTTGGCTT GTTTCTCTGA TGCTAAATTC TGTGTTTTGA 50274 .......... .......... .......... .......... .......... .......... 282 TATCAAACAG GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA 50334 |||||||||| || |||||| ||||| |||| || | ||||| ||||||||| .......... GAGGACACAT TAATCCAGCT GTGACATTTG GTTTGTTCTT GGCAAGGAAG 332 TTGTCCTTGA CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGT 50391 ||||| || | | ||||| || || || || |||||||||| | |||||||| |||||| TTGTCATTAA CAAGGGCAGT GTTTTATATA GTGATGCAGT GTCTTGGTGC TATCTGT 389 hqPGS_C08SLe0084H03.1+_SGN-E265524+ (49135 49416,50285 50391) ******************************************************************************** EST sequence 133 +strand 480 n (File: SGN-E259980+) 1 CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT 61 GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG 121 GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT 181 TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG AGGACACATC 241 AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT 301 TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC 361 ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC 421 AAAGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT Predicted gene structure (within gDNA segment 48588 to 51145): Exon 1 49188 49416 ( 229 n); cDNA 1 229 ( 229 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50535 ( 251 n); cDNA 230 480 ( 251 n); score: 0.996 MATCH C08SLe0084H03.1+ SGN-E259980+ 0.998 480 1.000 C PGS_C08SLe0084H03.1+_SGN-E259980+ (49188 49416,50285 50535) Alignment (genomic DNA sequence = upper lines): CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT 49247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCACCAG CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT 60 GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG 49307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG 120 GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT 49367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT 180 TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT 49427 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAG. .......... 229 TGCCCCCCTT TTCATTCTTG ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT 49487 .......... .......... .......... .......... .......... .......... 229 GAGTTTGTGT TCATTTATTG TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG 49547 .......... .......... .......... .......... .......... .......... 229 AGTATGTAGA AGGTAAAGAT TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA 49607 .......... .......... .......... .......... .......... .......... 229 ACTGGTTTGT TTTATGTTTC TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA 49667 .......... .......... .......... .......... .......... .......... 229 GTTGAGCTTG TGTTCACTTA TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT 49727 .......... .......... .......... .......... .......... .......... 229 TGAGTATAGT CAATTAAAGA TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT 49787 .......... .......... .......... .......... .......... .......... 229 GGTTTGATTT CTGTGTCTGA GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT 49847 .......... .......... .......... .......... .......... .......... 229 CTATACTGTA AAAATATGAC TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT 49907 .......... .......... .......... .......... .......... .......... 229 ACTTTTTACA ACTAATTTGA TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT 49967 .......... .......... .......... .......... .......... .......... 229 CAAAACATGT AAATGGTTTA TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG 50027 .......... .......... .......... .......... .......... .......... 229 TGTAACACTT TGTGGCTTAT TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT 50087 .......... .......... .......... .......... .......... .......... 229 TAGTTACTTT ATTTGTACCA TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA 50147 .......... .......... .......... .......... .......... .......... 229 TTCACATAAG GGTATAGTTT TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA 50207 .......... .......... .......... .......... .......... .......... 229 AAATGAGTCT TTTCCTTCTT TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT 50267 .......... .......... .......... .......... .......... .......... 229 GTTTTGATAT CAAACAGGAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC 50327 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC 272 AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT 50387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT 332 CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG 50447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG 392 TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG 50507 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGCTAATGTT GTTAACCCTG GATACACCAA AGGTGATGGC CTTGGTGCTG AAATTATTGG 452 CACCTTTGTC CTTGTTTACA CTGTTTTT 50535 |||||||||| |||||||||| |||||||| CACCTTTGTC CTTGTTTACA CTGTTTTT 480 hqPGS_C08SLe0084H03.1+_SGN-E259980+ (49188 49416,50285 50535) ******************************************************************************** EST sequence 14 +strand 775 n (File: SGN-E537525+) 1 CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG 61 AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA 121 GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA 181 TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG AGGACACATC AACCCAGCTG 241 TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG 301 TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC 361 CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG 421 GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 481 ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT 541 TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG 601 CCAGGAGTCT TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT GACCACTGGA 661 TCTTCTGGGT TGGACAATGA TTGGAGCTGC TCTTGCTGCT ATTTACCACA AATAATTATC 721 AGAGCTATGC CATTCCACAG GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCT Predicted gene structure (within gDNA segment 48598 to 52602): Exon 1 49198 49416 ( 219 n); cDNA 1 219 ( 219 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 220 515 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 516 656 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 0.98) Exon 4 51872 51992 ( 121 n); cDNA 657 775 ( 119 n); score: 0.983 MATCH C08SLe0084H03.1+ SGN-E537525+ 0.997 777 1.003 C PGS_C08SLe0084H03.1+_SGN-E537525+ (49198 49416,50285 50580,51611 51751,51872 51992) Alignment (genomic DNA sequence = upper lines): CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG 49257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCATTGTT TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG 60 AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA 49317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA 120 GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA 49377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA 180 TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT 49437 |||||||||| |||||||||| |||||||||| ||||||||| TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAG. .......... .......... 219 TTCATTCTTG ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT 49497 .......... .......... .......... .......... .......... .......... 219 TCATTTATTG TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA 49557 .......... .......... .......... .......... .......... .......... 219 AGGTAAAGAT TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT 49617 .......... .......... .......... .......... .......... .......... 219 TTTATGTTTC TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG 49677 .......... .......... .......... .......... .......... .......... 219 TGTTCACTTA TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT 49737 .......... .......... .......... .......... .......... .......... 219 CAATTAAAGA TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT 49797 .......... .......... .......... .......... .......... .......... 219 CTGTGTCTGA GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA 49857 .......... .......... .......... .......... .......... .......... 219 AAAATATGAC TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA 49917 .......... .......... .......... .......... .......... .......... 219 ACTAATTTGA TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT 49977 .......... .......... .......... .......... .......... .......... 219 AAATGGTTTA TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT 50037 .......... .......... .......... .......... .......... .......... 219 TGTGGCTTAT TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT 50097 .......... .......... .......... .......... .......... .......... 219 ATTTGTACCA TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG 50157 .......... .......... .......... .......... .......... .......... 219 GGTATAGTTT TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT 50217 .......... .......... .......... .......... .......... .......... 219 TTTCCTTCTT TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT 50277 .......... .......... .......... .......... .......... .......... 219 CAAACAGGAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG 50337 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG 272 TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT 50397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT 332 GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT 50457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT 392 GTTAACCCTG GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC 50517 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAACCCTG GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC 452 CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT 50577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT 512 CCTGTAAGTG TTTTCCTCTT GTAGTTTTAT TTCTTCTTTG TGATATCAAG TTTGCTTATC 50637 ||| CCT....... .......... .......... .......... .......... .......... 515 ATGGATATTT ACATGTTAAT TCTAAGCTAG AGTCTAACCA GAAATTTTGG AAGTAGTTTC 50697 .......... .......... .......... .......... .......... .......... 515 TGAAAATTTA TCAATGATAT ATGTGACTTT ACATTACATA GTTTGACGAT AAGTGAAGCG 50757 .......... .......... .......... .......... .......... .......... 515 TGACAAGTAA AAATGATCGT AGGGCCAACT TGTTACCCTA CATTGTCTGA TGAGAAGTGA 50817 .......... .......... .......... .......... .......... .......... 515 AAAGTGACAA GTAAAAATGA CCGTAGGGCC AACTTGTTAC CATACATAGT TTGACGAGAA 50877 .......... .......... .......... .......... .......... .......... 515 GTGAAAAGTG ATTTTATGAC AAGTAAAAGT GAACGGAGGG TATTAAACAA CCAACTTGCT 50937 .......... .......... .......... .......... .......... .......... 515 ATAACATGTT AAATTACTCT AGTAGGGTAA AAGTTCATTG TACTGTTTAA TGTATGTAAA 50997 .......... .......... .......... .......... .......... .......... 515 AAGTTGAAAT CTTGCAAGAC AAGTGGGTCT TACTTTTTGG TAAGTTAGGC AAAAATATTG 51057 .......... .......... .......... .......... .......... .......... 515 TTCATGCTAT AGCATGTGGC ATGTCTGGTT TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG 51117 .......... .......... .......... .......... .......... .......... 515 GTTATGTTGT GGGCCTAATT GAGTTAGGCT AAAGATAGTG ATGTTCATGT GATAAGTTAT 51177 .......... .......... .......... .......... .......... .......... 515 TGTAACTGTG GACTTTTTCT TGTCATGGAG TGGCTCGCCA CGTCACAGTG TTGTGGACCT 51237 .......... .......... .......... .......... .......... .......... 515 TTAGGTCATC TCCGATCCAT AACACCAACT TTTATACTAA AAACGTGTAT CAAATGCGCT 51297 .......... .......... .......... .......... .......... .......... 515 ACACTGATTG TTCGACATAA TATTATATAA AGAATGATTT GGTATATTAG GGAGTTTTCA 51357 .......... .......... .......... .......... .......... .......... 515 AAAACGTAGA ATTTATACGT TGAGTTAAGT TTCTTTGTAT TTTGTGGAGT GGAGATGTAA 51417 .......... .......... .......... .......... .......... .......... 515 ATGACACCAA ATTTCATATT ATTGTAGTGT CCGGATAATG GTGTGATACT ATTCATCAAC 51477 .......... .......... .......... .......... .......... .......... 515 GCCTATTTTA TATAGAATGA TCACATAAGA ACATTGTTGG CCAGTCTTAG CTCACCACAA 51537 .......... .......... .......... .......... .......... .......... 515 CTATCTTTTT GCGCTTATGT CTAAGAGAAA TCCTTGGAAG ACATTTGTCT GATAATCTTT 51597 .......... .......... .......... .......... .......... .......... 515 ATGTTTATTG TAGATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT 51657 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...ATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT 562 GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT 51717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT 622 CATCTACAAC GACGAGCATG CATGGAATGA CCACGTAAGA AAAACATCTT TCATTCTTTT 51777 |||||||||| |||||||||| |||||||||| |||| CATCTACAAC GACGAGCATG CATGGAATGA CCAC...... .......... .......... 656 AAACTGACTC GAACACCACA GTTACTTGAA CCAAAAAAAG GAGAGCTTAA TCTAACAAAG 51837 .......... .......... .......... .......... .......... .......... 656 GGGTTCTTGT TTGTTTTTTG TTGTTTTTGA ACAGTGGATC TTCTGGGTTG GACCAATGAT 51897 |||||| |||||||||| || ||||||| .......... .......... .......... ....TGGATC TTCTGGGTTG GA-CAATGAT 681 TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC AGAGCTATGC CATTCCACAG 51957 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TGGAGCTGCT CTTGCTGCTA TTTACCA-CA AATAATTATC AGAGCTATGC CATTCCACAG 740 GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCT 51992 |||||||||| |||||||||| |||||||||| ||||| GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCT 775 hqPGS_C08SLe0084H03.1+_SGN-E537525+ (49198 49416,50285 50580,51611 51751,51872 51992) ******************************************************************************** EST sequence 82 +strand 544 n (File: SGN-E275877+) 1 TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA 61 GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG 121 ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT 181 GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAGGA GGACACATCA ACCCAGCTGT 241 GACCTTTGGT CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT 301 GATGCAGTGC CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA TGGTAGGACC 361 ATACCAAAGA CTTGGTGGTG GTGCTAATGT TGTTAACCCT GGATACACCA AGGGTGATGG 421 CCTTGGTGCT GAAATTATTG GCACCTTTGT CCTTGTTTAC ACTGTTTTTT CAGCCACTGA 481 TGCCAAGAGA AATGCCAGAG ACTCACATGT TCCTATTTTG GCACCACTTC CTATTGGATT 541 CGCA Predicted gene structure (within gDNA segment 48599 to 52250): Exon 1 49199 49416 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 219 514 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 0) Exon 3 51611 51640 ( 30 n); cDNA 515 544 ( 30 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E275877+ 1.000 544 1.000 C PGS_C08SLe0084H03.1+_SGN-E275877+ (49199 49416,50285 50580,51611 51640) Alignment (genomic DNA sequence = upper lines): TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA 49258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATTGTTT GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA 60 GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG 49318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCATGGCA ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG 120 ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT 49378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGATAGT TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT 180 GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAGGT TGGTTTCATT GCCCCCCTTT 49438 |||||||||| |||||||||| |||||||||| |||||||| GATCTTTGCT TTGGTCTACT GTACTGCTGG TATCTCAG.. .......... .......... 218 TCATTCTTGA TGCTAAAGAT TGTAACTTTA CTTGTTTTAC TTAAAGAGTG AGTTTGTGTT 49498 .......... .......... .......... .......... .......... .......... 218 CATTTATTGT CTACTGATTG CTTTTGTCAA CTGGTTTTGT GGATTGCTGA GTATGTAGAA 49558 .......... .......... .......... .......... .......... .......... 218 GGTAAAGATT TGTTTTATTT TTACTGGTTT AGAGGTTTGA AACATGTTAA CTGGTTTGTT 49618 .......... .......... .......... .......... .......... .......... 218 TTATGTTTCT TGATTTCTTT GAGTTGATTC CCTTCTTTTG CTTAAGATAG TTGAGCTTGT 49678 .......... .......... .......... .......... .......... .......... 218 GTTCACTTAT TGTGTATATT TGTCGACTAA TTTAATGGAT TCTTGATCTT GAGTATAGTC 49738 .......... .......... .......... .......... .......... .......... 218 AATTAAAGAT TCATTTTTCA CTGTTTTTAA AGGTCCAAAA CATGTTACTG GTTTGATTTC 49798 .......... .......... .......... .......... .......... .......... 218 TGTGTCTGAG GTACAAAAAT GGAGTTTGGT GAAGCTTATT CCTTTACCTC TATACTGTAA 49858 .......... .......... .......... .......... .......... .......... 218 AAATATGACT TCTCTTTATT TTCCTTCGTT CACTAATTTT GTATCTCATA CTTTTTACAA 49918 .......... .......... .......... .......... .......... .......... 218 CTAATTTGAT GGATCCTTGA AGATTCAACC TTTCTTTGTC TTGGAGGTTC AAAACATGTA 49978 .......... .......... .......... .......... .......... .......... 218 AATGGTTTAT TTTCTGAATC TTGTTACTTT ACCCTTTTTA TATAGCAAGT GTAACACTTT 50038 .......... .......... .......... .......... .......... .......... 218 GTGGCTTATT TCTTTGTTTG CTTGCTTTTG ATCACCATAT TTGAGCTTTT AGTTACTTTA 50098 .......... .......... .......... .......... .......... .......... 218 TTTGTACCAT CATACCTTTT TCAACTAATT AATGGGATCT TGAGTATAAT TCACATAAGG 50158 .......... .......... .......... .......... .......... .......... 218 GTATAGTTTT TTCCTGTTTT GAAGTTCAAA GCATGTTACA TATTTTGTAA AATGAGTCTT 50218 .......... .......... .......... .......... .......... .......... 218 TTCCTTCTTT GAATAAGGGT TGGCTTGTTT CTCTGATGCT AAATTCTGTG TTTTGATATC 50278 .......... .......... .......... .......... .......... .......... 218 AAACAGGAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA AGGAAATTGT 50338 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAGG ACACATCAAC CCAGCTGTGA CCTTTGGTCT TTTCTTGGCA AGGAAATTGT 272 CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC TGTGGTGCTG 50398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGACCAG GGCTGTTTTC TACATGGTGA TGCAGTGCCT TGGTGCAATC TGTGGTGCTG 332 GTGTTGTGAA GGGCTTCATG GTAGGACCAT ACCAAAGACT TGGTGGTGGT GCTAATGTTG 50458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTGTGAA GGGCTTCATG GTAGGACCAT ACCAAAGACT TGGTGGTGGT GCTAATGTTG 392 TTAACCCTGG ATACACCAAG GGTGATGGCC TTGGTGCTGA AATTATTGGC ACCTTTGTCC 50518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACCCTGG ATACACCAAG GGTGATGGCC TTGGTGCTGA AATTATTGGC ACCTTTGTCC 452 TTGTTTACAC TGTTTTTTCA GCCACTGATG CCAAGAGAAA TGCCAGAGAC TCACATGTTC 50578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTACAC TGTTTTTTCA GCCACTGATG CCAAGAGAAA TGCCAGAGAC TCACATGTTC 512 CTGTAAGTGT TTTCCTCTTG TAGTTTTATT TCTTCTTTGT GATATCAAGT TTGCTTATCA 50638 || CT........ .......... .......... .......... .......... .......... 514 TGGATATTTA CATGTTAATT CTAAGCTAGA GTCTAACCAG AAATTTTGGA AGTAGTTTCT 50698 .......... .......... .......... .......... .......... .......... 514 GAAAATTTAT CAATGATATA TGTGACTTTA CATTACATAG TTTGACGATA AGTGAAGCGT 50758 .......... .......... .......... .......... .......... .......... 514 GACAAGTAAA AATGATCGTA GGGCCAACTT GTTACCCTAC ATTGTCTGAT GAGAAGTGAA 50818 .......... .......... .......... .......... .......... .......... 514 AAGTGACAAG TAAAAATGAC CGTAGGGCCA ACTTGTTACC ATACATAGTT TGACGAGAAG 50878 .......... .......... .......... .......... .......... .......... 514 TGAAAAGTGA TTTTATGACA AGTAAAAGTG AACGGAGGGT ATTAAACAAC CAACTTGCTA 50938 .......... .......... .......... .......... .......... .......... 514 TAACATGTTA AATTACTCTA GTAGGGTAAA AGTTCATTGT ACTGTTTAAT GTATGTAAAA 50998 .......... .......... .......... .......... .......... .......... 514 AGTTGAAATC TTGCAAGACA AGTGGGTCTT ACTTTTTGGT AAGTTAGGCA AAAATATTGT 51058 .......... .......... .......... .......... .......... .......... 514 TCATGCTATA GCATGTGGCA TGTCTGGTTT TGTCAGCAAG TCCTTTTAGT TGGTGTAGGG 51118 .......... .......... .......... .......... .......... .......... 514 TTATGTTGTG GGCCTAATTG AGTTAGGCTA AAGATAGTGA TGTTCATGTG ATAAGTTATT 51178 .......... .......... .......... .......... .......... .......... 514 GTAACTGTGG ACTTTTTCTT GTCATGGAGT GGCTCGCCAC GTCACAGTGT TGTGGACCTT 51238 .......... .......... .......... .......... .......... .......... 514 TAGGTCATCT CCGATCCATA ACACCAACTT TTATACTAAA AACGTGTATC AAATGCGCTA 51298 .......... .......... .......... .......... .......... .......... 514 CACTGATTGT TCGACATAAT ATTATATAAA GAATGATTTG GTATATTAGG GAGTTTTCAA 51358 .......... .......... .......... .......... .......... .......... 514 AAACGTAGAA TTTATACGTT GAGTTAAGTT TCTTTGTATT TTGTGGAGTG GAGATGTAAA 51418 .......... .......... .......... .......... .......... .......... 514 TGACACCAAA TTTCATATTA TTGTAGTGTC CGGATAATGG TGTGATACTA TTCATCAACG 51478 .......... .......... .......... .......... .......... .......... 514 CCTATTTTAT ATAGAATGAT CACATAAGAA CATTGTTGGC CAGTCTTAGC TCACCACAAC 51538 .......... .......... .......... .......... .......... .......... 514 TATCTTTTTG CGCTTATGTC TAAGAGAAAT CCTTGGAAGA CATTTGTCTG ATAATCTTTA 51598 .......... .......... .......... .......... .......... .......... 514 TGTTTATTGT AGATTTTGGC ACCACTTCCT ATTGGATTCG CA 51640 |||||||| |||||||||| |||||||||| || .......... ..ATTTTGGC ACCACTTCCT ATTGGATTCG CA 544 hqPGS_C08SLe0084H03.1+_SGN-E275877+ (49199 49416,50285 50580,51611 51640) ******************************************************************************** EST sequence 13 +strand 567 n (File: SGN-E348828+) 1 GCATTGTTTG AACCCGGGGA GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG 61 TTCATGGCAA CTTTCTTGTT CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA 121 TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG 181 ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGAG GACACATCTA CAACGACGAG 241 CATGCATGGA ATGACCACTG GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT 301 GCTATTTACC ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT 361 CTTTAAACAA TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG 421 GTTGAATGTT CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCTGTTC CTTCTGTTAA 481 GATGTTCTAT TATGTGTGTA AATTATCAGG TTATGATAAT GTAATGTACC TTATCAATGA 541 AGGTTCTTTA TTTTTAAAAN AAAAAAA Predicted gene structure (within gDNA segment 48465 to 52889): Exon 1 49201 49416 ( 216 n); cDNA 2 217 ( 216 n); score: 0.995 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 0) Exon 2 50285 50292 ( 8 n); cDNA 218 225 ( 8 n); score: 1.000 Intron 2 50293 51718 (1426 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 51719 51751 ( 33 n); cDNA 226 258 ( 33 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 0), Pa: 0.991 (s: 1.00) Exon 4 51872 52177 ( 306 n); cDNA 259 564 ( 306 n); score: 0.980 MATCH C08SLe0084H03.1+ SGN-E348828+ 0.987 563 0.993 C PGS_C08SLe0084H03.1+_SGN-E348828+ (49201 49416,50285 50292,51719 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTTGA ACCCGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 61 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 121 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 181 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAGGTTG GTTTCATTGC CCCCCTTTTC 49440 |||||||||| |||||||||| |||||||||| |||||| TCTTTGCTTT GGTCTACTGT ACTGCTGGTA TCTCAG.... .......... .......... 217 ATTCTTGATG CTAAAGATTG TAACTTTACT TGTTTTACTT AAAGAGTGAG TTTGTGTTCA 49500 .......... .......... .......... .......... .......... .......... 217 TTTATTGTCT ACTGATTGCT TTTGTCAACT GGTTTTGTGG ATTGCTGAGT ATGTAGAAGG 49560 .......... .......... .......... .......... .......... .......... 217 TAAAGATTTG TTTTATTTTT ACTGGTTTAG AGGTTTGAAA CATGTTAACT GGTTTGTTTT 49620 .......... .......... .......... .......... .......... .......... 217 ATGTTTCTTG ATTTCTTTGA GTTGATTCCC TTCTTTTGCT TAAGATAGTT GAGCTTGTGT 49680 .......... .......... .......... .......... .......... .......... 217 TCACTTATTG TGTATATTTG TCGACTAATT TAATGGATTC TTGATCTTGA GTATAGTCAA 49740 .......... .......... .......... .......... .......... .......... 217 TTAAAGATTC ATTTTTCACT GTTTTTAAAG GTCCAAAACA TGTTACTGGT TTGATTTCTG 49800 .......... .......... .......... .......... .......... .......... 217 TGTCTGAGGT ACAAAAATGG AGTTTGGTGA AGCTTATTCC TTTACCTCTA TACTGTAAAA 49860 .......... .......... .......... .......... .......... .......... 217 ATATGACTTC TCTTTATTTT CCTTCGTTCA CTAATTTTGT ATCTCATACT TTTTACAACT 49920 .......... .......... .......... .......... .......... .......... 217 AATTTGATGG ATCCTTGAAG ATTCAACCTT TCTTTGTCTT GGAGGTTCAA AACATGTAAA 49980 .......... .......... .......... .......... .......... .......... 217 TGGTTTATTT TCTGAATCTT GTTACTTTAC CCTTTTTATA TAGCAAGTGT AACACTTTGT 50040 .......... .......... .......... .......... .......... .......... 217 GGCTTATTTC TTTGTTTGCT TGCTTTTGAT CACCATATTT GAGCTTTTAG TTACTTTATT 50100 .......... .......... .......... .......... .......... .......... 217 TGTACCATCA TACCTTTTTC AACTAATTAA TGGGATCTTG AGTATAATTC ACATAAGGGT 50160 .......... .......... .......... .......... .......... .......... 217 ATAGTTTTTT CCTGTTTTGA AGTTCAAAGC ATGTTACATA TTTTGTAAAA TGAGTCTTTT 50220 .......... .......... .......... .......... .......... .......... 217 CCTTCTTTGA ATAAGGGTTG GCTTGTTTCT CTGATGCTAA ATTCTGTGTT TTGATATCAA 50280 .......... .......... .......... .......... .......... .......... 217 ACAGGAGGAC ACATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG GAAATTGTCC 50340 |||||| || ....GAGGAC AC........ .......... .......... .......... .......... 225 TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG TGGTGCTGGT 50400 .......... .......... .......... .......... .......... .......... 225 GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC TAATGTTGTT 50460 .......... .......... .......... .......... .......... .......... 225 AACCCTGGAT ACACCAAGGG TGATGGCCTT GGTGCTGAAA TTATTGGCAC CTTTGTCCTT 50520 .......... .......... .......... .......... .......... .......... 225 GTTTACACTG TTTTTTCAGC CACTGATGCC AAGAGAAATG CCAGAGACTC ACATGTTCCT 50580 .......... .......... .......... .......... .......... .......... 225 GTAAGTGTTT TCCTCTTGTA GTTTTATTTC TTCTTTGTGA TATCAAGTTT GCTTATCATG 50640 .......... .......... .......... .......... .......... .......... 225 GATATTTACA TGTTAATTCT AAGCTAGAGT CTAACCAGAA ATTTTGGAAG TAGTTTCTGA 50700 .......... .......... .......... .......... .......... .......... 225 AAATTTATCA ATGATATATG TGACTTTACA TTACATAGTT TGACGATAAG TGAAGCGTGA 50760 .......... .......... .......... .......... .......... .......... 225 CAAGTAAAAA TGATCGTAGG GCCAACTTGT TACCCTACAT TGTCTGATGA GAAGTGAAAA 50820 .......... .......... .......... .......... .......... .......... 225 GTGACAAGTA AAAATGACCG TAGGGCCAAC TTGTTACCAT ACATAGTTTG ACGAGAAGTG 50880 .......... .......... .......... .......... .......... .......... 225 AAAAGTGATT TTATGACAAG TAAAAGTGAA CGGAGGGTAT TAAACAACCA ACTTGCTATA 50940 .......... .......... .......... .......... .......... .......... 225 ACATGTTAAA TTACTCTAGT AGGGTAAAAG TTCATTGTAC TGTTTAATGT ATGTAAAAAG 51000 .......... .......... .......... .......... .......... .......... 225 TTGAAATCTT GCAAGACAAG TGGGTCTTAC TTTTTGGTAA GTTAGGCAAA AATATTGTTC 51060 .......... .......... .......... .......... .......... .......... 225 ATGCTATAGC ATGTGGCATG TCTGGTTTTG TCAGCAAGTC CTTTTAGTTG GTGTAGGGTT 51120 .......... .......... .......... .......... .......... .......... 225 ATGTTGTGGG CCTAATTGAG TTAGGCTAAA GATAGTGATG TTCATGTGAT AAGTTATTGT 51180 .......... .......... .......... .......... .......... .......... 225 AACTGTGGAC TTTTTCTTGT CATGGAGTGG CTCGCCACGT CACAGTGTTG TGGACCTTTA 51240 .......... .......... .......... .......... .......... .......... 225 GGTCATCTCC GATCCATAAC ACCAACTTTT ATACTAAAAA CGTGTATCAA ATGCGCTACA 51300 .......... .......... .......... .......... .......... .......... 225 CTGATTGTTC GACATAATAT TATATAAAGA ATGATTTGGT ATATTAGGGA GTTTTCAAAA 51360 .......... .......... .......... .......... .......... .......... 225 ACGTAGAATT TATACGTTGA GTTAAGTTTC TTTGTATTTT GTGGAGTGGA GATGTAAATG 51420 .......... .......... .......... .......... .......... .......... 225 ACACCAAATT TCATATTATT GTAGTGTCCG GATAATGGTG TGATACTATT CATCAACGCC 51480 .......... .......... .......... .......... .......... .......... 225 TATTTTATAT AGAATGATCA CATAAGAACA TTGTTGGCCA GTCTTAGCTC ACCACAACTA 51540 .......... .......... .......... .......... .......... .......... 225 TCTTTTTGCG CTTATGTCTA AGAGAAATCC TTGGAAGACA TTTGTCTGAT AATCTTTATG 51600 .......... .......... .......... .......... .......... .......... 225 TTTATTGTAG ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC 51660 .......... .......... .......... .......... .......... .......... 225 CACCATCCCC ATCACCGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT 51720 || .......... .......... .......... .......... .......... ........AT 227 CTACAACGAC GAGCATGCAT GGAATGACCA CGTAAGAAAA ACATCTTTCA TTCTTTTAAA 51780 |||||||||| |||||||||| |||||||||| | CTACAACGAC GAGCATGCAT GGAATGACCA C......... .......... .......... 258 CTGACTCGAA CACCACAGTT ACTTGAACCA AAAAAAGGAG AGCTTAATCT AACAAAGGGG 51840 .......... .......... .......... .......... .......... .......... 258 TTCTTGTTTG TTTTTTGTTG TTTTTGAACA GTGGATCTTC TGGGTTGGAC CAATGATTGG 51900 ||||||||| |||||||||| |||||||||| .......... .......... .......... .TGGATCTTC TGGGTTGGAC CAATGATTGG 287 AGCTGCTCTT GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC 51960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCTCTT GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC 347 TTAAGTTATC TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT 52020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGTTATC TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT 407 CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG 52080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG 467 TTCCTTCTGT TAAGATGTTC TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT 52140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTCTGT TAAGATGTTC TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT 527 ACCTTATCAA TGAAGGTTCT TTATTTTTAT CTTTGAA 52177 |||||||||| |||||||||| ||||||||| || ACCTTATCAA TGAAGGTTCT TTATTTTTAA AANAAAA 564 hqPGS_C08SLe0084H03.1+_SGN-E348828+ (49201 49416,50285 50292,51719 51751,51872 52177) ******************************************************************************** EST sequence 85 +strand 517 n (File: SGN-E308480+) 1 GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT 61 CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC 121 AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG 181 TACTGCTGGT ATCTCAGGAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC 241 AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT 301 CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG 361 TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG 421 CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA 481 CTCACATGTT CCTATTTTGG CACCACTTCC TATTGGA Predicted gene structure (within gDNA segment 48620 to 51430): Exon 1 49220 49416 ( 197 n); cDNA 1 197 ( 197 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 198 493 ( 296 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E308480+ 1.000 493 0.954 C PGS_C08SLe0084H03.1+_SGN-E308480+ (49220 49416,50285 50580) Alignment (genomic DNA sequence = upper lines): GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT 49279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTCATCA TGGTCCTTTT ACAGGGCTGG TATTGCAGAG TTCATGGCAA CTTTCTTGTT 60 CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC 49339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTATATC ACAATCTTGA CTGTTATGGG TCTTAAGAGA TCTGATAGTT TATGTTCTTC 120 AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG 49399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGGTATT CAAGGGGTTG CTTGGGCTTT TGGTGGTATG ATCTTTGCTT TGGTCTACTG 180 TACTGCTGGT ATCTCAGGTT GGTTTCATTG CCCCCCTTTT CATTCTTGAT GCTAAAGATT 49459 |||||||||| ||||||| TACTGCTGGT ATCTCAG... .......... .......... .......... .......... 197 GTAACTTTAC TTGTTTTACT TAAAGAGTGA GTTTGTGTTC ATTTATTGTC TACTGATTGC 49519 .......... .......... .......... .......... .......... .......... 197 TTTTGTCAAC TGGTTTTGTG GATTGCTGAG TATGTAGAAG GTAAAGATTT GTTTTATTTT 49579 .......... .......... .......... .......... .......... .......... 197 TACTGGTTTA GAGGTTTGAA ACATGTTAAC TGGTTTGTTT TATGTTTCTT GATTTCTTTG 49639 .......... .......... .......... .......... .......... .......... 197 AGTTGATTCC CTTCTTTTGC TTAAGATAGT TGAGCTTGTG TTCACTTATT GTGTATATTT 49699 .......... .......... .......... .......... .......... .......... 197 GTCGACTAAT TTAATGGATT CTTGATCTTG AGTATAGTCA ATTAAAGATT CATTTTTCAC 49759 .......... .......... .......... .......... .......... .......... 197 TGTTTTTAAA GGTCCAAAAC ATGTTACTGG TTTGATTTCT GTGTCTGAGG TACAAAAATG 49819 .......... .......... .......... .......... .......... .......... 197 GAGTTTGGTG AAGCTTATTC CTTTACCTCT ATACTGTAAA AATATGACTT CTCTTTATTT 49879 .......... .......... .......... .......... .......... .......... 197 TCCTTCGTTC ACTAATTTTG TATCTCATAC TTTTTACAAC TAATTTGATG GATCCTTGAA 49939 .......... .......... .......... .......... .......... .......... 197 GATTCAACCT TTCTTTGTCT TGGAGGTTCA AAACATGTAA ATGGTTTATT TTCTGAATCT 49999 .......... .......... .......... .......... .......... .......... 197 TGTTACTTTA CCCTTTTTAT ATAGCAAGTG TAACACTTTG TGGCTTATTT CTTTGTTTGC 50059 .......... .......... .......... .......... .......... .......... 197 TTGCTTTTGA TCACCATATT TGAGCTTTTA GTTACTTTAT TTGTACCATC ATACCTTTTT 50119 .......... .......... .......... .......... .......... .......... 197 CAACTAATTA ATGGGATCTT GAGTATAATT CACATAAGGG TATAGTTTTT TCCTGTTTTG 50179 .......... .......... .......... .......... .......... .......... 197 AAGTTCAAAG CATGTTACAT ATTTTGTAAA ATGAGTCTTT TCCTTCTTTG AATAAGGGTT 50239 .......... .......... .......... .......... .......... .......... 197 GGCTTGTTTC TCTGATGCTA AATTCTGTGT TTTGATATCA AACAGGAGGA CACATCAACC 50299 ||||| |||||||||| .......... .......... .......... .......... .....GAGGA CACATCAACC 212 CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT 50359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA GGAAATTGTC CTTGACCAGG GCTGTTTTCT 272 ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG TGTTGTGAAG GGCTTCATGG 50419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGGTGAT GCAGTGCCTT GGTGCAATCT GTGGTGCTGG TGTTGTGAAG GGCTTCATGG 332 TAGGACCATA CCAAAGACTT GGTGGTGGTG CTAATGTTGT TAACCCTGGA TACACCAAGG 50479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGACCATA CCAAAGACTT GGTGGTGGTG CTAATGTTGT TAACCCTGGA TACACCAAGG 392 GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT TGTTTACACT GTTTTTTCAG 50539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT TGTTTACACT GTTTTTTCAG 452 CCACTGATGC CAAGAGAAAT GCCAGAGACT CACATGTTCC T 50580 |||||||||| |||||||||| |||||||||| |||||||||| | CCACTGATGC CAAGAGAAAT GCCAGAGACT CACATGTTCC T 493 hqPGS_C08SLe0084H03.1+_SGN-E308480+ (49220 49416,50285 50580) ******************************************************************************** EST sequence 43 +strand 539 n (File: SGN-E295806+) 1 GGAATTGCTG AGTTTATGGC TACTTTCTTG TTTTTGTACA TAACAATCTT GACTGTTATG 61 GGGCTTAAAA GGTCTGATAG TTTGTGTTCT TCTGTGGGTG TTCAAGGAGT TGCTTGGGCT 121 TTTGGTGGTA TGATCTTTGC TTTGGTTTAC TGTACTGCTG GTATCTCAGG AGGACACATT 181 AATCCAGCTG TGACATTTGG TTTGTTCTTG GCAAGGAAGT TGTCATTAAC AAGGGCAGTG 241 TTTTATATAG TGATGCAGTG TCTTGGTGCT ATCTGTGGTG CTGGTGTTGT GAAGGGTTTT 301 ATGGTTGGAC CCTATGAGAG ACTTGGTGGT GGTGCTAATG TTGTTAATCC TGGTTACACC 361 AAAGGTGATG GACTTGGTGC TGAGATTATT GGTACTTTTG TCCTTGTTTA CACTGTTTTC 421 TCTGCCACTG ATGCCAAAAG AAGTGCTAGA GACTCACATG TTCCTATTTT GGCACCTCTT 481 CCAATTGGAT TCGCGGTGTT CTTGGTTCAT TTGGCTACCA TTCCAATCAC CGGAACTGG Predicted gene structure (within gDNA segment 47676 to 53717): Exon 1 49248 49416 ( 169 n); cDNA 1 169 ( 169 n); score: 0.911 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.98), Pa: 0.992 (s: 0.88) Exon 2 50285 50580 ( 296 n); cDNA 170 465 ( 296 n); score: 0.882 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 0.90), Pa: 0.980 (s: 0.94) Exon 3 51611 51684 ( 74 n); cDNA 466 539 ( 74 n); score: 0.919 MATCH C08SLe0084H03.1+ SGN-E295806+ 0.896 539 1.000 C PGS_C08SLe0084H03.1+_SGN-E295806+ (49248 49416,50285 50580,51611 51684) Alignment (genomic DNA sequence = upper lines): GGTATTGCAG AGTTCATGGC AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG 49307 || ||||| | |||| ||||| ||||||||| || ||||| | | |||||||| |||||||||| GGAATTGCTG AGTTTATGGC TACTTTCTTG TTTTTGTACA TAACAATCTT GACTGTTATG 60 GGTCTTAAGA GATCTGATAG TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT 49367 || ||||| | | |||||||| ||| |||||| || |||||| ||||||| || |||||||||| GGGCTTAAAA GGTCTGATAG TTTGTGTTCT TCTGTGGGTG TTCAAGGAGT TGCTTGGGCT 120 TTTGGTGGTA TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT 49427 |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||| TTTGGTGGTA TGATCTTTGC TTTGGTTTAC TGTACTGCTG GTATCTCAG. .......... 169 TGCCCCCCTT TTCATTCTTG ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT 49487 .......... .......... .......... .......... .......... .......... 169 GAGTTTGTGT TCATTTATTG TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG 49547 .......... .......... .......... .......... .......... .......... 169 AGTATGTAGA AGGTAAAGAT TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA 49607 .......... .......... .......... .......... .......... .......... 169 ACTGGTTTGT TTTATGTTTC TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA 49667 .......... .......... .......... .......... .......... .......... 169 GTTGAGCTTG TGTTCACTTA TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT 49727 .......... .......... .......... .......... .......... .......... 169 TGAGTATAGT CAATTAAAGA TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT 49787 .......... .......... .......... .......... .......... .......... 169 GGTTTGATTT CTGTGTCTGA GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT 49847 .......... .......... .......... .......... .......... .......... 169 CTATACTGTA AAAATATGAC TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT 49907 .......... .......... .......... .......... .......... .......... 169 ACTTTTTACA ACTAATTTGA TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT 49967 .......... .......... .......... .......... .......... .......... 169 CAAAACATGT AAATGGTTTA TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG 50027 .......... .......... .......... .......... .......... .......... 169 TGTAACACTT TGTGGCTTAT TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT 50087 .......... .......... .......... .......... .......... .......... 169 TAGTTACTTT ATTTGTACCA TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA 50147 .......... .......... .......... .......... .......... .......... 169 TTCACATAAG GGTATAGTTT TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA 50207 .......... .......... .......... .......... .......... .......... 169 AAATGAGTCT TTTCCTTCTT TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT 50267 .......... .......... .......... .......... .......... .......... 169 GTTTTGATAT CAAACAGGAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC 50327 ||| ||||||| || ||||||||| || |||||| | |||||||| .......... .......GAG GACACATTAA TCCAGCTGTG ACATTTGGTT TGTTCTTGGC 212 AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT 50387 |||||| ||| || || || | |||| || || || || ||| |||||||| | ||||||| || AAGGAAGTTG TCATTAACAA GGGCAGTGTT TTATATAGTG ATGCAGTGTC TTGGTGCTAT 272 CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG 50447 |||||||||| |||||||||| |||| || || ||| ||||| || | |||| |||||||||| CTGTGGTGCT GGTGTTGTGA AGGGTTTTAT GGTTGGACCC TATGAGAGAC TTGGTGGTGG 332 TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG 50507 |||||||||| ||||| |||| | |||||||| |||||||| |||||||||| | |||||||| TGCTAATGTT GTTAATCCTG GTTACACCAA AGGTGATGGA CTTGGTGCTG AGATTATTGG 392 CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA 50567 || |||||| |||||||||| ||||||| || ||||||||| ||||| |||| ||| ||||| TACTTTTGTC CTTGTTTACA CTGTTTTCTC TGCCACTGAT GCCAAAAGAA GTGCTAGAGA 452 CTCACATGTT CCTGTAAGTG TTTTCCTCTT GTAGTTTTAT TTCTTCTTTG TGATATCAAG 50627 |||||||||| ||| CTCACATGTT CCT....... .......... .......... .......... .......... 465 TTTGCTTATC ATGGATATTT ACATGTTAAT TCTAAGCTAG AGTCTAACCA GAAATTTTGG 50687 .......... .......... .......... .......... .......... .......... 465 AAGTAGTTTC TGAAAATTTA TCAATGATAT ATGTGACTTT ACATTACATA GTTTGACGAT 50747 .......... .......... .......... .......... .......... .......... 465 AAGTGAAGCG TGACAAGTAA AAATGATCGT AGGGCCAACT TGTTACCCTA CATTGTCTGA 50807 .......... .......... .......... .......... .......... .......... 465 TGAGAAGTGA AAAGTGACAA GTAAAAATGA CCGTAGGGCC AACTTGTTAC CATACATAGT 50867 .......... .......... .......... .......... .......... .......... 465 TTGACGAGAA GTGAAAAGTG ATTTTATGAC AAGTAAAAGT GAACGGAGGG TATTAAACAA 50927 .......... .......... .......... .......... .......... .......... 465 CCAACTTGCT ATAACATGTT AAATTACTCT AGTAGGGTAA AAGTTCATTG TACTGTTTAA 50987 .......... .......... .......... .......... .......... .......... 465 TGTATGTAAA AAGTTGAAAT CTTGCAAGAC AAGTGGGTCT TACTTTTTGG TAAGTTAGGC 51047 .......... .......... .......... .......... .......... .......... 465 AAAAATATTG TTCATGCTAT AGCATGTGGC ATGTCTGGTT TTGTCAGCAA GTCCTTTTAG 51107 .......... .......... .......... .......... .......... .......... 465 TTGGTGTAGG GTTATGTTGT GGGCCTAATT GAGTTAGGCT AAAGATAGTG ATGTTCATGT 51167 .......... .......... .......... .......... .......... .......... 465 GATAAGTTAT TGTAACTGTG GACTTTTTCT TGTCATGGAG TGGCTCGCCA CGTCACAGTG 51227 .......... .......... .......... .......... .......... .......... 465 TTGTGGACCT TTAGGTCATC TCCGATCCAT AACACCAACT TTTATACTAA AAACGTGTAT 51287 .......... .......... .......... .......... .......... .......... 465 CAAATGCGCT ACACTGATTG TTCGACATAA TATTATATAA AGAATGATTT GGTATATTAG 51347 .......... .......... .......... .......... .......... .......... 465 GGAGTTTTCA AAAACGTAGA ATTTATACGT TGAGTTAAGT TTCTTTGTAT TTTGTGGAGT 51407 .......... .......... .......... .......... .......... .......... 465 GGAGATGTAA ATGACACCAA ATTTCATATT ATTGTAGTGT CCGGATAATG GTGTGATACT 51467 .......... .......... .......... .......... .......... .......... 465 ATTCATCAAC GCCTATTTTA TATAGAATGA TCACATAAGA ACATTGTTGG CCAGTCTTAG 51527 .......... .......... .......... .......... .......... .......... 465 CTCACCACAA CTATCTTTTT GCGCTTATGT CTAAGAGAAA TCCTTGGAAG ACATTTGTCT 51587 .......... .......... .......... .......... .......... .......... 465 GATAATCTTT ATGTTTATTG TAGATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT 51647 ||||||| |||| ||||| ||||||||| || ||||||| .......... .......... ...ATTTTGG CACCTCTTCC AATTGGATTC GCGGTGTTCT 502 TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGG 51684 |||||||||| ||| ||||| || ||||||| ||||||| TGGTTCATTT GGCTACCATT CCAATCACCG GAACTGG 539 hqPGS_C08SLe0084H03.1+_SGN-E295806+ (49248 49416,50285 50580,51611 51684) ******************************************************************************** EST sequence 8 +strand 455 n (File: SGN-E228188+) 1 GCAACTTTCT TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT 61 AGTTTATGTT CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT 121 GCTTTGGTCT ACTGTACTGC TGGTATCTCA GGAGGACACA TCAACCCAGC TGTGACCTTT 181 GGTCTTTTCT TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG 241 TGCCTTGGTG CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG ACCATACCAA 301 AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT 361 GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGATGCCAAG 421 AGAAATGCCA AAGACTCACA TGTTCCTATT TTGGC Predicted gene structure (within gDNA segment 48666 to 51270): Exon 1 49266 49416 ( 151 n); cDNA 1 151 ( 151 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 152 447 ( 296 n); score: 0.997 MATCH C08SLe0084H03.1+ SGN-E228188+ 0.998 447 0.982 C PGS_C08SLe0084H03.1+_SGN-E228188+ (49266 49416,50285 50580) Alignment (genomic DNA sequence = upper lines): GCAACTTTCT TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT 49325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACTTTCT TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT 60 AGTTTATGTT CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT 49385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTATGTT CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT 120 GCTTTGGTCT ACTGTACTGC TGGTATCTCA GGTTGGTTTC ATTGCCCCCC TTTTCATTCT 49445 |||||||||| |||||||||| |||||||||| | GCTTTGGTCT ACTGTACTGC TGGTATCTCA G......... .......... .......... 151 TGATGCTAAA GATTGTAACT TTACTTGTTT TACTTAAAGA GTGAGTTTGT GTTCATTTAT 49505 .......... .......... .......... .......... .......... .......... 151 TGTCTACTGA TTGCTTTTGT CAACTGGTTT TGTGGATTGC TGAGTATGTA GAAGGTAAAG 49565 .......... .......... .......... .......... .......... .......... 151 ATTTGTTTTA TTTTTACTGG TTTAGAGGTT TGAAACATGT TAACTGGTTT GTTTTATGTT 49625 .......... .......... .......... .......... .......... .......... 151 TCTTGATTTC TTTGAGTTGA TTCCCTTCTT TTGCTTAAGA TAGTTGAGCT TGTGTTCACT 49685 .......... .......... .......... .......... .......... .......... 151 TATTGTGTAT ATTTGTCGAC TAATTTAATG GATTCTTGAT CTTGAGTATA GTCAATTAAA 49745 .......... .......... .......... .......... .......... .......... 151 GATTCATTTT TCACTGTTTT TAAAGGTCCA AAACATGTTA CTGGTTTGAT TTCTGTGTCT 49805 .......... .......... .......... .......... .......... .......... 151 GAGGTACAAA AATGGAGTTT GGTGAAGCTT ATTCCTTTAC CTCTATACTG TAAAAATATG 49865 .......... .......... .......... .......... .......... .......... 151 ACTTCTCTTT ATTTTCCTTC GTTCACTAAT TTTGTATCTC ATACTTTTTA CAACTAATTT 49925 .......... .......... .......... .......... .......... .......... 151 GATGGATCCT TGAAGATTCA ACCTTTCTTT GTCTTGGAGG TTCAAAACAT GTAAATGGTT 49985 .......... .......... .......... .......... .......... .......... 151 TATTTTCTGA ATCTTGTTAC TTTACCCTTT TTATATAGCA AGTGTAACAC TTTGTGGCTT 50045 .......... .......... .......... .......... .......... .......... 151 ATTTCTTTGT TTGCTTGCTT TTGATCACCA TATTTGAGCT TTTAGTTACT TTATTTGTAC 50105 .......... .......... .......... .......... .......... .......... 151 CATCATACCT TTTTCAACTA ATTAATGGGA TCTTGAGTAT AATTCACATA AGGGTATAGT 50165 .......... .......... .......... .......... .......... .......... 151 TTTTTCCTGT TTTGAAGTTC AAAGCATGTT ACATATTTTG TAAAATGAGT CTTTTCCTTC 50225 .......... .......... .......... .......... .......... .......... 151 TTTGAATAAG GGTTGGCTTG TTTCTCTGAT GCTAAATTCT GTGTTTTGAT ATCAAACAGG 50285 | .......... .......... .......... .......... .......... .........G 152 AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC 50345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC 212 CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT 50405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT 272 GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC 50465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC 332 TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA 50525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA 392 CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCT 50580 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ||||| CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAAA GACTCACATG TTCCT 447 hqPGS_C08SLe0084H03.1+_SGN-E228188+ (49266 49416,50285 50580) ******************************************************************************** EST sequence 140 +strand 523 n (File: SGN-E331039+) 1 AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG 61 TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC 121 TTTGGTCTAC TGTACTGCTG GTATCTCAGG AGGACACATC AACCCAGCTG TGACCTTTGG 181 TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG TGATGCAGTG 241 CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC CATACCAAAG 301 ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC 361 TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG 421 AAATGCCAGA GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT 481 CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATC Predicted gene structure (within gDNA segment 48668 to 52298): Exon 1 49268 49416 ( 149 n); cDNA 1 149 ( 149 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 150 445 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51688 ( 78 n); cDNA 446 523 ( 78 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E331039+ 1.000 523 1.000 C PGS_C08SLe0084H03.1+_SGN-E331039+ (49268 49416,50285 50580,51611 51688) Alignment (genomic DNA sequence = upper lines): AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG 49327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG 60 TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC 49387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC 120 TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG 49447 |||||||||| |||||||||| ||||||||| TTTGGTCTAC TGTACTGCTG GTATCTCAG. .......... .......... .......... 149 ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG 49507 .......... .......... .......... .......... .......... .......... 149 TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT 49567 .......... .......... .......... .......... .......... .......... 149 TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC 49627 .......... .......... .......... .......... .......... .......... 149 TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA 49687 .......... .......... .......... .......... .......... .......... 149 TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA 49747 .......... .......... .......... .......... .......... .......... 149 TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA 49807 .......... .......... .......... .......... .......... .......... 149 GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC 49867 .......... .......... .......... .......... .......... .......... 149 TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA 49927 .......... .......... .......... .......... .......... .......... 149 TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA 49987 .......... .......... .......... .......... .......... .......... 149 TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT 50047 .......... .......... .......... .......... .......... .......... 149 TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA 50107 .......... .......... .......... .......... .......... .......... 149 TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT 50167 .......... .......... .......... .......... .......... .......... 149 TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT 50227 .......... .......... .......... .......... .......... .......... 149 TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG 50287 ||| .......... .......... .......... .......... .......... .......GAG 152 GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 50347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 212 GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 50407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 272 AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 50467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 332 GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA 50527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA 392 CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTGTAAGTG 50587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCT....... 445 TTTTCCTCTT GTAGTTTTAT TTCTTCTTTG TGATATCAAG TTTGCTTATC ATGGATATTT 50647 .......... .......... .......... .......... .......... .......... 445 ACATGTTAAT TCTAAGCTAG AGTCTAACCA GAAATTTTGG AAGTAGTTTC TGAAAATTTA 50707 .......... .......... .......... .......... .......... .......... 445 TCAATGATAT ATGTGACTTT ACATTACATA GTTTGACGAT AAGTGAAGCG TGACAAGTAA 50767 .......... .......... .......... .......... .......... .......... 445 AAATGATCGT AGGGCCAACT TGTTACCCTA CATTGTCTGA TGAGAAGTGA AAAGTGACAA 50827 .......... .......... .......... .......... .......... .......... 445 GTAAAAATGA CCGTAGGGCC AACTTGTTAC CATACATAGT TTGACGAGAA GTGAAAAGTG 50887 .......... .......... .......... .......... .......... .......... 445 ATTTTATGAC AAGTAAAAGT GAACGGAGGG TATTAAACAA CCAACTTGCT ATAACATGTT 50947 .......... .......... .......... .......... .......... .......... 445 AAATTACTCT AGTAGGGTAA AAGTTCATTG TACTGTTTAA TGTATGTAAA AAGTTGAAAT 51007 .......... .......... .......... .......... .......... .......... 445 CTTGCAAGAC AAGTGGGTCT TACTTTTTGG TAAGTTAGGC AAAAATATTG TTCATGCTAT 51067 .......... .......... .......... .......... .......... .......... 445 AGCATGTGGC ATGTCTGGTT TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG GTTATGTTGT 51127 .......... .......... .......... .......... .......... .......... 445 GGGCCTAATT GAGTTAGGCT AAAGATAGTG ATGTTCATGT GATAAGTTAT TGTAACTGTG 51187 .......... .......... .......... .......... .......... .......... 445 GACTTTTTCT TGTCATGGAG TGGCTCGCCA CGTCACAGTG TTGTGGACCT TTAGGTCATC 51247 .......... .......... .......... .......... .......... .......... 445 TCCGATCCAT AACACCAACT TTTATACTAA AAACGTGTAT CAAATGCGCT ACACTGATTG 51307 .......... .......... .......... .......... .......... .......... 445 TTCGACATAA TATTATATAA AGAATGATTT GGTATATTAG GGAGTTTTCA AAAACGTAGA 51367 .......... .......... .......... .......... .......... .......... 445 ATTTATACGT TGAGTTAAGT TTCTTTGTAT TTTGTGGAGT GGAGATGTAA ATGACACCAA 51427 .......... .......... .......... .......... .......... .......... 445 ATTTCATATT ATTGTAGTGT CCGGATAATG GTGTGATACT ATTCATCAAC GCCTATTTTA 51487 .......... .......... .......... .......... .......... .......... 445 TATAGAATGA TCACATAAGA ACATTGTTGG CCAGTCTTAG CTCACCACAA CTATCTTTTT 51547 .......... .......... .......... .......... .......... .......... 445 GCGCTTATGT CTAAGAGAAA TCCTTGGAAG ACATTTGTCT GATAATCTTT ATGTTTATTG 51607 .......... .......... .......... .......... .......... .......... 445 TAGATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC 51667 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC 502 CCCATCACCG GAACTGGCAT C 51688 |||||||||| |||||||||| | CCCATCACCG GAACTGGCAT C 523 hqPGS_C08SLe0084H03.1+_SGN-E331039+ (49268 49416,50285 50580,51611 51688) ******************************************************************************** EST sequence 117 +strand 392 n (File: SGN-E258081+) 1 TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT 61 CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT GCTTTGGTCT 121 ACTGTACTGC TGGTATCTCA GGAGGACACA TCAACCCAGC TGTGACCTTT GGTCTTTTCT 181 TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG 241 CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG ACCATACCAA AGACTTGGTG 301 GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAANGGTGA TGGCCTTGGT GCTGAAATTA 361 TTGGCACCTT TGTCCTTGTT TACACTGTTT TT Predicted gene structure (within gDNA segment 48676 to 51145): Exon 1 49276 49416 ( 141 n); cDNA 1 141 ( 141 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50535 ( 251 n); cDNA 142 392 ( 251 n); score: 0.996 MATCH C08SLe0084H03.1+ SGN-E258081+ 0.997 392 1.000 C PGS_C08SLe0084H03.1+_SGN-E258081+ (49276 49416,50285 50535) Alignment (genomic DNA sequence = upper lines): TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT 49335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCTTGTA TATCACAATC TTGACTGTTA TGGGTCTTAA GAGATCTGAT AGTTTATGTT 60 CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT GCTTTGGTCT 49395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT GCTTTGGTCT 120 ACTGTACTGC TGGTATCTCA GGTTGGTTTC ATTGCCCCCC TTTTCATTCT TGATGCTAAA 49455 |||||||||| |||||||||| | ACTGTACTGC TGGTATCTCA G......... .......... .......... .......... 141 GATTGTAACT TTACTTGTTT TACTTAAAGA GTGAGTTTGT GTTCATTTAT TGTCTACTGA 49515 .......... .......... .......... .......... .......... .......... 141 TTGCTTTTGT CAACTGGTTT TGTGGATTGC TGAGTATGTA GAAGGTAAAG ATTTGTTTTA 49575 .......... .......... .......... .......... .......... .......... 141 TTTTTACTGG TTTAGAGGTT TGAAACATGT TAACTGGTTT GTTTTATGTT TCTTGATTTC 49635 .......... .......... .......... .......... .......... .......... 141 TTTGAGTTGA TTCCCTTCTT TTGCTTAAGA TAGTTGAGCT TGTGTTCACT TATTGTGTAT 49695 .......... .......... .......... .......... .......... .......... 141 ATTTGTCGAC TAATTTAATG GATTCTTGAT CTTGAGTATA GTCAATTAAA GATTCATTTT 49755 .......... .......... .......... .......... .......... .......... 141 TCACTGTTTT TAAAGGTCCA AAACATGTTA CTGGTTTGAT TTCTGTGTCT GAGGTACAAA 49815 .......... .......... .......... .......... .......... .......... 141 AATGGAGTTT GGTGAAGCTT ATTCCTTTAC CTCTATACTG TAAAAATATG ACTTCTCTTT 49875 .......... .......... .......... .......... .......... .......... 141 ATTTTCCTTC GTTCACTAAT TTTGTATCTC ATACTTTTTA CAACTAATTT GATGGATCCT 49935 .......... .......... .......... .......... .......... .......... 141 TGAAGATTCA ACCTTTCTTT GTCTTGGAGG TTCAAAACAT GTAAATGGTT TATTTTCTGA 49995 .......... .......... .......... .......... .......... .......... 141 ATCTTGTTAC TTTACCCTTT TTATATAGCA AGTGTAACAC TTTGTGGCTT ATTTCTTTGT 50055 .......... .......... .......... .......... .......... .......... 141 TTGCTTGCTT TTGATCACCA TATTTGAGCT TTTAGTTACT TTATTTGTAC CATCATACCT 50115 .......... .......... .......... .......... .......... .......... 141 TTTTCAACTA ATTAATGGGA TCTTGAGTAT AATTCACATA AGGGTATAGT TTTTTCCTGT 50175 .......... .......... .......... .......... .......... .......... 141 TTTGAAGTTC AAAGCATGTT ACATATTTTG TAAAATGAGT CTTTTCCTTC TTTGAATAAG 50235 .......... .......... .......... .......... .......... .......... 141 GGTTGGCTTG TTTCTCTGAT GCTAAATTCT GTGTTTTGAT ATCAAACAGG AGGACACATC 50295 | |||||||||| .......... .......... .......... .......... .........G AGGACACATC 152 AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT 50355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT 212 TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC 50415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC 272 ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC 50475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC 332 AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT 50535 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AANGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT 392 hqPGS_C08SLe0084H03.1+_SGN-E258081+ (49276 49416,50285 50535) ******************************************************************************** EST sequence 11 +strand 551 n (File: SGN-E304983+) 1 TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT 61 TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGAG GACACATCAA 121 CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT 181 CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT 241 GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA 301 GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC 361 AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTATTTTGG CACCACTTCC 421 TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT 481 CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA 541 CCACTGGATC T Predicted gene structure (within gDNA segment 48710 to 52431): Exon 1 49310 49416 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 108 403 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 404 544 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 0) Exon 4 51872 51878 ( 7 n); cDNA 545 551 ( 7 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E304983+ 1.000 551 1.000 C PGS_C08SLe0084H03.1+_SGN-E304983+ (49310 49416,50285 50580,51611 51751,51872 51878) Alignment (genomic DNA sequence = upper lines): TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT 49369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAAGAGA TCTGATAGTT TATGTTCTTC AGTGGGTATT CAAGGGGTTG CTTGGGCTTT 60 TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAGGTT GGTTTCATTG 49429 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGGTGGTATG ATCTTTGCTT TGGTCTACTG TACTGCTGGT ATCTCAG... .......... 107 CCCCCCTTTT CATTCTTGAT GCTAAAGATT GTAACTTTAC TTGTTTTACT TAAAGAGTGA 49489 .......... .......... .......... .......... .......... .......... 107 GTTTGTGTTC ATTTATTGTC TACTGATTGC TTTTGTCAAC TGGTTTTGTG GATTGCTGAG 49549 .......... .......... .......... .......... .......... .......... 107 TATGTAGAAG GTAAAGATTT GTTTTATTTT TACTGGTTTA GAGGTTTGAA ACATGTTAAC 49609 .......... .......... .......... .......... .......... .......... 107 TGGTTTGTTT TATGTTTCTT GATTTCTTTG AGTTGATTCC CTTCTTTTGC TTAAGATAGT 49669 .......... .......... .......... .......... .......... .......... 107 TGAGCTTGTG TTCACTTATT GTGTATATTT GTCGACTAAT TTAATGGATT CTTGATCTTG 49729 .......... .......... .......... .......... .......... .......... 107 AGTATAGTCA ATTAAAGATT CATTTTTCAC TGTTTTTAAA GGTCCAAAAC ATGTTACTGG 49789 .......... .......... .......... .......... .......... .......... 107 TTTGATTTCT GTGTCTGAGG TACAAAAATG GAGTTTGGTG AAGCTTATTC CTTTACCTCT 49849 .......... .......... .......... .......... .......... .......... 107 ATACTGTAAA AATATGACTT CTCTTTATTT TCCTTCGTTC ACTAATTTTG TATCTCATAC 49909 .......... .......... .......... .......... .......... .......... 107 TTTTTACAAC TAATTTGATG GATCCTTGAA GATTCAACCT TTCTTTGTCT TGGAGGTTCA 49969 .......... .......... .......... .......... .......... .......... 107 AAACATGTAA ATGGTTTATT TTCTGAATCT TGTTACTTTA CCCTTTTTAT ATAGCAAGTG 50029 .......... .......... .......... .......... .......... .......... 107 TAACACTTTG TGGCTTATTT CTTTGTTTGC TTGCTTTTGA TCACCATATT TGAGCTTTTA 50089 .......... .......... .......... .......... .......... .......... 107 GTTACTTTAT TTGTACCATC ATACCTTTTT CAACTAATTA ATGGGATCTT GAGTATAATT 50149 .......... .......... .......... .......... .......... .......... 107 CACATAAGGG TATAGTTTTT TCCTGTTTTG AAGTTCAAAG CATGTTACAT ATTTTGTAAA 50209 .......... .......... .......... .......... .......... .......... 107 ATGAGTCTTT TCCTTCTTTG AATAAGGGTT GGCTTGTTTC TCTGATGCTA AATTCTGTGT 50269 .......... .......... .......... .......... .......... .......... 107 TTTGATATCA AACAGGAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA 50329 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GAGGA CACATCAACC CAGCTGTGAC CTTTGGTCTT TTCTTGGCAA 152 GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT 50389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAATTGTC CTTGACCAGG GCTGTTTTCT ACATGGTGAT GCAGTGCCTT GGTGCAATCT 212 GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT GGTGGTGGTG 50449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGCTGG TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT GGTGGTGGTG 272 CTAATGTTGT TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA 50509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATGTTGT TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA 332 CCTTTGTCCT TGTTTACACT GTTTTTTCAG CCACTGATGC CAAGAGAAAT GCCAGAGACT 50569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTGTCCT TGTTTACACT GTTTTTTCAG CCACTGATGC CAAGAGAAAT GCCAGAGACT 392 CACATGTTCC TGTAAGTGTT TTCCTCTTGT AGTTTTATTT CTTCTTTGTG ATATCAAGTT 50629 |||||||||| | CACATGTTCC T......... .......... .......... .......... .......... 403 TGCTTATCAT GGATATTTAC ATGTTAATTC TAAGCTAGAG TCTAACCAGA AATTTTGGAA 50689 .......... .......... .......... .......... .......... .......... 403 GTAGTTTCTG AAAATTTATC AATGATATAT GTGACTTTAC ATTACATAGT TTGACGATAA 50749 .......... .......... .......... .......... .......... .......... 403 GTGAAGCGTG ACAAGTAAAA ATGATCGTAG GGCCAACTTG TTACCCTACA TTGTCTGATG 50809 .......... .......... .......... .......... .......... .......... 403 AGAAGTGAAA AGTGACAAGT AAAAATGACC GTAGGGCCAA CTTGTTACCA TACATAGTTT 50869 .......... .......... .......... .......... .......... .......... 403 GACGAGAAGT GAAAAGTGAT TTTATGACAA GTAAAAGTGA ACGGAGGGTA TTAAACAACC 50929 .......... .......... .......... .......... .......... .......... 403 AACTTGCTAT AACATGTTAA ATTACTCTAG TAGGGTAAAA GTTCATTGTA CTGTTTAATG 50989 .......... .......... .......... .......... .......... .......... 403 TATGTAAAAA GTTGAAATCT TGCAAGACAA GTGGGTCTTA CTTTTTGGTA AGTTAGGCAA 51049 .......... .......... .......... .......... .......... .......... 403 AAATATTGTT CATGCTATAG CATGTGGCAT GTCTGGTTTT GTCAGCAAGT CCTTTTAGTT 51109 .......... .......... .......... .......... .......... .......... 403 GGTGTAGGGT TATGTTGTGG GCCTAATTGA GTTAGGCTAA AGATAGTGAT GTTCATGTGA 51169 .......... .......... .......... .......... .......... .......... 403 TAAGTTATTG TAACTGTGGA CTTTTTCTTG TCATGGAGTG GCTCGCCACG TCACAGTGTT 51229 .......... .......... .......... .......... .......... .......... 403 GTGGACCTTT AGGTCATCTC CGATCCATAA CACCAACTTT TATACTAAAA ACGTGTATCA 51289 .......... .......... .......... .......... .......... .......... 403 AATGCGCTAC ACTGATTGTT CGACATAATA TTATATAAAG AATGATTTGG TATATTAGGG 51349 .......... .......... .......... .......... .......... .......... 403 AGTTTTCAAA AACGTAGAAT TTATACGTTG AGTTAAGTTT CTTTGTATTT TGTGGAGTGG 51409 .......... .......... .......... .......... .......... .......... 403 AGATGTAAAT GACACCAAAT TTCATATTAT TGTAGTGTCC GGATAATGGT GTGATACTAT 51469 .......... .......... .......... .......... .......... .......... 403 TCATCAACGC CTATTTTATA TAGAATGATC ACATAAGAAC ATTGTTGGCC AGTCTTAGCT 51529 .......... .......... .......... .......... .......... .......... 403 CACCACAACT ATCTTTTTGC GCTTATGTCT AAGAGAAATC CTTGGAAGAC ATTTGTCTGA 51589 .......... .......... .......... .......... .......... .......... 403 TAATCTTTAT GTTTATTGTA GATTTTGGCA CCACTTCCTA TTGGATTCGC AGTGTTCTTG 51649 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .ATTTTGGCA CCACTTCCTA TTGGATTCGC AGTGTTCTTG 442 GTTCATTTGG CCACCATCCC CATCACCGGA ACTGGCATCA ACCCCGCCAG GAGTCTTGGA 51709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCATTTGG CCACCATCCC CATCACCGGA ACTGGCATCA ACCCCGCCAG GAGTCTTGGA 502 GCTGCTATCA TCTACAACGA CGAGCATGCA TGGAATGACC ACGTAAGAAA AACATCTTTC 51769 |||||||||| |||||||||| |||||||||| |||||||||| || GCTGCTATCA TCTACAACGA CGAGCATGCA TGGAATGACC AC........ .......... 544 ATTCTTTTAA ACTGACTCGA ACACCACAGT TACTTGAACC AAAAAAAGGA GAGCTTAATC 51829 .......... .......... .......... .......... .......... .......... 544 TAACAAAGGG GTTCTTGTTT GTTTTTTGTT GTTTTTGAAC AGTGGATCT 51878 ||||||| .......... .......... .......... .......... ..TGGATCT 551 hqPGS_C08SLe0084H03.1+_SGN-E304983+ (49310 49416,50285 50580,51611 51751,51872 51878) ******************************************************************************** EST sequence 108 +strand 208 n (File: SGN-E237795+) 1 GCTGCAGGTA GTTTATGTTT TTCAGTGGGT ATTCAAGGGG TTGCTTGGTC TTTTGGTGGT 61 ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG GAGGACACAT CAACCCAGCT 121 GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGCCCTTGA CCAGGGCTGT TTTCTACATG 181 GAGATGCAGT GCCTTGGTGC AATCTGTG Predicted gene structure (within gDNA segment 48537 to 51002): Exon 1 49325 49416 ( 92 n); cDNA 9 100 ( 92 n); score: 0.978 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50392 ( 108 n); cDNA 101 208 ( 108 n); score: 0.981 MATCH C08SLe0084H03.1+ SGN-E237795+ 0.980 200 0.962 C PGS_C08SLe0084H03.1+_SGN-E237795+ (49325 49416,50285 50392) Alignment (genomic DNA sequence = upper lines): TAGTTTATGT TCTTCAGTGG GTATTCAAGG GGTTGCTTGG GCTTTTGGTG GTATGATCTT 49384 |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||||||| TAGTTTATGT TTTTCAGTGG GTATTCAAGG GGTTGCTTGG TCTTTTGGTG GTATGATCTT 68 TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGTTGGTTT CATTGCCCCC CTTTTCATTC 49444 |||||||||| |||||||||| |||||||||| || TGCTTTGGTC TACTGTACTG CTGGTATCTC AG........ .......... .......... 100 TTGATGCTAA AGATTGTAAC TTTACTTGTT TTACTTAAAG AGTGAGTTTG TGTTCATTTA 49504 .......... .......... .......... .......... .......... .......... 100 TTGTCTACTG ATTGCTTTTG TCAACTGGTT TTGTGGATTG CTGAGTATGT AGAAGGTAAA 49564 .......... .......... .......... .......... .......... .......... 100 GATTTGTTTT ATTTTTACTG GTTTAGAGGT TTGAAACATG TTAACTGGTT TGTTTTATGT 49624 .......... .......... .......... .......... .......... .......... 100 TTCTTGATTT CTTTGAGTTG ATTCCCTTCT TTTGCTTAAG ATAGTTGAGC TTGTGTTCAC 49684 .......... .......... .......... .......... .......... .......... 100 TTATTGTGTA TATTTGTCGA CTAATTTAAT GGATTCTTGA TCTTGAGTAT AGTCAATTAA 49744 .......... .......... .......... .......... .......... .......... 100 AGATTCATTT TTCACTGTTT TTAAAGGTCC AAAACATGTT ACTGGTTTGA TTTCTGTGTC 49804 .......... .......... .......... .......... .......... .......... 100 TGAGGTACAA AAATGGAGTT TGGTGAAGCT TATTCCTTTA CCTCTATACT GTAAAAATAT 49864 .......... .......... .......... .......... .......... .......... 100 GACTTCTCTT TATTTTCCTT CGTTCACTAA TTTTGTATCT CATACTTTTT ACAACTAATT 49924 .......... .......... .......... .......... .......... .......... 100 TGATGGATCC TTGAAGATTC AACCTTTCTT TGTCTTGGAG GTTCAAAACA TGTAAATGGT 49984 .......... .......... .......... .......... .......... .......... 100 TTATTTTCTG AATCTTGTTA CTTTACCCTT TTTATATAGC AAGTGTAACA CTTTGTGGCT 50044 .......... .......... .......... .......... .......... .......... 100 TATTTCTTTG TTTGCTTGCT TTTGATCACC ATATTTGAGC TTTTAGTTAC TTTATTTGTA 50104 .......... .......... .......... .......... .......... .......... 100 CCATCATACC TTTTTCAACT AATTAATGGG ATCTTGAGTA TAATTCACAT AAGGGTATAG 50164 .......... .......... .......... .......... .......... .......... 100 TTTTTTCCTG TTTTGAAGTT CAAAGCATGT TACATATTTT GTAAAATGAG TCTTTTCCTT 50224 .......... .......... .......... .......... .......... .......... 100 CTTTGAATAA GGGTTGGCTT GTTTCTCTGA TGCTAAATTC TGTGTTTTGA TATCAAACAG 50284 .......... .......... .......... .......... .......... .......... 100 GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 50344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGCCCTTGA 160 CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTG 50392 |||||||||| |||||||||| | |||||||| |||||||||| |||||||| CCAGGGCTGT TTTCTACATG GAGATGCAGT GCCTTGGTGC AATCTGTG 208 hqPGS_C08SLe0084H03.1+_SGN-E237795+ (49325 49416,50285 50392) ******************************************************************************** EST sequence 66 +strand 322 n (File: SGN-E232789+) 1 AGTTTATGTT CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT 61 GCTTTGGTCT ACTGTACTGC TGGTATCTCA GGAGGACACA TCAACCCAGC TGTGACCTTT 121 GGTCTTTTCT TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG 181 TGCCTTGGTG CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG ACCATACCAA 241 AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT 301 GCTGAAATTA TTGGCACCTT TG Predicted gene structure (within gDNA segment 48726 to 51125): Exon 1 49326 49416 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50515 ( 231 n); cDNA 92 322 ( 231 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E232789+ 1.000 322 1.000 C PGS_C08SLe0084H03.1+_SGN-E232789+ (49326 49416,50285 50515) Alignment (genomic DNA sequence = upper lines): AGTTTATGTT CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT 49385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTATGTT CTTCAGTGGG TATTCAAGGG GTTGCTTGGG CTTTTGGTGG TATGATCTTT 60 GCTTTGGTCT ACTGTACTGC TGGTATCTCA GGTTGGTTTC ATTGCCCCCC TTTTCATTCT 49445 |||||||||| |||||||||| |||||||||| | GCTTTGGTCT ACTGTACTGC TGGTATCTCA G......... .......... .......... 91 TGATGCTAAA GATTGTAACT TTACTTGTTT TACTTAAAGA GTGAGTTTGT GTTCATTTAT 49505 .......... .......... .......... .......... .......... .......... 91 TGTCTACTGA TTGCTTTTGT CAACTGGTTT TGTGGATTGC TGAGTATGTA GAAGGTAAAG 49565 .......... .......... .......... .......... .......... .......... 91 ATTTGTTTTA TTTTTACTGG TTTAGAGGTT TGAAACATGT TAACTGGTTT GTTTTATGTT 49625 .......... .......... .......... .......... .......... .......... 91 TCTTGATTTC TTTGAGTTGA TTCCCTTCTT TTGCTTAAGA TAGTTGAGCT TGTGTTCACT 49685 .......... .......... .......... .......... .......... .......... 91 TATTGTGTAT ATTTGTCGAC TAATTTAATG GATTCTTGAT CTTGAGTATA GTCAATTAAA 49745 .......... .......... .......... .......... .......... .......... 91 GATTCATTTT TCACTGTTTT TAAAGGTCCA AAACATGTTA CTGGTTTGAT TTCTGTGTCT 49805 .......... .......... .......... .......... .......... .......... 91 GAGGTACAAA AATGGAGTTT GGTGAAGCTT ATTCCTTTAC CTCTATACTG TAAAAATATG 49865 .......... .......... .......... .......... .......... .......... 91 ACTTCTCTTT ATTTTCCTTC GTTCACTAAT TTTGTATCTC ATACTTTTTA CAACTAATTT 49925 .......... .......... .......... .......... .......... .......... 91 GATGGATCCT TGAAGATTCA ACCTTTCTTT GTCTTGGAGG TTCAAAACAT GTAAATGGTT 49985 .......... .......... .......... .......... .......... .......... 91 TATTTTCTGA ATCTTGTTAC TTTACCCTTT TTATATAGCA AGTGTAACAC TTTGTGGCTT 50045 .......... .......... .......... .......... .......... .......... 91 ATTTCTTTGT TTGCTTGCTT TTGATCACCA TATTTGAGCT TTTAGTTACT TTATTTGTAC 50105 .......... .......... .......... .......... .......... .......... 91 CATCATACCT TTTTCAACTA ATTAATGGGA TCTTGAGTAT AATTCACATA AGGGTATAGT 50165 .......... .......... .......... .......... .......... .......... 91 TTTTTCCTGT TTTGAAGTTC AAAGCATGTT ACATATTTTG TAAAATGAGT CTTTTCCTTC 50225 .......... .......... .......... .......... .......... .......... 91 TTTGAATAAG GGTTGGCTTG TTTCTCTGAT GCTAAATTCT GTGTTTTGAT ATCAAACAGG 50285 | .......... .......... .......... .......... .......... .........G 92 AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC 50345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC 152 CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT 50405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT 212 GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC 50465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC 272 TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG 50515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG 322 hqPGS_C08SLe0084H03.1+_SGN-E232789+ (49326 49416,50285 50515) ******************************************************************************** EST sequence 123 +strand 529 n (File: SGN-E340605+) 1 TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT GGTATGATCT TTGCTTTGGT 61 CTACTGTACT GCTGGTATCT CAGGAGGACA CATCAACCCA GCTGTGACCT TTGGTCTTTT 121 CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC AGTGCCTTGG 181 TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA GGACCATACC AAAGACTTGG 241 TGGTGGTGCT AATGTTGTTA ACCCTGGATA CACCAAGGGT GATGGCCTTG GTGCTGAAAT 301 TATTGGCACC TTTGTCCTTG TTTACACTGT TTTTTCAGCC ACTGATGCCA AGAGAAATGC 361 CAGAGACTCA CATGTTCCTA TTTTGGCACC ACTTCCTATT GGATTCGCAG TGTTCTTGGT 421 TCATTTGGCC ACCATCCCCA TCACCGGAAC TGGCATCAAC CCCGCCAGGA GTCTTGGAGC 481 TGCTATCATC TACAACGACG AGCATGCATG GAATGACCAC TGGATCTTC Predicted gene structure (within gDNA segment 48734 to 52451): Exon 1 49334 49416 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 84 379 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 380 520 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 0) Exon 4 51872 51880 ( 9 n); cDNA 521 529 ( 9 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E340605+ 1.000 529 1.000 C PGS_C08SLe0084H03.1+_SGN-E340605+ (49334 49416,50285 50580,51611 51751,51872 51880) Alignment (genomic DNA sequence = upper lines): TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT GGTATGATCT TTGCTTTGGT 49393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCAGTG GGTATTCAAG GGGTTGCTTG GGCTTTTGGT GGTATGATCT TTGCTTTGGT 60 CTACTGTACT GCTGGTATCT CAGGTTGGTT TCATTGCCCC CCTTTTCATT CTTGATGCTA 49453 |||||||||| |||||||||| ||| CTACTGTACT GCTGGTATCT CAG....... .......... .......... .......... 83 AAGATTGTAA CTTTACTTGT TTTACTTAAA GAGTGAGTTT GTGTTCATTT ATTGTCTACT 49513 .......... .......... .......... .......... .......... .......... 83 GATTGCTTTT GTCAACTGGT TTTGTGGATT GCTGAGTATG TAGAAGGTAA AGATTTGTTT 49573 .......... .......... .......... .......... .......... .......... 83 TATTTTTACT GGTTTAGAGG TTTGAAACAT GTTAACTGGT TTGTTTTATG TTTCTTGATT 49633 .......... .......... .......... .......... .......... .......... 83 TCTTTGAGTT GATTCCCTTC TTTTGCTTAA GATAGTTGAG CTTGTGTTCA CTTATTGTGT 49693 .......... .......... .......... .......... .......... .......... 83 ATATTTGTCG ACTAATTTAA TGGATTCTTG ATCTTGAGTA TAGTCAATTA AAGATTCATT 49753 .......... .......... .......... .......... .......... .......... 83 TTTCACTGTT TTTAAAGGTC CAAAACATGT TACTGGTTTG ATTTCTGTGT CTGAGGTACA 49813 .......... .......... .......... .......... .......... .......... 83 AAAATGGAGT TTGGTGAAGC TTATTCCTTT ACCTCTATAC TGTAAAAATA TGACTTCTCT 49873 .......... .......... .......... .......... .......... .......... 83 TTATTTTCCT TCGTTCACTA ATTTTGTATC TCATACTTTT TACAACTAAT TTGATGGATC 49933 .......... .......... .......... .......... .......... .......... 83 CTTGAAGATT CAACCTTTCT TTGTCTTGGA GGTTCAAAAC ATGTAAATGG TTTATTTTCT 49993 .......... .......... .......... .......... .......... .......... 83 GAATCTTGTT ACTTTACCCT TTTTATATAG CAAGTGTAAC ACTTTGTGGC TTATTTCTTT 50053 .......... .......... .......... .......... .......... .......... 83 GTTTGCTTGC TTTTGATCAC CATATTTGAG CTTTTAGTTA CTTTATTTGT ACCATCATAC 50113 .......... .......... .......... .......... .......... .......... 83 CTTTTTCAAC TAATTAATGG GATCTTGAGT ATAATTCACA TAAGGGTATA GTTTTTTCCT 50173 .......... .......... .......... .......... .......... .......... 83 GTTTTGAAGT TCAAAGCATG TTACATATTT TGTAAAATGA GTCTTTTCCT TCTTTGAATA 50233 .......... .......... .......... .......... .......... .......... 83 AGGGTTGGCT TGTTTCTCTG ATGCTAAATT CTGTGTTTTG ATATCAAACA GGAGGACACA 50293 ||||||||| .......... .......... .......... .......... .......... .GAGGACACA 92 TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG 50353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG 152 TTTTCTACAT GGTGATGCAG TGCCTTGGTG CAATCTGTGG TGCTGGTGTT GTGAAGGGCT 50413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTACAT GGTGATGCAG TGCCTTGGTG CAATCTGTGG TGCTGGTGTT GTGAAGGGCT 212 TCATGGTAGG ACCATACCAA AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA 50473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGTAGG ACCATACCAA AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA 272 CCAAGGGTGA TGGCCTTGGT GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT 50533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGGGTGA TGGCCTTGGT GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT 332 TTTCAGCCAC TGATGCCAAG AGAAATGCCA GAGACTCACA TGTTCCTGTA AGTGTTTTCC 50593 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTTCAGCCAC TGATGCCAAG AGAAATGCCA GAGACTCACA TGTTCCT... .......... 379 TCTTGTAGTT TTATTTCTTC TTTGTGATAT CAAGTTTGCT TATCATGGAT ATTTACATGT 50653 .......... .......... .......... .......... .......... .......... 379 TAATTCTAAG CTAGAGTCTA ACCAGAAATT TTGGAAGTAG TTTCTGAAAA TTTATCAATG 50713 .......... .......... .......... .......... .......... .......... 379 ATATATGTGA CTTTACATTA CATAGTTTGA CGATAAGTGA AGCGTGACAA GTAAAAATGA 50773 .......... .......... .......... .......... .......... .......... 379 TCGTAGGGCC AACTTGTTAC CCTACATTGT CTGATGAGAA GTGAAAAGTG ACAAGTAAAA 50833 .......... .......... .......... .......... .......... .......... 379 ATGACCGTAG GGCCAACTTG TTACCATACA TAGTTTGACG AGAAGTGAAA AGTGATTTTA 50893 .......... .......... .......... .......... .......... .......... 379 TGACAAGTAA AAGTGAACGG AGGGTATTAA ACAACCAACT TGCTATAACA TGTTAAATTA 50953 .......... .......... .......... .......... .......... .......... 379 CTCTAGTAGG GTAAAAGTTC ATTGTACTGT TTAATGTATG TAAAAAGTTG AAATCTTGCA 51013 .......... .......... .......... .......... .......... .......... 379 AGACAAGTGG GTCTTACTTT TTGGTAAGTT AGGCAAAAAT ATTGTTCATG CTATAGCATG 51073 .......... .......... .......... .......... .......... .......... 379 TGGCATGTCT GGTTTTGTCA GCAAGTCCTT TTAGTTGGTG TAGGGTTATG TTGTGGGCCT 51133 .......... .......... .......... .......... .......... .......... 379 AATTGAGTTA GGCTAAAGAT AGTGATGTTC ATGTGATAAG TTATTGTAAC TGTGGACTTT 51193 .......... .......... .......... .......... .......... .......... 379 TTCTTGTCAT GGAGTGGCTC GCCACGTCAC AGTGTTGTGG ACCTTTAGGT CATCTCCGAT 51253 .......... .......... .......... .......... .......... .......... 379 CCATAACACC AACTTTTATA CTAAAAACGT GTATCAAATG CGCTACACTG ATTGTTCGAC 51313 .......... .......... .......... .......... .......... .......... 379 ATAATATTAT ATAAAGAATG ATTTGGTATA TTAGGGAGTT TTCAAAAACG TAGAATTTAT 51373 .......... .......... .......... .......... .......... .......... 379 ACGTTGAGTT AAGTTTCTTT GTATTTTGTG GAGTGGAGAT GTAAATGACA CCAAATTTCA 51433 .......... .......... .......... .......... .......... .......... 379 TATTATTGTA GTGTCCGGAT AATGGTGTGA TACTATTCAT CAACGCCTAT TTTATATAGA 51493 .......... .......... .......... .......... .......... .......... 379 ATGATCACAT AAGAACATTG TTGGCCAGTC TTAGCTCACC ACAACTATCT TTTTGCGCTT 51553 .......... .......... .......... .......... .......... .......... 379 ATGTCTAAGA GAAATCCTTG GAAGACATTT GTCTGATAAT CTTTATGTTT ATTGTAGATT 51613 ||| .......... .......... .......... .......... .......... .......ATT 382 TTGGCACCAC TTCCTATTGG ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC CATCCCCATC 51673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCACCAC TTCCTATTGG ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC CATCCCCATC 442 ACCGGAACTG GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG 51733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGGAACTG GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG 502 CATGCATGGA ATGACCACGT AAGAAAAACA TCTTTCATTC TTTTAAACTG ACTCGAACAC 51793 |||||||||| |||||||| CATGCATGGA ATGACCAC.. .......... .......... .......... .......... 520 CACAGTTACT TGAACCAAAA AAAGGAGAGC TTAATCTAAC AAAGGGGTTC TTGTTTGTTT 51853 .......... .......... .......... .......... .......... .......... 520 TTTGTTGTTT TTGAACAGTG GATCTTC 51880 || ||||||| .......... ........TG GATCTTC 529 hqPGS_C08SLe0084H03.1+_SGN-E340605+ (49334 49416,50285 50580,51611 51751,51872 51880) ******************************************************************************** EST sequence 211 -strand 824 n (File: SGN-E542246-) 1 AATGGTCATT TTACAGAGCT ATTATTGCTG AATTTATTGC CACACTTTGA TTTCTATACA 61 TTACTGTACT CACTGTGATT GGCTACAAGA GCCAAAGTGA TGGTGACCAA TGTGGTGGTG 121 TTGGCATTCT TGGCATTGCT TGGGCCTTTG GTGGCATGAT TTTTGTTCTT GTTTATTGCA 181 CAGCTGGCAT TTCTGGTGGA CATATTAACC CTGCTGTGAC ATTTGGACTC TTGTTGGCCA 241 GAAAAGTGTC ATTAGTGAGA GCAATTTTTT ACATAGTAGC ACAATGCTTA GGAGCTATTT 301 GTGGTTGTGG TTTAGTGAAG TTATTTCAAA AGGCTTATTA TGTTAAGTAT GGTGGTGGTG 361 CTAATGAACT TGCTGTTGGT TACAACATAG CCACTGGATT AGGTGCTGAA ATTATTGGCA 421 CTTTTGTTCT TGTTTACACT GTTTTTTCTG CTACCGATCC CAAGAGAAAT GCCAGAGACT 481 CTCATGTTCC TGTATTGGCA CCACTTCCAA TTGGATTTGC TGTATTTATG GTTCATTTGG 541 CCACTATTCC AATTACTGGA ACTGGTATTA ACCCAGCTAG AAGTTTTGGA GCTGCTGTAA 601 TTTATGGCAA AAATAAATCA TGGGATGACC AATGGATTTT TTGGGTTGGA CCTTTTATTG 661 GTGCTGCAAT TGCTGCAATA TATCATCAAT ATATTTTGAG AGCTGGAGCA TCCAAATCAA 721 TTAATTCATT CAGAAGCAAT GCATAATAAT AAGAATTAAT ATAAGCTATA CTGGCAATTA 781 TTATTAATTT TAAAATGTGC CAAAATATTT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 45871 to 54600): Exon 1 47312 47326 ( 15 n); cDNA 102 116 ( 15 n); score: 0.667 Intron 1 47327 49243 (1917 n); Pd: 0.000 (s: 0), Pa: 0.551 (s: 0) Exon 2 49244 49248 ( 5 n); cDNA 117 120 ( 4 n); score: 0.800 Intron 2 49249 49341 ( 93 n); Pd: 0.292 (s: 0), Pa: 0.752 (s: 0.76) Exon 3 49342 49416 ( 75 n); cDNA 121 195 ( 75 n); score: 0.747 Intron 3 49417 50284 ( 868 n); Pd: 0.993 (s: 0.74), Pa: 0.992 (s: 0.80) Exon 4 50285 50580 ( 296 n); cDNA 196 491 ( 296 n); score: 0.718 Intron 4 50581 51610 (1030 n); Pd: 1.000 (s: 0.90), Pa: 0.980 (s: 0.84) Exon 5 51611 51751 ( 141 n); cDNA 492 632 ( 141 n); score: 0.759 Intron 5 51752 51871 ( 120 n); Pd: 0.997 (s: 0.68), Pa: 0.991 (s: 0.80) Exon 6 51872 51957 ( 86 n); cDNA 633 717 ( 85 n); score: 0.721 Intron 6 51958 52738 ( 781 n); Pd: 0.812 (s: 0.66), Pa: 0.000 (s: 0) Exon 7 52739 52748 ( 10 n); cDNA 718 727 ( 10 n); score: 0.900 PPA cDNA 811 824 MATCH C08SLe0084H03.1+ SGN-E542246- 0.732 628 0.762 C PGS_C08SLe0084H03.1+_SGN-E542246- (47312 47326,49244 49248,49342 49416,50285 50580,51611 51751,51872 51957,52739 52748) Alignment (genomic DNA sequence = upper lines): GGCCCCCAAT TTGATGTCAC AGCAAGGAAT GACATTGATT GATGATGGCC CATTAAGCTC 47371 || ||||| || | GGTGACCAAT GTGGT..... .......... .......... .......... .......... 116 AGCCCATTTT AGCCGTTGGG CCTTGGCCCA TGTGCTTATT CAAATGTGTT GTCACTTTCC 47431 .......... .......... .......... .......... .......... .......... 116 ATAACGGTCA CATAATAATT AATTTTTTCA CTAAAAAAAA CGGCTATTTT TAGCTTTCAT 47491 .......... .......... .......... .......... .......... .......... 116 ATCACCAAGG AAAAATAAAA AACGCAACAC GTGATGTATG AATTTAAATT CGAACAACAT 47551 .......... .......... .......... .......... .......... .......... 116 AATATACATA AGCATGATTC TCAAACTTCG CCCTATACGA ATAACAAATT GATTATTCGC 47611 .......... .......... .......... .......... .......... .......... 116 AGAGTTTTGA ATCATTTCTT ATAACATCAT TTTAAATTTC TTTTTTTAAA AATATTTATT 47671 .......... .......... .......... .......... .......... .......... 116 TTAGGGAAAA AGAACAAATA TATTCTCGAA CTATCGTAAA TGAGACATGT AGATATCCTT 47731 .......... .......... .......... .......... .......... .......... 116 CGTCATATTT TTGGGACATC GTAAGCTTTG CCGTAAAAAA TTGGGCATAT ATATCATTTA 47791 .......... .......... .......... .......... .......... .......... 116 TACTAACAAA CATAATATTG ATTGAATATC GGATAGACCG ATAAATTTGC GCCACATGCC 47851 .......... .......... .......... .......... .......... .......... 116 CCTACTATTT AATCTTTCAT TAGAGTGAAT GACATAAACA CCAATATCTC AATAATATGA 47911 .......... .......... .......... .......... .......... .......... 116 CGAAGGATAT CTTCATACGA TTTATGATAA TTCGAAAATA TATTTATTAT TTTTTCCATA 47971 .......... .......... .......... .......... .......... .......... 116 ATTTTATATA ATAAGCTATG TCTTTTATCA TACTTTTAAA ATAGAATAGT TTAGTTCTAA 48031 .......... .......... .......... .......... .......... .......... 116 TCGAAGCAAT GTAAAAATTT ATATTTACTA TGGTCTTTGA GCTATGAAAA GTAAATTATG 48091 .......... .......... .......... .......... .......... .......... 116 TGAATATAAA ATGCTTTTGT ATGTTAATTT ATTCCACGTG TAGTAATATT TTCACTCTAT 48151 .......... .......... .......... .......... .......... .......... 116 TTTATGGCTA ATAATTTTTT GAATTTTGCT TAGCTGCCCA TATTCTTACA ACTATTTCAG 48211 .......... .......... .......... .......... .......... .......... 116 AGATTAGGTG AATAATAAGT TGGTCTGGAC CAGCTAATCA AATTTAAATT TGTTTTCAAA 48271 .......... .......... .......... .......... .......... .......... 116 TAATAATAAT AATTAACACT GACACTCTGT ATAAAGATAA GATTAACAAA TAAACCATAC 48331 .......... .......... .......... .......... .......... .......... 116 AAATAATCTG TCAACATCTT CTCCACCTTT GGCCCTTTCC AGAACACTCT TCTCTTTATC 48391 .......... .......... .......... .......... .......... .......... 116 ATATTTTAAA AAACTAATTA TATTAATCTC GTAGTTTCTC GTTCTTCGAT TTACGTTCCT 48451 .......... .......... .......... .......... .......... .......... 116 ATAATACTAT TACTGTTGTA ATAAAATTTT GTATTATTTA CCGTTTGTTA CATTTTATAT 48511 .......... .......... .......... .......... .......... .......... 116 ATCCGTTACT TCTTTATCTG AATTGTTTCA AATAGTATTT TACAAAAATC TTAAAAATTT 48571 .......... .......... .......... .......... .......... .......... 116 AATTGACTGC TTAAATTTTT TACTTTATTA ACAAAGATTC GGTTCCTATT ATAATTTCTA 48631 .......... .......... .......... .......... .......... .......... 116 GCTCTTTTTA AATAGAGTTC TATCGAAAAT AATCTGTAAT TATATTCTTT TATCTTCTAT 48691 .......... .......... .......... .......... .......... .......... 116 AGACTAAAGT TTAAAATGTT TTTTCTTTTA AATTAAGAGT CTATTATAAA TAACTTCTAT 48751 .......... .......... .......... .......... .......... .......... 116 TTCTTCGAAA CAGAATTGAA AATTTACTTT TACTGTATCT TGTATTAAAT ATCGATTTTA 48811 .......... .......... .......... .......... .......... .......... 116 TGTGAAAATA CATTGAATAT AATTATTGTT ATTATCCGAA GGAAAAAACA AAAAGAGTAG 48871 .......... .......... .......... .......... .......... .......... 116 ACCAACACAA TAATTAATCG GACCAATTTA ATAAGTTTAT CCCCACATTT TAGTTTAATT 48931 .......... .......... .......... .......... .......... .......... 116 TATTTGTATT ATAAAAAAAT GATTTCTCCA CTATAAAACA ACCACAGCCA TATCTATTCT 48991 .......... .......... .......... .......... .......... .......... 116 CAGTATCAAA TTTGGTTCTT GCACTGACCA CTCAGCACAA AGAAAGCAAA AAAAAAAAAA 49051 .......... .......... .......... .......... .......... .......... 116 AGAAGAAGAA AAAAGCTTCA ATCTTTGTGA AAAAATGGCA GAAAACAAGG AAGAAGATGT 49111 .......... .......... .......... .......... .......... .......... 116 TAAGCTTGGA GCTAACAAGT TTAGGGAAAC TCAACCATTA GGTACAGCAG CTCAAACAGA 49171 .......... .......... .......... .......... .......... .......... 116 CAAAGATTAC AAAGAGCCAC CACCAGCTCC ATTGTTTGAA CCAGGGGAGT TGTCATCATG 49231 .......... .......... .......... .......... .......... .......... 116 GTCCTTTTAC AGGGCTGGTA TTGCAGAGTT CATGGCAACT TTCTTGTTCT TGTATATCAC 49291 || || .......... ..GG-TG... .......... .......... .......... .......... 120 AATCTTGACT GTTATGGGTC TTAAGAGATC TGATAGTTTA TGTTCTTCAG TGGGTATTCA 49351 | || |||| .......... .......... .......... .......... .......... TTGGCATTCT 130 AGGGGTTGCT TGGGCTTTTG GTGGTATGAT CTTTGCTTTG GTCTACTGTA CTGCTGGTAT 49411 || ||||| ||||| |||| |||| ||||| |||| | | || || || | | ||||| || TGGCATTGCT TGGGCCTTTG GTGGCATGAT TTTTGTTCTT GTTTATTGCA CAGCTGGCAT 190 CTCAGGTTGG TTTCATTGCC CCCCTTTTCA TTCTTGATGC TAAAGATTGT AACTTTACTT 49471 || | TTCTG..... .......... .......... .......... .......... .......... 195 GTTTTACTTA AAGAGTGAGT TTGTGTTCAT TTATTGTCTA CTGATTGCTT TTGTCAACTG 49531 .......... .......... .......... .......... .......... .......... 195 GTTTTGTGGA TTGCTGAGTA TGTAGAAGGT AAAGATTTGT TTTATTTTTA CTGGTTTAGA 49591 .......... .......... .......... .......... .......... .......... 195 GGTTTGAAAC ATGTTAACTG GTTTGTTTTA TGTTTCTTGA TTTCTTTGAG TTGATTCCCT 49651 .......... .......... .......... .......... .......... .......... 195 TCTTTTGCTT AAGATAGTTG AGCTTGTGTT CACTTATTGT GTATATTTGT CGACTAATTT 49711 .......... .......... .......... .......... .......... .......... 195 AATGGATTCT TGATCTTGAG TATAGTCAAT TAAAGATTCA TTTTTCACTG TTTTTAAAGG 49771 .......... .......... .......... .......... .......... .......... 195 TCCAAAACAT GTTACTGGTT TGATTTCTGT GTCTGAGGTA CAAAAATGGA GTTTGGTGAA 49831 .......... .......... .......... .......... .......... .......... 195 GCTTATTCCT TTACCTCTAT ACTGTAAAAA TATGACTTCT CTTTATTTTC CTTCGTTCAC 49891 .......... .......... .......... .......... .......... .......... 195 TAATTTTGTA TCTCATACTT TTTACAACTA ATTTGATGGA TCCTTGAAGA TTCAACCTTT 49951 .......... .......... .......... .......... .......... .......... 195 CTTTGTCTTG GAGGTTCAAA ACATGTAAAT GGTTTATTTT CTGAATCTTG TTACTTTACC 50011 .......... .......... .......... .......... .......... .......... 195 CTTTTTATAT AGCAAGTGTA ACACTTTGTG GCTTATTTCT TTGTTTGCTT GCTTTTGATC 50071 .......... .......... .......... .......... .......... .......... 195 ACCATATTTG AGCTTTTAGT TACTTTATTT GTACCATCAT ACCTTTTTCA ACTAATTAAT 50131 .......... .......... .......... .......... .......... .......... 195 GGGATCTTGA GTATAATTCA CATAAGGGTA TAGTTTTTTC CTGTTTTGAA GTTCAAAGCA 50191 .......... .......... .......... .......... .......... .......... 195 TGTTACATAT TTTGTAAAAT GAGTCTTTTC CTTCTTTGAA TAAGGGTTGG CTTGTTTCTC 50251 .......... .......... .......... .......... .......... .......... 195 TGATGCTAAA TTCTGTGTTT TGATATCAAA CAGGAGGACA CATCAACCCA GCTGTGACCT 50311 | ||||| || ||||| |||||||| | .......... .......... .......... ...GTGGACA TATTAACCCT GCTGTGACAT 222 TTGGTCTTTT CTTGGCAAGG AAATTGTCCT TGACCAGGGC TGTTTTCTAC ATGGTGATGC 50371 |||| || || ||||| || ||| |||| | | || || |||| ||| || || | TTGGACTCTT GTTGGCCAGA AAAGTGTCAT TAGTGAGAGC AATTTTTTAC ATAGTAGCAC 282 AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA GGACCA-TAC 50430 | ||| | || || || ||| ||| |||| | |||||| || | || | || AATGCTTAGG AGCTATTTGT GGTTGTGGTT TAGTGAAGTT ATT-TCAAAA GGCTTATTAT 341 CAAAGACTTG GTGGTGGTGC TAATGTTGTT AACCCTGGAT ACACCAAGGG TGATGGCCTT 50490 | || |||||||||| ||||| || ||| | ||| || | ||| | GTTAAGTATG GTGGTGGTGC TAATGAACTT GCTGTTGGTT ACAACATAGC CACTGGATTA 401 GGTGCTGAAA TTATTGGCAC CTTTGTCCTT GTTTACACTG TTTTTTCAGC CACTGATGCC 50550 |||||||||| |||||||||| ||||| ||| |||||||||| ||||||| || || ||| || GGTGCTGAAA TTATTGGCAC TTTTGTTCTT GTTTACACTG TTTTTTCTGC TACCGATCCC 461 AAGAGAAATG CCAGAGACTC ACATGTTCCT GTAAGTGTTT TCCTCTTGTA GTTTTATTTC 50610 |||||||||| |||||||||| ||||||||| AAGAGAAATG CCAGAGACTC TCATGTTCCT .......... .......... .......... 491 TTCTTTGTGA TATCAAGTTT GCTTATCATG GATATTTACA TGTTAATTCT AAGCTAGAGT 50670 .......... .......... .......... .......... .......... .......... 491 CTAACCAGAA ATTTTGGAAG TAGTTTCTGA AAATTTATCA ATGATATATG TGACTTTACA 50730 .......... .......... .......... .......... .......... .......... 491 TTACATAGTT TGACGATAAG TGAAGCGTGA CAAGTAAAAA TGATCGTAGG GCCAACTTGT 50790 .......... .......... .......... .......... .......... .......... 491 TACCCTACAT TGTCTGATGA GAAGTGAAAA GTGACAAGTA AAAATGACCG TAGGGCCAAC 50850 .......... .......... .......... .......... .......... .......... 491 TTGTTACCAT ACATAGTTTG ACGAGAAGTG AAAAGTGATT TTATGACAAG TAAAAGTGAA 50910 .......... .......... .......... .......... .......... .......... 491 CGGAGGGTAT TAAACAACCA ACTTGCTATA ACATGTTAAA TTACTCTAGT AGGGTAAAAG 50970 .......... .......... .......... .......... .......... .......... 491 TTCATTGTAC TGTTTAATGT ATGTAAAAAG TTGAAATCTT GCAAGACAAG TGGGTCTTAC 51030 .......... .......... .......... .......... .......... .......... 491 TTTTTGGTAA GTTAGGCAAA AATATTGTTC ATGCTATAGC ATGTGGCATG TCTGGTTTTG 51090 .......... .......... .......... .......... .......... .......... 491 TCAGCAAGTC CTTTTAGTTG GTGTAGGGTT ATGTTGTGGG CCTAATTGAG TTAGGCTAAA 51150 .......... .......... .......... .......... .......... .......... 491 GATAGTGATG TTCATGTGAT AAGTTATTGT AACTGTGGAC TTTTTCTTGT CATGGAGTGG 51210 .......... .......... .......... .......... .......... .......... 491 CTCGCCACGT CACAGTGTTG TGGACCTTTA GGTCATCTCC GATCCATAAC ACCAACTTTT 51270 .......... .......... .......... .......... .......... .......... 491 ATACTAAAAA CGTGTATCAA ATGCGCTACA CTGATTGTTC GACATAATAT TATATAAAGA 51330 .......... .......... .......... .......... .......... .......... 491 ATGATTTGGT ATATTAGGGA GTTTTCAAAA ACGTAGAATT TATACGTTGA GTTAAGTTTC 51390 .......... .......... .......... .......... .......... .......... 491 TTTGTATTTT GTGGAGTGGA GATGTAAATG ACACCAAATT TCATATTATT GTAGTGTCCG 51450 .......... .......... .......... .......... .......... .......... 491 GATAATGGTG TGATACTATT CATCAACGCC TATTTTATAT AGAATGATCA CATAAGAACA 51510 .......... .......... .......... .......... .......... .......... 491 TTGTTGGCCA GTCTTAGCTC ACCACAACTA TCTTTTTGCG CTTATGTCTA AGAGAAATCC 51570 .......... .......... .......... .......... .......... .......... 491 TTGGAAGACA TTTGTCTGAT AATCTTTATG TTTATTGTAG ATTTTGGCAC CACTTCCTAT 51630 | ||||||| ||||||| || .......... .......... .......... .......... GTATTGGCAC CACTTCCAAT 511 TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA CTGGCATCAA 51690 |||||| || || || ||| |||||||||| ||| || || || || |||| |||| || || TGGATTTGCT GTATTTATGG TTCATTTGGC CACTATTCCA ATTACTGGAA CTGGTATTAA 571 CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT GGAATGACCA 51750 ||| || || ||| |||||| ||||| | || || | | | | ||| || ||||||| CCCAGCTAGA AGTTTTGGAG CTGCTGTAAT TTATGGCAAA AATAAATCAT GGGATGACCA 631 CGTAAGAAAA ACATCTTTCA TTCTTTTAAA CTGACTCGAA CACCACAGTT ACTTGAACCA 51810 A......... .......... .......... .......... .......... .......... 632 AAAAAAGGAG AGCTTAATCT AACAAAGGGG TTCTTGTTTG TTTTTTGTTG TTTTTGAACA 51870 .......... .......... .......... .......... .......... .......... 632 GTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT ACCACCAAAT 51930 ||||| || |||||||||| | | ||||| ||||| || ||||| || | | || ||| .TGGATTTTT TGGGTTGGAC CTTTTATTGG TGCTGCAATT GCTGCAATAT ATCATCAATA 691 AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA CAATGGGATT 51990 ||| | ||| ||| || |||| | TATTTTGAGA GCTGGAGCA- TCCAAAT... .......... .......... .......... 717 CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT 52050 .......... .......... .......... .......... .......... .......... 717 CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC TATTATGTGT 52110 .......... .......... .......... .......... .......... .......... 717 GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT TTATTTTTAT 52170 .......... .......... .......... .......... .......... .......... 717 CTTTGAACCG CGTCTCAATT TGTTTTTCTA GTTTTGACTT GATACGGAGT TGAGAAACAA 52230 .......... .......... .......... .......... .......... .......... 717 ACTGATTGTA CTTTTAGAGA CGGACTAGAA AGAAAAAAAA GACAAACAAA TTAAAATGGA 52290 .......... .......... .......... .......... .......... .......... 717 GAATTTTCGG TACTCTCTTT CTTTCACCTC CCCCACCCCC TCTAGATGTA GCCATTATTT 52350 .......... .......... .......... .......... .......... .......... 717 GTTAGAATAG GTAGGTAGAG GTAGCCATGG CTCACAAAAG ATCAATAATT GCTAACCAGT 52410 .......... .......... .......... .......... .......... .......... 717 ACTACAAAAT AGCTCACAAA AGATCAATAA TTGCTAACCA GTACTACAAA ATAGCTCATG 52470 .......... .......... .......... .......... .......... .......... 717 TAATTGCACT TCTAGGGTGA AGAGTAGCTA CTGAAAATTA TGTGTTACAT CAATTAGTGT 52530 .......... .......... .......... .......... .......... .......... 717 GCAAGGGACT ATAATGGCCC TGTGATGATA TCATCTATGT TCATATTGCC TTTTTTTTAA 52590 .......... .......... .......... .......... .......... .......... 717 AAAAAAATAG ATATAAAGCG AATTATTACA TATAAATTTC TTTCGTTAAC TAGGTAAATT 52650 .......... .......... .......... .......... .......... .......... 717 TACGATAACA TGAACGCATA AAATCCAAGT GTATGAAAGA TGGTGTAGTT ATTGTTATGA 52710 .......... .......... .......... .......... .......... .......... 717 TGCACTCAAG ATTTAGAATT TACTCTCTTA ATTAATTC 52748 | |||||||| .......... .......... ........CA ATTAATTC 727 hqPGS_C08SLe0084H03.1+_SGN-E542246- (49342 49416,50285 50580,51611 51751,51872 51957) ******************************************************************************** EST sequence 36 +strand 742 n (File: SGN-E340110+) 1 ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG GAGGACACAT CAACCCAGCT 61 GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG 121 GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA 181 CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT 241 GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT 301 GATGCCAAGA GAAATGCCAG AGACTCACAT GTTCCTATTT TGGCACCACT TCCTATTGGA 361 TTCGCAGTGT TCTTGGTTCA TTTGGCCACC ATCCCCATCA CCGGAACTGG CATCAACCCC 421 GCCAGGAGTC TTGGAGCTGC TATCATCTAC AACGACGAGC ATGCATGGAA TGACCACTGG 481 ATCTTCTGGG TTGGACCAAT GATTGGAGCT GCTCTTGCTG CTATTTACCA CCAAATAATT 541 ATCAGAGCTA TGCCATTCCA CAGGTCTTAA GTTATCTGTC TTTAAACAAT GGGATTCTCA 601 AAGACTCAAC AGTGTACTTT TGTCTTCTTT TTTTGGGGGG TTGAATGTTC AAGTTTCTCC 661 TTCAATGTAT TTGTAATGTG GATCTGTTCC TTCTGTTAAG ATGTTCTATT ATGTGTGTAA 721 AATATCAGGT TATGATAATG TA Predicted gene structure (within gDNA segment 48777 to 52746): Exon 1 49377 49416 ( 40 n); cDNA 1 40 ( 40 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 41 336 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 337 477 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51872 52136 ( 265 n); cDNA 478 742 ( 265 n); score: 0.996 MATCH C08SLe0084H03.1+ SGN-E340110+ 0.999 742 1.000 C PGS_C08SLe0084H03.1+_SGN-E340110+ (49377 49416,50285 50580,51611 51751,51872 52136) Alignment (genomic DNA sequence = upper lines): ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG GTTGGTTTCA TTGCCCCCCT 49436 |||||||||| |||||||||| |||||||||| |||||||||| ATGATCTTTG CTTTGGTCTA CTGTACTGCT GGTATCTCAG .......... .......... 40 TTTCATTCTT GATGCTAAAG ATTGTAACTT TACTTGTTTT ACTTAAAGAG TGAGTTTGTG 49496 .......... .......... .......... .......... .......... .......... 40 TTCATTTATT GTCTACTGAT TGCTTTTGTC AACTGGTTTT GTGGATTGCT GAGTATGTAG 49556 .......... .......... .......... .......... .......... .......... 40 AAGGTAAAGA TTTGTTTTAT TTTTACTGGT TTAGAGGTTT GAAACATGTT AACTGGTTTG 49616 .......... .......... .......... .......... .......... .......... 40 TTTTATGTTT CTTGATTTCT TTGAGTTGAT TCCCTTCTTT TGCTTAAGAT AGTTGAGCTT 49676 .......... .......... .......... .......... .......... .......... 40 GTGTTCACTT ATTGTGTATA TTTGTCGACT AATTTAATGG ATTCTTGATC TTGAGTATAG 49736 .......... .......... .......... .......... .......... .......... 40 TCAATTAAAG ATTCATTTTT CACTGTTTTT AAAGGTCCAA AACATGTTAC TGGTTTGATT 49796 .......... .......... .......... .......... .......... .......... 40 TCTGTGTCTG AGGTACAAAA ATGGAGTTTG GTGAAGCTTA TTCCTTTACC TCTATACTGT 49856 .......... .......... .......... .......... .......... .......... 40 AAAAATATGA CTTCTCTTTA TTTTCCTTCG TTCACTAATT TTGTATCTCA TACTTTTTAC 49916 .......... .......... .......... .......... .......... .......... 40 AACTAATTTG ATGGATCCTT GAAGATTCAA CCTTTCTTTG TCTTGGAGGT TCAAAACATG 49976 .......... .......... .......... .......... .......... .......... 40 TAAATGGTTT ATTTTCTGAA TCTTGTTACT TTACCCTTTT TATATAGCAA GTGTAACACT 50036 .......... .......... .......... .......... .......... .......... 40 TTGTGGCTTA TTTCTTTGTT TGCTTGCTTT TGATCACCAT ATTTGAGCTT TTAGTTACTT 50096 .......... .......... .......... .......... .......... .......... 40 TATTTGTACC ATCATACCTT TTTCAACTAA TTAATGGGAT CTTGAGTATA ATTCACATAA 50156 .......... .......... .......... .......... .......... .......... 40 GGGTATAGTT TTTTCCTGTT TTGAAGTTCA AAGCATGTTA CATATTTTGT AAAATGAGTC 50216 .......... .......... .......... .......... .......... .......... 40 TTTTCCTTCT TTGAATAAGG GTTGGCTTGT TTCTCTGATG CTAAATTCTG TGTTTTGATA 50276 .......... .......... .......... .......... .......... .......... 40 TCAAACAGGA GGACACATCA ACCCAGCTGT GACCTTTGGT CTTTTCTTGG CAAGGAAATT 50336 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA GGACACATCA ACCCAGCTGT GACCTTTGGT CTTTTCTTGG CAAGGAAATT 92 GTCCTTGACC AGGGCTGTTT TCTACATGGT GATGCAGTGC CTTGGTGCAA TCTGTGGTGC 50396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTTGACC AGGGCTGTTT TCTACATGGT GATGCAGTGC CTTGGTGCAA TCTGTGGTGC 152 TGGTGTTGTG AAGGGCTTCA TGGTAGGACC ATACCAAAGA CTTGGTGGTG GTGCTAATGT 50456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTGTG AAGGGCTTCA TGGTAGGACC ATACCAAAGA CTTGGTGGTG GTGCTAATGT 212 TGTTAACCCT GGATACACCA AGGGTGATGG CCTTGGTGCT GAAATTATTG GCACCTTTGT 50516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAACCCT GGATACACCA AGGGTGATGG CCTTGGTGCT GAAATTATTG GCACCTTTGT 272 CCTTGTTTAC ACTGTTTTTT CAGCCACTGA TGCCAAGAGA AATGCCAGAG ACTCACATGT 50576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGTTTAC ACTGTTTTTT CAGCCACTGA TGCCAAGAGA AATGCCAGAG ACTCACATGT 332 TCCTGTAAGT GTTTTCCTCT TGTAGTTTTA TTTCTTCTTT GTGATATCAA GTTTGCTTAT 50636 |||| TCCT...... .......... .......... .......... .......... .......... 336 CATGGATATT TACATGTTAA TTCTAAGCTA GAGTCTAACC AGAAATTTTG GAAGTAGTTT 50696 .......... .......... .......... .......... .......... .......... 336 CTGAAAATTT ATCAATGATA TATGTGACTT TACATTACAT AGTTTGACGA TAAGTGAAGC 50756 .......... .......... .......... .......... .......... .......... 336 GTGACAAGTA AAAATGATCG TAGGGCCAAC TTGTTACCCT ACATTGTCTG ATGAGAAGTG 50816 .......... .......... .......... .......... .......... .......... 336 AAAAGTGACA AGTAAAAATG ACCGTAGGGC CAACTTGTTA CCATACATAG TTTGACGAGA 50876 .......... .......... .......... .......... .......... .......... 336 AGTGAAAAGT GATTTTATGA CAAGTAAAAG TGAACGGAGG GTATTAAACA ACCAACTTGC 50936 .......... .......... .......... .......... .......... .......... 336 TATAACATGT TAAATTACTC TAGTAGGGTA AAAGTTCATT GTACTGTTTA ATGTATGTAA 50996 .......... .......... .......... .......... .......... .......... 336 AAAGTTGAAA TCTTGCAAGA CAAGTGGGTC TTACTTTTTG GTAAGTTAGG CAAAAATATT 51056 .......... .......... .......... .......... .......... .......... 336 GTTCATGCTA TAGCATGTGG CATGTCTGGT TTTGTCAGCA AGTCCTTTTA GTTGGTGTAG 51116 .......... .......... .......... .......... .......... .......... 336 GGTTATGTTG TGGGCCTAAT TGAGTTAGGC TAAAGATAGT GATGTTCATG TGATAAGTTA 51176 .......... .......... .......... .......... .......... .......... 336 TTGTAACTGT GGACTTTTTC TTGTCATGGA GTGGCTCGCC ACGTCACAGT GTTGTGGACC 51236 .......... .......... .......... .......... .......... .......... 336 TTTAGGTCAT CTCCGATCCA TAACACCAAC TTTTATACTA AAAACGTGTA TCAAATGCGC 51296 .......... .......... .......... .......... .......... .......... 336 TACACTGATT GTTCGACATA ATATTATATA AAGAATGATT TGGTATATTA GGGAGTTTTC 51356 .......... .......... .......... .......... .......... .......... 336 AAAAACGTAG AATTTATACG TTGAGTTAAG TTTCTTTGTA TTTTGTGGAG TGGAGATGTA 51416 .......... .......... .......... .......... .......... .......... 336 AATGACACCA AATTTCATAT TATTGTAGTG TCCGGATAAT GGTGTGATAC TATTCATCAA 51476 .......... .......... .......... .......... .......... .......... 336 CGCCTATTTT ATATAGAATG ATCACATAAG AACATTGTTG GCCAGTCTTA GCTCACCACA 51536 .......... .......... .......... .......... .......... .......... 336 ACTATCTTTT TGCGCTTATG TCTAAGAGAA ATCCTTGGAA GACATTTGTC TGATAATCTT 51596 .......... .......... .......... .......... .......... .......... 336 TATGTTTATT GTAGATTTTG GCACCACTTC CTATTGGATT CGCAGTGTTC TTGGTTCATT 51656 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....ATTTTG GCACCACTTC CTATTGGATT CGCAGTGTTC TTGGTTCATT 382 TGGCCACCAT CCCCATCACC GGAACTGGCA TCAACCCCGC CAGGAGTCTT GGAGCTGCTA 51716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCACCAT CCCCATCACC GGAACTGGCA TCAACCCCGC CAGGAGTCTT GGAGCTGCTA 442 TCATCTACAA CGACGAGCAT GCATGGAATG ACCACGTAAG AAAAACATCT TTCATTCTTT 51776 |||||||||| |||||||||| |||||||||| ||||| TCATCTACAA CGACGAGCAT GCATGGAATG ACCAC..... .......... .......... 477 TAAACTGACT CGAACACCAC AGTTACTTGA ACCAAAAAAA GGAGAGCTTA ATCTAACAAA 51836 .......... .......... .......... .......... .......... .......... 477 GGGGTTCTTG TTTGTTTTTT GTTGTTTTTG AACAGTGGAT CTTCTGGGTT GGACCAATGA 51896 ||||| |||||||||| |||||||||| .......... .......... .......... .....TGGAT CTTCTGGGTT GGACCAATGA 502 TTGGAGCTGC TCTTGCTGCT ATTTACCACC AAATAATTAT CAGAGCTATG CCATTCCACA 51956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGCTGC TCTTGCTGCT ATTTACCACC AAATAATTAT CAGAGCTATG CCATTCCACA 562 GGTCTTAAGT TATCTGTCTT TAAACAATGG GATTCTCAAA GACTCAACAG TGTACTTTTG 52016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTTAAGT TATCTGTCTT TAAACAATGG GATTCTCAAA GACTCAACAG TGTACTTTTG 622 TCTTCTTTTT TTGGGGGGTT GAATGTTCAA GTTTCTCCTT CAATGTATTT GTAATGTGGA 52076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTTTT TTGGGGGGTT GAATGTTCAA GTTTCTCCTT CAATGTATTT GTAATGTGGA 682 TCTGTTCCTT CTGTTAAGAT GTTCTATTAT GTGTGTAAAT TATCAGGTTA TGATAATGTA 52136 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCTGTTCCTT CTGTTAAGAT GTTCTATTAT GTGTGTAAAA TATCAGGTTA TGATAATGTA 742 hqPGS_C08SLe0084H03.1+_SGN-E340110+ (49377 49416,50285 50580,51611 51751,51872 52136) ******************************************************************************** EST sequence 160 -strand 788 n (File: SGN-E537523-) 1 TGATCTATGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG AGGACACATC AACCCAGCTG 61 TGACCTTTGG TCTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT 121 GATGCAGTGC CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA TGGTAGGACC 181 ATACCAAAGA CTTGGTGGTG GTGCTAATGT TGTTAACCCT GGATACACCA AGGGTGATGG 241 CCTTGGTGCT GAAATTATTG GCACCTTTGT CCTTGTTTAC ACTGTTTTTT CAGCCACTGA 301 TGCCAAGAGA AATGCCAGAG ACTCACATGT TCCTATTTTG GCACCACTTC CTATTGGATT 361 CGCAGTGTTC TTGGTTCATT TGGCCACCAT CCCCATCACC GGAACTGGCA TCAACCCCGC 421 CAGGAGTCTT GGAGCTGCTA TCATCTACAA CGACGAGCAT GCATGGAATG ACCACTGGAT 481 CTTCTGGGTT GGACCAATGA TTGGAGCTGC TCTTGCTGCT ATTTACCACC AAATAATTAT 541 CAGAGCTATG CCATTCCACA GGTCTTAAGT TATCTGTCTT TAAACAATGG GATTCTCAAA 601 GACTCAACAG TGTACTTTTG TCTTCTTTTT TTGGGGGGTT GAATGTTCAA GTTTCTCCTT 661 CAATGTATTT GTAATGTGGA TCTGTTCCTT CTGTTAAGAT GTTCTATTAT GTGTGTAAAT 721 TATCAGGTTA TGATAATGTA ATGTACCTTA TCAATGAAGG TTCTTTATTT TTATCTTGAA 781 AAAAGAAA Predicted gene structure (within gDNA segment 48705 to 52883): Exon 1 49378 49416 ( 39 n); cDNA 1 39 ( 39 n); score: 0.974 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0), Pa: 0.992 (s: 0.98) Exon 2 50285 50580 ( 296 n); cDNA 40 334 ( 295 n); score: 0.997 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 335 475 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51872 52177 ( 306 n); cDNA 476 780 ( 305 n); score: 0.997 MATCH C08SLe0084H03.1+ SGN-E537523- 0.997 782 0.992 C PGS_C08SLe0084H03.1+_SGN-E537523- (49378 49416,50285 50580,51611 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): TGATCTTTGC TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT 49437 |||||| ||| |||||||||| |||||||||| ||||||||| TGATCTATGC TTTGGTCTAC TGTACTGCTG GTATCTCAG. .......... .......... 39 TTCATTCTTG ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT 49497 .......... .......... .......... .......... .......... .......... 39 TCATTTATTG TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA 49557 .......... .......... .......... .......... .......... .......... 39 AGGTAAAGAT TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT 49617 .......... .......... .......... .......... .......... .......... 39 TTTATGTTTC TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG 49677 .......... .......... .......... .......... .......... .......... 39 TGTTCACTTA TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT 49737 .......... .......... .......... .......... .......... .......... 39 CAATTAAAGA TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT 49797 .......... .......... .......... .......... .......... .......... 39 CTGTGTCTGA GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA 49857 .......... .......... .......... .......... .......... .......... 39 AAAATATGAC TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA 49917 .......... .......... .......... .......... .......... .......... 39 ACTAATTTGA TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT 49977 .......... .......... .......... .......... .......... .......... 39 AAATGGTTTA TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT 50037 .......... .......... .......... .......... .......... .......... 39 TGTGGCTTAT TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT 50097 .......... .......... .......... .......... .......... .......... 39 ATTTGTACCA TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG 50157 .......... .......... .......... .......... .......... .......... 39 GGTATAGTTT TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT 50217 .......... .......... .......... .......... .......... .......... 39 TTTCCTTCTT TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT 50277 .......... .......... .......... .......... .......... .......... 39 CAAACAGGAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG 50337 ||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| .......GAG GACACATCAA CCCAGCTGTG ACCTTTGGTC TTT-CTTGGC AAGGAAATTG 91 TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT 50397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGACCA GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT 151 GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT 50457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTGTGA AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT 211 GTTAACCCTG GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC 50517 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAACCCTG GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC 271 CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT 50577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT 331 CCTGTAAGTG TTTTCCTCTT GTAGTTTTAT TTCTTCTTTG TGATATCAAG TTTGCTTATC 50637 ||| CCT....... .......... .......... .......... .......... .......... 334 ATGGATATTT ACATGTTAAT TCTAAGCTAG AGTCTAACCA GAAATTTTGG AAGTAGTTTC 50697 .......... .......... .......... .......... .......... .......... 334 TGAAAATTTA TCAATGATAT ATGTGACTTT ACATTACATA GTTTGACGAT AAGTGAAGCG 50757 .......... .......... .......... .......... .......... .......... 334 TGACAAGTAA AAATGATCGT AGGGCCAACT TGTTACCCTA CATTGTCTGA TGAGAAGTGA 50817 .......... .......... .......... .......... .......... .......... 334 AAAGTGACAA GTAAAAATGA CCGTAGGGCC AACTTGTTAC CATACATAGT TTGACGAGAA 50877 .......... .......... .......... .......... .......... .......... 334 GTGAAAAGTG ATTTTATGAC AAGTAAAAGT GAACGGAGGG TATTAAACAA CCAACTTGCT 50937 .......... .......... .......... .......... .......... .......... 334 ATAACATGTT AAATTACTCT AGTAGGGTAA AAGTTCATTG TACTGTTTAA TGTATGTAAA 50997 .......... .......... .......... .......... .......... .......... 334 AAGTTGAAAT CTTGCAAGAC AAGTGGGTCT TACTTTTTGG TAAGTTAGGC AAAAATATTG 51057 .......... .......... .......... .......... .......... .......... 334 TTCATGCTAT AGCATGTGGC ATGTCTGGTT TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG 51117 .......... .......... .......... .......... .......... .......... 334 GTTATGTTGT GGGCCTAATT GAGTTAGGCT AAAGATAGTG ATGTTCATGT GATAAGTTAT 51177 .......... .......... .......... .......... .......... .......... 334 TGTAACTGTG GACTTTTTCT TGTCATGGAG TGGCTCGCCA CGTCACAGTG TTGTGGACCT 51237 .......... .......... .......... .......... .......... .......... 334 TTAGGTCATC TCCGATCCAT AACACCAACT TTTATACTAA AAACGTGTAT CAAATGCGCT 51297 .......... .......... .......... .......... .......... .......... 334 ACACTGATTG TTCGACATAA TATTATATAA AGAATGATTT GGTATATTAG GGAGTTTTCA 51357 .......... .......... .......... .......... .......... .......... 334 AAAACGTAGA ATTTATACGT TGAGTTAAGT TTCTTTGTAT TTTGTGGAGT GGAGATGTAA 51417 .......... .......... .......... .......... .......... .......... 334 ATGACACCAA ATTTCATATT ATTGTAGTGT CCGGATAATG GTGTGATACT ATTCATCAAC 51477 .......... .......... .......... .......... .......... .......... 334 GCCTATTTTA TATAGAATGA TCACATAAGA ACATTGTTGG CCAGTCTTAG CTCACCACAA 51537 .......... .......... .......... .......... .......... .......... 334 CTATCTTTTT GCGCTTATGT CTAAGAGAAA TCCTTGGAAG ACATTTGTCT GATAATCTTT 51597 .......... .......... .......... .......... .......... .......... 334 ATGTTTATTG TAGATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT 51657 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...ATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT 381 GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT 51717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT 441 CATCTACAAC GACGAGCATG CATGGAATGA CCACGTAAGA AAAACATCTT TCATTCTTTT 51777 |||||||||| |||||||||| |||||||||| |||| CATCTACAAC GACGAGCATG CATGGAATGA CCAC...... .......... .......... 475 AAACTGACTC GAACACCACA GTTACTTGAA CCAAAAAAAG GAGAGCTTAA TCTAACAAAG 51837 .......... .......... .......... .......... .......... .......... 475 GGGTTCTTGT TTGTTTTTTG TTGTTTTTGA ACAGTGGATC TTCTGGGTTG GACCAATGAT 51897 |||||| |||||||||| |||||||||| .......... .......... .......... ....TGGATC TTCTGGGTTG GACCAATGAT 501 TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC AGAGCTATGC CATTCCACAG 51957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC AGAGCTATGC CATTCCACAG 561 GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCTCAAAG ACTCAACAGT GTACTTTTGT 52017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCTCAAAG ACTCAACAGT GTACTTTTGT 621 CTTCTTTTTT TGGGGGGTTG AATGTTCAAG TTTCTCCTTC AATGTATTTG TAATGTGGAT 52077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTTTTT TGGGGGGTTG AATGTTCAAG TTTCTCCTTC AATGTATTTG TAATGTGGAT 681 CTGTTCCTTC TGTTAAGATG TTCTATTATG TGTGTAAATT ATCAGGTTAT GATAATGTAA 52137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCCTTC TGTTAAGATG TTCTATTATG TGTGTAAATT ATCAGGTTAT GATAATGTAA 741 TGTACCTTAT CAATGAAGGT TCTTTATTTT TATCTTTGAA 52177 |||||||||| |||||||||| |||||||||| |||| ||||| TGTACCTTAT CAATGAAGGT TCTTTATTTT TATC-TTGAA 780 hqPGS_C08SLe0084H03.1+_SGN-E537523- (49378 49416,50285 50580,51611 51751,51872 52177) ******************************************************************************** EST sequence 45 +strand 479 n (File: SGN-E261309+) 1 TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGAGGACAC ATCAACCCAG CTGTGACCTT 61 TGGTCTTTTC TTGGCAAGGA AATTGTCCTT GACCAGGGCT GTTTTCTACA TGGTGATGCA 121 GTGCCTTGGT GCAATCTGTG GTGCTGGTGT TGTGAAGGGC TTCATGGTAG GACCATACCA 181 AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 241 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 301 GAGAAATGCC AGAGACTCAC ATGTTCCTAT TTTGGCACCA CTTCCTATTG GATTCGCAGT 361 GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC CCGCCAGGAG 421 TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACT GGATCTTCT Predicted gene structure (within gDNA segment 48785 to 52461): Exon 1 49385 49416 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 33 328 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 329 469 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 0) Exon 4 51872 51881 ( 10 n); cDNA 470 479 ( 10 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E261309+ 1.000 479 1.000 C PGS_C08SLe0084H03.1+_SGN-E261309+ (49385 49416,50285 50580,51611 51751,51872 51881) Alignment (genomic DNA sequence = upper lines): TGCTTTGGTC TACTGTACTG CTGGTATCTC AGGTTGGTTT CATTGCCCCC CTTTTCATTC 49444 |||||||||| |||||||||| |||||||||| || TGCTTTGGTC TACTGTACTG CTGGTATCTC AG........ .......... .......... 32 TTGATGCTAA AGATTGTAAC TTTACTTGTT TTACTTAAAG AGTGAGTTTG TGTTCATTTA 49504 .......... .......... .......... .......... .......... .......... 32 TTGTCTACTG ATTGCTTTTG TCAACTGGTT TTGTGGATTG CTGAGTATGT AGAAGGTAAA 49564 .......... .......... .......... .......... .......... .......... 32 GATTTGTTTT ATTTTTACTG GTTTAGAGGT TTGAAACATG TTAACTGGTT TGTTTTATGT 49624 .......... .......... .......... .......... .......... .......... 32 TTCTTGATTT CTTTGAGTTG ATTCCCTTCT TTTGCTTAAG ATAGTTGAGC TTGTGTTCAC 49684 .......... .......... .......... .......... .......... .......... 32 TTATTGTGTA TATTTGTCGA CTAATTTAAT GGATTCTTGA TCTTGAGTAT AGTCAATTAA 49744 .......... .......... .......... .......... .......... .......... 32 AGATTCATTT TTCACTGTTT TTAAAGGTCC AAAACATGTT ACTGGTTTGA TTTCTGTGTC 49804 .......... .......... .......... .......... .......... .......... 32 TGAGGTACAA AAATGGAGTT TGGTGAAGCT TATTCCTTTA CCTCTATACT GTAAAAATAT 49864 .......... .......... .......... .......... .......... .......... 32 GACTTCTCTT TATTTTCCTT CGTTCACTAA TTTTGTATCT CATACTTTTT ACAACTAATT 49924 .......... .......... .......... .......... .......... .......... 32 TGATGGATCC TTGAAGATTC AACCTTTCTT TGTCTTGGAG GTTCAAAACA TGTAAATGGT 49984 .......... .......... .......... .......... .......... .......... 32 TTATTTTCTG AATCTTGTTA CTTTACCCTT TTTATATAGC AAGTGTAACA CTTTGTGGCT 50044 .......... .......... .......... .......... .......... .......... 32 TATTTCTTTG TTTGCTTGCT TTTGATCACC ATATTTGAGC TTTTAGTTAC TTTATTTGTA 50104 .......... .......... .......... .......... .......... .......... 32 CCATCATACC TTTTTCAACT AATTAATGGG ATCTTGAGTA TAATTCACAT AAGGGTATAG 50164 .......... .......... .......... .......... .......... .......... 32 TTTTTTCCTG TTTTGAAGTT CAAAGCATGT TACATATTTT GTAAAATGAG TCTTTTCCTT 50224 .......... .......... .......... .......... .......... .......... 32 CTTTGAATAA GGGTTGGCTT GTTTCTCTGA TGCTAAATTC TGTGTTTTGA TATCAAACAG 50284 .......... .......... .......... .......... .......... .......... 32 GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 50344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 92 CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG 50404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG 152 TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC 50464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC 212 CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT 50524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT 272 ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG AGACTCACAT GTTCCTGTAA 50584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG AGACTCACAT GTTCCT.... 328 GTGTTTTCCT CTTGTAGTTT TATTTCTTCT TTGTGATATC AAGTTTGCTT ATCATGGATA 50644 .......... .......... .......... .......... .......... .......... 328 TTTACATGTT AATTCTAAGC TAGAGTCTAA CCAGAAATTT TGGAAGTAGT TTCTGAAAAT 50704 .......... .......... .......... .......... .......... .......... 328 TTATCAATGA TATATGTGAC TTTACATTAC ATAGTTTGAC GATAAGTGAA GCGTGACAAG 50764 .......... .......... .......... .......... .......... .......... 328 TAAAAATGAT CGTAGGGCCA ACTTGTTACC CTACATTGTC TGATGAGAAG TGAAAAGTGA 50824 .......... .......... .......... .......... .......... .......... 328 CAAGTAAAAA TGACCGTAGG GCCAACTTGT TACCATACAT AGTTTGACGA GAAGTGAAAA 50884 .......... .......... .......... .......... .......... .......... 328 GTGATTTTAT GACAAGTAAA AGTGAACGGA GGGTATTAAA CAACCAACTT GCTATAACAT 50944 .......... .......... .......... .......... .......... .......... 328 GTTAAATTAC TCTAGTAGGG TAAAAGTTCA TTGTACTGTT TAATGTATGT AAAAAGTTGA 51004 .......... .......... .......... .......... .......... .......... 328 AATCTTGCAA GACAAGTGGG TCTTACTTTT TGGTAAGTTA GGCAAAAATA TTGTTCATGC 51064 .......... .......... .......... .......... .......... .......... 328 TATAGCATGT GGCATGTCTG GTTTTGTCAG CAAGTCCTTT TAGTTGGTGT AGGGTTATGT 51124 .......... .......... .......... .......... .......... .......... 328 TGTGGGCCTA ATTGAGTTAG GCTAAAGATA GTGATGTTCA TGTGATAAGT TATTGTAACT 51184 .......... .......... .......... .......... .......... .......... 328 GTGGACTTTT TCTTGTCATG GAGTGGCTCG CCACGTCACA GTGTTGTGGA CCTTTAGGTC 51244 .......... .......... .......... .......... .......... .......... 328 ATCTCCGATC CATAACACCA ACTTTTATAC TAAAAACGTG TATCAAATGC GCTACACTGA 51304 .......... .......... .......... .......... .......... .......... 328 TTGTTCGACA TAATATTATA TAAAGAATGA TTTGGTATAT TAGGGAGTTT TCAAAAACGT 51364 .......... .......... .......... .......... .......... .......... 328 AGAATTTATA CGTTGAGTTA AGTTTCTTTG TATTTTGTGG AGTGGAGATG TAAATGACAC 51424 .......... .......... .......... .......... .......... .......... 328 CAAATTTCAT ATTATTGTAG TGTCCGGATA ATGGTGTGAT ACTATTCATC AACGCCTATT 51484 .......... .......... .......... .......... .......... .......... 328 TTATATAGAA TGATCACATA AGAACATTGT TGGCCAGTCT TAGCTCACCA CAACTATCTT 51544 .......... .......... .......... .......... .......... .......... 328 TTTGCGCTTA TGTCTAAGAG AAATCCTTGG AAGACATTTG TCTGATAATC TTTATGTTTA 51604 .......... .......... .......... .......... .......... .......... 328 TTGTAGATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA TTTGGCCACC 51664 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......ATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA TTTGGCCACC 382 ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC TATCATCTAC 51724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC TATCATCTAC 442 AACGACGAGC ATGCATGGAA TGACCACGTA AGAAAAACAT CTTTCATTCT TTTAAACTGA 51784 |||||||||| |||||||||| ||||||| AACGACGAGC ATGCATGGAA TGACCAC... .......... .......... .......... 469 CTCGAACACC ACAGTTACTT GAACCAAAAA AAGGAGAGCT TAATCTAACA AAGGGGTTCT 51844 .......... .......... .......... .......... .......... .......... 469 TGTTTGTTTT TTGTTGTTTT TGAACAGTGG ATCTTCT 51881 ||| ||||||| .......... .......... .......TGG ATCTTCT 479 hqPGS_C08SLe0084H03.1+_SGN-E261309+ (49385 49416,50285 50580,51611 51751,51872 51881) ******************************************************************************** EST sequence 74 +strand 630 n (File: SGN-E256285+) 1 GCTTTGGTCT ACTGTACTGC TGGTATCTCA AGAGGACACA TCAACCCAGC TGTGACCTTT 61 GGTCTTTTCT TGGCAAGGAA ATTGTCCTTG ACCAGGGCTG TTTTCTACAT GGTGATGCAG 121 TGCCTTGGTG CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG ACCATACCAA 181 AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT 241 GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGATGCCAAG 301 AGAAATGCCA GAGACTCACA TGTTCCTATT TTGGCACCAC TTCCTATTGG ATTCGCAGTG 361 TTCTTGGTTC ATTTGGCCAC CATCCCCATC ACCGGAACTG GCATCAACCC CGCCAGGAGT 421 CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA ATGACCACTG GATCTTCTGG 481 GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC ACCAAATAAT TATCAGAGCT 541 ATGCCATTCC ACAAGTCTTA AGTTATCTGT CTTTAAACAA TGGGATTCTC AAAGACTCAA 601 CAGTGTACTT TTGTCTTCTT TTTTTGGGGG Predicted gene structure (within gDNA segment 48786 to 52643): Exon 1 49386 49416 ( 31 n); cDNA 1 31 ( 31 n); score: 0.968 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 32 327 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 328 468 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51872 52033 ( 162 n); cDNA 469 630 ( 162 n); score: 0.994 MATCH C08SLe0084H03.1+ SGN-E256285+ 0.998 630 1.000 C PGS_C08SLe0084H03.1+_SGN-E256285+ (49386 49416,50285 50580,51611 51751,51872 52033) Alignment (genomic DNA sequence = upper lines): GCTTTGGTCT ACTGTACTGC TGGTATCTCA GGTTGGTTTC ATTGCCCCCC TTTTCATTCT 49445 |||||||||| |||||||||| |||||||||| GCTTTGGTCT ACTGTACTGC TGGTATCTCA A......... .......... .......... 31 TGATGCTAAA GATTGTAACT TTACTTGTTT TACTTAAAGA GTGAGTTTGT GTTCATTTAT 49505 .......... .......... .......... .......... .......... .......... 31 TGTCTACTGA TTGCTTTTGT CAACTGGTTT TGTGGATTGC TGAGTATGTA GAAGGTAAAG 49565 .......... .......... .......... .......... .......... .......... 31 ATTTGTTTTA TTTTTACTGG TTTAGAGGTT TGAAACATGT TAACTGGTTT GTTTTATGTT 49625 .......... .......... .......... .......... .......... .......... 31 TCTTGATTTC TTTGAGTTGA TTCCCTTCTT TTGCTTAAGA TAGTTGAGCT TGTGTTCACT 49685 .......... .......... .......... .......... .......... .......... 31 TATTGTGTAT ATTTGTCGAC TAATTTAATG GATTCTTGAT CTTGAGTATA GTCAATTAAA 49745 .......... .......... .......... .......... .......... .......... 31 GATTCATTTT TCACTGTTTT TAAAGGTCCA AAACATGTTA CTGGTTTGAT TTCTGTGTCT 49805 .......... .......... .......... .......... .......... .......... 31 GAGGTACAAA AATGGAGTTT GGTGAAGCTT ATTCCTTTAC CTCTATACTG TAAAAATATG 49865 .......... .......... .......... .......... .......... .......... 31 ACTTCTCTTT ATTTTCCTTC GTTCACTAAT TTTGTATCTC ATACTTTTTA CAACTAATTT 49925 .......... .......... .......... .......... .......... .......... 31 GATGGATCCT TGAAGATTCA ACCTTTCTTT GTCTTGGAGG TTCAAAACAT GTAAATGGTT 49985 .......... .......... .......... .......... .......... .......... 31 TATTTTCTGA ATCTTGTTAC TTTACCCTTT TTATATAGCA AGTGTAACAC TTTGTGGCTT 50045 .......... .......... .......... .......... .......... .......... 31 ATTTCTTTGT TTGCTTGCTT TTGATCACCA TATTTGAGCT TTTAGTTACT TTATTTGTAC 50105 .......... .......... .......... .......... .......... .......... 31 CATCATACCT TTTTCAACTA ATTAATGGGA TCTTGAGTAT AATTCACATA AGGGTATAGT 50165 .......... .......... .......... .......... .......... .......... 31 TTTTTCCTGT TTTGAAGTTC AAAGCATGTT ACATATTTTG TAAAATGAGT CTTTTCCTTC 50225 .......... .......... .......... .......... .......... .......... 31 TTTGAATAAG GGTTGGCTTG TTTCTCTGAT GCTAAATTCT GTGTTTTGAT ATCAAACAGG 50285 | .......... .......... .......... .......... .......... .........G 32 AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC 50345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC 92 CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT 50405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT 152 GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC 50465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC 212 TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA 50525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA 272 CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCTGTAAG 50585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCT..... 327 TGTTTTCCTC TTGTAGTTTT ATTTCTTCTT TGTGATATCA AGTTTGCTTA TCATGGATAT 50645 .......... .......... .......... .......... .......... .......... 327 TTACATGTTA ATTCTAAGCT AGAGTCTAAC CAGAAATTTT GGAAGTAGTT TCTGAAAATT 50705 .......... .......... .......... .......... .......... .......... 327 TATCAATGAT ATATGTGACT TTACATTACA TAGTTTGACG ATAAGTGAAG CGTGACAAGT 50765 .......... .......... .......... .......... .......... .......... 327 AAAAATGATC GTAGGGCCAA CTTGTTACCC TACATTGTCT GATGAGAAGT GAAAAGTGAC 50825 .......... .......... .......... .......... .......... .......... 327 AAGTAAAAAT GACCGTAGGG CCAACTTGTT ACCATACATA GTTTGACGAG AAGTGAAAAG 50885 .......... .......... .......... .......... .......... .......... 327 TGATTTTATG ACAAGTAAAA GTGAACGGAG GGTATTAAAC AACCAACTTG CTATAACATG 50945 .......... .......... .......... .......... .......... .......... 327 TTAAATTACT CTAGTAGGGT AAAAGTTCAT TGTACTGTTT AATGTATGTA AAAAGTTGAA 51005 .......... .......... .......... .......... .......... .......... 327 ATCTTGCAAG ACAAGTGGGT CTTACTTTTT GGTAAGTTAG GCAAAAATAT TGTTCATGCT 51065 .......... .......... .......... .......... .......... .......... 327 ATAGCATGTG GCATGTCTGG TTTTGTCAGC AAGTCCTTTT AGTTGGTGTA GGGTTATGTT 51125 .......... .......... .......... .......... .......... .......... 327 GTGGGCCTAA TTGAGTTAGG CTAAAGATAG TGATGTTCAT GTGATAAGTT ATTGTAACTG 51185 .......... .......... .......... .......... .......... .......... 327 TGGACTTTTT CTTGTCATGG AGTGGCTCGC CACGTCACAG TGTTGTGGAC CTTTAGGTCA 51245 .......... .......... .......... .......... .......... .......... 327 TCTCCGATCC ATAACACCAA CTTTTATACT AAAAACGTGT ATCAAATGCG CTACACTGAT 51305 .......... .......... .......... .......... .......... .......... 327 TGTTCGACAT AATATTATAT AAAGAATGAT TTGGTATATT AGGGAGTTTT CAAAAACGTA 51365 .......... .......... .......... .......... .......... .......... 327 GAATTTATAC GTTGAGTTAA GTTTCTTTGT ATTTTGTGGA GTGGAGATGT AAATGACACC 51425 .......... .......... .......... .......... .......... .......... 327 AAATTTCATA TTATTGTAGT GTCCGGATAA TGGTGTGATA CTATTCATCA ACGCCTATTT 51485 .......... .......... .......... .......... .......... .......... 327 TATATAGAAT GATCACATAA GAACATTGTT GGCCAGTCTT AGCTCACCAC AACTATCTTT 51545 .......... .......... .......... .......... .......... .......... 327 TTGCGCTTAT GTCTAAGAGA AATCCTTGGA AGACATTTGT CTGATAATCT TTATGTTTAT 51605 .......... .......... .......... .......... .......... .......... 327 TGTAGATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT CTTGGTTCAT TTGGCCACCA 51665 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....ATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT CTTGGTTCAT TTGGCCACCA 382 TCCCCATCAC CGGAACTGGC ATCAACCCCG CCAGGAGTCT TGGAGCTGCT ATCATCTACA 51725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCCATCAC CGGAACTGGC ATCAACCCCG CCAGGAGTCT TGGAGCTGCT ATCATCTACA 442 ACGACGAGCA TGCATGGAAT GACCACGTAA GAAAAACATC TTTCATTCTT TTAAACTGAC 51785 |||||||||| |||||||||| |||||| ACGACGAGCA TGCATGGAAT GACCAC.... .......... .......... .......... 468 TCGAACACCA CAGTTACTTG AACCAAAAAA AGGAGAGCTT AATCTAACAA AGGGGTTCTT 51845 .......... .......... .......... .......... .......... .......... 468 GTTTGTTTTT TGTTGTTTTT GAACAGTGGA TCTTCTGGGT TGGACCAATG ATTGGAGCTG 51905 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......TGGA TCTTCTGGGT TGGACCAATG ATTGGAGCTG 502 CTCTTGCTGC TATTTACCAC CAAATAATTA TCAGAGCTAT GCCATTCCAC AGGTCTTAAG 51965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| CTCTTGCTGC TATTTACCAC CAAATAATTA TCAGAGCTAT GCCATTCCAC AAGTCTTAAG 562 TTATCTGTCT TTAAACAATG GGATTCTCAA AGACTCAACA GTGTACTTTT GTCTTCTTTT 52025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCTGTCT TTAAACAATG GGATTCTCAA AGACTCAACA GTGTACTTTT GTCTTCTTTT 622 TTTGGGGG 52033 |||||||| TTTGGGGG 630 hqPGS_C08SLe0084H03.1+_SGN-E256285+ (49386 49416,50285 50580,51611 51751,51872 52033) ******************************************************************************** EST sequence 54 +strand 614 n (File: SGN-E264618+) 1 TTTGGTCTAC TGTACTGCTG GTATCTCAAG AGGACACATC AACCCAGCTG TGACCTTTGG 61 TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG TGATGCAGTG 121 CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC CATACCAAAG 181 ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC 241 TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG 301 AAATGCCAGA GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT 361 CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG CCAGGAGTCT 421 TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT GACCACTGGA TCTTCTGGGT 481 TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCAC CAAATAATTA TCAGAGCTAT 541 GCCATTCCAC AGGTCTTAAG TTATCTGTCT TTAAACAATG GGATTCTCAA AGACTCAACA 601 GTGTACTTTT GTCT Predicted gene structure (within gDNA segment 48795 to 52629): Exon 1 49388 49416 ( 29 n); cDNA 1 29 ( 29 n); score: 0.966 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 30 325 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 326 466 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 51872 52019 ( 148 n); cDNA 467 614 ( 148 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E264618+ 1.000 614 1.000 C PGS_C08SLe0084H03.1+_SGN-E264618+ (49388 49416,50285 50580,51611 51751,51872 52019) Alignment (genomic DNA sequence = upper lines): TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG 49447 |||||||||| |||||||||| |||||||| TTTGGTCTAC TGTACTGCTG GTATCTCAA. .......... .......... .......... 29 ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG 49507 .......... .......... .......... .......... .......... .......... 29 TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT 49567 .......... .......... .......... .......... .......... .......... 29 TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC 49627 .......... .......... .......... .......... .......... .......... 29 TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA 49687 .......... .......... .......... .......... .......... .......... 29 TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA 49747 .......... .......... .......... .......... .......... .......... 29 TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA 49807 .......... .......... .......... .......... .......... .......... 29 GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC 49867 .......... .......... .......... .......... .......... .......... 29 TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA 49927 .......... .......... .......... .......... .......... .......... 29 TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA 49987 .......... .......... .......... .......... .......... .......... 29 TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT 50047 .......... .......... .......... .......... .......... .......... 29 TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA 50107 .......... .......... .......... .......... .......... .......... 29 TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT 50167 .......... .......... .......... .......... .......... .......... 29 TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT 50227 .......... .......... .......... .......... .......... .......... 29 TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG 50287 ||| .......... .......... .......... .......... .......... .......GAG 32 GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 50347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 92 GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 50407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 152 AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 50467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 212 GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA 50527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA 272 CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTGTAAGTG 50587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCT....... 325 TTTTCCTCTT GTAGTTTTAT TTCTTCTTTG TGATATCAAG TTTGCTTATC ATGGATATTT 50647 .......... .......... .......... .......... .......... .......... 325 ACATGTTAAT TCTAAGCTAG AGTCTAACCA GAAATTTTGG AAGTAGTTTC TGAAAATTTA 50707 .......... .......... .......... .......... .......... .......... 325 TCAATGATAT ATGTGACTTT ACATTACATA GTTTGACGAT AAGTGAAGCG TGACAAGTAA 50767 .......... .......... .......... .......... .......... .......... 325 AAATGATCGT AGGGCCAACT TGTTACCCTA CATTGTCTGA TGAGAAGTGA AAAGTGACAA 50827 .......... .......... .......... .......... .......... .......... 325 GTAAAAATGA CCGTAGGGCC AACTTGTTAC CATACATAGT TTGACGAGAA GTGAAAAGTG 50887 .......... .......... .......... .......... .......... .......... 325 ATTTTATGAC AAGTAAAAGT GAACGGAGGG TATTAAACAA CCAACTTGCT ATAACATGTT 50947 .......... .......... .......... .......... .......... .......... 325 AAATTACTCT AGTAGGGTAA AAGTTCATTG TACTGTTTAA TGTATGTAAA AAGTTGAAAT 51007 .......... .......... .......... .......... .......... .......... 325 CTTGCAAGAC AAGTGGGTCT TACTTTTTGG TAAGTTAGGC AAAAATATTG TTCATGCTAT 51067 .......... .......... .......... .......... .......... .......... 325 AGCATGTGGC ATGTCTGGTT TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG GTTATGTTGT 51127 .......... .......... .......... .......... .......... .......... 325 GGGCCTAATT GAGTTAGGCT AAAGATAGTG ATGTTCATGT GATAAGTTAT TGTAACTGTG 51187 .......... .......... .......... .......... .......... .......... 325 GACTTTTTCT TGTCATGGAG TGGCTCGCCA CGTCACAGTG TTGTGGACCT TTAGGTCATC 51247 .......... .......... .......... .......... .......... .......... 325 TCCGATCCAT AACACCAACT TTTATACTAA AAACGTGTAT CAAATGCGCT ACACTGATTG 51307 .......... .......... .......... .......... .......... .......... 325 TTCGACATAA TATTATATAA AGAATGATTT GGTATATTAG GGAGTTTTCA AAAACGTAGA 51367 .......... .......... .......... .......... .......... .......... 325 ATTTATACGT TGAGTTAAGT TTCTTTGTAT TTTGTGGAGT GGAGATGTAA ATGACACCAA 51427 .......... .......... .......... .......... .......... .......... 325 ATTTCATATT ATTGTAGTGT CCGGATAATG GTGTGATACT ATTCATCAAC GCCTATTTTA 51487 .......... .......... .......... .......... .......... .......... 325 TATAGAATGA TCACATAAGA ACATTGTTGG CCAGTCTTAG CTCACCACAA CTATCTTTTT 51547 .......... .......... .......... .......... .......... .......... 325 GCGCTTATGT CTAAGAGAAA TCCTTGGAAG ACATTTGTCT GATAATCTTT ATGTTTATTG 51607 .......... .......... .......... .......... .......... .......... 325 TAGATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC 51667 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC 382 CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC 51727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC 442 GACGAGCATG CATGGAATGA CCACGTAAGA AAAACATCTT TCATTCTTTT AAACTGACTC 51787 |||||||||| |||||||||| |||| GACGAGCATG CATGGAATGA CCAC...... .......... .......... .......... 466 GAACACCACA GTTACTTGAA CCAAAAAAAG GAGAGCTTAA TCTAACAAAG GGGTTCTTGT 51847 .......... .......... .......... .......... .......... .......... 466 TTGTTTTTTG TTGTTTTTGA ACAGTGGATC TTCTGGGTTG GACCAATGAT TGGAGCTGCT 51907 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....TGGATC TTCTGGGTTG GACCAATGAT TGGAGCTGCT 502 CTTGCTGCTA TTTACCACCA AATAATTATC AGAGCTATGC CATTCCACAG GTCTTAAGTT 51967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCTGCTA TTTACCACCA AATAATTATC AGAGCTATGC CATTCCACAG GTCTTAAGTT 562 ATCTGTCTTT AAACAATGGG ATTCTCAAAG ACTCAACAGT GTACTTTTGT CT 52019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ATCTGTCTTT AAACAATGGG ATTCTCAAAG ACTCAACAGT GTACTTTTGT CT 614 hqPGS_C08SLe0084H03.1+_SGN-E264618+ (49388 49416,50285 50580,51611 51751,51872 52019) ******************************************************************************** EST sequence 107 +strand 520 n (File: SGN-E266063+) 1 TTTGGTCTAC TGTACTGCTG GTATCTCAGG AGGACACATC AACCCAGCTG TGACCTTTGG 61 TCTTTTCTTG GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG TGATGCAGTG 121 CCTTGGTGCA ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC CATACCAAAG 181 ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC 241 TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG 301 AAATGCCAGA GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT 361 CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG CCAGGAGTCT 421 TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT GACCACTGGA TCTTCTGGGT 481 TGGACCAATG ATTGGAGCTG CTCTTGCTGC TTTTTACCAC Predicted gene structure (within gDNA segment 48788 to 52616): Exon 1 49388 49416 ( 29 n); cDNA 1 29 ( 29 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0), Pa: 0.992 (s: 1.00) Exon 2 50285 50580 ( 296 n); cDNA 30 325 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 51611 51751 ( 141 n); cDNA 326 466 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 0.98) Exon 4 51872 51925 ( 54 n); cDNA 467 520 ( 54 n); score: 0.981 MATCH C08SLe0084H03.1+ SGN-E266063+ 0.998 520 1.000 C PGS_C08SLe0084H03.1+_SGN-E266063+ (49388 49416,50285 50580,51611 51751,51872 51925) Alignment (genomic DNA sequence = upper lines): TTTGGTCTAC TGTACTGCTG GTATCTCAGG TTGGTTTCAT TGCCCCCCTT TTCATTCTTG 49447 |||||||||| |||||||||| ||||||||| TTTGGTCTAC TGTACTGCTG GTATCTCAG. .......... .......... .......... 29 ATGCTAAAGA TTGTAACTTT ACTTGTTTTA CTTAAAGAGT GAGTTTGTGT TCATTTATTG 49507 .......... .......... .......... .......... .......... .......... 29 TCTACTGATT GCTTTTGTCA ACTGGTTTTG TGGATTGCTG AGTATGTAGA AGGTAAAGAT 49567 .......... .......... .......... .......... .......... .......... 29 TTGTTTTATT TTTACTGGTT TAGAGGTTTG AAACATGTTA ACTGGTTTGT TTTATGTTTC 49627 .......... .......... .......... .......... .......... .......... 29 TTGATTTCTT TGAGTTGATT CCCTTCTTTT GCTTAAGATA GTTGAGCTTG TGTTCACTTA 49687 .......... .......... .......... .......... .......... .......... 29 TTGTGTATAT TTGTCGACTA ATTTAATGGA TTCTTGATCT TGAGTATAGT CAATTAAAGA 49747 .......... .......... .......... .......... .......... .......... 29 TTCATTTTTC ACTGTTTTTA AAGGTCCAAA ACATGTTACT GGTTTGATTT CTGTGTCTGA 49807 .......... .......... .......... .......... .......... .......... 29 GGTACAAAAA TGGAGTTTGG TGAAGCTTAT TCCTTTACCT CTATACTGTA AAAATATGAC 49867 .......... .......... .......... .......... .......... .......... 29 TTCTCTTTAT TTTCCTTCGT TCACTAATTT TGTATCTCAT ACTTTTTACA ACTAATTTGA 49927 .......... .......... .......... .......... .......... .......... 29 TGGATCCTTG AAGATTCAAC CTTTCTTTGT CTTGGAGGTT CAAAACATGT AAATGGTTTA 49987 .......... .......... .......... .......... .......... .......... 29 TTTTCTGAAT CTTGTTACTT TACCCTTTTT ATATAGCAAG TGTAACACTT TGTGGCTTAT 50047 .......... .......... .......... .......... .......... .......... 29 TTCTTTGTTT GCTTGCTTTT GATCACCATA TTTGAGCTTT TAGTTACTTT ATTTGTACCA 50107 .......... .......... .......... .......... .......... .......... 29 TCATACCTTT TTCAACTAAT TAATGGGATC TTGAGTATAA TTCACATAAG GGTATAGTTT 50167 .......... .......... .......... .......... .......... .......... 29 TTTCCTGTTT TGAAGTTCAA AGCATGTTAC ATATTTTGTA AAATGAGTCT TTTCCTTCTT 50227 .......... .......... .......... .......... .......... .......... 29 TGAATAAGGG TTGGCTTGTT TCTCTGATGC TAAATTCTGT GTTTTGATAT CAAACAGGAG 50287 ||| .......... .......... .......... .......... .......... .......GAG 32 GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 50347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACATCAA CCCAGCTGTG ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA 92 GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 50407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTGTTTT CTACATGGTG ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA 152 AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 50467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCTTCAT GGTAGGACCA TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG 212 GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA 50527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACACCAA GGGTGATGGC CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA 272 CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTGTAAGTG 50587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CTGTTTTTTC AGCCACTGAT GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCT....... 325 TTTTCCTCTT GTAGTTTTAT TTCTTCTTTG TGATATCAAG TTTGCTTATC ATGGATATTT 50647 .......... .......... .......... .......... .......... .......... 325 ACATGTTAAT TCTAAGCTAG AGTCTAACCA GAAATTTTGG AAGTAGTTTC TGAAAATTTA 50707 .......... .......... .......... .......... .......... .......... 325 TCAATGATAT ATGTGACTTT ACATTACATA GTTTGACGAT AAGTGAAGCG TGACAAGTAA 50767 .......... .......... .......... .......... .......... .......... 325 AAATGATCGT AGGGCCAACT TGTTACCCTA CATTGTCTGA TGAGAAGTGA AAAGTGACAA 50827 .......... .......... .......... .......... .......... .......... 325 GTAAAAATGA CCGTAGGGCC AACTTGTTAC CATACATAGT TTGACGAGAA GTGAAAAGTG 50887 .......... .......... .......... .......... .......... .......... 325 ATTTTATGAC AAGTAAAAGT GAACGGAGGG TATTAAACAA CCAACTTGCT ATAACATGTT 50947 .......... .......... .......... .......... .......... .......... 325 AAATTACTCT AGTAGGGTAA AAGTTCATTG TACTGTTTAA TGTATGTAAA AAGTTGAAAT 51007 .......... .......... .......... .......... .......... .......... 325 CTTGCAAGAC AAGTGGGTCT TACTTTTTGG TAAGTTAGGC AAAAATATTG TTCATGCTAT 51067 .......... .......... .......... .......... .......... .......... 325 AGCATGTGGC ATGTCTGGTT TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG GTTATGTTGT 51127 .......... .......... .......... .......... .......... .......... 325 GGGCCTAATT GAGTTAGGCT AAAGATAGTG ATGTTCATGT GATAAGTTAT TGTAACTGTG 51187 .......... .......... .......... .......... .......... .......... 325 GACTTTTTCT TGTCATGGAG TGGCTCGCCA CGTCACAGTG TTGTGGACCT TTAGGTCATC 51247 .......... .......... .......... .......... .......... .......... 325 TCCGATCCAT AACACCAACT TTTATACTAA AAACGTGTAT CAAATGCGCT ACACTGATTG 51307 .......... .......... .......... .......... .......... .......... 325 TTCGACATAA TATTATATAA AGAATGATTT GGTATATTAG GGAGTTTTCA AAAACGTAGA 51367 .......... .......... .......... .......... .......... .......... 325 ATTTATACGT TGAGTTAAGT TTCTTTGTAT TTTGTGGAGT GGAGATGTAA ATGACACCAA 51427 .......... .......... .......... .......... .......... .......... 325 ATTTCATATT ATTGTAGTGT CCGGATAATG GTGTGATACT ATTCATCAAC GCCTATTTTA 51487 .......... .......... .......... .......... .......... .......... 325 TATAGAATGA TCACATAAGA ACATTGTTGG CCAGTCTTAG CTCACCACAA CTATCTTTTT 51547 .......... .......... .......... .......... .......... .......... 325 GCGCTTATGT CTAAGAGAAA TCCTTGGAAG ACATTTGTCT GATAATCTTT ATGTTTATTG 51607 .......... .......... .......... .......... .......... .......... 325 TAGATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC 51667 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC 382 CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC 51727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC 442 GACGAGCATG CATGGAATGA CCACGTAAGA AAAACATCTT TCATTCTTTT AAACTGACTC 51787 |||||||||| |||||||||| |||| GACGAGCATG CATGGAATGA CCAC...... .......... .......... .......... 466 GAACACCACA GTTACTTGAA CCAAAAAAAG GAGAGCTTAA TCTAACAAAG GGGTTCTTGT 51847 .......... .......... .......... .......... .......... .......... 466 TTGTTTTTTG TTGTTTTTGA ACAGTGGATC TTCTGGGTTG GACCAATGAT TGGAGCTGCT 51907 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....TGGATC TTCTGGGTTG GACCAATGAT TGGAGCTGCT 502 CTTGCTGCTA TTTACCAC 51925 ||||||||| |||||||| CTTGCTGCTT TTTACCAC 520 hqPGS_C08SLe0084H03.1+_SGN-E266063+ (49388 49416,50285 50580,51611 51751,51872 51925) ******************************************************************************** EST sequence 128 +strand 363 n (File: SGN-E287631+) 1 ACAAAGAAAG CAAAAAAAAA AAAAGAAGAA GAAAAAAGCT TCAATCTTTG TGAAAAAATG 61 GCAGAAAACA AGGAAGAAGA TGTTAAGCTT GGAGCTAACA AGTTTAGGGA AACTCAACCA 121 TTAGGTACAG CAGCTCAAAC AGACAAAGAT TACAAAGAGC CACCACCAGC TCCATTGTTT 181 GAACCAGGGG AGTTGTCATC ATGGTCCTTT TACAGGGCTG GTATTGCAGA GTTCATGGCA 241 ACTTTCTTGT TCTTGTATAT CACAATCTTG ACTGTTATGG GTCTTAAGAG ATCTGATAGT 301 TTATGTTCTT CAGTGGGTAT TCAAGGGGTT GCTTGGGCTT TTGGTGGTAT GATCTTTGCT 361 TTG Predicted gene structure (within gDNA segment 48428 to 50001): Exon 1 49028 49391 ( 364 n); cDNA 1 363 ( 363 n); score: 0.997 MATCH C08SLe0084H03.1+ SGN-E287631+ 0.997 364 1.003 C PGS_C08SLe0084H03.1+_SGN-E287631+ (49028 49391) Alignment (genomic DNA sequence = upper lines): ACAAAGAAAG CAAAAAAAAA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT 49087 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGAAAG CAAAAAA-AA AAAAAGAAGA AGAAAAAAGC TTCAATCTTT GTGAAAAAAT 59 GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC 49147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGAAAAC AAGGAAGAAG ATGTTAAGCT TGGAGCTAAC AAGTTTAGGG AAACTCAACC 119 ATTAGGTACA GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT 49207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGGTACA GCAGCTCAAA CAGACAAAGA TTACAAAGAG CCACCACCAG CTCCATTGTT 179 TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC 49267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCAGGG GAGTTGTCAT CATGGTCCTT TTACAGGGCT GGTATTGCAG AGTTCATGGC 239 AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG 49327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCTTG TTCTTGTATA TCACAATCTT GACTGTTATG GGTCTTAAGA GATCTGATAG 299 TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC 49387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGTTCT TCAGTGGGTA TTCAAGGGGT TGCTTGGGCT TTTGGTGGTA TGATCTTTGC 359 TTTG 49391 |||| TTTG 363 hqPGS_C08SLe0084H03.1+_SGN-E287631+ (49028 49391) ******************************************************************************** EST sequence 110 +strand 294 n (File: SGN-E310880+) 1 AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT CTTTGTGAAA AAATGGCAGA AAACAAGGAA 61 GAAGATGTTA AGCTTGGAGC TAACAAGTTT AGGGAAACTT AACCATTAGG TACAGCAGCT 121 CAAACAGACA ATAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT 181 GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGATC ATGGCAACTT TCTTGATCTT 241 GTATATCACA ATCTTGACTG TGATGGGTCT TAAGAGATCT GATAGTTTAT GTTC Predicted gene structure (within gDNA segment 48372 to 49946): Exon 1 49044 49336 ( 293 n); cDNA 1 294 ( 294 n); score: 0.978 MATCH C08SLe0084H03.1+ SGN-E310880+ 0.978 293 0.997 C PGS_C08SLe0084H03.1+_SGN-E310880+ (49044 49336) Alignment (genomic DNA sequence = upper lines): AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT CTTTGTGAAA AAATGGCAGA AAACAAGGAA 49103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAAAG AAGAAGAAAA AAGCTTCAAT CTTTGTGAAA AAATGGCAGA AAACAAGGAA 60 GAAGATGTTA AGCTTGGAGC TAACAAGTTT AGGGAAACTC AACCATTAGG TACAGCAGCT 49163 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAAGATGTTA AGCTTGGAGC TAACAAGTTT AGGGAAACTT AACCATTAGG TACAGCAGCT 120 CAAACAGACA A-AGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT 49222 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACAGACA ATAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT 180 GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT 49282 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||||| |||| GTCATCATGG TCCTTTTACA GGGCTGGTAT TGCAGAGATC ATGGCAACTT TCTTGATCTT 240 GTATATCACA ATCTTGACTG TTATGGGTCT TAAGAGATCT GATAGTTTAT GTTC 49336 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||| GTATATCACA ATCTTGACTG TGATGGGTCT TAAGAGATCT GATAGTTTAT GTTC 294 hqPGS_C08SLe0084H03.1+_SGN-E310880+ (49044 49336) ******************************************************************************** EST sequence 6 +strand 319 n (File: SGN-E304968+) 1 AAAAAAAAGA AGACTAAAAA AGCTTCAATC TTTGTGAAAA AATGGCGGAA AACAAGGAAG 61 AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGTAGCTC 121 AAACAGACAA AGATTACAGA GAGCCACCAC CATCTCCATT GTTTGAACCA AGGGAGTTGT 181 CATCATGGTA CTTTTACAGG GCTGGTGTTG CTGAGCTCAT GGCAACTTTA TTGTTCTTGT 241 GTATAACAAT GTTGACTGTT ATGGGTCTTA AGAGATCTGA CAGTTTATGT TCTTCACAGG 301 GTATTCAAGG GGATGCTTG Predicted gene structure (within gDNA segment 48310 to 50990): Exon 1 49045 49363 ( 319 n); cDNA 1 319 ( 319 n); score: 0.940 MATCH C08SLe0084H03.1+ SGN-E304968+ 0.940 319 1.000 C PGS_C08SLe0084H03.1+_SGN-E304968+ (49045 49363) Alignment (genomic DNA sequence = upper lines): AAAAAAAAGA AGAAGAAAAA AGCTTCAATC TTTGTGAAAA AATGGCAGAA AACAAGGAAG 49104 |||||||||| ||| ||||| |||||||||| |||||||||| |||||| ||| |||||||||| AAAAAAAAGA AGACTAAAAA AGCTTCAATC TTTGTGAAAA AATGGCGGAA AACAAGGAAG 60 AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGCAGCTC 49164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AAGATGTTAA GCTTGGAGCT AACAAGTTTA GGGAAACTCA ACCATTAGGT ACAGTAGCTC 120 AAACAGACAA AGATTACAAA GAGCCACCAC CAGCTCCATT GTTTGAACCA GGGGAGTTGT 49224 |||||||||| |||||||| | |||||||||| || ||||||| |||||||||| ||||||||| AAACAGACAA AGATTACAGA GAGCCACCAC CATCTCCATT GTTTGAACCA AGGGAGTTGT 180 CATCATGGTC CTTTTACAGG GCTGGTATTG CAGAGTTCAT GGCAACTTTC TTGTTCTTGT 49284 ||||||||| |||||||||| |||||| ||| | ||| |||| ||||||||| |||||||||| CATCATGGTA CTTTTACAGG GCTGGTGTTG CTGAGCTCAT GGCAACTTTA TTGTTCTTGT 240 ATATCACAAT CTTGACTGTT ATGGGTCTTA AGAGATCTGA TAGTTTATGT TCTTCAGTGG 49344 ||| ||||| ||||||||| |||||||||| |||||||||| ||||||||| |||||| || GTATAACAAT GTTGACTGTT ATGGGTCTTA AGAGATCTGA CAGTTTATGT TCTTCACAGG 300 GTATTCAAGG GGTTGCTTG 49363 |||||||||| || |||||| GTATTCAAGG GGATGCTTG 319 hqPGS_C08SLe0084H03.1+_SGN-E304968+ (49045 49363) ******************************************************************************** EST sequence 29 +strand 375 n (File: SGN-E293696+) 1 CACAGAGAAA AAAGTGAGTG AAGAAAAAAA AAATGGCAGA GAACAAAGAA GAAGATGTTA 61 ATCTTGGAGC AAACAAGTAC AGGGAAACTC AGCCATTGGG GACAGCAGCT CAAACAGACA 121 AGGATTACAA AGAGCCACCA CCAGCTCCTC TGTTTGAACC AGGGGAATTG TCATCATGGT 181 CTTTTTACAG AGCTGGAATT GCTGAGTTTA TGGCTACTTT CTTGTTTTTG TACATAACAA 241 TCTTGACTGT TATGGGGCTT AAAAGGTCTG ATAGTTTGTG TTCTTCTGTG GGTGTTCAAG 301 GAGTTGCTTG GGCTTTTGGC GGTATGATCT TTGCTTTGGT TTACTGTACT GCTGGTATTC 361 TCAGGAGGAC ACATT Predicted gene structure (within gDNA segment 47545 to 50191): Exon 1 49081 49416 ( 336 n); cDNA 28 364 ( 337 n); score: 0.900 MATCH C08SLe0084H03.1+ SGN-E293696+ 0.900 336 0.896 C PGS_C08SLe0084H03.1+_SGN-E293696+ (49081 49416) Alignment (genomic DNA sequence = upper lines): AAAAAATGGC AGAAAACAAG GAAGAAGATG TTAAGCTTGG AGCTAACAAG TTTAGGGAAA 49140 |||||||||| ||| ||||| |||||||||| |||| ||||| ||| |||||| | ||||||| AAAAAATGGC AGAGAACAAA GAAGAAGATG TTAATCTTGG AGCAAACAAG TACAGGGAAA 87 CTCAACCATT AGGTACAGCA GCTCAAACAG ACAAAGATTA CAAAGAGCCA CCACCAGCTC 49200 |||| ||||| || |||||| |||||||||| |||| ||||| |||||||||| |||||||||| CTCAGCCATT GGGGACAGCA GCTCAAACAG ACAAGGATTA CAAAGAGCCA CCACCAGCTC 147 CATTGTTTGA ACCAGGGGAG TTGTCATCAT GGTCCTTTTA CAGGGCTGGT ATTGCAGAGT 49260 | ||||||| ||||||||| |||||||||| |||| ||||| ||| ||||| ||||| |||| CTCTGTTTGA ACCAGGGGAA TTGTCATCAT GGTCTTTTTA CAGAGCTGGA ATTGCTGAGT 207 TCATGGCAAC TTTCTTGTTC TTGTATATCA CAATCTTGAC TGTTATGGGT CTTAAGAGAT 49320 | ||||| || ||||||||| ||||| || | |||||||||| ||||||||| ||||| || | TTATGGCTAC TTTCTTGTTT TTGTACATAA CAATCTTGAC TGTTATGGGG CTTAAAAGGT 267 CTGATAGTTT ATGTTCTTCA GTGGGTATTC AAGGGGTTGC TTGGGCTTTT GGTGGTATGA 49380 |||||||||| |||||||| |||||| ||| |||| ||||| |||||||||| || ||||||| CTGATAGTTT GTGTTCTTCT GTGGGTGTTC AAGGAGTTGC TTGGGCTTTT GGCGGTATGA 327 TCTTTGCTTT GGTCTACTGT ACTGCTGGTA -TCTCAG 49416 |||||||||| ||| |||||| |||||||||| |||||| TCTTTGCTTT GGTTTACTGT ACTGCTGGTA TTCTCAG 364 hqPGS_C08SLe0084H03.1+_SGN-E293696+ (49081 49416) ******************************************************************************** EST sequence 22 +strand 604 n (File: SGN-E348656+) 1 GCTGGTATCT CAGGAGGACA CAATCAACCC AGCTGTGACC TTTGGTCTTT TCTTGGCAAG 61 GAAATTGTCC TTGACCAGGG CTGTTTTCTA CATGGTGATG CAGTGCCTTG GTGCAATCTG 121 TGGTGCTGGT GTTGTGAAGG GCTTCATGGT AGGACCATAC CAAAGACTTG GTGGTGGTGC 181 TAATGTTGTT AACCCTGGAT ACACCAAGGG TGATGGCCTT GGTGCTGAAA TTATTGGCAC 241 CTTTGTCCTT GTTTACACTG TTTTTTCAGC CACTGATGCC AAGAGAAATG CCAGAGACTC 301 ACATGTTCCT ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC 361 CACCATCCCC ATCACCGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAT CTGCTATCAT 421 CTACAACGAC GAGCATGCAT GGAATGACCA CTGGATCTTC TGGGTTGGAC CAATGATTGG 481 AGCTGCTCTT GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC 541 TTAAGTTATC TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT 601 CTTT Predicted gene structure (within gDNA segment 49473 to 52634): Exon 1 50285 50580 ( 296 n); cDNA 14 310 ( 297 n); score: 0.992 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 311 451 ( 141 n); score: 0.993 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 0.98), Pa: 0.991 (s: 1.00) Exon 3 51872 52024 ( 153 n); cDNA 452 604 ( 153 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E348656+ 0.994 590 0.977 C PGS_C08SLe0084H03.1+_SGN-E348656+ (50285 50580,51611 51751,51872 52024) Alignment (genomic DNA sequence = upper lines): GAGGACAC-A TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGCAAGGAA ATTGTCCTTG 50343 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACACAA TCAACCCAGC TGTGACCTTT GGTCTTTTCT TGGCAAGGAA ATTGTCCTTG 73 ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG CAATCTGTGG TGCTGGTGTT 50403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGGGCTG TTTTCTACAT GGTGATGCAG TGCCTTGGTG CAATCTGTGG TGCTGGTGTT 133 GTGAAGGGCT TCATGGTAGG ACCATACCAA AGACTTGGTG GTGGTGCTAA TGTTGTTAAC 50463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGGCT TCATGGTAGG ACCATACCAA AGACTTGGTG GTGGTGCTAA TGTTGTTAAC 193 CCTGGATACA CCAAGGGTGA TGGCCTTGGT GCTGAAATTA TTGGCACCTT TGTCCTTGTT 50523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGGATACA CCAAGGGTGA TGGCCTTGGT GCTGAAATTA TTGGCACCTT TGTCCTTGTT 253 TACACTGTTT TTTCAGCCAC TGATGCCAAG AGAAATGCCA GAGACTCACA TGTTCCTGTA 50583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TACACTGTTT TTTCAGCCAC TGATGCCAAG AGAAATGCCA GAGACTCACA TGTTCCT... 310 AGTGTTTTCC TCTTGTAGTT TTATTTCTTC TTTGTGATAT CAAGTTTGCT TATCATGGAT 50643 .......... .......... .......... .......... .......... .......... 310 ATTTACATGT TAATTCTAAG CTAGAGTCTA ACCAGAAATT TTGGAAGTAG TTTCTGAAAA 50703 .......... .......... .......... .......... .......... .......... 310 TTTATCAATG ATATATGTGA CTTTACATTA CATAGTTTGA CGATAAGTGA AGCGTGACAA 50763 .......... .......... .......... .......... .......... .......... 310 GTAAAAATGA TCGTAGGGCC AACTTGTTAC CCTACATTGT CTGATGAGAA GTGAAAAGTG 50823 .......... .......... .......... .......... .......... .......... 310 ACAAGTAAAA ATGACCGTAG GGCCAACTTG TTACCATACA TAGTTTGACG AGAAGTGAAA 50883 .......... .......... .......... .......... .......... .......... 310 AGTGATTTTA TGACAAGTAA AAGTGAACGG AGGGTATTAA ACAACCAACT TGCTATAACA 50943 .......... .......... .......... .......... .......... .......... 310 TGTTAAATTA CTCTAGTAGG GTAAAAGTTC ATTGTACTGT TTAATGTATG TAAAAAGTTG 51003 .......... .......... .......... .......... .......... .......... 310 AAATCTTGCA AGACAAGTGG GTCTTACTTT TTGGTAAGTT AGGCAAAAAT ATTGTTCATG 51063 .......... .......... .......... .......... .......... .......... 310 CTATAGCATG TGGCATGTCT GGTTTTGTCA GCAAGTCCTT TTAGTTGGTG TAGGGTTATG 51123 .......... .......... .......... .......... .......... .......... 310 TTGTGGGCCT AATTGAGTTA GGCTAAAGAT AGTGATGTTC ATGTGATAAG TTATTGTAAC 51183 .......... .......... .......... .......... .......... .......... 310 TGTGGACTTT TTCTTGTCAT GGAGTGGCTC GCCACGTCAC AGTGTTGTGG ACCTTTAGGT 51243 .......... .......... .......... .......... .......... .......... 310 CATCTCCGAT CCATAACACC AACTTTTATA CTAAAAACGT GTATCAAATG CGCTACACTG 51303 .......... .......... .......... .......... .......... .......... 310 ATTGTTCGAC ATAATATTAT ATAAAGAATG ATTTGGTATA TTAGGGAGTT TTCAAAAACG 51363 .......... .......... .......... .......... .......... .......... 310 TAGAATTTAT ACGTTGAGTT AAGTTTCTTT GTATTTTGTG GAGTGGAGAT GTAAATGACA 51423 .......... .......... .......... .......... .......... .......... 310 CCAAATTTCA TATTATTGTA GTGTCCGGAT AATGGTGTGA TACTATTCAT CAACGCCTAT 51483 .......... .......... .......... .......... .......... .......... 310 TTTATATAGA ATGATCACAT AAGAACATTG TTGGCCAGTC TTAGCTCACC ACAACTATCT 51543 .......... .......... .......... .......... .......... .......... 310 TTTTGCGCTT ATGTCTAAGA GAAATCCTTG GAAGACATTT GTCTGATAAT CTTTATGTTT 51603 .......... .......... .......... .......... .......... .......... 310 ATTGTAGATT TTGGCACCAC TTCCTATTGG ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC 51663 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......ATT TTGGCACCAC TTCCTATTGG ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC 363 CATCCCCATC ACCGGAACTG GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA 51723 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CATCCCCATC ACCGGAACTG GCATCAACCC CGCCAGGAGT CTTGGATCTG CTATCATCTA 423 CAACGACGAG CATGCATGGA ATGACCACGT AAGAAAAACA TCTTTCATTC TTTTAAACTG 51783 |||||||||| |||||||||| |||||||| CAACGACGAG CATGCATGGA ATGACCAC.. .......... .......... .......... 451 ACTCGAACAC CACAGTTACT TGAACCAAAA AAAGGAGAGC TTAATCTAAC AAAGGGGTTC 51843 .......... .......... .......... .......... .......... .......... 451 TTGTTTGTTT TTTGTTGTTT TTGAACAGTG GATCTTCTGG GTTGGACCAA TGATTGGAGC 51903 || |||||||||| |||||||||| |||||||||| .......... .......... ........TG GATCTTCTGG GTTGGACCAA TGATTGGAGC 483 TGCTCTTGCT GCTATTTACC ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA 51963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTGCT GCTATTTACC ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA 543 AGTTATCTGT CTTTAAACAA TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT 52023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTATCTGT CTTTAAACAA TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT 603 T 52024 | T 604 hqPGS_C08SLe0084H03.1+_SGN-E348656+ (50285 50580,51611 51751,51872 52024) ******************************************************************************** EST sequence 60 +strand 577 n (File: SGN-E286237+) 1 TGTACTGCTG GTATCTCAGG AGGACACATC AACCCAGCTG TGACCTTTGG TCTTTTCTTG 61 GCAAGGAAAT TGTCCTTGAC CAGGGCTGTT TTCTACATGG TGATGCAGTG CCTTGGTGCA 121 ATCTGTGGTG CTGGTGTTGT GAAGGGCTTC ATGGTAGGAC CATACCAAAG ACTTGGTGGT 181 GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC TGAAATTATT 241 GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG AAATGCCAGA 301 GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT CTTGGTTCAT 361 TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG CCAGGAGTCT TGGAGCTGCT 421 ATCATCTACA ACGACGAGCA TGCATGGAAT GACCACTGGA TCTTCTGGGT TGGACCAATG 481 ATTGGAGCTG CTCTTGCTGC TATTTACCAC CAAATAATTA TCAGAGCTAT GCCATTCCAC 541 AGGTCTTAAG TTATCTGTCT TTAAACAATG GGATTCT Predicted gene structure (within gDNA segment 49522 to 52602): Exon 1 50285 50580 ( 296 n); cDNA 20 315 ( 296 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 316 456 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 51992 ( 121 n); cDNA 457 577 ( 121 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E286237+ 1.000 558 0.967 C PGS_C08SLe0084H03.1+_SGN-E286237+ (50285 50580,51611 51751,51872 51992) Alignment (genomic DNA sequence = upper lines): GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 50344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 79 CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG 50404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG 139 TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC 50464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC 199 CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT 50524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT 259 ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG AGACTCACAT GTTCCTGTAA 50584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG AGACTCACAT GTTCCT.... 315 GTGTTTTCCT CTTGTAGTTT TATTTCTTCT TTGTGATATC AAGTTTGCTT ATCATGGATA 50644 .......... .......... .......... .......... .......... .......... 315 TTTACATGTT AATTCTAAGC TAGAGTCTAA CCAGAAATTT TGGAAGTAGT TTCTGAAAAT 50704 .......... .......... .......... .......... .......... .......... 315 TTATCAATGA TATATGTGAC TTTACATTAC ATAGTTTGAC GATAAGTGAA GCGTGACAAG 50764 .......... .......... .......... .......... .......... .......... 315 TAAAAATGAT CGTAGGGCCA ACTTGTTACC CTACATTGTC TGATGAGAAG TGAAAAGTGA 50824 .......... .......... .......... .......... .......... .......... 315 CAAGTAAAAA TGACCGTAGG GCCAACTTGT TACCATACAT AGTTTGACGA GAAGTGAAAA 50884 .......... .......... .......... .......... .......... .......... 315 GTGATTTTAT GACAAGTAAA AGTGAACGGA GGGTATTAAA CAACCAACTT GCTATAACAT 50944 .......... .......... .......... .......... .......... .......... 315 GTTAAATTAC TCTAGTAGGG TAAAAGTTCA TTGTACTGTT TAATGTATGT AAAAAGTTGA 51004 .......... .......... .......... .......... .......... .......... 315 AATCTTGCAA GACAAGTGGG TCTTACTTTT TGGTAAGTTA GGCAAAAATA TTGTTCATGC 51064 .......... .......... .......... .......... .......... .......... 315 TATAGCATGT GGCATGTCTG GTTTTGTCAG CAAGTCCTTT TAGTTGGTGT AGGGTTATGT 51124 .......... .......... .......... .......... .......... .......... 315 TGTGGGCCTA ATTGAGTTAG GCTAAAGATA GTGATGTTCA TGTGATAAGT TATTGTAACT 51184 .......... .......... .......... .......... .......... .......... 315 GTGGACTTTT TCTTGTCATG GAGTGGCTCG CCACGTCACA GTGTTGTGGA CCTTTAGGTC 51244 .......... .......... .......... .......... .......... .......... 315 ATCTCCGATC CATAACACCA ACTTTTATAC TAAAAACGTG TATCAAATGC GCTACACTGA 51304 .......... .......... .......... .......... .......... .......... 315 TTGTTCGACA TAATATTATA TAAAGAATGA TTTGGTATAT TAGGGAGTTT TCAAAAACGT 51364 .......... .......... .......... .......... .......... .......... 315 AGAATTTATA CGTTGAGTTA AGTTTCTTTG TATTTTGTGG AGTGGAGATG TAAATGACAC 51424 .......... .......... .......... .......... .......... .......... 315 CAAATTTCAT ATTATTGTAG TGTCCGGATA ATGGTGTGAT ACTATTCATC AACGCCTATT 51484 .......... .......... .......... .......... .......... .......... 315 TTATATAGAA TGATCACATA AGAACATTGT TGGCCAGTCT TAGCTCACCA CAACTATCTT 51544 .......... .......... .......... .......... .......... .......... 315 TTTGCGCTTA TGTCTAAGAG AAATCCTTGG AAGACATTTG TCTGATAATC TTTATGTTTA 51604 .......... .......... .......... .......... .......... .......... 315 TTGTAGATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA TTTGGCCACC 51664 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......ATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA TTTGGCCACC 369 ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC TATCATCTAC 51724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC TATCATCTAC 429 AACGACGAGC ATGCATGGAA TGACCACGTA AGAAAAACAT CTTTCATTCT TTTAAACTGA 51784 |||||||||| |||||||||| ||||||| AACGACGAGC ATGCATGGAA TGACCAC... .......... .......... .......... 456 CTCGAACACC ACAGTTACTT GAACCAAAAA AAGGAGAGCT TAATCTAACA AAGGGGTTCT 51844 .......... .......... .......... .......... .......... .......... 456 TGTTTGTTTT TTGTTGTTTT TGAACAGTGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT 51904 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT 489 GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA 51964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA 549 GTTATCTGTC TTTAAACAAT GGGATTCT 51992 |||||||||| |||||||||| |||||||| GTTATCTGTC TTTAAACAAT GGGATTCT 577 hqPGS_C08SLe0084H03.1+_SGN-E286237+ (50285 50580,51611 51751,51872 51992) ******************************************************************************** EST sequence 72 +strand 806 n (File: SGN-E542248+) 1 TTACAAATGG CAAAGGATAT GGAGTATGGA AATGACCAAT ATGCCCCTAG TAAAGACTAC 61 CAAGACCCAC CTCCAGCACC ACTTATTGAC CCTGAGGAAC TTGGAAAATG GTCATTTTAC 121 AGAGCTATTA TTGCTGAATT TATTGCCACA CTTTTGTTTC TATACATTAC TGTACTCACT 181 GTGATTGGCT ACAAGAGCCA AAGTGATGGT GACCAATGTG GTGGTGTTGG CATTCTTGGC 241 ATTGCTTGGG CCTTTGGTGG CATGATTTTT GTTCTTGTTT ATTGCACAGC TGGCATTTCT 301 GGTGGACATA TTAACCCTGC TGTGACATTT GGACTCTTGT TGGCCAGAAA AGTGTCATTA 361 GTGAGAGCAA TTTTTTACAT AGTAGCACAA TGCTTAGGAG CTATTTGTGG TTGTGGTTTA 421 GTGAAGTTAT TTCAAAAGGC TTATTATGTT AAGTATGGTG GTGGTGCTAA TGAACTTGCT 481 GTTGGTTACA ACATAGCCAC TGGATTAGGT GCTGAAATTA TTGGCACTTT TGTTCTTGTT 541 TACACTGTTT TTTCTGCTAC CGATCCCAAG AGAAATGCCA GAGACTCTCA TGTTCCTGTA 601 TTGGCACCAC TTCCAATTGG ATTTGCTGTA TTTATGGTTC ATTTGGCCAC TATTCCAATT 661 ACTGGAACTG GTATTAACCC AGCTAGAAGT TTTGGAGCTG CTGTAATTTA TGGCAAAAAT 721 AAATCATGGG ATGACCAATG GATTTTTTGG GTTGGACCTT TATTGGTGCT GCNATTGCTG 781 CATATATCAT CAATATATTT TGAGAG Predicted gene structure (within gDNA segment 44821 to 53370): Exon 1 49173 49416 ( 244 n); cDNA 52 301 ( 250 n); score: 0.631 Intron 1 49417 50284 ( 868 n); Pd: 0.993 (s: 0.74), Pa: 0.992 (s: 0.80) Exon 2 50285 50580 ( 296 n); cDNA 302 597 ( 296 n); score: 0.718 Intron 2 50581 51610 (1030 n); Pd: 1.000 (s: 0.90), Pa: 0.980 (s: 0.84) Exon 3 51611 51751 ( 141 n); cDNA 598 738 ( 141 n); score: 0.759 Intron 3 51752 51871 ( 120 n); Pd: 0.997 (s: 0.68), Pa: 0.991 (s: 0.80) Exon 4 51872 51941 ( 70 n); cDNA 739 806 ( 68 n); score: 0.757 MATCH C08SLe0084H03.1+ SGN-E542248+ 0.701 751 0.932 C PGS_C08SLe0084H03.1+_SGN-E542248+ (49173 49416,50285 50580,51611 51751,51872 51941) Alignment (genomic DNA sequence = upper lines): AAAGATTACA AAGAGCCACC ACCAGCTCCA TTGTTTGAAC CAGGGGAGTT GTCATCATGG 49232 ||||| ||| |||| ||||| ||||| ||| | |||| | | | ||| | | |||| AAAGACTACC AAGACCCACC TCCAGCACCA CTTATTGACC CTGAGGAACT TGGAAAATGG 111 TCCTTTTACA GGGCTGGTAT TGCAGAGTTC ATGGCAACTT TCTTGTTCTT GTATATCACA 49292 || ||||||| | ||| ||| ||| || || || || || | ||||| | || || || TCATTTTACA GAGCTATTAT TGCTGAATTT ATTGCCACAC TTTTGTTTCT ATACATTACT 171 ATCTTGACTG TTATGGGTCT TAAGAG---A TCTGATAGT- --TTATGTTC TTCAGTGGGT 49346 | | |||| | || || ||||| | |||| || |||| | || || GTACTCACTG TGATTGGCTA CAAGAGCCAA AGTGATGGTG ACCAATGTGG TGGTGTTGGC 231 ATTCAAGGGG TTGCTTGGGC TTTTGGTGGT ATGATCTTTG CTTTGGTCTA CTGTACTGCT 49406 |||| || |||||||||| |||||||| ||||| |||| | | || || || || ||| ATTCTTGGCA TTGCTTGGGC CTTTGGTGGC ATGATTTTTG TTCTTGTTTA TTGCACAGCT 291 GGTATCTCAG GTTGGTTTCA TTGCCCCCCT TTTCATTCTT GATGCTAAAG ATTGTAACTT 49466 || || || | GGCATTTCTG .......... .......... .......... .......... .......... 301 TACTTGTTTT ACTTAAAGAG TGAGTTTGTG TTCATTTATT GTCTACTGAT TGCTTTTGTC 49526 .......... .......... .......... .......... .......... .......... 301 AACTGGTTTT GTGGATTGCT GAGTATGTAG AAGGTAAAGA TTTGTTTTAT TTTTACTGGT 49586 .......... .......... .......... .......... .......... .......... 301 TTAGAGGTTT GAAACATGTT AACTGGTTTG TTTTATGTTT CTTGATTTCT TTGAGTTGAT 49646 .......... .......... .......... .......... .......... .......... 301 TCCCTTCTTT TGCTTAAGAT AGTTGAGCTT GTGTTCACTT ATTGTGTATA TTTGTCGACT 49706 .......... .......... .......... .......... .......... .......... 301 AATTTAATGG ATTCTTGATC TTGAGTATAG TCAATTAAAG ATTCATTTTT CACTGTTTTT 49766 .......... .......... .......... .......... .......... .......... 301 AAAGGTCCAA AACATGTTAC TGGTTTGATT TCTGTGTCTG AGGTACAAAA ATGGAGTTTG 49826 .......... .......... .......... .......... .......... .......... 301 GTGAAGCTTA TTCCTTTACC TCTATACTGT AAAAATATGA CTTCTCTTTA TTTTCCTTCG 49886 .......... .......... .......... .......... .......... .......... 301 TTCACTAATT TTGTATCTCA TACTTTTTAC AACTAATTTG ATGGATCCTT GAAGATTCAA 49946 .......... .......... .......... .......... .......... .......... 301 CCTTTCTTTG TCTTGGAGGT TCAAAACATG TAAATGGTTT ATTTTCTGAA TCTTGTTACT 50006 .......... .......... .......... .......... .......... .......... 301 TTACCCTTTT TATATAGCAA GTGTAACACT TTGTGGCTTA TTTCTTTGTT TGCTTGCTTT 50066 .......... .......... .......... .......... .......... .......... 301 TGATCACCAT ATTTGAGCTT TTAGTTACTT TATTTGTACC ATCATACCTT TTTCAACTAA 50126 .......... .......... .......... .......... .......... .......... 301 TTAATGGGAT CTTGAGTATA ATTCACATAA GGGTATAGTT TTTTCCTGTT TTGAAGTTCA 50186 .......... .......... .......... .......... .......... .......... 301 AAGCATGTTA CATATTTTGT AAAATGAGTC TTTTCCTTCT TTGAATAAGG GTTGGCTTGT 50246 .......... .......... .......... .......... .......... .......... 301 TTCTCTGATG CTAAATTCTG TGTTTTGATA TCAAACAGGA GGACACATCA ACCCAGCTGT 50306 | ||||| || | |||| ||||| .......... .......... .......... ........GT GGACATATTA ACCCTGCTGT 323 GACCTTTGGT CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT 50366 ||| ||||| || || |||| | || ||| | ||| || || || ||| | ||||| || GACATTTGGA CTCTTGTTGG CCAGAAAAGT GTCATTAGTG AGAGCAATTT TTTACATAGT 383 GATGCAGTGC CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA TGGTAGGACC 50426 || ||| | || || | | |||||| |||| | ||| ||| || ||| AGCACAATGC TTAGGAGCTA TTTGTGGTTG TGGTTTAGTG AAGTTATT-T CAAAAGGCTT 442 A-TACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG 50485 | || | ||||||| |||||||||| || ||| |||| | | | || ATTATGTTAA GTATGGTGGT GGTGCTAATG AACTTGCTGT TGGTTACAAC ATAGCCACTG 502 GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 50545 | | ||||| |||||||||| ||||| |||| | |||||||| |||||||||| || || || | GATTAGGTGC TGAAATTATT GGCACTTTTG TTCTTGTTTA CACTGTTTTT TCTGCTACCG 562 ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCTGTAAG TGTTTTCCTC TTGTAGTTTT 50605 || ||||||| |||||||||| ||||| |||| ||||| ATCCCAAGAG AAATGCCAGA GACTCTCATG TTCCT..... .......... .......... 597 ATTTCTTCTT TGTGATATCA AGTTTGCTTA TCATGGATAT TTACATGTTA ATTCTAAGCT 50665 .......... .......... .......... .......... .......... .......... 597 AGAGTCTAAC CAGAAATTTT GGAAGTAGTT TCTGAAAATT TATCAATGAT ATATGTGACT 50725 .......... .......... .......... .......... .......... .......... 597 TTACATTACA TAGTTTGACG ATAAGTGAAG CGTGACAAGT AAAAATGATC GTAGGGCCAA 50785 .......... .......... .......... .......... .......... .......... 597 CTTGTTACCC TACATTGTCT GATGAGAAGT GAAAAGTGAC AAGTAAAAAT GACCGTAGGG 50845 .......... .......... .......... .......... .......... .......... 597 CCAACTTGTT ACCATACATA GTTTGACGAG AAGTGAAAAG TGATTTTATG ACAAGTAAAA 50905 .......... .......... .......... .......... .......... .......... 597 GTGAACGGAG GGTATTAAAC AACCAACTTG CTATAACATG TTAAATTACT CTAGTAGGGT 50965 .......... .......... .......... .......... .......... .......... 597 AAAAGTTCAT TGTACTGTTT AATGTATGTA AAAAGTTGAA ATCTTGCAAG ACAAGTGGGT 51025 .......... .......... .......... .......... .......... .......... 597 CTTACTTTTT GGTAAGTTAG GCAAAAATAT TGTTCATGCT ATAGCATGTG GCATGTCTGG 51085 .......... .......... .......... .......... .......... .......... 597 TTTTGTCAGC AAGTCCTTTT AGTTGGTGTA GGGTTATGTT GTGGGCCTAA TTGAGTTAGG 51145 .......... .......... .......... .......... .......... .......... 597 CTAAAGATAG TGATGTTCAT GTGATAAGTT ATTGTAACTG TGGACTTTTT CTTGTCATGG 51205 .......... .......... .......... .......... .......... .......... 597 AGTGGCTCGC CACGTCACAG TGTTGTGGAC CTTTAGGTCA TCTCCGATCC ATAACACCAA 51265 .......... .......... .......... .......... .......... .......... 597 CTTTTATACT AAAAACGTGT ATCAAATGCG CTACACTGAT TGTTCGACAT AATATTATAT 51325 .......... .......... .......... .......... .......... .......... 597 AAAGAATGAT TTGGTATATT AGGGAGTTTT CAAAAACGTA GAATTTATAC GTTGAGTTAA 51385 .......... .......... .......... .......... .......... .......... 597 GTTTCTTTGT ATTTTGTGGA GTGGAGATGT AAATGACACC AAATTTCATA TTATTGTAGT 51445 .......... .......... .......... .......... .......... .......... 597 GTCCGGATAA TGGTGTGATA CTATTCATCA ACGCCTATTT TATATAGAAT GATCACATAA 51505 .......... .......... .......... .......... .......... .......... 597 GAACATTGTT GGCCAGTCTT AGCTCACCAC AACTATCTTT TTGCGCTTAT GTCTAAGAGA 51565 .......... .......... .......... .......... .......... .......... 597 AATCCTTGGA AGACATTTGT CTGATAATCT TTATGTTTAT TGTAGATTTT GGCACCACTT 51625 | || |||||||||| .......... .......... .......... .......... .....GTATT GGCACCACTT 612 CCTATTGGAT TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC 51685 || ||||||| | || || || |||||||| |||||||| | | || || || |||||||| CCAATTGGAT TTGCTGTATT TATGGTTCAT TTGGCCACTA TTCCAATTAC TGGAACTGGT 672 ATCAACCCCG CCAGGAGTCT TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT 51745 || ||||| | | || ||| | |||||||||| | || || | | | | ||||| || ATTAACCCAG CTAGAAGTTT TGGAGCTGCT GTAATTTATG GCAAAAATAA ATCATGGGAT 732 GACCACGTAA GAAAAACATC TTTCATTCTT TTAAACTGAC TCGAACACCA CAGTTACTTG 51805 ||||| GACCAA.... .......... .......... .......... .......... .......... 738 AACCAAAAAA AGGAGAGCTT AATCTAACAA AGGGGTTCTT GTTTGTTTTT TGTTGTTTTT 51865 .......... .......... .......... .......... .......... .......... 738 GAACAGTGGA TCTTCTGGGT TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCAC 51925 |||| | || ||||| |||||| | ||||| |||| | ||||||| || || || ......TGGA TTTTTTGGGT TGGACC-TTT ATTGGTGCTG CNATTGCTGC -ATATATCAT 790 CAAATAATTA TCAGAG 51941 ||| ||| | |||| CAATATATTT TGAGAG 806 hqPGS_C08SLe0084H03.1+_SGN-E542248+ (50285 50580,51611 51751,51872 51941) ******************************************************************************** EST sequence 138 +strand 468 n (File: SGN-E391287+) 1 CTGTACTGCT GGTATCTCAG GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT 61 GGCAAGGAAA TTGTCCTTGA CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC 121 AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 181 TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT 241 TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG 301 AGACTCACAT GTTCCTATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA 361 TTTGGCCACC ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC 421 TATCATCTAC AACGACTAAC ATGCATGGAA TGACCACTGG ATCTTCTG Predicted gene structure (within gDNA segment 49512 to 52471): Exon 1 50285 50580 ( 296 n); cDNA 21 316 ( 296 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 317 457 ( 141 n); score: 0.986 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 0.96), Pa: 0.991 (s: 0) Exon 3 51872 51882 ( 11 n); cDNA 458 468 ( 11 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E391287+ 0.995 448 0.957 C PGS_C08SLe0084H03.1+_SGN-E391287+ (50285 50580,51611 51751,51872 51882) Alignment (genomic DNA sequence = upper lines): GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 50344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACACAT CAACCCAGCT GTGACCTTTG GTCTTTTCTT GGCAAGGAAA TTGTCCTTGA 80 CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG 50404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGGCTGT TTTCTACATG GTGATGCAGT GCCTTGGTGC AATCTGTGGT GCTGGTGTTG 140 TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC 50464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG TGGTGCTAAT GTTGTTAACC 200 CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT 50524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT TGGCACCTTT GTCCTTGTTT 260 ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG AGACTCACAT GTTCCTGTAA 50584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG AGACTCACAT GTTCCT.... 316 GTGTTTTCCT CTTGTAGTTT TATTTCTTCT TTGTGATATC AAGTTTGCTT ATCATGGATA 50644 .......... .......... .......... .......... .......... .......... 316 TTTACATGTT AATTCTAAGC TAGAGTCTAA CCAGAAATTT TGGAAGTAGT TTCTGAAAAT 50704 .......... .......... .......... .......... .......... .......... 316 TTATCAATGA TATATGTGAC TTTACATTAC ATAGTTTGAC GATAAGTGAA GCGTGACAAG 50764 .......... .......... .......... .......... .......... .......... 316 TAAAAATGAT CGTAGGGCCA ACTTGTTACC CTACATTGTC TGATGAGAAG TGAAAAGTGA 50824 .......... .......... .......... .......... .......... .......... 316 CAAGTAAAAA TGACCGTAGG GCCAACTTGT TACCATACAT AGTTTGACGA GAAGTGAAAA 50884 .......... .......... .......... .......... .......... .......... 316 GTGATTTTAT GACAAGTAAA AGTGAACGGA GGGTATTAAA CAACCAACTT GCTATAACAT 50944 .......... .......... .......... .......... .......... .......... 316 GTTAAATTAC TCTAGTAGGG TAAAAGTTCA TTGTACTGTT TAATGTATGT AAAAAGTTGA 51004 .......... .......... .......... .......... .......... .......... 316 AATCTTGCAA GACAAGTGGG TCTTACTTTT TGGTAAGTTA GGCAAAAATA TTGTTCATGC 51064 .......... .......... .......... .......... .......... .......... 316 TATAGCATGT GGCATGTCTG GTTTTGTCAG CAAGTCCTTT TAGTTGGTGT AGGGTTATGT 51124 .......... .......... .......... .......... .......... .......... 316 TGTGGGCCTA ATTGAGTTAG GCTAAAGATA GTGATGTTCA TGTGATAAGT TATTGTAACT 51184 .......... .......... .......... .......... .......... .......... 316 GTGGACTTTT TCTTGTCATG GAGTGGCTCG CCACGTCACA GTGTTGTGGA CCTTTAGGTC 51244 .......... .......... .......... .......... .......... .......... 316 ATCTCCGATC CATAACACCA ACTTTTATAC TAAAAACGTG TATCAAATGC GCTACACTGA 51304 .......... .......... .......... .......... .......... .......... 316 TTGTTCGACA TAATATTATA TAAAGAATGA TTTGGTATAT TAGGGAGTTT TCAAAAACGT 51364 .......... .......... .......... .......... .......... .......... 316 AGAATTTATA CGTTGAGTTA AGTTTCTTTG TATTTTGTGG AGTGGAGATG TAAATGACAC 51424 .......... .......... .......... .......... .......... .......... 316 CAAATTTCAT ATTATTGTAG TGTCCGGATA ATGGTGTGAT ACTATTCATC AACGCCTATT 51484 .......... .......... .......... .......... .......... .......... 316 TTATATAGAA TGATCACATA AGAACATTGT TGGCCAGTCT TAGCTCACCA CAACTATCTT 51544 .......... .......... .......... .......... .......... .......... 316 TTTGCGCTTA TGTCTAAGAG AAATCCTTGG AAGACATTTG TCTGATAATC TTTATGTTTA 51604 .......... .......... .......... .......... .......... .......... 316 TTGTAGATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA TTTGGCCACC 51664 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......ATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA TTTGGCCACC 370 ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC TATCATCTAC 51724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC TATCATCTAC 430 AACGACGAGC ATGCATGGAA TGACCACGTA AGAAAAACAT CTTTCATTCT TTTAAACTGA 51784 |||||| | | |||||||||| ||||||| AACGACTAAC ATGCATGGAA TGACCAC... .......... .......... .......... 457 CTCGAACACC ACAGTTACTT GAACCAAAAA AAGGAGAGCT TAATCTAACA AAGGGGTTCT 51844 .......... .......... .......... .......... .......... .......... 457 TGTTTGTTTT TTGTTGTTTT TGAACAGTGG ATCTTCTG 51882 ||| |||||||| .......... .......... .......TGG ATCTTCTG 468 hqPGS_C08SLe0084H03.1+_SGN-E391287+ (50285 50580,51611 51751,51872 51882) ******************************************************************************** EST sequence 131 +strand 469 n (File: SGN-E397387+) 1 GACATTTGGT CTGTTCTTAG CAAGGAAACT TTCCTTAACC AGGGCAGTGT TCTACATGGT 61 GATGCAGTGT CTCGGTGCCA TCTGTGGTGC TGGTGTTGTC AAGGGATTCA TGCAAGGTCC 121 GTATCAGAGA CTTGGTGGTG GTGCCAATGT GGTTCAACCC GGATACACGA AAGGTGATGG 181 TCTTGGTGCT GAGATTATTG GGACCTTTGT TCTTGTCTAC ACTGTTTTCT CCGCCACTGA 241 TGCCAAGAGA AACGCTAGAG ATTCACACGT TCCCATTTTG GCACCACTTC CAATTGGATT 301 CGCGGTGTTC TTGGTTCATT TGGCGACCAT CCCAATTACC GGAACTGGCA TCAACCCTGC 361 TAGGAGCCTT GGAGCTGCTA TCATTTTCAA CCAAGACCAA GCTTGGGATG ACCATTGGAT 421 CTTTTGGTTT GGACCATTCA TTGGAGCTGC ACTTTGCTGC AATTTACCA Predicted gene structure (within gDNA segment 49266 to 53180): Exon 1 50307 50580 ( 274 n); cDNA 1 274 ( 274 n); score: 0.861 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 0.86), Pa: 0.980 (s: 0.96) Exon 2 51611 51751 ( 141 n); cDNA 275 415 ( 141 n); score: 0.879 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 0.80), Pa: 0.991 (s: 0.83) Exon 3 51872 51924 ( 53 n); cDNA 416 469 ( 54 n); score: 0.840 MATCH C08SLe0084H03.1+ SGN-E397387+ 0.864 468 0.998 C PGS_C08SLe0084H03.1+_SGN-E397387+ (50307 50580,51611 51751,51872 51924) Alignment (genomic DNA sequence = upper lines): GACCTTTGGT CTTTTCTTGG CAAGGAAATT GTCCTTGACC AGGGCTGTTT TCTACATGGT 50366 ||| |||||| || ||||| | |||||||| | ||||| ||| ||||| || | |||||||||| GACATTTGGT CTGTTCTTAG CAAGGAAACT TTCCTTAACC AGGGCAGTGT TCTACATGGT 60 GATGCAGTGC CTTGGTGCAA TCTGTGGTGC TGGTGTTGTG AAGGGCTTCA TGGTAGGACC 50426 ||||||||| || ||||| | |||||||||| ||||||||| ||||| |||| || ||| || GATGCAGTGT CTCGGTGCCA TCTGTGGTGC TGGTGTTGTC AAGGGATTCA TGCAAGGTCC 120 ATACCAAAGA CTTGGTGGTG GTGCTAATGT TGTTAACCCT GGATACACCA AGGGTGATGG 50486 || || ||| |||||||||| |||| ||||| ||| | || |||||||| | | |||||||| GTATCAGAGA CTTGGTGGTG GTGCCAATGT GGTTCAACCC GGATACACGA AAGGTGATGG 180 CCTTGGTGCT GAAATTATTG GCACCTTTGT CCTTGTTTAC ACTGTTTTTT CAGCCACTGA 50546 ||||||||| || ||||||| | |||||||| ||||| ||| |||||||| | | |||||||| TCTTGGTGCT GAGATTATTG GGACCTTTGT TCTTGTCTAC ACTGTTTTCT CCGCCACTGA 240 TGCCAAGAGA AATGCCAGAG ACTCACATGT TCCTGTAAGT GTTTTCCTCT TGTAGTTTTA 50606 |||||||||| || || |||| | ||||| || ||| TGCCAAGAGA AACGCTAGAG ATTCACACGT TCCC...... .......... .......... 274 TTTCTTCTTT GTGATATCAA GTTTGCTTAT CATGGATATT TACATGTTAA TTCTAAGCTA 50666 .......... .......... .......... .......... .......... .......... 274 GAGTCTAACC AGAAATTTTG GAAGTAGTTT CTGAAAATTT ATCAATGATA TATGTGACTT 50726 .......... .......... .......... .......... .......... .......... 274 TACATTACAT AGTTTGACGA TAAGTGAAGC GTGACAAGTA AAAATGATCG TAGGGCCAAC 50786 .......... .......... .......... .......... .......... .......... 274 TTGTTACCCT ACATTGTCTG ATGAGAAGTG AAAAGTGACA AGTAAAAATG ACCGTAGGGC 50846 .......... .......... .......... .......... .......... .......... 274 CAACTTGTTA CCATACATAG TTTGACGAGA AGTGAAAAGT GATTTTATGA CAAGTAAAAG 50906 .......... .......... .......... .......... .......... .......... 274 TGAACGGAGG GTATTAAACA ACCAACTTGC TATAACATGT TAAATTACTC TAGTAGGGTA 50966 .......... .......... .......... .......... .......... .......... 274 AAAGTTCATT GTACTGTTTA ATGTATGTAA AAAGTTGAAA TCTTGCAAGA CAAGTGGGTC 51026 .......... .......... .......... .......... .......... .......... 274 TTACTTTTTG GTAAGTTAGG CAAAAATATT GTTCATGCTA TAGCATGTGG CATGTCTGGT 51086 .......... .......... .......... .......... .......... .......... 274 TTTGTCAGCA AGTCCTTTTA GTTGGTGTAG GGTTATGTTG TGGGCCTAAT TGAGTTAGGC 51146 .......... .......... .......... .......... .......... .......... 274 TAAAGATAGT GATGTTCATG TGATAAGTTA TTGTAACTGT GGACTTTTTC TTGTCATGGA 51206 .......... .......... .......... .......... .......... .......... 274 GTGGCTCGCC ACGTCACAGT GTTGTGGACC TTTAGGTCAT CTCCGATCCA TAACACCAAC 51266 .......... .......... .......... .......... .......... .......... 274 TTTTATACTA AAAACGTGTA TCAAATGCGC TACACTGATT GTTCGACATA ATATTATATA 51326 .......... .......... .......... .......... .......... .......... 274 AAGAATGATT TGGTATATTA GGGAGTTTTC AAAAACGTAG AATTTATACG TTGAGTTAAG 51386 .......... .......... .......... .......... .......... .......... 274 TTTCTTTGTA TTTTGTGGAG TGGAGATGTA AATGACACCA AATTTCATAT TATTGTAGTG 51446 .......... .......... .......... .......... .......... .......... 274 TCCGGATAAT GGTGTGATAC TATTCATCAA CGCCTATTTT ATATAGAATG ATCACATAAG 51506 .......... .......... .......... .......... .......... .......... 274 AACATTGTTG GCCAGTCTTA GCTCACCACA ACTATCTTTT TGCGCTTATG TCTAAGAGAA 51566 .......... .......... .......... .......... .......... .......... 274 ATCCTTGGAA GACATTTGTC TGATAATCTT TATGTTTATT GTAGATTTTG GCACCACTTC 51626 |||||| |||||||||| .......... .......... .......... .......... ....ATTTTG GCACCACTTC 290 CTATTGGATT CGCAGTGTTC TTGGTTCATT TGGCCACCAT CCCCATCACC GGAACTGGCA 51686 | |||||||| ||| |||||| |||||||||| |||| ||||| ||| || ||| |||||||||| CAATTGGATT CGCGGTGTTC TTGGTTCATT TGGCGACCAT CCCAATTACC GGAACTGGCA 350 TCAACCCCGC CAGGAGTCTT GGAGCTGCTA TCATCTACAA CGACGAGCAT GCATGGAATG 51746 ||||||| || ||||| ||| |||||||||| |||| | ||| | | || || || ||| ||| TCAACCCTGC TAGGAGCCTT GGAGCTGCTA TCATTTTCAA CCAAGACCAA GCTTGGGATG 410 ACCACGTAAG AAAAACATCT TTCATTCTTT TAAACTGACT CGAACACCAC AGTTACTTGA 51806 |||| ACCAT..... .......... .......... .......... .......... .......... 415 ACCAAAAAAA GGAGAGCTTA ATCTAACAAA GGGGTTCTTG TTTGTTTTTT GTTGTTTTTG 51866 .......... .......... .......... .......... .......... .......... 415 AACAGTGGAT CTTCTGGGTT GGACCAATGA TTGGAGCTGC TCTT-GCTGC TATTTACCA 51924 ||||| ||| ||| || |||||| | | |||||||||| ||| ||||| |||||||| .....TGGAT CTTTTGGTTT GGACCATTCA TTGGAGCTGC ACTTTGCTGC AATTTACCA 469 hqPGS_C08SLe0084H03.1+_SGN-E397387+ (50307 50580,51611 51751,51872 51924) ******************************************************************************** EST sequence 56 +strand 649 n (File: SGN-E373697+) 1 ACATTTGGTC TGTTCTTAGC AAGGAAACTT TCCTTAACCA GGGCAGTGTT CTACATGGTG 61 ATGCAGTGTC TCGGTGCCAT CTGTGGTGCT GGTGTTGTCA AGGGATTCAT GCAAGGTCCG 121 TATCAGAGAC TTGGTGGTGG TGCCAATGTG GTTCAACCCG GATACACGAA AGGTGATGGT 181 CTTGGTGCTG AGATTATTGG GACCTTTGTT CTTGTCTACA CTGTTTTCTC CGCCACTGAT 241 GCCAAGAGAA ACGCTAGAGA TTCACACGTT CCCATTTTGG CACCACTTCC AATTGGATTC 301 GCGGTGTTCT TGGTTCATTT GGCGACCATC CCAATTACCG GAACTGGCAT CAACCCTGCT 361 AGGAGCCTTG GAGCTGCTAT CATTTTCAAC CAAGACCAAG CTTGGGATGA CCATTGGATC 421 TTTTGGTTTG GACCATTCAT TGGAGCTGCA CTTGCTGCAA TTTACCATCA AATAATCATC 481 AGAGCAATTC CATTCAAGAG TAGAGCTTAA GAGTCTCANA CCATTTTTCT TTTATCTTTC 541 TAGTGTTTGT CTAAATGTGT ATTTTCTTCA ATTCAAATGT CATTTATGTG AAATAAATTA 601 TCATCAAGTT GTATGTAAAA GCTTCTTTAA ATGAAAATAA TTTTTATTT Predicted gene structure (within gDNA segment 49276 to 54990): Exon 1 50308 50580 ( 273 n); cDNA 1 273 ( 273 n); score: 0.861 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 0.86), Pa: 0.980 (s: 0.96) Exon 2 51611 51751 ( 141 n); cDNA 274 414 ( 141 n); score: 0.879 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 0.80), Pa: 0.991 (s: 0.88) Exon 3 51872 51957 ( 86 n); cDNA 415 500 ( 86 n); score: 0.860 MATCH C08SLe0084H03.1+ SGN-E373697+ 0.866 500 0.770 C PGS_C08SLe0084H03.1+_SGN-E373697+ (50308 50580,51611 51751,51872 51957) Alignment (genomic DNA sequence = upper lines): ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG 50367 || ||||||| | ||||| || ||||||| | ||||| |||| |||| || || |||||||||| ACATTTGGTC TGTTCTTAGC AAGGAAACTT TCCTTAACCA GGGCAGTGTT CTACATGGTG 60 ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA 50427 |||||||| | | ||||| || |||||||||| |||||||| | |||| ||||| | ||| || ATGCAGTGTC TCGGTGCCAT CTGTGGTGCT GGTGTTGTCA AGGGATTCAT GCAAGGTCCG 120 TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC 50487 || || |||| |||||||||| ||| ||||| ||| | || | ||||||| || |||||||| TATCAGAGAC TTGGTGGTGG TGCCAATGTG GTTCAACCCG GATACACGAA AGGTGATGGT 180 CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT 50547 |||||||||| | |||||||| |||||||| ||||| |||| ||||||| || ||||||||| CTTGGTGCTG AGATTATTGG GACCTTTGTT CTTGTCTACA CTGTTTTCTC CGCCACTGAT 240 GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTGTAAGTG TTTTCCTCTT GTAGTTTTAT 50607 |||||||||| | || ||||| ||||| ||| || GCCAAGAGAA ACGCTAGAGA TTCACACGTT CCC....... .......... .......... 273 TTCTTCTTTG TGATATCAAG TTTGCTTATC ATGGATATTT ACATGTTAAT TCTAAGCTAG 50667 .......... .......... .......... .......... .......... .......... 273 AGTCTAACCA GAAATTTTGG AAGTAGTTTC TGAAAATTTA TCAATGATAT ATGTGACTTT 50727 .......... .......... .......... .......... .......... .......... 273 ACATTACATA GTTTGACGAT AAGTGAAGCG TGACAAGTAA AAATGATCGT AGGGCCAACT 50787 .......... .......... .......... .......... .......... .......... 273 TGTTACCCTA CATTGTCTGA TGAGAAGTGA AAAGTGACAA GTAAAAATGA CCGTAGGGCC 50847 .......... .......... .......... .......... .......... .......... 273 AACTTGTTAC CATACATAGT TTGACGAGAA GTGAAAAGTG ATTTTATGAC AAGTAAAAGT 50907 .......... .......... .......... .......... .......... .......... 273 GAACGGAGGG TATTAAACAA CCAACTTGCT ATAACATGTT AAATTACTCT AGTAGGGTAA 50967 .......... .......... .......... .......... .......... .......... 273 AAGTTCATTG TACTGTTTAA TGTATGTAAA AAGTTGAAAT CTTGCAAGAC AAGTGGGTCT 51027 .......... .......... .......... .......... .......... .......... 273 TACTTTTTGG TAAGTTAGGC AAAAATATTG TTCATGCTAT AGCATGTGGC ATGTCTGGTT 51087 .......... .......... .......... .......... .......... .......... 273 TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG GTTATGTTGT GGGCCTAATT GAGTTAGGCT 51147 .......... .......... .......... .......... .......... .......... 273 AAAGATAGTG ATGTTCATGT GATAAGTTAT TGTAACTGTG GACTTTTTCT TGTCATGGAG 51207 .......... .......... .......... .......... .......... .......... 273 TGGCTCGCCA CGTCACAGTG TTGTGGACCT TTAGGTCATC TCCGATCCAT AACACCAACT 51267 .......... .......... .......... .......... .......... .......... 273 TTTATACTAA AAACGTGTAT CAAATGCGCT ACACTGATTG TTCGACATAA TATTATATAA 51327 .......... .......... .......... .......... .......... .......... 273 AGAATGATTT GGTATATTAG GGAGTTTTCA AAAACGTAGA ATTTATACGT TGAGTTAAGT 51387 .......... .......... .......... .......... .......... .......... 273 TTCTTTGTAT TTTGTGGAGT GGAGATGTAA ATGACACCAA ATTTCATATT ATTGTAGTGT 51447 .......... .......... .......... .......... .......... .......... 273 CCGGATAATG GTGTGATACT ATTCATCAAC GCCTATTTTA TATAGAATGA TCACATAAGA 51507 .......... .......... .......... .......... .......... .......... 273 ACATTGTTGG CCAGTCTTAG CTCACCACAA CTATCTTTTT GCGCTTATGT CTAAGAGAAA 51567 .......... .......... .......... .......... .......... .......... 273 TCCTTGGAAG ACATTTGTCT GATAATCTTT ATGTTTATTG TAGATTTTGG CACCACTTCC 51627 ||||||| |||||||||| .......... .......... .......... .......... ...ATTTTGG CACCACTTCC 290 TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT 51687 ||||||||| || ||||||| |||||||||| ||| |||||| || || |||| |||||||||| AATTGGATTC GCGGTGTTCT TGGTTCATTT GGCGACCATC CCAATTACCG GAACTGGCAT 350 CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA 51747 |||||| || ||||| |||| |||||||||| ||| | |||| | || || | | ||| |||| CAACCCTGCT AGGAGCCTTG GAGCTGCTAT CATTTTCAAC CAAGACCAAG CTTGGGATGA 410 CCACGTAAGA AAAACATCTT TCATTCTTTT AAACTGACTC GAACACCACA GTTACTTGAA 51807 ||| CCAT...... .......... .......... .......... .......... .......... 414 CCAAAAAAAG GAGAGCTTAA TCTAACAAAG GGGTTCTTGT TTGTTTTTTG TTGTTTTTGA 51867 .......... .......... .......... .......... .......... .......... 414 ACAGTGGATC TTCTGGGTTG GACCAATGAT TGGAGCTGCT CTTGCTGCTA TTTACCACCA 51927 |||||| || ||| ||| ||||| | || ||||||||| |||||||| | ||||||| || ....TGGATC TTTTGGTTTG GACCATTCAT TGGAGCTGCA CTTGCTGCAA TTTACCATCA 470 AATAATTATC AGAGCTATGC CATTCCACAG 51957 |||||| ||| ||||| || | ||||| | || AATAATCATC AGAGCAATTC CATTCAAGAG 500 hqPGS_C08SLe0084H03.1+_SGN-E373697+ (50308 50580,51611 51751,51872 51957) ******************************************************************************** EST sequence 28 +strand 332 n (File: SGN-E305639+) 1 ACATTTGGTC TGTTCTTAGC AAGGAAACTT TCCTTAACCA GGGCAGTGTT CTACATGGTG 61 ATGCAGTGTC TCGGTGCCAT CTGTGGTGCT GGTGTTGTCA AGGGATTCAT GCAAGGTCCG 121 TATCAGAGAC TTGGTGGTGG TGCCAATGTG GTTCAACCCG GATACACGAA AGGTGATGGT 181 CTTGGTGCTG AGATTATTGG GACCTTTGTT CTTGTCTACA CTGTTTTCTC CGCCACTGAT 241 GCCAAGAGAA ACGCTAGAGA TTCACACGTT CCCATTTTGG CACCACTTCC AATTGGATTC 301 GCGGTGTTCT TGGTTCATTT GGCGACCATC CC Predicted gene structure (within gDNA segment 49276 to 52360): Exon 1 50308 50580 ( 273 n); cDNA 1 273 ( 273 n); score: 0.861 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 0.86), Pa: 0.980 (s: 0.96) Exon 2 51611 51669 ( 59 n); cDNA 274 332 ( 59 n); score: 0.949 MATCH C08SLe0084H03.1+ SGN-E305639+ 0.877 332 1.000 C PGS_C08SLe0084H03.1+_SGN-E305639+ (50308 50580,51611 51669) Alignment (genomic DNA sequence = upper lines): ACCTTTGGTC TTTTCTTGGC AAGGAAATTG TCCTTGACCA GGGCTGTTTT CTACATGGTG 50367 || ||||||| | ||||| || ||||||| | ||||| |||| |||| || || |||||||||| ACATTTGGTC TGTTCTTAGC AAGGAAACTT TCCTTAACCA GGGCAGTGTT CTACATGGTG 60 ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA 50427 |||||||| | | ||||| || |||||||||| |||||||| | |||| ||||| | ||| || ATGCAGTGTC TCGGTGCCAT CTGTGGTGCT GGTGTTGTCA AGGGATTCAT GCAAGGTCCG 120 TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC 50487 || || |||| |||||||||| ||| ||||| ||| | || | ||||||| || |||||||| TATCAGAGAC TTGGTGGTGG TGCCAATGTG GTTCAACCCG GATACACGAA AGGTGATGGT 180 CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT 50547 |||||||||| | |||||||| |||||||| ||||| |||| ||||||| || ||||||||| CTTGGTGCTG AGATTATTGG GACCTTTGTT CTTGTCTACA CTGTTTTCTC CGCCACTGAT 240 GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTGTAAGTG TTTTCCTCTT GTAGTTTTAT 50607 |||||||||| | || ||||| ||||| ||| || GCCAAGAGAA ACGCTAGAGA TTCACACGTT CCC....... .......... .......... 273 TTCTTCTTTG TGATATCAAG TTTGCTTATC ATGGATATTT ACATGTTAAT TCTAAGCTAG 50667 .......... .......... .......... .......... .......... .......... 273 AGTCTAACCA GAAATTTTGG AAGTAGTTTC TGAAAATTTA TCAATGATAT ATGTGACTTT 50727 .......... .......... .......... .......... .......... .......... 273 ACATTACATA GTTTGACGAT AAGTGAAGCG TGACAAGTAA AAATGATCGT AGGGCCAACT 50787 .......... .......... .......... .......... .......... .......... 273 TGTTACCCTA CATTGTCTGA TGAGAAGTGA AAAGTGACAA GTAAAAATGA CCGTAGGGCC 50847 .......... .......... .......... .......... .......... .......... 273 AACTTGTTAC CATACATAGT TTGACGAGAA GTGAAAAGTG ATTTTATGAC AAGTAAAAGT 50907 .......... .......... .......... .......... .......... .......... 273 GAACGGAGGG TATTAAACAA CCAACTTGCT ATAACATGTT AAATTACTCT AGTAGGGTAA 50967 .......... .......... .......... .......... .......... .......... 273 AAGTTCATTG TACTGTTTAA TGTATGTAAA AAGTTGAAAT CTTGCAAGAC AAGTGGGTCT 51027 .......... .......... .......... .......... .......... .......... 273 TACTTTTTGG TAAGTTAGGC AAAAATATTG TTCATGCTAT AGCATGTGGC ATGTCTGGTT 51087 .......... .......... .......... .......... .......... .......... 273 TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG GTTATGTTGT GGGCCTAATT GAGTTAGGCT 51147 .......... .......... .......... .......... .......... .......... 273 AAAGATAGTG ATGTTCATGT GATAAGTTAT TGTAACTGTG GACTTTTTCT TGTCATGGAG 51207 .......... .......... .......... .......... .......... .......... 273 TGGCTCGCCA CGTCACAGTG TTGTGGACCT TTAGGTCATC TCCGATCCAT AACACCAACT 51267 .......... .......... .......... .......... .......... .......... 273 TTTATACTAA AAACGTGTAT CAAATGCGCT ACACTGATTG TTCGACATAA TATTATATAA 51327 .......... .......... .......... .......... .......... .......... 273 AGAATGATTT GGTATATTAG GGAGTTTTCA AAAACGTAGA ATTTATACGT TGAGTTAAGT 51387 .......... .......... .......... .......... .......... .......... 273 TTCTTTGTAT TTTGTGGAGT GGAGATGTAA ATGACACCAA ATTTCATATT ATTGTAGTGT 51447 .......... .......... .......... .......... .......... .......... 273 CCGGATAATG GTGTGATACT ATTCATCAAC GCCTATTTTA TATAGAATGA TCACATAAGA 51507 .......... .......... .......... .......... .......... .......... 273 ACATTGTTGG CCAGTCTTAG CTCACCACAA CTATCTTTTT GCGCTTATGT CTAAGAGAAA 51567 .......... .......... .......... .......... .......... .......... 273 TCCTTGGAAG ACATTTGTCT GATAATCTTT ATGTTTATTG TAGATTTTGG CACCACTTCC 51627 ||||||| |||||||||| .......... .......... .......... .......... ...ATTTTGG CACCACTTCC 290 TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC CC 51669 ||||||||| || ||||||| |||||||||| ||| |||||| || AATTGGATTC GCGGTGTTCT TGGTTCATTT GGCGACCATC CC 332 hqPGS_C08SLe0084H03.1+_SGN-E305639+ (50308 50580,51611 51669) ******************************************************************************** EST sequence 75 +strand 568 n (File: SGN-E299188+) 1 AGGGTGATGC AGTGCCTTGG TGCAATCTGT GGTGCTGGTG TTGTGAAGGG CTTCATGGTA 61 GGACCATACC AAAGACTTGG TGGTGGTGCT AATGTTGTTA ACCCTGGATA CACCAAGGGT 121 GATGGCCTTG GTGCTGAAAT TATTGGCACC TTTGTCCTTG TTTACACTGT TTTTTCAGCC 181 ACTGATGCCA AGAGAAATGC CAGAGACTCA CATGTTCCTA TTTTGGCACC ACTTCCTATT 241 GGATTCGCAG TGTTCTTGGT TCATTTGGCC ACCATCCCCA TCACCGGAAC TGGCATCAAC 301 CCCGCCAGGA GTCTTGGAGC TGCTATCATC TACAACGACG AGCATGCATG GAATGACCAC 361 TGGATCTTCT GGGTTGGACC AATGATTGGA GCTGCTCTTG CTGCTATTTA CCACCAAATA 421 ATTATCAGAG CTATGCCATT CCACAGGTCT TAAGTTATCT GTCTTTAAAC AATGGGATTC 481 TCAAAGACTC AACAGTGTAC TTTTGTCTTC TTTTTTTGGG GGGTTGAATG TTCAAGTTTC 541 TCCTTCAATG TATTTGTAAT GTGGATCT Predicted gene structure (within gDNA segment 49744 to 52689): Exon 1 50364 50580 ( 217 n); cDNA 3 219 ( 217 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 220 360 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52079 ( 208 n); cDNA 361 568 ( 208 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E299188+ 1.000 566 0.996 C PGS_C08SLe0084H03.1+_SGN-E299188+ (50364 50580,51611 51751,51872 52079) Alignment (genomic DNA sequence = upper lines): GGTGATGCAG TGCCTTGGTG CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG 50423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGATGCAG TGCCTTGGTG CAATCTGTGG TGCTGGTGTT GTGAAGGGCT TCATGGTAGG 62 ACCATACCAA AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA 50483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCATACCAA AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA 122 TGGCCTTGGT GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC 50543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCTTGGT GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC 182 TGATGCCAAG AGAAATGCCA GAGACTCACA TGTTCCTGTA AGTGTTTTCC TCTTGTAGTT 50603 |||||||||| |||||||||| |||||||||| ||||||| TGATGCCAAG AGAAATGCCA GAGACTCACA TGTTCCT... .......... .......... 219 TTATTTCTTC TTTGTGATAT CAAGTTTGCT TATCATGGAT ATTTACATGT TAATTCTAAG 50663 .......... .......... .......... .......... .......... .......... 219 CTAGAGTCTA ACCAGAAATT TTGGAAGTAG TTTCTGAAAA TTTATCAATG ATATATGTGA 50723 .......... .......... .......... .......... .......... .......... 219 CTTTACATTA CATAGTTTGA CGATAAGTGA AGCGTGACAA GTAAAAATGA TCGTAGGGCC 50783 .......... .......... .......... .......... .......... .......... 219 AACTTGTTAC CCTACATTGT CTGATGAGAA GTGAAAAGTG ACAAGTAAAA ATGACCGTAG 50843 .......... .......... .......... .......... .......... .......... 219 GGCCAACTTG TTACCATACA TAGTTTGACG AGAAGTGAAA AGTGATTTTA TGACAAGTAA 50903 .......... .......... .......... .......... .......... .......... 219 AAGTGAACGG AGGGTATTAA ACAACCAACT TGCTATAACA TGTTAAATTA CTCTAGTAGG 50963 .......... .......... .......... .......... .......... .......... 219 GTAAAAGTTC ATTGTACTGT TTAATGTATG TAAAAAGTTG AAATCTTGCA AGACAAGTGG 51023 .......... .......... .......... .......... .......... .......... 219 GTCTTACTTT TTGGTAAGTT AGGCAAAAAT ATTGTTCATG CTATAGCATG TGGCATGTCT 51083 .......... .......... .......... .......... .......... .......... 219 GGTTTTGTCA GCAAGTCCTT TTAGTTGGTG TAGGGTTATG TTGTGGGCCT AATTGAGTTA 51143 .......... .......... .......... .......... .......... .......... 219 GGCTAAAGAT AGTGATGTTC ATGTGATAAG TTATTGTAAC TGTGGACTTT TTCTTGTCAT 51203 .......... .......... .......... .......... .......... .......... 219 GGAGTGGCTC GCCACGTCAC AGTGTTGTGG ACCTTTAGGT CATCTCCGAT CCATAACACC 51263 .......... .......... .......... .......... .......... .......... 219 AACTTTTATA CTAAAAACGT GTATCAAATG CGCTACACTG ATTGTTCGAC ATAATATTAT 51323 .......... .......... .......... .......... .......... .......... 219 ATAAAGAATG ATTTGGTATA TTAGGGAGTT TTCAAAAACG TAGAATTTAT ACGTTGAGTT 51383 .......... .......... .......... .......... .......... .......... 219 AAGTTTCTTT GTATTTTGTG GAGTGGAGAT GTAAATGACA CCAAATTTCA TATTATTGTA 51443 .......... .......... .......... .......... .......... .......... 219 GTGTCCGGAT AATGGTGTGA TACTATTCAT CAACGCCTAT TTTATATAGA ATGATCACAT 51503 .......... .......... .......... .......... .......... .......... 219 AAGAACATTG TTGGCCAGTC TTAGCTCACC ACAACTATCT TTTTGCGCTT ATGTCTAAGA 51563 .......... .......... .......... .......... .......... .......... 219 GAAATCCTTG GAAGACATTT GTCTGATAAT CTTTATGTTT ATTGTAGATT TTGGCACCAC 51623 ||| |||||||||| .......... .......... .......... .......... .......ATT TTGGCACCAC 232 TTCCTATTGG ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC CATCCCCATC ACCGGAACTG 51683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTATTGG ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC CATCCCCATC ACCGGAACTG 292 GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA 51743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA 352 ATGACCACGT AAGAAAAACA TCTTTCATTC TTTTAAACTG ACTCGAACAC CACAGTTACT 51803 |||||||| ATGACCAC.. .......... .......... .......... .......... .......... 360 TGAACCAAAA AAAGGAGAGC TTAATCTAAC AAAGGGGTTC TTGTTTGTTT TTTGTTGTTT 51863 .......... .......... .......... .......... .......... .......... 360 TTGAACAGTG GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC 51923 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TG GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC 412 ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA 51983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA 472 TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT 52043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT 532 CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCT 52079 |||||||||| |||||||||| |||||||||| |||||| CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCT 568 hqPGS_C08SLe0084H03.1+_SGN-E299188+ (50364 50580,51611 51751,51872 52079) ******************************************************************************** EST sequence 247 -strand 667 n (File: SGN-E545730-) 1 ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA 61 TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC 121 CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT 181 GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTATTTTGG CACCACTTCC TATTGGATTC 241 GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC 301 AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA CCACTGGATC 361 TTCTGGGTTG GACCAATGAT TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC 421 AGAGCTATGC CATTCCACAG GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCTCAAAG 481 ACTCAACAGT GTACTTTTGT CTTCTTTTTT TGGGGGGTTG AATGTTCAAG TTTCTCCTTC 541 AATGTATTTG TAATGTGGAT CTGTTCCTTC TGTTAAGATG TTCTATTATG TGTGTAAATT 601 ATCAGGTTAT GATAATGTAA TGTACCTTAT CAATGAAGGT TCTTTATTTT TATCTTGAAA 661 AAAAAAA Predicted gene structure (within gDNA segment 49758 to 52883): Exon 1 50368 50580 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 214 354 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52177 ( 306 n); cDNA 355 660 ( 306 n); score: 0.993 MATCH C08SLe0084H03.1+ SGN-E545730- 0.997 660 0.990 C PGS_C08SLe0084H03.1+_SGN-E545730- (50368 50580,51611 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA 50427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGTGCC TTGGTGCAAT CTGTGGTGCT GGTGTTGTGA AGGGCTTCAT GGTAGGACCA 60 TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC 50487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCAAAGAC TTGGTGGTGG TGCTAATGTT GTTAACCCTG GATACACCAA GGGTGATGGC 120 CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT 50547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGTGCTG AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT 180 GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCTGTAAGTG TTTTCCTCTT GTAGTTTTAT 50607 |||||||||| |||||||||| |||||||||| ||| GCCAAGAGAA ATGCCAGAGA CTCACATGTT CCT....... .......... .......... 213 TTCTTCTTTG TGATATCAAG TTTGCTTATC ATGGATATTT ACATGTTAAT TCTAAGCTAG 50667 .......... .......... .......... .......... .......... .......... 213 AGTCTAACCA GAAATTTTGG AAGTAGTTTC TGAAAATTTA TCAATGATAT ATGTGACTTT 50727 .......... .......... .......... .......... .......... .......... 213 ACATTACATA GTTTGACGAT AAGTGAAGCG TGACAAGTAA AAATGATCGT AGGGCCAACT 50787 .......... .......... .......... .......... .......... .......... 213 TGTTACCCTA CATTGTCTGA TGAGAAGTGA AAAGTGACAA GTAAAAATGA CCGTAGGGCC 50847 .......... .......... .......... .......... .......... .......... 213 AACTTGTTAC CATACATAGT TTGACGAGAA GTGAAAAGTG ATTTTATGAC AAGTAAAAGT 50907 .......... .......... .......... .......... .......... .......... 213 GAACGGAGGG TATTAAACAA CCAACTTGCT ATAACATGTT AAATTACTCT AGTAGGGTAA 50967 .......... .......... .......... .......... .......... .......... 213 AAGTTCATTG TACTGTTTAA TGTATGTAAA AAGTTGAAAT CTTGCAAGAC AAGTGGGTCT 51027 .......... .......... .......... .......... .......... .......... 213 TACTTTTTGG TAAGTTAGGC AAAAATATTG TTCATGCTAT AGCATGTGGC ATGTCTGGTT 51087 .......... .......... .......... .......... .......... .......... 213 TTGTCAGCAA GTCCTTTTAG TTGGTGTAGG GTTATGTTGT GGGCCTAATT GAGTTAGGCT 51147 .......... .......... .......... .......... .......... .......... 213 AAAGATAGTG ATGTTCATGT GATAAGTTAT TGTAACTGTG GACTTTTTCT TGTCATGGAG 51207 .......... .......... .......... .......... .......... .......... 213 TGGCTCGCCA CGTCACAGTG TTGTGGACCT TTAGGTCATC TCCGATCCAT AACACCAACT 51267 .......... .......... .......... .......... .......... .......... 213 TTTATACTAA AAACGTGTAT CAAATGCGCT ACACTGATTG TTCGACATAA TATTATATAA 51327 .......... .......... .......... .......... .......... .......... 213 AGAATGATTT GGTATATTAG GGAGTTTTCA AAAACGTAGA ATTTATACGT TGAGTTAAGT 51387 .......... .......... .......... .......... .......... .......... 213 TTCTTTGTAT TTTGTGGAGT GGAGATGTAA ATGACACCAA ATTTCATATT ATTGTAGTGT 51447 .......... .......... .......... .......... .......... .......... 213 CCGGATAATG GTGTGATACT ATTCATCAAC GCCTATTTTA TATAGAATGA TCACATAAGA 51507 .......... .......... .......... .......... .......... .......... 213 ACATTGTTGG CCAGTCTTAG CTCACCACAA CTATCTTTTT GCGCTTATGT CTAAGAGAAA 51567 .......... .......... .......... .......... .......... .......... 213 TCCTTGGAAG ACATTTGTCT GATAATCTTT ATGTTTATTG TAGATTTTGG CACCACTTCC 51627 ||||||| |||||||||| .......... .......... .......... .......... ...ATTTTGG CACCACTTCC 230 TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT 51687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGATTC GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT 290 CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA 51747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCCCGCC AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA 350 CCACGTAAGA AAAACATCTT TCATTCTTTT AAACTGACTC GAACACCACA GTTACTTGAA 51807 |||| CCAC...... .......... .......... .......... .......... .......... 354 CCAAAAAAAG GAGAGCTTAA TCTAACAAAG GGGTTCTTGT TTGTTTTTTG TTGTTTTTGA 51867 .......... .......... .......... .......... .......... .......... 354 ACAGTGGATC TTCTGGGTTG GACCAATGAT TGGAGCTGCT CTTGCTGCTA TTTACCACCA 51927 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TGGATC TTCTGGGTTG GACCAATGAT TGGAGCTGCT CTTGCTGCTA TTTACCACCA 410 AATAATTATC AGAGCTATGC CATTCCACAG GTCTTAAGTT ATCTGTCTTT AAACAATGGG 51987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATTATC AGAGCTATGC CATTCCACAG GTCTTAAGTT ATCTGTCTTT AAACAATGGG 470 ATTCTCAAAG ACTCAACAGT GTACTTTTGT CTTCTTTTTT TGGGGGGTTG AATGTTCAAG 52047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCAAAG ACTCAACAGT GTACTTTTGT CTTCTTTTTT TGGGGGGTTG AATGTTCAAG 530 TTTCTCCTTC AATGTATTTG TAATGTGGAT CTGTTCCTTC TGTTAAGATG TTCTATTATG 52107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCCTTC AATGTATTTG TAATGTGGAT CTGTTCCTTC TGTTAAGATG TTCTATTATG 590 TGTGTAAATT ATCAGGTTAT GATAATGTAA TGTACCTTAT CAATGAAGGT TCTTTATTTT 52167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTAAATT ATCAGGTTAT GATAATGTAA TGTACCTTAT CAATGAAGGT TCTTTATTTT 650 TATCTTTGAA 52177 |||||| || TATCTTGAAA 660 hqPGS_C08SLe0084H03.1+_SGN-E545730- (50368 50580,51611 51751,51872 52177) ******************************************************************************** EST sequence 134 +strand 651 n (File: SGN-E346194+) 1 CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT AGGACCATAC 61 CAAAGACTTG GTGGTGGTGC TAATGTTGTT AACCCTGGAT ACACCAAGGG TGATGGCCTT 121 GGTGCTGAAA TTATTGGCAC CTTTGTCCTT GTTTACACTG TTTTTTCAGC CACTGATGCC 181 AAGAGAAATG CCAGAGACTC ACATGTTCCT ATTTTGGCAC CACTTCCTAT TGGATTCGCA 241 GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA CTGGCATCAA CCCCGCCAGG 301 AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT GGAATGACCA CTGGATCTTC 361 TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT ACCACCAAAT AATTATCAGA 421 GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA CAATGGGATT CTCAAAGACT 481 CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT 541 GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC TATTATGTGT GTAAATTATC 601 ACGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT TTATTTTTAT C Predicted gene structure (within gDNA segment 49771 to 52781): Exon 1 50371 50580 ( 210 n); cDNA 1 210 ( 210 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 211 351 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52171 ( 300 n); cDNA 352 651 ( 300 n); score: 0.997 MATCH C08SLe0084H03.1+ SGN-E346194+ 0.998 651 1.000 C PGS_C08SLe0084H03.1+_SGN-E346194+ (50371 50580,51611 51751,51872 52171) Alignment (genomic DNA sequence = upper lines): CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT AGGACCATAC 50430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGCCTTG GTGCAATCTG TGGTGCTGGT GTTGTGAAGG GCTTCATGGT AGGACCATAC 60 CAAAGACTTG GTGGTGGTGC TAATGTTGTT AACCCTGGAT ACACCAAGGG TGATGGCCTT 50490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGACTTG GTGGTGGTGC TAATGTTGTT AACCCTGGAT ACACCAAGGG TGATGGCCTT 120 GGTGCTGAAA TTATTGGCAC CTTTGTCCTT GTTTACACTG TTTTTTCAGC CACTGATGCC 50550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCTGAAA TTATTGGCAC CTTTGTCCTT GTTTACACTG TTTTTTCAGC CACTGATGCC 180 AAGAGAAATG CCAGAGACTC ACATGTTCCT GTAAGTGTTT TCCTCTTGTA GTTTTATTTC 50610 |||||||||| |||||||||| |||||||||| AAGAGAAATG CCAGAGACTC ACATGTTCCT .......... .......... .......... 210 TTCTTTGTGA TATCAAGTTT GCTTATCATG GATATTTACA TGTTAATTCT AAGCTAGAGT 50670 .......... .......... .......... .......... .......... .......... 210 CTAACCAGAA ATTTTGGAAG TAGTTTCTGA AAATTTATCA ATGATATATG TGACTTTACA 50730 .......... .......... .......... .......... .......... .......... 210 TTACATAGTT TGACGATAAG TGAAGCGTGA CAAGTAAAAA TGATCGTAGG GCCAACTTGT 50790 .......... .......... .......... .......... .......... .......... 210 TACCCTACAT TGTCTGATGA GAAGTGAAAA GTGACAAGTA AAAATGACCG TAGGGCCAAC 50850 .......... .......... .......... .......... .......... .......... 210 TTGTTACCAT ACATAGTTTG ACGAGAAGTG AAAAGTGATT TTATGACAAG TAAAAGTGAA 50910 .......... .......... .......... .......... .......... .......... 210 CGGAGGGTAT TAAACAACCA ACTTGCTATA ACATGTTAAA TTACTCTAGT AGGGTAAAAG 50970 .......... .......... .......... .......... .......... .......... 210 TTCATTGTAC TGTTTAATGT ATGTAAAAAG TTGAAATCTT GCAAGACAAG TGGGTCTTAC 51030 .......... .......... .......... .......... .......... .......... 210 TTTTTGGTAA GTTAGGCAAA AATATTGTTC ATGCTATAGC ATGTGGCATG TCTGGTTTTG 51090 .......... .......... .......... .......... .......... .......... 210 TCAGCAAGTC CTTTTAGTTG GTGTAGGGTT ATGTTGTGGG CCTAATTGAG TTAGGCTAAA 51150 .......... .......... .......... .......... .......... .......... 210 GATAGTGATG TTCATGTGAT AAGTTATTGT AACTGTGGAC TTTTTCTTGT CATGGAGTGG 51210 .......... .......... .......... .......... .......... .......... 210 CTCGCCACGT CACAGTGTTG TGGACCTTTA GGTCATCTCC GATCCATAAC ACCAACTTTT 51270 .......... .......... .......... .......... .......... .......... 210 ATACTAAAAA CGTGTATCAA ATGCGCTACA CTGATTGTTC GACATAATAT TATATAAAGA 51330 .......... .......... .......... .......... .......... .......... 210 ATGATTTGGT ATATTAGGGA GTTTTCAAAA ACGTAGAATT TATACGTTGA GTTAAGTTTC 51390 .......... .......... .......... .......... .......... .......... 210 TTTGTATTTT GTGGAGTGGA GATGTAAATG ACACCAAATT TCATATTATT GTAGTGTCCG 51450 .......... .......... .......... .......... .......... .......... 210 GATAATGGTG TGATACTATT CATCAACGCC TATTTTATAT AGAATGATCA CATAAGAACA 51510 .......... .......... .......... .......... .......... .......... 210 TTGTTGGCCA GTCTTAGCTC ACCACAACTA TCTTTTTGCG CTTATGTCTA AGAGAAATCC 51570 .......... .......... .......... .......... .......... .......... 210 TTGGAAGACA TTTGTCTGAT AATCTTTATG TTTATTGTAG ATTTTGGCAC CACTTCCTAT 51630 |||||||||| |||||||||| .......... .......... .......... .......... ATTTTGGCAC CACTTCCTAT 230 TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA CTGGCATCAA 51690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA CTGGCATCAA 290 CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT GGAATGACCA 51750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT GGAATGACCA 350 CGTAAGAAAA ACATCTTTCA TTCTTTTAAA CTGACTCGAA CACCACAGTT ACTTGAACCA 51810 | C......... .......... .......... .......... .......... .......... 351 AAAAAAGGAG AGCTTAATCT AACAAAGGGG TTCTTGTTTG TTTTTTGTTG TTTTTGAACA 51870 .......... .......... .......... .......... .......... .......... 351 GTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT ACCACCAAAT 51930 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT ACCACCAAAT 410 AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA CAATGGGATT 51990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA CAATGGGATT 470 CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT 52050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT GTTCAAGTTT 530 CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC TATTATGTGT 52110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC TATTATGTGT 590 GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT TTATTTTTAT 52170 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAATTATC ACGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT TTATTTTTAT 650 C 52171 | C 651 hqPGS_C08SLe0084H03.1+_SGN-E346194+ (50371 50580,51611 51751,51872 52171) ******************************************************************************** EST sequence 34 +strand 629 n (File: SGN-E272657+) 1 AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 61 TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT 121 TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG 181 AGACTCACAT GTTCCTATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT TCTTGGTTCA 241 TTTGGCCACC ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC TTGGAGCTGC 301 TATCATCTAC AACGACGAGC ATGCATGGAA TGACCACTGG ATCTTCTGGG TTGGACCAAT 361 GATTGGAGCT GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA 421 CAGGTCTTAA GTTATCTGTC TTTAAACAAT GGGATTCTCA AAGACTCAAC AGTGTACTTT 481 TGTCTTCTTT TTTTGGGGGG TTGAATGTTC AAGTTTCTCC TTCAATGTAT TTGTAATGTG 541 GATCTGTTCC TTCTGTTAAG ATGTTCTATT ATGTGTGTAA AATATCAAGT TATGATAATG 601 TAATGTACCT TATCAATGAA AGGTCTTTA Predicted gene structure (within gDNA segment 49785 to 52854): Exon 1 50385 50580 ( 196 n); cDNA 1 196 ( 196 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 197 337 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52163 ( 292 n); cDNA 338 629 ( 292 n); score: 0.986 MATCH C08SLe0084H03.1+ SGN-E272657+ 0.994 629 1.000 C PGS_C08SLe0084H03.1+_SGN-E272657+ (50385 50580,51611 51751,51872 52163) Alignment (genomic DNA sequence = upper lines): AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 50444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTGTGGT GCTGGTGTTG TGAAGGGCTT CATGGTAGGA CCATACCAAA GACTTGGTGG 60 TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT 50504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGCTAAT GTTGTTAACC CTGGATACAC CAAGGGTGAT GGCCTTGGTG CTGAAATTAT 120 TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG 50564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCACCTTT GTCCTTGTTT ACACTGTTTT TTCAGCCACT GATGCCAAGA GAAATGCCAG 180 AGACTCACAT GTTCCTGTAA GTGTTTTCCT CTTGTAGTTT TATTTCTTCT TTGTGATATC 50624 |||||||||| |||||| AGACTCACAT GTTCCT.... .......... .......... .......... .......... 196 AAGTTTGCTT ATCATGGATA TTTACATGTT AATTCTAAGC TAGAGTCTAA CCAGAAATTT 50684 .......... .......... .......... .......... .......... .......... 196 TGGAAGTAGT TTCTGAAAAT TTATCAATGA TATATGTGAC TTTACATTAC ATAGTTTGAC 50744 .......... .......... .......... .......... .......... .......... 196 GATAAGTGAA GCGTGACAAG TAAAAATGAT CGTAGGGCCA ACTTGTTACC CTACATTGTC 50804 .......... .......... .......... .......... .......... .......... 196 TGATGAGAAG TGAAAAGTGA CAAGTAAAAA TGACCGTAGG GCCAACTTGT TACCATACAT 50864 .......... .......... .......... .......... .......... .......... 196 AGTTTGACGA GAAGTGAAAA GTGATTTTAT GACAAGTAAA AGTGAACGGA GGGTATTAAA 50924 .......... .......... .......... .......... .......... .......... 196 CAACCAACTT GCTATAACAT GTTAAATTAC TCTAGTAGGG TAAAAGTTCA TTGTACTGTT 50984 .......... .......... .......... .......... .......... .......... 196 TAATGTATGT AAAAAGTTGA AATCTTGCAA GACAAGTGGG TCTTACTTTT TGGTAAGTTA 51044 .......... .......... .......... .......... .......... .......... 196 GGCAAAAATA TTGTTCATGC TATAGCATGT GGCATGTCTG GTTTTGTCAG CAAGTCCTTT 51104 .......... .......... .......... .......... .......... .......... 196 TAGTTGGTGT AGGGTTATGT TGTGGGCCTA ATTGAGTTAG GCTAAAGATA GTGATGTTCA 51164 .......... .......... .......... .......... .......... .......... 196 TGTGATAAGT TATTGTAACT GTGGACTTTT TCTTGTCATG GAGTGGCTCG CCACGTCACA 51224 .......... .......... .......... .......... .......... .......... 196 GTGTTGTGGA CCTTTAGGTC ATCTCCGATC CATAACACCA ACTTTTATAC TAAAAACGTG 51284 .......... .......... .......... .......... .......... .......... 196 TATCAAATGC GCTACACTGA TTGTTCGACA TAATATTATA TAAAGAATGA TTTGGTATAT 51344 .......... .......... .......... .......... .......... .......... 196 TAGGGAGTTT TCAAAAACGT AGAATTTATA CGTTGAGTTA AGTTTCTTTG TATTTTGTGG 51404 .......... .......... .......... .......... .......... .......... 196 AGTGGAGATG TAAATGACAC CAAATTTCAT ATTATTGTAG TGTCCGGATA ATGGTGTGAT 51464 .......... .......... .......... .......... .......... .......... 196 ACTATTCATC AACGCCTATT TTATATAGAA TGATCACATA AGAACATTGT TGGCCAGTCT 51524 .......... .......... .......... .......... .......... .......... 196 TAGCTCACCA CAACTATCTT TTTGCGCTTA TGTCTAAGAG AAATCCTTGG AAGACATTTG 51584 .......... .......... .......... .......... .......... .......... 196 TCTGATAATC TTTATGTTTA TTGTAGATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT 51644 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......ATTT TGGCACCACT TCCTATTGGA TTCGCAGTGT 230 TCTTGGTTCA TTTGGCCACC ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC 51704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGGTTCA TTTGGCCACC ATCCCCATCA CCGGAACTGG CATCAACCCC GCCAGGAGTC 290 TTGGAGCTGC TATCATCTAC AACGACGAGC ATGCATGGAA TGACCACGTA AGAAAAACAT 51764 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTGGAGCTGC TATCATCTAC AACGACGAGC ATGCATGGAA TGACCAC... .......... 337 CTTTCATTCT TTTAAACTGA CTCGAACACC ACAGTTACTT GAACCAAAAA AAGGAGAGCT 51824 .......... .......... .......... .......... .......... .......... 337 TAATCTAACA AAGGGGTTCT TGTTTGTTTT TTGTTGTTTT TGAACAGTGG ATCTTCTGGG 51884 ||| |||||||||| .......... .......... .......... .......... .......TGG ATCTTCTGGG 350 TTGGACCAAT GATTGGAGCT GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA 51944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGACCAAT GATTGGAGCT GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA 410 TGCCATTCCA CAGGTCTTAA GTTATCTGTC TTTAAACAAT GGGATTCTCA AAGACTCAAC 52004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCATTCCA CAGGTCTTAA GTTATCTGTC TTTAAACAAT GGGATTCTCA AAGACTCAAC 470 AGTGTACTTT TGTCTTCTTT TTTTGGGGGG TTGAATGTTC AAGTTTCTCC TTCAATGTAT 52064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTACTTT TGTCTTCTTT TTTTGGGGGG TTGAATGTTC AAGTTTCTCC TTCAATGTAT 530 TTGTAATGTG GATCTGTTCC TTCTGTTAAG ATGTTCTATT ATGTGTGTAA ATTATCAGGT 52124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||| || TTGTAATGTG GATCTGTTCC TTCTGTTAAG ATGTTCTATT ATGTGTGTAA AATATCAAGT 590 TATGATAATG TAATGTACCT TATCAATGAA GGTTCTTTA 52163 |||||||||| |||||||||| |||||||||| | |||||| TATGATAATG TAATGTACCT TATCAATGAA AGGTCTTTA 629 hqPGS_C08SLe0084H03.1+_SGN-E272657+ (50385 50580,51611 51751,51872 52163) ******************************************************************************** EST sequence 250 -strand 557 n (File: SGN-E311689-) 1 TGTTGTCAAG GGATTCATGC AAGGTCCGTA TCAGAGACTT GGTGGTGGTG CCAATGTGGT 61 TCAACCCGGA TACACGAAAG GTGATGGTCT TGGTGCTGAG ATTATTGGGA CCTTTGTTCT 121 TGTCTACACT GTTTTCTCCG CCACTGATGC CAAGAGAAAC GCTAGAGATT CACACGTTCC 181 CATTTTGGCA CCACTTCCAA TTGGATTCGC GGTGTTCTTG GTTCATTTGG CGACCATCCC 241 AATTACCGGA ACTGGCATCA ACCCTGCTAG GAGCCTTGGA GCTGCTATCA TTTTCAACCA 301 AGACCAAGCT TGGGATGACC ATTGGATCTT TTGGTTTGGA CCATTCATTG GAGCTGCACT 361 TGCTGCAATT TACCATCAAA TAATCATCAG AGCAATTCCA TTCAAGAGTA GAGCTTAAGA 421 GTCTCAAACC ATTTTTCTTT TATCTTTCTA GTGTTTGTCT AAATGTGTAT TTTCTTCAAT 481 TCAAATGTCA TTTATGTGAA ATAAATTATC ATCAAGTTGT ATGTAAAAGC TTCTTTAAAT 541 GAAAATAATT TTTATTT Predicted gene structure (within gDNA segment 49191 to 54980): Exon 1 50400 50580 ( 181 n); cDNA 1 181 ( 181 n); score: 0.851 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 0.86), Pa: 0.980 (s: 0.96) Exon 2 51611 51751 ( 141 n); cDNA 182 322 ( 141 n); score: 0.879 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 0.80), Pa: 0.991 (s: 0.88) Exon 3 51872 51957 ( 86 n); cDNA 323 408 ( 86 n); score: 0.860 MATCH C08SLe0084H03.1+ SGN-E311689- 0.863 408 0.732 C PGS_C08SLe0084H03.1+_SGN-E311689- (50400 50580,51611 51751,51872 51957) Alignment (genomic DNA sequence = upper lines): TGTTGTGAAG GGCTTCATGG TAGGACCATA CCAAAGACTT GGTGGTGGTG CTAATGTTGT 50459 |||||| ||| || |||||| ||| || || || |||||| |||||||||| | ||||| || TGTTGTCAAG GGATTCATGC AAGGTCCGTA TCAGAGACTT GGTGGTGGTG CCAATGTGGT 60 TAACCCTGGA TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT 50519 | | || ||| ||||| || | ||||||| || ||||||||| |||||||| | ||||||| || TCAACCCGGA TACACGAAAG GTGATGGTCT TGGTGCTGAG ATTATTGGGA CCTTTGTTCT 120 TGTTTACACT GTTTTTTCAG CCACTGATGC CAAGAGAAAT GCCAGAGACT CACATGTTCC 50579 ||| |||||| ||||| || | |||||||||| ||||||||| || ||||| | |||| ||||| TGTCTACACT GTTTTCTCCG CCACTGATGC CAAGAGAAAC GCTAGAGATT CACACGTTCC 180 TGTAAGTGTT TTCCTCTTGT AGTTTTATTT CTTCTTTGTG ATATCAAGTT TGCTTATCAT 50639 C......... .......... .......... .......... .......... .......... 181 GGATATTTAC ATGTTAATTC TAAGCTAGAG TCTAACCAGA AATTTTGGAA GTAGTTTCTG 50699 .......... .......... .......... .......... .......... .......... 181 AAAATTTATC AATGATATAT GTGACTTTAC ATTACATAGT TTGACGATAA GTGAAGCGTG 50759 .......... .......... .......... .......... .......... .......... 181 ACAAGTAAAA ATGATCGTAG GGCCAACTTG TTACCCTACA TTGTCTGATG AGAAGTGAAA 50819 .......... .......... .......... .......... .......... .......... 181 AGTGACAAGT AAAAATGACC GTAGGGCCAA CTTGTTACCA TACATAGTTT GACGAGAAGT 50879 .......... .......... .......... .......... .......... .......... 181 GAAAAGTGAT TTTATGACAA GTAAAAGTGA ACGGAGGGTA TTAAACAACC AACTTGCTAT 50939 .......... .......... .......... .......... .......... .......... 181 AACATGTTAA ATTACTCTAG TAGGGTAAAA GTTCATTGTA CTGTTTAATG TATGTAAAAA 50999 .......... .......... .......... .......... .......... .......... 181 GTTGAAATCT TGCAAGACAA GTGGGTCTTA CTTTTTGGTA AGTTAGGCAA AAATATTGTT 51059 .......... .......... .......... .......... .......... .......... 181 CATGCTATAG CATGTGGCAT GTCTGGTTTT GTCAGCAAGT CCTTTTAGTT GGTGTAGGGT 51119 .......... .......... .......... .......... .......... .......... 181 TATGTTGTGG GCCTAATTGA GTTAGGCTAA AGATAGTGAT GTTCATGTGA TAAGTTATTG 51179 .......... .......... .......... .......... .......... .......... 181 TAACTGTGGA CTTTTTCTTG TCATGGAGTG GCTCGCCACG TCACAGTGTT GTGGACCTTT 51239 .......... .......... .......... .......... .......... .......... 181 AGGTCATCTC CGATCCATAA CACCAACTTT TATACTAAAA ACGTGTATCA AATGCGCTAC 51299 .......... .......... .......... .......... .......... .......... 181 ACTGATTGTT CGACATAATA TTATATAAAG AATGATTTGG TATATTAGGG AGTTTTCAAA 51359 .......... .......... .......... .......... .......... .......... 181 AACGTAGAAT TTATACGTTG AGTTAAGTTT CTTTGTATTT TGTGGAGTGG AGATGTAAAT 51419 .......... .......... .......... .......... .......... .......... 181 GACACCAAAT TTCATATTAT TGTAGTGTCC GGATAATGGT GTGATACTAT TCATCAACGC 51479 .......... .......... .......... .......... .......... .......... 181 CTATTTTATA TAGAATGATC ACATAAGAAC ATTGTTGGCC AGTCTTAGCT CACCACAACT 51539 .......... .......... .......... .......... .......... .......... 181 ATCTTTTTGC GCTTATGTCT AAGAGAAATC CTTGGAAGAC ATTTGTCTGA TAATCTTTAT 51599 .......... .......... .......... .......... .......... .......... 181 GTTTATTGTA GATTTTGGCA CCACTTCCTA TTGGATTCGC AGTGTTCTTG GTTCATTTGG 51659 ||||||||| |||||||| | |||||||||| ||||||||| |||||||||| .......... .ATTTTGGCA CCACTTCCAA TTGGATTCGC GGTGTTCTTG GTTCATTTGG 230 CCACCATCCC CATCACCGGA ACTGGCATCA ACCCCGCCAG GAGTCTTGGA GCTGCTATCA 51719 | |||||||| || |||||| |||||||||| |||| || || ||| |||||| |||||||||| CGACCATCCC AATTACCGGA ACTGGCATCA ACCCTGCTAG GAGCCTTGGA GCTGCTATCA 290 TCTACAACGA CGAGCATGCA TGGAATGACC ACGTAAGAAA AACATCTTTC ATTCTTTTAA 51779 | | |||| | || || || ||| |||||| | TTTTCAACCA AGACCAAGCT TGGGATGACC AT........ .......... .......... 322 ACTGACTCGA ACACCACAGT TACTTGAACC AAAAAAAGGA GAGCTTAATC TAACAAAGGG 51839 .......... .......... .......... .......... .......... .......... 322 GTTCTTGTTT GTTTTTTGTT GTTTTTGAAC AGTGGATCTT CTGGGTTGGA CCAATGATTG 51899 |||||||| ||| ||||| ||| | |||| .......... .......... .......... ..TGGATCTT TTGGTTTGGA CCATTCATTG 350 GAGCTGCTCT TGCTGCTATT TACCACCAAA TAATTATCAG AGCTATGCCA TTCCACAG 51957 ||||||| || |||||| ||| ||||| |||| |||| ||||| ||| || ||| ||| | || GAGCTGCACT TGCTGCAATT TACCATCAAA TAATCATCAG AGCAATTCCA TTCAAGAG 408 hqPGS_C08SLe0084H03.1+_SGN-E311689- (50400 50580,51611 51751,51872 51957) ******************************************************************************** EST sequence 194 -strand 597 n (File: SGN-E373696-) 1 TTGTCAAGGG ATTCATGCAA GGTCCGTATC AAAGACTTGG TGGTGGGGCC AATGTGGTTC 61 AACCCGGATA CACAAAAGGT AATGGTTTTG GTGCTGAAAT TATTGGGACC TTTGTTTTTG 121 TTTACACTGT TTTTTCCGCC CCTGATGCCA AAAAAAACGC TAAAAATTCA CACGTTCCCA 181 TTTTGGCCCC CCTTCCAATT GGATTCGCGG TGTTTTTGGT TCATTTGGCG ACCATCCCAA 241 TTACCGGAAC TGGCATCAAC CCTGCTAGGA GCCTTGGAGC TGCTATCATT TTCAACCAAA 301 ACCAAGCTTG GGATGACCAT TGGATTTTTT GGTTTGGACC ATTCATTGGA GCTGCCCTTG 361 CTGCAATTTA CCATCAAATA ATCATCAAAG CAATTCCATT CAAAAGTAAA GCTTAAAAGT 421 TTCAAACCAT TTTTTTTTTA TTTTTTTAGT GTTTGTTTAA ATGTGTATTT TTTTCAATTC 481 AAATGTCATT TATGTGAAAT AAATTATCAT CAAGTTGTAT GTAAAAGCTT TTTTAAATGA 541 AAATAATTTT TTTTTTTTAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 49009 to 56000): Exon 1 50402 50580 ( 179 n); cDNA 1 179 ( 179 n); score: 0.821 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 0.78), Pa: 0.980 (s: 0.90) Exon 2 51611 51751 ( 141 n); cDNA 180 320 ( 141 n); score: 0.851 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 0.78), Pa: 0.991 (s: 0.86) Exon 3 51872 51957 ( 86 n); cDNA 321 406 ( 86 n); score: 0.837 Intron 3 51958 52035 ( 78 n); Pd: 0.812 (s: 0.84), Pa: 0.000 (s: 0.52) Exon 4 52036 52155 ( 120 n); cDNA 407 514 ( 108 n); score: 0.592 Intron 4 52156 52201 ( 46 n); Pd: 0.000 (s: 0.62), Pa: 0.651 (s: 0.52) Exon 5 52202 52286 ( 85 n); cDNA 515 597 ( 83 n); score: 0.588 MATCH C08SLe0084H03.1+ SGN-E373696- 0.753 611 1.023 C PGS_C08SLe0084H03.1+_SGN-E373696- (50402 50580,51611 51751,51872 51957,52036 52155,52202 52286) Alignment (genomic DNA sequence = upper lines): TTGTGAAGGG CTTCATGGTA GGACCATACC AAAGACTTGG TGGTGGTGCT AATGTTGTTA 50461 |||| ||||| |||||| | || || || | |||||||||| |||||| || ||||| ||| TTGTCAAGGG ATTCATGCAA GGTCCGTATC AAAGACTTGG TGGTGGGGCC AATGTGGTTC 60 ACCCTGGATA CACCAAGGGT GATGGCCTTG GTGCTGAAAT TATTGGCACC TTTGTCCTTG 50521 | || ||||| ||| || ||| |||| ||| |||||||||| |||||| ||| ||||| ||| AACCCGGATA CACAAAAGGT AATGGTTTTG GTGCTGAAAT TATTGGGACC TTTGTTTTTG 120 TTTACACTGT TTTTTCAGCC ACTGATGCCA AGAGAAATGC CAGAGACTCA CATGTTCCTG 50581 |||||||||| |||||| ||| ||||||||| | | ||| || | | | ||| || ||||| TTTACACTGT TTTTTCCGCC CCTGATGCCA AAAAAAACGC TAAAAATTCA CACGTTCCC. 179 TAAGTGTTTT CCTCTTGTAG TTTTATTTCT TCTTTGTGAT ATCAAGTTTG CTTATCATGG 50641 .......... .......... .......... .......... .......... .......... 179 ATATTTACAT GTTAATTCTA AGCTAGAGTC TAACCAGAAA TTTTGGAAGT AGTTTCTGAA 50701 .......... .......... .......... .......... .......... .......... 179 AATTTATCAA TGATATATGT GACTTTACAT TACATAGTTT GACGATAAGT GAAGCGTGAC 50761 .......... .......... .......... .......... .......... .......... 179 AAGTAAAAAT GATCGTAGGG CCAACTTGTT ACCCTACATT GTCTGATGAG AAGTGAAAAG 50821 .......... .......... .......... .......... .......... .......... 179 TGACAAGTAA AAATGACCGT AGGGCCAACT TGTTACCATA CATAGTTTGA CGAGAAGTGA 50881 .......... .......... .......... .......... .......... .......... 179 AAAGTGATTT TATGACAAGT AAAAGTGAAC GGAGGGTATT AAACAACCAA CTTGCTATAA 50941 .......... .......... .......... .......... .......... .......... 179 CATGTTAAAT TACTCTAGTA GGGTAAAAGT TCATTGTACT GTTTAATGTA TGTAAAAAGT 51001 .......... .......... .......... .......... .......... .......... 179 TGAAATCTTG CAAGACAAGT GGGTCTTACT TTTTGGTAAG TTAGGCAAAA ATATTGTTCA 51061 .......... .......... .......... .......... .......... .......... 179 TGCTATAGCA TGTGGCATGT CTGGTTTTGT CAGCAAGTCC TTTTAGTTGG TGTAGGGTTA 51121 .......... .......... .......... .......... .......... .......... 179 TGTTGTGGGC CTAATTGAGT TAGGCTAAAG ATAGTGATGT TCATGTGATA AGTTATTGTA 51181 .......... .......... .......... .......... .......... .......... 179 ACTGTGGACT TTTTCTTGTC ATGGAGTGGC TCGCCACGTC ACAGTGTTGT GGACCTTTAG 51241 .......... .......... .......... .......... .......... .......... 179 GTCATCTCCG ATCCATAACA CCAACTTTTA TACTAAAAAC GTGTATCAAA TGCGCTACAC 51301 .......... .......... .......... .......... .......... .......... 179 TGATTGTTCG ACATAATATT ATATAAAGAA TGATTTGGTA TATTAGGGAG TTTTCAAAAA 51361 .......... .......... .......... .......... .......... .......... 179 CGTAGAATTT ATACGTTGAG TTAAGTTTCT TTGTATTTTG TGGAGTGGAG ATGTAAATGA 51421 .......... .......... .......... .......... .......... .......... 179 CACCAAATTT CATATTATTG TAGTGTCCGG ATAATGGTGT GATACTATTC ATCAACGCCT 51481 .......... .......... .......... .......... .......... .......... 179 ATTTTATATA GAATGATCAC ATAAGAACAT TGTTGGCCAG TCTTAGCTCA CCACAACTAT 51541 .......... .......... .......... .......... .......... .......... 179 CTTTTTGCGC TTATGTCTAA GAGAAATCCT TGGAAGACAT TTGTCTGATA ATCTTTATGT 51601 .......... .......... .......... .......... .......... .......... 179 TTATTGTAGA TTTTGGCACC ACTTCCTATT GGATTCGCAG TGTTCTTGGT TCATTTGGCC 51661 | ||||||| || ||||| ||| |||||||| | |||| ||||| ||||||||| .........A TTTTGGCCCC CCTTCCAATT GGATTCGCGG TGTTTTTGGT TCATTTGGCG 230 ACCATCCCCA TCACCGGAAC TGGCATCAAC CCCGCCAGGA GTCTTGGAGC TGCTATCATC 51721 |||||||| | | |||||||| |||||||||| || || |||| | |||||||| ||||||||| ACCATCCCAA TTACCGGAAC TGGCATCAAC CCTGCTAGGA GCCTTGGAGC TGCTATCATT 290 TACAACGACG AGCATGCATG GAATGACCAC GTAAGAAAAA CATCTTTCAT TCTTTTAAAC 51781 | |||| | | || || || | ||||||| TTCAACCAAA ACCAAGCTTG GGATGACCAT .......... .......... .......... 320 TGACTCGAAC ACCACAGTTA CTTGAACCAA AAAAAGGAGA GCTTAATCTA ACAAAGGGGT 51841 .......... .......... .......... .......... .......... .......... 320 TCTTGTTTGT TTTTTGTTGT TTTTGAACAG TGGATCTTCT GGGTTGGACC AATGATTGGA 51901 ||||| || | || ||||||| | | |||||| .......... .......... .......... TGGATTTTTT GGTTTGGACC ATTCATTGGA 350 GCTGCTCTTG CTGCTATTTA CCACCAAATA ATTATCAGAG CTATGCCATT CCACAGGTCT 51961 ||||| |||| |||| ||||| ||| |||||| || |||| || | || ||||| | | || GCTGCCCTTG CTGCAATTTA CCATCAAATA ATCATCAAAG CAATTCCATT CAAAAG.... 406 TAAGTTATCT GTCTTTAAAC AATGGGATTC TCAAAGACTC AACAGTGTAC TTTTGTCTTC 52021 .......... .......... .......... .......... .......... .......... 406 TTTTTTTGGG GGGTTGAATG TTCAAGTTTC TCCTTCAATG TATTTGTAAT GTGGATCTGT 52081 | || || || || || | || | ||| | || | | | .......... ....TAAAGC TTAAAAGTT- TCAAACCATT TTTTTTTTAT -T-TTTTTAG 449 TCCTTCTGTT AAGATGTTCT ATTATGTGTG TAAATTATCA GGTTATGATA ATGTAATGTA 52141 | || |||| | ||| | | ||| | | | | |||| | || || | |||| | || T-GTT-TGTT TAAATG-TGT ATT-T-T-TT TCAATTCAAA TGTCAT--TT ATGTGAAATA 501 CCTTATCAAT GAAGGTTCTT TATTTTTATC TTTGAACCGC GTCTCAATTT GTTTTTCTAG 52201 ||||| || ||| AATTATC-AT CAAG...... .......... .......... .......... .......... 514 TTTTGACTTG ATACGGAGTT GAGAAACAAA CTGATTGTAC TTTTAGAGAC GGACTAGAAA 52261 || | | | | | | || || ||| | ||| | |||| | | | | ||| TTGT-A-TGT AAAAGCTTTT TTAAATGAAA ATAATTTTTT TTTTTTAAAA AAAAAAAAAA 572 GAAAAAAAAG ACAAACAAAT TAAAA 52286 |||||||| | ||| ||| |||| AAAAAAAAAA AAAAAAAAAA AAAAA 597 hqPGS_C08SLe0084H03.1+_SGN-E373696- (50402 50580,51611 51751,51872 51957) ******************************************************************************** EST sequence 173 -strand 584 n (File: SGN-E305291-) 1 CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG 61 GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 121 ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT 181 TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG 241 CCAGGAGTCT TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT GACCACTGGA 301 TCTTCTGGGT TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCAC CAAATAATTA 361 TCAGAGCTAT GCCATTCCAC AGGTCTTAAG TTATCTGTCT TTAAACAATG GGATTCTCAA 421 AGACTCAACA GTGTACTTTT GTCTTCTTTT TTTGGGGGGT TGAATGTTCA AGTTTCTCCT 481 TCAATGTATT TGTAATGTGG ATCTGTTCCT TCTGTTAAGA TGTTCTATTA TGTGTGTAAA 541 TTATCAGGTT ATGATAATGT AATGTACCTT ATCAATGAAG GTTC Predicted gene structure (within gDNA segment 49816 to 52759): Exon 1 50426 50580 ( 155 n); cDNA 1 155 ( 155 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 156 296 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52159 ( 288 n); cDNA 297 584 ( 288 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E305291- 1.000 584 1.000 C PGS_C08SLe0084H03.1+_SGN-E305291- (50426 50580,51611 51751,51872 52159) Alignment (genomic DNA sequence = upper lines): CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG 50485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCAAAG ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG 60 GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 50545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTGGTGC TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG 120 ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCTGTAAG TGTTTTCCTC TTGTAGTTTT 50605 |||||||||| |||||||||| |||||||||| ||||| ATGCCAAGAG AAATGCCAGA GACTCACATG TTCCT..... .......... .......... 155 ATTTCTTCTT TGTGATATCA AGTTTGCTTA TCATGGATAT TTACATGTTA ATTCTAAGCT 50665 .......... .......... .......... .......... .......... .......... 155 AGAGTCTAAC CAGAAATTTT GGAAGTAGTT TCTGAAAATT TATCAATGAT ATATGTGACT 50725 .......... .......... .......... .......... .......... .......... 155 TTACATTACA TAGTTTGACG ATAAGTGAAG CGTGACAAGT AAAAATGATC GTAGGGCCAA 50785 .......... .......... .......... .......... .......... .......... 155 CTTGTTACCC TACATTGTCT GATGAGAAGT GAAAAGTGAC AAGTAAAAAT GACCGTAGGG 50845 .......... .......... .......... .......... .......... .......... 155 CCAACTTGTT ACCATACATA GTTTGACGAG AAGTGAAAAG TGATTTTATG ACAAGTAAAA 50905 .......... .......... .......... .......... .......... .......... 155 GTGAACGGAG GGTATTAAAC AACCAACTTG CTATAACATG TTAAATTACT CTAGTAGGGT 50965 .......... .......... .......... .......... .......... .......... 155 AAAAGTTCAT TGTACTGTTT AATGTATGTA AAAAGTTGAA ATCTTGCAAG ACAAGTGGGT 51025 .......... .......... .......... .......... .......... .......... 155 CTTACTTTTT GGTAAGTTAG GCAAAAATAT TGTTCATGCT ATAGCATGTG GCATGTCTGG 51085 .......... .......... .......... .......... .......... .......... 155 TTTTGTCAGC AAGTCCTTTT AGTTGGTGTA GGGTTATGTT GTGGGCCTAA TTGAGTTAGG 51145 .......... .......... .......... .......... .......... .......... 155 CTAAAGATAG TGATGTTCAT GTGATAAGTT ATTGTAACTG TGGACTTTTT CTTGTCATGG 51205 .......... .......... .......... .......... .......... .......... 155 AGTGGCTCGC CACGTCACAG TGTTGTGGAC CTTTAGGTCA TCTCCGATCC ATAACACCAA 51265 .......... .......... .......... .......... .......... .......... 155 CTTTTATACT AAAAACGTGT ATCAAATGCG CTACACTGAT TGTTCGACAT AATATTATAT 51325 .......... .......... .......... .......... .......... .......... 155 AAAGAATGAT TTGGTATATT AGGGAGTTTT CAAAAACGTA GAATTTATAC GTTGAGTTAA 51385 .......... .......... .......... .......... .......... .......... 155 GTTTCTTTGT ATTTTGTGGA GTGGAGATGT AAATGACACC AAATTTCATA TTATTGTAGT 51445 .......... .......... .......... .......... .......... .......... 155 GTCCGGATAA TGGTGTGATA CTATTCATCA ACGCCTATTT TATATAGAAT GATCACATAA 51505 .......... .......... .......... .......... .......... .......... 155 GAACATTGTT GGCCAGTCTT AGCTCACCAC AACTATCTTT TTGCGCTTAT GTCTAAGAGA 51565 .......... .......... .......... .......... .......... .......... 155 AATCCTTGGA AGACATTTGT CTGATAATCT TTATGTTTAT TGTAGATTTT GGCACCACTT 51625 ||||| |||||||||| .......... .......... .......... .......... .....ATTTT GGCACCACTT 170 CCTATTGGAT TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC 51685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTGGAT TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC 230 ATCAACCCCG CCAGGAGTCT TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT 51745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACCCCG CCAGGAGTCT TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT 290 GACCACGTAA GAAAAACATC TTTCATTCTT TTAAACTGAC TCGAACACCA CAGTTACTTG 51805 |||||| GACCAC.... .......... .......... .......... .......... .......... 296 AACCAAAAAA AGGAGAGCTT AATCTAACAA AGGGGTTCTT GTTTGTTTTT TGTTGTTTTT 51865 .......... .......... .......... .......... .......... .......... 296 GAACAGTGGA TCTTCTGGGT TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCAC 51925 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......TGGA TCTTCTGGGT TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCAC 350 CAAATAATTA TCAGAGCTAT GCCATTCCAC AGGTCTTAAG TTATCTGTCT TTAAACAATG 51985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATAATTA TCAGAGCTAT GCCATTCCAC AGGTCTTAAG TTATCTGTCT TTAAACAATG 410 GGATTCTCAA AGACTCAACA GTGTACTTTT GTCTTCTTTT TTTGGGGGGT TGAATGTTCA 52045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCTCAA AGACTCAACA GTGTACTTTT GTCTTCTTTT TTTGGGGGGT TGAATGTTCA 470 AGTTTCTCCT TCAATGTATT TGTAATGTGG ATCTGTTCCT TCTGTTAAGA TGTTCTATTA 52105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTCTCCT TCAATGTATT TGTAATGTGG ATCTGTTCCT TCTGTTAAGA TGTTCTATTA 530 TGTGTGTAAA TTATCAGGTT ATGATAATGT AATGTACCTT ATCAATGAAG GTTC 52159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TGTGTGTAAA TTATCAGGTT ATGATAATGT AATGTACCTT ATCAATGAAG GTTC 584 hqPGS_C08SLe0084H03.1+_SGN-E305291- (50426 50580,51611 51751,51872 52159) ******************************************************************************** EST sequence 71 +strand 599 n (File: SGN-E352248+) 1 AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 61 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 121 GAGAAATGCC AGAGACTCAC ATGTTCCTAT TTTGGCACCA CTTCCTATTG GATTCGCAGT 181 GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC CCGCCAGGAG 241 TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACT GGATCTTCTG 301 GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA TTATCAGAGC 361 TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT CAAAGACTCA 421 ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT CCTTCAATGT 481 ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT AAATTATCAG 541 GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT ATTTTTTATC TTGAAAAAA Predicted gene structure (within gDNA segment 49833 to 52908): Exon 1 50433 50580 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 149 289 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52177 ( 306 n); cDNA 290 595 ( 306 n); score: 0.987 MATCH C08SLe0084H03.1+ SGN-E352248+ 0.993 595 0.993 C PGS_C08SLe0084H03.1+_SGN-E352248+ (50433 50580,51611 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 50492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 60 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 50552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 120 GAGAAATGCC AGAGACTCAC ATGTTCCTGT AAGTGTTTTC CTCTTGTAGT TTTATTTCTT 50612 |||||||||| |||||||||| |||||||| GAGAAATGCC AGAGACTCAC ATGTTCCT.. .......... .......... .......... 148 CTTTGTGATA TCAAGTTTGC TTATCATGGA TATTTACATG TTAATTCTAA GCTAGAGTCT 50672 .......... .......... .......... .......... .......... .......... 148 AACCAGAAAT TTTGGAAGTA GTTTCTGAAA ATTTATCAAT GATATATGTG ACTTTACATT 50732 .......... .......... .......... .......... .......... .......... 148 ACATAGTTTG ACGATAAGTG AAGCGTGACA AGTAAAAATG ATCGTAGGGC CAACTTGTTA 50792 .......... .......... .......... .......... .......... .......... 148 CCCTACATTG TCTGATGAGA AGTGAAAAGT GACAAGTAAA AATGACCGTA GGGCCAACTT 50852 .......... .......... .......... .......... .......... .......... 148 GTTACCATAC ATAGTTTGAC GAGAAGTGAA AAGTGATTTT ATGACAAGTA AAAGTGAACG 50912 .......... .......... .......... .......... .......... .......... 148 GAGGGTATTA AACAACCAAC TTGCTATAAC ATGTTAAATT ACTCTAGTAG GGTAAAAGTT 50972 .......... .......... .......... .......... .......... .......... 148 CATTGTACTG TTTAATGTAT GTAAAAAGTT GAAATCTTGC AAGACAAGTG GGTCTTACTT 51032 .......... .......... .......... .......... .......... .......... 148 TTTGGTAAGT TAGGCAAAAA TATTGTTCAT GCTATAGCAT GTGGCATGTC TGGTTTTGTC 51092 .......... .......... .......... .......... .......... .......... 148 AGCAAGTCCT TTTAGTTGGT GTAGGGTTAT GTTGTGGGCC TAATTGAGTT AGGCTAAAGA 51152 .......... .......... .......... .......... .......... .......... 148 TAGTGATGTT CATGTGATAA GTTATTGTAA CTGTGGACTT TTTCTTGTCA TGGAGTGGCT 51212 .......... .......... .......... .......... .......... .......... 148 CGCCACGTCA CAGTGTTGTG GACCTTTAGG TCATCTCCGA TCCATAACAC CAACTTTTAT 51272 .......... .......... .......... .......... .......... .......... 148 ACTAAAAACG TGTATCAAAT GCGCTACACT GATTGTTCGA CATAATATTA TATAAAGAAT 51332 .......... .......... .......... .......... .......... .......... 148 GATTTGGTAT ATTAGGGAGT TTTCAAAAAC GTAGAATTTA TACGTTGAGT TAAGTTTCTT 51392 .......... .......... .......... .......... .......... .......... 148 TGTATTTTGT GGAGTGGAGA TGTAAATGAC ACCAAATTTC ATATTATTGT AGTGTCCGGA 51452 .......... .......... .......... .......... .......... .......... 148 TAATGGTGTG ATACTATTCA TCAACGCCTA TTTTATATAG AATGATCACA TAAGAACATT 51512 .......... .......... .......... .......... .......... .......... 148 GTTGGCCAGT CTTAGCTCAC CACAACTATC TTTTTGCGCT TATGTCTAAG AGAAATCCTT 51572 .......... .......... .......... .......... .......... .......... 148 GGAAGACATT TGTCTGATAA TCTTTATGTT TATTGTAGAT TTTGGCACCA CTTCCTATTG 51632 || |||||||||| |||||||||| .......... .......... .......... ........AT TTTGGCACCA CTTCCTATTG 170 GATTCGCAGT GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC 51692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCGCAGT GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC 230 CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACG 51752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCAC. 289 TAAGAAAAAC ATCTTTCATT CTTTTAAACT GACTCGAACA CCACAGTTAC TTGAACCAAA 51812 .......... .......... .......... .......... .......... .......... 289 AAAAGGAGAG CTTAATCTAA CAAAGGGGTT CTTGTTTGTT TTTTGTTGTT TTTGAACAGT 51872 | .......... .......... .......... .......... .......... .........T 290 GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA 51932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA 350 TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 51992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 410 CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 52052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 470 CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT 52112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT 530 AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT ATTTTTATCT 52172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT ATTTTTTATC 590 TTGAA 52177 ||||| TTGAA 595 hqPGS_C08SLe0084H03.1+_SGN-E352248+ (50433 50580,51611 51751,51872 52177) ******************************************************************************** EST sequence 80 +strand 604 n (File: SGN-E352951+) 1 AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 61 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 121 GAGAAATGCC AGAGACTCAC ATGTTCCTAT TTTGGCACCA CTTCCTATTG GATTCGCAGT 181 GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC CCGCCAGGAG 241 TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACT GGATCTTCTG 301 GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA TTATCAGAGC 361 TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT CAAAGACTCA 421 ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT CCTTCAATGT 481 ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT AAATTATCAG 541 GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT ATTTTTATCT TTGAAAAAAA 601 AAAA Predicted gene structure (within gDNA segment 49833 to 52877): Exon 1 50433 50580 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 149 289 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52177 ( 306 n); cDNA 290 595 ( 306 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E352951+ 1.000 595 0.985 C PGS_C08SLe0084H03.1+_SGN-E352951+ (50433 50580,51611 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 50492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 60 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 50552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 120 GAGAAATGCC AGAGACTCAC ATGTTCCTGT AAGTGTTTTC CTCTTGTAGT TTTATTTCTT 50612 |||||||||| |||||||||| |||||||| GAGAAATGCC AGAGACTCAC ATGTTCCT.. .......... .......... .......... 148 CTTTGTGATA TCAAGTTTGC TTATCATGGA TATTTACATG TTAATTCTAA GCTAGAGTCT 50672 .......... .......... .......... .......... .......... .......... 148 AACCAGAAAT TTTGGAAGTA GTTTCTGAAA ATTTATCAAT GATATATGTG ACTTTACATT 50732 .......... .......... .......... .......... .......... .......... 148 ACATAGTTTG ACGATAAGTG AAGCGTGACA AGTAAAAATG ATCGTAGGGC CAACTTGTTA 50792 .......... .......... .......... .......... .......... .......... 148 CCCTACATTG TCTGATGAGA AGTGAAAAGT GACAAGTAAA AATGACCGTA GGGCCAACTT 50852 .......... .......... .......... .......... .......... .......... 148 GTTACCATAC ATAGTTTGAC GAGAAGTGAA AAGTGATTTT ATGACAAGTA AAAGTGAACG 50912 .......... .......... .......... .......... .......... .......... 148 GAGGGTATTA AACAACCAAC TTGCTATAAC ATGTTAAATT ACTCTAGTAG GGTAAAAGTT 50972 .......... .......... .......... .......... .......... .......... 148 CATTGTACTG TTTAATGTAT GTAAAAAGTT GAAATCTTGC AAGACAAGTG GGTCTTACTT 51032 .......... .......... .......... .......... .......... .......... 148 TTTGGTAAGT TAGGCAAAAA TATTGTTCAT GCTATAGCAT GTGGCATGTC TGGTTTTGTC 51092 .......... .......... .......... .......... .......... .......... 148 AGCAAGTCCT TTTAGTTGGT GTAGGGTTAT GTTGTGGGCC TAATTGAGTT AGGCTAAAGA 51152 .......... .......... .......... .......... .......... .......... 148 TAGTGATGTT CATGTGATAA GTTATTGTAA CTGTGGACTT TTTCTTGTCA TGGAGTGGCT 51212 .......... .......... .......... .......... .......... .......... 148 CGCCACGTCA CAGTGTTGTG GACCTTTAGG TCATCTCCGA TCCATAACAC CAACTTTTAT 51272 .......... .......... .......... .......... .......... .......... 148 ACTAAAAACG TGTATCAAAT GCGCTACACT GATTGTTCGA CATAATATTA TATAAAGAAT 51332 .......... .......... .......... .......... .......... .......... 148 GATTTGGTAT ATTAGGGAGT TTTCAAAAAC GTAGAATTTA TACGTTGAGT TAAGTTTCTT 51392 .......... .......... .......... .......... .......... .......... 148 TGTATTTTGT GGAGTGGAGA TGTAAATGAC ACCAAATTTC ATATTATTGT AGTGTCCGGA 51452 .......... .......... .......... .......... .......... .......... 148 TAATGGTGTG ATACTATTCA TCAACGCCTA TTTTATATAG AATGATCACA TAAGAACATT 51512 .......... .......... .......... .......... .......... .......... 148 GTTGGCCAGT CTTAGCTCAC CACAACTATC TTTTTGCGCT TATGTCTAAG AGAAATCCTT 51572 .......... .......... .......... .......... .......... .......... 148 GGAAGACATT TGTCTGATAA TCTTTATGTT TATTGTAGAT TTTGGCACCA CTTCCTATTG 51632 || |||||||||| |||||||||| .......... .......... .......... ........AT TTTGGCACCA CTTCCTATTG 170 GATTCGCAGT GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC 51692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCGCAGT GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC 230 CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACG 51752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCAC. 289 TAAGAAAAAC ATCTTTCATT CTTTTAAACT GACTCGAACA CCACAGTTAC TTGAACCAAA 51812 .......... .......... .......... .......... .......... .......... 289 AAAAGGAGAG CTTAATCTAA CAAAGGGGTT CTTGTTTGTT TTTTGTTGTT TTTGAACAGT 51872 | .......... .......... .......... .......... .......... .........T 290 GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA 51932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA 350 TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 51992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 410 CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 52052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 470 CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT 52112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT 530 AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT ATTTTTATCT 52172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT ATTTTTATCT 590 TTGAA 52177 ||||| TTGAA 595 hqPGS_C08SLe0084H03.1+_SGN-E352951+ (50433 50580,51611 51751,51872 52177) ******************************************************************************** EST sequence 91 +strand 568 n (File: SGN-E353392+) 1 AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 61 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 121 GAGAAATGCC AGAGACTCAC ATGTTCCTAT TTTGGCACCA CTTCCTATTG GATTCGCAGT 181 GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC CCGCCAGGAG 241 TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACT GGATCTTCTG 301 GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA TTATCAGAGC 361 TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT CAAAGACTCA 421 ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT CCTTCAATGT 481 ATTTGTAATG TGGATCTGTT CCTTCTNGTA AGATGTCTAT TATGTGTGTA AATTATCAGG 541 TTATGATAAT GGTATGTACC TTATCAAT Predicted gene structure (within gDNA segment 49833 to 52914): Exon 1 50433 50580 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 149 289 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52151 ( 280 n); cDNA 290 568 ( 279 n); score: 0.982 MATCH C08SLe0084H03.1+ SGN-E353392+ 0.991 569 1.002 C PGS_C08SLe0084H03.1+_SGN-E353392+ (50433 50580,51611 51751,51872 52151) Alignment (genomic DNA sequence = upper lines): AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 50492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTTGGT GGTGGTGCTA ATGTTGTTAA CCCTGGATAC ACCAAGGGTG ATGGCCTTGG 60 TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 50552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAAATT ATTGGCACCT TTGTCCTTGT TTACACTGTT TTTTCAGCCA CTGATGCCAA 120 GAGAAATGCC AGAGACTCAC ATGTTCCTGT AAGTGTTTTC CTCTTGTAGT TTTATTTCTT 50612 |||||||||| |||||||||| |||||||| GAGAAATGCC AGAGACTCAC ATGTTCCT.. .......... .......... .......... 148 CTTTGTGATA TCAAGTTTGC TTATCATGGA TATTTACATG TTAATTCTAA GCTAGAGTCT 50672 .......... .......... .......... .......... .......... .......... 148 AACCAGAAAT TTTGGAAGTA GTTTCTGAAA ATTTATCAAT GATATATGTG ACTTTACATT 50732 .......... .......... .......... .......... .......... .......... 148 ACATAGTTTG ACGATAAGTG AAGCGTGACA AGTAAAAATG ATCGTAGGGC CAACTTGTTA 50792 .......... .......... .......... .......... .......... .......... 148 CCCTACATTG TCTGATGAGA AGTGAAAAGT GACAAGTAAA AATGACCGTA GGGCCAACTT 50852 .......... .......... .......... .......... .......... .......... 148 GTTACCATAC ATAGTTTGAC GAGAAGTGAA AAGTGATTTT ATGACAAGTA AAAGTGAACG 50912 .......... .......... .......... .......... .......... .......... 148 GAGGGTATTA AACAACCAAC TTGCTATAAC ATGTTAAATT ACTCTAGTAG GGTAAAAGTT 50972 .......... .......... .......... .......... .......... .......... 148 CATTGTACTG TTTAATGTAT GTAAAAAGTT GAAATCTTGC AAGACAAGTG GGTCTTACTT 51032 .......... .......... .......... .......... .......... .......... 148 TTTGGTAAGT TAGGCAAAAA TATTGTTCAT GCTATAGCAT GTGGCATGTC TGGTTTTGTC 51092 .......... .......... .......... .......... .......... .......... 148 AGCAAGTCCT TTTAGTTGGT GTAGGGTTAT GTTGTGGGCC TAATTGAGTT AGGCTAAAGA 51152 .......... .......... .......... .......... .......... .......... 148 TAGTGATGTT CATGTGATAA GTTATTGTAA CTGTGGACTT TTTCTTGTCA TGGAGTGGCT 51212 .......... .......... .......... .......... .......... .......... 148 CGCCACGTCA CAGTGTTGTG GACCTTTAGG TCATCTCCGA TCCATAACAC CAACTTTTAT 51272 .......... .......... .......... .......... .......... .......... 148 ACTAAAAACG TGTATCAAAT GCGCTACACT GATTGTTCGA CATAATATTA TATAAAGAAT 51332 .......... .......... .......... .......... .......... .......... 148 GATTTGGTAT ATTAGGGAGT TTTCAAAAAC GTAGAATTTA TACGTTGAGT TAAGTTTCTT 51392 .......... .......... .......... .......... .......... .......... 148 TGTATTTTGT GGAGTGGAGA TGTAAATGAC ACCAAATTTC ATATTATTGT AGTGTCCGGA 51452 .......... .......... .......... .......... .......... .......... 148 TAATGGTGTG ATACTATTCA TCAACGCCTA TTTTATATAG AATGATCACA TAAGAACATT 51512 .......... .......... .......... .......... .......... .......... 148 GTTGGCCAGT CTTAGCTCAC CACAACTATC TTTTTGCGCT TATGTCTAAG AGAAATCCTT 51572 .......... .......... .......... .......... .......... .......... 148 GGAAGACATT TGTCTGATAA TCTTTATGTT TATTGTAGAT TTTGGCACCA CTTCCTATTG 51632 || |||||||||| |||||||||| .......... .......... .......... ........AT TTTGGCACCA CTTCCTATTG 170 GATTCGCAGT GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC 51692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCGCAGT GTTCTTGGTT CATTTGGCCA CCATCCCCAT CACCGGAACT GGCATCAACC 230 CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACG 51752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCAC. 289 TAAGAAAAAC ATCTTTCATT CTTTTAAACT GACTCGAACA CCACAGTTAC TTGAACCAAA 51812 .......... .......... .......... .......... .......... .......... 289 AAAAGGAGAG CTTAATCTAA CAAAGGGGTT CTTGTTTGTT TTTTGTTGTT TTTGAACAGT 51872 | .......... .......... .......... .......... .......... .........T 290 GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA 51932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA 350 TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 51992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 410 CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 52052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 470 CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT 52112 |||||||||| |||||||||| |||||||||| |||||| || ||||| |||| |||||||||| CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTNGTA AGATG-TCTA TTATGTGTGT 529 AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAAT 52151 |||||||||| |||||||||| || |||||| ||||||||| AAATTATCAG GTTATGATAA TGGTATGTAC CTTATCAAT 568 hqPGS_C08SLe0084H03.1+_SGN-E353392+ (50433 50580,51611 51751,51872 52151) ******************************************************************************** EST sequence 125 +strand 603 n (File: SGN-E344774+) 1 AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT 61 GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGATGCCAAG 121 AGAAATGCCA GAGACTCACA TGTTCCTATT TTGGCACCAC TTCCTATTGG ATTCGCAGTG 181 TTCTTGGTTC ATTTGGCCAC CATCCCCATC ACCGGAACTG GCATCAACCC CGCCAGGAGT 241 CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA ATGACCACTG GATCTTCTGG 301 GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC ACCAAATAAT TATCAGAGCT 361 ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA TGGGATTCTC AAAGACTCAA 421 CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT CAAGTTTCTC CTTCAATGTA 481 TTTGTAATGT GGATCTGTTC CTTCTGTTAA GATGTTCTAT TATGTGTGTA AATTATCAGG 541 TTATGATAAT GTAATGTACC TTATCAATGA AGGTTCTTTA TTTTTATCTT TGAAAAAAAA 601 AAA Predicted gene structure (within gDNA segment 49834 to 52877): Exon 1 50434 50580 ( 147 n); cDNA 1 147 ( 147 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 148 288 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52177 ( 306 n); cDNA 289 594 ( 306 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E344774+ 1.000 594 0.985 C PGS_C08SLe0084H03.1+_SGN-E344774+ (50434 50580,51611 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT 50493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTGGTG GTGGTGCTAA TGTTGTTAAC CCTGGATACA CCAAGGGTGA TGGCCTTGGT 60 GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGATGCCAAG 50553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAATTA TTGGCACCTT TGTCCTTGTT TACACTGTTT TTTCAGCCAC TGATGCCAAG 120 AGAAATGCCA GAGACTCACA TGTTCCTGTA AGTGTTTTCC TCTTGTAGTT TTATTTCTTC 50613 |||||||||| |||||||||| ||||||| AGAAATGCCA GAGACTCACA TGTTCCT... .......... .......... .......... 147 TTTGTGATAT CAAGTTTGCT TATCATGGAT ATTTACATGT TAATTCTAAG CTAGAGTCTA 50673 .......... .......... .......... .......... .......... .......... 147 ACCAGAAATT TTGGAAGTAG TTTCTGAAAA TTTATCAATG ATATATGTGA CTTTACATTA 50733 .......... .......... .......... .......... .......... .......... 147 CATAGTTTGA CGATAAGTGA AGCGTGACAA GTAAAAATGA TCGTAGGGCC AACTTGTTAC 50793 .......... .......... .......... .......... .......... .......... 147 CCTACATTGT CTGATGAGAA GTGAAAAGTG ACAAGTAAAA ATGACCGTAG GGCCAACTTG 50853 .......... .......... .......... .......... .......... .......... 147 TTACCATACA TAGTTTGACG AGAAGTGAAA AGTGATTTTA TGACAAGTAA AAGTGAACGG 50913 .......... .......... .......... .......... .......... .......... 147 AGGGTATTAA ACAACCAACT TGCTATAACA TGTTAAATTA CTCTAGTAGG GTAAAAGTTC 50973 .......... .......... .......... .......... .......... .......... 147 ATTGTACTGT TTAATGTATG TAAAAAGTTG AAATCTTGCA AGACAAGTGG GTCTTACTTT 51033 .......... .......... .......... .......... .......... .......... 147 TTGGTAAGTT AGGCAAAAAT ATTGTTCATG CTATAGCATG TGGCATGTCT GGTTTTGTCA 51093 .......... .......... .......... .......... .......... .......... 147 GCAAGTCCTT TTAGTTGGTG TAGGGTTATG TTGTGGGCCT AATTGAGTTA GGCTAAAGAT 51153 .......... .......... .......... .......... .......... .......... 147 AGTGATGTTC ATGTGATAAG TTATTGTAAC TGTGGACTTT TTCTTGTCAT GGAGTGGCTC 51213 .......... .......... .......... .......... .......... .......... 147 GCCACGTCAC AGTGTTGTGG ACCTTTAGGT CATCTCCGAT CCATAACACC AACTTTTATA 51273 .......... .......... .......... .......... .......... .......... 147 CTAAAAACGT GTATCAAATG CGCTACACTG ATTGTTCGAC ATAATATTAT ATAAAGAATG 51333 .......... .......... .......... .......... .......... .......... 147 ATTTGGTATA TTAGGGAGTT TTCAAAAACG TAGAATTTAT ACGTTGAGTT AAGTTTCTTT 51393 .......... .......... .......... .......... .......... .......... 147 GTATTTTGTG GAGTGGAGAT GTAAATGACA CCAAATTTCA TATTATTGTA GTGTCCGGAT 51453 .......... .......... .......... .......... .......... .......... 147 AATGGTGTGA TACTATTCAT CAACGCCTAT TTTATATAGA ATGATCACAT AAGAACATTG 51513 .......... .......... .......... .......... .......... .......... 147 TTGGCCAGTC TTAGCTCACC ACAACTATCT TTTTGCGCTT ATGTCTAAGA GAAATCCTTG 51573 .......... .......... .......... .......... .......... .......... 147 GAAGACATTT GTCTGATAAT CTTTATGTTT ATTGTAGATT TTGGCACCAC TTCCTATTGG 51633 ||| |||||||||| |||||||||| .......... .......... .......... .......ATT TTGGCACCAC TTCCTATTGG 170 ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC CATCCCCATC ACCGGAACTG GCATCAACCC 51693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCGCAGTG TTCTTGGTTC ATTTGGCCAC CATCCCCATC ACCGGAACTG GCATCAACCC 230 CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA ATGACCACGT 51753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA ATGACCAC.. 288 AAGAAAAACA TCTTTCATTC TTTTAAACTG ACTCGAACAC CACAGTTACT TGAACCAAAA 51813 .......... .......... .......... .......... .......... .......... 288 AAAGGAGAGC TTAATCTAAC AAAGGGGTTC TTGTTTGTTT TTTGTTGTTT TTGAACAGTG 51873 || .......... .......... .......... .......... .......... ........TG 290 GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC ACCAAATAAT 51933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC ACCAAATAAT 350 TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA TGGGATTCTC 51993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA TGGGATTCTC 410 AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT CAAGTTTCTC 52053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT CAAGTTTCTC 470 CTTCAATGTA TTTGTAATGT GGATCTGTTC CTTCTGTTAA GATGTTCTAT TATGTGTGTA 52113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAATGTA TTTGTAATGT GGATCTGTTC CTTCTGTTAA GATGTTCTAT TATGTGTGTA 530 AATTATCAGG TTATGATAAT GTAATGTACC TTATCAATGA AGGTTCTTTA TTTTTATCTT 52173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATCAGG TTATGATAAT GTAATGTACC TTATCAATGA AGGTTCTTTA TTTTTATCTT 590 TGAA 52177 |||| TGAA 594 hqPGS_C08SLe0084H03.1+_SGN-E344774+ (50434 50580,51611 51751,51872 52177) ******************************************************************************** EST sequence 241 -strand 593 n (File: SGN-E309074-) 1 ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC 61 TGAAATTATT GGCACCTTTG TCCTTGTTTA CCCTGTTTTT TCAGCCCCTG ATGCCAAGAG 121 AAATGCCAGA GACTCACATG TTCCTATTTT GGCACCACTT CCTATTGGAT TCGCAGTGTT 181 CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG CCAGGAGTCT 241 TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT GACCCCTGGA TCTTCTGGGT 301 TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCCC CCAATAATTA TCAGAGCTAT 361 GCCATTCCCC AGGTCTTAAG TTATCTGTCT TTAAACAATG GGATTCTCAA AGACTCAACA 421 GTGTACTTTT GTCTTCTTTT TTTGGGGGGT TGAATGTTCA AGTTTCTCCT TCAATGTATT 481 TGTAATGTGG ATCTGTTCCT TCTGTTAAGA TGTTCTATTA TGTGTGTAAA TTATCAGGTT 541 ATGATAATGT AATGTACCTT ATCCAAAAAA AAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 49826 to 53048): Exon 1 50436 50580 ( 145 n); cDNA 1 145 ( 145 n); score: 0.986 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 0.98), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 146 286 ( 141 n); score: 0.993 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 0.98), Pa: 0.991 (s: 1.00) Exon 3 51872 52145 ( 274 n); cDNA 287 560 ( 274 n); score: 0.989 Intron 3 52146 52247 ( 102 n); Pd: 0.000 (s: 1.00), Pa: 0.622 (s: 0) Exon 4 52248 52280 ( 33 n); cDNA 561 593 ( 33 n); score: 0.667 MATCH C08SLe0084H03.1+ SGN-E309074- 0.989 593 1.000 C PGS_C08SLe0084H03.1+_SGN-E309074- (50436 50580,51611 51751,51872 52145,52248 52280) Alignment (genomic DNA sequence = upper lines): ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC 50495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGGTGGT GGTGCTAATG TTGTTAACCC TGGATACACC AAGGGTGATG GCCTTGGTGC 60 TGAAATTATT GGCACCTTTG TCCTTGTTTA CACTGTTTTT TCAGCCACTG ATGCCAAGAG 50555 |||||||||| |||||||||| |||||||||| | |||||||| |||||| ||| |||||||||| TGAAATTATT GGCACCTTTG TCCTTGTTTA CCCTGTTTTT TCAGCCCCTG ATGCCAAGAG 120 AAATGCCAGA GACTCACATG TTCCTGTAAG TGTTTTCCTC TTGTAGTTTT ATTTCTTCTT 50615 |||||||||| |||||||||| ||||| AAATGCCAGA GACTCACATG TTCCT..... .......... .......... .......... 145 TGTGATATCA AGTTTGCTTA TCATGGATAT TTACATGTTA ATTCTAAGCT AGAGTCTAAC 50675 .......... .......... .......... .......... .......... .......... 145 CAGAAATTTT GGAAGTAGTT TCTGAAAATT TATCAATGAT ATATGTGACT TTACATTACA 50735 .......... .......... .......... .......... .......... .......... 145 TAGTTTGACG ATAAGTGAAG CGTGACAAGT AAAAATGATC GTAGGGCCAA CTTGTTACCC 50795 .......... .......... .......... .......... .......... .......... 145 TACATTGTCT GATGAGAAGT GAAAAGTGAC AAGTAAAAAT GACCGTAGGG CCAACTTGTT 50855 .......... .......... .......... .......... .......... .......... 145 ACCATACATA GTTTGACGAG AAGTGAAAAG TGATTTTATG ACAAGTAAAA GTGAACGGAG 50915 .......... .......... .......... .......... .......... .......... 145 GGTATTAAAC AACCAACTTG CTATAACATG TTAAATTACT CTAGTAGGGT AAAAGTTCAT 50975 .......... .......... .......... .......... .......... .......... 145 TGTACTGTTT AATGTATGTA AAAAGTTGAA ATCTTGCAAG ACAAGTGGGT CTTACTTTTT 51035 .......... .......... .......... .......... .......... .......... 145 GGTAAGTTAG GCAAAAATAT TGTTCATGCT ATAGCATGTG GCATGTCTGG TTTTGTCAGC 51095 .......... .......... .......... .......... .......... .......... 145 AAGTCCTTTT AGTTGGTGTA GGGTTATGTT GTGGGCCTAA TTGAGTTAGG CTAAAGATAG 51155 .......... .......... .......... .......... .......... .......... 145 TGATGTTCAT GTGATAAGTT ATTGTAACTG TGGACTTTTT CTTGTCATGG AGTGGCTCGC 51215 .......... .......... .......... .......... .......... .......... 145 CACGTCACAG TGTTGTGGAC CTTTAGGTCA TCTCCGATCC ATAACACCAA CTTTTATACT 51275 .......... .......... .......... .......... .......... .......... 145 AAAAACGTGT ATCAAATGCG CTACACTGAT TGTTCGACAT AATATTATAT AAAGAATGAT 51335 .......... .......... .......... .......... .......... .......... 145 TTGGTATATT AGGGAGTTTT CAAAAACGTA GAATTTATAC GTTGAGTTAA GTTTCTTTGT 51395 .......... .......... .......... .......... .......... .......... 145 ATTTTGTGGA GTGGAGATGT AAATGACACC AAATTTCATA TTATTGTAGT GTCCGGATAA 51455 .......... .......... .......... .......... .......... .......... 145 TGGTGTGATA CTATTCATCA ACGCCTATTT TATATAGAAT GATCACATAA GAACATTGTT 51515 .......... .......... .......... .......... .......... .......... 145 GGCCAGTCTT AGCTCACCAC AACTATCTTT TTGCGCTTAT GTCTAAGAGA AATCCTTGGA 51575 .......... .......... .......... .......... .......... .......... 145 AGACATTTGT CTGATAATCT TTATGTTTAT TGTAGATTTT GGCACCACTT CCTATTGGAT 51635 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATTTT GGCACCACTT CCTATTGGAT 170 TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG 51695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCAGTGTT CTTGGTTCAT TTGGCCACCA TCCCCATCAC CGGAACTGGC ATCAACCCCG 230 CCAGGAGTCT TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT GACCACGTAA 51755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| | CCAGGAGTCT TGGAGCTGCT ATCATCTACA ACGACGAGCA TGCATGGAAT GACCCC.... 286 GAAAAACATC TTTCATTCTT TTAAACTGAC TCGAACACCA CAGTTACTTG AACCAAAAAA 51815 .......... .......... .......... .......... .......... .......... 286 AGGAGAGCTT AATCTAACAA AGGGGTTCTT GTTTGTTTTT TGTTGTTTTT GAACAGTGGA 51875 |||| .......... .......... .......... .......... .......... ......TGGA 290 TCTTCTGGGT TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCAC CAAATAATTA 51935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | | |||||||| TCTTCTGGGT TGGACCAATG ATTGGAGCTG CTCTTGCTGC TATTTACCCC CCAATAATTA 350 TCAGAGCTAT GCCATTCCAC AGGTCTTAAG TTATCTGTCT TTAAACAATG GGATTCTCAA 51995 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TCAGAGCTAT GCCATTCCCC AGGTCTTAAG TTATCTGTCT TTAAACAATG GGATTCTCAA 410 AGACTCAACA GTGTACTTTT GTCTTCTTTT TTTGGGGGGT TGAATGTTCA AGTTTCTCCT 52055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTCAACA GTGTACTTTT GTCTTCTTTT TTTGGGGGGT TGAATGTTCA AGTTTCTCCT 470 TCAATGTATT TGTAATGTGG ATCTGTTCCT TCTGTTAAGA TGTTCTATTA TGTGTGTAAA 52115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATGTATT TGTAATGTGG ATCTGTTCCT TCTGTTAAGA TGTTCTATTA TGTGTGTAAA 530 TTATCAGGTT ATGATAATGT AATGTACCTT ATCAATGAAG GTTCTTTATT TTTATCTTTG 52175 |||||||||| |||||||||| |||||||||| TTATCAGGTT ATGATAATGT AATGTACCTT .......... .......... .......... 560 AACCGCGTCT CAATTTGTTT TTCTAGTTTT GACTTGATAC GGAGTTGAGA AACAAACTGA 52235 .......... .......... .......... .......... .......... .......... 560 TTGTACTTTT AGAGACGGAC TAGAAAGAAA AAAAAGACAA ACAAA 52280 | | | | ||| ||| ||||| | || | ||| .......... ..ATCCAAAA AAAAAAAAAA AAAAAAAAAA AAAAA 593 hqPGS_C08SLe0084H03.1+_SGN-E309074- (50436 50580,51611 51751,51872 52145,52248 52280) ******************************************************************************** EST sequence 98 +strand 563 n (File: SGN-E354591+) 1 TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT TGTTTACACT 61 GTTTTTTCAG CCACTGATGC CAAGAGAAAT GCCAGAGACT CACATGTTCC TATTTTGGCA 121 CCACTTCCTA TTGGATTCGC AGTGTTCTTG GTTCATTTGG CCACCATCCC CATCACCGGA 181 ACTGGCATCA ACCCCGCCAG GAGTCTTGGA GCTGCTATCA TCTACAACGA CGAGCATGCA 241 TGGAATGACC ACTGGATCTT CTGGGTTGGA CCAATGATTG GAGCTGCTCT TGCTGCTATT 301 TACCACCAAA TAATTATCAG AGCTATGCCA TTCCACAGGT CTTAAGTTAT CTGTCTTTAA 361 ACAATGGGAT TCTCAAAGAC TCAACAGTGT ACTTTTGTCT TCTTTTTTTG GGGGGTTGAA 421 TGTTCAAGTT TCTCCTTCAA TGTATTTGTA ATGTGGATCT GTTCCTTCTG TTAAGATGTT 481 CTATTATGTG TGTAAATTAT CAGGTTATGA TAATGTAATG TACCTTATCA ATGAAGGTTC 541 TTTATTTTTA TCTTTGGAAA AAA Predicted gene structure (within gDNA segment 49870 to 52855): Exon 1 50470 50580 ( 111 n); cDNA 1 111 ( 111 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 112 252 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52175 ( 304 n); cDNA 253 556 ( 304 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E354591+ 1.000 556 0.988 C PGS_C08SLe0084H03.1+_SGN-E354591+ (50470 50580,51611 51751,51872 52175) Alignment (genomic DNA sequence = upper lines): TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT TGTTTACACT 50529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACCAAGG GTGATGGCCT TGGTGCTGAA ATTATTGGCA CCTTTGTCCT TGTTTACACT 60 GTTTTTTCAG CCACTGATGC CAAGAGAAAT GCCAGAGACT CACATGTTCC TGTAAGTGTT 50589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTTTTTTCAG CCACTGATGC CAAGAGAAAT GCCAGAGACT CACATGTTCC T......... 111 TTCCTCTTGT AGTTTTATTT CTTCTTTGTG ATATCAAGTT TGCTTATCAT GGATATTTAC 50649 .......... .......... .......... .......... .......... .......... 111 ATGTTAATTC TAAGCTAGAG TCTAACCAGA AATTTTGGAA GTAGTTTCTG AAAATTTATC 50709 .......... .......... .......... .......... .......... .......... 111 AATGATATAT GTGACTTTAC ATTACATAGT TTGACGATAA GTGAAGCGTG ACAAGTAAAA 50769 .......... .......... .......... .......... .......... .......... 111 ATGATCGTAG GGCCAACTTG TTACCCTACA TTGTCTGATG AGAAGTGAAA AGTGACAAGT 50829 .......... .......... .......... .......... .......... .......... 111 AAAAATGACC GTAGGGCCAA CTTGTTACCA TACATAGTTT GACGAGAAGT GAAAAGTGAT 50889 .......... .......... .......... .......... .......... .......... 111 TTTATGACAA GTAAAAGTGA ACGGAGGGTA TTAAACAACC AACTTGCTAT AACATGTTAA 50949 .......... .......... .......... .......... .......... .......... 111 ATTACTCTAG TAGGGTAAAA GTTCATTGTA CTGTTTAATG TATGTAAAAA GTTGAAATCT 51009 .......... .......... .......... .......... .......... .......... 111 TGCAAGACAA GTGGGTCTTA CTTTTTGGTA AGTTAGGCAA AAATATTGTT CATGCTATAG 51069 .......... .......... .......... .......... .......... .......... 111 CATGTGGCAT GTCTGGTTTT GTCAGCAAGT CCTTTTAGTT GGTGTAGGGT TATGTTGTGG 51129 .......... .......... .......... .......... .......... .......... 111 GCCTAATTGA GTTAGGCTAA AGATAGTGAT GTTCATGTGA TAAGTTATTG TAACTGTGGA 51189 .......... .......... .......... .......... .......... .......... 111 CTTTTTCTTG TCATGGAGTG GCTCGCCACG TCACAGTGTT GTGGACCTTT AGGTCATCTC 51249 .......... .......... .......... .......... .......... .......... 111 CGATCCATAA CACCAACTTT TATACTAAAA ACGTGTATCA AATGCGCTAC ACTGATTGTT 51309 .......... .......... .......... .......... .......... .......... 111 CGACATAATA TTATATAAAG AATGATTTGG TATATTAGGG AGTTTTCAAA AACGTAGAAT 51369 .......... .......... .......... .......... .......... .......... 111 TTATACGTTG AGTTAAGTTT CTTTGTATTT TGTGGAGTGG AGATGTAAAT GACACCAAAT 51429 .......... .......... .......... .......... .......... .......... 111 TTCATATTAT TGTAGTGTCC GGATAATGGT GTGATACTAT TCATCAACGC CTATTTTATA 51489 .......... .......... .......... .......... .......... .......... 111 TAGAATGATC ACATAAGAAC ATTGTTGGCC AGTCTTAGCT CACCACAACT ATCTTTTTGC 51549 .......... .......... .......... .......... .......... .......... 111 GCTTATGTCT AAGAGAAATC CTTGGAAGAC ATTTGTCTGA TAATCTTTAT GTTTATTGTA 51609 .......... .......... .......... .......... .......... .......... 111 GATTTTGGCA CCACTTCCTA TTGGATTCGC AGTGTTCTTG GTTCATTTGG CCACCATCCC 51669 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .ATTTTGGCA CCACTTCCTA TTGGATTCGC AGTGTTCTTG GTTCATTTGG CCACCATCCC 170 CATCACCGGA ACTGGCATCA ACCCCGCCAG GAGTCTTGGA GCTGCTATCA TCTACAACGA 51729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCACCGGA ACTGGCATCA ACCCCGCCAG GAGTCTTGGA GCTGCTATCA TCTACAACGA 230 CGAGCATGCA TGGAATGACC ACGTAAGAAA AACATCTTTC ATTCTTTTAA ACTGACTCGA 51789 |||||||||| |||||||||| || CGAGCATGCA TGGAATGACC AC........ .......... .......... .......... 252 ACACCACAGT TACTTGAACC AAAAAAAGGA GAGCTTAATC TAACAAAGGG GTTCTTGTTT 51849 .......... .......... .......... .......... .......... .......... 252 GTTTTTTGTT GTTTTTGAAC AGTGGATCTT CTGGGTTGGA CCAATGATTG GAGCTGCTCT 51909 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TGGATCTT CTGGGTTGGA CCAATGATTG GAGCTGCTCT 290 TGCTGCTATT TACCACCAAA TAATTATCAG AGCTATGCCA TTCCACAGGT CTTAAGTTAT 51969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGCTATT TACCACCAAA TAATTATCAG AGCTATGCCA TTCCACAGGT CTTAAGTTAT 350 CTGTCTTTAA ACAATGGGAT TCTCAAAGAC TCAACAGTGT ACTTTTGTCT TCTTTTTTTG 52029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTTTAA ACAATGGGAT TCTCAAAGAC TCAACAGTGT ACTTTTGTCT TCTTTTTTTG 410 GGGGGTTGAA TGTTCAAGTT TCTCCTTCAA TGTATTTGTA ATGTGGATCT GTTCCTTCTG 52089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGGTTGAA TGTTCAAGTT TCTCCTTCAA TGTATTTGTA ATGTGGATCT GTTCCTTCTG 470 TTAAGATGTT CTATTATGTG TGTAAATTAT CAGGTTATGA TAATGTAATG TACCTTATCA 52149 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGATGTT CTATTATGTG TGTAAATTAT CAGGTTATGA TAATGTAATG TACCTTATCA 530 ATGAAGGTTC TTTATTTTTA TCTTTG 52175 |||||||||| |||||||||| |||||| ATGAAGGTTC TTTATTTTTA TCTTTG 556 hqPGS_C08SLe0084H03.1+_SGN-E354591+ (50470 50580,51611 51751,51872 52175) ******************************************************************************** EST sequence 7 +strand 527 n (File: SGN-E304927+) 1 AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA 61 ATGCCAGAGA CTCACATGTT CCTATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT 121 TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC AGGAGTCTTG 181 GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA CCACTGGATC TTCTGGGTTG 241 GACCAATGAT TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC AGAGCTATGC 301 CATTCCACAG GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCTCAAAG ACTCAACAGT 361 GTACTTTTGT CTTCTTTTTT TGGGGGGTTG AATGTTCAAG TTTCTCCTTC AATGTATTTG 421 TAATGTGGAT CTGTTCCTTC TGTTAAGATG TTCTATTATG TGTGTAAATT ATCAGGTTAT 481 GATAATGTAA TGTACCTTAT CAATGAAGGT TCTTTATTTT TATCTTT Predicted gene structure (within gDNA segment 49898 to 52784): Exon 1 50498 50580 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 50581 51610 (1030 n); Pd: 1.000 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 51611 51751 ( 141 n); cDNA 84 224 ( 141 n); score: 1.000 Intron 2 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 51872 52174 ( 303 n); cDNA 225 527 ( 303 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E304927+ 1.000 527 1.000 C PGS_C08SLe0084H03.1+_SGN-E304927+ (50498 50580,51611 51751,51872 52174) Alignment (genomic DNA sequence = upper lines): AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA 50557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTATTGG CACCTTTGTC CTTGTTTACA CTGTTTTTTC AGCCACTGAT GCCAAGAGAA 60 ATGCCAGAGA CTCACATGTT CCTGTAAGTG TTTTCCTCTT GTAGTTTTAT TTCTTCTTTG 50617 |||||||||| |||||||||| ||| ATGCCAGAGA CTCACATGTT CCT....... .......... .......... .......... 83 TGATATCAAG TTTGCTTATC ATGGATATTT ACATGTTAAT TCTAAGCTAG AGTCTAACCA 50677 .......... .......... .......... .......... .......... .......... 83 GAAATTTTGG AAGTAGTTTC TGAAAATTTA TCAATGATAT ATGTGACTTT ACATTACATA 50737 .......... .......... .......... .......... .......... .......... 83 GTTTGACGAT AAGTGAAGCG TGACAAGTAA AAATGATCGT AGGGCCAACT TGTTACCCTA 50797 .......... .......... .......... .......... .......... .......... 83 CATTGTCTGA TGAGAAGTGA AAAGTGACAA GTAAAAATGA CCGTAGGGCC AACTTGTTAC 50857 .......... .......... .......... .......... .......... .......... 83 CATACATAGT TTGACGAGAA GTGAAAAGTG ATTTTATGAC AAGTAAAAGT GAACGGAGGG 50917 .......... .......... .......... .......... .......... .......... 83 TATTAAACAA CCAACTTGCT ATAACATGTT AAATTACTCT AGTAGGGTAA AAGTTCATTG 50977 .......... .......... .......... .......... .......... .......... 83 TACTGTTTAA TGTATGTAAA AAGTTGAAAT CTTGCAAGAC AAGTGGGTCT TACTTTTTGG 51037 .......... .......... .......... .......... .......... .......... 83 TAAGTTAGGC AAAAATATTG TTCATGCTAT AGCATGTGGC ATGTCTGGTT TTGTCAGCAA 51097 .......... .......... .......... .......... .......... .......... 83 GTCCTTTTAG TTGGTGTAGG GTTATGTTGT GGGCCTAATT GAGTTAGGCT AAAGATAGTG 51157 .......... .......... .......... .......... .......... .......... 83 ATGTTCATGT GATAAGTTAT TGTAACTGTG GACTTTTTCT TGTCATGGAG TGGCTCGCCA 51217 .......... .......... .......... .......... .......... .......... 83 CGTCACAGTG TTGTGGACCT TTAGGTCATC TCCGATCCAT AACACCAACT TTTATACTAA 51277 .......... .......... .......... .......... .......... .......... 83 AAACGTGTAT CAAATGCGCT ACACTGATTG TTCGACATAA TATTATATAA AGAATGATTT 51337 .......... .......... .......... .......... .......... .......... 83 GGTATATTAG GGAGTTTTCA AAAACGTAGA ATTTATACGT TGAGTTAAGT TTCTTTGTAT 51397 .......... .......... .......... .......... .......... .......... 83 TTTGTGGAGT GGAGATGTAA ATGACACCAA ATTTCATATT ATTGTAGTGT CCGGATAATG 51457 .......... .......... .......... .......... .......... .......... 83 GTGTGATACT ATTCATCAAC GCCTATTTTA TATAGAATGA TCACATAAGA ACATTGTTGG 51517 .......... .......... .......... .......... .......... .......... 83 CCAGTCTTAG CTCACCACAA CTATCTTTTT GCGCTTATGT CTAAGAGAAA TCCTTGGAAG 51577 .......... .......... .......... .......... .......... .......... 83 ACATTTGTCT GATAATCTTT ATGTTTATTG TAGATTTTGG CACCACTTCC TATTGGATTC 51637 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATTTTGG CACCACTTCC TATTGGATTC 110 GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC 51697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTGTTCT TGGTTCATTT GGCCACCATC CCCATCACCG GAACTGGCAT CAACCCCGCC 170 AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA CCACGTAAGA 51757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AGGAGTCTTG GAGCTGCTAT CATCTACAAC GACGAGCATG CATGGAATGA CCAC...... 224 AAAACATCTT TCATTCTTTT AAACTGACTC GAACACCACA GTTACTTGAA CCAAAAAAAG 51817 .......... .......... .......... .......... .......... .......... 224 GAGAGCTTAA TCTAACAAAG GGGTTCTTGT TTGTTTTTTG TTGTTTTTGA ACAGTGGATC 51877 |||||| .......... .......... .......... .......... .......... ....TGGATC 230 TTCTGGGTTG GACCAATGAT TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC 51937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGGTTG GACCAATGAT TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC 290 AGAGCTATGC CATTCCACAG GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCTCAAAG 51997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCTATGC CATTCCACAG GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCTCAAAG 350 ACTCAACAGT GTACTTTTGT CTTCTTTTTT TGGGGGGTTG AATGTTCAAG TTTCTCCTTC 52057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCAACAGT GTACTTTTGT CTTCTTTTTT TGGGGGGTTG AATGTTCAAG TTTCTCCTTC 410 AATGTATTTG TAATGTGGAT CTGTTCCTTC TGTTAAGATG TTCTATTATG TGTGTAAATT 52117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTATTTG TAATGTGGAT CTGTTCCTTC TGTTAAGATG TTCTATTATG TGTGTAAATT 470 ATCAGGTTAT GATAATGTAA TGTACCTTAT CAATGAAGGT TCTTTATTTT TATCTTT 52174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATCAGGTTAT GATAATGTAA TGTACCTTAT CAATGAAGGT TCTTTATTTT TATCTTT 527 hqPGS_C08SLe0084H03.1+_SGN-E304927+ (50498 50580,51611 51751,51872 52174) ******************************************************************************** EST sequence 157 -strand 472 n (File: SGN-E225153-) 1 ATGTTCCTAT TTTGGCACCA CTTCCTATTG GATTCGCAGT GTTCTTGGTT CATTTGGCCA 61 CCATCCCCAT CACCGGAACT GGCATCAACC CCGCCAGGAG TCTTGGAGCT GCTATCATCT 121 ACAACGACGA GCATGCATGG AATGACCACT GGATCTTCTG GGTTGGACCA ATGATTGGAG 181 CTGCTCTTGC TGCTATTTAC CCCCAAATAA TTATCAGAGC TATGCCATTC CACAGGTCTT 241 AAGTTATCTG TCTTTAAACA ATGGGATTCT CAAAGACTCA ACAGTGTACT TTTGTCTTCT 301 TTTTTTGGGG GGTTGAATGT TCAAGTTTCT CCTTCAATGT ATTTGTAATG TGGATCTGTT 361 CCTTCTGTTA AGATGTTCTA TTATGTGTGT AAATTATCAG GTTATGATAA TGTAATGTAC 421 CTTATCAATG AAGGTTCTTT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 50921 to 53073): Exon 1 51611 51751 ( 141 n); cDNA 9 149 ( 141 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 2 51872 52162 ( 291 n); cDNA 150 440 ( 291 n); score: 0.997 Intron 2 52163 52247 ( 85 n); Pd: 0.000 (s: 1.00), Pa: 0.622 (s: 0) Exon 3 52248 52279 ( 32 n); cDNA 441 472 ( 32 n); score: 0.656 MATCH C08SLe0084H03.1+ SGN-E225153- 0.998 464 0.983 C PGS_C08SLe0084H03.1+_SGN-E225153- (51611 51751,51872 52162,52248 52279) Alignment (genomic DNA sequence = upper lines): ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC 51670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC 68 ATCACCGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC 51730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACCGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC 128 GAGCATGCAT GGAATGACCA CGTAAGAAAA ACATCTTTCA TTCTTTTAAA CTGACTCGAA 51790 |||||||||| |||||||||| | GAGCATGCAT GGAATGACCA C......... .......... .......... .......... 149 CACCACAGTT ACTTGAACCA AAAAAAGGAG AGCTTAATCT AACAAAGGGG TTCTTGTTTG 51850 .......... .......... .......... .......... .......... .......... 149 TTTTTTGTTG TTTTTGAACA GTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT 51910 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT 188 GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC 51970 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTATTT ACCCCCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC 248 TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG 52030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG 308 GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT 52090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT 368 TAAGATGTTC TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA 52150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGATGTTC TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA 428 TGAAGGTTCT TTATTTTTAT CTTTGAACCG CGTCTCAATT TGTTTTTCTA GTTTTGACTT 52210 |||||||||| || TGAAGGTTCT TT........ .......... .......... .......... .......... 440 GATACGGAGT TGAGAAACAA ACTGATTGTA CTTTTAGAGA CGGACTAGAA AGAAAAAAAA 52270 | | | | || | |||||||| .......... .......... .......... .......AAA AAAAAAAAAA AAAAAAAAAA 463 GACAAACAA 52279 | ||| || AAAAAAAAA 472 hqPGS_C08SLe0084H03.1+_SGN-E225153- (51611 51751,51872 52162,52248 52279) ******************************************************************************** EST sequence 190 -strand 422 n (File: SGN-E220946-) 1 CTCACATGTT CCTATTTTGG CACCACTTCC TATTGGATTC GCAGTGTTCT TGGTTCATTT 61 GGCCACCATC CCCATCACAG GAACTGGCAT CAACCCCGCC AGGAGTCTTG GAGCTGCTAT 121 CATCTACAAC GACGAGCATG CATGGAATGA CCACTGGATC TTTTGGGTTG GACCAATGAT 181 TGGAGCTGCT CTTGCTGCTA TTTACCACCA AATAATTATC AGAGCTATGC CATTCCACAG 241 GTCTTAAGTT ATCTGTCTTT AAACAATGGG ATTCTCAAAG ACTCAACAGT GTACTTTTGT 301 CTTCTTTTTT TGGGGGGTTG AATGTTCAAG TTTCTCCTTC AATGTATTTG TAATGTGGAT 361 CTGTTCCTTC TGTTAAGATG TTCTATTATG TGTGTAAAAA AAAAAAAAAA AAAAAAAAAA 421 AA Predicted gene structure (within gDNA segment 50871 to 52955): Exon 1 51611 51751 ( 141 n); cDNA 14 154 ( 141 n); score: 0.993 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 0.98) Exon 2 51872 52114 ( 243 n); cDNA 155 397 ( 243 n); score: 0.996 Intron 2 52115 52247 ( 133 n); Pd: 0.000 (s: 1.00), Pa: 0.622 (s: 0) Exon 3 52248 52270 ( 23 n); cDNA 398 420 ( 23 n); score: 0.652 MATCH C08SLe0084H03.1+ SGN-E220946- 0.995 407 0.964 C PGS_C08SLe0084H03.1+_SGN-E220946- (51611 51751,51872 52114,52248 52270) Alignment (genomic DNA sequence = upper lines): ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC 51670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGGCAC CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC 73 ATCACCGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC 51730 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAGGAA CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC 133 GAGCATGCAT GGAATGACCA CGTAAGAAAA ACATCTTTCA TTCTTTTAAA CTGACTCGAA 51790 |||||||||| |||||||||| | GAGCATGCAT GGAATGACCA C......... .......... .......... .......... 154 CACCACAGTT ACTTGAACCA AAAAAAGGAG AGCTTAATCT AACAAAGGGG TTCTTGTTTG 51850 .......... .......... .......... .......... .......... .......... 154 TTTTTTGTTG TTTTTGAACA GTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT 51910 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TGGATCTTT TGGGTTGGAC CAATGATTGG AGCTGCTCTT 193 GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC 51970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTATTT ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC 253 TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG 52030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTTAAA CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG 313 GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT 52090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTGAAT GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT 373 TAAGATGTTC TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA 52150 |||||||||| |||||||||| |||| TAAGATGTTC TATTATGTGT GTAA...... .......... .......... .......... 397 TGAAGGTTCT TTATTTTTAT CTTTGAACCG CGTCTCAATT TGTTTTTCTA GTTTTGACTT 52210 .......... .......... .......... .......... .......... .......... 397 GATACGGAGT TGAGAAACAA ACTGATTGTA CTTTTAGAGA CGGACTAGAA AGAAAAAAAA 52270 | | | | || | |||||||| .......... .......... .......... .......AAA AAAAAAAAAA AAAAAAAAAA 420 hqPGS_C08SLe0084H03.1+_SGN-E220946- (51611 51751,51872 52114,52248 52270) ******************************************************************************** EST sequence 49 +strand 451 n (File: SGN-E231555+) 1 CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA 61 CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT 121 GGAATGACCA CTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 181 ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 241 CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAA 301 TGTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 361 TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 421 TTATTTTTAA AAAAAAAAAA AAGAAAAAAA A Predicted gene structure (within gDNA segment 51021 to 52999): Exon 1 51621 51751 ( 131 n); cDNA 1 131 ( 131 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 2 51872 52168 ( 297 n); cDNA 132 428 ( 297 n); score: 0.990 Intron 2 52169 52247 ( 79 n); Pd: 0.000 (s: 1.00), Pa: 0.622 (s: 0) Exon 3 52248 52270 ( 23 n); cDNA 429 451 ( 23 n); score: 0.696 MATCH C08SLe0084H03.1+ SGN-E231555+ 0.993 451 1.000 C PGS_C08SLe0084H03.1+_SGN-E231555+ (51621 51751,51872 52168,52248 52270) Alignment (genomic DNA sequence = upper lines): CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA 51680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA 60 CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT 51740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT 120 GGAATGACCA CGTAAGAAAA ACATCTTTCA TTCTTTTAAA CTGACTCGAA CACCACAGTT 51800 |||||||||| | GGAATGACCA C......... .......... .......... .......... .......... 131 ACTTGAACCA AAAAAAGGAG AGCTTAATCT AACAAAGGGG TTCTTGTTTG TTTTTTGTTG 51860 .......... .......... .......... .......... .......... .......... 131 TTTTTGAACA GTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 51920 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 180 ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 51980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 240 CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT 52040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAA 300 GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 52100 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 360 TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 52160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 420 TTATTTTTAT CTTTGAACCG CGTCTCAATT TGTTTTTCTA GTTTTGACTT GATACGGAGT 52220 |||||||| TTATTTTT.. .......... .......... .......... .......... .......... 428 TGAGAAACAA ACTGATTGTA CTTTTAGAGA CGGACTAGAA AGAAAAAAAA 52270 | | | | || |||||||||| .......... .......... .......AAA AAAAAAAAAA AGAAAAAAAA 451 hqPGS_C08SLe0084H03.1+_SGN-E231555+ (51621 51751,51872 52168,52248 52270) ******************************************************************************** EST sequence 89 +strand 496 n (File: SGN-E376694+) 1 CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA 61 CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT 121 GGAATGACCA CTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 181 ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 241 CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT 301 GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 361 TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 421 TTATTTTTAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 481 AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 51021 to 53449): Exon 1 51621 51751 ( 131 n); cDNA 1 131 ( 131 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 2 51872 52168 ( 297 n); cDNA 132 428 ( 297 n); score: 1.000 PPA cDNA 446 496 MATCH C08SLe0084H03.1+ SGN-E376694+ 1.000 428 0.863 C PGS_C08SLe0084H03.1+_SGN-E376694+ (51621 51751,51872 52168) Alignment (genomic DNA sequence = upper lines): CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA 51680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCCTAT TGGATTCGCA GTGTTCTTGG TTCATTTGGC CACCATCCCC ATCACCGGAA 60 CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT 51740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCATCAA CCCCGCCAGG AGTCTTGGAG CTGCTATCAT CTACAACGAC GAGCATGCAT 120 GGAATGACCA CGTAAGAAAA ACATCTTTCA TTCTTTTAAA CTGACTCGAA CACCACAGTT 51800 |||||||||| | GGAATGACCA C......... .......... .......... .......... .......... 131 ACTTGAACCA AAAAAAGGAG AGCTTAATCT AACAAAGGGG TTCTTGTTTG TTTTTTGTTG 51860 .......... .......... .......... .......... .......... .......... 131 TTTTTGAACA GTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 51920 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 180 ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 51980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 240 CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT 52040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT 300 GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 52100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 360 TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 52160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 420 TTATTTTT 52168 |||||||| TTATTTTT 428 hqPGS_C08SLe0084H03.1+_SGN-E376694+ (51621 51751,51872 52168) ******************************************************************************** EST sequence 4 +strand 471 n (File: SGN-E211992+) 1 ACTTCCTATT GGATTCGCAG TGTTCTTGGT TCATTTGGCC ACCATCCCCA TCACCGGAAC 61 TGGCATCAAC CCCGCCAGGA GTCTTGGAGC TGCTATCATC TACAACGACG AGCATGCATG 121 GAATGACCAC TGGATCTTCT GGGTTGGACC AATGATTGGA GCTGCTCTTG CTGCTATTTA 181 CCACCAAATA ATTATCAGAG CTATGCCATT CCACAGGTCT TAAGTTATCT GTCTTTAAAC 241 AATGGGATTC TCAAAGACTC AACAGTGTAC TTTTGTCTTC TTTTTTTGGG GGGTTGAATG 301 TTCAAGTTTC TCCTTCAATG TATTTGTAAT GTGGATCTGT TCCTTCTGTT AAGATGTTCT 361 ATTATGTGTG TAAATTATCA GGGTATGATA ATGTAATGTA CCTTATCAAT GAAGGTTCTT 421 TATTTTTATC TTTGAACCGC GTCTCCATTT GTTTTTCTAG NTTTGACTTG A Predicted gene structure (within gDNA segment 51022 to 53056): Exon 1 51622 51751 ( 130 n); cDNA 1 130 ( 130 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 2 51872 52212 ( 341 n); cDNA 131 471 ( 341 n); score: 0.991 MATCH C08SLe0084H03.1+ SGN-E211992+ 0.994 471 1.000 C PGS_C08SLe0084H03.1+_SGN-E211992+ (51622 51751,51872 52212) Alignment (genomic DNA sequence = upper lines): ACTTCCTATT GGATTCGCAG TGTTCTTGGT TCATTTGGCC ACCATCCCCA TCACCGGAAC 51681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCCTATT GGATTCGCAG TGTTCTTGGT TCATTTGGCC ACCATCCCCA TCACCGGAAC 60 TGGCATCAAC CCCGCCAGGA GTCTTGGAGC TGCTATCATC TACAACGACG AGCATGCATG 51741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCATCAAC CCCGCCAGGA GTCTTGGAGC TGCTATCATC TACAACGACG AGCATGCATG 120 GAATGACCAC GTAAGAAAAA CATCTTTCAT TCTTTTAAAC TGACTCGAAC ACCACAGTTA 51801 |||||||||| GAATGACCAC .......... .......... .......... .......... .......... 130 CTTGAACCAA AAAAAGGAGA GCTTAATCTA ACAAAGGGGT TCTTGTTTGT TTTTTGTTGT 51861 .......... .......... .......... .......... .......... .......... 130 TTTTGAACAG TGGATCTTCT GGGTTGGACC AATGATTGGA GCTGCTCTTG CTGCTATTTA 51921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TGGATCTTCT GGGTTGGACC AATGATTGGA GCTGCTCTTG CTGCTATTTA 180 CCACCAAATA ATTATCAGAG CTATGCCATT CCACAGGTCT TAAGTTATCT GTCTTTAAAC 51981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCAAATA ATTATCAGAG CTATGCCATT CCACAGGTCT TAAGTTATCT GTCTTTAAAC 240 AATGGGATTC TCAAAGACTC AACAGTGTAC TTTTGTCTTC TTTTTTTGGG GGGTTGAATG 52041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGGATTC TCAAAGACTC AACAGTGTAC TTTTGTCTTC TTTTTTTGGG GGGTTGAATG 300 TTCAAGTTTC TCCTTCAATG TATTTGTAAT GTGGATCTGT TCCTTCTGTT AAGATGTTCT 52101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGTTTC TCCTTCAATG TATTTGTAAT GTGGATCTGT TCCTTCTGTT AAGATGTTCT 360 ATTATGTGTG TAAATTATCA GGTTATGATA ATGTAATGTA CCTTATCAAT GAAGGTTCTT 52161 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ATTATGTGTG TAAATTATCA GGGTATGATA ATGTAATGTA CCTTATCAAT GAAGGTTCTT 420 TATTTTTATC TTTGAACCGC GTCTCAATTT GTTTTTCTAG TTTTGACTTG A 52212 |||||||||| |||||||||| ||||| |||| |||||||||| ||||||||| | TATTTTTATC TTTGAACCGC GTCTCCATTT GTTTTTCTAG NTTTGACTTG A 471 hqPGS_C08SLe0084H03.1+_SGN-E211992+ (51622 51751,51872 52212) ******************************************************************************** EST sequence 69 +strand 415 n (File: SGN-E307229+) 1 TTGGTTCATT TGGCCACCAT CCCCATCACC GGAACTGGCA TCAACCCCGC CAGGAGTCTT 61 GGAGCTGCTA TCATCTACAA CGACGAGCAT GCATGGAATG ACCACTGGAT CTTCTGGGTT 121 GGACCAATGA TTGGAGCTGC TCTTGCTGCT ATTTACCACC AAATAATTAT CAGAGCTATG 181 CCATTCCACA GGTCTTAAGT TATCTGTCTT TAAACAATGG GATTCTCAAA GACTCAACAG 241 TGTACTTTTG TCTTCTTTTT TTGGGGGGTT GAATGTTCAA GTTTCTCCTT CAATGTATTT 301 GTAATGTGGA TCTGTTCCTT CTGTTAAGAT GTTCTATTAT GTGTGTAAAT TATCAGGTTA 361 TGATAATGTA ATGTACCTTA TCAATGAAGG TTCTTTATTT TTAAAAAAAA AAAAT Predicted gene structure (within gDNA segment 51047 to 52899): Exon 1 51647 51751 ( 105 n); cDNA 1 105 ( 105 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 2 51872 52168 ( 297 n); cDNA 106 402 ( 297 n); score: 1.000 PPA cDNA 403 415 MATCH C08SLe0084H03.1+ SGN-E307229+ 1.000 402 0.969 C PGS_C08SLe0084H03.1+_SGN-E307229+ (51647 51751,51872 52168) Alignment (genomic DNA sequence = upper lines): TTGGTTCATT TGGCCACCAT CCCCATCACC GGAACTGGCA TCAACCCCGC CAGGAGTCTT 51706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTTCATT TGGCCACCAT CCCCATCACC GGAACTGGCA TCAACCCCGC CAGGAGTCTT 60 GGAGCTGCTA TCATCTACAA CGACGAGCAT GCATGGAATG ACCACGTAAG AAAAACATCT 51766 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GGAGCTGCTA TCATCTACAA CGACGAGCAT GCATGGAATG ACCAC..... .......... 105 TTCATTCTTT TAAACTGACT CGAACACCAC AGTTACTTGA ACCAAAAAAA GGAGAGCTTA 51826 .......... .......... .......... .......... .......... .......... 105 ATCTAACAAA GGGGTTCTTG TTTGTTTTTT GTTGTTTTTG AACAGTGGAT CTTCTGGGTT 51886 ||||| |||||||||| .......... .......... .......... .......... .....TGGAT CTTCTGGGTT 120 GGACCAATGA TTGGAGCTGC TCTTGCTGCT ATTTACCACC AAATAATTAT CAGAGCTATG 51946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCAATGA TTGGAGCTGC TCTTGCTGCT ATTTACCACC AAATAATTAT CAGAGCTATG 180 CCATTCCACA GGTCTTAAGT TATCTGTCTT TAAACAATGG GATTCTCAAA GACTCAACAG 52006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTCCACA GGTCTTAAGT TATCTGTCTT TAAACAATGG GATTCTCAAA GACTCAACAG 240 TGTACTTTTG TCTTCTTTTT TTGGGGGGTT GAATGTTCAA GTTTCTCCTT CAATGTATTT 52066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTTTTG TCTTCTTTTT TTGGGGGGTT GAATGTTCAA GTTTCTCCTT CAATGTATTT 300 GTAATGTGGA TCTGTTCCTT CTGTTAAGAT GTTCTATTAT GTGTGTAAAT TATCAGGTTA 52126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATGTGGA TCTGTTCCTT CTGTTAAGAT GTTCTATTAT GTGTGTAAAT TATCAGGTTA 360 TGATAATGTA ATGTACCTTA TCAATGAAGG TTCTTTATTT TT 52168 |||||||||| |||||||||| |||||||||| |||||||||| || TGATAATGTA ATGTACCTTA TCAATGAAGG TTCTTTATTT TT 402 hqPGS_C08SLe0084H03.1+_SGN-E307229+ (51647 51751,51872 52168) ******************************************************************************** EST sequence 246 -strand 398 n (File: SGN-E221816-) 1 CGGAACTGGC ATCAACCCCG CCAGGAGTCT TGGAACTGAC TATCATCTAC AACGACGAGC 61 ATGCATGGAA TGACCACTGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT GCTCTTGCTG 121 CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA GTTATCTGTC 181 TTTAAACAAT GGGATTCTCA AAGACTCAAC AGTGTACTTT TGTCTTCTTT TTTTGGGGGG 241 TTGAATGTTC AAGTTTCTCC TTCAATGTAT TTGTAATGTG GATCTGTTCC TTCTGTTAAG 301 ATGTTCTATT ATGTGTGTAA ATTATCAGGT TATGATAATG TAATGTACCT TATCAATGAA 361 GGTTCTTTAT TTTTATCTTT GAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 51066 to 52927): Exon 1 51676 51751 ( 76 n); cDNA 1 77 ( 77 n); score: 0.954 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 0.93), Pa: 0.991 (s: 1.00) Exon 2 51872 52177 ( 306 n); cDNA 78 383 ( 306 n); score: 1.000 PPA cDNA 384 398 MATCH C08SLe0084H03.1+ SGN-E221816- 0.991 382 0.960 C PGS_C08SLe0084H03.1+_SGN-E221816- (51676 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): CGGAACTGGC ATCAACCCCG CCAGGAGTCT TGGAGCTG-C TATCATCTAC AACGACGAGC 51734 |||||||||| |||||||||| |||||||||| |||| ||| | |||||||||| |||||||||| CGGAACTGGC ATCAACCCCG CCAGGAGTCT TGGAACTGAC TATCATCTAC AACGACGAGC 60 ATGCATGGAA TGACCACGTA AGAAAAACAT CTTTCATTCT TTTAAACTGA CTCGAACACC 51794 |||||||||| ||||||| ATGCATGGAA TGACCAC... .......... .......... .......... .......... 77 ACAGTTACTT GAACCAAAAA AAGGAGAGCT TAATCTAACA AAGGGGTTCT TGTTTGTTTT 51854 .......... .......... .......... .......... .......... .......... 77 TTGTTGTTTT TGAACAGTGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT GCTCTTGCTG 51914 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......TGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT GCTCTTGCTG 120 CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA GTTATCTGTC 51974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA GTTATCTGTC 180 TTTAAACAAT GGGATTCTCA AAGACTCAAC AGTGTACTTT TGTCTTCTTT TTTTGGGGGG 52034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAACAAT GGGATTCTCA AAGACTCAAC AGTGTACTTT TGTCTTCTTT TTTTGGGGGG 240 TTGAATGTTC AAGTTTCTCC TTCAATGTAT TTGTAATGTG GATCTGTTCC TTCTGTTAAG 52094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATGTTC AAGTTTCTCC TTCAATGTAT TTGTAATGTG GATCTGTTCC TTCTGTTAAG 300 ATGTTCTATT ATGTGTGTAA ATTATCAGGT TATGATAATG TAATGTACCT TATCAATGAA 52154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCTATT ATGTGTGTAA ATTATCAGGT TATGATAATG TAATGTACCT TATCAATGAA 360 GGTTCTTTAT TTTTATCTTT GAA 52177 |||||||||| |||||||||| ||| GGTTCTTTAT TTTTATCTTT GAA 383 hqPGS_C08SLe0084H03.1+_SGN-E221816- (51676 51751,51872 52177) ******************************************************************************** EST sequence 245 -strand 389 n (File: SGN-E221723-) 1 GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA 61 ATGACCACTG GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC 121 ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA 181 TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT 241 CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCTGTTC CTTCTGTTAA GATGTTCTAT 301 TATGTGTGTA AATTATCAGG TTATGATAAT GTAATGTACC TTATCAATGA AGGTTCTTTA 361 TTTTTATCTT TGAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 51074 to 52927): Exon 1 51684 51751 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 2 51872 52177 ( 306 n); cDNA 69 374 ( 306 n); score: 1.000 PPA cDNA 375 389 MATCH C08SLe0084H03.1+ SGN-E221723- 1.000 374 0.961 C PGS_C08SLe0084H03.1+_SGN-E221723- (51684 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA 51743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCAACCC CGCCAGGAGT CTTGGAGCTG CTATCATCTA CAACGACGAG CATGCATGGA 60 ATGACCACGT AAGAAAAACA TCTTTCATTC TTTTAAACTG ACTCGAACAC CACAGTTACT 51803 |||||||| ATGACCAC.. .......... .......... .......... .......... .......... 68 TGAACCAAAA AAAGGAGAGC TTAATCTAAC AAAGGGGTTC TTGTTTGTTT TTTGTTGTTT 51863 .......... .......... .......... .......... .......... .......... 68 TTGAACAGTG GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC 51923 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TG GATCTTCTGG GTTGGACCAA TGATTGGAGC TGCTCTTGCT GCTATTTACC 120 ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA 51983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAATAAT TATCAGAGCT ATGCCATTCC ACAGGTCTTA AGTTATCTGT CTTTAAACAA 180 TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT 52043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT TTTTTGGGGG GTTGAATGTT 240 CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCTGTTC CTTCTGTTAA GATGTTCTAT 52103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCTGTTC CTTCTGTTAA GATGTTCTAT 300 TATGTGTGTA AATTATCAGG TTATGATAAT GTAATGTACC TTATCAATGA AGGTTCTTTA 52163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTGTGTA AATTATCAGG TTATGATAAT GTAATGTACC TTATCAATGA AGGTTCTTTA 360 TTTTTATCTT TGAA 52177 |||||||||| |||| TTTTTATCTT TGAA 374 hqPGS_C08SLe0084H03.1+_SGN-E221723- (51684 51751,51872 52177) ******************************************************************************** EST sequence 158 -strand 382 n (File: SGN-E225563-) 1 CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCCCT 61 GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CCCCAAATAA 121 TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 181 CAAAGACTCA ACAGTGGACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 241 CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AAATGTTCTA TTATGTGTGT 301 AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT TAAAAAAAAA 361 AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 51083 to 53082): Exon 1 51693 51751 ( 59 n); cDNA 1 59 ( 59 n); score: 0.983 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 0.98), Pa: 0.991 (s: 1.00) Exon 2 51872 52162 ( 291 n); cDNA 60 350 ( 291 n); score: 0.990 PPA cDNA 352 382 MATCH C08SLe0084H03.1+ SGN-E225563- 0.989 350 0.916 C PGS_C08SLe0084H03.1+_SGN-E225563- (51693 51751,51872 52162) Alignment (genomic DNA sequence = upper lines): CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCACG 51752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | CCGCCAGGAG TCTTGGAGCT GCTATCATCT ACAACGACGA GCATGCATGG AATGACCCC. 59 TAAGAAAAAC ATCTTTCATT CTTTTAAACT GACTCGAACA CCACAGTTAC TTGAACCAAA 51812 .......... .......... .......... .......... .......... .......... 59 AAAAGGAGAG CTTAATCTAA CAAAGGGGTT CTTGTTTGTT TTTTGTTGTT TTTGAACAGT 51872 | .......... .......... .......... .......... .......... .........T 60 GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CACCAAATAA 51932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC CCCCAAATAA 120 TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 51992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA ATGGGATTCT 180 CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 52052 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGACTCA ACAGTGGACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT TCAAGTTTCT 240 CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA TTATGTGTGT 52112 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AAATGTTCTA TTATGTGTGT 300 AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT 52162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT 350 hqPGS_C08SLe0084H03.1+_SGN-E225563- (51693 51751,51872 52162) ******************************************************************************** EST sequence 262 -strand 349 n (File: SGN-E237184-) 1 AACGACGAGC ATGCATGGAA TGACCACTGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT 61 GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA 121 GTTATCTGTC TTTAAACAAT GGGAGTTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT 181 TTTTTGGGGG GTTGAATGTT CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCTGTTC 241 CTTCTGTTAA GATGTTCTAT TATGTGTGTA AATTATCAGG TTATGATAAT GTAATGTACC 301 TTATCAATGA AGGTTCTTTA TTTTTCTCTT TGAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 50992 to 53008): Exon 1 51725 51751 ( 27 n); cDNA 1 27 ( 27 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 51872 52177 ( 306 n); cDNA 28 334 ( 307 n); score: 0.989 PPA cDNA 335 349 MATCH C08SLe0084H03.1+ SGN-E237184- 0.989 333 0.954 C PGS_C08SLe0084H03.1+_SGN-E237184- (51725 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): AACGACGAGC ATGCATGGAA TGACCACGTA AGAAAAACAT CTTTCATTCT TTTAAACTGA 51784 |||||||||| |||||||||| ||||||| AACGACGAGC ATGCATGGAA TGACCAC... .......... .......... .......... 27 CTCGAACACC ACAGTTACTT GAACCAAAAA AAGGAGAGCT TAATCTAACA AAGGGGTTCT 51844 .......... .......... .......... .......... .......... .......... 27 TGTTTGTTTT TTGTTGTTTT TGAACAGTGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT 51904 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT 60 GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA 51964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTTGCTG CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA 120 GTTATCTGTC TTTAAACAAT GGGA-TTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT 52023 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| GTTATCTGTC TTTAAACAAT GGGAGTTCTC AAAGACTCAA CAGTGTACTT TTGTCTTCTT 180 TTTTTGGGGG GTTGAATGTT CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCTGTTC 52083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTGGGGG GTTGAATGTT CAAGTTTCTC CTTCAATGTA TTTGTAATGT GGATCTGTTC 240 CTTCTGTTAA GATGTTCTAT TATGTGTGTA AATTATCAGG TTATGATAAT GTAATGTACC 52143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGTTAA GATGTTCTAT TATGTGTGTA AATTATCAGG TTATGATAAT GTAATGTACC 300 TTATCAATGA AGGTTCTTTA TTTTTATCTT TGAA 52177 |||||||||| |||||||||| ||||| |||| |||| TTATCAATGA AGGTTCTTTA TTTTTCTCTT TGAA 334 hqPGS_C08SLe0084H03.1+_SGN-E237184- (51725 51751,51872 52177) ******************************************************************************** EST sequence 92 +strand 333 n (File: SGN-E300371+) 1 TGCAGGGGAA TGACCACTGG ATCTTCTGGG TTGGACCAAT GATTGGAGCT GCTCTTGCTG 61 CTATTTACCA CCAAATAATT ATCAGAGCTA TGCCATTCCA CAGGTCTTAA GTTATCTGTC 121 TTTAAACAAT GGGATTCTCA AAGACTCAAC AGTGTACTTT TGTCTTCTTT TTTTGGGGGG 181 TTGAATGTTC AAGTTTCTCC TTCAATGTAT TTGTAATGTG GATCTGTTCC TTCTGTTAAG 241 ATGTTCTATT ATGTGTGTAA ATTATCAGGT TATGATAATG TAATGTACCT TATCAATGAA 301 GGTTCTTTAT TTTTATCTTT GAAAAAAAAA AAA Predicted gene structure (within gDNA segment 51102 to 52887): Exon 1 51741 51751 ( 11 n); cDNA 7 17 ( 11 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 51872 52177 ( 306 n); cDNA 18 323 ( 306 n); score: 1.000 PPA cDNA 324 333 MATCH C08SLe0084H03.1+ SGN-E300371+ 1.000 317 0.952 C PGS_C08SLe0084H03.1+_SGN-E300371+ (51741 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): GGAATGACCA CGTAAGAAAA ACATCTTTCA TTCTTTTAAA CTGACTCGAA CACCACAGTT 51800 |||||||||| | GGAATGACCA C......... .......... .......... .......... .......... 17 ACTTGAACCA AAAAAAGGAG AGCTTAATCT AACAAAGGGG TTCTTGTTTG TTTTTTGTTG 51860 .......... .......... .......... .......... .......... .......... 17 TTTTTGAACA GTGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 51920 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TGGATCTTC TGGGTTGGAC CAATGATTGG AGCTGCTCTT GCTGCTATTT 66 ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 51980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCAAAT AATTATCAGA GCTATGCCAT TCCACAGGTC TTAAGTTATC TGTCTTTAAA 126 CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT 52040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGGATT CTCAAAGACT CAACAGTGTA CTTTTGTCTT CTTTTTTTGG GGGGTTGAAT 186 GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 52100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAGTTT CTCCTTCAAT GTATTTGTAA TGTGGATCTG TTCCTTCTGT TAAGATGTTC 246 TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 52160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTATGTGT GTAAATTATC AGGTTATGAT AATGTAATGT ACCTTATCAA TGAAGGTTCT 306 TTATTTTTAT CTTTGAA 52177 |||||||||| ||||||| TTATTTTTAT CTTTGAA 323 hqPGS_C08SLe0084H03.1+_SGN-E300371+ (51741 51751,51872 52177) ******************************************************************************** EST sequence 227 -strand 323 n (File: SGN-E394110-) 1 AATGACCACT GGATCTTTTG GGTTGGACCA ATGATTGGAG GTGCTCTTGC TGCTATTTAC 61 CACCAAATAA TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA 121 ATGGGATTTT CAAAGACTCA ACAGTGTACT TTTGTTTTCT TTTTTTGGGG GGTTGAATGT 181 TCAAGTTTCT CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA 241 TTATGTGTGT AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT 301 ATTTTTATCT TGAAAAAAAA AAA Predicted gene structure (within gDNA segment 51091 to 52893): Exon 1 51743 51751 ( 9 n); cDNA 1 9 ( 9 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 (s: 0), Pa: 0.991 (s: 0.96) Exon 2 51872 52177 ( 306 n); cDNA 10 315 ( 306 n); score: 0.980 MATCH C08SLe0084H03.1+ SGN-E394110- 0.980 315 0.975 C PGS_C08SLe0084H03.1+_SGN-E394110- (51743 51751,51872 52177) Alignment (genomic DNA sequence = upper lines): AATGACCACG TAAGAAAAAC ATCTTTCATT CTTTTAAACT GACTCGAACA CCACAGTTAC 51802 ||||||||| AATGACCAC. .......... .......... .......... .......... .......... 9 TTGAACCAAA AAAAGGAGAG CTTAATCTAA CAAAGGGGTT CTTGTTTGTT TTTTGTTGTT 51862 .......... .......... .......... .......... .......... .......... 9 TTTGAACAGT GGATCTTCTG GGTTGGACCA ATGATTGGAG CTGCTCTTGC TGCTATTTAC 51922 | ||||||| || |||||||||| |||||||||| ||||||||| |||||||||| .........T GGATCTTTTG GGTTGGACCA ATGATTGGAG GTGCTCTTGC TGCTATTTAC 60 CACCAAATAA TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA 51982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCAAATAA TTATCAGAGC TATGCCATTC CACAGGTCTT AAGTTATCTG TCTTTAAACA 120 ATGGGATTCT CAAAGACTCA ACAGTGTACT TTTGTCTTCT TTTTTTGGGG GGTTGAATGT 52042 |||||||| | |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ATGGGATTTT CAAAGACTCA ACAGTGTACT TTTGTTTTCT TTTTTTGGGG GGTTGAATGT 180 TCAAGTTTCT CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA 52102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGTTTCT CCTTCAATGT ATTTGTAATG TGGATCTGTT CCTTCTGTTA AGATGTTCTA 240 TTATGTGTGT AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT 52162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGTGTGT AAATTATCAG GTTATGATAA TGTAATGTAC CTTATCAATG AAGGTTCTTT 300 ATTTTTATCT TTGAA 52177 |||||||||| | || ATTTTTATCT TGAAA 315 hqPGS_C08SLe0084H03.1+_SGN-E394110- (51743 51751,51872 52177) ******************************************************************************** EST sequence 96 -strand 288 n (File: SGN-E308441-) 1 TTTTTTTTTT CAAAGATAAA AATAAAGAAC CTTCATTGAT AAGGTACATT ACATTATCAT 61 AACCTGATAA TTTGCACACA TAATAGAACA TCTTAACAGA AGGAACAGAT CCACATTACA 121 AATACATTGA AGGAGAAACT TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTACAC 181 TGTTGAGTCT TTGAGAATCC CATTGTTTAA AGACAGATAA CTTAAGACCT GTGGAATGGC 241 ATAGCTCTGA TAATTATTTG GTGGTAAATA GCAGCAAGAG CAGCTCCA Predicted gene structure (within gDNA segment 52867 to 51298): Exon 1 52285 52278 ( 8 n); cDNA 1 8 ( 8 n); score: 0.750 Intron 1 52277 52178 ( 100 n); Pd: 0.814 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 52177 51898 ( 280 n); cDNA 9 288 ( 280 n); score: 0.996 MATCH C08SLe0084H03.1- SGN-E308441- 0.996 288 1.000 C PGS_C08SLe0084H03.1-_SGN-E308441- (52285 52278,52177 51898) Alignment (genomic DNA sequence = upper lines): TTTAATTTGT TTGTCTTTTT TTTCTTTCTA GTCCGTCTCT AAAAGTACAA TCAGTTTGTT 52226 ||| ||| TTTTTTTT.. .......... .......... .......... .......... .......... 8 TCTCAACTCC GTATCAAGTC AAAACTAGAA AAACAAATTG AGACGCGGTT CAAAGATAAA 52166 || |||||||||| .......... .......... .......... .......... ........TT CAAAGATAAA 20 AATAAAGAAC CTTCATTGAT AAGGTACATT ACATTATCAT AACCTGATAA TTTACACACA 52106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AATAAAGAAC CTTCATTGAT AAGGTACATT ACATTATCAT AACCTGATAA TTTGCACACA 80 TAATAGAACA TCTTAACAGA AGGAACAGAT CCACATTACA AATACATTGA AGGAGAAACT 52046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAGAACA TCTTAACAGA AGGAACAGAT CCACATTACA AATACATTGA AGGAGAAACT 140 TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTACAC TGTTGAGTCT TTGAGAATCC 51986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTACAC TGTTGAGTCT TTGAGAATCC 200 CATTGTTTAA AGACAGATAA CTTAAGACCT GTGGAATGGC ATAGCTCTGA TAATTATTTG 51926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTTAA AGACAGATAA CTTAAGACCT GTGGAATGGC ATAGCTCTGA TAATTATTTG 260 GTGGTAAATA GCAGCAAGAG CAGCTCCA 51898 |||||||||| |||||||||| |||||||| GTGGTAAATA GCAGCAAGAG CAGCTCCA 288 hqPGS_C08SLe0084H03.1-_SGN-E308441- (52285 52278,52177 51898) ******************************************************************************** EST sequence 196 +strand 287 n (File: SGN-E218166+) 1 TTTTTTTTTT TTTTTTTCAA AGAGAAAAAT AAAGAACCTT CATGGATAAG GTACATTACA 61 TTATCATAAC CTGTTATTTT ACACACATAA TAGATCATCT TAACAGAAGG AACAGATCCA 121 CATTACAAAT ACATTGAAGG AGAAACTCGA ACATTCAACC CCCCAAAAAA AGAAGACAAA 181 AGTCCACTGT TGAGTCTTTG AGAATCCCAT TGTTTAAAGA CAGATAACTT AAGACCTGCG 241 GAATGGCATA GCTCTGATAA TTATTTGGGG GAAAATAGCA GCAAGAG Predicted gene structure (within gDNA segment 53008 to 51125): Exon 1 52286 52278 ( 9 n); cDNA 7 15 ( 9 n); score: 0.778 Intron 1 52277 52178 ( 100 n); Pd: 0.814 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 52177 51906 ( 272 n); cDNA 16 287 ( 272 n); score: 0.963 MATCH C08SLe0084H03.1- SGN-E218166+ 0.963 281 0.979 C PGS_C08SLe0084H03.1-_SGN-E218166+ (52286 52278,52177 51906) Alignment (genomic DNA sequence = upper lines): TTTTAATTTG TTTGTCTTTT TTTTCTTTCT AGTCCGTCTC TAAAAGTACA ATCAGTTTGT 52227 |||| ||| TTTTTTTTT. .......... .......... .......... .......... .......... 15 TTCTCAACTC CGTATCAAGT CAAAACTAGA AAAACAAATT GAGACGCGGT TCAAAGATAA 52167 | ||||||| || .......... .......... .......... .......... .........T TCAAAGAGAA 26 AAATAAAGAA CCTTCATTGA TAAGGTACAT TACATTATCA TAACCTGATA ATTTACACAC 52107 |||||||||| ||||||| || |||||||||| |||||||||| ||||||| || ||||||||| AAATAAAGAA CCTTCATGGA TAAGGTACAT TACATTATCA TAACCTGTTA TTTTACACAC 86 ATAATAGAAC ATCTTAACAG AAGGAACAGA TCCACATTAC AAATACATTG AAGGAGAAAC 52047 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATAGATC ATCTTAACAG AAGGAACAGA TCCACATTAC AAATACATTG AAGGAGAAAC 146 TTGAACATTC AACCCCCCAA AAAAAGAAGA CAAAAGTACA CTGTTGAGTC TTTGAGAATC 51987 | |||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TCGAACATTC AACCCCCCAA AAAAAGAAGA CAAAAGTCCA CTGTTGAGTC TTTGAGAATC 206 CCATTGTTTA AAGACAGATA ACTTAAGACC TGTGGAATGG CATAGCTCTG ATAATTATTT 51927 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CCATTGTTTA AAGACAGATA ACTTAAGACC TGCGGAATGG CATAGCTCTG ATAATTATTT 266 GGTGGTAAAT AGCAGCAAGA G 51906 || || |||| |||||||||| | GGGGGAAAAT AGCAGCAAGA G 287 hqPGS_C08SLe0084H03.1-_SGN-E218166+ (52286 52278,52177 51906) ******************************************************************************** EST sequence 195 +strand 235 n (File: SGN-E217946+) 1 GTTTTTTTTT TTTTTTCAAA GAGAAAAAAA AAGAACCTTC ATGGGTCAGG TACATTACAT 61 TATGATAACC TGTTAATTTA CACACATAAT AGATCATCTT AACAGAAGGA ACAGATCCAC 121 ATTACAAATA CATTGAAGGA GAAACTTGTA CATTCAGCCC CCCAAACAAA GAAGACAAAA 181 GTCCACTGTT TATTCTTTGA GAATCCCATT GTTTAAAGAC AGATAACTTA AGACC Predicted gene structure (within gDNA segment 53214 to 51347): Exon 1 52286 52278 ( 9 n); cDNA 6 14 ( 9 n); score: 0.778 Intron 1 52277 52178 ( 100 n); Pd: 0.814 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 52177 51957 ( 221 n); cDNA 15 235 ( 221 n); score: 0.937 MATCH C08SLe0084H03.1- SGN-E217946+ 0.937 230 0.979 C PGS_C08SLe0084H03.1-_SGN-E217946+ (52286 52278,52177 51957) Alignment (genomic DNA sequence = upper lines): TTTTAATTTG TTTGTCTTTT TTTTCTTTCT AGTCCGTCTC TAAAAGTACA ATCAGTTTGT 52227 |||| ||| TTTTTTTTT. .......... .......... .......... .......... .......... 14 TTCTCAACTC CGTATCAAGT CAAAACTAGA AAAACAAATT GAGACGCGGT TCAAAGATAA 52167 | ||||||| || .......... .......... .......... .......... .........T TCAAAGAGAA 25 AAATAAAGAA CCTTCATTGA TAAGGTACAT TACATTATCA TAACCTGATA ATTTACACAC 52107 ||| |||||| ||||||| | | |||||||| |||||||| | ||||||| || |||||||||| AAAAAAAGAA CCTTCATGGG TCAGGTACAT TACATTATGA TAACCTGTTA ATTTACACAC 85 ATAATAGAAC ATCTTAACAG AAGGAACAGA TCCACATTAC AAATACATTG AAGGAGAAAC 52047 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATAGATC ATCTTAACAG AAGGAACAGA TCCACATTAC AAATACATTG AAGGAGAAAC 145 TTGAACATTC AACCCCCCAA AAAAAGAAGA CAAAAGTACA CTGTTGAGTC TTTGAGAATC 51987 ||| |||||| | |||||||| | |||||||| ||||||| || ||||| | || |||||||||| TTGTACATTC AGCCCCCCAA ACAAAGAAGA CAAAAGTCCA CTGTTTATTC TTTGAGAATC 205 CCATTGTTTA AAGACAGATA ACTTAAGACC 51957 |||||||||| |||||||||| |||||||||| CCATTGTTTA AAGACAGATA ACTTAAGACC 235 hqPGS_C08SLe0084H03.1-_SGN-E217946+ (52286 52278,52177 51957) ******************************************************************************** EST sequence 144 +strand 302 n (File: SGN-E577844+) 1 TTTTTTTCAA AGATAAAAAT AAAGAACCTT CATTGATAAG GTACATTACA TTATCATAAC 61 CTGATAATTT ACACACATAA TAGAACATCT TAACAGAAGG AACAGATCCA CATTACAAAT 121 ACATTGAAGG AGAAACTTGA ACATTCAACC CCCCAAAAAA AGAAGACAAA AGTACACTGT 181 TGAGTCTTTG AGAATCCCAT TGTTTAAAGA CAGATAACTT AAGACCTGTG GAATGGCATA 241 GCTCTGATAA TTATTTGGTG GTAAATAGCA GCAAGAGCAG CTCCAATCAT TGGTCCAACC 301 CA Predicted gene structure (within gDNA segment 52827 to 51271): Exon 1 52177 51881 ( 297 n); cDNA 6 302 ( 297 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E577844+ 1.000 297 0.983 C PGS_C08SLe0084H03.1-_SGN-E577844+ (52177 51881) Alignment (genomic DNA sequence = upper lines): TTCAAAGATA AAAATAAAGA ACCTTCATTG ATAAGGTACA TTACATTATC ATAACCTGAT 52118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAGATA AAAATAAAGA ACCTTCATTG ATAAGGTACA TTACATTATC ATAACCTGAT 65 AATTTACACA CATAATAGAA CATCTTAACA GAAGGAACAG ATCCACATTA CAAATACATT 52058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTACACA CATAATAGAA CATCTTAACA GAAGGAACAG ATCCACATTA CAAATACATT 125 GAAGGAGAAA CTTGAACATT CAACCCCCCA AAAAAAGAAG ACAAAAGTAC ACTGTTGAGT 51998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAGAAA CTTGAACATT CAACCCCCCA AAAAAAGAAG ACAAAAGTAC ACTGTTGAGT 185 CTTTGAGAAT CCCATTGTTT AAAGACAGAT AACTTAAGAC CTGTGGAATG GCATAGCTCT 51938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAGAAT CCCATTGTTT AAAGACAGAT AACTTAAGAC CTGTGGAATG GCATAGCTCT 245 GATAATTATT TGGTGGTAAA TAGCAGCAAG AGCAGCTCCA ATCATTGGTC CAACCCA 51881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GATAATTATT TGGTGGTAAA TAGCAGCAAG AGCAGCTCCA ATCATTGGTC CAACCCA 302 hqPGS_C08SLe0084H03.1-_SGN-E577844+ (52177 51881) ******************************************************************************** EST sequence 152 +strand 300 n (File: SGN-E222655+) 1 TTTTTTTTTT TTTTGGGGGG TAAAAATAAA GAACCTGGAT TGATAAGGTA CATTACATTA 61 TCATAACCTG ATAATTTCCA CACATAATAG AACATTTTAA CAGAAGGAAC AGATCCACAT 121 TACAAATACA TTGAAGGAGA AACTTGAACA TTCAACCCCC CAAAAAAAGA AGACAAAAGT 181 ACACTGTTGA GTCTTTGAGA ATCCCATTGT TTAAAGACAG ATAACTTAAG ACCTGTGGAA 241 TGGCATAGCT CTGATAATTA TTGGGTGGTA AATAGCAGCA AGAGCAGCTC CAATCATTGG Predicted gene structure (within gDNA segment 52969 to 51280): Exon 1 52169 51890 ( 280 n); cDNA 21 300 ( 280 n); score: 0.982 PPA cDNA 14 1 MATCH C08SLe0084H03.1- SGN-E222655+ 0.982 280 0.933 C PGS_C08SLe0084H03.1-_SGN-E222655+ (52169 51890) Alignment (genomic DNA sequence = upper lines): TAAAAATAAA GAACCTTCAT TGATAAGGTA CATTACATTA TCATAACCTG ATAATTTACA 52110 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ||||||| || TAAAAATAAA GAACCTGGAT TGATAAGGTA CATTACATTA TCATAACCTG ATAATTTCCA 80 CACATAATAG AACATCTTAA CAGAAGGAAC AGATCCACAT TACAAATACA TTGAAGGAGA 52050 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CACATAATAG AACATTTTAA CAGAAGGAAC AGATCCACAT TACAAATACA TTGAAGGAGA 140 AACTTGAACA TTCAACCCCC CAAAAAAAGA AGACAAAAGT ACACTGTTGA GTCTTTGAGA 51990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGAACA TTCAACCCCC CAAAAAAAGA AGACAAAAGT ACACTGTTGA GTCTTTGAGA 200 ATCCCATTGT TTAAAGACAG ATAACTTAAG ACCTGTGGAA TGGCATAGCT CTGATAATTA 51930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCATTGT TTAAAGACAG ATAACTTAAG ACCTGTGGAA TGGCATAGCT CTGATAATTA 260 TTTGGTGGTA AATAGCAGCA AGAGCAGCTC CAATCATTGG 51890 || ||||||| |||||||||| |||||||||| |||||||||| TTGGGTGGTA AATAGCAGCA AGAGCAGCTC CAATCATTGG 300 hqPGS_C08SLe0084H03.1-_SGN-E222655+ (52169 51890) ******************************************************************************** EST sequence 166 +strand 319 n (File: SGN-E218835+) 1 TTTTTTTTTT TTTTTTTTTG GGTTTTTTTT ATTTTTTTTC CAAAGATAAA AATAAAGAAC 61 CTTCATTGAT AGGGTCCATT ACATTATCAT ACCCTGATAA TTTACACACA TAATAGATCA 121 TCTTAACAGA GGGAACAGAT CCACATTACA AATACATTGA AGGAGAAACT TGAACATTCA 181 ACCCCCCAAA AAAAGAAGAC AAAAGTCCAC TGTGGGGTTT TTGAGAATCC CATTGTTTAA 241 AGACAGATAA CTAAAGACCT GGGGAATGGC ATAGCTTTGA TAATTATTGG GGGGTAAATA 301 GCAACAAGAG CGGTTCCAA Predicted gene structure (within gDNA segment 53175 to 50684): Exon 1 52175 51897 ( 279 n); cDNA 41 319 ( 279 n); score: 0.939 PPA cDNA 39 23 MATCH C08SLe0084H03.1- SGN-E218835+ 0.939 279 0.875 C PGS_C08SLe0084H03.1-_SGN-E218835+ (52175 51897) Alignment (genomic DNA sequence = upper lines): CAAAGATAAA AATAAAGAAC CTTCATTGAT AAGGTACATT ACATTATCAT AACCTGATAA 52116 |||||||||| |||||||||| |||||||||| | ||| |||| |||||||||| | |||||||| CAAAGATAAA AATAAAGAAC CTTCATTGAT AGGGTCCATT ACATTATCAT ACCCTGATAA 100 TTTACACACA TAATAGAACA TCTTAACAGA AGGAACAGAT CCACATTACA AATACATTGA 52056 |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| |||||||||| TTTACACACA TAATAGATCA TCTTAACAGA GGGAACAGAT CCACATTACA AATACATTGA 160 AGGAGAAACT TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTACAC TGTTGAGTCT 51996 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||| | || | AGGAGAAACT TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTCCAC TGTGGGGTTT 220 TTGAGAATCC CATTGTTTAA AGACAGATAA CTTAAGACCT GTGGAATGGC ATAGCTCTGA 51936 |||||||||| |||||||||| |||||||||| || ||||||| | |||||||| |||||| ||| TTGAGAATCC CATTGTTTAA AGACAGATAA CTAAAGACCT GGGGAATGGC ATAGCTTTGA 280 TAATTATTTG GTGGTAAATA GCAGCAAGAG CAGCTCCAA 51897 |||||||| | | |||||||| ||| |||||| | | ||||| TAATTATTGG GGGGTAAATA GCAACAAGAG CGGTTCCAA 319 hqPGS_C08SLe0084H03.1-_SGN-E218835+ (52175 51897) ******************************************************************************** EST sequence 235 +strand 430 n (File: SGN-E266732+) 1 AATAAAGAAC CTTCATTGAT AAGGTACATT ACATTATCAT AACCTGATAA TTTACACACA 61 TAATAGAACA TCTTAACAGA AAGAACAGAT CCACATTACA AATACATTGA AGGAGAAACT 121 TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTACAC TGTTGAGTCT TTGAGAATCC 181 CATTGTTTAA AGACAGATAA CTTAAGACCT GTGAACAAAG AGCTGGTTTA TAATTTCATA 241 AAGCAACACT AACTAGTCTC AATCAGCAAG AAAGTTTATT AAAGTTGTTA AAAAAAAAAG 301 TGCAGGTAAT CAAATGAACA AAAATACTCT TCTCTATGGC TTTACTAATT GCATAACTTA 361 GTAGTATGAG ATAATTCATC ATTTCTCTGC TTCACTATGA ACCATTCAGC TCATAATCTT 421 TGGTTTTTTT Predicted gene structure (within gDNA segment 52765 to 47373): Exon 1 52165 51926 ( 240 n); cDNA 1 237 ( 237 n); score: 0.946 Intron 1 51925 51857 ( 69 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0) Exon 2 51856 51834 ( 23 n); cDNA 238 259 ( 22 n); score: 0.609 Intron 2 51833 49545 (2289 n); Pd: 0.157 (s: 0), Pa: 0.693 (s: 0) Exon 3 49544 49513 ( 32 n); cDNA 260 290 ( 31 n); score: 0.625 Intron 3 49512 48529 ( 984 n); Pd: 0.499 (s: 0), Pa: 0.700 (s: 0) Exon 4 48528 48495 ( 34 n); cDNA 291 322 ( 32 n); score: 0.676 MATCH C08SLe0084H03.1- SGN-E266732+ 0.946 329 0.765 C PGS_C08SLe0084H03.1-_SGN-E266732+ (52165 51926,51856 51834,49544 49513,48528 48495) Alignment (genomic DNA sequence = upper lines): AATAAAGAAC CTTCATTGAT AAGGTACATT ACATTATCAT AACCTGATAA TTTACACACA 52106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAAGAAC CTTCATTGAT AAGGTACATT ACATTATCAT AACCTGATAA TTTACACACA 60 TAATAGAACA TCTTAACAGA AGGAACAGAT CCACATTACA AATACATTGA AGGAGAAACT 52046 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TAATAGAACA TCTTAACAGA AAGAACAGAT CCACATTACA AATACATTGA AGGAGAAACT 120 TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTACAC TGTTGAGTCT TTGAGAATCC 51986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACATTCA ACCCCCCAAA AAAAGAAGAC AAAAGTACAC TGTTGAGTCT TTGAGAATCC 180 CATTGTTTAA AGACAGATAA CTTAAGACCT GTGGAATGGC ATAGCTCTGA TAATTATTTG 51926 |||||||||| |||||||||| |||||||||| || ||| | |||| | | || |||| CATTGTTTAA AGACAGATAA CTTAAGACCT GT-GAA-CAA AGAGCT-GGT TTATAATTTC 237 GTGGTAAATA GCAGCAAGAG CAGCTCCAAT CATTGGTCCA ACCCAGAAGA TCCACTGTTC 51866 .......... .......... .......... .......... .......... .......... 237 AAAAACAACA AAAAACAAAC AAGAACCCCT TTGTTAGATT AAGCTCTCCT TTTTTTGGTT 51806 | ||| | ||| | ||| | | .........A TAAAGC-AAC ACTAACTAGT CT........ .......... .......... 259 CAAGTAACTG TGGTGTTCGA GTCAGTTTAA AAGAATGAAA GATGTTTTTC TTACGTGGTC 51746 .......... .......... .......... .......... .......... .......... 259 ATTCCATGCA TGCTCGTCGT TGTAGATGAT AGCAGCTCCA AGACTCCTGG CGGGGTTGAT 51686 .......... .......... .......... .......... .......... .......... 259 GCCAGTTCCG GTGATGGGGA TGGTGGCCAA ATGAACCAAG AACACTGCGA ATCCAATAGG 51626 .......... .......... .......... .......... .......... .......... 259 AAGTGGTGCC AAAATCTACA ATAAACATAA AGATTATCAG ACAAATGTCT TCCAAGGATT 51566 .......... .......... .......... .......... .......... .......... 259 TCTCTTAGAC ATAAGCGCAA AAAGATAGTT GTGGTGAGCT AAGACTGGCC AACAATGTTC 51506 .......... .......... .......... .......... .......... .......... 259 TTATGTGATC ATTCTATATA AAATAGGCGT TGATGAATAG TATCACACCA TTATCCGGAC 51446 .......... .......... .......... .......... .......... .......... 259 ACTACAATAA TATGAAATTT GGTGTCATTT ACATCTCCAC TCCACAAAAT ACAAAGAAAC 51386 .......... .......... .......... .......... .......... .......... 259 TTAACTCAAC GTATAAATTC TACGTTTTTG AAAACTCCCT AATATACCAA ATCATTCTTT 51326 .......... .......... .......... .......... .......... .......... 259 ATATAATATT ATGTCGAACA ATCAGTGTAG CGCATTTGAT ACACGTTTTT AGTATAAAAG 51266 .......... .......... .......... .......... .......... .......... 259 TTGGTGTTAT GGATCGGAGA TGACCTAAAG GTCCACAACA CTGTGACGTG GCGAGCCACT 51206 .......... .......... .......... .......... .......... .......... 259 CCATGACAAG AAAAAGTCCA CAGTTACAAT AACTTATCAC ATGAACATCA CTATCTTTAG 51146 .......... .......... .......... .......... .......... .......... 259 CCTAACTCAA TTAGGCCCAC AACATAACCC TACACCAACT AAAAGGACTT GCTGACAAAA 51086 .......... .......... .......... .......... .......... .......... 259 CCAGACATGC CACATGCTAT AGCATGAACA ATATTTTTGC CTAACTTACC AAAAAGTAAG 51026 .......... .......... .......... .......... .......... .......... 259 ACCCACTTGT CTTGCAAGAT TTCAACTTTT TACATACATT AAACAGTACA ATGAACTTTT 50966 .......... .......... .......... .......... .......... .......... 259 ACCCTACTAG AGTAATTTAA CATGTTATAG CAAGTTGGTT GTTTAATACC CTCCGTTCAC 50906 .......... .......... .......... .......... .......... .......... 259 TTTTACTTGT CATAAAATCA CTTTTCACTT CTCGTCAAAC TATGTATGGT AACAAGTTGG 50846 .......... .......... .......... .......... .......... .......... 259 CCCTACGGTC ATTTTTACTT GTCACTTTTC ACTTCTCATC AGACAATGTA GGGTAACAAG 50786 .......... .......... .......... .......... .......... .......... 259 TTGGCCCTAC GATCATTTTT ACTTGTCACG CTTCACTTAT CGTCAAACTA TGTAATGTAA 50726 .......... .......... .......... .......... .......... .......... 259 AGTCACATAT ATCATTGATA AATTTTCAGA AACTACTTCC AAAATTTCTG GTTAGACTCT 50666 .......... .......... .......... .......... .......... .......... 259 AGCTTAGAAT TAACATGTAA ATATCCATGA TAAGCAAACT TGATATCACA AAGAAGAAAT 50606 .......... .......... .......... .......... .......... .......... 259 AAAACTACAA GAGGAAAACA CTTACAGGAA CATGTGAGTC TCTGGCATTT CTCTTGGCAT 50546 .......... .......... .......... .......... .......... .......... 259 CAGTGGCTGA AAAAACAGTG TAAACAAGGA CAAAGGTGCC AATAATTTCA GCACCAAGGC 50486 .......... .......... .......... .......... .......... .......... 259 CATCACCCTT GGTGTATCCA GGGTTAACAA CATTAGCACC ACCACCAAGT CTTTGGTATG 50426 .......... .......... .......... .......... .......... .......... 259 GTCCTACCAT GAAGCCCTTC ACAACACCAG CACCACAGAT TGCACCAAGG CACTGCATCA 50366 .......... .......... .......... .......... .......... .......... 259 CCATGTAGAA AACAGCCCTG GTCAAGGACA ATTTCCTTGC CAAGAAAAGA CCAAAGGTCA 50306 .......... .......... .......... .......... .......... .......... 259 CAGCTGGGTT GATGTGTCCT CCTGTTTGAT ATCAAAACAC AGAATTTAGC ATCAGAGAAA 50246 .......... .......... .......... .......... .......... .......... 259 CAAGCCAACC CTTATTCAAA GAAGGAAAAG ACTCATTTTA CAAAATATGT AACATGCTTT 50186 .......... .......... .......... .......... .......... .......... 259 GAACTTCAAA ACAGGAAAAA ACTATACCCT TATGTGAATT ATACTCAAGA TCCCATTAAT 50126 .......... .......... .......... .......... .......... .......... 259 TAGTTGAAAA AGGTATGATG GTACAAATAA AGTAACTAAA AGCTCAAATA TGGTGATCAA 50066 .......... .......... .......... .......... .......... .......... 259 AAGCAAGCAA ACAAAGAAAT AAGCCACAAA GTGTTACACT TGCTATATAA AAAGGGTAAA 50006 .......... .......... .......... .......... .......... .......... 259 GTAACAAGAT TCAGAAAATA AACCATTTAC ATGTTTTGAA CCTCCAAGAC AAAGAAAGGT 49946 .......... .......... .......... .......... .......... .......... 259 TGAATCTTCA AGGATCCATC AAATTAGTTG TAAAAAGTAT GAGATACAAA ATTAGTGAAC 49886 .......... .......... .......... .......... .......... .......... 259 GAAGGAAAAT AAAGAGAAGT CATATTTTTA CAGTATAGAG GTAAAGGAAT AAGCTTCACC 49826 .......... .......... .......... .......... .......... .......... 259 AAACTCCATT TTTGTACCTC AGACACAGAA ATCAAACCAG TAACATGTTT TGGACCTTTA 49766 .......... .......... .......... .......... .......... .......... 259 AAAACAGTGA AAAATGAATC TTTAATTGAC TATACTCAAG ATCAAGAATC CATTAAATTA 49706 .......... .......... .......... .......... .......... .......... 259 GTCGACAAAT ATACACAATA AGTGAACACA AGCTCAACTA TCTTAAGCAA AAGAAGGGAA 49646 .......... .......... .......... .......... .......... .......... 259 TCAACTCAAA GAAATCAAGA AACATAAAAC AAACCAGTTA ACATGTTTCA AACCTCTAAA 49586 .......... .......... .......... .......... .......... .......... 259 CCAGTAAAAA TAAAACAAAT CTTTACCTTC TACATACTCA GCAATCCACA AAACCAGTTG 49526 ||||| || | | |||| .......... .......... .......... .......... .CAATCAGCA AGA-AAGTTT 277 ACAAAAGCAA TCAGTAGACA ATAAATGAAC ACAAACTCAC TCTTTAAGTA AAACAAGTAA 49466 | |||| | | ATTAAAGTTG TTA....... .......... .......... .......... .......... 290 AGTTACAATC TTTAGCATCA AGAATGAAAA GGGGGGCAAT GAAACCAACC TGAGATACCA 49406 .......... .......... .......... .......... .......... .......... 290 GCAGTACAGT AGACCAAAGC AAAGATCATA CCACCAAAAG CCCAAGCAAC CCCTTGAATA 49346 .......... .......... .......... .......... .......... .......... 290 CCCACTGAAG AACATAAACT ATCAGATCTC TTAAGACCCA TAACAGTCAA GATTGTGATA 49286 .......... .......... .......... .......... .......... .......... 290 TACAAGAACA AGAAAGTTGC CATGAACTCT GCAATACCAG CCCTGTAAAA GGACCATGAT 49226 .......... .......... .......... .......... .......... .......... 290 GACAACTCCC CTGGTTCAAA CAATGGAGCT GGTGGTGGCT CTTTGTAATC TTTGTCTGTT 49166 .......... .......... .......... .......... .......... .......... 290 TGAGCTGCTG TACCTAATGG TTGAGTTTCC CTAAACTTGT TAGCTCCAAG CTTAACATCT 49106 .......... .......... .......... .......... .......... .......... 290 TCTTCCTTGT TTTCTGCCAT TTTTTCACAA AGATTGAAGC TTTTTTCTTC TTCTTTTTTT 49046 .......... .......... .......... .......... .......... .......... 290 TTTTTTTGCT TTCTTTGTGC TGAGTGGTCA GTGCAAGAAC CAAATTTGAT ACTGAGAATA 48986 .......... .......... .......... .......... .......... .......... 290 GATATGGCTG TGGTTGTTTT ATAGTGGAGA AATCATTTTT TTATAATACA AATAAATTAA 48926 .......... .......... .......... .......... .......... .......... 290 ACTAAAATGT GGGGATAAAC TTATTAAATT GGTCCGATTA ATTATTGTGT TGGTCTACTC 48866 .......... .......... .......... .......... .......... .......... 290 TTTTTGTTTT TTCCTTCGGA TAATAACAAT AATTATATTC AATGTATTTT CACATAAAAT 48806 .......... .......... .......... .......... .......... .......... 290 CGATATTTAA TACAAGATAC AGTAAAAGTA AATTTTCAAT TCTGTTTCGA AGAAATAGAA 48746 .......... .......... .......... .......... .......... .......... 290 GTTATTTATA ATAGACTCTT AATTTAAAAG AAAAAACATT TTAAACTTTA GTCTATAGAA 48686 .......... .......... .......... .......... .......... .......... 290 GATAAAAGAA TATAATTACA GATTATTTTC GATAGAACTC TATTTAAAAA GAGCTAGAAA 48626 .......... .......... .......... .......... .......... .......... 290 TTATAATAGG AACCGAATCT TTGTTAATAA AGTAAAAAAT TTAAGCAGTC AATTAAATTT 48566 .......... .......... .......... .......... .......... .......... 290 TTAAGATTTT TGTAAAATAC TATTTGAAAC AATTCAGATA AAGAAGTAAC GGATATATAA 48506 | | || || | | || || | .......... .......... .......... .......AAA AAAAAAGTGC AGGTA-ATCA 312 AATGTAACAA A 48495 |||| ||||| | AATG-AACAA A 322 hqPGS_C08SLe0084H03.1-_SGN-E266732+ (52165 51926) ******************************************************************************** EST sequence 168 +strand 215 n (File: SGN-E224037+) 1 TTTTTTTTTT TTTTTTTGGA TAAGGTACAT AACATTATCA TAACCTGATA ATTTACACAC 61 ATAATAGAAC ATCTTAACAG AAGGAACAGA TCCACATTAC AAATACATAG AAGGAGAAAC 121 TTGAACATTC AACCCCCCAA AAAATGAAGA CAAAAGTACA CTGTTGTGTT TTTGAGAATC 181 CCATTGATTA AAGACAGATA ACTTAAGACC TGTGG Predicted gene structure (within gDNA segment 53045 to 51342): Exon 1 52142 51952 ( 191 n); cDNA 25 215 ( 191 n); score: 0.969 PPA cDNA 17 1 MATCH C08SLe0084H03.1- SGN-E224037+ 0.969 191 0.888 C PGS_C08SLe0084H03.1-_SGN-E224037+ (52142 51952) Alignment (genomic DNA sequence = upper lines): GTACATTACA TTATCATAAC CTGATAATTT ACACACATAA TAGAACATCT TAACAGAAGG 52083 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACATAACA TTATCATAAC CTGATAATTT ACACACATAA TAGAACATCT TAACAGAAGG 84 AACAGATCCA CATTACAAAT ACATTGAAGG AGAAACTTGA ACATTCAACC CCCCAAAAAA 52023 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AACAGATCCA CATTACAAAT ACATAGAAGG AGAAACTTGA ACATTCAACC CCCCAAAAAA 144 AGAAGACAAA AGTACACTGT TGAGTCTTTG AGAATCCCAT TGTTTAAAGA CAGATAACTT 51963 ||||||||| |||||||||| || || |||| |||||||||| || ||||||| |||||||||| TGAAGACAAA AGTACACTGT TGTGTTTTTG AGAATCCCAT TGATTAAAGA CAGATAACTT 204 AAGACCTGTG G 51952 |||||||||| | AAGACCTGTG G 215 hqPGS_C08SLe0084H03.1-_SGN-E224037+ (52142 51952) ******************************************************************************** EST sequence 102 -strand 192 n (File: SGN-E303694-) 1 TTTTTTTTTT TTTTTTTTCA AAGATAAAAA TAAAGAACCT TCATTGATAA GGTACATTAC 61 ATTATCATAA CCTGATAATT TACACACATA ATAGAACATC TTAACAGAAG GAACAGATCC 121 ACATTACAAA TACATTGAAG GAGAAACTTG AACATTCAAC CCCCCAAAAA AAGAAGACAA 181 AAGTACACTG TT Predicted gene structure (within gDNA segment 52947 to 51402): Exon 1 52293 52278 ( 16 n); cDNA 1 16 ( 16 n); score: 0.625 Intron 1 52277 52178 ( 100 n); Pd: 0.814 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 52177 52002 ( 176 n); cDNA 17 192 ( 176 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E303694- 1.000 192 1.000 C PGS_C08SLe0084H03.1-_SGN-E303694- (52293 52278,52177 52002) Alignment (genomic DNA sequence = upper lines): TTCTCCATTT TAATTTGTTT GTCTTTTTTT TCTTTCTAGT CCGTCTCTAA AAGTACAATC 52234 || | ||| | ||| TTTTTTTTTT TTTTTT.... .......... .......... .......... .......... 16 AGTTTGTTTC TCAACTCCGT ATCAAGTCAA AACTAGAAAA ACAAATTGAG ACGCGGTTCA 52174 |||| .......... .......... .......... .......... .......... ......TTCA 20 AAGATAAAAA TAAAGAACCT TCATTGATAA GGTACATTAC ATTATCATAA CCTGATAATT 52114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATAAAAA TAAAGAACCT TCATTGATAA GGTACATTAC ATTATCATAA CCTGATAATT 80 TACACACATA ATAGAACATC TTAACAGAAG GAACAGATCC ACATTACAAA TACATTGAAG 52054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACACATA ATAGAACATC TTAACAGAAG GAACAGATCC ACATTACAAA TACATTGAAG 140 GAGAAACTTG AACATTCAAC CCCCCAAAAA AAGAAGACAA AAGTACACTG TT 52002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGAAACTTG AACATTCAAC CCCCCAAAAA AAGAAGACAA AAGTACACTG TT 192 hqPGS_C08SLe0084H03.1-_SGN-E303694- (52177 52002) ******************************************************************************** EST sequence 167 +strand 202 n (File: SGN-E218929+) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTC AAAAGATAAA AATAAAGAAC 61 CTTCATTGAT AGGGTCCATT ACATTATCAT AACCTGATAT TTTACACACA TAATAGAACA 121 TTTTAACAGA GGGAACAGTT CCACATTACA AATCCATGGA AGGAGAAACT TGAACATTCA 181 ACCCCCCAAA AAAAGAAGAC AA Predicted gene structure (within gDNA segment 53184 to 51404): Exon 1 52170 52014 ( 157 n); cDNA 46 202 ( 157 n); score: 0.949 PPA cDNA 39 1 MATCH C08SLe0084H03.1- SGN-E218929+ 0.949 157 0.777 C PGS_C08SLe0084H03.1-_SGN-E218929+ (52170 52014) Alignment (genomic DNA sequence = upper lines): ATAAAAATAA AGAACCTTCA TTGATAAGGT ACATTACATT ATCATAACCT GATAATTTAC 52111 |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| |||| ||||| ATAAAAATAA AGAACCTTCA TTGATAGGGT CCATTACATT ATCATAACCT GATATTTTAC 105 ACACATAATA GAACATCTTA ACAGAAGGAA CAGATCCACA TTACAAATAC ATTGAAGGAG 52051 |||||||||| |||||| ||| ||||| |||| ||| |||||| |||||||| | || ||||||| ACACATAATA GAACATTTTA ACAGAGGGAA CAGTTCCACA TTACAAATCC ATGGAAGGAG 165 AAACTTGAAC ATTCAACCCC CCAAAAAAAG AAGACAA 52014 |||||||||| |||||||||| |||||||||| ||||||| AAACTTGAAC ATTCAACCCC CCAAAAAAAG AAGACAA 202 hqPGS_C08SLe0084H03.1-_SGN-E218929+ (52170 52014) ******************************************************************************** EST sequence 44 +strand 682 n (File: SGN-E328039+) 1 AAAAAACTAT CACACTGTTG TTTTTTGATC TACAAATTAA TTATGTGGTT ATTTGGATTA 61 AAAGGTGCCT CTGGTTTCTC TGCTTCATCT ACAGCTGAAG AAGTTACTCA AGGAATTGAT 121 GCTAATGGAC TCACTGCCAT TGTTACAGGA GCATCTAGTG GTATTGGTGC AGAAACAACG 181 CGTGTTCTTG CAATGCGAGG TGCGCATGTA GTAATGGCAG TTCGTAATGT TAAAAGTGGC 241 GAAGAAGTTA AGGATAGTAT TCTTAAAGAG ATTCCTCATG CCAAAATTGA TGTAATGGAG 301 ATGGATCTCG GTTCTATGGA ATCCGTTAGG AAGTTTGCAT CGGAATATAA CTCTACTGGT 361 TATCCTCTGA ACATTCTAAT CAACAATGCA GGGGTTATGG CTCCACCGTT CATGCTTTCT 421 CAAGACAATA TTGAATTACA GTTTGCTACT AATCATTTAG GTCATTTTCT TTTGACAAAT 481 CTTTTGCTAC AGAACCTGAA AAATACAGCT CAAGCGAGCC ATAGAGAAGG AAGGATTGTT 541 AACGTTTCAT CATTGGGACA TCGATTTACA TATCGTGAAG GGATCCGTTT TGACAAATCA 601 ATGACAAAGA TAGTTACACT GCAATACTTG CTTATGGACA GTCAAAGCTT GCTAATATCT 661 TACACGCTAA CGAACTTGCA AG Predicted gene structure (within gDNA segment 52553 to 55887): Exon 1 53153 53300 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 53301 53720 ( 420 n); Pd: 1.000 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 53721 53952 ( 232 n); cDNA 149 380 ( 232 n); score: 1.000 Intron 2 53953 54126 ( 174 n); Pd: 0.960 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 54127 54206 ( 80 n); cDNA 381 460 ( 80 n); score: 1.000 Intron 3 54207 54908 ( 702 n); Pd: 0.000 (s: 1.00), Pa: 0.959 (s: 1.00) Exon 4 54909 55062 ( 154 n); cDNA 461 613 ( 153 n); score: 0.987 Intron 4 55063 55208 ( 146 n); Pd: 0.941 (s: 0.98), Pa: 0.981 (s: 1.00) Exon 5 55209 55277 ( 69 n); cDNA 614 682 ( 69 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E328039+ 0.997 683 1.001 C PGS_C08SLe0084H03.1+_SGN-E328039+ (53153 53300,53721 53952,54127 54206,54909 55062,55209 55277) Alignment (genomic DNA sequence = upper lines): AAAAAACTAT CACACTGTTG TTTTTTGATC TACAAATTAA TTATGTGGTT ATTTGGATTA 53212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAACTAT CACACTGTTG TTTTTTGATC TACAAATTAA TTATGTGGTT ATTTGGATTA 60 AAAGGTGCCT CTGGTTTCTC TGCTTCATCT ACAGCTGAAG AAGTTACTCA AGGAATTGAT 53272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTGCCT CTGGTTTCTC TGCTTCATCT ACAGCTGAAG AAGTTACTCA AGGAATTGAT 120 GCTAATGGAC TCACTGCCAT TGTTACAGGT ATAAACTCTT TTTTTTTTTT AAATTATGTT 53332 |||||||||| |||||||||| |||||||| GCTAATGGAC TCACTGCCAT TGTTACAG.. .......... .......... .......... 148 TAGTAACCCT TTCTCCCAAT TTTTTCACTG AGTTGTTTGT AATTTTTTGG GGTGGGGGTT 53392 .......... .......... .......... .......... .......... .......... 148 ATTTATTCCT GTTTATAATT AATTATAGAT ATTATGGACA AAATGTTTTT GACCAAAATA 53452 .......... .......... .......... .......... .......... .......... 148 CACTAAAAAT ATGAGTTTTT GGGAAGTTTC ATACTATTAA TTATTAGTCG TTAGTACTTT 53512 .......... .......... .......... .......... .......... .......... 148 TTTCTAGCTG ATATATCATA ATTCATAGTG TAAGTATTAA AAAATACATC TAGTTGAATA 53572 .......... .......... .......... .......... .......... .......... 148 GATGGCGATA GTTCAGGTAG GAAAAGCGAA CAATTGATAT TTGGCCTTTA GTGTGTTTAA 53632 .......... .......... .......... .......... .......... .......... 148 TTGATAGAAT TGGGAATGTG AAACTTGTGA AAAAGTGATG AAATGTTTTT ACTTGAAATT 53692 .......... .......... .......... .......... .......... .......... 148 CTCATGTACA TGTTGATTAA ATTACCAGGA GCATCTAGTG GTATTGGTGC AGAAACAACG 53752 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA GCATCTAGTG GTATTGGTGC AGAAACAACG 180 CGTGTTCTTG CAATGCGAGG TGCGCATGTA GTAATGGCAG TTCGTAATGT TAAAAGTGGC 53812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGTTCTTG CAATGCGAGG TGCGCATGTA GTAATGGCAG TTCGTAATGT TAAAAGTGGC 240 GAAGAAGTTA AGGATAGTAT TCTTAAAGAG ATTCCTCATG CCAAAATTGA TGTAATGGAG 53872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGTTA AGGATAGTAT TCTTAAAGAG ATTCCTCATG CCAAAATTGA TGTAATGGAG 300 ATGGATCTCG GTTCTATGGA ATCCGTTAGG AAGTTTGCAT CGGAATATAA CTCTACTGGT 53932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATCTCG GTTCTATGGA ATCCGTTAGG AAGTTTGCAT CGGAATATAA CTCTACTGGT 360 TATCCTCTGA ACATTCTAAT GTAAGAAAAC ATTTCCTTTC AACTGTTTCA TGAGTTCAAT 53992 |||||||||| |||||||||| TATCCTCTGA ACATTCTAAT .......... .......... .......... .......... 380 ACAGAGTCGT AATTAGATTT TTGCATTCAT CTTTGGTTCA TTGGTATTGC TCGGAACAAA 54052 .......... .......... .......... .......... .......... .......... 380 TGTCCTGTTT ACTCTGCCCT CCGCGTCAAT GTGTGAATAT TAAGATACTA AATGAATTTT 54112 .......... .......... .......... .......... .......... .......... 380 TTTATTTTTT GAAGCAACAA TGCAGGGGTT ATGGCTCCAC CGTTCATGCT TTCTCAAGAC 54172 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CAACAA TGCAGGGGTT ATGGCTCCAC CGTTCATGCT TTCTCAAGAC 426 AATATTGAAT TACAGTTTGC TACTAATCAT TTAGGTAAAC GAGGTTATTT TTTGTGTTTG 54232 |||||||||| |||||||||| |||||||||| |||| AATATTGAAT TACAGTTTGC TACTAATCAT TTAG...... .......... .......... 460 TTTAAGATAT CGTAGTTATG GGGGAGTGTT CACATCCTTC ATCAAGAATT TTCACCACAC 54292 .......... .......... .......... .......... .......... .......... 460 TTGGCCATTC TTTGACATTG TAGAATACGA GGACTCACCT CTCTTGGAAT TTGGCATTTT 54352 .......... .......... .......... .......... .......... .......... 460 ATAACTTTGT TTTGCTATTA CTCTATGAAA ACGGTATAAT GTTACAGAGG TATATTTGCT 54412 .......... .......... .......... .......... .......... .......... 460 TGTAGAAGAT CTTTACATCA ATCTTTACCT GTTTCTGTTT TAGAGTCCAC TTGTTTTCTG 54472 .......... .......... .......... .......... .......... .......... 460 TCCTTTATCT TGAAAAAATG TGTTTTTCCT CTTATTTGCT GTAACTTGTC CATTGGTTTT 54532 .......... .......... .......... .......... .......... .......... 460 CAAGAAGCCA TAAGCTGGAC TTGCAAACTG TGTGATCTAG ATGTTATGTT GTAATCTAAG 54592 .......... .......... .......... .......... .......... .......... 460 ATGCTTGGAG TCTCCAAAAA TGCTGCTGCA CCTGTGCCGT ATACTCCAAA AATATACAAC 54652 .......... .......... .......... .......... .......... .......... 460 TTTTGGAAGA TCCGGCTCAT AGCAGTCAGG ATTTATGAAG ATTCCGAGCA CCATAGGTTG 54712 .......... .......... .......... .......... .......... .......... 460 AAATAGATGG TTGTATCTTA AATCCTCATT TGATGTCAAA ACTGAAGTGC AACTACAAGT 54772 .......... .......... .......... .......... .......... .......... 460 ACCAAGTCAG CTAAGTCTGA TCTCGACAGT TGTCTGTGTT TTCCTCTATT GAGATTGTTC 54832 .......... .......... .......... .......... .......... .......... 460 TGCTCTAATA GGATGGTTTT AGATTAAAGT ATTACTTGCT TTCACCAATA TAAGAAGACT 54892 .......... .......... .......... .......... .......... .......... 460 AGTAATGTTT TTGCAGGTCA TTTTCTTTTG ACAAATCTTT TGCTACAGAA CCTGAAAAAT 54952 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTCA TTTTCTTTTG ACAAATCTTT TGCTACAGAA CCTGAAAAAT 504 ACAGCTCAAG CGAGCCATAA AGAAGGAAGG ATTGTTAACG TTTCATCATT GGGACATCGA 55012 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCTCAAG CGAGCCATAG AGAAGGAAGG ATTGTTAACG TTTCATCATT GGGACATCGA 564 TTTACATATC GTGAAGGGAT CCGTTTTGAC AAAATCAATG ACAAAGATAG GTATTTCATG 55072 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTTACATATC GTGAAGGGAT CCGTTTTGAC -AAATCAATG ACAAAGATAG .......... 613 GGTGCCATCT TCATATACTT ACTCATCTTC AATGTATATC TCAGTTGTTA TATTTACACA 55132 .......... .......... .......... .......... .......... .......... 613 TTATTTTCAG GATCTGGCAG TAGGTTCTTT CTTTGCATAA GAGGTTTGAC AGTACTGTTT 55192 .......... .......... .......... .......... .......... .......... 613 ATTTGTGTAT TTCCAGTTAC ACTGCAATAC TTGCTTATGG ACAGTCAAAG CTTGCTAATA 55252 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TTAC ACTGCAATAC TTGCTTATGG ACAGTCAAAG CTTGCTAATA 657 TCTTACACGC TAACGAACTT GCAAG 55277 |||||||||| |||||||||| ||||| TCTTACACGC TAACGAACTT GCAAG 682 hqPGS_C08SLe0084H03.1+_SGN-E328039+ (53153 53300,53721 53952,54127 54206,54909 55062,55209 55277) ******************************************************************************** EST sequence 21 +strand 679 n (File: SGN-E326678+) 1 AAAAAACTAT CACACTGTTG TTTTTTGATC TACAAATTAA TTATGTGGTT ATTTGGATTA 61 AAAGGTGCCT CTGGTTTCTC TGCTTCATCT ACAGCTGAAG AAGTTACTCA AGGAATTGAT 121 GCTAATGGAC TCACTGCCAT TGTTACAGGA GCATCTAGTG GTATTGGTGC AGAAACAACG 181 CGTGTTCTTG CAATGCGAGG TGCGCATGTA GTAATGGCAG TTCGTAATGT TAAAAGTGGC 241 GAAGAAGTTA AGGATAGTAT TCTTAAAGAG ATTCCTCATG CCAAAATTGA TGTAATGGAG 301 ATGGATCTCG GTTCTATGGA ATCCGTTAGG AAGTTTGCAT CGGAATATAA CTCTACTGGT 361 TATCCTCTGA ACATTCTAAT CAACAATGCA GGGGTTATGG CTCCACCGTT CATGCTTTCT 421 CAAGACAATA TTGAATTACA GTTTGCTACT AATCATTTAG GTCATTTTCT TTTGACAAAT 481 CTTTTGCTAC AGAACCTGAA AAATACAGCT CAAGCGAGCC ATAAAGAAGG GAAGGATTGT 541 TACGTTTCAT CATTGGGACA TCGATTTACA TATCGTGGAG GGATCCGTTT TGACAAATCA 601 ATGGACAAGA TAGTTACACT GCAATACTTG CTTATGGACA GTCAAAGCTT GCTAATATCT 661 TACACGCTAA CGAACTTGC Predicted gene structure (within gDNA segment 52553 to 55884): Exon 1 53153 53300 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 53301 53720 ( 420 n); Pd: 1.000 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 53721 53952 ( 232 n); cDNA 149 380 ( 232 n); score: 1.000 Intron 2 53953 54126 ( 174 n); Pd: 0.960 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 54127 54206 ( 80 n); cDNA 381 460 ( 80 n); score: 1.000 Intron 3 54207 54908 ( 702 n); Pd: 0.000 (s: 1.00), Pa: 0.959 (s: 1.00) Exon 4 54909 55062 ( 154 n); cDNA 461 613 ( 153 n); score: 0.945 Intron 4 55063 55208 ( 146 n); Pd: 0.941 (s: 0.90), Pa: 0.981 (s: 1.00) Exon 5 55209 55274 ( 66 n); cDNA 614 679 ( 66 n); score: 1.000 MATCH C08SLe0084H03.1+ SGN-E326678+ 0.988 680 1.001 C PGS_C08SLe0084H03.1+_SGN-E326678+ (53153 53300,53721 53952,54127 54206,54909 55062,55209 55274) Alignment (genomic DNA sequence = upper lines): AAAAAACTAT CACACTGTTG TTTTTTGATC TACAAATTAA TTATGTGGTT ATTTGGATTA 53212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAACTAT CACACTGTTG TTTTTTGATC TACAAATTAA TTATGTGGTT ATTTGGATTA 60 AAAGGTGCCT CTGGTTTCTC TGCTTCATCT ACAGCTGAAG AAGTTACTCA AGGAATTGAT 53272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTGCCT CTGGTTTCTC TGCTTCATCT ACAGCTGAAG AAGTTACTCA AGGAATTGAT 120 GCTAATGGAC TCACTGCCAT TGTTACAGGT ATAAACTCTT TTTTTTTTTT AAATTATGTT 53332 |||||||||| |||||||||| |||||||| GCTAATGGAC TCACTGCCAT TGTTACAG.. .......... .......... .......... 148 TAGTAACCCT TTCTCCCAAT TTTTTCACTG AGTTGTTTGT AATTTTTTGG GGTGGGGGTT 53392 .......... .......... .......... .......... .......... .......... 148 ATTTATTCCT GTTTATAATT AATTATAGAT ATTATGGACA AAATGTTTTT GACCAAAATA 53452 .......... .......... .......... .......... .......... .......... 148 CACTAAAAAT ATGAGTTTTT GGGAAGTTTC ATACTATTAA TTATTAGTCG TTAGTACTTT 53512 .......... .......... .......... .......... .......... .......... 148 TTTCTAGCTG ATATATCATA ATTCATAGTG TAAGTATTAA AAAATACATC TAGTTGAATA 53572 .......... .......... .......... .......... .......... .......... 148 GATGGCGATA GTTCAGGTAG GAAAAGCGAA CAATTGATAT TTGGCCTTTA GTGTGTTTAA 53632 .......... .......... .......... .......... .......... .......... 148 TTGATAGAAT TGGGAATGTG AAACTTGTGA AAAAGTGATG AAATGTTTTT ACTTGAAATT 53692 .......... .......... .......... .......... .......... .......... 148 CTCATGTACA TGTTGATTAA ATTACCAGGA GCATCTAGTG GTATTGGTGC AGAAACAACG 53752 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA GCATCTAGTG GTATTGGTGC AGAAACAACG 180 CGTGTTCTTG CAATGCGAGG TGCGCATGTA GTAATGGCAG TTCGTAATGT TAAAAGTGGC 53812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGTTCTTG CAATGCGAGG TGCGCATGTA GTAATGGCAG TTCGTAATGT TAAAAGTGGC 240 GAAGAAGTTA AGGATAGTAT TCTTAAAGAG ATTCCTCATG CCAAAATTGA TGTAATGGAG 53872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGTTA AGGATAGTAT TCTTAAAGAG ATTCCTCATG CCAAAATTGA TGTAATGGAG 300 ATGGATCTCG GTTCTATGGA ATCCGTTAGG AAGTTTGCAT CGGAATATAA CTCTACTGGT 53932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATCTCG GTTCTATGGA ATCCGTTAGG AAGTTTGCAT CGGAATATAA CTCTACTGGT 360 TATCCTCTGA ACATTCTAAT GTAAGAAAAC ATTTCCTTTC AACTGTTTCA TGAGTTCAAT 53992 |||||||||| |||||||||| TATCCTCTGA ACATTCTAAT .......... .......... .......... .......... 380 ACAGAGTCGT AATTAGATTT TTGCATTCAT CTTTGGTTCA TTGGTATTGC TCGGAACAAA 54052 .......... .......... .......... .......... .......... .......... 380 TGTCCTGTTT ACTCTGCCCT CCGCGTCAAT GTGTGAATAT TAAGATACTA AATGAATTTT 54112 .......... .......... .......... .......... .......... .......... 380 TTTATTTTTT GAAGCAACAA TGCAGGGGTT ATGGCTCCAC CGTTCATGCT TTCTCAAGAC 54172 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CAACAA TGCAGGGGTT ATGGCTCCAC CGTTCATGCT TTCTCAAGAC 426 AATATTGAAT TACAGTTTGC TACTAATCAT TTAGGTAAAC GAGGTTATTT TTTGTGTTTG 54232 |||||||||| |||||||||| |||||||||| |||| AATATTGAAT TACAGTTTGC TACTAATCAT TTAG...... .......... .......... 460 TTTAAGATAT CGTAGTTATG GGGGAGTGTT CACATCCTTC ATCAAGAATT TTCACCACAC 54292 .......... .......... .......... .......... .......... .......... 460 TTGGCCATTC TTTGACATTG TAGAATACGA GGACTCACCT CTCTTGGAAT TTGGCATTTT 54352 .......... .......... .......... .......... .......... .......... 460 ATAACTTTGT TTTGCTATTA CTCTATGAAA ACGGTATAAT GTTACAGAGG TATATTTGCT 54412 .......... .......... .......... .......... .......... .......... 460 TGTAGAAGAT CTTTACATCA ATCTTTACCT GTTTCTGTTT TAGAGTCCAC TTGTTTTCTG 54472 .......... .......... .......... .......... .......... .......... 460 TCCTTTATCT TGAAAAAATG TGTTTTTCCT CTTATTTGCT GTAACTTGTC CATTGGTTTT 54532 .......... .......... .......... .......... .......... .......... 460 CAAGAAGCCA TAAGCTGGAC TTGCAAACTG TGTGATCTAG ATGTTATGTT GTAATCTAAG 54592 .......... .......... .......... .......... .......... .......... 460 ATGCTTGGAG TCTCCAAAAA TGCTGCTGCA CCTGTGCCGT ATACTCCAAA AATATACAAC 54652 .......... .......... .......... .......... .......... .......... 460 TTTTGGAAGA TCCGGCTCAT AGCAGTCAGG ATTTATGAAG ATTCCGAGCA CCATAGGTTG 54712 .......... .......... .......... .......... .......... .......... 460 AAATAGATGG TTGTATCTTA AATCCTCATT TGATGTCAAA ACTGAAGTGC AACTACAAGT 54772 .......... .......... .......... .......... .......... .......... 460 ACCAAGTCAG CTAAGTCTGA TCTCGACAGT TGTCTGTGTT TTCCTCTATT GAGATTGTTC 54832 .......... .......... .......... .......... .......... .......... 460 TGCTCTAATA GGATGGTTTT AGATTAAAGT ATTACTTGCT TTCACCAATA TAAGAAGACT 54892 .......... .......... .......... .......... .......... .......... 460 AGTAATGTTT TTGCAGGTCA TTTTCTTTTG ACAAATCTTT TGCTACAGAA CCTGAAAAAT 54952 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTCA TTTTCTTTTG ACAAATCTTT TGCTACAGAA CCTGAAAAAT 504 ACAGCTCAAG CGAGCCATAA AGAA-GGAAG GATTGTTAAC GTTTCATCAT TGGGACATCG 55011 |||||||||| |||||||||| |||| ||||| ||||||| || |||||||||| |||||||||| ACAGCTCAAG CGAGCCATAA AGAAGGGAAG GATTGTT-AC GTTTCATCAT TGGGACATCG 563 ATTTACATAT CGTGAAGGGA TCCGTTTTGA CAAAATCAAT GACAAAGATA GGTATTTCAT 55071 |||||||||| |||| ||||| |||||||||| | |||||||| | |||||| | ATTTACATAT CGTGGAGGGA TCCGTTTTGA C-AAATCAAT GGACAAGATA G......... 613 GGGTGCCATC TTCATATACT TACTCATCTT CAATGTATAT CTCAGTTGTT ATATTTACAC 55131 .......... .......... .......... .......... .......... .......... 613 ATTATTTTCA GGATCTGGCA GTAGGTTCTT TCTTTGCATA AGAGGTTTGA CAGTACTGTT 55191 .......... .......... .......... .......... .......... .......... 613 TATTTGTGTA TTTCCAGTTA CACTGCAATA CTTGCTTATG GACAGTCAAA GCTTGCTAAT 55251 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......TTA CACTGCAATA CTTGCTTATG GACAGTCAAA GCTTGCTAAT 656 ATCTTACACG CTAACGAACT TGC 55274 |||||||||| |||||||||| ||| ATCTTACACG CTAACGAACT TGC 679 hqPGS_C08SLe0084H03.1+_SGN-E326678+ (53153 53300,53721 53952,54127 54206,54909 55062,55209 55274) ******************************************************************************** EST sequence 64 +strand 502 n (File: SGN-E232072+) 1 GAGATAACTG CTAATTCACT TCACCCGGGA TCAATTACTA CCAATCTTCT CCGTCACCAA 61 AGTTTGGTTG AAGGCTTAGT TAACTGGATT GGCAAATACT TCATTAAAAA CATTCCACAG 121 GGAGCAGCAA CTACATGCTA TGTAGCTTTG CATCCTCAGG TGAAGGGAAT AACCGGTGAA 181 TACTTCTCGG ACAGCAATAT ATCTGCATCA ACTTCTCAGG GTACAGATGC AGAATTGGCA 241 AAGAAACTCT GGGATTTCAG CTTGAATTTG ACAAAACCTC AGTAAAAACA ATGTCAATTG 301 ATGTTTTATC TCAGTATGTG ATCATCGCGT AAACTCTTTT TTCTTTCCAA ATACTTTCCT 361 TGTAATGCAC ATCTCGACTG GTTTTTGGCT GGACAAATCT TGCTGGCTTG AAAACTTGAA 421 TTTCAATGAT AATGGTGACA TGTATTGTTG GTAATAAGCC TCATCAANNN AAAAAAAAAA 481 AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 54989 to 57472): Exon 1 55589 55661 ( 73 n); cDNA 1 73 ( 73 n); score: 1.000 Intron 1 55662 56045 ( 384 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 56046 56092 ( 47 n); cDNA 74 120 ( 47 n); score: 1.000 Intron 2 56093 56165 ( 73 n); Pd: 0.991 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 56166 56511 ( 346 n); cDNA 121 466 ( 346 n); score: 1.000 PPA cDNA 471 502 MATCH C08SLe0084H03.1+ SGN-E232072+ 1.000 466 0.928 C PGS_C08SLe0084H03.1+_SGN-E232072+ (55589 55661,56046 56092,56166 56511) Alignment (genomic DNA sequence = upper lines): GAGATAACTG CTAATTCACT TCACCCGGGA TCAATTACTA CCAATCTTCT CCGTCACCAA 55648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATAACTG CTAATTCACT TCACCCGGGA TCAATTACTA CCAATCTTCT CCGTCACCAA 60 AGTTTGGTTG AAGGTAAAAA TTTAAAATCT TCCACCAGAG TGGTTCTTAT TGTTGTAATG 55708 |||||||||| ||| AGTTTGGTTG AAG....... .......... .......... .......... .......... 73 ACATCTCATG AAATTTGTTT CCTTCAATGA GCTTTAAGTT TTTTATCCGA AGATTAGATT 55768 .......... .......... .......... .......... .......... .......... 73 TCCTTGAACT ACCCTTTATA GGTATATGAA ATGAACAAGA AATGAACGTT CTTTCACGAA 55828 .......... .......... .......... .......... .......... .......... 73 CGTTCATTGT ATTGATTGAT GAAGGATTTA GTACGTTAAA AACTTCGTTT TGGATATTAA 55888 .......... .......... .......... .......... .......... .......... 73 AATCCTTCTA GGGTGCCATA CACTATAACC GCGAGTAGTT ACACCATACA GGGCATATAC 55948 .......... .......... .......... .......... .......... .......... 73 AAAGTTTAGA GCCTCAACAT GATATGTGTT CTTTGAAGTC CTGTGATCTT GGCAAATTTC 56008 .......... .......... .......... .......... .......... .......... 73 ATGTTTGTTA ATTTTTTATA TTTTGGACCT TTTGCAGGCT TAGTTAACTG GATTGGCAAA 56068 ||| |||||||||| |||||||||| .......... .......... .......... .......GCT TAGTTAACTG GATTGGCAAA 96 TACTTCATTA AAAACATTCC ACAGGTGAGT AGCTTTGGTA CAAATATAAG ATCGATAAAT 56128 |||||||||| |||||||||| |||| TACTTCATTA AAAACATTCC ACAG...... .......... .......... .......... 120 GTTAGTTTCC TCATGTATGT TTCTGTGTTG ATTCCAGGGA GCAGCAACTA CATGCTATGT 56188 ||| |||||||||| |||||||||| .......... .......... .......... .......GGA GCAGCAACTA CATGCTATGT 143 AGCTTTGCAT CCTCAGGTGA AGGGAATAAC CGGTGAATAC TTCTCGGACA GCAATATATC 56248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTGCAT CCTCAGGTGA AGGGAATAAC CGGTGAATAC TTCTCGGACA GCAATATATC 203 TGCATCAACT TCTCAGGGTA CAGATGCAGA ATTGGCAAAG AAACTCTGGG ATTTCAGCTT 56308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATCAACT TCTCAGGGTA CAGATGCAGA ATTGGCAAAG AAACTCTGGG ATTTCAGCTT 263 GAATTTGACA AAACCTCAGT AAAAACAATG TCAATTGATG TTTTATCTCA GTATGTGATC 56368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTGACA AAACCTCAGT AAAAACAATG TCAATTGATG TTTTATCTCA GTATGTGATC 323 ATCGCGTAAA CTCTTTTTTC TTTCCAAATA CTTTCCTTGT AATGCACATC TCGACTGGTT 56428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCGTAAA CTCTTTTTTC TTTCCAAATA CTTTCCTTGT AATGCACATC TCGACTGGTT 383 TTTGGCTGGA CAAATCTTGC TGGCTTGAAA ACTTGAATTT CAATGATAAT GGTGACATGT 56488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGCTGGA CAAATCTTGC TGGCTTGAAA ACTTGAATTT CAATGATAAT GGTGACATGT 443 ATTGTTGGTA ATAAGCCTCA TCA 56511 |||||||||| |||||||||| ||| ATTGTTGGTA ATAAGCCTCA TCA 466 hqPGS_C08SLe0084H03.1+_SGN-E232072+ (55589 55661,56046 56092,56166 56511) ******************************************************************************** EST sequence 104 +strand 500 n (File: SGN-E377937+) 1 GAGATAACTG CTAATTCACT TCACCCGGGA TCAATTACTA CCAATCTTCT CCGTCACCAA 61 AGTTTGGTTG AAGGCTTAGT TAACTGGATT GGCAAATACT TCATTAAAAA CATTCCACAG 121 GGAGCAGCAA CTACATGCTA TGTAGCTTTG CATCCTCAGG TGAAGGGAAT AACCGGTGAA 181 TACTTCTCGG ACAGCAATAT ATCTGCATCA ACTTCTCAGG GTACAGATGC AGAATTGGCA 241 AAGAAACTCT GGGATTTCAG CTTGAATTTG ACAAAACCTC AGTAAAAACA ATGTCAATTG 301 ATGTTTTATC TCAGTATGTG ATCATCGCGT AAACTCTTTT TTCTTTCCAA ATACTTTCCT 361 TGTAATGCAC ATCTCGACTG GTTTTTGGCT GGACAAATCT TGCTGGCTTG AAAACTTGAA 421 TTTCAATGAT AATGGTGACA TGTATTGTTG GTAATAAGCC TCATCAAAAA AAAAAAAAAA 481 AAAAAAAAAA AAACTCGAGG Predicted gene structure (within gDNA segment 54989 to 57452): Exon 1 55589 55661 ( 73 n); cDNA 1 73 ( 73 n); score: 1.000 Intron 1 55662 56045 ( 384 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 56046 56092 ( 47 n); cDNA 74 120 ( 47 n); score: 1.000 Intron 2 56093 56165 ( 73 n); Pd: 0.991 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 56166 56511 ( 346 n); cDNA 121 466 ( 346 n); score: 1.000 PPA cDNA 467 494 MATCH C08SLe0084H03.1+ SGN-E377937+ 1.000 466 0.932 C PGS_C08SLe0084H03.1+_SGN-E377937+ (55589 55661,56046 56092,56166 56511) Alignment (genomic DNA sequence = upper lines): GAGATAACTG CTAATTCACT TCACCCGGGA TCAATTACTA CCAATCTTCT CCGTCACCAA 55648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATAACTG CTAATTCACT TCACCCGGGA TCAATTACTA CCAATCTTCT CCGTCACCAA 60 AGTTTGGTTG AAGGTAAAAA TTTAAAATCT TCCACCAGAG TGGTTCTTAT TGTTGTAATG 55708 |||||||||| ||| AGTTTGGTTG AAG....... .......... .......... .......... .......... 73 ACATCTCATG AAATTTGTTT CCTTCAATGA GCTTTAAGTT TTTTATCCGA AGATTAGATT 55768 .......... .......... .......... .......... .......... .......... 73 TCCTTGAACT ACCCTTTATA GGTATATGAA ATGAACAAGA AATGAACGTT CTTTCACGAA 55828 .......... .......... .......... .......... .......... .......... 73 CGTTCATTGT ATTGATTGAT GAAGGATTTA GTACGTTAAA AACTTCGTTT TGGATATTAA 55888 .......... .......... .......... .......... .......... .......... 73 AATCCTTCTA GGGTGCCATA CACTATAACC GCGAGTAGTT ACACCATACA GGGCATATAC 55948 .......... .......... .......... .......... .......... .......... 73 AAAGTTTAGA GCCTCAACAT GATATGTGTT CTTTGAAGTC CTGTGATCTT GGCAAATTTC 56008 .......... .......... .......... .......... .......... .......... 73 ATGTTTGTTA ATTTTTTATA TTTTGGACCT TTTGCAGGCT TAGTTAACTG GATTGGCAAA 56068 ||| |||||||||| |||||||||| .......... .......... .......... .......GCT TAGTTAACTG GATTGGCAAA 96 TACTTCATTA AAAACATTCC ACAGGTGAGT AGCTTTGGTA CAAATATAAG ATCGATAAAT 56128 |||||||||| |||||||||| |||| TACTTCATTA AAAACATTCC ACAG...... .......... .......... .......... 120 GTTAGTTTCC TCATGTATGT TTCTGTGTTG ATTCCAGGGA GCAGCAACTA CATGCTATGT 56188 ||| |||||||||| |||||||||| .......... .......... .......... .......GGA GCAGCAACTA CATGCTATGT 143 AGCTTTGCAT CCTCAGGTGA AGGGAATAAC CGGTGAATAC TTCTCGGACA GCAATATATC 56248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTGCAT CCTCAGGTGA AGGGAATAAC CGGTGAATAC TTCTCGGACA GCAATATATC 203 TGCATCAACT TCTCAGGGTA CAGATGCAGA ATTGGCAAAG AAACTCTGGG ATTTCAGCTT 56308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATCAACT TCTCAGGGTA CAGATGCAGA ATTGGCAAAG AAACTCTGGG ATTTCAGCTT 263 GAATTTGACA AAACCTCAGT AAAAACAATG TCAATTGATG TTTTATCTCA GTATGTGATC 56368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTGACA AAACCTCAGT AAAAACAATG TCAATTGATG TTTTATCTCA GTATGTGATC 323 ATCGCGTAAA CTCTTTTTTC TTTCCAAATA CTTTCCTTGT AATGCACATC TCGACTGGTT 56428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCGTAAA CTCTTTTTTC TTTCCAAATA CTTTCCTTGT AATGCACATC TCGACTGGTT 383 TTTGGCTGGA CAAATCTTGC TGGCTTGAAA ACTTGAATTT CAATGATAAT GGTGACATGT 56488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGCTGGA CAAATCTTGC TGGCTTGAAA ACTTGAATTT CAATGATAAT GGTGACATGT 443 ATTGTTGGTA ATAAGCCTCA TCA 56511 |||||||||| |||||||||| ||| ATTGTTGGTA ATAAGCCTCA TCA 466 hqPGS_C08SLe0084H03.1+_SGN-E377937+ (55589 55661,56046 56092,56166 56511) ******************************************************************************** EST sequence 88 -strand 529 n (File: SGN-E542913-) 1 GGTTATTAAA AATTCAAATG GTTGCAATCT TGCGGTAGAT ATATGGACCC TTGGATGCAC 61 AGTTTTGGAG ATGGCAACAA CAAAACCCCC TTGGAGTCAG TATGAAGGAG TCGCTGCTAT 121 TTTTAAGATT GGAAACAGCA AGGAAGTTCC AGCAATTCCC TATCCCCTGT CAGATGAGGG 181 CAAGGATTTT GTGGGGCAAT GTTTACAACG CAATCCACTC CCCCGTCCAA CAGTTTTTTA 241 GTTTTGGAAA CATCCCTTTG TCAAAAGTAC TGCTCCAATG GAAAGATTCA TTGGCATTGG 301 ACATTTAAAA GATCCCCCAT GTGTGGGCCC AGAAGAAGTT GCAGTGCATC ATGAGCCTAG 361 GGGTTCAATT TTTTTTCCGG GATTTAGGTT AGTTCATTTT TCTCCCCCCC AAAAGTTACC 421 GGTAATCTGA TCTTGGTCCA TCTTGCTATT ATTGAAGAAG CCAGATTTTT GCCGTTAAAA 481 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAGAAA Predicted gene structure (within gDNA segment 60629 to 57404): Exon 1 60019 59911 ( 109 n); cDNA 1 109 ( 109 n); score: 0.963 Intron 1 59910 59826 ( 85 n); Pd: 0.946 (s: 0.94), Pa: 1.000 (s: 1.00) Exon 2 59825 59643 ( 183 n); cDNA 110 292 ( 183 n); score: 0.940 Intron 2 59642 58754 ( 889 n); Pd: 0.259 (s: 0.96), Pa: 0.999 (s: 0.96) Exon 3 58753 58574 ( 180 n); cDNA 293 472 ( 180 n); score: 0.939 PPA cDNA 479 529 MATCH C08SLe0084H03.1- SGN-E542913- 0.945 472 0.892 C PGS_C08SLe0084H03.1-_SGN-E542913- (60019 59911,59825 59643,58753 58574) Alignment (genomic DNA sequence = upper lines): GGTTATTAAA AATTCAAATG GTTGCAATCT TGCGGTAGAT ATATGGAGCC TTGGATGCAC 59960 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GGTTATTAAA AATTCAAATG GTTGCAATCT TGCGGTAGAT ATATGGACCC TTGGATGCAC 60 GGTTTTGGAG ATGGCAACAA CAAAACCACC TTGGAGTCAG TATGAAGGGG TTAGTTAATA 59900 ||||||||| |||||||||| ||||||| || |||||||||| |||||||| AGTTTTGGAG ATGGCAACAA CAAAACCCCC TTGGAGTCAG TATGAAGGA. .......... 109 TGTTTATGAT GGTCCAAAAG TGTGCAGTTT CTGTATTTTC TTCGTGCTTC TAATTCCTAT 59840 .......... .......... .......... .......... .......... .......... 109 TGGTTTTCTC ATAGGTCGCT GCTATTTTTA AGATTGGAAA CAGCAAGGAA GTTCCAGCAA 59780 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTCGCT GCTATTTTTA AGATTGGAAA CAGCAAGGAA GTTCCAGCAA 155 TTCCCTATCA CCTGTCAGAT AAGGGCAAGG ATTTTGTGCG GCAATGTCTA CAACGCAATC 59720 ||||||||| |||||||||| ||||||||| |||||||| | ||||||| || |||||||||| TTCCCTATCC CCTGTCAGAT GAGGGCAAGG ATTTTGTGGG GCAATGTTTA CAACGCAATC 215 CACTCCACCG TCCAACAGCT TCTCAGCTCT TGAAACATCC CTTTGTCAAA AGTACTGCTC 59660 |||||| ||| |||||||| | | | || | | ||||||||| |||||||||| |||||||||| CACTCCCCCG TCCAACAGTT TTTTAGTTTT GGAAACATCC CTTTGTCAAA AGTACTGCTC 275 CAATGGAAAG ATTCATTGTA AGTCCTGAAC CTGTAGAAAC AATGTCTCCA TTGATGCTTG 59600 |||||||||| ||||||| CAATGGAAAG ATTCATT... .......... .......... .......... .......... 292 CAGTGATATC ATTGTATGTT TTCTTAGTTT GCTCATCTGG CAATGTTGCC CATTTTAGAC 59540 .......... .......... .......... .......... .......... .......... 292 AACTGTAAGT CTCATACCCA GTGTAATTTC ACAAGTGGAG TCTGGATTTA GGCAACTCAA 59480 .......... .......... .......... .......... .......... .......... 292 AGTATCACTT GCATTGCCTG ATTCCACGAT TTTGGTTTGT GTGAATTGAT TACTTTTCCA 59420 .......... .......... .......... .......... .......... .......... 292 TTAGGGATTC TGAGTCACCT TATCATTTCT TCTTGAACAT TCCCTCGTTT GATATTTATT 59360 .......... .......... .......... .......... .......... .......... 292 TTTTCTAGAG TTACTGTGCA GCTGACAAAC AAATTATAAT ACCTGTATTA GAAATTACTG 59300 .......... .......... .......... .......... .......... .......... 292 AACGTATTAC GATCAACTTT ACTACATTTG TATCCAAGAA AAGTAGATAG CTTTTGCAAT 59240 .......... .......... .......... .......... .......... .......... 292 CAAAGGCTTT ACAGGAACAG TGCATTCTGA AATGACATGG ACAGTTCTCC ATATCAGAAT 59180 .......... .......... .......... .......... .......... .......... 292 ATTTCTACTG AGTGAAGATA GTAAAAGCTA TAAAAACAGA CAAAATGTGC AAAATAAAAT 59120 .......... .......... .......... .......... .......... .......... 292 TCAGAAGGAT GGTCAACTTT TGAGGGTCCC ATAGCAGCTA AGCGCTTGCA AATGAATATT 59060 .......... .......... .......... .......... .......... .......... 292 TATTAGTCGC CTGGTGAGTT GGTTTGTTAA GATCTTGTCG GGGAATAGTA GATTTTTATT 59000 .......... .......... .......... .......... .......... .......... 292 TCTCGTAAAT GCAGTTGTGT GAAACCTCTA TGGTAATCTC TCCTTCAGCA TTACACATCT 58940 .......... .......... .......... .......... .......... .......... 292 TTTTCCTCAA ACTTGTTACT CTGTCTGGAG AACTCTTCAT AATATTGATG GACCAGTGAC 58880 .......... .......... .......... .......... .......... .......... 292 ATTATCTGCC ATCTTTAGGA CTCAGGAATG TTCTGCTTAC TGGATGCCAT GATTTAAATT 58820 .......... .......... .......... .......... .......... .......... 292 TAGCATATGT TCTCGTGATC ATTGCTTGAG TTTTTTCACG GTTTACTTCA TGTTTTGATA 58760 .......... .......... .......... .......... .......... .......... 292 TTTCAGGGCA TTGGACATTT AAAAGATCCA CCATGTGTGG GCTCAGAAGA AGTTGCAGTG 58700 |||| |||||||||| ||||||||| |||||||||| || ||||||| |||||||||| ......GGCA TTGGACATTT AAAAGATCCC CCATGTGTGG GCCCAGAAGA AGTTGCAGTG 346 CATCATGAGC CTAGAAGTTC AATTTTTTTT CCTGGATTTA GGTTAGTTCA TTTCTCTCTC 58640 |||||||||| |||| |||| |||||||||| || ||||||| |||||||||| ||| |||| | CATCATGAGC CTAGGGGTTC AATTTTTTTT CCGGGATTTA GGTTAGTTCA TTTTTCTCCC 406 ACACAATAGT TACCTGTAAT CTGATCTTGG TCCATCTTGC TATTATTGAA GAAGCCAGAT 58580 | ||| ||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCAAAAGT TACCGGTAAT CTGATCTTGG TCCATCTTGC TATTATTGAA GAAGCCAGAT 466 TTTTGC 58574 |||||| TTTTGC 472 hqPGS_C08SLe0084H03.1-_SGN-E542913- (60019 59911,59825 59643,58753 58574) ******************************************************************************** EST sequence 218 +strand 625 n (File: SGN-E542914+) 1 AGTGACCGGT GAAGTCTCCG AGCCATCATT GACTTTGCCT CTTCCCATGC CCAGGCATCT 61 TCCACATGGA CCAACTGCTG CAGGAGTTGA CAGGGACTTA CCAACTGCTT CTGTTTCTTG 121 TGACTGCTCC AGTGACAGTG ATGATCTTAC TGACTCACGA TTTCTAAGTC CCCAAACATC 181 TGATTATGAA AACGGGAGCA GAACTGCCTT GAATAGTCCT TCCAGTTTGA AGCAGAAGGT 241 TCAGTCCCCT ATTGCATCCA ATGCAAGCTC AGGAGAGATG CTGAAGTCAG CTACTCTTTT 301 GTCAGACAAT CAGGCGATCC CTACATCTCC TAGACAGAGG CTTTTAAGAT CTCATGTACC 361 ACCAGGCTTA CAGATTCCTC ATCATGGCGC TTCCTACAGT GCTCCTGACA GCTCGATGTC 421 AAGTCCTTCA AGAAGTCCCA TGAGGGTATT TGGGCATGAA ACGGTCATGA ACCCTGGTTT 481 CTGGCTAGGG AAGCCACATG GAGAGATAAC CTTCTTAGGA TCAGGGCACT GCTCTAGTCC 541 AGGTTCTGGC CAAAACTCTG GGCACAATTC AATTGGAGGT GATATGTTAG CGCAGCCCTT 601 TTTGGCACAC AGCAGGTGTA GTCCT Predicted gene structure (within gDNA segment 63777 to 61785): Exon 1 63177 62953 ( 225 n); cDNA 1 225 ( 225 n); score: 0.996 Intron 1 62952 62795 ( 158 n); Pd: 0.999 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 2 62794 62395 ( 400 n); cDNA 226 625 ( 400 n); score: 0.993 MATCH C08SLe0084H03.1- SGN-E542914+ 0.994 625 1.000 C PGS_C08SLe0084H03.1-_SGN-E542914+ (63177 62953,62794 62395) Alignment (genomic DNA sequence = upper lines): AGTGACCGGT GAAGTCTCCG AGCCATCATT GACTTTGCCT CTTCCCATGC CCAGGCATCT 63118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGACCGGT GAAGTCTCCG AGCCATCATT GACTTTGCCT CTTCCCATGC CCAGGCATCT 60 TCCACATGGA CCAACTGCTG CAGGAGTTGA CAGGGACTTA CCAACTGCTT CTGTTTCTTG 63058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACATGGA CCAACTGCTG CAGGAGTTGA CAGGGACTTA CCAACTGCTT CTGTTTCTTG 120 TGACAGCTCC AGTGACAGTG ATGATCTTAC TGACTCACGA TTTCTAAGTC CCCAAACATC 62998 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTGCTCC AGTGACAGTG ATGATCTTAC TGACTCACGA TTTCTAAGTC CCCAAACATC 180 TGATTATGAA AACGGGAGCA GAACTGCCTT GAATAGTCCT TCCAGGTAAG CACAAACTGT 62938 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGATTATGAA AACGGGAGCA GAACTGCCTT GAATAGTCCT TCCAG..... .......... 225 AACAATTGCT GTTCCATCTC GAATTTGATA TACAGCTGTG CTTAAAAGTA TCTCTTTTGA 62878 .......... .......... .......... .......... .......... .......... 225 CTTCTTTATC AAAAAAAAAA AAAATTCTTC ATCAAAAAGT ATCTCTTTTG AGCATTTCTA 62818 .......... .......... .......... .......... .......... .......... 225 ACAAATAAAT TCAATTTCTG CAGTTTGAAG CAGAAGGTTC AGTCCCCTAT TGCATCCAAT 62758 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...TTTGAAG CAGAAGGTTC AGTCCCCTAT TGCATCCAAT 262 GCAAGCTCAG GAGAGATGCT GAAGTCAGCT ACTCTTTTGT CAGACAATCA GGCGATCCCT 62698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGCTCAG GAGAGATGCT GAAGTCAGCT ACTCTTTTGT CAGACAATCA GGCGATCCCT 322 ACATCTCCTA GACAGAGGCT TTTAAGATCT CATGTACCAC CAGGCTTACA GATTCCTCAT 62638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCTCCTA GACAGAGGCT TTTAAGATCT CATGTACCAC CAGGCTTACA GATTCCTCAT 382 CATGGCGCTT CCTACAGTGC TCCTGACAGC TCGATGTCAA GTCCTTCAAG AAGTCCCATG 62578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGCGCTT CCTACAGTGC TCCTGACAGC TCGATGTCAA GTCCTTCAAG AAGTCCCATG 442 AGGGTATTTG GGCATGAAAC GGTCATGAAC CCTGGTTTCT GGCTAGGGAA GCCACATGGA 62518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTATTTG GGCATGAAAC GGTCATGAAC CCTGGTTTCT GGCTAGGGAA GCCACATGGA 502 GAGATAACCT TCTTAGGATC AGGGCACTGC TCCAGTCCAG GTTCTGGCCA AAACTCTGGG 62458 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GAGATAACCT TCTTAGGATC AGGGCACTGC TCTAGTCCAG GTTCTGGCCA AAACTCTGGG 562 CACAATTCAA TTGGAGGTGA TATGTTAGCG CAGCCCTTTT GGCCACACAG CAGGTGTAGT 62398 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| |||||||||| CACAATTCAA TTGGAGGTGA TATGTTAGCG CAGCCCTTTT TGGCACACAG CAGGTGTAGT 622 CCT 62395 ||| CCT 625 hqPGS_C08SLe0084H03.1-_SGN-E542914+ (63177 62953,62794 62395) ******************************************************************************** EST sequence 259 +strand 602 n (File: SGN-E302911+) 1 GTGACCGGTG AAGTCTCCGA GCCATCATTG ACTTTGCCTC TTCCCATGCC CAGGCATCTT 61 CCACATGGAC CAACTGCTGC AGGAGTTGAC AGGGACTTAC CAACTGCTTC TGTTTCTTGT 121 GACTGCTCCA GTGACAGTGA TGATCTTACT GACTCACGAT TTCTAAGTCC CCAAACATCT 181 GATTATGAAA ACGGGAGCAG AACTGCCTTG AATAGTCCTT CCAGTTTGAA GCAGAAGGTT 241 CAGTCCCCTA TTGCATCCAA TGCAAGCTCA GGAGAGATGC TGAAGTCAGC TACTCTTTTG 301 TCAGACAATC AGGCGATCCC TACATCTCCT AGACAGAGGC TTTTAAGATC TCATGTACCA 361 CCAGGCTTAC AGATTCCTCA TCATGGCGCT TCCTACAGTG CTCCTGACAG CTCGATGTCA 421 AGTCCTTCAA GAAGTCCCAT GAGGGTATTT GGGCATGAAA CGGTCATGAA CCCTGGTTTC 481 TGGCTAGGGA AGCCACATGG AGAGATAACC TTCTTAGGAT CAGGGCACTG CTCTAGTCCA 541 GGTTCTGGCC AAAACTCTGG GCACAATTCA ATTGGAGGTG ATATGTTAGC GCAGCCCTTT 601 TG Predicted gene structure (within gDNA segment 63776 to 61807): Exon 1 63176 62953 ( 224 n); cDNA 1 224 ( 224 n); score: 0.996 Intron 1 62952 62795 ( 158 n); Pd: 0.999 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 2 62794 62417 ( 378 n); cDNA 225 602 ( 378 n); score: 0.997 MATCH C08SLe0084H03.1- SGN-E302911+ 0.997 602 1.000 C PGS_C08SLe0084H03.1-_SGN-E302911+ (63176 62953,62794 62417) Alignment (genomic DNA sequence = upper lines): GTGACCGGTG AAGTCTCCGA GCCATCATTG ACTTTGCCTC TTCCCATGCC CAGGCATCTT 63117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCGGTG AAGTCTCCGA GCCATCATTG ACTTTGCCTC TTCCCATGCC CAGGCATCTT 60 CCACATGGAC CAACTGCTGC AGGAGTTGAC AGGGACTTAC CAACTGCTTC TGTTTCTTGT 63057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACATGGAC CAACTGCTGC AGGAGTTGAC AGGGACTTAC CAACTGCTTC TGTTTCTTGT 120 GACAGCTCCA GTGACAGTGA TGATCTTACT GACTCACGAT TTCTAAGTCC CCAAACATCT 62997 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTGCTCCA GTGACAGTGA TGATCTTACT GACTCACGAT TTCTAAGTCC CCAAACATCT 180 GATTATGAAA ACGGGAGCAG AACTGCCTTG AATAGTCCTT CCAGGTAAGC ACAAACTGTA 62937 |||||||||| |||||||||| |||||||||| |||||||||| |||| GATTATGAAA ACGGGAGCAG AACTGCCTTG AATAGTCCTT CCAG...... .......... 224 ACAATTGCTG TTCCATCTCG AATTTGATAT ACAGCTGTGC TTAAAAGTAT CTCTTTTGAC 62877 .......... .......... .......... .......... .......... .......... 224 TTCTTTATCA AAAAAAAAAA AAATTCTTCA TCAAAAAGTA TCTCTTTTGA GCATTTCTAA 62817 .......... .......... .......... .......... .......... .......... 224 CAAATAAATT CAATTTCTGC AGTTTGAAGC AGAAGGTTCA GTCCCCTATT GCATCCAATG 62757 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TTTGAAGC AGAAGGTTCA GTCCCCTATT GCATCCAATG 262 CAAGCTCAGG AGAGATGCTG AAGTCAGCTA CTCTTTTGTC AGACAATCAG GCGATCCCTA 62697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCTCAGG AGAGATGCTG AAGTCAGCTA CTCTTTTGTC AGACAATCAG GCGATCCCTA 322 CATCTCCTAG ACAGAGGCTT TTAAGATCTC ATGTACCACC AGGCTTACAG ATTCCTCATC 62637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTCCTAG ACAGAGGCTT TTAAGATCTC ATGTACCACC AGGCTTACAG ATTCCTCATC 382 ATGGCGCTTC CTACAGTGCT CCTGACAGCT CGATGTCAAG TCCTTCAAGA AGTCCCATGA 62577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCGCTTC CTACAGTGCT CCTGACAGCT CGATGTCAAG TCCTTCAAGA AGTCCCATGA 442 GGGTATTTGG GCATGAAACG GTCATGAACC CTGGTTTCTG GCTAGGGAAG CCACATGGAG 62517 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTATTTGG GCATGAAACG GTCATGAACC CTGGTTTCTG GCTAGGGAAG CCACATGGAG 502 AGATAACCTT CTTAGGATCA GGGCACTGCT CCAGTCCAGG TTCTGGCCAA AACTCTGGGC 62457 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AGATAACCTT CTTAGGATCA GGGCACTGCT CTAGTCCAGG TTCTGGCCAA AACTCTGGGC 562 ACAATTCAAT TGGAGGTGAT ATGTTAGCGC AGCCCTTTTG 62417 |||||||||| |||||||||| |||||||||| |||||||||| ACAATTCAAT TGGAGGTGAT ATGTTAGCGC AGCCCTTTTG 602 hqPGS_C08SLe0084H03.1-_SGN-E302911+ (63176 62953,62794 62417) ******************************************************************************** EST sequence 19 -strand 479 n (File: SGN-E225784-) 1 CATATTTGCA AATGAAATCA ATAGCAGCAG CAGTGTTGCT CCGCCACCGC CTCGCGGTGG 61 CGCCGGGCCA CAAGGTGGAG CAAAAAATGT CATTGACATT GTTCATGAAA TATGGTCTAG 121 TTATGAATGT TAACCCTAGA GACTTGACTC CAATTTTGGC CAAAATTGAG AATTTTTGCA 181 AAATTGACCA TTCTTGTGGT GGAGAACATA TGATTAATAA TGGTATTAAT CAACCAGGAG 241 CCACTGCAGT AAATGGAATT GCAGCTTGAA GATTTATAAA TCTTGCAAGT GAAAATCATA 301 TAGTAAAAAA TAACTATATA TATATATAGT AAAAAAGGTT ATTTTCATAA CTACTAGATC 361 ATATGAAATG TGGCTATAAG ACAAATAATG TCTACCAGAC TTTTATTTAC ACAGTAGACC 421 TGATATATAA CTTCTTTTTT CCCAAAATTA GATTACATTT TAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 68192 to 66342): Exon 1 67582 67122 ( 461 n); cDNA 1 461 ( 461 n); score: 1.000 PPA cDNA 462 479 MATCH C08SLe0084H03.1- SGN-E225784- 1.000 461 0.962 C PGS_C08SLe0084H03.1-_SGN-E225784- (67582 67122) Alignment (genomic DNA sequence = upper lines): CATATTTGCA AATGAAATCA ATAGCAGCAG CAGTGTTGCT CCGCCACCGC CTCGCGGTGG 67523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATTTGCA AATGAAATCA ATAGCAGCAG CAGTGTTGCT CCGCCACCGC CTCGCGGTGG 60 CGCCGGGCCA CAAGGTGGAG CAAAAAATGT CATTGACATT GTTCATGAAA TATGGTCTAG 67463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGGGCCA CAAGGTGGAG CAAAAAATGT CATTGACATT GTTCATGAAA TATGGTCTAG 120 TTATGAATGT TAACCCTAGA GACTTGACTC CAATTTTGGC CAAAATTGAG AATTTTTGCA 67403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGAATGT TAACCCTAGA GACTTGACTC CAATTTTGGC CAAAATTGAG AATTTTTGCA 180 AAATTGACCA TTCTTGTGGT GGAGAACATA TGATTAATAA TGGTATTAAT CAACCAGGAG 67343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGACCA TTCTTGTGGT GGAGAACATA TGATTAATAA TGGTATTAAT CAACCAGGAG 240 CCACTGCAGT AAATGGAATT GCAGCTTGAA GATTTATAAA TCTTGCAAGT GAAAATCATA 67283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGCAGT AAATGGAATT GCAGCTTGAA GATTTATAAA TCTTGCAAGT GAAAATCATA 300 TAGTAAAAAA TAACTATATA TATATATAGT AAAAAAGGTT ATTTTCATAA CTACTAGATC 67223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTAAAAAA TAACTATATA TATATATAGT AAAAAAGGTT ATTTTCATAA CTACTAGATC 360 ATATGAAATG TGGCTATAAG ACAAATAATG TCTACCAGAC TTTTATTTAC ACAGTAGACC 67163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGAAATG TGGCTATAAG ACAAATAATG TCTACCAGAC TTTTATTTAC ACAGTAGACC 420 TGATATATAA CTTCTTTTTT CCCAAAATTA GATTACATTT T 67122 |||||||||| |||||||||| |||||||||| |||||||||| | TGATATATAA CTTCTTTTTT CCCAAAATTA GATTACATTT T 461 hqPGS_C08SLe0084H03.1-_SGN-E225784- (67582 67122) ******************************************************************************** EST sequence 100 -strand 738 n (File: SGN-E377632-) 1 GCGTTCATTC AGGCGAAGTT TTCATATCGG ATTTGAGAAA CATTGGTAAG GAAAATACTT 61 GGACTTGTCT TGGTGATTCA AGAAAAGCAA CAAATGGTAA GAAAGAAGGG TTTGGGAGTA 121 AAATTGAGAG TCATGGGAAT CAAGTTTTTT GTAGTAAAGG TGGAAATCTC GAATTATGGT 181 CTGAGGTTTT GATTGGTTCT TCGATTAAAG ATCGAGTCTT TAGGAAGAAC TCAATGGGGA 241 GAGCAAAAGA TAGTTGTGGA AATAAGATAA CACATTTCAG CTTTGGAGGT AACAAGATGT 301 TTGTTACAAG GAAAGATCAA CAATTTGTTG AAGTTTGGCA GAGTTCAGTA AGGGGATTTT 361 AAGATTCTTC GAAAATACAC TACTACTTTT GAAAGATACG ACACGTGTGA ATTGCTCCTG 421 GTTGTGCATA ATCATTTGAT AATCAGAGTT ATTCTTCGAT AAATGTTCAC AGTGAGTCAC 481 ACATGTTTGA AGAGTACAGA CAAGTTTGCT CCCCAGAGTC ATTCTTTGAT AAACAATCGT 541 GGTGAGTCAA GACATGTTTG AAGAGTACGA GAAGAGTAGT CTGACTGAAG GACCATCTTA 601 TTATCAATCT ATTAACTCTT GCTGCTCATT ATTATAAATT CTGTATATAC TTTCTTTAGT 661 TGAACTGCAC AAATTGTATG TATATAAAGA GAGTGGAATA TCAAACTTCA ATTTGCTAAT 721 AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 78877 to 76750): Exon 1 78267 77546 ( 722 n); cDNA 1 722 ( 722 n); score: 0.997 PPA cDNA 723 738 MATCH C08SLe0084H03.1- SGN-E377632- 0.997 722 0.978 C PGS_C08SLe0084H03.1-_SGN-E377632- (78267 77546) Alignment (genomic DNA sequence = upper lines): GCGTTCATTC AGGCGAAGTT TTCATATCGG ATTTGAGAAA CATTGGTAAG GAAAATACTT 78208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTTCATTC AGGCGAAGTT TTCATATCGG ATTTGAGAAA CATTGGTAAG GAAAATACTT 60 GGACTTGTCT TGGTGATTCA AGAAAAGCAA CAAATGGTAA GAAAGAAGGG TTTGGGAGTA 78148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTTGTCT TGGTGATTCA AGAAAAGCAA CAAATGGTAA GAAAGAAGGG TTTGGGAGTA 120 AAATTGAGAG TCATGGGAAT CAAGTTTTTT GTAGTAAAGG TGGAAATCTC GAATTATGGT 78088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGAGAG TCATGGGAAT CAAGTTTTTT GTAGTAAAGG TGGAAATCTC GAATTATGGT 180 CTGAGGTTTT GATTGGTTCT TCGATTAAAG ATCGAGTCTT TAGGAAGAAC TCAATGGGGA 78028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGGTTTT GATTGGTTCT TCGATTAAAG ATCGAGTCTT TAGGAAGAAC TCAATGGGGA 240 GAGCAAAAGA TAGTTGTGGA AATAAGATAA CACATTTCAG CTTTGGAGGT AACAAGATGT 77968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAAAAGA TAGTTGTGGA AATAAGATAA CACATTTCAG CTTTGGAGGT AACAAGATGT 300 TTGTTACAAG GAAAGATCAA CAATTTGTTG AAGTTTGGCA GAGTTCAGTA AGGGGATTCT 77908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TTGTTACAAG GAAAGATCAA CAATTTGTTG AAGTTTGGCA GAGTTCAGTA AGGGGATTTT 360 AAGATTCTTC GAAAATACAC TACTACTTTT GAAAGATACG ACACGTGTGA ATTGCTCCTG 77848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTCTTC GAAAATACAC TACTACTTTT GAAAGATACG ACACGTGTGA ATTGCTCCTG 420 GTTGTGCATA ATCATTTGAT AATCAGAGTT ATTCTTCGAT AAATGTTCAC AGTGAGTCAC 77788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGCATA ATCATTTGAT AATCAGAGTT ATTCTTCGAT AAATGTTCAC AGTGAGTCAC 480 ACATGTTTGA AGAGTACAGA CAAGTTTGCT CCCCAGAGTC ATTCTTTGAT AAACAATCGT 77728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGTTTGA AGAGTACAGA CAAGTTTGCT CCCCAGAGTC ATTCTTTGAT AAACAATCGT 540 GGTGAGTCAA GACATGTTTG AAGAGTACGA GAAGAGTAGT CTGACTGAAG GACCATCTTA 77668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAGTCAA GACATGTTTG AAGAGTACGA GAAGAGTAGT CTGACTGAAG GACCATCTTA 600 TTATCAATCT ATTAACTCTT GCTGCTCATT ATTATAAATT CTGTATATAC TTTCTTTAGT 77608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAATCT ATTAACTCTT GCTGCTCATT ATTATAAATT CTGTATATAC TTTCTTTAGT 660 TGAACTGCAC AAATTGTATG TATATAAAGA GAGTGGAATA TCAAACTTCA ATTTGCTACT 77548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TGAACTGCAC AAATTGTATG TATATAAAGA GAGTGGAATA TCAAACTTCA ATTTGCTAAT 720 AA 77546 || AA 722 hqPGS_C08SLe0084H03.1-_SGN-E377632- (78267 77546) ******************************************************************************** EST sequence 113 -strand 696 n (File: SGN-E369463-) 1 AAATACTTGG ACTTGTCTTG GTGATTCAAG AAAAGCAACA AATGGTAAGA AAGAAGGGTT 61 TGGGAGTAAA ATTGAGAGTC ATGGGAATCA AGTTTTTTGT AGTAAAGGTG GAAATCTCGA 121 ATTATGGTCT GAGGTTTTGA TTGGTTCTTC GATTAAAGAT CGAGTCTTTA GGAAGAACTC 181 AATGGGGAGA GCAAAAAATA GTTGTGGAAA TAAAATAACA CATTTCAGCT TTGGAGGTAA 241 CAAAATGTTT GTTACAAGGA AAGATCAACA ATTTGTTGAA GTTTGGCAAA GTTCAGTAAG 301 GGGATTTTAA AATTCTTCGA AAATACACTA CTACTTTTGA AAAATACGAC ACGTGTGAAT 361 TGCTCCTGGT TGTGCATAAT CATTTGATAA TCAAAGTTAT TTTTCGATAA ATGTTCACAG 421 TGAGTCACAC ATGTTTGAAA AGTACAGACA AGTTTGCTCC CCAAAGTCAT TTTTTGATAA 481 ACAATCGTGG TGAGTCAAAA CATGTTTGAA AAGTACGAAA AAAGTAGTTT GACTGAAGGA 541 CCATCTTATT ATCAATCTAT TAACTCTTGC TGCTCATTAT TATAAATTCT GTATATACTT 601 TCTTTAGTTG AACTGCCCAA ATTGTATGTA TATAAAAAGA GTGGAATATC AAACTTCAAT 661 TTGCTACTAA AAAAAAAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 78825 to 76686): Exon 1 78215 77546 ( 670 n); cDNA 1 670 ( 670 n); score: 0.972 PPA cDNA 671 696 MATCH C08SLe0084H03.1- SGN-E369463- 0.972 670 0.963 C PGS_C08SLe0084H03.1-_SGN-E369463- (78215 77546) Alignment (genomic DNA sequence = upper lines): AAATACTTGG ACTTGTCTTG GTGATTCAAG AAAAGCAACA AATGGTAAGA AAGAAGGGTT 78156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATACTTGG ACTTGTCTTG GTGATTCAAG AAAAGCAACA AATGGTAAGA AAGAAGGGTT 60 TGGGAGTAAA ATTGAGAGTC ATGGGAATCA AGTTTTTTGT AGTAAAGGTG GAAATCTCGA 78096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAGTAAA ATTGAGAGTC ATGGGAATCA AGTTTTTTGT AGTAAAGGTG GAAATCTCGA 120 ATTATGGTCT GAGGTTTTGA TTGGTTCTTC GATTAAAGAT CGAGTCTTTA GGAAGAACTC 78036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATGGTCT GAGGTTTTGA TTGGTTCTTC GATTAAAGAT CGAGTCTTTA GGAAGAACTC 180 AATGGGGAGA GCAAAAGATA GTTGTGGAAA TAAGATAACA CATTTCAGCT TTGGAGGTAA 77976 |||||||||| |||||| ||| |||||||||| ||| |||||| |||||||||| |||||||||| AATGGGGAGA GCAAAAAATA GTTGTGGAAA TAAAATAACA CATTTCAGCT TTGGAGGTAA 240 CAAGATGTTT GTTACAAGGA AAGATCAACA ATTTGTTGAA GTTTGGCAGA GTTCAGTAAG 77916 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CAAAATGTTT GTTACAAGGA AAGATCAACA ATTTGTTGAA GTTTGGCAAA GTTCAGTAAG 300 GGGATTCTAA GATTCTTCGA AAATACACTA CTACTTTTGA AAGATACGAC ACGTGTGAAT 77856 |||||| ||| ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GGGATTTTAA AATTCTTCGA AAATACACTA CTACTTTTGA AAAATACGAC ACGTGTGAAT 360 TGCTCCTGGT TGTGCATAAT CATTTGATAA TCAGAGTTAT TCTTCGATAA ATGTTCACAG 77796 |||||||||| |||||||||| |||||||||| ||| |||||| | |||||||| |||||||||| TGCTCCTGGT TGTGCATAAT CATTTGATAA TCAAAGTTAT TTTTCGATAA ATGTTCACAG 420 TGAGTCACAC ATGTTTGAAG AGTACAGACA AGTTTGCTCC CCAGAGTCAT TCTTTGATAA 77736 |||||||||| ||||||||| |||||||||| |||||||||| ||| |||||| | |||||||| TGAGTCACAC ATGTTTGAAA AGTACAGACA AGTTTGCTCC CCAAAGTCAT TTTTTGATAA 480 ACAATCGTGG TGAGTCAAGA CATGTTTGAA GAGTACGAGA AGAGTAGTCT GACTGAAGGA 77676 |||||||||| |||||||| | |||||||||| ||||||| | | |||||| | |||||||||| ACAATCGTGG TGAGTCAAAA CATGTTTGAA AAGTACGAAA AAAGTAGTTT GACTGAAGGA 540 CCATCTTATT ATCAATCTAT TAACTCTTGC TGCTCATTAT TATAAATTCT GTATATACTT 77616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCTTATT ATCAATCTAT TAACTCTTGC TGCTCATTAT TATAAATTCT GTATATACTT 600 TCTTTAGTTG AACTGCACAA ATTGTATGTA TATAAAGAGA GTGGAATATC AAACTTCAAT 77556 |||||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| |||||||||| TCTTTAGTTG AACTGCCCAA ATTGTATGTA TATAAAAAGA GTGGAATATC AAACTTCAAT 660 TTGCTACTAA 77546 |||||||||| TTGCTACTAA 670 hqPGS_C08SLe0084H03.1-_SGN-E369463- (78215 77546) ******************************************************************************** EST sequence 137 -strand 329 n (File: SGN-E283959-) 1 CACGTGTGAA TTGCTCCTGG TTGTGCATAA TCATTTGATA ATCAGAGTTA TTCTTCGATA 61 AATGTTCACA GTGAGTCACA CATGTTTGAA GAGTACAGAC AAGTTTGCTC CCCAGAGTCA 121 TTCTTTGATA AACAATCGTG GTGAGTCAAG ACATGTTTGA AGAGTACGAG AAGAGTAGTC 181 TGACTGAAGG ACCATCTTAT TATCAATCTA TTAACTCTTG CTGCTCATTA TTATAAATTC 241 TGTATATACT TTCTTTAGTT GAACTGCACT AATTGTATGT ATATAAAGAG AGTAGCATAT 301 CTGACTTCAA TTTGCTATTA AAAAAATAA Predicted gene structure (within gDNA segment 78476 to 76614): Exon 1 77866 77546 ( 321 n); cDNA 1 321 ( 321 n); score: 0.981 MATCH C08SLe0084H03.1- SGN-E283959- 0.981 321 0.976 C PGS_C08SLe0084H03.1-_SGN-E283959- (77866 77546) Alignment (genomic DNA sequence = upper lines): CACGTGTGAA TTGCTCCTGG TTGTGCATAA TCATTTGATA ATCAGAGTTA TTCTTCGATA 77807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGTGTGAA TTGCTCCTGG TTGTGCATAA TCATTTGATA ATCAGAGTTA TTCTTCGATA 60 AATGTTCACA GTGAGTCACA CATGTTTGAA GAGTACAGAC AAGTTTGCTC CCCAGAGTCA 77747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTCACA GTGAGTCACA CATGTTTGAA GAGTACAGAC AAGTTTGCTC CCCAGAGTCA 120 TTCTTTGATA AACAATCGTG GTGAGTCAAG ACATGTTTGA AGAGTACGAG AAGAGTAGTC 77687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTGATA AACAATCGTG GTGAGTCAAG ACATGTTTGA AGAGTACGAG AAGAGTAGTC 180 TGACTGAAGG ACCATCTTAT TATCAATCTA TTAACTCTTG CTGCTCATTA TTATAAATTC 77627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTGAAGG ACCATCTTAT TATCAATCTA TTAACTCTTG CTGCTCATTA TTATAAATTC 240 TGTATATACT TTCTTTAGTT GAACTGCACA AATTGTATGT ATATAAAGAG AGTGGAATAT 77567 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||| | |||| TGTATATACT TTCTTTAGTT GAACTGCACT AATTGTATGT ATATAAAGAG AGTAGCATAT 300 CAAACTTCAA TTTGCTACTA A 77546 | ||||||| ||||||| || | CTGACTTCAA TTTGCTATTA A 321 hqPGS_C08SLe0084H03.1-_SGN-E283959- (77866 77546) ******************************************************************************** EST sequence 12 -strand 635 n (File: SGN-E550107-) 1 GAAACATTGG TAAGGAAAAT ACTTGGACTT GTCTTGGTGA TTCAAGAAAA GCAACAAATG 61 GTAAGAAAGA AGGGTTTGGG AGTAAAATTG AGAGTCATGG GAATCAAGTT TTTTGTAGTA 121 AAGGTGGAAA TCTCGAATTA TGGTCTGAGG TTTTGATTGG TTCTTCGATT AAAGATCGAG 181 TCTTTAGGAA GAACTCAATG GGGAGAGCAA AAGATAGTTG TGGAAATAAG ATAACACATT 241 TCAGCTTTGG AGGTAACAAG ATGTTTGTTA CAAGGAAAGA TCAACAATTT GTTGAAGTTT 301 GGCAGAGTTC AGTAAGGGGA TTCTAAGATT CTTCGAAAAT ACACTACTAC TTTTGAAAGA 361 TACGACACGT GTGAATTGCT CCTGGTTGTG CATAATCATT TGATAATCAG AGTTATTCTT 421 CGATAAATGT TCACAGTGAG TCACACATGT TTGAAGAGTA CAGACAAGTT TGCTCCCCAG 481 AGTCATTCTT TGATAAACAA TCGTGGTGAG TCAAGACATG TTTGAAGAGT ACGAGAAGAG 541 TAGTCTGACT GAAGGACCAT CTTATTATCA ATCTATTAAC TCTTGCTGCT CATTATTATA 601 AATTCTGTAT ATACTTTCTT TAGTTGCACT GCACA Predicted gene structure (within gDNA segment 78841 to 76916): Exon 1 78231 77597 ( 635 n); cDNA 1 635 ( 635 n); score: 0.998 MATCH C08SLe0084H03.1- SGN-E550107- 0.998 635 1.000 C PGS_C08SLe0084H03.1-_SGN-E550107- (78231 77597) Alignment (genomic DNA sequence = upper lines): GAAACATTGG TAAGGAAAAT ACTTGGACTT GTCTTGGTGA TTCAAGAAAA GCAACAAATG 78172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACATTGG TAAGGAAAAT ACTTGGACTT GTCTTGGTGA TTCAAGAAAA GCAACAAATG 60 GTAAGAAAGA AGGGTTTGGG AGTAAAATTG AGAGTCATGG GAATCAAGTT TTTTGTAGTA 78112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGAAAGA AGGGTTTGGG AGTAAAATTG AGAGTCATGG GAATCAAGTT TTTTGTAGTA 120 AAGGTGGAAA TCTCGAATTA TGGTCTGAGG TTTTGATTGG TTCTTCGATT AAAGATCGAG 78052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTGGAAA TCTCGAATTA TGGTCTGAGG TTTTGATTGG TTCTTCGATT AAAGATCGAG 180 TCTTTAGGAA GAACTCAATG GGGAGAGCAA AAGATAGTTG TGGAAATAAG ATAACACATT 77992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGGAA GAACTCAATG GGGAGAGCAA AAGATAGTTG TGGAAATAAG ATAACACATT 240 TCAGCTTTGG AGGTAACAAG ATGTTTGTTA CAAGGAAAGA TCAACAATTT GTTGAAGTTT 77932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTTTGG AGGTAACAAG ATGTTTGTTA CAAGGAAAGA TCAACAATTT GTTGAAGTTT 300 GGCAGAGTTC AGTAAGGGGA TTCTAAGATT CTTCGAAAAT ACACTACTAC TTTTGAAAGA 77872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGAGTTC AGTAAGGGGA TTCTAAGATT CTTCGAAAAT ACACTACTAC TTTTGAAAGA 360 TACGACACGT GTGAATTGCT CCTGGTTGTG CATAATCATT TGATAATCAG AGTTATTCTT 77812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGACACGT GTGAATTGCT CCTGGTTGTG CATAATCATT TGATAATCAG AGTTATTCTT 420 CGATAAATGT TCACAGTGAG TCACACATGT TTGAAGAGTA CAGACAAGTT TGCTCCCCAG 77752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATAAATGT TCACAGTGAG TCACACATGT TTGAAGAGTA CAGACAAGTT TGCTCCCCAG 480 AGTCATTCTT TGATAAACAA TCGTGGTGAG TCAAGACATG TTTGAAGAGT ACGAGAAGAG 77692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCATTCTT TGATAAACAA TCGTGGTGAG TCAAGACATG TTTGAAGAGT ACGAGAAGAG 540 TAGTCTGACT GAAGGACCAT CTTATTATCA ATCTATTAAC TCTTGCTGCT CATTATTATA 77632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTCTGACT GAAGGACCAT CTTATTATCA ATCTATTAAC TCTTGCTGCT CATTATTATA 600 AATTCTGTAT ATACTTTCTT TAGTTGAACT GCACA 77597 |||||||||| |||||||||| |||||| ||| ||||| AATTCTGTAT ATACTTTCTT TAGTTGCACT GCACA 635 hqPGS_C08SLe0084H03.1-_SGN-E550107- (78231 77597) ******************************************************************************** EST sequence 238 +strand 692 n (File: SGN-E369464+) 1 TTTACAAATT ATTGATGTTA GTAAAGGTTT TGTTAAAGAA ACTTTGAATT GGGAAAATGT 61 TACCAAGTCT GGTTCAACAG TACAAGGCAT AGGTGCTTCA AAAGAGTTTT TGTTTACGAG 121 TTTCGAATCA TCTAGGAGAA ACTCTAACTG CATTATGATA TATGATTTGA GTGATAATGG 181 TTTTAGGCCT GTTTCTGAGA TAGGTCATTA TGAAATCTTT GGTGCTGAAT TAGATTCCGC 241 GATTCCAGCT ACTAAACTTA GATGGATTCC TAGTTATAAC TTGTTGATGG CTGCTGGTTC 301 ACACAGTGGA CCTTCTGGTG TTAGAGGGAA CATTAGGTTT TGGGACTTGA GATCAGGGAA 361 CGCGGTGTGG GAGATCAAGG AAAATGTTGA TTGCTTCGCT GATTGCACTG TTTCGGATGA 421 TCTTTCAGCA ATTCTGAAAG TTGGCGTTCA TTCAGGCGAA GTTTTCATAT CGGATTTGAG 481 AAACATTGGT AAGGAAAATA CTTGGACTTG TCTTGGTGAT TCAAGAAAAG CAACAAATGG 541 TAAGAAAGAA GGGTTTGGGA GTAAAATTGA GAGTCATGGG AATCAAGTTT TTTGTAGTAA 601 AGGTGGAAAT CTCGAATTAT GGTCTGAGGT TTTGATTGGT TCTTCGATTA AAGATCGAGT 661 CTTTAGGAAG AACTCAATGG GGAGAGCAAA AG Predicted gene structure (within gDNA segment 79310 to 77409): Exon 1 78710 78019 ( 692 n); cDNA 1 692 ( 692 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E369464+ 1.000 692 1.000 C PGS_C08SLe0084H03.1-_SGN-E369464+ (78710 78019) Alignment (genomic DNA sequence = upper lines): TTTACAAATT ATTGATGTTA GTAAAGGTTT TGTTAAAGAA ACTTTGAATT GGGAAAATGT 78651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAAATT ATTGATGTTA GTAAAGGTTT TGTTAAAGAA ACTTTGAATT GGGAAAATGT 60 TACCAAGTCT GGTTCAACAG TACAAGGCAT AGGTGCTTCA AAAGAGTTTT TGTTTACGAG 78591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCAAGTCT GGTTCAACAG TACAAGGCAT AGGTGCTTCA AAAGAGTTTT TGTTTACGAG 120 TTTCGAATCA TCTAGGAGAA ACTCTAACTG CATTATGATA TATGATTTGA GTGATAATGG 78531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGAATCA TCTAGGAGAA ACTCTAACTG CATTATGATA TATGATTTGA GTGATAATGG 180 TTTTAGGCCT GTTTCTGAGA TAGGTCATTA TGAAATCTTT GGTGCTGAAT TAGATTCCGC 78471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAGGCCT GTTTCTGAGA TAGGTCATTA TGAAATCTTT GGTGCTGAAT TAGATTCCGC 240 GATTCCAGCT ACTAAACTTA GATGGATTCC TAGTTATAAC TTGTTGATGG CTGCTGGTTC 78411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCAGCT ACTAAACTTA GATGGATTCC TAGTTATAAC TTGTTGATGG CTGCTGGTTC 300 ACACAGTGGA CCTTCTGGTG TTAGAGGGAA CATTAGGTTT TGGGACTTGA GATCAGGGAA 78351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAGTGGA CCTTCTGGTG TTAGAGGGAA CATTAGGTTT TGGGACTTGA GATCAGGGAA 360 CGCGGTGTGG GAGATCAAGG AAAATGTTGA TTGCTTCGCT GATTGCACTG TTTCGGATGA 78291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGGTGTGG GAGATCAAGG AAAATGTTGA TTGCTTCGCT GATTGCACTG TTTCGGATGA 420 TCTTTCAGCA ATTCTGAAAG TTGGCGTTCA TTCAGGCGAA GTTTTCATAT CGGATTTGAG 78231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTCAGCA ATTCTGAAAG TTGGCGTTCA TTCAGGCGAA GTTTTCATAT CGGATTTGAG 480 AAACATTGGT AAGGAAAATA CTTGGACTTG TCTTGGTGAT TCAAGAAAAG CAACAAATGG 78171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACATTGGT AAGGAAAATA CTTGGACTTG TCTTGGTGAT TCAAGAAAAG CAACAAATGG 540 TAAGAAAGAA GGGTTTGGGA GTAAAATTGA GAGTCATGGG AATCAAGTTT TTTGTAGTAA 78111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAAAGAA GGGTTTGGGA GTAAAATTGA GAGTCATGGG AATCAAGTTT TTTGTAGTAA 600 AGGTGGAAAT CTCGAATTAT GGTCTGAGGT TTTGATTGGT TCTTCGATTA AAGATCGAGT 78051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGAAAT CTCGAATTAT GGTCTGAGGT TTTGATTGGT TCTTCGATTA AAGATCGAGT 660 CTTTAGGAAG AACTCAATGG GGAGAGCAAA AG 78019 |||||||||| |||||||||| |||||||||| || CTTTAGGAAG AACTCAATGG GGAGAGCAAA AG 692 hqPGS_C08SLe0084H03.1-_SGN-E369464+ (78710 78019) ******************************************************************************** EST sequence 154 +strand 538 n (File: SGN-E242677+) 1 TTTACAAATT ATTGATGTTA GTAAAGGTTT TGTTAAAGAA ACTTTGAATT GGGAAAATGT 61 TACCAAGTCT GGTTCAACAG TACAAGGCAT AGGTGCTTCA AAAGAGTTTT TGTTTACGAG 121 TTTCGAATCA TCTAGGAGAA ACTCTAACTG CATTATGATA TATGATTTGA GTGATAATGG 181 TTTTAGGCCT GTTTCTGAGA TAGGTCATTA TGAAATCTTT GGTGCTGAAT TAGATTCCGC 241 GATTCCAGCT ACTAAACTTA GATGGATTCC TAGTTATAAC TTGTTGATGG CTGCTGGTTC 301 ACACAGTGGA CCTTCTGGTG TTAGAGGGAA CATTAGGTTT TGGGACTTGA GATCAGGGAA 361 CGCGGTGTGG GAGATCAAGG AAAATGTTGA TTGCTTCGCT GATTGCACTG TTTCGGATGA 421 TCTTTCAGCA ATTCTGAAAG TTGGCGTTCA TTCAGGCGAA GTTTTCATAT CGGATTTGAG 481 AAACATTGGT AAGGAAAATA CTTGGACTTG TCTTGGTGAT TCAAGAAAAG CAACAAAT Predicted gene structure (within gDNA segment 79310 to 77563): Exon 1 78710 78173 ( 538 n); cDNA 1 538 ( 538 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E242677+ 1.000 538 1.000 C PGS_C08SLe0084H03.1-_SGN-E242677+ (78710 78173) Alignment (genomic DNA sequence = upper lines): TTTACAAATT ATTGATGTTA GTAAAGGTTT TGTTAAAGAA ACTTTGAATT GGGAAAATGT 78651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAAATT ATTGATGTTA GTAAAGGTTT TGTTAAAGAA ACTTTGAATT GGGAAAATGT 60 TACCAAGTCT GGTTCAACAG TACAAGGCAT AGGTGCTTCA AAAGAGTTTT TGTTTACGAG 78591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCAAGTCT GGTTCAACAG TACAAGGCAT AGGTGCTTCA AAAGAGTTTT TGTTTACGAG 120 TTTCGAATCA TCTAGGAGAA ACTCTAACTG CATTATGATA TATGATTTGA GTGATAATGG 78531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGAATCA TCTAGGAGAA ACTCTAACTG CATTATGATA TATGATTTGA GTGATAATGG 180 TTTTAGGCCT GTTTCTGAGA TAGGTCATTA TGAAATCTTT GGTGCTGAAT TAGATTCCGC 78471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAGGCCT GTTTCTGAGA TAGGTCATTA TGAAATCTTT GGTGCTGAAT TAGATTCCGC 240 GATTCCAGCT ACTAAACTTA GATGGATTCC TAGTTATAAC TTGTTGATGG CTGCTGGTTC 78411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCAGCT ACTAAACTTA GATGGATTCC TAGTTATAAC TTGTTGATGG CTGCTGGTTC 300 ACACAGTGGA CCTTCTGGTG TTAGAGGGAA CATTAGGTTT TGGGACTTGA GATCAGGGAA 78351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAGTGGA CCTTCTGGTG TTAGAGGGAA CATTAGGTTT TGGGACTTGA GATCAGGGAA 360 CGCGGTGTGG GAGATCAAGG AAAATGTTGA TTGCTTCGCT GATTGCACTG TTTCGGATGA 78291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGGTGTGG GAGATCAAGG AAAATGTTGA TTGCTTCGCT GATTGCACTG TTTCGGATGA 420 TCTTTCAGCA ATTCTGAAAG TTGGCGTTCA TTCAGGCGAA GTTTTCATAT CGGATTTGAG 78231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTCAGCA ATTCTGAAAG TTGGCGTTCA TTCAGGCGAA GTTTTCATAT CGGATTTGAG 480 AAACATTGGT AAGGAAAATA CTTGGACTTG TCTTGGTGAT TCAAGAAAAG CAACAAAT 78173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AAACATTGGT AAGGAAAATA CTTGGACTTG TCTTGGTGAT TCAAGAAAAG CAACAAAT 538 hqPGS_C08SLe0084H03.1-_SGN-E242677+ (78710 78173) ******************************************************************************** EST sequence 228 +strand 533 n (File: SGN-E320390+) 1 TAGGTGGTCA TCTTTTTCAA ACAACCAAAC AAACCCTAAA GCAATCAGGT TCAAAATCAA 61 TACTTTCTGA AATTTCAAAT CTTGATGGTT CCATTCCTTT CATCGATAGA GATCCAGAAA 121 TGTTCTCAAT CTTGCTTTCC CTTTTAAGAA CTGGGAATCT CCCTTCAAAA GCCAAAACTT 181 TTGATATTCA AGATTTGGTT TTTGAATCTC AGTTTTATGG TGTTGAGCAT CTGTTATTGA 241 ATTCCCATTC TAACCCTTCT CAGTTTGAGC CTTTTGATCT TGAAAAATCT TTGATTTTGC 301 CTTTAAGTGG TAGGGATTCA CCTACTGCTA TCTCAACAAC TCAATTAGGG TCAGTTCAGG 361 TAGCTCATGG TTGTAAAATC ACTTCATTTG ATTGGTCATT AAAGAGAAAA TCAACCATTT 421 TAACACAATT TGCTGGTATT GACTCTATGT TATCTGTATC ACCAAATGTT GTTGCTGCTG 481 GTGCTACTGA CTTTTCAGGT TTACAAATTA TTGATGTTAG TAAAGGGTTT GTT Predicted gene structure (within gDNA segment 79809 to 78004): Exon 1 79209 78677 ( 533 n); cDNA 1 533 ( 533 n); score: 0.998 MATCH C08SLe0084H03.1- SGN-E320390+ 0.998 533 1.000 C PGS_C08SLe0084H03.1-_SGN-E320390+ (79209 78677) Alignment (genomic DNA sequence = upper lines): TAGGTGGTCA TCTTTTTCAA ACAACCAAAC AAACCCTAAA GCAATCAGGT TCAAAATCAA 79150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGTGGTCA TCTTTTTCAA ACAACCAAAC AAACCCTAAA GCAATCAGGT TCAAAATCAA 60 TACTTTCTGA AATTTCAAAT CTTGATGGTT CCATTCCTTT CATCGATAGA GATCCAGAAA 79090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTTCTGA AATTTCAAAT CTTGATGGTT CCATTCCTTT CATCGATAGA GATCCAGAAA 120 TGTTCTCAAT CTTGCTTTCC CTTTTAAGAA CTGGGAATCT CCCTTCAAAA GCCAAAACTT 79030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCTCAAT CTTGCTTTCC CTTTTAAGAA CTGGGAATCT CCCTTCAAAA GCCAAAACTT 180 TTGATATTCA AGATTTGGTT TTTGAATCTC AGTTTTATGG TGTTGAGCAT CTGTTATTGA 78970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATATTCA AGATTTGGTT TTTGAATCTC AGTTTTATGG TGTTGAGCAT CTGTTATTGA 240 ATTCCCATTC TAACCCTTCT CAGTTTGAGC CTTTTGATCT TGAAAAATCT TTGATTTTGC 78910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCCATTC TAACCCTTCT CAGTTTGAGC CTTTTGATCT TGAAAAATCT TTGATTTTGC 300 CTTTAAGTGG TAGGGATTCA CCTACTGCTA TCTCAACAAC TCAATTAGGG TCAGTTCAGG 78850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAGTGG TAGGGATTCA CCTACTGCTA TCTCAACAAC TCAATTAGGG TCAGTTCAGG 360 TAGCTCATGG TTGTAAAATC ACTTCATTTG ATTGGTCATT AAAGAGAAAA TCAACCATTT 78790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTCATGG TTGTAAAATC ACTTCATTTG ATTGGTCATT AAAGAGAAAA TCAACCATTT 420 TAACACAATT TGCTGGTATT GACTCTATGT TATCTGTATC ACCAAATGTT GTTGCTGCTG 78730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACACAATT TGCTGGTATT GACTCTATGT TATCTGTATC ACCAAATGTT GTTGCTGCTG 480 GTGCTACTGA CTTTTCAGGT TTACAAATTA TTGATGTTAG TAAAGGTTTT GTT 78677 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||| GTGCTACTGA CTTTTCAGGT TTACAAATTA TTGATGTTAG TAAAGGGTTT GTT 533 hqPGS_C08SLe0084H03.1-_SGN-E320390+ (79209 78677) ******************************************************************************** EST sequence 153 +strand 726 n (File: SGN-E550106+) 1 AAACCAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 61 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 121 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 181 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 241 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 301 GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 361 TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 421 GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 481 ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 541 TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 601 TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTCAATT ANGGTCAGTT 661 CAGGTAGCTC ATGGTTGTAA AATCACTTCA TTTGATTGGT CATTAAAGAG AAAATCACCA 721 TTTTAA Predicted gene structure (within gDNA segment 80158 to 78097): Exon 1 79513 78787 ( 727 n); cDNA 1 726 ( 726 n); score: 0.996 MATCH C08SLe0084H03.1- SGN-E550106+ 0.996 727 1.001 C PGS_C08SLe0084H03.1-_SGN-E550106+ (79513 78787) Alignment (genomic DNA sequence = upper lines): AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 79454 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 60 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 79394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 120 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 79334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 180 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 79274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 240 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 79214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 300 GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 79154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 360 TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 79094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 420 GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 79034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 480 ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 78974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 540 TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 78914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 600 TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTCAATT AGGGTCAGTT 78854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTCAATT ANGGTCAGTT 660 CAGGTAGCTC ATGGTTGTAA AATCACTTCA TTTGATTGGT CATTAAAGAG AAAATCAACC 78794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CAGGTAGCTC ATGGTTGTAA AATCACTTCA TTTGATTGGT CATTAAAGAG AAAATC-ACC 719 ATTTTAA 78787 ||||||| ATTTTAA 726 hqPGS_C08SLe0084H03.1-_SGN-E550106+ (79513 78787) ******************************************************************************** EST sequence 223 +strand 699 n (File: SGN-E377633+) 1 AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 61 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 121 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 181 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 241 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 301 GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 361 TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 421 GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 481 ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 541 TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 601 TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTCAATT AGGGTCAGTT 661 CAGGTAGCTC ATGGTTGTAA AATCACTTCA TTTGATTGG Predicted gene structure (within gDNA segment 80113 to 78205): Exon 1 79513 78815 ( 699 n); cDNA 1 699 ( 699 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E377633+ 1.000 699 1.000 C PGS_C08SLe0084H03.1-_SGN-E377633+ (79513 78815) Alignment (genomic DNA sequence = upper lines): AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 79454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 60 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 79394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 120 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 79334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 180 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 79274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 240 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 79214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 300 GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 79154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 360 TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 79094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 420 GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 79034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 480 ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 78974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 540 TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 78914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 600 TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTCAATT AGGGTCAGTT 78854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTCAATT AGGGTCAGTT 660 CAGGTAGCTC ATGGTTGTAA AATCACTTCA TTTGATTGG 78815 |||||||||| |||||||||| |||||||||| ||||||||| CAGGTAGCTC ATGGTTGTAA AATCACTTCA TTTGATTGG 699 hqPGS_C08SLe0084H03.1-_SGN-E377633+ (79513 78815) ******************************************************************************** EST sequence 174 +strand 698 n (File: SGN-E389766+) 1 CGGGCTGCAG GAAAATCAAA GTTTTTTACA TTGAAATTTC AAGAATTCAT TCCCAAAGCT 61 TGAAAAACAC CATTCTTGAA TCACACAAAA TCACAAAAGA ATGAGTCTTT ACATTGTATT 121 TCAAGAATTC CCAAAGCTTT GAAATCACCA TTCTTGAAAA AAGTTCCAAA GAAAAAAATA 181 TATAAAAATT GAGTCTTTAC ATTGAATTTC AAGAATTTCC CAATAAAAGA TGCCACCTTT 241 TATTGGATCT CATCCTCTTT CATCTGGTTT TTCAAGAAAC TCCATTGATT CATCTTCAAA 301 TATTGTCACC ATTGATGTAG GTGGTCATCT TTTTCAAACA ACCAAACAAA CCCTAAAGCA 361 ATCAGGTTCA AAATCAATAC TTTCTGAAAT TTCAAATCTT GATGGTTCCA TTCCTTTCAT 421 CGATAGAGAT CCAGAAATGT TCTCAATCTT GCTTTCCCTT TTAAGAACTG GGAATCTCCC 481 TTCAAAAGCC AAAACTTTTG ATATTCAAGA TTTGGTTTTT GAATCTCAGT TTTATGGTGT 541 TGAGCATCTG TTATTGAATT CCCATTCTAA CCCTTCTCAG TTTGAGCCTT TTGATCTTGA 601 AAAATCTTTG ATTTTGCCTT TAAGTGGTAG GGATTCACCT ACTGCTGATC TCACAACTCA 661 ATTAGGGTCA GTTCAGGTAG CTCATGGTTG TAAAATCA Predicted gene structure (within gDNA segment 80270 to 78219): Exon 1 79509 78829 ( 681 n); cDNA 18 698 ( 681 n); score: 0.995 MATCH C08SLe0084H03.1- SGN-E389766+ 0.995 681 0.976 C PGS_C08SLe0084H03.1-_SGN-E389766+ (79509 78829) Alignment (genomic DNA sequence = upper lines): AAAGTTTTTT ACATTGAAAT TTCAAGAATT CATTCCCAAA GCTTGAAAAA CACCATTCTT 79450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTTTT ACATTGAAAT TTCAAGAATT CATTCCCAAA GCTTGAAAAA CACCATTCTT 77 GAATCACACA AAATCACAAA AGAATGAGTC TTTACATTGT ATTTCAAGAA TTCCCAAAGC 79390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCACACA AAATCACAAA AGAATGAGTC TTTACATTGT ATTTCAAGAA TTCCCAAAGC 137 TTTGAAATCA CCATTCTTGA AAAAAGTTCC AAAGAAAAAA ATATATAAAA ATTGAGTCTT 79330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAATCA CCATTCTTGA AAAAAGTTCC AAAGAAAAAA ATATATAAAA ATTGAGTCTT 197 TACATTGAAT TTCAAGAATT TCCCAATAAA AGATGCCACC TTTTATTGGA TCTCATCCTC 79270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTGAAT TTCAAGAATT TCCCAATAAA AGATGCCACC TTTTATTGGA TCTCATCCTC 257 TTTCATCTGG TTTTTCAAGA AACTCCATTG ATTCATCTTC AAATATTGTC ACCATTGATG 79210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATCTGG TTTTTCAAGA AACTCCATTG ATTCATCTTC AAATATTGTC ACCATTGATG 317 TAGGTGGTCA TCTTTTTCAA ACAACCAAAC AAACCCTAAA GCAATCAGGT TCAAAATCAA 79150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGTGGTCA TCTTTTTCAA ACAACCAAAC AAACCCTAAA GCAATCAGGT TCAAAATCAA 377 TACTTTCTGA AATTTCAAAT CTTGATGGTT CCATTCCTTT CATCGATAGA GATCCAGAAA 79090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTTCTGA AATTTCAAAT CTTGATGGTT CCATTCCTTT CATCGATAGA GATCCAGAAA 437 TGTTCTCAAT CTTGCTTTCC CTTTTAAGAA CTGGGAATCT CCCTTCAAAA GCCAAAACTT 79030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCTCAAT CTTGCTTTCC CTTTTAAGAA CTGGGAATCT CCCTTCAAAA GCCAAAACTT 497 TTGATATTCA AGATTTGGTT TTTGAATCTC AGTTTTATGG TGTTGAGCAT CTGTTATTGA 78970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATATTCA AGATTTGGTT TTTGAATCTC AGTTTTATGG TGTTGAGCAT CTGTTATTGA 557 ATTCCCATTC TAACCCTTCT CAGTTTGAGC CTTTTGATCT TGAAAAATCT TTGATTTTGC 78910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCCATTC TAACCCTTCT CAGTTTGAGC CTTTTGATCT TGAAAAATCT TTGATTTTGC 617 CTTTAAGTGG TAGGGATTCA CCTACTGCT- ATCTCAACAA CTCAATTAGG GTCAGTTCAG 78851 |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| CTTTAAGTGG TAGGGATTCA CCTACTGCTG ATCTC-ACAA CTCAATTAGG GTCAGTTCAG 676 GTAGCTCATG GTTGTAAAAT CA 78829 |||||||||| |||||||||| || GTAGCTCATG GTTGTAAAAT CA 698 hqPGS_C08SLe0084H03.1-_SGN-E389766+ (79509 78829) ******************************************************************************** EST sequence 220 +strand 506 n (File: SGN-E247439+) 1 AGTATTTGGC TTGTGTTCAT TTGGCATAAA TTTTCTTGAA ATGGGTTTTT TTTTTCCTCA 61 TAAAAATGCC ACCTTTTGTT GGATCAAACC CTCTTTCATA TGGTTTCAGA CACAAAAACA 121 ACAACAACAT GGATTCAGAT TCCAACATAG TCACCATTAA TGTTGGTGGT CATCTTTTTC 181 AAACAACCAA ACAAACCCTA AATCAAGCAG GTTCAAAATC CCTTTTTTCC ACAATTTCTA 241 GTAATGATTC AATTCCATTT ATTGATAGAG ACCCTGAAAT TTTCTCTGTT TTACTATCCC 301 TTTTAAGAAC TGGAAATTTA CCATCAAAAG CTAAAAACTT TGATATTCAA GATTTGATTT 361 TTGAAGCTAA ATTTTATGGT GTAGAACAAC TTATTTTGAA TTCCCAGTCA AACCCATCTC 421 AGTTTGAGCC TTTTGATCTT GAAAAATCTC TTCTTTTACC TTTAACTGGT AGAGATTCAC 481 CTACAGCAAT TTCCACAACA CAAAAT Predicted gene structure (within gDNA segment 81447 to 77740): Exon 1 79249 78866 ( 384 n); cDNA 123 503 ( 381 n); score: 0.820 MATCH C08SLe0084H03.1- SGN-E247439+ 0.820 384 0.759 C PGS_C08SLe0084H03.1-_SGN-E247439+ (79249 78866) Alignment (genomic DNA sequence = upper lines): AACTCCATTG ATTCATCTTC AAATATTGTC ACCATTGATG TAGGTGGTCA TCTTTTTCAA 79190 ||| ||| | ||||| ||| || || ||| |||||| ||| | |||||||| |||||||||| AACAACATGG ATTCAGATTC CAACATAGTC ACCATTAATG TTGGTGGTCA TCTTTTTCAA 182 ACAACCAAAC AAACCCTAAA GCAATCAGGT TCAAAATCAA TACTTTCTGA AATTTCAAAT 79130 |||||||||| |||||||||| ||| ||||| |||||||| | |||| |||||| | | ACAACCAAAC AAACCCTAAA TCAAGCAGGT TCAAAATCCC TTTTTTCCAC AATTTCTAGT 242 CTTGATGGTT CCATTCCTTT CATCGATAGA GATCCAGAAA TGTTCTCAAT CTTGCTTTCC 79070 ||| || | ||||| || || |||||| || || |||| | ||||| | || || ||| AATGA---TT CAATTCCATT TATTGATAGA GACCCTGAAA TTTTCTCTGT TTTACTATCC 299 CTTTTAAGAA CTGGGAATCT CCCTTCAAAA GCCAAAACTT TTGATATTCA AGATTTGGTT 79010 |||||||||| |||| ||| | || |||||| || |||| | |||||||||| ||||||| || CTTTTAAGAA CTGGAAATTT ACCATCAAAA GCTAAAAACT TTGATATTCA AGATTTGATT 359 TTTGAATCTC AGTTTTATGG TGTTGAGCAT CTGTTATTGA ATTCCCATTC TAACCCTTCT 78950 |||||| || | |||||||| ||| || || || | |||| ||||||| || ||||| ||| TTTGAAGCTA AATTTTATGG TGTAGAACAA CTTATTTTGA ATTCCCAGTC AAACCCATCT 419 CAGTTTGAGC CTTTTGATCT TGAAAAATCT TTGATTTTGC CTTTAAGTGG TAGGGATTCA 78890 |||||||||| |||||||||| |||||||||| | |||| | |||||| ||| ||| |||||| CAGTTTGAGC CTTTTGATCT TGAAAAATCT CTTCTTTTAC CTTTAACTGG TAGAGATTCA 479 CCTACTGCTA TCTCAACAAC TCAA 78866 ||||| || | | || ||||| ||| CCTACAGCAA TTTCCACAAC ACAA 503 hqPGS_C08SLe0084H03.1-_SGN-E247439+ (79249 78866) ******************************************************************************** EST sequence 197 +strand 646 n (File: SGN-E233090+) 1 AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 61 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 121 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 181 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 241 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 301 GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 361 TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 421 GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 481 ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 541 TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 601 TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTC Predicted gene structure (within gDNA segment 80113 to 78258): Exon 1 79513 78868 ( 646 n); cDNA 1 646 ( 646 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E233090+ 1.000 646 1.000 C PGS_C08SLe0084H03.1-_SGN-E233090+ (79513 78868) Alignment (genomic DNA sequence = upper lines): AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 79454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 60 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 79394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 120 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 79334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 180 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 79274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 240 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 79214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 300 GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 79154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAGGTG GTCATCTTTT TCAAACAACC AAACAAACCC TAAAGCAATC AGGTTCAAAA 360 TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 79094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATACTTT CTGAAATTTC AAATCTTGAT GGTTCCATTC CTTTCATCGA TAGAGATCCA 420 GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 79034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGTTCT CAATCTTGCT TTCCCTTTTA AGAACTGGGA ATCTCCCTTC AAAAGCCAAA 480 ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 78974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTGATA TTCAAGATTT GGTTTTTGAA TCTCAGTTTT ATGGTGTTGA GCATCTGTTA 540 TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 78914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATTCCC ATTCTAACCC TTCTCAGTTT GAGCCTTTTG ATCTTGAAAA ATCTTTGATT 600 TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTC 78868 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGCCTTTAA GTGGTAGGGA TTCACCTACT GCTATCTCAA CAACTC 646 hqPGS_C08SLe0084H03.1-_SGN-E233090+ (79513 78868) ******************************************************************************** EST sequence 210 +strand 539 n (File: SGN-E337323+) 1 TTGATTCATC TTATAACAAA CTCAACAACC CCATAATTTA GGTCTTGTTA GTATTTGGCT 61 TGTGTTCATT TGGCATAAAT TTTCTTGAAA TTTGTTTTTT TTTTCCTCAT AAAAATGCCA 121 CCTTTTGTTG GATCAAACCC TCTTTCATAT GGTTTCAGAC ACAAAAACAA CAACAACATG 181 GATTCAGATT CCAACATAGT CACCATTAAT GTTGGTGGTC ATCTTTTTCA AACAACCAAA 241 CAAACCCTAA ATCAAGCAGG TTCAAAATCC CTTTTTTTCC ACAATTTCTA GTAATGATTC 301 AATTCCATTT ATTGATAGAG ACCCTGAAAT TTTCTCTGTT TTACTATCCC TTTTAAGAAC 361 TGGAAATTTA CCATCAAAAG CTAAAAACTT TGATATTCAA GATTTGATTT TTGAAGCTAA 421 ATTTTATGGT GTAGAACAAC TTATTTTGAA TTCCCAGTCA AACCCATCTC AGTTTGAGCC 481 TTTTGATCTT GAAAAATCTC TTCTTTTACC TTTAACTGGT AGAGATTCAC CTACAGCAA Predicted gene structure (within gDNA segment 81937 to 77910): Exon 1 80117 80103 ( 15 n); cDNA 87 101 ( 15 n); score: 0.600 Intron 1 80102 79312 ( 791 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 79311 78882 ( 430 n); cDNA 102 537 ( 436 n); score: 0.767 MATCH C08SLe0084H03.1- SGN-E337323+ 0.767 445 0.826 C PGS_C08SLe0084H03.1-_SGN-E337323+ (80117 80103,79311 78882) Alignment (genomic DNA sequence = upper lines): GACATTGCAA TTTTCATATT CTTTCTTCAT CTCATTGCGT CAATCAAATA GCTTAATTTT 80058 || ||| |||| GAAATTTGTT TTTTT..... .......... .......... .......... .......... 101 TTTTATGTGA ATATTAAACT AATATACCTT CATCAACTAT TATACAAATA GTATCATGTC 79998 .......... .......... .......... .......... .......... .......... 101 AATTAAACAT AAAGTCAAAT ATTCCAAATA TTTTTAAATA ATCTTCTTTT CATTATTTCT 79938 .......... .......... .......... .......... .......... .......... 101 TTTTATTTCA TCTCCCCACT CTTACACAAA TATTCTTTGA ATAAAGGAAA ATTTGGTCTA 79878 .......... .......... .......... .......... .......... .......... 101 TGTTGGATTG CTATATTAAC CCTCGTGCAA CAAAAGTCAA ACAACTAAAA TATTCTAGAA 79818 .......... .......... .......... .......... .......... .......... 101 ACAAAAAAAA AGAAGAAGCC ATTTTTGACC AATTTCAGTT TCTATGACTT TCTAGAGCCC 79758 .......... .......... .......... .......... .......... .......... 101 CTATTTTAGC AATTCCATAA TTTTAAATAT TTCAATTTCC CCATATTTTT TTAAACCAAT 79698 .......... .......... .......... .......... .......... .......... 101 TAATTATTCA TCTAACCAGG AAACTTCCAA TAATAATTAA TACTAGTTGC TTTTGAATTC 79638 .......... .......... .......... .......... .......... .......... 101 AAAGATCCCA ACTTTTATTT TTCTTTTAAA AAAGAAAAAT CAAAGTCTTA CCCTCTATAT 79578 .......... .......... .......... .......... .......... .......... 101 AAATATTGAA CCCCATTCTT GAATTTACCC AAAATCACCA AAAAAGAAAA TCTAAAGAAA 79518 .......... .......... .......... .......... .......... .......... 101 AAAAAAACAA AGTTTTTTAC ATTGAAATTT CAAGAATTCA TTCCCAAAGC TTGAAAAACA 79458 .......... .......... .......... .......... .......... .......... 101 CCATTCTTGA ATCACACAAA ATCACAAAAG AATGAGTCTT TACATTGTAT TTCAAGAATT 79398 .......... .......... .......... .......... .......... .......... 101 CCCAAAGCTT TGAAATCACC ATTCTTGAAA AAAGTTCCAA AGAAAAAAAT ATATAAAAAT 79338 .......... .......... .......... .......... .......... .......... 101 TGAGTCTTTA CATTGAATTT CAAGAATTTC CCAATAAAAG ATGCCACCTT TTATTGGATC 79278 |||| | |||||| |||||||||| || ||||||| .......... .......... ......TTTC CTCATAAAA- ATGCCACCTT TTGTTGGATC 134 TCATCCTCTT TCATCTGGTT T--TTCA-AG AAAC-TC--C -A-TTG-ATT CATCTTCAAA 79227 | |||||| |||| ||||| | || | |||| | | | || ||| || ||| || AAACCCTCTT TCATATGGTT TCAGACACAA AAACAACAAC AACATGGATT CAGATTCCAA 194 TATTGTCACC ATTGATGTAG GTGGTCATCT TTTTCAAACA ACCAAACAAA CCCTAAAGCA 79167 || |||||| ||| |||| | |||||||||| |||||||||| |||||||||| ||||||| || CATAGTCACC ATTAATGTTG GTGGTCATCT TTTTCAAACA ACCAAACAAA CCCTAAATCA 254 ATCAGGTTCA AAAT-CAATA CTTTCTGAAA TTTCAAATCT TGATGGTTCC ATTCCTTTCA 79108 | |||||||| |||| | | |||| || |||| | | ||| ||| ||||| || | AGCAGGTTCA AAATCCCTTT TTTTCCACAA TTTC---TAG TAATGATTCA ATTCCATTTA 311 TCGATAGAGA TCCAGAAATG TTCTCAATCT TGCTTTCCCT TTTAAGAACT GGGAATCTCC 79048 | |||||||| || ||||| ||||| | | | || ||||| |||||||||| || ||| | | TTGATAGAGA CCCTGAAATT TTCTCTGTTT TACTATCCCT TTTAAGAACT GGAAATTTAC 371 CTTCAAAAGC CAAAACTTTT GATATTCAAG ATTTGGTTTT TGAATCTCAG TTTTATGGTG 78988 | |||||||| |||| ||| |||||||||| ||||| |||| |||| || | |||||||||| CATCAAAAGC TAAAAACTTT GATATTCAAG ATTTGATTTT TGAAGCTAAA TTTTATGGTG 431 TTGAGCATCT GTTATTGAAT TCCCATTCTA ACCCTTCTCA GTTTGAGCCT TTTGATCTTG 78928 | || || || | |||||| ||||| || | |||| ||||| |||||||||| |||||||||| TAGAACAACT TATTTTGAAT TCCCAGTCAA ACCCATCTCA GTTTGAGCCT TTTGATCTTG 491 AAAAATCTTT GATTTTGCCT TTAAGTGGTA GGGATTCACC TACTGC 78882 |||||||| | |||| ||| |||| ||||| | |||||||| ||| || AAAAATCTCT TCTTTTACCT TTAACTGGTA GAGATTCACC TACAGC 537 hqPGS_C08SLe0084H03.1-_SGN-E337323+ (79311 78882) ******************************************************************************** EST sequence 219 +strand 464 n (File: SGN-E287838+) 1 AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 61 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 121 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 181 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 241 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 301 GATGTAGGTG GTCATCTTTT TTCAAACAAC CAAACAAACC CTAAAGCAAT CAGGTTCAAA 361 ATCAATACTT TCTGAAATTT CAAATCTTGA TGGTTCCATT CCTTTCATCG ATAGAGATCC 421 AGAAATGTTC TCAATCTTGC TTTCCCTTTT AAGAACTGGG AATC Predicted gene structure (within gDNA segment 80113 to 78441): Exon 1 79513 79051 ( 463 n); cDNA 1 464 ( 464 n); score: 0.995 MATCH C08SLe0084H03.1- SGN-E287838+ 0.995 463 0.998 C PGS_C08SLe0084H03.1-_SGN-E287838+ (79513 79051) Alignment (genomic DNA sequence = upper lines): AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 79454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAAAGTT TTTTACATTG AAATTTCAAG AATTCATTCC CAAAGCTTGA AAAACACCAT 60 TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 79394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAATCA CACAAAATCA CAAAAGAATG AGTCTTTACA TTGTATTTCA AGAATTCCCA 120 AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 79334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTTGAA ATCACCATTC TTGAAAAAAG TTCCAAAGAA AAAAATATAT AAAAATTGAG 180 TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 79274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTACATT GAATTTCAAG AATTTCCCAA TAAAAGATGC CACCTTTTAT TGGATCTCAT 240 CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 79214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTTTCAT CTGGTTTTTC AAGAAACTCC ATTGATTCAT CTTCAAATAT TGTCACCATT 300 GATGTAGGTG GTCATC-TTT TTCAAACAAC CAAACAAACC CTAAAGCAAT CAGGTTCAAA 79155 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAGGTG GTCATCTTTT TTCAAACAAC CAAACAAACC CTAAAGCAAT CAGGTTCAAA 360 ATCAATACTT TCTGAAATTT CAAATCTTGA TGGTTCCATT CCTTTCATCG ATAGAGATCC 79095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAATACTT TCTGAAATTT CAAATCTTGA TGGTTCCATT CCTTTCATCG ATAGAGATCC 420 AGAAATGTTC TCAATCTTGC TTTCCCTTTT AAGAACTGGG AATC 79051 |||||||||| |||||||||| |||||||||| |||||||||| |||| AGAAATGTTC TCAATCTTGC TTTCCCTTTT AAGAACTGGG AATC 464 hqPGS_C08SLe0084H03.1-_SGN-E287838+ (79513 79051) ******************************************************************************** EST sequence 111 -strand 568 n (File: SGN-E368669-) 1 AGGTTTGCAT TCCTTTAGTA AATCCACCCC ATACTAATAA GCTGCTGTTC ATCTGCCTTA 61 AATTTCAATA CAACCAGCAG CAAATACCGG AAAACTTTTG ATATCAAAAC GTACAAAAAT 121 GACGAGGGTG TTGAAGGGAA TAATGTGCAG CAGGACTGAT AATAGAAATT GATACGAACG 181 AAGGCTGTTT TTTGGGGCCC TTCCTGAACC TAGGATAAAA TAAATAGGGA TGTATTTTAA 241 AAATTACCAT TTGATAAAAC TAGTTTTGCT CTCCCCCCCC TGAAAGTTTT TACATTTAAA 301 TAATAGTTTA CTTTCTTTTT TTGCCTTCTA GCTCCTCTAT GTATAATAAC ATAAATAATT 361 TGTTAAAACC AGGGTAAAAG ATAATGATAG TAATGTTCAT TTTGTTTGAT GTTATAATAT 421 TGAACTGAGA CGAGTTTGAA TAAAGTGACA TTGAATGTGA GAATTCATGG TTGATCCTCC 481 CTTGAGACGA GGTGAATGAA CCTTGGGGGC TGGGTCTTGG GTTTTAAAAA AAAAAAAAAA 541 AAAAAAAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 81857 to 79521): Exon 1 81247 80734 ( 514 n); cDNA 1 513 ( 513 n); score: 0.961 PPA cDNA 526 568 MATCH C08SLe0084H03.1- SGN-E368669- 0.961 514 0.905 C PGS_C08SLe0084H03.1-_SGN-E368669- (81247 80734) Alignment (genomic DNA sequence = upper lines): AGGTTTGCAT TCCTTTAGTA AATCCACACC ATACTAATAA GCTGCTGTTC ATCTGCCTTA 81188 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AGGTTTGCAT TCCTTTAGTA AATCCACCCC ATACTAATAA GCTGCTGTTC ATCTGCCTTA 60 AATTTCAATA CAACCAGCAG CAAATACCGG AAAACTCTTG ATATCAAAAC GTACAAGAAT 81128 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||| ||| AATTTCAATA CAACCAGCAG CAAATACCGG AAAACTTTTG ATATCAAAAC GTACAAAAAT 120 GACGAGGGTG TTGAAGGGAA TGATGTGCAG CAGGACTGAT AATAGAAATT GATACGAACG 81068 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| GACGAGGGTG TTGAAGGGAA TAATGTGCAG CAGGACTGAT AATAGAAATT GATACGAACG 180 AAGGCTGTTT TTTTGGGGCA CTTCCTGAAC CTAGGATAAG ATAGATAGGG ATGTATTTTA 81008 ||||||| || ||||||||| |||||||||| ||||||||| ||| |||||| |||||||||| AAGGCTG-TT TTTTGGGGCC CTTCCTGAAC CTAGGATAAA ATAAATAGGG ATGTATTTTA 239 GAAATTACCA TTTGATAAAA CTAGTTTTGC TCTCCCCTCA CTGAGAGTTT TTACATTTAA 80948 ||||||||| |||||||||| |||||||||| ||||||| | |||| ||||| |||||||||| AAAATTACCA TTTGATAAAA CTAGTTTTGC TCTCCCCCCC CTGAAAGTTT TTACATTTAA 299 CTAATAGTCT ACTTTCTTTT TTTGCCTTCT AGCTCCTCTA TGTATAATAA CATAAATAAT 80888 ||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATAGTTT ACTTTCTTTT TTTGCCTTCT AGCTCCTCTA TGTATAATAA CATAAATAAT 359 TTGTTAAAAG CAGTGTAGAA GATAATGATA GTAATGTTCA TTTTGTTTGA TGTTATAATA 80828 ||||||||| ||| ||| || |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAAAAC CAGGGTAAAA GATAATGATA GTAATGTTCA TTTTGTTTGA TGTTATAATA 419 TTGAACTGAG ACGAGTTTGA ATAGAGTGAC ATTGAATGTG AGAATTCATG GTTGATCCTA 80768 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||| TTGAACTGAG ACGAGTTTGA ATAAAGTGAC ATTGAATGTG AGAATTCATG GTTGATCCTC 479 CCTTGAGACG AGGTGAATGA ACCTTGGAGG CTGG 80734 |||||||||| |||||||||| ||||||| || |||| CCTTGAGACG AGGTGAATGA ACCTTGGGGG CTGG 513 hqPGS_C08SLe0084H03.1-_SGN-E368669- (81247 80734) ******************************************************************************** EST sequence 236 +strand 722 n (File: SGN-E368670+) 1 TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 61 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 121 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 181 ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 241 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 301 CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 361 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 421 AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CTGATAATAG 481 AAATTGATAC GAACGAAGGC TGTTTTTTGG GGCACTTCCT GAACCTAGGA TAAGATAGAT 541 AGGGATGTAT TTTAGAAATT ACCATTTGAT AAAACTAGTT TTGCTCTCCC CTCACTGAGA 601 GTTTTTACAT TTAACTAATA GTCTACTTTC TTTTTTTGCC TTCTAGCTCC TCTATGTATA 661 ATAACAATAA TAATTTGTTA AAACCAGTGT AGAAGATAAT GATAGTAATG TTCATTTTGT 721 TT Predicted gene structure (within gDNA segment 82162 to 80230): Exon 1 81562 80840 ( 723 n); cDNA 1 722 ( 722 n); score: 0.993 MATCH C08SLe0084H03.1- SGN-E368670+ 0.993 723 1.001 C PGS_C08SLe0084H03.1-_SGN-E368670+ (81562 80840) Alignment (genomic DNA sequence = upper lines): TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 81503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 60 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 81443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 120 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 81383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 180 ACTTTGACAA TGTAGACGGG GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 81323 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 240 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 81263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 300 CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 81203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 360 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 81143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 420 AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CTGATAATAG 81083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CTGATAATAG 480 AAATTGATAC GAACGAAGGC TGTTTTTTTG GGGCACTTCC TGAACCTAGG ATAAGATAGA 81023 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| AAATTGATAC GAACGAAGGC TG-TTTTTTG GGGCACTTCC TGAACCTAGG ATAAGATAGA 539 TAGGGATGTA TTTTAGAAAT TACCATTTGA TAAAACTAGT TTTGCTCTCC CCTCACTGAG 80963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGATGTA TTTTAGAAAT TACCATTTGA TAAAACTAGT TTTGCTCTCC CCTCACTGAG 599 AGTTTTTACA TTTAACTAAT AGTCTACTTT CTTTTTTTGC CTTCTAGCTC CTCTATGTAT 80903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTTTACA TTTAACTAAT AGTCTACTTT CTTTTTTTGC CTTCTAGCTC CTCTATGTAT 659 AATAACATAA ATAATTTGTT AAAAGCAGTG TAGAAGATAA TGATAGTAAT GTTCATTTTG 80843 ||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AATAACAATA ATAATTTGTT AAAACCAGTG TAGAAGATAA TGATAGTAAT GTTCATTTTG 719 TTT 80840 ||| TTT 722 hqPGS_C08SLe0084H03.1-_SGN-E368670+ (81562 80840) ******************************************************************************** EST sequence 145 +strand 515 n (File: SGN-E241551+) 1 TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 61 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 121 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 181 ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 241 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 301 CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 361 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 421 AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CTGATAATAG 481 AAATTGATAC GAACGAAGGC TGTTTTTTGG GGCAC Predicted gene structure (within gDNA segment 82162 to 80375): Exon 1 81562 81051 ( 512 n); cDNA 1 512 ( 512 n); score: 0.996 MATCH C08SLe0084H03.1- SGN-E241551+ 0.996 512 0.994 C PGS_C08SLe0084H03.1-_SGN-E241551+ (81562 81051) Alignment (genomic DNA sequence = upper lines): TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 81503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 60 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 81443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 120 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 81383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 180 ACTTTGACAA TGTAGACGGG GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 81323 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 240 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 81263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 300 CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 81203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 360 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 81143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 420 AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CTGATAATAG 81083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CTGATAATAG 480 AAATTGATAC GAACGAAGGC TGTTTTTTTG GG 81051 |||||||||| |||||||||| |||||||| | || AAATTGATAC GAACGAAGGC TGTTTTTTGG GG 512 hqPGS_C08SLe0084H03.1-_SGN-E241551+ (81562 81051) ******************************************************************************** EST sequence 151 +strand 472 n (File: SGN-E228059+) 1 TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 61 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 121 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 181 ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 241 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 301 CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 361 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 421 AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CT Predicted gene structure (within gDNA segment 82162 to 80481): Exon 1 81562 81091 ( 472 n); cDNA 1 472 ( 472 n); score: 0.998 MATCH C08SLe0084H03.1- SGN-E228059+ 0.998 472 1.000 C PGS_C08SLe0084H03.1-_SGN-E228059+ (81562 81091) Alignment (genomic DNA sequence = upper lines): TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 81503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 60 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 81443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 120 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 81383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 180 ACTTTGACAA TGTAGACGGG GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 81323 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 240 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 81263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 300 CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 81203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 360 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 81143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 420 AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CT 81091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AAAACGTACA AGAATGACGA GGGTGTTGAA GGGAATGATG TGCAGCAGGA CT 472 hqPGS_C08SLe0084H03.1-_SGN-E228059+ (81562 81091) ******************************************************************************** EST sequence 171 +strand 440 n (File: SGN-E371838+) 1 TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 61 ACGATCACAG TGGACATGAA CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 121 AGGATGGACA GAGGCAGCAG AAGCACATGT CCATCACTCT TGGATCCTCG AAGGAATTTA 181 ACGTTTGACA CTGTAGACGG AGGATATCCT GATAAAGCTA CTATTGGCTC TGACTGGGGG 241 GCCAACGAGA AAGTTCTTGC AAAGGAGCCC TGCAATAACT GGATCTTTCC TATTTTTTTG 301 GCTGGGGGCA GGTAACAGGT TTGCATTACT TTACCCCATC ACACCATACT AATAAGCTGC 361 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 421 ATAACGTACA AGAATGACGA Predicted gene structure (within gDNA segment 82162 to 80513): Exon 1 81562 81123 ( 440 n); cDNA 1 440 ( 440 n); score: 0.942 MATCH C08SLe0084H03.1- SGN-E371838+ 0.942 440 1.000 C PGS_C08SLe0084H03.1-_SGN-E371838+ (81562 81123) Alignment (genomic DNA sequence = upper lines): TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 81503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 60 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 81443 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATCACAG TGGACATGAA CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 120 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 81383 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AGGATGGACA GAGGCAGCAG AAGCACATGT CCATCACTCT TGGATCCTCG AAGGAATTTA 180 AC-TTTGACA ATGTAGACGG GGGATATCCT GATAAAGCTA CTATTGGCTC TGACTGGTGG 81324 || ||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||||||| || ACGTTTGACA CTGTAGACGG AGGATATCCT GATAAAGCTA CTATTGGCTC TGACTGGGGG 240 GCCAACGAGA AAGTTCTTGG AAAGGAGCCC TGCAATAACT GGATCTTCCC TATGATGCAG 81264 |||||||||| ||||||||| |||||||||| |||||||||| ||||||| || ||| | | GCCAACGAGA AAGTTCTTGC AAAGGAGCCC TGCAATAACT GGATCTTTCC TATTTTTTTG 300 CCTGGTGTCA GCTAACAGGT TTGCATTCCT TTAGTAAATC CACACCATAC TAATAAGCTG 81204 |||| | || | |||||||| ||||||| || ||| || |||||||||| |||||||||| GCTGGGGGCA GGTAACAGGT TTGCATTACT TTACCCCAT- CACACCATAC TAATAAGCTG 359 CTGTTCATCT GCCTTAAATT TCAATACAAC CAGCAGCAAA TACCGGAAAA CTCTTGATAT 81144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCATCT GCCTTAAATT TCAATACAAC CAGCAGCAAA TACCGGAAAA CTCTTGATAT 419 CAAAACGTAC AAGAATGACG A 81123 || ||||||| |||||||||| | CATAACGTAC AAGAATGACG A 440 hqPGS_C08SLe0084H03.1-_SGN-E371838+ (81562 81123) ******************************************************************************** EST sequence 237 +strand 426 n (File: SGN-E237639+) 1 TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 61 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 121 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 181 ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 241 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 301 CTGGGGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 361 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 421 AAAACG Predicted gene structure (within gDNA segment 82162 to 80527): Exon 1 81562 81137 ( 426 n); cDNA 1 426 ( 426 n); score: 0.995 MATCH C08SLe0084H03.1- SGN-E237639+ 0.995 426 1.000 C PGS_C08SLe0084H03.1-_SGN-E237639+ (81562 81137) Alignment (genomic DNA sequence = upper lines): TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 81503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGATAC TGAGCGTAGC ACTAAACGAC AGGAAAACCT GGCTGAAATG TCAAATGCAC 60 ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 81443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATCACAG TGGACATGAG CCTTCCAGAG AAATACACGA GGGATCATCT ACTGACGGAG 120 AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 81383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGGACA GAGGCAGCAG AAGCACAGGT CCATCACTCT TGGATCCTCG AAGGAATTTA 180 ACTTTGACAA TGTAGACGGG GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 81323 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGACAA TGTAGACGGA GGATATCCTG ATAAAGCTAC TATTGGCTCT GACTGGTGGG 240 CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 81263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACGAGAA AGTTCTTGGA AAGGAGCCCT GCAATAACTG GATCTTCCCT ATGATGCAGC 300 CTGGTGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 81203 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGGTCAG CTAACAGGTT TGCATTCCTT TAGTAAATCC ACACCATACT AATAAGCTGC 360 TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 81143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCATCTG CCTTAAATTT CAATACAACC AGCAGCAAAT ACCGGAAAAC TCTTGATATC 420 AAAACG 81137 |||||| AAAACG 426 hqPGS_C08SLe0084H03.1-_SGN-E237639+ (81562 81137) ******************************************************************************** EST sequence 217 +strand 778 n (File: SGN-E332130+) 1 AAAGTTTGTG ATTTTCGATC GGAAAAGTGA GTTCCGGCGA TGCTCTAGAG CTGAGGAGGA 61 GTCGTCGGAG TTTAGGAATT TTGAGGTGAT TCGTTGTGTA AAAGCGAAGA GAAGATGAAT 121 AGAGTGAACG GAGAGCAGAG AGGAGTTGAT AGCACTTTGG AGACGATAAA CGCTGCTGCT 181 ACTGCAATCG CTTCAGTTGA AAATCGTGTT CCTCAAGCCT CGATTCAGAA ACGAAGATGG 241 GGAAGCTGCT GGAGCATGTA CTGGTGTTTT GGCTCTCAGA AACAGACGAA ACGAATTGGA 301 CATGCAGTTT TTATTCCAGA AACAACAGCC TCTGCTGCAG ATAGACCTTC TTCTAATACT 361 TCAAGTCAAG CTCCTTCTAT AGTGCTTCCC TTCATAGCAC CCCCCTCATC TCCTGCATCT 421 TTCTTGCCAT CAGAACCTCC TTCAGCAACC CATTCACCAG TTGGCTCAAA ATGCCTTTCT 481 ATGTCTACAT ATTCTCCCAG TGGACCTGCC TCAATTTTTG CTATTGGGCC CTACGCTCAT 541 GAAACTCAAC TGGTCTCTCC ACCTGTTTTC TCTGCATTCA CTACTGAACC ATCTACTGCT 601 CCATTTACCC CTCCTCCTGA GTCAGTCCAC TTGACTACAC CCTCATCACC TGAGGTACCA 661 TTTGCTAAGC TGCTTGACCC CACTACCAGA AATGTGCTGC TGGTCACAGA TATCCTTTTT 721 GCCAGTATGA ATTTCAGTCA TACCAACTTC AACCAGGGAG TCCAGTCAGT AACTTGAT Predicted gene structure (within gDNA segment 85773 to 81306): Exon 1 85173 84946 ( 228 n); cDNA 1 228 ( 228 n); score: 1.000 Intron 1 84945 82467 (2479 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 82466 81916 ( 551 n); cDNA 229 778 ( 550 n); score: 0.989 MATCH C08SLe0084H03.1- SGN-E332130+ 0.992 779 1.001 C PGS_C08SLe0084H03.1-_SGN-E332130+ (85173 84946,82466 81916) Alignment (genomic DNA sequence = upper lines): AAAGTTTGTG ATTTTCGATC GGAAAAGTGA GTTCCGGCGA TGCTCTAGAG CTGAGGAGGA 85114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTGTG ATTTTCGATC GGAAAAGTGA GTTCCGGCGA TGCTCTAGAG CTGAGGAGGA 60 GTCGTCGGAG TTTAGGAATT TTGAGGTGAT TCGTTGTGTA AAAGCGAAGA GAAGATGAAT 85054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGTCGGAG TTTAGGAATT TTGAGGTGAT TCGTTGTGTA AAAGCGAAGA GAAGATGAAT 120 AGAGTGAACG GAGAGCAGAG AGGAGTTGAT AGCACTTTGG AGACGATAAA CGCTGCTGCT 84994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTGAACG GAGAGCAGAG AGGAGTTGAT AGCACTTTGG AGACGATAAA CGCTGCTGCT 180 ACTGCAATCG CTTCAGTTGA AAATCGTGTT CCTCAAGCCT CGATTCAGGT AAAATTCATT 84934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACTGCAATCG CTTCAGTTGA AAATCGTGTT CCTCAAGCCT CGATTCAG.. .......... 228 TCGATTTGAT TTTTTTTTTT GGAATATATA GATTGTTTTG TGGTATAGTT CGATTTGAAT 84874 .......... .......... .......... .......... .......... .......... 228 CTAGTTACAT TTTTTTAGGA GTTTGAGAAT TATTTTGTGT TTACTTTGAT CTGAATCAGG 84814 .......... .......... .......... .......... .......... .......... 228 TTATAGTTTT GGAGTTTAAC TTTGAGTTGA ATCTGGTTAT AGTTTTTTGT TTCTTCTTTG 84754 .......... .......... .......... .......... .......... .......... 228 TGGAATATGT AGATCGTTTG GGTGATTTAT TTTTATTTGA ATCTGGTTAC AGTTTTTTTC 84694 .......... .......... .......... .......... .......... .......... 228 TTTCTTTTGT GGAATTTGTA GATCGTGAAT GATATATTTG AGCTCAGAGT TGACTTAATT 84634 .......... .......... .......... .......... .......... .......... 228 GAAGCTTTTA GCTAGAATTG CAAGTGAGAT TCATAGATCA TGGAACGTTG TGTATAAGTT 84574 .......... .......... .......... .......... .......... .......... 228 TTGTTCATTG CATTAAGAGC AGAGATGTGT GCTACGTTAT ACGTAGGGTG ATCTTGCATA 84514 .......... .......... .......... .......... .......... .......... 228 TTTCATTTTG GATTGGAAAT TGCTTGGTAT CATCCTGGTG TGAGATTGTA ATTGTTATGG 84454 .......... .......... .......... .......... .......... .......... 228 ATGCTTTCTC CGCTGTCTAG ATTTGGGATA AATTTGCACT TTTTCATCCT GTATAGCAAG 84394 .......... .......... .......... .......... .......... .......... 228 TAGTATAACT TTTTGATAAA GTTAGTGTTA TCATGAGAAA GTTAGTGTTA GTAATTTTGT 84334 .......... .......... .......... .......... .......... .......... 228 GCCCAGTGGG AAATCAGTGT GATGGTAAGT CAGGTAATTC CCAGGAAGTT GGATAATATG 84274 .......... .......... .......... .......... .......... .......... 228 CTTCACTGCT GCTGATACGT GTGTTGTCAA TGCGTGTACA TATGACTTGT TTGACCAAGT 84214 .......... .......... .......... .......... .......... .......... 228 GAGTGAGAAA GTAGGGACTC AGTGAGATGG TTGGAAATGC TTGAATTATG TTTGAAGTGA 84154 .......... .......... .......... .......... .......... .......... 228 GGAAGAAAAG GACAAGGAGA TAAAGCAATG GATGTTTTTA ACCTCTTCGA TGAACCAGTA 84094 .......... .......... .......... .......... .......... .......... 228 AAGGCTACTC GCTGGTGTGA GAAACAAGAG TTCTAGTTAA GACAGTGATG TAATACATCA 84034 .......... .......... .......... .......... .......... .......... 228 ATCATTTGCT TTCTTTCTTT TCTGAATCGA TCCAAAATCT AGAGGTGGTG CCACTTTGCT 83974 .......... .......... .......... .......... .......... .......... 228 TCTTATCTAA GCATCTGCAG CCATGTCTAA TTGGAGTGAT TTTCTGAATT TTTTCCCAAA 83914 .......... .......... .......... .......... .......... .......... 228 TGCTATCTAG CCAAAAGCGT TTTAGAAGTT ATTCTTTCTT TCTCAAATGG ATGCAGTAAC 83854 .......... .......... .......... .......... .......... .......... 228 GCAATACTCT GTTATGCGTT TCATAGGGCT GACCAATTGA GTTATTTGTC GTTTTCAAGT 83794 .......... .......... .......... .......... .......... .......... 228 TAGCATGATA GGATTTCAGA AGTTCCAGAT TCAACAGATG CAGATATCAT TTTATTCCAA 83734 .......... .......... .......... .......... .......... .......... 228 AATAATGAAT TTGCTTGACT CATCTTACCA TCTAATATAA CAAACATTAA TTTTTATCTT 83674 .......... .......... .......... .......... .......... .......... 228 TGAAATAAAA AAGAAAACAT TTCTCATGTA AATTATCGAT TGCTATGTTA TTTATGCTTT 83614 .......... .......... .......... .......... .......... .......... 228 TGACTCAGAA AGAGTGATGT AACTTGTAAA TGAATCAGAA AACATTTTGG AACTTTTGGA 83554 .......... .......... .......... .......... .......... .......... 228 CTCTCTAAAC TGGAAGGAGT GAATTCCAGA CTCATTATAG ATAAACGAGT ACCTTCTTGA 83494 .......... .......... .......... .......... .......... .......... 228 TACTATTGTT AAAGTTAAAA CAAGATTTTA TTTATTAAGA AGGATACTGA ATTTTAGCTG 83434 .......... .......... .......... .......... .......... .......... 228 TCAGTTCAGA GTGCCCACTG CTTTTGGTCT TGGATCCGTA CTCTAGAGTG TCCTATGATA 83374 .......... .......... .......... .......... .......... .......... 228 CAATTAATTG CTTCATTTGT ACATCTAAAT ATGTTCCAAA AGGCTAAATG TTTTTTTTTT 83314 .......... .......... .......... .......... .......... .......... 228 TGATATCCAA ACTCTTCCCA TTAATTCAAT AGATCAACCC TAGATCTTCC CTAAATGAGG 83254 .......... .......... .......... .......... .......... .......... 228 CTGAAAGTGA AAGCCGTTTT TCTGTTTCAG TCGAAGTGAA GGAGCGATTT AATAATACCT 83194 .......... .......... .......... .......... .......... .......... 228 CCTAGGCCAA GTGAAGAGGC CAAAGCACAC GATTCCCGTG AGTGGCCTCT GTTTGAAACA 83134 .......... .......... .......... .......... .......... .......... 228 GATGTTTATG ATTGATCTTA TCATTTTAGA ATGTGCATGA TACTTCAACA GTGTCCCCCA 83074 .......... .......... .......... .......... .......... .......... 228 CCCCCACTCT TCTTTTTCTT GATATATTGC GTATGGGAAA TGGGGAAAGT ATTGGGAGGA 83014 .......... .......... .......... .......... .......... .......... 228 GGTTTGTGTG AGAATTGAAT CTTTTACCTT AAGGATGCAA GGTAGAACAT CACCAGGGAA 82954 .......... .......... .......... .......... .......... .......... 228 GTCTTCCTGT ATCCCCTTCA TTTTGATTGA CACTCCTGTG ACATTTGTGA ATGCAGCTGT 82894 .......... .......... .......... .......... .......... .......... 228 TTTTATTCCT TAACAAGGTT ACAAATAATT TCCCTCTGCT CTCTGAACAT TACTCTGGAC 82834 .......... .......... .......... .......... .......... .......... 228 TAGATCATCT GTCCTCCAAT TCTGTTTCAC TGTTCAATTA TATGGACTAA CATTTCCAAG 82774 .......... .......... .......... .......... .......... .......... 228 GTTACTTGTG TGTATTCTTT GCTTTTATTT CCTTGACTGC TCGATTATAA GAAACAAGGA 82714 .......... .......... .......... .......... .......... .......... 228 AATAAGTTGG TTTAACAGAA ACGACGATGG TTTATTTACT TGTGTGTCTT TGTTCTAAGA 82654 .......... .......... .......... .......... .......... .......... 228 CAGAATTTAG AAACAAGATT GTTTTATTTT ATTTAATTTT CTGTCCTCTC TGCTCTCGGG 82594 .......... .......... .......... .......... .......... .......... 228 TCTTATTCTA AAGAAACAAT TGCTTTGTGC GTTAGCATCT TGATGATGCT TTGAACTTAA 82534 .......... .......... .......... .......... .......... .......... 228 CTGGGATTTT GTTGCTCATT TTATGTGAAG TTCTCATCAT CTCTTGCACT TTAAATTGGT 82474 .......... .......... .......... .......... .......... .......... 228 TTAACAGAAA CGAAGATGGG GAAGCTGCTG GAGCATGTAC TGGTGTTTTG GCTCTCAGAA 82414 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AAA CGAAGATGGG GAAGCTGCTG GAGCATGTAC TGGTGTTTTG GCTCTCAGAA 281 ACAGACGAAA CGAATTGGAC ATGCAGTTTT TATTCCAGAA ACAACAGCCT CTGCTGCAGA 82354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGACGAAA CGAATTGGAC ATGCAGTTTT TATTCCAGAA ACAACAGCCT CTGCTGCAGA 341 TAGACCTTCT TCTAATACTT CAAGTCAAGC TCCTTCTATA GTGCTTCCCT TCATAGCACC 82294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGACCTTCT TCTAATACTT CAAGTCAAGC TCCTTCTATA GTGCTTCCCT TCATAGCACC 401 CCCCTCATCT CCTGCATCTT TCTTGCCATC AGAACCTCCT TCAGCAACCC ATTCACCAGT 82234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCTCATCT CCTGCATCTT TCTTGCCATC AGAACCTCCT TCAGCAACCC ATTCACCAGT 461 TGGCTCAAAA TGCCTTTCTA TGTCTACATA TTCTCCCAGT GGACCTGCCT CAATTTTTGC 82174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTCAAAA TGCCTTTCTA TGTCTACATA TTCTCCCAGT GGACCTGCCT CAATTTTTGC 521 TATTGGGCCC TACGCTCATG AAACTCAACT GGTCTCTCCA CCTGTTTTCT CTGCATTCAC 82114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGGCCC TACGCTCATG AAACTCAACT GGTCTCTCCA CCTGTTTTCT CTGCATTCAC 581 TACTGAACCA TCTACTGCTC CATTTACCCC TCCTCCTGAG TCAGTCCACT TGACTACACC 82054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGAACCA TCTACTGCTC CATTTACCCC TCCTCCTGAG TCAGTCCACT TGACTACACC 641 CTCATCACCT GAGGTACCAT TTGCTAAGCT GCTTGACCCC AACTACCAGA ATGTTGCTGC 81994 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | |||||| CTCATCACCT GAGGTACCAT TTGCTAAGCT GCTTGACCCC -ACTACCAGA AATGTGCTGC 700 TGGTCACAGA TATCCTTTTG CCCAGTATGA ATTTCAGTCA TACCAACTTC AACCAGGGAG 81934 |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGGTCACAGA TATCCTTTTT GCCAGTATGA ATTTCAGTCA TACCAACTTC AACCAGGGAG 760 TCCAGTCAGT AACTTGAT 81916 |||||||||| |||||||| TCCAGTCAGT AACTTGAT 778 hqPGS_C08SLe0084H03.1-_SGN-E332130+ (85173 84946,82466 81916) ******************************************************************************** EST sequence 199 +strand 453 n (File: SGN-E336465+) 1 TTGTGAGGTG TGTGGAAAAG AAGCCAACTA TGATGATGAG AACTGGATCA GTGTCTCTCC 61 AGGATACTGA GCGTAGCACT AAACGACAGG AAAACCTGGC TGAAATGTCA AATGCACACG 121 ATCACAGTGG ACATGAGCCT TCCAGAGAAA TACACGAGGG ATCATCTACT GACGGAGAGG 181 ATGGACAGAG GCAGCAGAAG CACAGGTCCA TCACTCTTGG ATCCTCGAAG GAATTTAACT 241 TTGACAATGT AGACGGAGGA TATCCTGATA AAGCTACTAT TGGCTCTGAC TGGTGGGCCA 301 ACGAGAAAGT TCTTGGAAAG GAGCCCTGCA ATAACTGGAT CTTCCCTATG ATGCAGCCTG 361 GTGTCAGCTA ACAGGTCTGC ATTCCTTTAG TAAATCCACA CCATACTAAT AAGCTGCTGA 421 TCATCTGCCT TAAATTTCAA TACAACCAGC AGC Predicted gene structure (within gDNA segment 82219 to 80557): Exon 1 81619 81167 ( 453 n); cDNA 1 453 ( 453 n); score: 0.993 MATCH C08SLe0084H03.1- SGN-E336465+ 0.993 453 1.000 C PGS_C08SLe0084H03.1-_SGN-E336465+ (81619 81167) Alignment (genomic DNA sequence = upper lines): TTGTGAGGTG TGTGGAAAAG AAGCCAACTA TGATGATGAG AACTGGATCA GTGTCTCTCC 81560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGAGGTG TGTGGAAAAG AAGCCAACTA TGATGATGAG AACTGGATCA GTGTCTCTCC 60 AGGATACTGA GCGTAGCACT AAACGACAGG AAAACCTGGC TGAAATGTCA AATGCACACG 81500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATACTGA GCGTAGCACT AAACGACAGG AAAACCTGGC TGAAATGTCA AATGCACACG 120 ATCACAGTGG ACATGAGCCT TCCAGAGAAA TACACGAGGG ATCATCTACT GACGGAGAGG 81440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAGTGG ACATGAGCCT TCCAGAGAAA TACACGAGGG ATCATCTACT GACGGAGAGG 180 ATGGACAGAG GCAGCAGAAG CACAGGTCCA TCACTCTTGG ATCCTCGAAG GAATTTAACT 81380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGACAGAG GCAGCAGAAG CACAGGTCCA TCACTCTTGG ATCCTCGAAG GAATTTAACT 240 TTGACAATGT AGACGGGGGA TATCCTGATA AAGCTACTAT TGGCTCTGAC TGGTGGGCCA 81320 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACAATGT AGACGGAGGA TATCCTGATA AAGCTACTAT TGGCTCTGAC TGGTGGGCCA 300 ACGAGAAAGT TCTTGGAAAG GAGCCCTGCA ATAACTGGAT CTTCCCTATG ATGCAGCCTG 81260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGAAAGT TCTTGGAAAG GAGCCCTGCA ATAACTGGAT CTTCCCTATG ATGCAGCCTG 360 GTGTCAGCTA ACAGGTTTGC ATTCCTTTAG TAAATCCACA CCATACTAAT AAGCTGCTGT 81200 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| GTGTCAGCTA ACAGGTCTGC ATTCCTTTAG TAAATCCACA CCATACTAAT AAGCTGCTGA 420 TCATCTGCCT TAAATTTCAA TACAACCAGC AGC 81167 |||||||||| |||||||||| |||||||||| ||| TCATCTGCCT TAAATTTCAA TACAACCAGC AGC 453 hqPGS_C08SLe0084H03.1-_SGN-E336465+ (81619 81167) ******************************************************************************** EST sequence 231 +strand 748 n (File: SGN-E333446+) 1 TTACCGGAAA AAGTTTGTGA TTTTCGATCG GAAAAGTGAG TTCCGGCGAT GCTCTAGAGC 61 TGAGGAGGAG TCGTCGGAGT TTAGGAATTT TGAGGTGATT CGTTGTGTAA AAGCGAAGAG 121 AAGATGAATA GAGTGAACGG AGAGCAGAGA GGAGTTGATA GCACTTTGGA GACGATAAAC 181 GCTGCTGCTA CTGCAATCGC TTCAGTTGAA AATCGTGTTC CTCAAGCCTC GATTCAGAAA 241 CGAAGATGGG GAAGCTGCTG GAGCATGTAC TGGTGTTTTG GCTCTCAGAA ACAGACGAAA 301 CGAATTGGAC ATGCAGTTTT TATTCCAGAA ACAACAGCCT CTGCTGCAGA TAGACCTTCT 361 TCTAATACTT CAAGTCAAGC TCCTTCTATA GTGCTTCCCT TCATAGCACC CCCCTCATCT 421 CCTGCATCTT TCTTGCCATC AGAACCTCCT TCAGCAACCC ATTCACCAGT TGGCTCAAAA 481 TGCCTTTCTA TGTCTACATA TTCTCCCAGT GGACCTGCCT CAATTTTTGC TATTGGGCCC 541 TACGCTCATG AAACTCAACT GGTCTCTCCA CCTGTTTTCT CTGCATTCAC TACTGAACCA 601 TCTACTGCTC CATTTACCCC TCCTCCTGAG TCAGTCCACT TGACTACACC CTCATCACCT 661 GAGGTACCAT TTGCNTAGCT GCTTGACCCA ACTACCAGAA TGTTGCTGCT GGTCACAGAT 721 ATCCTTTTGC CCAGTATGAA TTTCAGTC Predicted gene structure (within gDNA segment 85782 to 81345): Exon 1 85182 84946 ( 237 n); cDNA 1 237 ( 237 n); score: 1.000 Intron 1 84945 82467 (2479 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 82466 81955 ( 512 n); cDNA 238 748 ( 511 n); score: 0.994 MATCH C08SLe0084H03.1- SGN-E333446+ 0.996 749 1.001 C PGS_C08SLe0084H03.1-_SGN-E333446+ (85182 84946,82466 81955) Alignment (genomic DNA sequence = upper lines): TTACCGGAAA AAGTTTGTGA TTTTCGATCG GAAAAGTGAG TTCCGGCGAT GCTCTAGAGC 85123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGGAAA AAGTTTGTGA TTTTCGATCG GAAAAGTGAG TTCCGGCGAT GCTCTAGAGC 60 TGAGGAGGAG TCGTCGGAGT TTAGGAATTT TGAGGTGATT CGTTGTGTAA AAGCGAAGAG 85063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGAGGAG TCGTCGGAGT TTAGGAATTT TGAGGTGATT CGTTGTGTAA AAGCGAAGAG 120 AAGATGAATA GAGTGAACGG AGAGCAGAGA GGAGTTGATA GCACTTTGGA GACGATAAAC 85003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGAATA GAGTGAACGG AGAGCAGAGA GGAGTTGATA GCACTTTGGA GACGATAAAC 180 GCTGCTGCTA CTGCAATCGC TTCAGTTGAA AATCGTGTTC CTCAAGCCTC GATTCAGGTA 84943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCTGCTGCTA CTGCAATCGC TTCAGTTGAA AATCGTGTTC CTCAAGCCTC GATTCAG... 237 AAATTCATTT CGATTTGATT TTTTTTTTTG GAATATATAG ATTGTTTTGT GGTATAGTTC 84883 .......... .......... .......... .......... .......... .......... 237 GATTTGAATC TAGTTACATT TTTTTAGGAG TTTGAGAATT ATTTTGTGTT TACTTTGATC 84823 .......... .......... .......... .......... .......... .......... 237 TGAATCAGGT TATAGTTTTG GAGTTTAACT TTGAGTTGAA TCTGGTTATA GTTTTTTGTT 84763 .......... .......... .......... .......... .......... .......... 237 TCTTCTTTGT GGAATATGTA GATCGTTTGG GTGATTTATT TTTATTTGAA TCTGGTTACA 84703 .......... .......... .......... .......... .......... .......... 237 GTTTTTTTCT TTCTTTTGTG GAATTTGTAG ATCGTGAATG ATATATTTGA GCTCAGAGTT 84643 .......... .......... .......... .......... .......... .......... 237 GACTTAATTG AAGCTTTTAG CTAGAATTGC AAGTGAGATT CATAGATCAT GGAACGTTGT 84583 .......... .......... .......... .......... .......... .......... 237 GTATAAGTTT TGTTCATTGC ATTAAGAGCA GAGATGTGTG CTACGTTATA CGTAGGGTGA 84523 .......... .......... .......... .......... .......... .......... 237 TCTTGCATAT TTCATTTTGG ATTGGAAATT GCTTGGTATC ATCCTGGTGT GAGATTGTAA 84463 .......... .......... .......... .......... .......... .......... 237 TTGTTATGGA TGCTTTCTCC GCTGTCTAGA TTTGGGATAA ATTTGCACTT TTTCATCCTG 84403 .......... .......... .......... .......... .......... .......... 237 TATAGCAAGT AGTATAACTT TTTGATAAAG TTAGTGTTAT CATGAGAAAG TTAGTGTTAG 84343 .......... .......... .......... .......... .......... .......... 237 TAATTTTGTG CCCAGTGGGA AATCAGTGTG ATGGTAAGTC AGGTAATTCC CAGGAAGTTG 84283 .......... .......... .......... .......... .......... .......... 237 GATAATATGC TTCACTGCTG CTGATACGTG TGTTGTCAAT GCGTGTACAT ATGACTTGTT 84223 .......... .......... .......... .......... .......... .......... 237 TGACCAAGTG AGTGAGAAAG TAGGGACTCA GTGAGATGGT TGGAAATGCT TGAATTATGT 84163 .......... .......... .......... .......... .......... .......... 237 TTGAAGTGAG GAAGAAAAGG ACAAGGAGAT AAAGCAATGG ATGTTTTTAA CCTCTTCGAT 84103 .......... .......... .......... .......... .......... .......... 237 GAACCAGTAA AGGCTACTCG CTGGTGTGAG AAACAAGAGT TCTAGTTAAG ACAGTGATGT 84043 .......... .......... .......... .......... .......... .......... 237 AATACATCAA TCATTTGCTT TCTTTCTTTT CTGAATCGAT CCAAAATCTA GAGGTGGTGC 83983 .......... .......... .......... .......... .......... .......... 237 CACTTTGCTT CTTATCTAAG CATCTGCAGC CATGTCTAAT TGGAGTGATT TTCTGAATTT 83923 .......... .......... .......... .......... .......... .......... 237 TTTCCCAAAT GCTATCTAGC CAAAAGCGTT TTAGAAGTTA TTCTTTCTTT CTCAAATGGA 83863 .......... .......... .......... .......... .......... .......... 237 TGCAGTAACG CAATACTCTG TTATGCGTTT CATAGGGCTG ACCAATTGAG TTATTTGTCG 83803 .......... .......... .......... .......... .......... .......... 237 TTTTCAAGTT AGCATGATAG GATTTCAGAA GTTCCAGATT CAACAGATGC AGATATCATT 83743 .......... .......... .......... .......... .......... .......... 237 TTATTCCAAA ATAATGAATT TGCTTGACTC ATCTTACCAT CTAATATAAC AAACATTAAT 83683 .......... .......... .......... .......... .......... .......... 237 TTTTATCTTT GAAATAAAAA AGAAAACATT TCTCATGTAA ATTATCGATT GCTATGTTAT 83623 .......... .......... .......... .......... .......... .......... 237 TTATGCTTTT GACTCAGAAA GAGTGATGTA ACTTGTAAAT GAATCAGAAA ACATTTTGGA 83563 .......... .......... .......... .......... .......... .......... 237 ACTTTTGGAC TCTCTAAACT GGAAGGAGTG AATTCCAGAC TCATTATAGA TAAACGAGTA 83503 .......... .......... .......... .......... .......... .......... 237 CCTTCTTGAT ACTATTGTTA AAGTTAAAAC AAGATTTTAT TTATTAAGAA GGATACTGAA 83443 .......... .......... .......... .......... .......... .......... 237 TTTTAGCTGT CAGTTCAGAG TGCCCACTGC TTTTGGTCTT GGATCCGTAC TCTAGAGTGT 83383 .......... .......... .......... .......... .......... .......... 237 CCTATGATAC AATTAATTGC TTCATTTGTA CATCTAAATA TGTTCCAAAA GGCTAAATGT 83323 .......... .......... .......... .......... .......... .......... 237 TTTTTTTTTT GATATCCAAA CTCTTCCCAT TAATTCAATA GATCAACCCT AGATCTTCCC 83263 .......... .......... .......... .......... .......... .......... 237 TAAATGAGGC TGAAAGTGAA AGCCGTTTTT CTGTTTCAGT CGAAGTGAAG GAGCGATTTA 83203 .......... .......... .......... .......... .......... .......... 237 ATAATACCTC CTAGGCCAAG TGAAGAGGCC AAAGCACACG ATTCCCGTGA GTGGCCTCTG 83143 .......... .......... .......... .......... .......... .......... 237 TTTGAAACAG ATGTTTATGA TTGATCTTAT CATTTTAGAA TGTGCATGAT ACTTCAACAG 83083 .......... .......... .......... .......... .......... .......... 237 TGTCCCCCAC CCCCACTCTT CTTTTTCTTG ATATATTGCG TATGGGAAAT GGGGAAAGTA 83023 .......... .......... .......... .......... .......... .......... 237 TTGGGAGGAG GTTTGTGTGA GAATTGAATC TTTTACCTTA AGGATGCAAG GTAGAACATC 82963 .......... .......... .......... .......... .......... .......... 237 ACCAGGGAAG TCTTCCTGTA TCCCCTTCAT TTTGATTGAC ACTCCTGTGA CATTTGTGAA 82903 .......... .......... .......... .......... .......... .......... 237 TGCAGCTGTT TTTATTCCTT AACAAGGTTA CAAATAATTT CCCTCTGCTC TCTGAACATT 82843 .......... .......... .......... .......... .......... .......... 237 ACTCTGGACT AGATCATCTG TCCTCCAATT CTGTTTCACT GTTCAATTAT ATGGACTAAC 82783 .......... .......... .......... .......... .......... .......... 237 ATTTCCAAGG TTACTTGTGT GTATTCTTTG CTTTTATTTC CTTGACTGCT CGATTATAAG 82723 .......... .......... .......... .......... .......... .......... 237 AAACAAGGAA ATAAGTTGGT TTAACAGAAA CGACGATGGT TTATTTACTT GTGTGTCTTT 82663 .......... .......... .......... .......... .......... .......... 237 GTTCTAAGAC AGAATTTAGA AACAAGATTG TTTTATTTTA TTTAATTTTC TGTCCTCTCT 82603 .......... .......... .......... .......... .......... .......... 237 GCTCTCGGGT CTTATTCTAA AGAAACAATT GCTTTGTGCG TTAGCATCTT GATGATGCTT 82543 .......... .......... .......... .......... .......... .......... 237 TGAACTTAAC TGGGATTTTG TTGCTCATTT TATGTGAAGT TCTCATCATC TCTTGCACTT 82483 .......... .......... .......... .......... .......... .......... 237 TAAATTGGTT TAACAGAAAC GAAGATGGGG AAGCTGCTGG AGCATGTACT GGTGTTTTGG 82423 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AAAC GAAGATGGGG AAGCTGCTGG AGCATGTACT GGTGTTTTGG 281 CTCTCAGAAA CAGACGAAAC GAATTGGACA TGCAGTTTTT ATTCCAGAAA CAACAGCCTC 82363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCAGAAA CAGACGAAAC GAATTGGACA TGCAGTTTTT ATTCCAGAAA CAACAGCCTC 341 TGCTGCAGAT AGACCTTCTT CTAATACTTC AAGTCAAGCT CCTTCTATAG TGCTTCCCTT 82303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGCAGAT AGACCTTCTT CTAATACTTC AAGTCAAGCT CCTTCTATAG TGCTTCCCTT 401 CATAGCACCC CCCTCATCTC CTGCATCTTT CTTGCCATCA GAACCTCCTT CAGCAACCCA 82243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGCACCC CCCTCATCTC CTGCATCTTT CTTGCCATCA GAACCTCCTT CAGCAACCCA 461 TTCACCAGTT GGCTCAAAAT GCCTTTCTAT GTCTACATAT TCTCCCAGTG GACCTGCCTC 82183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACCAGTT GGCTCAAAAT GCCTTTCTAT GTCTACATAT TCTCCCAGTG GACCTGCCTC 521 AATTTTTGCT ATTGGGCCCT ACGCTCATGA AACTCAACTG GTCTCTCCAC CTGTTTTCTC 82123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTTGCT ATTGGGCCCT ACGCTCATGA AACTCAACTG GTCTCTCCAC CTGTTTTCTC 581 TGCATTCACT ACTGAACCAT CTACTGCTCC ATTTACCCCT CCTCCTGAGT CAGTCCACTT 82063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATTCACT ACTGAACCAT CTACTGCTCC ATTTACCCCT CCTCCTGAGT CAGTCCACTT 641 GACTACACCC TCATCACCTG AGGTACCATT TGCTAAGCTG CTTGACCCCA ACTACCAGAA 82003 |||||||||| |||||||||| |||||||||| ||| ||||| ||||| |||| |||||||||| GACTACACCC TCATCACCTG AGGTACCATT TGCNTAGCTG CTTGA-CCCA ACTACCAGAA 700 TGTTGCTGCT GGTCACAGAT ATCCTTTTGC CCAGTATGAA TTTCAGTC 81955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGTTGCTGCT GGTCACAGAT ATCCTTTTGC CCAGTATGAA TTTCAGTC 748 hqPGS_C08SLe0084H03.1-_SGN-E333446+ (85182 84946,82466 81955) ******************************************************************************** EST sequence 230 +strand 728 n (File: SGN-E333399+) 1 TTACCGGAAA AAGTTTGTGA TTTTCGATCG GAAAAGTGAG TTCCGGCGAT GCTCTAGAGC 61 TGAGGAGGAG TCGTCGGAGT TTAGGAATTT TGAGGTGATT CGTTGTGTAA AAGCGAAGAG 121 AAGATGAATA GAGTGAACGG AGAGCAGAGA GGAGTTGATA GCACTTTGGA GACGATAAAC 181 GCTGCTGCTA CTGCAATCGC TTCAGTTGAA AATCGTGTTC CTCAAGCCTC GATTCAGAAA 241 CGAAGATGGG GAAGCTGCTG GAGCATGTAC TGGTGTTTTG GCTCTCAGAA ACAGACGAAA 301 CGAATTGGAC ATGCAGTTTT TATTCCAGAA ACAACAGCCT CTGCTGCAGA TAGACCTTCT 361 TCTAATACTT CAAGTCAAGC TCCTTCTATA GTGCTTCCCT TCATAGCACC CCCCTCATCT 421 CCTGCATCTT TCTTGCCATC AGAACCTCCT TCAGCAACCC ATTCACCAGT TGGCTCAAAA 481 TGCCTTTCTA TGTCTACATA TTCTCCCAGT GGACCTGCCT CAATTTTTGC TATTGGGCCC 541 TACGCTCATG AAACTCAACT GGTCTCTCCA CCTGTTTTCT CTGCATTCAC TACTGAACCA 601 TCTACTGCTC CATTTACCCC TCCTCCTGAG TCAGTCCACT TGACTACACC CTCATCACCT 661 GAGGTACCAT TTGCNTAGCT GCTTGACCCC CACTACCAGA ATGTTGCTGC TGGTCACAGA 721 TATCCTTT Predicted gene structure (within gDNA segment 85782 to 81366): Exon 1 85182 84946 ( 237 n); cDNA 1 237 ( 237 n); score: 1.000 Intron 1 84945 82467 (2479 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 82466 81976 ( 491 n); cDNA 238 728 ( 491 n); score: 0.994 MATCH C08SLe0084H03.1- SGN-E333399+ 0.996 728 1.000 C PGS_C08SLe0084H03.1-_SGN-E333399+ (85182 84946,82466 81976) Alignment (genomic DNA sequence = upper lines): TTACCGGAAA AAGTTTGTGA TTTTCGATCG GAAAAGTGAG TTCCGGCGAT GCTCTAGAGC 85123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGGAAA AAGTTTGTGA TTTTCGATCG GAAAAGTGAG TTCCGGCGAT GCTCTAGAGC 60 TGAGGAGGAG TCGTCGGAGT TTAGGAATTT TGAGGTGATT CGTTGTGTAA AAGCGAAGAG 85063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGAGGAG TCGTCGGAGT TTAGGAATTT TGAGGTGATT CGTTGTGTAA AAGCGAAGAG 120 AAGATGAATA GAGTGAACGG AGAGCAGAGA GGAGTTGATA GCACTTTGGA GACGATAAAC 85003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGAATA GAGTGAACGG AGAGCAGAGA GGAGTTGATA GCACTTTGGA GACGATAAAC 180 GCTGCTGCTA CTGCAATCGC TTCAGTTGAA AATCGTGTTC CTCAAGCCTC GATTCAGGTA 84943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCTGCTGCTA CTGCAATCGC TTCAGTTGAA AATCGTGTTC CTCAAGCCTC GATTCAG... 237 AAATTCATTT CGATTTGATT TTTTTTTTTG GAATATATAG ATTGTTTTGT GGTATAGTTC 84883 .......... .......... .......... .......... .......... .......... 237 GATTTGAATC TAGTTACATT TTTTTAGGAG TTTGAGAATT ATTTTGTGTT TACTTTGATC 84823 .......... .......... .......... .......... .......... .......... 237 TGAATCAGGT TATAGTTTTG GAGTTTAACT TTGAGTTGAA TCTGGTTATA GTTTTTTGTT 84763 .......... .......... .......... .......... .......... .......... 237 TCTTCTTTGT GGAATATGTA GATCGTTTGG GTGATTTATT TTTATTTGAA TCTGGTTACA 84703 .......... .......... .......... .......... .......... .......... 237 GTTTTTTTCT TTCTTTTGTG GAATTTGTAG ATCGTGAATG ATATATTTGA GCTCAGAGTT 84643 .......... .......... .......... .......... .......... .......... 237 GACTTAATTG AAGCTTTTAG CTAGAATTGC AAGTGAGATT CATAGATCAT GGAACGTTGT 84583 .......... .......... .......... .......... .......... .......... 237 GTATAAGTTT TGTTCATTGC ATTAAGAGCA GAGATGTGTG CTACGTTATA CGTAGGGTGA 84523 .......... .......... .......... .......... .......... .......... 237 TCTTGCATAT TTCATTTTGG ATTGGAAATT GCTTGGTATC ATCCTGGTGT GAGATTGTAA 84463 .......... .......... .......... .......... .......... .......... 237 TTGTTATGGA TGCTTTCTCC GCTGTCTAGA TTTGGGATAA ATTTGCACTT TTTCATCCTG 84403 .......... .......... .......... .......... .......... .......... 237 TATAGCAAGT AGTATAACTT TTTGATAAAG TTAGTGTTAT CATGAGAAAG TTAGTGTTAG 84343 .......... .......... .......... .......... .......... .......... 237 TAATTTTGTG CCCAGTGGGA AATCAGTGTG ATGGTAAGTC AGGTAATTCC CAGGAAGTTG 84283 .......... .......... .......... .......... .......... .......... 237 GATAATATGC TTCACTGCTG CTGATACGTG TGTTGTCAAT GCGTGTACAT ATGACTTGTT 84223 .......... .......... .......... .......... .......... .......... 237 TGACCAAGTG AGTGAGAAAG TAGGGACTCA GTGAGATGGT TGGAAATGCT TGAATTATGT 84163 .......... .......... .......... .......... .......... .......... 237 TTGAAGTGAG GAAGAAAAGG ACAAGGAGAT AAAGCAATGG ATGTTTTTAA CCTCTTCGAT 84103 .......... .......... .......... .......... .......... .......... 237 GAACCAGTAA AGGCTACTCG CTGGTGTGAG AAACAAGAGT TCTAGTTAAG ACAGTGATGT 84043 .......... .......... .......... .......... .......... .......... 237 AATACATCAA TCATTTGCTT TCTTTCTTTT CTGAATCGAT CCAAAATCTA GAGGTGGTGC 83983 .......... .......... .......... .......... .......... .......... 237 CACTTTGCTT CTTATCTAAG CATCTGCAGC CATGTCTAAT TGGAGTGATT TTCTGAATTT 83923 .......... .......... .......... .......... .......... .......... 237 TTTCCCAAAT GCTATCTAGC CAAAAGCGTT TTAGAAGTTA TTCTTTCTTT CTCAAATGGA 83863 .......... .......... .......... .......... .......... .......... 237 TGCAGTAACG CAATACTCTG TTATGCGTTT CATAGGGCTG ACCAATTGAG TTATTTGTCG 83803 .......... .......... .......... .......... .......... .......... 237 TTTTCAAGTT AGCATGATAG GATTTCAGAA GTTCCAGATT CAACAGATGC AGATATCATT 83743 .......... .......... .......... .......... .......... .......... 237 TTATTCCAAA ATAATGAATT TGCTTGACTC ATCTTACCAT CTAATATAAC AAACATTAAT 83683 .......... .......... .......... .......... .......... .......... 237 TTTTATCTTT GAAATAAAAA AGAAAACATT TCTCATGTAA ATTATCGATT GCTATGTTAT 83623 .......... .......... .......... .......... .......... .......... 237 TTATGCTTTT GACTCAGAAA GAGTGATGTA ACTTGTAAAT GAATCAGAAA ACATTTTGGA 83563 .......... .......... .......... .......... .......... .......... 237 ACTTTTGGAC TCTCTAAACT GGAAGGAGTG AATTCCAGAC TCATTATAGA TAAACGAGTA 83503 .......... .......... .......... .......... .......... .......... 237 CCTTCTTGAT ACTATTGTTA AAGTTAAAAC AAGATTTTAT TTATTAAGAA GGATACTGAA 83443 .......... .......... .......... .......... .......... .......... 237 TTTTAGCTGT CAGTTCAGAG TGCCCACTGC TTTTGGTCTT GGATCCGTAC TCTAGAGTGT 83383 .......... .......... .......... .......... .......... .......... 237 CCTATGATAC AATTAATTGC TTCATTTGTA CATCTAAATA TGTTCCAAAA GGCTAAATGT 83323 .......... .......... .......... .......... .......... .......... 237 TTTTTTTTTT GATATCCAAA CTCTTCCCAT TAATTCAATA GATCAACCCT AGATCTTCCC 83263 .......... .......... .......... .......... .......... .......... 237 TAAATGAGGC TGAAAGTGAA AGCCGTTTTT CTGTTTCAGT CGAAGTGAAG GAGCGATTTA 83203 .......... .......... .......... .......... .......... .......... 237 ATAATACCTC CTAGGCCAAG TGAAGAGGCC AAAGCACACG ATTCCCGTGA GTGGCCTCTG 83143 .......... .......... .......... .......... .......... .......... 237 TTTGAAACAG ATGTTTATGA TTGATCTTAT CATTTTAGAA TGTGCATGAT ACTTCAACAG 83083 .......... .......... .......... .......... .......... .......... 237 TGTCCCCCAC CCCCACTCTT CTTTTTCTTG ATATATTGCG TATGGGAAAT GGGGAAAGTA 83023 .......... .......... .......... .......... .......... .......... 237 TTGGGAGGAG GTTTGTGTGA GAATTGAATC TTTTACCTTA AGGATGCAAG GTAGAACATC 82963 .......... .......... .......... .......... .......... .......... 237 ACCAGGGAAG TCTTCCTGTA TCCCCTTCAT TTTGATTGAC ACTCCTGTGA CATTTGTGAA 82903 .......... .......... .......... .......... .......... .......... 237 TGCAGCTGTT TTTATTCCTT AACAAGGTTA CAAATAATTT CCCTCTGCTC TCTGAACATT 82843 .......... .......... .......... .......... .......... .......... 237 ACTCTGGACT AGATCATCTG TCCTCCAATT CTGTTTCACT GTTCAATTAT ATGGACTAAC 82783 .......... .......... .......... .......... .......... .......... 237 ATTTCCAAGG TTACTTGTGT GTATTCTTTG CTTTTATTTC CTTGACTGCT CGATTATAAG 82723 .......... .......... .......... .......... .......... .......... 237 AAACAAGGAA ATAAGTTGGT TTAACAGAAA CGACGATGGT TTATTTACTT GTGTGTCTTT 82663 .......... .......... .......... .......... .......... .......... 237 GTTCTAAGAC AGAATTTAGA AACAAGATTG TTTTATTTTA TTTAATTTTC TGTCCTCTCT 82603 .......... .......... .......... .......... .......... .......... 237 GCTCTCGGGT CTTATTCTAA AGAAACAATT GCTTTGTGCG TTAGCATCTT GATGATGCTT 82543 .......... .......... .......... .......... .......... .......... 237 TGAACTTAAC TGGGATTTTG TTGCTCATTT TATGTGAAGT TCTCATCATC TCTTGCACTT 82483 .......... .......... .......... .......... .......... .......... 237 TAAATTGGTT TAACAGAAAC GAAGATGGGG AAGCTGCTGG AGCATGTACT GGTGTTTTGG 82423 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AAAC GAAGATGGGG AAGCTGCTGG AGCATGTACT GGTGTTTTGG 281 CTCTCAGAAA CAGACGAAAC GAATTGGACA TGCAGTTTTT ATTCCAGAAA CAACAGCCTC 82363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCAGAAA CAGACGAAAC GAATTGGACA TGCAGTTTTT ATTCCAGAAA CAACAGCCTC 341 TGCTGCAGAT AGACCTTCTT CTAATACTTC AAGTCAAGCT CCTTCTATAG TGCTTCCCTT 82303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGCAGAT AGACCTTCTT CTAATACTTC AAGTCAAGCT CCTTCTATAG TGCTTCCCTT 401 CATAGCACCC CCCTCATCTC CTGCATCTTT CTTGCCATCA GAACCTCCTT CAGCAACCCA 82243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGCACCC CCCTCATCTC CTGCATCTTT CTTGCCATCA GAACCTCCTT CAGCAACCCA 461 TTCACCAGTT GGCTCAAAAT GCCTTTCTAT GTCTACATAT TCTCCCAGTG GACCTGCCTC 82183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACCAGTT GGCTCAAAAT GCCTTTCTAT GTCTACATAT TCTCCCAGTG GACCTGCCTC 521 AATTTTTGCT ATTGGGCCCT ACGCTCATGA AACTCAACTG GTCTCTCCAC CTGTTTTCTC 82123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTTGCT ATTGGGCCCT ACGCTCATGA AACTCAACTG GTCTCTCCAC CTGTTTTCTC 581 TGCATTCACT ACTGAACCAT CTACTGCTCC ATTTACCCCT CCTCCTGAGT CAGTCCACTT 82063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATTCACT ACTGAACCAT CTACTGCTCC ATTTACCCCT CCTCCTGAGT CAGTCCACTT 641 GACTACACCC TCATCACCTG AGGTACCATT TGCTAAGCTG CTTGACCCCA ACTACCAGAA 82003 |||||||||| |||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| GACTACACCC TCATCACCTG AGGTACCATT TGCNTAGCTG CTTGACCCCC ACTACCAGAA 701 TGTTGCTGCT GGTCACAGAT ATCCTTT 81976 |||||||||| |||||||||| ||||||| TGTTGCTGCT GGTCACAGAT ATCCTTT 728 hqPGS_C08SLe0084H03.1-_SGN-E333399+ (85182 84946,82466 81976) ******************************************************************************** EST sequence 164 +strand 524 n (File: SGN-E242817+) 1 AAACTCACCT GGACTCTCCA CCTGTTGACT CTGCATTCAC TACTGAACCA TCTACTGCTC 61 CATTTACCCC TCCTCCTGAG TCAGTCCACT TGACTACACC CTCATCACCT GAGGTACCAT 121 TTGCTAAGCT GCTTGACCCC AACTACCAGA ATGTTGCTGC TGGTCACAGA TATCCTTTTG 181 CCCAGTATGA ATGTCAGTCA TACCAACTTC AACCAGGGAG TCCAGTCAGT AACTGGATCT 241 CGCCTGGGTC AGCCATCTCT GTATCTGGAA CTTCATCTCC TTTTCTTGAG CGTGAGTATA 301 CTCCTGGACG CCCTCAGTTC CTGAACCTGG AGAAAATAGC CCCTCACGAG TGGGGATCTC 361 GGCAAGGATC TGGGACTTTG ACCCCTGAGG CAGTAAACCC CAAATATCAC GATAGTTTCC 421 TTCTCAATTA TCAGAACACT GGTGTTCATC GATTTCCAAA GCCCTTTAAT GGTTGGAAAA 481 ACGATCTAAC AGTGGTTGAT CATAGAGTTT CTTTCGAGAT TACT Predicted gene structure (within gDNA segment 83005 to 81020): Exon 1 82153 81630 ( 524 n); cDNA 1 524 ( 524 n); score: 0.985 MATCH C08SLe0084H03.1- SGN-E242817+ 0.985 524 1.000 C PGS_C08SLe0084H03.1-_SGN-E242817+ (82153 81630) Alignment (genomic DNA sequence = upper lines): AAACTCAACT GGTCTCTCCA CCTGTTTTCT CTGCATTCAC TACTGAACCA TCTACTGCTC 82094 ||||||| || || ||||||| |||||| || |||||||||| |||||||||| |||||||||| AAACTCACCT GGACTCTCCA CCTGTTGACT CTGCATTCAC TACTGAACCA TCTACTGCTC 60 CATTTACCCC TCCTCCTGAG TCAGTCCACT TGACTACACC CTCATCACCT GAGGTACCAT 82034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTACCCC TCCTCCTGAG TCAGTCCACT TGACTACACC CTCATCACCT GAGGTACCAT 120 TTGCTAAGCT GCTTGACCCC AACTACCAGA ATGTTGCTGC TGGTCACAGA TATCCTTTTG 81974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTAAGCT GCTTGACCCC AACTACCAGA ATGTTGCTGC TGGTCACAGA TATCCTTTTG 180 CCCAGTATGA ATTTCAGTCA TACCAACTTC AACCAGGGAG TCCAGTCAGT AACTTGATCT 81914 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CCCAGTATGA ATGTCAGTCA TACCAACTTC AACCAGGGAG TCCAGTCAGT AACTGGATCT 240 CGCCTGGGTC AGCCATCTCT GTATCTGGAA CTTCATCTCC TTTTCTTGAG CGTGAGTATA 81854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCTGGGTC AGCCATCTCT GTATCTGGAA CTTCATCTCC TTTTCTTGAG CGTGAGTATA 300 CTCCTGGACG CCCTCAGTTC CTGAACCTGG AGAAAATAGC CCCTCACGAG TGGGGATCTC 81794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTGGACG CCCTCAGTTC CTGAACCTGG AGAAAATAGC CCCTCACGAG TGGGGATCTC 360 GGCAAGGATC TGGGACTTTG ACCCCTGAGG CAGTAAACCC CAAATATCAC GATAGTTTCC 81734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAGGATC TGGGACTTTG ACCCCTGAGG CAGTAAACCC CAAATATCAC GATAGTTTCC 420 TTCTCAATTA TCAGAACACT GGTGTTCATC GTCTTCCAAA GCCCTTTAAT GGTTGGAAAA 81674 |||||||||| |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| TTCTCAATTA TCAGAACACT GGTGTTCATC GATTTCCAAA GCCCTTTAAT GGTTGGAAAA 480 ACGATCTAAC AGTGGTTGAT CATAGAGTTT CTTTCGAGAT TACT 81630 |||||||||| |||||||||| |||||||||| |||||||||| |||| ACGATCTAAC AGTGGTTGAT CATAGAGTTT CTTTCGAGAT TACT 524 hqPGS_C08SLe0084H03.1-_SGN-E242817+ (82153 81630) ******************************************************************************** EST sequence 178 +strand 525 n (File: SGN-E200236+) 1 TGCCTCAATT TTTGCTATTG GGCCCTACGC TCATGAAACT CAACTGGTCT CTCCACCTGT 61 TTTCTCTGCA TTCACTACTG AACCATCTAC TGCTCCATTT ACCCCTCCTC CTGAGTCAGT 121 CCACTTGACT ACACCCTCAT CACCTGAGGT ACCATTTGCT AAGCTGCTTG ACCCCAACTA 181 CCAGAATGTT GCTGCTGGTC ACAGATATCC TTTTGCCCAG TATGAATTTC AGTCATACCA 241 ACTTCAACCA GGGAGTCCAG TCAGTAACTT GATCTCGCCT GGGTCAGCCA TCTCTGTATC 301 TGGAACTTCA TCTCCTTTTC TTGAGCGTGA GTATACTCCT GGACGCCCTC AGTTCCTGAA 361 CCTGGAGAAA ATAGCCCCTC ACGAGTGGGG ATCTCGGCAA GGATCTGGGA CTTTGACCCC 421 TGAGGCAGTA AACCCCAAAT ATCACGATAG TTTCCTTCTC AATTATCAGA ACACTGGTGT 481 TCATCGTTTT CCAAAGCCCT TTAATGGTTG GAAAAACGAT CTAAC Predicted gene structure (within gDNA segment 82788 to 81054): Exon 1 82188 81664 ( 525 n); cDNA 1 525 ( 525 n); score: 0.998 MATCH C08SLe0084H03.1- SGN-E200236+ 0.998 525 1.000 C PGS_C08SLe0084H03.1-_SGN-E200236+ (82188 81664) Alignment (genomic DNA sequence = upper lines): TGCCTCAATT TTTGCTATTG GGCCCTACGC TCATGAAACT CAACTGGTCT CTCCACCTGT 82129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCAATT TTTGCTATTG GGCCCTACGC TCATGAAACT CAACTGGTCT CTCCACCTGT 60 TTTCTCTGCA TTCACTACTG AACCATCTAC TGCTCCATTT ACCCCTCCTC CTGAGTCAGT 82069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCTGCA TTCACTACTG AACCATCTAC TGCTCCATTT ACCCCTCCTC CTGAGTCAGT 120 CCACTTGACT ACACCCTCAT CACCTGAGGT ACCATTTGCT AAGCTGCTTG ACCCCAACTA 82009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTTGACT ACACCCTCAT CACCTGAGGT ACCATTTGCT AAGCTGCTTG ACCCCAACTA 180 CCAGAATGTT GCTGCTGGTC ACAGATATCC TTTTGCCCAG TATGAATTTC AGTCATACCA 81949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAATGTT GCTGCTGGTC ACAGATATCC TTTTGCCCAG TATGAATTTC AGTCATACCA 240 ACTTCAACCA GGGAGTCCAG TCAGTAACTT GATCTCGCCT GGGTCAGCCA TCTCTGTATC 81889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCAACCA GGGAGTCCAG TCAGTAACTT GATCTCGCCT GGGTCAGCCA TCTCTGTATC 300 TGGAACTTCA TCTCCTTTTC TTGAGCGTGA GTATACTCCT GGACGCCCTC AGTTCCTGAA 81829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAACTTCA TCTCCTTTTC TTGAGCGTGA GTATACTCCT GGACGCCCTC AGTTCCTGAA 360 CCTGGAGAAA ATAGCCCCTC ACGAGTGGGG ATCTCGGCAA GGATCTGGGA CTTTGACCCC 81769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGGAGAAA ATAGCCCCTC ACGAGTGGGG ATCTCGGCAA GGATCTGGGA CTTTGACCCC 420 TGAGGCAGTA AACCCCAAAT ATCACGATAG TTTCCTTCTC AATTATCAGA ACACTGGTGT 81709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCAGTA AACCCCAAAT ATCACGATAG TTTCCTTCTC AATTATCAGA ACACTGGTGT 480 TCATCGTCTT CCAAAGCCCT TTAATGGTTG GAAAAACGAT CTAAC 81664 ||||||| || |||||||||| |||||||||| |||||||||| ||||| TCATCGTTTT CCAAAGCCCT TTAATGGTTG GAAAAACGAT CTAAC 525 hqPGS_C08SLe0084H03.1-_SGN-E200236+ (82188 81664) ******************************************************************************** EST sequence 239 +strand 779 n (File: SGN-E343444+) 1 TCTTAAAAAT ATTGCTCTTG CTTATCTTGG ATCACTTGAA AACCCAGAAA TCACAGAACT 61 TCTATTGAAT GAATACAGAA ACGCCACAAA CATGACAGAT CAGTTTGCAG CTTTAGTGGC 121 TATCGATCAG CAACCTGCAA TTCGTGAAGA AATTTTGGCT GATTTCTATA ACAAGTGGCA 181 GGATGATTAC TTGGTTGTGA ACAAGTGGCT TGCTCTTCAA GCTATGTCAG ACATGCCTGG 241 TAATGTTGAG AATGTCAAGA AACTTCTAAA CCATACAGCC TTTGACCTAT GTAATCCAAA 301 TAAGGTTTAT TCGTTGATCG GAGGATTTTG TGGTTCACCT GTCAACTTCC ATAGCAAGGA 361 TGGCTCCGGC TACAAGTTCT TGGGAGAACT AGTGGTGAAG CTTGACAAGA TGAATCCACA 421 GGTGGCTTCA CGAATGGTTT CAGCGTTCTC CAGGTGGAAA CGTTATGATG AAACAAGACA 481 GAGTCTCGCG AAGGAACAAT TGGAGATGAT CTTGTCTACT GAGGGACTCT CAGAGAATGT 541 GTTTGAAATC GCATCGAAGA GCTTGGCAGC TTGATTTTTA TATTTTTGGT TTCATTTTTC 601 AGTTATTTGA ACCGTGCTCT ATTTGTTCCA AAGAGTTTAT AATTATGTAA TGGTTTCAGT 661 AAACATTAAA ACTTAGTTAC ACTTAGTGAT ATTCATACCT GCGATTTGCA TTAGAATTGC 721 ATTGTTCGTA GATATTAATT CCTNCGTTTA AAAAATAATA ATGACCTAAT TTGATTGAC Predicted gene structure (within gDNA segment 92855 to 90038): Exon 1 92167 92148 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 92147 92065 ( 83 n); Pd: 0.993 (s: 0), Pa: 0.957 (s: 1.00) Exon 2 92064 91892 ( 173 n); cDNA 21 193 ( 173 n); score: 1.000 Intron 2 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 91718 91608 ( 111 n); cDNA 194 304 ( 111 n); score: 1.000 Intron 3 91607 91427 ( 181 n); Pd: 0.985 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 91426 91310 ( 117 n); cDNA 305 421 ( 117 n); score: 1.000 Intron 4 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 5 91114 91043 ( 72 n); cDNA 422 493 ( 72 n); score: 1.000 Intron 5 91042 90934 ( 109 n); Pd: 0.988 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 6 90933 90648 ( 286 n); cDNA 494 779 ( 286 n); score: 0.993 MATCH C08SLe0084H03.1- SGN-E343444+ 0.997 779 1.000 C PGS_C08SLe0084H03.1-_SGN-E343444+ (92167 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90648) Alignment (genomic DNA sequence = upper lines): TCTTAAAAAT ATTGCTCTTG GTCTGTTTGT CTTCTCATCT TTCTCAATAG AGTATTTTTA 92108 |||||||||| |||||||||| TCTTAAAAAT ATTGCTCTTG .......... .......... .......... .......... 20 GAATTTGACA AATTACAATT CCACTGACCT ATTTTGTCTA CAGCTTATCT TGGATCACTT 92048 ||||||| |||||||||| .......... .......... .......... .......... ...CTTATCT TGGATCACTT 37 GAAAACCCAG AAATCACAGA ACTTCTATTG AATGAATACA GAAACGCCAC AAACATGACA 91988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAACCCAG AAATCACAGA ACTTCTATTG AATGAATACA GAAACGCCAC AAACATGACA 97 GATCAGTTTG CAGCTTTAGT GGCTATCGAT CAGCAACCTG CAATTCGTGA AGAAATTTTG 91928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAGTTTG CAGCTTTAGT GGCTATCGAT CAGCAACCTG CAATTCGTGA AGAAATTTTG 157 GCTGATTTCT ATAACAAGTG GCAGGATGAT TACTTGGTAC ATCTCTATGC CTCTAATACC 91868 |||||||||| |||||||||| |||||||||| |||||| GCTGATTTCT ATAACAAGTG GCAGGATGAT TACTTG.... .......... .......... 193 TGACTGTCAT CTTTGACCGT AATTCTTGTC TACCGGATCT GTTCTTGCCT TCAAATTGTT 91808 .......... .......... .......... .......... .......... .......... 193 GAGTAAAACC TGCATGACGT CGAATCATTC ATAACTCAGA GGGAAACTAA AAAATCTAAA 91748 .......... .......... .......... .......... .......... .......... 193 AATTCTTATC TCACTATATT TTTCCGTAGG TTGTGAACAA GTGGCTTGCT CTTCAAGCTA 91688 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTGTGAACAA GTGGCTTGCT CTTCAAGCTA 224 TGTCAGACAT GCCTGGTAAT GTTGAGAATG TCAAGAAACT TCTAAACCAT ACAGCCTTTG 91628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAGACAT GCCTGGTAAT GTTGAGAATG TCAAGAAACT TCTAAACCAT ACAGCCTTTG 284 ACCTATGTAA TCCAAATAAG GTATGTTTTT TCGAGTTTGA TGTCTTTCGT ACTCTTCAAA 91568 |||||||||| |||||||||| ACCTATGTAA TCCAAATAAG .......... .......... .......... .......... 304 AAAGCCAGTG GATGTGCCGG ATCCTCCAAA AGGGGCGCAC TTTTGGAGGA TCTGACCTGG 91508 .......... .......... .......... .......... .......... .......... 304 GTACGGAAAC ATTAGCAACC TATAGCTTTC TAGTTTATGT CAATTACAAG ACATGATGTT 91448 .......... .......... .......... .......... .......... .......... 304 TTATTTTGGA CAAATGCACA GGTTTATTCG TTGATCGGAG GATTTTGTGG TTCACCTGTC 91388 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTTATTCG TTGATCGGAG GATTTTGTGG TTCACCTGTC 343 AACTTCCATA GCAAGGATGG CTCCGGCTAC AAGTTCTTGG GAGAACTAGT GGTGAAGCTT 91328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTCCATA GCAAGGATGG CTCCGGCTAC AAGTTCTTGG GAGAACTAGT GGTGAAGCTT 403 GACAAGATGA ATCCACAGGT CTCTTACATT ACTATTTCAA TTGCTTTTGA TACAATTCAC 91268 |||||||||| |||||||| GACAAGATGA ATCCACAG.. .......... .......... .......... .......... 421 CAATGAATCA CGAAACACTA TTTGTTCTTG AAAGAAAAAG CTTGAACACG ACCACTCATG 91208 .......... .......... .......... .......... .......... .......... 421 ATCCATCTTG GTCAATCCGA TCTTGAACTA AAGGACGGTT TTCCAGTAGC AACAAGCGTG 91148 .......... .......... .......... .......... .......... .......... 421 TGTCTTAGCT ATTCTTCTTC TAATGGATGG CAGGTGGCTT CACGAATGGT TTCAGCGTTC 91088 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTGGCTT CACGAATGGT TTCAGCGTTC 448 TCCAGGTGGA AACGTTATGA TGAAACAAGA CAGAGTCTCG CGAAGGTAAG TAATTGCTTT 91028 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCCAGGTGGA AACGTTATGA TGAAACAAGA CAGAGTCTCG CGAAG..... .......... 493 CCTTAGACGT TCTTCCGGGG AGAAGTTCCC TTCGAGTATT GTGTTTGCAT AGAAAGGTTG 90968 .......... .......... .......... .......... .......... .......... 493 GAAAGTAAAG AAATATATTA TTGTGTTAAA ACAGGAACAA TTGGAGATGA TCTTGTCTAC 90908 |||||| |||||||||| |||||||||| .......... .......... .......... ....GAACAA TTGGAGATGA TCTTGTCTAC 519 TGAGGGACTC TCAGAGAATG TGTTTGAAAT CGCATCGAAG AGCTTGGCAG CTTGATTTTT 90848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGGACTC TCAGAGAATG TGTTTGAAAT CGCATCGAAG AGCTTGGCAG CTTGATTTTT 579 ATATTTTTGG TTTCATTTTT CAGTTATTTG AACCGTGCTC TATTTGTTCC AAAGAGTTTA 90788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTTTGG TTTCATTTTT CAGTTATTTG AACCGTGCTC TATTTGTTCC AAAGAGTTTA 639 TAATTATGTA ATGGTTTCAG TAAACATTAA AACTTAGTTA CACTTAGTGA TATTCATACC 90728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTATGTA ATGGTTTCAG TAAACATTAA AACTTAGTTA CACTTAGTGA TATTCATACC 699 TGCGATTTGC ATTAGAATTG CGTTGTTCGT AGATATTAAT TCCTCCGTTT AAAAAATAAT 90668 |||||||||| |||||||||| | |||||||| |||||||||| |||| ||||| |||||||||| TGCGATTTGC ATTAGAATTG CATTGTTCGT AGATATTAAT TCCTNCGTTT AAAAAATAAT 759 AATGACCTAA TTTGATTGAC 90648 |||||||||| |||||||||| AATGACCTAA TTTGATTGAC 779 hqPGS_C08SLe0084H03.1-_SGN-E343444+ (92167 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90648) ******************************************************************************** EST sequence 176 +strand 396 n (File: SGN-E340008+) 1 TGGTTCACCT GTCAACTTCC ATAGCAAGGA TGGCTCCGGC TACAAGTTCT TGGGAGAACT 61 AGTGGTGAAG CTTGACAAGA TGAATCCACA GGTGGCTTCA CGAATGGTTT CAGCGTTCTC 121 CAGGTGGAAA CGTTATGATG AAACAAGACA GAGTCTCGCG AAGGAACAAT TGGAGATGAT 181 CTTGTCTACT GAGGGACTCT CAGAGAATGT GTTTGAAATC GCATCGAAGA GCTTGGCAGC 241 TTGATTTTTA TATTTTTGGT TTCATTTTTC AGTTATTTGA ACCGTGCTCT ATTTGTTCCA 301 AAGAGTTTAT AATTATGTAA TGGTTTCAGT AAACATTAAA ACTTAGTTAC ACTTAGTGAT 361 ATTCATACCT GCGATTTGCA TTAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 92000 to 89974): Exon 1 91400 91310 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 2 91114 91043 ( 72 n); cDNA 92 163 ( 72 n); score: 1.000 Intron 2 91042 90934 ( 109 n); Pd: 0.988 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 3 90933 90714 ( 220 n); cDNA 164 383 ( 220 n); score: 1.000 PPA cDNA 384 396 MATCH C08SLe0084H03.1- SGN-E340008+ 1.000 383 0.967 C PGS_C08SLe0084H03.1-_SGN-E340008+ (91400 91310,91114 91043,90933 90714) Alignment (genomic DNA sequence = upper lines): TGGTTCACCT GTCAACTTCC ATAGCAAGGA TGGCTCCGGC TACAAGTTCT TGGGAGAACT 91341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTCACCT GTCAACTTCC ATAGCAAGGA TGGCTCCGGC TACAAGTTCT TGGGAGAACT 60 AGTGGTGAAG CTTGACAAGA TGAATCCACA GGTCTCTTAC ATTACTATTT CAATTGCTTT 91281 |||||||||| |||||||||| |||||||||| | AGTGGTGAAG CTTGACAAGA TGAATCCACA G......... .......... .......... 91 TGATACAATT CACCAATGAA TCACGAAACA CTATTTGTTC TTGAAAGAAA AAGCTTGAAC 91221 .......... .......... .......... .......... .......... .......... 91 ACGACCACTC ATGATCCATC TTGGTCAATC CGATCTTGAA CTAAAGGACG GTTTTCCAGT 91161 .......... .......... .......... .......... .......... .......... 91 AGCAACAAGC GTGTGTCTTA GCTATTCTTC TTCTAATGGA TGGCAGGTGG CTTCACGAAT 91101 |||| |||||||||| .......... .......... .......... .......... ......GTGG CTTCACGAAT 105 GGTTTCAGCG TTCTCCAGGT GGAAACGTTA TGATGAAACA AGACAGAGTC TCGCGAAGGT 91041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGTTTCAGCG TTCTCCAGGT GGAAACGTTA TGATGAAACA AGACAGAGTC TCGCGAAG.. 163 AAGTAATTGC TTTCCTTAGA CGTTCTTCCG GGGAGAAGTT CCCTTCGAGT ATTGTGTTTG 90981 .......... .......... .......... .......... .......... .......... 163 CATAGAAAGG TTGGAAAGTA AAGAAATATA TTATTGTGTT AAAACAGGAA CAATTGGAGA 90921 ||| |||||||||| .......... .......... .......... .......... .......GAA CAATTGGAGA 176 TGATCTTGTC TACTGAGGGA CTCTCAGAGA ATGTGTTTGA AATCGCATCG AAGAGCTTGG 90861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTTGTC TACTGAGGGA CTCTCAGAGA ATGTGTTTGA AATCGCATCG AAGAGCTTGG 236 CAGCTTGATT TTTATATTTT TGGTTTCATT TTTCAGTTAT TTGAACCGTG CTCTATTTGT 90801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTGATT TTTATATTTT TGGTTTCATT TTTCAGTTAT TTGAACCGTG CTCTATTTGT 296 TCCAAAGAGT TTATAATTAT GTAATGGTTT CAGTAAACAT TAAAACTTAG TTACACTTAG 90741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAAGAGT TTATAATTAT GTAATGGTTT CAGTAAACAT TAAAACTTAG TTACACTTAG 356 TGATATTCAT ACCTGCGATT TGCATTA 90714 |||||||||| |||||||||| ||||||| TGATATTCAT ACCTGCGATT TGCATTA 383 hqPGS_C08SLe0084H03.1-_SGN-E340008+ (91400 91310,91114 91043,90933 90714) ******************************************************************************** EST sequence 5 -strand 298 n (File: SGN-E233849-) 1 GAATGGTTTC AGCGTTCTCC AGGTGAAAAC GTTATGATGA AACAAGACAG AGTCTCGCGA 61 AGGAACAATT GGAGATGATC TTGTCTACTG AGGGACTCTC AGAGAATGTG TTTGAAATCG 121 CATCGAAGAG CTTGGCAGCT TGATTTTTAT ATTTTTGGTT TCATTTTTCA GTTATTTGAA 181 CCGTGCTCTA TTTGTTCCAA AGAGTTTATA ATTATGTAAT GGTTTCAGTA AACATTAAAA 241 CTTAGTTACA CTTAGTGATA TTCATACCTG CGATTTGCAT TAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 91714 to 89954): Exon 1 91104 91043 ( 62 n); cDNA 1 62 ( 62 n); score: 0.984 Intron 1 91042 90934 ( 109 n); Pd: 0.988 (s: 0.98), Pa: 0.982 (s: 1.00) Exon 2 90933 90714 ( 220 n); cDNA 63 282 ( 220 n); score: 1.000 PPA cDNA 283 298 MATCH C08SLe0084H03.1- SGN-E233849- 0.996 282 0.946 C PGS_C08SLe0084H03.1-_SGN-E233849- (91104 91043,90933 90714) Alignment (genomic DNA sequence = upper lines): GAATGGTTTC AGCGTTCTCC AGGTGGAAAC GTTATGATGA AACAAGACAG AGTCTCGCGA 91045 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| GAATGGTTTC AGCGTTCTCC AGGTGAAAAC GTTATGATGA AACAAGACAG AGTCTCGCGA 60 AGGTAAGTAA TTGCTTTCCT TAGACGTTCT TCCGGGGAGA AGTTCCCTTC GAGTATTGTG 90985 || AG........ .......... .......... .......... .......... .......... 62 TTTGCATAGA AAGGTTGGAA AGTAAAGAAA TATATTATTG TGTTAAAACA GGAACAATTG 90925 ||||||||| .......... .......... .......... .......... .......... .GAACAATTG 71 GAGATGATCT TGTCTACTGA GGGACTCTCA GAGAATGTGT TTGAAATCGC ATCGAAGAGC 90865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGATCT TGTCTACTGA GGGACTCTCA GAGAATGTGT TTGAAATCGC ATCGAAGAGC 131 TTGGCAGCTT GATTTTTATA TTTTTGGTTT CATTTTTCAG TTATTTGAAC CGTGCTCTAT 90805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCAGCTT GATTTTTATA TTTTTGGTTT CATTTTTCAG TTATTTGAAC CGTGCTCTAT 191 TTGTTCCAAA GAGTTTATAA TTATGTAATG GTTTCAGTAA ACATTAAAAC TTAGTTACAC 90745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCCAAA GAGTTTATAA TTATGTAATG GTTTCAGTAA ACATTAAAAC TTAGTTACAC 251 TTAGTGATAT TCATACCTGC GATTTGCATT A 90714 |||||||||| |||||||||| |||||||||| | TTAGTGATAT TCATACCTGC GATTTGCATT A 282 hqPGS_C08SLe0084H03.1-_SGN-E233849- (91104 91043,90933 90714) ******************************************************************************** EST sequence 159 +strand 686 n (File: SGN-E210817+) 1 AGAAATCACA GAACTTCTAT TGAATGAATA CAGAAACGCC ACAAACATGA CAGATCAGTT 61 TGCAGCTTTA GTGGCTATCG ATCAGCAACC TGCAATTCGT GAAGAAATTT TGGCTGATTT 121 CTATAACAAG TGGCAGGATG ATTACTTGGT TGTGAACAAG TGGCTTGCTC TTCAAGCTAT 181 GTCAGACATG CCTGGTAATG TTGAGAATGT CAAGAAACTT CTAAACCATA CAGCCTTTGA 241 CCTATGTAAT CCAAATAAGG TTTATTCGTT GATCGGAGGA TTTTGTGGTT CACCTGTCAA 301 CTTCCATAGC AAGGATGGCT CCGGCTACAA GTTCTTGGGA GAACTAGTGG TGAAGCTTGA 361 CAAGATGAAT CCACAGGTGG CTTCACGAAT GGTTTCAGCG TTCTCCAGGT GGAAACGTTA 421 TGATGAAACA AGACAGAGTC TCGCGAAGGA ACCATTGGAG ATGATCTTGT CTACTGAGGG 481 ACTCTCAGAG AATGTGTTTG AAATCGCATC GAAGAACTTG GCAGCTTGAT TTTTATATAT 541 TTGGGTTCAT TTTTCAGTTA TTTGAACCGC GCTCTATTTG TTCCCAAGAG TTTATAATTA 601 TGTGATGGGT TCAGGAAACA TTTAAACTTA GTTACACTTT AGTGATATTC CTACCTGCCG 661 ATTTGCCTTA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 92639 to 89339): Exon 1 92039 91892 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 91718 91608 ( 111 n); cDNA 149 259 ( 111 n); score: 1.000 Intron 2 91607 91427 ( 181 n); Pd: 0.985 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 91426 91310 ( 117 n); cDNA 260 376 ( 117 n); score: 1.000 Intron 3 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 4 91114 91043 ( 72 n); cDNA 377 448 ( 72 n); score: 1.000 Intron 4 91042 90934 ( 109 n); Pd: 0.988 (s: 1.00), Pa: 0.982 (s: 0.98) Exon 5 90933 90718 ( 216 n); cDNA 449 666 ( 218 n); score: 0.926 Intron 5 90717 90325 ( 393 n); Pd: 0.000 (s: 0.85), Pa: 0.687 (s: 0) Exon 6 90324 90306 ( 19 n); cDNA 667 685 ( 19 n); score: 0.632 MATCH C08SLe0084H03.1- SGN-E210817+ 0.976 683 0.996 C PGS_C08SLe0084H03.1-_SGN-E210817+ (92039 91892,91718 91608,91426 91310,91114 91043,90933 90718,90324 90306) Alignment (genomic DNA sequence = upper lines): AGAAATCACA GAACTTCTAT TGAATGAATA CAGAAACGCC ACAAACATGA CAGATCAGTT 91980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATCACA GAACTTCTAT TGAATGAATA CAGAAACGCC ACAAACATGA CAGATCAGTT 60 TGCAGCTTTA GTGGCTATCG ATCAGCAACC TGCAATTCGT GAAGAAATTT TGGCTGATTT 91920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTTTA GTGGCTATCG ATCAGCAACC TGCAATTCGT GAAGAAATTT TGGCTGATTT 120 CTATAACAAG TGGCAGGATG ATTACTTGGT ACATCTCTAT GCCTCTAATA CCTGACTGTC 91860 |||||||||| |||||||||| |||||||| CTATAACAAG TGGCAGGATG ATTACTTG.. .......... .......... .......... 148 ATCTTTGACC GTAATTCTTG TCTACCGGAT CTGTTCTTGC CTTCAAATTG TTGAGTAAAA 91800 .......... .......... .......... .......... .......... .......... 148 CCTGCATGAC GTCGAATCAT TCATAACTCA GAGGGAAACT AAAAAATCTA AAAATTCTTA 91740 .......... .......... .......... .......... .......... .......... 148 TCTCACTATA TTTTTCCGTA GGTTGTGAAC AAGTGGCTTG CTCTTCAAGC TATGTCAGAC 91680 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTGTGAAC AAGTGGCTTG CTCTTCAAGC TATGTCAGAC 187 ATGCCTGGTA ATGTTGAGAA TGTCAAGAAA CTTCTAAACC ATACAGCCTT TGACCTATGT 91620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTGGTA ATGTTGAGAA TGTCAAGAAA CTTCTAAACC ATACAGCCTT TGACCTATGT 247 AATCCAAATA AGGTATGTTT TTTCGAGTTT GATGTCTTTC GTACTCTTCA AAAAAGCCAG 91560 |||||||||| || AATCCAAATA AG........ .......... .......... .......... .......... 259 TGGATGTGCC GGATCCTCCA AAAGGGGCGC ACTTTTGGAG GATCTGACCT GGGTACGGAA 91500 .......... .......... .......... .......... .......... .......... 259 ACATTAGCAA CCTATAGCTT TCTAGTTTAT GTCAATTACA AGACATGATG TTTTATTTTG 91440 .......... .......... .......... .......... .......... .......... 259 GACAAATGCA CAGGTTTATT CGTTGATCGG AGGATTTTGT GGTTCACCTG TCAACTTCCA 91380 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTTTATT CGTTGATCGG AGGATTTTGT GGTTCACCTG TCAACTTCCA 306 TAGCAAGGAT GGCTCCGGCT ACAAGTTCTT GGGAGAACTA GTGGTGAAGC TTGACAAGAT 91320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAAGGAT GGCTCCGGCT ACAAGTTCTT GGGAGAACTA GTGGTGAAGC TTGACAAGAT 366 GAATCCACAG GTCTCTTACA TTACTATTTC AATTGCTTTT GATACAATTC ACCAATGAAT 91260 |||||||||| GAATCCACAG .......... .......... .......... .......... .......... 376 CACGAAACAC TATTTGTTCT TGAAAGAAAA AGCTTGAACA CGACCACTCA TGATCCATCT 91200 .......... .......... .......... .......... .......... .......... 376 TGGTCAATCC GATCTTGAAC TAAAGGACGG TTTTCCAGTA GCAACAAGCG TGTGTCTTAG 91140 .......... .......... .......... .......... .......... .......... 376 CTATTCTTCT TCTAATGGAT GGCAGGTGGC TTCACGAATG GTTTCAGCGT TCTCCAGGTG 91080 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTGGC TTCACGAATG GTTTCAGCGT TCTCCAGGTG 411 GAAACGTTAT GATGAAACAA GACAGAGTCT CGCGAAGGTA AGTAATTGCT TTCCTTAGAC 91020 |||||||||| |||||||||| |||||||||| ||||||| GAAACGTTAT GATGAAACAA GACAGAGTCT CGCGAAG... .......... .......... 448 GTTCTTCCGG GGAGAAGTTC CCTTCGAGTA TTGTGTTTGC ATAGAAAGGT TGGAAAGTAA 90960 .......... .......... .......... .......... .......... .......... 448 AGAAATATAT TATTGTGTTA AAACAGGAAC AATTGGAGAT GATCTTGTCT ACTGAGGGAC 90900 |||| ||||||||| |||||||||| |||||||||| .......... .......... ......GAAC CATTGGAGAT GATCTTGTCT ACTGAGGGAC 482 TCTCAGAGAA TGTGTTTGAA ATCGCATCGA AGAGCTTGGC AGCTTGATTT TTATATTTTT 90840 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||| ||| TCTCAGAGAA TGTGTTTGAA ATCGCATCGA AGAACTTGGC AGCTTGATTT TTATATATTT 542 GGTTTCATTT TTCAGTTATT TGAACCGTGC TCTATTTGTT CCAAAGAGTT TATAATTATG 90780 || ||||||| |||||||||| ||||||| || |||||||||| || ||||||| |||||||||| GGGTTCATTT TTCAGTTATT TGAACCGCGC TCTATTTGTT CCCAAGAGTT TATAATTATG 602 TAATGGTTTC AGTAAACATT AAAACTTAGT TACAC-TTAG TGATATTCAT ACCTG-CGAT 90722 | |||| ||| || ||||||| ||||||||| ||||| |||| |||||||| | ||||| |||| TGATGGGTTC AGGAAACATT TAAACTTAGT TACACTTTAG TGATATTCCT ACCTGCCGAT 662 TTGCATTAGA ATTGCGTTGT TCGTAGATAT TAATTCCTCC GTTTAAAAAA TAATAATGAC 90662 |||| TTGC...... .......... .......... .......... .......... .......... 666 CTAATTTGAT TGACCATATG TTCAATGATT TGGCTATATT TGTAACTAGG ATAGCCATTT 90602 .......... .......... .......... .......... .......... .......... 666 GTTCAGCCCA ATATGAAGGC CCATTACTGT CTGAGTTGAT AGACTAGTCT AGGCCCAATA 90542 .......... .......... .......... .......... .......... .......... 666 TCCAAGCCCA ACTAAAGTAT TTGTATCAGC CCAACGAAAA AGAATGGGCA ACAGCAAATT 90482 .......... .......... .......... .......... .......... .......... 666 CAGATTTATG AGGTATTTAA TTGATATGTA TTAATTATAT TTTTACGAAT GTCTTGTTTA 90422 .......... .......... .......... .......... .......... .......... 666 TTCAGAATGG CATGAGAACT ACTATCATAG GTCTCTTTTC AATTTTGTAT TTCATTATTA 90362 .......... .......... .......... .......... .......... .......... 666 ACTTTTGAAA TATTATTTTA TTTTATTTCA AAATTAGCGT CTGATCATAA AAAAAA 90306 | | | | || |||||| .......... .......... .......... .......CTT AAAAAAAAAA AAAAAA 685 hqPGS_C08SLe0084H03.1-_SGN-E210817+ (92039 91892,91718 91608,91426 91310,91114 91043,90933 90718) ******************************************************************************** EST sequence 234 +strand 289 n (File: SGN-E237798+) 1 GGAAACGTTA TGATGAAACA AGACAGAGTC TCGCGAAGGA ACAATTGGAG ATGATCTTGT 61 CTACTGAGGG ACTCTCAGAG AATGTGTTTG AAATCGCATC GAAGAGCTTG GCAGCTTGAT 121 TTTTATATTT TTGGTTTCAT TTTTCAGTTA TTTGAACCGC GCTCTATTTG TTCCAAAGAG 181 TTTATAATTA TGTAATGGTT TCAGTAAACA TTAAAACTTA GTTACACTTA GTGGAAAAAA 241 AAAAAGAAAA AAAAACAAAA AAATACAAAA AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 91680 to 89569): Exon 1 91080 91043 ( 38 n); cDNA 1 38 ( 38 n); score: 1.000 Intron 1 91042 90934 ( 109 n); Pd: 0.988 (s: 0), Pa: 0.982 (s: 1.00) Exon 2 90933 90739 ( 195 n); cDNA 39 233 ( 195 n); score: 0.995 PPA cDNA 239 255 MATCH C08SLe0084H03.1- SGN-E237798+ 0.995 233 0.806 C PGS_C08SLe0084H03.1-_SGN-E237798+ (91080 91043,90933 90739) Alignment (genomic DNA sequence = upper lines): GGAAACGTTA TGATGAAACA AGACAGAGTC TCGCGAAGGT AAGTAATTGC TTTCCTTAGA 91021 |||||||||| |||||||||| |||||||||| |||||||| GGAAACGTTA TGATGAAACA AGACAGAGTC TCGCGAAG.. .......... .......... 38 CGTTCTTCCG GGGAGAAGTT CCCTTCGAGT ATTGTGTTTG CATAGAAAGG TTGGAAAGTA 90961 .......... .......... .......... .......... .......... .......... 38 AAGAAATATA TTATTGTGTT AAAACAGGAA CAATTGGAGA TGATCTTGTC TACTGAGGGA 90901 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GAA CAATTGGAGA TGATCTTGTC TACTGAGGGA 71 CTCTCAGAGA ATGTGTTTGA AATCGCATCG AAGAGCTTGG CAGCTTGATT TTTATATTTT 90841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCAGAGA ATGTGTTTGA AATCGCATCG AAGAGCTTGG CAGCTTGATT TTTATATTTT 131 TGGTTTCATT TTTCAGTTAT TTGAACCGTG CTCTATTTGT TCCAAAGAGT TTATAATTAT 90781 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TGGTTTCATT TTTCAGTTAT TTGAACCGCG CTCTATTTGT TCCAAAGAGT TTATAATTAT 191 GTAATGGTTT CAGTAAACAT TAAAACTTAG TTACACTTAG TG 90739 |||||||||| |||||||||| |||||||||| |||||||||| || GTAATGGTTT CAGTAAACAT TAAAACTTAG TTACACTTAG TG 233 hqPGS_C08SLe0084H03.1-_SGN-E237798+ (91080 91043,90933 90739) ******************************************************************************** EST sequence 94 -strand 492 n (File: SGN-E227473-) 1 TGGCTTGCTC TTCAAGCTAT GTCAGACATG CCTGGTAATG TTGAGAATGT CAAAAAACTT 61 CTAAACCATA CAGCCTTTGA CCTATGTAAT CCAAATAAGG TTTATTCGTT GATCGAAGGA 121 TTTTGTGGTT CACCTGTCAA CTTCCATAGC AAGGATGGCT CCGGCTACAA GTTCTTGGGA 181 GAACTAGTGG TGAAGCTTGA CAAGATGAAT CCACAGGTGG CTTCACGAAT GGTTTCAGCG 241 TTCTCCAGGT GGAAACGTTA TGATGAAACA AGACAGAGTC TCGCGAAGGA ACAATTGGAG 301 ATGATCTTGT CTACTGAGGG ACTCTCAGAG AATGTGTTTG AAATCGCATC GAAGAGCTTG 361 GCAGCTTGAT TTTTATATTT TTGGTTTCAT TTTTCAGTTA TTTGAACCGT GCTCTATTTG 421 TTCCAAAGAG TTTATAATTA TGTAATGGTT TCAGTAAACA TTAAAACTTA GTTACAAAAA 481 AAAAAAAAAA AA Predicted gene structure (within gDNA segment 92316 to 89986): Exon 1 91706 91608 ( 99 n); cDNA 1 99 ( 99 n); score: 0.990 Intron 1 91607 91427 ( 181 n); Pd: 0.985 (s: 0.98), Pa: 0.984 (s: 0.98) Exon 2 91426 91310 ( 117 n); cDNA 100 216 ( 117 n); score: 0.991 Intron 2 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 3 91114 91043 ( 72 n); cDNA 217 288 ( 72 n); score: 1.000 Intron 3 91042 90934 ( 109 n); Pd: 0.988 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 4 90933 90746 ( 188 n); cDNA 289 476 ( 188 n); score: 1.000 PPA cDNA 477 492 MATCH C08SLe0084H03.1- SGN-E227473- 0.996 476 0.967 C PGS_C08SLe0084H03.1-_SGN-E227473- (91706 91608,91426 91310,91114 91043,90933 90746) Alignment (genomic DNA sequence = upper lines): TGGCTTGCTC TTCAAGCTAT GTCAGACATG CCTGGTAATG TTGAGAATGT CAAGAAACTT 91647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TGGCTTGCTC TTCAAGCTAT GTCAGACATG CCTGGTAATG TTGAGAATGT CAAAAAACTT 60 CTAAACCATA CAGCCTTTGA CCTATGTAAT CCAAATAAGG TATGTTTTTT CGAGTTTGAT 91587 |||||||||| |||||||||| |||||||||| ||||||||| CTAAACCATA CAGCCTTTGA CCTATGTAAT CCAAATAAG. .......... .......... 99 GTCTTTCGTA CTCTTCAAAA AAGCCAGTGG ATGTGCCGGA TCCTCCAAAA GGGGCGCACT 91527 .......... .......... .......... .......... .......... .......... 99 TTTGGAGGAT CTGACCTGGG TACGGAAACA TTAGCAACCT ATAGCTTTCT AGTTTATGTC 91467 .......... .......... .......... .......... .......... .......... 99 AATTACAAGA CATGATGTTT TATTTTGGAC AAATGCACAG GTTTATTCGT TGATCGGAGG 91407 |||||||||| |||||| ||| .......... .......... .......... .......... GTTTATTCGT TGATCGAAGG 119 ATTTTGTGGT TCACCTGTCA ACTTCCATAG CAAGGATGGC TCCGGCTACA AGTTCTTGGG 91347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGTGGT TCACCTGTCA ACTTCCATAG CAAGGATGGC TCCGGCTACA AGTTCTTGGG 179 AGAACTAGTG GTGAAGCTTG ACAAGATGAA TCCACAGGTC TCTTACATTA CTATTTCAAT 91287 |||||||||| |||||||||| |||||||||| ||||||| AGAACTAGTG GTGAAGCTTG ACAAGATGAA TCCACAG... .......... .......... 216 TGCTTTTGAT ACAATTCACC AATGAATCAC GAAACACTAT TTGTTCTTGA AAGAAAAAGC 91227 .......... .......... .......... .......... .......... .......... 216 TTGAACACGA CCACTCATGA TCCATCTTGG TCAATCCGAT CTTGAACTAA AGGACGGTTT 91167 .......... .......... .......... .......... .......... .......... 216 TCCAGTAGCA ACAAGCGTGT GTCTTAGCTA TTCTTCTTCT AATGGATGGC AGGTGGCTTC 91107 |||||||| .......... .......... .......... .......... .......... ..GTGGCTTC 224 ACGAATGGTT TCAGCGTTCT CCAGGTGGAA ACGTTATGAT GAAACAAGAC AGAGTCTCGC 91047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAATGGTT TCAGCGTTCT CCAGGTGGAA ACGTTATGAT GAAACAAGAC AGAGTCTCGC 284 GAAGGTAAGT AATTGCTTTC CTTAGACGTT CTTCCGGGGA GAAGTTCCCT TCGAGTATTG 90987 |||| GAAG...... .......... .......... .......... .......... .......... 288 TGTTTGCATA GAAAGGTTGG AAAGTAAAGA AATATATTAT TGTGTTAAAA CAGGAACAAT 90927 ||||||| .......... .......... .......... .......... .......... ...GAACAAT 295 TGGAGATGAT CTTGTCTACT GAGGGACTCT CAGAGAATGT GTTTGAAATC GCATCGAAGA 90867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGATGAT CTTGTCTACT GAGGGACTCT CAGAGAATGT GTTTGAAATC GCATCGAAGA 355 GCTTGGCAGC TTGATTTTTA TATTTTTGGT TTCATTTTTC AGTTATTTGA ACCGTGCTCT 90807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGGCAGC TTGATTTTTA TATTTTTGGT TTCATTTTTC AGTTATTTGA ACCGTGCTCT 415 ATTTGTTCCA AAGAGTTTAT AATTATGTAA TGGTTTCAGT AAACATTAAA ACTTAGTTAC 90747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTTCCA AAGAGTTTAT AATTATGTAA TGGTTTCAGT AAACATTAAA ACTTAGTTAC 475 A 90746 | A 476 hqPGS_C08SLe0084H03.1-_SGN-E227473- (91706 91608,91426 91310,91114 91043,90933 90746) ******************************************************************************** EST sequence 93 -strand 420 n (File: SGN-E227401-) 1 GCCTTTGACC TATGTAATCC AAATAAGGTT TATTCGTTGA TCGGAGGATT TTGTGGTTCA 61 CCTGTCAACT TCCATAGCAA GGATGGCTCC GGCTACAAGT TCTTGGGAGA ACTAGTGGTG 121 AAGCTTGACA AGATGAATCC ACAGGTGGCT TCACGAATGG TTTCAGCGTT CTCCAGGTGG 181 AAACGTTATG ATGAAACAAG ACAGAGTCTC GCGAAGGAAC AATTGGAGAT GATCTTGTCT 241 ACTGAGGGAC TCTCAGAGAA TGTGTTTGAA ATCGCATCGA AGAGCTTGGC AGCTTGATTT 301 TTATATTTTT GGTTTCATTT TTCAGTTATT TGAACCGTGC TCTATTTGTT CCAAAGAGTT 361 TATAATTATG TAATGGTTTC AGTAAACATT AAAACTTAGT TACAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 92288 to 89986): Exon 1 91634 91608 ( 27 n); cDNA 1 27 ( 27 n); score: 1.000 Intron 1 91607 91427 ( 181 n); Pd: 0.985 (s: 0), Pa: 0.984 (s: 1.00) Exon 2 91426 91310 ( 117 n); cDNA 28 144 ( 117 n); score: 1.000 Intron 2 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 3 91114 91043 ( 72 n); cDNA 145 216 ( 72 n); score: 1.000 Intron 3 91042 90934 ( 109 n); Pd: 0.988 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 4 90933 90746 ( 188 n); cDNA 217 404 ( 188 n); score: 1.000 PPA cDNA 405 420 MATCH C08SLe0084H03.1- SGN-E227401- 1.000 404 0.962 C PGS_C08SLe0084H03.1-_SGN-E227401- (91634 91608,91426 91310,91114 91043,90933 90746) Alignment (genomic DNA sequence = upper lines): GCCTTTGACC TATGTAATCC AAATAAGGTA TGTTTTTTCG AGTTTGATGT CTTTCGTACT 91575 |||||||||| |||||||||| ||||||| GCCTTTGACC TATGTAATCC AAATAAG... .......... .......... .......... 27 CTTCAAAAAA GCCAGTGGAT GTGCCGGATC CTCCAAAAGG GGCGCACTTT TGGAGGATCT 91515 .......... .......... .......... .......... .......... .......... 27 GACCTGGGTA CGGAAACATT AGCAACCTAT AGCTTTCTAG TTTATGTCAA TTACAAGACA 91455 .......... .......... .......... .......... .......... .......... 27 TGATGTTTTA TTTTGGACAA ATGCACAGGT TTATTCGTTG ATCGGAGGAT TTTGTGGTTC 91395 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT TTATTCGTTG ATCGGAGGAT TTTGTGGTTC 59 ACCTGTCAAC TTCCATAGCA AGGATGGCTC CGGCTACAAG TTCTTGGGAG AACTAGTGGT 91335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGTCAAC TTCCATAGCA AGGATGGCTC CGGCTACAAG TTCTTGGGAG AACTAGTGGT 119 GAAGCTTGAC AAGATGAATC CACAGGTCTC TTACATTACT ATTTCAATTG CTTTTGATAC 91275 |||||||||| |||||||||| ||||| GAAGCTTGAC AAGATGAATC CACAG..... .......... .......... .......... 144 AATTCACCAA TGAATCACGA AACACTATTT GTTCTTGAAA GAAAAAGCTT GAACACGACC 91215 .......... .......... .......... .......... .......... .......... 144 ACTCATGATC CATCTTGGTC AATCCGATCT TGAACTAAAG GACGGTTTTC CAGTAGCAAC 91155 .......... .......... .......... .......... .......... .......... 144 AAGCGTGTGT CTTAGCTATT CTTCTTCTAA TGGATGGCAG GTGGCTTCAC GAATGGTTTC 91095 |||||||||| |||||||||| .......... .......... .......... .......... GTGGCTTCAC GAATGGTTTC 164 AGCGTTCTCC AGGTGGAAAC GTTATGATGA AACAAGACAG AGTCTCGCGA AGGTAAGTAA 91035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AGCGTTCTCC AGGTGGAAAC GTTATGATGA AACAAGACAG AGTCTCGCGA AG........ 216 TTGCTTTCCT TAGACGTTCT TCCGGGGAGA AGTTCCCTTC GAGTATTGTG TTTGCATAGA 90975 .......... .......... .......... .......... .......... .......... 216 AAGGTTGGAA AGTAAAGAAA TATATTATTG TGTTAAAACA GGAACAATTG GAGATGATCT 90915 ||||||||| |||||||||| .......... .......... .......... .......... .GAACAATTG GAGATGATCT 235 TGTCTACTGA GGGACTCTCA GAGAATGTGT TTGAAATCGC ATCGAAGAGC TTGGCAGCTT 90855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTACTGA GGGACTCTCA GAGAATGTGT TTGAAATCGC ATCGAAGAGC TTGGCAGCTT 295 GATTTTTATA TTTTTGGTTT CATTTTTCAG TTATTTGAAC CGTGCTCTAT TTGTTCCAAA 90795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTTATA TTTTTGGTTT CATTTTTCAG TTATTTGAAC CGTGCTCTAT TTGTTCCAAA 355 GAGTTTATAA TTATGTAATG GTTTCAGTAA ACATTAAAAC TTAGTTACA 90746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAGTTTATAA TTATGTAATG GTTTCAGTAA ACATTAAAAC TTAGTTACA 404 hqPGS_C08SLe0084H03.1-_SGN-E227401- (91634 91608,91426 91310,91114 91043,90933 90746) ******************************************************************************** EST sequence 143 -strand 820 n (File: SGN-E262239-) 1 CCAGATGCCG TTCATGCAGT GCGGACTTTC ATCAGGAAAG CAACTGGCTT CTGAATTGAA 61 ACAAGAGTCC NTTATCACTG CTAAAAACAA CAGGAGCTCT GGTGCTTATG AGTTTGATCA 121 TAACAATATG GCACGTCGTG CTCTTAAAAA TATTGCTCTT GCTTATCTTG GATCACTTGA 181 AAACCCAGAA ATCACAGAAC TTCTATTGAA TGAATACAGA AACGCCACAA ACATGACAGA 241 TCAGTTTGCA GCTTTAGTGG CTATCGATCA GCAACCTGCA ATTCGTGAAG AAATTTTGGC 301 TGATTTCTAT AACAAGTGGC AGGATGATTA CTTGGTTGTG AACAAGTGGC TTGCTCTTCA 361 AGCTATGTCA GACATGCCTG GTAATGTTGA GAATGTCAAG AAACTTCTAA ACCATACAGC 421 CTTTGACCTA TGTAATCCAA ATAAGGTTTA TTCGTTGATC GGAGGATTTT GTGGTTCACC 481 TGTCAACTTC CATAGCAAGG ATGGCTCCGG CTACAAGTTC TTGGGAGAAC TAGTGGTGAA 541 GCTTGACAAG ATGAATCCAC AGGTGGCTTC ACGAATGGTT TCAGCGTTCT CCAGGTGGAA 601 ACGTTATGAT GAAACAAGAC AGAGTCTCGC GAAGGAACAA TTGGAGATGA TCTTGTCTAC 661 TGAGGGACTC TCAGAGAATG TGTTTGAAAT CGCATCGAAG AGCTTGGCAG CTTGATTTTT 721 ATATTTTTGG TTTCATTTTT CAGTTATTTG AACCGTGCTC TATTTGTTCC AAAGAGTTTA 781 TAATTATGTA ATGGTTTCAG TAAACATTAA AACTTAAAAA Predicted gene structure (within gDNA segment 93007 to 90112): Exon 1 92397 92320 ( 78 n); cDNA 1 79 ( 79 n); score: 0.942 Intron 1 92319 92230 ( 90 n); Pd: 0.997 (s: 0.91), Pa: 0.998 (s: 1.00) Exon 2 92229 92148 ( 82 n); cDNA 80 161 ( 82 n); score: 1.000 Intron 2 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 3 92064 91892 ( 173 n); cDNA 162 334 ( 173 n); score: 1.000 Intron 3 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 91718 91608 ( 111 n); cDNA 335 445 ( 111 n); score: 1.000 Intron 4 91607 91427 ( 181 n); Pd: 0.985 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 5 91426 91310 ( 117 n); cDNA 446 562 ( 117 n); score: 1.000 Intron 5 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 6 91114 91043 ( 72 n); cDNA 563 634 ( 72 n); score: 1.000 Intron 6 91042 90934 ( 109 n); Pd: 0.988 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 7 90933 90752 ( 182 n); cDNA 635 816 ( 182 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E262239- 0.994 815 0.994 C PGS_C08SLe0084H03.1-_SGN-E262239- (92397 92320,92229 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90752) Alignment (genomic DNA sequence = upper lines): CCAGATGCCG TTCATGCAGT GCGGACTTTC ATCAGG-AAG CAACTGGCTT CTGAATTGAA 92339 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CCAGATGCCG TTCATGCAGT GCGGACTTTC ATCAGGAAAG CAACTGGCTT CTGAATTGAA 60 ACAAGAGTTC CTTATCACTG TAATCATCTC TCAAACTCTC AATTTTTATT TTTCTCAATT 92279 |||||||| | |||||||| ACAAGAGTCC NTTATCACT. .......... .......... .......... .......... 79 AACTTGAAAA CGTTCTTAAT GAAAATAAAC CTTGAAATAC ACTTTGCAGG CTAAAAACAA 92219 | |||||||||| .......... .......... .......... .......... .........G CTAAAAACAA 90 CAGGAGCTCT GGTGCTTATG AGTTTGATCA TAACAATATG GCACGTCGTG CTCTTAAAAA 92159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGAGCTCT GGTGCTTATG AGTTTGATCA TAACAATATG GCACGTCGTG CTCTTAAAAA 150 TATTGCTCTT GGTCTGTTTG TCTTCTCATC TTTCTCAATA GAGTATTTTT AGAATTTGAC 92099 |||||||||| | TATTGCTCTT G......... .......... .......... .......... .......... 161 AAATTACAAT TCCACTGACC TATTTTGTCT ACAGCTTATC TTGGATCACT TGAAAACCCA 92039 |||||| |||||||||| |||||||||| .......... .......... .......... ....CTTATC TTGGATCACT TGAAAACCCA 187 GAAATCACAG AACTTCTATT GAATGAATAC AGAAACGCCA CAAACATGAC AGATCAGTTT 91979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATCACAG AACTTCTATT GAATGAATAC AGAAACGCCA CAAACATGAC AGATCAGTTT 247 GCAGCTTTAG TGGCTATCGA TCAGCAACCT GCAATTCGTG AAGAAATTTT GGCTGATTTC 91919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTTTAG TGGCTATCGA TCAGCAACCT GCAATTCGTG AAGAAATTTT GGCTGATTTC 307 TATAACAAGT GGCAGGATGA TTACTTGGTA CATCTCTATG CCTCTAATAC CTGACTGTCA 91859 |||||||||| |||||||||| ||||||| TATAACAAGT GGCAGGATGA TTACTTG... .......... .......... .......... 334 TCTTTGACCG TAATTCTTGT CTACCGGATC TGTTCTTGCC TTCAAATTGT TGAGTAAAAC 91799 .......... .......... .......... .......... .......... .......... 334 CTGCATGACG TCGAATCATT CATAACTCAG AGGGAAACTA AAAAATCTAA AAATTCTTAT 91739 .......... .......... .......... .......... .......... .......... 334 CTCACTATAT TTTTCCGTAG GTTGTGAACA AGTGGCTTGC TCTTCAAGCT ATGTCAGACA 91679 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTTGTGAACA AGTGGCTTGC TCTTCAAGCT ATGTCAGACA 374 TGCCTGGTAA TGTTGAGAAT GTCAAGAAAC TTCTAAACCA TACAGCCTTT GACCTATGTA 91619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTGGTAA TGTTGAGAAT GTCAAGAAAC TTCTAAACCA TACAGCCTTT GACCTATGTA 434 ATCCAAATAA GGTATGTTTT TTCGAGTTTG ATGTCTTTCG TACTCTTCAA AAAAGCCAGT 91559 |||||||||| | ATCCAAATAA G......... .......... .......... .......... .......... 445 GGATGTGCCG GATCCTCCAA AAGGGGCGCA CTTTTGGAGG ATCTGACCTG GGTACGGAAA 91499 .......... .......... .......... .......... .......... .......... 445 CATTAGCAAC CTATAGCTTT CTAGTTTATG TCAATTACAA GACATGATGT TTTATTTTGG 91439 .......... .......... .......... .......... .......... .......... 445 ACAAATGCAC AGGTTTATTC GTTGATCGGA GGATTTTGTG GTTCACCTGT CAACTTCCAT 91379 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTTTATTC GTTGATCGGA GGATTTTGTG GTTCACCTGT CAACTTCCAT 493 AGCAAGGATG GCTCCGGCTA CAAGTTCTTG GGAGAACTAG TGGTGAAGCT TGACAAGATG 91319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAGGATG GCTCCGGCTA CAAGTTCTTG GGAGAACTAG TGGTGAAGCT TGACAAGATG 553 AATCCACAGG TCTCTTACAT TACTATTTCA ATTGCTTTTG ATACAATTCA CCAATGAATC 91259 ||||||||| AATCCACAG. .......... .......... .......... .......... .......... 562 ACGAAACACT ATTTGTTCTT GAAAGAAAAA GCTTGAACAC GACCACTCAT GATCCATCTT 91199 .......... .......... .......... .......... .......... .......... 562 GGTCAATCCG ATCTTGAACT AAAGGACGGT TTTCCAGTAG CAACAAGCGT GTGTCTTAGC 91139 .......... .......... .......... .......... .......... .......... 562 TATTCTTCTT CTAATGGATG GCAGGTGGCT TCACGAATGG TTTCAGCGTT CTCCAGGTGG 91079 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTGGCT TCACGAATGG TTTCAGCGTT CTCCAGGTGG 598 AAACGTTATG ATGAAACAAG ACAGAGTCTC GCGAAGGTAA GTAATTGCTT TCCTTAGACG 91019 |||||||||| |||||||||| |||||||||| |||||| AAACGTTATG ATGAAACAAG ACAGAGTCTC GCGAAG.... .......... .......... 634 TTCTTCCGGG GAGAAGTTCC CTTCGAGTAT TGTGTTTGCA TAGAAAGGTT GGAAAGTAAA 90959 .......... .......... .......... .......... .......... .......... 634 GAAATATATT ATTGTGTTAA AACAGGAACA ATTGGAGATG ATCTTGTCTA CTGAGGGACT 90899 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GAACA ATTGGAGATG ATCTTGTCTA CTGAGGGACT 669 CTCAGAGAAT GTGTTTGAAA TCGCATCGAA GAGCTTGGCA GCTTGATTTT TATATTTTTG 90839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAGAAT GTGTTTGAAA TCGCATCGAA GAGCTTGGCA GCTTGATTTT TATATTTTTG 729 GTTTCATTTT TCAGTTATTT GAACCGTGCT CTATTTGTTC CAAAGAGTTT ATAATTATGT 90779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCATTTT TCAGTTATTT GAACCGTGCT CTATTTGTTC CAAAGAGTTT ATAATTATGT 789 AATGGTTTCA GTAAACATTA AAACTTA 90752 |||||||||| |||||||||| ||||||| AATGGTTTCA GTAAACATTA AAACTTA 816 hqPGS_C08SLe0084H03.1-_SGN-E262239- (92397 92320,92229 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90752) ******************************************************************************** EST sequence 225 +strand 418 n (File: SGN-E246816+) 1 TAAACCATAC AGCCTTTGAC CTATGTAATC CAAATAAGGT TTATTCGTTG ATCGGAGGAT 61 TTTGTGGTTC ACCTGTCAAC TTCCATAGCA AGGATGGCTC CGGCTACAAG TTCTTGGGAG 121 AACTAGTGGT GAAGCTTGAC AAGATGAATC CACAGGTGGC TTCACGAATG GTTTCAGCGT 181 TCTCCACGTG GAAACGTTAT GATGAAACAA GACAGAGTCT CGCGAAGGAA CAATTGGAGA 241 TGATCTTGTC TACTGAGGGA CTCTCAGAGA ATGTGTGTGA AATCGCATCG AAGAGCTTGG 301 CAGCTTGATT TTTATATTTT TGGCTTCATT TCTCAGCTAT TTGAACCGTG CTCTATTTGT 361 TCCAAAGAGT TTATAATTAT GTAATGGTCT CAGTGAACAT TAAAACTTAC AAAAAAAA Predicted gene structure (within gDNA segment 92245 to 89863): Exon 1 91645 91608 ( 38 n); cDNA 1 38 ( 38 n); score: 1.000 Intron 1 91607 91427 ( 181 n); Pd: 0.985 (s: 0), Pa: 0.984 (s: 1.00) Exon 2 91426 91310 ( 117 n); cDNA 39 155 ( 117 n); score: 1.000 Intron 2 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 0.98) Exon 3 91114 91043 ( 72 n); cDNA 156 227 ( 72 n); score: 0.986 Intron 3 91042 90934 ( 109 n); Pd: 0.988 (s: 0.98), Pa: 0.982 (s: 0.98) Exon 4 90933 90752 ( 182 n); cDNA 228 409 ( 182 n); score: 0.967 MATCH C08SLe0084H03.1- SGN-E246816+ 0.981 409 0.978 C PGS_C08SLe0084H03.1-_SGN-E246816+ (91645 91608,91426 91310,91114 91043,90933 90752) Alignment (genomic DNA sequence = upper lines): TAAACCATAC AGCCTTTGAC CTATGTAATC CAAATAAGGT ATGTTTTTTC GAGTTTGATG 91586 |||||||||| |||||||||| |||||||||| |||||||| TAAACCATAC AGCCTTTGAC CTATGTAATC CAAATAAG.. .......... .......... 38 TCTTTCGTAC TCTTCAAAAA AGCCAGTGGA TGTGCCGGAT CCTCCAAAAG GGGCGCACTT 91526 .......... .......... .......... .......... .......... .......... 38 TTGGAGGATC TGACCTGGGT ACGGAAACAT TAGCAACCTA TAGCTTTCTA GTTTATGTCA 91466 .......... .......... .......... .......... .......... .......... 38 ATTACAAGAC ATGATGTTTT ATTTTGGACA AATGCACAGG TTTATTCGTT GATCGGAGGA 91406 | |||||||||| |||||||||| .......... .......... .......... .........G TTTATTCGTT GATCGGAGGA 59 TTTTGTGGTT CACCTGTCAA CTTCCATAGC AAGGATGGCT CCGGCTACAA GTTCTTGGGA 91346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTGGTT CACCTGTCAA CTTCCATAGC AAGGATGGCT CCGGCTACAA GTTCTTGGGA 119 GAACTAGTGG TGAAGCTTGA CAAGATGAAT CCACAGGTCT CTTACATTAC TATTTCAATT 91286 |||||||||| |||||||||| |||||||||| |||||| GAACTAGTGG TGAAGCTTGA CAAGATGAAT CCACAG.... .......... .......... 155 GCTTTTGATA CAATTCACCA ATGAATCACG AAACACTATT TGTTCTTGAA AGAAAAAGCT 91226 .......... .......... .......... .......... .......... .......... 155 TGAACACGAC CACTCATGAT CCATCTTGGT CAATCCGATC TTGAACTAAA GGACGGTTTT 91166 .......... .......... .......... .......... .......... .......... 155 CCAGTAGCAA CAAGCGTGTG TCTTAGCTAT TCTTCTTCTA ATGGATGGCA GGTGGCTTCA 91106 ||||||||| .......... .......... .......... .......... .......... .GTGGCTTCA 164 CGAATGGTTT CAGCGTTCTC CAGGTGGAAA CGTTATGATG AAACAAGACA GAGTCTCGCG 91046 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CGAATGGTTT CAGCGTTCTC CACGTGGAAA CGTTATGATG AAACAAGACA GAGTCTCGCG 224 AAGGTAAGTA ATTGCTTTCC TTAGACGTTC TTCCGGGGAG AAGTTCCCTT CGAGTATTGT 90986 ||| AAG....... .......... .......... .......... .......... .......... 227 GTTTGCATAG AAAGGTTGGA AAGTAAAGAA ATATATTATT GTGTTAAAAC AGGAACAATT 90926 |||||||| .......... .......... .......... .......... .......... ..GAACAATT 235 GGAGATGATC TTGTCTACTG AGGGACTCTC AGAGAATGTG TTTGAAATCG CATCGAAGAG 90866 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GGAGATGATC TTGTCTACTG AGGGACTCTC AGAGAATGTG TGTGAAATCG CATCGAAGAG 295 CTTGGCAGCT TGATTTTTAT ATTTTTGGTT TCATTTTTCA GTTATTTGAA CCGTGCTCTA 90806 |||||||||| |||||||||| |||||||| | |||||| ||| | |||||||| |||||||||| CTTGGCAGCT TGATTTTTAT ATTTTTGGCT TCATTTCTCA GCTATTTGAA CCGTGCTCTA 355 TTTGTTCCAA AGAGTTTATA ATTATGTAAT GGTTTCAGTA AACATTAAAA CTTA 90752 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||| TTTGTTCCAA AGAGTTTATA ATTATGTAAT GGTCTCAGTG AACATTAAAA CTTA 409 hqPGS_C08SLe0084H03.1-_SGN-E246816+ (91645 91608,91426 91310,91114 91043,90933 90752) ******************************************************************************** EST sequence 172 +strand 630 n (File: SGN-E347400+) 1 TCTTAAAAAT ATTGCTCTTG CTTATCTTGG ATCACTTGAA AACCCAGAAA TCACAGAACT 61 TCTATTGAAT GAATACAGAA ACGCCACAAA CATGACAGAT CAGTTTGCAG CTTTAGTGGC 121 TATCGATCAG CAACCTGCAA TTCGTGAAGA AATTTTGGCT GATTTCTATA ACAAGTGGCA 181 GGATGATTAC TTGGTTGTGA ACAAGTGGCT TGCTCTTCAA GCTATGTCAG ACATGCCTGG 241 TAATGTTGAG AATGTCAAGA AACTTCTAAA CCATACAGCC TTTGACCTAT GTAATCCAAA 301 TAAGGTTTAT TCGTTGATCG GAGGATTTTG TGGTTCACCT GTCAACTTCC ATAGCAAGGA 361 TGGCTCCGGC TACAAGTTCT TGGGAGAACT AGTGGTGAAG CTTGACAAGA TGAATCCACA 421 GGTGGCTTCA CGAATGGTTT CAGCGTTCTC CAGGTGGAAA CGTTATGATG AAACAAGACA 481 GAGTCTCGCG AAGGAACAAT TGGAGATGAT CTTGTCTACT GAGGGACTCT CAGAGAATGT 541 GTTTGAAATC GCATCGAAGA GCTTGGCAGC TTGATTTTTA TATTTTTGGT TTCATTTTTC 601 AGTTATTTGA ACCGTGCTCT ATTTGTTCCA Predicted gene structure (within gDNA segment 92855 to 90187): Exon 1 92167 92148 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 92147 92065 ( 83 n); Pd: 0.993 (s: 0), Pa: 0.957 (s: 1.00) Exon 2 92064 91892 ( 173 n); cDNA 21 193 ( 173 n); score: 1.000 Intron 2 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 91718 91608 ( 111 n); cDNA 194 304 ( 111 n); score: 1.000 Intron 3 91607 91427 ( 181 n); Pd: 0.985 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 91426 91310 ( 117 n); cDNA 305 421 ( 117 n); score: 1.000 Intron 4 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 5 91114 91043 ( 72 n); cDNA 422 493 ( 72 n); score: 1.000 Intron 5 91042 90934 ( 109 n); Pd: 0.988 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 6 90933 90797 ( 137 n); cDNA 494 630 ( 137 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E347400+ 1.000 630 1.000 C PGS_C08SLe0084H03.1-_SGN-E347400+ (92167 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90797) Alignment (genomic DNA sequence = upper lines): TCTTAAAAAT ATTGCTCTTG GTCTGTTTGT CTTCTCATCT TTCTCAATAG AGTATTTTTA 92108 |||||||||| |||||||||| TCTTAAAAAT ATTGCTCTTG .......... .......... .......... .......... 20 GAATTTGACA AATTACAATT CCACTGACCT ATTTTGTCTA CAGCTTATCT TGGATCACTT 92048 ||||||| |||||||||| .......... .......... .......... .......... ...CTTATCT TGGATCACTT 37 GAAAACCCAG AAATCACAGA ACTTCTATTG AATGAATACA GAAACGCCAC AAACATGACA 91988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAACCCAG AAATCACAGA ACTTCTATTG AATGAATACA GAAACGCCAC AAACATGACA 97 GATCAGTTTG CAGCTTTAGT GGCTATCGAT CAGCAACCTG CAATTCGTGA AGAAATTTTG 91928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAGTTTG CAGCTTTAGT GGCTATCGAT CAGCAACCTG CAATTCGTGA AGAAATTTTG 157 GCTGATTTCT ATAACAAGTG GCAGGATGAT TACTTGGTAC ATCTCTATGC CTCTAATACC 91868 |||||||||| |||||||||| |||||||||| |||||| GCTGATTTCT ATAACAAGTG GCAGGATGAT TACTTG.... .......... .......... 193 TGACTGTCAT CTTTGACCGT AATTCTTGTC TACCGGATCT GTTCTTGCCT TCAAATTGTT 91808 .......... .......... .......... .......... .......... .......... 193 GAGTAAAACC TGCATGACGT CGAATCATTC ATAACTCAGA GGGAAACTAA AAAATCTAAA 91748 .......... .......... .......... .......... .......... .......... 193 AATTCTTATC TCACTATATT TTTCCGTAGG TTGTGAACAA GTGGCTTGCT CTTCAAGCTA 91688 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTGTGAACAA GTGGCTTGCT CTTCAAGCTA 224 TGTCAGACAT GCCTGGTAAT GTTGAGAATG TCAAGAAACT TCTAAACCAT ACAGCCTTTG 91628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAGACAT GCCTGGTAAT GTTGAGAATG TCAAGAAACT TCTAAACCAT ACAGCCTTTG 284 ACCTATGTAA TCCAAATAAG GTATGTTTTT TCGAGTTTGA TGTCTTTCGT ACTCTTCAAA 91568 |||||||||| |||||||||| ACCTATGTAA TCCAAATAAG .......... .......... .......... .......... 304 AAAGCCAGTG GATGTGCCGG ATCCTCCAAA AGGGGCGCAC TTTTGGAGGA TCTGACCTGG 91508 .......... .......... .......... .......... .......... .......... 304 GTACGGAAAC ATTAGCAACC TATAGCTTTC TAGTTTATGT CAATTACAAG ACATGATGTT 91448 .......... .......... .......... .......... .......... .......... 304 TTATTTTGGA CAAATGCACA GGTTTATTCG TTGATCGGAG GATTTTGTGG TTCACCTGTC 91388 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTTATTCG TTGATCGGAG GATTTTGTGG TTCACCTGTC 343 AACTTCCATA GCAAGGATGG CTCCGGCTAC AAGTTCTTGG GAGAACTAGT GGTGAAGCTT 91328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTCCATA GCAAGGATGG CTCCGGCTAC AAGTTCTTGG GAGAACTAGT GGTGAAGCTT 403 GACAAGATGA ATCCACAGGT CTCTTACATT ACTATTTCAA TTGCTTTTGA TACAATTCAC 91268 |||||||||| |||||||| GACAAGATGA ATCCACAG.. .......... .......... .......... .......... 421 CAATGAATCA CGAAACACTA TTTGTTCTTG AAAGAAAAAG CTTGAACACG ACCACTCATG 91208 .......... .......... .......... .......... .......... .......... 421 ATCCATCTTG GTCAATCCGA TCTTGAACTA AAGGACGGTT TTCCAGTAGC AACAAGCGTG 91148 .......... .......... .......... .......... .......... .......... 421 TGTCTTAGCT ATTCTTCTTC TAATGGATGG CAGGTGGCTT CACGAATGGT TTCAGCGTTC 91088 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTGGCTT CACGAATGGT TTCAGCGTTC 448 TCCAGGTGGA AACGTTATGA TGAAACAAGA CAGAGTCTCG CGAAGGTAAG TAATTGCTTT 91028 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCCAGGTGGA AACGTTATGA TGAAACAAGA CAGAGTCTCG CGAAG..... .......... 493 CCTTAGACGT TCTTCCGGGG AGAAGTTCCC TTCGAGTATT GTGTTTGCAT AGAAAGGTTG 90968 .......... .......... .......... .......... .......... .......... 493 GAAAGTAAAG AAATATATTA TTGTGTTAAA ACAGGAACAA TTGGAGATGA TCTTGTCTAC 90908 |||||| |||||||||| |||||||||| .......... .......... .......... ....GAACAA TTGGAGATGA TCTTGTCTAC 519 TGAGGGACTC TCAGAGAATG TGTTTGAAAT CGCATCGAAG AGCTTGGCAG CTTGATTTTT 90848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGGACTC TCAGAGAATG TGTTTGAAAT CGCATCGAAG AGCTTGGCAG CTTGATTTTT 579 ATATTTTTGG TTTCATTTTT CAGTTATTTG AACCGTGCTC TATTTGTTCC A 90797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ATATTTTTGG TTTCATTTTT CAGTTATTTG AACCGTGCTC TATTTGTTCC A 630 hqPGS_C08SLe0084H03.1-_SGN-E347400+ (92167 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90797) ******************************************************************************** EST sequence 179 +strand 559 n (File: SGN-E337363+) 1 GAGCTCTGGT GCTTATGAGT TTGATCATAA CAATATGGCA CGTCGTGCTC TTAAAAATAT 61 TGCTCTTGCT TATCTTGGAT CACTTGAAAA CCCAGAAATC ACAGAACTTC TATTGAATGA 121 ATACAGAAAC GCCACAAACA TGACAGATCA GTTTGCAGCT TTAGTGGCTA TCGATCAGCA 181 ACCTGCAATT CGTGAAGAAA TTTTGGCTGA TTTCTATAAC AAGTGGCAGG ATGATTACTT 241 GGTTGTGAAC AAGTGGCTTG CTCTTCAAGC TATGTCAGAC ATGCCTGGTA ATGTTGAGAA 301 TGTCAAGAAA CTTCTAAACC ATACAGCCTT TGACCTATGT AATCCAAATA AGGTTTATTC 361 GTTGATCGGA GGATTTTGTG GTTCACCTGT CAACTTCCAT AGCAAGGATG GCTCCGGCTA 421 CAAGTTCTTG GGAGAACTAG TGGTGAAGCT TGACAAGATG AATCCACAGG TGGCTTCACG 481 AATGGTTTCA GCGTTCTCCA GGTGGAAACG TTATGATGAA ACAAGACAGA GTCTCGCGAA 541 AGAACAATTG GAGATGATC Predicted gene structure (within gDNA segment 92815 to 90244): Exon 1 92215 92148 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 2 92064 91892 ( 173 n); cDNA 69 241 ( 173 n); score: 1.000 Intron 2 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 91718 91608 ( 111 n); cDNA 242 352 ( 111 n); score: 1.000 Intron 3 91607 91427 ( 181 n); Pd: 0.985 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 91426 91310 ( 117 n); cDNA 353 469 ( 117 n); score: 1.000 Intron 4 91309 91115 ( 195 n); Pd: 0.986 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 5 91114 91043 ( 72 n); cDNA 470 541 ( 72 n); score: 0.986 Intron 5 91042 90934 ( 109 n); Pd: 0.988 (s: 0.98), Pa: 0.982 (s: 0) Exon 6 90933 90916 ( 18 n); cDNA 542 559 ( 18 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E337363+ 0.998 559 1.000 C PGS_C08SLe0084H03.1-_SGN-E337363+ (92215 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90916) Alignment (genomic DNA sequence = upper lines): GAGCTCTGGT GCTTATGAGT TTGATCATAA CAATATGGCA CGTCGTGCTC TTAAAAATAT 92156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTCTGGT GCTTATGAGT TTGATCATAA CAATATGGCA CGTCGTGCTC TTAAAAATAT 60 TGCTCTTGGT CTGTTTGTCT TCTCATCTTT CTCAATAGAG TATTTTTAGA ATTTGACAAA 92096 |||||||| TGCTCTTG.. .......... .......... .......... .......... .......... 68 TTACAATTCC ACTGACCTAT TTTGTCTACA GCTTATCTTG GATCACTTGA AAACCCAGAA 92036 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CTTATCTTG GATCACTTGA AAACCCAGAA 97 ATCACAGAAC TTCTATTGAA TGAATACAGA AACGCCACAA ACATGACAGA TCAGTTTGCA 91976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAGAAC TTCTATTGAA TGAATACAGA AACGCCACAA ACATGACAGA TCAGTTTGCA 157 GCTTTAGTGG CTATCGATCA GCAACCTGCA ATTCGTGAAG AAATTTTGGC TGATTTCTAT 91916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTAGTGG CTATCGATCA GCAACCTGCA ATTCGTGAAG AAATTTTGGC TGATTTCTAT 217 AACAAGTGGC AGGATGATTA CTTGGTACAT CTCTATGCCT CTAATACCTG ACTGTCATCT 91856 |||||||||| |||||||||| |||| AACAAGTGGC AGGATGATTA CTTG...... .......... .......... .......... 241 TTGACCGTAA TTCTTGTCTA CCGGATCTGT TCTTGCCTTC AAATTGTTGA GTAAAACCTG 91796 .......... .......... .......... .......... .......... .......... 241 CATGACGTCG AATCATTCAT AACTCAGAGG GAAACTAAAA AATCTAAAAA TTCTTATCTC 91736 .......... .......... .......... .......... .......... .......... 241 ACTATATTTT TCCGTAGGTT GTGAACAAGT GGCTTGCTCT TCAAGCTATG TCAGACATGC 91676 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GTT GTGAACAAGT GGCTTGCTCT TCAAGCTATG TCAGACATGC 284 CTGGTAATGT TGAGAATGTC AAGAAACTTC TAAACCATAC AGCCTTTGAC CTATGTAATC 91616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTAATGT TGAGAATGTC AAGAAACTTC TAAACCATAC AGCCTTTGAC CTATGTAATC 344 CAAATAAGGT ATGTTTTTTC GAGTTTGATG TCTTTCGTAC TCTTCAAAAA AGCCAGTGGA 91556 |||||||| CAAATAAG.. .......... .......... .......... .......... .......... 352 TGTGCCGGAT CCTCCAAAAG GGGCGCACTT TTGGAGGATC TGACCTGGGT ACGGAAACAT 91496 .......... .......... .......... .......... .......... .......... 352 TAGCAACCTA TAGCTTTCTA GTTTATGTCA ATTACAAGAC ATGATGTTTT ATTTTGGACA 91436 .......... .......... .......... .......... .......... .......... 352 AATGCACAGG TTTATTCGTT GATCGGAGGA TTTTGTGGTT CACCTGTCAA CTTCCATAGC 91376 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TTTATTCGTT GATCGGAGGA TTTTGTGGTT CACCTGTCAA CTTCCATAGC 403 AAGGATGGCT CCGGCTACAA GTTCTTGGGA GAACTAGTGG TGAAGCTTGA CAAGATGAAT 91316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGATGGCT CCGGCTACAA GTTCTTGGGA GAACTAGTGG TGAAGCTTGA CAAGATGAAT 463 CCACAGGTCT CTTACATTAC TATTTCAATT GCTTTTGATA CAATTCACCA ATGAATCACG 91256 |||||| CCACAG.... .......... .......... .......... .......... .......... 469 AAACACTATT TGTTCTTGAA AGAAAAAGCT TGAACACGAC CACTCATGAT CCATCTTGGT 91196 .......... .......... .......... .......... .......... .......... 469 CAATCCGATC TTGAACTAAA GGACGGTTTT CCAGTAGCAA CAAGCGTGTG TCTTAGCTAT 91136 .......... .......... .......... .......... .......... .......... 469 TCTTCTTCTA ATGGATGGCA GGTGGCTTCA CGAATGGTTT CAGCGTTCTC CAGGTGGAAA 91076 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTGGCTTCA CGAATGGTTT CAGCGTTCTC CAGGTGGAAA 508 CGTTATGATG AAACAAGACA GAGTCTCGCG AAGGTAAGTA ATTGCTTTCC TTAGACGTTC 91016 |||||||||| |||||||||| |||||||||| || CGTTATGATG AAACAAGACA GAGTCTCGCG AAA....... .......... .......... 541 TTCCGGGGAG AAGTTCCCTT CGAGTATTGT GTTTGCATAG AAAGGTTGGA AAGTAAAGAA 90956 .......... .......... .......... .......... .......... .......... 541 ATATATTATT GTGTTAAAAC AGGAACAATT GGAGATGATC 90916 |||||||| |||||||||| .......... .......... ..GAACAATT GGAGATGATC 559 hqPGS_C08SLe0084H03.1-_SGN-E337363+ (92215 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90916) ******************************************************************************** EST sequence 248 +strand 520 n (File: SGN-E275104+) 1 GGAAGCAACT GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACTGCTAAA AACAACAGGA 61 GCTCTGGTGC TTATGAGTTT GATCATAACA ATATGGCACG TCGTGCTCTT AAAAATATTG 121 CTCTTGCTTA TCTTGGATCA CTTGAAAACC CAGAAATCAC AGAACTTCTA TTGAATGAAT 181 ACAGAAACGC CACAAACATG ACAGATCAGT TTGCAGCTTT AGTGGCTATC GATCAGCAAC 241 CTGCAATTCG TGAAGAAATT TTGGCTGATT TCTATAACAA GTGGCAGGAT GATTACTTGG 301 TTGTGAACAA GTGGCTTGCT CTTCAAGCTA TGTCAGACAT GCCTGGTAAT GTTGAGAATG 361 TCAAGAAACT TCTAAACCAT ACAGCCTTTG ACCTATGTAA TCCAAATAAG GTTTATTCGT 421 TGATCGGAGG ATTTTGTGGT TCACCTGTCA ACTTCCATAG CAAGGATGGC TCCGGCTACA 481 AGTTCTTGGG AGAACTAGTG GTGAAGCTTG ACAAGATGAA Predicted gene structure (within gDNA segment 92963 to 90707): Exon 1 92363 92320 ( 44 n); cDNA 1 44 ( 44 n); score: 1.000 Intron 1 92319 92230 ( 90 n); Pd: 0.997 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92229 92148 ( 82 n); cDNA 45 126 ( 82 n); score: 1.000 Intron 2 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 3 92064 91892 ( 173 n); cDNA 127 299 ( 173 n); score: 1.000 Intron 3 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 91718 91608 ( 111 n); cDNA 300 410 ( 111 n); score: 1.000 Intron 4 91607 91427 ( 181 n); Pd: 0.985 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 5 91426 91317 ( 110 n); cDNA 411 520 ( 110 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E275104+ 1.000 520 1.000 C PGS_C08SLe0084H03.1-_SGN-E275104+ (92363 92320,92229 92148,92064 91892,91718 91608,91426 91317) Alignment (genomic DNA sequence = upper lines): GGAAGCAACT GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACTGTAATC ATCTCTCAAA 92304 |||||||||| |||||||||| |||||||||| |||||||||| |||| GGAAGCAACT GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACT...... .......... 44 CTCTCAATTT TTATTTTTCT CAATTAACTT GAAAACGTTC TTAATGAAAA TAAACCTTGA 92244 .......... .......... .......... .......... .......... .......... 44 AATACACTTT GCAGGCTAAA AACAACAGGA GCTCTGGTGC TTATGAGTTT GATCATAACA 92184 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GCTAAA AACAACAGGA GCTCTGGTGC TTATGAGTTT GATCATAACA 90 ATATGGCACG TCGTGCTCTT AAAAATATTG CTCTTGGTCT GTTTGTCTTC TCATCTTTCT 92124 |||||||||| |||||||||| |||||||||| |||||| ATATGGCACG TCGTGCTCTT AAAAATATTG CTCTTG.... .......... .......... 126 CAATAGAGTA TTTTTAGAAT TTGACAAATT ACAATTCCAC TGACCTATTT TGTCTACAGC 92064 | .......... .......... .......... .......... .......... .........C 127 TTATCTTGGA TCACTTGAAA ACCCAGAAAT CACAGAACTT CTATTGAATG AATACAGAAA 92004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCTTGGA TCACTTGAAA ACCCAGAAAT CACAGAACTT CTATTGAATG AATACAGAAA 187 CGCCACAAAC ATGACAGATC AGTTTGCAGC TTTAGTGGCT ATCGATCAGC AACCTGCAAT 91944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCACAAAC ATGACAGATC AGTTTGCAGC TTTAGTGGCT ATCGATCAGC AACCTGCAAT 247 TCGTGAAGAA ATTTTGGCTG ATTTCTATAA CAAGTGGCAG GATGATTACT TGGTACATCT 91884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TCGTGAAGAA ATTTTGGCTG ATTTCTATAA CAAGTGGCAG GATGATTACT TG........ 299 CTATGCCTCT AATACCTGAC TGTCATCTTT GACCGTAATT CTTGTCTACC GGATCTGTTC 91824 .......... .......... .......... .......... .......... .......... 299 TTGCCTTCAA ATTGTTGAGT AAAACCTGCA TGACGTCGAA TCATTCATAA CTCAGAGGGA 91764 .......... .......... .......... .......... .......... .......... 299 AACTAAAAAA TCTAAAAATT CTTATCTCAC TATATTTTTC CGTAGGTTGT GAACAAGTGG 91704 ||||| |||||||||| .......... .......... .......... .......... .....GTTGT GAACAAGTGG 314 CTTGCTCTTC AAGCTATGTC AGACATGCCT GGTAATGTTG AGAATGTCAA GAAACTTCTA 91644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCTCTTC AAGCTATGTC AGACATGCCT GGTAATGTTG AGAATGTCAA GAAACTTCTA 374 AACCATACAG CCTTTGACCT ATGTAATCCA AATAAGGTAT GTTTTTTCGA GTTTGATGTC 91584 |||||||||| |||||||||| |||||||||| |||||| AACCATACAG CCTTTGACCT ATGTAATCCA AATAAG.... .......... .......... 410 TTTCGTACTC TTCAAAAAAG CCAGTGGATG TGCCGGATCC TCCAAAAGGG GCGCACTTTT 91524 .......... .......... .......... .......... .......... .......... 410 GGAGGATCTG ACCTGGGTAC GGAAACATTA GCAACCTATA GCTTTCTAGT TTATGTCAAT 91464 .......... .......... .......... .......... .......... .......... 410 TACAAGACAT GATGTTTTAT TTTGGACAAA TGCACAGGTT TATTCGTTGA TCGGAGGATT 91404 ||| |||||||||| |||||||||| .......... .......... .......... .......GTT TATTCGTTGA TCGGAGGATT 433 TTGTGGTTCA CCTGTCAACT TCCATAGCAA GGATGGCTCC GGCTACAAGT TCTTGGGAGA 91344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTTCA CCTGTCAACT TCCATAGCAA GGATGGCTCC GGCTACAAGT TCTTGGGAGA 493 ACTAGTGGTG AAGCTTGACA AGATGAA 91317 |||||||||| |||||||||| ||||||| ACTAGTGGTG AAGCTTGACA AGATGAA 520 hqPGS_C08SLe0084H03.1-_SGN-E275104+ (92363 92320,92229 92148,92064 91892,91718 91608,91426 91317) ******************************************************************************** EST sequence 189 +strand 445 n (File: SGN-E272827+) 1 TTTGATCATA ACAATATGGC ACGTCGTGCT CTTAAAAATA TTGCTCTTGC TTATCTTGGA 61 TCACTTGAAA ACCCAGAAAT CACAGAACTT CTATTGAATG AATACAGAAA CGCCACAAAC 121 ATGACAGATC AGTTTGCAGC TTTAGTGGCT ATCGATCAGC AACCTGCAAT TCGTGAAGAA 181 ATTTTGGCTG ATTTCTATAA CAAGTGGCAG GATGATTACT TGGTTGTGAA CCAAGTGGCT 241 TGCTCTTCAA GCTATGTCAG ACATGCCTGG TAATGTTGAG AATGTCAAGA AACTTCTAAA 301 CCATACAGCC TTTGACCTAT GTAATCCAAA TAAGGTTTAT TCGTTGATCG GAGGATTTTG 361 TGGTTCACCT GTCAACTTCC ATAGCAAGGA TGGCTCCGGC TACAAGTTCT TGGGAGAACT 421 AGTGGTGAAG CTTGACAAGA TGAAA Predicted gene structure (within gDNA segment 92796 to 90697): Exon 1 92196 92148 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 2 92064 91892 ( 173 n); cDNA 50 222 ( 173 n); score: 1.000 Intron 2 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 0.95) Exon 3 91718 91608 ( 111 n); cDNA 223 334 ( 112 n); score: 0.977 Intron 3 91607 91427 ( 181 n); Pd: 0.985 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 91426 91317 ( 110 n); cDNA 335 444 ( 110 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E272827+ 0.994 443 0.996 C PGS_C08SLe0084H03.1-_SGN-E272827+ (92196 92148,92064 91892,91718 91608,91426 91317) Alignment (genomic DNA sequence = upper lines): TTTGATCATA ACAATATGGC ACGTCGTGCT CTTAAAAATA TTGCTCTTGG TCTGTTTGTC 92137 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTGATCATA ACAATATGGC ACGTCGTGCT CTTAAAAATA TTGCTCTTG. .......... 49 TTCTCATCTT TCTCAATAGA GTATTTTTAG AATTTGACAA ATTACAATTC CACTGACCTA 92077 .......... .......... .......... .......... .......... .......... 49 TTTTGTCTAC AGCTTATCTT GGATCACTTG AAAACCCAGA AATCACAGAA CTTCTATTGA 92017 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CTTATCTT GGATCACTTG AAAACCCAGA AATCACAGAA CTTCTATTGA 97 ATGAATACAG AAACGCCACA AACATGACAG ATCAGTTTGC AGCTTTAGTG GCTATCGATC 91957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAATACAG AAACGCCACA AACATGACAG ATCAGTTTGC AGCTTTAGTG GCTATCGATC 157 AGCAACCTGC AATTCGTGAA GAAATTTTGG CTGATTTCTA TAACAAGTGG CAGGATGATT 91897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACCTGC AATTCGTGAA GAAATTTTGG CTGATTTCTA TAACAAGTGG CAGGATGATT 217 ACTTGGTACA TCTCTATGCC TCTAATACCT GACTGTCATC TTTGACCGTA ATTCTTGTCT 91837 ||||| ACTTG..... .......... .......... .......... .......... .......... 222 ACCGGATCTG TTCTTGCCTT CAAATTGTTG AGTAAAACCT GCATGACGTC GAATCATTCA 91777 .......... .......... .......... .......... .......... .......... 222 TAACTCAGAG GGAAACTAAA AAATCTAAAA ATTCTTATCT CACTATATTT TTCCGTAGGT 91717 || .......... .......... .......... .......... .......... ........GT 224 TGTGAA-CAA GTGGCTTGCT CTTCAAGCTA TGTCAGACAT GCCTGGTAAT GTTGAGAATG 91658 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAACCAA GTGGCTTGCT CTTCAAGCTA TGTCAGACAT GCCTGGTAAT GTTGAGAATG 284 TCAAGAAACT TCTAAACCAT ACAGCCTTTG ACCTATGTAA TCCAAATAAG GTATGTTTTT 91598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAAACT TCTAAACCAT ACAGCCTTTG ACCTATGTAA TCCAAATAAG .......... 334 TCGAGTTTGA TGTCTTTCGT ACTCTTCAAA AAAGCCAGTG GATGTGCCGG ATCCTCCAAA 91538 .......... .......... .......... .......... .......... .......... 334 AGGGGCGCAC TTTTGGAGGA TCTGACCTGG GTACGGAAAC ATTAGCAACC TATAGCTTTC 91478 .......... .......... .......... .......... .......... .......... 334 TAGTTTATGT CAATTACAAG ACATGATGTT TTATTTTGGA CAAATGCACA GGTTTATTCG 91418 ||||||||| .......... .......... .......... .......... .......... .GTTTATTCG 343 TTGATCGGAG GATTTTGTGG TTCACCTGTC AACTTCCATA GCAAGGATGG CTCCGGCTAC 91358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCGGAG GATTTTGTGG TTCACCTGTC AACTTCCATA GCAAGGATGG CTCCGGCTAC 403 AAGTTCTTGG GAGAACTAGT GGTGAAGCTT GACAAGATGA A 91317 |||||||||| |||||||||| |||||||||| |||||||||| | AAGTTCTTGG GAGAACTAGT GGTGAAGCTT GACAAGATGA A 444 hqPGS_C08SLe0084H03.1-_SGN-E272827+ (92196 92148,92064 91892,91718 91608,91426 91317) ******************************************************************************** EST sequence 240 +strand 245 n (File: SGN-E236303+) 1 TTCTATTGAA TGAATACAGA AACGCCACAA ACATGACAGA TCAGTTTGCA GCTTTAGTGG 61 CTATCGATCA GCAACCTGCA ATTCGTGAAG AAATTTTGGC TGATTTCTAT AACAAGTGGC 121 AGGATGATTA CTTGGTTGTG AACAAGTGGC TTGCTCTTCA AGCTATGTCA GACATGCCTG 181 GTAATGTTGA GAATGTCAAG AAACTTCTAA ACCATACAGC CTTTGACCTA TGTAATCCAA 241 ATAAG Predicted gene structure (within gDNA segment 92625 to 90998): Exon 1 92025 91892 ( 134 n); cDNA 1 134 ( 134 n); score: 1.000 Intron 1 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 91718 91608 ( 111 n); cDNA 135 245 ( 111 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E236303+ 1.000 245 1.000 C PGS_C08SLe0084H03.1-_SGN-E236303+ (92025 91892,91718 91608) Alignment (genomic DNA sequence = upper lines): TTCTATTGAA TGAATACAGA AACGCCACAA ACATGACAGA TCAGTTTGCA GCTTTAGTGG 91966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTATTGAA TGAATACAGA AACGCCACAA ACATGACAGA TCAGTTTGCA GCTTTAGTGG 60 CTATCGATCA GCAACCTGCA ATTCGTGAAG AAATTTTGGC TGATTTCTAT AACAAGTGGC 91906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCGATCA GCAACCTGCA ATTCGTGAAG AAATTTTGGC TGATTTCTAT AACAAGTGGC 120 AGGATGATTA CTTGGTACAT CTCTATGCCT CTAATACCTG ACTGTCATCT TTGACCGTAA 91846 |||||||||| |||| AGGATGATTA CTTG...... .......... .......... .......... .......... 134 TTCTTGTCTA CCGGATCTGT TCTTGCCTTC AAATTGTTGA GTAAAACCTG CATGACGTCG 91786 .......... .......... .......... .......... .......... .......... 134 AATCATTCAT AACTCAGAGG GAAACTAAAA AATCTAAAAA TTCTTATCTC ACTATATTTT 91726 .......... .......... .......... .......... .......... .......... 134 TCCGTAGGTT GTGAACAAGT GGCTTGCTCT TCAAGCTATG TCAGACATGC CTGGTAATGT 91666 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTT GTGAACAAGT GGCTTGCTCT TCAAGCTATG TCAGACATGC CTGGTAATGT 187 TGAGAATGTC AAGAAACTTC TAAACCATAC AGCCTTTGAC CTATGTAATC CAAATAAG 91608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGAGAATGTC AAGAAACTTC TAAACCATAC AGCCTTTGAC CTATGTAATC CAAATAAG 245 hqPGS_C08SLe0084H03.1-_SGN-E236303+ (92025 91892,91718 91608) ******************************************************************************** EST sequence 249 +strand 445 n (File: SGN-E287751+) 1 TGATCCAGAT GCCGTTCATG CAGTGCGGAC TTTCATCAGG AAGCAACTGG CTTCTGAATT 61 GAAACAAGAG TTCCTTATCA CTGCTAAAAA CAACAGGAGC TCTGGTGCTT ATGAGTTTGA 121 TCATAACAAT ATGGCACGTC GTGCTCTTAA AAATATTGCT CTTGCTTATC TTGGATCACT 181 TGAAAACCCA GAAATCACAG AACTTCTATT GAATGAATAC AGAAACGCCA CAAACATGAC 241 AGATCAGTTT GCAGCTTTAG TGGCTATCGA TCAGCAACCT GCAATTCGTG AAGAAATTTT 301 GGCTGATTTC TATAACAAGT GGCAGGATGA TTACTTGGTT GTGAACAAGT GGCTTGCTCT 361 TCAAGCTATG TCAGACATGC CTGGTAATGT TGAGAATGTC AAGAAACTTC TAAACCATAC 421 AGCCTTTGAC CTATGTAATC CAAAT Predicted gene structure (within gDNA segment 93001 to 91001): Exon 1 92401 92320 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 92319 92230 ( 90 n); Pd: 0.997 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92229 92148 ( 82 n); cDNA 83 164 ( 82 n); score: 1.000 Intron 2 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 3 92064 91892 ( 173 n); cDNA 165 337 ( 173 n); score: 1.000 Intron 3 91891 91719 ( 173 n); Pd: 0.891 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 91718 91611 ( 108 n); cDNA 338 445 ( 108 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E287751+ 1.000 445 1.000 C PGS_C08SLe0084H03.1-_SGN-E287751+ (92401 92320,92229 92148,92064 91892,91718 91611) Alignment (genomic DNA sequence = upper lines): TGATCCAGAT GCCGTTCATG CAGTGCGGAC TTTCATCAGG AAGCAACTGG CTTCTGAATT 92342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCCAGAT GCCGTTCATG CAGTGCGGAC TTTCATCAGG AAGCAACTGG CTTCTGAATT 60 GAAACAAGAG TTCCTTATCA CTGTAATCAT CTCTCAAACT CTCAATTTTT ATTTTTCTCA 92282 |||||||||| |||||||||| || GAAACAAGAG TTCCTTATCA CT........ .......... .......... .......... 82 ATTAACTTGA AAACGTTCTT AATGAAAATA AACCTTGAAA TACACTTTGC AGGCTAAAAA 92222 |||||||| .......... .......... .......... .......... .......... ..GCTAAAAA 90 CAACAGGAGC TCTGGTGCTT ATGAGTTTGA TCATAACAAT ATGGCACGTC GTGCTCTTAA 92162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAGGAGC TCTGGTGCTT ATGAGTTTGA TCATAACAAT ATGGCACGTC GTGCTCTTAA 150 AAATATTGCT CTTGGTCTGT TTGTCTTCTC ATCTTTCTCA ATAGAGTATT TTTAGAATTT 92102 |||||||||| |||| AAATATTGCT CTTG...... .......... .......... .......... .......... 164 GACAAATTAC AATTCCACTG ACCTATTTTG TCTACAGCTT ATCTTGGATC ACTTGAAAAC 92042 ||| |||||||||| |||||||||| .......... .......... .......... .......CTT ATCTTGGATC ACTTGAAAAC 187 CCAGAAATCA CAGAACTTCT ATTGAATGAA TACAGAAACG CCACAAACAT GACAGATCAG 91982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAAATCA CAGAACTTCT ATTGAATGAA TACAGAAACG CCACAAACAT GACAGATCAG 247 TTTGCAGCTT TAGTGGCTAT CGATCAGCAA CCTGCAATTC GTGAAGAAAT TTTGGCTGAT 91922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCAGCTT TAGTGGCTAT CGATCAGCAA CCTGCAATTC GTGAAGAAAT TTTGGCTGAT 307 TTCTATAACA AGTGGCAGGA TGATTACTTG GTACATCTCT ATGCCTCTAA TACCTGACTG 91862 |||||||||| |||||||||| |||||||||| TTCTATAACA AGTGGCAGGA TGATTACTTG .......... .......... .......... 337 TCATCTTTGA CCGTAATTCT TGTCTACCGG ATCTGTTCTT GCCTTCAAAT TGTTGAGTAA 91802 .......... .......... .......... .......... .......... .......... 337 AACCTGCATG ACGTCGAATC ATTCATAACT CAGAGGGAAA CTAAAAAATC TAAAAATTCT 91742 .......... .......... .......... .......... .......... .......... 337 TATCTCACTA TATTTTTCCG TAGGTTGTGA ACAAGTGGCT TGCTCTTCAA GCTATGTCAG 91682 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTTGTGA ACAAGTGGCT TGCTCTTCAA GCTATGTCAG 374 ACATGCCTGG TAATGTTGAG AATGTCAAGA AACTTCTAAA CCATACAGCC TTTGACCTAT 91622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGCCTGG TAATGTTGAG AATGTCAAGA AACTTCTAAA CCATACAGCC TTTGACCTAT 434 GTAATCCAAA T 91611 |||||||||| | GTAATCCAAA T 445 hqPGS_C08SLe0084H03.1-_SGN-E287751+ (92401 92320,92229 92148,92064 91892,91718 91611) ******************************************************************************** EST sequence 222 +strand 597 n (File: SGN-E246874+) 1 GAGTTTAACC GGTGGGAGGC GGGACAAGTG TTGGCAAGGA AGTTGATGCT CAGTCTGGTA 61 GCTGATTTCC AACAGAATAA GGCTTTGGTT CTTAACCCTC AGTTTTTGCA GGGGATCAAA 121 AGCATACTCA CCGACTCAAG CTTGGATAAG GAATTCATTG CAAAGGCAAT AACTTTGCCT 181 GGTATAGGAG AAATCATGGA CATGATGACG GTTGCTGATC CAGATGCCGT TCATGCAGTG 241 CGGACTTTCA TCAGGAAGCA ACTGGCTTCT GAATTGAAAC AAGAGTTCCT TATCACTGCT 301 AAAAACAACA GGAGCTCTGG TGCTTATGAG TTTGATCATA ACAATATGGC ACGTCGTGCT 361 CTTAAAAATA TTGCTCTTGC TTATCTTGGA TCACTTGAAA ACCCAGAAAT CACAGAACTT 421 CTATTGAATG AATACAGAAA CGCCACAAAC ATGACAGATC AGTTTGCAGC TTTAGTGGCT 481 ATCGATCAGC AACCTGCAAT TCGTGAAGAA ATTTTGGCTG ATTTCTATAA CAAGTGGCAA 541 GATGATTACT TGGTTGTGAA CAAGTGGCTT GCTCTTCAAG CTATGTCAGA CATGCCT Predicted gene structure (within gDNA segment 93397 to 91064): Exon 1 92793 92783 ( 11 n); cDNA 1 11 ( 11 n); score: 1.000 Intron 1 92782 92697 ( 86 n); Pd: 0.997 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 92696 92558 ( 139 n); cDNA 12 150 ( 139 n); score: 1.000 Intron 2 92557 92467 ( 91 n); Pd: 0.992 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 92466 92320 ( 147 n); cDNA 151 297 ( 147 n); score: 1.000 Intron 3 92319 92230 ( 90 n); Pd: 0.997 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 92229 92148 ( 82 n); cDNA 298 379 ( 82 n); score: 1.000 Intron 4 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 5 92064 91892 ( 173 n); cDNA 380 552 ( 173 n); score: 0.994 Intron 5 91891 91719 ( 173 n); Pd: 0.891 (s: 0.98), Pa: 0.993 (s: 1.00) Exon 6 91718 91674 ( 45 n); cDNA 553 597 ( 45 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E246874+ 0.998 597 1.000 C PGS_C08SLe0084H03.1-_SGN-E246874+ (92793 92783,92696 92558,92466 92320,92229 92148,92064 91892,91718 91674) Alignment (genomic DNA sequence = upper lines): GAGTTTAACC GGTGCGTATT TTTTAAGTCT CTTGTTCAAT ACATTTTAGC TGATCACAAA 92734 |||||||||| | GAGTTTAACC G......... .......... .......... .......... .......... 11 TTTGAATAGT CAAAGATTAA TATGATCTGT CTCTTAGGTG GGAGGCGGGA CAAGTGTTGG 92674 ||| |||||||||| |||||||||| .......... .......... .......... .......GTG GGAGGCGGGA CAAGTGTTGG 34 CAAGGAAGTT GATGCTCAGT CTGGTAGCTG ATTTCCAACA GAATAAGGCT TTGGTTCTTA 92614 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAAGTT GATGCTCAGT CTGGTAGCTG ATTTCCAACA GAATAAGGCT TTGGTTCTTA 94 ACCCTCAGTT TTTGCAGGGG ATCAAAAGCA TACTCACCGA CTCAAGCTTG GATAAGGTGC 92554 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACCCTCAGTT TTTGCAGGGG ATCAAAAGCA TACTCACCGA CTCAAGCTTG GATAAG.... 150 GTGCCCACCT CTTTTCTTGT AGATGTTAGT GTTTCATGTC GGTAGAAAAA TGTTTCGCTA 92494 .......... .......... .......... .......... .......... .......... 150 ATTACTTGTG TATGTGTATC CTTTCAGGAA TTCATTGCAA AGGCAATAAC TTTGCCTGGT 92434 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GAA TTCATTGCAA AGGCAATAAC TTTGCCTGGT 183 ATAGGAGAAA TCATGGACAT GATGACGGTT GCTGATCCAG ATGCCGTTCA TGCAGTGCGG 92374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGAGAAA TCATGGACAT GATGACGGTT GCTGATCCAG ATGCCGTTCA TGCAGTGCGG 243 ACTTTCATCA GGAAGCAACT GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACTGTAATC 92314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTTTCATCA GGAAGCAACT GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACT...... 297 ATCTCTCAAA CTCTCAATTT TTATTTTTCT CAATTAACTT GAAAACGTTC TTAATGAAAA 92254 .......... .......... .......... .......... .......... .......... 297 TAAACCTTGA AATACACTTT GCAGGCTAAA AACAACAGGA GCTCTGGTGC TTATGAGTTT 92194 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GCTAAA AACAACAGGA GCTCTGGTGC TTATGAGTTT 333 GATCATAACA ATATGGCACG TCGTGCTCTT AAAAATATTG CTCTTGGTCT GTTTGTCTTC 92134 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GATCATAACA ATATGGCACG TCGTGCTCTT AAAAATATTG CTCTTG.... .......... 379 TCATCTTTCT CAATAGAGTA TTTTTAGAAT TTGACAAATT ACAATTCCAC TGACCTATTT 92074 .......... .......... .......... .......... .......... .......... 379 TGTCTACAGC TTATCTTGGA TCACTTGAAA ACCCAGAAAT CACAGAACTT CTATTGAATG 92014 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C TTATCTTGGA TCACTTGAAA ACCCAGAAAT CACAGAACTT CTATTGAATG 430 AATACAGAAA CGCCACAAAC ATGACAGATC AGTTTGCAGC TTTAGTGGCT ATCGATCAGC 91954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACAGAAA CGCCACAAAC ATGACAGATC AGTTTGCAGC TTTAGTGGCT ATCGATCAGC 490 AACCTGCAAT TCGTGAAGAA ATTTTGGCTG ATTTCTATAA CAAGTGGCAG GATGATTACT 91894 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AACCTGCAAT TCGTGAAGAA ATTTTGGCTG ATTTCTATAA CAAGTGGCAA GATGATTACT 550 TGGTACATCT CTATGCCTCT AATACCTGAC TGTCATCTTT GACCGTAATT CTTGTCTACC 91834 || TG........ .......... .......... .......... .......... .......... 552 GGATCTGTTC TTGCCTTCAA ATTGTTGAGT AAAACCTGCA TGACGTCGAA TCATTCATAA 91774 .......... .......... .......... .......... .......... .......... 552 CTCAGAGGGA AACTAAAAAA TCTAAAAATT CTTATCTCAC TATATTTTTC CGTAGGTTGT 91714 ||||| .......... .......... .......... .......... .......... .....GTTGT 557 GAACAAGTGG CTTGCTCTTC AAGCTATGTC AGACATGCCT 91674 |||||||||| |||||||||| |||||||||| |||||||||| GAACAAGTGG CTTGCTCTTC AAGCTATGTC AGACATGCCT 597 hqPGS_C08SLe0084H03.1-_SGN-E246874+ (92793 92783,92696 92558,92466 92320,92229 92148,92064 91892,91718 91674) ******************************************************************************** EST sequence 232 +strand 719 n (File: SGN-E333427+) 1 AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAGAAGG 61 AGGAGGAATT TGTGTTCAAT GACGTATCTG AGAGGCCAAC ACCATCGATA TTGCGAGGAT 121 TCAGTGCTCC CATCAGGCTT GAGTCTGATC TCACTGATAG TGATCTTCTT TTCCTTCTTG 181 CTCATGATTC TGATGAGTTT AACCGGTGGG AGGCGGGACA AGTGTTGGCA AGGAAGTTGA 241 TGCTCAGTCT GGTAGCTGAT TTCCAACAGA ATAAGGCTTT GGTTCTTAAC CCTCAGTTTT 301 TGCAGGGGAT CAAAAGCATA CTCACCGACT CAAGCTTGGA TAAGGAATTC ATTGCAAAGG 361 CAATAACTTT GCCTGGTATA GGAGAAATCA TGGACATGAT GACGGTTGCT GATCCAGATG 421 CCGTTCATGC AGTGCGGACT TTCATCAGGA AGCAACTGGC TTCTGAATTG AAACAAGAGT 481 TCCTTATCAC TGCTAAAAAC AACAGGAGCT CTGGTGCTTA TGAGTTTGAT CATAACAATA 541 TGGCACGTCG TGCTCTTAAA AATATTGCTC TTGCTTATCT TGGATCACTT GAAAACCCAG 601 AAATCACAGA ACTTCTATTG AATGAATACA GAAACGCCAC AAACATGACA GATCAGTTTG 661 CAGCTTTAGT GGCTATCGAT CAGCACCNNT GCATTCGTGA AGAAATTTTG GCTGATTTC Predicted gene structure (within gDNA segment 93756 to 91309): Exon 1 93156 93101 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 93100 92932 ( 169 n); Pd: 0.862 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 92931 92783 ( 149 n); cDNA 57 205 ( 149 n); score: 1.000 Intron 2 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 92696 92558 ( 139 n); cDNA 206 344 ( 139 n); score: 1.000 Intron 3 92557 92467 ( 91 n); Pd: 0.992 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 92466 92320 ( 147 n); cDNA 345 491 ( 147 n); score: 1.000 Intron 4 92319 92230 ( 90 n); Pd: 0.997 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 92229 92148 ( 82 n); cDNA 492 573 ( 82 n); score: 1.000 Intron 5 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 1.00) Exon 6 92064 91919 ( 146 n); cDNA 574 719 ( 146 n); score: 0.959 MATCH C08SLe0084H03.1- SGN-E333427+ 0.992 719 1.000 C PGS_C08SLe0084H03.1-_SGN-E333427+ (93156 93101,92931 92783,92696 92558,92466 92320,92229 92148,92064 91919) Alignment (genomic DNA sequence = upper lines): AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAGGTTA 93097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAG.... 56 GCCTTGAAGT TTTGATGGAC TGGTGTAGTC AATTCCACTT AATTTAACTC TATATATGCA 93037 .......... .......... .......... .......... .......... .......... 56 GAGCACAATG ATAACTTTGA TCAAATATAT ATGCTTATCC GGCATTTTGT TCCTCCTATG 92977 .......... .......... .......... .......... .......... .......... 56 ACGTAATAAG GATGTAATAA AGGACTTTTT TCTTGTACTG TGCAGAAGGA GGAGGAATTT 92917 ||||| |||||||||| .......... .......... .......... .......... .....AAGGA GGAGGAATTT 71 GTGTTCAATG ACGTATCTGA GAGGCCAACA CCATCGATAT TGCGAGGATT CAGTGCTCCC 92857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTCAATG ACGTATCTGA GAGGCCAACA CCATCGATAT TGCGAGGATT CAGTGCTCCC 131 ATCAGGCTTG AGTCTGATCT CACTGATAGT GATCTTCTTT TCCTTCTTGC TCATGATTCT 92797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGCTTG AGTCTGATCT CACTGATAGT GATCTTCTTT TCCTTCTTGC TCATGATTCT 191 GATGAGTTTA ACCGGTGCGT ATTTTTTAAG TCTCTTGTTC AATACATTTT AGCTGATCAC 92737 |||||||||| |||| GATGAGTTTA ACCG...... .......... .......... .......... .......... 205 AAATTTGAAT AGTCAAAGAT TAATATGATC TGTCTCTTAG GTGGGAGGCG GGACAAGTGT 92677 |||||||||| |||||||||| .......... .......... .......... .......... GTGGGAGGCG GGACAAGTGT 225 TGGCAAGGAA GTTGATGCTC AGTCTGGTAG CTGATTTCCA ACAGAATAAG GCTTTGGTTC 92617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAAGGAA GTTGATGCTC AGTCTGGTAG CTGATTTCCA ACAGAATAAG GCTTTGGTTC 285 TTAACCCTCA GTTTTTGCAG GGGATCAAAA GCATACTCAC CGACTCAAGC TTGGATAAGG 92557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTAACCCTCA GTTTTTGCAG GGGATCAAAA GCATACTCAC CGACTCAAGC TTGGATAAG. 344 TGCGTGCCCA CCTCTTTTCT TGTAGATGTT AGTGTTTCAT GTCGGTAGAA AAATGTTTCG 92497 .......... .......... .......... .......... .......... .......... 344 CTAATTACTT GTGTATGTGT ATCCTTTCAG GAATTCATTG CAAAGGCAAT AACTTTGCCT 92437 |||||||||| |||||||||| |||||||||| .......... .......... .......... GAATTCATTG CAAAGGCAAT AACTTTGCCT 374 GGTATAGGAG AAATCATGGA CATGATGACG GTTGCTGATC CAGATGCCGT TCATGCAGTG 92377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATAGGAG AAATCATGGA CATGATGACG GTTGCTGATC CAGATGCCGT TCATGCAGTG 434 CGGACTTTCA TCAGGAAGCA ACTGGCTTCT GAATTGAAAC AAGAGTTCCT TATCACTGTA 92317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGGACTTTCA TCAGGAAGCA ACTGGCTTCT GAATTGAAAC AAGAGTTCCT TATCACT... 491 ATCATCTCTC AAACTCTCAA TTTTTATTTT TCTCAATTAA CTTGAAAACG TTCTTAATGA 92257 .......... .......... .......... .......... .......... .......... 491 AAATAAACCT TGAAATACAC TTTGCAGGCT AAAAACAACA GGAGCTCTGG TGCTTATGAG 92197 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GCT AAAAACAACA GGAGCTCTGG TGCTTATGAG 524 TTTGATCATA ACAATATGGC ACGTCGTGCT CTTAAAAATA TTGCTCTTGG TCTGTTTGTC 92137 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTGATCATA ACAATATGGC ACGTCGTGCT CTTAAAAATA TTGCTCTTG. .......... 573 TTCTCATCTT TCTCAATAGA GTATTTTTAG AATTTGACAA ATTACAATTC CACTGACCTA 92077 .......... .......... .......... .......... .......... .......... 573 TTTTGTCTAC AGCTTATCTT GGATCACTTG AAAACCCAGA AATCACAGAA CTTCTATTGA 92017 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CTTATCTT GGATCACTTG AAAACCCAGA AATCACAGAA CTTCTATTGA 621 ATGAATACAG AAACGCCACA AACATGACAG ATCAGTTTGC AGCTTTAGTG GCTATCGATC 91957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAATACAG AAACGCCACA AACATGACAG ATCAGTTTGC AGCTTTAGTG GCTATCGATC 681 AGCAACCTGC AATTCGTGAA GAAATTTTGG CTGATTTC 91919 |||| | ||||||||| |||||||||| |||||||| AGCACCNNTG CATTCGTGAA GAAATTTTGG CTGATTTC 719 hqPGS_C08SLe0084H03.1-_SGN-E333427+ (93156 93101,92931 92783,92696 92558,92466 92320,92229 92148,92064 91919) ******************************************************************************** EST sequence 162 +strand 336 n (File: SGN-E337485+) 1 GAATTCATTG CAAAGGCAAT AACTTTGCCT GGTATAGGAG AAATCATGGA CATGATGACG 61 GTTGCTGATC CAGATGCCGT TCATGCAGTG CGGACTTTCA TCAGGAAGCA ACTGGCTTCT 121 GAATTGAAAC AAGAGTTCCT TATCACTGCT AAAAACAACA GGAGCTCTGG TGCTTATGAG 181 TTTGATCATA ACAATATGGC ACGTCGTGCT CTTAAAAATA TTGCTCTTGC TTATCTTGGA 241 TCACTTGAAA ACCCAGAAAT CACAGAACTT CTTTTGAATG AATACAGAAA CGCCACAAAC 301 ATGACAGATC AGTTTGCAGC TTTAGTGGCT ATCGAT Predicted gene structure (within gDNA segment 93066 to 91348): Exon 1 92466 92320 ( 147 n); cDNA 1 147 ( 147 n); score: 1.000 Intron 1 92319 92230 ( 90 n); Pd: 0.997 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 92229 92148 ( 82 n); cDNA 148 229 ( 82 n); score: 1.000 Intron 2 92147 92065 ( 83 n); Pd: 0.993 (s: 1.00), Pa: 0.957 (s: 0.98) Exon 3 92064 91958 ( 107 n); cDNA 230 336 ( 107 n); score: 0.991 MATCH C08SLe0084H03.1- SGN-E337485+ 0.997 336 1.000 C PGS_C08SLe0084H03.1-_SGN-E337485+ (92466 92320,92229 92148,92064 91958) Alignment (genomic DNA sequence = upper lines): GAATTCATTG CAAAGGCAAT AACTTTGCCT GGTATAGGAG AAATCATGGA CATGATGACG 92407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTCATTG CAAAGGCAAT AACTTTGCCT GGTATAGGAG AAATCATGGA CATGATGACG 60 GTTGCTGATC CAGATGCCGT TCATGCAGTG CGGACTTTCA TCAGGAAGCA ACTGGCTTCT 92347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTGATC CAGATGCCGT TCATGCAGTG CGGACTTTCA TCAGGAAGCA ACTGGCTTCT 120 GAATTGAAAC AAGAGTTCCT TATCACTGTA ATCATCTCTC AAACTCTCAA TTTTTATTTT 92287 |||||||||| |||||||||| ||||||| GAATTGAAAC AAGAGTTCCT TATCACT... .......... .......... .......... 147 TCTCAATTAA CTTGAAAACG TTCTTAATGA AAATAAACCT TGAAATACAC TTTGCAGGCT 92227 ||| .......... .......... .......... .......... .......... .......GCT 150 AAAAACAACA GGAGCTCTGG TGCTTATGAG TTTGATCATA ACAATATGGC ACGTCGTGCT 92167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACAACA GGAGCTCTGG TGCTTATGAG TTTGATCATA ACAATATGGC ACGTCGTGCT 210 CTTAAAAATA TTGCTCTTGG TCTGTTTGTC TTCTCATCTT TCTCAATAGA GTATTTTTAG 92107 |||||||||| ||||||||| CTTAAAAATA TTGCTCTTG. .......... .......... .......... .......... 229 AATTTGACAA ATTACAATTC CACTGACCTA TTTTGTCTAC AGCTTATCTT GGATCACTTG 92047 |||||||| |||||||||| .......... .......... .......... .......... ..CTTATCTT GGATCACTTG 247 AAAACCCAGA AATCACAGAA CTTCTATTGA ATGAATACAG AAACGCCACA AACATGACAG 91987 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AAAACCCAGA AATCACAGAA CTTCTTTTGA ATGAATACAG AAACGCCACA AACATGACAG 307 ATCAGTTTGC AGCTTTAGTG GCTATCGAT 91958 |||||||||| |||||||||| ||||||||| ATCAGTTTGC AGCTTTAGTG GCTATCGAT 336 hqPGS_C08SLe0084H03.1-_SGN-E337485+ (92466 92320,92229 92148,92064 91958) ******************************************************************************** EST sequence 226 +strand 517 n (File: SGN-E267027+) 1 AACGTATACA CCACAGTTCT CCGGGTAACG AAGAAGGAGG AGGAATTTGT GTTCAATGAC 61 GTATCTGAGA GGCCAACACC ATCGATATTG CGAGGATTCA GTGCTCCCAT CAGGCTTGAG 121 TCTGATCTCA CTGATAGTGA TCTTCTTTTC CTTCTTGCTC ATGATTCTGA TGAGTTTAAC 181 CGGTGGGAGG CGGGACAAGT GTTGGCAAGG AAGTTGATGC TCAGTCTGGT AGCTGATTTC 241 CAACAGAATA AGGCTTTGGT TCTTAACCCT CAGTTTTTGC AGGGGATCAA AAGCATACTC 301 ACCGACTCAA GCTTGGATAA GGAATTCATT GCAAAGGCAA TAACTTTGCC TGGTATAGGA 361 GAAATCATGG ACATGATGAC GGTTGCTGAT CCAGATGCCG TTCATGCAGT GCGGACTTTC 421 ATCANGAAGC AACTGGCTTC TGAATTGAAA CAAGAGTTCC TTATCACTGC TAAAAACAAC 481 AGGAGCTCTG GTGCTTATGA GTTTGATCAT AACAATA Predicted gene structure (within gDNA segment 93843 to 91571): Exon 1 93133 93101 ( 33 n); cDNA 1 33 ( 33 n); score: 0.970 Intron 1 93100 92932 ( 169 n); Pd: 0.862 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 92931 92783 ( 149 n); cDNA 34 182 ( 149 n); score: 1.000 Intron 2 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 92696 92558 ( 139 n); cDNA 183 321 ( 139 n); score: 1.000 Intron 3 92557 92467 ( 91 n); Pd: 0.992 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 92466 92320 ( 147 n); cDNA 322 468 ( 147 n); score: 0.993 Intron 4 92319 92230 ( 90 n); Pd: 0.997 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 5 92229 92181 ( 49 n); cDNA 469 517 ( 49 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E267027+ 0.998 517 1.000 C PGS_C08SLe0084H03.1-_SGN-E267027+ (93133 93101,92931 92783,92696 92558,92466 92320,92229 92181) Alignment (genomic DNA sequence = upper lines): AACGTATACA CCACAGTTCT CCGCGTAACG AAGGTTAGCC TTGAAGTTTT GATGGACTGG 93074 |||||||||| |||||||||| ||| |||||| ||| AACGTATACA CCACAGTTCT CCGGGTAACG AAG....... .......... .......... 33 TGTAGTCAAT TCCACTTAAT TTAACTCTAT ATATGCAGAG CACAATGATA ACTTTGATCA 93014 .......... .......... .......... .......... .......... .......... 33 AATATATATG CTTATCCGGC ATTTTGTTCC TCCTATGACG TAATAAGGAT GTAATAAAGG 92954 .......... .......... .......... .......... .......... .......... 33 ACTTTTTTCT TGTACTGTGC AGAAGGAGGA GGAATTTGTG TTCAATGACG TATCTGAGAG 92894 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..AAGGAGGA GGAATTTGTG TTCAATGACG TATCTGAGAG 71 GCCAACACCA TCGATATTGC GAGGATTCAG TGCTCCCATC AGGCTTGAGT CTGATCTCAC 92834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAACACCA TCGATATTGC GAGGATTCAG TGCTCCCATC AGGCTTGAGT CTGATCTCAC 131 TGATAGTGAT CTTCTTTTCC TTCTTGCTCA TGATTCTGAT GAGTTTAACC GGTGCGTATT 92774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGATAGTGAT CTTCTTTTCC TTCTTGCTCA TGATTCTGAT GAGTTTAACC G......... 182 TTTTAAGTCT CTTGTTCAAT ACATTTTAGC TGATCACAAA TTTGAATAGT CAAAGATTAA 92714 .......... .......... .......... .......... .......... .......... 182 TATGATCTGT CTCTTAGGTG GGAGGCGGGA CAAGTGTTGG CAAGGAAGTT GATGCTCAGT 92654 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GTG GGAGGCGGGA CAAGTGTTGG CAAGGAAGTT GATGCTCAGT 225 CTGGTAGCTG ATTTCCAACA GAATAAGGCT TTGGTTCTTA ACCCTCAGTT TTTGCAGGGG 92594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTAGCTG ATTTCCAACA GAATAAGGCT TTGGTTCTTA ACCCTCAGTT TTTGCAGGGG 285 ATCAAAAGCA TACTCACCGA CTCAAGCTTG GATAAGGTGC GTGCCCACCT CTTTTCTTGT 92534 |||||||||| |||||||||| |||||||||| |||||| ATCAAAAGCA TACTCACCGA CTCAAGCTTG GATAAG.... .......... .......... 321 AGATGTTAGT GTTTCATGTC GGTAGAAAAA TGTTTCGCTA ATTACTTGTG TATGTGTATC 92474 .......... .......... .......... .......... .......... .......... 321 CTTTCAGGAA TTCATTGCAA AGGCAATAAC TTTGCCTGGT ATAGGAGAAA TCATGGACAT 92414 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAA TTCATTGCAA AGGCAATAAC TTTGCCTGGT ATAGGAGAAA TCATGGACAT 374 GATGACGGTT GCTGATCCAG ATGCCGTTCA TGCAGTGCGG ACTTTCATCA GGAAGCAACT 92354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GATGACGGTT GCTGATCCAG ATGCCGTTCA TGCAGTGCGG ACTTTCATCA NGAAGCAACT 434 GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACTGTAATC ATCTCTCAAA CTCTCAATTT 92294 |||||||||| |||||||||| |||||||||| |||| GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACT...... .......... .......... 468 TTATTTTTCT CAATTAACTT GAAAACGTTC TTAATGAAAA TAAACCTTGA AATACACTTT 92234 .......... .......... .......... .......... .......... .......... 468 GCAGGCTAAA AACAACAGGA GCTCTGGTGC TTATGAGTTT GATCATAACA ATA 92181 |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ....GCTAAA AACAACAGGA GCTCTGGTGC TTATGAGTTT GATCATAACA ATA 517 hqPGS_C08SLe0084H03.1-_SGN-E267027+ (93133 93101,92931 92783,92696 92558,92466 92320,92229 92181) ******************************************************************************** EST sequence 180 +strand 469 n (File: SGN-E253146+) 1 AAGAAGGAGG AGGAATTCGT GTTCAATGAC GTATCTGAGA GGCCAACACC ATCGATATTG 61 CGAGGATTCA GTGCTCCCAT CATGCTTGAG TCTGATCTCA CTGATAGTGA TCTTCTTTTC 121 CTTCTTGCTC ATGATTCTGA TGAGTTTAAC CGGTGGGAGG CGGGACAAGT GTTGGCACTG 181 AAGATGATGC TCAGTCTGGT AGCTGATTTT CAACAGAATA AAGCTTTGGT TCTTAACCCT 241 CAGTGTTTGC AGGGGATCAA AAGCATACTC ACCGACTCAA GCTTGGATAA AGAATTCATT 301 GCAAAGGCAA TAACTTTGCC TGGTATAGGA GAAATCATGG ACATGATGAC GGCTGCTGAT 361 CCAGATGCCG TTCATGCAGT GCGGACTTTC ATCATGAAGC AACTGGCTTC TGAATTGAGA 421 CAAGAGTTCC TTATCACTGC TTAAAACAAC AAGAGCTCTG GTGCTTATG Predicted gene structure (within gDNA segment 93543 to 91409): Exon 1 92931 92783 ( 149 n); cDNA 4 152 ( 149 n); score: 0.987 Intron 1 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 0.94) Exon 2 92696 92558 ( 139 n); cDNA 153 291 ( 139 n); score: 0.950 Intron 2 92557 92467 ( 91 n); Pd: 0.992 (s: 0.96), Pa: 0.999 (s: 1.00) Exon 3 92466 92320 ( 147 n); cDNA 292 438 ( 147 n); score: 0.980 Intron 3 92319 92230 ( 90 n); Pd: 0.997 (s: 0.96), Pa: 0.998 (s: 0) Exon 4 92229 92199 ( 31 n); cDNA 439 469 ( 31 n); score: 0.935 MATCH C08SLe0084H03.1- SGN-E253146+ 0.972 466 0.994 C PGS_C08SLe0084H03.1-_SGN-E253146+ (92931 92783,92696 92558,92466 92320,92229 92199) Alignment (genomic DNA sequence = upper lines): AAGGAGGAGG AATTTGTGTT CAATGACGTA TCTGAGAGGC CAACACCATC GATATTGCGA 92872 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAGGAGG AATTCGTGTT CAATGACGTA TCTGAGAGGC CAACACCATC GATATTGCGA 63 GGATTCAGTG CTCCCATCAG GCTTGAGTCT GATCTCACTG ATAGTGATCT TCTTTTCCTT 92812 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCAGTG CTCCCATCAT GCTTGAGTCT GATCTCACTG ATAGTGATCT TCTTTTCCTT 123 CTTGCTCATG ATTCTGATGA GTTTAACCGG TGCGTATTTT TTAAGTCTCT TGTTCAATAC 92752 |||||||||| |||||||||| ||||||||| CTTGCTCATG ATTCTGATGA GTTTAACCG. .......... .......... .......... 152 ATTTTAGCTG ATCACAAATT TGAATAGTCA AAGATTAATA TGATCTGTCT CTTAGGTGGG 92692 ||||| .......... .......... .......... .......... .......... .....GTGGG 157 AGGCGGGACA AGTGTTGGCA AGGAAGTTGA TGCTCAGTCT GGTAGCTGAT TTCCAACAGA 92632 |||||||||| |||||||||| |||| ||| |||||||||| |||||||||| || ||||||| AGGCGGGACA AGTGTTGGCA CTGAAGATGA TGCTCAGTCT GGTAGCTGAT TTTCAACAGA 217 ATAAGGCTTT GGTTCTTAAC CCTCAGTTTT TGCAGGGGAT CAAAAGCATA CTCACCGACT 92572 |||| ||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ATAAAGCTTT GGTTCTTAAC CCTCAGTGTT TGCAGGGGAT CAAAAGCATA CTCACCGACT 277 CAAGCTTGGA TAAGGTGCGT GCCCACCTCT TTTCTTGTAG ATGTTAGTGT TTCATGTCGG 92512 |||||||||| ||| CAAGCTTGGA TAAA...... .......... .......... .......... .......... 291 TAGAAAAATG TTTCGCTAAT TACTTGTGTA TGTGTATCCT TTCAGGAATT CATTGCAAAG 92452 ||||| |||||||||| .......... .......... .......... .......... .....GAATT CATTGCAAAG 306 GCAATAACTT TGCCTGGTAT AGGAGAAATC ATGGACATGA TGACGGTTGC TGATCCAGAT 92392 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GCAATAACTT TGCCTGGTAT AGGAGAAATC ATGGACATGA TGACGGCTGC TGATCCAGAT 366 GCCGTTCATG CAGTGCGGAC TTTCATCAGG AAGCAACTGG CTTCTGAATT GAAACAAGAG 92332 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| || ||||||| GCCGTTCATG CAGTGCGGAC TTTCATCATG AAGCAACTGG CTTCTGAATT GAGACAAGAG 426 TTCCTTATCA CTGTAATCAT CTCTCAAACT CTCAATTTTT ATTTTTCTCA ATTAACTTGA 92272 |||||||||| || TTCCTTATCA CT........ .......... .......... .......... .......... 438 AAACGTTCTT AATGAAAATA AACCTTGAAA TACACTTTGC AGGCTAAAAA CAACAGGAGC 92212 ||| |||| ||||| |||| .......... .......... .......... .......... ..GCTTAAAA CAACAAGAGC 456 TCTGGTGCTT ATG 92199 |||||||||| ||| TCTGGTGCTT ATG 469 hqPGS_C08SLe0084H03.1-_SGN-E253146+ (92931 92783,92696 92558,92466 92320,92229 92199) ******************************************************************************** EST sequence 150 +strand 236 n (File: SGN-E251210+) 1 AGAATAAGGC TTTGGTTCTT AACCCTCAGT TTTTGCAGGG GATCAAAAGC ATACTCACCG 61 ACTCAAGCTT GGATAAGGAA TTCATTGCAA AGGCAATAAC TTTGCCTGGT ATAGGAGAAA 121 TCATGGACAT GATGACGGTT GCTGATCCAG ATGCCGTTCA TGCAGTGCGG ACTTTCATCA 181 GGAAGCAACT GGCTTCTGAA TTGAAACAAG AGTTCCTTAT CACTGCTAAA AACAAC Predicted gene structure (within gDNA segment 93234 to 91599): Exon 1 92634 92558 ( 77 n); cDNA 1 77 ( 77 n); score: 1.000 Intron 1 92557 92467 ( 91 n); Pd: 0.992 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 92466 92320 ( 147 n); cDNA 78 224 ( 147 n); score: 1.000 Intron 2 92319 92230 ( 90 n); Pd: 0.997 (s: 1.00), Pa: 0.998 (s: 0) Exon 3 92229 92218 ( 12 n); cDNA 225 236 ( 12 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E251210+ 1.000 236 1.000 C PGS_C08SLe0084H03.1-_SGN-E251210+ (92634 92558,92466 92320,92229 92218) Alignment (genomic DNA sequence = upper lines): AGAATAAGGC TTTGGTTCTT AACCCTCAGT TTTTGCAGGG GATCAAAAGC ATACTCACCG 92575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATAAGGC TTTGGTTCTT AACCCTCAGT TTTTGCAGGG GATCAAAAGC ATACTCACCG 60 ACTCAAGCTT GGATAAGGTG CGTGCCCACC TCTTTTCTTG TAGATGTTAG TGTTTCATGT 92515 |||||||||| ||||||| ACTCAAGCTT GGATAAG... .......... .......... .......... .......... 77 CGGTAGAAAA ATGTTTCGCT AATTACTTGT GTATGTGTAT CCTTTCAGGA ATTCATTGCA 92455 || |||||||||| .......... .......... .......... .......... ........GA ATTCATTGCA 89 AAGGCAATAA CTTTGCCTGG TATAGGAGAA ATCATGGACA TGATGACGGT TGCTGATCCA 92395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCAATAA CTTTGCCTGG TATAGGAGAA ATCATGGACA TGATGACGGT TGCTGATCCA 149 GATGCCGTTC ATGCAGTGCG GACTTTCATC AGGAAGCAAC TGGCTTCTGA ATTGAAACAA 92335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCCGTTC ATGCAGTGCG GACTTTCATC AGGAAGCAAC TGGCTTCTGA ATTGAAACAA 209 GAGTTCCTTA TCACTGTAAT CATCTCTCAA ACTCTCAATT TTTATTTTTC TCAATTAACT 92275 |||||||||| ||||| GAGTTCCTTA TCACT..... .......... .......... .......... .......... 224 TGAAAACGTT CTTAATGAAA ATAAACCTTG AAATACACTT TGCAGGCTAA AAACAAC 92218 ||||| ||||||| .......... .......... .......... .......... .....GCTAA AAACAAC 236 hqPGS_C08SLe0084H03.1-_SGN-E251210+ (92634 92558,92466 92320,92229 92218) ******************************************************************************** EST sequence 186 +strand 735 n (File: SGN-E264602+) 1 AAAAGCACAG ATTTATATTT TGAGAGGCAT GATGGTCAAG CAGTAACATG TGAAGACTTT 61 TTTGCTGCCA TGCGAGATGC CAACAATGCA GATTTTGCTA ATTTCTTGTT ATGGTACTCG 121 CAAGCTGGGA CACCTGTAGT GAAGGTTACC ACAAATTATA ATGCTGAAGG GCGCACTTTC 181 TCCCTCAAGT TTAGTCAAGA GGTGCCTCCA ACCCCCGGCC AGTCTGCAAA AGAACCTATG 241 TTTATTCCTG TTGCTGTAGG TCTGCTGGAT TCAAGTGGTA AGGACATGCC TCTATCTTCG 301 GTTCATCATG ATGGGAAATT GGAGAGTTTT GCGAGCAGTG GTCAAAACGT ATACACCACA 361 GTTCTCCGCG TAACGAAGAA GGAGGAGGAA TTTGTGTTCA ATGACGTATC TGAGAGGCCA 421 ACACCATCGA TATTGCGAGG ATTCAGTGCT CCCATCAGGC TTGAGTCTGA TCTCACTGAT 481 AGTGATCTTC TTTTCCTTCT TGCTCATGAT TCTGATGAGT TTAACCGGTG GGAGGCGGGA 541 CAAGTGTTGG CAAGGAAGTT GATGCTCAGT CTGGTAGCTG ATTTCCAACA GAATAAGGCT 601 TTGGTTCTTA ACCCTCAGTT TTTGCAGGGG ATCAAAAGCA TACTCACCGA CTCAAGCTTG 661 GATAAGGAAT TCATTGCAAA GGCAATAACT TTGCCTGGTA TAGGAGAAAT CATGGACATG 721 ATGACNGTTG CTGAT Predicted gene structure (within gDNA segment 94276 to 91698): Exon 1 93636 93528 ( 109 n); cDNA 5 113 ( 109 n); score: 1.000 Intron 1 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 2 93444 93364 ( 81 n); cDNA 114 194 ( 81 n); score: 1.000 Intron 2 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 3 93284 93101 ( 184 n); cDNA 195 378 ( 184 n); score: 1.000 Intron 3 93100 92932 ( 169 n); Pd: 0.862 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 92931 92783 ( 149 n); cDNA 379 527 ( 149 n); score: 1.000 Intron 4 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 92696 92558 ( 139 n); cDNA 528 666 ( 139 n); score: 1.000 Intron 5 92557 92467 ( 91 n); Pd: 0.992 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 92466 92398 ( 69 n); cDNA 667 735 ( 69 n); score: 0.986 MATCH C08SLe0084H03.1- SGN-E264602+ 0.999 731 0.995 C PGS_C08SLe0084H03.1-_SGN-E264602+ (93636 93528,93444 93364,93284 93101,92931 92783,92696 92558,92466 92398) Alignment (genomic DNA sequence = upper lines): GCACAGATTT ATATTTTGAG AGGCATGATG GTCAAGCAGT AACATGTGAA GACTTTTTTG 93577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAGATTT ATATTTTGAG AGGCATGATG GTCAAGCAGT AACATGTGAA GACTTTTTTG 64 CTGCCATGCG AGATGCCAAC AATGCAGATT TTGCTAATTT CTTGTTATGG TAGGCGACTC 93517 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGCCATGCG AGATGCCAAC AATGCAGATT TTGCTAATTT CTTGTTATG. .......... 113 TTCCTTCCCG CCAGTCGAAC CAGTTTTCGT GATTCCCTTC AAAGTTAAGC TTTTAATGAA 93457 .......... .......... .......... .......... .......... .......... 113 ACATAATTGC AGGTACTCGC AAGCTGGGAC ACCTGTAGTG AAGGTTACCA CAAATTATAA 93397 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTACTCGC AAGCTGGGAC ACCTGTAGTG AAGGTTACCA CAAATTATAA 161 TGCTGAAGGG CGCACTTTCT CCCTCAAGTT TAGGTAATAA ACATTAAATG GATTTTTGTT 93337 |||||||||| |||||||||| |||||||||| ||| TGCTGAAGGG CGCACTTTCT CCCTCAAGTT TAG....... .......... .......... 194 TGGACTAACC TATATGGTTT AGCCTAACCT ATTTCATCTA ATGTTTTCCC AGTCAAGAGG 93277 |||||||| .......... .......... .......... .......... .......... ..TCAAGAGG 202 TGCCTCCAAC CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC 93217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCCAAC CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC 262 TGCTGGATTC AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG 93157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGGATTC AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG 322 AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAGGTTA 93097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAG.... 378 GCCTTGAAGT TTTGATGGAC TGGTGTAGTC AATTCCACTT AATTTAACTC TATATATGCA 93037 .......... .......... .......... .......... .......... .......... 378 GAGCACAATG ATAACTTTGA TCAAATATAT ATGCTTATCC GGCATTTTGT TCCTCCTATG 92977 .......... .......... .......... .......... .......... .......... 378 ACGTAATAAG GATGTAATAA AGGACTTTTT TCTTGTACTG TGCAGAAGGA GGAGGAATTT 92917 ||||| |||||||||| .......... .......... .......... .......... .....AAGGA GGAGGAATTT 393 GTGTTCAATG ACGTATCTGA GAGGCCAACA CCATCGATAT TGCGAGGATT CAGTGCTCCC 92857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTCAATG ACGTATCTGA GAGGCCAACA CCATCGATAT TGCGAGGATT CAGTGCTCCC 453 ATCAGGCTTG AGTCTGATCT CACTGATAGT GATCTTCTTT TCCTTCTTGC TCATGATTCT 92797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGCTTG AGTCTGATCT CACTGATAGT GATCTTCTTT TCCTTCTTGC TCATGATTCT 513 GATGAGTTTA ACCGGTGCGT ATTTTTTAAG TCTCTTGTTC AATACATTTT AGCTGATCAC 92737 |||||||||| |||| GATGAGTTTA ACCG...... .......... .......... .......... .......... 527 AAATTTGAAT AGTCAAAGAT TAATATGATC TGTCTCTTAG GTGGGAGGCG GGACAAGTGT 92677 |||||||||| |||||||||| .......... .......... .......... .......... GTGGGAGGCG GGACAAGTGT 547 TGGCAAGGAA GTTGATGCTC AGTCTGGTAG CTGATTTCCA ACAGAATAAG GCTTTGGTTC 92617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAAGGAA GTTGATGCTC AGTCTGGTAG CTGATTTCCA ACAGAATAAG GCTTTGGTTC 607 TTAACCCTCA GTTTTTGCAG GGGATCAAAA GCATACTCAC CGACTCAAGC TTGGATAAGG 92557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTAACCCTCA GTTTTTGCAG GGGATCAAAA GCATACTCAC CGACTCAAGC TTGGATAAG. 666 TGCGTGCCCA CCTCTTTTCT TGTAGATGTT AGTGTTTCAT GTCGGTAGAA AAATGTTTCG 92497 .......... .......... .......... .......... .......... .......... 666 CTAATTACTT GTGTATGTGT ATCCTTTCAG GAATTCATTG CAAAGGCAAT AACTTTGCCT 92437 |||||||||| |||||||||| |||||||||| .......... .......... .......... GAATTCATTG CAAAGGCAAT AACTTTGCCT 696 GGTATAGGAG AAATCATGGA CATGATGACG GTTGCTGAT 92398 |||||||||| |||||||||| ||||||||| ||||||||| GGTATAGGAG AAATCATGGA CATGATGACN GTTGCTGAT 735 hqPGS_C08SLe0084H03.1-_SGN-E264602+ (93636 93528,93444 93364,93284 93101,92931 92783,92696 92558,92466 92398) ******************************************************************************** EST sequence 148 +strand 474 n (File: SGN-E330552+) 1 TTGCTGTAGG TCTGCTGGAT TCAAGTGGTA AGGACATGCC TCTATCTTCG GTTCATCATG 61 ATGGGAAATT GGAGAGTTTT GCGAGCAGTG GTCAAAACGT ATACACCACA GTTCTCCGCG 121 TAACGAAGAA GGAGGAGGAA TTTGTGTTCA ATGACGTATC TGAGAGGCCA ACACCATCGA 181 TATTGCGAGG ATTCAGTGCT CCCATCAGGC TTGAGTCTGA TCTCACTGAT AGTGATCTTC 241 TTTTCCTTCT TGCTCATGAT TCTGATGAGT TTAACCGGTG GGAGGCGGGA CAAGTGTTGG 301 CAAGGAAGTT GATGCTCAGT CTGGTAGCTG ATTTCCAACA GAATAAGGCT TTGGTTCTTA 361 ACCCTCAGTT TTTGCAGGGG ATCAAAAGCA TACTCACCGA CTCAAGCTTG GATAAGGAAT 421 TCATTGCAAA GGCAATAACT TTGCCTGGTA TAGGAGAAAT CATGGACATG ATGA Predicted gene structure (within gDNA segment 93828 to 91799): Exon 1 93228 93101 ( 128 n); cDNA 1 128 ( 128 n); score: 1.000 Intron 1 93100 92932 ( 169 n); Pd: 0.862 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 92931 92783 ( 149 n); cDNA 129 277 ( 149 n); score: 1.000 Intron 2 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 92696 92558 ( 139 n); cDNA 278 416 ( 139 n); score: 1.000 Intron 3 92557 92467 ( 91 n); Pd: 0.992 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 92466 92409 ( 58 n); cDNA 417 474 ( 58 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E330552+ 1.000 474 1.000 C PGS_C08SLe0084H03.1-_SGN-E330552+ (93228 93101,92931 92783,92696 92558,92466 92409) Alignment (genomic DNA sequence = upper lines): TTGCTGTAGG TCTGCTGGAT TCAAGTGGTA AGGACATGCC TCTATCTTCG GTTCATCATG 93169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGTAGG TCTGCTGGAT TCAAGTGGTA AGGACATGCC TCTATCTTCG GTTCATCATG 60 ATGGGAAATT GGAGAGTTTT GCGAGCAGTG GTCAAAACGT ATACACCACA GTTCTCCGCG 93109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGAAATT GGAGAGTTTT GCGAGCAGTG GTCAAAACGT ATACACCACA GTTCTCCGCG 120 TAACGAAGGT TAGCCTTGAA GTTTTGATGG ACTGGTGTAG TCAATTCCAC TTAATTTAAC 93049 |||||||| TAACGAAG.. .......... .......... .......... .......... .......... 128 TCTATATATG CAGAGCACAA TGATAACTTT GATCAAATAT ATATGCTTAT CCGGCATTTT 92989 .......... .......... .......... .......... .......... .......... 128 GTTCCTCCTA TGACGTAATA AGGATGTAAT AAAGGACTTT TTTCTTGTAC TGTGCAGAAG 92929 ||| .......... .......... .......... .......... .......... .......AAG 131 GAGGAGGAAT TTGTGTTCAA TGACGTATCT GAGAGGCCAA CACCATCGAT ATTGCGAGGA 92869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGGAAT TTGTGTTCAA TGACGTATCT GAGAGGCCAA CACCATCGAT ATTGCGAGGA 191 TTCAGTGCTC CCATCAGGCT TGAGTCTGAT CTCACTGATA GTGATCTTCT TTTCCTTCTT 92809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGTGCTC CCATCAGGCT TGAGTCTGAT CTCACTGATA GTGATCTTCT TTTCCTTCTT 251 GCTCATGATT CTGATGAGTT TAACCGGTGC GTATTTTTTA AGTCTCTTGT TCAATACATT 92749 |||||||||| |||||||||| |||||| GCTCATGATT CTGATGAGTT TAACCG.... .......... .......... .......... 277 TTAGCTGATC ACAAATTTGA ATAGTCAAAG ATTAATATGA TCTGTCTCTT AGGTGGGAGG 92689 |||||||| .......... .......... .......... .......... .......... ..GTGGGAGG 285 CGGGACAAGT GTTGGCAAGG AAGTTGATGC TCAGTCTGGT AGCTGATTTC CAACAGAATA 92629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGACAAGT GTTGGCAAGG AAGTTGATGC TCAGTCTGGT AGCTGATTTC CAACAGAATA 345 AGGCTTTGGT TCTTAACCCT CAGTTTTTGC AGGGGATCAA AAGCATACTC ACCGACTCAA 92569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTTTGGT TCTTAACCCT CAGTTTTTGC AGGGGATCAA AAGCATACTC ACCGACTCAA 405 GCTTGGATAA GGTGCGTGCC CACCTCTTTT CTTGTAGATG TTAGTGTTTC ATGTCGGTAG 92509 |||||||||| | GCTTGGATAA G......... .......... .......... .......... .......... 416 AAAAATGTTT CGCTAATTAC TTGTGTATGT GTATCCTTTC AGGAATTCAT TGCAAAGGCA 92449 |||||||| |||||||||| .......... .......... .......... .......... ..GAATTCAT TGCAAAGGCA 434 ATAACTTTGC CTGGTATAGG AGAAATCATG GACATGATGA 92409 |||||||||| |||||||||| |||||||||| |||||||||| ATAACTTTGC CTGGTATAGG AGAAATCATG GACATGATGA 474 hqPGS_C08SLe0084H03.1-_SGN-E330552+ (93228 93101,92931 92783,92696 92558,92466 92409) ******************************************************************************** EST sequence 156 +strand 620 n (File: SGN-E304696+) 1 ATGGTCAAGC AGTAACATGT GAAGACTTTT TTGCTGCCAT GCGAGATGCC AACAATGCAG 61 ATTTTGCTAA TTTCTTGTTA TGGTACTCGC AAGCTGGGAC ACCTGTAGTG AAGGTTACCA 121 CAAATTATAA TGCTGAAGGG CGCACTTTCT CCCTCAAGTT TAGTCAAGAG GTGCCTCCAA 181 CCCCCGGCCA GTCTGCAAAA GAACCTATGT TTATTCCTGT TGCTGTAGGT CTGCTGGATT 241 CAAGTGGTAA GGACATGCCT CTATCTTCGG TTCATCATGA TGGGAAATTG GAGAGTTTTG 301 CGAGCAGTGG TCAAAACGTA TACACCACAG TTCTCCGCGT AACGAAGAAG GAGGAGGAAT 361 TTGTGTTCAA TGACGTATCT GAGAGGCCAA CACCATCGAT ATTGCGAGGA TTCAGTGCTC 421 CCATCAGGCT TGAGTCTGAT CTCACTGATA GTGATCTTCT TTTCCTTCTT GCTCATGATT 481 CTGATGAGTT TAACCGGTGG GAGGCGGGAC AAGTGTTGGC AAGGAAGTTG ATGCTCAGTC 541 TGGTAGCTGA TTTCCAACAG AATAAGGCTT TGGTTCTTAA CCCTCAGTTT TTGCAGGGGA 601 TCAAAAGCAT ACTCACCGAC Predicted gene structure (within gDNA segment 94209 to 91963): Exon 1 93609 93528 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 2 93444 93364 ( 81 n); cDNA 83 163 ( 81 n); score: 1.000 Intron 2 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 3 93284 93101 ( 184 n); cDNA 164 347 ( 184 n); score: 1.000 Intron 3 93100 92932 ( 169 n); Pd: 0.862 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 92931 92783 ( 149 n); cDNA 348 496 ( 149 n); score: 1.000 Intron 4 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 92696 92573 ( 124 n); cDNA 497 620 ( 124 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E304696+ 1.000 620 1.000 C PGS_C08SLe0084H03.1-_SGN-E304696+ (93609 93528,93444 93364,93284 93101,92931 92783,92696 92573) Alignment (genomic DNA sequence = upper lines): ATGGTCAAGC AGTAACATGT GAAGACTTTT TTGCTGCCAT GCGAGATGCC AACAATGCAG 93550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCAAGC AGTAACATGT GAAGACTTTT TTGCTGCCAT GCGAGATGCC AACAATGCAG 60 ATTTTGCTAA TTTCTTGTTA TGGTAGGCGA CTCTTCCTTC CCGCCAGTCG AACCAGTTTT 93490 |||||||||| |||||||||| || ATTTTGCTAA TTTCTTGTTA TG........ .......... .......... .......... 82 CGTGATTCCC TTCAAAGTTA AGCTTTTAAT GAAACATAAT TGCAGGTACT CGCAAGCTGG 93430 ||||| |||||||||| .......... .......... .......... .......... .....GTACT CGCAAGCTGG 97 GACACCTGTA GTGAAGGTTA CCACAAATTA TAATGCTGAA GGGCGCACTT TCTCCCTCAA 93370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACCTGTA GTGAAGGTTA CCACAAATTA TAATGCTGAA GGGCGCACTT TCTCCCTCAA 157 GTTTAGGTAA TAAACATTAA ATGGATTTTT GTTTGGACTA ACCTATATGG TTTAGCCTAA 93310 |||||| GTTTAG.... .......... .......... .......... .......... .......... 163 CCTATTTCAT CTAATGTTTT CCCAGTCAAG AGGTGCCTCC AACCCCCGGC CAGTCTGCAA 93250 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....TCAAG AGGTGCCTCC AACCCCCGGC CAGTCTGCAA 198 AAGAACCTAT GTTTATTCCT GTTGCTGTAG GTCTGCTGGA TTCAAGTGGT AAGGACATGC 93190 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACCTAT GTTTATTCCT GTTGCTGTAG GTCTGCTGGA TTCAAGTGGT AAGGACATGC 258 CTCTATCTTC GGTTCATCAT GATGGGAAAT TGGAGAGTTT TGCGAGCAGT GGTCAAAACG 93130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTATCTTC GGTTCATCAT GATGGGAAAT TGGAGAGTTT TGCGAGCAGT GGTCAAAACG 318 TATACACCAC AGTTCTCCGC GTAACGAAGG TTAGCCTTGA AGTTTTGATG GACTGGTGTA 93070 |||||||||| |||||||||| ||||||||| TATACACCAC AGTTCTCCGC GTAACGAAG. .......... .......... .......... 347 GTCAATTCCA CTTAATTTAA CTCTATATAT GCAGAGCACA ATGATAACTT TGATCAAATA 93010 .......... .......... .......... .......... .......... .......... 347 TATATGCTTA TCCGGCATTT TGTTCCTCCT ATGACGTAAT AAGGATGTAA TAAAGGACTT 92950 .......... .......... .......... .......... .......... .......... 347 TTTTCTTGTA CTGTGCAGAA GGAGGAGGAA TTTGTGTTCA ATGACGTATC TGAGAGGCCA 92890 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AA GGAGGAGGAA TTTGTGTTCA ATGACGTATC TGAGAGGCCA 389 ACACCATCGA TATTGCGAGG ATTCAGTGCT CCCATCAGGC TTGAGTCTGA TCTCACTGAT 92830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACCATCGA TATTGCGAGG ATTCAGTGCT CCCATCAGGC TTGAGTCTGA TCTCACTGAT 449 AGTGATCTTC TTTTCCTTCT TGCTCATGAT TCTGATGAGT TTAACCGGTG CGTATTTTTT 92770 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGTGATCTTC TTTTCCTTCT TGCTCATGAT TCTGATGAGT TTAACCG... .......... 496 AAGTCTCTTG TTCAATACAT TTTAGCTGAT CACAAATTTG AATAGTCAAA GATTAATATG 92710 .......... .......... .......... .......... .......... .......... 496 ATCTGTCTCT TAGGTGGGAG GCGGGACAAG TGTTGGCAAG GAAGTTGATG CTCAGTCTGG 92650 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTGGGAG GCGGGACAAG TGTTGGCAAG GAAGTTGATG CTCAGTCTGG 543 TAGCTGATTT CCAACAGAAT AAGGCTTTGG TTCTTAACCC TCAGTTTTTG CAGGGGATCA 92590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGATTT CCAACAGAAT AAGGCTTTGG TTCTTAACCC TCAGTTTTTG CAGGGGATCA 603 AAAGCATACT CACCGAC 92573 |||||||||| ||||||| AAAGCATACT CACCGAC 620 hqPGS_C08SLe0084H03.1-_SGN-E304696+ (93609 93528,93444 93364,93284 93101,92931 92783,92696 92573) ******************************************************************************** EST sequence 155 +strand 616 n (File: SGN-E314800+) 1 AACCTTGTTA GGTAGCCAAG GATTTAGAAA AGGCACAGAT TTATATTTTG AGAGGCATGA 61 TGGTCAAGCA GTAACATGTG AAGACTTTTT TGCTGCCATG CGAGATGCCA ACAATGCAGA 121 TTTTGCTAAT TTCTTGTTAT GGTACTCGCA AGCTGGGACA CCTGTAGTGA AGGTTACCAC 181 AAATTATAAT GCTGAAGGGC GCACTTTCTC CCTCAAGTTT AGTCAAGAGG TGCCTCCAAC 241 CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC TGCTGGATTC 301 AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG AGAGTTTTGC 361 GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAGAAGG AGGAGGAATT 421 TGTGTTCAAT GACGTATCTG AGAGGCCAAC ACCATCGATA TTGCGAGGAT TCAGTGCTCC 481 CATCAGGCTT GAGTCTGATC TCACTGATAG TGATCTTCTT TTCCTTCTTG CTCATGATTC 541 TGATGAGTTT AACCGGTGGG AGGCGGGACA AGTGTTGGCA ANGGAAGTGA TGCTCAGTCT 601 GGTAGCTGAT TTCCAC Predicted gene structure (within gDNA segment 94367 to 92017): Exon 1 93767 93737 ( 31 n); cDNA 1 31 ( 31 n); score: 1.000 Intron 1 93736 93638 ( 99 n); Pd: 0.898 (s: 0), Pa: 0.934 (s: 1.00) Exon 2 93637 93528 ( 110 n); cDNA 32 141 ( 110 n); score: 1.000 Intron 2 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 3 93444 93364 ( 81 n); cDNA 142 222 ( 81 n); score: 1.000 Intron 3 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 4 93284 93101 ( 184 n); cDNA 223 406 ( 184 n); score: 1.000 Intron 4 93100 92932 ( 169 n); Pd: 0.862 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 92931 92783 ( 149 n); cDNA 407 555 ( 149 n); score: 1.000 Intron 5 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 0.92) Exon 6 92696 92637 ( 60 n); cDNA 556 615 ( 60 n); score: 0.933 MATCH C08SLe0084H03.1- SGN-E314800+ 0.993 615 0.998 C PGS_C08SLe0084H03.1-_SGN-E314800+ (93767 93737,93637 93528,93444 93364,93284 93101,92931 92783,92696 92637) Alignment (genomic DNA sequence = upper lines): AACCTTGTTA GGTAGCCAAG GATTTAGAAA AGTAAGAAAA CGATAATCTC TTGCCTATTT 93708 |||||||||| |||||||||| |||||||||| | AACCTTGTTA GGTAGCCAAG GATTTAGAAA A......... .......... .......... 31 TTGTTGTACT GACAAATGAT TTCCGAACTT CGGAGTCTCA AAAATCTGAT ATACCCCCTT 93648 .......... .......... .......... .......... .......... .......... 31 TCCCCTTCAG GGCACAGATT TATATTTTGA GAGGCATGAT GGTCAAGCAG TAACATGTGA 93588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GGCACAGATT TATATTTTGA GAGGCATGAT GGTCAAGCAG TAACATGTGA 81 AGACTTTTTT GCTGCCATGC GAGATGCCAA CAATGCAGAT TTTGCTAATT TCTTGTTATG 93528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTTTTT GCTGCCATGC GAGATGCCAA CAATGCAGAT TTTGCTAATT TCTTGTTATG 141 GTAGGCGACT CTTCCTTCCC GCCAGTCGAA CCAGTTTTCG TGATTCCCTT CAAAGTTAAG 93468 .......... .......... .......... .......... .......... .......... 141 CTTTTAATGA AACATAATTG CAGGTACTCG CAAGCTGGGA CACCTGTAGT GAAGGTTACC 93408 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTACTCG CAAGCTGGGA CACCTGTAGT GAAGGTTACC 178 ACAAATTATA ATGCTGAAGG GCGCACTTTC TCCCTCAAGT TTAGGTAATA AACATTAAAT 93348 |||||||||| |||||||||| |||||||||| |||||||||| |||| ACAAATTATA ATGCTGAAGG GCGCACTTTC TCCCTCAAGT TTAG...... .......... 222 GGATTTTTGT TTGGACTAAC CTATATGGTT TAGCCTAACC TATTTCATCT AATGTTTTCC 93288 .......... .......... .......... .......... .......... .......... 222 CAGTCAAGAG GTGCCTCCAA CCCCCGGCCA GTCTGCAAAA GAACCTATGT TTATTCCTGT 93228 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TCAAGAG GTGCCTCCAA CCCCCGGCCA GTCTGCAAAA GAACCTATGT TTATTCCTGT 279 TGCTGTAGGT CTGCTGGATT CAAGTGGTAA GGACATGCCT CTATCTTCGG TTCATCATGA 93168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGTAGGT CTGCTGGATT CAAGTGGTAA GGACATGCCT CTATCTTCGG TTCATCATGA 339 TGGGAAATTG GAGAGTTTTG CGAGCAGTGG TCAAAACGTA TACACCACAG TTCTCCGCGT 93108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAAATTG GAGAGTTTTG CGAGCAGTGG TCAAAACGTA TACACCACAG TTCTCCGCGT 399 AACGAAGGTT AGCCTTGAAG TTTTGATGGA CTGGTGTAGT CAATTCCACT TAATTTAACT 93048 ||||||| AACGAAG... .......... .......... .......... .......... .......... 406 CTATATATGC AGAGCACAAT GATAACTTTG ATCAAATATA TATGCTTATC CGGCATTTTG 92988 .......... .......... .......... .......... .......... .......... 406 TTCCTCCTAT GACGTAATAA GGATGTAATA AAGGACTTTT TTCTTGTACT GTGCAGAAGG 92928 |||| .......... .......... .......... .......... .......... ......AAGG 410 AGGAGGAATT TGTGTTCAAT GACGTATCTG AGAGGCCAAC ACCATCGATA TTGCGAGGAT 92868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGAATT TGTGTTCAAT GACGTATCTG AGAGGCCAAC ACCATCGATA TTGCGAGGAT 470 TCAGTGCTCC CATCAGGCTT GAGTCTGATC TCACTGATAG TGATCTTCTT TTCCTTCTTG 92808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGCTCC CATCAGGCTT GAGTCTGATC TCACTGATAG TGATCTTCTT TTCCTTCTTG 530 CTCATGATTC TGATGAGTTT AACCGGTGCG TATTTTTTAA GTCTCTTGTT CAATACATTT 92748 |||||||||| |||||||||| ||||| CTCATGATTC TGATGAGTTT AACCG..... .......... .......... .......... 555 TAGCTGATCA CAAATTTGAA TAGTCAAAGA TTAATATGAT CTGTCTCTTA GGTGGGAGGC 92688 ||||||||| .......... .......... .......... .......... .......... .GTGGGAGGC 564 GGGACAAGTG TTGGCAAGGA AGTTGATGCT CAGTCTGGTA GCTGATTTCC A 92637 |||||||||| ||||||| | | ||||||| |||||||||| |||||||||| | GGGACAAGTG TTGGCAANGG AAGTGATGCT CAGTCTGGTA GCTGATTTCC A 615 hqPGS_C08SLe0084H03.1-_SGN-E314800+ (93767 93737,93637 93528,93444 93364,93284 93101,92931 92783,92696 92637) ******************************************************************************** EST sequence 221 +strand 584 n (File: SGN-E256827+) 1 AAAAGGCACA GATTTATATT TTGAGAGGCA TGATGGTCAA GCAGTAACAT GTGAAGACTT 61 TTTTGCTGCC ATGCGAGATG CCAACAATGC AGATTTTGCT AATTTCTTGT TATGGTACTC 121 GCAAGCTGGG ACACCTGTAG TGAAGGTTAC CACAAATTAT AATGCTGAAG GGCGCACTTT 181 CTCCCTCAAG TTTAGTCAAG AGGTGCCTCC AACCCCCGGC CAGTCTGCAA AAGAACCTAT 241 GTTTATTCCT GTTGCTGTAG GTCTGCTGGA TTCAAGTGGT AAGGACATGC CTCTATCTTC 301 GGTTCATCAT GATGGGAAAT TGGAGAGTTT TGCGAGCAGT GGTCAAAACG TATACACCAC 361 AGTTCTCCGC GTAACGAAGA AGGAGGAGGA ATTTGTGTTC AATGACGTAT CTGAGAGGCC 421 AACACCATCG ATATTGCGAG GATTCAGTGC TCCCATCAGG CTTGAGTCTG ATCTCACTGA 481 TAGTGATCTT CTTTTCCTTC TTGCTCATGA TTCTGATGAG TTTAACCGGT GGGAGGCGGG 541 ACAAGTGTTG GCAAGGAAGT TGATGCTCAG TCTGGTAGCT GATT Predicted gene structure (within gDNA segment 94277 to 92031): Exon 1 93637 93528 ( 110 n); cDNA 5 114 ( 110 n); score: 1.000 Intron 1 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 2 93444 93364 ( 81 n); cDNA 115 195 ( 81 n); score: 1.000 Intron 2 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 3 93284 93101 ( 184 n); cDNA 196 379 ( 184 n); score: 1.000 Intron 3 93100 92932 ( 169 n); Pd: 0.862 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 92931 92783 ( 149 n); cDNA 380 528 ( 149 n); score: 1.000 Intron 4 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 92696 92641 ( 56 n); cDNA 529 584 ( 56 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E256827+ 1.000 580 0.993 C PGS_C08SLe0084H03.1-_SGN-E256827+ (93637 93528,93444 93364,93284 93101,92931 92783,92696 92641) Alignment (genomic DNA sequence = upper lines): GGCACAGATT TATATTTTGA GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT 93578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCACAGATT TATATTTTGA GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT 64 GCTGCCATGC GAGATGCCAA CAATGCAGAT TTTGCTAATT TCTTGTTATG GTAGGCGACT 93518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCCATGC GAGATGCCAA CAATGCAGAT TTTGCTAATT TCTTGTTATG .......... 114 CTTCCTTCCC GCCAGTCGAA CCAGTTTTCG TGATTCCCTT CAAAGTTAAG CTTTTAATGA 93458 .......... .......... .......... .......... .......... .......... 114 AACATAATTG CAGGTACTCG CAAGCTGGGA CACCTGTAGT GAAGGTTACC ACAAATTATA 93398 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTACTCG CAAGCTGGGA CACCTGTAGT GAAGGTTACC ACAAATTATA 161 ATGCTGAAGG GCGCACTTTC TCCCTCAAGT TTAGGTAATA AACATTAAAT GGATTTTTGT 93338 |||||||||| |||||||||| |||||||||| |||| ATGCTGAAGG GCGCACTTTC TCCCTCAAGT TTAG...... .......... .......... 195 TTGGACTAAC CTATATGGTT TAGCCTAACC TATTTCATCT AATGTTTTCC CAGTCAAGAG 93278 ||||||| .......... .......... .......... .......... .......... ...TCAAGAG 202 GTGCCTCCAA CCCCCGGCCA GTCTGCAAAA GAACCTATGT TTATTCCTGT TGCTGTAGGT 93218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTCCAA CCCCCGGCCA GTCTGCAAAA GAACCTATGT TTATTCCTGT TGCTGTAGGT 262 CTGCTGGATT CAAGTGGTAA GGACATGCCT CTATCTTCGG TTCATCATGA TGGGAAATTG 93158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGGATT CAAGTGGTAA GGACATGCCT CTATCTTCGG TTCATCATGA TGGGAAATTG 322 GAGAGTTTTG CGAGCAGTGG TCAAAACGTA TACACCACAG TTCTCCGCGT AACGAAGGTT 93098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAGAGTTTTG CGAGCAGTGG TCAAAACGTA TACACCACAG TTCTCCGCGT AACGAAG... 379 AGCCTTGAAG TTTTGATGGA CTGGTGTAGT CAATTCCACT TAATTTAACT CTATATATGC 93038 .......... .......... .......... .......... .......... .......... 379 AGAGCACAAT GATAACTTTG ATCAAATATA TATGCTTATC CGGCATTTTG TTCCTCCTAT 92978 .......... .......... .......... .......... .......... .......... 379 GACGTAATAA GGATGTAATA AAGGACTTTT TTCTTGTACT GTGCAGAAGG AGGAGGAATT 92918 |||| |||||||||| .......... .......... .......... .......... ......AAGG AGGAGGAATT 393 TGTGTTCAAT GACGTATCTG AGAGGCCAAC ACCATCGATA TTGCGAGGAT TCAGTGCTCC 92858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTTCAAT GACGTATCTG AGAGGCCAAC ACCATCGATA TTGCGAGGAT TCAGTGCTCC 453 CATCAGGCTT GAGTCTGATC TCACTGATAG TGATCTTCTT TTCCTTCTTG CTCATGATTC 92798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAGGCTT GAGTCTGATC TCACTGATAG TGATCTTCTT TTCCTTCTTG CTCATGATTC 513 TGATGAGTTT AACCGGTGCG TATTTTTTAA GTCTCTTGTT CAATACATTT TAGCTGATCA 92738 |||||||||| ||||| TGATGAGTTT AACCG..... .......... .......... .......... .......... 528 CAAATTTGAA TAGTCAAAGA TTAATATGAT CTGTCTCTTA GGTGGGAGGC GGGACAAGTG 92678 ||||||||| |||||||||| .......... .......... .......... .......... .GTGGGAGGC GGGACAAGTG 547 TTGGCAAGGA AGTTGATGCT CAGTCTGGTA GCTGATT 92641 |||||||||| |||||||||| |||||||||| ||||||| TTGGCAAGGA AGTTGATGCT CAGTCTGGTA GCTGATT 584 hqPGS_C08SLe0084H03.1-_SGN-E256827+ (93637 93528,93444 93364,93284 93101,92931 92783,92696 92641) ******************************************************************************** EST sequence 188 +strand 578 n (File: SGN-E272890+) 1 GCACAGATTT ATATTTTGAG AGGCATGATG GTCAAGCAGT AACATGTGAA GACTTTTTTG 61 CTGCCATGCG AGATGCCAAC AATGCAGATT TTGCTAATTT CTTGTTATGG TACTCGCAAG 121 CTGGGACACC TGTAGTGAAG GTTACCACAA ATTATAATGC TGAAGGGCGC ACTTTCTCCC 181 TCAAGTTTAG TCAAGAGGTG CCTCCAACCC CCGGCCAGTC TGCAAAAGAA CCTATGTTTA 241 TTCCTGTTGC TGTAGGTCTG CTGGATTCAA GTGGTAAGGA CATGCCTCTA TCTTCGGTTC 301 ATCATGATGG GAAATTGGAG AGTTTTGCGA GCAGTGGTCA AAACGTATAC ACCACAGTTC 361 TCCGCGTAAC GAAGAAGGAG GAGGAATTTG TGTTCAATGA CGTATCTGAG AGGCCAACAC 421 CATCGATATT GCGAGGATTC AGTGCTCCCA TCAGGCTTGA GTCTGATCTC ACTGATAGTG 481 ATCTTCTTTT CCTTCTTGCT CATGATTCTG ATGAGTTTAA CCGGTGGGAG GCGGGACAAG 541 TGTTGGCAAG GAAGTTGATG CTCAGTCTGG TAGCTGAT Predicted gene structure (within gDNA segment 94236 to 92032): Exon 1 93636 93528 ( 109 n); cDNA 1 109 ( 109 n); score: 1.000 Intron 1 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 2 93444 93364 ( 81 n); cDNA 110 190 ( 81 n); score: 1.000 Intron 2 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 3 93284 93101 ( 184 n); cDNA 191 374 ( 184 n); score: 1.000 Intron 3 93100 92932 ( 169 n); Pd: 0.862 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 92931 92783 ( 149 n); cDNA 375 523 ( 149 n); score: 1.000 Intron 4 92782 92697 ( 86 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 92696 92642 ( 55 n); cDNA 524 578 ( 55 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E272890+ 1.000 578 1.000 C PGS_C08SLe0084H03.1-_SGN-E272890+ (93636 93528,93444 93364,93284 93101,92931 92783,92696 92642) Alignment (genomic DNA sequence = upper lines): GCACAGATTT ATATTTTGAG AGGCATGATG GTCAAGCAGT AACATGTGAA GACTTTTTTG 93577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAGATTT ATATTTTGAG AGGCATGATG GTCAAGCAGT AACATGTGAA GACTTTTTTG 60 CTGCCATGCG AGATGCCAAC AATGCAGATT TTGCTAATTT CTTGTTATGG TAGGCGACTC 93517 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGCCATGCG AGATGCCAAC AATGCAGATT TTGCTAATTT CTTGTTATG. .......... 109 TTCCTTCCCG CCAGTCGAAC CAGTTTTCGT GATTCCCTTC AAAGTTAAGC TTTTAATGAA 93457 .......... .......... .......... .......... .......... .......... 109 ACATAATTGC AGGTACTCGC AAGCTGGGAC ACCTGTAGTG AAGGTTACCA CAAATTATAA 93397 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTACTCGC AAGCTGGGAC ACCTGTAGTG AAGGTTACCA CAAATTATAA 157 TGCTGAAGGG CGCACTTTCT CCCTCAAGTT TAGGTAATAA ACATTAAATG GATTTTTGTT 93337 |||||||||| |||||||||| |||||||||| ||| TGCTGAAGGG CGCACTTTCT CCCTCAAGTT TAG....... .......... .......... 190 TGGACTAACC TATATGGTTT AGCCTAACCT ATTTCATCTA ATGTTTTCCC AGTCAAGAGG 93277 |||||||| .......... .......... .......... .......... .......... ..TCAAGAGG 198 TGCCTCCAAC CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC 93217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCCAAC CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC 258 TGCTGGATTC AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG 93157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGGATTC AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG 318 AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAGGTTA 93097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCACAGT TCTCCGCGTA ACGAAG.... 374 GCCTTGAAGT TTTGATGGAC TGGTGTAGTC AATTCCACTT AATTTAACTC TATATATGCA 93037 .......... .......... .......... .......... .......... .......... 374 GAGCACAATG ATAACTTTGA TCAAATATAT ATGCTTATCC GGCATTTTGT TCCTCCTATG 92977 .......... .......... .......... .......... .......... .......... 374 ACGTAATAAG GATGTAATAA AGGACTTTTT TCTTGTACTG TGCAGAAGGA GGAGGAATTT 92917 ||||| |||||||||| .......... .......... .......... .......... .....AAGGA GGAGGAATTT 389 GTGTTCAATG ACGTATCTGA GAGGCCAACA CCATCGATAT TGCGAGGATT CAGTGCTCCC 92857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTCAATG ACGTATCTGA GAGGCCAACA CCATCGATAT TGCGAGGATT CAGTGCTCCC 449 ATCAGGCTTG AGTCTGATCT CACTGATAGT GATCTTCTTT TCCTTCTTGC TCATGATTCT 92797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGCTTG AGTCTGATCT CACTGATAGT GATCTTCTTT TCCTTCTTGC TCATGATTCT 509 GATGAGTTTA ACCGGTGCGT ATTTTTTAAG TCTCTTGTTC AATACATTTT AGCTGATCAC 92737 |||||||||| |||| GATGAGTTTA ACCG...... .......... .......... .......... .......... 523 AAATTTGAAT AGTCAAAGAT TAATATGATC TGTCTCTTAG GTGGGAGGCG GGACAAGTGT 92677 |||||||||| |||||||||| .......... .......... .......... .......... GTGGGAGGCG GGACAAGTGT 543 TGGCAAGGAA GTTGATGCTC AGTCTGGTAG CTGAT 92642 |||||||||| |||||||||| |||||||||| ||||| TGGCAAGGAA GTTGATGCTC AGTCTGGTAG CTGAT 578 hqPGS_C08SLe0084H03.1-_SGN-E272890+ (93636 93528,93444 93364,93284 93101,92931 92783,92696 92642) ******************************************************************************** EST sequence 163 +strand 436 n (File: SGN-E282411+) 1 TATATGAGAA GGGAGCTGAA GTGGTCAGGA TGTACAAAAC CTTGTTAGGT AGCCAAGGAT 61 TTAGAAAAGG CACAGATTTA TATTTTGAGA GGCATGATGG TCAAGCAGTA ACATGTGAAG 121 ACTTTTTTGC TGCCATGCGA GATGCCAACA ATGCAGATTT TGCTAATTTC TTGTTATGGT 181 ACTCGCAAGC TGGGACACCT GTAGTGAAGG TTACCACAAA TTATAATGCT GAAGGGCGCA 241 CTTTCTCCCT CAAGTTTAGT CAAGAGGTGC CTCCAACCCC CGGCCAGTCT GCAAAAGAAC 301 CTATGTTTAT TCCTGTTGCT GTAGGTCTGC TGGATTCAAG TGGTAAGGAC ATGCCTCTAT 361 CTTCGGTTCA TCATGATGGG AAATTGGAGA GTTTTGCGAG CAGTGGTCAA AACGTATACA 421 CCACAGTTCT CCGCGT Predicted gene structure (within gDNA segment 94485 to 92498): Exon 1 93959 93949 ( 11 n); cDNA 1 11 ( 11 n); score: 1.000 Intron 1 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 2 93793 93737 ( 57 n); cDNA 12 68 ( 57 n); score: 1.000 Intron 2 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 3 93637 93528 ( 110 n); cDNA 69 178 ( 110 n); score: 1.000 Intron 3 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 4 93444 93364 ( 81 n); cDNA 179 259 ( 81 n); score: 1.000 Intron 4 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 5 93284 93108 ( 177 n); cDNA 260 436 ( 177 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E282411+ 1.000 436 1.000 C PGS_C08SLe0084H03.1-_SGN-E282411+ (93959 93949,93793 93737,93637 93528,93444 93364,93284 93108) Alignment (genomic DNA sequence = upper lines): TATATGAGAA GGTAATGCAC TTCCTCTCTT GCCCCTCCTC ATGTGGCATT TTGTGCCTCT 93900 |||||||||| | TATATGAGAA G......... .......... .......... .......... .......... 11 CTTTTTTTCT CCCTTTCCGA TGCCACCAGA TCCAAGACCT TATGTGTGCT TGAAACCATT 93840 .......... .......... .......... .......... .......... .......... 11 TTGTGTTTTG ACTCACCATT GGTTTAATCA CTGTTTCTGT TATCAGGGAG CTGAAGTGGT 93780 |||| |||||||||| .......... .......... .......... .......... ......GGAG CTGAAGTGGT 25 CAGGATGTAC AAAACCTTGT TAGGTAGCCA AGGATTTAGA AAAGTAAGAA AACGATAATC 93720 |||||||||| |||||||||| |||||||||| |||||||||| ||| CAGGATGTAC AAAACCTTGT TAGGTAGCCA AGGATTTAGA AAA....... .......... 68 TCTTGCCTAT TTTTGTTGTA CTGACAAATG ATTTCCGAAC TTCGGAGTCT CAAAAATCTG 93660 .......... .......... .......... .......... .......... .......... 68 ATATACCCCC TTTCCCCTTC AGGGCACAGA TTTATATTTT GAGAGGCATG ATGGTCAAGC 93600 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GGCACAGA TTTATATTTT GAGAGGCATG ATGGTCAAGC 106 AGTAACATGT GAAGACTTTT TTGCTGCCAT GCGAGATGCC AACAATGCAG ATTTTGCTAA 93540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAACATGT GAAGACTTTT TTGCTGCCAT GCGAGATGCC AACAATGCAG ATTTTGCTAA 166 TTTCTTGTTA TGGTAGGCGA CTCTTCCTTC CCGCCAGTCG AACCAGTTTT CGTGATTCCC 93480 |||||||||| || TTTCTTGTTA TG........ .......... .......... .......... .......... 178 TTCAAAGTTA AGCTTTTAAT GAAACATAAT TGCAGGTACT CGCAAGCTGG GACACCTGTA 93420 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTACT CGCAAGCTGG GACACCTGTA 203 GTGAAGGTTA CCACAAATTA TAATGCTGAA GGGCGCACTT TCTCCCTCAA GTTTAGGTAA 93360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GTGAAGGTTA CCACAAATTA TAATGCTGAA GGGCGCACTT TCTCCCTCAA GTTTAG.... 259 TAAACATTAA ATGGATTTTT GTTTGGACTA ACCTATATGG TTTAGCCTAA CCTATTTCAT 93300 .......... .......... .......... .......... .......... .......... 259 CTAATGTTTT CCCAGTCAAG AGGTGCCTCC AACCCCCGGC CAGTCTGCAA AAGAACCTAT 93240 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....TCAAG AGGTGCCTCC AACCCCCGGC CAGTCTGCAA AAGAACCTAT 304 GTTTATTCCT GTTGCTGTAG GTCTGCTGGA TTCAAGTGGT AAGGACATGC CTCTATCTTC 93180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTATTCCT GTTGCTGTAG GTCTGCTGGA TTCAAGTGGT AAGGACATGC CTCTATCTTC 364 GGTTCATCAT GATGGGAAAT TGGAGAGTTT TGCGAGCAGT GGTCAAAACG TATACACCAC 93120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCATCAT GATGGGAAAT TGGAGAGTTT TGCGAGCAGT GGTCAAAACG TATACACCAC 424 AGTTCTCCGC GT 93108 |||||||||| || AGTTCTCCGC GT 436 hqPGS_C08SLe0084H03.1-_SGN-E282411+ (93959 93949,93793 93737,93637 93528,93444 93364,93284 93108) ******************************************************************************** EST sequence 185 +strand 456 n (File: SGN-E338903+) 1 ATATAAAGAT GGATAACTTC TACACAGTTA CGGTATATGA GAAGGGAGCT GAAGTGGTCA 61 GGATGTACAA AACCTTGTTA GGTAGCCAAG GATTTAGAAA AGGCACAGAT TTATATTTTG 121 AGAGGCATGA TGGTCAAGCA GTAACATGTG AAGACTTTTT TGCTGCCATG CGAGATGCCA 181 ACAATGCAGA TTTTGCTAAT TTCTTGTTAT GGTACTCGCA AGCTGGGACA CCTGTAGTGA 241 AGGTTACCAC AAATTATAAT GCTGAAGGGC GCACTTTCTC CCTCAAGTTT AGTCAAGAGG 301 TGCCTCCAAC CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC 361 TGCTGGATTC AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG 421 AGAGTTTTGC GAGCAGTGGT CAAAACGTAT ACACCA Predicted gene structure (within gDNA segment 94815 to 92511): Exon 1 94346 94339 ( 8 n); cDNA 1 8 ( 8 n); score: 1.000 Intron 1 94338 94237 ( 102 n); Pd: 0.972 (s: 0), Pa: 0.998 (s: 0) Exon 2 94236 94218 ( 19 n); cDNA 9 27 ( 19 n); score: 1.000 Intron 2 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 3 94079 94075 ( 5 n); cDNA 28 32 ( 5 n); score: 1.000 Intron 3 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 4 93960 93949 ( 12 n); cDNA 33 44 ( 12 n); score: 1.000 Intron 4 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 5 93793 93737 ( 57 n); cDNA 45 101 ( 57 n); score: 1.000 Intron 5 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 6 93637 93528 ( 110 n); cDNA 102 211 ( 110 n); score: 1.000 Intron 6 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 7 93444 93364 ( 81 n); cDNA 212 292 ( 81 n); score: 1.000 Intron 7 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 8 93284 93121 ( 164 n); cDNA 293 456 ( 164 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E338903+ 1.000 456 1.000 C PGS_C08SLe0084H03.1-_SGN-E338903+ (94346 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93121) Alignment (genomic DNA sequence = upper lines): ATATAAAGGT AGATAATCTC TTTGAATAGG AATGATCCTT GTTTAGCAAA CGCTGGCCCC 94287 |||||||| ATATAAAG.. .......... .......... .......... .......... .......... 8 ACCTTCTTGG AAAATTTTCT CATTCTTCTT CTCTCTTTTT ATGTTGACAG ATGGATAACT 94227 |||||||||| .......... .......... .......... .......... .......... ATGGATAACT 18 TCTACACAGG CAAGTTTGAG TTAACTGTCA TTGAAGAGGA GTTTTAATTT CTTTTGAGCC 94167 ||||||||| TCTACACAG. .......... .......... .......... .......... .......... 27 CAAATTGGAT GATTATTTTT GTTACTGATT GTTACTGATG TTTGGTTGTG ACGGCTGGTC 94107 .......... .......... .......... .......... .......... .......... 27 TGGCTTTGAA TATTCATGAA CATGCAGTTA CGGTAAGATC CTGATAATTC TGTTTTATCA 94047 ||| || .......... .......... .......TTA CG........ .......... .......... 32 TTGTTCTAAC TTTTATGTCC TGGTATCTTT GGTTTCCCAA GGTATTTATT AACTATTGTT 93987 .......... .......... .......... .......... .......... .......... 32 CCTTTGTTCC ATTTTCTCTT TTGCAGGTAT ATGAGAAGGT AATGCACTTC CTCTCTTGCC 93927 |||| |||||||| .......... .......... ......GTAT ATGAGAAG.. .......... .......... 44 CCTCCTCATG TGGCATTTTG TGCCTCTCTT TTTTTCTCCC TTTCCGATGC CACCAGATCC 93867 .......... .......... .......... .......... .......... .......... 44 AAGACCTTAT GTGTGCTTGA AACCATTTTG TGTTTTGACT CACCATTGGT TTAATCACTG 93807 .......... .......... .......... .......... .......... .......... 44 TTTCTGTTAT CAGGGAGCTG AAGTGGTCAG GATGTACAAA ACCTTGTTAG GTAGCCAAGG 93747 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGAGCTG AAGTGGTCAG GATGTACAAA ACCTTGTTAG GTAGCCAAGG 91 ATTTAGAAAA GTAAGAAAAC GATAATCTCT TGCCTATTTT TGTTGTACTG ACAAATGATT 93687 |||||||||| ATTTAGAAAA .......... .......... .......... .......... .......... 101 TCCGAACTTC GGAGTCTCAA AAATCTGATA TACCCCCTTT CCCCTTCAGG GCACAGATTT 93627 | |||||||||| .......... .......... .......... .......... .........G GCACAGATTT 112 ATATTTTGAG AGGCATGATG GTCAAGCAGT AACATGTGAA GACTTTTTTG CTGCCATGCG 93567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTTGAG AGGCATGATG GTCAAGCAGT AACATGTGAA GACTTTTTTG CTGCCATGCG 172 AGATGCCAAC AATGCAGATT TTGCTAATTT CTTGTTATGG TAGGCGACTC TTCCTTCCCG 93507 |||||||||| |||||||||| |||||||||| ||||||||| AGATGCCAAC AATGCAGATT TTGCTAATTT CTTGTTATG. .......... .......... 211 CCAGTCGAAC CAGTTTTCGT GATTCCCTTC AAAGTTAAGC TTTTAATGAA ACATAATTGC 93447 .......... .......... .......... .......... .......... .......... 211 AGGTACTCGC AAGCTGGGAC ACCTGTAGTG AAGGTTACCA CAAATTATAA TGCTGAAGGG 93387 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTACTCGC AAGCTGGGAC ACCTGTAGTG AAGGTTACCA CAAATTATAA TGCTGAAGGG 269 CGCACTTTCT CCCTCAAGTT TAGGTAATAA ACATTAAATG GATTTTTGTT TGGACTAACC 93327 |||||||||| |||||||||| ||| CGCACTTTCT CCCTCAAGTT TAG....... .......... .......... .......... 292 TATATGGTTT AGCCTAACCT ATTTCATCTA ATGTTTTCCC AGTCAAGAGG TGCCTCCAAC 93267 |||||||| |||||||||| .......... .......... .......... .......... ..TCAAGAGG TGCCTCCAAC 310 CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC TGCTGGATTC 93207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCGGCCAG TCTGCAAAAG AACCTATGTT TATTCCTGTT GCTGTAGGTC TGCTGGATTC 370 AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG AGAGTTTTGC 93147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGGTAAG GACATGCCTC TATCTTCGGT TCATCATGAT GGGAAATTGG AGAGTTTTGC 430 GAGCAGTGGT CAAAACGTAT ACACCA 93121 |||||||||| |||||||||| |||||| GAGCAGTGGT CAAAACGTAT ACACCA 456 hqPGS_C08SLe0084H03.1-_SGN-E338903+ (94346 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93121) ******************************************************************************** EST sequence 214 +strand 770 n (File: SGN-E556793+) 1 GATTTTAACA TGGGAGCAAT GGAAAACAAG AGCTTGAATA TATTCAATTC CAAGCTTGTC 61 CTGGCATCCC CAGAAACTGC AACAGATGCT GATTATGCGG CTATATTGGG TGTGATTGGA 121 CATGAGTACT TCCACAATTG GACAGGCAAC AGAGTTACAT GTCGTGACTG GTTCCAGCTC 181 AGTTTAAAGG AAGGACTTAC TGTTTTCCGT GATCAGGAGT TTTCGTCTGA TTTGGGCAGC 241 CGTCCTGTGA AAAGAATTGC TGATGTCTCA AAGCTTCGAA TGTATCAGTT CCCGCAGGAT 301 GCTGGTCCAA TGGCTCATCC TGTAAGGCCT CACTCTTATA TAAAGATGGA TAACTTCTAC 361 ACAGTTACGG TATATGAGAA GGGAGCTGAA GTGGTCAGGA TGTACAAAAC CTTGTTAGGT 421 AGCCAAGGAT TTAGAAAAGG CACAGATTTA TATTTTGAGA GGCATGATGG TCAAGCAGTA 481 ACATGTGAAG ACTTTTTTGC TGCCATGCGA GATGCCAACA ATGCAGATTT TGCTAATTTC 541 TTGTTATGGT ACTCGCAAGC TGGGACACCT GTAGTGAAGG TTACCACAAA TTATAATGCT 601 GAAGGGCGCA CTTTCTCCCT CAAGTTTAGT CAAGAGGTGC CTCCAACCCC CGGCCAGTCT 661 GCAAAAGAAC CTATGTTTAT TCCTGTTGCT GTAGGTCTGC TGGATTCAAG TGGTAAGGAC 721 ATGCCTCTAT CTTCGGTTCA TCATGATGGG AAATTGGAGA GTTTTGCGAG Predicted gene structure (within gDNA segment 96316 to 92534): Exon 1 95582 95572 ( 11 n); cDNA 1 11 ( 11 n); score: 1.000 Intron 1 95571 95445 ( 127 n); Pd: 0.994 (s: 0), Pa: 0.999 (s: 0) Exon 2 95444 95417 ( 28 n); cDNA 12 39 ( 28 n); score: 1.000 Intron 2 95416 95327 ( 90 n); Pd: 0.310 (s: 0), Pa: 1.000 (s: 1.00) Exon 3 95326 95240 ( 87 n); cDNA 40 126 ( 87 n); score: 1.000 Intron 3 95239 95139 ( 101 n); Pd: 0.996 (s: 1.00), Pa: 0.976 (s: 0) Exon 4 95138 95113 ( 26 n); cDNA 127 152 ( 26 n); score: 1.000 Intron 4 95112 94758 ( 355 n); Pd: 0.994 (s: 0), Pa: 0.101 (s: 1.00) Exon 5 94757 94694 ( 64 n); cDNA 153 216 ( 64 n); score: 1.000 Intron 5 94693 94610 ( 84 n); Pd: 0.334 (s: 1.00), Pa: 0.874 (s: 1.00) Exon 6 94609 94529 ( 81 n); cDNA 217 297 ( 81 n); score: 1.000 Intron 6 94528 94387 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 7 94386 94339 ( 48 n); cDNA 298 345 ( 48 n); score: 1.000 Intron 7 94338 94237 ( 102 n); Pd: 0.972 (s: 1.00), Pa: 0.998 (s: 0) Exon 8 94236 94218 ( 19 n); cDNA 346 364 ( 19 n); score: 1.000 Intron 8 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 9 94079 94075 ( 5 n); cDNA 365 369 ( 5 n); score: 1.000 Intron 9 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 10 93960 93949 ( 12 n); cDNA 370 381 ( 12 n); score: 1.000 Intron 10 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 11 93793 93737 ( 57 n); cDNA 382 438 ( 57 n); score: 1.000 Intron 11 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 12 93637 93528 ( 110 n); cDNA 439 548 ( 110 n); score: 1.000 Intron 12 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 13 93444 93364 ( 81 n); cDNA 549 629 ( 81 n); score: 1.000 Intron 13 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 14 93284 93144 ( 141 n); cDNA 630 770 ( 141 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E556793+ 1.000 770 1.000 C PGS_C08SLe0084H03.1-_SGN-E556793+ (95582 95572,95444 95417,95326 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93144) Alignment (genomic DNA sequence = upper lines): GATTTTAACA TGTTAGTTCT CTGGTTTCTT CACTTTGTCA TTATTTATTC TTGACATTTT 95523 |||||||||| | GATTTTAACA T......... .......... .......... .......... .......... 11 TCTTTTCTTC TCTTTGTTTA TCCACTCTCC TAATTTTTTC TGTGGATAAT AACTGTTTTT 95463 .......... .......... .......... .......... .......... .......... 11 TTTTAATTTC ATTTCCAGGG GAGCAATGGA AAACAAGAGC TTGAATGTAT GAGATTTGAG 95403 || |||||||||| |||||||||| |||||| .......... ........GG GAGCAATGGA AAACAAGAGC TTGAAT.... .......... 39 ATGTTATTGC ATTGTATTGC TCTGTTTATG ACTTTTTCTT AATTATCACC TAATTATTTG 95343 .......... .......... .......... .......... .......... .......... 39 ACTTTGTTTT CAACAGATAT TCAATTCCAA GCTTGTCCTG GCATCCCCAG AAACTGCAAC 95283 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......ATAT TCAATTCCAA GCTTGTCCTG GCATCCCCAG AAACTGCAAC 83 AGATGCTGAT TATGCGGCTA TATTGGGTGT GATTGGACAT GAGGTGTGTG ATATGTTTTC 95223 |||||||||| |||||||||| |||||||||| |||||||||| ||| AGATGCTGAT TATGCGGCTA TATTGGGTGT GATTGGACAT GAG....... .......... 126 ATAAGCTATT GAAATTCATG AACTTTATTT TGTTTACTGA TTCTTGAATG CTGAGCAAAT 95163 .......... .......... .......... .......... .......... .......... 126 CACCATTTCT TGTCCGTGTT GCAGTACTTC CACAATTGGA CAGGCAACAG GTTTGTCCAT 95103 |||||| |||||||||| |||||||||| .......... .......... ....TACTTC CACAATTGGA CAGGCAACAG .......... 152 AACCCAATCT TTCCTTCTCA CAGAAAATAA AAAAGCTGGT TAATATAGTA GCTATTTATT 95043 .......... .......... .......... .......... .......... .......... 152 CCATTATATT ACTATTTGTA TCTTCTAGGT CTTTTGGTGT ATAATGGACA ATTATATACT 94983 .......... .......... .......... .......... .......... .......... 152 CAAATTCCTG AAAACACATC AGGAGTTATT AGCCTTTTCT TTAAAAAATT ATTGTAGCTC 94923 .......... .......... .......... .......... .......... .......... 152 TCTATTGTTG CTGCTTCTGA TGAGAAATAA AGTTGCATAT GTTAATTTCA AAAATACTTG 94863 .......... .......... .......... .......... .......... .......... 152 AAGTTTAAAC TTATTTCTTG ATACAAGGCA GTGTACTTGT TTGCTGTGTA CTTTGAGAGT 94803 .......... .......... .......... .......... .......... .......... 152 ATTCTCGTTG TTAGAAACTT CTATTAACTA TTGAGCTCGA TGCAGAGTTA CATGTCGTGA 94743 ||||| |||||||||| .......... .......... .......... .......... .....AGTTA CATGTCGTGA 167 CTGGTTCCAG CTCAGTTTAA AGGAAGGACT TACTGTTTTC CGTGATCAGG TTGGATTTAT 94683 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGGTTCCAG CTCAGTTTAA AGGAAGGACT TACTGTTTTC CGTGATCAG. .......... 216 TCCTGTAGAT GATGGGTATA CAAACAATTT TCTGGTAGCC TTAGCTAATA AGGTTCTTGA 94623 .......... .......... .......... .......... .......... .......... 216 ATGATTCATG CAGGAGTTTT CGTCTGATTT GGGCAGCCGT CCTGTGAAAA GAATTGCTGA 94563 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GAGTTTT CGTCTGATTT GGGCAGCCGT CCTGTGAAAA GAATTGCTGA 263 TGTCTCAAAG CTTCGAATGT ATCAGTTCCC GCAGGTTCAA AGACTTCTTT AAGTTCTTTC 94503 |||||||||| |||||||||| |||||||||| |||| TGTCTCAAAG CTTCGAATGT ATCAGTTCCC GCAG...... .......... .......... 297 ATTACAATAT TCCTACTTCT TATATATACA TGGATTGCCA AATCAAAATG CTCCACAATG 94443 .......... .......... .......... .......... .......... .......... 297 AGCTACTGAA TTGTGGATAA CTAGTTAAAT TTGCTACTAT TATCCTCATT TTTTAGGATG 94383 |||| .......... .......... .......... .......... .......... ......GATG 301 CTGGTCCAAT GGCTCATCCT GTAAGGCCTC ACTCTTATAT AAAGGTAGAT AATCTCTTTG 94323 |||||||||| |||||||||| |||||||||| |||||||||| |||| CTGGTCCAAT GGCTCATCCT GTAAGGCCTC ACTCTTATAT AAAG...... .......... 345 AATAGGAATG ATCCTTGTTT AGCAAACGCT GGCCCCACCT TCTTGGAAAA TTTTCTCATT 94263 .......... .......... .......... .......... .......... .......... 345 CTTCTTCTCT CTTTTTATGT TGACAGATGG ATAACTTCTA CACAGGCAAG TTTGAGTTAA 94203 |||| |||||||||| ||||| .......... .......... ......ATGG ATAACTTCTA CACAG..... .......... 364 CTGTCATTGA AGAGGAGTTT TAATTTCTTT TGAGCCCAAA TTGGATGATT ATTTTTGTTA 94143 .......... .......... .......... .......... .......... .......... 364 CTGATTGTTA CTGATGTTTG GTTGTGACGG CTGGTCTGGC TTTGAATATT CATGAACATG 94083 .......... .......... .......... .......... .......... .......... 364 CAGTTACGGT AAGATCCTGA TAATTCTGTT TTATCATTGT TCTAACTTTT ATGTCCTGGT 94023 ||||| ...TTACG.. .......... .......... .......... .......... .......... 369 ATCTTTGGTT TCCCAAGGTA TTTATTAACT ATTGTTCCTT TGTTCCATTT TCTCTTTTGC 93963 .......... .......... .......... .......... .......... .......... 369 AGGTATATGA GAAGGTAATG CACTTCCTCT CTTGCCCCTC CTCATGTGGC ATTTTGTGCC 93903 |||||||| |||| ..GTATATGA GAAG...... .......... .......... .......... .......... 381 TCTCTTTTTT TCTCCCTTTC CGATGCCACC AGATCCAAGA CCTTATGTGT GCTTGAAACC 93843 .......... .......... .......... .......... .......... .......... 381 ATTTTGTGTT TTGACTCACC ATTGGTTTAA TCACTGTTTC TGTTATCAGG GAGCTGAAGT 93783 | |||||||||| .......... .......... .......... .......... .........G GAGCTGAAGT 392 GGTCAGGATG TACAAAACCT TGTTAGGTAG CCAAGGATTT AGAAAAGTAA GAAAACGATA 93723 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGTCAGGATG TACAAAACCT TGTTAGGTAG CCAAGGATTT AGAAAA.... .......... 438 ATCTCTTGCC TATTTTTGTT GTACTGACAA ATGATTTCCG AACTTCGGAG TCTCAAAAAT 93663 .......... .......... .......... .......... .......... .......... 438 CTGATATACC CCCTTTCCCC TTCAGGGCAC AGATTTATAT TTTGAGAGGC ATGATGGTCA 93603 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGCAC AGATTTATAT TTTGAGAGGC ATGATGGTCA 473 AGCAGTAACA TGTGAAGACT TTTTTGCTGC CATGCGAGAT GCCAACAATG CAGATTTTGC 93543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGTAACA TGTGAAGACT TTTTTGCTGC CATGCGAGAT GCCAACAATG CAGATTTTGC 533 TAATTTCTTG TTATGGTAGG CGACTCTTCC TTCCCGCCAG TCGAACCAGT TTTCGTGATT 93483 |||||||||| ||||| TAATTTCTTG TTATG..... .......... .......... .......... .......... 548 CCCTTCAAAG TTAAGCTTTT AATGAAACAT AATTGCAGGT ACTCGCAAGC TGGGACACCT 93423 || |||||||||| |||||||||| .......... .......... .......... ........GT ACTCGCAAGC TGGGACACCT 570 GTAGTGAAGG TTACCACAAA TTATAATGCT GAAGGGCGCA CTTTCTCCCT CAAGTTTAGG 93363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTAGTGAAGG TTACCACAAA TTATAATGCT GAAGGGCGCA CTTTCTCCCT CAAGTTTAG. 629 TAATAAACAT TAAATGGATT TTTGTTTGGA CTAACCTATA TGGTTTAGCC TAACCTATTT 93303 .......... .......... .......... .......... .......... .......... 629 CATCTAATGT TTTCCCAGTC AAGAGGTGCC TCCAACCCCC GGCCAGTCTG CAAAAGAACC 93243 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........TC AAGAGGTGCC TCCAACCCCC GGCCAGTCTG CAAAAGAACC 671 TATGTTTATT CCTGTTGCTG TAGGTCTGCT GGATTCAAGT GGTAAGGACA TGCCTCTATC 93183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTTTATT CCTGTTGCTG TAGGTCTGCT GGATTCAAGT GGTAAGGACA TGCCTCTATC 731 TTCGGTTCAT CATGATGGGA AATTGGAGAG TTTTGCGAG 93144 |||||||||| |||||||||| |||||||||| ||||||||| TTCGGTTCAT CATGATGGGA AATTGGAGAG TTTTGCGAG 770 hqPGS_C08SLe0084H03.1-_SGN-E556793+ (95582 95572,95444 95417,95326 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93144) ******************************************************************************** EST sequence 187 +strand 323 n (File: SGN-E261262+) 1 AAAAGGCACA GATTTATATT TTGAGAGGCA TGATGGTCAA GCAGTAACAT GTGAAGACTT 61 TTTTGCTGCC ATGCGAGATG CCAACAATGC AGATTTTGCT AATTTCTTGT TATGGTACTC 121 GCAAGCTGGG ACACCTGTAG TGAAGGTTAC CACAAATTAT AATGCTGAAG GGCGCACTTT 181 CTCCCTCAAG TTTAGTCAAG AGGTGCCTCC AACCCCCGGC CAGTCTGCAA AAGAACCTAT 241 GTTTATTCCT GTTGCTGTAG GTCTGCTGGA TTCAAGTGGT AAGGACATGC CTCTATCTTC 301 GGTTCATCAT GATGGGAAAT TGG Predicted gene structure (within gDNA segment 94277 to 92547): Exon 1 93637 93528 ( 110 n); cDNA 5 114 ( 110 n); score: 1.000 Intron 1 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 2 93444 93364 ( 81 n); cDNA 115 195 ( 81 n); score: 1.000 Intron 2 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 3 93284 93157 ( 128 n); cDNA 196 323 ( 128 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E261262+ 1.000 319 0.988 C PGS_C08SLe0084H03.1-_SGN-E261262+ (93637 93528,93444 93364,93284 93157) Alignment (genomic DNA sequence = upper lines): GGCACAGATT TATATTTTGA GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT 93578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCACAGATT TATATTTTGA GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT 64 GCTGCCATGC GAGATGCCAA CAATGCAGAT TTTGCTAATT TCTTGTTATG GTAGGCGACT 93518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCCATGC GAGATGCCAA CAATGCAGAT TTTGCTAATT TCTTGTTATG .......... 114 CTTCCTTCCC GCCAGTCGAA CCAGTTTTCG TGATTCCCTT CAAAGTTAAG CTTTTAATGA 93458 .......... .......... .......... .......... .......... .......... 114 AACATAATTG CAGGTACTCG CAAGCTGGGA CACCTGTAGT GAAGGTTACC ACAAATTATA 93398 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTACTCG CAAGCTGGGA CACCTGTAGT GAAGGTTACC ACAAATTATA 161 ATGCTGAAGG GCGCACTTTC TCCCTCAAGT TTAGGTAATA AACATTAAAT GGATTTTTGT 93338 |||||||||| |||||||||| |||||||||| |||| ATGCTGAAGG GCGCACTTTC TCCCTCAAGT TTAG...... .......... .......... 195 TTGGACTAAC CTATATGGTT TAGCCTAACC TATTTCATCT AATGTTTTCC CAGTCAAGAG 93278 ||||||| .......... .......... .......... .......... .......... ...TCAAGAG 202 GTGCCTCCAA CCCCCGGCCA GTCTGCAAAA GAACCTATGT TTATTCCTGT TGCTGTAGGT 93218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTCCAA CCCCCGGCCA GTCTGCAAAA GAACCTATGT TTATTCCTGT TGCTGTAGGT 262 CTGCTGGATT CAAGTGGTAA GGACATGCCT CTATCTTCGG TTCATCATGA TGGGAAATTG 93158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGGATT CAAGTGGTAA GGACATGCCT CTATCTTCGG TTCATCATGA TGGGAAATTG 322 G 93157 | G 323 hqPGS_C08SLe0084H03.1-_SGN-E261262+ (93637 93528,93444 93364,93284 93157) ******************************************************************************** EST sequence 182 +strand 526 n (File: SGN-E254450+) 1 TTCCGTGATC AGGAGTTTTC GTCTGTTTTG GGCAGCCGTC CTGTGAAAAG AATTGCTGAT 61 GTCTCAAAGC TTCGAATGTA TCAGTTCCCG CAGGATGCTG GTCCAATGGC TCATCCTGTA 121 AGGCCTCACT CTTATATAAA GATGGATAAC TTCTACACAG TTACGGTATA TGAGAAGGGA 181 GCTGAAGTGG TCAGGATGTA CAAAACCTTG TTAGGTAGCC AAGGATTTAG AAAAGGCACA 241 GATTTATATT TTGAGAGGCA TGATGGTCAA GCAGTAACAT GTGAAGACTT TTTTGCTGCC 301 ATGCGAGATG CCAACAATGC AGATTTTGCT AATTTCTTGT TATGGTACTC GCAAGCTGGG 361 ACACCTGTAG TGAAGGTTAC CACAAATTAT AATGCTGAAG GGCGCACTTT CTCCCTCAAG 421 TTTAGTCAAG AGGTGCCTCC AACCCCCGGC CAGTCTGCAA AAGAACCTAT GTTTATTCCT 481 GTTGCTGTAA GTCTGCTGGA TTCAAGTGGT AAAGACATGC CTCTAT Predicted gene structure (within gDNA segment 95302 to 92448): Exon 1 94705 94694 ( 12 n); cDNA 1 12 ( 12 n); score: 1.000 Intron 1 94693 94610 ( 84 n); Pd: 0.334 (s: 0), Pa: 0.874 (s: 0.98) Exon 2 94609 94529 ( 81 n); cDNA 13 93 ( 81 n); score: 0.988 Intron 2 94528 94387 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 94386 94339 ( 48 n); cDNA 94 141 ( 48 n); score: 1.000 Intron 3 94338 94237 ( 102 n); Pd: 0.972 (s: 1.00), Pa: 0.998 (s: 0) Exon 4 94236 94218 ( 19 n); cDNA 142 160 ( 19 n); score: 1.000 Intron 4 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 5 94079 94075 ( 5 n); cDNA 161 165 ( 5 n); score: 1.000 Intron 5 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 6 93960 93949 ( 12 n); cDNA 166 177 ( 12 n); score: 1.000 Intron 6 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 7 93793 93737 ( 57 n); cDNA 178 234 ( 57 n); score: 1.000 Intron 7 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 8 93637 93528 ( 110 n); cDNA 235 344 ( 110 n); score: 1.000 Intron 8 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 9 93444 93364 ( 81 n); cDNA 345 425 ( 81 n); score: 1.000 Intron 9 93363 93285 ( 79 n); Pd: 0.993 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 10 93284 93184 ( 101 n); cDNA 426 526 ( 101 n); score: 0.980 MATCH C08SLe0084H03.1- SGN-E254450+ 0.993 526 1.000 C PGS_C08SLe0084H03.1-_SGN-E254450+ (94705 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93184) Alignment (genomic DNA sequence = upper lines): TTCCGTGATC AGGTTGGATT TATTCCTGTA GATGATGGGT ATACAAACAA TTTTCTGGTA 94646 |||||||||| || TTCCGTGATC AG........ .......... .......... .......... .......... 12 GCCTTAGCTA ATAAGGTTCT TGAATGATTC ATGCAGGAGT TTTCGTCTGA TTTGGGCAGC 94586 |||| ||||||||| |||||||||| .......... .......... .......... ......GAGT TTTCGTCTGT TTTGGGCAGC 36 CGTCCTGTGA AAAGAATTGC TGATGTCTCA AAGCTTCGAA TGTATCAGTT CCCGCAGGTT 94526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGTCCTGTGA AAAGAATTGC TGATGTCTCA AAGCTTCGAA TGTATCAGTT CCCGCAG... 93 CAAAGACTTC TTTAAGTTCT TTCATTACAA TATTCCTACT TCTTATATAT ACATGGATTG 94466 .......... .......... .......... .......... .......... .......... 93 CCAAATCAAA ATGCTCCACA ATGAGCTACT GAATTGTGGA TAACTAGTTA AATTTGCTAC 94406 .......... .......... .......... .......... .......... .......... 93 TATTATCCTC ATTTTTTAGG ATGCTGGTCC AATGGCTCAT CCTGTAAGGC CTCACTCTTA 94346 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G ATGCTGGTCC AATGGCTCAT CCTGTAAGGC CTCACTCTTA 134 TATAAAGGTA GATAATCTCT TTGAATAGGA ATGATCCTTG TTTAGCAAAC GCTGGCCCCA 94286 ||||||| TATAAAG... .......... .......... .......... .......... .......... 141 CCTTCTTGGA AAATTTTCTC ATTCTTCTTC TCTCTTTTTA TGTTGACAGA TGGATAACTT 94226 | |||||||||| .......... .......... .......... .......... .........A TGGATAACTT 152 CTACACAGGC AAGTTTGAGT TAACTGTCAT TGAAGAGGAG TTTTAATTTC TTTTGAGCCC 94166 |||||||| CTACACAG.. .......... .......... .......... .......... .......... 160 AAATTGGATG ATTATTTTTG TTACTGATTG TTACTGATGT TTGGTTGTGA CGGCTGGTCT 94106 .......... .......... .......... .......... .......... .......... 160 GGCTTTGAAT ATTCATGAAC ATGCAGTTAC GGTAAGATCC TGATAATTCT GTTTTATCAT 94046 |||| | .......... .......... ......TTAC G......... .......... .......... 165 TGTTCTAACT TTTATGTCCT GGTATCTTTG GTTTCCCAAG GTATTTATTA ACTATTGTTC 93986 .......... .......... .......... .......... .......... .......... 165 CTTTGTTCCA TTTTCTCTTT TGCAGGTATA TGAGAAGGTA ATGCACTTCC TCTCTTGCCC 93926 ||||| ||||||| .......... .......... .....GTATA TGAGAAG... .......... .......... 177 CTCCTCATGT GGCATTTTGT GCCTCTCTTT TTTTCTCCCT TTCCGATGCC ACCAGATCCA 93866 .......... .......... .......... .......... .......... .......... 177 AGACCTTATG TGTGCTTGAA ACCATTTTGT GTTTTGACTC ACCATTGGTT TAATCACTGT 93806 .......... .......... .......... .......... .......... .......... 177 TTCTGTTATC AGGGAGCTGA AGTGGTCAGG ATGTACAAAA CCTTGTTAGG TAGCCAAGGA 93746 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGAGCTGA AGTGGTCAGG ATGTACAAAA CCTTGTTAGG TAGCCAAGGA 225 TTTAGAAAAG TAAGAAAACG ATAATCTCTT GCCTATTTTT GTTGTACTGA CAAATGATTT 93686 ||||||||| TTTAGAAAA. .......... .......... .......... .......... .......... 234 CCGAACTTCG GAGTCTCAAA AATCTGATAT ACCCCCTTTC CCCTTCAGGG CACAGATTTA 93626 || |||||||||| .......... .......... .......... .......... ........GG CACAGATTTA 246 TATTTTGAGA GGCATGATGG TCAAGCAGTA ACATGTGAAG ACTTTTTTGC TGCCATGCGA 93566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTGAGA GGCATGATGG TCAAGCAGTA ACATGTGAAG ACTTTTTTGC TGCCATGCGA 306 GATGCCAACA ATGCAGATTT TGCTAATTTC TTGTTATGGT AGGCGACTCT TCCTTCCCGC 93506 |||||||||| |||||||||| |||||||||| |||||||| GATGCCAACA ATGCAGATTT TGCTAATTTC TTGTTATG.. .......... .......... 344 CAGTCGAACC AGTTTTCGTG ATTCCCTTCA AAGTTAAGCT TTTAATGAAA CATAATTGCA 93446 .......... .......... .......... .......... .......... .......... 344 GGTACTCGCA AGCTGGGACA CCTGTAGTGA AGGTTACCAC AAATTATAAT GCTGAAGGGC 93386 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTACTCGCA AGCTGGGACA CCTGTAGTGA AGGTTACCAC AAATTATAAT GCTGAAGGGC 403 GCACTTTCTC CCTCAAGTTT AGGTAATAAA CATTAAATGG ATTTTTGTTT GGACTAACCT 93326 |||||||||| |||||||||| || GCACTTTCTC CCTCAAGTTT AG........ .......... .......... .......... 425 ATATGGTTTA GCCTAACCTA TTTCATCTAA TGTTTTCCCA GTCAAGAGGT GCCTCCAACC 93266 ||||||||| |||||||||| .......... .......... .......... .......... .TCAAGAGGT GCCTCCAACC 444 CCCGGCCAGT CTGCAAAAGA ACCTATGTTT ATTCCTGTTG CTGTAGGTCT GCTGGATTCA 93206 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CCCGGCCAGT CTGCAAAAGA ACCTATGTTT ATTCCTGTTG CTGTAAGTCT GCTGGATTCA 504 AGTGGTAAGG ACATGCCTCT AT 93184 |||||||| | |||||||||| || AGTGGTAAAG ACATGCCTCT AT 526 hqPGS_C08SLe0084H03.1-_SGN-E254450+ (94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93184) ******************************************************************************** EST sequence 260 +strand 388 n (File: SGN-E311926+) 1 TCCTGTGAAA AGAATTGCTG ATGTCTCAAA GCTTCGAATG TATCAGTTCC CGCAGGATGC 61 TGGTCCAATG GCTCATCCTG TAAGGCCTCA CTCTTATATA AAGATGGATA ACTTCTACAC 121 AGTTACGGTA TATGAGAAGG GAGCTGAAGT GGTCAGGATG TACAAAACCT TGTTAGGTAG 181 CCAAGGATTT AGAAAAGGCA CAGATTTATA TTTTGAGAGG CATGATGGTC AAGCAGTAAC 241 ATGTGAAGAC TTTTTTGCTG CCATGCGAGA TGCCAACAAT GCAGATTTTG CTAATTTCTT 301 GTTATGGTAC TCGCAAGCTG GGACACCTGT AGTGAAGGTT ACCACAAATT ATAATGCTGA 361 AGGGCGCACT TTCTCCCTCA AGTTTAGT Predicted gene structure (within gDNA segment 95183 to 92744): Exon 1 94583 94529 ( 55 n); cDNA 1 55 ( 55 n); score: 1.000 Intron 1 94528 94387 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 94386 94339 ( 48 n); cDNA 56 103 ( 48 n); score: 1.000 Intron 2 94338 94237 ( 102 n); Pd: 0.972 (s: 1.00), Pa: 0.998 (s: 0) Exon 3 94236 94218 ( 19 n); cDNA 104 122 ( 19 n); score: 1.000 Intron 3 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 4 94079 94075 ( 5 n); cDNA 123 127 ( 5 n); score: 1.000 Intron 4 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 5 93960 93949 ( 12 n); cDNA 128 139 ( 12 n); score: 1.000 Intron 5 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 6 93793 93737 ( 57 n); cDNA 140 196 ( 57 n); score: 1.000 Intron 6 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 7 93637 93528 ( 110 n); cDNA 197 306 ( 110 n); score: 1.000 Intron 7 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 8 93444 93364 ( 81 n); cDNA 307 387 ( 81 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E311926+ 1.000 387 0.997 C PGS_C08SLe0084H03.1-_SGN-E311926+ (94583 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364) Alignment (genomic DNA sequence = upper lines): TCCTGTGAAA AGAATTGCTG ATGTCTCAAA GCTTCGAATG TATCAGTTCC CGCAGGTTCA 94524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCCTGTGAAA AGAATTGCTG ATGTCTCAAA GCTTCGAATG TATCAGTTCC CGCAG..... 55 AAGACTTCTT TAAGTTCTTT CATTACAATA TTCCTACTTC TTATATATAC ATGGATTGCC 94464 .......... .......... .......... .......... .......... .......... 55 AAATCAAAAT GCTCCACAAT GAGCTACTGA ATTGTGGATA ACTAGTTAAA TTTGCTACTA 94404 .......... .......... .......... .......... .......... .......... 55 TTATCCTCAT TTTTTAGGAT GCTGGTCCAA TGGCTCATCC TGTAAGGCCT CACTCTTATA 94344 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GAT GCTGGTCCAA TGGCTCATCC TGTAAGGCCT CACTCTTATA 98 TAAAGGTAGA TAATCTCTTT GAATAGGAAT GATCCTTGTT TAGCAAACGC TGGCCCCACC 94284 ||||| TAAAG..... .......... .......... .......... .......... .......... 103 TTCTTGGAAA ATTTTCTCAT TCTTCTTCTC TCTTTTTATG TTGACAGATG GATAACTTCT 94224 ||| |||||||||| .......... .......... .......... .......... .......ATG GATAACTTCT 116 ACACAGGCAA GTTTGAGTTA ACTGTCATTG AAGAGGAGTT TTAATTTCTT TTGAGCCCAA 94164 |||||| ACACAG.... .......... .......... .......... .......... .......... 122 ATTGGATGAT TATTTTTGTT ACTGATTGTT ACTGATGTTT GGTTGTGACG GCTGGTCTGG 94104 .......... .......... .......... .......... .......... .......... 122 CTTTGAATAT TCATGAACAT GCAGTTACGG TAAGATCCTG ATAATTCTGT TTTATCATTG 94044 ||||| .......... .......... ....TTACG. .......... .......... .......... 127 TTCTAACTTT TATGTCCTGG TATCTTTGGT TTCCCAAGGT ATTTATTAAC TATTGTTCCT 93984 .......... .......... .......... .......... .......... .......... 127 TTGTTCCATT TTCTCTTTTG CAGGTATATG AGAAGGTAAT GCACTTCCTC TCTTGCCCCT 93924 ||||||| ||||| .......... .......... ...GTATATG AGAAG..... .......... .......... 139 CCTCATGTGG CATTTTGTGC CTCTCTTTTT TTCTCCCTTT CCGATGCCAC CAGATCCAAG 93864 .......... .......... .......... .......... .......... .......... 139 ACCTTATGTG TGCTTGAAAC CATTTTGTGT TTTGACTCAC CATTGGTTTA ATCACTGTTT 93804 .......... .......... .......... .......... .......... .......... 139 CTGTTATCAG GGAGCTGAAG TGGTCAGGAT GTACAAAACC TTGTTAGGTA GCCAAGGATT 93744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GGAGCTGAAG TGGTCAGGAT GTACAAAACC TTGTTAGGTA GCCAAGGATT 189 TAGAAAAGTA AGAAAACGAT AATCTCTTGC CTATTTTTGT TGTACTGACA AATGATTTCC 93684 ||||||| TAGAAAA... .......... .......... .......... .......... .......... 196 GAACTTCGGA GTCTCAAAAA TCTGATATAC CCCCTTTCCC CTTCAGGGCA CAGATTTATA 93624 |||| |||||||||| .......... .......... .......... .......... ......GGCA CAGATTTATA 210 TTTTGAGAGG CATGATGGTC AAGCAGTAAC ATGTGAAGAC TTTTTTGCTG CCATGCGAGA 93564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGAGAGG CATGATGGTC AAGCAGTAAC ATGTGAAGAC TTTTTTGCTG CCATGCGAGA 270 TGCCAACAAT GCAGATTTTG CTAATTTCTT GTTATGGTAG GCGACTCTTC CTTCCCGCCA 93504 |||||||||| |||||||||| |||||||||| |||||| TGCCAACAAT GCAGATTTTG CTAATTTCTT GTTATG.... .......... .......... 306 GTCGAACCAG TTTTCGTGAT TCCCTTCAAA GTTAAGCTTT TAATGAAACA TAATTGCAGG 93444 | .......... .......... .......... .......... .......... .........G 307 TACTCGCAAG CTGGGACACC TGTAGTGAAG GTTACCACAA ATTATAATGC TGAAGGGCGC 93384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTCGCAAG CTGGGACACC TGTAGTGAAG GTTACCACAA ATTATAATGC TGAAGGGCGC 367 ACTTTCTCCC TCAAGTTTAG 93364 |||||||||| |||||||||| ACTTTCTCCC TCAAGTTTAG 387 hqPGS_C08SLe0084H03.1-_SGN-E311926+ (94583 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364) ******************************************************************************** EST sequence 192 +strand 468 n (File: SGN-E203748+) 1 AACAGAGTTA CATGTCGTGA CTGGTTCCAG CTCAGTTTAA AGGAAGGACT TACTGTTTTC 61 CGTGATCAGG AGTTTTCGTC TGATTTGGGC AGCCGTCCTG TGAAAAGAAT TGCTGATGTC 121 TCAAAGCTTC GAATGTATCA GTTCCCGCAG GATGCTGGTC CAATGGCTCA TCCTGTAAGG 181 CCTCACTCTT ATATAAAGAT GGATAACTTC TACACAGTTA CGGTATATGA GAAGGGAGCT 241 GAAGTGGTCA GGATGTACAA AACCTTGTTA GGTAGCCAAG GATTTAGAAA AGGCACAGAT 301 TTATATTTTG AGAGGCATGA TGGTCAAGCA GTAACATGTG AAGACTTTTT TGCTGCCATG 361 CGAGATGCCA ACAATGCAGA TTTTGCTAAT TTCTTGTTAT GGTACTCGCA AGCTGGGACA 421 CCTGTAGTGA AGGTTACCAC AAATTATAAT GCTGAAGGGC GCACTTTC Predicted gene structure (within gDNA segment 95380 to 92768): Exon 1 95117 95113 ( 5 n); cDNA 1 5 ( 5 n); score: 1.000 Intron 1 95112 94758 ( 355 n); Pd: 0.994 (s: 0), Pa: 0.101 (s: 1.00) Exon 2 94757 94694 ( 64 n); cDNA 6 69 ( 64 n); score: 1.000 Intron 2 94693 94610 ( 84 n); Pd: 0.334 (s: 1.00), Pa: 0.874 (s: 1.00) Exon 3 94609 94529 ( 81 n); cDNA 70 150 ( 81 n); score: 1.000 Intron 3 94528 94387 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 94386 94339 ( 48 n); cDNA 151 198 ( 48 n); score: 1.000 Intron 4 94338 94237 ( 102 n); Pd: 0.972 (s: 1.00), Pa: 0.998 (s: 0) Exon 5 94236 94218 ( 19 n); cDNA 199 217 ( 19 n); score: 1.000 Intron 5 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 6 94079 94075 ( 5 n); cDNA 218 222 ( 5 n); score: 1.000 Intron 6 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 7 93960 93949 ( 12 n); cDNA 223 234 ( 12 n); score: 1.000 Intron 7 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 8 93793 93737 ( 57 n); cDNA 235 291 ( 57 n); score: 1.000 Intron 8 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 9 93637 93528 ( 110 n); cDNA 292 401 ( 110 n); score: 1.000 Intron 9 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 10 93444 93378 ( 67 n); cDNA 402 468 ( 67 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E203748+ 1.000 468 1.000 C PGS_C08SLe0084H03.1-_SGN-E203748+ (95117 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93378) Alignment (genomic DNA sequence = upper lines): AACAGGTTTG TCCATAACCC AATCTTTCCT TCTCACAGAA AATAAAAAAG CTGGTTAATA 95058 ||||| AACAG..... .......... .......... .......... .......... .......... 5 TAGTAGCTAT TTATTCCATT ATATTACTAT TTGTATCTTC TAGGTCTTTT GGTGTATAAT 94998 .......... .......... .......... .......... .......... .......... 5 GGACAATTAT ATACTCAAAT TCCTGAAAAC ACATCAGGAG TTATTAGCCT TTTCTTTAAA 94938 .......... .......... .......... .......... .......... .......... 5 AAATTATTGT AGCTCTCTAT TGTTGCTGCT TCTGATGAGA AATAAAGTTG CATATGTTAA 94878 .......... .......... .......... .......... .......... .......... 5 TTTCAAAAAT ACTTGAAGTT TAAACTTATT TCTTGATACA AGGCAGTGTA CTTGTTTGCT 94818 .......... .......... .......... .......... .......... .......... 5 GTGTACTTTG AGAGTATTCT CGTTGTTAGA AACTTCTATT AACTATTGAG CTCGATGCAG 94758 .......... .......... .......... .......... .......... .......... 5 AGTTACATGT CGTGACTGGT TCCAGCTCAG TTTAAAGGAA GGACTTACTG TTTTCCGTGA 94698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACATGT CGTGACTGGT TCCAGCTCAG TTTAAAGGAA GGACTTACTG TTTTCCGTGA 65 TCAGGTTGGA TTTATTCCTG TAGATGATGG GTATACAAAC AATTTTCTGG TAGCCTTAGC 94638 |||| TCAG...... .......... .......... .......... .......... .......... 69 TAATAAGGTT CTTGAATGAT TCATGCAGGA GTTTTCGTCT GATTTGGGCA GCCGTCCTGT 94578 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA GTTTTCGTCT GATTTGGGCA GCCGTCCTGT 101 GAAAAGAATT GCTGATGTCT CAAAGCTTCG AATGTATCAG TTCCCGCAGG TTCAAAGACT 94518 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAAAGAATT GCTGATGTCT CAAAGCTTCG AATGTATCAG TTCCCGCAG. .......... 150 TCTTTAAGTT CTTTCATTAC AATATTCCTA CTTCTTATAT ATACATGGAT TGCCAAATCA 94458 .......... .......... .......... .......... .......... .......... 150 AAATGCTCCA CAATGAGCTA CTGAATTGTG GATAACTAGT TAAATTTGCT ACTATTATCC 94398 .......... .......... .......... .......... .......... .......... 150 TCATTTTTTA GGATGCTGGT CCAATGGCTC ATCCTGTAAG GCCTCACTCT TATATAAAGG 94338 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| .......... .GATGCTGGT CCAATGGCTC ATCCTGTAAG GCCTCACTCT TATATAAAG. 198 TAGATAATCT CTTTGAATAG GAATGATCCT TGTTTAGCAA ACGCTGGCCC CACCTTCTTG 94278 .......... .......... .......... .......... .......... .......... 198 GAAAATTTTC TCATTCTTCT TCTCTCTTTT TATGTTGACA GATGGATAAC TTCTACACAG 94218 ||||||||| |||||||||| .......... .......... .......... .......... .ATGGATAAC TTCTACACAG 217 GCAAGTTTGA GTTAACTGTC ATTGAAGAGG AGTTTTAATT TCTTTTGAGC CCAAATTGGA 94158 .......... .......... .......... .......... .......... .......... 217 TGATTATTTT TGTTACTGAT TGTTACTGAT GTTTGGTTGT GACGGCTGGT CTGGCTTTGA 94098 .......... .......... .......... .......... .......... .......... 217 ATATTCATGA ACATGCAGTT ACGGTAAGAT CCTGATAATT CTGTTTTATC ATTGTTCTAA 94038 || ||| .......... ........TT ACG....... .......... .......... .......... 222 CTTTTATGTC CTGGTATCTT TGGTTTCCCA AGGTATTTAT TAACTATTGT TCCTTTGTTC 93978 .......... .......... .......... .......... .......... .......... 222 CATTTTCTCT TTTGCAGGTA TATGAGAAGG TAATGCACTT CCTCTCTTGC CCCTCCTCAT 93918 ||| ||||||||| .......... .......GTA TATGAGAAG. .......... .......... .......... 234 GTGGCATTTT GTGCCTCTCT TTTTTTCTCC CTTTCCGATG CCACCAGATC CAAGACCTTA 93858 .......... .......... .......... .......... .......... .......... 234 TGTGTGCTTG AAACCATTTT GTGTTTTGAC TCACCATTGG TTTAATCACT GTTTCTGTTA 93798 .......... .......... .......... .......... .......... .......... 234 TCAGGGAGCT GAAGTGGTCA GGATGTACAA AACCTTGTTA GGTAGCCAAG GATTTAGAAA 93738 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GGAGCT GAAGTGGTCA GGATGTACAA AACCTTGTTA GGTAGCCAAG GATTTAGAAA 290 AGTAAGAAAA CGATAATCTC TTGCCTATTT TTGTTGTACT GACAAATGAT TTCCGAACTT 93678 | A......... .......... .......... .......... .......... .......... 291 CGGAGTCTCA AAAATCTGAT ATACCCCCTT TCCCCTTCAG GGCACAGATT TATATTTTGA 93618 |||||||||| |||||||||| .......... .......... .......... .......... GGCACAGATT TATATTTTGA 311 GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT GCTGCCATGC GAGATGCCAA 93558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT GCTGCCATGC GAGATGCCAA 371 CAATGCAGAT TTTGCTAATT TCTTGTTATG GTAGGCGACT CTTCCTTCCC GCCAGTCGAA 93498 |||||||||| |||||||||| |||||||||| CAATGCAGAT TTTGCTAATT TCTTGTTATG .......... .......... .......... 401 CCAGTTTTCG TGATTCCCTT CAAAGTTAAG CTTTTAATGA AACATAATTG CAGGTACTCG 93438 ||||||| .......... .......... .......... .......... .......... ...GTACTCG 408 CAAGCTGGGA CACCTGTAGT GAAGGTTACC ACAAATTATA ATGCTGAAGG GCGCACTTTC 93378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCTGGGA CACCTGTAGT GAAGGTTACC ACAAATTATA ATGCTGAAGG GCGCACTTTC 468 hqPGS_C08SLe0084H03.1-_SGN-E203748+ (94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93378) ******************************************************************************** EST sequence 224 +strand 210 n (File: SGN-E290100+) 1 AAAACCTTGT TAGGTAGCCA AGGATTTAGA AAAGGCACAG ATTTATATTT TGAGAGGCAT 61 GATGGTCAAG CAGTAACATG TGAAGACTTT TTTGCTGCCA TGCGAGATGC CAACAATGCA 121 GATTTTGCTA ATTTCTTGTT ATGGTACTCG CAAGCTGGGA CACCTGTAGT GAAGGTTACC 181 ACAAATTATT ATGCTGAAGG GCGCACTTTC Predicted gene structure (within gDNA segment 94369 to 92768): Exon 1 93769 93737 ( 33 n); cDNA 1 33 ( 33 n); score: 1.000 Intron 1 93736 93638 ( 99 n); Pd: 0.898 (s: 0), Pa: 0.934 (s: 1.00) Exon 2 93637 93528 ( 110 n); cDNA 34 143 ( 110 n); score: 1.000 Intron 2 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 0.98) Exon 3 93444 93378 ( 67 n); cDNA 144 210 ( 67 n); score: 0.985 MATCH C08SLe0084H03.1- SGN-E290100+ 0.994 210 1.000 C PGS_C08SLe0084H03.1-_SGN-E290100+ (93769 93737,93637 93528,93444 93378) Alignment (genomic DNA sequence = upper lines): AAAACCTTGT TAGGTAGCCA AGGATTTAGA AAAGTAAGAA AACGATAATC TCTTGCCTAT 93710 |||||||||| |||||||||| |||||||||| ||| AAAACCTTGT TAGGTAGCCA AGGATTTAGA AAA....... .......... .......... 33 TTTTGTTGTA CTGACAAATG ATTTCCGAAC TTCGGAGTCT CAAAAATCTG ATATACCCCC 93650 .......... .......... .......... .......... .......... .......... 33 TTTCCCCTTC AGGGCACAGA TTTATATTTT GAGAGGCATG ATGGTCAAGC AGTAACATGT 93590 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGCACAGA TTTATATTTT GAGAGGCATG ATGGTCAAGC AGTAACATGT 81 GAAGACTTTT TTGCTGCCAT GCGAGATGCC AACAATGCAG ATTTTGCTAA TTTCTTGTTA 93530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACTTTT TTGCTGCCAT GCGAGATGCC AACAATGCAG ATTTTGCTAA TTTCTTGTTA 141 TGGTAGGCGA CTCTTCCTTC CCGCCAGTCG AACCAGTTTT CGTGATTCCC TTCAAAGTTA 93470 || TG........ .......... .......... .......... .......... .......... 143 AGCTTTTAAT GAAACATAAT TGCAGGTACT CGCAAGCTGG GACACCTGTA GTGAAGGTTA 93410 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTACT CGCAAGCTGG GACACCTGTA GTGAAGGTTA 178 CCACAAATTA TAATGCTGAA GGGCGCACTT TC 93378 |||||||||| | |||||||| |||||||||| || CCACAAATTA TTATGCTGAA GGGCGCACTT TC 210 hqPGS_C08SLe0084H03.1-_SGN-E290100+ (93769 93737,93637 93528,93444 93378) ******************************************************************************** EST sequence 212 +strand 372 n (File: SGN-E200693+) 1 CGTCCTGTGA AAAGAATTGC TGATGTCTCA AAGCTTCGAA TGTATCAGTT CCCGCAGGAT 61 GCTGGTCCAA TGGCTCATCC TGTAAGGCCT CACTCTTATA TAAAGATGGA TAACTTCTAC 121 ACAGTTACGG TATATGAGAA GGGAGCTGAA GTGGTCAGGA TGTACAAAAC CTTGTTAGGT 181 AGCCAAGGAT TTAGAAAAGG CACAGATTTA TATTTTGAGA GGCATGATGG TCAAGCAGTA 241 ACATGTGAAG ACTTTTTTGC TGCCATGCGA GATGCCAACA ATGCAGATTT TGCTAATTTC 301 TTGTTATGGT ACTCGCAAGC TGGGACACCT GTAGTGAAGG TTACCACAAA TTATAATGCT 361 GAAGGGCGCA CT Predicted gene structure (within gDNA segment 95185 to 92771): Exon 1 94585 94529 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 94528 94387 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 94386 94339 ( 48 n); cDNA 58 105 ( 48 n); score: 1.000 Intron 2 94338 94237 ( 102 n); Pd: 0.972 (s: 1.00), Pa: 0.998 (s: 0) Exon 3 94236 94218 ( 19 n); cDNA 106 124 ( 19 n); score: 1.000 Intron 3 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 4 94079 94075 ( 5 n); cDNA 125 129 ( 5 n); score: 1.000 Intron 4 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 5 93960 93949 ( 12 n); cDNA 130 141 ( 12 n); score: 1.000 Intron 5 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 6 93793 93737 ( 57 n); cDNA 142 198 ( 57 n); score: 1.000 Intron 6 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 7 93637 93528 ( 110 n); cDNA 199 308 ( 110 n); score: 1.000 Intron 7 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 8 93444 93381 ( 64 n); cDNA 309 372 ( 64 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E200693+ 1.000 372 1.000 C PGS_C08SLe0084H03.1-_SGN-E200693+ (94585 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93381) Alignment (genomic DNA sequence = upper lines): CGTCCTGTGA AAAGAATTGC TGATGTCTCA AAGCTTCGAA TGTATCAGTT CCCGCAGGTT 94526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGTCCTGTGA AAAGAATTGC TGATGTCTCA AAGCTTCGAA TGTATCAGTT CCCGCAG... 57 CAAAGACTTC TTTAAGTTCT TTCATTACAA TATTCCTACT TCTTATATAT ACATGGATTG 94466 .......... .......... .......... .......... .......... .......... 57 CCAAATCAAA ATGCTCCACA ATGAGCTACT GAATTGTGGA TAACTAGTTA AATTTGCTAC 94406 .......... .......... .......... .......... .......... .......... 57 TATTATCCTC ATTTTTTAGG ATGCTGGTCC AATGGCTCAT CCTGTAAGGC CTCACTCTTA 94346 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G ATGCTGGTCC AATGGCTCAT CCTGTAAGGC CTCACTCTTA 98 TATAAAGGTA GATAATCTCT TTGAATAGGA ATGATCCTTG TTTAGCAAAC GCTGGCCCCA 94286 ||||||| TATAAAG... .......... .......... .......... .......... .......... 105 CCTTCTTGGA AAATTTTCTC ATTCTTCTTC TCTCTTTTTA TGTTGACAGA TGGATAACTT 94226 | |||||||||| .......... .......... .......... .......... .........A TGGATAACTT 116 CTACACAGGC AAGTTTGAGT TAACTGTCAT TGAAGAGGAG TTTTAATTTC TTTTGAGCCC 94166 |||||||| CTACACAG.. .......... .......... .......... .......... .......... 124 AAATTGGATG ATTATTTTTG TTACTGATTG TTACTGATGT TTGGTTGTGA CGGCTGGTCT 94106 .......... .......... .......... .......... .......... .......... 124 GGCTTTGAAT ATTCATGAAC ATGCAGTTAC GGTAAGATCC TGATAATTCT GTTTTATCAT 94046 |||| | .......... .......... ......TTAC G......... .......... .......... 129 TGTTCTAACT TTTATGTCCT GGTATCTTTG GTTTCCCAAG GTATTTATTA ACTATTGTTC 93986 .......... .......... .......... .......... .......... .......... 129 CTTTGTTCCA TTTTCTCTTT TGCAGGTATA TGAGAAGGTA ATGCACTTCC TCTCTTGCCC 93926 ||||| ||||||| .......... .......... .....GTATA TGAGAAG... .......... .......... 141 CTCCTCATGT GGCATTTTGT GCCTCTCTTT TTTTCTCCCT TTCCGATGCC ACCAGATCCA 93866 .......... .......... .......... .......... .......... .......... 141 AGACCTTATG TGTGCTTGAA ACCATTTTGT GTTTTGACTC ACCATTGGTT TAATCACTGT 93806 .......... .......... .......... .......... .......... .......... 141 TTCTGTTATC AGGGAGCTGA AGTGGTCAGG ATGTACAAAA CCTTGTTAGG TAGCCAAGGA 93746 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGAGCTGA AGTGGTCAGG ATGTACAAAA CCTTGTTAGG TAGCCAAGGA 189 TTTAGAAAAG TAAGAAAACG ATAATCTCTT GCCTATTTTT GTTGTACTGA CAAATGATTT 93686 ||||||||| TTTAGAAAA. .......... .......... .......... .......... .......... 198 CCGAACTTCG GAGTCTCAAA AATCTGATAT ACCCCCTTTC CCCTTCAGGG CACAGATTTA 93626 || |||||||||| .......... .......... .......... .......... ........GG CACAGATTTA 210 TATTTTGAGA GGCATGATGG TCAAGCAGTA ACATGTGAAG ACTTTTTTGC TGCCATGCGA 93566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTGAGA GGCATGATGG TCAAGCAGTA ACATGTGAAG ACTTTTTTGC TGCCATGCGA 270 GATGCCAACA ATGCAGATTT TGCTAATTTC TTGTTATGGT AGGCGACTCT TCCTTCCCGC 93506 |||||||||| |||||||||| |||||||||| |||||||| GATGCCAACA ATGCAGATTT TGCTAATTTC TTGTTATG.. .......... .......... 308 CAGTCGAACC AGTTTTCGTG ATTCCCTTCA AAGTTAAGCT TTTAATGAAA CATAATTGCA 93446 .......... .......... .......... .......... .......... .......... 308 GGTACTCGCA AGCTGGGACA CCTGTAGTGA AGGTTACCAC AAATTATAAT GCTGAAGGGC 93386 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTACTCGCA AGCTGGGACA CCTGTAGTGA AGGTTACCAC AAATTATAAT GCTGAAGGGC 367 GCACT 93381 ||||| GCACT 372 hqPGS_C08SLe0084H03.1-_SGN-E200693+ (94585 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93381) ******************************************************************************** EST sequence 191 +strand 423 n (File: SGN-E203828+) 1 AACAGAGTTA CATGTCGTGA CTGGTTCCAG CTCAGTTTAA AGGAAGGACT TACTGTTTTC 61 CGTGATCAGG AGTTTTCGTC TGATTTGGGC AGCCGTCCTG TGAAAAGAAT TGCTGATGTC 121 TCAAAGCTTC GAATGTATCA GTTCCCGCAG GATGCTGGTC CAATGGCTCA TCCTGTAAGG 181 CCTCACTCTT ATATAAAGAT GGATAACTTC TACACAGTTA CGGTATATGA GAAGGGAGCT 241 GAAGTGGTCA GGATGTACAA AACCTTGTTA GGTAGCCAAG GATTTAGAAA AGGCACAGAT 301 TTATATTTTG AGAGGCATGA TGGTCAAGCA GTAACATGTG AAGACTTTTT TGCTGCCATG 361 CGAGATGCCA ACAATGCAGA TTTTGCTAAT TTCTTGTTAT GGTACTCGCA AGCTGGGACA 421 CCT Predicted gene structure (within gDNA segment 95380 to 92725): Exon 1 95117 95113 ( 5 n); cDNA 1 5 ( 5 n); score: 1.000 Intron 1 95112 94758 ( 355 n); Pd: 0.994 (s: 0), Pa: 0.101 (s: 1.00) Exon 2 94757 94694 ( 64 n); cDNA 6 69 ( 64 n); score: 1.000 Intron 2 94693 94610 ( 84 n); Pd: 0.334 (s: 1.00), Pa: 0.874 (s: 1.00) Exon 3 94609 94529 ( 81 n); cDNA 70 150 ( 81 n); score: 1.000 Intron 3 94528 94387 ( 142 n); Pd: 0.996 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 94386 94339 ( 48 n); cDNA 151 198 ( 48 n); score: 1.000 Intron 4 94338 94237 ( 102 n); Pd: 0.972 (s: 1.00), Pa: 0.998 (s: 0) Exon 5 94236 94218 ( 19 n); cDNA 199 217 ( 19 n); score: 1.000 Intron 5 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 6 94079 94075 ( 5 n); cDNA 218 222 ( 5 n); score: 1.000 Intron 6 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 7 93960 93949 ( 12 n); cDNA 223 234 ( 12 n); score: 1.000 Intron 7 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 1.00) Exon 8 93793 93737 ( 57 n); cDNA 235 291 ( 57 n); score: 1.000 Intron 8 93736 93638 ( 99 n); Pd: 0.898 (s: 1.00), Pa: 0.934 (s: 1.00) Exon 9 93637 93528 ( 110 n); cDNA 292 401 ( 110 n); score: 1.000 Intron 9 93527 93445 ( 83 n); Pd: 0.781 (s: 1.00), Pa: 0.982 (s: 0) Exon 10 93444 93423 ( 22 n); cDNA 402 423 ( 22 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E203828+ 1.000 423 1.000 C PGS_C08SLe0084H03.1-_SGN-E203828+ (95117 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93423) Alignment (genomic DNA sequence = upper lines): AACAGGTTTG TCCATAACCC AATCTTTCCT TCTCACAGAA AATAAAAAAG CTGGTTAATA 95058 ||||| AACAG..... .......... .......... .......... .......... .......... 5 TAGTAGCTAT TTATTCCATT ATATTACTAT TTGTATCTTC TAGGTCTTTT GGTGTATAAT 94998 .......... .......... .......... .......... .......... .......... 5 GGACAATTAT ATACTCAAAT TCCTGAAAAC ACATCAGGAG TTATTAGCCT TTTCTTTAAA 94938 .......... .......... .......... .......... .......... .......... 5 AAATTATTGT AGCTCTCTAT TGTTGCTGCT TCTGATGAGA AATAAAGTTG CATATGTTAA 94878 .......... .......... .......... .......... .......... .......... 5 TTTCAAAAAT ACTTGAAGTT TAAACTTATT TCTTGATACA AGGCAGTGTA CTTGTTTGCT 94818 .......... .......... .......... .......... .......... .......... 5 GTGTACTTTG AGAGTATTCT CGTTGTTAGA AACTTCTATT AACTATTGAG CTCGATGCAG 94758 .......... .......... .......... .......... .......... .......... 5 AGTTACATGT CGTGACTGGT TCCAGCTCAG TTTAAAGGAA GGACTTACTG TTTTCCGTGA 94698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACATGT CGTGACTGGT TCCAGCTCAG TTTAAAGGAA GGACTTACTG TTTTCCGTGA 65 TCAGGTTGGA TTTATTCCTG TAGATGATGG GTATACAAAC AATTTTCTGG TAGCCTTAGC 94638 |||| TCAG...... .......... .......... .......... .......... .......... 69 TAATAAGGTT CTTGAATGAT TCATGCAGGA GTTTTCGTCT GATTTGGGCA GCCGTCCTGT 94578 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA GTTTTCGTCT GATTTGGGCA GCCGTCCTGT 101 GAAAAGAATT GCTGATGTCT CAAAGCTTCG AATGTATCAG TTCCCGCAGG TTCAAAGACT 94518 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAAAGAATT GCTGATGTCT CAAAGCTTCG AATGTATCAG TTCCCGCAG. .......... 150 TCTTTAAGTT CTTTCATTAC AATATTCCTA CTTCTTATAT ATACATGGAT TGCCAAATCA 94458 .......... .......... .......... .......... .......... .......... 150 AAATGCTCCA CAATGAGCTA CTGAATTGTG GATAACTAGT TAAATTTGCT ACTATTATCC 94398 .......... .......... .......... .......... .......... .......... 150 TCATTTTTTA GGATGCTGGT CCAATGGCTC ATCCTGTAAG GCCTCACTCT TATATAAAGG 94338 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| .......... .GATGCTGGT CCAATGGCTC ATCCTGTAAG GCCTCACTCT TATATAAAG. 198 TAGATAATCT CTTTGAATAG GAATGATCCT TGTTTAGCAA ACGCTGGCCC CACCTTCTTG 94278 .......... .......... .......... .......... .......... .......... 198 GAAAATTTTC TCATTCTTCT TCTCTCTTTT TATGTTGACA GATGGATAAC TTCTACACAG 94218 ||||||||| |||||||||| .......... .......... .......... .......... .ATGGATAAC TTCTACACAG 217 GCAAGTTTGA GTTAACTGTC ATTGAAGAGG AGTTTTAATT TCTTTTGAGC CCAAATTGGA 94158 .......... .......... .......... .......... .......... .......... 217 TGATTATTTT TGTTACTGAT TGTTACTGAT GTTTGGTTGT GACGGCTGGT CTGGCTTTGA 94098 .......... .......... .......... .......... .......... .......... 217 ATATTCATGA ACATGCAGTT ACGGTAAGAT CCTGATAATT CTGTTTTATC ATTGTTCTAA 94038 || ||| .......... ........TT ACG....... .......... .......... .......... 222 CTTTTATGTC CTGGTATCTT TGGTTTCCCA AGGTATTTAT TAACTATTGT TCCTTTGTTC 93978 .......... .......... .......... .......... .......... .......... 222 CATTTTCTCT TTTGCAGGTA TATGAGAAGG TAATGCACTT CCTCTCTTGC CCCTCCTCAT 93918 ||| ||||||||| .......... .......GTA TATGAGAAG. .......... .......... .......... 234 GTGGCATTTT GTGCCTCTCT TTTTTTCTCC CTTTCCGATG CCACCAGATC CAAGACCTTA 93858 .......... .......... .......... .......... .......... .......... 234 TGTGTGCTTG AAACCATTTT GTGTTTTGAC TCACCATTGG TTTAATCACT GTTTCTGTTA 93798 .......... .......... .......... .......... .......... .......... 234 TCAGGGAGCT GAAGTGGTCA GGATGTACAA AACCTTGTTA GGTAGCCAAG GATTTAGAAA 93738 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GGAGCT GAAGTGGTCA GGATGTACAA AACCTTGTTA GGTAGCCAAG GATTTAGAAA 290 AGTAAGAAAA CGATAATCTC TTGCCTATTT TTGTTGTACT GACAAATGAT TTCCGAACTT 93678 | A......... .......... .......... .......... .......... .......... 291 CGGAGTCTCA AAAATCTGAT ATACCCCCTT TCCCCTTCAG GGCACAGATT TATATTTTGA 93618 |||||||||| |||||||||| .......... .......... .......... .......... GGCACAGATT TATATTTTGA 311 GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT GCTGCCATGC GAGATGCCAA 93558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCATGAT GGTCAAGCAG TAACATGTGA AGACTTTTTT GCTGCCATGC GAGATGCCAA 371 CAATGCAGAT TTTGCTAATT TCTTGTTATG GTAGGCGACT CTTCCTTCCC GCCAGTCGAA 93498 |||||||||| |||||||||| |||||||||| CAATGCAGAT TTTGCTAATT TCTTGTTATG .......... .......... .......... 401 CCAGTTTTCG TGATTCCCTT CAAAGTTAAG CTTTTAATGA AACATAATTG CAGGTACTCG 93438 ||||||| .......... .......... .......... .......... .......... ...GTACTCG 408 CAAGCTGGGA CACCT 93423 |||||||||| ||||| CAAGCTGGGA CACCT 423 hqPGS_C08SLe0084H03.1-_SGN-E203828+ (94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93423) ******************************************************************************** EST sequence 198 +strand 391 n (File: SGN-E252041+) 1 GGACATGAGT ACTTTCACAA TTGGACAGGC AACAGAGTTA CATGGGGGGA CTGGTTGCAG 61 CTCAGTTTAA AGGAAGGACT TACTGTTTTC CGTGATCAGG AGTGTTCGTC TGATTTGGGC 121 AGCCGTCCTG TGAAAAGAAT TGCTGATGTC TCAAAGCTTC TAATGTATCA GTTCCCGCAG 181 GATGCTGGTG CAATGGCTCA TCCTGTAAGG CCTCACTCTT ATATAAAGAT GGATAACTTC 241 TACACAGTTA CGGTATATGA GAAGGGAGCT GAAGTGGTCA TGATGTACAA AACCTTGTTA 301 GGTAGCCAAG GATTTAGAAA AGGCACAAAT TTATATTTTG AGAGGCATGA TGGTCCAAAG 361 CCCCAGTAAC ATGTGAAGAC TTTTTTGCTG C Predicted gene structure (within gDNA segment 95905 to 92963): Exon 1 95248 95240 ( 9 n); cDNA 1 9 ( 9 n); score: 1.000 Intron 1 95239 95139 ( 101 n); Pd: 0.996 (s: 0), Pa: 0.976 (s: 0) Exon 2 95138 95113 ( 26 n); cDNA 10 35 ( 26 n); score: 0.962 Intron 2 95112 94758 ( 355 n); Pd: 0.994 (s: 0), Pa: 0.101 (s: 0.92) Exon 3 94757 94694 ( 64 n); cDNA 36 99 ( 64 n); score: 0.938 Intron 3 94693 94610 ( 84 n); Pd: 0.334 (s: 0.98), Pa: 0.874 (s: 0.98) Exon 4 94609 94529 ( 81 n); cDNA 100 180 ( 81 n); score: 0.975 Intron 4 94528 94387 ( 142 n); Pd: 0.996 (s: 0.98), Pa: 0.992 (s: 0.98) Exon 5 94386 94339 ( 48 n); cDNA 181 228 ( 48 n); score: 0.979 Intron 5 94338 94237 ( 102 n); Pd: 0.972 (s: 0.98), Pa: 0.998 (s: 0) Exon 6 94236 94218 ( 19 n); cDNA 229 247 ( 19 n); score: 1.000 Intron 6 94217 94080 ( 138 n); Pd: 0.866 (s: 0), Pa: 0.000 (s: 0) Exon 7 94079 94075 ( 5 n); cDNA 248 252 ( 5 n); score: 1.000 Intron 7 94074 93961 ( 114 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 0) Exon 8 93960 93949 ( 12 n); cDNA 253 264 ( 12 n); score: 1.000 Intron 8 93948 93794 ( 155 n); Pd: 0.960 (s: 0), Pa: 0.993 (s: 0.98) Exon 9 93793 93737 ( 57 n); cDNA 265 321 ( 57 n); score: 0.982 Intron 9 93736 93638 ( 99 n); Pd: 0.898 (s: 0.98), Pa: 0.934 (s: 0.70) Exon 10 93637 93573 ( 65 n); cDNA 322 391 ( 70 n); score: 0.792 MATCH C08SLe0084H03.1- SGN-E252041+ 0.923 386 0.987 C PGS_C08SLe0084H03.1-_SGN-E252041+ (95248 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93573) Alignment (genomic DNA sequence = upper lines): GGACATGAGG TGTGTGATAT GTTTTCATAA GCTATTGAAA TTCATGAACT TTATTTTGTT 95189 ||||||||| GGACATGAG. .......... .......... .......... .......... .......... 9 TACTGATTCT TGAATGCTGA GCAAATCACC ATTTCTTGTC CGTGTTGCAG TACTTCCACA 95129 ||||| |||| .......... .......... .......... .......... .......... TACTTTCACA 19 ATTGGACAGG CAACAGGTTT GTCCATAACC CAATCTTTCC TTCTCACAGA AAATAAAAAA 95069 |||||||||| |||||| ATTGGACAGG CAACAG.... .......... .......... .......... .......... 35 GCTGGTTAAT ATAGTAGCTA TTTATTCCAT TATATTACTA TTTGTATCTT CTAGGTCTTT 95009 .......... .......... .......... .......... .......... .......... 35 TGGTGTATAA TGGACAATTA TATACTCAAA TTCCTGAAAA CACATCAGGA GTTATTAGCC 94949 .......... .......... .......... .......... .......... .......... 35 TTTTCTTTAA AAAATTATTG TAGCTCTCTA TTGTTGCTGC TTCTGATGAG AAATAAAGTT 94889 .......... .......... .......... .......... .......... .......... 35 GCATATGTTA ATTTCAAAAA TACTTGAAGT TTAAACTTAT TTCTTGATAC AAGGCAGTGT 94829 .......... .......... .......... .......... .......... .......... 35 ACTTGTTTGC TGTGTACTTT GAGAGTATTC TCGTTGTTAG AAACTTCTAT TAACTATTGA 94769 .......... .......... .......... .......... .......... .......... 35 GCTCGATGCA GAGTTACATG TCGTGACTGG TTCCAGCTCA GTTTAAAGGA AGGACTTACT 94709 ||||||||| | |||||| || ||||||| |||||||||| |||||||||| .......... .AGTTACATG GGGGGACTGG TTGCAGCTCA GTTTAAAGGA AGGACTTACT 84 GTTTTCCGTG ATCAGGTTGG ATTTATTCCT GTAGATGATG GGTATACAAA CAATTTTCTG 94649 |||||||||| ||||| GTTTTCCGTG ATCAG..... .......... .......... .......... .......... 99 GTAGCCTTAG CTAATAAGGT TCTTGAATGA TTCATGCAGG AGTTTTCGTC TGATTTGGGC 94589 | ||| |||||| |||||||||| .......... .......... .......... .........G AGTGTTCGTC TGATTTGGGC 120 AGCCGTCCTG TGAAAAGAAT TGCTGATGTC TCAAAGCTTC GAATGTATCA GTTCCCGCAG 94529 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AGCCGTCCTG TGAAAAGAAT TGCTGATGTC TCAAAGCTTC TAATGTATCA GTTCCCGCAG 180 GTTCAAAGAC TTCTTTAAGT TCTTTCATTA CAATATTCCT ACTTCTTATA TATACATGGA 94469 .......... .......... .......... .......... .......... .......... 180 TTGCCAAATC AAAATGCTCC ACAATGAGCT ACTGAATTGT GGATAACTAG TTAAATTTGC 94409 .......... .......... .......... .......... .......... .......... 180 TACTATTATC CTCATTTTTT AGGATGCTGG TCCAATGGCT CATCCTGTAA GGCCTCACTC 94349 |||||||| | |||||||| |||||||||| |||||||||| .......... .......... ..GATGCTGG TGCAATGGCT CATCCTGTAA GGCCTCACTC 218 TTATATAAAG GTAGATAATC TCTTTGAATA GGAATGATCC TTGTTTAGCA AACGCTGGCC 94289 |||||||||| TTATATAAAG .......... .......... .......... .......... .......... 228 CCACCTTCTT GGAAAATTTT CTCATTCTTC TTCTCTCTTT TTATGTTGAC AGATGGATAA 94229 |||||||| .......... .......... .......... .......... .......... ..ATGGATAA 236 CTTCTACACA GGCAAGTTTG AGTTAACTGT CATTGAAGAG GAGTTTTAAT TTCTTTTGAG 94169 |||||||||| | CTTCTACACA G......... .......... .......... .......... .......... 247 CCCAAATTGG ATGATTATTT TTGTTACTGA TTGTTACTGA TGTTTGGTTG TGACGGCTGG 94109 .......... .......... .......... .......... .......... .......... 247 TCTGGCTTTG AATATTCATG AACATGCAGT TACGGTAAGA TCCTGATAAT TCTGTTTTAT 94049 | |||| .......... .......... .........T TACG...... .......... .......... 252 CATTGTTCTA ACTTTTATGT CCTGGTATCT TTGGTTTCCC AAGGTATTTA TTAACTATTG 93989 .......... .......... .......... .......... .......... .......... 252 TTCCTTTGTT CCATTTTCTC TTTTGCAGGT ATATGAGAAG GTAATGCACT TCCTCTCTTG 93929 || |||||||||| .......... .......... ........GT ATATGAGAAG .......... .......... 264 CCCCTCCTCA TGTGGCATTT TGTGCCTCTC TTTTTTTCTC CCTTTCCGAT GCCACCAGAT 93869 .......... .......... .......... .......... .......... .......... 264 CCAAGACCTT ATGTGTGCTT GAAACCATTT TGTGTTTTGA CTCACCATTG GTTTAATCAC 93809 .......... .......... .......... .......... .......... .......... 264 TGTTTCTGTT ATCAGGGAGC TGAAGTGGTC AGGATGTACA AAACCTTGTT AGGTAGCCAA 93749 ||||| |||||||||| | |||||||| |||||||||| |||||||||| .......... .....GGAGC TGAAGTGGTC ATGATGTACA AAACCTTGTT AGGTAGCCAA 309 GGATTTAGAA AAGTAAGAAA ACGATAATCT CTTGCCTATT TTTGTTGTAC TGACAAATGA 93689 |||||||||| || GGATTTAGAA AA........ .......... .......... .......... .......... 321 TTTCCGAACT TCGGAGTCTC AAAAATCTGA TATACCCCCT TTCCCCTTCA GGGCACAGAT 93629 |||||| || .......... .......... .......... .......... .......... .GGCACAAAT 330 TTATATTTTG AGAGGCATGA TGGT-C-AAG ---CAGTAAC ATGTGAAGAC TTTTTTGCTG 93574 |||||||||| |||||||||| |||| | ||| ||||||| |||||||||| |||||||||| TTATATTTTG AGAGGCATGA TGGTCCAAAG CCCCAGTAAC ATGTGAAGAC TTTTTTGCTG 390 C 93573 | C 391 hqPGS_C08SLe0084H03.1-_SGN-E252041+ (95248 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93573) ******************************************************************************** EST sequence 216 +strand 169 n (File: SGN-E335076+) 1 GACTTACTGT TTTCCGTGAT CAGGAGTTTT CGTCTGATTT GGGCAGCCGT CCTGTGAAAA 61 GAATTGCTGA TGTCTCAAAG CTTCGAATGT ATCAGTTCCC GCATGATGCT GGTCCAATGG 121 CTCATCCTGT AAGGCCTCAC TCTTATATAA AGATGGATAA CTTCTACAC Predicted gene structure (within gDNA segment 95412 to 93559): Exon 1 94716 94694 ( 23 n); cDNA 1 23 ( 23 n); score: 1.000 Intron 1 94693 94610 ( 84 n); Pd: 0.334 (s: 0), Pa: 0.874 (s: 1.00) Exon 2 94609 94529 ( 81 n); cDNA 24 104 ( 81 n); score: 0.988 Intron 2 94528 94387 ( 142 n); Pd: 0.996 (s: 0.98), Pa: 0.992 (s: 1.00) Exon 3 94386 94339 ( 48 n); cDNA 105 152 ( 48 n); score: 1.000 Intron 3 94338 94237 ( 102 n); Pd: 0.972 (s: 1.00), Pa: 0.998 (s: 0) Exon 4 94236 94220 ( 17 n); cDNA 153 169 ( 17 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E335076+ 0.988 169 1.000 C PGS_C08SLe0084H03.1-_SGN-E335076+ (94716 94694,94609 94529,94386 94339,94236 94220) Alignment (genomic DNA sequence = upper lines): GACTTACTGT TTTCCGTGAT CAGGTTGGAT TTATTCCTGT AGATGATGGG TATACAAACA 94657 |||||||||| |||||||||| ||| GACTTACTGT TTTCCGTGAT CAG....... .......... .......... .......... 23 ATTTTCTGGT AGCCTTAGCT AATAAGGTTC TTGAATGATT CATGCAGGAG TTTTCGTCTG 94597 ||| |||||||||| .......... .......... .......... .......... .......GAG TTTTCGTCTG 36 ATTTGGGCAG CCGTCCTGTG AAAAGAATTG CTGATGTCTC AAAGCTTCGA ATGTATCAGT 94537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGCAG CCGTCCTGTG AAAAGAATTG CTGATGTCTC AAAGCTTCGA ATGTATCAGT 96 TCCCGCAGGT TCAAAGACTT CTTTAAGTTC TTTCATTACA ATATTCCTAC TTCTTATATA 94477 ||||||| TCCCGCAT.. .......... .......... .......... .......... .......... 104 TACATGGATT GCCAAATCAA AATGCTCCAC AATGAGCTAC TGAATTGTGG ATAACTAGTT 94417 .......... .......... .......... .......... .......... .......... 104 AAATTTGCTA CTATTATCCT CATTTTTTAG GATGCTGGTC CAATGGCTCA TCCTGTAAGG 94357 |||||||||| |||||||||| |||||||||| .......... .......... .......... GATGCTGGTC CAATGGCTCA TCCTGTAAGG 134 CCTCACTCTT ATATAAAGGT AGATAATCTC TTTGAATAGG AATGATCCTT GTTTAGCAAA 94297 |||||||||| |||||||| CCTCACTCTT ATATAAAG.. .......... .......... .......... .......... 152 CGCTGGCCCC ACCTTCTTGG AAAATTTTCT CATTCTTCTT CTCTCTTTTT ATGTTGACAG 94237 .......... .......... .......... .......... .......... .......... 152 ATGGATAACT TCTACAC 94220 |||||||||| ||||||| ATGGATAACT TCTACAC 169 hqPGS_C08SLe0084H03.1-_SGN-E335076+ (94716 94694,94609 94529,94386 94339,94236 94220) ******************************************************************************** EST sequence 261 +strand 560 n (File: SGN-E249739+) 1 TTCCGTAAGA TTACGTTCTA TCAAGATCGC CCTGACATTA TGGCAAAATA CACTTGTCGC 61 ATAGAGGCAG ACAAATCCTT GTATCCTGTA TTGTTGTCAA ATGGAAACCT TATAGAGCAA 121 GGGGATCTGG AGGGAGGAAA GCATTATACT CTTTGGGAGG ATCCTTTCAA GAAGCCCAGT 181 TATCTTTTTG CATTGGTTGC TGGTCAGTTG GTGAGCAGAG ATGACACATT TACAACCTGT 241 TCAAGCCGTA AGGTCTCCCT TAGAATCTGG ACCCCTGCAC AAGATCTGCC CAAGACAGAA 301 CATGCCATGT ATTCTCTCAA GGCAGCTATG AAGTGGGATG AAGATGTTTT CGGGCGGGAG 361 TATGACCTGG ATCTTTTTAA TATTGTTGCT GTTCCAGATT TTAACATGGG AGCAATGGAA 421 AACAAGAGCT TGAATATATT CAATTCCAAG CTTGTCCTGG CATCCCCAGA AACTGCAACA 481 GATGCTGATT ATGCGGCTAT ATTGGGTGTG ATTGGACATG AGTACTTCCA CAATTGGACA 541 GGCAACAGAG TTACATGTCG Predicted gene structure (within gDNA segment 96983 to 94250): Exon 1 96251 96228 ( 24 n); cDNA 1 24 ( 24 n); score: 0.958 Intron 1 96227 96144 ( 84 n); Pd: 0.999 (s: 0), Pa: 0.983 (s: 1.00) Exon 2 96143 96036 ( 108 n); cDNA 25 132 ( 108 n); score: 1.000 Intron 2 96035 95939 ( 97 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 95938 95726 ( 213 n); cDNA 133 345 ( 213 n); score: 0.995 Intron 3 95725 95634 ( 92 n); Pd: 0.987 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 95633 95572 ( 62 n); cDNA 346 407 ( 62 n); score: 1.000 Intron 4 95571 95445 ( 127 n); Pd: 0.994 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 95444 95417 ( 28 n); cDNA 408 435 ( 28 n); score: 1.000 Intron 5 95416 95327 ( 90 n); Pd: 0.310 (s: 0), Pa: 1.000 (s: 1.00) Exon 6 95326 95240 ( 87 n); cDNA 436 522 ( 87 n); score: 1.000 Intron 6 95239 95139 ( 101 n); Pd: 0.996 (s: 1.00), Pa: 0.976 (s: 0) Exon 7 95138 95113 ( 26 n); cDNA 523 548 ( 26 n); score: 1.000 Intron 7 95112 94758 ( 355 n); Pd: 0.994 (s: 0), Pa: 0.101 (s: 0) Exon 8 94757 94746 ( 12 n); cDNA 549 560 ( 12 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E249739+ 0.998 560 1.000 C PGS_C08SLe0084H03.1-_SGN-E249739+ (96251 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95240,95138 95113,94757 94746) Alignment (genomic DNA sequence = upper lines): TTCCGTAAGA TTACGTTCTA TCAGGTATGC CTTATTTTTA TTGTTTGTCC TCTAGGATAT 96192 |||||||||| |||||||||| ||| TTCCGTAAGA TTACGTTCTA TCAA...... .......... .......... .......... 24 TATCGTTTTT TTTAAATGCT TGGTAATGGC TGAGATTTTC TCCATTAGGA TCGCCCTGAC 96132 || |||||||||| .......... .......... .......... .......... ........GA TCGCCCTGAC 36 ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT CCTTGTATCC TGTATTGTTG 96072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT CCTTGTATCC TGTATTGTTG 96 TCAAATGGAA ACCTTATAGA GCAAGGGGAT CTGGAGGTAC ACTTGGATTT CCTGTACTAT 96012 |||||||||| |||||||||| |||||||||| |||||| TCAAATGGAA ACCTTATAGA GCAAGGGGAT CTGGAG.... .......... .......... 132 TTGTTGAAAG TTGTTTTCTA GTAACCCTTA TGCAACTAAT CAAATTATTC TCTTCTTTTT 95952 .......... .......... .......... .......... .......... .......... 132 TTGTTTTTTG CAGGGAGGAA AGCATTATAC TCTTTGGGAG GATCCTTTCA AGAAGCCCAG 95892 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGAGGAA AGCATTATAC TCTTTGGGAG GATCCTTTCA AGAAGCCCAG 179 TTATCTTTTT GCATTGGTTG CTGGTCAGTT GGTGAGCAGA GATGACACAT TTACAACCTG 95832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCTTTTT GCATTGGTTG CTGGTCAGTT GGTGAGCAGA GATGACACAT TTACAACCTG 239 TTCAGGCCGT AAGGTCTCCC TTAGAATCTG GACCCCTGCA CAAGATCTGC CCAAGACAGA 95772 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGCCGT AAGGTCTCCC TTAGAATCTG GACCCCTGCA CAAGATCTGC CCAAGACAGA 299 ACATGCCATG TATTCTCTCA AGGCAGCTAT GAAGTGGGAT GAAGATGTGA GATTTTAGGT 95712 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACATGCCATG TATTCTCTCA AGGCAGCTAT GAAGTGGGAT GAAGAT.... .......... 345 TCTTTGATGT ACATCAAGTT AATTATGTTT GTTGTCTTGT GGTCTTATGA CAATTTCTTT 95652 .......... .......... .......... .......... .......... .......... 345 GTCAAAATTT TCCAACAGGT TTTCGGGCGG GAGTATGACC TGGATCTTTT TAATATTGTT 95592 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT TTTCGGGCGG GAGTATGACC TGGATCTTTT TAATATTGTT 387 GCTGTTCCAG ATTTTAACAT GTTAGTTCTC TGGTTTCTTC ACTTTGTCAT TATTTATTCT 95532 |||||||||| |||||||||| GCTGTTCCAG ATTTTAACAT .......... .......... .......... .......... 407 TGACATTTTT CTTTTCTTCT CTTTGTTTAT CCACTCTCCT AATTTTTTCT GTGGATAATA 95472 .......... .......... .......... .......... .......... .......... 407 ACTGTTTTTT TTTAATTTCA TTTCCAGGGG AGCAATGGAA AACAAGAGCT TGAATGTATG 95412 ||| |||||||||| |||||||||| ||||| .......... .......... .......GGG AGCAATGGAA AACAAGAGCT TGAAT..... 435 AGATTTGAGA TGTTATTGCA TTGTATTGCT CTGTTTATGA CTTTTTCTTA ATTATCACCT 95352 .......... .......... .......... .......... .......... .......... 435 AATTATTTGA CTTTGTTTTC AACAGATATT CAATTCCAAG CTTGTCCTGG CATCCCCAGA 95292 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATATT CAATTCCAAG CTTGTCCTGG CATCCCCAGA 470 AACTGCAACA GATGCTGATT ATGCGGCTAT ATTGGGTGTG ATTGGACATG AGGTGTGTGA 95232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AACTGCAACA GATGCTGATT ATGCGGCTAT ATTGGGTGTG ATTGGACATG AG........ 522 TATGTTTTCA TAAGCTATTG AAATTCATGA ACTTTATTTT GTTTACTGAT TCTTGAATGC 95172 .......... .......... .......... .......... .......... .......... 522 TGAGCAAATC ACCATTTCTT GTCCGTGTTG CAGTACTTCC ACAATTGGAC AGGCAACAGG 95112 ||||||| |||||||||| ||||||||| .......... .......... .......... ...TACTTCC ACAATTGGAC AGGCAACAG. 548 TTTGTCCATA ACCCAATCTT TCCTTCTCAC AGAAAATAAA AAAGCTGGTT AATATAGTAG 95052 .......... .......... .......... .......... .......... .......... 548 CTATTTATTC CATTATATTA CTATTTGTAT CTTCTAGGTC TTTTGGTGTA TAATGGACAA 94992 .......... .......... .......... .......... .......... .......... 548 TTATATACTC AAATTCCTGA AAACACATCA GGAGTTATTA GCCTTTTCTT TAAAAAATTA 94932 .......... .......... .......... .......... .......... .......... 548 TTGTAGCTCT CTATTGTTGC TGCTTCTGAT GAGAAATAAA GTTGCATATG TTAATTTCAA 94872 .......... .......... .......... .......... .......... .......... 548 AAATACTTGA AGTTTAAACT TATTTCTTGA TACAAGGCAG TGTACTTGTT TGCTGTGTAC 94812 .......... .......... .......... .......... .......... .......... 548 TTTGAGAGTA TTCTCGTTGT TAGAAACTTC TATTAACTAT TGAGCTCGAT GCAGAGTTAC 94752 |||||| .......... .......... .......... .......... .......... ....AGTTAC 554 ATGTCG 94746 |||||| ATGTCG 560 hqPGS_C08SLe0084H03.1-_SGN-E249739+ (96251 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95240,95138 95113) ******************************************************************************** EST sequence 209 +strand 415 n (File: SGN-E200070+) 1 ATTATACTCT TTGGGAGGAT CCTTTCAAGA AGCCCAGTTA TCTTTTTGCA TTGGTTGCTG 61 GTCAGTTGGT GAGCAGAGAT GACACATTTA CAACCTGTTC AGGCCGTAAG GTCTCCCTTA 121 GAATCTGGAC CCCTGCACAA GATCTGCCCA AGACAGAACA TGCCATGTAT TCTCTCAAGG 181 CAGCTATGAA GTGGGATGAA GATGTTTTCG GGCGGGAGTA TGACCTGGAT CTTTTTAATA 241 TTGTTGCTGT TCCAGATTTT AACATGGGAG CAATGGAAAA CAAGAGCTTG AATATATTCA 301 ATTCCAAGCT TGTCCTGGCA TCCCCAGAAA CTGCAACAGA TGCTGATTAT GCGGCTATAT 361 TGGGTGTGAT TGGACATGAG TACTTCCACA ATTGGACAGG CAACAGAGTT ACATG Predicted gene structure (within gDNA segment 96528 to 94280): Exon 1 95928 95726 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 95725 95634 ( 92 n); Pd: 0.987 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 95633 95572 ( 62 n); cDNA 204 265 ( 62 n); score: 1.000 Intron 2 95571 95445 ( 127 n); Pd: 0.994 (s: 1.00), Pa: 0.999 (s: 0) Exon 3 95444 95417 ( 28 n); cDNA 266 293 ( 28 n); score: 1.000 Intron 3 95416 95327 ( 90 n); Pd: 0.310 (s: 0), Pa: 1.000 (s: 1.00) Exon 4 95326 95240 ( 87 n); cDNA 294 380 ( 87 n); score: 1.000 Intron 4 95239 95139 ( 101 n); Pd: 0.996 (s: 1.00), Pa: 0.976 (s: 0) Exon 5 95138 95113 ( 26 n); cDNA 381 406 ( 26 n); score: 1.000 Intron 5 95112 94758 ( 355 n); Pd: 0.994 (s: 0), Pa: 0.101 (s: 0) Exon 6 94757 94749 ( 9 n); cDNA 407 415 ( 9 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E200070+ 1.000 415 1.000 C PGS_C08SLe0084H03.1-_SGN-E200070+ (95928 95726,95633 95572,95444 95417,95326 95240,95138 95113,94757 94749) Alignment (genomic DNA sequence = upper lines): ATTATACTCT TTGGGAGGAT CCTTTCAAGA AGCCCAGTTA TCTTTTTGCA TTGGTTGCTG 95869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATACTCT TTGGGAGGAT CCTTTCAAGA AGCCCAGTTA TCTTTTTGCA TTGGTTGCTG 60 GTCAGTTGGT GAGCAGAGAT GACACATTTA CAACCTGTTC AGGCCGTAAG GTCTCCCTTA 95809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGTTGGT GAGCAGAGAT GACACATTTA CAACCTGTTC AGGCCGTAAG GTCTCCCTTA 120 GAATCTGGAC CCCTGCACAA GATCTGCCCA AGACAGAACA TGCCATGTAT TCTCTCAAGG 95749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCTGGAC CCCTGCACAA GATCTGCCCA AGACAGAACA TGCCATGTAT TCTCTCAAGG 180 CAGCTATGAA GTGGGATGAA GATGTGAGAT TTTAGGTTCT TTGATGTACA TCAAGTTAAT 95689 |||||||||| |||||||||| ||| CAGCTATGAA GTGGGATGAA GAT....... .......... .......... .......... 203 TATGTTTGTT GTCTTGTGGT CTTATGACAA TTTCTTTGTC AAAATTTTCC AACAGGTTTT 95629 ||||| .......... .......... .......... .......... .......... .....GTTTT 208 CGGGCGGGAG TATGACCTGG ATCTTTTTAA TATTGTTGCT GTTCCAGATT TTAACATGTT 95569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGGGCGGGAG TATGACCTGG ATCTTTTTAA TATTGTTGCT GTTCCAGATT TTAACAT... 265 AGTTCTCTGG TTTCTTCACT TTGTCATTAT TTATTCTTGA CATTTTTCTT TTCTTCTCTT 95509 .......... .......... .......... .......... .......... .......... 265 TGTTTATCCA CTCTCCTAAT TTTTTCTGTG GATAATAACT GTTTTTTTTT AATTTCATTT 95449 .......... .......... .......... .......... .......... .......... 265 CCAGGGGAGC AATGGAAAAC AAGAGCTTGA ATGTATGAGA TTTGAGATGT TATTGCATTG 95389 |||||| |||||||||| |||||||||| || ....GGGAGC AATGGAAAAC AAGAGCTTGA AT........ .......... .......... 293 TATTGCTCTG TTTATGACTT TTTCTTAATT ATCACCTAAT TATTTGACTT TGTTTTCAAC 95329 .......... .......... .......... .......... .......... .......... 293 AGATATTCAA TTCCAAGCTT GTCCTGGCAT CCCCAGAAAC TGCAACAGAT GCTGATTATG 95269 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..ATATTCAA TTCCAAGCTT GTCCTGGCAT CCCCAGAAAC TGCAACAGAT GCTGATTATG 351 CGGCTATATT GGGTGTGATT GGACATGAGG TGTGTGATAT GTTTTCATAA GCTATTGAAA 95209 |||||||||| |||||||||| ||||||||| CGGCTATATT GGGTGTGATT GGACATGAG. .......... .......... .......... 380 TTCATGAACT TTATTTTGTT TACTGATTCT TGAATGCTGA GCAAATCACC ATTTCTTGTC 95149 .......... .......... .......... .......... .......... .......... 380 CGTGTTGCAG TACTTCCACA ATTGGACAGG CAACAGGTTT GTCCATAACC CAATCTTTCC 95089 |||||||||| |||||||||| |||||| .......... TACTTCCACA ATTGGACAGG CAACAG.... .......... .......... 406 TTCTCACAGA AAATAAAAAA GCTGGTTAAT ATAGTAGCTA TTTATTCCAT TATATTACTA 95029 .......... .......... .......... .......... .......... .......... 406 TTTGTATCTT CTAGGTCTTT TGGTGTATAA TGGACAATTA TATACTCAAA TTCCTGAAAA 94969 .......... .......... .......... .......... .......... .......... 406 CACATCAGGA GTTATTAGCC TTTTCTTTAA AAAATTATTG TAGCTCTCTA TTGTTGCTGC 94909 .......... .......... .......... .......... .......... .......... 406 TTCTGATGAG AAATAAAGTT GCATATGTTA ATTTCAAAAA TACTTGAAGT TTAAACTTAT 94849 .......... .......... .......... .......... .......... .......... 406 TTCTTGATAC AAGGCAGTGT ACTTGTTTGC TGTGTACTTT GAGAGTATTC TCGTTGTTAG 94789 .......... .......... .......... .......... .......... .......... 406 AAACTTCTAT TAACTATTGA GCTCGATGCA GAGTTACATG 94749 ||||||||| .......... .......... .......... .AGTTACATG 415 hqPGS_C08SLe0084H03.1-_SGN-E200070+ (95928 95726,95633 95572,95444 95417,95326 95240,95138 95113) ******************************************************************************** EST sequence 229 +strand 570 n (File: SGN-E333309+) 1 TCAGAAGAAC ACATCCTTAG AGGGTCTTTA CAAGTCATCA GGGAATTTCT GCACCCAATG 61 TGAGGCTGAG GGTTTCCGTA AGATTACGTT CTATCAGGAT CGCCCTGACA TTATGGCAAA 121 ATACACTTGT CGCATAGAGG CAGACAAATC CTTGTATCCT GTATTGTTGT CAAATGGAAA 181 CCTTATAGAG CAAGGGGATC TGGAGGGAGG AAAGCATTAT ACTCTTTGGG AGGATCCTTT 241 CAAGAAGCCC AGTTATCTTT TTGCATTGGT TGCTGGTCAG TTGGTGAGCA GAGATGACAC 301 ATTTACAACC TGTTCAGGCC GTAAGGTCTC CCTTAGAATC TGGACCCCTG CACAAGATCT 361 GCCCAAGACA GAACATGCCA TGTATTCTCT CAAGGCAGCT ATGAAGTGGG ATGAAGATGT 421 TTTCGGGCGG GAGTATGACC TGGATCTTTT TAATATTGTT GCTGTTCCAG ATTTTAACAT 481 GGGAGCAATG GAAAACNAGA GCTTGAATAT ATTTCATTCC AAGCTTGTCC TGGCATCCCC 541 AGAAACTGCA ACAGATGCTG ATTATGCGGC Predicted gene structure (within gDNA segment 97104 to 94655): Exon 1 96433 96412 ( 22 n); cDNA 1 22 ( 22 n); score: 1.000 Intron 1 96411 96303 ( 109 n); Pd: 0.923 (s: 0), Pa: 0.984 (s: 1.00) Exon 2 96302 96228 ( 75 n); cDNA 23 97 ( 75 n); score: 1.000 Intron 2 96227 96144 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 3 96143 96036 ( 108 n); cDNA 98 205 ( 108 n); score: 1.000 Intron 3 96035 95939 ( 97 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 95938 95726 ( 213 n); cDNA 206 418 ( 213 n); score: 1.000 Intron 4 95725 95634 ( 92 n); Pd: 0.987 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 95633 95572 ( 62 n); cDNA 419 480 ( 62 n); score: 1.000 Intron 5 95571 95445 ( 127 n); Pd: 0.994 (s: 1.00), Pa: 0.999 (s: 0) Exon 6 95444 95417 ( 28 n); cDNA 481 508 ( 28 n); score: 0.964 Intron 6 95416 95327 ( 90 n); Pd: 0.310 (s: 0), Pa: 1.000 (s: 0.96) Exon 7 95326 95265 ( 62 n); cDNA 509 570 ( 62 n); score: 0.968 MATCH C08SLe0084H03.1- SGN-E333309+ 0.996 570 1.000 C PGS_C08SLe0084H03.1-_SGN-E333309+ (96433 96412,96302 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95265) Alignment (genomic DNA sequence = upper lines): TCAGAAGAAC ACATCCTTAG AGGTGAAATA GAAGGGCAGG ATTTTGTCTT ATTTATAATT 96374 |||||||||| |||||||||| || TCAGAAGAAC ACATCCTTAG AG........ .......... .......... .......... 22 TTTTCTTGCA CTTCGAATTT TAGTAACACT GTGAAATGGG TTTATGGTGA CATTATCTAT 96314 .......... .......... .......... .......... .......... .......... 22 ATTTACTTCA GGGTCTTTAC AAGTCATCAG GGAATTTCTG CACCCAATGT GAGGCTGAGG 96254 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GGTCTTTAC AAGTCATCAG GGAATTTCTG CACCCAATGT GAGGCTGAGG 71 GTTTCCGTAA GATTACGTTC TATCAGGTAT GCCTTATTTT TATTGTTTGT CCTCTAGGAT 96194 |||||||||| |||||||||| |||||| GTTTCCGTAA GATTACGTTC TATCAG.... .......... .......... .......... 97 ATTATCGTTT TTTTTAAATG CTTGGTAATG GCTGAGATTT TCTCCATTAG GATCGCCCTG 96134 |||||||||| .......... .......... .......... .......... .......... GATCGCCCTG 107 ACATTATGGC AAAATACACT TGTCGCATAG AGGCAGACAA ATCCTTGTAT CCTGTATTGT 96074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTATGGC AAAATACACT TGTCGCATAG AGGCAGACAA ATCCTTGTAT CCTGTATTGT 167 TGTCAAATGG AAACCTTATA GAGCAAGGGG ATCTGGAGGT ACACTTGGAT TTCCTGTACT 96014 |||||||||| |||||||||| |||||||||| |||||||| TGTCAAATGG AAACCTTATA GAGCAAGGGG ATCTGGAG.. .......... .......... 205 ATTTGTTGAA AGTTGTTTTC TAGTAACCCT TATGCAACTA ATCAAATTAT TCTCTTCTTT 95954 .......... .......... .......... .......... .......... .......... 205 TTTTGTTTTT TGCAGGGAGG AAAGCATTAT ACTCTTTGGG AGGATCCTTT CAAGAAGCCC 95894 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GGAGG AAAGCATTAT ACTCTTTGGG AGGATCCTTT CAAGAAGCCC 250 AGTTATCTTT TTGCATTGGT TGCTGGTCAG TTGGTGAGCA GAGATGACAC ATTTACAACC 95834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTATCTTT TTGCATTGGT TGCTGGTCAG TTGGTGAGCA GAGATGACAC ATTTACAACC 310 TGTTCAGGCC GTAAGGTCTC CCTTAGAATC TGGACCCCTG CACAAGATCT GCCCAAGACA 95774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCAGGCC GTAAGGTCTC CCTTAGAATC TGGACCCCTG CACAAGATCT GCCCAAGACA 370 GAACATGCCA TGTATTCTCT CAAGGCAGCT ATGAAGTGGG ATGAAGATGT GAGATTTTAG 95714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GAACATGCCA TGTATTCTCT CAAGGCAGCT ATGAAGTGGG ATGAAGAT.. .......... 418 GTTCTTTGAT GTACATCAAG TTAATTATGT TTGTTGTCTT GTGGTCTTAT GACAATTTCT 95654 .......... .......... .......... .......... .......... .......... 418 TTGTCAAAAT TTTCCAACAG GTTTTCGGGC GGGAGTATGA CCTGGATCTT TTTAATATTG 95594 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTTTTCGGGC GGGAGTATGA CCTGGATCTT TTTAATATTG 458 TTGCTGTTCC AGATTTTAAC ATGTTAGTTC TCTGGTTTCT TCACTTTGTC ATTATTTATT 95534 |||||||||| |||||||||| || TTGCTGTTCC AGATTTTAAC AT........ .......... .......... .......... 480 CTTGACATTT TTCTTTTCTT CTCTTTGTTT ATCCACTCTC CTAATTTTTT CTGTGGATAA 95474 .......... .......... .......... .......... .......... .......... 480 TAACTGTTTT TTTTTAATTT CATTTCCAGG GGAGCAATGG AAAACAAGAG CTTGAATGTA 95414 | |||||||||| ||||| |||| ||||||| .......... .......... .........G GGAGCAATGG AAAACNAGAG CTTGAAT... 508 TGAGATTTGA GATGTTATTG CATTGTATTG CTCTGTTTAT GACTTTTTCT TAATTATCAC 95354 .......... .......... .......... .......... .......... .......... 508 CTAATTATTT GACTTTGTTT TCAACAGATA TTCAATTCCA AGCTTGTCCT GGCATCCCCA 95294 ||| || |||||| |||||||||| |||||||||| .......... .......... .......ATA TTTCATTCCA AGCTTGTCCT GGCATCCCCA 541 GAAACTGCAA CAGATGCTGA TTATGCGGC 95265 |||||||||| |||||||||| ||||||||| GAAACTGCAA CAGATGCTGA TTATGCGGC 570 hqPGS_C08SLe0084H03.1-_SGN-E333309+ (96433 96412,96302 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95265) ******************************************************************************** EST sequence 181 +strand 437 n (File: SGN-E295660+) 1 TCGCATAGAG GCAGACAAAT CCTTGTATCC TGTATTGTTG TCAAATGGAA ACCTTATAGA 61 GCAAGGGGAT CTGGAGGGAG GAAAGCATTA TACTCTTTGG GAGGATCCTT TCAAGAAGCC 121 CAGTTATCTT TTTGCATTGG TTGCTGGTCA GTTGGTGAGC AGAGATGACA CATTTACAAC 181 CTGTTCAGGC CGTAAGGTCT CCCTTAGAAT CTGGACCCCT GCACAAGATC TGCCCAAGAC 241 AGAACATGCC ATGTATTCTC TCAAGGCAGC TATGAAGTGG GATGAAGATG TTTTCGGGCG 301 GGAGTATGAC CTGGATCTTT TTAATATTGT TGCTGTTCCA GATTTTAACA TGGGAGCAAT 361 GGAAAACAAG AGCTTGAATA TATTCAATTC CAAGCTTGTC CTGGCATCCC CAGAAACTGC 421 AACAGATGCT GATTATG Predicted gene structure (within gDNA segment 96711 to 94659): Exon 1 96111 96036 ( 76 n); cDNA 1 76 ( 76 n); score: 1.000 Intron 1 96035 95939 ( 97 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 95938 95726 ( 213 n); cDNA 77 289 ( 213 n); score: 1.000 Intron 2 95725 95634 ( 92 n); Pd: 0.987 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 95633 95572 ( 62 n); cDNA 290 351 ( 62 n); score: 1.000 Intron 3 95571 95445 ( 127 n); Pd: 0.994 (s: 1.00), Pa: 0.999 (s: 0) Exon 4 95444 95417 ( 28 n); cDNA 352 379 ( 28 n); score: 1.000 Intron 4 95416 95327 ( 90 n); Pd: 0.310 (s: 0), Pa: 1.000 (s: 1.00) Exon 5 95326 95269 ( 58 n); cDNA 380 437 ( 58 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E295660+ 1.000 437 1.000 C PGS_C08SLe0084H03.1-_SGN-E295660+ (96111 96036,95938 95726,95633 95572,95444 95417,95326 95269) Alignment (genomic DNA sequence = upper lines): TCGCATAGAG GCAGACAAAT CCTTGTATCC TGTATTGTTG TCAAATGGAA ACCTTATAGA 96052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCATAGAG GCAGACAAAT CCTTGTATCC TGTATTGTTG TCAAATGGAA ACCTTATAGA 60 GCAAGGGGAT CTGGAGGTAC ACTTGGATTT CCTGTACTAT TTGTTGAAAG TTGTTTTCTA 95992 |||||||||| |||||| GCAAGGGGAT CTGGAG.... .......... .......... .......... .......... 76 GTAACCCTTA TGCAACTAAT CAAATTATTC TCTTCTTTTT TTGTTTTTTG CAGGGAGGAA 95932 ||||||| .......... .......... .......... .......... .......... ...GGAGGAA 83 AGCATTATAC TCTTTGGGAG GATCCTTTCA AGAAGCCCAG TTATCTTTTT GCATTGGTTG 95872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATTATAC TCTTTGGGAG GATCCTTTCA AGAAGCCCAG TTATCTTTTT GCATTGGTTG 143 CTGGTCAGTT GGTGAGCAGA GATGACACAT TTACAACCTG TTCAGGCCGT AAGGTCTCCC 95812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTCAGTT GGTGAGCAGA GATGACACAT TTACAACCTG TTCAGGCCGT AAGGTCTCCC 203 TTAGAATCTG GACCCCTGCA CAAGATCTGC CCAAGACAGA ACATGCCATG TATTCTCTCA 95752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAATCTG GACCCCTGCA CAAGATCTGC CCAAGACAGA ACATGCCATG TATTCTCTCA 263 AGGCAGCTAT GAAGTGGGAT GAAGATGTGA GATTTTAGGT TCTTTGATGT ACATCAAGTT 95692 |||||||||| |||||||||| |||||| AGGCAGCTAT GAAGTGGGAT GAAGAT.... .......... .......... .......... 289 AATTATGTTT GTTGTCTTGT GGTCTTATGA CAATTTCTTT GTCAAAATTT TCCAACAGGT 95632 || .......... .......... .......... .......... .......... ........GT 291 TTTCGGGCGG GAGTATGACC TGGATCTTTT TAATATTGTT GCTGTTCCAG ATTTTAACAT 95572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGGGCGG GAGTATGACC TGGATCTTTT TAATATTGTT GCTGTTCCAG ATTTTAACAT 351 GTTAGTTCTC TGGTTTCTTC ACTTTGTCAT TATTTATTCT TGACATTTTT CTTTTCTTCT 95512 .......... .......... .......... .......... .......... .......... 351 CTTTGTTTAT CCACTCTCCT AATTTTTTCT GTGGATAATA ACTGTTTTTT TTTAATTTCA 95452 .......... .......... .......... .......... .......... .......... 351 TTTCCAGGGG AGCAATGGAA AACAAGAGCT TGAATGTATG AGATTTGAGA TGTTATTGCA 95392 ||| |||||||||| |||||||||| ||||| .......GGG AGCAATGGAA AACAAGAGCT TGAAT..... .......... .......... 379 TTGTATTGCT CTGTTTATGA CTTTTTCTTA ATTATCACCT AATTATTTGA CTTTGTTTTC 95332 .......... .......... .......... .......... .......... .......... 379 AACAGATATT CAATTCCAAG CTTGTCCTGG CATCCCCAGA AACTGCAACA GATGCTGATT 95272 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....ATATT CAATTCCAAG CTTGTCCTGG CATCCCCAGA AACTGCAACA GATGCTGATT 434 ATG 95269 ||| ATG 437 hqPGS_C08SLe0084H03.1-_SGN-E295660+ (96111 96036,95938 95726,95633 95572,95444 95417,95326 95269) ******************************************************************************** EST sequence 242 +strand 736 n (File: SGN-E333887+) 1 ATCAATAGAG TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG 61 CAGATACAAA AAATACCTTA CTTCAGAGGT TGCGCATTGG AGGAGGTGTC AAATCCCGCG 121 TTTTCCATTA GTTCAACCTA GAAGAATTGA CCGGAGATTA ATCTGTTCAG TTGCAACTGA 181 ACCTCTACCA AAAGAAGTTG AAGAATCCAA GATGGAAGCA CCAAAGGAAA TCTTTCTGAA 241 GGATTACAAA CAACCTGATT ACTATTTTGA CACGTTGGAT CTGAAATTCG CACTGGGTGA 301 GGAAAGTACT ATTGTCGCTT CCAAAATTGC TGTCAACCCC AGAGTTGAAG GTCAGTCTTT 361 CCCACTTGTC CTAGATGGGC GAGATCTGAA GTTGCAATCA GTTAAGATCA ACGGCAATCC 421 GCTGAAGGAG GAAGATTTCC TCGTGGACTC GCGCCACCTG ACTCTGAAAT CCCCTCCAAG 481 TAGCAAATTC ACCTTGGAGA TTGTGACAGA AATACATCCT CAGAAGAACA CATCCTTAGA 541 GGGTCTTTAC AAGTCATCAG GGAATTTCTG CACCCAATGT GAGGCTGAGG GTTTCCGTAA 601 GATTACGTTC TATCAGGATC GCCCTGACAT TATGGCAAAA TACACTTGTC GCATAGAGGC 661 AGACAAATCC TTGTATCCTG TATTGTTGTC AAATGGAAAC CTTATAGAGC AAGGGGATCT 721 GGGAGGAGGA AAGCAT Predicted gene structure (within gDNA segment 98273 to 95288): Exon 1 97591 97514 ( 78 n); cDNA 11 88 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 89 133 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 134 274 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 275 350 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 351 427 ( 77 n); score: 1.000 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 6 96525 96412 ( 114 n); cDNA 428 541 ( 114 n); score: 0.991 Intron 6 96411 96303 ( 109 n); Pd: 0.923 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 96302 96228 ( 75 n); cDNA 542 616 ( 75 n); score: 1.000 Intron 7 96227 96144 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 8 96143 96036 ( 108 n); cDNA 617 724 ( 108 n); score: 0.981 Intron 8 96035 95939 ( 97 n); Pd: 0.991 (s: 0.96), Pa: 1.000 (s: 0) Exon 9 95938 95927 ( 12 n); cDNA 725 736 ( 12 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E333887+ 0.996 726 0.986 C PGS_C08SLe0084H03.1-_SGN-E333887+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96036,95938 95927) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 70 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 88 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 88 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 117 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 133 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 141 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 201 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 261 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 274 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 298 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 350 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 350 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 350 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 350 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 373 GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAGGTACCT 96632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAG...... 427 ATATCAGAGT CTTGCTCCTA GAACGTTCAA AGATGTCTTT TAATTTTTAC ATGATATGTC 96572 .......... .......... .......... .......... .......... .......... 427 ACATGATGTT ACTTTTACTC ATACATGATT CACCTAATGT GTTTAGGAGG AAGATTTCCA 96512 |||| ||||||||| .......... .......... .......... .......... ......GAGG AAGATTTCCT 441 CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 96452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 501 TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG GTGAAATAGA AGGGCAGGAT 96392 |||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG .......... .......... 541 TTTGTCTTAT TTATAATTTT TTCTTGCACT TCGAATTTTA GTAACACTGT GAAATGGGTT 96332 .......... .......... .......... .......... .......... .......... 541 TATGGTGACA TTATCTATAT TTACTTCAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA 96272 | |||||||||| |||||||||| |||||||||| .......... .......... .........G GTCTTTACAA GTCATCAGGG AATTTCTGCA 572 CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAGGTATGC CTTATTTTTA 96212 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAG...... .......... 616 TTGTTTGTCC TCTAGGATAT TATCGTTTTT TTTAAATGCT TGGTAATGGC TGAGATTTTC 96152 .......... .......... .......... .......... .......... .......... 616 TCCATTAGGA TCGCCCTGAC ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT 96092 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA TCGCCCTGAC ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT 668 CCTTGTATCC TGTATTGTTG TCAAATGGAA ACCTTATAGA GCAAGGGGAT CTGGAGGTAC 96032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CCTTGTATCC TGTATTGTTG TCAAATGGAA ACCTTATAGA GCAAGGGGAT CTGGGA.... 724 ACTTGGATTT CCTGTACTAT TTGTTGAAAG TTGTTTTCTA GTAACCCTTA TGCAACTAAT 95972 .......... .......... .......... .......... .......... .......... 724 CAAATTATTC TCTTCTTTTT TTGTTTTTTG CAGGGAGGAA AGCAT 95927 ||||||| ||||| .......... .......... .......... ...GGAGGAA AGCAT 736 hqPGS_C08SLe0084H03.1-_SGN-E333887+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96036,95938 95927) ******************************************************************************** EST sequence 263 +strand 594 n (File: SGN-E331665+) 1 ATTAGTTCAA CCTAGAAGAA TTGACCGGAG ATTAATCTGT TCAGTTGCAA CTGAACCTCT 61 ACCAAAAGAA GTTGAAGAAT CCAAGATGGA AGCACCAAAG GAAATCTTTC TGAAGGATTA 121 CAAACAACCT GATTACTATT TTGACACGTT GGATCTGAAA TTCGCACTGG GTGAGGAAAG 181 TACTATTGTC GCTTCCAAAA TTGCTGTCAA CCCCAGAGTT GAAGGTCAGT CTTTCCCACT 241 TGTCCTAGAT GGGCGAGATC TGAAGTTGCA ATCAGTTAAG ATCAACGGCA ATCCGCTGAA 301 GGAGGAAGAT TTCCTCGTGG ACTCGCGCCA CCTGACTCTG AAATCCCCTC CAAGTAGCAA 361 ATTCACCTTG GAGATTGTGA CAGAAATACA TCCTCAGAAG AACACATCCT TAGAGGGTCT 421 TTACAAGTCA TCAGGGAATT TCTGCACCCA ATGTGAGGCT GAGGGTTTCC GTAAGATTAC 481 GTTCTATCAG GATCGCCCTG ACATTATGGC AAAATACACT TGTCGCATAG AGGCAGACAA 541 ATCCTTGTAT CCTGTATTGG TGTCAAATGG AAACCTTATA GAGCAAGGGG ATCT Predicted gene structure (within gDNA segment 97909 to 95430): Exon 1 97342 97336 ( 7 n); cDNA 1 7 ( 7 n); score: 1.000 Intron 1 97335 97240 ( 96 n); Pd: 0.966 (s: 0), Pa: 0.992 (s: 1.00) Exon 2 97239 97099 ( 141 n); cDNA 8 148 ( 141 n); score: 1.000 Intron 2 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 3 97015 96940 ( 76 n); cDNA 149 224 ( 76 n); score: 1.000 Intron 3 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 96714 96638 ( 77 n); cDNA 225 301 ( 77 n); score: 1.000 Intron 4 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 5 96525 96412 ( 114 n); cDNA 302 415 ( 114 n); score: 0.991 Intron 5 96411 96303 ( 109 n); Pd: 0.923 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 6 96302 96228 ( 75 n); cDNA 416 490 ( 75 n); score: 1.000 Intron 6 96227 96144 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 7 96143 96040 ( 104 n); cDNA 491 594 ( 104 n); score: 0.990 MATCH C08SLe0084H03.1- SGN-E331665+ 0.997 594 1.000 C PGS_C08SLe0084H03.1-_SGN-E331665+ (97342 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96040) Alignment (genomic DNA sequence = upper lines): ATTAGTTGTA AGCAATTATG TCCAGATTAT AATGTACTTG CATATTTTGT CAATGATGTT 97283 ||||||| ATTAGTT... .......... .......... .......... .......... .......... 7 TTTCTATGCT GACGTTTGTT TTGTTTGTTT GTATGCTTCC CAGCAACCTA GAAGAATTGA 97223 ||||||| |||||||||| .......... .......... .......... .......... ...CAACCTA GAAGAATTGA 24 CCGGAGATTA ATCTGTTCAG TTGCAACTGA ACCTCTACCA AAAGAAGTTG AAGAATCCAA 97163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAGATTA ATCTGTTCAG TTGCAACTGA ACCTCTACCA AAAGAAGTTG AAGAATCCAA 84 GATGGAAGCA CCAAAGGAAA TCTTTCTGAA GGATTACAAA CAACCTGATT ACTATTTTGA 97103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGAAGCA CCAAAGGAAA TCTTTCTGAA GGATTACAAA CAACCTGATT ACTATTTTGA 144 CACGGTATAT CCCTTAATTC TTCTTCTATC TAGGTGAAGG TTTGGATTTT CTTCAAGTTT 97043 |||| CACG...... .......... .......... .......... .......... .......... 148 TGTGTCTAAA TCAAACTACT ATTTTAGTTG GATCTGAAAT TCGCACTGGG TGAGGAAAGT 96983 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TTG GATCTGAAAT TCGCACTGGG TGAGGAAAGT 181 ACTATTGTCG CTTCCAAAAT TGCTGTCAAC CCCAGAGTTG AAGGTACATC TTGTTACCCC 96923 |||||||||| |||||||||| |||||||||| |||||||||| ||| ACTATTGTCG CTTCCAAAAT TGCTGTCAAC CCCAGAGTTG AAG....... .......... 224 TTCGGATTTT CTTATTTTTA TCTGCAATTC GTTTCGCGAA AAAAATAAAA CAGAGTCATC 96863 .......... .......... .......... .......... .......... .......... 224 CACAGCACAC TTTTTTCTTT CACATTTCGC TGGGTTGATA TACTAAAACT AAATGATACA 96803 .......... .......... .......... .......... .......... .......... 224 TACTTCTTGC CTGATTGAGG TTTCTCAAAA CTTCAATAGT TGTATTTATT CCAGAACTCA 96743 .......... .......... .......... .......... .......... .......... 224 CAGTGTGTTT CTAATATATC TTGAACAGGT CAGTCTTTCC CACTTGTCCT AGATGGGCGA 96683 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT CAGTCTTTCC CACTTGTCCT AGATGGGCGA 256 GATCTGAAGT TGCAATCAGT TAAGATCAAC GGCAATCCGC TGAAGGTACC TATATCAGAG 96623 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GATCTGAAGT TGCAATCAGT TAAGATCAAC GGCAATCCGC TGAAG..... .......... 301 TCTTGCTCCT AGAACGTTCA AAGATGTCTT TTAATTTTTA CATGATATGT CACATGATGT 96563 .......... .......... .......... .......... .......... .......... 301 TACTTTTACT CATACATGAT TCACCTAATG TGTTTAGGAG GAAGATTTCC ACGTGGACTC 96503 ||| |||||||||| ||||||||| .......... .......... .......... .......GAG GAAGATTTCC TCGTGGACTC 324 GCGCCACCTG ACTCTGAAAT CCCCTCCAAG TAGCAAATTC ACCTTGGAGA TTGTGACAGA 96443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCCACCTG ACTCTGAAAT CCCCTCCAAG TAGCAAATTC ACCTTGGAGA TTGTGACAGA 384 AATACATCCT CAGAAGAACA CATCCTTAGA GGTGAAATAG AAGGGCAGGA TTTTGTCTTA 96383 |||||||||| |||||||||| |||||||||| | AATACATCCT CAGAAGAACA CATCCTTAGA G......... .......... .......... 415 TTTATAATTT TTTCTTGCAC TTCGAATTTT AGTAACACTG TGAAATGGGT TTATGGTGAC 96323 .......... .......... .......... .......... .......... .......... 415 ATTATCTATA TTTACTTCAG GGTCTTTACA AGTCATCAGG GAATTTCTGC ACCCAATGTG 96263 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GGTCTTTACA AGTCATCAGG GAATTTCTGC ACCCAATGTG 455 AGGCTGAGGG TTTCCGTAAG ATTACGTTCT ATCAGGTATG CCTTATTTTT ATTGTTTGTC 96203 |||||||||| |||||||||| |||||||||| ||||| AGGCTGAGGG TTTCCGTAAG ATTACGTTCT ATCAG..... .......... .......... 490 CTCTAGGATA TTATCGTTTT TTTTAAATGC TTGGTAATGG CTGAGATTTT CTCCATTAGG 96143 | .......... .......... .......... .......... .......... .........G 491 ATCGCCCTGA CATTATGGCA AAATACACTT GTCGCATAGA GGCAGACAAA TCCTTGTATC 96083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCCCTGA CATTATGGCA AAATACACTT GTCGCATAGA GGCAGACAAA TCCTTGTATC 551 CTGTATTGTT GTCAAATGGA AACCTTATAG AGCAAGGGGA TCT 96040 |||||||| | |||||||||| |||||||||| |||||||||| ||| CTGTATTGGT GTCAAATGGA AACCTTATAG AGCAAGGGGA TCT 594 hqPGS_C08SLe0084H03.1-_SGN-E331665+ (97342 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96040) ******************************************************************************** EST sequence 175 +strand 719 n (File: SGN-E316327+) 1 TTTTGCAAAT CATCATCAAT AGAGTTTCAG GCAAGTTGCC GTGTTACTTC AGTTGGGCGC 61 TCGAGGGATA TCTGCAGATA CAAAAAATAC CTTACTTCAG AGGTTGCGCA TTGGAGGAGG 121 TGTCAAATCC CGCGTTTTCC ATTAGTTCAA CCTAGAAGAA TTGACCGGAG ATTAATCTGT 181 TCAGTTGCAA CTGAACCTCT ACCAAAAGAA GTTGAAGAAT CCAAGATGGA AGCACCAAAG 241 GAAATCTTTC TGAAGGATTA CAAACAACCT GATTACTATT TTGACACGTT GGATCTGAAA 301 TTCGCACTGG GTGAGGAAAG TACTATTGTC GCTTCCAAAA TTGCTGTCAA CCCCAGAGTT 361 GAAGGTCAGT CTTTCCCACT TGTCCTAGAT GGGCGAGATC TGAAGTTGCA ATCAGTTAAG 421 ATCAACGGCA ATCCGCTGAA GGAGGAAGAT TTCCTCGTGG ACTCGCGCCA CCTGACTCTG 481 AAATCCCCTC CAAGTAGCAA ATTCACCTTG GAGATTGTGA CAGAAATACA TCCTCAGAAG 541 AACACATCCT TAGAGGGTCT TTACAAGTCA TCAGGGAATT TCTGCACCCA ATGTGAGGCT 601 GAGGGTTTCC GTAAGATTAC GTTCTATCAG GATCGCCCTG ACATTATGGC AAAATACACT 661 TGTCGCATAG AGGCAGACAA ATCCTTGTAT CCTGTATTGT TGTCAAATGG AAACCTTAT Predicted gene structure (within gDNA segment 98413 to 95445): Exon 1 97591 97514 ( 78 n); cDNA 25 102 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 103 147 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 148 288 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 289 364 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 365 441 ( 77 n); score: 1.000 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 6 96525 96412 ( 114 n); cDNA 442 555 ( 114 n); score: 0.991 Intron 6 96411 96303 ( 109 n); Pd: 0.923 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 96302 96228 ( 75 n); cDNA 556 630 ( 75 n); score: 1.000 Intron 7 96227 96144 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 8 96143 96055 ( 89 n); cDNA 631 719 ( 89 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E316327+ 0.998 695 0.967 C PGS_C08SLe0084H03.1-_SGN-E316327+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96055) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 84 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 102 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 102 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 131 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 147 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 155 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 215 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 275 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 288 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 312 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 364 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 364 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 364 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 364 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 387 GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAGGTACCT 96632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAG...... 441 ATATCAGAGT CTTGCTCCTA GAACGTTCAA AGATGTCTTT TAATTTTTAC ATGATATGTC 96572 .......... .......... .......... .......... .......... .......... 441 ACATGATGTT ACTTTTACTC ATACATGATT CACCTAATGT GTTTAGGAGG AAGATTTCCA 96512 |||| ||||||||| .......... .......... .......... .......... ......GAGG AAGATTTCCT 455 CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 96452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 515 TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG GTGAAATAGA AGGGCAGGAT 96392 |||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG .......... .......... 555 TTTGTCTTAT TTATAATTTT TTCTTGCACT TCGAATTTTA GTAACACTGT GAAATGGGTT 96332 .......... .......... .......... .......... .......... .......... 555 TATGGTGACA TTATCTATAT TTACTTCAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA 96272 | |||||||||| |||||||||| |||||||||| .......... .......... .........G GTCTTTACAA GTCATCAGGG AATTTCTGCA 586 CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAGGTATGC CTTATTTTTA 96212 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAG...... .......... 630 TTGTTTGTCC TCTAGGATAT TATCGTTTTT TTTAAATGCT TGGTAATGGC TGAGATTTTC 96152 .......... .......... .......... .......... .......... .......... 630 TCCATTAGGA TCGCCCTGAC ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT 96092 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA TCGCCCTGAC ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT 682 CCTTGTATCC TGTATTGTTG TCAAATGGAA ACCTTAT 96055 |||||||||| |||||||||| |||||||||| ||||||| CCTTGTATCC TGTATTGTTG TCAAATGGAA ACCTTAT 719 hqPGS_C08SLe0084H03.1-_SGN-E316327+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96055) ******************************************************************************** EST sequence 215 +strand 687 n (File: SGN-E556817+) 1 AAATCATCAT CAATAGAGTT TCAGGCAAGT TGCCGTGTTA CTTCAGTTGG GAGCTCGAGG 61 GATATCTGCA GATACAAAAA ATACCTTACT TCAGAGGTTG CGCATTGGAG GAGGTGTCAA 121 ATCCCGCGTT TTCCATTAGT TCAACCTAGA AGAATTGACC GGAGATTAAT CTGTTCAGTT 181 GCAACTGAAC CTCTACCAAA AGAAGTTGAA GAATCCAAGA TGGAAGCACC AAAGGAAATC 241 TTTCTGAAGG ATTACAAACA ACCTGATTAC TATTTTGACA CGTTGGATCT GAAATTCGCA 301 CTGGGTGAGG AAAGTACTAT TGTCGCTTCC AAAATTGCTG TCAACCCCAG AGTTGAAGGT 361 CAGTCTTTCC CACTTGTCCT AGATGGGCGA GATCTGAAGT TGCAATCAGT TAAGATCAAC 421 GGCAATCCGC TGAAGGAGGA AGATTTCCTC GTGGACTCGC GCCACCTGAC TCTGAAATCC 481 CCTCCAAGTA GCAAATTCAC CTTGGAGATT GTGACAGAAA TACATCCTCA GAAGAACACA 541 TCCTTAGAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA CCCAATGTGA GGCTGAGGGT 601 TTCCGTAAGA TTACGTTCTA TCAGGATCGC CCTGACATTA TGGCTAAATA CTCTTGTCGC 661 ATAGAGGCAA ACAAATCCTT GTATCCT Predicted gene structure (within gDNA segment 98353 to 95471): Exon 1 97591 97514 ( 78 n); cDNA 19 96 ( 78 n); score: 0.987 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 0.98), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 97 141 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 142 282 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 283 358 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 359 435 ( 77 n); score: 1.000 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 6 96525 96412 ( 114 n); cDNA 436 549 ( 114 n); score: 0.991 Intron 6 96411 96303 ( 109 n); Pd: 0.923 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 96302 96228 ( 75 n); cDNA 550 624 ( 75 n); score: 1.000 Intron 7 96227 96144 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 0.94) Exon 8 96143 96081 ( 63 n); cDNA 625 687 ( 63 n); score: 0.952 MATCH C08SLe0084H03.1- SGN-E556817+ 0.992 669 0.974 C PGS_C08SLe0084H03.1-_SGN-E556817+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96081) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGAGCTCGA GGGATATCTG CAGATACAAA 78 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 96 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 96 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 125 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 141 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 149 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 209 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 269 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 282 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 306 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 358 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 358 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 358 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 358 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 381 GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAGGTACCT 96632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAG...... 435 ATATCAGAGT CTTGCTCCTA GAACGTTCAA AGATGTCTTT TAATTTTTAC ATGATATGTC 96572 .......... .......... .......... .......... .......... .......... 435 ACATGATGTT ACTTTTACTC ATACATGATT CACCTAATGT GTTTAGGAGG AAGATTTCCA 96512 |||| ||||||||| .......... .......... .......... .......... ......GAGG AAGATTTCCT 449 CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 96452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 509 TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG GTGAAATAGA AGGGCAGGAT 96392 |||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG .......... .......... 549 TTTGTCTTAT TTATAATTTT TTCTTGCACT TCGAATTTTA GTAACACTGT GAAATGGGTT 96332 .......... .......... .......... .......... .......... .......... 549 TATGGTGACA TTATCTATAT TTACTTCAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA 96272 | |||||||||| |||||||||| |||||||||| .......... .......... .........G GTCTTTACAA GTCATCAGGG AATTTCTGCA 580 CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAGGTATGC CTTATTTTTA 96212 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAG...... .......... 624 TTGTTTGTCC TCTAGGATAT TATCGTTTTT TTTAAATGCT TGGTAATGGC TGAGATTTTC 96152 .......... .......... .......... .......... .......... .......... 624 TCCATTAGGA TCGCCCTGAC ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT 96092 || |||||||||| |||||||| | ||||| |||| |||||||||| ||| |||||| ........GA TCGCCCTGAC ATTATGGCTA AATACTCTTG TCGCATAGAG GCAAACAAAT 676 CCTTGTATCC T 96081 |||||||||| | CCTTGTATCC T 687 hqPGS_C08SLe0084H03.1-_SGN-E556817+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96081) ******************************************************************************** EST sequence 201 +strand 685 n (File: SGN-E554724+) 1 AAATCATCAT CAATAGAGTT TCAGGCAAGT TGCCGTGTTA CTTCAGTTGG GCGCTCGAGG 61 GATATCTGCA GATACAAAAA ATACCTTACT TCAGAGGTTG CGCATTGGAG GAGGTGTCAA 121 ATCCCGCGTT TTCCATTAGT TCAACCTAGA AGAATTGACC GGAGATTAAT CTGTTCAGTT 181 GCAACTGAAC CTCTACCAAA AGAAGTTGAA GAATCCAAGA TGGAAGCACC AAAGGAAATC 241 TTTCTGAAGG ATTACAAACA ACCTGATTAC TATTTTGACA CGTTGGATCT GAAATTCGCA 301 CTGGGTGAGG AAAGTACTAT TGTCGCTTCC AAAATTGCTG TCAACCCCAG AGTTGAAGGT 361 CAGTCTTTCC CACTTGTCCT AGATGGGCGA GATCTGAAGT TGCAATCAGT TAAGATCAAC 421 GGCAATCCGC TGAAGGAGGA AGATTTCCTC GTGGACTCGC GCCACCTGAC TCTGAAATCC 481 CCTCCAAGTA GCAAATTCAC CTTGGAGATT GTGACAGAAA TACATCCTCA GAAGAACACA 541 TCCTTAGAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA CCCAATGTGA GGCTGAGGGT 601 TTCCGTAAGA TTACGTTCTA TCAGGATCGC CCTGACATTA TGGGAAAATA CACTTGTCGC 661 ATAGAGGCAG ACAAATCCTT GTATC Predicted gene structure (within gDNA segment 98353 to 95473): Exon 1 97591 97514 ( 78 n); cDNA 19 96 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 97 141 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 142 282 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 283 358 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 359 435 ( 77 n); score: 1.000 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 6 96525 96412 ( 114 n); cDNA 436 549 ( 114 n); score: 0.991 Intron 6 96411 96303 ( 109 n); Pd: 0.923 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 96302 96228 ( 75 n); cDNA 550 624 ( 75 n); score: 1.000 Intron 7 96227 96144 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 0.98) Exon 8 96143 96083 ( 61 n); cDNA 625 685 ( 61 n); score: 0.984 MATCH C08SLe0084H03.1- SGN-E554724+ 0.997 667 0.974 C PGS_C08SLe0084H03.1-_SGN-E554724+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96083) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 78 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 96 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 96 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 125 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 141 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 149 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 209 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 269 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 282 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 306 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 358 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 358 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 358 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 358 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 381 GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAGGTACCT 96632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAG...... 435 ATATCAGAGT CTTGCTCCTA GAACGTTCAA AGATGTCTTT TAATTTTTAC ATGATATGTC 96572 .......... .......... .......... .......... .......... .......... 435 ACATGATGTT ACTTTTACTC ATACATGATT CACCTAATGT GTTTAGGAGG AAGATTTCCA 96512 |||| ||||||||| .......... .......... .......... .......... ......GAGG AAGATTTCCT 449 CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 96452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 509 TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG GTGAAATAGA AGGGCAGGAT 96392 |||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG .......... .......... 549 TTTGTCTTAT TTATAATTTT TTCTTGCACT TCGAATTTTA GTAACACTGT GAAATGGGTT 96332 .......... .......... .......... .......... .......... .......... 549 TATGGTGACA TTATCTATAT TTACTTCAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA 96272 | |||||||||| |||||||||| |||||||||| .......... .......... .........G GTCTTTACAA GTCATCAGGG AATTTCTGCA 580 CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAGGTATGC CTTATTTTTA 96212 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAG...... .......... 624 TTGTTTGTCC TCTAGGATAT TATCGTTTTT TTTAAATGCT TGGTAATGGC TGAGATTTTC 96152 .......... .......... .......... .......... .......... .......... 624 TCCATTAGGA TCGCCCTGAC ATTATGGCAA AATACACTTG TCGCATAGAG GCAGACAAAT 96092 || |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ........GA TCGCCCTGAC ATTATGGGAA AATACACTTG TCGCATAGAG GCAGACAAAT 676 CCTTGTATC 96083 ||||||||| CCTTGTATC 685 hqPGS_C08SLe0084H03.1-_SGN-E554724+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96083) ******************************************************************************** EST sequence 202 +strand 658 n (File: SGN-E554726+) 1 AAATCATCAT CAATAGAGTT TCAGGCAAGT TGCCGTGTTA CTTCAGTTGG GCGCTCGAGG 61 GATATCTGCA GATACAAAAA ATACCTTACT TCAGAGGTTG CGCATTGGAG GAGGTGTCAA 121 ATCCCGCGTT TTCCATTAGT TCAACCTAGA AGAATTGACC GGAGATTAAT CTGTTCAGTT 181 GCAACTGAAC CTCTACCAAA AGAAGTTGAA GAATCCAAGA TGGAAGCACC AAAGGAAATC 241 TTTCTGAAGG ATTACAAACA ACCTGATTAC TATTTTGACA CGTTGGATCT GAAATTCGCA 301 CTGGGTGAGG AAAGTACTAT TGTCGCTTCC AAAATTGCTG TCAACCCCAG AGTTGAAGGT 361 CAGTCTTTCC CACTTGTCCT AGATGGGCGA GATCTGAAGT TGCAATCAGT TAAGATCAAC 421 GGCAATCCGC TGAAGGAGGA AGATTTCCTC GTGGACTCGC GCCACCTGAC TCTGAAATCC 481 CCTCCAAGTA GCAAATTCAC CTTGGAGATT GTGACAGAAA TACATCCTCA GAAGAACACA 541 TCCTTAGAGG GTCTTTTCCA GTCATCATGG AATTTCTGCA CCCAATGTGA GGCTGAGGGT 601 TTCCGTTAGA TTACGTTCTA TCAGGATCGC CCTGACTTTA TGGCAAAATA CACTTTGT Predicted gene structure (within gDNA segment 98353 to 95287): Exon 1 97591 97514 ( 78 n); cDNA 19 96 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 97 141 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 142 282 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 283 358 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 359 435 ( 77 n); score: 1.000 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 6 96525 96412 ( 114 n); cDNA 436 549 ( 114 n); score: 0.991 Intron 6 96411 96303 ( 109 n); Pd: 0.923 (s: 1.00), Pa: 0.984 (s: 0.94) Exon 7 96302 96228 ( 75 n); cDNA 550 624 ( 75 n); score: 0.947 Intron 7 96227 96144 ( 84 n); Pd: 0.999 (s: 0.98), Pa: 0.983 (s: 0) Exon 8 96143 96113 ( 31 n); cDNA 625 655 ( 31 n); score: 0.968 MATCH C08SLe0084H03.1- SGN-E554726+ 0.991 637 0.968 C PGS_C08SLe0084H03.1-_SGN-E554726+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96113) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 78 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 96 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 96 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 125 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 141 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 149 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 209 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 269 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 282 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 306 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 358 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 358 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 358 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 358 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 381 GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAGGTACCT 96632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAG...... 435 ATATCAGAGT CTTGCTCCTA GAACGTTCAA AGATGTCTTT TAATTTTTAC ATGATATGTC 96572 .......... .......... .......... .......... .......... .......... 435 ACATGATGTT ACTTTTACTC ATACATGATT CACCTAATGT GTTTAGGAGG AAGATTTCCA 96512 |||| ||||||||| .......... .......... .......... .......... ......GAGG AAGATTTCCT 449 CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 96452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 509 TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG GTGAAATAGA AGGGCAGGAT 96392 |||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG .......... .......... 549 TTTGTCTTAT TTATAATTTT TTCTTGCACT TCGAATTTTA GTAACACTGT GAAATGGGTT 96332 .......... .......... .......... .......... .......... .......... 549 TATGGTGACA TTATCTATAT TTACTTCAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA 96272 | |||||| | | ||||||| || |||||||||| .......... .......... .........G GTCTTTTCCA GTCATCATGG AATTTCTGCA 580 CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAGGTATGC CTTATTTTTA 96212 |||||||||| |||||||||| |||||| ||| |||||||||| |||| CCCAATGTGA GGCTGAGGGT TTCCGTTAGA TTACGTTCTA TCAG...... .......... 624 TTGTTTGTCC TCTAGGATAT TATCGTTTTT TTTAAATGCT TGGTAATGGC TGAGATTTTC 96152 .......... .......... .......... .......... .......... .......... 624 TCCATTAGGA TCGCCCTGAC ATTATGGCAA AATACACTT 96113 || |||||||||| ||||||||| ||||||||| ........GA TCGCCCTGAC TTTATGGCAA AATACACTT 655 hqPGS_C08SLe0084H03.1-_SGN-E554726+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96113) ******************************************************************************** EST sequence 207 +strand 345 n (File: SGN-E556932+) 1 TTCCCAAAGG GGTTTGGCCC CCCTAGGGGG GGCCCCGAAA CCGTTTTCCC CCAAAGAGGT 61 GAATGTTAAT CTTTCCCGGC CGTCCTTTAT AAAAAAGATC TGAAGTTGCA ATCAGTTAAG 121 ATCAACGGCA ATCCGCTGAA GGAGGAAGAT TTCCTCGTGG ACTCACGCCA CCTGACTCTG 181 AAATCCCCTC CAAGTAGCAA ATTCACCTTG GAGATTGTGA CAGAAATACA TCCTCAAAAG 241 AACACATCCT TAGAGGGTCT TTACCAGTCA TCATGGAATT TCCGCACCCA ATGTGAGGCT 301 GAAGGTTTCC GTAAGATTAC CTTCTATCAT GATCGCCCTG ACATT Predicted gene structure (within gDNA segment 98233 to 95378): Exon 1 96714 96638 ( 77 n); cDNA 65 141 ( 77 n); score: 0.831 Intron 1 96637 96526 ( 112 n); Pd: 0.978 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 96525 96412 ( 114 n); cDNA 142 255 ( 114 n); score: 0.974 Intron 2 96411 96303 ( 109 n); Pd: 0.923 (s: 0.98), Pa: 0.984 (s: 0.92) Exon 3 96302 96228 ( 75 n); cDNA 256 330 ( 75 n); score: 0.920 Intron 3 96227 96144 ( 84 n); Pd: 0.999 (s: 0.92), Pa: 0.983 (s: 0) Exon 4 96143 96129 ( 15 n); cDNA 331 345 ( 15 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E556932+ 0.917 281 0.814 C PGS_C08SLe0084H03.1-_SGN-E556932+ (96714 96638,96525 96412,96302 96228,96143 96129) Alignment (genomic DNA sequence = upper lines): GTCAGTCTTT CCCACTTGTC CTAGATGGGC GAGATCTGAA GTTGCAATCA GTTAAGATCA 96655 || | ||||| ||| ||| || || ||||||||| |||||||||| |||||||||| GTTAATCTTT CCCGGCCGTC CTTTATAAAA AAGATCTGAA GTTGCAATCA GTTAAGATCA 124 ACGGCAATCC GCTGAAGGTA CCTATATCAG AGTCTTGCTC CTAGAACGTT CAAAGATGTC 96595 |||||||||| ||||||| ACGGCAATCC GCTGAAG... .......... .......... .......... .......... 141 TTTTAATTTT TACATGATAT GTCACATGAT GTTACTTTTA CTCATACATG ATTCACCTAA 96535 .......... .......... .......... .......... .......... .......... 141 TGTGTTTAGG AGGAAGATTT CCACGTGGAC TCGCGCCACC TGACTCTGAA ATCCCCTCCA 96475 | |||||||||| || ||||||| || ||||||| |||||||||| |||||||||| .........G AGGAAGATTT CCTCGTGGAC TCACGCCACC TGACTCTGAA ATCCCCTCCA 192 AGTAGCAAAT TCACCTTGGA GATTGTGACA GAAATACATC CTCAGAAGAA CACATCCTTA 96415 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| AGTAGCAAAT TCACCTTGGA GATTGTGACA GAAATACATC CTCAAAAGAA CACATCCTTA 252 GAGGTGAAAT AGAAGGGCAG GATTTTGTCT TATTTATAAT TTTTTCTTGC ACTTCGAATT 96355 ||| GAG....... .......... .......... .......... .......... .......... 255 TTAGTAACAC TGTGAAATGG GTTTATGGTG ACATTATCTA TATTTACTTC AGGGTCTTTA 96295 |||||||| .......... .......... .......... .......... .......... ..GGTCTTTA 263 CAAGTCATCA GGGAATTTCT GCACCCAATG TGAGGCTGAG GGTTTCCGTA AGATTACGTT 96235 | |||||||| |||||||| |||||||||| ||||||||| |||||||||| ||||||| || CCAGTCATCA TGGAATTTCC GCACCCAATG TGAGGCTGAA GGTTTCCGTA AGATTACCTT 323 CTATCAGGTA TGCCTTATTT TTATTGTTTG TCCTCTAGGA TATTATCGTT TTTTTTAAAT 96175 |||||| CTATCAT... .......... .......... .......... .......... .......... 330 GCTTGGTAAT GGCTGAGATT TTCTCCATTA GGATCGCCCT GACATT 96129 ||||||||| |||||| .......... .......... .......... .GATCGCCCT GACATT 345 hqPGS_C08SLe0084H03.1-_SGN-E556932+ (96714 96638,96525 96412,96302 96228,96143 96129) ******************************************************************************** EST sequence 208 +strand 635 n (File: SGN-E555929+) 1 AAATCATCAT CTATAGAGTT TCAGGCAAGT TGCCGTGTTA CTTCAGTTGG GCGCTCGAGG 61 GATATCTGCA GATACAAAAA ATACCTTACT TCAGAGGTTG CGCATTGGAG GAGGTGTCAA 121 ATCCCGCGTT TTCCATTAGT TCAACCTAGA AGAATTGACC GGAGATTAAT CTGTTCAGTT 181 GCAACTGAAC CTCTACCAAA AGAAGTTGAA GAATCCAAGA TGGAAGCACC AAAGGAAATC 241 TTTCTGAAGG ATTACAAACA ACCTGATTAC TATTTTGACA CGTTGGATCT GAAATTCGCA 301 CTGGGTGAGG AAAGTACTAT TGTCGCTTCC AAAATTGCTG TCAACCCCAG AGTTGAAGGT 361 CAGTCTTTCC CACTTGTCCT AGATGGGCGA GATCTGAAGT TGCAATCAGT TAAGATCAAC 421 GGCAATCCGC TGAAGGAGGA AGATTTCCTC GTGGACTCGC GCCACCTGAC TCTGAAATCC 481 CCTCCAAGTA GCAAATTCAC CTTGGAGATT GTGACAGACA TACATCCTCA GAAGAACACA 541 TCCTTAGAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA CCCAATGTGA GGCTGAGGGT 601 TTCCGTAAGA TTACGTTCTA TCAGGATCGC CCTGA Predicted gene structure (within gDNA segment 98353 to 95517): Exon 1 97591 97514 ( 78 n); cDNA 19 96 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 97 141 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 142 282 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 283 358 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 359 435 ( 77 n); score: 1.000 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 6 96525 96412 ( 114 n); cDNA 436 549 ( 114 n); score: 0.982 Intron 6 96411 96303 ( 109 n); Pd: 0.923 (s: 0.98), Pa: 0.984 (s: 1.00) Exon 7 96302 96228 ( 75 n); cDNA 550 624 ( 75 n); score: 1.000 Intron 7 96227 96144 ( 84 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 0) Exon 8 96143 96133 ( 11 n); cDNA 625 635 ( 11 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E555929+ 0.996 617 0.972 C PGS_C08SLe0084H03.1-_SGN-E555929+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96133) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 78 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 96 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 96 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 125 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 141 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 149 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 209 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 269 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 282 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 306 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 358 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 358 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 358 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 358 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 381 GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAGGTACCT 96632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAG...... 435 ATATCAGAGT CTTGCTCCTA GAACGTTCAA AGATGTCTTT TAATTTTTAC ATGATATGTC 96572 .......... .......... .......... .......... .......... .......... 435 ACATGATGTT ACTTTTACTC ATACATGATT CACCTAATGT GTTTAGGAGG AAGATTTCCA 96512 |||| ||||||||| .......... .......... .......... .......... ......GAGG AAGATTTCCT 449 CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 96452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGACTCG CGCCACCTGA CTCTGAAATC CCCTCCAAGT AGCAAATTCA CCTTGGAGAT 509 TGTGACAGAA ATACATCCTC AGAAGAACAC ATCCTTAGAG GTGAAATAGA AGGGCAGGAT 96392 ||||||||| |||||||||| |||||||||| |||||||||| TGTGACAGAC ATACATCCTC AGAAGAACAC ATCCTTAGAG .......... .......... 549 TTTGTCTTAT TTATAATTTT TTCTTGCACT TCGAATTTTA GTAACACTGT GAAATGGGTT 96332 .......... .......... .......... .......... .......... .......... 549 TATGGTGACA TTATCTATAT TTACTTCAGG GTCTTTACAA GTCATCAGGG AATTTCTGCA 96272 | |||||||||| |||||||||| |||||||||| .......... .......... .........G GTCTTTACAA GTCATCAGGG AATTTCTGCA 580 CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAGGTATGC CTTATTTTTA 96212 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCCAATGTGA GGCTGAGGGT TTCCGTAAGA TTACGTTCTA TCAG...... .......... 624 TTGTTTGTCC TCTAGGATAT TATCGTTTTT TTTAAATGCT TGGTAATGGC TGAGATTTTC 96152 .......... .......... .......... .......... .......... .......... 624 TCCATTAGGA TCGCCCTGA 96133 || ||||||||| ........GA TCGCCCTGA 635 hqPGS_C08SLe0084H03.1-_SGN-E555929+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96133) ******************************************************************************** EST sequence 203 +strand 212 n (File: SGN-E554729+) 1 TTTCCCACTT GTCCTAGATG GGCGAGATCT GAAGTTGCAA TCAGTGAAGA TCTTCGGCAA 61 TCCGCTGAAG GAGGAAGATT TCCTCGTGGA CTCGCGCCAC CTGACTCTGA AATCCCCTCC 121 AAGTAGCAAA TTCACCTTGG AGATTGTGAC AGAAATACAT CCTCAGAAGA ACACATCCTT 181 AGAGGGTCTT TACAAGTCAT CATGGAATTT CT Predicted gene structure (within gDNA segment 97307 to 95531): Exon 1 96707 96638 ( 70 n); cDNA 1 70 ( 70 n); score: 0.957 Intron 1 96637 96526 ( 112 n); Pd: 0.978 (s: 0.94), Pa: 0.999 (s: 0.98) Exon 2 96525 96412 ( 114 n); cDNA 71 184 ( 114 n); score: 0.991 Intron 2 96411 96303 ( 109 n); Pd: 0.923 (s: 1.00), Pa: 0.984 (s: 0) Exon 3 96302 96275 ( 28 n); cDNA 185 212 ( 28 n); score: 0.964 MATCH C08SLe0084H03.1- SGN-E554729+ 0.978 212 1.000 C PGS_C08SLe0084H03.1-_SGN-E554729+ (96707 96638,96525 96412,96302 96275) Alignment (genomic DNA sequence = upper lines): TTTCCCACTT GTCCTAGATG GGCGAGATCT GAAGTTGCAA TCAGTTAAGA TCAACGGCAA 96648 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| || |||||| TTTCCCACTT GTCCTAGATG GGCGAGATCT GAAGTTGCAA TCAGTGAAGA TCTTCGGCAA 60 TCCGCTGAAG GTACCTATAT CAGAGTCTTG CTCCTAGAAC GTTCAAAGAT GTCTTTTAAT 96588 |||||||||| TCCGCTGAAG .......... .......... .......... .......... .......... 70 TTTTACATGA TATGTCACAT GATGTTACTT TTACTCATAC ATGATTCACC TAATGTGTTT 96528 .......... .......... .......... .......... .......... .......... 70 AGGAGGAAGA TTTCCACGTG GACTCGCGCC ACCTGACTCT GAAATCCCCT CCAAGTAGCA 96468 |||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ..GAGGAAGA TTTCCTCGTG GACTCGCGCC ACCTGACTCT GAAATCCCCT CCAAGTAGCA 128 AATTCACCTT GGAGATTGTG ACAGAAATAC ATCCTCAGAA GAACACATCC TTAGAGGTGA 96408 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATTCACCTT GGAGATTGTG ACAGAAATAC ATCCTCAGAA GAACACATCC TTAGAG.... 184 AATAGAAGGG CAGGATTTTG TCTTATTTAT AATTTTTTCT TGCACTTCGA ATTTTAGTAA 96348 .......... .......... .......... .......... .......... .......... 184 CACTGTGAAA TGGGTTTATG GTGACATTAT CTATATTTAC TTCAGGGTCT TTACAAGTCA 96288 ||||| |||||||||| .......... .......... .......... .......... .....GGTCT TTACAAGTCA 199 TCAGGGAATT TCT 96275 ||| |||||| ||| TCATGGAATT TCT 212 hqPGS_C08SLe0084H03.1-_SGN-E554729+ (96707 96638,96525 96412,96302 96275) ******************************************************************************** EST sequence 254 +strand 594 n (File: SGN-E330303+) 1 ATAAAAAGAT TACAGCAGAA GGAGTTTTGT GTTCTTGTTG ATCAACCCTT TTGCAAATCA 61 TCATCAATAG AGTTTCAGGC AAGTTGCCGT GTTACTTCAG TTGGGCGCTC GAGGGATATC 121 TGCAGATACA AAAAATACCT TACTTCAGAG GTTGCGCATT GGAGGAGGTG TCAAATCCCG 181 CGTTTTCCAT TAGTTCAACC TAGAAGAATT GACCGGAGAT TAATCTGTTC AGTTGCAACT 241 GAACCTCTAC CAAAAGAAGT TGAAGAATCC AAGATGGAAG CACCAAAGGA AATCTTTCTG 301 AAGGATTACA AACAACCTGA TTACTATTTT GACACGTTGG ATCTGAAATT CGCACTGGGT 361 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTCAGTCT 421 TTCCCACTTG TCCTAGATGG GCGAGATCTG AAGTTGCAAT CAGTTAAGAT CAACGGCAAT 481 CCGCTGAAGG AGGAAGATTT CCTCGTGGAC TCGCGCCACC TGACTCTGAA ATCCCCTCCA 541 AGTAGCAAAT TCACCTTGGA GATTGTGACA GAAATACATC CTCAGAAGAA CACA Predicted gene structure (within gDNA segment 99497 to 95811): Exon 1 98780 98709 ( 72 n); cDNA 1 72 ( 72 n); score: 0.986 Intron 1 98708 97592 (1117 n); Pd: 0.998 (s: 1.00), Pa: 0.864 (s: 1.00) Exon 2 97591 97514 ( 78 n); cDNA 73 150 ( 78 n); score: 1.000 Intron 2 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 97380 97336 ( 45 n); cDNA 151 195 ( 45 n); score: 1.000 Intron 3 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 97239 97099 ( 141 n); cDNA 196 336 ( 141 n); score: 1.000 Intron 4 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 5 97015 96940 ( 76 n); cDNA 337 412 ( 76 n); score: 1.000 Intron 5 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 6 96714 96638 ( 77 n); cDNA 413 489 ( 77 n); score: 1.000 Intron 6 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 7 96525 96421 ( 105 n); cDNA 490 594 ( 105 n); score: 0.990 MATCH C08SLe0084H03.1- SGN-E330303+ 0.996 594 1.000 C PGS_C08SLe0084H03.1-_SGN-E330303+ (98780 98709,97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96421) Alignment (genomic DNA sequence = upper lines): ATAAAAAGAT TATAGCAGAA GGAGTTTTGT GTTCTTGTTG ATCAACCCTT TTGCAAATCA 98721 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAAAGAT TACAGCAGAA GGAGTTTTGT GTTCTTGTTG ATCAACCCTT TTGCAAATCA 60 TCATCAATAG AGGTAAAACC ACTTATACTA AATTTTGATT TTTTTTAGAT TTATCTTCTT 98661 |||||||||| || TCATCAATAG AG........ .......... .......... .......... .......... 72 TTTTTTTTTT GATTTTAGAT GTCCATTTTA TTGATTTTTT CTAGTCCATG TAATTGGATT 98601 .......... .......... .......... .......... .......... .......... 72 ATCCATATCT TCCAAACCCT TTTAAGAGCC ATTGCTTCTC TTATTTCATT TGGCTTAGTA 98541 .......... .......... .......... .......... .......... .......... 72 GTTTGTAGGA GTAGGAATAG TCTTTTCTTG ATCTGAGGGG TTTTTGGTTT GGTTTTCCTG 98481 .......... .......... .......... .......... .......... .......... 72 AATCAAGTCA CTCGTGGTTG GCTTGTAACT TGTAAAGATT GAATCTTTAT ACATTTTTTC 98421 .......... .......... .......... .......... .......... .......... 72 ATCTGGGGTT GGCTTATATT TTGTGAAGAT TGAATCTTTA TAGGAATTTT CATCTGGGGT 98361 .......... .......... .......... .......... .......... .......... 72 TGGCTTATGT TTTGTGAAGA TTGGATCTTT ATAGGATTTA CTACCTGGGG TGGCCTTATA 98301 .......... .......... .......... .......... .......... .......... 72 TTTTGTAAAG ATTGAAGCTT TATTGGATTT TTTTAAAATC TGGGGTTGGC TTATGTTTTG 98241 .......... .......... .......... .......... .......... .......... 72 TGTAGAGTTG TATTTGGAAT GTTAGATTAG TGAACTATAT CTGGGTTTGG CTGTGAAGAT 98181 .......... .......... .......... .......... .......... .......... 72 TGAACCTAAC TATTATTATC AACAGTAGAT TACTTAGGTG TTGTGTGGTT TGCCGATGGC 98121 .......... .......... .......... .......... .......... .......... 72 TCGGTTGATT CTGCCTTGCA AGGGTTCGAG TTTGTCGAAG ACGTGTCTCT TGGGTTTGAT 98061 .......... .......... .......... .......... .......... .......... 72 CTCCAATGCT CCTGTGATTA TTCAACTCCC TTTTCTTCAT TCTATAAGCA AATAATGAAA 98001 .......... .......... .......... .......... .......... .......... 72 AACATGAAAG TGGTGTTGGT TATTTGAGAG TCAAGTAGTG GTACAGGTCT TGTGATAAAC 97941 .......... .......... .......... .......... .......... .......... 72 TGTGTGGTTT TGCCCCAACT GGACAACTGA TAATTTCCAT CTATATGGTT GTTGCTGTTT 97881 .......... .......... .......... .......... .......... .......... 72 CCTAATCAAG TACTTAGAGA GGCAGAGTCT TATCAATCCC AATCTTTGGC ACTGGGAAAG 97821 .......... .......... .......... .......... .......... .......... 72 GCTTATCCTT CTAGATTCTG GCTTTATGAA GTACTTATAA TTGGTTTTAG TCTTTCTCGC 97761 .......... .......... .......... .......... .......... .......... 72 ACACTTCTAT TTTAATTTGT TTGACTTTCA GACTTTCTTT AGGTGTCTTA TTTTTTCTCT 97701 .......... .......... .......... .......... .......... .......... 72 AGCTTCTTTC ATGTGTTACT GGTGTCTTTT GAAGTACATA TAGTTAGTGT AAGCTAGCTT 97641 .......... .......... .......... .......... .......... .......... 72 TTAATGACTT GATTTCGACA AAGAATTGAT TTCCATTCTC TCTCTGTAGT TTCAGGCAAG 97581 | |||||||||| .......... .......... .......... .......... .........T TTCAGGCAAG 83 TTGCCGTGTT ACTTCAGTTG GGCGCTCGAG GGATATCTGC AGATACAAAA AATACCTTAC 97521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCGTGTT ACTTCAGTTG GGCGCTCGAG GGATATCTGC AGATACAAAA AATACCTTAC 143 TTCAGAGGTT TGTGAATATT TCTTGGTTGG TTTCTGCCAT AAGCATTGAT TATCTGCTTT 97461 ||||||| TTCAGAG... .......... .......... .......... .......... .......... 150 TGGTTTTATG CATTGTCTTA CTTTGTCTAG TGAATGTTTT TCTCTTTTCT TATATTCAAT 97401 .......... .......... .......... .......... .......... .......... 150 TATTCTGCTT TTTTAACTAG GTTGCGCATT GGAGGAGGTG TCAAATCCCG CGTTTTCCAT 97341 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTTGCGCATT GGAGGAGGTG TCAAATCCCG CGTTTTCCAT 190 TAGTTGTAAG CAATTATGTC CAGATTATAA TGTACTTGCA TATTTTGTCA ATGATGTTTT 97281 ||||| TAGTT..... .......... .......... .......... .......... .......... 195 TCTATGCTGA CGTTTGTTTT GTTTGTTTGT ATGCTTCCCA GCAACCTAGA AGAATTGACC 97221 ||||||||| |||||||||| .......... .......... .......... .......... .CAACCTAGA AGAATTGACC 214 GGAGATTAAT CTGTTCAGTT GCAACTGAAC CTCTACCAAA AGAAGTTGAA GAATCCAAGA 97161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATTAAT CTGTTCAGTT GCAACTGAAC CTCTACCAAA AGAAGTTGAA GAATCCAAGA 274 TGGAAGCACC AAAGGAAATC TTTCTGAAGG ATTACAAACA ACCTGATTAC TATTTTGACA 97101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGCACC AAAGGAAATC TTTCTGAAGG ATTACAAACA ACCTGATTAC TATTTTGACA 334 CGGTATATCC CTTAATTCTT CTTCTATCTA GGTGAAGGTT TGGATTTTCT TCAAGTTTTG 97041 || CG........ .......... .......... .......... .......... .......... 336 TGTCTAAATC AAACTACTAT TTTAGTTGGA TCTGAAATTC GCACTGGGTG AGGAAAGTAC 96981 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....TTGGA TCTGAAATTC GCACTGGGTG AGGAAAGTAC 371 TATTGTCGCT TCCAAAATTG CTGTCAACCC CAGAGTTGAA GGTACATCTT GTTACCCCTT 96921 |||||||||| |||||||||| |||||||||| |||||||||| | TATTGTCGCT TCCAAAATTG CTGTCAACCC CAGAGTTGAA G......... .......... 412 CGGATTTTCT TATTTTTATC TGCAATTCGT TTCGCGAAAA AAATAAAACA GAGTCATCCA 96861 .......... .......... .......... .......... .......... .......... 412 CAGCACACTT TTTTCTTTCA CATTTCGCTG GGTTGATATA CTAAAACTAA ATGATACATA 96801 .......... .......... .......... .......... .......... .......... 412 CTTCTTGCCT GATTGAGGTT TCTCAAAACT TCAATAGTTG TATTTATTCC AGAACTCACA 96741 .......... .......... .......... .......... .......... .......... 412 GTGTGTTTCT AATATATCTT GAACAGGTCA GTCTTTCCCA CTTGTCCTAG ATGGGCGAGA 96681 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTCA GTCTTTCCCA CTTGTCCTAG ATGGGCGAGA 446 TCTGAAGTTG CAATCAGTTA AGATCAACGG CAATCCGCTG AAGGTACCTA TATCAGAGTC 96621 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCTGAAGTTG CAATCAGTTA AGATCAACGG CAATCCGCTG AAG....... .......... 489 TTGCTCCTAG AACGTTCAAA GATGTCTTTT AATTTTTACA TGATATGTCA CATGATGTTA 96561 .......... .......... .......... .......... .......... .......... 489 CTTTTACTCA TACATGATTC ACCTAATGTG TTTAGGAGGA AGATTTCCAC GTGGACTCGC 96501 ||||| |||||||| | |||||||||| .......... .......... .......... .....GAGGA AGATTTCCTC GTGGACTCGC 514 GCCACCTGAC TCTGAAATCC CCTCCAAGTA GCAAATTCAC CTTGGAGATT GTGACAGAAA 96441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACCTGAC TCTGAAATCC CCTCCAAGTA GCAAATTCAC CTTGGAGATT GTGACAGAAA 574 TACATCCTCA GAAGAACACA 96421 |||||||||| |||||||||| TACATCCTCA GAAGAACACA 594 hqPGS_C08SLe0084H03.1-_SGN-E330303+ (98780 98709,97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96421) ******************************************************************************** EST sequence 213 +strand 516 n (File: SGN-E557137+) 1 AAATCATCAT CAATAGAGTT TCAGGCAAGT TGCCGTGTTA CTTCAGTTGG GCGCTCGAGG 61 GATATCTGCA GATACAAAAA ATACCTTACT TCAGAGGTTG CGCATTGGAG GAGGTGTCAA 121 ATCCCGCGTT TTCCATTAGT TCAACCTAGA AGAATTGACC GGAGATTAAT CTGTTCAGTT 181 GCAACTGAAC CTCTACCAAA AGAAGTTGAA GAATCCAAGA TGGAAGCACC AAAGGAAATC 241 TTTCTGAAGG ATTACAAACA ACCTGATTAC TATTTTGACA CGTTGGATCT GAAATTCGCA 301 CTGGGTGAGG AAAGTACTAT TGTCGCTTCC AAAATTGCTG TCAACCCCAG AGTTGAAGGT 361 CAGTCTTTCC CACTTGTCCT AGATGGGCGA GATCTGAAGT TGCAATCAGT TAAGATCAAC 421 GGCAATCCGC TGAAGGAGGA AGATTTCCTC GTGGACTCGC GCCACCTTGA CTCTGAAATC 481 CCCTCCAAGT AGCAAATTCA CCTTGGAGAT TGTGAC Predicted gene structure (within gDNA segment 98353 to 95836): Exon 1 97591 97514 ( 78 n); cDNA 19 96 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 97 141 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 142 282 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 283 358 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 359 435 ( 77 n); score: 1.000 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 1.00), Pa: 0.999 (s: 0.93) Exon 6 96525 96446 ( 80 n); cDNA 436 516 ( 81 n); score: 0.956 MATCH C08SLe0084H03.1- SGN-E557137+ 0.992 497 0.963 C PGS_C08SLe0084H03.1-_SGN-E557137+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96446) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 78 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 96 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 96 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 125 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 141 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 149 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 209 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 269 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 282 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 306 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 358 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 358 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 358 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 358 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 381 GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAGGTACCT 96632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GATGGGCGAG ATCTGAAGTT GCAATCAGTT AAGATCAACG GCAATCCGCT GAAG...... 435 ATATCAGAGT CTTGCTCCTA GAACGTTCAA AGATGTCTTT TAATTTTTAC ATGATATGTC 96572 .......... .......... .......... .......... .......... .......... 435 ACATGATGTT ACTTTTACTC ATACATGATT CACCTAATGT GTTTAGGAGG AAGATTTCCA 96512 |||| ||||||||| .......... .......... .......... .......... ......GAGG AAGATTTCCT 449 CGTGGACTCG CGCCACC-TG ACTCTGAAAT CCCCTCCAAG TAGCAAATTC ACCTTGGAGA 96453 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| CGTGGACTCG CGCCACCTTG ACTCTGAAAT CCCCTCCAAG TAGCAAATTC ACCTTGGAGA 509 TTGTGAC 96446 ||||||| TTGTGAC 516 hqPGS_C08SLe0084H03.1-_SGN-E557137+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96446) ******************************************************************************** EST sequence 200 +strand 473 n (File: SGN-E554667+) 1 AAATCATCAT CAATAGAGTT TCAGGCAAGT TGCCTGTGTT ACTTCAGTTG GGCGCTCGAG 61 GGATATCTGC AGATACAAAA ATTACCTTAC TTCAGAGGTT GCGCATTGGA GGAGGTGTCA 121 AATCCCGCGT TTTCCATTAG TTCAACCTAG AAGAATTGAC CGGAGATTAA TCTGTTCAGT 181 TGCAACTGAA CCTCTACCAA AAGAAGTTGA AGAATCCTAG ATGGAAGCAC CATAGGAAAT 241 CTTTCTGAAG GATTACAAAC CACCTGATTA CTATTTTGTC TCGTTGGATC TGATATTCGC 301 ACTGGGTGAG GAAAGTACTA TTGTCGCTTC CGAAATTGCT GTCTACCCCA GAGGTGAAGG 361 TCAGTCTTTC CCACTTGTCC TAGATGGGCG AGATCTGAAG TTGCAATCAG TTAAGATCAA 421 CGGTTATCCG CTGAATGAGG AAGATTTCCT CGTGGACTCG CGCCACCTGA CTC Predicted gene structure (within gDNA segment 98353 to 95541): Exon 1 97591 97514 ( 78 n); cDNA 19 97 ( 79 n); score: 0.955 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 0.98), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 98 142 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 143 283 ( 141 n); score: 0.965 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 0.94), Pa: 0.890 (s: 0.96) Exon 4 97015 96940 ( 76 n); cDNA 284 359 ( 76 n); score: 0.947 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 0.94), Pa: 0.993 (s: 1.00) Exon 5 96714 96638 ( 77 n); cDNA 360 436 ( 77 n); score: 0.961 Intron 5 96637 96526 ( 112 n); Pd: 0.978 (s: 0.94), Pa: 0.999 (s: 0) Exon 6 96525 96489 ( 37 n); cDNA 437 473 ( 37 n); score: 0.973 MATCH C08SLe0084H03.1- SGN-E554667+ 0.958 454 0.960 C PGS_C08SLe0084H03.1-_SGN-E554667+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96489) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCC-GTG TTACTTCAGT TGGGCGCTCG AGGGATATCT GCAGATACAA 97533 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCTGTG TTACTTCAGT TGGGCGCTCG AGGGATATCT GCAGATACAA 78 AAAATACCTT ACTTCAGAGG TTTGTGAATA TTTCTTGGTT GGTTTCTGCC ATAAGCATTG 97473 ||| |||||| ||||||||| AAATTACCTT ACTTCAGAG. .......... .......... .......... .......... 97 ATTATCTGCT TTTGGTTTTA TGCATTGTCT TACTTTGTCT AGTGAATGTT TTTCTCTTTT 97413 .......... .......... .......... .......... .......... .......... 97 CTTATATTCA ATTATTCTGC TTTTTTAACT AGGTTGCGCA TTGGAGGAGG TGTCAAATCC 97353 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTTGCGCA TTGGAGGAGG TGTCAAATCC 125 CGCGTTTTCC ATTAGTTGTA AGCAATTATG TCCAGATTAT AATGTACTTG CATATTTTGT 97293 |||||||||| ||||||| CGCGTTTTCC ATTAGTT... .......... .......... .......... .......... 142 CAATGATGTT TTTCTATGCT GACGTTTGTT TTGTTTGTTT GTATGCTTCC CAGCAACCTA 97233 ||||||| .......... .......... .......... .......... .......... ...CAACCTA 149 GAAGAATTGA CCGGAGATTA ATCTGTTCAG TTGCAACTGA ACCTCTACCA AAAGAAGTTG 97173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAATTGA CCGGAGATTA ATCTGTTCAG TTGCAACTGA ACCTCTACCA AAAGAAGTTG 209 AAGAATCCAA GATGGAAGCA CCAAAGGAAA TCTTTCTGAA GGATTACAAA CAACCTGATT 97113 |||||||| | |||||||||| ||| |||||| |||||||||| |||||||||| | |||||||| AAGAATCCTA GATGGAAGCA CCATAGGAAA TCTTTCTGAA GGATTACAAA CCACCTGATT 269 ACTATTTTGA CACGGTATAT CCCTTAATTC TTCTTCTATC TAGGTGAAGG TTTGGATTTT 97053 ||||||||| | || ACTATTTTGT CTCG...... .......... .......... .......... .......... 283 CTTCAAGTTT TGTGTCTAAA TCAAACTACT ATTTTAGTTG GATCTGAAAT TCGCACTGGG 96993 ||| ||||||| || |||||||||| .......... .......... .......... .......TTG GATCTGATAT TCGCACTGGG 306 TGAGGAAAGT ACTATTGTCG CTTCCAAAAT TGCTGTCAAC CCCAGAGTTG AAGGTACATC 96933 |||||||||| |||||||||| ||||| |||| ||||||| || ||||||| || ||| TGAGGAAAGT ACTATTGTCG CTTCCGAAAT TGCTGTCTAC CCCAGAGGTG AAG....... 359 TTGTTACCCC TTCGGATTTT CTTATTTTTA TCTGCAATTC GTTTCGCGAA AAAAATAAAA 96873 .......... .......... .......... .......... .......... .......... 359 CAGAGTCATC CACAGCACAC TTTTTTCTTT CACATTTCGC TGGGTTGATA TACTAAAACT 96813 .......... .......... .......... .......... .......... .......... 359 AAATGATACA TACTTCTTGC CTGATTGAGG TTTCTCAAAA CTTCAATAGT TGTATTTATT 96753 .......... .......... .......... .......... .......... .......... 359 CCAGAACTCA CAGTGTGTTT CTAATATATC TTGAACAGGT CAGTCTTTCC CACTTGTCCT 96693 || |||||||||| |||||||||| .......... .......... .......... ........GT CAGTCTTTCC CACTTGTCCT 381 AGATGGGCGA GATCTGAAGT TGCAATCAGT TAAGATCAAC GGCAATCCGC TGAAGGTACC 96633 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| |||| AGATGGGCGA GATCTGAAGT TGCAATCAGT TAAGATCAAC GGTTATCCGC TGAAT..... 436 TATATCAGAG TCTTGCTCCT AGAACGTTCA AAGATGTCTT TTAATTTTTA CATGATATGT 96573 .......... .......... .......... .......... .......... .......... 436 CACATGATGT TACTTTTACT CATACATGAT TCACCTAATG TGTTTAGGAG GAAGATTTCC 96513 ||| |||||||||| .......... .......... .......... .......... .......GAG GAAGATTTCC 449 ACGTGGACTC GCGCCACCTG ACTC 96489 ||||||||| |||||||||| |||| TCGTGGACTC GCGCCACCTG ACTC 473 hqPGS_C08SLe0084H03.1-_SGN-E554667+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96489) ******************************************************************************** EST sequence 206 +strand 402 n (File: SGN-E311568+) 1 ATCAATAGAG TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG 61 CAGATACAAA AAATACCTTA CTTCAGAGGT TGCGCATTGG AGGAGGTGTC AAATCCCGCG 121 TTTTCCATTA GTTCAACCTA GAAGAATTGA CCGGAGATTA ATCTGTTCAG TTGCAACTGA 181 ACCTCTACCA AAAGAAGTTG AAGAATCCAA GATGGAAGCA CCAAAGGAAA TCTTTCTGAA 241 GGATTACAAA CAACCTGATT ACTATTTTGA CACGTTGGAT CTGAAATTCG CACTGGGTGA 301 GGAAAGTACT ATTGTCGCTT CCAAAATTGC TGTCAACCCC AGAGTTGAAG GTCAGTCTTT 361 CCCACTTGTC CTAGATGGGC GAGATCTGAA GTTGCAATCA GT Predicted gene structure (within gDNA segment 98273 to 96053): Exon 1 97591 97514 ( 78 n); cDNA 11 88 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 89 133 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 134 274 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 97015 96940 ( 76 n); cDNA 275 350 ( 76 n); score: 1.000 Intron 4 96939 96715 ( 225 n); Pd: 1.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 96714 96663 ( 52 n); cDNA 351 402 ( 52 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E311568+ 1.000 392 0.975 C PGS_C08SLe0084H03.1-_SGN-E311568+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96663) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 70 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 88 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 88 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 117 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 133 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 141 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 201 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 261 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 274 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTGAAATT CGCACTGGGT 96992 |||| |||||||||| |||||||||| .......... .......... .......... ......TTGG ATCTGAAATT CGCACTGGGT 298 GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AGGTACATCT 96932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GAGGAAAGTA CTATTGTCGC TTCCAAAATT GCTGTCAACC CCAGAGTTGA AG........ 350 TGTTACCCCT TCGGATTTTC TTATTTTTAT CTGCAATTCG TTTCGCGAAA AAAATAAAAC 96872 .......... .......... .......... .......... .......... .......... 350 AGAGTCATCC ACAGCACACT TTTTTCTTTC ACATTTCGCT GGGTTGATAT ACTAAAACTA 96812 .......... .......... .......... .......... .......... .......... 350 AATGATACAT ACTTCTTGCC TGATTGAGGT TTCTCAAAAC TTCAATAGTT GTATTTATTC 96752 .......... .......... .......... .......... .......... .......... 350 CAGAACTCAC AGTGTGTTTC TAATATATCT TGAACAGGTC AGTCTTTCCC ACTTGTCCTA 96692 ||| |||||||||| |||||||||| .......... .......... .......... .......GTC AGTCTTTCCC ACTTGTCCTA 373 GATGGGCGAG ATCTGAAGTT GCAATCAGT 96663 |||||||||| |||||||||| ||||||||| GATGGGCGAG ATCTGAAGTT GCAATCAGT 402 hqPGS_C08SLe0084H03.1-_SGN-E311568+ (97591 97514,97380 97336,97239 97099,97015 96940,96714 96663) ******************************************************************************** EST sequence 183 +strand 314 n (File: SGN-E338735+) 1 CCCCCGGGCT GCAGGCTTTT GCAAATCATC ATCAATATGA GTTTCAGGCA AGTTGCCGTG 61 TTACTTCAGT TGGGCGCTCG AGGGATATCT GCAGATACAA AAAATACCTT ACTTCAGAGG 121 TTGCGCATTG GAGGAGGTGT CAAATCCCGC GTTTTCCATT AGTTCAACCT AGAAGAATTG 181 ACCGGAGATT AATCTGTTCA GTTGCAACTG AACCTCTACC AAAAGAAGTT GAAGAATCCA 241 AGATGGAAGC ACCAAAGGAA ATCTTTCTGA AGGATTACAA ACAACCTGAT TACTATTTTG 301 ACACGTTGGA TCTG Predicted gene structure (within gDNA segment 98583 to 96399): Exon 1 97591 97514 ( 78 n); cDNA 42 119 ( 78 n); score: 1.000 Intron 1 97513 97381 ( 133 n); Pd: 0.975 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 97380 97336 ( 45 n); cDNA 120 164 ( 45 n); score: 1.000 Intron 2 97335 97240 ( 96 n); Pd: 0.966 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 97239 97099 ( 141 n); cDNA 165 305 ( 141 n); score: 1.000 Intron 3 97098 97016 ( 83 n); Pd: 0.971 (s: 1.00), Pa: 0.890 (s: 0) Exon 4 97015 97007 ( 9 n); cDNA 306 314 ( 9 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E338735+ 1.000 273 0.869 C PGS_C08SLe0084H03.1-_SGN-E338735+ (97591 97514,97380 97336,97239 97099,97015 97007) Alignment (genomic DNA sequence = upper lines): TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 97532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAGGCAA GTTGCCGTGT TACTTCAGTT GGGCGCTCGA GGGATATCTG CAGATACAAA 101 AAATACCTTA CTTCAGAGGT TTGTGAATAT TTCTTGGTTG GTTTCTGCCA TAAGCATTGA 97472 |||||||||| |||||||| AAATACCTTA CTTCAGAG.. .......... .......... .......... .......... 119 TTATCTGCTT TTGGTTTTAT GCATTGTCTT ACTTTGTCTA GTGAATGTTT TTCTCTTTTC 97412 .......... .......... .......... .......... .......... .......... 119 TTATATTCAA TTATTCTGCT TTTTTAACTA GGTTGCGCAT TGGAGGAGGT GTCAAATCCC 97352 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGCGCAT TGGAGGAGGT GTCAAATCCC 148 GCGTTTTCCA TTAGTTGTAA GCAATTATGT CCAGATTATA ATGTACTTGC ATATTTTGTC 97292 |||||||||| |||||| GCGTTTTCCA TTAGTT.... .......... .......... .......... .......... 164 AATGATGTTT TTCTATGCTG ACGTTTGTTT TGTTTGTTTG TATGCTTCCC AGCAACCTAG 97232 |||||||| .......... .......... .......... .......... .......... ..CAACCTAG 172 AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 97172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTGAC CGGAGATTAA TCTGTTCAGT TGCAACTGAA CCTCTACCAA AAGAAGTTGA 232 AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 97112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCAAG ATGGAAGCAC CAAAGGAAAT CTTTCTGAAG GATTACAAAC AACCTGATTA 292 CTATTTTGAC ACGGTATATC CCTTAATTCT TCTTCTATCT AGGTGAAGGT TTGGATTTTC 97052 |||||||||| ||| CTATTTTGAC ACG....... .......... .......... .......... .......... 305 TTCAAGTTTT GTGTCTAAAT CAAACTACTA TTTTAGTTGG ATCTG 97007 |||| ||||| .......... .......... .......... ......TTGG ATCTG 314 hqPGS_C08SLe0084H03.1-_SGN-E338735+ (97591 97514,97380 97336,97239 97099,97015 97007) ******************************************************************************** EST sequence 258 +strand 500 n (File: SGN-E331087+) 1 TAGTCTTTTC TTGATCTGAG GGGTTTTTGG TTTGGTTTTC CTGAATCAAG TCACTTGTGG 61 TTGGCTTGTA ACTTGTAAAG ATTGAATCTT TATACATTTT TTCATCTGGG GTTGGCTTAT 121 ATTTTGTGAA GATTGAATCT TTATAGGAAT TTTCATCTGG GGTTGGCTTA TGTTTTGTGA 181 AGATTGGATC TTTATAGGAT TTACTACCTG GGGTGGCCTT ATATTTTGTA AAGATTGAAG 241 CTTTATTGGA TTTTTTTAAA ATCTGGGGTT GGCTTATGTT TTGTGTAGAG TTGTATTTGG 301 AATGTTAGAT TAGTGAACTA TATCTGGGTT TGGCTGTGAA GATTGAACCT AACTATTATT 361 ATCAACAGTA GATTACTTAN GTGTTGTGTG GTTTGCCGAT GGCTCGGTTG ATTCTGCCTT 421 GCAAGGGTTC GAGTTTGTCG AAGACGTGTC TCTTGGGTTT GATCTCCAAT GCTCCTTTTC 481 AAGCAAGTTG CCGTGTTACT Predicted gene structure (within gDNA segment 99123 to 97198): Exon 1 98523 98048 ( 476 n); cDNA 1 476 ( 476 n); score: 0.996 Intron 1 98047 97592 ( 456 n); Pd: 0.971 (s: 1.00), Pa: 0.864 (s: 0) Exon 2 97591 97568 ( 24 n); cDNA 477 500 ( 24 n); score: 0.958 MATCH C08SLe0084H03.1- SGN-E331087+ 0.996 500 1.000 C PGS_C08SLe0084H03.1-_SGN-E331087+ (98523 98048,97591 97568) Alignment (genomic DNA sequence = upper lines): TAGTCTTTTC TTGATCTGAG GGGTTTTTGG TTTGGTTTTC CTGAATCAAG TCACTCGTGG 98464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TAGTCTTTTC TTGATCTGAG GGGTTTTTGG TTTGGTTTTC CTGAATCAAG TCACTTGTGG 60 TTGGCTTGTA ACTTGTAAAG ATTGAATCTT TATACATTTT TTCATCTGGG GTTGGCTTAT 98404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTTGTA ACTTGTAAAG ATTGAATCTT TATACATTTT TTCATCTGGG GTTGGCTTAT 120 ATTTTGTGAA GATTGAATCT TTATAGGAAT TTTCATCTGG GGTTGGCTTA TGTTTTGTGA 98344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGTGAA GATTGAATCT TTATAGGAAT TTTCATCTGG GGTTGGCTTA TGTTTTGTGA 180 AGATTGGATC TTTATAGGAT TTACTACCTG GGGTGGCCTT ATATTTTGTA AAGATTGAAG 98284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGGATC TTTATAGGAT TTACTACCTG GGGTGGCCTT ATATTTTGTA AAGATTGAAG 240 CTTTATTGGA TTTTTTTAAA ATCTGGGGTT GGCTTATGTT TTGTGTAGAG TTGTATTTGG 98224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTATTGGA TTTTTTTAAA ATCTGGGGTT GGCTTATGTT TTGTGTAGAG TTGTATTTGG 300 AATGTTAGAT TAGTGAACTA TATCTGGGTT TGGCTGTGAA GATTGAACCT AACTATTATT 98164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTAGAT TAGTGAACTA TATCTGGGTT TGGCTGTGAA GATTGAACCT AACTATTATT 360 ATCAACAGTA GATTACTTAG GTGTTGTGTG GTTTGCCGAT GGCTCGGTTG ATTCTGCCTT 98104 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACAGTA GATTACTTAN GTGTTGTGTG GTTTGCCGAT GGCTCGGTTG ATTCTGCCTT 420 GCAAGGGTTC GAGTTTGTCG AAGACGTGTC TCTTGGGTTT GATCTCCAAT GCTCCTGTGA 98044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCAAGGGTTC GAGTTTGTCG AAGACGTGTC TCTTGGGTTT GATCTCCAAT GCTCCT.... 476 TTATTCAACT CCCTTTTCTT CATTCTATAA GCAAATAATG AAAAACATGA AAGTGGTGTT 97984 .......... .......... .......... .......... .......... .......... 476 GGTTATTTGA GAGTCAAGTA GTGGTACAGG TCTTGTGATA AACTGTGTGG TTTTGCCCCA 97924 .......... .......... .......... .......... .......... .......... 476 ACTGGACAAC TGATAATTTC CATCTATATG GTTGTTGCTG TTTCCTAATC AAGTACTTAG 97864 .......... .......... .......... .......... .......... .......... 476 AGAGGCAGAG TCTTATCAAT CCCAATCTTT GGCACTGGGA AAGGCTTATC CTTCTAGATT 97804 .......... .......... .......... .......... .......... .......... 476 CTGGCTTTAT GAAGTACTTA TAATTGGTTT TAGTCTTTCT CGCACACTTC TATTTTAATT 97744 .......... .......... .......... .......... .......... .......... 476 TGTTTGACTT TCAGACTTTC TTTAGGTGTC TTATTTTTTC TCTAGCTTCT TTCATGTGTT 97684 .......... .......... .......... .......... .......... .......... 476 ACTGGTGTCT TTTGAAGTAC ATATAGTTAG TGTAAGCTAG CTTTTAATGA CTTGATTTCG 97624 .......... .......... .......... .......... .......... .......... 476 ACAAAGAATT GATTTCCATT CTCTCTCTGT AGTTTCAGGC AAGTTGCCGT GTTACT 97568 ||||| || |||||||||| |||||| .......... .......... .......... ..TTTCAAGC AAGTTGCCGT GTTACT 500 hqPGS_C08SLe0084H03.1-_SGN-E331087+ (98523 98048,97591 97568) ******************************************************************************** EST sequence 149 +strand 449 n (File: SGN-E248529+) 1 GGCTTAGTAG TTTGTAGGAG TAGGAATAGT CTTTGCTTGA TCGGAGGGGT TTTTGGTTTG 61 CTTTTCCCAA ATTAAGTCAC TTGGGGTTGG TTTGTAACTT GTAAAGATTG AATCTTTATA 121 GATTTTTTCA TCTGGGGTTG GCTTATATTT TGTGAAGATT GAATCTTTAT AGGAATTTTC 181 ATCTGGGGTT GGCTTATGTT TTGTGAAGAT TGAATCTTGT AAGATTTACT TACCTGGGGT 241 TGCCTTATAT TTTGTAAAGA TTGAAGCTTT ATAGGATTTT TTTGTTAATC TGGGGTTGGC 301 TTATGTTTTG TGAAGAGTTG TATTTAGAAT GTTAGATTAG TGAACTATAT CTGCCTTCTG 361 GGTTTGGCTG TGAAGATTGA ACCTAACTAT TATTATCAAC AGTAGATTAC TTAGGTCTTG 421 TGTGATTTGC CGATGGCTCG GTTGATTCT Predicted gene structure (within gDNA segment 99149 to 97499): Exon 1 98549 98109 ( 441 n); cDNA 1 449 ( 449 n); score: 0.899 MATCH C08SLe0084H03.1- SGN-E248529+ 0.899 441 0.982 C PGS_C08SLe0084H03.1-_SGN-E248529+ (98549 98109) Alignment (genomic DNA sequence = upper lines): GGCTTAGTAG TTTGTAGGAG TAGGAATAGT CTTTTCTTGA TCTGAGGGGT TTTTGGTTTG 98490 |||||||||| |||||||||| |||||||||| |||| ||||| || ||||||| |||||||||| GGCTTAGTAG TTTGTAGGAG TAGGAATAGT CTTTGCTTGA TCGGAGGGGT TTTTGGTTTG 60 GTTTTCCTGA ATCAAGTCAC TCGTGGTTGG CTTGTAACTT GTAAAGATTG AATCTTTATA 98430 |||||| | || ||||||| | | |||||| ||||||||| |||||||||| |||||||||| CTTTTCCCAA ATTAAGTCAC TTGGGGTTGG TTTGTAACTT GTAAAGATTG AATCTTTATA 120 CATTTTTTCA TCTGGGGTTG GCTTATATTT TGTGAAGATT GAATCTTTAT AGGAATTTTC 98370 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTTTCA TCTGGGGTTG GCTTATATTT TGTGAAGATT GAATCTTTAT AGGAATTTTC 180 ATCTGGGGTT GGCTTATGTT TTGTGAAGAT TGGATCTTTA TAGGATTTAC -TACCTGGGG 98311 |||||||||| |||||||||| |||||||||| || ||| || || ||||||| ||||||||| ATCTGGGGTT GGCTTATGTT TTGTGAAGAT TGAATC-TTG TAAGATTTAC TTACCTGGGG 239 TGGCCTTATA TTTTGTAAAG ATTGAAGCTT TATTGGATTT TTTT-AAAAT CTGGGGTTGG 98252 | |||||||| |||||||||| |||||||||| ||| |||||| |||| ||| |||||||||| TTGCCTTATA TTTTGTAAAG ATTGAAGCTT TATAGGATTT TTTTGTTAAT CTGGGGTTGG 299 CTTATGTTTT GTGTAGAGTT GTATTTGGAA TGTTAGATTA GTGAACTATA -------TCT 98199 |||||||||| ||| |||||| |||||| ||| |||||||||| |||||||||| ||| CTTATGTTTT GTGAAGAGTT GTATTTAGAA TGTTAGATTA GTGAACTATA TCTGCCTTCT 359 GGGTTTGGCT GTGAAGATTG AACCTAACTA TTATTATCAA CAGTAGATTA CTTAGGTGTT 98139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GGGTTTGGCT GTGAAGATTG AACCTAACTA TTATTATCAA CAGTAGATTA CTTAGGTCTT 419 GTGTGGTTTG CCGATGGCTC GGTTGATTCT 98109 ||||| |||| |||||||||| |||||||||| GTGTGATTTG CCGATGGCTC GGTTGATTCT 449 hqPGS_C08SLe0084H03.1-_SGN-E248529+ (98549 98109) ******************************************************************************** EST sequence 51 -strand 858 n (File: SGN-E540411-) 1 TACATCAGTA TACGCGATTA ATCGCATGGT GAATACAGAA ACAAAGTTAG GGGATTTGTG 61 TTACCCTCTG GGGTCCAACT CATATTGGCA ACAATGTTAG TGCATCATGA TACTGAAATA 121 TGGGGAGATG ATGCAATGGA GTTTATGCCA GAGAGATTTA GTGAAGGAAT ATCAAAAGCA 181 ACAAAAGGAC AAGTTGTATT TTTTCCATTT AGTTGGGGTC CAAGAATATG TATTGGGCAA 241 AATTTTGCTA TGTTAGAGGC AAAAATGGCA ATGGTCATGA TTCTAAAACA TTATGCATTT 301 GAACTCTCTC CATCTTATGC TCATGCTCCT CACCCATTGT TGCTTCAACC TCAATATGGT 361 GCTCAATTGA TCATGCACAA GTTGTAGAAG TGGTTATCAC GTGTTGTCTT TTGAATCATG 421 TTATATCCTT TATTTATTGT TGGGATAATG TCCAAGTACC CCCTTAGCCT ATGTCCAAAA 481 TCTCAGAGAT ACACTTATAC CATACTAAGA TCTTATTACC CCCTGAACTT ATTTATTAAT 541 AATTTTTTAC CCCTTTTAGA CCTACGTGGC ACTATCTTGT GGGCCCAATG GTTGTTGACT 601 TTTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 661 TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 721 GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGTTCTTT AATTATAGTT CAAGTGAAGT 781 CATATGTTGT TTTGTATAAG ACTGGAGAAT TTTATAATAA TAATATTAGT GTACTTTATG 841 TTTATGAGAA AAAAAAAA Predicted gene structure (within gDNA segment 110654 to 102413): Exon 1 104821 104504 ( 318 n); cDNA 419 736 ( 318 n); score: 0.847 PPA cDNA 847 858 MATCH C08SLe0084H03.1- SGN-E540411- 0.847 318 0.371 C PGS_C08SLe0084H03.1-_SGN-E540411- (104821 104504) Alignment (genomic DNA sequence = upper lines): TGTTCTACTC ATAATTTATT GGAGGGATAA TGCCCAAGTA CCGGCTCAAT CTATGCTCGA 104762 |||| || | | ||||||| | ||||||| || ||||||| || || | ||||| | | TGTTATATCC TTTATTTATT GTTGGGATAA TGTCCAAGTA CCCCCTTAGC CTATGTCCAA 478 AATTTCAGAG ACACACTTAT ACTATACTAA GGTCCTATTA CCCCTTTAAC TTATTTTATT 104702 ||| |||||| | |||||||| || ||||||| | || ||||| |||| | ||| ||| |||||| AATCTCAGAG ATACACTTAT ACCATACTAA GATCTTATTA CCCCCTGAAC TTA-TTTATT 537 AATAATTTTT TACCCCTTTT TAGCTTACGT GGCACTATCT TGTGGGCCCA ACGATGGTTG 104642 |||||||||| |||||||||| | ||||| |||||||||| |||||||||| | | | |||| AATAATTTTT TACCCCTTTT AGACCTACGT GGCACTATCT TGTGGGCCCA ATGGTTGTTG 597 ATTTTTTTTC TTCGAACTAG TGCCACGTAG GCT-AAAATG GGCAGAAAAT TACATATAAA 104583 | ||||||| || |||||| |||||||||| ||| |||| | || ||||||| ||| |||||| ACTTTTTTT- TT-AAACTAG TGCCACGTAG GCTAAAAAGG GGTAGAAAAT TACTTATAAA 655 ATAAGTTCA- GGGGGTAATA GGACCTTAGT ATAGTATAAG TGTGTCTCTG GGATTTCGAG 104524 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||| | ATAAGTTCAG GGGGGTAATA GGACCTTAGT ATAGTATAAG TGTGTCTCTG GAATTTCGGG 715 CATAGGTTGA -GGAGTACTT G 104504 |||||||||| || |||||| | CATAGGTTGA GGGGGTACTT G 736 hqPGS_C08SLe0084H03.1-_SGN-E540411- (104821 104504) ******************************************************************************** EST sequence 53 -strand 674 n (File: SGN-E393897-) 1 TTTTTGGGGA ATTTTCAGGG ACCCAAAGGG AGTCTTTACT GGGAGGGTGT GTGGAAAGTG 61 AGGGTAGAGC TCCCAGATGC CTATCCTTAC AAGTCACCAT CCATTGGTTT TGTTAACAAG 121 ATTTACCATC CGAATGTGGA TGAGATGTCA GGTTCAGTCT GCTTAGATGT TATCAATCAA 181 ACCTGGAGCC CCATGTTTGA TCTTGTAAAT GTTTTTGAAG TGTTCCTTCC CCAACTCCTT 241 TTATATCCTA ACCCATCGGA TCCCCTGAAT GGAGAAGCTG CAGCTCTCAT GATGCGCGAT 301 CGTACTACTT ATGATCAAAA GGTGAAAGAG TATTGCGAGA AATACGCTAA GAAAGAAGAC 361 GCTGGGGCTC CACCTGAAGA AAAATCTAGT GATGAAGAGT TGAGTGAAGA AGAAAATGTC 421 TCCAGTGATG ATGAACTTGC TGGAAAAGCA GATCCCTAAG GGTTTAGCAG ATCATGGACA 481 ATATTATAAC CCCTTCAATG TTTGTACATG ATATCAACTT CTAAACCTGT CTTGTCCATG 541 GTTTACTTGA AGAAAATAGT TCTATTTCTT CTGTCAATCT GAATTGTACT GTTATTGTGG 601 TTACATTCTG TCCTGATTCC ATAAAAGTCC ATCTGAACCT TTAAACTTAA AAAAAAAAAA 661 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 116000 to 112663): Exon 1 115214 115200 ( 15 n); cDNA 314 328 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 113824 113504 ( 321 n); cDNA 329 649 ( 321 n); score: 1.000 PPA cDNA 650 674 MATCH C08SLe0084H03.1- SGN-E393897- 1.000 336 0.499 C PGS_C08SLe0084H03.1-_SGN-E393897- (115214 115200,113824 113504) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 328 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 328 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 328 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 328 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 328 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 328 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 328 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 328 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 328 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 328 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 328 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 328 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 328 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 328 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 328 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 328 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 328 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 328 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 328 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 328 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 328 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 328 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 328 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 378 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 438 GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 113655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 498 TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 113595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 558 GTTCTATTTC TTCTGTCAAT CTGAATTGTA CTGTTATTGT GGTTACATTC TGTCCTGATT 113535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTATTTC TTCTGTCAAT CTGAATTGTA CTGTTATTGT GGTTACATTC TGTCCTGATT 618 CCATAAAAGT CCATCTGAAC CTTTAAACTT A 113504 |||||||||| |||||||||| |||||||||| | CCATAAAAGT CCATCTGAAC CTTTAAACTT A 649 hqPGS_C08SLe0084H03.1-_SGN-E393897- (113824 113504) ******************************************************************************** EST sequence 193 +strand 642 n (File: SGN-E398225+) 1 ACAAAGTGGA GATGATCAAT GACGGAATGC AAGAATTTTT TGTGGAATTT CATGGACCCA 61 AAGAGAGTCC TTACCTGGGA GGTGTGTGGA AAGTGAGGGT AGAGCTCCCA GATGCCTATC 121 CTTACAAGTC ACCATCCATT GGTTTTGTTA ACAAGATTTA CCATCCGAAT GTGGATGAGA 181 TGTCAGGTTC AGTCTGCTTA GATGTTATCA ATCAAACCTG GAGCCCCATG TTTGATCTTG 241 TAAATGTTTT TGAAGTGTTC CTTCCCCAAC TCCTTTTATA TCCTAACCCA TCGGATCCCC 301 TGAATGGAGA AGCTGCAGCT CTCATGATGC GCGATCGTAC TACTTATGAT CAAAAGGTGA 361 AAGAGTATTG CGAGAAATAC GCTAAGAAAG AAGACGCTGG GGCTCCACCT GAAGAAAAAT 421 CTAGTGATGA AGAGTTGAGT GAAGAAGAAA ATGTCTCCAG TGATGATGAA CTTGCTGGAA 481 AAGCAGATCC CTAAGGGTTT AGCAGATCAT GGACAATATT ATAACCCCTT CAATGTTTGT 541 ACATGATATC AACTTCTAAA CCTGTCTTGT CCATGGTTTA CTTGAAGAAA TAGTTCTATT 601 TCTTCTGTCC ATCTGAATTG TACTGTTATT GTGGTTACAT TC Predicted gene structure (within gDNA segment 116000 to 112935): Exon 1 115214 115200 ( 15 n); cDNA 349 363 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 113824 113545 ( 280 n); cDNA 364 642 ( 279 n); score: 0.993 MATCH C08SLe0084H03.1- SGN-E398225+ 0.993 295 0.460 C PGS_C08SLe0084H03.1-_SGN-E398225+ (115214 115200,113824 113545) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 363 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 363 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 363 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 363 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 363 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 363 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 363 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 363 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 363 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 363 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 363 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 363 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 363 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 363 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 363 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 363 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 363 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 363 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 363 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 363 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 363 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 363 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 363 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 413 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 473 GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 113655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 533 TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 113595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAG-AAATA 592 GTTCTATTTC TTCTGTCAAT CTGAATTGTA CTGTTATTGT GGTTACATTC 113545 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| GTTCTATTTC TTCTGTCCAT CTGAATTGTA CTGTTATTGT GGTTACATTC 642 hqPGS_C08SLe0084H03.1-_SGN-E398225+ (113824 113545) ******************************************************************************** EST sequence 169 +strand 724 n (File: SGN-E316137+) 1 AAAAAAAGAA GAAAAAAGGA AGAAAGAATA AGGAAGTAAT CGGAATCATG TCTTCCCCTA 61 GCAAACGCAG AGAGATGGAC TTGATGAAAC TGATGATGAG TGACTACAAA GTGGAGATGA 121 TCAATGACGG AATGCAAGAA TTTTTTGTGG AATTTCATGG ACCCAAAGAG AGTCCTTACC 181 TGGGAGGTGT GTGGAAAGTG AGGGTAGAGC TCCCAGATGC CTATCCTTAC AAGTCACCAT 241 CCATTGGTTT TGTTAACAAG ATTTACCATC CGAATGTGGA TGAGATGTCA GGTTCAGTCT 301 GCTTAGATGT TATCAATCAA ACCTGGAGCC CCATGTTTGA TCTTGTAAAT GTTTTTGAAG 361 TGTTCCTTCC CCAACTCCTT TTATATCCTA ACCCATCGGA TCCCCTGAAT GGAGAAGCTG 421 CAGCTCTCAT GATGCGCGAT CGTACTACTT ATGATCAAAA GGTGAAAGAG TATTGCGAGA 481 AATACGCTAA GAAAGAAGAC GCTGGGGCTC CACCTGAAGA AAAATCTAGT GATGAAGAGT 541 TGAGTGAAGA AAAAATGTCT CCAGTGATGA TGAACTTGCT GGAAAAGCAG ATCCCTAAGG 601 GTTTAGCAGA TCATGGACAA TATTATAACC CCTTNCATGT TTGTACATGA TATCAACTTC 661 TAAACCTGTC TTTGTCATGG TTTACTTGAA GAAAAATAGT CTATTTCTTC TGTCNATCTG 721 AATT Predicted gene structure (within gDNA segment 116000 to 112697): Exon 1 115214 115200 ( 15 n); cDNA 454 468 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 113824 113568 ( 257 n); cDNA 469 724 ( 256 n); score: 0.957 MATCH C08SLe0084H03.1- SGN-E316137+ 0.957 272 0.376 C PGS_C08SLe0084H03.1-_SGN-E316137+ (115214 115200,113824 113568) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 468 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 468 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 468 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 468 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 468 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 468 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 468 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 468 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 468 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 468 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 468 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 468 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 468 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 468 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 468 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 468 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 468 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 468 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 468 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 468 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 468 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 468 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 468 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 518 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAA-AAAATG TCTCCAGTGA TGATGAACTT 577 GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 113655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTNCA 637 TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 113595 |||||||||| |||||||||| |||||||||| ||||| || |||||||||| |||||||| TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTTGTCA TGGTTTACTT GAAGAAAAAT 697 GTTCTATTTC TTCTGTCAAT CTGAATT 113568 |||||||| ||||||| || ||||||| AGTCTATTTC TTCTGTCNAT CTGAATT 724 hqPGS_C08SLe0084H03.1-_SGN-E316137+ (113824 113568) ******************************************************************************** EST sequence 17 -strand 448 n (File: SGN-E238819-) 1 GTCAGGTTCA GTCTGCTTAG ATGTTATCAA TCAAACCTGG AGCCCCATGT TTGATCTTGT 61 AAATGTTTTT GAAGTGTTCC TTCCCCCAAC TCCTTTTATA TCCTAACCCA TCGGATCCCC 121 TGAATGGAGA AGCTGCAGCT CTCATGATGC GCGATCGTAC TACTTATGAT CAAAAGGTGA 181 AAGAGTATTG CGAGAAATAC GCTAAGAAAG AAGACGCTGG GGCTCCACCT GAAGAAAAAT 241 CTAGTGATGA AGAGTTGAGT GAAGAAGAAA ATGTCTCCAG TGATGATGAA CCTGCTGGAA 301 AAGCAGATCC CTAAGGGTTT AGCAGATCAT GGACAATATT ATAACCCCTT CAATGTTTGT 361 ACATGATATC AACTTCTAAA CCTGTCTTGT CCATGGTTTA CTTGAAGAAA ATAGTTCTAT 421 TTCTTCTGTC AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 116000 to 112816): Exon 1 115214 115200 ( 15 n); cDNA 169 183 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 113824 113571 ( 254 n); cDNA 184 437 ( 254 n); score: 0.980 Intron 2 113570 113467 ( 104 n); Pd: 0.000 (s: 0.92), Pa: 0.969 (s: 0) Exon 3 113466 113456 ( 11 n); cDNA 438 448 ( 11 n); score: 0.636 MATCH C08SLe0084H03.1- SGN-E238819- 0.980 280 0.625 C PGS_C08SLe0084H03.1-_SGN-E238819- (115214 115200,113824 113571,113466 113456) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 183 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 183 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 183 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 183 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 183 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 183 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 183 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 183 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 183 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 183 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 183 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 183 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 183 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 183 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 183 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 183 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 183 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 183 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 183 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 183 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 183 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 183 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 183 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 233 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACCT 293 GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 113655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 353 TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 113595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 413 GTTCTATTTC TTCTGTCAAT CTGAATTGTA CTGTTATTGT GGTTACATTC TGTCCTGATT 113535 |||||||||| ||||||||| | GTTCTATTTC TTCTGTCAAA AAAA...... .......... .......... .......... 437 CCATAAAAGT CCATCTGAAC CTTTAAACTT AATTTGATGT CTGCACTTCT ATATATCTTT 113475 .......... .......... .......... .......... .......... .......... 437 AAATCTAGAT AAGAATCAA 113456 | || || || ........AA AAAAAAAAA 448 hqPGS_C08SLe0084H03.1-_SGN-E238819- (113824 113571) ******************************************************************************** EST sequence 18 -strand 423 n (File: SGN-E238915-) 1 ATGTTATCAA TCAACCTGGA GCCCATGTTT GATCTTGTAA TGTTTTTAAG TGTTCCTTCC 61 ACAACTCCTT TTATATCCTA ACCCATCGGA TCCCCTGAAT GGAGAAGCTG CAGCTCTCAT 121 GATGCGCGAT CGTACTACTT ATGATCAAAA GGTGAAAGAG TATTGCGAGA AATACGCTAA 181 GAAAGAAGAC GCTGGGGCTC CACCTGAAGA AAAATCTAGT GATGAAGAGT TGAGTGAAGA 241 AGAAAATGTC TCCAGTGATG ATGAACTTGC TGGAAAAGCA GATCCCTAAG GGTTTAGCAG 301 ATCATGGACA ATATTATAAC CCCTTCAATG TTTGTACATG ATATCAACTT CTAAACCTGT 361 CTTGTCCATG GTTTACTTGA AGAAAATAGT TCTATTTCTT CTGTCAAAAA AAAAAAAAAA 421 AAA Predicted gene structure (within gDNA segment 115996 to 112816): Exon 1 115214 115200 ( 15 n); cDNA 144 158 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 113824 113571 ( 254 n); cDNA 159 412 ( 254 n); score: 0.984 Intron 2 113570 113467 ( 104 n); Pd: 0.000 (s: 0.92), Pa: 0.969 (s: 0) Exon 3 113466 113456 ( 11 n); cDNA 413 423 ( 11 n); score: 0.636 MATCH C08SLe0084H03.1- SGN-E238915- 0.984 280 0.662 C PGS_C08SLe0084H03.1-_SGN-E238915- (115214 115200,113824 113571,113466 113456) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 158 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 158 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 158 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 158 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 158 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 158 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 158 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 158 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 158 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 158 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 158 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 158 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 158 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 158 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 158 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 158 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 158 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 158 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 158 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 158 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 158 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 158 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 158 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 208 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 268 GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 113655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 328 TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 113595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT GAAGAAAATA 388 GTTCTATTTC TTCTGTCAAT CTGAATTGTA CTGTTATTGT GGTTACATTC TGTCCTGATT 113535 |||||||||| ||||||||| | GTTCTATTTC TTCTGTCAAA AAAA...... .......... .......... .......... 412 CCATAAAAGT CCATCTGAAC CTTTAAACTT AATTTGATGT CTGCACTTCT ATATATCTTT 113475 .......... .......... .......... .......... .......... .......... 412 AAATCTAGAT AAGAATCAA 113456 | || || || ........AA AAAAAAAAA 423 hqPGS_C08SLe0084H03.1-_SGN-E238915- (113824 113571) ******************************************************************************** EST sequence 170 +strand 689 n (File: SGN-E315999+) 1 AAAAAAAGAA GAAAAAAGGA AGAAAGAATA AGGAAGTAAT CGGAATCATG TCTTCCCCTA 61 GCAAACGCAG AGAGATGGAC TTGATGAAAC TGATGATGAG TGACTACAAA GTGGAGATGA 121 TCAATGACGG AATGCAAGAA TTTTTTGTGG AATTTCATGG ACCCAAAGAG AGTCCTTACC 181 TGGGAGGTGT GTGGAAAGTG AGGGTAGAGC TCCCAGATGC CTATCCTTAC AAGTCACCAT 241 CCATTGGTTT TGTTAACAAG ATTTACCATC CGAATGTGGA TGAGATGTCA GGTTCAGTCT 301 GCTTAGATGT TATCAATCAA ACCTGGAGCC CCATGTTTGA TCTTGTAAAT GTTTTTGAAG 361 TGTTCCTTCC CCAACTCCTT TTATATCCTA ACCCATCGGA TCCCCTGAAT GGAGAAGCTG 421 CAGCTCTCAT GATGCGCGAT CGTACTACTT ATGATCAAAA GGTGAAAGAG TATTGCGAGA 481 AATACGCTAA GAAAGAAGAC GCTGGGGCTC CACCTGAAGA AAAATCTAGT GATGAAGAGT 541 TGAGTGAAGA AGAAAATGTC TCCAGTGATG ATGAACTTGC TGGAAAAGCA GATCCCTAAG 601 GGTTTAGCAG ATCATGGACA ATATTATAAC CCCTTCAATG TTTGTACATG ATATCAACTT 661 CTAAACCTGT CTTGTCCATG GTTTACTTG Predicted gene structure (within gDNA segment 116000 to 112994): Exon 1 115214 115200 ( 15 n); cDNA 454 468 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 113824 113604 ( 221 n); cDNA 469 689 ( 221 n); score: 1.000 MATCH C08SLe0084H03.1- SGN-E315999+ 1.000 236 0.343 C PGS_C08SLe0084H03.1-_SGN-E315999+ (115214 115200,113824 113604) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 468 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 468 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 468 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 468 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 468 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 468 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 468 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 468 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 468 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 468 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 468 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 468 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 468 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 468 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 468 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 468 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 468 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 468 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 468 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 468 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 468 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 468 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 468 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 518 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 578 GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 113655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATATTATA ACCCCTTCAA 638 TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT G 113604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGTTTGTACA TGATATCAAC TTCTAAACCT GTCTTGTCCA TGGTTTACTT G 689 hqPGS_C08SLe0084H03.1-_SGN-E315999+ (113824 113604) ******************************************************************************** EST sequence 161 +strand 621 n (File: SGN-E202831+) 1 GCACGAGGAA AAAAGGAAGA AAGAATAAGG AAGTAATCGG AATCATGTCT TCCCCTAGCA 61 AACGCAGAGA GATGGACTTG ATGAAACTGA TGATGAGTGA CTACAAAGTG GAGATGATCA 121 ATGACGGAAT GCAAGAATTT TTTGTGGAAT TTCATGGACC CAAAGAGAGT CCTTACCTGG 181 GAGGTGTGTG GAAAGTGAGG GTAGAGCTCC CAGATGCCTA TCCTTACAAG TCACCATCCA 241 TTGGTTTTGT TAACAAGATT TACCATCCGA ATGTGGATGA GATGTCAGGT TCAGTCTGCT 301 TAGATGTTAT CAATCAAACC TGGAGCCCCA TGTTTGATCT TGTAAATGTT TTTGAAGTGT 361 TCCTTCCCCA ACTCCTTTTA TATCCTAACC CATCGGATCC CCTGAATGGA GAAGCTGCAG 421 CTCTCATGAT GCGCGATCGT ACTACTTATG ATCAAAAGGT GAAAGAGTAT TGCGAGAAAT 481 ACGCTAAGAA AGAAGACGCT GGGGCTCCAC CTGAAGAAAA ATCTAGTGAT GAAGAGTTGA 541 GTGAAGAAGA AAATGTCTTC AGTGATGATG AACTTGCTGG AAAAGCAGAT CCCTAAGGGT 601 TTAGCAGATC ATGGACAATA T Predicted gene structure (within gDNA segment 116000 to 113059): Exon 1 115214 115200 ( 15 n); cDNA 451 465 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 113824 113669 ( 156 n); cDNA 466 621 ( 156 n); score: 0.994 MATCH C08SLe0084H03.1- SGN-E202831+ 0.994 171 0.275 C PGS_C08SLe0084H03.1-_SGN-E202831+ (115214 115200,113824 113669) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 465 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 465 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 465 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 465 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 465 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 465 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 465 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 465 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 465 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 465 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 465 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 465 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 465 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 465 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 465 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 465 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 465 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 465 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 465 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 465 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 465 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 465 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 465 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 515 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTTCAGTGA TGATGAACTT 575 GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATAT 113669 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCTGGAAAAG CAGATCCCTA AGGGTTTAGC AGATCATGGA CAATAT 621 hqPGS_C08SLe0084H03.1-_SGN-E202831+ (113824 113669) ******************************************************************************** EST sequence 165 +strand 478 n (File: SGN-E202510+) 1 CAAAGTGGAG ATGATCAATG ACGGAATGCA AGAATTTTTT GTGGAATTTC ATGGACCCAA 61 AGAGAGTCCT TACCTGGGAG GTGTGTGGAA AGTGAGGGTA GAGCTCCCAG ATGCCTATCC 121 TTACAAGTCA CCATCCATTG GTTTTGTTAA CAAGATTTAC CATCCGAATG TGGATGAGAT 181 GTCAGGTTCA GTCTGCTTAG ATGTTATCAA TCAAACCTGG AGCCCCATGT TTGATCTTGT 241 AAATGTTTTT GAAGTGTTCC TTCCCCAACT CCTTTTATAT CCTAACCCAT CGGATCCCCT 301 GAATGGAGAA GCTGCAGCTC TCATGATGCG CGATCGTACT ACTTATGATC AAAAGGTGAA 361 AGAGTATTGC GAGAAATACC CTAAGAAAGA AGACGCTGGG GCTCCACCTG AAGAAAAATC 421 TAGTGATGAA GAGTTGAGTG AAGAAGAAAA TGTCTCCAGT GATGATGAAC TTGCTGGA Predicted gene structure (within gDNA segment 116000 to 113099): Exon 1 115214 115200 ( 15 n); cDNA 348 362 ( 15 n); score: 0.733 Intron 1 115199 113825 (1375 n); Pd: 0.000 (s: 0), Pa: 0.991 (s: 0.98) Exon 2 113824 113709 ( 116 n); cDNA 363 478 ( 116 n); score: 0.991 MATCH C08SLe0084H03.1- SGN-E202510+ 0.991 131 0.274 C PGS_C08SLe0084H03.1-_SGN-E202510+ (115214 115200,113824 113709) Alignment (genomic DNA sequence = upper lines): ATCCTGAGGT GACAGTCCAG GAGTGCTGGT CCACACAGGG GTGGGATATC CCTTTTAGGA 115155 ||| |||| || || ATCAAAAGGT GAAAG..... .......... .......... .......... .......... 362 GGCTTCTTAG TGCTTGGGAA ATAGAGAGGG TACCTTTGTT ATTGGGGAAG TAGGGGAAGT 115095 .......... .......... .......... .......... .......... .......... 362 TTCTATCAGT AATATCTGCT GATGAGATCT CCGGAAACAT AATAGAAATA GGATAATACA 115035 .......... .......... .......... .......... .......... .......... 362 TAAGAGGTGG TCAGGTGAAA AATGAGAATG ATCAATTCAA GTGAAATTAC TTCCGGAAAA 114975 .......... .......... .......... .......... .......... .......... 362 GCAACATACC TACCAAAACA AAGTGCTTTA CTTGGTTCCC AGGTGTCCTC TGTGTATGGT 114915 .......... .......... .......... .......... .......... .......... 362 GACCGAGGAG ACGAACAAGC ACCTTTTTTG CATTGCAACT CCACTGCTCA GCTGTGGAAT 114855 .......... .......... .......... .......... .......... .......... 362 TGTTTCATAG GCAATAGCTG GACCATGCAT GAGCCATACA TCAGACCACC TTAGCTGGTT 114795 .......... .......... .......... .......... .......... .......... 362 GATAAGGAGG AGGGGAATAA GAGTCAGAAG AGATGGTGGA GAATGGATGT TTTGAAGATA 114735 .......... .......... .......... .......... .......... .......... 362 GTTCCAGTTC CATTCACTTC ACAAAATTAA ATGGAATTGT ATCAGATCTT CACTTTTTAA 114675 .......... .......... .......... .......... .......... .......... 362 ACAGTTACGT ATAGAGGATA CTGTCCAGAT TATATATCTG AAGAATACAA ACTTAACAGT 114615 .......... .......... .......... .......... .......... .......... 362 TTTAAAAGGA AAAAAAGGCA ATTGCTGCAT TTGAGTGGAG TAAGTTAAGG ACAAGATGTA 114555 .......... .......... .......... .......... .......... .......... 362 GTTTGAAGGG AAACAAAATT AGTATCTATT TAGCATTTAT GAATCAGATG TTAGAGCAAG 114495 .......... .......... .......... .......... .......... .......... 362 AGAGGCAGAT GATGCTCTGT TCATATATCC TTTCCTGTGG TAAGAGAACT GATAAAAGAA 114435 .......... .......... .......... .......... .......... .......... 362 TTTATTTCTT TTTGCCGATG TTCTCATTCA AATGTGTATG CCAGATTTAG AATTAAATCC 114375 .......... .......... .......... .......... .......... .......... 362 AAATGTAAAT GAGAAATTTT ACCATCTTGT TGCTTTTAGC TTTACTTTTC CCTTCTTTCC 114315 .......... .......... .......... .......... .......... .......... 362 AATTTGTTCC CGTTACTGTT ACTCTTAGCT ACTGGCACCA ACCTACAAAT GAGAGGAACC 114255 .......... .......... .......... .......... .......... .......... 362 TTTTTTTTTA GTCTAAAAAG AAAGCTCTAA TCAAGTGTGT TTTTGGGGGG TTATCTCAGA 114195 .......... .......... .......... .......... .......... .......... 362 TATACTACAT CTCTTATTTC CTTAACGTGT TGGGAACTGT GTTCTTGGGG ACTATGTCTT 114135 .......... .......... .......... .......... .......... .......... 362 CACTATAACG TTTCTTGATT CACTAGAAGA CGGATCTCCA CTTTTCCTTT GCATCTGTTG 114075 .......... .......... .......... .......... .......... .......... 362 ATTGCTTTTC TGTTTGTCCA GTTCTTTATT TTGTCAAAAG TATTTCAGTG ATGCTGTTAT 114015 .......... .......... .......... .......... .......... .......... 362 AACACCTGTA GGTACTCTTT GCCTATTTCG TACCTCATTG CCCCGGTTGC AAAGTTTTGA 113955 .......... .......... .......... .......... .......... .......... 362 TTGCCCATAG TCTGCACTTT TAATGTATTC AACTTTGTGA TGTAATTATG TACCTTGTTT 113895 .......... .......... .......... .......... .......... .......... 362 CCAAATTATC GAACTTTTTA CTTCAGTTTA TGTTGCCTCA TTACTTATGG CCTAAATATT 113835 .......... .......... .......... .......... .......... .......... 362 TCTCTCTCAG AGTATTGCGA GAAATACGCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 113775 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| .......... AGTATTGCGA GAAATACCCT AAGAAAGAAG ACGCTGGGGC TCCACCTGAA 412 GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 113715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATCTA GTGATGAAGA GTTGAGTGAA GAAGAAAATG TCTCCAGTGA TGATGAACTT 472 GCTGGA 113709 |||||| GCTGGA 478 hqPGS_C08SLe0084H03.1-_SGN-E202510+ (113824 113709) Total number of EST alignments reported: 263 ________________________________________________________________________________ Predicted gene locations (21) in segment 1 to 116000: PGL 1 (+ strand): 1873 5975 AGS-1 (1873 2102,3599 3665,4969 5017,5340 5384,5696 5975) SCR (e 1.000 d 0.981 a 0.992,e 1.000 d 0.967 a 0.991,e 1.000 d 0.969 a 0.862,e 1.000 d 0.990 a 0.954,e 1.000) Exon 1 1873 2102 ( 230 n); score: 1.000 Intron 1 2103 3598 (1496 n); Pd: 0.981 Pa: 0.992 Exon 2 3599 3665 ( 67 n); score: 1.000 Intron 2 3666 4968 (1303 n); Pd: 0.967 Pa: 0.991 Exon 3 4969 5017 ( 49 n); score: 1.000 Intron 3 5018 5339 ( 322 n); Pd: 0.969 Pa: 0.862 Exon 4 5340 5384 ( 45 n); score: 1.000 Intron 4 5385 5695 ( 311 n); Pd: 0.990 Pa: 0.954 Exon 5 5696 5975 ( 280 n); score: 1.000 PGS (1873 2102,3599 3665,4969 5017,5340 5384,5696 5814) SGN-E324968+ PGS (1873 2102,3599 3665,4969 5017,5340 5384,5696 5814) SGN-E324971+ PGS (1913 2102,3599 3665,4969 5017,5340 5384,5696 5942) SGN-E556545+ PGS (5346 5384,5696 5975) SGN-E237330- PGS (5696 5975) SGN-E237221- 3-phase translation of AGS-1 (+strand): . . . . . . 1873 AGAAGGAGGAAGAGAAGAATCAACTGATAACAGACGATGACAGAGATGGAGAAGAAGAAC R R R K R R I N - - Q T M T E M E K K N E G G R E E S T D N R R - Q R W R R R T K E E E K N Q L I T D D D R D G E E E . . . . . . 1933 AACAACAAAGAGGGGAATGTGGTGATCACGAAAATGCGGAATCTCAAACATCGTCGTCTT N N K E G N V V I T K M R N L K H R R L T T K R G M W - S R K C G I S N I V V F Q Q Q R G E C G D H E N A E S Q T S S S . . . . . . 1993 TAAATGGCAAAGAAATACTGAAAGCAATCGAAGTTGTGGAGAGAGATTCTATGGCGATCG - M A K K Y - K Q S K L W R E I L W R S K W Q R N T E S N R S C G E R F Y G D R L N G K E I L K A I E V V E R D S M A I . . . . . : . 2053 CCCATAGCTACACTTCACTTTTTGCTTCTCTTCGATCAACTTTATCAGAG : GTTACTAGTA P I A T L H F L L L F D Q L Y Q R : L L V P - L H F T F C F S S I N F I R : G Y - Y A H S Y T S L F A S L R S T L S E : V T S . . . . . . : 3609 CTTCTGTTGATCACATGATCTGCTTTGGTGATGCAGCAGGACGAGTTCAAGAATGTG : CAC L L L I T - S A L V M Q Q D E F K N V : H F C - S H D L L W - C S R T S S R M C : T T S V D H M I C F G D A A G R V Q E C : A . . . . . : . 4972 TTGATGCAGCAACTAAAGGAAACCGTTACATAAACTCTTGCTTAAG : ATTGAACGAGGAAA L M Q Q L K E T V T - T L A - : D - T R K - C S N - R K P L H K L L L K : I E R G N L D A A T K G N R Y I N S C L R : L N E E . . . . : . . 5354 TGAAAGGAATTGATAATCTTGCAACCCAGCT : GAAAATCATCCGGAGAAACGTAGATGCAT - K E L I I L Q P S : - K S S G E T - M H E R N - - S C N P A : E N H P E K R R C I M K G I D N L A T Q L : K I I R R N V D A . . . . . . 5725 TGGACTCGGCTGTAAATAGGCTAGTTCGTTTCCCATGAGTGTGGATCTGTCTTGATGGAC W T R L - I G - F V S H E C G S V L M D G L G C K - A S S F P M S V D L S - W T L D S A V N R L V R F P - V W I C L D G . . . . . . 5785 GATGTCAACTAGGTGAGCTGCACATATTTTGTGGTGCTTTATATATGAGTGAGATGCCAG D V N - V S C T Y F V V L Y I - V R C Q M S T R - A A H I L W C F I Y E - D A S R C Q L G E L H I F C G A L Y M S E M P . . . . . . 5845 TTAAGTCTTGCTTCTTTGAAGGTTTAAGAATAAAACAGTGTGTAATTGAATGAATTGCAA L S L A S L K V - E - N S V - L N E L Q - V L L L - R F K N K T V C N - M N C K V K S C F F E G L R I K Q C V I E - I A . . . . . . 5905 GGCTGATACATTTTCTAACCCATAGAAAAGCTTTCACCATTGTTGCTTTTGCATACAATT G - Y I F - P I E K L S P L L L L H T I A D T F S N P - K S F H H C C F C I Q F R L I H F L T H R K A F T I V A F A Y N . . 5965 TTTACCTCACT F T S L P H F Y L T Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-1_AGS-1_PPS_1 (1875 2102,3599 3665,4969 5017,5340 5384,5696 5762) (frame '0'; 453 bp, 151 residues) 1 KEEEKNQLIT DDDRDGEEEQ QQRGECGDHE NAESQTSSSL NGKEILKAIE VVERDSMAIA 61 HSYTSLFASL RSTLSEVTST SVDHMICFGD AAGRVQECAL DAATKGNRYI NSCLRLNEEM 121 KGIDNLATQL KIIRRNVDAL DSAVNRLVRF P- AGS-2 (1894 2538) SCR (e 0.991) Exon 1 1894 2538 ( 645 n); score: 0.991 PGS (1894 2538) SGN-E314977+ 3-phase translation of AGS-2 (+strand): . . . . . . 1894 AACTGATAACAGACGATGACAGAGATGGAGAAGAAGAACAACAACAAAGAGGGGAATGTG N - - Q T M T E M E K K N N N K E G N V T D N R R - Q R W R R R T T T K R G M W L I T D D D R D G E E E Q Q Q R G E C . . . . . . 1954 GTGATCACGAAAATGCGGAATCTCAAACATCGTCGTCTTTAAATGGCAAAGAAATACTGA V I T K M R N L K H R R L - M A K K Y - - S R K C G I S N I V V F K W Q R N T E G D H E N A E S Q T S S S L N G K E I L . . . . . . 2014 AAGCAATCGAAGTTGTGGAGAGAGATTCTATGGCGATCGCCCATAGCTACACTTCACTTT K Q S K L W R E I L W R S P I A T L H F S N R S C G E R F Y G D R P - L H F T F K A I E V V E R D S M A I A H S Y T S L . . . . . . 2074 TTGCTTCTCTTCGATCAACTTTATCAGAGGTTTCTTCTTTCTGTCCTTAATTCTTGCATT L L L F D Q L Y Q R F L L S V L N S C I C F S S I N F I R G F F F L S L I L A F F A S L R S T L S E V S S F C P - F L H . . . . . . 2134 TCCTCATAATCTTAGTACTCGGTGGTGTTGAGGCCACTGCTGCAAATAGTGGCGTAGCTT S S - S - Y S V V L R P L L Q I V A - L P H N L S T R W C - G H C C K - W R S F F L I I L V L G G V E A T A A N S G V A . . . . . . 2194 TGAGATAGTGTTATCTGAAAGTAATTATCTTTAGTCCTTCATCATGTTCAGTGTTTGGCA - D S V I - K - L S L V L H H V Q C L A E I V L S E S N Y L - S F I M F S V W H L R - C Y L K V I I F S P S S C S V F G . . . . . . 2254 CGTTTCTTTTTAATTTGGTTACTGATAAAAAGAGAGTCTTTTTTGTTTTTTTAATTTGGT R F F L I W L L I K R E S F L F F - F G V S F - F G Y - - K E S L F C F F N L V T F L F N L V T D K K R V F F V F L I W . . . . . . 2314 TTGAGATGATTGTATGTCAGTGGAGGGATGATTGTGAGATTTAGAGAATCCTCAATTTAT L R - L Y V S G G M I V R F R E S S I Y - D D C M S V E G - L - D L E N P Q F I F E M I V C Q W R D D C E I - R I L N L . . . . . . 2374 AATGAACTGGAGTGGATGTTGAGTATAGATATAGCTTATCTTAGTTAGTTTGGGAATTAA N E L E W M L S I D I A Y L S - F G N - M N W S G C - V - I - L I L V S L G I K - - T G V D V E Y R Y S L S - L V W E L . . . . . . 2434 GCGAAGAAGTAGTAGTTGGATAGAAAAGCATGTTTAAGGTGATCAACGAGCTGCATGGTG A K K - - L D R K A C L R - S T S C M V R R S S S W I E K H V - G D Q R A A W - S E E V V V G - K S M F K V I N E L H G . . . . . 2494 ATCTAAGCTCTTTGCCTGCTTTTTGATTGTGCATTTTGCTTGTAA I - A L C L L F D C A F C L - S K L F A C F L I V H F A C D L S S L P A F - L C I L L V Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-1_AGS-2_PPS_1 (1896 2123) (frame '0'; 225 bp, 75 residues) 1 LITDDDRDGE EEQQQRGECG DHENAESQTS SSLNGKEILK AIEVVERDSM AIAHSYTSLF 61 ASLRSTLSEV SSFCP- 3-phase translation of AGS-2 (-strand): . . . . . . 2538 TTACAAGCAAAATGCACAATCAAAAAGCAGGCAAAGAGCTTAGATCACCATGCAGCTCGT L Q A K C T I K K Q A K S L D H H A A R Y K Q N A Q S K S R Q R A - I T M Q L V T S K M H N Q K A G K E L R S P C S S . . . . . . 2478 TGATCACCTTAAACATGCTTTTCTATCCAACTACTACTTCTTCGCTTAATTCCCAAACTA - S P - T C F S I Q L L L L R L I P K L D H L K H A F L S N Y Y F F A - F P N - L I T L N M L F Y P T T T S S L N S Q T . . . . . . 2418 ACTAAGATAAGCTATATCTATACTCAACATCCACTCCAGTTCATTATAAATTGAGGATTC T K I S Y I Y T Q H P L Q F I I N - G F L R - A I S I L N I H S S S L - I E D S N - D K L Y L Y S T S T P V H Y K L R I . . . . . . 2358 TCTAAATCTCACAATCATCCCTCCACTGACATACAATCATCTCAAACCAAATTAAAAAAA S K S H N H P S T D I Q S S Q T K L K K L N L T I I P P L T Y N H L K P N - K N L - I S Q S S L H - H T I I S N Q I K K . . . . . . 2298 CAAAAAAGACTCTCTTTTTATCAGTAACCAAATTAAAAAGAAACGTGCCAAACACTGAAC Q K R L S F Y Q - P N - K E T C Q T L N K K D S L F I S N Q I K K K R A K H - T T K K T L F L S V T K L K R N V P N T E . . . . . . 2238 ATGATGAAGGACTAAAGATAATTACTTTCAGATAACACTATCTCAAAGCTACGCCACTAT M M K D - R - L L S D N T I S K L R H Y - - R T K D N Y F Q I T L S Q S Y A T I H D E G L K I I T F R - H Y L K A T P L . . . . . . 2178 TTGCAGCAGTGGCCTCAACACCACCGAGTACTAAGATTATGAGGAAATGCAAGAATTAAG L Q Q W P Q H H R V L R L - G N A R I K C S S G L N T T E Y - D Y E E M Q E L R F A A V A S T P P S T K I M R K C K N - . . . . . . 2118 GACAGAAAGAAGAAACCTCTGATAAAGTTGATCGAAGAGAAGCAAAAAGTGAAGTGTAGC D R K K K P L I K L I E E K Q K V K C S T E R R N L - - S - S K R S K K - S V A G Q K E E T S D K V D R R E A K S E V - . . . . . . 2058 TATGGGCGATCGCCATAGAATCTCTCTCCACAACTTCGATTGCTTTCAGTATTTCTTTGC Y G R S P - N L S P Q L R L L S V F L C M G D R H R I S L H N F D C F Q Y F F A L W A I A I E S L S T T S I A F S I S L . . . . . . 1998 CATTTAAAGACGACGATGTTTGAGATTCCGCATTTTCGTGATCACCACATTCCCCTCTTT H L K T T M F E I P H F R D H H I P L F I - R R R C L R F R I F V I T T F P S L P F K D D D V - D S A F S - S P H S P L . . . . . 1938 GTTGTTGTTCTTCTTCTCCATCTCTGTCATCGTCTGTTATCAGTT V V V L L L H L C H R L L S V L L F F F S I S V I V C Y Q C C C S S S P S L S S S V I S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 8092 9983 AGS-1 (8092 8431,9274 9495,9893 9983) SCR (e 1.000 d 0.993 a 0.979,e 1.000 d 0.390 a 0.998,e 0.989) Exon 1 8092 8431 ( 340 n); score: 1.000 Intron 1 8432 9273 ( 842 n); Pd: 0.993 Pa: 0.979 Exon 2 9274 9495 ( 222 n); score: 1.000 Intron 2 9496 9892 ( 397 n); Pd: 0.390 Pa: 0.998 Exon 3 9893 9983 ( 91 n); score: 0.989 PGS (8092 8431,9274 9495,9893 9983) SGN-E322356+ 3-phase translation of AGS-1 (+strand): . . . . . . 8092 CTGTTTTGGCCTTGTTTCTTGAAATCTGAAACTAAAAAATTCTCTTTGTATGGTCCAATA L F W P C F L K S E T K K F S L Y G P I C F G L V S - N L K L K N S L C M V Q Y V L A L F L E I - N - K I L F V W S N . . . . . . 8152 TGGTTGTGGTCCTGAGAACTAAGATCCCATTTGGGATCAAGATTCAAGATTTATGCTTTC W L W S - E L R S H L G S R F K I Y A F G C G P E N - D P I W D Q D S R F M L S M V V V L R T K I P F G I K I Q D L C F . . . . . . 8212 TTGGTGTTTTATGATTTTGGTGTCGTTTTTTAGAATTTTGAGCTGATTTTTTCTTCACTG L V F Y D F G V V F - N F E L I F S S L W C F M I L V S F F R I L S - F F L H C L G V L - F W C R F L E F - A D F F F T . . . . . . 8272 TCATTTTGGTGAGACAAAAGATTGAAGCTTTGAAAATGGCTATGGGACACCAAGATCAAG S F W - D K R L K L - K W L W D T K I K H F G E T K D - S F E N G Y G T P R S R V I L V R Q K I E A L K M A M G H Q D Q . . . . . . 8332 ATGGAGTCCCAGGCAACTTGAGAAAGCAACTTGCTCTTGCTGTTAGAGGCATTCAATGGA M E S Q A T - E S N L L L L L E A F N G W S P R Q L E K A T C S C C - R H S M E D G V P G N L R K Q L A L A V R G I Q W . . . . : . . 8392 GCTATGCAATCTTCTGGTCAACTGCAGTTACACAACCAGG : GGTGTTGAAATGGATTGATG A M Q S S G Q L Q L H N Q : G C - N G L M L C N L L V N C S Y T T R : G V E M D - W S Y A I F W S T A V T Q P G : V L K W I D . . . . . . 9294 GGTACTATAATGGGGATATCAAGACCAGGAAGACTGTTCAGGCGGGGGAAGTTAATGAAG G T I M G I S R P G R L F R R G K L M K V L - W G Y Q D Q E D C S G G G S - - R G Y Y N G D I K T R K T V Q A G E V N E . . . . . . 9354 ACCAGCTGGGGTTGCATAGAACTGAGCAATTGAAAGAACTTTATAGTTCCCTCTTAACAA T S W G C I E L S N - K N F I V P S - Q P A G V A - N - A I E R T L - F P L N K D Q L G L H R T E Q L K E L Y S S L L T . . . . . . 9414 GTGAAAGTGAAGAAGACCTGCAGCCACAGGCCAAAAGGCCGTCGGCCTCATTATCTCCAG V K V K K T C S H R P K G R R P H Y L Q - K - R R P A A T G Q K A V G L I I S R S E S E E D L Q P Q A K R P S A S L S P . . . : . . . 9474 AAGATCTCACTGATACAGAGTG : GTTACCAGGGAAGACCTTAGCAACAAATGAAACTGTTT K I S L I Q S : G Y Q G R P - Q Q M K L F R S H - Y R V : V T R E D L S N K - N C L E D L T D T E W : L P G K T L A T N E T V . . . . . . 9931 GGCTGTGCAACGCTCACCAAGCCGAGAGTAAAGTCTTTTCTCGTTCTTTGCTA G C A T L T K P R V K S F L V L C A V Q R S P S R E - S L F S F F A W L C N A H Q A E S K V F S R S L L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-2_AGS-1_PPS_1 (8253 8431,9274 9495,9893 9983) (frame '0'; 492 bp, 164 residues) 1 ADFFFTVILV RQKIEALKMA MGHQDQDGVP GNLRKQLALA VRGIQWSYAI FWSTAVTQPG 61 VLKWIDGYYN GDIKTRKTVQ AGEVNEDQLG LHRTEQLKEL YSSLLTSESE EDLQPQAKRP 121 SASLSPEDLT DTEWLPGKTL ATNETVWLCN AHQAESKVFS RSLL PGL 3 (+ strand): 10821 12953 AGS-1 (10821 11516) SCR (e 1.000) Exon 1 10821 11516 ( 696 n); score: 1.000 PGS (10821 11152) SGN-E329550+ PGS (10861 11496) SGN-E250879+ PGS (11089 11516) SGN-E253025+ 3-phase translation of AGS-1 (+strand): . . . . . . 10821 TCACGGAAGATCCTAACCTCATTCAGCAAATAAAAAATTCCTTTCTAGAGGTTGATTACT S R K I L T S F S K - K I P F - R L I T H G R S - P H S A N K K F L S R G - L L T E D P N L I Q Q I K N S F L E V D Y . . . . . . 10881 CCGTTATTTTGAAGAGGCCTAATTATGTCTCCAACGATGCAAAAAATGACACGAATATCG P L F - R G L I M S P T M Q K M T R I S R Y F E E A - L C L Q R C K K - H E Y R S V I L K R P N Y V S N D A K N D T N I . . . . . . 10941 GTAGCCAAAAGCCTGATCATAATGCACTTGAAAATGATGCTTATCCAGTTGAAATAAATT V A K S L I I M H L K M M L I Q L K - I - P K A - S - C T - K - C L S S - N K F G S Q K P D H N A L E N D A Y P V E I N . . . . . . 11001 CACCTCATGATAGTTCAAATGGTTTTGTCGCCAATCAAGAGGCAGAAGATTCACTGATGG H L M I V Q M V L S P I K R Q K I H - W T S - - F K W F C R Q S R G R R F T D G S P H D S S N G F V A N Q E A E D S L M . . . . . . 11061 TGGTAGACGGTATTGGGGAAACTTCACAAGCTCAAAGCTGGAGGTTCATGGATGATAATA W - T V L G K L H K L K A G G S W M I I G R R Y W G N F T S S K L E V H G - - Y V V D G I G E T S Q A Q S W R F M D D N . . . . . . 11121 TCAGTAATGGTGCGAATAATTCCTTGAATTCCAGTGACTGCATCTCTCAAAACAATGCAA S V M V R I I P - I P V T A S L K T M Q Q - W C E - F L E F Q - L H L S K Q C K I S N G A N N S L N S S D C I S Q N N A . . . . . . 11181 ATTGTGAAAAGTTGTCCCCTCTTTCGAGTGGAGAGAAGGAAACTAAGCCTTGCCCACTAG I V K S C P L F R V E R R K L S L A H - L - K V V P S F E W R E G N - A L P T R N C E K L S P L S S G E K E T K P C P L . . . . . . 11241 ACCGTCAAGAGAACGATCAGAAGAAACCGCATCTTTTAGATCACCAAGGAGATGATGCTC T V K R T I R R N R I F - I T K E M M L P S R E R S E E T A S F R S P R R - C S D R Q E N D Q K K P H L L D H Q G D D A . . . . . . 11301 AATATCAAGCTGTCCTTTCTACTCTTTTAAAGAGTTCTGACCAATTAACTTTGGGACCAC N I K L S F L L F - R V L T N - L W D H I S S C P F Y S F K E F - P I N F G T T Q Y Q A V L S T L L K S S D Q L T L G P . . . . . . 11361 ATTTTAGAAATATGAATAAAAAGTCAAGTTTTGCTAGTTGGAAAACCGATATTCAGATGC I L E I - I K S Q V L L V G K P I F R C F - K Y E - K V K F C - L E N R Y S D A H F R N M N K K S S F A S W K T D I Q M . . . . . . 11421 CGAGATTTGGAACTGCACAAAAACTATTGAAGAAGGTACTTCTTGAAGTTCCTAGAATGC R D L E L H K N Y - R R Y F L K F L E C E I W N C T K T I E E G T S - S S - N A P R F G T A Q K L L K K V L L E V P R M . . . . 11481 ATGCTGGTGTTATACATAAATTCAGCAGAGAAAATG M L V L Y I N S A E K M C W C Y T - I Q Q R K H A G V I H K F S R E N Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-3_AGS-1_PPS_1 (10823 11515) (frame '0'; 693 bp, 231 residues) 1 TEDPNLIQQI KNSFLEVDYS VILKRPNYVS NDAKNDTNIG SQKPDHNALE NDAYPVEINS 61 PHDSSNGFVA NQEAEDSLMV VDGIGETSQA QSWRFMDDNI SNGANNSLNS SDCISQNNAN 121 CEKLSPLSSG EKETKPCPLD RQENDQKKPH LLDHQGDDAQ YQAVLSTLLK SSDQLTLGPH 181 FRNMNKKSSF ASWKTDIQMP RFGTAQKLLK KVLLEVPRMH AGVIHKFSRE N 3-phase translation of AGS-1 (-strand): . . . . . . 11516 CATTTTCTCTGCTGAATTTATGTATAACACCAGCATGCATTCTAGGAACTTCAAGAAGTA H F L C - I Y V - H Q H A F - E L Q E V I F S A E F M Y N T S M H S R N F K K Y F S L L N L C I T P A C I L G T S R S . . . . . . 11456 CCTTCTTCAATAGTTTTTGTGCAGTTCCAAATCTCGGCATCTGAATATCGGTTTTCCAAC P S S I V F V Q F Q I S A S E Y R F S N L L Q - F L C S S K S R H L N I G F P T T F F N S F C A V P N L G I - I S V F Q . . . . . . 11396 TAGCAAAACTTGACTTTTTATTCATATTTCTAAAATGTGGTCCCAAAGTTAATTGGTCAG - Q N L T F Y S Y F - N V V P K L I G Q S K T - L F I H I S K M W S Q S - L V R L A K L D F L F I F L K C G P K V N W S . . . . . . 11336 AACTCTTTAAAAGAGTAGAAAGGACAGCTTGATATTGAGCATCATCTCCTTGGTGATCTA N S L K E - K G Q L D I E H H L L G D L T L - K S R K D S L I L S I I S L V I - E L F K R V E R T A - Y - A S S P W - S . . . . . . 11276 AAAGATGCGGTTTCTTCTGATCGTTCTCTTGACGGTCTAGTGGGCAAGGCTTAGTTTCCT K D A V S S D R S L D G L V G K A - F P K M R F L L I V L L T V - W A R L S F L K R C G F F - S F S - R S S G Q G L V S . . . . . . 11216 TCTCTCCACTCGAAAGAGGGGACAACTTTTCACAATTTGCATTGTTTTGAGAGATGCAGT S L H S K E G T T F H N L H C F E R C S L S T R K R G Q L F T I C I V L R D A V F S P L E R G D N F S Q F A L F - E M Q . . . . . . 11156 CACTGGAATTCAAGGAATTATTCGCACCATTACTGATATTATCATCCATGAACCTCCAGC H W N S R N Y S H H Y - Y Y H P - T S S T G I Q G I I R T I T D I I I H E P P A S L E F K E L F A P L L I L S S M N L Q . . . . . . 11096 TTTGAGCTTGTGAAGTTTCCCCAATACCGTCTACCACCATCAGTGAATCTTCTGCCTCTT F E L V K F P Q Y R L P P S V N L L P L L S L - S F P N T V Y H H Q - I F C L L L - A C E V S P I P S T T I S E S S A S . . . . . . 11036 GATTGGCGACAAAACCATTTGAACTATCATGAGGTGAATTTATTTCAACTGGATAAGCAT D W R Q N H L N Y H E V N L F Q L D K H I G D K T I - T I M R - I Y F N W I S I - L A T K P F E L S - G E F I S T G - A . . . . . . 10976 CATTTTCAAGTGCATTATGATCAGGCTTTTGGCTACCGATATTCGTGTCATTTTTTGCAT H F Q V H Y D Q A F G Y R Y S C H F L H I F K C I M I R L L A T D I R V I F C I S F S S A L - S G F W L P I F V S F F A . . . . . . 10916 CGTTGGAGACATAATTAGGCCTCTTCAAAATAACGGAGTAATCAACCTCTAGAAAGGAAT R W R H N - A S S K - R S N Q P L E R N V G D I I R P L Q N N G V I N L - K G I S L E T - L G L F K I T E - S T S R K E . . . . 10856 TTTTTATTTGCTGAATGAGGTTAGGATCTTCCGTGA F L F A E - G - D L P - F Y L L N E V R I F R F F I C - M R L G S S V Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-3_AGS-1_PPS_1 (11105 10899) (frame '1'; 204 bp, 68 residues) 1 TSSFELVKFP QYRLPPSVNL LPLDWRQNHL NYHEVNLFQL DKHHFQVHYD QAFGYRYSCH 61 FLHRWRHN- AGS-2 (11523 11650,11737 12153,12571 12953) SCR (e 1.000 d 0.812 a 1.000,e 1.000 d 0.928 a 0.997,e 1.000) Exon 1 11523 11650 ( 128 n); score: 1.000 Intron 1 11651 11736 ( 86 n); Pd: 0.812 Pa: 1.000 Exon 2 11737 12153 ( 417 n); score: 1.000 Intron 2 12154 12570 ( 417 n); Pd: 0.928 Pa: 0.997 Exon 3 12571 12953 ( 383 n); score: 1.000 PGS (11523 11650,11737 12048) SGN-E299431+ PGS (11563 11650,11737 12153,12571 12685) SGN-E235386+ PGS (11563 11650,11737 12147) SGN-E236045+ PGS (11563 11650,11737 11992) SGN-E228066+ PGS (11568 11650,11737 12046) SGN-E378593+ PGS (11743 11964) SGN-E240631+ PGS (11952 12153,12571 12827) SGN-E234570- PGS (11975 12153,12571 12827) SGN-E235242- PGS (12571 12953) SGN-E217696- PGS (12619 12953) SGN-E217656- 3-phase translation of AGS-2 (+strand): . . . . . . 11523 AGAATAGCCTTTGGAGACCAGAAGTTGATGACATTGATAGAAACCGTGTTATTTCAGAGA R I A F G D Q K L M T L I E T V L F Q R E - P L E T R S - - H - - K P C Y F R E N S L W R P E V D D I D R N R V I S E . . . . . . 11583 GAAGGCGAAGAGAAAAGATAAATGAGAGATTTATGCATCTTGCATCGATGCTGCCAACTA E G E E K R - M R D L C I L H R C C Q L K A K R K D K - E I Y A S C I D A A N - R R R R E K I N E R F M H L A S M L P T . : . . . . . 11643 GTAGCAAG : GTTGACAAAATATCACTACTCGATGAGACAATAGAATACATGAAAGAGCTTG V A R : L T K Y H Y S M R Q - N T - K S L - Q : G - Q N I T T R - D N R I H E R A - S S K : V D K I S L L D E T I E Y M K E L . . . . . . 11789 AAAGGAGAGTTCAGGAGCTGGAGGCGAGATCAGCAAGACGATCAAATGATACTGCAGAGC K G E F R S W R R D Q Q D D Q M I L Q S K E S S G A G G E I S K T I K - Y C R A E R R V Q E L E A R S A R R S N D T A E . . . . . . 11849 AGACATCTGATAATTGTGGCACTAGCAAATTCAATGACATCAGGGGATCACTACCGAACA R H L I I V A L A N S M T S G D H Y R T D I - - L W H - Q I Q - H Q G I T T E Q Q T S D N C G T S K F N D I R G S L P N . . . . . . 11909 AAAGGAAGGCATGTGATATGGATGAAATAGAACCTGAAAGCTCCAATGGATTACTGAAAT K G R H V I W M K - N L K A P M D Y - N K E G M - Y G - N R T - K L Q W I T E M K R K A C D M D E I E P E S S N G L L K . . . . . . 11969 GTAGTTCAGCTGATAGTATTGTCATCAATATGATCGATAAGGAAGTCTCGATCAAGATGA V V Q L I V L S S I - S I R K S R S R - - F S - - Y C H Q Y D R - G S L D Q D E C S S A D S I V I N M I D K E V S I K M . . . . . . 12029 GTTGTCTTTGGAGCGAGAGCTTGTTGCTTAAAATTATGGAGGCACTGACTGACCTACATA V V F G A R A C C L K L W R H - L T Y I L S L E R E L V A - N Y G G T D - P T Y S C L W S E S L L L K I M E A L T D L H . . . . . . 12089 TGGATTGCCATACAGTTCAGTCTTCCAACCTTGATGGGATTCTATCCATTGCTATCGAAT W I A I Q F S L P T L M G F Y P L L S N G L P Y S S V F Q P - W D S I H C Y R I M D C H T V Q S S N L D G I L S I A I E . : . . . . . 12149 CCAAG : TCAACCGGATCGAAAACACTAGCAGTCGGAACAATTAGAGAAGCACTTCAGAGAG P S : Q P D R K H - Q S E Q L E K H F R E Q : V N R I E N T S S R N N - R S T S E S S K : S T G S K T L A V G T I R E A L Q R . . . . . . 12626 TAGTATGGAAATCTTGAAGATTAGTCAGTCAAGGTTGGTCAATTAAGCCCATATGAAAAA - Y G N L E D - S V K V G Q L S P Y E K S M E I L K I S Q S R L V N - A H M K K V V W K S - R L V S Q G W S I K P I - K . . . . . . 12686 GAGCTTGGTCAGTCCTGTCCTTAGTGGATAGTTAAAGCTTGTGTATAGTATTGTACTTAT E L G Q S C P - W I V K A C V - Y C T Y S L V S P V L S G - L K L V Y S I V L M R A W S V L S L V D S - S L C I V L Y L . . . . . . 12746 GCTTTTTTCGAAGATTTGAAAAGCCTAGGGAAAAAGTAGTAATTTGGAGTAGCTTTCTCC A F F E D L K S L G K K - - F G V A F S L F S K I - K A - G K S S N L E - L S P C F F R R F E K P R E K V V I W S S F L . . . . . . 12806 TAATGCATCATCCTCTTTCATGATCATCACTTTTTTGTGGTCCTCTAAAAAGTTCATGAA - C I I L F H D H H F F V V L - K V H E N A S S S F M I I T F L W S S K K F M K L M H H P L S - S S L F C G P L K S S - . . . . . . 12866 AGTAAAGTTGCTGAATCTTGCTATTGATTTCTGTCCCCACTAACAAAGTTGAAAGGTCAT S K V A E S C Y - F L S P L T K L K G H V K L L N L A I D F C P H - Q S - K V I K - S C - I L L L I S V P T N K V E R S . . . 12926 CTCAGGAATGGAAAAAAGTTTGCTGTTT L R N G K K F A V S G M E K S L L F S Q E W K K V C C Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-3_AGS-2_PPS_1 (11525 11650,11737 12153,12571 12642) (frame '0'; 612 bp, 204 residues) 1 NSLWRPEVDD IDRNRVISER RRREKINERF MHLASMLPTS SKVDKISLLD ETIEYMKELE 61 RRVQELEARS ARRSNDTAEQ TSDNCGTSKF NDIRGSLPNK RKACDMDEIE PESSNGLLKC 121 SSADSIVINM IDKEVSIKMS CLWSESLLLK IMEALTDLHM DCHTVQSSNL DGILSIAIES 181 KSTGSKTLAV GTIREALQRV VWKS- PGL 4 (- strand): 15845 14878 AGS-1 (15845 15663,15467 15092,14989 14878) SCR (e 1.000 d 1.000 a 0.899,e 1.000 d 0.995 a 0.993,e 1.000) Exon 1 15845 15663 ( 183 n); score: 1.000 Intron 1 15662 15468 ( 195 n); Pd: 1.000 Pa: 0.899 Exon 2 15467 15092 ( 376 n); score: 1.000 Intron 2 15091 14990 ( 102 n); Pd: 0.995 Pa: 0.993 Exon 3 14989 14878 ( 112 n); score: 1.000 PGS (15845 15663,15467 15092,14989 14878) SGN-E373064+ PGS (15845 15663,15467 15133) SGN-E292704+ 3-phase translation of AGS-1 (-strand): . . . . . . 15845 AGGCTGGAACATGGAAGATGTTCTGGAGGAAGAAATTAAAGTAATTAAAGCTATGGTAGG R L E H G R C S G G R N - S N - S Y G R G W N M E D V L E E E I K V I K A M V G A G T W K M F W R K K L K - L K L W - . . . . . . 15785 ACCTGAAGATCATGTGATTTGTGCTTTATCTGGTGGTGTTGATTCCACAGTTGCAGCTAC T - R S C D L C F I W W C - F H S C S Y P E D H V I C A L S G G V D S T V A A T D L K I M - F V L Y L V V L I P Q L Q L . . . . . . 15725 CGTGGTACACAAGGCTATTGGAGACAGGCTTCACTGTGTTTTTGTTGATAATGGTCTTTT R G T Q G Y W R Q A S L C F C - - W S F V V H K A I G D R L H C V F V D N G L L P W Y T R L L E T G F T V F L L I M V F . : . . . . . 15665 AAG : GTACAAGGAGAGAGAAAGAGTGATGGCAACCTTTGAGAGTGACCTTCATTTGCCCGT K : V Q G E R K S D G N L - E - P S F A R R : Y K E R E R V M A T F E S D L H L P V - : G T R R E K E - W Q P L R V T F I C P . . . . . . 15410 TACCTGCGTTGATGCTACAGAAGAATTTCTCAGCAAACTAAAAGGTGTGACAGAGCCTGA Y L R - C Y R R I S Q Q T K R C D R A - T C V D A T E E F L S K L K G V T E P E L P A L M L Q K N F S A N - K V - Q S L . . . . . . 15350 AATGAAAAGGAAAATTATTGGGAAGGAGTTCATCAACATATTTGATATTTTCGCCCATGA N E K E N Y W E G V H Q H I - Y F R P - M K R K I I G K E F I N I F D I F A H D K - K G K L L G R S S S T Y L I F S P M . . . . . . 15290 TTTAGAGAAAAAAGTGGGAAAGAAACCTGCTTACCTAGTCCAAGGAACATTGTATCCTGA F R E K S G K E T C L P S P R N I V S - L E K K V G K K P A Y L V Q G T L Y P D I - R K K W E R N L L T - S K E H C I L . . . . . . 15230 TGTAATAGAGTCGTGTCCCCCACCTGGAAGTGGAAGAACACATTCACATACGATCAAGAG C N R V V S P T W K W K N T F T Y D Q E V I E S C P P P G S G R T H S H T I K S M - - S R V P H L E V E E H I H I R S R . . . . . . 15170 CCATCATAATGTTGGAGGGCTCCCAAAGGACATGAAGCTGAAGCTCATCGAGCCACTGAA P S - C W R A P K G H E A E A H R A T E H H N V G G L P K D M K L K L I E P L K A I I M L E G S Q R T - S - S S S S H - . . : . . . . 15110 ACTTCTGTTCAAGGATGAG : GTTCGTGCAATGGGAAAGATTATGAATATCCCTGTGGCTTT T S V Q G - : G S C N G K D Y E Y P C G F L L F K D E : V R A M G K I M N I P V A F N F C S R M R : F V Q W E R L - I S L W L . . . . . . 14948 TCTCAGGCGTCACCCATTTCCTGGTCCGGGACTTGCTGTCCGAATTCCAGGAGATGTCAC S Q A S P I S W S G T C C P N S R R C H L R R H P F P G P G L A V R I P G D V T F S G V T H F L V R D L L S E F Q E M S . . 14888 AGCAGGGAATT S R E A G N Q Q G I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-4_AGS-1_PPS_1 (15844 15663,15467 15092,14989 14879) (frame '2'; 669 bp, 223 residues) 1 GWNMEDVLEE EIKVIKAMVG PEDHVICALS GGVDSTVAAT VVHKAIGDRL HCVFVDNGLL 61 RYKERERVMA TFESDLHLPV TCVDATEEFL SKLKGVTEPE MKRKIIGKEF INIFDIFAHD 121 LEKKVGKKPA YLVQGTLYPD VIESCPPPGS GRTHSHTIKS HHNVGGLPKD MKLKLIEPLK 181 LLFKDEVRAM GKIMNIPVAF LRRHPFPGPG LAVRIPGDVT AGN PGL 5 (- strand): 17262 16726 AGS-1 (17262 16726) SCR (e 0.994) Exon 1 17262 16726 ( 537 n); score: 0.994 PGS (17262 16726) SGN-E320675+ 3-phase translation of AGS-1 (-strand): . . . . . . 17262 TCCTTTTTCCGGCAATGGAACCTCTAACTCAGGCGAAGAAATCCAACCTCGTACTCATCC S F F R Q W N L - L R R R N P T S Y S S P F S G N G T S N S G E E I Q P R T H P L F P A M E P L T Q A K K S N L V L I . . . . . . 17202 TAGATTACGGTTCTCAATACACCCATCTCATCACTCGCCGAATTCGAAGTTTATCAGTTT - I T V L N T P I S S L A E F E V Y Q F R L R F S I H P S H H S P N S K F I S F L D Y G S Q Y T H L I T R R I R S L S V . . . . . . 17142 TCTCACTCTGTATCAATGGCACTTCTTCGTTAGACTCCATAACCGAGCTCAACCCTCGTG S H S V S M A L L R - T P - P S S T L V L T L Y Q W H F F V R L H N R A Q P S C F S L C I N G T S S L D S I T E L N P R . . . . . . 17082 TTATTATCCTTTCAGGTGGACCTCACAGTGTCCACGCTGACGGTGCGCCGTGTTTTCCTT L L S F Q V D L T V S T L T V R R V F L Y Y P F R W T S Q C P R - R C A V F S F V I I L S G G P H S V H A D G A P C F P . . . . . . 17022 CTGGCTTTATTGAGTATGTGGAGTCGCAAGGGATTCATGTGTTGGGGATTTGTTATGGGT L A L L S M W S R K G F M C W G F V M G W L Y - V C G V A R D S C V G D L L W V S G F I E Y V E S Q G I H V L G I C Y G . . . . . . 16962 TGCAGTTGCTTGTACAGAACCTTGGTGGAGTTGTGAAGGTTGGGGAGAAGCATGAGTATG C S C L Y R T L V E L - R L G R S M S M A V A C T E P W W S C E G W G E A - V W L Q L L V Q N L G G V V K V G E K H E Y . . . . . . 16902 GGAGAATGGAAATTGAGGTTCAGAAGAATAGTGGGTTGTTTGGGAATAAGCAAATTGGGG G E W K L R F R R I V G C L G I S K L G E N G N - G S E E - W V V W E - A N W G G R M E I E V Q K N S G L F G N K Q I G . . . . . . 16842 ATAAACAGGTTGTTTGGATGAGCCATGGTGATGAGGCTGTGAAATTGCCGGAAGGGTTTG I N R L F G - A M V M R L - N C R K G L - T G C L D E P W - - G C E I A G R V - D K Q V V W M S H G D E A V K L P E G F . . . . . . 16782 AGGTTGTGGCGAGGAGTAATCAGGGAGCTGTTGCTGCCATTGAGAATAGGGAAAAAA R L W R G V I R E L L L P L R I G K K G C G E E - S G S C C C H - E - G K E V V A R S N Q G A V A A I E N R E K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-5_AGS-1_PPS_1 (17260 16727) (frame '0'; 534 bp, 178 residues) 1 LFPAMEPLTQ AKKSNLVLIL DYGSQYTHLI TRRIRSLSVF SLCINGTSSL DSITELNPRV 61 IILSGGPHSV HADGAPCFPS GFIEYVESQG IHVLGICYGL QLLVQNLGGV VKVGEKHEYG 121 RMEIEVQKNS GLFGNKQIGD KQVVWMSHGD EAVKLPEGFE VVARSNQGAV AAIENREK 3-phase translation of AGS-1 (+strand): . . . . . . 16726 TTTTTTCCCTATTCTCAATGGCAGCAACAGCTCCCTGATTACTCCTCGCCACAACCTCAA F F P Y S Q W Q Q Q L P D Y S S P Q P Q F F P I L N G S N S S L I T P R H N L K F S L F S M A A T A P - L L L A T T S . . . . . . 16786 ACCCTTCCGGCAATTTCACAGCCTCATCACCATGGCTCATCCAAACAACCTGTTTATCCC T L P A I S Q P H H H G S S K Q P V Y P P F R Q F H S L I T M A H P N N L F I P N P S G N F T A S S P W L I Q T T C L S . . . . . . 16846 CAATTTGCTTATTCCCAAACAACCCACTATTCTTCTGAACCTCAATTTCCATTCTCCCAT Q F A Y S Q T T H Y S S E P Q F P F S H N L L I P K Q P T I L L N L N F H S P I P I C L F P N N P L F F - T S I S I L P . . . . . . 16906 ACTCATGCTTCTCCCCAACCTTCACAACTCCACCAAGGTTCTGTACAAGCAACTGCAACC T H A S P Q P S Q L H Q G S V Q A T A T L M L L P N L H N S T K V L Y K Q L Q P Y S C F S P T F T T P P R F C T S N C N . . . . . . 16966 CATAACAAATCCCCAACACATGAATCCCTTGCGACTCCACATACTCAATAAAGCCAGAAG H N K S P T H E S L A T P H T Q - S Q K I T N P Q H M N P L R L H I L N K A R R P - Q I P N T - I P C D S T Y S I K P E . . . . . . 17026 GAAAACACGGCGCACCGTCAGCGTGGACACTGTGAGGTCCACCTGAAAGGATAATAACAC E N T A H R Q R G H C E V H L K G - - H K T R R T V S V D T V R S T - K D N N T G K H G A P S A W T L - G P P E R I I T . . . . . . 17086 GAGGGTTGAGCTCGGTTATGGAGTCTAACGAAGAAGTGCCATTGATACAGAGTGAGAAAA E G - A R L W S L T K K C H - Y R V R K R V E L G Y G V - R R S A I D T E - E N R G L S S V M E S N E E V P L I Q S E K . . . . . . 17146 CTGATAAACTTCGAATTCGGCGAGTGATGAGATGGGTGTATTGAGAACCGTAATCTAGGA L I N F E F G E - - D G C I E N R N L G - - T S N S A S D E M G V L R T V I - D T D K L R I R R V M R W V Y - E P - S R . . . . . . 17206 TGAGTACGAGGTTGGATTTCTTCGCCTGAGTTAGAGGTTCCATTGCCGGAAAAAGGA - V R G W I S S P E L E V P L P E K G E Y E V G F L R L S - R F H C R K K M S T R L D F F A - V R G S I A G K R Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-5_AGS-1_PPS_1 (16727 17071) (frame '2'; 342 bp, 114 residues) 1 FFPILNGSNS SLITPRHNLK PFRQFHSLIT MAHPNNLFIP NLLIPKQPTI LLNLNFHSPI 61 LMLLPNLHNS TKVLYKQLQP ITNPQHMNPL RLHILNKARR KTRRTVSVDT VRST- PGL 6 (- strand): 24789 23330 AGS-1 (24789 24708,24598 24426,24288 24227,23674 23330) SCR (e 1.000 d 0.971 a 0.976,e 1.000 d 0.000 a 0.998,e 1.000 d 0.946 a 0.930,e 0.991) Exon 1 24789 24708 ( 82 n); score: 1.000 Intron 1 24707 24599 ( 109 n); Pd: 0.971 Pa: 0.976 Exon 2 24598 24426 ( 173 n); score: 1.000 Intron 2 24425 24289 ( 137 n); Pd: 0.000 Pa: 0.998 Exon 3 24288 24227 ( 62 n); score: 1.000 Intron 3 24226 23675 ( 552 n); Pd: 0.946 Pa: 0.930 Exon 4 23674 23330 ( 345 n); score: 0.991 PGS (24789 24708,24598 24426,24288 24227,23674 23330) SGN-E346504+ 3-phase translation of AGS-1 (-strand): . . . . . . 24789 ACATTATGGTTTTTCTCTTCTGGTGTCTGAATCAACTTGCGTGCAGATTGATTGATTAGA T L W F F S S G V - I N L R A D - L I R H Y G F S L L V S E S T C V Q I D - L D I M V F L F W C L N Q L A C R L I D - . . . : . . . 24729 TATCTGTTATCTCCAACATCAG : GGAAAAGTGTTCATTTGTGATGGAGAAAAAGAGATCAT Y L L S P T S : G K S V H L - W R K R D H I C Y L Q H Q : G K V F I C D G E K E I I I S V I S N I R : E K C S F V M E K K R S . . . . . . 24560 CAAGAAATCCACATCAGATAGATAAGAGTCAGCTTAATTGTATGTGGGGATTGATTAGTA Q E I H I R - I R V S L I V C G D - L V K K S T S D R - E S A - L Y V G I D - - S R N P H Q I D K S Q L N C M W G L I S . . . . . . 24500 GCCTTTATTTTGGTCAAAATCAGAGGAAACAGAAGCTGCTGTCAAATGGGAAAGGTTCTA A F I L V K I R G N R S C C Q M G K V L P L F W S K S E E T E A A V K W E R F Y S L Y F G Q N Q R K Q K L L S N G K G S . . : . . . . 24440 CAAAGAATGTTATAG : GCAAAAATTCAAGAAAGATTGATGCTTTAACTTACTGTAGCGACC Q R M L - : A K I Q E R L M L - L T V A T K E C Y R : Q K F K K D - C F N L L - R P T K N V I : G K N S R K I D A L T Y C S D . . : . . . . 24243 AATTGTATGGCTATGAG : GATGGAGCTGAAGTGGAAGCTTTAGGAGTTCGTACGGGTGATA N C M A M R : M E L K W K L - E F V R V I I V W L - : G W S - S G S F R S S Y G - - Q L Y G Y E : D G A E V E A L G V R T G D . . . . . . 23631 AAAGGATAAAGACTTCGATTCACGAAGAAATTTCTGGTGAAATGCAGAAGAGCACTCAAA K G - R L R F T K K F L V K C R R A L K K D K D F D S R R N F W - N A E E H S N K R I K T S I H E E I S G E M Q K S T Q . . . . . . 23571 TTATAGCCCGAAATGAGCAACACGAAGAAGTAGATTATGGACTATTTGATCATATGATAA L - P E M S N T K K - I M D Y L I I - - Y S P K - A T R R S R L W T I - S Y D K I I A R N E Q H E E V D Y G L F D H M I . . . . . . 23511 GTAAATACAAGCCATCGCCAAAGAAGGGCTGTAAGAATCAGTCACCTGTTTACGATTGGA V N T S H R Q R R A V R I S H L F T I G - I Q A I A K E G L - E S V T C L R L E S K Y K P S P K K G C K N Q S P V Y D W . . . . . . 23451 AGGATACTGAGACCGGGGATATTCAGCAGGCTTCAAGTTCAGCGGAAATGTCTATTCATA R I L R P G I F S R L Q V Q R K C L F I G Y - D R G Y S A G F K F S G N V Y S - K D T E T G D I Q Q A S S S A E M S I H . . . . . . 23391 AGTTAAAATTGGCATCCATATTAGAAGCTATCGGCAGTCAAATTCATCGAGAAGATGGGG S - N W H P Y - K L S A V K F I E K M G V K I G I H I R S Y R Q S N S S R R W G K L K L A S I L E A I G S Q I H R E D G . 23331 AT D Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-6_AGS-1_PPS_1 (24730 24708,24598 24426,24288 24227,23674 23330) (frame '0'; 603 bp, 201 residues) 1 ISVISNIREK CSFVMEKKRS SRNPHQIDKS QLNCMWGLIS SLYFGQNQRK QKLLSNGKGS 61 TKNVIGKNSR KIDALTYCSD QLYGYEDGAE VEALGVRTGD KRIKTSIHEE ISGEMQKSTQ 121 IIARNEQHEE VDYGLFDHMI SKYKPSPKKG CKNQSPVYDW KDTETGDIQQ ASSSAEMSIH 181 KLKLASILEA IGSQIHREDG D PGL 7 (+ strand): 33288 34415 AGS-1 (33288 33381,33695 33803,33944 34415) SCR (e 1.000 d 0.999 a 0.971,e 0.991 d 0.998 a 0.991,e 0.998) Exon 1 33288 33381 ( 94 n); score: 1.000 Intron 1 33382 33694 ( 313 n); Pd: 0.999 Pa: 0.971 Exon 2 33695 33803 ( 109 n); score: 0.991 Intron 2 33804 33943 ( 140 n); Pd: 0.998 Pa: 0.991 Exon 3 33944 34415 ( 472 n); score: 0.998 PGS (33288 33381,33695 33803,33944 34415) SGN-E250476+ PGS (33288 33381,33695 33803,33944 34263) SGN-E253143+ 3-phase translation of AGS-1 (+strand): . . . . . . 33288 AATTTTTTGATGATCGTGAGGAATGTAGAGAAGCTTTACAGTATGTTGATGAACTTCACC N F L M I V R N V E K L Y S M L M N F T I F - - S - G M - R S F T V C - - T S P F F D D R E E C R E A L Q Y V D E L H . . . . : . . 33348 AAGCTGGAATTGACACAAGTGAATTCCCATGGCG : GTTACCAGAGAGTCACTGATATGATG K L E L T Q V N S H G : G Y Q R V T D M M S W N - H K - I P M A : V T R E S L I - C Q A G I D T S E F P W R : L P E S H - Y D . . . . . . 33721 CCATAAGGTGTATGTTAAGATCTTGACAGTGTGCTCACAGCAGATAGCCATTGTGGAGTG P - G V C - D L D S V L T A D S H C G V H K V Y V K I L T V C S Q Q I A I V E C A I R C M L R S - Q C A H S R - P L W S . . . : . . . 33781 CCCATTAAGCTTGAATCAACATT : ATTACCACTTATGCCGCCATTAATGGTGATTTTCTAG P I K L E S T L : L P L M P P L M V I F - P L S L N Q H : Y Y H L C R H - W - F S R A H - A - I N I : I T T Y A A I N G D F L . . . . . . 33981 AAAAACGGCAACACAACTCCCAAAGCAAACTCCAGCTTTGTAAGATCCTATAGCCTGATT K N G N T T P K A N S S F V R S Y S L I K T A T Q L P K Q T P A L - D P I A - F E K R Q H N S Q S K L Q L C K I L - P D . . . . . . 34041 TTGACTGGGATCTCCATATCTAGAATGAGATTCATTAAGGGGCTTCACGGCTCTCCCACG L T G I S I S R M R F I K G L H G S P T - L G S P Y L E - D S L R G F T A L P R F D W D L H I - N E I H - G A S R L S H . . . . . . 34101 TTTCATTGAATTATGTTTGTATAGAGAAGTACAAAGAAATGAAGAGCAATTATTGAGTTG F H - I M F V - R S T K K - R A I I E L F I E L C L Y R E V Q R N E E Q L L S - V S L N Y V C I E K Y K E M K S N Y - V . . . . . . 34161 AGATGCTGTTCTAGTGGAAGATCTTTCTTCAGAATTGGGCATCTACTCTAGGCTATATAG R C C S S G R S F F R I G H L L - A I - D A V L V E D L S S E L G I Y S R L Y S E M L F - W K I F L Q N W A S T L G Y I . . . . . . 34221 CACACAATTGTCTGTTATCTCTTTAAGTCTTGGTGGACTGAGTAATCCGGTATTTATGCA H T I V C Y L F K S W W T E - S G I Y A T Q L S V I S L S L G G L S N P V F M Q A H N C L L S L - V L V D - V I R Y L C . . . . . . 34281 GGTGGGAGGTAAACCTGGTCGATTAGTCAAGGTGTGCACAAGTTAGTCTAGCCGTTACCA G G R - T W S I S Q G V H K L V - P L P V G G K P G R L V K V C T S - S S R Y H R W E V N L V D - S R C A Q V S L A V T . . . . . . 34341 TTGTAACAAAAAGTTCTCTGTTATCTCTACTCTCTATCTACTTTCTTGGCAATGTCTCTG L - Q K V L C Y L Y S L S T F L A M S L C N K K F S V I S T L Y L L S W Q C L C I V T K S S L L S L L S I Y F L G N V S . . 34401 TGTCTGCCTCCTGAA C L P P E V C L L V S A S - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (+ strand): 36451 38890 AGS-1 (36451 36850,38185 38343,38443 38554,38821 38890) SCR (e 0.998 d 0.992 a 0.978,e 1.000 d 0.992 a 0.980,e 1.000 d 0.994 a 0.831,e 0.986) Exon 1 36451 36850 ( 400 n); score: 0.998 Intron 1 36851 38184 (1334 n); Pd: 0.992 Pa: 0.978 Exon 2 38185 38343 ( 159 n); score: 1.000 Intron 2 38344 38442 ( 99 n); Pd: 0.992 Pa: 0.980 Exon 3 38443 38554 ( 112 n); score: 1.000 Intron 3 38555 38820 ( 266 n); Pd: 0.994 Pa: 0.831 Exon 4 38821 38890 ( 70 n); score: 0.986 PGS (36451 36850,38185 38343,38443 38554,38821 38890) SGN-E332021+ PGS (36451 36850,38185 38343,38443 38552) SGN-E328320+ PGS (36535 36850,38185 38222) SGN-E323921+ 3-phase translation of AGS-1 (+strand): . . . . . . 36451 TTTGTGATTGTCAGTAGCTCTTCTTGGAAAAACAGTAGATCCAAGTCCACTCATCAAACT F V I V S S S S W K N S R S K S T H Q T L - L S V A L L G K T V D P S P L I K L C D C Q - L F L E K Q - I Q V H S S N . . . . . . 36511 CATAATTTTCCCCTTTGAATTCACCATTTGTATGATTGGGAAGTAAATAGCAGTTCACCT H N F P L - I H H L Y D W E V N S S S P I I F P F E F T I C M I G K - I A V H L S - F S P L N S P F V - L G S K - Q F T . . . . . . 36571 TTTTCCTTTTTTCTTCACTGATTCTTCATATTTTCAAGAATTGTTTGTTTTTCTGTTAAT F S F F L H - F F I F S R I V C F S V N F P F F F T D S S Y F Q E L F V F L L I F F L F S S L I L H I F K N C L F F C - . . . . . . 36631 ACATTTGTATTGTGATGAGCTAGCTGTGAACCCATCAAGGAAAAAAAGGGATTTTTAAAA T F V L - - A S C E P I K E K K G F L K H L Y C D E L A V N P S R K K R D F - N Y I C I V M S - L - T H Q G K K G I F K . . . . . . 36691 TTGAAATTAAGAGAACCCCATGGATTTTCTGAGAATTACTTCTGTAATTTTCATCTGTGG L K L R E P H G F S E N Y F C N F H L W - N - E N P M D F L R I T S V I F I C G I E I K R T P W I F - E L L L - F S S V . . . . . . 36751 AGTTCTACTGAACTTTCCTGCTATAGTTACAGCTGGTGATATAGTTCATGATGATGACTT S S T E L S C Y S Y S W - Y S S - - - L V L L N F P A I V T A G D I V H D D D L E F Y - T F L L - L Q L V I - F M M M T . . . . : . . 36811 AGCTCCCAAGAAGCCTGGTTGTGAGAATGATTTTGTGCTG : GTGAAAGTTCAAACTTGGAT S S Q E A W L - E - F C A : G E S S N L D A P K K P G C E N D F V L : V K V Q T W I - L P R S L V V R M I L C W : - K F K L G . . . . . . 38205 TAATGGGGAAGAAGATGCAGAGTTTGTTGGTGTTGGTGCTAGATTTGGCACTACTATTGT - W G R R C R V C W C W C - I W H Y Y C N G E E D A E F V G V G A R F G T T I V L M G K K M Q S L L V L V L D L A L L L . . . . . . 38265 GTCAAAGGAGAAAAATGCACAACAAACTCCGCTTACTCTTTCTGACCCTCGAGATTGTTG V K G E K C T T N S A Y S F - P S R L L S K E K N A Q Q T P L T L S D P R D C C C Q R R K M H N K L R L L F L T L E I V . . : . . . . 38325 TAAGCCTCCAAGGAAAAAG : CTTTCTGGAGAAGTCGTCATGGTAGATCGCGGCCATTGCAA - A S K E K : A F W R S R H G R S R P L Q K P P R K K : L S G E V V M V D R G H C K V S L Q G K S : F L E K S S W - I A A I A . . . . . . 38484 ATTCACAACGAAGGCTAATAATGCTGAAGCAGCAGGGGCTTCGGCAATCCTGATAGTAAA I H N E G - - C - S S R G F G N P D S K F T T K A N N A E A A G A S A I L I V N N S Q R R L I M L K Q Q G L R Q S - - - . . : . . . . 38544 TAATCAAAAAG : AACTCTACAAGATGGTTTGTGATCCTGGAGAAACTGACCTAGATATACA - S K R : T L Q D G L - S W R N - P R Y T N Q K : E L Y K M V C D P G E T D L D I H I I K K : N S T R W F V I L E K L T - I Y . . . 38870 CATTCCTGCTGTTATGCTACC H S C C Y A T I P A V M L T F L L L C Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-8_AGS-1_PPS_1 (36701 36850,38185 38343,38443 38554,38821 38888) (frame '2'; 489 bp, 163 residues) 1 ENPMDFLRIT SVIFICGVLL NFPAIVTAGD IVHDDDLAPK KPGCENDFVL VKVQTWINGE 61 EDAEFVGVGA RFGTTIVSKE KNAQQTPLTL SDPRDCCKPP RKKLSGEVVM VDRGHCKFTT 121 KANNAEAAGA SAILIVNNQK ELYKMVCDPG ETDLDIHIPA VML PGL 9 (+ strand): 40739 44542 AGS-1 (40739 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43820,43916 43999,44197 44542) SCR (e 0.950 d 0.943 a 0.996,e 1.000 d 0.938 a 0.998,e 1.000 d 0.995 a 0.994,e 1.000 d 0.836 a 0.551,e 1.000 d 0.403 a 0.996,e 1.000 d 0.870 a 0.999,e 1.000 d 0.957 a 0.996,e 1.000 d 0.999 a 0.833,e 1.000) Exon 1 40739 40830 ( 92 n); score: 0.950 Intron 1 40831 41482 ( 652 n); Pd: 0.943 Pa: 0.996 Exon 2 41483 41517 ( 35 n); score: 1.000 Intron 2 41518 42008 ( 491 n); Pd: 0.938 Pa: 0.998 Exon 3 42009 42165 ( 157 n); score: 1.000 Intron 3 42166 42596 ( 431 n); Pd: 0.995 Pa: 0.994 Exon 4 42597 42650 ( 54 n); score: 1.000 Intron 4 42651 43108 ( 458 n); Pd: 0.836 Pa: 0.551 Exon 5 43109 43201 ( 93 n); score: 1.000 Intron 5 43202 43285 ( 84 n); Pd: 0.403 Pa: 0.996 Exon 6 43286 43428 ( 143 n); score: 1.000 Intron 6 43429 43749 ( 321 n); Pd: 0.870 Pa: 0.999 Exon 7 43750 43820 ( 71 n); score: 1.000 Intron 7 43821 43915 ( 95 n); Pd: 0.957 Pa: 0.996 Exon 8 43916 43999 ( 84 n); score: 1.000 Intron 8 44000 44196 ( 197 n); Pd: 0.999 Pa: 0.833 Exon 9 44197 44542 ( 346 n); score: 1.000 PGS (40739 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43815) SGN-E393966+ PGS (40741 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43410) SGN-E202287+ PGS (41476 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43820,43916 43999,44197 44399) SGN-E557064+ PGS (43163 43201,43286 43428,43750 43820,43916 43999,44197 44244) SGN-E307890+ PGS (43286 43428,43750 43820,43916 43999,44197 44542) SGN-E397636- PGS (43296 43428,43750 43820,43916 43999,44197 44538) SGN-E397533- PGS (43317 43428,43750 43820,43916 43999,44197 44280) SGN-E216937+ PGS (43327 43428,43750 43820,43916 43999,44197 44508) SGN-E262051+ PGS (43327 43428,43750 43820,43916 43999,44197 44505) SGN-E263102+ PGS (43334 43428,43750 43820,43916 43999,44197 44542) SGN-E396887- PGS (43985 43999,44197 44542) SGN-E216636- PGS (44347 44508) SGN-E254745+ 3-phase translation of AGS-1 (+strand): . . . . . . 40739 CTTCTTGCTTCTTGTTTGTTTTGTACAAGTTAATGAGGTTCACATGGTTCTTTGAAATCT L L A S C L F C T S - - G S H G S L K S F L L L V C F V Q V N E V H M V L - N L S C F L F V L Y K L M R F T W F F E I . . . . : . . 40799 TAGTGGTTCTCTTCTGCATCGGTGGTGTGGAG : GGGCTACAAACTTGCTTAGTTGCCTTGC - W F S S A S V V W R : G Y K L A - L P C S G S L L H R W C G : G A T N L L S C L A L V V L F C I G G V E : G L Q T C L V A L . : . . . . . 41511 TAGCTAG : GTGGTTTAAGCCTACGGGAGAGTCATACATTAAAGTACCCATTTTTGGTGCAG - L : G G L S L R E S H T L K Y P F L V Q S - : V V - A Y G R V I H - S T H F W C S L A R : W F K P T G E S Y I K V P I F G A . . . . . . 42062 TTTCTTATCTTACTTTGGCTGTTTCGCCATTCTGCATAACTTTTGCAGTGGTTTGGGCAA F L I L L W L F R H S A - L L Q W F G Q F L S Y F G C F A I L H N F C S G L G N V S Y L T L A V S P F C I T F A V V W A . . . . . : . 42122 TGTACAGAAATTCTTCTTTTGGCTGGATAGGTCAAGACATACTT : GGCATTGCACTTATAA C T E I L L L A G - V K T Y L : A L H L - V Q K F F F W L D R S R H T : W H C T Y N M Y R N S S F G W I G Q D I L : G I A L I . . . . : . . 42613 TTACAGTTCTGCAAATTGTGCGGATACCTAATCTCAAG : GTTGGTTCAGTTCTTTTGGGTT L Q F C K L C G Y L I S R : L V Q F F W V Y S S A N C A D T - S Q : G W F S S F G L I T V L Q I V R I P N L K : V G S V L L G . . . . . . 43131 GCGCCTTCATCTACGACATATTTTGGGTATTTGCTTCTCAGAGTCTCTTCCATGAAAGTG A P S S T T Y F G Y L L L R V S S M K V R L H L R H I L G I C F S E S L P - K C C A F I Y D I F W V F A S Q S L F H E S . . : . . . . 43191 TGATGATTGTG : GTAGCTCGTGGTGATAAAAGTGGAGAAGATGGTATTCCAATGCTGCTGA - - L W : - L V V I K V E K M V F Q C C - D D C : G S S W - - K W R R W Y S N A A E V M I V : V A R G D K S G E D G I P M L L . . . . . . 43335 AGATTCCACGACTATTTGATCCATGGGGTGGTTACAGCATTATCGGCTTTGGTGACATCC R F H D Y L I H G V V T A L S A L V T S D S T T I - S M G W L Q H Y R L W - H P K I P R L F D P W G G Y S I I G F G D I . . . . : . . 43395 TATTGCCTGGACTGCTAGTAGCATTTTCACTTAG : GTATGATTGGCTTGCAAAGAAGAATC Y C L D C - - H F H L : G M I G L Q R R I I A W T A S S I F T - : V - L A C K E E S L L P G L L V A F S L R : Y D W L A K K N . . . . . : . 43776 TTCGAGCTGGTTACTTCTTGTGGGCAATGATTGCATATGGATTAG : GTCTTCTTATAACAT F E L V T S C G Q - L H M D - : V F L - H S S W L L L V G N D C I W I R : S S Y N I L R A G Y F L W A M I A Y G L : G L L I T . . . . . . 43931 ATGTAGCATTGAACTTAATGGATGGTCATGGCCAACCTGCACTTCTTTACATCGTCCCAT M - H - T - W M V M A N L H F F T S S H C S I E L N G W S W P T C T S L H R P I Y V A L N L M D G H G Q P A L L Y I V P . : . . . . . 43991 TTACCCTCG : GGACCTTTTTGATGCTGGGGAGAAAGAGAGGTGACCTGAAAATTCTTTGGA L P S : G P F - C W G E R E V T - K F F G Y P R : D L F D A G E K E R - P E N S L D F T L : G T F L M L G R K R G D L K I L W . . . . . . 44248 CAAAGGGTGAACCAGAAAGGGTGTGTCCACATGTTCGTCTCGAATCAATCGAGGAATCGA Q R V N Q K G C V H M F V S N Q S R N R K G - T R K G V S T C S S R I N R G I E T K G E P E R V C P H V R L E S I E E S . . . . . . 44308 ATCGAGAAGGATAAGGATAATCTTCCTCTTGTAATTATATAACTACATACTGACCTAAAT I E K D K D N L P L V I I - L H T D L N S R R I R I I F L L - L Y N Y I L T - M N R E G - G - S S S C N Y I T T Y - P K . . . . . . 44368 GTTATCAATCATTCATCATTCTGGTATTATTTAGCTGTTTTAAGGCTTAGCAAAATCTTC V I N H S S F W Y Y L A V L R L S K I F L S I I H H S G I I - L F - G L A K S S C Y Q S F I I L V L F S C F K A - Q N L . . . . . . 44428 AGTTGTTAAGTACACACACATTTGATATGCCAGTTATTAATGTACAGCTGATTGATCAGC S C - V H T H L I C Q L L M Y S - L I S V V K Y T H I - Y A S Y - C T A D - S A Q L L S T H T F D M P V I N V Q L I D Q . . . . . . 44488 ATTTGTCACTTTGGTGAAAAATAGTGCAGTTGCTGCTCAACTTTTATTATTGTCT I C H F G E K - C S C C S T F I I V F V T L V K N S A V A A Q L L L L S H L S L W - K I V Q L L L N F Y Y C Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-9_AGS-1_PPS_1 (40741 40830,41483 41517,42009 42165,42597 42650,43109 43201,43286 43428,43750 43820,43916 43999,44197 44321) (frame '0'; 849 bp, 283 residues) 1 SCFLFVLYKL MRFTWFFEIL VVLFCIGGVE GLQTCLVALL ARWFKPTGES YIKVPIFGAV 61 SYLTLAVSPF CITFAVVWAM YRNSSFGWIG QDILGIALII TVLQIVRIPN LKVGSVLLGC 121 AFIYDIFWVF ASQSLFHESV MIVVARGDKS GEDGIPMLLK IPRLFDPWGG YSIIGFGDIL 181 LPGLLVAFSL RYDWLAKKNL RAGYFLWAMI AYGLGLLITY VALNLMDGHG QPALLYIVPF 241 TLGTFLMLGR KRGDLKILWT KGEPERVCPH VRLESIEESN REG- AGS-2 (42597 42650,43109 43201,43290 43428,43750 43820,43916 43999,44197 44477) SCR (e 1.000 d 0.836 a 0.551,e 1.000 d 0.403 a 0.798,e 1.000 d 0.870 a 0.999,e 1.000 d 0.957 a 0.996,e 1.000 d 0.999 a 0.833,e 1.000) Exon 1 42597 42650 ( 54 n); score: 1.000 Intron 1 42651 43108 ( 458 n); Pd: 0.836 Pa: 0.551 Exon 2 43109 43201 ( 93 n); score: 1.000 Intron 2 43202 43289 ( 88 n); Pd: 0.403 Pa: 0.798 Exon 3 43290 43428 ( 139 n); score: 1.000 Intron 3 43429 43749 ( 321 n); Pd: 0.870 Pa: 0.999 Exon 4 43750 43820 ( 71 n); score: 1.000 Intron 4 43821 43915 ( 95 n); Pd: 0.957 Pa: 0.996 Exon 5 43916 43999 ( 84 n); score: 1.000 Intron 5 44000 44196 ( 197 n); Pd: 0.999 Pa: 0.833 Exon 6 44197 44477 ( 281 n); score: 1.000 PGS (42597 42650,43109 43201,43290 43428,43750 43820,43916 43999,44197 44477) SGN-E347939+ 3-phase translation of AGS-2 (+strand): . . . . . . : 42597 GGCATTGCACTTATAATTACAGTTCTGCAAATTGTGCGGATACCTAATCTCAAG : GTTGGT G I A L I I T V L Q I V R I P N L K : V G A L H L - L Q F C K L C G Y L I S R : L V H C T Y N Y S S A N C A D T - S Q : G W . . . . . . 43115 TCAGTTCTTTTGGGTTGCGCCTTCATCTACGACATATTTTGGGTATTTGCTTCTCAGAGT S V L L G C A F I Y D I F W V F A S Q S Q F F W V A P S S T T Y F G Y L L L R V F S S F G L R L H L R H I L G I C F S E . . . : . . . 43175 CTCTTCCATGAAAGTGTGATGATTGTG : CTCGTGGTGATAAAAGTGGAGAAGATGGTATTC L F H E S V M I V : L V V I K V E K M V F S S M K V - - L C : S W - - K W R R W Y S S L P - K C D D C : A R G D K S G E D G I . . . . . . 43323 CAATGCTGCTGAAGATTCCACGACTATTTGATCCATGGGGTGGTTACAGCATTATCGGCT Q C C - R F H D Y L I H G V V T A L S A N A A E D S T T I - S M G W L Q H Y R L P M L L K I P R L F D P W G G Y S I I G . . . . . : . 43383 TTGGTGACATCCTATTGCCTGGACTGCTAGTAGCATTTTCACTTAG : GTATGATTGGCTTG L V T S Y C L D C - - H F H L : G M I G L W - H P I A W T A S S I F T - : V - L A C F G D I L L P G L L V A F S L R : Y D W L . . . . . . : 43764 CAAAGAAGAATCTTCGAGCTGGTTACTTCTTGTGGGCAATGATTGCATATGGATTAG : GTC Q R R I F E L V T S C G Q - L H M D - : V K E E S S S W L L L V G N D C I W I R : S A K K N L R A G Y F L W A M I A Y G L : G . . . . . . 43919 TTCTTATAACATATGTAGCATTGAACTTAATGGATGGTCATGGCCAACCTGCACTTCTTT F L - H M - H - T - W M V M A N L H F F S Y N I C S I E L N G W S W P T C T S L L L I T Y V A L N L M D G H G Q P A L L . . . : . . . 43979 ACATCGTCCCATTTACCCTCG : GGACCTTTTTGATGCTGGGGAGAAAGAGAGGTGACCTGA T S S H L P S : G P F - C W G E R E V T - H R P I Y P R : D L F D A G E K E R - P E Y I V P F T L : G T F L M L G R K R G D L . . . . . . 44236 AAATTCTTTGGACAAAGGGTGAACCAGAAAGGGTGTGTCCACATGTTCGTCTCGAATCAA K F F G Q R V N Q K G C V H M F V S N Q N S L D K G - T R K G V S T C S S R I N K I L W T K G E P E R V C P H V R L E S . . . . . . 44296 TCGAGGAATCGAATCGAGAAGGATAAGGATAATCTTCCTCTTGTAATTATATAACTACAT S R N R I E K D K D N L P L V I I - L H R G I E S R R I R I I F L L - L Y N Y I I E E S N R E G - G - S S S C N Y I T T . . . . . . 44356 ACTGACCTAAATGTTATCAATCATTCATCATTCTGGTATTATTTAGCTGTTTTAAGGCTT T D L N V I N H S S F W Y Y L A V L R L L T - M L S I I H H S G I I - L F - G L Y - P K C Y Q S F I I L V L F S C F K A . . . . . . 44416 AGCAAAATCTTCAGTTGTTAAGTACACACACATTTGATATGCCAGTTATTAATGTACAGC S K I F S C - V H T H L I C Q L L M Y S A K S S V V K Y T H I - Y A S Y - C T A - Q N L Q L L S T H T F D M P V I N V Q . 44476 TG L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-9_AGS-2_PPS_1 (43186 43201,43290 43428,43750 43820,43916 43999,44197 44321) (frame '0'; 432 bp, 144 residues) 1 KCDDCARGDK SGEDGIPMLL KIPRLFDPWG GYSIIGFGDI LLPGLLVAFS LRYDWLAKKN 61 LRAGYFLWAM IAYGLGLLIT YVALNLMDGH GQPALLYIVP FTLGTFLMLG RKRGDLKILW 121 TKGEPERVCP HVRLESIEES NREG- PGL 10 (+ strand): 49010 52280 AGS-1 (49010 49416,50285 50580,51611 51751,51872 52212) SCR (e 1.000 d 0.993 a 0.992,e 1.000 d 1.000 a 0.980,e 1.000 d 0.997 a 0.991,e 0.991) Exon 1 49010 49416 ( 407 n); score: 1.000 Intron 1 49417 50284 ( 868 n); Pd: 0.993 Pa: 0.992 Exon 2 50285 50580 ( 296 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 Pa: 0.980 Exon 3 51611 51751 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 Pa: 0.991 Exon 4 51872 52212 ( 341 n); score: 0.991 PGS (49010 49416,50285 50432) SGN-E295861+ PGS (49012 49416,50285 50580) SGN-E549255+ PGS (49013 49416,50285 50482) SGN-E346107+ PGS (49013 49416,50285 50407) SGN-E311403+ PGS (49014 49416,50285 50401) SGN-E247831+ PGS (49014 49416,50285 50327) SGN-E296612+ PGS (49015 49416,50285 50431) SGN-E249059+ PGS (49017 49416,50285 50524) SGN-E297881+ PGS (49018 49416,50285 50580,51611 51671) SGN-E339005+ PGS (49019 49416,50285 50322) SGN-E310528+ PGS (49020 49416,50285 50402) SGN-E302665+ PGS (49023 49416,50285 50445) SGN-E278756+ PGS (49028 49416,50285 50391) SGN-E302460+ PGS (49028 49391) SGN-E287631+ PGS (49030 49416,50285 50432) SGN-E266334+ PGS (49036 49416,50285 50334) SGN-E330528+ PGS (49038 49416,50285 50440) SGN-E291245+ PGS (49038 49416,50285 50431) SGN-E294162+ PGS (49039 49416,50285 50549) SGN-E328402+ PGS (49041 49416,50285 50549) SGN-E309073+ PGS (49041 49416,50285 50429) SGN-E306314+ PGS (49042 49416,50285 50405) SGN-E331650+ PGS (49043 49416,50285 50580) SGN-E342238+ PGS (49044 49336) SGN-E310880+ PGS (49045 49416,50285 50488) SGN-E394111+ PGS (49045 49363) SGN-E304968+ PGS (49046 49416,50285 50580,51611 51687) SGN-E333565+ PGS (49048 49416,50285 50536) SGN-E285488+ PGS (49058 49416,50285 50417) SGN-E307384+ PGS (49058 49416,50285 50389) SGN-E275040+ PGS (49060 49416,50285 50548) SGN-E305748+ PGS (49060 49416,50285 50512) SGN-E304243+ PGS (49060 49416,50285 50403) SGN-E295476+ PGS (49061 49416,50285 50389) SGN-E301336+ PGS (49062 49416,50285 50474) SGN-E247338+ PGS (49062 49416,50285 50401) SGN-E307970+ PGS (49063 49416,50285 50320) SGN-E341199+ PGS (49064 49416,50285 50546) SGN-E332861+ PGS (49065 49416,50285 50551) SGN-E260288+ PGS (49065 49416,50285 50528) SGN-E310188+ PGS (49069 49416,50285 50547) SGN-E333839+ PGS (49080 49416,50285 50547) SGN-E307054+ PGS (49081 49416,50285 50580,51611 51688) SGN-E343051+ PGS (49081 49416,50285 50580,51611 51672) SGN-E539526+ PGS (49081 49416,50285 50475) SGN-E303459+ PGS (49081 49416,50285 50388) SGN-E288467+ PGS (49081 49416,50285 50370) SGN-E265051+ PGS (49081 49416) SGN-E293696+ PGS (49082 49416,50285 50371) SGN-E249350+ PGS (49105 49416,50285 50547) SGN-E306478+ PGS (49113 49416,50285 50580) SGN-E300227+ PGS (49113 49416,50285 50514) SGN-E299408+ PGS (49135 49416,50285 50391) SGN-E265524+ PGS (49188 49416,50285 50535) SGN-E259980+ PGS (49198 49416,50285 50580,51611 51751,51872 51992) SGN-E537525+ PGS (49199 49416,50285 50580,51611 51640) SGN-E275877+ PGS (49220 49416,50285 50580) SGN-E308480+ PGS (49248 49416,50285 50580,51611 51684) SGN-E295806+ PGS (49266 49416,50285 50580) SGN-E228188+ PGS (49268 49416,50285 50580,51611 51688) SGN-E331039+ PGS (49276 49416,50285 50535) SGN-E258081+ PGS (49310 49416,50285 50580,51611 51751,51872 51878) SGN-E304983+ PGS (49325 49416,50285 50392) SGN-E237795+ PGS (49326 49416,50285 50515) SGN-E232789+ PGS (49334 49416,50285 50580,51611 51751,51872 51880) SGN-E340605+ PGS (49342 49416,50285 50580,51611 51751,51872 51957) SGN-E542246- PGS (49377 49416,50285 50580,51611 51751,51872 52136) SGN-E340110+ PGS (49378 49416,50285 50580,51611 51751,51872 52177) SGN-E537523- PGS (49385 49416,50285 50580,51611 51751,51872 51881) SGN-E261309+ PGS (49386 49416,50285 50580,51611 51751,51872 52033) SGN-E256285+ PGS (49388 49416,50285 50580,51611 51751,51872 52019) SGN-E264618+ PGS (49388 49416,50285 50580,51611 51751,51872 51925) SGN-E266063+ PGS (50285 50580,51611 51751,51872 52024) SGN-E348656+ PGS (50285 50580,51611 51751,51872 51992) SGN-E286237+ PGS (50285 50580,51611 51751,51872 51941) SGN-E542248+ PGS (50285 50580,51611 51751,51872 51882) SGN-E391287+ PGS (50307 50580,51611 51751,51872 51924) SGN-E397387+ PGS (50308 50580,51611 51751,51872 51957) SGN-E373697+ PGS (50308 50580,51611 51669) SGN-E305639+ PGS (50364 50580,51611 51751,51872 52079) SGN-E299188+ PGS (50368 50580,51611 51751,51872 52177) SGN-E545730- PGS (50371 50580,51611 51751,51872 52171) SGN-E346194+ PGS (50385 50580,51611 51751,51872 52163) SGN-E272657+ PGS (50400 50580,51611 51751,51872 51957) SGN-E311689- PGS (50402 50580,51611 51751,51872 51957) SGN-E373696- PGS (50426 50580,51611 51751,51872 52159) SGN-E305291- PGS (50433 50580,51611 51751,51872 52177) SGN-E352248+ PGS (50433 50580,51611 51751,51872 52177) SGN-E352951+ PGS (50433 50580,51611 51751,51872 52151) SGN-E353392+ PGS (50434 50580,51611 51751,51872 52177) SGN-E344774+ PGS (50470 50580,51611 51751,51872 52175) SGN-E354591+ PGS (50498 50580,51611 51751,51872 52174) SGN-E304927+ PGS (51621 51751,51872 52168) SGN-E376694+ PGS (51622 51751,51872 52212) SGN-E211992+ PGS (51647 51751,51872 52168) SGN-E307229+ PGS (51676 51751,51872 52177) SGN-E221816- PGS (51684 51751,51872 52177) SGN-E221723- PGS (51693 51751,51872 52162) SGN-E225563- PGS (51725 51751,51872 52177) SGN-E237184- PGS (51741 51751,51872 52177) SGN-E300371+ PGS (51743 51751,51872 52177) SGN-E394110- 3-phase translation of AGS-1 (+strand): . . . . . . 49010 TTGCACTGACCACTCAGCACAAAGAAAGCAAAAAAAAAAAAAAGAAGAAGAAAAAAGCTT L H - P L S T K K A K K K K R R R K K L C T D H S A Q R K Q K K K K E E E K S F A L T T Q H K E S K K K K K K K K K A . . . . . . 49070 CAATCTTTGTGAAAAAATGGCAGAAAACAAGGAAGAAGATGTTAAGCTTGGAGCTAACAA Q S L - K N G R K Q G R R C - A W S - Q N L C E K M A E N K E E D V K L G A N K S I F V K K W Q K T R K K M L S L E L T . . . . . . 49130 GTTTAGGGAAACTCAACCATTAGGTACAGCAGCTCAAACAGACAAAGATTACAAAGAGCC V - G N S T I R Y S S S N R Q R L Q R A F R E T Q P L G T A A Q T D K D Y K E P S L G K L N H - V Q Q L K Q T K I T K S . . . . . . 49190 ACCACCAGCTCCATTGTTTGAACCAGGGGAGTTGTCATCATGGTCCTTTTACAGGGCTGG T T S S I V - T R G V V I M V L L Q G W P P A P L F E P G E L S S W S F Y R A G H H Q L H C L N Q G S C H H G P F T G L . . . . . . 49250 TATTGCAGAGTTCATGGCAACTTTCTTGTTCTTGTATATCACAATCTTGACTGTTATGGG Y C R V H G N F L V L V Y H N L D C Y G I A E F M A T F L F L Y I T I L T V M G V L Q S S W Q L S C S C I S Q S - L L W . . . . . . 49310 TCTTAAGAGATCTGATAGTTTATGTTCTTCAGTGGGTATTCAAGGGGTTGCTTGGGCTTT S - E I - - F M F F S G Y S R G C L G F L K R S D S L C S S V G I Q G V A W A F V L R D L I V Y V L Q W V F K G L L G L . . . . . : . 49370 TGGTGGTATGATCTTTGCTTTGGTCTACTGTACTGCTGGTATCTCAG : GAGGACACATCAA W W Y D L C F G L L Y C W Y L R : R T H Q G G M I F A L V Y C T A G I S : G G H I N L V V - S L L W S T V L L V S Q : E D T S . . . . . . 50298 CCCAGCTGTGACCTTTGGTCTTTTCTTGGCAAGGAAATTGTCCTTGACCAGGGCTGTTTT P S C D L W S F L G K E I V L D Q G C F P A V T F G L F L A R K L S L T R A V F T Q L - P L V F S W Q G N C P - P G L F . . . . . . 50358 CTACATGGTGATGCAGTGCCTTGGTGCAATCTGTGGTGCTGGTGTTGTGAAGGGCTTCAT L H G D A V P W C N L W C W C C E G L H Y M V M Q C L G A I C G A G V V K G F M S T W - C S A L V Q S V V L V L - R A S . . . . . . 50418 GGTAGGACCATACCAAAGACTTGGTGGTGGTGCTAATGTTGTTAACCCTGGATACACCAA G R T I P K T W W W C - C C - P W I H Q V G P Y Q R L G G G A N V V N P G Y T K W - D H T K D L V V V L M L L T L D T P . . . . . . 50478 GGGTGATGGCCTTGGTGCTGAAATTATTGGCACCTTTGTCCTTGTTTACACTGTTTTTTC G - W P W C - N Y W H L C P C L H C F F G D G L G A E I I G T F V L V Y T V F S R V M A L V L K L L A P L S L F T L F F . . . . . : . 50538 AGCCACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCT : ATTTTGGCACCACTTCC S H - C Q E K C Q R L T C S : Y F G T T S A T D A K R N A R D S H V P : I L A P L P Q P L M P R E M P E T H M F L : F W H H F . . . . . . 51628 TATTGGATTCGCAGTGTTCTTGGTTCATTTGGCCACCATCCCCATCACCGGAACTGGCAT Y W I R S V L G S F G H H P H H R N W H I G F A V F L V H L A T I P I T G T G I L L D S Q C S W F I W P P S P S P E L A . . . . . . 51688 CAACCCCGCCAGGAGTCTTGGAGCTGCTATCATCTACAACGACGAGCATGCATGGAATGA Q P R Q E S W S C Y H L Q R R A C M E - N P A R S L G A A I I Y N D E H A W N D S T P P G V L E L L S S T T T S M H G M . : . . . . . 51748 CCAC : TGGATCTTCTGGGTTGGACCAATGATTGGAGCTGCTCTTGCTGCTATTTACCACCA P : L D L L G W T N D W S C S C C Y L P P H : W I F W V G P M I G A A L A A I Y H Q T T : G S S G L D Q - L E L L L L L F T T . . . . . . 51928 AATAATTATCAGAGCTATGCCATTCCACAGGTCTTAAGTTATCTGTCTTTAAACAATGGG N N Y Q S Y A I P Q V L S Y L S L N N G I I I R A M P F H R S - V I C L - T M G K - L S E L C H S T G L K L S V F K Q W . . . . . . 51988 ATTCTCAAAGACTCAACAGTGTACTTTTGTCTTCTTTTTTTGGGGGGTTGAATGTTCAAG I L K D S T V Y F C L L F L G G - M F K F S K T Q Q C T F V F F F W G V E C S S D S Q R L N S V L L S S F F G G L N V Q . . . . . . 52048 TTTCTCCTTCAATGTATTTGTAATGTGGATCTGTTCCTTCTGTTAAGATGTTCTATTATG F L L Q C I C N V D L F L L L R C S I M F S F N V F V M W I C S F C - D V L L C V S P S M Y L - C G S V P S V K M F Y Y . . . . . . 52108 TGTGTAAATTATCAGGTTATGATAATGTAATGTACCTTATCAATGAAGGTTCTTTATTTT C V N Y Q V M I M - C T L S M K V L Y F V - I I R L - - C N V P Y Q - R F F I F V C K L S G Y D N V M Y L I N E G S L F . . . . . 52168 TATCTTTGAACCGCGTCTCAATTTGTTTTTCTAGTTTTGACTTGA Y L - T A S Q F V F L V L T - I F E P R L N L F F - F - L L S L N R V S I C F S S F D L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-10_AGS-1_PPS_1 (49011 49416,50285 50580,51611 51751,51872 51964) (frame '2'; 933 bp, 311 residues) 1 CTDHSAQRKQ KKKKEEEKSF NLCEKMAENK EEDVKLGANK FRETQPLGTA AQTDKDYKEP 61 PPAPLFEPGE LSSWSFYRAG IAEFMATFLF LYITILTVMG LKRSDSLCSS VGIQGVAWAF 121 GGMIFALVYC TAGISGGHIN PAVTFGLFLA RKLSLTRAVF YMVMQCLGAI CGAGVVKGFM 181 VGPYQRLGGG ANVVNPGYTK GDGLGAEIIG TFVLVYTVFS ATDAKRNARD SHVPILAPLP 241 IGFAVFLVHL ATIPITGTGI NPARSLGAAI IYNDEHAWND HWIFWVGPMI GAALAAIYHQ 301 IIIRAMPFHR S- AGS-2 (49062 49353,50479 50580,51611 51751,51872 52177) SCR (e 1.000 d 0.000 a 0.000,e 1.000 d 1.000 a 0.980,e 1.000 d 0.997 a 0.991,e 0.993) Exon 1 49062 49353 ( 292 n); score: 1.000 Intron 1 49354 50478 (1125 n); Pd: 0.000 Pa: 0.000 Exon 2 50479 50580 ( 102 n); score: 1.000 Intron 2 50581 51610 (1030 n); Pd: 1.000 Pa: 0.980 Exon 3 51611 51751 ( 141 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 Pa: 0.991 Exon 4 51872 52177 ( 306 n); score: 0.993 PGS (49062 49353,50479 50580,51611 51751,51872 52088) SGN-E549021+ PGS (49063 49353,50479 50580,51611 51751,51872 51910) SGN-E306233+ PGS (49081 49353,50479 50580,51611 51751,51872 52177) SGN-E544308- 3-phase translation of AGS-2 (+strand): . . . . . . 49062 AAAAGCTTCAATCTTTGTGAAAAAATGGCAGAAAACAAGGAAGAAGATGTTAAGCTTGGA K S F N L C E K M A E N K E E D V K L G K A S I F V K K W Q K T R K K M L S L E K L Q S L - K N G R K Q G R R C - A W . . . . . . 49122 GCTAACAAGTTTAGGGAAACTCAACCATTAGGTACAGCAGCTCAAACAGACAAAGATTAC A N K F R E T Q P L G T A A Q T D K D Y L T S L G K L N H - V Q Q L K Q T K I T S - Q V - G N S T I R Y S S S N R Q R L . . . . . . 49182 AAAGAGCCACCACCAGCTCCATTGTTTGAACCAGGGGAGTTGTCATCATGGTCCTTTTAC K E P P P A P L F E P G E L S S W S F Y K S H H Q L H C L N Q G S C H H G P F T Q R A T T S S I V - T R G V V I M V L L . . . . . . 49242 AGGGCTGGTATTGCAGAGTTCATGGCAACTTTCTTGTTCTTGTATATCACAATCTTGACT R A G I A E F M A T F L F L Y I T I L T G L V L Q S S W Q L S C S C I S Q S - L Q G W Y C R V H G N F L V L V Y H N L D . . . . . . : 49302 GTTATGGGTCTTAAGAGATCTGATAGTTTATGTTCTTCAGTGGGTATTCAAG : GGTGATGG V M G L K R S D S L C S S V G I Q : G - W L W V L R D L I V Y V L Q W V F K : G D G C Y G S - E I - - F M F F S G Y S R : V M . . . . . . 50487 CCTTGGTGCTGAAATTATTGGCACCTTTGTCCTTGTTTACACTGTTTTTTCAGCCACTGA P W C - N Y W H L C P C L H C F F S H - L G A E I I G T F V L V Y T V F S A T D A L V L K L L A P L S L F T L F F Q P L . . . . : . . 50547 TGCCAAGAGAAATGCCAGAGACTCACATGTTCCT : ATTTTGGCACCACTTCCTATTGGATT C Q E K C Q R L T C S : Y F G T T S Y W I A K R N A R D S H V P : I L A P L P I G F M P R E M P E T H M F L : F W H H F L L D . . . . . . 51637 CGCAGTGTTCTTGGTTCATTTGGCCACCATCCCCATCACCGGAACTGGCATCAACCCCGC R S V L G S F G H H P H H R N W H Q P R A V F L V H L A T I P I T G T G I N P A S Q C S W F I W P P S P S P E L A S T P . . . . . . : 51697 CAGGAGTCTTGGAGCTGCTATCATCTACAACGACGAGCATGCATGGAATGACCAC : TGGAT Q E S W S C Y H L Q R R A C M E - P : L D R S L G A A I I Y N D E H A W N D H : W I P G V L E L L S S T T T S M H G M T T : G . . . . . . 51877 CTTCTGGGTTGGACCAATGATTGGAGCTGCTCTTGCTGCTATTTACCACCAAATAATTAT L L G W T N D W S C S C C Y L P P N N Y F W V G P M I G A A L A A I Y H Q I I I S S G L D Q - L E L L L L L F T T K - L . . . . . . 51937 CAGAGCTATGCCATTCCACAGGTCTTAAGTTATCTGTCTTTAAACAATGGGATTCTCAAA Q S Y A I P Q V L S Y L S L N N G I L K R A M P F H R S - V I C L - T M G F S K S E L C H S T G L K L S V F K Q W D S Q . . . . . . 51997 GACTCAACAGTGTACTTTTGTCTTCTTTTTTTGGGGGGTTGAATGTTCAAGTTTCTCCTT D S T V Y F C L L F L G G - M F K F L L T Q Q C T F V F F F W G V E C S S F S F R L N S V L L S S F F G G L N V Q V S P . . . . . . 52057 CAATGTATTTGTAATGTGGATCTGTTCCTTCTGTTAAGATGTTCTATTATGTGTGTAAAT Q C I C N V D L F L L L R C S I M C V N N V F V M W I C S F C - D V L L C V - I S M Y L - C G S V P S V K M F Y Y V C K . . . . . . 52117 TATCAGGTTATGATAATGTAATGTACCTTATCAATGAAGGTTCTTTATTTTTATCTTTGA Y Q V M I M - C T L S M K V L Y F Y L - I R L - - C N V P Y Q - R F F I F I F E L S G Y D N V M Y L I N E G S L F L S L . 52177 A Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-10_AGS-2_PPS_1 (49300 49353,50479 50580,51611 51751,51872 51964) (frame '2'; 387 bp, 129 residues) 1 LLWVLRDLIV YVLQWVFKGD GLGAEIIGTF VLVYTVFSAT DAKRNARDSH VPILAPLPIG 61 FAVFLVHLAT IPITGTGINP ARSLGAAIIY NDEHAWNDHW IFWVGPMIGA ALAAIYHQII 121 IRAMPFHRS- AGS-3 (49201 49416,50285 50292,51719 51751,51872 52177) SCR (e 0.995 d 0.993 a 0.992,e 1.000 d 0.000 a 0.000,e 1.000 d 0.997 a 0.991,e 0.980) Exon 1 49201 49416 ( 216 n); score: 0.995 Intron 1 49417 50284 ( 868 n); Pd: 0.993 Pa: 0.992 Exon 2 50285 50292 ( 8 n); score: 1.000 Intron 2 50293 51718 (1426 n); Pd: 0.000 Pa: 0.000 Exon 3 51719 51751 ( 33 n); score: 1.000 Intron 3 51752 51871 ( 120 n); Pd: 0.997 Pa: 0.991 Exon 4 51872 52177 ( 306 n); score: 0.980 PGS (49201 49416,50285 50292,51719 51751,51872 52177) SGN-E348828+ 3-phase translation of AGS-3 (+strand): . . . . . . 49201 CATTGTTTGAACCAGGGGAGTTGTCATCATGGTCCTTTTACAGGGCTGGTATTGCAGAGT H C L N Q G S C H H G P F T G L V L Q S I V - T R G V V I M V L L Q G W Y C R V L F E P G E L S S W S F Y R A G I A E . . . . . . 49261 TCATGGCAACTTTCTTGTTCTTGTATATCACAATCTTGACTGTTATGGGTCTTAAGAGAT S W Q L S C S C I S Q S - L L W V L R D H G N F L V L V Y H N L D C Y G S - E I F M A T F L F L Y I T I L T V M G L K R . . . . . . 49321 CTGATAGTTTATGTTCTTCAGTGGGTATTCAAGGGGTTGCTTGGGCTTTTGGTGGTATGA L I V Y V L Q W V F K G L L G L L V V - - - F M F F S G Y S R G C L G F W W Y D S D S L C S S V G I Q G V A W A F G G M . . . . : . : . 49381 TCTTTGCTTTGGTCTACTGTACTGCTGGTATCTCAG : GAGGACAC : ATCTACAACGACGAGC S L L W S T V L L V S Q : E D T : S T T T S L C F G L L Y C W Y L R : R T : H L Q R R A I F A L V Y C T A G I S : G G H : I Y N D E . . : . . . . 51735 ATGCATGGAATGACCAC : TGGATCTTCTGGGTTGGACCAATGATTGGAGCTGCTCTTGCTG M H G M T T : G S S G L D Q - L E L L L L C M E - P : L D L L G W T N D W S C S C C H A W N D H : W I F W V G P M I G A A L A . . . . . . 51915 CTATTTACCACCAAATAATTATCAGAGCTATGCCATTCCACAGGTCTTAAGTTATCTGTC L F T T K - L S E L C H S T G L K L S V Y L P P N N Y Q S Y A I P Q V L S Y L S A I Y H Q I I I R A M P F H R S - V I C . . . . . . 51975 TTTAAACAATGGGATTCTCAAAGACTCAACAGTGTACTTTTGTCTTCTTTTTTTGGGGGG F K Q W D S Q R L N S V L L S S F F G G L N N G I L K D S T V Y F C L L F L G G L - T M G F S K T Q Q C T F V F F F W G . . . . . . 52035 TTGAATGTTCAAGTTTCTCCTTCAATGTATTTGTAATGTGGATCTGTTCCTTCTGTTAAG L N V Q V S P S M Y L - C G S V P S V K - M F K F L L Q C I C N V D L F L L L R V E C S S F S F N V F V M W I C S F C - . . . . . . 52095 ATGTTCTATTATGTGTGTAAATTATCAGGTTATGATAATGTAATGTACCTTATCAATGAA M F Y Y V C K L S G Y D N V M Y L I N E C S I M C V N Y Q V M I M - C T L S M K D V L L C V - I I R L - - C N V P Y Q - . . . 52155 GGTTCTTTATTTTTATCTTTGAA G S L F L S L V L Y F Y L - R F F I F I F E Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-10_AGS-3_PPS_1 (49203 49416,50285 50292,51719 51751,51872 51964) (frame '0'; 345 bp, 115 residues) 1 LFEPGELSSW SFYRAGIAEF MATFLFLYIT ILTVMGLKRS DSLCSSVGIQ GVAWAFGGMI 61 FALVYCTAGI SGGHIYNDEH AWNDHWIFWV GPMIGAALAA IYHQIIIRAM PFHRS- AGS-4 (50436 50580,51611 51751,51872 52145,52248 52280) SCR (e 0.986 d 1.000 a 0.980,e 0.993 d 0.997 a 0.991,e 0.989 d 0.000 a 0.622,e 0.667) Exon 1 50436 50580 ( 145 n); score: 0.986 Intron 1 50581 51610 (1030 n); Pd: 1.000 Pa: 0.980 Exon 2 51611 51751 ( 141 n); score: 0.993 Intron 2 51752 51871 ( 120 n); Pd: 0.997 Pa: 0.991 Exon 3 51872 52145 ( 274 n); score: 0.989 Intron 3 52146 52247 ( 102 n); Pd: 0.000 Pa: 0.622 Exon 4 52248 52280 ( 33 n); score: 0.667 PGS (50436 50580,51611 51751,51872 52145,52248 52280) SGN-E309074- 3-phase translation of AGS-4 (+strand): . . . . . . 50436 ACTTGGTGGTGGTGCTAATGTTGTTAACCCTGGATACACCAAGGGTGATGGCCTTGGTGC T W W W C - C C - P W I H Q G - W P W C L G G G A N V V N P G Y T K G D G L G A L V V V L M L L T L D T P R V M A L V . . . . . . 50496 TGAAATTATTGGCACCTTTGTCCTTGTTTACACTGTTTTTTCAGCCACTGATGCCAAGAG - N Y W H L C P C L H C F F S H - C Q E E I I G T F V L V Y T V F S A T D A K R L K L L A P L S L F T L F F Q P L M P R . . . : . . . 50556 AAATGCCAGAGACTCACATGTTCCT : ATTTTGGCACCACTTCCTATTGGATTCGCAGTGTT K C Q R L T C S : Y F G T T S Y W I R S V N A R D S H V P : I L A P L P I G F A V F E M P E T H M F L : F W H H F L L D S Q C . . . . . . 51646 CTTGGTTCATTTGGCCACCATCCCCATCACCGGAACTGGCATCAACCCCGCCAGGAGTCT L G S F G H H P H H R N W H Q P R Q E S L V H L A T I P I T G T G I N P A R S L S W F I W P P S P S P E L A S T P P G V . . . . . : . 51706 TGGAGCTGCTATCATCTACAACGACGAGCATGCATGGAATGACCAC : TGGATCTTCTGGGT W S C Y H L Q R R A C M E - P : L D L L G G A A I I Y N D E H A W N D H : W I F W V L E L L S S T T T S M H G M T T : G S S G . . . . . . 51886 TGGACCAATGATTGGAGCTGCTCTTGCTGCTATTTACCACCAAATAATTATCAGAGCTAT W T N D W S C S C C Y L P P N N Y Q S Y G P M I G A A L A A I Y H Q I I I R A M L D Q - L E L L L L L F T T K - L S E L . . . . . . 51946 GCCATTCCACAGGTCTTAAGTTATCTGTCTTTAAACAATGGGATTCTCAAAGACTCAACA A I P Q V L S Y L S L N N G I L K D S T P F H R S - V I C L - T M G F S K T Q Q C H S T G L K L S V F K Q W D S Q R L N . . . . . . 52006 GTGTACTTTTGTCTTCTTTTTTTGGGGGGTTGAATGTTCAAGTTTCTCCTTCAATGTATT V Y F C L L F L G G - M F K F L L Q C I C T F V F F F W G V E C S S F S F N V F S V L L S S F F G G L N V Q V S P S M Y . . . . . . 52066 TGTAATGTGGATCTGTTCCTTCTGTTAAGATGTTCTATTATGTGTGTAAATTATCAGGTT C N V D L F L L L R C S I M C V N Y Q V V M W I C S F C - D V L L C V - I I R L L - C G S V P S V K M F Y Y V C K L S G . . : . . . . 52126 ATGATAATGTAATGTACCTT : AGACGGACTAGAAAGAAAAAAAAGACAAACAAA M I M - C T L : D G L E R K K R Q T - - C N V P : - T D - K E K K D K Q Y D N V M Y L : R R T R K K K K T N K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-10_AGS-4_PPS_1 (50437 50580,51611 51751,51872 51964) (frame '2'; 375 bp, 125 residues) 1 LGGGANVVNP GYTKGDGLGA EIIGTFVLVY TVFSATDAKR NARDSHVPIL APLPIGFAVF 61 LVHLATIPIT GTGINPARSL GAAIIYNDEH AWNDHWIFWV GPMIGAALAA IYHQIIIRAM 121 PFHRS- AGS-5 (51611 51751,51872 52162,52248 52279) SCR (e 1.000 d 0.997 a 0.991,e 0.997 d 0.000 a 0.622,e 0.656) Exon 1 51611 51751 ( 141 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 Pa: 0.991 Exon 2 51872 52162 ( 291 n); score: 0.997 Intron 2 52163 52247 ( 85 n); Pd: 0.000 Pa: 0.622 Exon 3 52248 52279 ( 32 n); score: 0.656 PGS (51611 51751,51872 52162,52248 52279) SGN-E225153- 3-phase translation of AGS-5 (+strand): . . . . . . 51611 ATTTTGGCACCACTTCCTATTGGATTCGCAGTGTTCTTGGTTCATTTGGCCACCATCCCC I L A P L P I G F A V F L V H L A T I P F W H H F L L D S Q C S W F I W P P S P F G T T S Y W I R S V L G S F G H H P . . . . . . 51671 ATCACCGGAACTGGCATCAACCCCGCCAGGAGTCTTGGAGCTGCTATCATCTACAACGAC I T G T G I N P A R S L G A A I I Y N D S P E L A S T P P G V L E L L S S T T T H H R N W H Q P R Q E S W S C Y H L Q R . . . : . . . 51731 GAGCATGCATGGAATGACCAC : TGGATCTTCTGGGTTGGACCAATGATTGGAGCTGCTCTT E H A W N D H : W I F W V G P M I G A A L S M H G M T T : G S S G L D Q - L E L L L R A C M E - P : L D L L G W T N D W S C S . . . . . . 51911 GCTGCTATTTACCACCAAATAATTATCAGAGCTATGCCATTCCACAGGTCTTAAGTTATC A A I Y H Q I I I R A M P F H R S - V I L L F T T K - L S E L C H S T G L K L S C C Y L P P N N Y Q S Y A I P Q V L S Y . . . . . . 51971 TGTCTTTAAACAATGGGATTCTCAAAGACTCAACAGTGTACTTTTGTCTTCTTTTTTTGG C L - T M G F S K T Q Q C T F V F F F W V F K Q W D S Q R L N S V L L S S F F G L S L N N G I L K D S T V Y F C L L F L . . . . . . 52031 GGGGTTGAATGTTCAAGTTTCTCCTTCAATGTATTTGTAATGTGGATCTGTTCCTTCTGT G V E C S S F S F N V F V M W I C S F C G L N V Q V S P S M Y L - C G S V P S V G G - M F K F L L Q C I C N V D L F L L . . . . . . 52091 TAAGATGTTCTATTATGTGTGTAAATTATCAGGTTATGATAATGTAATGTACCTTATCAA - D V L L C V - I I R L - - C N V P Y Q K M F Y Y V C K L S G Y D N V M Y L I N L R C S I M C V N Y Q V M I M - C T L S . . : . . . 52151 TGAAGGTTCTTT : AGACGGACTAGAAAGAAAAAAAAGACAAACAA - R F F : R R T R K K K K T N E G S L : D G L E R K K R Q T M K V L : - T D - K E K K D K Q Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-10_AGS-5_PPS_1 (51611 51751,51872 51964) (frame '1'; 231 bp, 77 residues) 1 ILAPLPIGFA VFLVHLATIP ITGTGINPAR SLGAAIIYND EHAWNDHWIF WVGPMIGAAL 61 AAIYHQIIIR AMPFHRS- AGS-6 (51611 51751,51872 52114,52248 52270) SCR (e 0.993 d 0.997 a 0.991,e 0.996 d 0.000 a 0.622,e 0.652) Exon 1 51611 51751 ( 141 n); score: 0.993 Intron 1 51752 51871 ( 120 n); Pd: 0.997 Pa: 0.991 Exon 2 51872 52114 ( 243 n); score: 0.996 Intron 2 52115 52247 ( 133 n); Pd: 0.000 Pa: 0.622 Exon 3 52248 52270 ( 23 n); score: 0.652 PGS (51611 51751,51872 52114,52248 52270) SGN-E220946- 3-phase translation of AGS-6 (+strand): . . . . . . 51611 ATTTTGGCACCACTTCCTATTGGATTCGCAGTGTTCTTGGTTCATTTGGCCACCATCCCC I L A P L P I G F A V F L V H L A T I P F W H H F L L D S Q C S W F I W P P S P F G T T S Y W I R S V L G S F G H H P . . . . . . 51671 ATCACCGGAACTGGCATCAACCCCGCCAGGAGTCTTGGAGCTGCTATCATCTACAACGAC I T G T G I N P A R S L G A A I I Y N D S P E L A S T P P G V L E L L S S T T T H H R N W H Q P R Q E S W S C Y H L Q R . . . : . . . 51731 GAGCATGCATGGAATGACCAC : TGGATCTTCTGGGTTGGACCAATGATTGGAGCTGCTCTT E H A W N D H : W I F W V G P M I G A A L S M H G M T T : G S S G L D Q - L E L L L R A C M E - P : L D L L G W T N D W S C S . . . . . . 51911 GCTGCTATTTACCACCAAATAATTATCAGAGCTATGCCATTCCACAGGTCTTAAGTTATC A A I Y H Q I I I R A M P F H R S - V I L L F T T K - L S E L C H S T G L K L S C C Y L P P N N Y Q S Y A I P Q V L S Y . . . . . . 51971 TGTCTTTAAACAATGGGATTCTCAAAGACTCAACAGTGTACTTTTGTCTTCTTTTTTTGG C L - T M G F S K T Q Q C T F V F F F W V F K Q W D S Q R L N S V L L S S F F G L S L N N G I L K D S T V Y F C L L F L . . . . . . 52031 GGGGTTGAATGTTCAAGTTTCTCCTTCAATGTATTTGTAATGTGGATCTGTTCCTTCTGT G V E C S S F S F N V F V M W I C S F C G L N V Q V S P S M Y L - C G S V P S V G G - M F K F L L Q C I C N V D L F L L . . . : . . 52091 TAAGATGTTCTATTATGTGTGTAA : AGACGGACTAGAAAGAAAAAAAA - D V L L C V - : R R T R K K K K M F Y Y V C K : D G L E R K K L R C S I M C V : K T D - K E K K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-10_AGS-6_PPS_1 (51611 51751,51872 51964) (frame '1'; 231 bp, 77 residues) 1 ILAPLPIGFA VFLVHLATIP ITGTGINPAR SLGAAIIYND EHAWNDHWIF WVGPMIGAAL 61 AAIYHQIIIR AMPFHRS- AGS-7 (51621 51751,51872 52168,52248 52270) SCR (e 1.000 d 0.997 a 0.991,e 0.990 d 0.000 a 0.622,e 0.696) Exon 1 51621 51751 ( 131 n); score: 1.000 Intron 1 51752 51871 ( 120 n); Pd: 0.997 Pa: 0.991 Exon 2 51872 52168 ( 297 n); score: 0.990 Intron 2 52169 52247 ( 79 n); Pd: 0.000 Pa: 0.622 Exon 3 52248 52270 ( 23 n); score: 0.696 PGS (51621 51751,51872 52168,52248 52270) SGN-E231555+ 3-phase translation of AGS-7 (+strand): . . . . . . 51621 CACTTCCTATTGGATTCGCAGTGTTCTTGGTTCATTTGGCCACCATCCCCATCACCGGAA H F L L D S Q C S W F I W P P S P S P E T S Y W I R S V L G S F G H H P H H R N L P I G F A V F L V H L A T I P I T G . . . . . . 51681 CTGGCATCAACCCCGCCAGGAGTCTTGGAGCTGCTATCATCTACAACGACGAGCATGCAT L A S T P P G V L E L L S S T T T S M H W H Q P R Q E S W S C Y H L Q R R A C M T G I N P A R S L G A A I I Y N D E H A . . : . . . . 51741 GGAATGACCAC : TGGATCTTCTGGGTTGGACCAATGATTGGAGCTGCTCTTGCTGCTATTT G M T T : G S S G L D Q - L E L L L L L F E - P : L D L L G W T N D W S C S C C Y L W N D H : W I F W V G P M I G A A L A A I . . . . . . 51921 ACCACCAAATAATTATCAGAGCTATGCCATTCCACAGGTCTTAAGTTATCTGTCTTTAAA T T K - L S E L C H S T G L K L S V F K P P N N Y Q S Y A I P Q V L S Y L S L N Y H Q I I I R A M P F H R S - V I C L - . . . . . . 51981 CAATGGGATTCTCAAAGACTCAACAGTGTACTTTTGTCTTCTTTTTTTGGGGGGTTGAAT Q W D S Q R L N S V L L S S F F G G L N N G I L K D S T V Y F C L L F L G G - M T M G F S K T Q Q C T F V F F F W G V E . . . . . . 52041 GTTCAAGTTTCTCCTTCAATGTATTTGTAATGTGGATCTGTTCCTTCTGTTAAGATGTTC V Q V S P S M Y L - C G S V P S V K M F F K F L L Q C I C N V D L F L L L R C S C S S F S F N V F V M W I C S F C - D V . . . . . . 52101 TATTATGTGTGTAAATTATCAGGTTATGATAATGTAATGTACCTTATCAATGAAGGTTCT Y Y V C K L S G Y D N V M Y L I N E G S I M C V N Y Q V M I M - C T L S M K V L L L C V - I I R L - - C N V P Y Q - R F . : . . . 52161 TTATTTTT : AGACGGACTAGAAAGAAAAAAAA L F L : D G L E R K K Y F : - T D - K E K K F I F : R R T R K K K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-10_AGS-7_PPS_1 (51623 51751,51872 51964) (frame '0'; 219 bp, 73 residues) 1 LPIGFAVFLV HLATIPITGT GINPARSLGA AIIYNDEHAW NDHWIFWVGP MIGAALAAIY 61 HQIIIRAMPF HRS- PGL 11 (- strand): 52286 51881 AGS-1 (52286 52278,52177 51881) SCR (e 0.778 d 0.814 a 0.000,e 1.000) Exon 1 52286 52278 ( 9 n); score: 0.778 Intron 1 52277 52178 ( 100 n); Pd: 0.814 Pa: 0.000 Exon 2 52177 51881 ( 297 n); score: 1.000 PGS (52177 51881) SGN-E577844+ PGS (52169 51890) SGN-E222655+ PGS (52175 51897) SGN-E218835+ PGS (52285 52278,52177 51898) SGN-E308441- PGS (52286 52278,52177 51906) SGN-E218166+ PGS (52165 51926) SGN-E266732+ PGS (52142 51952) SGN-E224037+ PGS (52286 52278,52177 51957) SGN-E217946+ PGS (52177 52002) SGN-E303694- PGS (52170 52014) SGN-E218929+ 3-phase translation of AGS-1 (-strand): . : . . . . . 52286 TTTTAATTT : TTCAAAGATAAAAATAAAGAACCTTCATTGATAAGGTACATTACATTATCA F - F : F K D K N K E P S L I R Y I T L S F N F : S K I K I K N L H - - G T L H Y H L I : F Q R - K - R T F I D K V H Y I I . . . . . . 52126 TAACCTGATAATTTACACACATAATAGAACATCTTAACAGAAGGAACAGATCCACATTAC - P D N L H T - - N I L T E G T D P H Y N L I I Y T H N R T S - Q K E Q I H I T I T - - F T H I I E H L N R R N R S T L . . . . . . 52066 AAATACATTGAAGGAGAAACTTGAACATTCAACCCCCCAAAAAAAGAAGACAAAAGTACA K Y I E G E T - T F N P P K K E D K S T N T L K E K L E H S T P Q K K K T K V H Q I H - R R N L N I Q P P K K R R Q K Y . . . . . . 52006 CTGTTGAGTCTTTGAGAATCCCATTGTTTAAAGACAGATAACTTAAGACCTGTGGAATGG L L S L - E S H C L K T D N L R P V E W C - V F E N P I V - R Q I T - D L W N G T V E S L R I P L F K D R - L K T C G M . . . . . . 51946 CATAGCTCTGATAATTATTTGGTGGTAAATAGCAGCAAGAGCAGCTCCAATCATTGGTCC H S S D N Y L V V N S S K S S S N H W S I A L I I I W W - I A A R A A P I I G P A - L - - L F G G K - Q Q E Q L Q S L V . 51886 AACCCA N P T Q P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (+ strand): 53153 55277 AGS-1 (53153 53300,53721 53952,54127 54206,54909 55062,55209 55277) SCR (e 1.000 d 1.000 a 0.989,e 1.000 d 0.960 a 0.999,e 1.000 d 0.000 a 0.959,e 0.987 d 0.941 a 0.981,e 1.000) Exon 1 53153 53300 ( 148 n); score: 1.000 Intron 1 53301 53720 ( 420 n); Pd: 1.000 Pa: 0.989 Exon 2 53721 53952 ( 232 n); score: 1.000 Intron 2 53953 54126 ( 174 n); Pd: 0.960 Pa: 0.999 Exon 3 54127 54206 ( 80 n); score: 1.000 Intron 3 54207 54908 ( 702 n); Pd: 0.000 Pa: 0.959 Exon 4 54909 55062 ( 154 n); score: 0.987 Intron 4 55063 55208 ( 146 n); Pd: 0.941 Pa: 0.981 Exon 5 55209 55277 ( 69 n); score: 1.000 PGS (53153 53300,53721 53952,54127 54206,54909 55062,55209 55277) SGN-E328039+ PGS (53153 53300,53721 53952,54127 54206,54909 55062,55209 55274) SGN-E326678+ 3-phase translation of AGS-1 (+strand): . . . . . . 53153 AAAAAACTATCACACTGTTGTTTTTTGATCTACAAATTAATTATGTGGTTATTTGGATTA K K L S H C C F L I Y K L I M W L F G L K N Y H T V V F - S T N - L C G Y L D - K T I T L L F F D L Q I N Y V V I W I . . . . . . 53213 AAAGGTGCCTCTGGTTTCTCTGCTTCATCTACAGCTGAAGAAGTTACTCAAGGAATTGAT K G A S G F S A S S T A E E V T Q G I D K V P L V S L L H L Q L K K L L K E L M K R C L W F L C F I Y S - R S Y S R N - . . . : . . . 53273 GCTAATGGACTCACTGCCATTGTTACAG : GAGCATCTAGTGGTATTGGTGCAGAAACAACG A N G L T A I V T : G A S S G I G A E T T L M D S L P L L Q : E H L V V L V Q K Q R C - W T H C H C Y R : S I - W Y W C R N N . . . . . . 53753 CGTGTTCTTGCAATGCGAGGTGCGCATGTAGTAATGGCAGTTCGTAATGTTAAAAGTGGC R V L A M R G A H V V M A V R N V K S G V F L Q C E V R M - - W Q F V M L K V A A C S C N A R C A C S N G S S - C - K W . . . . . . 53813 GAAGAAGTTAAGGATAGTATTCTTAAAGAGATTCCTCATGCCAAAATTGATGTAATGGAG E E V K D S I L K E I P H A K I D V M E K K L R I V F L K R F L M P K L M - W R R R S - G - Y S - R D S S C Q N - C N G . . . . . . 53873 ATGGATCTCGGTTCTATGGAATCCGTTAGGAAGTTTGCATCGGAATATAACTCTACTGGT M D L G S M E S V R K F A S E Y N S T G W I S V L W N P L G S L H R N I T L L V D G S R F Y G I R - E V C I G I - L Y W . . : . . . . 53933 TATCCTCTGAACATTCTAAT : CAACAATGCAGGGGTTATGGCTCCACCGTTCATGCTTTCT Y P L N I L I : N N A G V M A P P F M L S I L - T F - : S T M Q G L W L H R S C F L L S S E H S N : Q Q C R G Y G S T V H A F . . . . : . . 54167 CAAGACAATATTGAATTACAGTTTGCTACTAATCATTTAG : GTCATTTTCTTTTGACAAAT Q D N I E L Q F A T N H L : G H F L L T N K T I L N Y S L L L I I - : V I F F - Q I S R Q Y - I T V C Y - S F R : S F S F D K . . . . . . 54929 CTTTTGCTACAGAACCTGAAAAATACAGCTCAAGCGAGCCATAAAGAAGGAAGGATTGTT L L L Q N L K N T A Q A S H K E G R I V F C Y R T - K I Q L K R A I K K E G L L S F A T E P E K Y S S S E P - R R K D C . . . . . . 54989 AACGTTTCATCATTGGGACATCGATTTACATATCGTGAAGGGATCCGTTTTGACAAAATC N V S S L G H R F T Y R E G I R F D K I T F H H W D I D L H I V K G S V L T K S - R F I I G T S I Y I S - R D P F - Q N . . : . . . . 55049 AATGACAAAGATAG : TTACACTGCAATACTTGCTTATGGACAGTCAAAGCTTGCTAATATC N D K D S : Y T A I L A Y G Q S K L A N I M T K I : V T L Q Y L L M D S Q S L L I S Q - Q R - : L H C N T C L W T V K A C - Y . . . 55255 TTACACGCTAACGAACTTGCAAG L H A N E L A Y T L T N L Q L T R - R T C K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-12_AGS-1_PPS_1 (53153 53300,53721 53952,54127 54206,54909 55062,55209 55275) (frame '1'; 681 bp, 227 residues) 1 KKLSHCCFLI YKLIMWLFGL KGASGFSASS TAEEVTQGID ANGLTAIVTG ASSGIGAETT 61 RVLAMRGAHV VMAVRNVKSG EEVKDSILKE IPHAKIDVME MDLGSMESVR KFASEYNSTG 121 YPLNILINNA GVMAPPFMLS QDNIELQFAT NHLGHFLLTN LLLQNLKNTA QASHKEGRIV 181 NVSSLGHRFT YREGIRFDKI NDKDSYTAIL AYGQSKLANI LHANELA PGL 13 (+ strand): 55589 56511 AGS-1 (55589 55661,56046 56092,56166 56511) SCR (e 1.000 d 0.996 a 0.994,e 1.000 d 0.991 a 0.996,e 1.000) Exon 1 55589 55661 ( 73 n); score: 1.000 Intron 1 55662 56045 ( 384 n); Pd: 0.996 Pa: 0.994 Exon 2 56046 56092 ( 47 n); score: 1.000 Intron 2 56093 56165 ( 73 n); Pd: 0.991 Pa: 0.996 Exon 3 56166 56511 ( 346 n); score: 1.000 PGS (55589 55661,56046 56092,56166 56511) SGN-E232072+ PGS (55589 55661,56046 56092,56166 56511) SGN-E377937+ 3-phase translation of AGS-1 (+strand): . . . . . . 55589 GAGATAACTGCTAATTCACTTCACCCGGGATCAATTACTACCAATCTTCTCCGTCACCAA E I T A N S L H P G S I T T N L L R H Q R - L L I H F T R D Q L L P I F S V T K D N C - F T S P G I N Y Y Q S S P S P . . : . . . . : 55649 AGTTTGGTTGAAG : GCTTAGTTAACTGGATTGGCAAATACTTCATTAAAAACATTCCACAG : S L V E : G L V N W I G K Y F I K N I P Q : V W L K : A - L T G L A N T S L K T F H R : K F G - R : L S - L D W Q I L H - K H S T : . . . . . . 56166 GGAGCAGCAACTACATGCTATGTAGCTTTGCATCCTCAGGTGAAGGGAATAACCGGTGAA G A A T T C Y V A L H P Q V K G I T G E E Q Q L H A M - L C I L R - R E - P V N G S S N Y M L C S F A S S G E G N N R - . . . . . . 56226 TACTTCTCGGACAGCAATATATCTGCATCAACTTCTCAGGGTACAGATGCAGAATTGGCA Y F S D S N I S A S T S Q G T D A E L A T S R T A I Y L H Q L L R V Q M Q N W Q I L L G Q Q Y I C I N F S G Y R C R I G . . . . . . 56286 AAGAAACTCTGGGATTTCAGCTTGAATTTGACAAAACCTCAGTAAAAACAATGTCAATTG K K L W D F S L N L T K P Q - K Q C Q L R N S G I S A - I - Q N L S K N N V N - K E T L G F Q L E F D K T S V K T M S I . . . . . . 56346 ATGTTTTATCTCAGTATGTGATCATCGCGTAAACTCTTTTTTCTTTCCAAATACTTTCCT M F Y L S M - S S R K L F F L S K Y F P C F I S V C D H R V N S F F F P N T F L D V L S Q Y V I I A - T L F S F Q I L S . . . . . . 56406 TGTAATGCACATCTCGACTGGTTTTTGGCTGGACAAATCTTGCTGGCTTGAAAACTTGAA C N A H L D W F L A G Q I L L A - K L E V M H I S T G F W L D K S C W L E N L N L - C T S R L V F G W T N L A G L K T - . . . . . 56466 TTTCAATGATAATGGTGACATGTATTGTTGGTAATAAGCCTCATCA F Q - - W - H V L L V I S L I F N D N G D M Y C W - - A S S I S M I M V T C I V G N K P H Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-13_AGS-1_PPS_1 (55589 55661,56046 56092,56166 56330) (frame '1'; 282 bp, 94 residues) 1 EITANSLHPG SITTNLLRHQ SLVEGLVNWI GKYFIKNIPQ GAATTCYVAL HPQVKGITGE 61 YFSDSNISAS TSQGTDAELA KKLWDFSLNL TKPQ- PGL 14 (- strand): 60019 58574 AGS-1 (60019 59911,59825 59643,58753 58574) SCR (e 0.963 d 0.946 a 1.000,e 0.940 d 0.259 a 0.999,e 0.939) Exon 1 60019 59911 ( 109 n); score: 0.963 Intron 1 59910 59826 ( 85 n); Pd: 0.946 Pa: 1.000 Exon 2 59825 59643 ( 183 n); score: 0.940 Intron 2 59642 58754 ( 889 n); Pd: 0.259 Pa: 0.999 Exon 3 58753 58574 ( 180 n); score: 0.939 PGS (60019 59911,59825 59643,58753 58574) SGN-E542913- 3-phase translation of AGS-1 (-strand): . . . . . . 60019 GGTTATTAAAAATTCAAATGGTTGCAATCTTGCGGTAGATATATGGAGCCTTGGATGCAC G Y - K F K W L Q S C G R Y M E P W M H V I K N S N G C N L A V D I W S L G C T L L K I Q M V A I L R - I Y G A L D A . . . . . : . 59959 GGTTTTGGAGATGGCAACAACAAAACCACCTTGGAGTCAGTATGAAGGG : GTCGCTGCTAT G F G D G N N K T T L E S V - R : G R C Y V L E M A T T K P P W S Q Y E G : V A A I R F W R W Q Q Q N H L G V S M K G : S L L . . . . . . 59814 TTTTAAGATTGGAAACAGCAAGGAAGTTCCAGCAATTCCCTATCACCTGTCAGATAAGGG F - D W K Q Q G S S S N S L S P V R - G F K I G N S K E V P A I P Y H L S D K G F L R L E T A R K F Q Q F P I T C Q I R . . . . . . 59754 CAAGGATTTTGTGCGGCAATGTCTACAACGCAATCCACTCCACCGTCCAACAGCTTCTCA Q G F C A A M S T T Q S T P P S N S F S K D F V R Q C L Q R N P L H R P T A S Q A R I L C G N V Y N A I H S T V Q Q L L . . . . . . : 59694 GCTCTTGAAACATCCCTTTGTCAAAAGTACTGCTCCAATGGAAAGATTCATT : GGCATTGG A L E T S L C Q K Y C S N G K I H : W H W L L K H P F V K S T A P M E R F I : G I G S S - N I P L S K V L L Q W K D S L : A L . . . . . . 58745 ACATTTAAAAGATCCACCATGTGTGGGCTCAGAAGAAGTTGCAGTGCATCATGAGCCTAG T F K R S T M C G L R R S C S A S - A - H L K D P P C V G S E E V A V H H E P R D I - K I H H V W A Q K K L Q C I M S L . . . . . . 58685 AAGTTCAATTTTTTTTCCTGGATTTAGGTTAGTTCATTTCTCTCTCACACAATAGTTACC K F N F F S W I - V S S F L S H T I V T S S I F F P G F R L V H F S L T Q - L P E V Q F F F L D L G - F I S L S H N S Y . . . . . . 58625 TGTAATCTGATCTTGGTCCATCTTGCTATTATTGAAGAAGCCAGATTTTTGC C N L I L V H L A I I E E A R F L V I - S W S I L L L L K K P D F C L - S D L G P S C Y Y - R S Q I F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-14_AGS-1_PPS_1 (60018 59911,59825 59643,58753 58631) (frame '2'; 411 bp, 137 residues) 1 VIKNSNGCNL AVDIWSLGCT VLEMATTKPP WSQYEGVAAI FKIGNSKEVP AIPYHLSDKG 61 KDFVRQCLQR NPLHRPTASQ LLKHPFVKST APMERFIGIG HLKDPPCVGS EEVAVHHEPR 121 SSIFFPGFRL VHFSLTQ- PGL 15 (- strand): 63177 62395 AGS-1 (63177 62953,62794 62395) SCR (e 0.996 d 0.999 a 0.979,e 0.997) Exon 1 63177 62953 ( 225 n); score: 0.996 Intron 1 62952 62795 ( 158 n); Pd: 0.999 Pa: 0.979 Exon 2 62794 62395 ( 400 n); score: 0.997 PGS (63177 62953,62794 62395) SGN-E542914+ PGS (63176 62953,62794 62417) SGN-E302911+ 3-phase translation of AGS-1 (-strand): . . . . . . 63177 AGTGACCGGTGAAGTCTCCGAGCCATCATTGACTTTGCCTCTTCCCATGCCCAGGCATCT S D R - S L R A I I D F A S S H A Q A S V T G E V S E P S L T L P L P M P R H L - P V K S P S H H - L C L F P C P G I . . . . . . 63117 TCCACATGGACCAACTGCTGCAGGAGTTGACAGGGACTTACCAACTGCTTCTGTTTCTTG S T W T N C C R S - Q G L T N C F C F L P H G P T A A G V D R D L P T A S V S C F H M D Q L L Q E L T G T Y Q L L L F L . . . . . . 63057 TGACAGCTCCAGTGACAGTGATGATCTTACTGACTCACGATTTCTAAGTCCCCAAACATC - Q L Q - Q - - S Y - L T I S K S P N I D S S S D S D D L T D S R F L S P Q T S V T A P V T V M I L L T H D F - V P K H . . . . . : . 62997 TGATTATGAAAACGGGAGCAGAACTGCCTTGAATAGTCCTTCCAG : TTTGAAGCAGAAGGT - L - K R E Q N C L E - S F Q : F E A E G D Y E N G S R T A L N S P S S : L K Q K V L I M K T G A E L P - I V L P : V - S R R . . . . . . 62779 TCAGTCCCCTATTGCATCCAATGCAAGCTCAGGAGAGATGCTGAAGTCAGCTACTCTTTT S V P Y C I Q C K L R R D A E V S Y S F Q S P I A S N A S S G E M L K S A T L L F S P L L H P M Q A Q E R C - S Q L L F . . . . . . 62719 GTCAGACAATCAGGCGATCCCTACATCTCCTAGACAGAGGCTTTTAAGATCTCATGTACC V R Q S G D P Y I S - T E A F K I S C T S D N Q A I P T S P R Q R L L R S H V P C Q T I R R S L H L L D R G F - D L M Y . . . . . . 62659 ACCAGGCTTACAGATTCCTCATCATGGCGCTTCCTACAGTGCTCCTGACAGCTCGATGTC T R L T D S S S W R F L Q C S - Q L D V P G L Q I P H H G A S Y S A P D S S M S H Q A Y R F L I M A L P T V L L T A R C . . . . . . 62599 AAGTCCTTCAAGAAGTCCCATGAGGGTATTTGGGCATGAAACGGTCATGAACCCTGGTTT K S F K K S H E G I W A - N G H E P W F S P S R S P M R V F G H E T V M N P G F Q V L Q E V P - G Y L G M K R S - T L V . . . . . . 62539 CTGGCTAGGGAAGCCACATGGAGAGATAACCTTCTTAGGATCAGGGCACTGCTCCAGTCC L A R E A T W R D N L L R I R A L L Q S W L G K P H G E I T F L G S G H C S S P S G - G S H M E R - P S - D Q G T A P V . . . . . . 62479 AGGTTCTGGCCAAAACTCTGGGCACAATTCAATTGGAGGTGATATGTTAGCGCAGCCCTT R F W P K L W A Q F N W R - Y V S A A L G S G Q N S G H N S I G G D M L A Q P F Q V L A K T L G T I Q L E V I C - R S P . . . 62419 TTGGCCACACAGCAGGTGTAGTCCT L A T Q Q V - S W P H S R C S P F G H T A G V V Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-15_AGS-1_PPS_1 (63176 62953,62794 62395) (frame '2'; 624 bp, 208 residues) 1 VTGEVSEPSL TLPLPMPRHL PHGPTAAGVD RDLPTASVSC DSSSDSDDLT DSRFLSPQTS 61 DYENGSRTAL NSPSSLKQKV QSPIASNASS GEMLKSATLL SDNQAIPTSP RQRLLRSHVP 121 PGLQIPHHGA SYSAPDSSMS SPSRSPMRVF GHETVMNPGF WLGKPHGEIT FLGSGHCSSP 181 GSGQNSGHNS IGGDMLAQPF WPHSRCSP PGL 16 (- strand): 67582 67122 AGS-1 (67582 67122) SCR (e 1.000) Exon 1 67582 67122 ( 461 n); score: 1.000 PGS (67582 67122) SGN-E225784- 3-phase translation of AGS-1 (-strand): . . . . . . 67582 CATATTTGCAAATGAAATCAATAGCAGCAGCAGTGTTGCTCCGCCACCGCCTCGCGGTGG H I C K - N Q - Q Q Q C C S A T A S R W I F A N E I N S S S S V A P P P P R G G Y L Q M K S I A A A V L L R H R L A V . . . . . . 67522 CGCCGGGCCACAAGGTGGAGCAAAAAATGTCATTGACATTGTTCATGAAATATGGTCTAG R R A T R W S K K C H - H C S - N M V - A G P Q G G A K N V I D I V H E I W S S A P G H K V E Q K M S L T L F M K Y G L . . . . . . 67462 TTATGAATGTTAACCCTAGAGACTTGACTCCAATTTTGGCCAAAATTGAGAATTTTTGCA L - M L T L E T - L Q F W P K L R I F A Y E C - P - R L D S N F G Q N - E F L Q V M N V N P R D L T P I L A K I E N F C . . . . . . 67402 AAATTGACCATTCTTGTGGTGGAGAACATATGATTAATAATGGTATTAATCAACCAGGAG K L T I L V V E N I - L I M V L I N Q E N - P F L W W R T Y D - - W Y - S T R S K I D H S C G G E H M I N N G I N Q P G . . . . . . 67342 CCACTGCAGTAAATGGAATTGCAGCTTGAAGATTTATAAATCTTGCAAGTGAAAATCATA P L Q - M E L Q L E D L - I L Q V K I I H C S K W N C S L K I Y K S C K - K S Y A T A V N G I A A - R F I N L A S E N H . . . . . . 67282 TAGTAAAAAATAACTATATATATATATAGTAAAAAAGGTTATTTTCATAACTACTAGATC - - K I T I Y I Y S K K G Y F H N Y - I S K K - L Y I Y I V K K V I F I T T R S I V K N N Y I Y I - - K R L F S - L L D . . . . . . 67222 ATATGAAATGTGGCTATAAGACAAATAATGTCTACCAGACTTTTATTTACACAGTAGACC I - N V A I R Q I M S T R L L F T Q - T Y E M W L - D K - C L P D F Y L H S R P H M K C G Y K T N N V Y Q T F I Y T V D . . . . . 67162 TGATATATAACTTCTTTTTTCCCAAAATTAGATTACATTTT - Y I T S F F P K L D Y I D I - L L F S Q N - I T F L I Y N F F F P K I R L H F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-16_AGS-1_PPS_1 (67580 67314) (frame '0'; 264 bp, 88 residues) 1 YLQMKSIAAA VLLRHRLAVA PGHKVEQKMS LTLFMKYGLV MNVNPRDLTP ILAKIENFCK 61 IDHSCGGEHM INNGINQPGA TAVNGIAA- 3-phase translation of AGS-1 (+strand): . . . . . . 67122 AAAATGTAATCTAATTTTGGGAAAAAAGAAGTTATATATCAGGTCTACTGTGTAAATAAA K M - S N F G K K E V I Y Q V Y C V N K K C N L I L G K K K L Y I R S T V - I K N V I - F W E K R S Y I S G L L C K - . . . . . . 67182 AGTCTGGTAGACATTATTTGTCTTATAGCCACATTTCATATGATCTAGTAGTTATGAAAA S L V D I I C L I A T F H M I - - L - K V W - T L F V L - P H F I - S S S Y E N K S G R H Y L S Y S H I S Y D L V V M K . . . . . . 67242 TAACCTTTTTTACTATATATATATATAGTTATTTTTTACTATATGATTTTCACTTGCAAG - P F L L Y I Y I V I F Y Y M I F T C K N L F Y Y I Y I - L F F T I - F S L A R I T F F T I Y I Y S Y F L L Y D F H L Q . . . . . . 67302 ATTTATAAATCTTCAAGCTGCAATTCCATTTACTGCAGTGGCTCCTGGTTGATTAATACC I Y K S S S C N S I Y C S G S W L I N T F I N L Q A A I P F T A V A P G - L I P D L - I F K L Q F H L L Q W L L V D - Y . . . . . . 67362 ATTATTAATCATATGTTCTCCACCACAAGAATGGTCAATTTTGCAAAAATTCTCAATTTT I I N H M F S T T R M V N F A K I L N F L L I I C S P P Q E W S I L Q K F S I L H Y - S Y V L H H K N G Q F C K N S Q F . . . . . . 67422 GGCCAAAATTGGAGTCAAGTCTCTAGGGTTAACATTCATAACTAGACCATATTTCATGAA G Q N W S Q V S R V N I H N - T I F H E A K I G V K S L G L T F I T R P Y F M N W P K L E S S L - G - H S - L D H I S - . . . . . . 67482 CAATGTCAATGACATTTTTTGCTCCACCTTGTGGCCCGGCGCCACCGCGAGGCGGTGGCG Q C Q - H F L L H L V A R R H R E A V A N V N D I F C S T L W P G A T A R R W R T M S M T F F A P P C G P A P P R G G G . . . . . 67542 GAGCAACACTGCTGCTGCTATTGATTTCATTTGCAAATATG E Q H C C C Y - F H L Q I S N T A A A I D F I C K Y G A T L L L L L I S F A N M Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-16_AGS-1_PPS_1 (67354 67581) (frame '2'; 228 bp, 76 residues) 1 LIPLLIICSP PQEWSILQKF SILAKIGVKS LGLTFITRPY FMNNVNDIFC STLWPGATAR 61 RWRSNTAAAI DFICKY >C08SLe0084H03.1+_PGL-16_AGS-1_PPS_2 (67245 67466) (frame '1'; 219 bp, 73 residues) 1 PFLLYIYIVI FYYMIFTCKI YKSSSCNSIY CSGSWLINTI INHMFSTTRM VNFAKILNFG 61 QNWSQVSRVN IHN- PGL 17 (- strand): 79513 77546 AGS-1 (79513 77546) SCR (e 1.000) Exon 1 79513 77546 (1968 n); score: 1.000 PGS (78267 77546) SGN-E377632- PGS (78215 77546) SGN-E369463- PGS (77866 77546) SGN-E283959- PGS (78231 77597) SGN-E550107- PGS (78710 78019) SGN-E369464+ PGS (78710 78173) SGN-E242677+ PGS (79209 78677) SGN-E320390+ PGS (79513 78787) SGN-E550106+ PGS (79513 78815) SGN-E377633+ PGS (79509 78829) SGN-E389766+ PGS (79249 78866) SGN-E247439+ PGS (79513 78868) SGN-E233090+ PGS (79311 78882) SGN-E337323+ PGS (79513 79051) SGN-E287838+ 3-phase translation of AGS-1 (-strand): . . . . . . 79513 AAACAAAGTTTTTTACATTGAAATTTCAAGAATTCATTCCCAAAGCTTGAAAAACACCAT K Q S F L H - N F K N S F P K L E K H H N K V F Y I E I S R I H S Q S L K N T I T K F F T L K F Q E F I P K A - K T P . . . . . . 79453 TCTTGAATCACACAAAATCACAAAAGAATGAGTCTTTACATTGTATTTCAAGAATTCCCA S - I T Q N H K R M S L Y I V F Q E F P L E S H K I T K E - V F T L Y F K N S Q F L N H T K S Q K N E S L H C I S R I P . . . . . . 79393 AAGCTTTGAAATCACCATTCTTGAAAAAAGTTCCAAAGAAAAAAATATATAAAAATTGAG K L - N H H S - K K F Q R K K Y I K I E S F E I T I L E K S S K E K N I - K L S K A L K S P F L K K V P K K K I Y K N - . . . . . . 79333 TCTTTACATTGAATTTCAAGAATTTCCCAATAAAAGATGCCACCTTTTATTGGATCTCAT S L H - I S R I S Q - K M P P F I G S H L Y I E F Q E F P N K R C H L L L D L I V F T L N F K N F P I K D A T F Y W I S . . . . . . 79273 CCTCTTTCATCTGGTTTTTCAAGAAACTCCATTGATTCATCTTCAAATATTGTCACCATT P L S S G F S R N S I D S S S N I V T I L F H L V F Q E T P L I H L Q I L S P L S S F I W F F K K L H - F I F K Y C H H . . . . . . 79213 GATGTAGGTGGTCATCTTTTTCAAACAACCAAACAAACCCTAAAGCAATCAGGTTCAAAA D V G G H L F Q T T K Q T L K Q S G S K M - V V I F F K Q P N K P - S N Q V Q N - C R W S S F S N N Q T N P K A I R F K . . . . . . 79153 TCAATACTTTCTGAAATTTCAAATCTTGATGGTTCCATTCCTTTCATCGATAGAGATCCA S I L S E I S N L D G S I P F I D R D P Q Y F L K F Q I L M V P F L S S I E I Q I N T F - N F K S - W F H S F H R - R S . . . . . . 79093 GAAATGTTCTCAATCTTGCTTTCCCTTTTAAGAACTGGGAATCTCCCTTCAAAAGCCAAA E M F S I L L S L L R T G N L P S K A K K C S Q S C F P F - E L G I S L Q K P K R N V L N L A F P F K N W E S P F K S Q . . . . . . 79033 ACTTTTGATATTCAAGATTTGGTTTTTGAATCTCAGTTTTATGGTGTTGAGCATCTGTTA T F D I Q D L V F E S Q F Y G V E H L L L L I F K I W F L N L S F M V L S I C Y N F - Y S R F G F - I S V L W C - A S V . . . . . . 78973 TTGAATTCCCATTCTAACCCTTCTCAGTTTGAGCCTTTTGATCTTGAAAAATCTTTGATT L N S H S N P S Q F E P F D L E K S L I - I P I L T L L S L S L L I L K N L - F I E F P F - P F S V - A F - S - K I F D . . . . . . 78913 TTGCCTTTAAGTGGTAGGGATTCACCTACTGCTATCTCAACAACTCAATTAGGGTCAGTT L P L S G R D S P T A I S T T Q L G S V C L - V V G I H L L L S Q Q L N - G Q F F A F K W - G F T Y C Y L N N S I R V S . . . . . . 78853 CAGGTAGCTCATGGTTGTAAAATCACTTCATTTGATTGGTCATTAAAGAGAAAATCAACC Q V A H G C K I T S F D W S L K R K S T R - L M V V K S L H L I G H - R E N Q P S G S S W L - N H F I - L V I K E K I N . . . . . . 78793 ATTTTAACACAATTTGCTGGTATTGACTCTATGTTATCTGTATCACCAAATGTTGTTGCT I L T Q F A G I D S M L S V S P N V V A F - H N L L V L T L C Y L Y H Q M L L L H F N T I C W Y - L Y V I C I T K C C C . . . . . . 78733 GCTGGTGCTACTGACTTTTCAGGTTTACAAATTATTGATGTTAGTAAAGGTTTTGTTAAA A G A T D F S G L Q I I D V S K G F V K L V L L T F Q V Y K L L M L V K V L L K C W C Y - L F R F T N Y - C - - R F C - . . . . . . 78673 GAAACTTTGAATTGGGAAAATGTTACCAAGTCTGGTTCAACAGTACAAGGCATAGGTGCT E T L N W E N V T K S G S T V Q G I G A K L - I G K M L P S L V Q Q Y K A - V L R N F E L G K C Y Q V W F N S T R H R C . . . . . . 78613 TCAAAAGAGTTTTTGTTTACGAGTTTCGAATCATCTAGGAGAAACTCTAACTGCATTATG S K E F L F T S F E S S R R N S N C I M Q K S F C L R V S N H L G E T L T A L - F K R V F V Y E F R I I - E K L - L H Y . . . . . . 78553 ATATATGATTTGAGTGATAATGGTTTTAGGCCTGTTTCTGAGATAGGTCATTATGAAATC I Y D L S D N G F R P V S E I G H Y E I Y M I - V I M V L G L F L R - V I M K S D I - F E - - W F - A C F - D R S L - N . . . . . . 78493 TTTGGTGCTGAATTAGATTCCGCGATTCCAGCTACTAAACTTAGATGGATTCCTAGTTAT F G A E L D S A I P A T K L R W I P S Y L V L N - I P R F Q L L N L D G F L V I L W C - I R F R D S S Y - T - M D S - L . . . . . . 78433 AACTTGTTGATGGCTGCTGGTTCACACAGTGGACCTTCTGGTGTTAGAGGGAACATTAGG N L L M A A G S H S G P S G V R G N I R T C - W L L V H T V D L L V L E G T L G - L V D G C W F T Q W T F W C - R E H - . . . . . . 78373 TTTTGGGACTTGAGATCAGGGAACGCGGTGTGGGAGATCAAGGAAAATGTTGATTGCTTC F W D L R S G N A V W E I K E N V D C F F G T - D Q G T R C G R S R K M L I A S V L G L E I R E R G V G D Q G K C - L L . . . . . . 78313 GCTGATTGCACTGTTTCGGATGATCTTTCAGCAATTCTGAAAGTTGGCGTTCATTCAGGC A D C T V S D D L S A I L K V G V H S G L I A L F R M I F Q Q F - K L A F I Q A R - L H C F G - S F S N S E S W R S F R . . . . . . 78253 GAAGTTTTCATATCGGATTTGAGAAACATTGGTAAGGAAAATACTTGGACTTGTCTTGGT E V F I S D L R N I G K E N T W T C L G K F S Y R I - E T L V R K I L G L V L V R S F H I G F E K H W - G K Y L D L S W . . . . . . 78193 GATTCAAGAAAAGCAACAAATGGTAAGAAAGAAGGGTTTGGGAGTAAAATTGAGAGTCAT D S R K A T N G K K E G F G S K I E S H I Q E K Q Q M V R K K G L G V K L R V M - F K K S N K W - E R R V W E - N - E S . . . . . . 78133 GGGAATCAAGTTTTTTGTAGTAAAGGTGGAAATCTCGAATTATGGTCTGAGGTTTTGATT G N Q V F C S K G G N L E L W S E V L I G I K F F V V K V E I S N Y G L R F - L W E S S F L - - R W K S R I M V - G F D . . . . . . 78073 GGTTCTTCGATTAAAGATCGAGTCTTTAGGAAGAACTCAATGGGGAGAGCAAAAGATAGT G S S I K D R V F R K N S M G R A K D S V L R L K I E S L G R T Q W G E Q K I V W F F D - R S S L - E E L N G E S K R - . . . . . . 78013 TGTGGAAATAAGATAACACATTTCAGCTTTGGAGGTAACAAGATGTTTGTTACAAGGAAA C G N K I T H F S F G G N K M F V T R K V E I R - H I S A L E V T R C L L Q G K L W K - D N T F Q L W R - Q D V C Y K E . . . . . . 77953 GATCAACAATTTGTTGAAGTTTGGCAGAGTTCAGTAAGGGGATTCTAAGATTCTTCGAAA D Q Q F V E V W Q S S V R G F - D S S K I N N L L K F G R V Q - G D S K I L R K R S T I C - S L A E F S K G I L R F F E . . . . . . 77893 ATACACTACTACTTTTGAAAGATACGACACGTGTGAATTGCTCCTGGTTGTGCATAATCA I H Y Y F - K I R H V - I A P G C A - S Y T T T F E R Y D T C E L L L V V H N H N T L L L L K D T T R V N C S W L C I I . . . . . . 77833 TTTGATAATCAGAGTTATTCTTCGATAAATGTTCACAGTGAGTCACACATGTTTGAAGAG F D N Q S Y S S I N V H S E S H M F E E L I I R V I L R - M F T V S H T C L K S I - - S E L F F D K C S Q - V T H V - R . . . . . . 77773 TACAGACAAGTTTGCTCCCCAGAGTCATTCTTTGATAAACAATCGTGGTGAGTCAAGACA Y R Q V C S P E S F F D K Q S W - V K T T D K F A P Q S H S L I N N R G E S R H V Q T S L L P R V I L - - T I V V S Q D . . . . . . 77713 TGTTTGAAGAGTACGAGAAGAGTAGTCTGACTGAAGGACCATCTTATTATCAATCTATTA C L K S T R R V V - L K D H L I I N L L V - R V R E E - S D - R T I L L S I Y - M F E E Y E K S S L T E G P S Y Y Q S I . . . . . . 77653 ACTCTTGCTGCTCATTATTATAAATTCTGTATATACTTTCTTTAGTTGAACTGCACAAAT T L A A H Y Y K F C I Y F L - L N C T N L L L L I I I N S V Y T F F S - T A Q I N S C C S L L - I L Y I L S L V E L H K . . . . . 77593 TGTATGTATATAAAGAGAGTGGAATATCAAACTTCAATTTGCTACTAA C M Y I K R V E Y Q T S I C Y - V C I - R E W N I K L Q F A T L Y V Y K E S G I S N F N L L L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-17_AGS-1_PPS_1 (79300 77906) (frame '1'; 1392 bp, 464 residues) 1 KMPPFIGSHP LSSGFSRNSI DSSSNIVTID VGGHLFQTTK QTLKQSGSKS ILSEISNLDG 61 SIPFIDRDPE MFSILLSLLR TGNLPSKAKT FDIQDLVFES QFYGVEHLLL NSHSNPSQFE 121 PFDLEKSLIL PLSGRDSPTA ISTTQLGSVQ VAHGCKITSF DWSLKRKSTI LTQFAGIDSM 181 LSVSPNVVAA GATDFSGLQI IDVSKGFVKE TLNWENVTKS GSTVQGIGAS KEFLFTSFES 241 SRRNSNCIMI YDLSDNGFRP VSEIGHYEIF GAELDSAIPA TKLRWIPSYN LLMAAGSHSG 301 PSGVRGNIRF WDLRSGNAVW EIKENVDCFA DCTVSDDLSA ILKVGVHSGE VFISDLRNIG 361 KENTWTCLGD SRKATNGKKE GFGSKIESHG NQVFCSKGGN LELWSEVLIG SSIKDRVFRK 421 NSMGRAKDSC GNKITHFSFG GNKMFVTRKD QQFVEVWQSS VRGF- 3-phase translation of AGS-1 (+strand): . . . . . . 77546 TTAGTAGCAAATTGAAGTTTGATATTCCACTCTCTTTATATACATACAATTTGTGCAGTT L V A N - S L I F H S L Y I H T I C A V - - Q I E V - Y S T L F I Y I Q F V Q F S S K L K F D I P L S L Y T Y N L C S . . . . . . 77606 CAACTAAAGAAAGTATATACAGAATTTATAATAATGAGCAGCAAGAGTTAATAGATTGAT Q L K K V Y T E F I I M S S K S - - I D N - R K Y I Q N L - - - A A R V N R L I S T K E S I Y R I Y N N E Q Q E L I D - . . . . . . 77666 AATAAGATGGTCCTTCAGTCAGACTACTCTTCTCGTACTCTTCAAACATGTCTTGACTCA N K M V L Q S D Y S S R T L Q T C L D S I R W S F S Q T T L L V L F K H V L T H - - D G P S V R L L F S Y S S N M S - L . . . . . . 77726 CCACGATTGTTTATCAAAGAATGACTCTGGGGAGCAAACTTGTCTGTACTCTTCAAACAT P R L F I K E - L W G A N L S V L F K H H D C L S K N D S G E Q T C L Y S S N M T T I V Y Q R M T L G S K L V C T L Q T . . . . . . 77786 GTGTGACTCACTGTGAACATTTATCGAAGAATAACTCTGATTATCAAATGATTATGCACA V - L T V N I Y R R I T L I I K - L C T C D S L - T F I E E - L - L S N D Y A Q C V T H C E H L S K N N S D Y Q M I M H . . . . . . 77846 ACCAGGAGCAATTCACACGTGTCGTATCTTTCAAAAGTAGTAGTGTATTTTCGAAGAATC T R S N S H V S Y L S K V V V Y F R R I P G A I H T C R I F Q K - - C I F E E S N Q E Q F T R V V S F K S S S V F S K N . . . . . . 77906 TTAGAATCCCCTTACTGAACTCTGCCAAACTTCAACAAATTGTTGATCTTTCCTTGTAAC L E S P Y - T L P N F N K L L I F P C N - N P L T E L C Q T S T N C - S F L V T L R I P L L N S A K L Q Q I V D L S L - . . . . . . 77966 AAACATCTTGTTACCTCCAAAGCTGAAATGTGTTATCTTATTTCCACAACTATCTTTTGC K H L V T S K A E M C Y L I S T T I F C N I L L P P K L K C V I L F P Q L S F A Q T S C Y L Q S - N V L S Y F H N Y L L . . . . . . 78026 TCTCCCCATTGAGTTCTTCCTAAAGACTCGATCTTTAATCGAAGAACCAATCAAAACCTC S P H - V L P K D S I F N R R T N Q N L L P I E F F L K T R S L I E E P I K T S L S P L S S S - R L D L - S K N Q S K P . . . . . . 78086 AGACCATAATTCGAGATTTCCACCTTTACTACAAAAAACTTGATTCCCATGACTCTCAAT R P - F E I S T F T T K N L I P M T L N D H N S R F P P L L Q K T - F P - L S I Q T I I R D F H L Y Y K K L D S H D S Q . . . . . . 78146 TTTACTCCCAAACCCTTCTTTCTTACCATTTGTTGCTTTTCTTGAATCACCAAGACAAGT F T P K P F F L T I C C F S - I T K T S L L P N P S F L P F V A F L E S P R Q V F Y S Q T L L S Y H L L L F L N H Q D K . . . . . . 78206 CCAAGTATTTTCCTTACCAATGTTTCTCAAATCCGATATGAAAACTTCGCCTGAATGAAC P S I F L T N V S Q I R Y E N F A - M N Q V F S L P M F L K S D M K T S P E - T S K Y F P Y Q C F S N P I - K L R L N E . . . . . . 78266 GCCAACTTTCAGAATTGCTGAAAGATCATCCGAAACAGTGCAATCAGCGAAGCAATCAAC A N F Q N C - K I I R N S A I S E A I N P T F R I A E R S S E T V Q S A K Q S T R Q L S E L L K D H P K Q C N Q R S N Q . . . . . . 78326 ATTTTCCTTGATCTCCCACACCGCGTTCCCTGATCTCAAGTCCCAAAACCTAATGTTCCC I F L D L P H R V P - S Q V P K P N V P F S L I S H T A F P D L K S Q N L M F P H F P - S P T P R S L I S S P K T - C S . . . . . . 78386 TCTAACACCAGAAGGTCCACTGTGTGAACCAGCAGCCATCAACAAGTTATAACTAGGAAT S N T R R S T V - T S S H Q Q V I T R N L T P E G P L C E P A A I N K L - L G I L - H Q K V H C V N Q Q P S T S Y N - E . . . . . . 78446 CCATCTAAGTTTAGTAGCTGGAATCGCGGAATCTAATTCAGCACCAAAGATTTCATAATG P S K F S S W N R G I - F S T K D F I M H L S L V A G I A E S N S A P K I S - - S I - V - - L E S R N L I Q H Q R F H N . . . . . . 78506 ACCTATCTCAGAAACAGGCCTAAAACCATTATCACTCAAATCATATATCATAATGCAGTT T Y L R N R P K T I I T Q I I Y H N A V P I S E T G L K P L S L K S Y I I M Q L D L S Q K Q A - N H Y H S N H I S - C S . . . . . . 78566 AGAGTTTCTCCTAGATGATTCGAAACTCGTAAACAAAAACTCTTTTGAAGCACCTATGCC R V S P R - F E T R K Q K L F - S T Y A E F L L D D S K L V N K N S F E A P M P - S F S - M I R N S - T K T L L K H L C . . . . . . 78626 TTGTACTGTTGAACCAGACTTGGTAACATTTTCCCAATTCAAAGTTTCTTTAACAAAACC L Y C - T R L G N I F P I Q S F F N K T C T V E P D L V T F S Q F K V S L T K P L V L L N Q T W - H F P N S K F L - Q N . . . . . . 78686 TTTACTAACATCAATAATTTGTAAACCTGAAAAGTCAGTAGCACCAGCAGCAACAACATT F T N I N N L - T - K V S S T S S N N I L L T S I I C K P E K S V A P A A T T F L Y - H Q - F V N L K S Q - H Q Q Q Q H . . . . . . 78746 TGGTGATACAGATAACATAGAGTCAATACCAGCAAATTGTGTTAAAATGGTTGATTTTCT W - Y R - H R V N T S K L C - N G - F S G D T D N I E S I P A N C V K M V D F L L V I Q I T - S Q Y Q Q I V L K W L I F . . . . . . 78806 CTTTAATGACCAATCAAATGAAGTGATTTTACAACCATGAGCTACCTGAACTGACCCTAA L - - P I K - S D F T T M S Y L N - P - F N D Q S N E V I L Q P - A T - T D P N S L M T N Q M K - F Y N H E L P E L T L . . . . . . 78866 TTGAGTTGTTGAGATAGCAGTAGGTGAATCCCTACCACTTAAAGGCAAAATCAAAGATTT L S C - D S S R - I P T T - R Q N Q R F - V V E I A V G E S L P L K G K I K D F I E L L R - Q - V N P Y H L K A K S K I . . . . . . 78926 TTCAAGATCAAAAGGCTCAAACTGAGAAGGGTTAGAATGGGAATTCAATAACAGATGCTC F K I K R L K L R R V R M G I Q - Q M L S R S K G S N - E G L E W E F N N R C S F Q D Q K A Q T E K G - N G N S I T D A . . . . . . 78986 AACACCATAAAACTGAGATTCAAAAACCAAATCTTGAATATCAAAAGTTTTGGCTTTTGA N T I K L R F K N Q I L N I K S F G F - T P - N - D S K T K S - I S K V L A F E Q H H K T E I Q K P N L E Y Q K F W L L . . . . . . 79046 AGGGAGATTCCCAGTTCTTAAAAGGGAAAGCAAGATTGAGAACATTTCTGGATCTCTATC R E I P S S - K G K Q D - E H F W I S I G R F P V L K R E S K I E N I S G S L S K G D S Q F L K G K A R L R T F L D L Y . . . . . . 79106 GATGAAAGGAATGGAACCATCAAGATTTGAAATTTCAGAAAGTATTGATTTTGAACCTGA D E R N G T I K I - N F R K Y - F - T - M K G M E P S R F E I S E S I D F E P D R - K E W N H Q D L K F Q K V L I L N L . . . . . . 79166 TTGCTTTAGGGTTTGTTTGGTTGTTTGAAAAAGATGACCACCTACATCAATGGTGACAAT L L - G L F G C L K K M T T Y I N G D N C F R V C L V V - K R - P P T S M V T I I A L G F V W L F E K D D H L H Q W - Q . . . . . . 79226 ATTTGAAGATGAATCAATGGAGTTTCTTGAAAAACCAGATGAAAGAGGATGAGATCCAAT I - R - I N G V S - K T R - K R M R S N F E D E S M E F L E K P D E R G - D P I Y L K M N Q W S F L K N Q M K E D E I Q . . . . . . 79286 AAAAGGTGGCATCTTTTATTGGGAAATTCTTGAAATTCAATGTAAAGACTCAATTTTTAT K R W H L L L G N S - N S M - R L N F Y K G G I F Y W E I L E I Q C K D S I F I - K V A S F I G K F L K F N V K T Q F L . . . . . . 79346 ATATTTTTTTCTTTGGAACTTTTTTCAAGAATGGTGATTTCAAAGCTTTGGGAATTCTTG I F F S L E L F S R M V I S K L W E F L Y F F L W N F F Q E W - F Q S F G N S - Y I F F F G T F F K N G D F K A L G I L . . . . . . 79406 AAATACAATGTAAAGACTCATTCTTTTGTGATTTTGTGTGATTCAAGAATGGTGTTTTTC K Y N V K T H S F V I L C D S R M V F F N T M - R L I L L - F C V I Q E W C F S E I Q C K D S F F C D F V - F K N G V F . . . . . 79466 AAGCTTTGGGAATGAATTCTTGAAATTTCAATGTAAAAAACTTTGTTT K L W E - I L E I S M - K T L F S F G N E F L K F Q C K K L C Q A L G M N S - N F N V K N F V Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-17_AGS-1_PPS_1 (78507 78845) (frame '2'; 336 bp, 112 residues) 1 PISETGLKPL SLKSYIIMQL EFLLDDSKLV NKNSFEAPMP CTVEPDLVTF SQFKVSLTKP 61 LLTSIICKPE KSVAPAATTF GDTDNIESIP ANCVKMVDFL FNDQSNEVIL QP- >C08SLe0084H03.1+_PGL-17_AGS-1_PPS_2 (77722 77964) (frame '0'; 240 bp, 80 residues) 1 LTTIVYQRMT LGSKLVCTLQ TCVTHCEHLS KNNSDYQMIM HNQEQFTRVV SFKSSSVFSK 61 NLRIPLLNSA KLQQIVDLSL - PGL 18 (- strand): 85182 80734 AGS-1 (81619 80734) SCR (e 0.993) Exon 1 81619 80734 ( 886 n); score: 0.993 PGS (81247 80734) SGN-E368669- PGS (81562 80840) SGN-E368670+ PGS (81562 81051) SGN-E241551+ PGS (81562 81091) SGN-E228059+ PGS (81562 81123) SGN-E371838+ PGS (81562 81137) SGN-E237639+ PGS (81619 81167) SGN-E336465+ 3-phase translation of AGS-1 (-strand): . . . . . . 81619 TTGTGAGGTGTGTGGAAAAGAAGCCAACTATGATGATGAGAACTGGATCAGTGTCTCTCC L - G V W K R S Q L - - - E L D Q C L S C E V C G K E A N Y D D E N W I S V S P V R C V E K K P T M M M R T G S V S L . . . . . . 81559 AGGATACTGAGCGTAGCACTAAACGACAGGAAAACCTGGCTGAAATGTCAAATGCACACG R I L S V A L N D R K T W L K C Q M H T G Y - A - H - T T G K P G - N V K C T R Q D T E R S T K R Q E N L A E M S N A H . . . . . . 81499 ATCACAGTGGACATGAGCCTTCCAGAGAAATACACGAGGGATCATCTACTGACGGAGAGG I T V D M S L P E K Y T R D H L L T E R S Q W T - A F Q R N T R G I I Y - R R G D H S G H E P S R E I H E G S S T D G E . . . . . . 81439 ATGGACAGAGGCAGCAGAAGCACAGGTCCATCACTCTTGGATCCTCGAAGGAATTTAACT M D R G S R S T G P S L L D P R R N L T W T E A A E A Q V H H S W I L E G I - L D G Q R Q Q K H R S I T L G S S K E F N . . . . . . 81379 TTGACAATGTAGACGGGGGATATCCTGATAAAGCTACTATTGGCTCTGACTGGTGGGCCA L T M - T G D I L I K L L L A L T G G P - Q C R R G I S - - S Y Y W L - L V G Q F D N V D G G Y P D K A T I G S D W W A . . . . . . 81319 ACGAGAAAGTTCTTGGAAAGGAGCCCTGCAATAACTGGATCTTCCCTATGATGCAGCCTG T R K F L E R S P A I T G S S L - C S L R E S S W K G A L Q - L D L P Y D A A W N E K V L G K E P C N N W I F P M M Q P . . . . . . 81259 GTGTCAGCTAACAGGTTTGCATTCCTTTAGTAAATCCACACCATACTAATAAGCTGCTGT V S A N R F A F L - - I H T I L I S C C C Q L T G L H S F S K S T P Y - - A A V G V S - Q V C I P L V N P H H T N K L L . . . . . . 81199 TCATCTGCCTTAAATTTCAATACAACCAGCAGCAAATACCGGAAAACTCTTGATATCAAA S S A L N F N T T S S K Y R K T L D I K H L P - I S I Q P A A N T G K L L I S K F I C L K F Q Y N Q Q Q I P E N S - Y Q . . . . . . 81139 ACGTACAAGAATGACGAGGGTGTTGAAGGGAATGATGTGCAGCAGGACTGATAATAGAAA T Y K N D E G V E G N D V Q Q D - - - K R T R M T R V L K G M M C S R T D N R N N V Q E - R G C - R E - C A A G L I I E . . . . . . 81079 TTGATACGAACGAAGGCTGTTTTTTTGGGGCACTTCCTGAACCTAGGATAAGATAGATAG L I R T K A V F L G H F L N L G - D R - - Y E R R L F F W G T S - T - D K I D R I D T N E G C F F G A L P E P R I R - I . . . . . . 81019 GGATGTATTTTAGAAATTACCATTTGATAAAACTAGTTTTGCTCTCCCCTCACTGAGAGT G C I L E I T I - - N - F C S P L T E S D V F - K L P F D K T S F A L P S L R V G M Y F R N Y H L I K L V L L S P H - E . . . . . . 80959 TTTTACATTTAACTAATAGTCTACTTTCTTTTTTTGCCTTCTAGCTCCTCTATGTATAAT F Y I - L I V Y F L F L P S S S S M Y N F T F N - - S T F F F C L L A P L C I I F L H L T N S L L S F F A F - L L Y V - . . . . . . 80899 AACATAAATAATTTGTTAAAAGCAGTGTAGAAGATAATGATAGTAATGTTCATTTTGTTT N I N N L L K A V - K I M I V M F I L F T - I I C - K Q C R R - - - - C S F C L - H K - F V K S S V E D N D S N V H F V . . . . . . 80839 GATGTTATAATATTGAACTGAGACGAGTTTGAATAGAGTGACATTGAATGTGAGAATTCA D V I I L N - D E F E - S D I E C E N S M L - Y - T E T S L N R V T L N V R I H - C Y N I E L R R V - I E - H - M - E F . . . . . 80779 TGGTTGATCCTACCTTGAGACGAGGTGAATGAACCTTGGAGGCTGG W L I L P - D E V N E P W R L G - S Y L E T R - M N L G G W M V D P T L R R G E - T L E A Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-18_AGS-1_PPS_1 (81617 81249) (frame '0'; 366 bp, 122 residues) 1 VRCVEKKPTM MMRTGSVSLQ DTERSTKRQE NLAEMSNAHD HSGHEPSREI HEGSSTDGED 61 GQRQQKHRSI TLGSSKEFNF DNVDGGYPDK ATIGSDWWAN EKVLGKEPCN NWIFPMMQPG 121 VS- 3-phase translation of AGS-1 (+strand): . . . . . . 80734 CCAGCCTCCAAGGTTCATTCACCTCGTCTCAAGGTAGGATCAACCATGAATTCTCACATT P A S K V H S P R L K V G S T M N S H I Q P P R F I H L V S R - D Q P - I L T F S L Q G S F T S S Q G R I N H E F S H . . . . . . 80794 CAATGTCACTCTATTCAAACTCGTCTCAGTTCAATATTATAACATCAAACAAAATGAACA Q C H S I Q T R L S S I L - H Q T K - T N V T L F K L V S V Q Y Y N I K Q N E H S M S L Y S N S S Q F N I I T S N K M N . . . . . . 80854 TTACTATCATTATCTTCTACACTGCTTTTAACAAATTATTTATGTTATTATACATAGAGG L L S L S S T L L L T N Y L C Y Y T - R Y Y H Y L L H C F - Q I I Y V I I H R G I T I I I F Y T A F N K L F M L L Y I E . . . . . . 80914 AGCTAGAAGGCAAAAAAAGAAAGTAGACTATTAGTTAAATGTAAAAACTCTCAGTGAGGG S - K A K K E S R L L V K C K N S Q - G A R R Q K K K V D Y - L N V K T L S E G E L E G K K R K - T I S - M - K L S V R . . . . . . 80974 GAGAGCAAAACTAGTTTTATCAAATGGTAATTTCTAAAATACATCCCTATCTATCTTATC E S K T S F I K W - F L K Y I P I Y L I R A K L V L S N G N F - N T S L S I L S G E Q N - F Y Q M V I S K I H P Y L S Y . . . . . . 81034 CTAGGTTCAGGAAGTGCCCCAAAAAAACAGCCTTCGTTCGTATCAATTTCTATTATCAGT L G S G S A P K K Q P S F V S I S I I S - V Q E V P Q K N S L R S Y Q F L L S V P R F R K C P K K T A F V R I N F Y Y Q . . . . . . 81094 CCTGCTGCACATCATTCCCTTCAACACCCTCGTCATTCTTGTACGTTTTGATATCAAGAG P A A H H S L Q H P R H S C T F - Y Q E L L H I I P F N T L V I L V R F D I K S S C C T S F P S T P S S F L Y V L I S R . . . . . . 81154 TTTTCCGGTATTTGCTGCTGGTTGTATTGAAATTTAAGGCAGATGAACAGCAGCTTATTA F S G I C C W L Y - N L R Q M N S S L L F P V F A A G C I E I - G R - T A A Y - V F R Y L L L V V L K F K A D E Q Q L I . . . . . . 81214 GTATGGTGTGGATTTACTAAAGGAATGCAAACCTGTTAGCTGACACCAGGCTGCATCATA V W C G F T K G M Q T C - L T P G C I I Y G V D L L K E C K P V S - H Q A A S - S M V W I Y - R N A N L L A D T R L H H . . . . . . 81274 GGGAAGATCCAGTTATTGCAGGGCTCCTTTCCAAGAACTTTCTCGTTGGCCCACCAGTCA G K I Q L L Q G S F P R T F S L A H Q S G R S S Y C R A P F Q E L S R W P T S Q R E D P V I A G L L S K N F L V G P P V . . . . . . 81334 GAGCCAATAGTAGCTTTATCAGGATATCCCCCGTCTACATTGTCAAAGTTAAATTCCTTC E P I V A L S G Y P P S T L S K L N S F S Q - - L Y Q D I P R L H C Q S - I P S R A N S S F I R I S P V Y I V K V K F L . . . . . . 81394 GAGGATCCAAGAGTGATGGACCTGTGCTTCTGCTGCCTCTGTCCATCCTCTCCGTCAGTA E D P R V M D L C F C C L C P S S P S V R I Q E - W T C A S A A S V H P L R Q - R G S K S D G P V L L L P L S I L S V S . . . . . . 81454 GATGATCCCTCGTGTATTTCTCTGGAAGGCTCATGTCCACTGTGATCGTGTGCATTTGAC D D P S C I S L E G S C P L - S C A F D M I P R V F L W K A H V H C D R V H L T R - S L V Y F S G R L M S T V I V C I - . . . . . . 81514 ATTTCAGCCAGGTTTTCCTGTCGTTTAGTGCTACGCTCAGTATCCTGGAGAGACACTGAT I S A R F S C R L V L R S V S W R D T D F Q P G F P V V - C Y A Q Y P G E T L I H F S Q V F L S F S A T L S I L E R H - . . . . . 81574 CCAGTTCTCATCATCATAGTTGGCTTCTTTTCCACACACCTCACAA P V L I I I V G F F S T H L T Q F S S S - L A S F P H T S Q S S S H H H S W L L F H T P H Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1+_PGL-18_AGS-1_PPS_2 (80988 81233) (frame '0'; 243 bp, 81 residues) 1 FYQMVISKIH PYLSYPRFRK CPKKTAFVRI NFYYQSCCTS FPSTPSSFLY VLISRVFRYL 61 LLVVLKFKAD EQQLISMVWI Y- >C08SLe0084H03.1+_PGL-18_AGS-1_PPS_1 (81253 81498) (frame '1'; 243 bp, 81 residues) 1 LTPGCIIGKI QLLQGSFPRT FSLAHQSEPI VALSGYPPST LSKLNSFEDP RVMDLCFCCL 61 CPSSPSVDDP SCISLEGSCP L- >C08SLe0084H03.1+_PGL-18_AGS-1_PPS_3 (81234 81458) (frame '0'; 222 bp, 74 residues) 1 RNANLLADTR LHHREDPVIA GLLSKNFLVG PPVRANSSFI RISPVYIVKV KFLRGSKSDG 61 PVLLLPLSIL SVSR- >C08SLe0084H03.1+_PGL-18_AGS-1_PPS_4 (80736 80939) (frame '0'; 201 bp, 67 residues) 1 SLQGSFTSSQ GRINHEFSHS MSLYSNSSQF NIITSNKMNI TIIIFYTAFN KLFMLLYIEE 61 LEGKKRK- AGS-2 (85182 84946,82466 81630) SCR (e 1.000 d 1.000 a 0.997,e 0.998) Exon 1 85182 84946 ( 237 n); score: 1.000 Intron 1 84945 82467 (2479 n); Pd: 1.000 Pa: 0.997 Exon 2 82466 81630 ( 837 n); score: 0.998 PGS (82153 81630) SGN-E242817+ PGS (82188 81664) SGN-E200236+ PGS (85173 84946,82466 81916) SGN-E332130+ PGS (85182 84946,82466 81955) SGN-E333446+ PGS (85182 84946,82466 81976) SGN-E333399+ 3-phase translation of AGS-2 (-strand): . . . . . . 85182 TTACCGGAAAAAGTTTGTGATTTTCGATCGGAAAAGTGAGTTCCGGCGATGCTCTAGAGC L P E K V C D F R S E K - V P A M L - S Y R K K F V I F D R K S E F R R C S R A T G K S L - F S I G K V S S G D A L E . . . . . . 85122 TGAGGAGGAGTCGTCGGAGTTTAGGAATTTTGAGGTGATTCGTTGTGTAAAAGCGAAGAG - G G V V G V - E F - G D S L C K S E E E E E S S E F R N F E V I R C V K A K R L R R S R R S L G I L R - F V V - K R R . . . . . . 85062 AAGATGAATAGAGTGAACGGAGAGCAGAGAGGAGTTGATAGCACTTTGGAGACGATAAAC K M N R V N G E Q R G V D S T L E T I N R - I E - T E S R E E L I A L W R R - T E D E - S E R R A E R S - - H F G D D K . . . . . . : 85002 GCTGCTGCTACTGCAATCGCTTCAGTTGAAAATCGTGTTCCTCAAGCCTCGATTCAG : AAA A A A T A I A S V E N R V P Q A S I Q : K L L L L Q S L Q L K I V F L K P R F R : N R C C Y C N R F S - K S C S S S L D S : E . . . . . . 82463 CGAAGATGGGGAAGCTGCTGGAGCATGTACTGGTGTTTTGGCTCTCAGAAACAGACGAAA R R W G S C W S M Y W C F G S Q K Q T K E D G E A A G A C T G V L A L R N R R N T K M G K L L E H V L V F W L S E T D E . . . . . . 82403 CGAATTGGACATGCAGTTTTTATTCCAGAAACAACAGCCTCTGCTGCAGATAGACCTTCT R I G H A V F I P E T T A S A A D R P S E L D M Q F L F Q K Q Q P L L Q I D L L T N W T C S F Y S R N N S L C C R - T F . . . . . . 82343 TCTAATACTTCAAGTCAAGCTCCTTCTATAGTGCTTCCCTTCATAGCACCCCCCTCATCT S N T S S Q A P S I V L P F I A P P S S L I L Q V K L L L - C F P S - H P P H L F - Y F K S S S F Y S A S L H S T P L I . . . . . . 82283 CCTGCATCTTTCTTGCCATCAGAACCTCCTTCAGCAACCCATTCACCAGTTGGCTCAAAA P A S F L P S E P P S A T H S P V G S K L H L S C H Q N L L Q Q P I H Q L A Q N S C I F L A I R T S F S N P F T S W L K . . . . . . 82223 TGCCTTTCTATGTCTACATATTCTCCCAGTGGACCTGCCTCAATTTTTGCTATTGGGCCC C L S M S T Y S P S G P A S I F A I G P A F L C L H I L P V D L P Q F L L L G P M P F Y V Y I F S Q W T C L N F C Y W A . . . . . . 82163 TACGCTCATGAAACTCAACTGGTCTCTCCACCTGTTTTCTCTGCATTCACTACTGAACCA Y A H E T Q L V S P P V F S A F T T E P T L M K L N W S L H L F S L H S L L N H L R S - N S T G L S T C F L C I H Y - T . . . . . . 82103 TCTACTGCTCCATTTACCCCTCCTCCTGAGTCAGTCCACTTGACTACACCCTCATCACCT S T A P F T P P P E S V H L T T P S S P L L L H L P L L L S Q S T - L H P H H L I Y C S I Y P S S - V S P L D Y T L I T . . . . . . 82043 GAGGTACCATTTGCTAAGCTGCTTGACCCCAACTACCAGAATGTTGCTGCTGGTCACAGA E V P F A K L L D P N Y Q N V A A G H R R Y H L L S C L T P T T R M L L L V T D - G T I C - A A - P Q L P E C C C W S Q . . . . . . 81983 TATCCTTTTGCCCAGTATGAATTTCAGTCATACCAACTTCAACCAGGGAGTCCAGTCAGT Y P F A Q Y E F Q S Y Q L Q P G S P V S I L L P S M N F S H T N F N Q G V Q S V I S F C P V - I S V I P T S T R E S S Q . . . . . . 81923 AACTTGATCTCGCCTGGGTCAGCCATCTCTGTATCTGGAACTTCATCTCCTTTTCTTGAG N L I S P G S A I S V S G T S S P F L E T - S R L G Q P S L Y L E L H L L F L S - L D L A W V S H L C I W N F I S F S - . . . . . . 81863 CGTGAGTATACTCCTGGACGCCCTCAGTTCCTGAACCTGGAGAAAATAGCCCCTCACGAG R E Y T P G R P Q F L N L E K I A P H E V S I L L D A L S S - T W R K - P L T S A - V Y S W T P S V P E P G E N S P S R . . . . . . 81803 TGGGGATCTCGGCAAGGATCTGGGACTTTGACCCCTGAGGCAGTAAACCCCAAATATCAC W G S R Q G S G T L T P E A V N P K Y H G D L G K D L G L - P L R Q - T P N I T V G I S A R I W D F D P - G S K P Q I S . . . . . . 81743 GATAGTTTCCTTCTCAATTATCAGAACACTGGTGTTCATCGTCTTCCAAAGCCCTTTAAT D S F L L N Y Q N T G V H R L P K P F N I V S F S I I R T L V F I V F Q S P L M R - F P S Q L S E H W C S S S S K A L - . . . . . . 81683 GGTTGGAAAAACGATCTAACAGTGGTTGATCATAGAGTTTCTTTCGAGATTACT G W K N D L T V V D H R V S F E I T V G K T I - Q W L I I E F L S R L W L E K R S N S G - S - S F F R D Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-18_AGS-2_PPS_1 (85089 84946,82466 81630) (frame '1'; 981 bp, 327 residues) 1 GDSLCKSEEK MNRVNGEQRG VDSTLETINA AATAIASVEN RVPQASIQKR RWGSCWSMYW 61 CFGSQKQTKR IGHAVFIPET TASAADRPSS NTSSQAPSIV LPFIAPPSSP ASFLPSEPPS 121 ATHSPVGSKC LSMSTYSPSG PASIFAIGPY AHETQLVSPP VFSAFTTEPS TAPFTPPPES 181 VHLTTPSSPE VPFAKLLDPN YQNVAAGHRY PFAQYEFQSY QLQPGSPVSN LISPGSAISV 241 SGTSSPFLER EYTPGRPQFL NLEKIAPHEW GSRQGSGTLT PEAVNPKYHD SFLLNYQNTG 301 VHRLPKPFNG WKNDLTVVDH RVSFEIT PGL 19 (- strand): 98780 90648 AGS-1 (98780 98709,97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93101,92931 92783,92696 92558,92466 92320,92229 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90648) SCR (e 0.986 d 0.998 a 0.864,e 1.000 d 0.975 a 0.994,e 1.000 d 0.966 a 0.992,e 1.000 d 0.971 a 0.890,e 1.000 d 1.000 a 0.993,e 1.000 d 0.978 a 0.999,e 1.000 d 0.923 a 0.984,e 1.000 d 0.999 a 0.983,e 1.000 d 0.991 a 1.000,e 1.000 d 0.987 a 0.996,e 1.000 d 0.994 a 0.999,e 1.000 d 0.310 a 1.000,e 1.000 d 0.996 a 0.976,e 1.000 d 0.994 a 0.101,e 1.000 d 0.334 a 0.874,e 1.000 d 0.996 a 0.992,e 1.000 d 0.972 a 0.998,e 1.000 d 0.866 a 0.000,e 1.000 d 1.000 a 1.000,e 1.000 d 0.960 a 0.993,e 1.000 d 0.898 a 0.934,e 1.000 d 0.781 a 0.982,e 1.000 d 0.993 a 0.893,e 1.000 d 0.862 a 0.995,e 1.000 d 0.997 a 0.999,e 1.000 d 0.992 a 0.999,e 1.000 d 0.997 a 0.998,e 1.000 d 0.993 a 0.957,e 1.000 d 0.891 a 0.993,e 1.000 d 0.985 a 0.984,e 1.000 d 0.986 a 0.972,e 1.000 d 0.988 a 0.982,e 0.993) Exon 1 98780 98709 ( 72 n); score: 0.986 Intron 1 98708 97592 (1117 n); Pd: 0.998 Pa: 0.864 Exon 2 97591 97514 ( 78 n); score: 1.000 Intron 2 97513 97381 ( 133 n); Pd: 0.975 Pa: 0.994 Exon 3 97380 97336 ( 45 n); score: 1.000 Intron 3 97335 97240 ( 96 n); Pd: 0.966 Pa: 0.992 Exon 4 97239 97099 ( 141 n); score: 1.000 Intron 4 97098 97016 ( 83 n); Pd: 0.971 Pa: 0.890 Exon 5 97015 96940 ( 76 n); score: 1.000 Intron 5 96939 96715 ( 225 n); Pd: 1.000 Pa: 0.993 Exon 6 96714 96638 ( 77 n); score: 1.000 Intron 6 96637 96526 ( 112 n); Pd: 0.978 Pa: 0.999 Exon 7 96525 96412 ( 114 n); score: 1.000 Intron 7 96411 96303 ( 109 n); Pd: 0.923 Pa: 0.984 Exon 8 96302 96228 ( 75 n); score: 1.000 Intron 8 96227 96144 ( 84 n); Pd: 0.999 Pa: 0.983 Exon 9 96143 96036 ( 108 n); score: 1.000 Intron 9 96035 95939 ( 97 n); Pd: 0.991 Pa: 1.000 Exon 10 95938 95726 ( 213 n); score: 1.000 Intron 10 95725 95634 ( 92 n); Pd: 0.987 Pa: 0.996 Exon 11 95633 95572 ( 62 n); score: 1.000 Intron 11 95571 95445 ( 127 n); Pd: 0.994 Pa: 0.999 Exon 12 95444 95417 ( 28 n); score: 1.000 Intron 12 95416 95327 ( 90 n); Pd: 0.310 Pa: 1.000 Exon 13 95326 95240 ( 87 n); score: 1.000 Intron 13 95239 95139 ( 101 n); Pd: 0.996 Pa: 0.976 Exon 14 95138 95113 ( 26 n); score: 1.000 Intron 14 95112 94758 ( 355 n); Pd: 0.994 Pa: 0.101 Exon 15 94757 94694 ( 64 n); score: 1.000 Intron 15 94693 94610 ( 84 n); Pd: 0.334 Pa: 0.874 Exon 16 94609 94529 ( 81 n); score: 1.000 Intron 16 94528 94387 ( 142 n); Pd: 0.996 Pa: 0.992 Exon 17 94386 94339 ( 48 n); score: 1.000 Intron 17 94338 94237 ( 102 n); Pd: 0.972 Pa: 0.998 Exon 18 94236 94218 ( 19 n); score: 1.000 Intron 18 94217 94080 ( 138 n); Pd: 0.866 Pa: 0.000 Exon 19 94079 94075 ( 5 n); score: 1.000 Intron 19 94074 93961 ( 114 n); Pd: 1.000 Pa: 1.000 Exon 20 93960 93949 ( 12 n); score: 1.000 Intron 20 93948 93794 ( 155 n); Pd: 0.960 Pa: 0.993 Exon 21 93793 93737 ( 57 n); score: 1.000 Intron 21 93736 93638 ( 99 n); Pd: 0.898 Pa: 0.934 Exon 22 93637 93528 ( 110 n); score: 1.000 Intron 22 93527 93445 ( 83 n); Pd: 0.781 Pa: 0.982 Exon 23 93444 93364 ( 81 n); score: 1.000 Intron 23 93363 93285 ( 79 n); Pd: 0.993 Pa: 0.893 Exon 24 93284 93101 ( 184 n); score: 1.000 Intron 24 93100 92932 ( 169 n); Pd: 0.862 Pa: 0.995 Exon 25 92931 92783 ( 149 n); score: 1.000 Intron 25 92782 92697 ( 86 n); Pd: 0.997 Pa: 0.999 Exon 26 92696 92558 ( 139 n); score: 1.000 Intron 26 92557 92467 ( 91 n); Pd: 0.992 Pa: 0.999 Exon 27 92466 92320 ( 147 n); score: 1.000 Intron 27 92319 92230 ( 90 n); Pd: 0.997 Pa: 0.998 Exon 28 92229 92148 ( 82 n); score: 1.000 Intron 28 92147 92065 ( 83 n); Pd: 0.993 Pa: 0.957 Exon 29 92064 91892 ( 173 n); score: 1.000 Intron 29 91891 91719 ( 173 n); Pd: 0.891 Pa: 0.993 Exon 30 91718 91608 ( 111 n); score: 1.000 Intron 30 91607 91427 ( 181 n); Pd: 0.985 Pa: 0.984 Exon 31 91426 91310 ( 117 n); score: 1.000 Intron 31 91309 91115 ( 195 n); Pd: 0.986 Pa: 0.972 Exon 32 91114 91043 ( 72 n); score: 1.000 Intron 32 91042 90934 ( 109 n); Pd: 0.988 Pa: 0.982 Exon 33 90933 90648 ( 286 n); score: 0.993 PGS (92167 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90648) SGN-E343444+ PGS (91400 91310,91114 91043,90933 90714) SGN-E340008+ PGS (91104 91043,90933 90714) SGN-E233849- PGS (92039 91892,91718 91608,91426 91310,91114 91043,90933 90718) SGN-E210817+ PGS (91080 91043,90933 90739) SGN-E237798+ PGS (91706 91608,91426 91310,91114 91043,90933 90746) SGN-E227473- PGS (91634 91608,91426 91310,91114 91043,90933 90746) SGN-E227401- PGS (92397 92320,92229 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90752) SGN-E262239- PGS (91645 91608,91426 91310,91114 91043,90933 90752) SGN-E246816+ PGS (92167 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90797) SGN-E347400+ PGS (92215 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90916) SGN-E337363+ PGS (92363 92320,92229 92148,92064 91892,91718 91608,91426 91317) SGN-E275104+ PGS (92196 92148,92064 91892,91718 91608,91426 91317) SGN-E272827+ PGS (92025 91892,91718 91608) SGN-E236303+ PGS (92401 92320,92229 92148,92064 91892,91718 91611) SGN-E287751+ PGS (92793 92783,92696 92558,92466 92320,92229 92148,92064 91892,91718 91674) SGN-E246874+ PGS (93156 93101,92931 92783,92696 92558,92466 92320,92229 92148,92064 91919) SGN-E333427+ PGS (92466 92320,92229 92148,92064 91958) SGN-E337485+ PGS (93133 93101,92931 92783,92696 92558,92466 92320,92229 92181) SGN-E267027+ PGS (92931 92783,92696 92558,92466 92320,92229 92199) SGN-E253146+ PGS (92634 92558,92466 92320,92229 92218) SGN-E251210+ PGS (93636 93528,93444 93364,93284 93101,92931 92783,92696 92558,92466 92398) SGN-E264602+ PGS (93228 93101,92931 92783,92696 92558,92466 92409) SGN-E330552+ PGS (93609 93528,93444 93364,93284 93101,92931 92783,92696 92573) SGN-E304696+ PGS (93767 93737,93637 93528,93444 93364,93284 93101,92931 92783,92696 92637) SGN-E314800+ PGS (93637 93528,93444 93364,93284 93101,92931 92783,92696 92641) SGN-E256827+ PGS (93636 93528,93444 93364,93284 93101,92931 92783,92696 92642) SGN-E272890+ PGS (93959 93949,93793 93737,93637 93528,93444 93364,93284 93108) SGN-E282411+ PGS (94346 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93121) SGN-E338903+ PGS (95582 95572,95444 95417,95326 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93144) SGN-E556793+ PGS (93637 93528,93444 93364,93284 93157) SGN-E261262+ PGS (94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93184) SGN-E254450+ PGS (94583 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364) SGN-E311926+ PGS (94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93378) SGN-E203748+ PGS (93769 93737,93637 93528,93444 93378) SGN-E290100+ PGS (94585 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93381) SGN-E200693+ PGS (94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93423) SGN-E203828+ PGS (95248 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93573) SGN-E252041+ PGS (94716 94694,94609 94529,94386 94339,94236 94220) SGN-E335076+ PGS (96251 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95240,95138 95113) SGN-E249739+ PGS (95928 95726,95633 95572,95444 95417,95326 95240,95138 95113) SGN-E200070+ PGS (96433 96412,96302 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95265) SGN-E333309+ PGS (96111 96036,95938 95726,95633 95572,95444 95417,95326 95269) SGN-E295660+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96036,95938 95927) SGN-E333887+ PGS (97342 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96040) SGN-E331665+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96055) SGN-E316327+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96081) SGN-E556817+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96083) SGN-E554724+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96113) SGN-E554726+ PGS (96714 96638,96525 96412,96302 96228,96143 96129) SGN-E556932+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96133) SGN-E555929+ PGS (96707 96638,96525 96412,96302 96275) SGN-E554729+ PGS (98780 98709,97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96421) SGN-E330303+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96446) SGN-E557137+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96489) SGN-E554667+ PGS (97591 97514,97380 97336,97239 97099,97015 96940,96714 96663) SGN-E311568+ PGS (97591 97514,97380 97336,97239 97099,97015 97007) SGN-E338735+ 3-phase translation of AGS-1 (-strand): . . . . . . 98780 ATAAAAAGATTATAGCAGAAGGAGTTTTGTGTTCTTGTTGATCAACCCTTTTGCAAATCA I K R L - Q K E F C V L V D Q P F C K S - K D Y S R R S F V F L L I N P F A N H K K I I A E G V L C S C - S T L L Q I . . : . . . . 98720 TCATCAATAGAG : TTTCAGGCAAGTTGCCGTGTTACTTCAGTTGGGCGCTCGAGGGATATC S S I E : F Q A S C R V T S V G R S R D I H Q - S : F R Q V A V L L Q L G A R G I S I I N R : V S G K L P C Y F S W A L E G Y . . . : . . . 97543 TGCAGATACAAAAAATACCTTACTTCAGAG : GTTGCGCATTGGAGGAGGTGTCAAATCCCG C R Y K K Y L T S E : V A H W R R C Q I P A D T K N T L L Q R : L R I G G G V K S R L Q I Q K I P Y F R : G C A L E E V S N P . . : . . . . 97350 CGTTTTCCATTAGTT : CAACCTAGAAGAATTGACCGGAGATTAATCTGTTCAGTTGCAACT R F P L V : Q P R R I D R R L I C S V A T V F H - F : N L E E L T G D - S V Q L Q L A F S I S : S T - K N - P E I N L F S C N . . . . . . 97194 GAACCTCTACCAAAAGAAGTTGAAGAATCCAAGATGGAAGCACCAAAGGAAATCTTTCTG E P L P K E V E E S K M E A P K E I F L N L Y Q K K L K N P R W K H Q R K S F - - T S T K R S - R I Q D G S T K G N L S . . . . : . . 97134 AAGGATTACAAACAACCTGATTACTATTTTGACACG : TTGGATCTGAAATTCGCACTGGGT K D Y K Q P D Y Y F D T : L D L K F A L G R I T N N L I T I L T R : W I - N S H W V E G L Q T T - L L F - H : V G S E I R T G . . . . . . : 96991 GAGGAAAGTACTATTGTCGCTTCCAAAATTGCTGTCAACCCCAGAGTTGAAG : GTCAGTCT E E S T I V A S K I A V N P R V E : G Q S R K V L L S L P K L L S T P E L K : V S L - G K Y Y C R F Q N C C Q P Q S - R : S V . . . . . . 96706 TTCCCACTTGTCCTAGATGGGCGAGATCTGAAGTTGCAATCAGTTAAGATCAACGGCAAT F P L V L D G R D L K L Q S V K I N G N S H L S - M G E I - S C N Q L R S T A I F P T C P R W A R S E V A I S - D Q R Q . : . . . . . 96646 CCGCTGAAG : GAGGAAGATTTCCACGTGGACTCGCGCCACCTGACTCTGAAATCCCCTCCA P L K : E E D F H V D S R H L T L K S P P R - R : R K I S T W T R A T - L - N P L Q S A E : G G R F P R G L A P P D S E I P S . . . . . . 96474 AGTAGCAAATTCACCTTGGAGATTGTGACAGAAATACATCCTCAGAAGAACACATCCTTA S S K F T L E I V T E I H P Q K N T S L V A N S P W R L - Q K Y I L R R T H P - K - Q I H L G D C D R N T S S E E H I L . : . . . . . 96414 GAG : GGTCTTTACAAGTCATCAGGGAATTTCTGCACCCAATGTGAGGCTGAGGGTTTCCGT E : G L Y K S S G N F C T Q C E A E G F R R : V F T S H Q G I S A P N V R L R V S V R : G S L Q V I R E F L H P M - G - G F P . . : . . . . 96245 AAGATTACGTTCTATCAG : GATCGCCCTGACATTATGGCAAAATACACTTGTCGCATAGAG K I T F Y Q : D R P D I M A K Y T C R I E R L R S I R : I A L T L W Q N T L V A - R - D Y V L S : G S P - H Y G K I H L S H R . . . . . . 96101 GCAGACAAATCCTTGTATCCTGTATTGTTGTCAAATGGAAACCTTATAGAGCAAGGGGAT A D K S L Y P V L L S N G N L I E Q G D Q T N P C I L Y C C Q M E T L - S K G I G R Q I L V S C I V V K W K P Y R A R G . : . . . . . 96041 CTGGAG : GGAGGAAAGCATTATACTCTTTGGGAGGATCCTTTCAAGAAGCCCAGTTATCTT L E : G G K H Y T L W E D P F K K P S Y L W R : E E S I I L F G R I L S R S P V I F S G : G R K A L Y S L G G S F Q E A Q L S . . . . . . 95884 TTTGCATTGGTTGCTGGTCAGTTGGTGAGCAGAGATGACACATTTACAACCTGTTCAGGC F A L V A G Q L V S R D D T F T T C S G L H W L L V S W - A E M T H L Q P V Q A F C I G C W S V G E Q R - H I Y N L F R . . . . . . 95824 CGTAAGGTCTCCCTTAGAATCTGGACCCCTGCACAAGATCTGCCCAAGACAGAACATGCC R K V S L R I W T P A Q D L P K T E H A V R S P L E S G P L H K I C P R Q N M P P - G L P - N L D P C T R S A Q D R T C . . . . : . . 95764 ATGTATTCTCTCAAGGCAGCTATGAAGTGGGATGAAGAT : GTTTTCGGGCGGGAGTATGAC M Y S L K A A M K W D E D : V F G R E Y D C I L S R Q L - S G M K M : F S G G S M T H V F S Q G S Y E V G - R : C F R A G V - . . . . . : . 95612 CTGGATCTTTTTAATATTGTTGCTGTTCCAGATTTTAACAT : GGGAGCAATGGAAAACAAG L D L F N I V A V P D F N M : G A M E N K W I F L I L L L F Q I L T : W E Q W K T R P G S F - Y C C C S R F - H : G S N G K Q . : . . . . . 95425 AGCTTGAAT : ATATTCAATTCCAAGCTTGTCCTGGCATCCCCAGAAACTGCAACAGATGCT S L N : I F N S K L V L A S P E T A T D A A - I : Y S I P S L S W H P Q K L Q Q M L E L E : Y I Q F Q A C P G I P R N C N R C . . . . : . . 95275 GATTATGCGGCTATATTGGGTGTGATTGGACATGAG : TACTTCCACAATTGGACAGGCAAC D Y A A I L G V I G H E : Y F H N W T G N I M R L Y W V - L D M S : T S T I G Q A T - L C G Y I G C D W T - : V L P Q L D R Q . : . . . . . 95114 AG : AGTTACATGTCGTGACTGGTTCCAGCTCAGTTTAAAGGAAGGACTTACTGTTTTCCGT R : V T C R D W F Q L S L K E G L T V F R : E L H V V T G S S S V - R K D L L F S V Q : S Y M S - L V P A Q F K G R T Y C F P . : . . . . . 94699 GATCAG : GAGTTTTCGTCTGATTTGGGCAGCCGTCCTGTGAAAAGAATTGCTGATGTCTCA D Q : E F S S D L G S R P V K R I A D V S I R : S F R L I W A A V L - K E L L M S Q - S : G V F V - F G Q P S C E K N C - C L . . . : . . . 94555 AAGCTTCGAATGTATCAGTTCCCGCAG : GATGCTGGTCCAATGGCTCATCCTGTAAGGCCT K L R M Y Q F P Q : D A G P M A H P V R P S F E C I S S R R : M L V Q W L I L - G L K A S N V S V P A : G C W S N G S S C K A . . : . . : : . . : 94353 CACTCTTATATAAAG : ATGGATAACTTCTACACAG : TTACG : GTATATGAGAAG : GGAGCTGAA H S Y I K : M D N F Y T : V T : V Y E K : G A E T L I - R : W I T S T Q : L R : Y M R R : E L K S L L Y K : D G - L L H S : Y : G I - E : G S - . . . . . : . 93784 GTGGTCAGGATGTACAAAACCTTGTTAGGTAGCCAAGGATTTAGAAAA : GGCACAGATTTA V V R M Y K T L L G S Q G F R K : G T D L W S G C T K P C - V A K D L E K : A Q I Y S G Q D V Q N L V R - P R I - K : R H R F . . . . . . 93625 TATTTTGAGAGGCATGATGGTCAAGCAGTAACATGTGAAGACTTTTTTGCTGCCATGCGA Y F E R H D G Q A V T C E D F F A A M R I L R G M M V K Q - H V K T F L L P C E I F - E A - W S S S N M - R L F C C H A . . . . : . . 93565 GATGCCAACAATGCAGATTTTGCTAATTTCTTGTTATG : GTACTCGCAAGCTGGGACACCT D A N N A D F A N F L L W : Y S Q A G T P M P T M Q I L L I S C Y : G T R K L G H L R C Q Q C R F C - F L V M : V L A S W D T . . . . . . : 93422 GTAGTGAAGGTTACCACAAATTATAATGCTGAAGGGCGCACTTTCTCCCTCAAGTTTAG : T V V K V T T N Y N A E G R T F S L K F S : - - R L P Q I I M L K G A L S P S S L : V C S E G Y H K L - C - R A H F L P Q V - : . . . . . . 93283 CAAGAGGTGCCTCCAACCCCCGGCCAGTCTGCAAAAGAACCTATGTTTATTCCTGTTGCT Q E V P P T P G Q S A K E P M F I P V A K R C L Q P P A S L Q K N L C L F L L L S R G A S N P R P V C K R T Y V Y S C C . . . . . . 93223 GTAGGTCTGCTGGATTCAAGTGGTAAGGACATGCCTCTATCTTCGGTTCATCATGATGGG V G L L D S S G K D M P L S S V H H D G - V C W I Q V V R T C L Y L R F I M M G C R S A G F K W - G H A S I F G S S - W . . . . . . 93163 AAATTGGAGAGTTTTGCGAGCAGTGGTCAAAACGTATACACCACAGTTCTCCGCGTAACG K L E S F A S S G Q N V Y T T V L R V T N W R V L R A V V K T Y T P Q F S A - R E I G E F C E Q W S K R I H H S S P R N . : . . . . . 93103 AAG : AAGGAGGAGGAATTTGTGTTCAATGACGTATCTGAGAGGCCAACACCATCGATATTG K : K E E E F V F N D V S E R P T P S I L R : R R R N L C S M T Y L R G Q H H R Y C E : E G G G I C V Q - R I - E A N T I D I . . . . . . 92874 CGAGGATTCAGTGCTCCCATCAGGCTTGAGTCTGATCTCACTGATAGTGATCTTCTTTTC R G F S A P I R L E S D L T D S D L L F E D S V L P S G L S L I S L I V I F F S A R I Q C S H Q A - V - S H - - - S S F . . . . : . . 92814 CTTCTTGCTCATGATTCTGATGAGTTTAACCG : GTGGGAGGCGGGACAAGTGTTGGCAAGG L L A H D S D E F N R : W E A G Q V L A R F L L M I L M S L T : G G R R D K C W Q G P S C S - F - - V - P : V G G G T S V G K . . . . . . 92668 AAGTTGATGCTCAGTCTGGTAGCTGATTTCCAACAGAATAAGGCTTTGGTTCTTAACCCT K L M L S L V A D F Q Q N K A L V L N P S - C S V W - L I S N R I R L W F L T L E V D A Q S G S - F P T E - G F G S - P . . . . . . : 92608 CAGTTTTTGCAGGGGATCAAAAGCATACTCACCGACTCAAGCTTGGATAAG : GAATTCATT Q F L Q G I K S I L T D S S L D K : E F I S F C R G S K A Y S P T Q A W I R : N S L S V F A G D Q K H T H R L K L G - : G I H . . . . . . 92457 GCAAAGGCAATAACTTTGCCTGGTATAGGAGAAATCATGGACATGATGACGGTTGCTGAT A K A I T L P G I G E I M D M M T V A D Q R Q - L C L V - E K S W T - - R L L I C K G N N F A W Y R R N H G H D D G C - . . . . . . 92397 CCAGATGCCGTTCATGCAGTGCGGACTTTCATCAGGAAGCAACTGGCTTCTGAATTGAAA P D A V H A V R T F I R K Q L A S E L K Q M P F M Q C G L S S G S N W L L N - N S R C R S C S A D F H Q E A T G F - I E . . : . . . . 92337 CAAGAGTTCCTTATCACT : GCTAAAAACAACAGGAGCTCTGGTGCTTATGAGTTTGATCAT Q E F L I T : A K N N R S S G A Y E F D H K S S L S L : L K T T G A L V L M S L I I T R V P Y H : C - K Q Q E L W C L - V - S . . . . : . . 92187 AACAATATGGCACGTCGTGCTCTTAAAAATATTGCTCTTG : CTTATCTTGGATCACTTGAA N N M A R R A L K N I A L : A Y L G S L E T I W H V V L L K I L L L : L I L D H L K - Q Y G T S C S - K Y C S C : L S W I T - . . . . . . 92044 AACCCAGAAATCACAGAACTTCTATTGAATGAATACAGAAACGCCACAAACATGACAGAT N P E I T E L L L N E Y R N A T N M T D T Q K S Q N F Y - M N T E T P Q T - Q I K P R N H R T S I E - I Q K R H K H D R . . . . . . 91984 CAGTTTGCAGCTTTAGTGGCTATCGATCAGCAACCTGCAATTCGTGAAGAAATTTTGGCT Q F A A L V A I D Q Q P A I R E E I L A S L Q L - W L S I S N L Q F V K K F W L S V C S F S G Y R S A T C N S - R N F G . . . . : . . 91924 GATTTCTATAACAAGTGGCAGGATGATTACTTG : GTTGTGAACAAGTGGCTTGCTCTTCAA D F Y N K W Q D D Y L : V V N K W L A L Q I S I T S G R M I T W : L - T S G L L F K - F L - Q V A G - L L : G C E Q V A C S S . . . . . . 91691 GCTATGTCAGACATGCCTGGTAATGTTGAGAATGTCAAGAAACTTCTAAACCATACAGCC A M S D M P G N V E N V K K L L N H T A L C Q T C L V M L R M S R N F - T I Q P S Y V R H A W - C - E C Q E T S K P Y S . . . : . . . 91631 TTTGACCTATGTAATCCAAATAAG : GTTTATTCGTTGATCGGAGGATTTTGTGGTTCACCT F D L C N P N K : V Y S L I G G F C G S P L T Y V I Q I R : F I R - S E D F V V H L L - P M - S K - : G L F V D R R I L W F T . . . . . . 91390 GTCAACTTCCATAGCAAGGATGGCTCCGGCTACAAGTTCTTGGGAGAACTAGTGGTGAAG V N F H S K D G S G Y K F L G E L V V K S T S I A R M A P A T S S W E N - W - S C Q L P - Q G W L R L Q V L G R T S G E . . . : . . . 91330 CTTGACAAGATGAATCCACAG : GTGGCTTCACGAATGGTTTCAGCGTTCTCCAGGTGGAAA L D K M N P Q : V A S R M V S A F S R W K L T R - I H R : W L H E W F Q R S P G G N A - Q D E S T : G G F T N G F S V L Q V E . . . . : . . 91075 CGTTATGATGAAACAAGACAGAGTCTCGCGAAG : GAACAATTGGAGATGATCTTGTCTACT R Y D E T R Q S L A K : E Q L E M I L S T V M M K Q D R V S R R : N N W R - S C L L T L - - N K T E S R E : G T I G D D L V Y . . . . . . 90906 GAGGGACTCTCAGAGAATGTGTTTGAAATCGCATCGAAGAGCTTGGCAGCTTGATTTTTA E G L S E N V F E I A S K S L A A - F L R D S Q R M C L K S H R R A W Q L D F Y - G T L R E C V - N R I E E L G S L I F . . . . . . 90846 TATTTTTGGTTTCATTTTTCAGTTATTTGAACCGTGCTCTATTTGTTCCAAAGAGTTTAT Y F W F H F S V I - T V L Y L F Q R V Y I F G F I F Q L F E P C S I C S K E F I I F L V S F F S Y L N R A L F V P K S L . . . . . . 90786 AATTATGTAATGGTTTCAGTAAACATTAAAACTTAGTTACACTTAGTGATATTCATACCT N Y V M V S V N I K T - L H L V I F I P I M - W F Q - T L K L S Y T - - Y S Y L - L C N G F S K H - N L V T L S D I H T . . . . . . 90726 GCGATTTGCATTAGAATTGCGTTGTTCGTAGATATTAATTCCTCCGTTTAAAAAATAATA A I C I R I A L F V D I N S S V - K I I R F A L E L R C S - I L I P P F K K - - C D L H - N C V V R R Y - F L R L K N N . . 90666 ATGACCTAATTTGATTGAC M T - F D - - P N L I D N D L I - L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLe0084H03.1-_PGL-19_AGS-1_PPS_1 (98765 98709,97591 97514,97380 97336,97239 97099,97015 96940,96714 96638,96525 96412,96302 96228,96143 96036,95938 95726,95633 95572,95444 95417,95326 95240,95138 95113,94757 94694,94609 94529,94386 94339,94236 94218,94079 94075,93960 93949,93793 93737,93637 93528,93444 93364,93284 93101,92931 92783,92696 92558,92466 92320,92229 92148,92064 91892,91718 91608,91426 91310,91114 91043,90933 90853) (frame '1'; 2916 bp, 972 residues) 1 QKEFCVLVDQ PFCKSSSIEF QASCRVTSVG RSRDICRYKK YLTSEVAHWR RCQIPRFPLV 61 QPRRIDRRLI CSVATEPLPK EVEESKMEAP KEIFLKDYKQ PDYYFDTLDL KFALGEESTI 121 VASKIAVNPR VEGQSFPLVL DGRDLKLQSV KINGNPLKEE DFHVDSRHLT LKSPPSSKFT 181 LEIVTEIHPQ KNTSLEGLYK SSGNFCTQCE AEGFRKITFY QDRPDIMAKY TCRIEADKSL 241 YPVLLSNGNL IEQGDLEGGK HYTLWEDPFK KPSYLFALVA GQLVSRDDTF TTCSGRKVSL 301 RIWTPAQDLP KTEHAMYSLK AAMKWDEDVF GREYDLDLFN IVAVPDFNMG AMENKSLNIF 361 NSKLVLASPE TATDADYAAI LGVIGHEYFH NWTGNRVTCR DWFQLSLKEG LTVFRDQEFS 421 SDLGSRPVKR IADVSKLRMY QFPQDAGPMA HPVRPHSYIK MDNFYTVTVY EKGAEVVRMY 481 KTLLGSQGFR KGTDLYFERH DGQAVTCEDF FAAMRDANNA DFANFLLWYS QAGTPVVKVT 541 TNYNAEGRTF SLKFSQEVPP TPGQSAKEPM FIPVAVGLLD SSGKDMPLSS VHHDGKLESF 601 ASSGQNVYTT VLRVTKKEEE FVFNDVSERP TPSILRGFSA PIRLESDLTD SDLLFLLAHD 661 SDEFNRWEAG QVLARKLMLS LVADFQQNKA LVLNPQFLQG IKSILTDSSL DKEFIAKAIT 721 LPGIGEIMDM MTVADPDAVH AVRTFIRKQL ASELKQEFLI TAKNNRSSGA YEFDHNNMAR 781 RALKNIALAY LGSLENPEIT ELLLNEYRNA TNMTDQFAAL VAIDQQPAIR EEILADFYNK 841 WQDDYLVVNK WLALQAMSDM PGNVENVKKL LNHTAFDLCN PNKVYSLIGG FCGSPVNFHS 901 KDGSGYKFLG ELVVKLDKMN PQVASRMVSA FSRWKRYDET RQSLAKEQLE MILSTEGLSE 961 NVFEIASKSL AA- AGS-2 (98549 98048,97591 97568) SCR (e 0.996 d 0.971 a 0.864,e 0.958) Exon 1 98549 98048 ( 502 n); score: 0.996 Intron 1 98047 97592 ( 456 n); Pd: 0.971 Pa: 0.864 Exon 2 97591 97568 ( 24 n); score: 0.958 PGS (98523 98048,97591 97568) SGN-E331087+ PGS (98549 98109) SGN-E248529+ 3-phase translation of AGS-2 (-strand): . . . . . . 98549 GGCTTAGTAGTTTGTAGGAGTAGGAATAGTCTTTTCTTGATCTGAGGGGTTTTTGGTTTG G L V V C R S R N S L F L I - G V F G L A - - F V G V G I V F S - S E G F L V W L S S L - E - E - S F L D L R G F W F . . . . . . 98489 GTTTTCCTGAATCAAGTCACTCGTGGTTGGCTTGTAACTTGTAAAGATTGAATCTTTATA V F L N Q V T R G W L V T C K D - I F I F S - I K S L V V G L - L V K I E S L Y G F P E S S H S W L A C N L - R L N L Y . . . . . . 98429 CATTTTTTCATCTGGGGTTGGCTTATATTTTGTGAAGATTGAATCTTTATAGGAATTTTC H F F I W G W L I F C E D - I F I G I F I F S S G V G L Y F V K I E S L - E F S T F F H L G L A Y I L - R L N L Y R N F . . . . . . 98369 ATCTGGGGTTGGCTTATGTTTTGTGAAGATTGGATCTTTATAGGATTTACTACCTGGGGT I W G W L M F C E D W I F I G F T T W G S G V G L C F V K I G S L - D L L P G V H L G L A Y V L - R L D L Y R I Y Y L G . . . . . . 98309 GGCCTTATATTTTGTAAAGATTGAAGCTTTATTGGATTTTTTTAAAATCTGGGGTTGGCT G L I F C K D - S F I G F F - N L G L A A L Y F V K I E A L L D F F K I W G W L W P Y I L - R L K L Y W I F L K S G V G . . . . . . 98249 TATGTTTTGTGTAGAGTTGTATTTGGAATGTTAGATTAGTGAACTATATCTGGGTTTGGC Y V L C R V V F G M L D - - T I S G F G M F C V E L Y L E C - I S E L Y L G L A L C F V - S C I W N V R L V N Y I W V W . . . . . . 98189 TGTGAAGATTGAACCTAACTATTATTATCAACAGTAGATTACTTAGGTGTTGTGTGGTTT C E D - T - L L L S T V D Y L G V V W F V K I E P N Y Y Y Q Q - I T - V L C G L L - R L N L T I I I N S R L L R C C V V . . . . . . 98129 GCCGATGGCTCGGTTGATTCTGCCTTGCAAGGGTTCGAGTTTGTCGAAGACGTGTCTCTT A D G S V D S A L Q G F E F V E D V S L P M A R L I L P C K G S S L S K T C L L C R W L G - F C L A R V R V C R R R V S . . . : . . 98069 GGGTTTGATCTCCAATGCTCCT : TTTCAGGCAAGTTGCCGTGTTACT G F D L Q C S : F S G K L P C Y G L I S N A P : F Q A S C R V T W V - S P M L L : F R Q V A V L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 20 (- strand): 104821 104504 AGS-1 (104821 104504) SCR (e 0.847) Exon 1 104821 104504 ( 318 n); score: 0.847 PGS (104821 104504) SGN-E540411- 3-phase translation of AGS-1 (-strand): . . . . . . 104821 TGTTCTACTCATAATTTATTGGAGGGATAATGCCCAAGTACCGGCTCAATCTATGCTCGA C S T H N L L E G - C P S T G S I Y A R V L L I I Y W R D N A Q V P A Q S M L E F Y S - F I G G I M P K Y R L N L C S . . . . . . 104761 AATTTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCTTTAACTTATTTTATT N F R D T L I L Y - G P I T P L T Y F I I S E T H L Y Y T K V L L P L - L I L L K F Q R H T Y T I L R S Y Y P F N L F Y . . . . . . 104701 AATAATTTTTTACCCCTTTTTAGCTTACGTGGCACTATCTTGTGGGCCCAACGATGGTTG N N F L P L F S L R G T I L W A Q R W L I I F Y P F L A Y V A L S C G P N D G - - - F F T P F - L T W H Y L V G P T M V . . . . . . 104641 ATTTTTTTTCTTCGAACTAGTGCCACGTAGGCTAAAATGGGCAGAAAATTACATATAAAA I F F L R T S A T - A K M G R K L H I K F F F F E L V P R R L K W A E N Y I - N D F F S S N - C H V G - N G Q K I T Y K . . . . . . 104581 TAAGTTCAGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGAGCA - V Q G V I G P - Y S I S V S L G F R A K F R G - - D L S I V - V C L W D F E H I S S G G N R T L V - Y K C V S G I S S . . 104521 TAGGTTGAGGAGTACTTG - V E E Y L R L R S T I G - G V L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 104504 CAAGTACTCCTCAACCTATGCTCGAAATCCCAGAGACACACTTATACTATACTAAGGTCC Q V L L N L C S K S Q R H T Y T I L R S K Y S S T Y A R N P R D T L I L Y - G P S T P Q P M L E I P E T H L Y Y T K V . . . . . . 104564 TATTACCCCCTGAACTTATTTTATATGTAATTTTCTGCCCATTTTAGCCTACGTGGCACT Y Y P L N L F Y M - F S A H F S L R G T I T P - T Y F I C N F L P I L A Y V A L L L P P E L I L Y V I F C P F - P T W H . . . . . . 104624 AGTTCGAAGAAAAAAAATCAACCATCGTTGGGCCCACAAGATAGTGCCACGTAAGCTAAA S S K K K N Q P S L G P Q D S A T - A K V R R K K I N H R W A H K I V P R K L K - F E E K K S T I V G P T R - C H V S - . . . . . . 104684 AAGGGGTAAAAAATTATTAATAAAATAAGTTAAAGGGGTAATAGGACCTTAGTATAGTAT K G - K I I N K I S - R G N R T L V - Y R G K K L L I K - V K G V I G P - Y S I K G V K N Y - - N K L K G - - D L S I V . . . . . . 104744 AAGTGTGTCTCTGAAATTTCGAGCATAGATTGAGCCGGTACTTGGGCATTATCCCTCCAA K C V S E I S S I D - A G T W A L S L Q S V S L K F R A - I E P V L G H Y P S N - V C L - N F E H R L S R Y L G I I P P . . 104804 TAAATTATGAGTAGAACA - I M S R T K L - V E I N Y E - N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 21 (- strand): 113824 113504 AGS-1 (113824 113504) SCR (e 1.000) Exon 1 113824 113504 ( 321 n); score: 1.000 PGS (113824 113504) SGN-E393897- PGS (113824 113545) SGN-E398225+ PGS (113824 113568) SGN-E316137+ PGS (113824 113571) SGN-E238819- PGS (113824 113571) SGN-E238915- PGS (113824 113604) SGN-E315999+ PGS (113824 113669) SGN-E202831+ PGS (113824 113709) SGN-E202510+ 3-phase translation of AGS-1 (-strand): . . . . . . 113824 AGTATTGCGAGAAATACGCTAAGAAAGAAGACGCTGGGGCTCCACCTGAAGAAAAATCTA S I A R N T L R K K T L G L H L K K N L V L R E I R - E R R R W G S T - R K I - Y C E K Y A K K E D A G A P P E E K S . . . . . . 113764 GTGATGAAGAGTTGAGTGAAGAAGAAAATGTCTCCAGTGATGATGAACTTGCTGGAAAAG V M K S - V K K K M S P V M M N L L E K - - R V E - R R K C L Q - - - T C W K S S D E E L S E E E N V S S D D E L A G K . . . . . . 113704 CAGATCCCTAAGGGTTTAGCAGATCATGGACAATATTATAACCCCTTCAATGTTTGTACA Q I P K G L A D H G Q Y Y N P F N V C T R S L R V - Q I M D N I I T P S M F V H A D P - G F S R S W T I L - P L Q C L Y . . . . . . 113644 TGATATCAACTTCTAAACCTGTCTTGTCCATGGTTTACTTGAAGAAAATAGTTCTATTTC - Y Q L L N L S C P W F T - R K - F Y F D I N F - T C L V H G L L E E N S S I S M I S T S K P V L S M V Y L K K I V L F . . . . . . 113584 TTCTGTCAATCTGAATTGTACTGTTATTGTGGTTACATTCTGTCCTGATTCCATAAAAGT F C Q S E L Y C Y C G Y I L S - F H K S S V N L N C T V I V V T F C P D S I K V L L S I - I V L L L W L H S V L I P - K . . . 113524 CCATCTGAACCTTTAAACTTA P S E P L N L H L N L - T S I - T F K L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 113504 TAAGTTTAAAGGTTCAGATGGACTTTTATGGAATCAGGACAGAATGTAACCACAATAACA - V - R F R W T F M E S G Q N V T T I T K F K G S D G L L W N Q D R M - P Q - Q S L K V Q M D F Y G I R T E C N H N N . . . . . . 113564 GTACAATTCAGATTGACAGAAGAAATAGAACTATTTTCTTCAAGTAAACCATGGACAAGA V Q F R L T E E I E L F S S S K P W T R Y N S D - Q K K - N Y F L Q V N H G Q D S T I Q I D R R N R T I F F K - T M D K . . . . . . 113624 CAGGTTTAGAAGTTGATATCATGTACAAACATTGAAGGGGTTATAATATTGTCCATGATC Q V - K L I S C T N I E G V I I L S M I R F R S - Y H V Q T L K G L - Y C P - S T G L E V D I M Y K H - R G Y N I V H D . . . . . . 113684 TGCTAAACCCTTAGGGATCTGCTTTTCCAGCAAGTTCATCATCACTGGAGACATTTTCTT C - T L R D L L F Q Q V H H H W R H F L A K P L G I C F S S K F I I T G D I F F L L N P - G S A F P A S S S S L E T F S . . . . . . 113744 CTTCACTCAACTCTTCATCACTAGATTTTTCTTCAGGTGGAGCCCCAGCGTCTTCTTTCT L H S T L H H - I F L Q V E P Q R L L S F T Q L F I T R F F F R W S P S V F F L S S L N S S S L D F S S G G A P A S S F . . . 113804 TAGCGTATTTCTCGCAATACT - R I S R N T S V F L A I L A Y F S Q Y Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Thu Aug 24 08:30:49 2006