GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 21 22:04:43 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 34829 Total sequence length: 35392868 Minimum sequence length: 63 Maximum sequence length: 5381 Length distribution (number of sequences of specified length): < 100: 4 < 200: 53 < 300: 143 < 400: 353 < 500: 791 < 600: 1674 < 700: 2583 < 800: 4023 < 900: 6481 < 1000: 5706 >=1000: 13018 Input file : /tmp/bac-submission-temp-64ena/C08SLm0006K11/C08SLm0006K11.seq.screen ________________________________________________________________________________ Sequence 1: C08SLm0006K11.1, from 1 to 129852, both strands analyzed. ... started at: Mon Aug 21 22:15:55 2006 EST library file: /tmp/cxgn-bacpublish-resources-TUnTDC/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 21 EST library file: /tmp/cxgn-bacpublish-resources-TUnTDC/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 12 ******************************************************************************** EST sequence 18 +strand 2361 n (File: SGN-U318405+) 1 ATATATATAA ATCTCTCATC ATTTCCAGTT CTTCATAACT GAAAAAGATA AACAGAGGGA 61 TCACATTGTG TTGTACCTGT AGCTTAGTGT ATTCTACGTT GATTACGAAG GAAGAAGCTA 121 TGGCTGCCTG TTCGAGGCGA GGCAATTCTC TCGTCGTGCT AGCGATCGTT TTATTAGGCT 181 GTCTTTCTGC ACTTTCCAAT GCAAAGGAGG AGGCTACAAA ACTTGGTACC GTTATAGGAA 241 TTGATCTTGG GACAACCTAT TCCTGTGTTG GGGTGTACAA GAATGGTCAT GTGGAGATTA 301 TAGCTAATGA CCAAGGAAAC AGGATTACAC CATCATGGGT TGCATTCACT GATAACGAGA 361 GATTGATTGG TGAGGCTGCC AAGAACCTGG CTGCGGTCAA CCCAGAAAGA ACAATCTTTG 421 ATGTTAAGAG GCTGATTGGA AGAAAATTTG AAGATAAGGA AGTACAGAGG GATATGAAGC 481 TGGTACCGTA CAAGATTGTC AGCAAGGATG GAAAGCCCTA CATACAAGTC AAAATCAAGG 541 ATGGAGAAGT TAAGGTATTT AGTCCTGAGG AAATCAGCGC CATGATTTTG ACAAAGATGA 601 AAGAGACAGC CGAAGCATTC CTTGGGAAGA CTATTAAGGA TGCTGTGGTC ACTGTTCCTG 661 CATATTTCAA TGATGCACAA AGACAGGCGA CAAAGGATGC TGGTGTTATT GCTGGATTAA 721 ATGTTGCTAG GATCATTAAT GAGCCAACAG CTGCAGCCAT TGCCTACGGA CTGGATAAGA 781 AAGGTGGTGA GAAGAACATT CTTGTCTTTG ACCTTGGTGG TGGGACATTC GATGTCAGTA 841 TTCTGACCAT TGACAATGGT GTATTTGAGG TTCTTGCAAC AAATGGTGAC ACCCATCTTG 901 GAGGTGAGGA CTTTGATCAA AGGATTATGG AATACTTCAT CAAGTTGATC AAGAAGAAGC 961 ATGGAAAGGA CATCAGCAAG GACAACAGAG CTCTTGGAAA GCTAAGGAGA GAAGCTGAGC 1021 GTGCCAAGAG ATCCCTTAGT AGCCAGCACC AAGTCCGGGT TGAGATTGAA TCATTATTTG 1081 ATGGTACTGA TTTCTCTGAA CCACTGACCC GTGCTCGCTT TGAGGAGTTG AACAATGATC 1141 TCTTCAGAAA GACAATGGGA CCTGTGAAGA AGGCAATGGA TGATGCTGGC CTACAAAAGA 1201 ACCAGATTGA TGAGATTGTT CTTGTTGGTG GAAGCACCAG AATTCCTAAG GTGCAACAGC 1261 TCCTCAAAGA CTATTTTGAC GGGAAGGAGC CCAGCAAGGG TGTAAATCCT GATGAAGCAG 1321 TTGCTTATGG TGCTGCTGTT CAAGGTGGTA TCCTCAGTGG TGAGGGTGGA GATGAAACTA 1381 AAGATATCCT TCTCCTGGAT GTCGCTCCTC TCACCCTTGG TATTGAAACC GTTGGTGGTG 1441 TGATGACCAA ATTGATCCCC AGAAATACCG TTATCCCAAC CAAGAAGTCC CAGGTCTTCA 1501 CCACTTACCA AGACCAGCAG ACCACTGTCT CCATTCAGGT TTTTGAAGGT GAAAGGAGTC 1561 TTACCAAGGA CTGTAGGAAT CTCGGGAAGT TTGATCTTAC AGGAATTCCT CCAGCTCCAA 1621 GGGGAACCCC CCAAATTGAG GTCACATTCG AAGTTGATGC CAATGGTATC TTGAATGTCA 1681 AAGCAGAAGA CAAGGGTACT GGAAAAGCAG AGAAGATTAC CATTACAAAC GACAAGGGCC 1741 GCTTAAGCCA AGAAGAGATT GAGCGTATGG TTCGTGAAGC AGAAGAGTTT GCTGAGGAAG 1801 ACAAGAAAGT GAAGGAGAAG ATTGATGCCC GTAACGCTTT GGAAACCTAC GTGTACAACA 1861 TGAAGAATCA AATCAACGAC AAGGACAAAT TAGCTGACAA ACTCGAGTCT GATGAGAAGG 1921 AGAAGATTGA GACAGCAACG AAAGAAGCCC TTGAATGGTT AGACGATAAC CAGAGCGCCG 1981 AGAAAGAGGA CTATGACGAG AAGCTCAAAG AGGTCGAGGC AGTTTGCAAC CCAATCATCA 2041 CAGCTGTTTA TCAACGATCA GGTGGAGCCC CAGGTGGCGG TGCATCGGAA GAAGAAGATG 2101 ACAGCCATGA TGAGCTGTAA GCTGTTCCAA AGAATCTCCA TTGATACTGC AAAGATGCAG 2161 GAAATGAGGA TATATAGAGT AGTTTGAAGT GAGGGTTAGT GCAAGTTTTG TCATTCGTTC 2221 TGAAAAATCT CTCCCCCCTT CGCTTAGTTT TTTTTAGGTG AAGATTTTAC TAAAGGATGT 2281 TTCCGTTCTT TGAGAACGAC GGCTTGTATG TTGCTTCGAT CTGTTGAATA CAACTTCAGA 2341 ATTTTATTTA GTTAAAAAAA A Predicted gene structure (within gDNA segment 1 to 4662): Exon 1 992 1002 ( 11 n); cDNA 168 178 ( 11 n); score: 0.727 Intron 1 1003 1036 ( 34 n); Pd: 0.587 (s: 0), Pa: 0.983 (s: 0.98) Exon 2 1037 1304 ( 268 n); cDNA 179 445 ( 267 n); score: 0.996 Intron 2 1305 1394 ( 90 n); Pd: 0.945 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 1395 1609 ( 215 n); cDNA 446 660 ( 215 n); score: 1.000 Intron 3 1610 1698 ( 89 n); Pd: 0.999 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 1699 1941 ( 243 n); cDNA 661 903 ( 243 n); score: 1.000 Intron 4 1942 2219 ( 278 n); Pd: 0.988 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 2220 2699 ( 480 n); cDNA 904 1383 ( 480 n); score: 1.000 Intron 5 2700 2804 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 6 2805 2959 ( 155 n); cDNA 1384 1538 ( 155 n); score: 1.000 Intron 6 2960 3075 ( 116 n); Pd: 0.996 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 7 3076 3158 ( 83 n); cDNA 1539 1621 ( 83 n); score: 1.000 Intron 7 3159 3240 ( 82 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 8 3241 3972 ( 732 n); cDNA 1622 2353 ( 732 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-U318405+ 1.000 2187 0.926 C PGS_C08SLm0006K11.1+_SGN-U318405+ (992 1002,1037 1304,1395 1609,1699 1941,2220 2699,2805 2959,3076 3158,3241 3972) Alignment (genomic DNA sequence = upper lines): GTCTGATGAG GGTCATCTGT TATCTTACTC TTTTCCTTGA AACAGGCTGT CTTTCTGCAC 1051 || | || || | |||| |||||||||| GTTTTATTAG G......... .......... .......... .....-CTGT CTTTCTGCAC 192 TTTCCAATGC AAAGGAGGAG GCTACAAAAC TTGGTACCGT TATAGGAATT GATCTTGGGA 1111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAATGC AAAGGAGGAG GCTACAAAAC TTGGTACCGT TATAGGAATT GATCTTGGGA 252 CAACCTATTC CTGTGTTGGG GTGTACAAGA ATGGTCATGT GGAGATTATA GCTAATGACC 1171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCTATTC CTGTGTTGGG GTGTACAAGA ATGGTCATGT GGAGATTATA GCTAATGACC 312 AAGGAAACAG GATTACACCA TCATGGGTTG CATTCACTGA TAACGAGAGA TTGATTGGTG 1231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAACAG GATTACACCA TCATGGGTTG CATTCACTGA TAACGAGAGA TTGATTGGTG 372 AGGCTGCCAA GAACCTGGCT GCGGTCAACC CAGAAAGAAC AATCTTTGAT GTTAAGAGGC 1291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTGCCAA GAACCTGGCT GCGGTCAACC CAGAAAGAAC AATCTTTGAT GTTAAGAGGC 432 TGATTGGAAG AAAGTAATGG ACAATTCTCA ATTAGTTTCA CATGTTTTGT TATGATTGTA 1351 |||||||||| ||| TGATTGGAAG AAA....... .......... .......... .......... .......... 445 TATCTGTCAT GCTAAGAGAT GCTTTATCTT CTTTTTTTTT CAGATTTGAA GATAAGGAAG 1411 ||||||| |||||||||| .......... .......... .......... .......... ...ATTTGAA GATAAGGAAG 462 TACAGAGGGA TATGAAGCTG GTACCGTACA AGATTGTCAG CAAGGATGGA AAGCCCTACA 1471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGAGGGA TATGAAGCTG GTACCGTACA AGATTGTCAG CAAGGATGGA AAGCCCTACA 522 TACAAGTCAA AATCAAGGAT GGAGAAGTTA AGGTATTTAG TCCTGAGGAA ATCAGCGCCA 1531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAGTCAA AATCAAGGAT GGAGAAGTTA AGGTATTTAG TCCTGAGGAA ATCAGCGCCA 582 TGATTTTGAC AAAGATGAAA GAGACAGCCG AAGCATTCCT TGGGAAGACT ATTAAGGATG 1591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTTTGAC AAAGATGAAA GAGACAGCCG AAGCATTCCT TGGGAAGACT ATTAAGGATG 642 CTGTGGTCAC TGTTCCTGGT ATGTTGTTAT CAGGTCCCAA ATGTTCAATT TTTTTGTTTT 1651 |||||||||| |||||||| CTGTGGTCAC TGTTCCTG.. .......... .......... .......... .......... 660 CATTTTTCTT TTCTGTCATT ATTTAGAGAC TTGTCTCGTC TCTGCAGCAT ATTTCAATGA 1711 ||| |||||||||| .......... .......... .......... .......... .......CAT ATTTCAATGA 673 TGCACAAAGA CAGGCGACAA AGGATGCTGG TGTTATTGCT GGATTAAATG TTGCTAGGAT 1771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACAAAGA CAGGCGACAA AGGATGCTGG TGTTATTGCT GGATTAAATG TTGCTAGGAT 733 CATTAATGAG CCAACAGCTG CAGCCATTGC CTACGGACTG GATAAGAAAG GTGGTGAGAA 1831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTAATGAG CCAACAGCTG CAGCCATTGC CTACGGACTG GATAAGAAAG GTGGTGAGAA 793 GAACATTCTT GTCTTTGACC TTGGTGGTGG GACATTCGAT GTCAGTATTC TGACCATTGA 1891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACATTCTT GTCTTTGACC TTGGTGGTGG GACATTCGAT GTCAGTATTC TGACCATTGA 853 CAATGGTGTA TTTGAGGTTC TTGCAACAAA TGGTGACACC CATCTTGGAG GTAAGGATCT 1951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGTGTA TTTGAGGTTC TTGCAACAAA TGGTGACACC CATCTTGGAG .......... 903 ATGGTATAGA AACAACTTAA AGTTGAGCAT GACACATTTT GATACTGCTA ACCATAATGC 2011 .......... .......... .......... .......... .......... .......... 903 TGTTAGGGTG TCCTGATTGT ATTTTCTAAT GGACTTCTCC TCAACTTGAT ATCAACTAAT 2071 .......... .......... .......... .......... .......... .......... 903 GAAATGCTAA AACACTTTTC TATTGATTGC ACATTAGTGG GGTTGCTCTT TTGGGAGGGT 2131 .......... .......... .......... .......... .......... .......... 903 ATTTTATGAT AGCTGAGGAA GATTCAGATG CCATCCTATG AGATAGTTAT TCTTAGATTA 2191 .......... .......... .......... .......... .......... .......... 903 TATTTTGAAT ATCCGATACA TCTTGCAGGT GAGGACTTTG ATCAAAGGAT TATGGAATAC 2251 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT GAGGACTTTG ATCAAAGGAT TATGGAATAC 935 TTCATCAAGT TGATCAAGAA GAAGCATGGA AAGGACATCA GCAAGGACAA CAGAGCTCTT 2311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCAAGT TGATCAAGAA GAAGCATGGA AAGGACATCA GCAAGGACAA CAGAGCTCTT 995 GGAAAGCTAA GGAGAGAAGC TGAGCGTGCC AAGAGATCCC TTAGTAGCCA GCACCAAGTC 2371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAGCTAA GGAGAGAAGC TGAGCGTGCC AAGAGATCCC TTAGTAGCCA GCACCAAGTC 1055 CGGGTTGAGA TTGAATCATT ATTTGATGGT ACTGATTTCT CTGAACCACT GACCCGTGCT 2431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGTTGAGA TTGAATCATT ATTTGATGGT ACTGATTTCT CTGAACCACT GACCCGTGCT 1115 CGCTTTGAGG AGTTGAACAA TGATCTCTTC AGAAAGACAA TGGGACCTGT GAAGAAGGCA 2491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTTTGAGG AGTTGAACAA TGATCTCTTC AGAAAGACAA TGGGACCTGT GAAGAAGGCA 1175 ATGGATGATG CTGGCCTACA AAAGAACCAG ATTGATGAGA TTGTTCTTGT TGGTGGAAGC 2551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATGATG CTGGCCTACA AAAGAACCAG ATTGATGAGA TTGTTCTTGT TGGTGGAAGC 1235 ACCAGAATTC CTAAGGTGCA ACAGCTCCTC AAAGACTATT TTGACGGGAA GGAGCCCAGC 2611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGAATTC CTAAGGTGCA ACAGCTCCTC AAAGACTATT TTGACGGGAA GGAGCCCAGC 1295 AAGGGTGTAA ATCCTGATGA AGCAGTTGCT TATGGTGCTG CTGTTCAAGG TGGTATCCTC 2671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGTGTAA ATCCTGATGA AGCAGTTGCT TATGGTGCTG CTGTTCAAGG TGGTATCCTC 1355 AGTGGTGAGG GTGGAGATGA AACTAAAGGT ACATGATCTA ATTAGTTTTC TTGCCATAAT 2731 |||||||||| |||||||||| |||||||| AGTGGTGAGG GTGGAGATGA AACTAAAG.. .......... .......... .......... 1383 TTGCTTATTG GTTTTGATAA CGTGTGAGTT TGCAGCTTTT GGTGAATGAT TGTGACATGT 2791 .......... .......... .......... .......... .......... .......... 1383 TTCTTGTATG CAGATATCCT TCTCCTGGAT GTCGCTCCTC TCACCCTTGG TATTGAAACC 2851 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...ATATCCT TCTCCTGGAT GTCGCTCCTC TCACCCTTGG TATTGAAACC 1430 GTTGGTGGTG TGATGACCAA ATTGATCCCC AGAAATACCG TTATCCCAAC CAAGAAGTCC 2911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGTGGTG TGATGACCAA ATTGATCCCC AGAAATACCG TTATCCCAAC CAAGAAGTCC 1490 CAGGTCTTCA CCACTTACCA AGACCAGCAG ACCACTGTCT CCATTCAGGT ATTGCTTTGC 2971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAGGTCTTCA CCACTTACCA AGACCAGCAG ACCACTGTCT CCATTCAG.. .......... 1538 TTCATATTTG TGCAATCCTA CAGCTCATTA TCCAGAAATG TTCATTAACC TGTCCTCTGG 3031 .......... .......... .......... .......... .......... .......... 1538 TATGCTCCGA TTCTCACTGT TTTTTCTCCA CATGTTGATT ACAGGTTTTT GAAGGTGAAA 3091 |||||| |||||||||| .......... .......... .......... .......... ....GTTTTT GAAGGTGAAA 1554 GGAGTCTTAC CAAGGACTGT AGGAATCTCG GGAAGTTTGA TCTTACAGGA ATTCCTCCAG 3151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTCTTAC CAAGGACTGT AGGAATCTCG GGAAGTTTGA TCTTACAGGA ATTCCTCCAG 1614 CTCCAAGGTC AGTTACATTT CTTCTCTTTA GATAATTGTA CAAACAACTT TTTGGGATCT 3211 ||||||| CTCCAAG... .......... .......... .......... .......... .......... 1621 GAATTGGAAA CTTGATATTG TTTGAACAGG GGAACCCCCC AAATTGAGGT CACATTCGAA 3271 | |||||||||| |||||||||| |||||||||| .......... .......... .........G GGAACCCCCC AAATTGAGGT CACATTCGAA 1652 GTTGATGCCA ATGGTATCTT GAATGTCAAA GCAGAAGACA AGGGTACTGG AAAAGCAGAG 3331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATGCCA ATGGTATCTT GAATGTCAAA GCAGAAGACA AGGGTACTGG AAAAGCAGAG 1712 AAGATTACCA TTACAAACGA CAAGGGCCGC TTAAGCCAAG AAGAGATTGA GCGTATGGTT 3391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTACCA TTACAAACGA CAAGGGCCGC TTAAGCCAAG AAGAGATTGA GCGTATGGTT 1772 CGTGAAGCAG AAGAGTTTGC TGAGGAAGAC AAGAAAGTGA AGGAGAAGAT TGATGCCCGT 3451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGAAGCAG AAGAGTTTGC TGAGGAAGAC AAGAAAGTGA AGGAGAAGAT TGATGCCCGT 1832 AACGCTTTGG AAACCTACGT GTACAACATG AAGAATCAAA TCAACGACAA GGACAAATTA 3511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGCTTTGG AAACCTACGT GTACAACATG AAGAATCAAA TCAACGACAA GGACAAATTA 1892 GCTGACAAAC TCGAGTCTGA TGAGAAGGAG AAGATTGAGA CAGCAACGAA AGAAGCCCTT 3571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGACAAAC TCGAGTCTGA TGAGAAGGAG AAGATTGAGA CAGCAACGAA AGAAGCCCTT 1952 GAATGGTTAG ACGATAACCA GAGCGCCGAG AAAGAGGACT ATGACGAGAA GCTCAAAGAG 3631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGGTTAG ACGATAACCA GAGCGCCGAG AAAGAGGACT ATGACGAGAA GCTCAAAGAG 2012 GTCGAGGCAG TTTGCAACCC AATCATCACA GCTGTTTATC AACGATCAGG TGGAGCCCCA 3691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGAGGCAG TTTGCAACCC AATCATCACA GCTGTTTATC AACGATCAGG TGGAGCCCCA 2072 GGTGGCGGTG CATCGGAAGA AGAAGATGAC AGCCATGATG AGCTGTAAGC TGTTCCAAAG 3751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGCGGTG CATCGGAAGA AGAAGATGAC AGCCATGATG AGCTGTAAGC TGTTCCAAAG 2132 AATCTCCATT GATACTGCAA AGATGCAGGA AATGAGGATA TATAGAGTAG TTTGAAGTGA 3811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTCCATT GATACTGCAA AGATGCAGGA AATGAGGATA TATAGAGTAG TTTGAAGTGA 2192 GGGTTAGTGC AAGTTTTGTC ATTCGTTCTG AAAAATCTCT CCCCCCTTCG CTTAGTTTTT 3871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTAGTGC AAGTTTTGTC ATTCGTTCTG AAAAATCTCT CCCCCCTTCG CTTAGTTTTT 2252 TTTAGGTGAA GATTTTACTA AAGGATGTTT CCGTTCTTTG AGAACGACGG CTTGTATGTT 3931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGGTGAA GATTTTACTA AAGGATGTTT CCGTTCTTTG AGAACGACGG CTTGTATGTT 2312 GCTTCGATCT GTTGAATACA ACTTCAGAAT TTTATTTAGT T 3972 |||||||||| |||||||||| |||||||||| |||||||||| | GCTTCGATCT GTTGAATACA ACTTCAGAAT TTTATTTAGT T 2353 hqPGS_C08SLm0006K11.1+_SGN-U318405+ (992 1002,1037 1304,1395 1609,1699 1941,2220 2699,2805 2959,3076 3158,3241 3972) ******************************************************************************** EST sequence 9 +strand 2534 n (File: SGN-U315851+) 1 GAAGGCAATT TATGCATGTC CTTTTTCTAC AATATATCAA AAATAAATAC TTAATTGAGA 61 TATTTGGGTA TTTCTCCTTG GCCCTGCTTT GAGGTTTCGC CAGGATTCTC TCACAGAGCC 121 GCCTCACACT GTACCCGCAA CCCGGTCCAC AACCCATTTT CCCTTTCATT CCGGTTCATC 181 TTCTCCATCA CCGGCAGAAG GCGGAAAGTG GAGAACGAAG ATGACTGAAG TCGCGAGCAA 241 CGTTGTACAC GAAATCCTAG GCGGACGAGC TCAAGATGTA GATCAGCCTA TTATCGACTA 301 TATTATCAAT GTCGTCGCCG ATGAAGATTT CGATTTTGGT CACGACGGTG AAGGTGCTTT 361 TGAAGCCCTT GGAGAGCTAC TTGTCGATTC CGGTTGTGTT ACTGACTTCT CCGAATGTCG 421 TGCGGTTTGT AGCAAGTTGT CTGAGAAGTT AGAGAAGCAT GAATTGGCTA AACCCCAACC 481 GACGGTGAGA AGCTTAAAAA TGCCGCTGAG AATGTTTGAT GGAATGGATG AAGAGGAAGC 541 TCCAAAGAAT AAAAAGCCAG AACCAGTTGA TGGTCCTTTG CTCACAGAAC GTGACAAGAT 601 TAAGATTGAA AGAAGGAAGA GGAAAGAGGA ACGCCTGAGA GAGGCAGAAT ACCAAGAACA 661 CTTGAAAGAA GTGGAGGAAG TGAAAGCTGG TATGCCTTTA GTGTGTGTGA ATCATGATGG 721 TCAGGGTGAT GGACCAACTG TTAAGGATAT CCGTATGGAG AACTTCAATA TATCTGTCGG 781 TGGTCGTGAA CTTATTGTCG ATGGTTCTGT CACGCTTTCT TTTGGAAGAC ACTACGGTCT 841 TATTGGAAGA AACGGTACAG GGAAAACAAC TCTCCTGAGG CATATGGCTA TGCACGCTAT 901 TGATGGTATT CCCAGGAACT GCCAGATATT GCATGTTGAG CAAGAAGTGG TTGGTGATAA 961 TACCTCAGTT TTGCAATGTA TTCTTAACAC TGATATGGAG AGAACCCAAC TTCTGGAAGA 1021 AGAGGCTCGT CTGCTTGAAT TACAGAGAGT GACCGACTTA GAAGGCGAAT CTGCAAAGAG 1081 TGATAAGTTG AATGGAGGTA TCGACAAAAA TTCGCAAGCA AAAAGGCTTG AAGAGATATA 1141 CAAAAGACTT GATTTCATTG ATGCTTACTC GGCTGAGTCA CGTGCAGCAA CTATACTATC 1201 GGGTTTGAGC TTCTCTCCAG AAATGCAAAA GAGAGCAACC AAAACATTTT CTGGAGGATG 1261 GAGAATGAGA ATCGCTCTTG CTCGGGCATT GTTCATTGAA CCTGATCTAT TGTTGCTTGA 1321 TGAACCCACG AATCATCTTG ATCTGCATGC TGTCTTATGG CTGGAAAGTT ACCTGGTGAA 1381 GTGGCCGAAG ACATTTATAG TTGTGTCTCA TGCTAGAGAG TTCTTGAATT CTGTAGTCAC 1441 AGATATCATC CATCTACAAA ATCAGAAATT GAGCACCTTT AAAGGAGACT ATGATACATT 1501 TGAAAGGACA CGAGAAGAAC AAGTTAAGAA TCAACAGAAA GCATTCGAGG CAAATGAACG 1561 TACAAGGGCC CACATGCAGA CCTTTATTGA CAAGTTCAGG TACAATGCAA AGCGTGCATC 1621 TCTTGTTCAG TCTAGAATTA AGGCACTGGA ACGAATTGGT CGTGTGGATG AAGTCATCAA 1681 TGATCCTGAC TACAAGTTTG AGTTCCCTTC TCCTGATGAT AGACCTGGCG CTCCTATTAT 1741 AAGCTTCAGT GACGCATCCT TTGGATATCC TGGGGGACCA ATATTGTTCA AAAATTTGAA 1801 TTTTGGAATA GATTTGGATA GCAGAGTAGC AATGGTTGGT CCTAATGGTA TTGGAAAGTC 1861 AACAATACTT AAGCTTATTT CTGGGGAGCT TCAACCAACC TCAGGGACTG TTTTCCGCTC 1921 TGCTAAGGTC CGTATTGCTG TATTTAGTCA GCATCATGTT GATGGGCTGG ATCTGTCCTC 1981 AAATCCCCTC TTATACATGA TGCGTTGCTT TCCAGGAGTG CCTGAACAAA AATTACGTGG 2041 TCATCTAGGT TCATTTGGTA TAACCGGAAA TCTTGCTCTT CAGCCCATGT ACACTTTATC 2101 TGGTGGCCAA AAAAGCAGAG TTGCATTTGC AAAGATAACT TTCAAGAAAC CTCACATATT 2161 GCTTCTTGAT GAGCCGTCAA ATCACTTGGA TCTGGACGCT GTGGAAGCCT TGATACAAGG 2221 TCTTGTCTTG TTCCAAGGAG GCGTCCTGAT GGTCAGTCAC GATGAACATT TAATATCTGG 2281 CAGTGTTGAT CAACTCTGGG CTGTCTCTGA GGGCAGAGTG ACGCCTTTTG ACGGGACATT 2341 CCAAGATTAC AAGAAAATAT TGCAATCATA AACACTTCTG CTGCTTTCTG AAGTGAACGA 2401 ACTATAATTA GTTACTTATG GCCTAAACCC CTACTTTTAT GCAGAGACCA CATGTTCGAT 2461 GTAAAATTTC GAAACCAAAT TCTGAAGAAT GTTCTAAAAC AAATAGTGAT TTTCTACTCC 2521 TAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 20326 to 29867): Exon 1 20936 21358 ( 423 n); cDNA 2 424 ( 423 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 2 22373 22591 ( 219 n); cDNA 425 643 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 22987 23179 ( 193 n); cDNA 644 836 ( 193 n); score: 1.000 Intron 3 23180 24277 (1098 n); Pd: 0.965 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 24278 24486 ( 209 n); cDNA 837 1045 ( 209 n); score: 1.000 Intron 4 24487 24612 ( 126 n); Pd: 0.999 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 5 24613 24768 ( 156 n); cDNA 1046 1201 ( 156 n); score: 1.000 Intron 5 24769 25571 ( 803 n); Pd: 0.870 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 6 25572 25700 ( 129 n); cDNA 1202 1330 ( 129 n); score: 1.000 Intron 6 25701 25807 ( 107 n); Pd: 0.969 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 7 25808 25909 ( 102 n); cDNA 1331 1432 ( 102 n); score: 1.000 Intron 7 25910 26007 ( 98 n); Pd: 0.957 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 8 26008 26154 ( 147 n); cDNA 1433 1579 ( 147 n); score: 1.000 Intron 8 26155 26319 ( 165 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 9 26320 26382 ( 63 n); cDNA 1580 1642 ( 63 n); score: 1.000 Intron 9 26383 26504 ( 122 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 10 26505 26551 ( 47 n); cDNA 1643 1689 ( 47 n); score: 1.000 Intron 10 26552 26716 ( 165 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 11 26717 26776 ( 60 n); cDNA 1690 1749 ( 60 n); score: 1.000 Intron 11 26777 26876 ( 100 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 12 26877 26959 ( 83 n); cDNA 1750 1832 ( 83 n); score: 1.000 Intron 12 26960 27217 ( 258 n); Pd: 0.833 (s: 1.00), Pa: 0.916 (s: 1.00) Exon 13 27218 27312 ( 95 n); cDNA 1833 1927 ( 95 n); score: 1.000 Intron 13 27313 27635 ( 323 n); Pd: 0.999 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 14 27636 27722 ( 87 n); cDNA 1928 2014 ( 87 n); score: 1.000 Intron 14 27723 27951 ( 229 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 15 27952 28039 ( 88 n); cDNA 2015 2102 ( 88 n); score: 1.000 Intron 15 28040 28321 ( 282 n); Pd: 0.995 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 16 28322 28407 ( 86 n); cDNA 2103 2188 ( 86 n); score: 1.000 Intron 16 28408 28703 ( 296 n); Pd: 0.999 (s: 1.00), Pa: 0.785 (s: 1.00) Exon 17 28704 28766 ( 63 n); cDNA 2189 2251 ( 63 n); score: 1.000 Intron 17 28767 28866 ( 100 n); Pd: 0.995 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 18 28867 29137 ( 271 n); cDNA 2252 2522 ( 271 n); score: 1.000 PPA cDNA 2523 2534 MATCH C08SLm0006K11.1+ SGN-U315851+ 1.000 2521 0.995 C PGS_C08SLm0006K11.1+_SGN-U315851+ (20936 21358,22373 22591,22987 23179,24278 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29137) Alignment (genomic DNA sequence = upper lines): AAGGCAATTT ATGCATGTCC TTTTTCTACA ATATATCAAA AATAAATACT TAATTGAGAT 20995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCAATTT ATGCATGTCC TTTTTCTACA ATATATCAAA AATAAATACT TAATTGAGAT 61 ATTTGGGTAT TTCTCCTTGG CCCTGCTTTG AGGTTTCGCC AGGATTCTCT CACAGAGCCG 21055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTAT TTCTCCTTGG CCCTGCTTTG AGGTTTCGCC AGGATTCTCT CACAGAGCCG 121 CCTCACACTG TACCCGCAAC CCGGTCCACA ACCCATTTTC CCTTTCATTC CGGTTCATCT 21115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCACACTG TACCCGCAAC CCGGTCCACA ACCCATTTTC CCTTTCATTC CGGTTCATCT 181 TCTCCATCAC CGGCAGAAGG CGGAAAGTGG AGAACGAAGA TGACTGAAGT CGCGAGCAAC 21175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCATCAC CGGCAGAAGG CGGAAAGTGG AGAACGAAGA TGACTGAAGT CGCGAGCAAC 241 GTTGTACACG AAATCCTAGG CGGACGAGCT CAAGATGTAG ATCAGCCTAT TATCGACTAT 21235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTACACG AAATCCTAGG CGGACGAGCT CAAGATGTAG ATCAGCCTAT TATCGACTAT 301 ATTATCAATG TCGTCGCCGA TGAAGATTTC GATTTTGGTC ACGACGGTGA AGGTGCTTTT 21295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATCAATG TCGTCGCCGA TGAAGATTTC GATTTTGGTC ACGACGGTGA AGGTGCTTTT 361 GAAGCCCTTG GAGAGCTACT TGTCGATTCC GGTTGTGTTA CTGACTTCTC CGAATGTCGT 21355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCCCTTG GAGAGCTACT TGTCGATTCC GGTTGTGTTA CTGACTTCTC CGAATGTCGT 421 GCGGTATTAA TACTTCCATT CCATGCTCAA TTTCGTTATT GCTTAGGCTG AGTTTCATAT 21415 ||| GCG....... .......... .......... .......... .......... .......... 424 TTTTCTGCTC GAAATTTGTT AGATTGAATT GATTCTGAAA GATGTGCTTA TTATACTGTT 21475 .......... .......... .......... .......... .......... .......... 424 AAGATATTTT TCTGCTCGAA ATTTGTTATA TTGAATTGAT TCTGAAAGAT GTGCTTATCA 21535 .......... .......... .......... .......... .......... .......... 424 TACTGTTAAT AGTTTGGATT GTTGACTAGG AACATAATTT ACGAACTAAA TAACATTTTT 21595 .......... .......... .......... .......... .......... .......... 424 GAAACTTGTG GTCTAAATAA GCCATAGACA TTTGTTTGAC TACTATCTAT GAGTGGAAAT 21655 .......... .......... .......... .......... .......... .......... 424 GAGAACTTTA GAGTTAAATA CTTTTTGGAT ATAGGAAAAC TACCATTCTT TTTAGTATTT 21715 .......... .......... .......... .......... .......... .......... 424 TAAGAGTGAA AAGTGAGAAG TTTAAAGTTG AACCTCCAGG CATGACCCAA GCTAGTCTAA 21775 .......... .......... .......... .......... .......... .......... 424 ACAAGGAGAA GAACACAATT CAAAAGTCTT TTCAAGTTAG TCTAAACAAG GAGAAGAACA 21835 .......... .......... .......... .......... .......... .......... 424 TATTCCAAAA GTCTCTTGCT ACTGTAAACA ACGACAGGTT TTGATGAATA AAATTTGGAC 21895 .......... .......... .......... .......... .......... .......... 424 TTAAAAGTTA AGTGATTATT AGCTTCAGTT TATCATTTAT GAAGCAAGGA TTGTGTGATT 21955 .......... .......... .......... .......... .......... .......... 424 TAGTTAGAGA GCTTATGATG GCCTCAAAAG AAAATCATTT GTAAGTGAAT TTGGTCTGAA 22015 .......... .......... .......... .......... .......... .......... 424 ATAGAGAGTG ACCAACACTG TATTGGACTT AGATGTTGTC AGTTGAATTG ATTTGGTAAT 22075 .......... .......... .......... .......... .......... .......... 424 AGCTCATTTA TGATTAGAGG ACTTGTTAAA CCAGAGAAAT AAACAGCCAT TTAAGGGGAC 22135 .......... .......... .......... .......... .......... .......... 424 ATAGAATTCA AATGGGTGAA TAACTCTCAT CATAGAGCAA TTTGTGAACT GAAAAGTTGA 22195 .......... .......... .......... .......... .......... .......... 424 AGTATAATAT GGCGAACAAA AATACAAGTA ATTTCTTAGT ACCAGAATTT ATGGTTATAC 22255 .......... .......... .......... .......... .......... .......... 424 CAGCATTTAC TATTGTGATT GTTAGACTCC TCTATGTTGG TCTTTGTTGC ATGCCGTTGT 22315 .......... .......... .......... .......... .......... .......... 424 GTTTATACAT TGAGTCGTCT GCAATCTATC TTCAGTAGCA TTTTCCAACC ATGACAGGTT 22375 ||| .......... .......... .......... .......... .......... .......GTT 427 TGTAGCAAGT TGTCTGAGAA GTTAGAGAAG CATGAATTGG CTAAACCCCA ACCGACGGTG 22435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCAAGT TGTCTGAGAA GTTAGAGAAG CATGAATTGG CTAAACCCCA ACCGACGGTG 487 AGAAGCTTAA AAATGCCGCT GAGAATGTTT GATGGAATGG ATGAAGAGGA AGCTCCAAAG 22495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTTAA AAATGCCGCT GAGAATGTTT GATGGAATGG ATGAAGAGGA AGCTCCAAAG 547 AATAAAAAGC CAGAACCAGT TGATGGTCCT TTGCTCACAG AACGTGACAA GATTAAGATT 22555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAAAAGC CAGAACCAGT TGATGGTCCT TTGCTCACAG AACGTGACAA GATTAAGATT 607 GAAAGAAGGA AGAGGAAAGA GGAACGCCTG AGAGAGGTGA GTGAAAAAAT GATAATCTTG 22615 |||||||||| |||||||||| |||||||||| |||||| GAAAGAAGGA AGAGGAAAGA GGAACGCCTG AGAGAG.... .......... .......... 643 ATCGTAATCA GAATGAACCT GTTTGACACA AATATTGGTT GTTAAATAAA TATGTTGGGA 22675 .......... .......... .......... .......... .......... .......... 643 AGACTGCTCT TCTTGTCTAT GAACTACACT GATTTGAGTT AACACTTCAC TGAGTTTCCA 22735 .......... .......... .......... .......... .......... .......... 643 TTTATCATTC TAATGGGGTG TGTATGTGTG TGACATTTCA AAATACTCCT TTTGTTGGAT 22795 .......... .......... .......... .......... .......... .......... 643 AATGGTTGTC TTCGTGAAGT TATGAGACAG AATAAATGTA ATCACTTTCC TATTACTGCT 22855 .......... .......... .......... .......... .......... .......... 643 TTAAAAATTG TAACCGGTAA CCCTCTACTT TCTGCCATGT TGATGAAAAG AAGAGGGGAA 22915 .......... .......... .......... .......... .......... .......... 643 AAAAAAAGAA GAAGATGAAA GTGGCTGGTT TACTCCTTCA TTCTTTTAAT CTGTATGGCT 22975 .......... .......... .......... .......... .......... .......... 643 TGATTCTGCA GGCAGAATAC CAAGAACACT TGAAAGAAGT GGAGGAAGTG AAAGCTGGTA 23035 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GCAGAATAC CAAGAACACT TGAAAGAAGT GGAGGAAGTG AAAGCTGGTA 692 TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT AAGGATATCC 23095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTTTAGT GTGTGTGAAT CATGATGGTC AGGGTGATGG ACCAACTGTT AAGGATATCC 752 GTATGGAGAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT GGTTCTGTCA 23155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGGAGAA CTTCAATATA TCTGTCGGTG GTCGTGAACT TATTGTCGAT GGTTCTGTCA 812 CGCTTTCTTT TGGAAGACAC TACGGTATGC TTGATTATCT TATTGAAAAA TAAATGAAAA 23215 |||||||||| |||||||||| |||| CGCTTTCTTT TGGAAGACAC TACG...... .......... .......... .......... 836 CTCATTCCTA TGTACTTTGA TTTTGCATTT TCTTAGACCT TTTAGTATCA AGTAGTTTGT 23275 .......... .......... .......... .......... .......... .......... 836 ATCTCATCGA TATGGTATTA CTCCCTCCTT GCTGATAAGA ACTACCCACT TTTGCAGAGT 23335 .......... .......... .......... .......... .......... .......... 836 CAAATCATGA GTACATGACA TCTATCAACA TGTTAGTATA TAGAAATAAT TCGATTTCTG 23395 .......... .......... .......... .......... .......... .......... 836 TTTAAATTGA TAAAGCTTAT CTAAAAGAAA GTTAAAAATA GTAGTTTGGA ATTTGAGAAG 23455 .......... .......... .......... .......... .......... .......... 836 TTGGGATGTT AGTCGAAAAT TCACATCAGA TTGGATACAA TACGAGATTG ACCCAGTTTA 23515 .......... .......... .......... .......... .......... .......... 836 TATTCATTCA TTTAGAAGTG TTGGGGAGAA AAAATTTCCA TCAAGGGGAG AAGTCAAGAA 23575 .......... .......... .......... .......... .......... .......... 836 TATTGGGTTG GGCTAAAAGG AAAACATGCC ATTTATCAGA GGGTGCGAGT GTCTATCTAT 23635 .......... .......... .......... .......... .......... .......... 836 CTTGATAAGC ATTTAGGGGT CATTTGGTAG GATGTATTAC ATCTCTAATA CATGTACTAG 23695 .......... .......... .......... .......... .......... .......... 836 TCATGGTATT ATTTAATCCT TTATTTGATA GGATTTTCAG CCTGTGTATA ACTAATCTAT 23755 .......... .......... .......... .......... .......... .......... 836 TAGCTATACA CCCTATTCAG TATTATAAGT TGTATAACTA AGACATAGCA AATTATGGTA 23815 .......... .......... .......... .......... .......... .......... 836 TTAGCAATAT GAGGGCTATT AATACATGGA TAAGCATGGT AAAAGACATA GTTGCCCTTA 23875 .......... .......... .......... .......... .......... .......... 836 ATAAACCGAA CCAAACAGTG GATAAGAGAT AATCTCCGTG TTATCAATCC TAGTATTACT 23935 .......... .......... .......... .......... .......... .......... 836 AATACATTCC ATTAATCTAC TCAGTGCTAT TCTTATATAC TCTACCAAAC GACCCCTTAA 23995 .......... .......... .......... .......... .......... .......... 836 TGTCTTAAAC AAGTAAGTCA TCATGCACAC ATCCATTATT TTGTCACTGG GAAGAAGACT 24055 .......... .......... .......... .......... .......... .......... 836 GGAATACATG AATTGGCATA AATGCAAAGG GGGTGAAACT TGGGGGAACA TATTTCGTCA 24115 .......... .......... .......... .......... .......... .......... 836 AACAACAACA TAGGCTATAG CCAGTGTATA TTGGCATTTT TTGCTGTTTA TTTATTAATT 24175 .......... .......... .......... .......... .......... .......... 836 AAATTGATGA CTTTCTCAAA AAAAAAAACA TAGCCTATAG CCAGCGGCGT AGTTATGTTT 24235 .......... .......... .......... .......... .......... .......... 836 TATGAATCCA CGGCCTTACC TAAATCTCTA ATTTGGATGC AGGTCTTATT GGAAGAAACG 24295 |||||||| |||||||||| .......... .......... .......... .......... ..GTCTTATT GGAAGAAACG 854 GTACAGGGAA AACAACTCTC CTGAGGCATA TGGCTATGCA CGCTATTGAT GGTATTCCCA 24355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAGGGAA AACAACTCTC CTGAGGCATA TGGCTATGCA CGCTATTGAT GGTATTCCCA 914 GGAACTGCCA GATATTGCAT GTTGAGCAAG AAGTGGTTGG TGATAATACC TCAGTTTTGC 24415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACTGCCA GATATTGCAT GTTGAGCAAG AAGTGGTTGG TGATAATACC TCAGTTTTGC 974 AATGTATTCT TAACACTGAT ATGGAGAGAA CCCAACTTCT GGAAGAAGAG GCTCGTCTGC 24475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTATTCT TAACACTGAT ATGGAGAGAA CCCAACTTCT GGAAGAAGAG GCTCGTCTGC 1034 TTGAATTACA GGTTAGAAAC AGATCAATGG CTAAGCTTTT ATGTCATATT ATACTGTTTA 24535 |||||||||| | TTGAATTACA G......... .......... .......... .......... .......... 1045 TTTTTAATAT ACCTTCGTAT TTTGTTCTCA TTGGATCAAG TATATTCCCA TTCCTTGGCA 24595 .......... .......... .......... .......... .......... .......... 1045 TTTTCATGAT TTTCTAGAGA GTGACCGACT TAGAAGGCGA ATCTGCAAAG AGTGATAAGT 24655 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......AGA GTGACCGACT TAGAAGGCGA ATCTGCAAAG AGTGATAAGT 1088 TGAATGGAGG TATCGACAAA AATTCGCAAG CAAAAAGGCT TGAAGAGATA TACAAAAGAC 24715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATGGAGG TATCGACAAA AATTCGCAAG CAAAAAGGCT TGAAGAGATA TACAAAAGAC 1148 TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCAGC AACTATACTA TCGGTTAGTT 24775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCAGC AACTATACTA TCG....... 1201 TGACTTTGAC TAGTAATCCG ATTTGCAAGC TTATGATGAC ATCAGTCTCT CTGTAACTGT 24835 .......... .......... .......... .......... .......... .......... 1201 TGAGAAAGTT TGTTCACTTT ATATATCTTC TTGATGCTCT TTTTACTGAA ACCACTTTCT 24895 .......... .......... .......... .......... .......... .......... 1201 TCATAAAAAT AAAGTTTATT CACTTTATAC ACTATGTTTA ACTAAAACAG AGTTTGCATT 24955 .......... .......... .......... .......... .......... .......... 1201 TGATTTATAA TATCGCACAC AAATGCTGTA CGTTAGAGTT TAATTTATAA TGTATGAGCA 25015 .......... .......... .......... .......... .......... .......... 1201 AGATTCAGTC TACTAATTCA TGTACCTGGG ATGCCTGTTC CTTTCCTTCT GTTTCTACCA 25075 .......... .......... .......... .......... .......... .......... 1201 TGATTATGCT TCCGCCTACT TTGTCTTAGG AATGTGTTTT GGATATGGCT TGAAAGTATG 25135 .......... .......... .......... .......... .......... .......... 1201 GAAGCTAGTC TCAAGCTAAT CTTGCTGTTT TTGCCTCTTC TTAGAGTTTG AGTTGTCTAA 25195 .......... .......... .......... .......... .......... .......... 1201 GCTTCTGTCC TAACTTCATG TTATCCGAAC TATCTTGCTG TTTTGGCCTC TCCTTGGAGT 25255 .......... .......... .......... .......... .......... .......... 1201 TTAAGTTGTA TGTTGAGATT ATTTCCCTTA TAATTTAATG TTGTCTTGTC GTTTTAAGCT 25315 .......... .......... .......... .......... .......... .......... 1201 GTGGATCTGT GTACTAACAT CTTAAATAGG AAGTTTTGAA TGGGGGAATA TGCTAGAAGT 25375 .......... .......... .......... .......... .......... .......... 1201 TAATCTATCT CTGGCAATTG AAAGTTAGAA CTCCTTTATT TAAGAGGCTG GGTTTTATTC 25435 .......... .......... .......... .......... .......... .......... 1201 TGCTGTAGTT TTGGCGTTCT TCAAGTTGGA TGCTTGTCCA CCTCAATTTT TCTTATGATG 25495 .......... .......... .......... .......... .......... .......... 1201 TTTTGCCTAT TGATCATTTG TGTTCACACC ATTTGTAATG TATAGTCTAG TTCTCATTGG 25555 .......... .......... .......... .......... .......... .......... 1201 TGGCTATTAC TTCCAGGGTT TGAGCTTCTC TCCAGAAATG CAAAAGAGAG CAACCAAAAC 25615 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GGTT TGAGCTTCTC TCCAGAAATG CAAAAGAGAG CAACCAAAAC 1245 ATTTTCTGGA GGATGGAGAA TGAGAATCGC TCTTGCTCGG GCATTGTTCA TTGAACCTGA 25675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTCTGGA GGATGGAGAA TGAGAATCGC TCTTGCTCGG GCATTGTTCA TTGAACCTGA 1305 TCTATTGTTG CTTGATGAAC CCACGGTGTG TTATTTCTTC TCGAGGATGT AGATGTACAG 25735 |||||||||| |||||||||| ||||| TCTATTGTTG CTTGATGAAC CCACG..... .......... .......... .......... 1330 CTATTCAAAT AATGAACTTC TGTTTTCTTT TGCATGAAGA AATCATAGAA CTTATGTTTT 25795 .......... .......... .......... .......... .......... .......... 1330 CCTTCCTTGC AGAATCATCT TGATCTGCAT GCTGTCTTAT GGCTGGAAAG TTACCTGGTG 25855 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..AATCATCT TGATCTGCAT GCTGTCTTAT GGCTGGAAAG TTACCTGGTG 1378 AAGTGGCCGA AGACATTTAT AGTTGTGTCT CATGCTAGAG AGTTCTTGAA TTCTGTACGT 25915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AAGTGGCCGA AGACATTTAT AGTTGTGTCT CATGCTAGAG AGTTCTTGAA TTCT...... 1432 CCTTTCTTCT CTTTGACCTA AAACAATAGT TGGGTTCAGT ATGTTGATGT TTGTTTGACA 25975 .......... .......... .......... .......... .......... .......... 1432 TCTCATAAAC CTATCTTTGC TTCTTTCTTC AGGTAGTCAC AGATATCATC CATCTACAAA 26035 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTAGTCAC AGATATCATC CATCTACAAA 1460 ATCAGAAATT GAGCACCTTT AAAGGAGACT ATGATACATT TGAAAGGACA CGAGAAGAAC 26095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGAAATT GAGCACCTTT AAAGGAGACT ATGATACATT TGAAAGGACA CGAGAAGAAC 1520 AAGTTAAGAA TCAACAGAAA GCATTCGAGG CAAATGAACG TACAAGGGCC CACATGCAGG 26155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGTTAAGAA TCAACAGAAA GCATTCGAGG CAAATGAACG TACAAGGGCC CACATGCAG. 1579 TCTTTCCCAA TTATATTTAC CTTTTTTTTT TTGAGATGAT AACTTTAATT ACATTCACTT 26215 .......... .......... .......... .......... .......... .......... 1579 TATTGGTAGA CTATTGCAAA CAGATTATTT GCGACCTTAT TTGCAGATTT CTTGTCTCGC 26275 .......... .......... .......... .......... .......... .......... 1579 TGTTTAATGC TTTGATACAT TTTTTTGGCT ATAATGCTGT GCAGACCTTT ATTGACAAGT 26335 |||||| |||||||||| .......... .......... .......... .......... ....ACCTTT ATTGACAAGT 1595 TCAGGTACAA TGCAAAGCGT GCATCTCTTG TTCAGTCTAG AATTAAGGTA TGCATTCATT 26395 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCAGGTACAA TGCAAAGCGT GCATCTCTTG TTCAGTCTAG AATTAAG... .......... 1642 GCTGCTCCTA TATATCTTGA TCCAATTGTT TAATAATTTA ATTAGGTCCA CTTTTGATTC 26455 .......... .......... .......... .......... .......... .......... 1642 CCTAGCATGC CATGATCAGT ACCTGAATCG TTTTCCTTGA ATTTGACAGG CACTGGAACG 26515 | |||||||||| .......... .......... .......... .......... .........G CACTGGAACG 1653 AATTGGTCGT GTGGATGAAG TCATCAATGA TCCTGAGTAC GCATTCATTC CTTTAACACA 26575 |||||||||| |||||||||| |||||||||| |||||| AATTGGTCGT GTGGATGAAG TCATCAATGA TCCTGA.... .......... .......... 1689 TTGCTCCTAT ATGTTTGTGT ATTTTAACTC TCTTATGATG TTTAACTTGT TATAACCTGC 26635 .......... .......... .......... .......... .......... .......... 1689 ATCGATAAAA TTCCGATTTC TGTCATGTTG CATTTTTATA ATTAAATGAA CTCATTGTTA 26695 .......... .......... .......... .......... .......... .......... 1689 TTTTGCATAT GATATATGCA GCTACAAGTT TGAGTTCCCT TCTCCTGATG ATAGACCTGG 26755 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CTACAAGTT TGAGTTCCCT TCTCCTGATG ATAGACCTGG 1728 CGCTCCTATT ATAAGCTTCA GGTTAAACAT CTCTTAGTCT GTGGCTAAGA CATTCTTGTG 26815 |||||||||| |||||||||| | CGCTCCTATT ATAAGCTTCA G......... .......... .......... .......... 1749 ATCTCTTGTC AGACAGCAAA TCTCAGCTAA TTAACTTCTT ACCTTATTGT AACTAATGCA 26875 .......... .......... .......... .......... .......... .......... 1749 GTGACGCATC CTTTGGATAT CCTGGGGGAC CAATATTGTT CAAAAATTTG AATTTTGGAA 26935 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TGACGCATC CTTTGGATAT CCTGGGGGAC CAATATTGTT CAAAAATTTG AATTTTGGAA 1808 TAGATTTGGA TAGCAGAGTA GCAAGTAAGA CCTTTATTGT CTACCAATCA AGTATTTTCA 26995 |||||||||| |||||||||| |||| TAGATTTGGA TAGCAGAGTA GCAA...... .......... .......... .......... 1832 AGTTCACTTA ACTGGTGCAA ACCTTTGTAA ACTGTACGTA TGGGTCAGTA ATATGTCTCT 27055 .......... .......... .......... .......... .......... .......... 1832 CTGCATTGAC GTTGAGTTTT TCTGTTGGGA AGTAAAATTA GATCTCTTTA TTTGTGAGTT 27115 .......... .......... .......... .......... .......... .......... 1832 AGGTAGTATG TGGTTTTGGC ATGTGTATTT TTATAATTGT TTTTTAATCA TTTTTACTGT 27175 .......... .......... .......... .......... .......... .......... 1832 TTTACATATC ATGGACCTTG TCTCACCTTA TGTATTTTCC AGTGGTTGGT CCTAATGGTA 27235 |||||||| |||||||||| .......... .......... .......... .......... ..TGGTTGGT CCTAATGGTA 1850 TTGGAAAGTC AACAATACTT AAGCTTATTT CTGGGGAGCT TCAACCAACC TCAGGGACTG 27295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAAAGTC AACAATACTT AAGCTTATTT CTGGGGAGCT TCAACCAACC TCAGGGACTG 1910 TTTTCCGCTC TGCTAAGGTA AACTTTATTT GGCAAAAACT TACGAGATTT TGTGGGTTTT 27355 |||||||||| ||||||| TTTTCCGCTC TGCTAAG... .......... .......... .......... .......... 1927 TTTTTATAAA AAAAAAATCA CTTCCAATGT CTACTAGTTC TGTCCTTCAC ACCATATATC 27415 .......... .......... .......... .......... .......... .......... 1927 AATATTGTTC TGGTCAATTT GTGTTTCAGC CGTACGTTCT CTCATTGCAA TTCCTGTCAC 27475 .......... .......... .......... .......... .......... .......... 1927 CTTTTAGTTA TTAAAAGTCT ATAGACTAAT GATTCTGTAT GAGCAAATGC TAGTGGTGTT 27535 .......... .......... .......... .......... .......... .......... 1927 CTTTTGACCT TATAATTATT TGTGCAGGCA AATGTTTCAT TTTGCTCTAT TCAGTTACTT 27595 .......... .......... .......... .......... .......... .......... 1927 GATCTTAATG CATTCTAAAT GCTCTTCACT TTTTGTTTAG GTCCGTATTG CTGTATTTAG 27655 |||||||||| |||||||||| .......... .......... .......... .......... GTCCGTATTG CTGTATTTAG 1947 TCAGCATCAT GTTGATGGGC TGGATCTGTC CTCAAATCCC CTCTTATACA TGATGCGTTG 27715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCATCAT GTTGATGGGC TGGATCTGTC CTCAAATCCC CTCTTATACA TGATGCGTTG 2007 CTTTCCAGTA AGTTCTCCTA ATCAATGATG TATTTTCTTG TAAATTCTAA AATGTATGTG 27775 ||||||| CTTTCCA... .......... .......... .......... .......... .......... 2014 TAATAAGTTC TCTCTAAAGA AGGTGGGTCA ACAGTTGATT TTTCTGAATT TATTTGTGTC 27835 .......... .......... .......... .......... .......... .......... 2014 CGAACTCCTG ATAAGACATT TTTAAAGGTT TAATTGCTCC CTTACATCTC ATATTGCCAA 27895 .......... .......... .......... .......... .......... .......... 2014 AGTGAATCTG CAAGTCATCT TTTTTAATGT ATTGACCTTG CTCTGGCTTC CTGCAGGGAG 27955 |||| .......... .......... .......... .......... .......... ......GGAG 2018 TGCCTGAACA AAAATTACGT GGTCATCTAG GTTCATTTGG TATAACCGGA AATCTTGCTC 28015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTGAACA AAAATTACGT GGTCATCTAG GTTCATTTGG TATAACCGGA AATCTTGCTC 2078 TTCAGCCCAT GTACACTTTA TCTGGTATGT TAGCATTCTA CTTGTGTTTT TTTTTTTGAT 28075 |||||||||| |||||||||| |||| TTCAGCCCAT GTACACTTTA TCTG...... .......... .......... .......... 2102 AAAGTAAATA AATGATATTA GGAAGCATCA AGAAGATGCA AAGTCACAAA ACACTATGTG 28135 .......... .......... .......... .......... .......... .......... 2102 CTAGAAAGCT GCTCCAAACA GCAATATATG GAGCTAGCTT GGCAAAAACT ACTCTACTGT 28195 .......... .......... .......... .......... .......... .......... 2102 ACTAGAGATA TACTTGTGTT CTTGTTTAGA TTACAATGAT TCAGTTCCGC CTTCTGTCAC 28255 .......... .......... .......... .......... .......... .......... 2102 TTGGGGTCAA GAGTTGTGGC ATAATAACTT ATAGTCCACA TTTTGGATTG ATCTATGGGA 28315 .......... .......... .......... .......... .......... .......... 2102 TCTCAGGTGG CCAAAAAAGC AGAGTTGCAT TTGCAAAGAT AACTTTCAAG AAACCTCACA 28375 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTGG CCAAAAAAGC AGAGTTGCAT TTGCAAAGAT AACTTTCAAG AAACCTCACA 2156 TATTGCTTCT TGATGAGCCG TCAAATCACT TGGTAAGTTG AATTCTACTT GTTTTAGTTT 28435 |||||||||| |||||||||| |||||||||| || TATTGCTTCT TGATGAGCCG TCAAATCACT TG........ .......... .......... 2188 CTTATTCACC ATCTTTTCTT CATACATCCG TGATTTTCAT GTCTTCTTGT TGCCGAATAA 28495 .......... .......... .......... .......... .......... .......... 2188 CATACTTGGT CGGAGTAAAA AGTGGAACAT AGAATGCCCG AAAAAAAACT GGCGCGTTTG 28555 .......... .......... .......... .......... .......... .......... 2188 TGGGTTTTAG GAAGGGCCTG GTGTGGTTTC ATGATTTTTT CTTGATGGCA TTTAATTTCA 28615 .......... .......... .......... .......... .......... .......... 2188 ACAGCTAAAG CAAAGGATGT ACTTAGTGCT TCATTTATCC AAAGCTTCTT GCATATGCAA 28675 .......... .......... .......... .......... .......... .......... 2188 TGGCATTATC TAATCGAGTT CTATGCAGGA TCTGGACGCT GTGGAAGCCT TGATACAAGG 28735 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA TCTGGACGCT GTGGAAGCCT TGATACAAGG 2220 TCTTGTCTTG TTCCAAGGAG GCGTCCTGAT GGTACTATAA AACTTCTGTC AATTATTTTT 28795 |||||||||| |||||||||| |||||||||| | TCTTGTCTTG TTCCAAGGAG GCGTCCTGAT G......... .......... .......... 2251 TTGGCTAAAT GGTAGCATGT TTTTGGTTTT GCTGGTGTTT AATGGGAGCT GCTACGTGAT 28855 .......... .......... .......... .......... .......... .......... 2251 GTTATTTACA GGTCAGTCAC GATGAACATT TAATATCTGG CAGTGTTGAT CAACTCTGGG 28915 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTCAGTCAC GATGAACATT TAATATCTGG CAGTGTTGAT CAACTCTGGG 2300 CTGTCTCTGA GGGCAGAGTG ACGCCTTTTG ACGGGACATT CCAAGATTAC AAGAAAATAT 28975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTCTGA GGGCAGAGTG ACGCCTTTTG ACGGGACATT CCAAGATTAC AAGAAAATAT 2360 TGCAATCATA AACACTTCTG CTGCTTTCTG AAGTGAACGA ACTATAATTA GTTACTTATG 29035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAATCATA AACACTTCTG CTGCTTTCTG AAGTGAACGA ACTATAATTA GTTACTTATG 2420 GCCTAAACCC CTACTTTTAT GCAGAGACCA CATGTTCGAT GTAAAATTTC GAAACCAAAT 29095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTAAACCC CTACTTTTAT GCAGAGACCA CATGTTCGAT GTAAAATTTC GAAACCAAAT 2480 TCTGAAGAAT GTTCTAAAAC AAATAGTGAT TTTCTACTCC TA 29137 |||||||||| |||||||||| |||||||||| |||||||||| || TCTGAAGAAT GTTCTAAAAC AAATAGTGAT TTTCTACTCC TA 2522 hqPGS_C08SLm0006K11.1+_SGN-U315851+ (20936 21358,22373 22591,22987 23179,24278 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29137) ******************************************************************************** EST sequence 6 +strand 1207 n (File: SGN-U335354+) 1 NAAAACGACT CCGCGGGCGG CGCTCAGACT AGTGGATCCC CCGGGCTGCA GGAATTCGGC 61 ACGACGGTAT TCCCAGGAAC TGCCATATAT TGCATGATGA ACAAGAAGTG GTTGGTGATA 121 ATACCTCAGC TGTGCAATGT ATTCTTAACA CTGAGATGGA GAGAGCCCCA CTTCTGGAAC 181 AAGAGGCTCG TCTGCTTGAA TTACAGACAG TGACCGACTT AGAAGGCTAA TCTGCAAACA 241 GCGATACGTT GAATGGAGGT ATCGACAAGA ATTCGCAAGC AAAAAGGCTT GAAAAGATAT 301 ACACAAGACT TGATTTCATT GATGCTTACT CGGCTGAGTC ACGTGCACCA ACTATACTAT 361 CGGGGTTGAG CTTCTCTCCA CAGATGCTAA ACAGAGCAAC CCTCACATTT TCTGGAGGAT 421 GGACAATGAG AATCGCTCTT GCTCGGGCAT TGTTCATTGA ACCTGATCTA TTGTTGCTTG 481 ATGAACCCAC GAATCATCTT GATCTGCATG CTGTCTTATG GCTGGAAAGA TACCTGGCGA 541 AGTGGCCGAA GACATTTATA GTTGCGTCTC ATGCTACATA GTTCTTGAAT TCTGCATTCA 601 CGGATATCAT CCGTCTACAA TATCACAAAT TGAGCACCTA TGGAGGATAC TATGATACAT 661 TTGAGAGGAC ACTAGAATAA CCAGTGAACA ATCCACAGAC AGCATTCGAG GCAAATGAAC 721 GTACAAGGGC CCACATGCAG ACCTTTATTG ACAAGTTCAC GTACAATGCC TAGCGTGCAT 781 CTCTTGTTCA GTCTAGAATT AATGCACTGA AACGAGTTGC TCCTGTGGAT GAAATCATCA 841 ATGATCCTGA CTACGACTTT GAGTTCCCAT CTCCTGATGA TAGACCTGGC GCTCCTATTA 901 TAATCTTCAC TGACACATCA TTTGGATATC CTGAGGGACT AATATTGCTC CAAAATTTGA 961 ATTTTGAAGT AGATTTGGAT ATCCAAGTAA CCATGGTTGC GCCTAATGGA ATTGGGAAAG 1021 TCAACAAAAC TTAAACCTTA TTTCGGGAGG ACCTCAACCC AACCTCAGGG AACGTTTTCG 1081 GCTCCGGCAA GGCCCGAATT GCTGGATTAA AACAACATCA TTTTGATGGG CGGGAACTGT 1141 CCCCAATCCC CCCCAATACA GAACGCCTTG CCTCCCGGGA TGCCCCGAAC AAAATTCCGG 1201 GGAAACC Predicted gene structure (within gDNA segment 23096 to 30419): Exon 1 24346 24486 ( 141 n); cDNA 66 206 ( 141 n); score: 0.936 Intron 1 24487 24612 ( 126 n); Pd: 0.999 (s: 0.94), Pa: 0.987 (s: 0.90) Exon 2 24613 24768 ( 156 n); cDNA 207 362 ( 156 n); score: 0.942 Intron 2 24769 25571 ( 803 n); Pd: 0.870 (s: 0.98), Pa: 0.993 (s: 0.84) Exon 3 25572 25700 ( 129 n); cDNA 363 491 ( 129 n); score: 0.930 Intron 3 25701 25807 ( 107 n); Pd: 0.969 (s: 1.00), Pa: 0.991 (s: 0.96) Exon 4 25808 25909 ( 102 n); cDNA 492 593 ( 102 n); score: 0.951 Intron 4 25910 26007 ( 98 n); Pd: 0.957 (s: 0.94), Pa: 0.995 (s: 0.82) Exon 5 26008 26154 ( 147 n); cDNA 594 740 ( 147 n); score: 0.878 Intron 5 26155 26319 ( 165 n); Pd: 1.000 (s: 0.96), Pa: 0.987 (s: 0.94) Exon 6 26320 26382 ( 63 n); cDNA 741 803 ( 63 n); score: 0.937 Intron 6 26383 26504 ( 122 n); Pd: 0.999 (s: 0.92), Pa: 0.997 (s: 0.89) Exon 7 26505 26551 ( 47 n); cDNA 804 850 ( 47 n); score: 0.894 Intron 7 26552 26716 ( 165 n); Pd: 0.999 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 8 26717 26776 ( 60 n); cDNA 851 910 ( 60 n); score: 0.917 Intron 8 26777 26876 ( 100 n); Pd: 0.978 (s: 0.94), Pa: 0.979 (s: 0.88) Exon 9 26877 26959 ( 83 n); cDNA 911 993 ( 83 n); score: 0.843 Intron 9 26960 27217 ( 258 n); Pd: 0.833 (s: 0.82), Pa: 0.916 (s: 0.79) Exon 10 27218 27312 ( 95 n); cDNA 994 1091 ( 98 n); score: 0.753 Intron 10 27313 27635 ( 323 n); Pd: 0.999 (s: 0.72), Pa: 0.993 (s: 0.80) Exon 11 27636 27722 ( 87 n); cDNA 1092 1177 ( 86 n); score: 0.747 Intron 11 27723 27951 ( 229 n); Pd: 0.999 (s: 0.72), Pa: 0.996 (s: 0) Exon 12 27952 27977 ( 26 n); cDNA 1178 1202 ( 25 n); score: 0.731 MATCH C08SLm0006K11.1+ SGN-U335354+ 0.889 1136 0.941 C PGS_C08SLm0006K11.1+_SGN-U335354+ (24346 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 27977) Alignment (genomic DNA sequence = upper lines): GGTATTCCCA GGAACTGCCA GATATTGCAT GTTGAGCAAG AAGTGGTTGG TGATAATACC 24405 |||||||||| |||||||||| ||||||||| | ||| |||| |||||||||| |||||||||| GGTATTCCCA GGAACTGCCA TATATTGCAT GATGAACAAG AAGTGGTTGG TGATAATACC 125 TCAGTTTTGC AATGTATTCT TAACACTGAT ATGGAGAGAA CCCAACTTCT GGAAGAAGAG 24465 |||| | ||| |||||||||| ||||||||| ||||||||| ||| |||||| |||| ||||| TCAGCTGTGC AATGTATTCT TAACACTGAG ATGGAGAGAG CCCCACTTCT GGAACAAGAG 185 GCTCGTCTGC TTGAATTACA GGTTAGAAAC AGATCAATGG CTAAGCTTTT ATGTCATATT 24525 |||||||||| |||||||||| | GCTCGTCTGC TTGAATTACA G......... .......... .......... .......... 206 ATACTGTTTA TTTTTAATAT ACCTTCGTAT TTTGTTCTCA TTGGATCAAG TATATTCCCA 24585 .......... .......... .......... .......... .......... .......... 206 TTCCTTGGCA TTTTCATGAT TTTCTAGAGA GTGACCGACT TAGAAGGCGA ATCTGCAAAG 24645 | | |||||||||| |||||||| | ||||||||| .......... .......... .......ACA GTGACCGACT TAGAAGGCTA ATCTGCAAAC 239 AGTGATAAGT TGAATGGAGG TATCGACAAA AATTCGCAAG CAAAAAGGCT TGAAGAGATA 24705 || |||| || |||||||||| ||||||||| |||||||||| |||||||||| |||| ||||| AGCGATACGT TGAATGGAGG TATCGACAAG AATTCGCAAG CAAAAAGGCT TGAAAAGATA 299 TACAAAAGAC TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCAGC AACTATACTA 24765 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TACACAAGAC TTGATTTCAT TGATGCTTAC TCGGCTGAGT CACGTGCACC AACTATACTA 359 TCGGTTAGTT TGACTTTGAC TAGTAATCCG ATTTGCAAGC TTATGATGAC ATCAGTCTCT 24825 ||| TCG....... .......... .......... .......... .......... .......... 362 CTGTAACTGT TGAGAAAGTT TGTTCACTTT ATATATCTTC TTGATGCTCT TTTTACTGAA 24885 .......... .......... .......... .......... .......... .......... 362 ACCACTTTCT TCATAAAAAT AAAGTTTATT CACTTTATAC ACTATGTTTA ACTAAAACAG 24945 .......... .......... .......... .......... .......... .......... 362 AGTTTGCATT TGATTTATAA TATCGCACAC AAATGCTGTA CGTTAGAGTT TAATTTATAA 25005 .......... .......... .......... .......... .......... .......... 362 TGTATGAGCA AGATTCAGTC TACTAATTCA TGTACCTGGG ATGCCTGTTC CTTTCCTTCT 25065 .......... .......... .......... .......... .......... .......... 362 GTTTCTACCA TGATTATGCT TCCGCCTACT TTGTCTTAGG AATGTGTTTT GGATATGGCT 25125 .......... .......... .......... .......... .......... .......... 362 TGAAAGTATG GAAGCTAGTC TCAAGCTAAT CTTGCTGTTT TTGCCTCTTC TTAGAGTTTG 25185 .......... .......... .......... .......... .......... .......... 362 AGTTGTCTAA GCTTCTGTCC TAACTTCATG TTATCCGAAC TATCTTGCTG TTTTGGCCTC 25245 .......... .......... .......... .......... .......... .......... 362 TCCTTGGAGT TTAAGTTGTA TGTTGAGATT ATTTCCCTTA TAATTTAATG TTGTCTTGTC 25305 .......... .......... .......... .......... .......... .......... 362 GTTTTAAGCT GTGGATCTGT GTACTAACAT CTTAAATAGG AAGTTTTGAA TGGGGGAATA 25365 .......... .......... .......... .......... .......... .......... 362 TGCTAGAAGT TAATCTATCT CTGGCAATTG AAAGTTAGAA CTCCTTTATT TAAGAGGCTG 25425 .......... .......... .......... .......... .......... .......... 362 GGTTTTATTC TGCTGTAGTT TTGGCGTTCT TCAAGTTGGA TGCTTGTCCA CCTCAATTTT 25485 .......... .......... .......... .......... .......... .......... 362 TCTTATGATG TTTTGCCTAT TGATCATTTG TGTTCACACC ATTTGTAATG TATAGTCTAG 25545 .......... .......... .......... .......... .......... .......... 362 TTCTCATTGG TGGCTATTAC TTCCAGGGTT TGAGCTTCTC TCCAGAAATG CAAAAGAGAG 25605 || | |||||||||| |||| | ||| | ||| |||| .......... .......... ......GGGT TGAGCTTCTC TCCACAGATG CTAAACAGAG 396 CAACCAAAAC ATTTTCTGGA GGATGGAGAA TGAGAATCGC TCTTGCTCGG GCATTGTTCA 25665 ||||| || |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| CAACCCTCAC ATTTTCTGGA GGATGGACAA TGAGAATCGC TCTTGCTCGG GCATTGTTCA 456 TTGAACCTGA TCTATTGTTG CTTGATGAAC CCACGGTGTG TTATTTCTTC TCGAGGATGT 25725 |||||||||| |||||||||| |||||||||| ||||| TTGAACCTGA TCTATTGTTG CTTGATGAAC CCACG..... .......... .......... 491 AGATGTACAG CTATTCAAAT AATGAACTTC TGTTTTCTTT TGCATGAAGA AATCATAGAA 25785 .......... .......... .......... .......... .......... .......... 491 CTTATGTTTT CCTTCCTTGC AGAATCATCT TGATCTGCAT GCTGTCTTAT GGCTGGAAAG 25845 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..AATCATCT TGATCTGCAT GCTGTCTTAT GGCTGGAAAG 529 TTACCTGGTG AAGTGGCCGA AGACATTTAT AGTTGTGTCT CATGCTAGAG AGTTCTTGAA 25905 ||||||| | |||||||||| |||||||||| ||||| |||| ||||||| | |||||||||| ATACCTGGCG AAGTGGCCGA AGACATTTAT AGTTGCGTCT CATGCTACAT AGTTCTTGAA 589 TTCTGTACGT CCTTTCTTCT CTTTGACCTA AAACAATAGT TGGGTTCAGT ATGTTGATGT 25965 |||| TTCT...... .......... .......... .......... .......... .......... 593 TTGTTTGACA TCTCATAAAC CTATCTTTGC TTCTTTCTTC AGGTAGTCAC AGATATCATC 26025 | | |||| ||||||||| .......... .......... .......... .......... ..GCATTCAC GGATATCATC 611 CATCTACAAA ATCAGAAATT GAGCACCTTT AAAGGAGACT ATGATACATT TGAAAGGACA 26085 | ||||||| |||| ||||| |||||||| | |||| ||| |||||||||| ||| |||||| CGTCTACAAT ATCACAAATT GAGCACCTAT GGAGGATACT ATGATACATT TGAGAGGACA 671 CGAGAAGAAC AAGTTAAGAA TCAACAGAAA GCATTCGAGG CAAATGAACG TACAAGGGCC 26145 | |||| ||| ||| || || || ||||| | |||||||||| |||||||||| |||||||||| CTAGAATAAC CAGTGAACAA TCCACAGACA GCATTCGAGG CAAATGAACG TACAAGGGCC 731 CACATGCAGG TCTTTCCCAA TTATATTTAC CTTTTTTTTT TTGAGATGAT AACTTTAATT 26205 ||||||||| CACATGCAG. .......... .......... .......... .......... .......... 740 ACATTCACTT TATTGGTAGA CTATTGCAAA CAGATTATTT GCGACCTTAT TTGCAGATTT 26265 .......... .......... .......... .......... .......... .......... 740 CTTGTCTCGC TGTTTAATGC TTTGATACAT TTTTTTGGCT ATAATGCTGT GCAGACCTTT 26325 |||||| .......... .......... .......... .......... .......... ....ACCTTT 746 ATTGACAAGT TCAGGTACAA TGCAAAGCGT GCATCTCTTG TTCAGTCTAG AATTAAGGTA 26385 |||||||||| ||| |||||| ||| ||||| |||||||||| |||||||||| |||||| ATTGACAAGT TCACGTACAA TGCCTAGCGT GCATCTCTTG TTCAGTCTAG AATTAAT... 803 TGCATTCATT GCTGCTCCTA TATATCTTGA TCCAATTGTT TAATAATTTA ATTAGGTCCA 26445 .......... .......... .......... .......... .......... .......... 803 CTTTTGATTC CCTAGCATGC CATGATCAGT ACCTGAATCG TTTTCCTTGA ATTTGACAGG 26505 | .......... .......... .......... .......... .......... .........G 804 CACTGGAACG AATTGGTCGT GTGGATGAAG TCATCAATGA TCCTGAGTAC GCATTCATTC 26565 ||||| |||| | ||| || | ||||||||| |||||||||| |||||| CACTGAAACG AGTTGCTCCT GTGGATGAAA TCATCAATGA TCCTGA.... .......... 850 CTTTAACACA TTGCTCCTAT ATGTTTGTGT ATTTTAACTC TCTTATGATG TTTAACTTGT 26625 .......... .......... .......... .......... .......... .......... 850 TATAACCTGC ATCGATAAAA TTCCGATTTC TGTCATGTTG CATTTTTATA ATTAAATGAA 26685 .......... .......... .......... .......... .......... .......... 850 CTCATTGTTA TTTTGCATAT GATATATGCA GCTACAAGTT TGAGTTCCCT TCTCCTGATG 26745 |||| | || ||||||||| |||||||||| .......... .......... .......... .CTACGACTT TGAGTTCCCA TCTCCTGATG 879 ATAGACCTGG CGCTCCTATT ATAAGCTTCA GGTTAAACAT CTCTTAGTCT GTGGCTAAGA 26805 |||||||||| |||||||||| |||| ||||| ATAGACCTGG CGCTCCTATT ATAATCTTCA C......... .......... .......... 910 CATTCTTGTG ATCTCTTGTC AGACAGCAAA TCTCAGCTAA TTAACTTCTT ACCTTATTGT 26865 .......... .......... .......... .......... .......... .......... 910 AACTAATGCA GTGACGCATC CTTTGGATAT CCTGGGGGAC CAATATTGTT CAAAAATTTG 26925 |||| |||| ||||||||| |||| ||||| ||||||| | | |||||||| .......... .TGACACATC ATTTGGATAT CCTGAGGGAC TAATATTGCT CCAAAATTTG 959 AATTTTGGAA TAGATTTGGA TAGCAGAGTA GCAAGTAAGA CCTTTATTGT CTACCAATCA 26985 ||||||| | |||||||||| || | |||| | | AATTTTGAAG TAGATTTGGA TATCCAAGTA ACCA...... .......... .......... 993 AGTATTTTCA AGTTCACTTA ACTGGTGCAA ACCTTTGTAA ACTGTACGTA TGGGTCAGTA 27045 .......... .......... .......... .......... .......... .......... 993 ATATGTCTCT CTGCATTGAC GTTGAGTTTT TCTGTTGGGA AGTAAAATTA GATCTCTTTA 27105 .......... .......... .......... .......... .......... .......... 993 TTTGTGAGTT AGGTAGTATG TGGTTTTGGC ATGTGTATTT TTATAATTGT TTTTTAATCA 27165 .......... .......... .......... .......... .......... .......... 993 TTTTTACTGT TTTACATATC ATGGACCTTG TCTCACCTTA TGTATTTTCC AGTGGTTGGT 27225 |||||| .......... .......... .......... .......... .......... ..TGGTTGCG 1001 CCTAATGGTA TT-GGAAAGT CAACAATACT T-AAGCTTAT TTCTGG-GGA GCTTCAACCA 27282 |||||||| | || ||||||| |||||| ||| | || ||||| ||| || ||| || | ||| CCTAATGGAA TTGGGAAAGT CAACAAAACT TAAACCTTAT TTCGGGAGGA CCTCAACCCA 1061 ACCTCAGGGA CTGTTTTCCG CTCTGCTAAG GTAAACTTTA TTTGGCAAAA ACTTACGAGA 27342 |||||||||| |||||| | ||| | ||| ACCTCAGGGA ACGTTTTCGG CTCCGGCAAG .......... .......... .......... 1091 TTTTGTGGGT TTTTTTTTAT AAAAAAAAAA TCACTTCCAA TGTCTACTAG TTCTGTCCTT 27402 .......... .......... .......... .......... .......... .......... 1091 CACACCATAT ATCAATATTG TTCTGGTCAA TTTGTGTTTC AGCCGTACGT TCTCTCATTG 27462 .......... .......... .......... .......... .......... .......... 1091 CAATTCCTGT CACCTTTTAG TTATTAAAAG TCTATAGACT AATGATTCTG TATGAGCAAA 27522 .......... .......... .......... .......... .......... .......... 1091 TGCTAGTGGT GTTCTTTTGA CCTTATAATT ATTTGTGCAG GCAAATGTTT CATTTTGCTC 27582 .......... .......... .......... .......... .......... .......... 1091 TATTCAGTTA CTTGATCTTA ATGCATTCTA AATGCTCTTC ACTTTTTGTT TAGGTCCGTA 27642 | ||| | .......... .......... .......... .......... .......... ...GCCCGAA 1098 TTGCTGTATT TAGTCAGCAT CATGTTGATG GGCTGGATCT GTCCTCAAAT CCCCTCTTAT 27702 |||||| ||| | || ||| ||| |||||| ||| ||| || |||| | ||| |||| | || TTGCTGGATT AAAACAACAT CATTTTGATG GGCGGGAACT GTCC-CCAAT CCCCCCCAAT 1157 ACATGATGCG TTGCTTTCCA GTAAGTTCTC CTAATCAATG ATGTATTTTC TTGTAAATTC 27762 ||| | || |||| | || ACAGAACGCC TTGCCTCCCG .......... .......... .......... .......... 1177 TAAAATGTAT GTGTAATAAG TTCTCTCTAA AGAAGGTGGG TCAACAGTTG ATTTTTCTGA 27822 .......... .......... .......... .......... .......... .......... 1177 ATTTATTTGT GTCCGAACTC CTGATAAGAC ATTTTTAAAG GTTTAATTGC TCCCTTACAT 27882 .......... .......... .......... .......... .......... .......... 1177 CTCATATTGC CAAAGTGAAT CTGCAAGTCA TCTTTTTTAA TGTATTGACC TTGCTCTGGC 27942 .......... .......... .......... .......... .......... .......... 1177 TTCCTGCAGG GAGTGCCTGA ACAAAAATTA CGTGG 27977 | || || || || |||||| || || .........G GATGCCCCGA AC-AAAATTC CGGGG 1202 hqPGS_C08SLm0006K11.1+_SGN-U335354+ (24346 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 27977) ******************************************************************************** EST sequence 17 +strand 621 n (File: SGN-U328023+) 1 CACAACCTCC ATAACTATTT TCTCTCTATC AGTTTCTCTG TATACTGCTT CTTCTCTTTT 61 TAGAGTAGAA AAATCGCAGG CCTAGAGTTG TACTAGTTTC GCCTTTTTGT GTTCTGAATC 121 ACTGTAAAGT GTGTGAGGTT TCGGCTATCG CATCAACAAC AGTCAATAGC AACTACTTTC 181 TTTTTTTTTT CGTTTTCGGT TTTCCCAATT GTTATGGTGT ATGGACCACT AGTACTGCAA 241 AAAGTTGTTT TCTGTGAAAG CAATTTCTGG AAGGAAAATC AAGCATAGTG TGTTTGTTGT 301 ACAGCACTAC TGTAGTTACT AGTAAAAAAC CACTGTATCA CATAGAGAGC GTGAAAAATT 361 AACCAAAAAA ATGCTTGAAA CGGTGAAGTA CTTGCTTGGT TCCGCCGGAG CTAGCGGTTA 421 CGGTTCAAAA TCCACTGCCG AGAACGTCAC CGAACAGTCT CCTGATCTTC GGTCGGTCAC 481 CGCTATTATC ACTGGTGCGA CGTCAGGAAT TGGAGCGGAG ACGGCGAGAG TTCTGGCAAA 541 ACGTGGTGTT AAGCTGATTT TACCGGCGCG TAGTGTAAAA GCGGCAGAGG AAACAAAAAC 601 TCGAATCCTA TCTGAAGTGC C Predicted gene structure (within gDNA segment 44283 to 46189): Exon 1 44883 45376 ( 494 n); cDNA 1 494 ( 494 n); score: 1.000 Intron 1 45377 45452 ( 76 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 45453 45579 ( 127 n); cDNA 495 621 ( 127 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-U328023+ 1.000 621 1.000 C PGS_C08SLm0006K11.1+_SGN-U328023+ (44883 45376,45453 45579) Alignment (genomic DNA sequence = upper lines): CACAACCTCC ATAACTATTT TCTCTCTATC AGTTTCTCTG TATACTGCTT CTTCTCTTTT 44942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACCTCC ATAACTATTT TCTCTCTATC AGTTTCTCTG TATACTGCTT CTTCTCTTTT 60 TAGAGTAGAA AAATCGCAGG CCTAGAGTTG TACTAGTTTC GCCTTTTTGT GTTCTGAATC 45002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTAGAA AAATCGCAGG CCTAGAGTTG TACTAGTTTC GCCTTTTTGT GTTCTGAATC 120 ACTGTAAAGT GTGTGAGGTT TCGGCTATCG CATCAACAAC AGTCAATAGC AACTACTTTC 45062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTAAAGT GTGTGAGGTT TCGGCTATCG CATCAACAAC AGTCAATAGC AACTACTTTC 180 TTTTTTTTTT CGTTTTCGGT TTTCCCAATT GTTATGGTGT ATGGACCACT AGTACTGCAA 45122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CGTTTTCGGT TTTCCCAATT GTTATGGTGT ATGGACCACT AGTACTGCAA 240 AAAGTTGTTT TCTGTGAAAG CAATTTCTGG AAGGAAAATC AAGCATAGTG TGTTTGTTGT 45182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTGTTT TCTGTGAAAG CAATTTCTGG AAGGAAAATC AAGCATAGTG TGTTTGTTGT 300 ACAGCACTAC TGTAGTTACT AGTAAAAAAC CACTGTATCA CATAGAGAGC GTGAAAAATT 45242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCACTAC TGTAGTTACT AGTAAAAAAC CACTGTATCA CATAGAGAGC GTGAAAAATT 360 AACCAAAAAA ATGCTTGAAA CGGTGAAGTA CTTGCTTGGT TCCGCCGGAG CTAGCGGTTA 45302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCAAAAAA ATGCTTGAAA CGGTGAAGTA CTTGCTTGGT TCCGCCGGAG CTAGCGGTTA 420 CGGTTCAAAA TCCACTGCCG AGAACGTCAC CGAACAGTCT CCTGATCTTC GGTCGGTCAC 45362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTCAAAA TCCACTGCCG AGAACGTCAC CGAACAGTCT CCTGATCTTC GGTCGGTCAC 480 CGCTATTATC ACTGGTAAGG ATTTTCATTG AAAAAAATTG ATTAAATGAA ATTTTACCTC 45422 |||||||||| |||| CGCTATTATC ACTG...... .......... .......... .......... .......... 494 ATTTCTGATC TGAGCATGTG ACATATGCAG GTGCGACGTC AGGAATTGGA GCGGAGACGG 45482 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGCGACGTC AGGAATTGGA GCGGAGACGG 524 CGAGAGTTCT GGCAAAACGT GGTGTTAAGC TGATTTTACC GGCGCGTAGT GTAAAAGCGG 45542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAGTTCT GGCAAAACGT GGTGTTAAGC TGATTTTACC GGCGCGTAGT GTAAAAGCGG 584 CAGAGGAAAC AAAAACTCGA ATCCTATCTG AAGTGCC 45579 |||||||||| |||||||||| |||||||||| ||||||| CAGAGGAAAC AAAAACTCGA ATCCTATCTG AAGTGCC 621 hqPGS_C08SLm0006K11.1+_SGN-U328023+ (44883 45376,45453 45579) ******************************************************************************** EST sequence 14 +strand 1064 n (File: SGN-U327327+) 1 GGATGCGGAG ATCATCGTTA TGGCTCTCGA TCTTAGCTCT GGGAGTGCCG TACGGAATTT 61 CGTCGCTGAA TTTGAATATC TGAATTTTCC TCTCAATCTT CTCATAAACA ACGCCGGAAA 121 ATTCGCTCAC CAGCATGCCA TTTCTGAGGA TGGAATTGAG ATGACATTTG CTACTAATCA 181 CTTAGGCCAT TTCCTTTTAA CAAAGCTTTT ACTGAAGAAG ATGATCGAGA CGGCTAATGA 241 AACGGGCGTT CAAGGAAGAA TAGTGAATGT ATCCTCAAGC ATCCATGGCT GGTTTTCCGG 301 CGACTCGATT CAGTACCTCC GACTGATCAC TAAAGACAAA AGTCAATACG ATGCGACACG 361 TGCATATGCT CTCTCGAAGC TGGCTAATGT TTTGCACACC AAGGAGCTGG CTCGGGTATT 421 GAAAAAAACG GGGGCAAATG TGACAGTCAA TTGTGTTCAT CCTGGAATTG TAAGAACTAG 481 ACTCACTAGA GAACGAGAAG GCCTCGTCAC TGATCTGGTA TTCTTTTTGA CCTCAAAACT 541 CTTGAAGACT ATTCCACAGG CAGCTGCAAC AACTTGCTAT GTTGCTACTC ACCCAAGACT 601 TGCAAATGTG AGTGGAAAAT ATTTTGCAGA CTGTAATGAA GTTTGTTCTT CAAAGTTGGG 661 TTCCAATTCA ACAGAAGCAG CACGCATATG GTCAGCTTCA GAGATCATGG TTGCAAAAAA 721 TTCAAATGCA AATTTAGATC CATTGGAGGC CAGCTTACTC TGACGCTCAA AGCGACTCGT 781 TCCTTGGCTG CGGAGGATTT AAAACAGGCT ATAAACAGAA AATAGTTAGT TCTTATATGG 841 TGTAGGACTT CTGGCATAAT GAGGAAGATA TAAGTAAGTA GTTCATGTAT AAAGGAAAAG 901 TTTTTGCAGC AACATAAACA ATATATATAT ATATATAATA CACACAAACC TAGCTAGCTA 961 GGAGTATGTT CATCTATATA GTAAGCTTAG AACTCCTATT ATAATATGTA CATTGGTTTT 1021 ATTTGTTCGT TTAGTTTGTT AATGTTAAAT TTTAAAAAAA AAAA Predicted gene structure (within gDNA segment 44944 to 48787): Exon 1 45580 45684 ( 105 n); cDNA 1 105 ( 105 n); score: 0.962 Intron 1 45685 45794 ( 110 n); Pd: 0.990 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 45795 45874 ( 80 n); cDNA 106 185 ( 80 n); score: 1.000 Intron 2 45875 45982 ( 108 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 45983 46139 ( 157 n); cDNA 186 342 ( 157 n); score: 1.000 Intron 3 46140 46780 ( 641 n); Pd: 0.994 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 4 46781 46862 ( 82 n); cDNA 343 424 ( 82 n); score: 1.000 Intron 4 46863 47055 ( 193 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 47056 47143 ( 88 n); cDNA 425 512 ( 88 n); score: 1.000 Intron 5 47144 47377 ( 234 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 47378 47424 ( 47 n); cDNA 513 559 ( 47 n); score: 1.000 Intron 6 47425 47582 ( 158 n); Pd: 0.999 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 7 47583 48077 ( 495 n); cDNA 560 1054 ( 495 n); score: 1.000 PPA cDNA 1055 1064 MATCH C08SLm0006K11.1+ SGN-U327327+ 0.996 1054 0.991 C PGS_C08SLm0006K11.1+_SGN-U327327+ (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47424,47583 48077) Alignment (genomic DNA sequence = upper lines): GGAGGCGGAG ATCATCGTTA TGGCTCTCGA TCTTAGCTCT CTGAGTTCCG TACGGAATTT 45639 ||| |||||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||| GGATGCGGAG ATCATCGTTA TGGCTCTCGA TCTTAGCTCT GGGAGTGCCG TACGGAATTT 60 CGTCGCTGAA TTTGAATATC TGAATTTTCC TCTCAATCTT CTCATGTAAA GCTTCATTCA 45699 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGTCGCTGAA TTTGAATATC TGAATTTTCC TCTCAATCTT CTCAT..... .......... 105 CTATAATTAA CCTCTTTAGT TCCGATCAGC TGTGTATATT AGTGATTAGT TTTCTAATTT 45759 .......... .......... .......... .......... .......... .......... 105 TATTTAGAAG TCACGTTTTA TCTGTTTGAT TGCAGAAACA ACGCCGGAAA ATTCGCTCAC 45819 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAACA ACGCCGGAAA ATTCGCTCAC 130 CAGCATGCCA TTTCTGAGGA TGGAATTGAG ATGACATTTG CTACTAATCA CTTAGGTAAA 45879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAGCATGCCA TTTCTGAGGA TGGAATTGAG ATGACATTTG CTACTAATCA CTTAG..... 185 TTTTCAACTG TTTTCTCTCT CGTTTACATG CATGTGAAAA AGTTTTTTGA TACCGATTAA 45939 .......... .......... .......... .......... .......... .......... 185 ATTAATCATT CATTTTTTAA AATTTATGTG TGCCAAACTT CAGGCCATTT CCTTTTAACA 45999 ||||||| |||||||||| .......... .......... .......... .......... ...GCCATTT CCTTTTAACA 202 AAGCTTTTAC TGAAGAAGAT GATCGAGACG GCTAATGAAA CGGGCGTTCA AGGAAGAATA 46059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTTTAC TGAAGAAGAT GATCGAGACG GCTAATGAAA CGGGCGTTCA AGGAAGAATA 262 GTGAATGTAT CCTCAAGCAT CCATGGCTGG TTTTCCGGCG ACTCGATTCA GTACCTCCGA 46119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGTAT CCTCAAGCAT CCATGGCTGG TTTTCCGGCG ACTCGATTCA GTACCTCCGA 322 CTGATCACTA AAGACAAAAG GTGAACTTTA TTCATTATTA TCTCTTCCGT AACCGTTTTG 46179 |||||||||| |||||||||| CTGATCACTA AAGACAAAAG .......... .......... .......... .......... 342 AAAAATCGGG GAAAAGTACA ATGCGTTACT TTCATAGGAC TTTGTACTGA AATAAATGCA 46239 .......... .......... .......... .......... .......... .......... 342 TTATTGGTAG AAGATAATAT AGGATTTCAA AGTATAATAT ATATTCGTGT ATTCACTAGT 46299 .......... .......... .......... .......... .......... .......... 342 ATTTCTGAAA ATAAAATATA ATATTTGTAT ATTGAAAGAC GTTTTTATAA TATTATATAT 46359 .......... .......... .......... .......... .......... .......... 342 ACACGGACTA CTGGCCTCTT GCAATTTTTT ATTATCTGGA TTTAAGATTT GACTATGTAA 46419 .......... .......... .......... .......... .......... .......... 342 AAAATTCGCA AATTATTTGA AAGTTAAATT TATATCTACT ATCGTCATTG TATTAAATTA 46479 .......... .......... .......... .......... .......... .......... 342 AATCTGAATG GATTTAGACT AAAATATATG AGGTGGTGTT CAACCATGAT TTGTTAGTAA 46539 .......... .......... .......... .......... .......... .......... 342 ACTTCAACTG ACTTAACAAA AAGACGTAGT TAATTATGCA CAGTCGAAAC TTAAAGTAGG 46599 .......... .......... .......... .......... .......... .......... 342 GTTAGATTTA TATCTCATTT TTGAGCTTTA AACGACCGAT TTTTTTTAAA AAATCATTTC 46659 .......... .......... .......... .......... .......... .......... 342 ATTATGAATA CAAATTTAAT CGAGTAATAA ATTAAAATTA AAAAAAACTA TTGGAAAAGA 46719 .......... .......... .......... .......... .......... .......... 342 AGTAAACATA ATTAGCTTGA TTTAATTGTG AAAGAGAGTA ATTTGTCTTG TTATTGGACA 46779 .......... .......... .......... .......... .......... .......... 342 GTCAATACGA TGCGACACGT GCATATGCTC TCTCGAAGCT GGCTAATGTT TTGCACACCA 46839 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TCAATACGA TGCGACACGT GCATATGCTC TCTCGAAGCT GGCTAATGTT TTGCACACCA 401 AGGAGCTGGC TCGGGTATTG AAAGTAAGTC CAAAATTTTC TCTCTCCTTT TTTTTTAAAA 46899 |||||||||| |||||||||| ||| AGGAGCTGGC TCGGGTATTG AAA....... .......... .......... .......... 424 AAAGAAAAAG CTTTTCGAAA AAAATGTTAT TTATTGATTT AGGAAAAAGT GAAATTTGTT 46959 .......... .......... .......... .......... .......... .......... 424 GGCTTGCTCC TGATTCATTA GAAGATTGAA TTATTTGTTT GCGTTAAGAT ACTAGAAATT 47019 .......... .......... .......... .......... .......... .......... 424 AAATTTAGAT GTCTTTTTGT CTTTTAAATG TTGCAGAAAA CGGGGGCAAA TGTGACAGTC 47079 |||| |||||||||| |||||||||| .......... .......... .......... ......AAAA CGGGGGCAAA TGTGACAGTC 448 AATTGTGTTC ATCCTGGAAT TGTAAGAACT AGACTCACTA GAGAACGAGA AGGCCTCGTC 47139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGTGTTC ATCCTGGAAT TGTAAGAACT AGACTCACTA GAGAACGAGA AGGCCTCGTC 508 ACTGGTACTT CTTTTTTTTT TTTCACCAAC CATTAATTAA GTTGATTAAT TTTTTTTAAG 47199 |||| ACTG...... .......... .......... .......... .......... .......... 512 TGGATTTGAT TGATCAAAAT AATTTACAAA ATCAAAGTTT ACAAAAACTA GCTAGCGTGA 47259 .......... .......... .......... .......... .......... .......... 512 TTAGATACCT CGTTTGACAA AATAAAGAAA ACAGCTTGAA TAGTGTGGTT TAAAATTTAA 47319 .......... .......... .......... .......... .......... .......... 512 AGTAAAATAT ATTATGTTCA AAATAATACC TCATGATTTT TGTTTTTTAT AAATGCAGAT 47379 || .......... .......... .......... .......... .......... ........AT 514 CTGGTATTCT TTTTGACCTC AAAACTCTTG AAGACTATTC CACAGGTTAG TTTTCTCATA 47439 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTGGTATTCT TTTTGACCTC AAAACTCTTG AAGACTATTC CACAG..... .......... 559 CCCATCATCT CAAAATCTGC ATCCTAAGGG AATCTAATAT TTATATAGAC ATCAATGGTT 47499 .......... .......... .......... .......... .......... .......... 559 GATTCTGTAT ATTGAAAAAA ACATAACGAT AAACTATATG CAAGCATGAT TACTTATATG 47559 .......... .......... .......... .......... .......... .......... 559 ACGTTCAATG ATATAAATTT CAGGCAGCTG CAACAACTTG CTATGTTGCT ACTCACCCAA 47619 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GCAGCTG CAACAACTTG CTATGTTGCT ACTCACCCAA 596 GACTTGCAAA TGTGAGTGGA AAATATTTTG CAGACTGTAA TGAAGTTTGT TCTTCAAAGT 47679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTTGCAAA TGTGAGTGGA AAATATTTTG CAGACTGTAA TGAAGTTTGT TCTTCAAAGT 656 TGGGTTCCAA TTCAACAGAA GCAGCACGCA TATGGTCAGC TTCAGAGATC ATGGTTGCAA 47739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTTCCAA TTCAACAGAA GCAGCACGCA TATGGTCAGC TTCAGAGATC ATGGTTGCAA 716 AAAATTCAAA TGCAAATTTA GATCCATTGG AGGCCAGCTT ACTCTGACGC TCAAAGCGAC 47799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTCAAA TGCAAATTTA GATCCATTGG AGGCCAGCTT ACTCTGACGC TCAAAGCGAC 776 TCGTTCCTTG GCTGCGGAGG ATTTAAAACA GGCTATAAAC AGAAAATAGT TAGTTCTTAT 47859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTCCTTG GCTGCGGAGG ATTTAAAACA GGCTATAAAC AGAAAATAGT TAGTTCTTAT 836 ATGGTGTAGG ACTTCTGGCA TAATGAGGAA GATATAAGTA AGTAGTTCAT GTATAAAGGA 47919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGTAGG ACTTCTGGCA TAATGAGGAA GATATAAGTA AGTAGTTCAT GTATAAAGGA 896 AAAGTTTTTG CAGCAACATA AACAATATAT ATATATATAT AATACACACA AACCTAGCTA 47979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTTTG CAGCAACATA AACAATATAT ATATATATAT AATACACACA AACCTAGCTA 956 GCTAGGAGTA TGTTCATCTA TATAGTAAGC TTAGAACTCC TATTATAATA TGTACATTGG 48039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAGGAGTA TGTTCATCTA TATAGTAAGC TTAGAACTCC TATTATAATA TGTACATTGG 1016 TTTTATTTGT TCGTTTAGTT TGTTAATGTT AAATTTTA 48077 |||||||||| |||||||||| |||||||||| |||||||| TTTTATTTGT TCGTTTAGTT TGTTAATGTT AAATTTTA 1054 hqPGS_C08SLm0006K11.1+_SGN-U327327+ (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47424,47583 48077) ******************************************************************************** EST sequence 15 +strand 587 n (File: SGN-U327489+) 1 ATTGATCTCT TCTTCGCTTC TGGAGTGAAT TTGCCTTTTT GGTTTGTACT TGGGTTTGAA 61 TCATGTTTTT TTTAACTCTG ATGCCATTGA CTTGTAGAGG TCGAAAGGAG AGCCTCTACG 121 TGGCTTTGAA GATGAAAAGT TTTGCTTCAT CGCTTTTAGA CGAGGAGAAC GGCCAAAGCA 181 AGTTCTTCTT CAAGAATACG GAATGCCAAT TGTTAATTTG TTTTTAGCTT GTTCCATCAT 241 TACCATTGTG AAGTGCAAAT TTTCACTTTT TATTTTTATT TTTTATTTTC GCCATCTTCT 301 TAAAGTCTCC ATTGAACTAA TTTCTTTGTT TTTCAAGCAG AGAGCCTTGG CCATTGGATA 361 GTATGAAGTT TGAGACATTG AAGGAGCAGC ATGCCAGAAG GAATCCAGAG GATTTAGAAA 421 TTGACTATGA GGACCAATTC ATCTCAGAAG ATGAGGGTAT TGAGGATGAA GTAGATCATG 481 TCACATATGA TTCCGATGCT ACAGAAACAG ATGCTGTTAC TGAAAATGAT GATTGGGAGG 541 AAGAAGGTGA AGAAAGGACC CATGCCGATC TTGGTGGTGG TTGGGGA Predicted gene structure (within gDNA segment 53484 to 55375): Exon 1 54084 54512 ( 429 n); cDNA 1 429 ( 429 n); score: 1.000 Intron 1 54513 54607 ( 95 n); Pd: 0.992 (s: 1.00), Pa: 0.955 (s: 1.00) Exon 2 54608 54765 ( 158 n); cDNA 430 587 ( 158 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-U327489+ 1.000 587 1.000 C PGS_C08SLm0006K11.1+_SGN-U327489+ (54084 54512,54608 54765) Alignment (genomic DNA sequence = upper lines): ATTGATCTCT TCTTCGCTTC TGGAGTGAAT TTGCCTTTTT GGTTTGTACT TGGGTTTGAA 54143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATCTCT TCTTCGCTTC TGGAGTGAAT TTGCCTTTTT GGTTTGTACT TGGGTTTGAA 60 TCATGTTTTT TTTAACTCTG ATGCCATTGA CTTGTAGAGG TCGAAAGGAG AGCCTCTACG 54203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGTTTTT TTTAACTCTG ATGCCATTGA CTTGTAGAGG TCGAAAGGAG AGCCTCTACG 120 TGGCTTTGAA GATGAAAAGT TTTGCTTCAT CGCTTTTAGA CGAGGAGAAC GGCCAAAGCA 54263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTTTGAA GATGAAAAGT TTTGCTTCAT CGCTTTTAGA CGAGGAGAAC GGCCAAAGCA 180 AGTTCTTCTT CAAGAATACG GAATGCCAAT TGTTAATTTG TTTTTAGCTT GTTCCATCAT 54323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTTCTT CAAGAATACG GAATGCCAAT TGTTAATTTG TTTTTAGCTT GTTCCATCAT 240 TACCATTGTG AAGTGCAAAT TTTCACTTTT TATTTTTATT TTTTATTTTC GCCATCTTCT 54383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCATTGTG AAGTGCAAAT TTTCACTTTT TATTTTTATT TTTTATTTTC GCCATCTTCT 300 TAAAGTCTCC ATTGAACTAA TTTCTTTGTT TTTCAAGCAG AGAGCCTTGG CCATTGGATA 54443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGTCTCC ATTGAACTAA TTTCTTTGTT TTTCAAGCAG AGAGCCTTGG CCATTGGATA 360 GTATGAAGTT TGAGACATTG AAGGAGCAGC ATGCCAGAAG GAATCCAGAG GATTTAGAAA 54503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGAAGTT TGAGACATTG AAGGAGCAGC ATGCCAGAAG GAATCCAGAG GATTTAGAAA 420 TTGACTATGG TATTTGCTAT CACTATTAAA TCTCAGTTTT GCTTTGCCAT GTTAAAACAT 54563 ||||||||| TTGACTATG. .......... .......... .......... .......... .......... 429 CTACATTCAT TTACAAAGTA GTGACATTTC TCCTTTTATT TCAGAGGACC AATTCATCTC 54623 |||||| |||||||||| .......... .......... .......... .......... ....AGGACC AATTCATCTC 445 AGAAGATGAG GGTATTGAGG ATGAAGTAGA TCATGTCACA TATGATTCCG ATGCTACAGA 54683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGATGAG GGTATTGAGG ATGAAGTAGA TCATGTCACA TATGATTCCG ATGCTACAGA 505 AACAGATGCT GTTACTGAAA ATGATGATTG GGAGGAAGAA GGTGAAGAAA GGACCCATGC 54743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGATGCT GTTACTGAAA ATGATGATTG GGAGGAAGAA GGTGAAGAAA GGACCCATGC 565 CGATCTTGGT GGTGGTTGGG GA 54765 |||||||||| |||||||||| || CGATCTTGGT GGTGGTTGGG GA 587 hqPGS_C08SLm0006K11.1+_SGN-U327489+ (54084 54512,54608 54765) ******************************************************************************** EST sequence 11 +strand 576 n (File: SGN-U326306+) 1 CGATCAATAA ATCAAGAAGG CAGTGAAGGG TCATTTGAAC GGATTGTTAT TACAAAGAGC 61 AGAAACCCAA CATTGCATCA TCAGGCGCGA AGATCGCTTT GGGGTGACTT ATGGCCCTTC 121 TAAATTTTGT TAGAAAAATG GCACTCAAGG TGTTTGGTCC ATCAGTAAGA GCGCAGTGTG 181 ATGTCTGAGT TAGGCACTCA TCACAGAGTT CAAATGTCGC AACAAACAAA AGCCTGGTAG 241 GAGGGGCACG TCTATAATCC ATCAAGTCTC AAACTATGCT TCACTTGCCC TCAGTTATCA 301 AAGAAATTAT TTTTGTTAAA AATAGTTTCT TGAGTAATGT AATAAATGTA TTTTCGTGTG 361 TACCCATTTT CTGAAAAAGA AGAAAAGTGA AGTCAGATGG TTATTCTGAT TATGACAGAG 421 GATAAGATTG GGCCAAATGG CTCAAAAAGT AGAGTTACTG CATACATGTG AACCACATAT 481 GTCTTATTCA TAATTCTTGT ACGGAATCAT GGAACAGTAA AAGAGTTCGA GTCACGTGCC 541 AGCTTAGAAG AAAAAAAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 54220 to 56230): Exon 1 54820 55370 ( 551 n); cDNA 1 551 ( 551 n); score: 1.000 PPA cDNA 552 576 MATCH C08SLm0006K11.1+ SGN-U326306+ 1.000 551 0.957 C PGS_C08SLm0006K11.1+_SGN-U326306+ (54820 55370) Alignment (genomic DNA sequence = upper lines): CGATCAATAA ATCAAGAAGG CAGTGAAGGG TCATTTGAAC GGATTGTTAT TACAAAGAGC 54879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCAATAA ATCAAGAAGG CAGTGAAGGG TCATTTGAAC GGATTGTTAT TACAAAGAGC 60 AGAAACCCAA CATTGCATCA TCAGGCGCGA AGATCGCTTT GGGGTGACTT ATGGCCCTTC 54939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACCCAA CATTGCATCA TCAGGCGCGA AGATCGCTTT GGGGTGACTT ATGGCCCTTC 120 TAAATTTTGT TAGAAAAATG GCACTCAAGG TGTTTGGTCC ATCAGTAAGA GCGCAGTGTG 54999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATTTTGT TAGAAAAATG GCACTCAAGG TGTTTGGTCC ATCAGTAAGA GCGCAGTGTG 180 ATGTCTGAGT TAGGCACTCA TCACAGAGTT CAAATGTCGC AACAAACAAA AGCCTGGTAG 55059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCTGAGT TAGGCACTCA TCACAGAGTT CAAATGTCGC AACAAACAAA AGCCTGGTAG 240 GAGGGGCACG TCTATAATCC ATCAAGTCTC AAACTATGCT TCACTTGCCC TCAGTTATCA 55119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGGCACG TCTATAATCC ATCAAGTCTC AAACTATGCT TCACTTGCCC TCAGTTATCA 300 AAGAAATTAT TTTTGTTAAA AATAGTTTCT TGAGTAATGT AATAAATGTA TTTTCGTGTG 55179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAATTAT TTTTGTTAAA AATAGTTTCT TGAGTAATGT AATAAATGTA TTTTCGTGTG 360 TACCCATTTT CTGAAAAAGA AGAAAAGTGA AGTCAGATGG TTATTCTGAT TATGACAGAG 55239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCCATTTT CTGAAAAAGA AGAAAAGTGA AGTCAGATGG TTATTCTGAT TATGACAGAG 420 GATAAGATTG GGCCAAATGG CTCAAAAAGT AGAGTTACTG CATACATGTG AACCACATAT 55299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAGATTG GGCCAAATGG CTCAAAAAGT AGAGTTACTG CATACATGTG AACCACATAT 480 GTCTTATTCA TAATTCTTGT ACGGAATCAT GGAACAGTAA AAGAGTTCGA GTCACGTGCC 55359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTATTCA TAATTCTTGT ACGGAATCAT GGAACAGTAA AAGAGTTCGA GTCACGTGCC 540 AGCTTAGAAG A 55370 |||||||||| | AGCTTAGAAG A 551 hqPGS_C08SLm0006K11.1+_SGN-U326306+ (54820 55370) ******************************************************************************** EST sequence 30 +strand 1044 n (File: SGN-U320618+) 1 AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 61 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 121 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 181 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGAT TGCTTAGGTG 241 TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA AAAGAGGAAA 301 TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG GTAATCGTTG 361 GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA ATTATTGGAA 421 TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC ACAAGAATTT 481 GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA GAAAAGAAGT 541 GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG AGAAGATAAA 601 AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA ATAGTTTTGA 661 AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT AATTTTGAAA AAGTTGATGA 721 TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG GAATTAGATT TTGATGAATT 781 ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA GAAAGCTGCA ATTTTTCAAA 841 CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT GAAGAATATC TTCTACTTCT 901 TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA ATGTAAGTTT TAGTTTGGAT 961 AGGCTTTTTA TAAAGTTTGT TGATCCGACT AATTCAAATT AACGAGTAAT GTATATTTGT 1021 TTAGTTTCTA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 58047 to 55418): Exon 1 57447 57221 ( 227 n); cDNA 1 227 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 (s: 1.00), Pa: 0.796 (s: 1.00) Exon 2 56970 56168 ( 803 n); cDNA 228 1030 ( 803 n); score: 1.000 PPA cDNA 1031 1044 MATCH C08SLm0006K11.1- SGN-U320618+ 1.000 1030 0.987 C PGS_C08SLm0006K11.1-_SGN-U320618+ (57447 57221,56970 56168) Alignment (genomic DNA sequence = upper lines): AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 57388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCACTAC CTTTCTCCTA ATTTTTGCAT CTTCTTAGTT CTCTCTGTTC TGAAAATTTT 60 TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 57328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGAAA AAACACACAC AAAAAAAAAT AAAAATGGGA AGAGCACCAT GTTGTGCTAA 120 AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 57268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGGATTG CGTAAAGGGC CATGGTCTAC TAAAGAAGAT TTATTACTTA CTAATTATAT 180 CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTGGTA ATTTTTCTTT 57208 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAATCAATAT GGTGAAGGCC AATGGAGATC TTTGCCTAAA AATGCTG... .......... 227 TTTCTAATTC CTTTCTCGAT GTTTGATACG ATACAAGTTA TTTTTAATAT ATATAGTAAC 57148 .......... .......... .......... .......... .......... .......... 227 AATAAATTTT AATTTTCTTC TTTAAAATTT GTGTGTTTAA TACATTATTG TTATGAAAAT 57088 .......... .......... .......... .......... .......... .......... 227 TCTGTTATAG TTCTTGCTCG TTACGGAATG AAATGACTTT TGTTGTACCA TATGTATTTA 57028 .......... .......... .......... .......... .......... .......... 227 TATATGAGTG TATTTATTTT CTTGCTCGTT AGCGTAATTC TATGAAAAAT ATTTCAGGAT 56968 ||| .......... .......... .......... .......... .......... .......GAT 230 TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 56908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTAGGTG TGGGAAAAGT TGTAGATTAA GATGGGTGAA TTATTTAAAG CCAGGGATTA 290 AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 56848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGAAA TTTTAGTGAA GATGAAGAAG ATCTTATAGT GAGATTACAT TCACTTCTGG 350 GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 56788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGTTG GTCATTAATT GCCGGACGAT TACCTGGTCG AACAGATAAT GAAATCAAGA 410 ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 56728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTGGAA TACGCATTTG ACCAAGAAGC TCAGAAGCAC AGGAATTGAA CCAAAACCCC 470 ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 56668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAATTT GACCAAATTA AAGGAGAAAT CAAGAAAACA AACCAAAAAG GAGAAATCAA 530 GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 56608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAAGT GGGGAAGAAA AGCAATGATG AGAAGTTGAA GGGTCAAATT GCACAAGTTG 590 AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA 56548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGATAAA AGTATTTGCA CCAAAGCCCA TAAGGATTTC TTGTGGGATT TCAAGGAACA 650 ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT AATTTTGAAA 56488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTTTTGA AAATGATACA TTGAGTACTA CTACTTGTTC CTCAAATAGT AATTTTGAAA 710 AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG GAATTAGATT 56428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGATGA TGGAAAAGAC AGGGAAAAAG AGGTGAAGTT ATTTCCAAGG GAATTAGATT 770 TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA GAAAGCTGCA 56368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGAATT ACTTGAAGGG GGTGGATTTT ATGATGAATT TCTTATGGGA GAAAGCTGCA 830 ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT GAAGAATATC 56308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTCAAA CAAAGTGGAA ATGAATGATA ATATGGTGGA AAAAGTATAT GAAGAATATC 890 TTCTACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA ATGTAAGTTT 56248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTACTTCT TTCTGAAATT CAAGAAGATC AAACGGAGCA AAAATTCTCA ATGTAAGTTT 950 TAGTTTGGAT AGGCTTTTTA TAAAGTTTGT TGATCCGACT AATTCAAATT AACGAGTAAT 56188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTTGGAT AGGCTTTTTA TAAAGTTTGT TGATCCGACT AATTCAAATT AACGAGTAAT 1010 GTATATTTGT TTAGTTTCTA 56168 |||||||||| |||||||||| GTATATTTGT TTAGTTTCTA 1030 hqPGS_C08SLm0006K11.1-_SGN-U320618+ (57447 57221,56970 56168) ******************************************************************************** EST sequence 12 -strand 902 n (File: SGN-U337164-) 1 TGCGCTTCTC TGAATGATAC CCGAGTTTCT CACATACTCG ATCGACTCCT CGATATGCGC 61 CATCGTACGA CCTACCGCCC TGTCGACCCA CTTCCGTCCG CTCCCTCCTC GCTGATCGTC 121 ACGACAGTAG CTGCACATTT CTCTTCAGCT TGATTTTACC TCTCTGTTCG AGTCTGCCCT 181 CTGTTCACAC CCCCCGGCGT CTCTCTCCAG TCGAATCTTC CATCTAGTAG GAGACGACTA 241 CCCCCTCTAC TTGTCCTCGC TCCCCCCCTC GCCTCTGTCT AGTAGTCGCG CCCCCCCCGT 301 TCTAACCACA AAAGGGGAAT TCCCGAAATT AAAGTGGGGA AGAAAAGCAT CGATGAGAAG 361 CTGACGGGTC AAATACCACA AGTTGAGAAG ATAAAAGTAT GGCACCCAAA GCCCATAAGG 421 ATTTTCTTGT GGGATTTCAA GGAACACTCC TTCCGAAAAT GATACATTGA GTACTACTAA 481 AAAAAACATC AAATAGTAAT TTTGAAAAAG TTGATGATGG AAAAGACAGG GAAAAAGAGG 541 TGAAGTTATT TCCAAGGGAA TTAGATTTTG ATGAATTACT TGAAGGGGGT GGATTTTATG 601 ATGAATTTCT TATGGGAGAA AGCTGCAATT TTTCAAACAA AGTGGAAATG AATGATAATA 661 TGGTGGAAAA AGTATATGAA GAATATCTTC TACTTCTTTC TGAAATTCAA GAAGATCAAA 721 CGGAGCAAAA ATTCTCAATG TAAGTTTTAG TTTGGATAGG CTTTTTATAA AGTTTGTTGA 781 TCCGACTAAT TCAAATTAAC GAAGTAATGT ATATTTGTTT AGTTGCTAAA AAAAAAAAAA 841 AAAAAAAAAA CTCGAGGGGG GGCCCGGTAC CCAATCGCCC TTAGGAGTCC TACAATATAA 901 AN Predicted gene structure (within gDNA segment 60986 to 54792): Exon 1 56688 56168 ( 521 n); cDNA 304 828 ( 525 n); score: 0.918 MATCH C08SLm0006K11.1- SGN-U337164- 0.918 521 0.578 C PGS_C08SLm0006K11.1-_SGN-U337164- (56688 56168) Alignment (genomic DNA sequence = upper lines): AAACCAAAAA GGAGAAATCA AGAAA-AGAA GTGGGGAAGA AAAGCAATGA TGAGAAGTTG 56630 || | |||| || ||| || |||| || |||||||||| |||||| || ||||||| || AACCACAAAA GGGGAATTCC CGAAATTAAA GTGGGGAAGA AAAGCATCGA TGAGAAGCTG 363 AAGGGTCAAA TTGCACAAGT TGAGAAGATA AAAGTATTTG CA-CCAAAGC CCATAAGGA- 56572 | |||||||| | ||||||| |||||||||| |||||| | | || ||||||| ||||||||| ACGGGTCAAA TACCACAAGT TGAGAAGATA AAAGTA-TGG CACCCAAAGC CCATAAGGAT 422 TTTCTTGTGG GATTTCAAGG AACAATAGTT TTGAAAATGA TACATTGAGT ACTACT-ACT 56513 |||||||||| |||||||||| |||| | || |||||||| |||||||||| |||||| | TTTCTTGTGG GATTTCAAGG AACACTCCTT CCGAAAATGA TACATTGAGT ACTACTAAAA 482 TGTTCCTCAA ATAGTAATTT TGAAAAAGTT GATGATGGAA AAGACAGGGA AAAAGAGGTG 56453 | |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACATCAA ATAGTAATTT TGAAAAAGTT GATGATGGAA AAGACAGGGA AAAAGAGGTG 542 AAGTTATTTC CAAGGGAATT AGATTTTGAT GAATTACTTG AAGGGGGTGG ATTTTATGAT 56393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTATTTC CAAGGGAATT AGATTTTGAT GAATTACTTG AAGGGGGTGG ATTTTATGAT 602 GAATTTCTTA TGGGAGAAAG CTGCAATTTT TCAAACAAAG TGGAAATGAA TGATAATATG 56333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTCTTA TGGGAGAAAG CTGCAATTTT TCAAACAAAG TGGAAATGAA TGATAATATG 662 GTGGAAAAAG TATATGAAGA ATATCTTCTA CTTCTTTCTG AAATTCAAGA AGATCAAACG 56273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAAAAAG TATATGAAGA ATATCTTCTA CTTCTTTCTG AAATTCAAGA AGATCAAACG 722 GAGCAAAAAT TCTCAATGTA AGTTTTAGTT TGGATAGGCT TTTTATAAAG TTTGTTGATC 56213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAAAAAT TCTCAATGTA AGTTTTAGTT TGGATAGGCT TTTTATAAAG TTTGTTGATC 782 CGACTAATTC AAATTAACG- AGTAATGTAT ATTTGTTTAG TTTCTA 56168 |||||||||| ||||||||| |||||||||| |||||||||| || ||| CGACTAATTC AAATTAACGA AGTAATGTAT ATTTGTTTAG TTGCTA 828 hqPGS_C08SLm0006K11.1-_SGN-U337164- (56688 56168) ******************************************************************************** EST sequence 24 +strand 932 n (File: SGN-U316418+) 1 GATCGAACCC ACCGGCTATA GGCTCGTCGT TTCATATTCC TTTGATCAAT AATATACTTT 61 GAACTTCAAT ATTTTTCATC TTCAAATCAA ATTTGGGCGA CGAAAGCTCC ATTTTTTTTA 121 ACATCTTCCT ATACATTGGA TCTTACTTTC ATTGAATTTT CAAGAATTTA TTGTATGGCA 181 AATTATTATG TAACGGCGGT TCCGCCGACG GATCTGAATC GGAATACCGA GTGGTTCACG 241 TATCCCGGTG TATGGACGAC CTACATCCTA ATTCTATTCT TCTCATGGCT CGTTGTTCTC 301 TCTGTATTTG GTTGCTCTCC TGGCATGGCT TGGACCATCG TCCATCTTTC TCATTTTCTC 361 GTCACATATC AATGTTTTCA CTGGAAGAAG GGAACACCAT TTGCTGATGA TCAAGGTATC 421 TACAATAGGT TGACTTGGTG GGAGCAGATA GATAGTGGGA AGCAGCTTAC ACGCAATAGG 481 AAGTTTCTAA CAGTTGTCCC TGTGGTGCTC TACTTGATAG CCTCCCATAC AACTGATTAT 541 CAACACCCCA TGCTATTCTT CAACACTATC GCAGTTTTTG TACTGGTCGT TGCCAAATTT 601 CCCAATATGC ACAAGGTTCG TATTTTCGGG ATAAATGCAG ATCAATGAAC TTTGGTTCAA 661 CTGAAGTCAT ACCACAGAAA GAAGGAAAAA GAAAAGTAGT CATTGATTTG CTTTTAAGCA 721 TCATGAGTAA AACTGGGATG CCCCTGTACA GATGCAAGAA CTGGAAAGGG TTTATCATTA 781 TTTTGTAAAA GAAATCTCTT TGTGGATAAT CTTTTCTTGT AAAAACTGTT TGTATGAGAA 841 TGCTGGAATA TCGATTGAGT TATGATATTT TTCACGTTAC AACTCAAAAA AAAAAAAAAA 901 AAAAAAAAAA AAAAAAAAAA AAAAAAACTC GA Predicted gene structure (within gDNA segment 63608 to 56098): Exon 1 63008 62649 ( 360 n); cDNA 1 360 ( 360 n); score: 1.000 Intron 1 62648 61375 (1274 n); Pd: 0.960 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 61374 61263 ( 112 n); cDNA 361 472 ( 112 n); score: 1.000 PPA cDNA 886 928 MATCH C08SLm0006K11.1- SGN-U316418+ 1.000 472 0.506 C PGS_C08SLm0006K11.1-_SGN-U316418+ (63008 62649,61374 61263) Alignment (genomic DNA sequence = upper lines): GATCGAACCC ACCGGCTATA GGCTCGTCGT TTCATATTCC TTTGATCAAT AATATACTTT 62949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAACCC ACCGGCTATA GGCTCGTCGT TTCATATTCC TTTGATCAAT AATATACTTT 60 GAACTTCAAT ATTTTTCATC TTCAAATCAA ATTTGGGCGA CGAAAGCTCC ATTTTTTTTA 62889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTCAAT ATTTTTCATC TTCAAATCAA ATTTGGGCGA CGAAAGCTCC ATTTTTTTTA 120 ACATCTTCCT ATACATTGGA TCTTACTTTC ATTGAATTTT CAAGAATTTA TTGTATGGCA 62829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCTTCCT ATACATTGGA TCTTACTTTC ATTGAATTTT CAAGAATTTA TTGTATGGCA 180 AATTATTATG TAACGGCGGT TCCGCCGACG GATCTGAATC GGAATACCGA GTGGTTCACG 62769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATTATG TAACGGCGGT TCCGCCGACG GATCTGAATC GGAATACCGA GTGGTTCACG 240 TATCCCGGTG TATGGACGAC CTACATCCTA ATTCTATTCT TCTCATGGCT CGTTGTTCTC 62709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCCGGTG TATGGACGAC CTACATCCTA ATTCTATTCT TCTCATGGCT CGTTGTTCTC 300 TCTGTATTTG GTTGCTCTCC TGGCATGGCT TGGACCATCG TCCATCTTTC TCATTTTCTC 62649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTATTTG GTTGCTCTCC TGGCATGGCT TGGACCATCG TCCATCTTTC TCATTTTCTC 360 GTATGATTCT AATTTCCTTT AATTCGGTTG GAATTGAGTA GTTCTTTGCA GTTAAATAAT 62589 .......... .......... .......... .......... .......... .......... 360 GATGGGTTGC TTTAAACTCG TCAAATTTTG ATAAAATTAT AATCAAGTTC AGTTTTTTTT 62529 .......... .......... .......... .......... .......... .......... 360 TGGTTTAAAT GGGTCTGATT AGAGGAATAG CAGTTTAAAT GTTTGGTTGA TTGATATTCT 62469 .......... .......... .......... .......... .......... .......... 360 TATGATTACA TGCCTAGTTC GTTTAGTGTT TCCTGTGTTT TTGGTACTAT GGAATTTGGA 62409 .......... .......... .......... .......... .......... .......... 360 GACTCAATTT GGAATTGATT TGAGCTAGGT TCAGCTTTGG GTCATTGATC ATTTCCTTAT 62349 .......... .......... .......... .......... .......... .......... 360 GTTCAATTTG GAAGTGAGAG ATTCTGGGGT TGTAGCTGAA AAAGTGGTGA ATTGAAATTC 62289 .......... .......... .......... .......... .......... .......... 360 TTTTAGTACT AGTCTTGATT CCTAGATATG GTGGAAAATA TTACAGCTGA GCTTTACCTT 62229 .......... .......... .......... .......... .......... .......... 360 GTGTGATTGA TTGTTGATTT AAGGCCTAGA TAGTTGGACA TGCCGAATGT ATCGAAAGCT 62169 .......... .......... .......... .......... .......... .......... 360 ATGGCCTTTT TGGTGTCTAA TATATTTGGT TTTTCCATTT CAATCAAACT TCACTAGACA 62109 .......... .......... .......... .......... .......... .......... 360 TTATTGCTGT AGTCTCATAT TTGTTGAAGG TATCCTATTA GGATGGAGAT TAGCCAAGGT 62049 .......... .......... .......... .......... .......... .......... 360 TCCTATATTG GTCGACATCT CGCGTTATAG TGTCTTTATA TTGGTTTCGA GAACTTTTTC 61989 .......... .......... .......... .......... .......... .......... 360 CACTTGAACT AGTTTTTGGA GTTTAGTTGG ATTCAAGACC ATTTTCATGA CAATTATGAT 61929 .......... .......... .......... .......... .......... .......... 360 GTTTGCTGGA TGTTCCTTGT TATTTCGTTA TTTGATCACT AGCATACAGA GAAACAAGTA 61869 .......... .......... .......... .......... .......... .......... 360 CATTTGAAAC ATGGGAGATT TTTGCAGATG TGGATGGTTA GTACTTCTAT TGAGATTGAT 61809 .......... .......... .......... .......... .......... .......... 360 AATGTGAAAG CTTGATTATA TCTATTACCT TTTTTTTGCG TCTTTTAACT CATTCTTGCA 61749 .......... .......... .......... .......... .......... .......... 360 ATGCTTTGCC CGTCTCATGT GTTTTTTTAG CAATTAACTA TTACAGTTTA CCTATGTTGT 61689 .......... .......... .......... .......... .......... .......... 360 ATGCCCTGAA AAATGTCTGT ATGCATAATT CTTAGGCTTA TCGAATAGTC GAGGTCTAGT 61629 .......... .......... .......... .......... .......... .......... 360 TGATGAGCTT TATCTTCCTC TTTGTACCAA TTTTTTTGTT TTGTGTTTTT TTTCTGTCCT 61569 .......... .......... .......... .......... .......... .......... 360 TTGTGTTATA GCATGGGAGG AAACCTTGTT TATATATCTA CTCTGGATTT TACCTCTTTG 61509 .......... .......... .......... .......... .......... .......... 360 TGTAAGACTC TGCCTTCTCT ATAAATATGC ATTTCTTATA TCAATAATTT CCACTGGAAG 61449 .......... .......... .......... .......... .......... .......... 360 AAGGGAACAC AATTGTACAT ACTCCAAATT TTAGGTGTCT TTACAAACGC CTTCGTATTG 61389 .......... .......... .......... .......... .......... .......... 360 TCATTTATCT TCAGGTCACA TATCAATGTT TTCACTGGAA GAAGGGAACA CCATTTGCTG 61329 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTCACA TATCAATGTT TTCACTGGAA GAAGGGAACA CCATTTGCTG 406 ATGATCAAGG TATCTACAAT AGGTTGACTT GGTGGGAGCA GATAGATAGT GGGAAGCAGC 61269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATCAAGG TATCTACAAT AGGTTGACTT GGTGGGAGCA GATAGATAGT GGGAAGCAGC 466 TTACAC 61263 |||||| TTACAC 472 hqPGS_C08SLm0006K11.1-_SGN-U316418+ (63008 62649,61374 61263) ******************************************************************************** EST sequence 8 -strand 892 n (File: SGN-U335658-) 1 AGCAGGGAGG AAACCTTGTT AAATATCTAC TCGGGATTTA CCTCTTTGTG TAAGACTCTG 61 CCTCTCTTAT AATNATGCAT TTCTTATATC AATATTTTCC ACTGGAGAAG GGGAACACAA 121 TTGTACATAC TCCAAATTTT AGGTGTCTTT ACAAACGCCT TCGTATGTCA TTTTATCTTC 181 AGGTCACATA TCAATGTTTT CACTGGAAGA AGGGAACACC ATTTGCTGAT GATCAAGGTA 241 TCTACAATAG GTTGACTTGG TGGGAGCAGA TAGATAGTGG GAAGCAGCTT ACACGCAATA 301 GGAAGTTTCT AACAGTTGTC CCTGTGGTGC TGTAAGTAGT CAATTTCAGC AAGTTGATTG 361 CTATTTACAA TATTAATGCT ATGAACAAAT TTCCTGCTTT CAAGTGTAGT CGATGTGCAT 421 ATGATCTCAC CAACTGGCTT GAAAAAGCTT CTAAATTTCA CCATGATGCA CTTTACAACA 481 CAGGTTCTGA TTATGGTAGA GTATATATAT TAGAGGGCAT AATGCTCTTA AGCCATGATT 541 TTGTAGGTTT GATTACTGAA CTTTTCCAAT CGTTCATTTT ATACGACACT ATTCTCATTT 601 GGGAAGTTAA CAATTACCGG TCCAAGAAGT CAGAAAATAG ATGTAGTAGC TAGCTAGACA 661 AAAATTATCA TGGATCACTC ACAAATCAAT GTTATTAGCA TTCCATTTAT GCATAACTTC 721 CATGGTTAAT GATATTAGTC CAAGTGTTAA TTGCACAAGC TTGCTTTCTG TATCTTCTTG 781 ATGTCATTTA GTGGAACTCC CTTACTAAAT CAAAAAAATA AGAAGCTAGT TTGTGTTTAA 841 TTCTTTATCA AAAAAAAAAA AAAAAAAACT CGAGGGGGGC CCGTACCCAA TC Predicted gene structure (within gDNA segment 62204 to 54128): Exon 1 61554 61263 ( 292 n); cDNA 5 294 ( 290 n); score: 0.940 Intron 1 61262 55190 (6073 n); Pd: 0.677 (s: 1.00), Pa: 0.904 (s: 0) Exon 2 55189 55185 ( 5 n); cDNA 295 299 ( 5 n); score: 0.600 PPA cDNA 850 869 MATCH C08SLm0006K11.1- SGN-U335658- 0.940 297 0.333 C PGS_C08SLm0006K11.1-_SGN-U335658- (61554 61263,55189 55185) Alignment (genomic DNA sequence = upper lines): GGGAGGAAAC CTTGTTTATA TATCTACTCT GGATTTTACC TCTTTGTGTA AGACTCTGCC 61495 |||||||||| |||| ||| | ||||||||| ||| |||||| |||||||||| |||||||||| GGGAGGAAAC CTTG-TTAAA TATCTACTCG GGA-TTTACC TCTTTGTGTA AGACTCTGCC 62 TTCTCTATAA ATATGCATTT CTTATATCAA TAATTTCCAC TGGAAGAAGG GAACACAATT 61435 | ||||| |||||||| |||||||||| || ||||||| |||| | || |||||||||| TCTCTTATAA TNATGCATTT CTTATATCAA TATTTTCCAC TGGAGAAGGG GAACACAATT 122 GTACATACTC CAAATTTTAG GTGTCTTTAC AAACGCCTTC GTATTGTCA- TTTATCTTCA 61376 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| GTACATACTC CAAATTTTAG GTGTCTTTAC AAACGCCTTC GTA-TGTCAT TTTATCTTCA 181 GGTCACATAT CAATGTTTTC ACTGGAAGAA GGGAACACCA TTTGCTGATG ATCAAGGTAT 61316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCACATAT CAATGTTTTC ACTGGAAGAA GGGAACACCA TTTGCTGATG ATCAAGGTAT 241 CTACAATAGG TTGACTTGGT GGGAGCAGAT AGATAGTGGG AAGCAGCTTA CACGCAATTC 61256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CTACAATAGG TTGACTTGGT GGGAGCAGAT AGATAGTGGG AAGCAGCTTA CAC....... 294 CCTCTCTCCG AAATTATGTT TCGCTTCTCA AAAAGTCTAG TGTTTAATCC TGTTAAATTA 61196 .......... .......... .......... .......... .......... .......... 294 AGTTATATAT TAATTAAAAT TCACATAAAA TTTGACAAAT AATTTGAAAT AATAAACTGT 61136 .......... .......... .......... .......... .......... .......... 294 TCAGTTTGAT TCAAATTTAG ATCCACGACA AAATTATTGT AAGTGAGAAG ATTTTGTGGC 61076 .......... .......... .......... .......... .......... .......... 294 TATGTCATAT CAAAAGAGTC CAAAAATTCT TCTTAGATAA TTTTCACTAA TGTCCATAAT 61016 .......... .......... .......... .......... .......... .......... 294 TTATGTTGTC CTCACTTAAA TCAAATCATT GCCTGAATCA TCGTATGTGT TAGGCTTGTC 60956 .......... .......... .......... .......... .......... .......... 294 TACATGTTTT AATTTGGTTT ATTAATATAT AATACCTGTT TAAGCCTATT ACTCCTAAGT 60896 .......... .......... .......... .......... .......... .......... 294 CCTAATAAAG TGATCTAATA GACATCATTT CAAGTTCCCA ATTTTTTTTT TACCCATATT 60836 .......... .......... .......... .......... .......... .......... 294 ACATAATTAA GTTAACTATA TCAAATATGA CATGGCACAT ATAATTATAT CAACCTACGT 60776 .......... .......... .......... .......... .......... .......... 294 AGAAAACACC TTAGAGGTTT AAGTGAATGC AAATAATTAA TTAAAAAAAC GGATTCAAGT 60716 .......... .......... .......... .......... .......... .......... 294 AATTATTGAT GATATATGGT GTTAGCAATT CAAGTTGGGT TTGGTACAAA AAGAAAATAT 60656 .......... .......... .......... .......... .......... .......... 294 TTTGCACTAA AGATATTCTT TCTTTTTATT CATTTTAACA ATTCTAAAAG TATTTATATA 60596 .......... .......... .......... .......... .......... .......... 294 TAATATAGAT AGATATTATC ATAGGTTTAC TGGAGGTTAC AAGTATTAGG GTGAATCTCA 60536 .......... .......... .......... .......... .......... .......... 294 CTGGTAAAAT CTATTTTGCT TACTTTTATT AGAAAAATCA TTTTTTAAAA ACTTTATTTT 60476 .......... .......... .......... .......... .......... .......... 294 TTTAAAAAAA AATTTATCAA ACAAATAATA AAAATTCACC TTTCGAACAC ACGGCGGCTA 60416 .......... .......... .......... .......... .......... .......... 294 AGAGGGGAAT AAGCTCTAGA AAAAATCAAA TACTAAGAAC AACAAAATCC AAAAAATAAA 60356 .......... .......... .......... .......... .......... .......... 294 ACAAAGGAAA TATATTATTG TTTTTTAAAA TAAGGTCACA TGATTTACTA CTAATCATTA 60296 .......... .......... .......... .......... .......... .......... 294 TGATTCTGAA TATAGTTGGT ATATATAAAG TTATAGTAAT ATATATATAT ATATATATTC 60236 .......... .......... .......... .......... .......... .......... 294 ATAGACTGGA TCTAGTCATC CTACAGATTC AAAAAGTTAC TATAAAAATA ATATTTCCCT 60176 .......... .......... .......... .......... .......... .......... 294 GACCTACCAA TAGGATACAT TTTTGTTAGT CCACAACGTC TAATCATGGT TTCATTTGAT 60116 .......... .......... .......... .......... .......... .......... 294 CTGAATAAAC CAATGAAAAA AATTTGGAAT AAGAAATTAT CGTTAACGGT AATTCCAGTC 60056 .......... .......... .......... .......... .......... .......... 294 GGTGATACGT ATCGTTTGTT GTTCTTTGAG CTCGCTAATA TCAAGCTCAA AAATACGTAT 59996 .......... .......... .......... .......... .......... .......... 294 ATTACGTGAA ATTATATTTT TTTTCTAAAA TATTATTGGT GTAAAAATTT ATTAGTTTAG 59936 .......... .......... .......... .......... .......... .......... 294 CGATTCTAAT CATTGACCAA CCCTGTTAAA CCCTAGCATT CTACTGCTGG AGTCCAACTT 59876 .......... .......... .......... .......... .......... .......... 294 TGATTTGATA TTTGTAGCAG TCCAAACTCG TATTATGTAA TTTTGGCTCA ATAATTCTTA 59816 .......... .......... .......... .......... .......... .......... 294 TATATAATAG TTCTTAAATT ACGTGATAAT TTAATTCAAA TAAAAACATA TGTGTTACTG 59756 .......... .......... .......... .......... .......... .......... 294 TCATTACTAG CTTACGATTT ACCTTTTTAA CTTATCCTCA TCAATTCGCT CTCTATCATG 59696 .......... .......... .......... .......... .......... .......... 294 TGATAAATTC TGATCCAACG ATTCTCCAAA TCTTTAAATA ATAACAATGC GATCCATGGT 59636 .......... .......... .......... .......... .......... .......... 294 ACGTCGCATT CTTTGTGTAC TAATTTTGTC TGTCCATTAC ATTGAACTTA TAGGTTAAAT 59576 .......... .......... .......... .......... .......... .......... 294 TTTTCTTTTT TTTTACACTG GTTAAATTAA CATGTTTTTT TGTTTAATAA TAGCACATGC 59516 .......... .......... .......... .......... .......... .......... 294 ATGCACGTGG ATGAATTTGG GTCCAATTTG GTACCATAAA TTTGGATTTT GTAACTGTTG 59456 .......... .......... .......... .......... .......... .......... 294 GGTTTGTTGA CAAATAAAAA AGCCCAAGCC ATTTCAAAAC ACGTTTTATT TTTTATTATA 59396 .......... .......... .......... .......... .......... .......... 294 AAGATCCAAA ATATAAAATC CAAAAACTAC AAAAAATAAA TTAAAACAGC TATTTTCACT 59336 .......... .......... .......... .......... .......... .......... 294 TCAAATTACT CATAAAAAAT CAGTTTTATT TATTTTACAG TTAAACACAA CATAAATATA 59276 .......... .......... .......... .......... .......... .......... 294 TCACATACAG ATCAAGTTGT CCATTTTAGA TTAATAAAAT AAATAAATAA AAACTGCCAC 59216 .......... .......... .......... .......... .......... .......... 294 AATTAAAATA TTTTACTGAA GTTGACACAT GTTGGGTATC AGAGGTGGAT CAGATTCTCT 59156 .......... .......... .......... .......... .......... .......... 294 GTTTATACAA CTACCTTCTT TACTACTTTT ATATTGTTCA AAATTTTTTG AAAGTTAAAA 59096 .......... .......... .......... .......... .......... .......... 294 GTGATATTTT ATAATATTAA ATTTTTAATT TTTTTAAATT ATTATGATTT ATAATATTTT 59036 .......... .......... .......... .......... .......... .......... 294 TTTCATGGTA ATATCATGTA TTCAATTTTG TTTCAATTTT TTTTAAAAAA ATTATGTTCG 58976 .......... .......... .......... .......... .......... .......... 294 AATACACGAT AAGAATATGT TATCATATAA ATTGAAAGAA AAAAATATTT TTTGTTAATC 58916 .......... .......... .......... .......... .......... .......... 294 ACAAAATATG GTGAAATGAT TAAAATTTCT GCATCTTTAG TCGAGATTCA AAATTTCTCC 58856 .......... .......... .......... .......... .......... .......... 294 ACCTTTAATA TGACGTGAAC ATGTCATCTC AATTTTTAAA TGGATTGACT CAAAAGAGAA 58796 .......... .......... .......... .......... .......... .......... 294 AGACGATAAA TTCATTAAAT TTTGAAATAA AAAAGAATTA AGTGTGATTT CAAGCGTTTA 58736 .......... .......... .......... .......... .......... .......... 294 TTAGATATTA AACTTTCACA TGTAAAAGAC AATAGATTTT TTTTAATGAT ATACATCAAT 58676 .......... .......... .......... .......... .......... .......... 294 ATTAATTAGA AAACATTTGA GTTTTAAAGT TTGTTAAGGT GAATGCCTAT GATTAAACGA 58616 .......... .......... .......... .......... .......... .......... 294 GATGATATAA TACTAAATAG TTAATTCATC TGCACTTCTT TCCATGTTAT TTAATTCGAC 58556 .......... .......... .......... .......... .......... .......... 294 ATATTCTTTA AAAAAAGATT AAAAACATAA TGATAATTTT ACCTTATCAC TCATTACTAT 58496 .......... .......... .......... .......... .......... .......... 294 ATATGAGTCA TATAAATATT AAAAATAATT AATATTTAAT AATAAAAATA AAATAATAAA 58436 .......... .......... .......... .......... .......... .......... 294 TTATATATAT TTTTTTAACT AAACTAGTAA AAATGACCCT TTTTTTTATA CGATAGACTA 58376 .......... .......... .......... .......... .......... .......... 294 TTTTTTGGCT AGCATGTGAT TGGCGCTCTA CAAAGAAATG TATTTTTTGA AAAAGGTGTA 58316 .......... .......... .......... .......... .......... .......... 294 CGACATAATA ATTGAATGTA AGTTTTCAAT TAATAAGAAA CAACTTGATC GCACTGTCCT 58256 .......... .......... .......... .......... .......... .......... 294 TTACTTTTCT ATTAGTTTCT CCCTTGCTAT AAATAATAAA TATTGATAAG TGTTAGTTTT 58196 .......... .......... .......... .......... .......... .......... 294 TGGAAACGAG TACTTTCTTT CAATTGGAGC TTTACGTGGT GTAAAGTAAT ATAAATAAAT 58136 .......... .......... .......... .......... .......... .......... 294 TTTAATATAA ATTTCAGACA CTAGATAAAA ATAATTAAAA AGAATAAGTG TTAAAATTAT 58076 .......... .......... .......... .......... .......... .......... 294 ATATATCGTT AGTATTAAAA AAGTTATGAT ATCATCTAAG GTGTCTTTAA ATGAGTTTGT 58016 .......... .......... .......... .......... .......... .......... 294 AGTCATGCAT ATAGTTATTT AATAAGTACG GCGAATAAAA ATGATTTTGA TGATGTTAAC 57956 .......... .......... .......... .......... .......... .......... 294 AGCTATTTAT ATTAATGAAA TAGTGTTTAC TATTTAAATT CTATTCATAC TACAATAATT 57896 .......... .......... .......... .......... .......... .......... 294 ATAAGGATGT AAGTTATATA TACATATTAT TATTCATTAT GAATCAATTA AAAATTTATA 57836 .......... .......... .......... .......... .......... .......... 294 CTATAAAATA TGATTTTTTT CACCTAACGA GCTCAGTGGA GAAACACATG ATCACTGAAA 57776 .......... .......... .......... .......... .......... .......... 294 TATTAAAAAA ACTTGCTAAT GTTATTGTGT TAAAATACTA CTATTTTTTC TTTTCTTACC 57716 .......... .......... .......... .......... .......... .......... 294 TATTAAATCA ATTTATTTGA ATGATTTTAA CTAATATTGT CAATAAACAT GAGTTTAGAT 57656 .......... .......... .......... .......... .......... .......... 294 TAATGAAATA CTCTTTTGGT TATAATTTGT TTTTTTTCCA GTTAGTTGTC AATGAAATTA 57596 .......... .......... .......... .......... .......... .......... 294 TTTATAATCG CACAAATACG TATATCTTAT TTTAAATCAT AAATTTCAAG ATAAATAAAT 57536 .......... .......... .......... .......... .......... .......... 294 AAATAAAATA TAAAATATCG AGTCAAACAG CATCAACGAT ATTCTATAAT AATAATGCTT 57476 .......... .......... .......... .......... .......... .......... 294 TTGTACTTTC AACTTCACGG CTTCGAAAAG ATCACTACCT TTCTCCTAAT TTTTGCATCT 57416 .......... .......... .......... .......... .......... .......... 294 TCTTAGTTCT CTCTGTTCTG AAAATTTTTC TTTAGAAAAA ACACACACAA AAAAAAATAA 57356 .......... .......... .......... .......... .......... .......... 294 AAATGGGAAG AGCACCATGT TGTGCTAAAG AAGGATTGCG TAAAGGGCCA TGGTCTACTA 57296 .......... .......... .......... .......... .......... .......... 294 AAGAAGATTT ATTACTTACT AATTATATCA ATCAATATGG TGAAGGCCAA TGGAGATCTT 57236 .......... .......... .......... .......... .......... .......... 294 TGCCTAAAAA TGCTGGTAAT TTTTCTTTTT TCTAATTCCT TTCTCGATGT TTGATACGAT 57176 .......... .......... .......... .......... .......... .......... 294 ACAAGTTATT TTTAATATAT ATAGTAACAA TAAATTTTAA TTTTCTTCTT TAAAATTTGT 57116 .......... .......... .......... .......... .......... .......... 294 GTGTTTAATA CATTATTGTT ATGAAAATTC TGTTATAGTT CTTGCTCGTT ACGGAATGAA 57056 .......... .......... .......... .......... .......... .......... 294 ATGACTTTTG TTGTACCATA TGTATTTATA TATGAGTGTA TTTATTTTCT TGCTCGTTAG 56996 .......... .......... .......... .......... .......... .......... 294 CGTAATTCTA TGAAAAATAT TTCAGGATTG CTTAGGTGTG GGAAAAGTTG TAGATTAAGA 56936 .......... .......... .......... .......... .......... .......... 294 TGGGTGAATT ATTTAAAGCC AGGGATTAAA AGAGGAAATT TTAGTGAAGA TGAAGAAGAT 56876 .......... .......... .......... .......... .......... .......... 294 CTTATAGTGA GATTACATTC ACTTCTGGGT AATCGTTGGT CATTAATTGC CGGACGATTA 56816 .......... .......... .......... .......... .......... .......... 294 CCTGGTCGAA CAGATAATGA AATCAAGAAT TATTGGAATA CGCATTTGAC CAAGAAGCTC 56756 .......... .......... .......... .......... .......... .......... 294 AGAAGCACAG GAATTGAACC AAAACCCCAC AAGAATTTGA CCAAATTAAA GGAGAAATCA 56696 .......... .......... .......... .......... .......... .......... 294 AGAAAACAAA CCAAAAAGGA GAAATCAAGA AAAGAAGTGG GGAAGAAAAG CAATGATGAG 56636 .......... .......... .......... .......... .......... .......... 294 AAGTTGAAGG GTCAAATTGC ACAAGTTGAG AAGATAAAAG TATTTGCACC AAAGCCCATA 56576 .......... .......... .......... .......... .......... .......... 294 AGGATTTCTT GTGGGATTTC AAGGAACAAT AGTTTTGAAA ATGATACATT GAGTACTACT 56516 .......... .......... .......... .......... .......... .......... 294 ACTTGTTCCT CAAATAGTAA TTTTGAAAAA GTTGATGATG GAAAAGACAG GGAAAAAGAG 56456 .......... .......... .......... .......... .......... .......... 294 GTGAAGTTAT TTCCAAGGGA ATTAGATTTT GATGAATTAC TTGAAGGGGG TGGATTTTAT 56396 .......... .......... .......... .......... .......... .......... 294 GATGAATTTC TTATGGGAGA AAGCTGCAAT TTTTCAAACA AAGTGGAAAT GAATGATAAT 56336 .......... .......... .......... .......... .......... .......... 294 ATGGTGGAAA AAGTATATGA AGAATATCTT CTACTTCTTT CTGAAATTCA AGAAGATCAA 56276 .......... .......... .......... .......... .......... .......... 294 ACGGAGCAAA AATTCTCAAT GTAAGTTTTA GTTTGGATAG GCTTTTTATA AAGTTTGTTG 56216 .......... .......... .......... .......... .......... .......... 294 ATCCGACTAA TTCAAATTAA CGAGTAATGT ATATTTGTTT AGTTTCTACT TTTATAGTTT 56156 .......... .......... .......... .......... .......... .......... 294 TTTTAGCTTT TAGCTCAACT TTTTTGTGTT ATGACTAGAT TTCTGTTGAA GCGATATCGA 56096 .......... .......... .......... .......... .......... .......... 294 AAGTATTATA ATTACGTTAA AACAAAAAAA AGATACATCC TAAACACATA AAAAAAAATC 56036 .......... .......... .......... .......... .......... .......... 294 AAAAGTTATG ATTTAAATTT ACTTGTATGA CCTTATTCGT ATCATCATCT CAAAGTTAAA 55976 .......... .......... .......... .......... .......... .......... 294 TAAAAGAGAG AGTTTGCAAA TATTTAATAT AAAACATCTT AAATCCTTAT AACTTATAAG 55916 .......... .......... .......... .......... .......... .......... 294 ATGTAATATT GATTGATATA GTTGATCGCA AAGTTAAATT AAAAACATTT TAAATCTTCA 55856 .......... .......... .......... .......... .......... .......... 294 TAAAAGATGT ATATTGATGA TATAGTTCAA ACTTAAATGA AGCAATGAGG AGAATTCATT 55796 .......... .......... .......... .......... .......... .......... 294 TCATCCACTA TAATTTATTT GATATTAAAG CGATAAAAAT TATTTTTAAA AAAATGGACC 55736 .......... .......... .......... .......... .......... .......... 294 ACAAAGTTAG GTGGATATCC CCGAAAACAT AGGAATAATA ATAATAATAT CAAAAGGACA 55676 .......... .......... .......... .......... .......... .......... 294 AAGAAATATT TAGCATGTCG ACAAAAGCAT AAAAATGAAT AAAACGTGTG TTCATAAAAA 55616 .......... .......... .......... .......... .......... .......... 294 GAGCAGCCAC AAATCATGGT GCGCTACTTA CAATGAGAGA AAAAATAAGT AAATTTGTCT 55556 .......... .......... .......... .......... .......... .......... 294 CGTGAAGAAG AAACCAAAAG AAATCAAATG CGATAGTGAC ACGCTCAGTA GGAACAAATA 55496 .......... .......... .......... .......... .......... .......... 294 TGTCCAAAGT AAAGACAACA AATAATGTGT AATAATCTCA ACATTATGAA TACACTATAT 55436 .......... .......... .......... .......... .......... .......... 294 CGAGCGATAT TCTTATACAT CATATCAAAC AACCGCGATT CACACAGAGT ACTGTTCCAT 55376 .......... .......... .......... .......... .......... .......... 294 ACCAATCTTC TAAGCTGGCA CGTGACTCGA ACTCTTTTAC TGTTCCATGA TTCCGTACAA 55316 .......... .......... .......... .......... .......... .......... 294 GAATTATGAA TAAGACATAT GTGGTTCACA TGTATGCAGT AACTCTACTT TTTGAGCCAT 55256 .......... .......... .......... .......... .......... .......... 294 TTGGCCCAAT CTTATCCTCT GTCATAATCA GAATAACCAT CTGACTTCAC TTTTCTTCTT 55196 .......... .......... .......... .......... .......... .......... 294 TTTCAGAAAA T 55185 || | ......GCAA T 299 hqPGS_C08SLm0006K11.1-_SGN-U335658- (61554 61263) ******************************************************************************** EST sequence 32 +strand 805 n (File: SGN-U331812+) 1 TTAAACTCGT CAAATTTTGA TAAAATTATA ATCAAGTTCA GTTTTTTTTT GGTTTAAATG 61 GGTCTGATTA GAGGAATAGC AGTTTAAATG TTTGGTTGAT TGATATTCTT ATGATTACAT 121 GCCTAGTTCG TTTAGTGTTT CCTGTGTTTT TGGTACTATG GAATTTGGAG ACTCAATTTG 181 GAATTGATTT GAGCTAGGTT CAGCTTTGGG TCATTGATCA TTTCCTTATG TTCAATTTGG 241 AAGTGAGAGA TTCTGGGGTT GTAGCTGAAA AAGTGGTGAA TTGAAATTCT TTTAGTACTA 301 GTCTTGATTC CTAGATATGG TGGAAAATAT TACAGCTGAG CTTTACCTTG TGTGATTGAT 361 TGTTGATTTA AGGCCTAGAT AGTTGGACAT GCCGAATGTA TCGAAAGCTA TGGCCTTTTT 421 GGTGTCTAAT ATATTTGGTT TTTCCATTTC AATCAAACTT CACTAGACAT TATTGCTGTA 481 GTCTCATATT TGTTGAAGGT ATCCTATTAG GATGGAGATT AGCCAAGGTT CCTATATTGG 541 TCGACATCTC GCGTTATAGT GTCTTTATAT TGGTTTCGAG AACTTTTTCC ACTTGAACTA 601 GTTTTTGGAG TTTAGTTGGA TTCAAGACCA TTTTCATGAC AATTATGATG TTTGCTGGAT 661 GTTCCCTTGT ATTTCGTTAT TTGATCACTA GCATACAGAG AAACAAGTAC ATTTGAAACA 721 TGGGAGATTT TTGCAGATGT GGATGGGTAG TACTTCTATT TGAGATGATA ATGTGAAAGC 781 TTTGATATAT CTATTACCTT TTTTT Predicted gene structure (within gDNA segment 63177 to 61163): Exon 1 62577 61773 ( 805 n); cDNA 1 805 ( 805 n); score: 0.987 MATCH C08SLm0006K11.1- SGN-U331812+ 0.987 805 1.000 C PGS_C08SLm0006K11.1-_SGN-U331812+ (62577 61773) Alignment (genomic DNA sequence = upper lines): TTAAACTCGT CAAATTTTGA TAAAATTATA ATCAAGTTCA GTTTTTTTTT GGTTTAAATG 62518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAACTCGT CAAATTTTGA TAAAATTATA ATCAAGTTCA GTTTTTTTTT GGTTTAAATG 60 GGTCTGATTA GAGGAATAGC AGTTTAAATG TTTGGTTGAT TGATATTCTT ATGATTACAT 62458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTGATTA GAGGAATAGC AGTTTAAATG TTTGGTTGAT TGATATTCTT ATGATTACAT 120 GCCTAGTTCG TTTAGTGTTT CCTGTGTTTT TGGTACTATG GAATTTGGAG ACTCAATTTG 62398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTAGTTCG TTTAGTGTTT CCTGTGTTTT TGGTACTATG GAATTTGGAG ACTCAATTTG 180 GAATTGATTT GAGCTAGGTT CAGCTTTGGG TCATTGATCA TTTCCTTATG TTCAATTTGG 62338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGATTT GAGCTAGGTT CAGCTTTGGG TCATTGATCA TTTCCTTATG TTCAATTTGG 240 AAGTGAGAGA TTCTGGGGTT GTAGCTGAAA AAGTGGTGAA TTGAAATTCT TTTAGTACTA 62278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGAGAGA TTCTGGGGTT GTAGCTGAAA AAGTGGTGAA TTGAAATTCT TTTAGTACTA 300 GTCTTGATTC CTAGATATGG TGGAAAATAT TACAGCTGAG CTTTACCTTG TGTGATTGAT 62218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTGATTC CTAGATATGG TGGAAAATAT TACAGCTGAG CTTTACCTTG TGTGATTGAT 360 TGTTGATTTA AGGCCTAGAT AGTTGGACAT GCCGAATGTA TCGAAAGCTA TGGCCTTTTT 62158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGATTTA AGGCCTAGAT AGTTGGACAT GCCGAATGTA TCGAAAGCTA TGGCCTTTTT 420 GGTGTCTAAT ATATTTGGTT TTTCCATTTC AATCAAACTT CACTAGACAT TATTGCTGTA 62098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTCTAAT ATATTTGGTT TTTCCATTTC AATCAAACTT CACTAGACAT TATTGCTGTA 480 GTCTCATATT TGTTGAAGGT ATCCTATTAG GATGGAGATT AGCCAAGGTT CCTATATTGG 62038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCATATT TGTTGAAGGT ATCCTATTAG GATGGAGATT AGCCAAGGTT CCTATATTGG 540 TCGACATCTC GCGTTATAGT GTCTTTATAT TGGTTTCGAG AACTTTTTCC ACTTGAACTA 61978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGACATCTC GCGTTATAGT GTCTTTATAT TGGTTTCGAG AACTTTTTCC ACTTGAACTA 600 GTTTTTGGAG TTTAGTTGGA TTCAAGACCA TTTTCATGAC AATTATGATG TTTGCTGGAT 61918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGGAG TTTAGTTGGA TTCAAGACCA TTTTCATGAC AATTATGATG TTTGCTGGAT 660 GTTCCTTGTT ATTTCGTTAT TTGATCACTA GCATACAGAG AAACAAGTAC ATTTGAAACA 61858 ||||| | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCCTTGT ATTTCGTTAT TTGATCACTA GCATACAGAG AAACAAGTAC ATTTGAAACA 720 TGGGAGATTT TTGCAGATGT GGATGGTTAG TACTTCTA-T TGAGATTGAT AATGTGAAAG 61799 |||||||||| |||||||||| |||||| ||| |||||||| | ||||| |||| |||||||||| TGGGAGATTT TTGCAGATGT GGATGGGTAG TACTTCTATT TGAGA-TGAT AATGTGAAAG 779 CTTGATTATA TCTATTACCT TTTTTT 61773 ||| |||| |||||||||| |||||| CTTTGATATA TCTATTACCT TTTTTT 805 hqPGS_C08SLm0006K11.1-_SGN-U331812+ (62577 61773) ******************************************************************************** EST sequence 22 -strand 790 n (File: SGN-U333240-) 1 TGAACATGGC TCACGAGAGA GTATCAACGA TCATCATCGG TGCTTCCTTG TGTGTATTTA 61 CAAGCATTCT CATATTTCCC ATATGGGCTG GTGAAGAGCT CCATAAACTT GTCATTAGTA 121 ACTTGGAAAA GCTAGCAGAG TCCTTAGATT GTTGTGTAGC TGAATTTTTT AGCGACAGTG 181 AAGACACAAC AACAAATACT AAAAAAATGC TAGCTTTCAA GTGTGTGTTG AATTCAAAGG 241 CCTCTGAAGA GACAATGGCC AACTTTGCTA GATGGGAGCC TGCTCATGGA CTTTTCAACT 301 TTCAACATCC ATGGGGAAAG TACCTTAAGA TCAGCGCGTC AATGCGTAGT TGTGCCTGTT 361 GCATTGAGGC ACTTACAAGC TGCATCAATC AAAAGATCAG GCTTCTGAGT TGTTAAAGAA 421 TGAGCTTACT AACACTTGCC AACAAGTAAG TTCAAGTACA AGTGAGATAC TGAAAGAGTT 481 AGCTTTAAAC ATGAAAACAA TGAGAAAATC CTCCAGGATG GATATCTTAC TACAAGAAAA 541 GAGTAACGCG ATTCAAGAAC TAGAAACTCT GATGGAACAA CTTTCAGGAT TGCTTTTTAT 601 ACAGCCAAAG AATGATCAAG AAAAGCCAGT TATAAGAACC AGTAGTACTA ATGTTATCCC 661 TCTTGTTGAA ATCATACCAA CTGCAACATT TGCTTCTTTA GTGATCGAAA TTGCCACGAG 721 GATCGAAGGG GTTGTTGATG GTGTTGAAGA ATTATCAAAA TTGGCAAAAT TCAAACTTGA 781 GGATGCTGAT Predicted gene structure (within gDNA segment 80059 to 82418): Exon 1 80669 80818 ( 150 n); cDNA 1 150 ( 150 n); score: 0.987 Intron 1 80819 80906 ( 88 n); Pd: 0.912 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 2 80907 81013 ( 107 n); cDNA 151 257 ( 107 n); score: 1.000 Intron 2 81014 81202 ( 189 n); Pd: 0.998 (s: 1.00), Pa: 0.851 (s: 1.00) Exon 3 81203 81346 ( 144 n); cDNA 258 400 ( 143 n); score: 0.993 Intron 3 81347 81428 ( 82 n); Pd: 0.977 (s: 0.98), Pa: 0.849 (s: 1.00) Exon 4 81429 81818 ( 390 n); cDNA 401 790 ( 390 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-U333240- 0.996 791 1.001 C PGS_C08SLm0006K11.1+_SGN-U333240- (80669 80818,80907 81013,81203 81346,81429 81818) Alignment (genomic DNA sequence = upper lines): TGAACATGGC TCACGAGAGA GTATCAACGA TCATCATCGG TGCTTCCTTG TGTGTTATTA 80728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| TGAACATGGC TCACGAGAGA GTATCAACGA TCATCATCGG TGCTTCCTTG TGTGTATTTA 60 CAAGCATTCT CATATTTCCC ATATGGGCTG GTGAAGAGCT CCATAAACTT GTCATTAGTA 80788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCATTCT CATATTTCCC ATATGGGCTG GTGAAGAGCT CCATAAACTT GTCATTAGTA 120 ACTTGGAAAA GCTAGCAGAG TCCTTAGATT GTAAGTATTT CTTGCCTAAA ATTTGGATAT 80848 |||||||||| |||||||||| |||||||||| ACTTGGAAAA GCTAGCAGAG TCCTTAGATT .......... .......... .......... 150 CAGTAACAAA ATTTCATCAT ATATTGTTTT TAAAGTTGAT CCTCAATTGT CCTTTTAGGT 80908 || .......... .......... .......... .......... .......... ........GT 152 TGTGTAGCTG AATTTTTTAG CGACAGTGAA GACACAACAA CAAATACTAA AAAAATGCTA 80968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTAGCTG AATTTTTTAG CGACAGTGAA GACACAACAA CAAATACTAA AAAAATGCTA 212 GCTTTCAAGT GTGTGTTGAA TTCAAAGGCC TCTGAAGAGA CAATGGTAAG TTTTTGCCAA 81028 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCTTTCAAGT GTGTGTTGAA TTCAAAGGCC TCTGAAGAGA CAATG..... .......... 257 TATCAATATA AGCTATGTTA CTCGGACTCT TTAAAATACC GTTGGGTGAG TGTCAGATCT 81088 .......... .......... .......... .......... .......... .......... 257 TCCAAAGGTA GTGCGTGGAT TTGTGGCACC GACTCATTTT TTGCTTCAAA ATTGATCCAA 81148 .......... .......... .......... .......... .......... .......... 257 ATAACCCCAA AACAACTTCA AATTTTACTG ATATAACATG GAATTATCTG CTAGGCCAAC 81208 |||||| .......... .......... .......... .......... .......... ....GCCAAC 263 TTTGCTAGAT GGGAGCCTGC TCATGGACTT TTCAACTTTC AACATCCATG GGGAAAGTAC 81268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTAGAT GGGAGCCTGC TCATGGACTT TTCAACTTTC AACATCCATG GGGAAAGTAC 323 CTTAAGATCA GCGCGTCAAT GCGTAGTTGT GCCTGTTGCA TTGAGGCACT TACAAGCTGC 81328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAAGATCA GCGCGTCAAT GCGTAGTTGT GCCTGTTGCA TTGAGGCACT TACAAGCTGC 383 ATCAATCAAA AAGATCAGGT CGGCTAAATT CTTAATTCTA CTAAAAAATT ATACAAACTC 81388 ||||||| || |||||||| ATCAATC-AA AAGATCAG.. .......... .......... .......... .......... 400 TTTAACTAAC TAAAAGGCAA AAAATTTCAT TGTGTTATAG GCTTCTGAGT TGTTAAAGAA 81448 |||||||||| |||||||||| .......... .......... .......... .......... GCTTCTGAGT TGTTAAAGAA 420 TGAGCTTACT AACACTTGCC AACAAGTAAG TTCAAGTACA AGTGAGATAC TGAAAGAGTT 81508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCTTACT AACACTTGCC AACAAGTAAG TTCAAGTACA AGTGAGATAC TGAAAGAGTT 480 AGCTTTAAAC ATGAAAACAA TGAGAAAATC CTCCAGGATG GATATCTTAC TACAAGAAAA 81568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTAAAC ATGAAAACAA TGAGAAAATC CTCCAGGATG GATATCTTAC TACAAGAAAA 540 GAGTAACGCG ATTCAAGAAC TAGAAACTCT GATGGAACAA CTTTCAGGAT TGCTTTTTAT 81628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTAACGCG ATTCAAGAAC TAGAAACTCT GATGGAACAA CTTTCAGGAT TGCTTTTTAT 600 ACAGCCAAAG AATGATCAAG AAAAGCCAGT TATAAGAACC AGTAGTACTA ATGTTATCCC 81688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCCAAAG AATGATCAAG AAAAGCCAGT TATAAGAACC AGTAGTACTA ATGTTATCCC 660 TCTTGTTGAA ATCATACCAA CTGCAACATT TGCTTCTTTA GTGATCGAAA TTGCCACGAG 81748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTTGAA ATCATACCAA CTGCAACATT TGCTTCTTTA GTGATCGAAA TTGCCACGAG 720 GATCGAAGGG GTTGTTGATG GTGTTGAAGA ATTATCAAAA TTGGCAAAAT TCAAACTTGA 81808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAAGGG GTTGTTGATG GTGTTGAAGA ATTATCAAAA TTGGCAAAAT TCAAACTTGA 780 GGATGCTGAT 81818 |||||||||| GGATGCTGAT 790 hqPGS_C08SLm0006K11.1+_SGN-U333240- (80669 80818,80907 81013,81203 81346,81429 81818) ******************************************************************************** EST sequence 7 +strand 2089 n (File: SGN-U315404+) 1 ATTTTTGATT ATATATAGAA AAAAATATGG GTTATTTACA AGTTTTTATT ACATCATTTT 61 TGTCAATTTC TTGTGTTAGT ATTTTCATGC CAAACTTGGT AGATGCTCAA CTCAAAACCA 121 ATTTTTATGC CCAAACTTGT CCTAATGTTG AATCCATTGT GCGTAATGTT GTTAACCAGA 181 AATTCAAACA AACGTTTGTC ACAATTCCGG CTGTTCTTCG TCTTTTCTTC CATGATTGCT 241 TTGTTGAGGG TTGTGATGCA TCGGTGATAA TAGCATCAAC GGCAGGGAAC ACAGCAGAAA 301 AAGATCACCC AGATAATCTT TCATTGGCTG GAGATGGATT TGACACAGTT ATCAAAGCAA 361 AAGCCGCAGT TGATGCGATC CCAAGTTGTA AAAATAAAGT TTCTTGTGCT GATATTCTTG 421 CCTTAGCCAC TCGAGATGTT ATTCAACTAT CCGGTGGACC GGGGTATGCA GTGGAATTGG 481 GGAGATTAGA TGGTTTGACA TCAAAATCTA CAAATGTAGG GGGAAAGTTG CCTAAACCTA 541 CTTTCAATTT GGATCAACTC AATACAATGT TTGCCTCTCA TGGTTTAAAT CAGGCTGATA 601 TGATTGCCTT ATCTGCGGCC CATACTGTTG GATTTTCTCA CTGCGACCAA TTCTCGAACC 661 GAATTTTCAA CTTTAACCCT AAAAACCCAG TGGATCCAAG TCTCAACAAG ACGTATGCAG 721 CCCAATTAGA ACAAATGTGT CCGAAAAATG TGGACCCAAG AATAGCCATC AACATGGACC 781 CAATAACACC TAGGGCTTTT GACAATGTGT ATTTCCAAAA CTTGCAAAAC GGAATGGGCC 841 TATTCACATC AGATCAAGTT TTGTTCACAG ACCAAAGGTC TAAAGGTACT GTTAATTTGT 901 GGGCCAGTAA TTTTAAAGTT TTTGAAACCG CATTTGTTAA TGCGATGACT AAATTGGGCC 961 GAGTTGGTGT GAAGACGGGT AAGAATGGAA ATATTCGTAT AGACTGTGGA GCATTTAATT 1021 AAGGGCAACT TTCACGTATA GCAAATAAAA AATTCATATT TGTATGTTAT AACAAAGTTT 1081 GCATAATTGC GCTCCATAGC AAACATAAAA CTGTATAATT CGCTATACAT ATACAATTGT 1141 ATAATTCGCT GGCCTAAATT GTATAATTTG ATGGCCTATT TCGCTGCAAT TGTATAATTC 1201 GCTATCTTCA TTCACTGCGA TTGTGTAATG CACAATCGTA TAAATCGCTG CTTATTTCGC 1261 TGCAATATTT TTATAAATTT GCTTTGCATA CCGTTGAATC GAATTAAAAT GTATGTATAT 1321 TGCATAATTA TAAGTGTATG GCAAGAATAT ATATGTTTTT GTCTCGCTTT ATACAAAAAC 1381 AAAAACACAA TATATACACT TCTGTTGTAT AAAGTTAGAG AAAATTGTAT TTCACTGCAA 1441 TTATATAATT CACAATTGTA TAATTCGTTG GCCTTTTTCT CTGCAATATT TGAAGTAAAA 1501 TGTTTGTAAT TTGTATAATT AAGTGTATAA CACGAAGATA TATATTTTTA CATGTGTATA 1561 TACAATTTTC TCTCGCTTTA TACAAAATAG AAACAGAATT TATACACTTC TGTGTATATA 1621 GCGAGATAGG CGAGCGAGAA TGGAGAGTGG CGAGCGAGAT TTTTGGGAGG GAGACGCCTG 1681 ACAAACTTTA GCTAACGTTT GCTATGGAGC ACAATTAAAT CAAACTCTAG CTACTCCATT 1741 TAGTTAGATT ACTAGTTTGC TATTATATAC AATTTTCCCA AGAGCTTGTA TAAAATGGAG 1801 AGAAGGAAAA AGATTTAGAA TTATCGCTTG TGAATGACAA GAAAAGATTG CAAAATAAGA 1861 ATTTAGTTGT TTTGCTTTAA TAAGTTCCTT AATCATTTCA TTAGGGGTGT AATAATAGAA 1921 TAAGAAAAGG GGCTTGAAAT TCAGCTATAA ACAACCAGGG CATAGGTAAC GTGTATACTT 1981 GATGTTATAG GTGAAATTTC AGCTTCTCAA TTTCGATTAA TTAACATTAT ATATATATAT 2041 ATATATTCCC CCAGTATCAC ATTTGATAGG AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 72796 to 87798): Exon 1 73189 73206 ( 18 n); cDNA 1378 1394 ( 17 n); score: 0.833 Intron 1 73207 73629 ( 423 n); Pd: 0.469 (s: 0), Pa: 0.000 (s: 0) Exon 2 73630 73660 ( 31 n); cDNA 1395 1425 ( 31 n); score: 0.677 Intron 2 73661 73891 ( 231 n); Pd: 0.996 (s: 0), Pa: 0.848 (s: 0) Exon 3 73892 73910 ( 19 n); cDNA 1426 1443 ( 18 n); score: 0.579 Intron 3 73911 74234 ( 324 n); Pd: 0.000 (s: 0), Pa: 0.983 (s: 0) Exon 4 74235 74242 ( 8 n); cDNA 1444 1451 ( 8 n); score: 0.750 Intron 4 74243 74604 ( 362 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 5 74605 74618 ( 14 n); cDNA 1452 1464 ( 13 n); score: 0.786 Intron 5 74619 74703 ( 85 n); Pd: 0.000 (s: 0), Pa: 0.837 (s: 0) Exon 6 74704 74718 ( 15 n); cDNA 1465 1479 ( 15 n); score: 0.400 Intron 6 74719 77987 (3269 n); Pd: 0.522 (s: 0), Pa: 0.905 (s: 0) Exon 7 77988 78004 ( 17 n); cDNA 1480 1497 ( 18 n); score: 0.676 Intron 7 78005 82445 (4441 n); Pd: 0.000 (s: 0), Pa: 0.534 (s: 0) Exon 8 82446 82455 ( 10 n); cDNA 1498 1506 ( 9 n); score: 0.700 Intron 8 82456 82705 ( 250 n); Pd: 0.934 (s: 0), Pa: 0.000 (s: 0.82) Exon 9 82706 82882 ( 177 n); cDNA 1507 1678 ( 172 n); score: 0.734 Intron 9 82883 83017 ( 135 n); Pd: 0.988 (s: 0.54), Pa: 0.000 (s: 0.60) Exon 10 83018 83119 ( 102 n); cDNA 1679 1779 ( 101 n); score: 0.672 Intron 10 83120 83706 ( 587 n); Pd: 0.000 (s: 0.76), Pa: 0.885 (s: 0) Exon 11 83707 83735 ( 29 n); cDNA 1780 1806 ( 27 n); score: 0.621 Intron 11 83736 83990 ( 255 n); Pd: 0.000 (s: 0), Pa: 0.645 (s: 0.65) Exon 12 83991 84036 ( 46 n); cDNA 1807 1850 ( 44 n); score: 0.652 Intron 12 84037 84776 ( 740 n); Pd: 0.000 (s: 0.65), Pa: 0.000 (s: 0) Exon 13 84777 84791 ( 15 n); cDNA 1851 1864 ( 14 n); score: 0.800 Intron 13 84792 85413 ( 622 n); Pd: 0.375 (s: 0), Pa: 0.085 (s: 0) Exon 14 85414 85437 ( 24 n); cDNA 1865 1887 ( 23 n); score: 0.625 PPA cDNA 2071 2089 MATCH C08SLm0006K11.1+ SGN-U315404+ 0.711 525 0.251 C PGS_C08SLm0006K11.1+_SGN-U315404+ (73189 73206,73630 73660,73892 73910,74235 74242,74605 74618,74704 74718,77988 78004,82446 82455,82706 82882,83018 83119,83707 83735,83991 84036,84777 84791,85414 85437) Alignment (genomic DNA sequence = upper lines): AACAAATAAT ACAATATGGT ATAATACCTA GCTAACTTTA ACTATACATT TTGGGAATAT 73248 |||||| || ||||||| AACAAA-AAC ACAATATA.. .......... .......... .......... .......... 1394 TTTTTAAAAA ATATCTTTAG ATATTTATTT CATTGTTGAA ATATTTTTAA GGTGTCTAAA 73308 .......... .......... .......... .......... .......... .......... 1394 TCGGGCTTGG AATAGTTTTT GGATTTTTGA TACTTTCCTC TCAAAAAATT ATTTTTTTTC 73368 .......... .......... .......... .......... .......... .......... 1394 AAATGAAAAC TGTCAAAACG TAAGTTAAAA TTGATTGGTG AAATTGGAGC TTAGTTTACT 73428 .......... .......... .......... .......... .......... .......... 1394 GTTTTCCTAT TCCCAGGCAC TGTTTTTTTC CTACTAGAAA ATGACATGAA ACATATATCT 73488 .......... .......... .......... .......... .......... .......... 1394 TGGATCAAAT AAATTATTTA ATTCCTTGAT CCCCTTTTCG ACCTTATTCC CTTTTCTTGT 73548 .......... .......... .......... .......... .......... .......... 1394 CCTTGTTCAT ATGTTAAAGG AAAATATTAT ATTATCTCAA ATTCAAATTG GTTTTGTCCT 73608 .......... .......... .......... .......... .......... .......... 1394 GTTCAATAGA TTTGATGAAA TTACAATTAT TGGTTATAAA TTTACAGGAA AGGCAAGATT 73668 |||| || | |||||| ||| || || | .......... .......... .TACACTTCT GTTGTATAAA GTTAGAGAAA AT........ 1425 TTGTTCCTTG AAGTTCATTT TCATATGTTA TATTGACAAA TAAAAATAAA ACCTTGAAGG 73728 .......... .......... .......... .......... .......... .......... 1425 CAAAAAAAGA GTTTGCTTTG GTCACACAAA TGGTGTATTT TGACATCTTA TGAATATGGT 73788 .......... .......... .......... .......... .......... .......... 1425 TATTACTCTT ACTATTTTCT ATTTGATGTT CTTATAAATA TAGTATAAGA AGAAAAGAAA 73848 .......... .......... .......... .......... .......... .......... 1425 AACTTTTATT TGCAAAAGTT TTAACAAATC TTCTGCATGA CAGATTATTG GCATTGCAAG 73908 |||| || ||||| .......... .......... .......... .......... ...TGTATT- TCACTGCAAT 1441 ATGTATACTA TGAGGAACAA ATGGGATCTG TGATTGATGA GATGCTTCTG CAAGTCCATA 73968 TA........ .......... .......... .......... .......... .......... 1443 TTCTTGGTCG AGGGTATGCT TTAAAATGAA ATCTTTCTTC AGAAAATCCA GTTAATATAT 74028 .......... .......... .......... .......... .......... .......... 1443 AGTACTCCAT TTCAATTTTT TTTGTGTGAT TTTACTTGAG ACGGAGTTTG AGAAAGCAAA 74088 .......... .......... .......... .......... .......... .......... 1443 GATGACTTTT GAATCTTGAA ATTAAAACGT ACTCTTTAGG TAAGTAAGAC AAACAAATTG 74148 .......... .......... .......... .......... .......... .......... 1443 AAGCGGAGGA AGGAGTTCAA TTGTGATATA CTTTAATTTG TAACAAGTTT TCATTATCAT 74208 .......... .......... .......... .......... .......... .......... 1443 AATGTTGATG ATCTGACTTT TTACAGGATA ATTGGCCAAA CAGCATTTAG TAAGAAATAT 74268 ||| ||| .......... .......... ......TATA ATTC...... .......... .......... 1451 AAATGGATGT TTACAGCTGC TAATCATGAA AGGCAGATCT CCATTAGATC ATCTAATAAT 74328 .......... .......... .......... .......... .......... .......... 1451 TCCAACTTAT TCCTGGTAAT AATTTGTTTC CTTGCTTTCC ACAGAAGACT TGTTTGAACT 74388 .......... .......... .......... .......... .......... .......... 1451 TTTTATTTGG GAAAGTTGTG AGTTAATAAG AGGATTTACT AATTTTAAAA CTGGCAAAAT 74448 .......... .......... .......... .......... .......... .......... 1451 TGTAAATTCA TTTGTAGGAT GATAATGAGT TTGAACAACA ATTTTCAGCT GGGATCAAGG 74508 .......... .......... .......... .......... .......... .......... 1451 TACTTCTTTT TTAGTTCTTA TTTTGCATTT TTCAATTCCA CCACCTGCTA ATGTTGGTTT 74568 .......... .......... .......... .......... .......... .......... 1451 CACTCTGTAA CAAATGATTT TGTTGTTATT TTGCAGACAA TTGCTGTATT ATCTGTCGAA 74628 |||| ||| | || | .......... .......... .......... ......ACAA TTG-TATAAT .......... 1464 CCGCTTGGTG TTCTGCAATT TGGTTCTACT AATAAGGTTA GCAATAATGT CTATAATCAC 74688 .......... .......... .......... .......... .......... .......... 1464 AATATGTTGT TGTAGGCATT CACTACTATG GTAGGCTCAC TGATCTATAC TAGTTTAATC 74748 | || | | | .......... .....TCGTT GGCCTTTTTC .......... .......... .......... 1479 AACTTTTGAA ACTTTAACTT GTATTTTCTT AAGTTGATCA TGTTCATGCA CGTACTGCTG 74808 .......... .......... .......... .......... .......... .......... 1479 TATATCTTAA GTAACTGAAT GCTCAAGATG TTGGCATAGC ATCTTGAGTA TTCCTTTACT 74868 .......... .......... .......... .......... .......... .......... 1479 GATCAGACCA TGGGATCGCA TCATCAAACT CTGATTGCTT CAAGTCCTTG CTCAAACAAT 74928 .......... .......... .......... .......... .......... .......... 1479 TTTTAATGTG TACTTATTCG TTTATGTTTT CTGCAGCTTC AAGAGAGCAC ATGTTTTGTG 74988 .......... .......... .......... .......... .......... .......... 1479 GAGCAAGCAA GAACACTTTT CCAGGGGATA GGAGGATCAC CGACTTCATC AAGCTGCGAG 75048 .......... .......... .......... .......... .......... .......... 1479 AATCTGCATT TTGTGAATTC CACTGTTTTT CCAACTGCAA ACAATGAAAG TTTGATGAAG 75108 .......... .......... .......... .......... .......... .......... 1479 GAATCTCATT TTCTAGAAAA TCTCATTCAA TCGGTAACAT GCAATGCGGA AAGTCAGATT 75168 .......... .......... .......... .......... .......... .......... 1479 ATGAATTCTG ATGTAGCTAC AGCATTTTTG AGTGAAAACC AGTTTCAGGA TGTGAATCAG 75228 .......... .......... .......... .......... .......... .......... 1479 TTCAATAATT GCAGCAGCCA ATTTGATACT CAACTACAGC AAGCAATGTT CCCATCTGCT 75288 .......... .......... .......... .......... .......... .......... 1479 GGTTTGTTTA CCAGCTTCCA CGATTCCTGT TTGACGTCAA CCTGGGAAGA TCTCCCATCA 75348 .......... .......... .......... .......... .......... .......... 1479 GATATGAGCA TACAAGATTT CAGTTATGTC CTTCCCACGG GGATAAACCA ATTTGAATAT 75408 .......... .......... .......... .......... .......... .......... 1479 GGCACAGGTG CAACTCAAAG CTTTCATGAC AACACAACAT TTGGTTCCTT AGGTGGATTT 75468 .......... .......... .......... .......... .......... .......... 1479 GGAGTACTTG CAAATGAGGA TACTACTGGC CCTCTAAATG GATACATTGT CCAATGTCCC 75528 .......... .......... .......... .......... .......... .......... 1479 ATCAACCAGA GGAATGATGG AGCAGTTAGT ACTATCAGTG ATAACATATT AGATACGACG 75588 .......... .......... .......... .......... .......... .......... 1479 GGTATCATCT CAGCCTCTGC TGGTATAAAT GAACAGTTTA GGTTCAATTC AGACAGTGAT 75648 .......... .......... .......... .......... .......... .......... 1479 GCTTCTGTTT CGATTCAAAG TTCTATCACC AACGCCTTTG AAACTGTTGA AAAAGCAAAC 75708 .......... .......... .......... .......... .......... .......... 1479 TGTTCAAACA TGTCTGCCAT TGAGAAAATG ACTAATTTGG TTGGAGTTAA ACATGATTCT 75768 .......... .......... .......... .......... .......... .......... 1479 AAAAAACCAT GTAACTGGGG TGATGTTTCG AACCCTGTTG TTAGCACTTC CAACTCTGAA 75828 .......... .......... .......... .......... .......... .......... 1479 TGGACCTATA GTAATGCTAA TGAACTCAGA TCCAGGCCAG CTAACAGGTT ATTCTCCAAA 75888 .......... .......... .......... .......... .......... .......... 1479 CTGGGACTAG ACCAGTTTCT GGATGGTGCC TTGAGCAGCT CTTATTCATT TGCTGGATCT 75948 .......... .......... .......... .......... .......... .......... 1479 TTTTCCGACG GACAGTTGTC AGAAACAAAT AAGAGAAGAA GAGTTGGAAG TTCTTCAGAA 76008 .......... .......... .......... .......... .......... .......... 1479 TGCAATTATC TTCAAAAGCC CCTTGGTTTT TCTAACTTTG ATAAGAATGC AAAGTTGGTG 76068 .......... .......... .......... .......... .......... .......... 1479 CAGCCTGAAT GTGGTCTAGA TAGGACAAGC AACCTTGAAG CCAAAAGTGA GATCATCACA 76128 .......... .......... .......... .......... .......... .......... 1479 AAATTGGATG CAAGTACATT AATTGGAGAC AGATGCAGCA TCAATAATTG CAGAGGCAAT 76188 .......... .......... .......... .......... .......... .......... 1479 GAAAAATCCT CAAAGCCTAC CAAGAAGAAG GCTAAACCAG GAACTCGGCC TATTCCTAAA 76248 .......... .......... .......... .......... .......... .......... 1479 GACCGGCAGC TGATCTATGA ACGTCTATCT GAGTTGCGAG GGCTTATCCC TAATGGGGAG 76308 .......... .......... .......... .......... .......... .......... 1479 AAGGTATTGT CTCCAAACTC ACTATGTTTT TTTCTTAGGT GTAATATATA AACATTCACT 76368 .......... .......... .......... .......... .......... .......... 1479 TGAGCTTGGC TTCAACTGGC AAATAAGCAC TCCAACATTG AGTATGCACA TCTAGACACC 76428 .......... .......... .......... .......... .......... .......... 1479 TCCAAAATTT ATGTGTCATG TCAGCGTTGA GTGTGCACCA GATATAGTGG GGACGAGTTA 76488 .......... .......... .......... .......... .......... .......... 1479 GAGTGTTTAG TTTTAAGTGG AGACCAAGTT TGAGTATATA TTAATGTTCA TGGAAGGTGC 76548 .......... .......... .......... .......... .......... .......... 1479 TTCTGCACTT AGTATTTCTA CGAAGAACTC ATATTTAAGT TGTTTCTATG GCAGATGAGC 76608 .......... .......... .......... .......... .......... .......... 1479 ATTGATCGCT TATTACACAG AACGGTAAAG CACTTGCTTT TCTTGCAAGG TGTCACTAAA 76668 .......... .......... .......... .......... .......... .......... 1479 CATGCTGAAG GACTCAAAAA GGCTGAAAGT TTGAAGGTAA TAATCAAACA CTTTGATTGA 76728 .......... .......... .......... .......... .......... .......... 1479 TTTAACTTGT TTTAGTTGTT AGAAAAATAG ACATGCTTCT CAGTACTAAT TTATAACATG 76788 .......... .......... .......... .......... .......... .......... 1479 TTTATCATTT AGCAGGACTC AGAAACTCGG TTAAACTCCA AGTCTAATGG TAATGGAGTT 76848 .......... .......... .......... .......... .......... .......... 1479 ACATGGGCAT GTGAAATTGG CGATCAAACA ATGGTTTGTC CGCTGATAGT TGAGGACCTT 76908 .......... .......... .......... .......... .......... .......... 1479 AGTACACCTG GTCAAATGCT TATAGAAGTA AGTAATGGTT TTTTGTTGCC GATAAATCTA 76968 .......... .......... .......... .......... .......... .......... 1479 GTCATTTAGT CAAGTCTTGA TAGAAACTTT ATCTAACATA TGATACTATG TGTACTCTTT 77028 .......... .......... .......... .......... .......... .......... 1479 TGCTCAGATA CTCTACAATG AACAAGGCTT CTTTCTGGAG ATGGTAGATA TAATCCGAGG 77088 .......... .......... .......... .......... .......... .......... 1479 CTTTGGCTTG AACATATTGA AGGGAGTGAT GCAGTCACGC GAGACAAAGA TGTGGGCACA 77148 .......... .......... .......... .......... .......... .......... 1479 CTTTGTTGTT GAGGCTGAGG TAAATACTTG ACTGGAAAAC GGCATCAATA AATAAGTCAC 77208 .......... .......... .......... .......... .......... .......... 1479 TTCACTTCTC CTTTGAGCTG TTTTCATCAT TTTAATATTC CAATTCTCCA TGCAGGGTAA 77268 .......... .......... .......... .......... .......... .......... 1479 CCGGCTAGTA ACAAGACACG AGATTTTTTC ATCTCTTGTT CAACTTTTAC ACTTGACAAG 77328 .......... .......... .......... .......... .......... .......... 1479 TGCTAGTAAA GTTGGTCTGA ATAATCAGCT TCAGTATACA TCCGGTGGAA GGAATACTCT 77388 .......... .......... .......... .......... .......... .......... 1479 AATAAATGAT TGTCCAAACT CTGCTGTGCC GATATCTGGC TGCTTACCTG AAACGATCCG 77448 .......... .......... .......... .......... .......... .......... 1479 ATGTGTAAGA TAGCAAAAAT TGCAGTTTCT ATTCTTTTTA GAAGGACAAC TAGCTAGCTG 77508 .......... .......... .......... .......... .......... .......... 1479 ACACTTCCAG ACAAGGAAAT GTGTCATTTT CTGATTTCGC CTTGAATGCC TAGTGAAGTA 77568 .......... .......... .......... .......... .......... .......... 1479 AACTTGTTGG GGTGCATAGG CGTTTTTGCA AACAACTTCC TGGATTTGTT TGTGGTGTCA 77628 .......... .......... .......... .......... .......... .......... 1479 TAGAACACGC GAAGGAGCAT ATTGAGAGGA AGGTGTCTCA AAGAGTTTTT CTCTTTTCAA 77688 .......... .......... .......... .......... .......... .......... 1479 GATTGCTCCT TTTTACCGCC CTTGGAACAC CAAAGAAATA TCTTCTTCTC TCTTGCATAG 77748 .......... .......... .......... .......... .......... .......... 1479 TTTGTTTATA TGTTGAAGCT GACTGACTAG CTAGGTAGTT TAAGGTTACT TTCTGATTTT 77808 .......... .......... .......... .......... .......... .......... 1479 ACTTTTCCAA TTTCTGTTGT TTCTTCTGTA ACTAACTATG AAACATGAAT TACTGAGAAA 77868 .......... .......... .......... .......... .......... .......... 1479 TGTTATTACA TTAGTCTTTG CTTGACATAT AAGGACCATC ATCACCTTGC TGAACCTCCA 77928 .......... .......... .......... .......... .......... .......... 1479 TCAGGATCTT TGTTTATCTT CTTGGTTCTT CAAAAAGTGC TGGTTTCATT TCACTGCAGT 77988 | .......... .......... .......... .......... .......... .........T 1480 CTATAAT-TT TGTAGTAATC GAACCACCTC GTCTAAATGA AGTGCGTGAA AATACTTTTT 78047 || ||| || || |||| CTGCAATATT TGAAGTA... .......... .......... .......... .......... 1497 CTCTTTATAT ATGTGGCTGT GAGACTCAAA ACTCATGTAA AAGCTTTAAC TTGGTACAGA 78107 .......... .......... .......... .......... .......... .......... 1497 GGAGTCAGTT TAGGTCTGCA CATAGTGAAA GTAAACAAAT TTTGAGACTT GATGGTTTAT 78167 .......... .......... .......... .......... .......... .......... 1497 GGTTATGCCT TACCAGAGTT TTGGTCTAAT GATAAGAGCG TAGCTTGTGA TTTGTGGTTA 78227 .......... .......... .......... .......... .......... .......... 1497 GGTGCATTTC ACGAGTACGA ACTATACCAC AAACAAAAAC ATGGTATTGA GAAGCATAAA 78287 .......... .......... .......... .......... .......... .......... 1497 GGAGCGGACT CATTATCTAC ATAGTTTCGA ACTGTGTGCC ACTGGCTATC AAATAGTTCA 78347 .......... .......... .......... .......... .......... .......... 1497 TGGTTATGTT CCACTAATGA AATAATGACA CACGAATCCT CTAACAGCTA TTTTAATACT 78407 .......... .......... .......... .......... .......... .......... 1497 GATGCTGGAA AAGGACAGGT GTAATATTTT TGAAACTTAC TTGAAGAAAG ACAAACTATT 78467 .......... .......... .......... .......... .......... .......... 1497 GATATTTTTT TCAAATAAGT GAAAATAATA AGTGATGTTC CATTTCAAAG TTAAAAGCAG 78527 .......... .......... .......... .......... .......... .......... 1497 AAGAAACCAA TTGAAACCTG AATTATAAAA GCCATATTAT GTTATTTAAC TAACATACAT 78587 .......... .......... .......... .......... .......... .......... 1497 CAAGTCATTT GTGGCCTAAT TTTGGTAGAA CCCCCAATAC CGAAAGGGTT TTTGATTCAT 78647 .......... .......... .......... .......... .......... .......... 1497 CACAGAATAT TCTATTAGAG TAAATATACT TATTATTCCA CTAAGTGCCC ACCACTAATA 78707 .......... .......... .......... .......... .......... .......... 1497 CAAGCATTCG ATAACTCTGT GCCTTGCTTT GGGCTAAGTC AACGCGATTT TCCTTAAAAG 78767 .......... .......... .......... .......... .......... .......... 1497 GCCTTATACA TTTTATACGT AGCTTTTCAA TCTTTTCAGA TATCAATGTG AAACTTTTAT 78827 .......... .......... .......... .......... .......... .......... 1497 TCACACACCC GATATCTCCC CTTGAACTAA GTTCCATGTG TCCAATCACC ACGATCCACA 78887 .......... .......... .......... .......... .......... .......... 1497 GATCAATTTT TGAGATTCAC TGTGTGACAC ACATCATTGG AGTATTTTAT GGCAACTGAA 78947 .......... .......... .......... .......... .......... .......... 1497 GCCTGCAACT AGCTTAGCTT CTTTGTGTGC ATCTCTAAGT TCATAAGGGT TAAGTAAACC 79007 .......... .......... .......... .......... .......... .......... 1497 AAGACCCACA CCATCATTTG CCTTCTCCAT ACTCGTCCCG ACCTCTGATT TCAATTGTCC 79067 .......... .......... .......... .......... .......... .......... 1497 GGGGGCTAGA TCAGTCCAAA GATACTGTTG ACATGGTGTG ATATTGTCCG CTTTGTGTCA 79127 .......... .......... .......... .......... .......... .......... 1497 AGTCAGCACC GTTTTTCCCA TAAGGCCTCA CACCCTTATA TATAGTTTCT CAACCTTTTC 79187 .......... .......... .......... .......... .......... .......... 1497 GGCTATCAAT ATGGAACTTC TGTTCGCACA TACAACAAGA ATTAACTAAA AATTACTAAC 79247 .......... .......... .......... .......... .......... .......... 1497 ATAGATCAGA CTACAACAAT AGGACACTAA AACTAAGATA TCAGAAAAAG ACTATAAACT 79307 .......... .......... .......... .......... .......... .......... 1497 GTATAAGCAT AAACAAAATG ACCTTGCTAC ATAAGCTAAA TGTAAAAAAC TGATATTAGA 79367 .......... .......... .......... .......... .......... .......... 1497 GGATTCTGAT GGGAGAAGCA CTAATCATAA AGGATTACTA TAATTAGACA GTGAGATGAC 79427 .......... .......... .......... .......... .......... .......... 1497 CTAAACCATA CTTTAAAGTA AGTATTAGTT AGTGACCACC AGCTGTTTTA ATAAAACCCA 79487 .......... .......... .......... .......... .......... .......... 1497 AACTGATGAC ATTTAGTTTT TATGAAATTA ATTGTTTATT TTTACCACTT ATCAGCCAAA 79547 .......... .......... .......... .......... .......... .......... 1497 CTGTAATGGT ACTTGTGGTT TTTCTTAAAC CTGATATTTT GGAACAAACT TTTTCTTATA 79607 .......... .......... .......... .......... .......... .......... 1497 AAACTTACTG CTTTATATAA ACTGCAACTG AGTCATGACC TACTCCAATA GTATTTGAAT 79667 .......... .......... .......... .......... .......... .......... 1497 ATCTTTAAAT TAATTATGTG GCCAAAGTTT TACATCTTTA TATAAAGAAG TAACATTCAC 79727 .......... .......... .......... .......... .......... .......... 1497 AATATATTGT ACAAGTACTC TTGTTTATTT TTCTATATAT ATTGCATTAA CATGAATGCA 79787 .......... .......... .......... .......... .......... .......... 1497 ATCAACAATG CAGAATGGAG GATCAGGATG GCTGATGGCT CGTCCGAAAA TTTGGCACCA 79847 .......... .......... .......... .......... .......... .......... 1497 GAATCGAGCC TAGTTACAAG AATGTACCTT TCATTTGAAC GATTCTTGAA AAATTTGATC 79907 .......... .......... .......... .......... .......... .......... 1497 TTGATAGTCA TGAGATTTTT GGAGAAATCA TGGAACATAG GAAAGAATGA ACCAAGAAAG 79967 .......... .......... .......... .......... .......... .......... 1497 GTGATCCATT GTCTTAAAGT TGGAATAGCT CTATGCGTTG TATCGTTGTT CTATTATATG 80027 .......... .......... .......... .......... .......... .......... 1497 AGACCTTTGT ATAATGGTGT TGGAGGAACT GCAATGTGGG CTGTTATGAC TGTTGTTGTG 80087 .......... .......... .......... .......... .......... .......... 1497 GTTTTTGAGT ACACTGTGGG TAAGTAGCAA GTAGTTTGAA TTTTTTACAC TTTTTTGTAG 80147 .......... .......... .......... .......... .......... .......... 1497 GCTAAGAGTT ATAAGAAAAT TGCAGGAGCA ACACTATACA AATGCTTAAA CAGAGCTACT 80207 .......... .......... .......... .......... .......... .......... 1497 GGTACTTTTT GTGCTGGATT TCTTGCAATA GGGATCCATT GGATTGCTAA TCAATCAGGC 80267 .......... .......... .......... .......... .......... .......... 1497 AAAAGATTTG AGCCTATAAT TATGGGAGTT TCTATTTTCA TATTAGGTGA GTGATGTTTG 80327 .......... .......... .......... .......... .......... .......... 1497 TAAATAAAAA TTACTTTTTG CATATAGGAT ATGACTATGT TGTTTGGACT CTCCAAAAAT 80387 .......... .......... .......... .......... .......... .......... 1497 ACTACCGCTC TACTTTGTGA GGATCTGACA TGCACACATC CACATTTTTT AAGAGTCGGA 80447 .......... .......... .......... .......... .......... .......... 1497 GCTACCTAGG GATAATTTTC ATATTAGGTG AGTGATCTTT GTACATATAG GACCTGGATT 80507 .......... .......... .......... .......... .......... .......... 1497 ATCTGTTACT AATTTTTTTC TTTCTTCACT CGATTTAGCC TCAGCAGCAA CTTTCACAAG 80567 .......... .......... .......... .......... .......... .......... 1497 GTTCATTCCT GCAGTGAAAG CACGGTATGA TTATGGCACT ATGATCTTCA TTCTGACTTT 80627 .......... .......... .......... .......... .......... .......... 1497 CACATTGGTT TCAATATCTG GATATCGTGT TGCAAATTTG TTGAACATGG CTCACGAGAG 80687 .......... .......... .......... .......... .......... .......... 1497 AGTATCAACG ATCATCATCG GTGCTTCCTT GTGTGTTATT ACAAGCATTC TCATATTTCC 80747 .......... .......... .......... .......... .......... .......... 1497 CATATGGGCT GGTGAAGAGC TCCATAAACT TGTCATTAGT AACTTGGAAA AGCTAGCAGA 80807 .......... .......... .......... .......... .......... .......... 1497 GTCCTTAGAT TGTAAGTATT TCTTGCCTAA AATTTGGATA TCAGTAACAA AATTTCATCA 80867 .......... .......... .......... .......... .......... .......... 1497 TATATTGTTT TTAAAGTTGA TCCTCAATTG TCCTTTTAGG TTGTGTAGCT GAATTTTTTA 80927 .......... .......... .......... .......... .......... .......... 1497 GCGACAGTGA AGACACAACA ACAAATACTA AAAAAATGCT AGCTTTCAAG TGTGTGTTGA 80987 .......... .......... .......... .......... .......... .......... 1497 ATTCAAAGGC CTCTGAAGAG ACAATGGTAA GTTTTTGCCA ATATCAATAT AAGCTATGTT 81047 .......... .......... .......... .......... .......... .......... 1497 ACTCGGACTC TTTAAAATAC CGTTGGGTGA GTGTCAGATC TTCCAAAGGT AGTGCGTGGA 81107 .......... .......... .......... .......... .......... .......... 1497 TTTGTGGCAC CGACTCATTT TTTGCTTCAA AATTGATCCA AATAACCCCA AAACAACTTC 81167 .......... .......... .......... .......... .......... .......... 1497 AAATTTTACT GATATAACAT GGAATTATCT GCTAGGCCAA CTTTGCTAGA TGGGAGCCTG 81227 .......... .......... .......... .......... .......... .......... 1497 CTCATGGACT TTTCAACTTT CAACATCCAT GGGGAAAGTA CCTTAAGATC AGCGCGTCAA 81287 .......... .......... .......... .......... .......... .......... 1497 TGCGTAGTTG TGCCTGTTGC ATTGAGGCAC TTACAAGCTG CATCAATCAA AAAGATCAGG 81347 .......... .......... .......... .......... .......... .......... 1497 TCGGCTAAAT TCTTAATTCT ACTAAAAAAT TATACAAACT CTTTAACTAA CTAAAAGGCA 81407 .......... .......... .......... .......... .......... .......... 1497 AAAAATTTCA TTGTGTTATA GGCTTCTGAG TTGTTAAAGA ATGAGCTTAC TAACACTTGC 81467 .......... .......... .......... .......... .......... .......... 1497 CAACAAGTAA GTTCAAGTAC AAGTGAGATA CTGAAAGAGT TAGCTTTAAA CATGAAAACA 81527 .......... .......... .......... .......... .......... .......... 1497 ATGAGAAAAT CCTCCAGGAT GGATATCTTA CTACAAGAAA AGAGTAACGC GATTCAAGAA 81587 .......... .......... .......... .......... .......... .......... 1497 CTAGAAACTC TGATGGAACA ACTTTCAGGA TTGCTTTTTA TACAGCCAAA GAATGATCAA 81647 .......... .......... .......... .......... .......... .......... 1497 GAAAAGCCAG TTATAAGAAC CAGTAGTACT AATGTTATCC CTCTTGTTGA AATCATACCA 81707 .......... .......... .......... .......... .......... .......... 1497 ACTGCAACAT TTGCTTCTTT AGTGATCGAA ATTGCCACGA GGATCGAAGG GGTTGTTGAT 81767 .......... .......... .......... .......... .......... .......... 1497 GGTGTTGAAG AATTATCAAA ATTGGCAAAA TTCAAACTTG AGGATGCTGA TATGATAATC 81827 .......... .......... .......... .......... .......... .......... 1497 AAACAGAACA AACCAGTCAT CAAGAATATC ATAAACTAGC GGAACCTTAC TGTTGATTTC 81887 .......... .......... .......... .......... .......... .......... 1497 ATATGTCTAG CTATGTTCAG GTTACCAATT GCTAGCTCTT GTTGTACTAA TATATCAAAT 81947 .......... .......... .......... .......... .......... .......... 1497 TTCCTAATTG TCCATTTGAT ATAGTTTCTA CTTTATTTCA ATGTCTAATT CTTGTAGCAC 82007 .......... .......... .......... .......... .......... .......... 1497 TTACCAATGA GGTCCTATTG ATGTATGGAC CTTTTAGAAA AGGTTTGAAT GTCTCTTCTG 82067 .......... .......... .......... .......... .......... .......... 1497 CCTAGCGTTT GACCATAAAT TTTTAAATAT TATTTGGGTG GAATTTTACC ATTTCATACA 82127 .......... .......... .......... .......... .......... .......... 1497 TCGTGAAGTA AACAAACACA TGACTTTGTT ATTCTGAGCT AAATTTTCAT CATTTTCTTC 82187 .......... .......... .......... .......... .......... .......... 1497 AATAACCATA TCATTACTAC TTTGGTGTTC ACCTAATAAA TTATGTAATA CAACACAAAC 82247 .......... .......... .......... .......... .......... .......... 1497 ACTACTATAT AGGGTGTTTT TAGTAATAGA TAAAAGGTTA GGGTAAAATT TCAATTTTCA 82307 .......... .......... .......... .......... .......... .......... 1497 AAATATCCCA AGTAATGAGA TTTGACCCAA ATACTAGAAA AAACTAGTAT TTGGGAATTT 82367 .......... .......... .......... .......... .......... .......... 1497 GGATATTTGC CAAAAATATT TACCAAATAA TGACAAATTG TACGGAGAAA CACTATTTGC 82427 .......... .......... .......... .......... .......... .......... 1497 CAAATTTTTC CTCATTAGGA AATCTATGGC AAAACGGCCA ACTTTCACAT ATAGCAAACA 82487 | ||| | || .......... ........-A AATGTTTG.. .......... .......... .......... 1506 CAAAATTCAT ATTTGTATGC TATATCAAAG TTTGCATAAT TGCGCTCAAT AGCAAACATT 82547 .......... .......... .......... .......... .......... .......... 1506 AATATATATA ATTCGCTATA CATATAGAAT GAAACTAATT GTATAATTCG CTATACATAT 82607 .......... .......... .......... .......... .......... .......... 1506 ACAAAAGAAA GCAGTTGTAT ACAAATCAAT TGTATAATTT GTGTATGTAT AAAACGAGAA 82667 .......... .......... .......... .......... .......... .......... 1506 AGAGAGAAAG ATAAAAGAAA ATTGGGCAGG GGAATATTTA TATTGTATAA TTATAAGTGT 82727 || |||||||| | ||||||| .......... .......... .......... ........TA ATTTGTATAA -T-TAAGTGT 1526 ATAGGACGAA GATATATGTA TTTGCATGTG TATATACAAT TTTCTCTCGC TTTATGC-AA 82786 ||| ||||| ||||||| | ||| |||||| |||||||||| |||||||||| ||||| | || ATAACACGAA GATATATATT TTTACATGTG TATATACAAT TTTCTCTCGC TTTATACAAA 1586 ACGGAAACGC AATTTATACA TTTCGTTTGT ATA-AGCGAT AGAGGCGAGA GTGTTGAGAG 82845 | ||||| |||||||||| ||| | ||| ||| ||||| | ||||||| | | ||| ATAGAAACAG AATTTATACA CTTC-TGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG 1645 AGATCTGGGA GAGAGGAGAG AGGGGAGAGG GGAACAAGTA TATATATATA TAAATTTTCT 82905 || | | || | || || ||||| || || AG-T-GGCGA GCGA-GATTT TTGGGAG-GG AGACGCC... .......... .......... 1678 CGGTTTATAC AAACACAAAT ACATTTTATA CACTTGTGTC TGTATAAAAG TGAGAGGGAG 82965 .......... .......... .......... .......... .......... .......... 1678 CGAGCGAGAG ATGGAACGAG AGAGGGAAGT GGTGAGCGAG AGCTTAAGGG AGAGACGTGC 83025 ||| | .......... .......... .......... .......... .......... ..TGACAAAC 1686 ATGA-CAAAC AGTTTTCTAC ACGATACAAT TAAATCAAAG TATGATTATA ACATTTAATT 83084 | | | ||| |||| ||| ||||| ||||||||| | | || |||||| || TTTAGCTAAC -GTTTGCTAT GGAGCACAAT TAAATCAAAC TCTAGCTACT CCATTTAGTT 1745 TGATTTATCA ATTTGTCATT ATATACAATT TTCCCTAAAT TGAGCCTCTT AAAATTGTGA 83144 |||| | | |||| ||| |||||||||| ||||| AGATT-ACTA GTTTGCTATT ATATACAATT TTCCC..... .......... .......... 1779 ACTTTGGCCC AATACCTTTG AGCCCATTCA GGTACCCACT GGAGCTCCGA GAAAGAAAAA 83204 .......... .......... .......... .......... .......... .......... 1779 GGAAGTTCGT CGTCTTCTTC TTTATATGAA AAACAAAAAA AAACCTTCGC GGGTTTTCTA 83264 .......... .......... .......... .......... .......... .......... 1779 GAGAGATTGT TGGATTTTTT TTTCTCAAGT AAAAAAGCTA CAGCTTTCAA GGTTTTGATC 83324 .......... .......... .......... .......... .......... .......... 1779 TTTTTCTCTT AATTAATTGC TTTACTTTTT GCCATGGCCG ACGAAATTAT AACATCGGAG 83384 .......... .......... .......... .......... .......... .......... 1779 GGAGTTTCAA GTTCGTCTGA GCTGAACTCG TCGTCTCGTA TAATATGTCG GGTGTAAGTA 83444 .......... .......... .......... .......... .......... .......... 1779 TTGTTAATTT TTTAGCTTTG ATTTCAATAT ATTAGTTCTT TTATGCTTTA TTGTTTTCTT 83504 .......... .......... .......... .......... .......... .......... 1779 TAATTGATTC AATTTTTCAG TTTTCAGCAA GTTTTTGAGT TTTCTGCTTA AACACTCAAT 83564 .......... .......... .......... .......... .......... .......... 1779 TGGGATGTTA TCAATATTGG TTTTTTTGGC TTGTCATGCT CAAATTAGAA ACTAGAAGTA 83624 .......... .......... .......... .......... .......... .......... 1779 ACTTACAGCT AAATGGACTT AGCAACGCAT GCTTGAGTAA TTGTAGTTTG CTTTCATTAC 83684 .......... .......... .......... .......... .......... .......... 1779 ACATTTACAC TCCACTCTTT AGGAGTGGCT AATGTGAAAT GGACGAATAG AGCGGAATAT 83744 || ||| | | |||| ||| || || .......... .......... ..AAG-AGCT TGTATAAAAT GGA-GAGAAG G......... 1806 TAATCGTGAA ATAGCATGGC AATAGGATGT CGAGGTCTGA ATTTTGAAGT GAATTCTTTT 83804 .......... .......... .......... .......... .......... .......... 1806 TTAGAAAGAG AATTCATATT GATGACCCCA ACTTATTTGG GGTTGAGGGG TAGTTGATTG 83864 .......... .......... .......... .......... .......... .......... 1806 ATTGATTTGT TGAGGCCTTC TTTGCATCTT CCTGACATTT AGCTTGTGTT GAGAGTTGCG 83924 .......... .......... .......... .......... .......... .......... 1806 ATTTGTGGGT TATGCCATTT GTGATTTGTC ACAGTTTCTT TTTTCTCTAT TTGCATGTTG 83984 .......... .......... .......... .......... .......... .......... 1806 ATATAGAGAA ATGATTGTAG TTCTTTCAGA TGACAATGAA ATTAAAAGAT GGATTGTTAT 84044 | || | |||| ||| | || || ||||| | ||||||| | ......A-AA AAGATT-TAG AATTATCGCT TGTGAATGAC AAGAAAAGAT TG........ 1850 ACATGAACTT TAGACAAAGT TGAACAGAAT TTGGTGTACT TTGGTCACTT TGTTTGCGTT 84104 .......... .......... .......... .......... .......... .......... 1850 ACCACCATTT TTGGGATTTA GGAGCGGCTA TATGATGCCT ATCTTATAAA TGTACAATGC 84164 .......... .......... .......... .......... .......... .......... 1850 TTGCACAATT ATGGACGCAG GTAGGCTTAG AGGGATCGAA GTGATTATCA GACACGTTAG 84224 .......... .......... .......... .......... .......... .......... 1850 TGAATAGTCC ATCTGATTTT TTTATTGATG AAGAGTCCAT CTGAAAATTG AACACGATAC 84284 .......... .......... .......... .......... .......... .......... 1850 TGTACAATTT CAAGTTAAAT CCTCATTGTT TGGGGTATTC CATTGTCTCC CTTAAAGATC 84344 .......... .......... .......... .......... .......... .......... 1850 CAAATTAGAA ACCTAATACT TTCCTCCTAT GATATTGAGG CAAATATTTT TTCCTTCACT 84404 .......... .......... .......... .......... .......... .......... 1850 GTTGGATATG TGAAGGTTGA AACATTTTTC AGGTGAAAGG GGATCAATTC CTGGAATTGA 84464 .......... .......... .......... .......... .......... .......... 1850 ACTCATGAAC ATGGAAGTTT CACCCACATA GTTCATCTAT TCTTTAGTTT CTTCCTATTC 84524 .......... .......... .......... .......... .......... .......... 1850 TACATTCTGA GCGTATGAGA AGTTTTCACT AAGACGAATA TGTTGACTTC ATTATCATTT 84584 .......... .......... .......... .......... .......... .......... 1850 ACTATTGTGA CCTGCCTATT TTACATTCTA CCAATGCTGC ACATGAGAAG TCTCATCAAA 84644 .......... .......... .......... .......... .......... .......... 1850 AGTTTCAGAT TGTGCAAATC TCCCATCATT TCTCTAATGG AATCTACATC ATTTATGATA 84704 .......... .......... .......... .......... .......... .......... 1850 ACCAGTTTGC GCCAAAAAGC TAGCAAAAAA TTCGCATGAG CTTAAGGTTT TCTGAGGTAA 84764 .......... .......... .......... .......... .......... .......... 1850 TCTTGGAAAG ACCAAAAGAA AAATTGTGTA TCCACTGATT CCTATCGTAT TTTTTTCCCT 84824 ||||| || |||| | .......... ..CAAAATAA GAATT-T... .......... .......... .......... 1864 TGCTTATTCA ATATAATGGG GAAATTGAAA ATCTGATAAT TTCTTCTTAG CAAGTTGTTT 84884 .......... .......... .......... .......... .......... .......... 1864 GTCTATCAAA ATTGTGAGTG GCTATAATAA CAGCAATGCT TACTTTTTGT GCAGTTGTCA 84944 .......... .......... .......... .......... .......... .......... 1864 AAAGCAATTT TCGCAGTATA CCTGCCCTCG ATGTAATACC CGTTATTGCT CTCTGCCTTG 85004 .......... .......... .......... .......... .......... .......... 1864 TTACAAGGTA AGCGAAAAAT GGCTTCTTCT AAGTGAAGCT GGAAACTATG ATCTTTTGCA 85064 .......... .......... .......... .......... .......... .......... 1864 CTTCCTTTTT TTTCTTCTGA AATCTACCTA TGCCGAAAGT TGTTATTGTT AGCATGTGAT 85124 .......... .......... .......... .......... .......... .......... 1864 GGCTATAAGT CCCATATATT GTGGAGAATC TATTGAACCA TCGTCCCTGA TTTTTCTTAA 85184 .......... .......... .......... .......... .......... .......... 1864 TGATATTGGT GGCAGTCTCA TAGTCTTCGT TGCACCGAAT CCTTTATGAG AGAGAATGTC 85244 .......... .......... .......... .......... .......... .......... 1864 ATGGAGGAAC TACAGCATTT GCAACCAAAT GATGGAAGTA AGCAGAAAAT GCTAGACATA 85304 .......... .......... .......... .......... .......... .......... 1864 CTTAAACGAT TCCACTCAGA AGATGAAGCA GACATCATGG ATGAAGATGG TAAGCATTGT 85364 .......... .......... .......... .......... .......... .......... 1864 TTTGTTGTCT GCAATAATGA ATCCATTCCT GCTTGATGCG TTTCCACAGA ATCGCATTTC 85424 | | | || | .......... .......... .......... .......... .........A GTTGTTTTGC 1875 ATTAATTAAT ATC 85437 |||| ||| || TTTAA-TAAG TTC 1887 hqPGS_C08SLm0006K11.1+_SGN-U315404+ (82706 82882) ******************************************************************************** EST sequence 2 +strand 375 n (File: SGN-U332665+) 1 AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTCTCTTA ATTAATTGCT TTACTTTTTG 61 CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 121 CGTCTCGTAT AATATGTCGG GTTTGTCAAA AGCAATTTTC GCAGTATACC TGCCCTCGAT 181 GTAATACCCG TTATTGCTCT CTGCCTTGTT ACAAGTCTCA TAGTCTTCGT TGCACCGAAT 241 CCTTTATGAG AGAGAATGTC ATGGAGGAAC TACAGCATTT GCAACCAAAT GATGGAAGTA 301 AGCAGAAAAT GCTAGACATA CTTAAACGAT TCCACTCAGA AGATGAAGCA GACATCATGG 361 ATGAAGATGA TTCCC Predicted gene structure (within gDNA segment 82696 to 86023): Exon 1 83296 83437 ( 142 n); cDNA 1 142 ( 142 n); score: 1.000 Intron 1 83438 84938 (1501 n); Pd: 0.902 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 84939 85011 ( 73 n); cDNA 143 215 ( 73 n); score: 1.000 Intron 2 85012 85199 ( 188 n); Pd: 0.999 (s: 1.00), Pa: 0.188 (s: 1.00) Exon 3 85200 85353 ( 154 n); cDNA 216 369 ( 154 n); score: 1.000 Intron 3 85354 85770 ( 417 n); Pd: 0.953 (s: 1.00), Pa: 0.882 (s: 0) Exon 4 85771 85776 ( 6 n); cDNA 370 375 ( 6 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-U332665+ 1.000 375 1.000 C PGS_C08SLm0006K11.1+_SGN-U332665+ (83296 83437,84939 85011,85200 85353,85771 85776) Alignment (genomic DNA sequence = upper lines): AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTCTCTTA ATTAATTGCT TTACTTTTTG 83355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTAC AGCTTTCAAG GTTTTGATCT TTTTCTCTTA ATTAATTGCT TTACTTTTTG 60 CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 83415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGGCCGA CGAAATTATA ACATCGGAGG GAGTTTCAAG TTCGTCTGAG CTGAACTCGT 120 CGTCTCGTAT AATATGTCGG GTGTAAGTAT TGTTAATTTT TTAGCTTTGA TTTCAATATA 83475 |||||||||| |||||||||| || CGTCTCGTAT AATATGTCGG GT........ .......... .......... .......... 142 TTAGTTCTTT TATGCTTTAT TGTTTTCTTT AATTGATTCA ATTTTTCAGT TTTCAGCAAG 83535 .......... .......... .......... .......... .......... .......... 142 TTTTTGAGTT TTCTGCTTAA ACACTCAATT GGGATGTTAT CAATATTGGT TTTTTTGGCT 83595 .......... .......... .......... .......... .......... .......... 142 TGTCATGCTC AAATTAGAAA CTAGAAGTAA CTTACAGCTA AATGGACTTA GCAACGCATG 83655 .......... .......... .......... .......... .......... .......... 142 CTTGAGTAAT TGTAGTTTGC TTTCATTACA CATTTACACT CCACTCTTTA GGAGTGGCTA 83715 .......... .......... .......... .......... .......... .......... 142 ATGTGAAATG GACGAATAGA GCGGAATATT AATCGTGAAA TAGCATGGCA ATAGGATGTC 83775 .......... .......... .......... .......... .......... .......... 142 GAGGTCTGAA TTTTGAAGTG AATTCTTTTT TAGAAAGAGA ATTCATATTG ATGACCCCAA 83835 .......... .......... .......... .......... .......... .......... 142 CTTATTTGGG GTTGAGGGGT AGTTGATTGA TTGATTTGTT GAGGCCTTCT TTGCATCTTC 83895 .......... .......... .......... .......... .......... .......... 142 CTGACATTTA GCTTGTGTTG AGAGTTGCGA TTTGTGGGTT ATGCCATTTG TGATTTGTCA 83955 .......... .......... .......... .......... .......... .......... 142 CAGTTTCTTT TTTCTCTATT TGCATGTTGA TATAGAGAAA TGATTGTAGT TCTTTCAGAT 84015 .......... .......... .......... .......... .......... .......... 142 GACAATGAAA TTAAAAGATG GATTGTTATA CATGAACTTT AGACAAAGTT GAACAGAATT 84075 .......... .......... .......... .......... .......... .......... 142 TGGTGTACTT TGGTCACTTT GTTTGCGTTA CCACCATTTT TGGGATTTAG GAGCGGCTAT 84135 .......... .......... .......... .......... .......... .......... 142 ATGATGCCTA TCTTATAAAT GTACAATGCT TGCACAATTA TGGACGCAGG TAGGCTTAGA 84195 .......... .......... .......... .......... .......... .......... 142 GGGATCGAAG TGATTATCAG ACACGTTAGT GAATAGTCCA TCTGATTTTT TTATTGATGA 84255 .......... .......... .......... .......... .......... .......... 142 AGAGTCCATC TGAAAATTGA ACACGATACT GTACAATTTC AAGTTAAATC CTCATTGTTT 84315 .......... .......... .......... .......... .......... .......... 142 GGGGTATTCC ATTGTCTCCC TTAAAGATCC AAATTAGAAA CCTAATACTT TCCTCCTATG 84375 .......... .......... .......... .......... .......... .......... 142 ATATTGAGGC AAATATTTTT TCCTTCACTG TTGGATATGT GAAGGTTGAA ACATTTTTCA 84435 .......... .......... .......... .......... .......... .......... 142 GGTGAAAGGG GATCAATTCC TGGAATTGAA CTCATGAACA TGGAAGTTTC ACCCACATAG 84495 .......... .......... .......... .......... .......... .......... 142 TTCATCTATT CTTTAGTTTC TTCCTATTCT ACATTCTGAG CGTATGAGAA GTTTTCACTA 84555 .......... .......... .......... .......... .......... .......... 142 AGACGAATAT GTTGACTTCA TTATCATTTA CTATTGTGAC CTGCCTATTT TACATTCTAC 84615 .......... .......... .......... .......... .......... .......... 142 CAATGCTGCA CATGAGAAGT CTCATCAAAA GTTTCAGATT GTGCAAATCT CCCATCATTT 84675 .......... .......... .......... .......... .......... .......... 142 CTCTAATGGA ATCTACATCA TTTATGATAA CCAGTTTGCG CCAAAAAGCT AGCAAAAAAT 84735 .......... .......... .......... .......... .......... .......... 142 TCGCATGAGC TTAAGGTTTT CTGAGGTAAT CTTGGAAAGA CCAAAAGAAA AATTGTGTAT 84795 .......... .......... .......... .......... .......... .......... 142 CCACTGATTC CTATCGTATT TTTTTCCCTT GCTTATTCAA TATAATGGGG AAATTGAAAA 84855 .......... .......... .......... .......... .......... .......... 142 TCTGATAATT TCTTCTTAGC AAGTTGTTTG TCTATCAAAA TTGTGAGTGG CTATAATAAC 84915 .......... .......... .......... .......... .......... .......... 142 AGCAATGCTT ACTTTTTGTG CAGTTGTCAA AAGCAATTTT CGCAGTATAC CTGCCCTCGA 84975 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...TTGTCAA AAGCAATTTT CGCAGTATAC CTGCCCTCGA 179 TGTAATACCC GTTATTGCTC TCTGCCTTGT TACAAGGTAA GCGAAAAATG GCTTCTTCTA 85035 |||||||||| |||||||||| |||||||||| |||||| TGTAATACCC GTTATTGCTC TCTGCCTTGT TACAAG.... .......... .......... 215 AGTGAAGCTG GAAACTATGA TCTTTTGCAC TTCCTTTTTT TTCTTCTGAA ATCTACCTAT 85095 .......... .......... .......... .......... .......... .......... 215 GCCGAAAGTT GTTATTGTTA GCATGTGATG GCTATAAGTC CCATATATTG TGGAGAATCT 85155 .......... .......... .......... .......... .......... .......... 215 ATTGAACCAT CGTCCCTGAT TTTTCTTAAT GATATTGGTG GCAGTCTCAT AGTCTTCGTT 85215 |||||| |||||||||| .......... .......... .......... .......... ....TCTCAT AGTCTTCGTT 231 GCACCGAATC CTTTATGAGA GAGAATGTCA TGGAGGAACT ACAGCATTTG CAACCAAATG 85275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCGAATC CTTTATGAGA GAGAATGTCA TGGAGGAACT ACAGCATTTG CAACCAAATG 291 ATGGAAGTAA GCAGAAAATG CTAGACATAC TTAAACGATT CCACTCAGAA GATGAAGCAG 85335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAAGTAA GCAGAAAATG CTAGACATAC TTAAACGATT CCACTCAGAA GATGAAGCAG 351 ACATCATGGA TGAAGATGGT AAGCATTGTT TTGTTGTCTG CAATAATGAA TCCATTCCTG 85395 |||||||||| |||||||| ACATCATGGA TGAAGATG.. .......... .......... .......... .......... 369 CTTGATGCGT TTCCACAGAA TCGCATTTCA TTAATTAATA TCGTGTAAAG AGGAGTAATA 85455 .......... .......... .......... .......... .......... .......... 369 TGAATCTTGT TTTTGTTTTC TACAATTTTT TTAAAAAATA ATTCATTGAT ACAACTTTTC 85515 .......... .......... .......... .......... .......... .......... 369 TTGTACTTCA CAATAAGGAT GTTTGATTTG CTCAACAAAT TTTGTTTCAG TGGATTCTTG 85575 .......... .......... .......... .......... .......... .......... 369 CTGTATCCAT GTATCATCAA TCCTGTTGCT TTGCAATGTG GTTGTATGAA TGAATCTTAT 85635 .......... .......... .......... .......... .......... .......... 369 ACTCACATTA CCTTTCACGA AACTAATGAA ATTATTGAAC TGACGTTACA TGCATTATAG 85695 .......... .......... .......... .......... .......... .......... 369 AGGACAACAT GACTTGCGTT TTTTATCTCT GCAATTCTTA ACCATAACTT TCCCTTATTG 85755 .......... .......... .......... .......... .......... .......... 369 ATCTTGTTAC ATCAGATTCC C 85776 ||||| | .......... .....ATTCC C 375 hqPGS_C08SLm0006K11.1+_SGN-U332665+ (83296 83437,84939 85011,85200 85353) ******************************************************************************** EST sequence 28 -strand 901 n (File: SGN-U340134-) 1 AGAAAGTCAA GTGAAAGTGG GCCATCCCCT TTACTGCTTG GTTCACTTGG TTGACATCAA 61 GTACAGTTAT TGCTTTATTC TTCGCCTTCT ACAATGGTGA CTGGCAATCA GATCCCGTAG 121 GATCAGCCAC AGTTTTGTTA AGCGTCTTTT CTGTTCTTGG TCAAGGGGGG CAGCCAGAGA 181 CAGTCCTGAA AGCTCTATCC CACTGCATGG AGCAAACATG CTCATCAGCC TTCAGACACA 241 CGGGGGGCCT GCAATTCGCA TTGGGGCTAA TCAACGACAC AATAACCCTT CTTCATCTTG 301 ATACTCCAGC CGTAGTTTGC CTGCTTTGTG ACCTAAGGAG ACTAATCCAA CACGCAGAGA 361 AGGATTTGAA GTCGGAGAAG TACTGCAAGT CCAAAAGTTC TGAAATGAAA ACGAAGCTCA 421 AGTCTGCAGA AAGGAAGGTT TATTTTATCA TGTGTTGGGC TCACGAGCAG CCAAAAGAAG 481 CATGGTCTTC CATAGCAGCC ATTGTCGAGG CAGAGAAGAG CCGACTAGTT GAATTCGTAG 541 GGAGTAAAAC AAGTGTTCCA AAAATGACGA AAGTACAGAG TGAGGGCAGG CCTCTGATTA 601 AGGAGGTTGA ATAACTGTCT GTTCCTTCTG CATGACAAGC TGCAGCAGAT AACACAAGAT 661 CAGTGATGCT TGCAAAAATG TTAAGTTCAG ATCACTGAGT TTTGACTTTG TATAATTGCC 721 TGAATTATTT TATTCACTTT CTCTTTGGAA CTTTTTCATG GGCCACTGAA ACAATTTAAG 781 AGAAGAAAAG CAAAAGCTTA TATGGAAAAG AGATAATTTA CTTATCTAAA AAAAAAAAAA 841 AAAAAAACTC GAGGGGGGGC CCGGTACCCA ATTCGCCCAT AAGTAAGTCG AATCCGACCT 901 T Predicted gene structure (within gDNA segment 85059 to 88365): Exon 1 86210 87035 ( 826 n); cDNA 1 828 ( 828 n); score: 0.976 MATCH C08SLm0006K11.1+ SGN-U340134- 0.976 826 0.917 C PGS_C08SLm0006K11.1+_SGN-U340134- (86210 87035) Alignment (genomic DNA sequence = upper lines): AGAAAGCTCA GTGCAGCTGG GCCATCCCCT TTACTGGCT- GTTCACCTTG TTGACATCAT 86268 |||||| | ||| | ||| |||||||||| |||||| | |||||| | | ||||||||| AGAAAGTCAA GTGAAAGTGG GCCATCCCCT TTACTGCTTG GTTCACTTGG TTGACATCAA 60 GTACAGTTAT TGCTTTACTC TTCGCC-TCT ACAATGGTGA CTGGCAATCA GATCCCGTAG 86327 |||||||||| ||||||| || |||||| ||| |||||||||| |||||||||| |||||||||| GTACAGTTAT TGCTTTATTC TTCGCCTTCT ACAATGGTGA CTGGCAATCA GATCCCGTAG 120 GATCAGCCAC AGTTTTGTTG AGCGTCTCTT CTGTTCTTGG TCAAGGGGGG CAGCCAGAGA 86387 |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| GATCAGCCAC AGTTTTGTTA AGCGTCTTTT CTGTTCTTGG TCAAGGGGGG CAGCCAGAGA 180 CAGTCCTGGA AGCTCTATCC CACTGCATGG AGCAAACATG CTCATCAGCC TTCAGACACA 86447 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCCTGAA AGCTCTATCC CACTGCATGG AGCAAACATG CTCATCAGCC TTCAGACACA 240 CGGGGGGCCT GCAATTCGCA TTGGGGCTAA TCAACGACAC AATAACCCTT CTTCATCTTG 86507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGGGGCCT GCAATTCGCA TTGGGGCTAA TCAACGACAC AATAACCCTT CTTCATCTTG 300 ATACTCCAGC CGTAGTTTGC CTGCTTTGTG ACCTAAGGAG ACTAATCCAA CACGCAGAGA 86567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTCCAGC CGTAGTTTGC CTGCTTTGTG ACCTAAGGAG ACTAATCCAA CACGCAGAGA 360 AGGATTTGAA GTCGGAGAAG TACTGCAAGT CCAAAAGTTC TGAAATGAAA ACGAAGCTCA 86627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTTGAA GTCGGAGAAG TACTGCAAGT CCAAAAGTTC TGAAATGAAA ACGAAGCTCA 420 AGTCTGCAGA AAGGAAGGTT TATTTTATCA TGTGTTGGGC TCACGAGCAG CCAAAAGAAG 86687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTGCAGA AAGGAAGGTT TATTTTATCA TGTGTTGGGC TCACGAGCAG CCAAAAGAAG 480 CATGGTCTTC CATAGCAGCC ATTGTCGAGG CAGAGAAGAG CCGACTAGTT GAATTCGTAG 86747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGTCTTC CATAGCAGCC ATTGTCGAGG CAGAGAAGAG CCGACTAGTT GAATTCGTAG 540 GGAGTAAAAC AAGTGTTCCA AAAATGACGA AAGTACAGAG TGAGGGCAGG CCTCTGATTA 86807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTAAAAC AAGTGTTCCA AAAATGACGA AAGTACAGAG TGAGGGCAGG CCTCTGATTA 600 AGGAGGTTGA ATAACTGTCT GTTCCTTCTG CATGACAAGC TGCAGCAGAT AACACAAGAT 86867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGTTGA ATAACTGTCT GTTCCTTCTG CATGACAAGC TGCAGCAGAT AACACAAGAT 660 CAGTGATGCT TGCAAAAATG TTAAGTTCAG ATCACTGAGT TTTGACTTTG TATAATTGCC 86927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGATGCT TGCAAAAATG TTAAGTTCAG ATCACTGAGT TTTGACTTTG TATAATTGCC 720 TGAATTATTT TATTCACTTT CTCTTTGGAA CTTTTTCATG GGCCACTGAA ACAATTTAAG 86987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTATTT TATTCACTTT CTCTTTGGAA CTTTTTCATG GGCCACTGAA ACAATTTAAG 780 AGAAGAAAAG CAAAAGCTTA TATGGAAAAG AGATAATTTA CTTATCTA 87035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGAAGAAAAG CAAAAGCTTA TATGGAAAAG AGATAATTTA CTTATCTA 828 hqPGS_C08SLm0006K11.1+_SGN-U340134- (86210 87035) ******************************************************************************** EST sequence 4 +strand 705 n (File: SGN-U324298+) 1 TGAGGGTTTC AAGATGAGTA ATAGCTTGAA GGCATCAAGG TTTCCTTTTT GTGCTGTTGT 61 AATGGCTGCG ACAAACCAAA GGATTGCTCT GCTTCAGCAG GTTGAGGGGC CAAAATCTCC 121 TGATGAACTG CTTACTGCAC TTCAAAGGGT GCTCGAGGAA AGTGCACCTG TGCTTGTTTC 181 TGCCAGGCTT GAAGCAGAAG AAAGGAGAAA TAATATTAGA CTAAGAGAGG AGCAGGATGC 241 TGCTTATCGT GCTGCACTAG AGGCTGATCA GGCTAGAGAG CGTCAGAGGC AAGAAGAGCA 301 AGAGCGGCAG GAAAGGGAAG CTGCTGAAGC TGAAAGGAAA AGAAAGGAGG AAGAAGAGGC 361 TCGTGAAAGA GCAGCTCGTG AAGCTGCTGA AAGAGAAGCT GCATTGGCTA AAATGCGCGA 421 GGAGAAATTA CAGTCACTGG GCCCTGAACC TGCAAAGGGT CCCGATGTTA CTCAAGTTTT 481 GGTAAGGTTT CCTACTGGTG AGCGCAAAGA GAGAAGATTT CAATGTAGTA CAACTATACA 541 ATCTCTGTAT GACTATGTTG ATTCTCTTGG ATGCCTAGAG GTTGAAAAGT ACAGTCTCGT 601 GTCCAACTTC CCTCGTACAG TCTATGGCTC AGAGAAGCTC GCTCTGTCGT TGAAAGATGC 661 TGGATTACAC CCTCAGGCCA GCCTTTTTGT TGAGTTGAAC TCATG Predicted gene structure (within gDNA segment 87620 to 91744): Exon 1 88220 88319 ( 100 n); cDNA 1 100 ( 100 n); score: 1.000 Intron 1 88320 90239 (1920 n); Pd: 1.000 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 90240 90410 ( 171 n); cDNA 101 271 ( 171 n); score: 1.000 Intron 2 90411 90508 ( 98 n); Pd: 1.000 (s: 1.00), Pa: 0.781 (s: 1.00) Exon 3 90509 90712 ( 204 n); cDNA 272 475 ( 204 n); score: 1.000 Intron 3 90713 90904 ( 192 n); Pd: 0.972 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 90905 91134 ( 230 n); cDNA 476 705 ( 230 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-U324298+ 1.000 705 1.000 C PGS_C08SLm0006K11.1+_SGN-U324298+ (88220 88319,90240 90410,90509 90712,90905 91134) Alignment (genomic DNA sequence = upper lines): TGAGGGTTTC AAGATGAGTA ATAGCTTGAA GGCATCAAGG TTTCCTTTTT GTGCTGTTGT 88279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGGTTTC AAGATGAGTA ATAGCTTGAA GGCATCAAGG TTTCCTTTTT GTGCTGTTGT 60 AATGGCTGCG ACAAACCAAA GGATTGCTCT GCTTCAGCAG GTAAACAAAA AGTTATATGA 88339 |||||||||| |||||||||| |||||||||| |||||||||| AATGGCTGCG ACAAACCAAA GGATTGCTCT GCTTCAGCAG .......... .......... 100 GTGTTTTGTT TTATATTGCT GTATAATATG GTGCAGTTAT CCAGAACTAG AAGTTGCTTT 88399 .......... .......... .......... .......... .......... .......... 100 ATTTAGTTAG AGACTAGCTT TATATTACGT GTTGGAAAAT ATAAATTCTA GACCGTATAG 88459 .......... .......... .......... .......... .......... .......... 100 GGATCACTAA CTCAAAGTAG TCAGCAGAAT CATCTGGATA AACTTGGGAT TTCTTGAGAA 88519 .......... .......... .......... .......... .......... .......... 100 GTAAATCCTT GAAACTATTC CTTCCACAAG TTCAAGCATC TGTAGCTTTT TAGTGTGATA 88579 .......... .......... .......... .......... .......... .......... 100 AAGGCCTCTA TAACTTGTTA ACAGTCTTTT ATATTGGTTA ACCCTGTATA GAAGAACCCA 88639 .......... .......... .......... .......... .......... .......... 100 TATGACATAT CACAAGACAA TGCATGTGAA AATATGATTT TTTTTATGGA TTGCATGACT 88699 .......... .......... .......... .......... .......... .......... 100 TTATTTAAGG ACTTTGGTCG ACAATATTGG ACTGGGACAA AGAAATGATG ACATTAACCA 88759 .......... .......... .......... .......... .......... .......... 100 GTTTGTTGAC CTACCTAATT TTGCATGAGA TGCTCTTGAG TTTGTCAAGC ACTCAAGCCT 88819 .......... .......... .......... .......... .......... .......... 100 CTATCGGTCA GGCCTGAACT TTGTTCTGTT TTTAGCCTAA TGGATTGGCT AGAAGCCTAG 88879 .......... .......... .......... .......... .......... .......... 100 GATGTATTTG CTTACACACA ATGCATATCG ACTGTTTCTT ATGTCATTAA TAATGAAGTC 88939 .......... .......... .......... .......... .......... .......... 100 CATATGAGGA AATGAGAGAC TTTTTGTTAG CAACGTTGGT TAGTTCAAGA GGATCAAATT 88999 .......... .......... .......... .......... .......... .......... 100 GATTATGGGA TATAAGATGA TATAATTGCT TATTTACTCC AAGTAGGTTT TTCTGGCTAT 89059 .......... .......... .......... .......... .......... .......... 100 TTGTTTTAAC TTCGTCATAC TGTTATACTT GTAAGTATCT GGAAGTTTCT TTCAAATTAT 89119 .......... .......... .......... .......... .......... .......... 100 GTAGACTTAT AGTGTGTCTT GGGTGTATAT AATTGTTGTA TGCTTATCTA AGATGATATC 89179 .......... .......... .......... .......... .......... .......... 100 AGAGATTTAG ATGTTGATGG CTTATGGATG TTTTGTCCCT CTTTTTGTTA CTTAATTATA 89239 .......... .......... .......... .......... .......... .......... 100 ACCTTGGATC ATATAGAGAG AAATGTGGCT GATCCTATGA CTCTATGTCA CCTTTTTCCT 89299 .......... .......... .......... .......... .......... .......... 100 ATCCAGAGTC AAACCTTGCG CTTCCTGCAT AGATATCAGT GCACGTATAC TTACAAAAGA 89359 .......... .......... .......... .......... .......... .......... 100 AATAAAAATC AGGGCTGTTC CATTCTTAAA AAAAAAGTTG AAAAGATCAG GGTATATATG 89419 .......... .......... .......... .......... .......... .......... 100 TATAAAGCAG TAATCTGGTT AATATCTGCT GGCTTCTACA AACTTGACAC CTTAAAGAAA 89479 .......... .......... .......... .......... .......... .......... 100 AGGGAAAAAG TAACTGTCAC AAAAAAATCA TTATTTTGGA ACAATGTTCT AGTATTTTTT 89539 .......... .......... .......... .......... .......... .......... 100 GTTAAGTTAA AAGAGTGTGC ATTGGTATGA ATAATATGAT TGTCTTTAGA GGCAGGCTGG 89599 .......... .......... .......... .......... .......... .......... 100 TTACCTCTTG CAGACAACAT TATCCTCAAT TCTCTTCCTT TTTTTTGGGT CAACCCCTAA 89659 .......... .......... .......... .......... .......... .......... 100 TTCTCTTTTA CGTGTCACTG TTCTTGCAAG CTCAGTTTTT TTCGCTTCCT TGTCTTCTGT 89719 .......... .......... .......... .......... .......... .......... 100 TATCGGTACA TGTTCATGAT GTTAGAAGCT ATAGTTTTGA AACTAAACAC CCCTTTCGAG 89779 .......... .......... .......... .......... .......... .......... 100 TGTGGTCTGG GGATATCTCT TTCTGTCTCT AGCAACTATC TTAAAAGACC TTACATTGAT 89839 .......... .......... .......... .......... .......... .......... 100 TAACACCGGT TAGCTTTTGG CCCTGTTTAA TTTTGTGCTT CATTGTTTGG CCTAGTCGAT 89899 .......... .......... .......... .......... .......... .......... 100 TTGATTAATA GGAAATGTTT TGTCATTCAG TGGGTACATA TCACATACAG ATTTTTCTGC 89959 .......... .......... .......... .......... .......... .......... 100 GGTTTTAAGT TAGATCTGCC CTTTTCTTTT GTCTTAATCC TTCTTAGCTA TCTACCATAA 90019 .......... .......... .......... .......... .......... .......... 100 GCTAGATATT GAGGCTTGTG CCTTTTGTTG TGAAAAGCTA ATTAAAGTTC TATTTTCCTT 90079 .......... .......... .......... .......... .......... .......... 100 GTTATATACC AAAAGAACTG CAAATTCATA CCAGATACTA TCTAATGTTT AGTGTAGAAG 90139 .......... .......... .......... .......... .......... .......... 100 CGAACTTATG GGCCTGCCTT TTTCTATTAA AGCTGCTTGA TTGACCTCTC CTTTACTTGG 90199 .......... .......... .......... .......... .......... .......... 100 ATGGCTTTTT GTATATCATA GTCTGATGAG CACTTTGCAG GTTGAGGGGC CAAAATCTCC 90259 |||||||||| |||||||||| .......... .......... .......... .......... GTTGAGGGGC CAAAATCTCC 120 TGATGAACTG CTTACTGCAC TTCAAAGGGT GCTCGAGGAA AGTGCACCTG TGCTTGTTTC 90319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGAACTG CTTACTGCAC TTCAAAGGGT GCTCGAGGAA AGTGCACCTG TGCTTGTTTC 180 TGCCAGGCTT GAAGCAGAAG AAAGGAGAAA TAATATTAGA CTAAGAGAGG AGCAGGATGC 90379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAGGCTT GAAGCAGAAG AAAGGAGAAA TAATATTAGA CTAAGAGAGG AGCAGGATGC 240 TGCTTATCGT GCTGCACTAG AGGCTGATCA GGTATGTAGT TTTAGGTTTT AAAATAGGCT 90439 |||||||||| |||||||||| |||||||||| | TGCTTATCGT GCTGCACTAG AGGCTGATCA G......... .......... .......... 271 TTAGCAGTTC AATTTTGAGA AAGGGTACAA AGTAATTTGT GTGCTGCTGA ACTGTTCGTC 90499 .......... .......... .......... .......... .......... .......... 271 CTATACCAGG CTAGAGAGCG TCAGAGGCAA GAAGAGCAAG AGCGGCAGGA AAGGGAAGCT 90559 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CTAGAGAGCG TCAGAGGCAA GAAGAGCAAG AGCGGCAGGA AAGGGAAGCT 322 GCTGAAGCTG AAAGGAAAAG AAAGGAGGAA GAAGAGGCTC GTGAAAGAGC AGCTCGTGAA 90619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAGCTG AAAGGAAAAG AAAGGAGGAA GAAGAGGCTC GTGAAAGAGC AGCTCGTGAA 382 GCTGCTGAAA GAGAAGCTGC ATTGGCTAAA ATGCGCGAGG AGAAATTACA GTCACTGGGC 90679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGAAA GAGAAGCTGC ATTGGCTAAA ATGCGCGAGG AGAAATTACA GTCACTGGGC 442 CCTGAACCTG CAAAGGGTCC CGATGTTACT CAAGTAATCA TCTTGTTCAT GTCTCTTTTA 90739 |||||||||| |||||||||| |||||||||| ||| CCTGAACCTG CAAAGGGTCC CGATGTTACT CAA....... .......... .......... 475 TTTAAACGTG CATCCGTCTA TGTCATAATG CTAGATACAA GGTTGTTTCT ATTGGTTTTG 90799 .......... .......... .......... .......... .......... .......... 475 AGTAAGCAAC GAGAAAACTT GCGAGTCAAA TACACATTAA AAATGCAGTA GAAATTGCTA 90859 .......... .......... .......... .......... .......... .......... 475 CTTTTCAGAT GATTAAATTC TTTGTTGGTT TCTTGTATCC TGCAGGTTTT GGTAAGGTTT 90919 ||||| |||||||||| .......... .......... .......... .......... .....GTTTT GGTAAGGTTT 490 CCTACTGGTG AGCGCAAAGA GAGAAGATTT CAATGTAGTA CAACTATACA ATCTCTGTAT 90979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTGGTG AGCGCAAAGA GAGAAGATTT CAATGTAGTA CAACTATACA ATCTCTGTAT 550 GACTATGTTG ATTCTCTTGG ATGCCTAGAG GTTGAAAAGT ACAGTCTCGT GTCCAACTTC 91039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTATGTTG ATTCTCTTGG ATGCCTAGAG GTTGAAAAGT ACAGTCTCGT GTCCAACTTC 610 CCTCGTACAG TCTATGGCTC AGAGAAGCTC GCTCTGTCGT TGAAAGATGC TGGATTACAC 91099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCGTACAG TCTATGGCTC AGAGAAGCTC GCTCTGTCGT TGAAAGATGC TGGATTACAC 670 CCTCAGGCCA GCCTTTTTGT TGAGTTGAAC TCATG 91134 |||||||||| |||||||||| |||||||||| ||||| CCTCAGGCCA GCCTTTTTGT TGAGTTGAAC TCATG 705 hqPGS_C08SLm0006K11.1+_SGN-U324298+ (88220 88319,90240 90410,90509 90712,90905 91134) ******************************************************************************** EST sequence 20 +strand 838 n (File: SGN-U321050+) 1 AGTTTTTTTT TTTTTTTTTG TCATTGCGGA GAACAGTTAG AGAGCAATCA TCGGAAAATT 61 CTTAATGAAC ACATAACAAG CAAAAACTTT CACCGGAAAA TTGTAGAGGA ATCGGAAAAA 121 ATGGGTGATG TAGCCGATAA GATAGCATAT TTTCAAGCGA TCACCGGGGT GGAAGACACC 181 GATTTGTGCA CTGAGATCCT CGCCGCCCAT GGCTGGGATC TCGAACTGGC GATCTCTGTT 241 TTTACCTCGC AAAATCACCA TCCTGCTACT GAGTATGCAT CCGAACCCAC CACCTCCGAT 301 ACACCACCAA CGAGCACGAA TCAACCACCG GCAGAAACTG GGCTCGTTGC CGGTGGCAGC 361 GGCGGACCGC CGGGATTAGC TTGGAAGATT ATTACTCTCC CCTTCTCCAT CATTTCTGGC 421 AGTCTAGGAT TGATTTCAGG TGCTGTGGGG TTGGGTGTAT GGGCGGCAGG TGGTGTACTT 481 TCGTATTCGT TGAGAATGAT CGGTTTCAAT TTGGGGCGAA ATAGTGAATC CTCTTCACCT 541 TTGGTATCTG TAACTGCATC AGCAGCGGAG GCAATGAGTT TCGTGGATAG TTTTGATAGG 601 GATTTTGGGA GTATTAGGCC GAGTTTTATT GCTGAAGGTT TTATGGATGC TTTGCAGAGG 661 TCTAGGCATG AGTTCAAGCT GTTTTTTGTG TATTTACATT CGCCTGAGCA TCCAGATACC 721 CCTGTGTTTT GTGAAAGGAC TTTGTGTAAT GAAGCATTGG TAGCATTTAT CAATGAGAAT 781 TTTGTTGCTT GGGGCGGGAG TATTAGAGCT AGTGAGGGTT TCAAGATGAG TAATAGCT Predicted gene structure (within gDNA segment 86547 to 88855): Exon 1 87415 88245 ( 831 n); cDNA 8 838 ( 831 n); score: 0.994 MATCH C08SLm0006K11.1+ SGN-U321050+ 0.994 831 0.992 C PGS_C08SLm0006K11.1+_SGN-U321050+ (87415 88245) Alignment (genomic DNA sequence = upper lines): TTTTCTTTTA TTGTCATTTC ATAGAACAGT TAGAGAGCAA TCATCGGAAA ATTCTTAATG 87474 |||| |||| |||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT TTGTCATTGC GGAGAACAGT TAGAGAGCAA TCATCGGAAA ATTCTTAATG 67 AACACATAAC AAGCAAAAAC TTTCACCGGA AAATTGTAGA GGAATCGGAA AAAATGGGTG 87534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACATAAC AAGCAAAAAC TTTCACCGGA AAATTGTAGA GGAATCGGAA AAAATGGGTG 127 ATGTAGCCGA TAAGATAGCA TATTTTCAAG CGATCACCGG GGTGGAAGAC ACCGATTTGT 87594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGCCGA TAAGATAGCA TATTTTCAAG CGATCACCGG GGTGGAAGAC ACCGATTTGT 187 GCACTGAGAT CCTCGCCGCC CATGGCTGGG ATCTCGAACT GGCGATCTCT GTTTTTACCT 87654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTGAGAT CCTCGCCGCC CATGGCTGGG ATCTCGAACT GGCGATCTCT GTTTTTACCT 247 CGCAAAATCA CCATCCTGCT ACTGAGTATG CATCCGAACC CACCACCTCC GATACACCAC 87714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAAAATCA CCATCCTGCT ACTGAGTATG CATCCGAACC CACCACCTCC GATACACCAC 307 CAACGAGCAC GAATCAACCA CCGGCAGAAA CTGGGCTCGT TGCCGGTGGC AGCGGCGGAC 87774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGCAC GAATCAACCA CCGGCAGAAA CTGGGCTCGT TGCCGGTGGC AGCGGCGGAC 367 CGCCGGGATT AGCTTGGAAG ATTATTACTC TCCCCTTCTC CATCATTTCT GGCAGTCTAG 87834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGGGATT AGCTTGGAAG ATTATTACTC TCCCCTTCTC CATCATTTCT GGCAGTCTAG 427 GATTGATTTC AGGTGCTGTG GGGTTGGGTG TATGGGCGGC AGGTGGTGTA CTTTCGTATT 87894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGATTTC AGGTGCTGTG GGGTTGGGTG TATGGGCGGC AGGTGGTGTA CTTTCGTATT 487 CGTTGAGAAT GATCGGTTTC AATTTGGGGC GAAATAGTGA ATCCTCTTCA CCTTTGGTAT 87954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTGAGAAT GATCGGTTTC AATTTGGGGC GAAATAGTGA ATCCTCTTCA CCTTTGGTAT 547 CTGTAACTGC ATCAGCAGCG GAGGCAATGA GTTTCGTGGA TAGTTTTGAT AGGGATTTTG 88014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTAACTGC ATCAGCAGCG GAGGCAATGA GTTTCGTGGA TAGTTTTGAT AGGGATTTTG 607 GGAGTATTAG GCCGAGTTTT ATTGCTGAAG GTTTTATGGA TGCTTTGCAG AGGTCTAGGC 88074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTATTAG GCCGAGTTTT ATTGCTGAAG GTTTTATGGA TGCTTTGCAG AGGTCTAGGC 667 ATGAGTTCAA GCTGTTTTTT GTGTATTTAC ATTCGCCTGA GCATCCAGAT ACCCCTGTGT 88134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGTTCAA GCTGTTTTTT GTGTATTTAC ATTCGCCTGA GCATCCAGAT ACCCCTGTGT 727 TTTGTGAAAG GACTTTGTGT AATGAAGCAT TGGTAGCATT TATCAATGAG AATTTTGTTG 88194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTGAAAG GACTTTGTGT AATGAAGCAT TGGTAGCATT TATCAATGAG AATTTTGTTG 787 CTTGGGGCGG GAGTATTAGA GCTAGTGAGG GTTTCAAGAT GAGTAATAGC T 88245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CTTGGGGCGG GAGTATTAGA GCTAGTGAGG GTTTCAAGAT GAGTAATAGC T 838 hqPGS_C08SLm0006K11.1+_SGN-U321050+ (87415 88245) ******************************************************************************** EST sequence 5 +strand 672 n (File: SGN-U324299+) 1 GCACTAGAAG CTGATCAAGC TAGAGAGCGC CAGAGGATAG AAGAGCAAGA GAGGCTGGAG 61 AGGGAAGCTG CTGAAGCTGA AAGGAAAAGA AAGGAGGAAG AAGAGGCCCG GGAAAGAGCA 121 GCACATGAAG CTGCTGAAAG AGAAGCTGCA TTAGTAAAAA TACGCCAGGA GAAGCTATTG 181 TCATTGGGCC CTGAACCTGA GAAGGGTCCT GATGTTACCC AGGTTTTGGT ACGGTTTCCT 241 ACTGGAGAGC GCAAGGAGAG GAGATTTCAT TGTACTACAA CATTACAGTC GTTGTATGAC 301 TATGTCGATT CTCTAGGATG CCTAGCGGTT GAGAACTACA GTCTTGTATC CAACTTCCCT 361 CGCACTGTAT ATGGTTCAGA GAAGCTCAGT TTGTCCCTGA AAGATGCCGG ATTACATCCT 421 CAGGCCAGCC TTTTTATCGA ATTGAGCTAA ATGAGAACTT TAGAAGTCGG TATGGTTTAG 481 AAAATTTTCC TACTATAATG TTTGTAATTC GTCAGAGTAG TTTTAGCAAT TGAATTCAAT 541 AGAAAAAATT GTTTCCTATA CTGTTCTTTT GTTTCTGTGA CAACAAATAA ATAAGCGAAT 601 GGATTTTACT TGTGGTAGCA AATTTTAGTA CACATTTGTA AAGAAGCTTG TTTTCCTGTA 661 AAAAAAAAAA AA Predicted gene structure (within gDNA segment 89351 to 96452): Exon 1 90393 90410 ( 18 n); cDNA 1 18 ( 18 n); score: 0.889 Intron 1 90411 90508 ( 98 n); Pd: 1.000 (s: 0), Pa: 0.781 (s: 0.88) Exon 2 90509 90712 ( 204 n); cDNA 19 222 ( 204 n); score: 0.877 Intron 2 90713 90904 ( 192 n); Pd: 0.972 (s: 0.80), Pa: 1.000 (s: 0.90) Exon 3 90905 91153 ( 249 n); cDNA 223 471 ( 249 n); score: 0.825 Intron 3 91154 93950 (2797 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0) Exon 4 93951 93974 ( 24 n); cDNA 472 493 ( 22 n); score: 0.708 Intron 4 93975 94441 ( 467 n); Pd: 0.862 (s: 0), Pa: 0.676 (s: 0) Exon 5 94442 94452 ( 11 n); cDNA 494 504 ( 11 n); score: 0.727 Intron 5 94453 94994 ( 542 n); Pd: 0.000 (s: 0), Pa: 0.680 (s: 0) Exon 6 94995 95031 ( 37 n); cDNA 505 540 ( 36 n); score: 0.622 PPA cDNA 660 672 MATCH C08SLm0006K11.1+ SGN-U324299+ 0.849 543 0.808 C PGS_C08SLm0006K11.1+_SGN-U324299+ (90393 90410,90509 90712,90905 91153,93951 93974,94442 94452,94995 95031) Alignment (genomic DNA sequence = upper lines): GCACTAGAGG CTGATCAGGT ATGTAGTTTT AGGTTTTAAA ATAGGCTTTA GCAGTTCAAT 90452 |||||||| | ||||||| GCACTAGAAG CTGATCAA.. .......... .......... .......... .......... 18 TTTGAGAAAG GGTACAAAGT AATTTGTGTG CTGCTGAACT GTTCGTCCTA TACCAGGCTA 90512 |||| .......... .......... .......... .......... .......... ......GCTA 22 GAGAGCGTCA GAGGCAAGAA GAGCAAGAGC GGCAGGAAAG GGAAGCTGCT GAAGCTGAAA 90572 ||||||| || |||| |||| ||||||||| ||| ||| || |||||||||| |||||||||| GAGAGCGCCA GAGGATAGAA GAGCAAGAGA GGCTGGAGAG GGAAGCTGCT GAAGCTGAAA 82 GGAAAAGAAA GGAGGAAGAA GAGGCTCGTG AAAGAGCAGC TCGTGAAGCT GCTGAAAGAG 90632 |||||||||| |||||||||| ||||| || | |||||||||| | ||||||| |||||||||| GGAAAAGAAA GGAGGAAGAA GAGGCCCGGG AAAGAGCAGC ACATGAAGCT GCTGAAAGAG 142 AAGCTGCATT GGCTAAAATG CGCGAGGAGA AATTACAGTC ACTGGGCCCT GAACCTGCAA 90692 |||||||||| | ||||| ||| |||||| | || ||| | |||||||| ||||||| | AAGCTGCATT AGTAAAAATA CGCCAGGAGA AGCTATTGTC ATTGGGCCCT GAACCTGAGA 202 AGGGTCCCGA TGTTACTCAA GTAATCATCT TGTTCATGTC TCTTTTATTT AAACGTGCAT 90752 ||||||| || |||||| || AGGGTCCTGA TGTTACCCAG .......... .......... .......... .......... 222 CCGTCTATGT CATAATGCTA GATACAAGGT TGTTTCTATT GGTTTTGAGT AAGCAACGAG 90812 .......... .......... .......... .......... .......... .......... 222 AAAACTTGCG AGTCAAATAC ACATTAAAAA TGCAGTAGAA ATTGCTACTT TTCAGATGAT 90872 .......... .......... .......... .......... .......... .......... 222 TAAATTCTTT GTTGGTTTCT TGTATCCTGC AGGTTTTGGT AAGGTTTCCT ACTGGTGAGC 90932 |||||||| | |||||||| ||||| |||| .......... .......... .......... ..GTTTTGGT ACGGTTTCCT ACTGGAGAGC 250 GCAAAGAGAG AAGATTTCAA TGTAGTACAA CTATACAATC TCTGTATGAC TATGTTGATT 90992 |||| ||||| |||||||| |||| ||||| | |||| || |||||||| ||||| |||| GCAAGGAGAG GAGATTTCAT TGTACTACAA CATTACAGTC GTTGTATGAC TATGTCGATT 310 CTCTTGGATG CCTAGAGGTT GAAAAGTACA GTCTCGTGTC CAACTTCCCT CGTACAGTCT 91052 |||| ||||| ||||| |||| || || |||| |||| || || |||||||||| || || || | CTCTAGGATG CCTAGCGGTT GAGAACTACA GTCTTGTATC CAACTTCCCT CGCACTGTAT 370 ATGGCTCAGA GAAGCTCGCT CTGTCGTTGA AAGATGCTGG ATTACACCCT CAGGCCAGCC 91112 |||| ||||| ||||||| | |||| ||| ||||||| || |||||| ||| |||||||||| ATGGTTCAGA GAAGCTCAGT TTGTCCCTGA AAGATGCCGG ATTACATCCT CAGGCCAGCC 430 TTTTTGTTGA GTTGAACT-C ATGAGAACGA TTGCTGTCTT GTGCTAGAGT TGATAACTTT 91171 ||||| | || |||| || |||||||| | | ||| || TTTTTATCGA ATTGAGCTAA ATGAGAACTT TAGAAGTC-G GT........ .......... 471 TGTTGAAAAT GGTTGTATGT GAATTAGAAC TGGGCAATGA ATTCAATTAG ATGCAGTTTT 91231 .......... .......... .......... .......... .......... .......... 471 GTGTATTGTA CCCTTGTTAA ATAATTTTCT ACTGCTTTAA CGTTAAGTTT CTGTTAATAG 91291 .......... .......... .......... .......... .......... .......... 471 ATAATTGAAT ACATATATAG TTCAATTGTA ATTGGCTGTA AATGAATGAT CACTTGGTCT 91351 .......... .......... .......... .......... .......... .......... 471 AGCAGATTAT CGTTATATTC ACATGGAACT CCAGATTGCA AATGGATTCA GGTGCCAACT 91411 .......... .......... .......... .......... .......... .......... 471 TTTGATTGCA TTTATCATGA TTTATCAGTA GTGTGTCAAT TCTATAAAAA CTTGTCCACA 91471 .......... .......... .......... .......... .......... .......... 471 CCGAAATGTT AACACCAACC AATCACATAC GTCTGGTTTA TATAAACACC AAGAGTGGGT 91531 .......... .......... .......... .......... .......... .......... 471 AAGTATAGAT TTGTCTGTCT TGGAGTGAAA ATCACCGAGA AATGTTACTC ATATCTAACA 91591 .......... .......... .......... .......... .......... .......... 471 ATTAAGAATG AGAACAAGCC ATCCAACAAA TACATGTAAG TTATTGTTGA AAAGAATACC 91651 .......... .......... .......... .......... .......... .......... 471 AATTGAAATT GATTGATTAT ATATCAAAAC AAGCGCCCGA TTTGGCAAAA ATAACTTTGC 91711 .......... .......... .......... .......... .......... .......... 471 TGCTTGATGA TGCCTGAAAG TTAACAAAAT GTAGCAATGA GATTAGTCTA AGACGCAAGC 91771 .......... .......... .......... .......... .......... .......... 471 AGGCAAAGCT TGGAGTGGAA TTGATGATGC CTGAATGTTA ACAAAATGTA GCAATGAGAT 91831 .......... .......... .......... .......... .......... .......... 471 TAGTCTAAGA CACAAGCAGG CAAAGCTTGG AGAAAGAAAA AAGTACAAAA ATGGCTTCGC 91891 .......... .......... .......... .......... .......... .......... 471 CCGGAGACCT TCAGTGTGTT AGACTGACGT GATAACCAAC TACACCACGA AACCCTGTTA 91951 .......... .......... .......... .......... .......... .......... 471 TTCAAAAGTA CCAATTTGTT TATAAACATA TAAGTTTTAG ACACTAATTA CGTTTAACAT 92011 .......... .......... .......... .......... .......... .......... 471 TGTAATACGT GGCTAATTAG ATGTTAAATC AACGGCGATT AGCAAGTTGA TTATTTGAAG 92071 .......... .......... .......... .......... .......... .......... 471 TTGACAAATT ATTAACCCTT TAACTCAAAA ACTGCCATTT TTCCAGCTGC TTCTCTCTTC 92131 .......... .......... .......... .......... .......... .......... 471 TCCATTCCCC TAAATTCTCT ATTAACAAAC TATGATTTTT TAGGGATTTT GAGATTTGTT 92191 .......... .......... .......... .......... .......... .......... 471 TGCCCTAATT AGCTATATGC GTTTCAATAC TGTGTCCGAT TGTTAATCAG TTGAATTCTT 92251 .......... .......... .......... .......... .......... .......... 471 CAAATGGGGG TTCTCAATTT TTCCGGTTTA ATTTTGCTGA AAGCTGAGCT TTTTCAATTC 92311 .......... .......... .......... .......... .......... .......... 471 CAATTCCGAT TTGGAAGAGT TATTGATTCC TATTCTGTCG CCTGTGAAGC ATTTTCTGAA 92371 .......... .......... .......... .......... .......... .......... 471 CCTTTTCTTT GATTTCATTA ATTTTCTTCT TCTCTAGGTT TACTTCTTTT TTTGTGTTAT 92431 .......... .......... .......... .......... .......... .......... 471 TTTTTTTTGT TTCTGGGTGT GGAGAGATGA ATTCTGCCTG TTCTTGGTTT GAAAAAGTGA 92491 .......... .......... .......... .......... .......... .......... 471 AATTAGATGA ACCTGAAATT GTTGAAGTGT CACCAGACGA GAGATATATT CGGGTAATTT 92551 .......... .......... .......... .......... .......... .......... 471 CTGTGTTTTT TTTCTCTTCT CTATGTATAC TTGCCAAGTT TCTATTTTTA GGATTATCTG 92611 .......... .......... .......... .......... .......... .......... 471 ATAACACAAC TGTAGGTCCC GCTTGTTGTA CTATTGTTCA TTTCATTTTA TAAGTTAATG 92671 .......... .......... .......... .......... .......... .......... 471 CTAGAAAATT GTGGTAGTTG TATCATTTGA TTTGAAAGTG AGTCTTGTTA AAAAGGGCTT 92731 .......... .......... .......... .......... .......... .......... 471 ATCCCATACA AAGGGTGAGC GCATTGCATT CAAGGGAGTG GTGTAGTCGT CAATGAAGTG 92791 .......... .......... .......... .......... .......... .......... 471 GTTGAGAGTC ATGAGATTTC AGGAGTTCCC TGTGGGGCTA TTACACGTAT TCCCCCTGGG 92851 .......... .......... .......... .......... .......... .......... 471 GTAGCTACAA GCATAAACCA GTTTAATAAA TAACGTAGAG TGATCACATG AATTATTTGC 92911 .......... .......... .......... .......... .......... .......... 471 AAGCTTGCTT GCGCACACGT GAGGAAGTTG AATCTCTCTA AGAATGGAGA ACCCCATATG 92971 .......... .......... .......... .......... .......... .......... 471 TGATATTGCT ATAAAGCACT GTAAGGTTTA TTAATCAACA AAGCAAAAAT AAAATTCTTA 93031 .......... .......... .......... .......... .......... .......... 471 AAAGATGAGA TAAATTCAGA AGCACTTGTT AGATAAAATA ACTAGGTGAT TCTTCCATTT 93091 .......... .......... .......... .......... .......... .......... 471 GTCTAAGCCT TGGTGGACAG TCACGAATGG TCATTAAAAA AAACACGAAG GGTGAGTGTA 93151 .......... .......... .......... .......... .......... .......... 471 TTGCTATTGT TATTCCTTAT GCTTGCCTTT CTGCAAAGGG TTCTTCAAGC ACCTATGAAG 93211 .......... .......... .......... .......... .......... .......... 471 AGAGTTGAGA GGTTCATGAA GTGTTTACTT TAGGTCAGAA AAAGCTTCAA AATCTTTATA 93271 .......... .......... .......... .......... .......... .......... 471 AAAGGAAGAA AGATCGTCAA CGATGTTATA AACTCAAAAT TTAATTTTGA GACATGATTG 93331 .......... .......... .......... .......... .......... .......... 471 TGATTGGTTA TCATATGATA TTAATTTTGT TTCTGTTTCA TTTGTGTAAT TTTGTGGGTT 93391 .......... .......... .......... .......... .......... .......... 471 TTGGTGGTAT TGTCACCTTC TTTTTGTTTC TCTTCCTCCA GTATAGTGAA ATCTTGGGAA 93451 .......... .......... .......... .......... .......... .......... 471 GTGGAGCATT TAAGACTGTG TATGGCTCCG ACACCCATCT CCTTTTATTT TTTGCGTTTG 93511 .......... .......... .......... .......... .......... .......... 471 AAGTCTTACC TCATCATCAT TATTCATTTT CAAGTTTTTA GCGATTTTCA AATCTTTTCA 93571 .......... .......... .......... .......... .......... .......... 471 TATGTAGCTA TAAGGCATTT GACAATATTG ATGGAATAGA AGTTGCCTGG AATCAAATTT 93631 .......... .......... .......... .......... .......... .......... 471 GCATAGATGA TGCTTTGCAG TCGCCTGAAC ATTTGGAGAG AACATATTCC GAGGTTCACT 93691 .......... .......... .......... .......... .......... .......... 471 TGTTGAAAAT GTTGAAGAAT GAGAACGTTA TAAAATTATA TACTTCATGG GTGGACGATG 93751 .......... .......... .......... .......... .......... .......... 471 TGAACAAAAG TATTAATATG ATCACCGAAT TATTTAGTTC AGGAAGCTTA AGGCAGTGAG 93811 .......... .......... .......... .......... .......... .......... 471 TACTATATTT CTTTCATATT TGCCCTTCTT ATTTATCTTT CATGCAACCT CCAGATCTTC 93871 .......... .......... .......... .......... .......... .......... 471 TTTTTCTTAC ATCTTTTGCA TTCTCTCCCT CTTAGCTATC GGACAAAGCA TAAGACGGTT 93931 .......... .......... .......... .......... .......... .......... 471 GACACTAAAG CCATTAAACA TTGGGCTAGA CAAATTCTCC AAGGTTTACA TTATCTCCAT 93991 | ||| |||| ||||| ||| | .......... .........A -TGGTTTAGA -AAATTTTCC TAC....... .......... 493 AGTCACAATC CACCGGTTAT ACATAGAGAC TTGAAATGTG ACAATATATT CATCAATGGA 94051 .......... .......... .......... .......... .......... .......... 493 AACCATGGAG AAGTTAAACT TGGAGATCTT GGATTGGCGA CAATTATGGA GCAACCTACT 94111 .......... .......... .......... .......... .......... .......... 493 GTTCGAAGTG TTATTGGTAG TTATTTGACT TAGACTTACT GTTTTGTCTC CATCAAAACT 94171 .......... .......... .......... .......... .......... .......... 493 AATTGTTAAC CCCTCTTGCC ATTCTTTGTG TTTTCTCTTT ATCAGGTACC CCTGAATTTA 94231 .......... .......... .......... .......... .......... .......... 493 TGGCGCCTGA GCTATATGAT GAAGAATATA ATGAACTTGT TGACATTTAT TCTTTTGGCA 94291 .......... .......... .......... .......... .......... .......... 493 TGTGCATCTT GGAGCTAATA ACATGTGAAT ATCCATATAA TGAGTGTAGA AATCAAGCAC 94351 .......... .......... .......... .......... .......... .......... 493 AAATTTATAA GAAAGTCACG TCGGTGAGTT TTAGTTGTTT TGGGCTTTTA CTGTTACTTT 94411 .......... .......... .......... .......... .......... .......... 493 ATTCTACTTG AAAATAATTG CAATGCTAAG GAAAATATTT GATTTCAGGG AATAAAGCCA 94471 | ||| ||| | .......... .......... .......... TATAATGTTT G......... .......... 504 GCGTCTTTAG CAAAAGTAGC AGATCCTCAT GTAAAACAAT TTGTCGAGAA ATGTTTGGCC 94531 .......... .......... .......... .......... .......... .......... 504 CCAGTATCAG TAAGATTGAG TGCAGCTGAA CTTTTGGAAG ACCCGTTTCT TTCATCTGAG 94591 .......... .......... .......... .......... .......... .......... 504 AGCTTGAAAA CCCCCGCATG TGATCATTTG CAGCCCACAA ATTTTGTGCC TGAAGCACAA 94651 .......... .......... .......... .......... .......... .......... 504 AGCTTGCCAA AGTCGATTTT CATGGATGTA GACCTTGCAC AAAAGATGCA CAGTGGCATG 94711 .......... .......... .......... .......... .......... .......... 504 TCCATAGAAA GCAAGACTGC ATCTCCTCAT TTTTCTAATC TAGAAATCGT GAGACGAAAT 94771 .......... .......... .......... .......... .......... .......... 504 GGGAGAAACG AATTTAGGTT ACAAGGTGAC AAGCATGATG ATCGTTCAAT TGTGTTTTCA 94831 .......... .......... .......... .......... .......... .......... 504 CTGCGAATAG CTGAATTGGC TGGTATTTGA TCATTCTTAC AGAATAATAC ATGGAGTATT 94891 .......... .......... .......... .......... .......... .......... 504 TGCAAGCAAA TGTTTGACTC TTTTCTCTAT TTTTAACAGG TCGGATCAGG CATGTGCACT 94951 .......... .......... .......... .......... .......... .......... 504 TTGTATATTG TATTGATGCT GACACTGTGA TGTCAATAGC TAGTGAGATG GCAGAGGAGC 95011 | | | ||||| || .......... .......... .......... .......... ...TAATTCG TCAGAGTAGT 521 TTGAGTTGTT GAATGACGAT 95031 || || || |||| | || TTTAGCAATT GAAT-TCAAT 540 hqPGS_C08SLm0006K11.1+_SGN-U324299+ (90393 90410,90509 90712,90905 91153,93951 93974) ******************************************************************************** EST sequence 21 +strand 445 n (File: SGN-U331280+) 1 TATTAACCCT TTAACTCAAA AACTGCCATG GTTCCAGCGG CTTCTCTCTT CTCCATTCCC 61 CTAAATTCTC TATTAACAAA CTATGATTTT TTAGGGATTT TGAGATTTGT TTGCCCTAAT 121 TAGCTATATG CGTTTCAATA CTGTGTCCGA TTGTTAATCA GTTGAATTCT TCAAATGGGG 181 GTTCTCAATT TTTCCGGTTT AATTTTGCTG AAAGCTGAGC TTTTTCAATT CCAATTCCGA 241 TTTGGAAGAG TTATTGATTC CTATTCTGTC GCCTGTGAAG CATTTTCTGA ACCTTTTCTT 301 TGATTTCATT AATTTTCTTC TTCTCTAGGT TTACTTCTTT TTTTGTGTTA TTTTTTTTTG 361 TTTCTGGGTG TGGAGAGATG AATTCTGCCT GTTCTTGGTT TGAAAAAGTG AAATTAGATG 421 AACCTGAAAT TGTTGAAGTG TCACC Predicted gene structure (within gDNA segment 91481 to 93135): Exon 1 92081 92525 ( 445 n); cDNA 1 445 ( 445 n); score: 0.993 MATCH C08SLm0006K11.1+ SGN-U331280+ 0.993 445 1.000 C PGS_C08SLm0006K11.1+_SGN-U331280+ (92081 92525) Alignment (genomic DNA sequence = upper lines): TATTAACCCT TTAACTCAAA AACTGCCATT TTTCCAGCTG CTTCTCTCTT CTCCATTCCC 92140 |||||||||| |||||||||| ||||||||| ||||||| | |||||||||| |||||||||| TATTAACCCT TTAACTCAAA AACTGCCATG GTTCCAGCGG CTTCTCTCTT CTCCATTCCC 60 CTAAATTCTC TATTAACAAA CTATGATTTT TTAGGGATTT TGAGATTTGT TTGCCCTAAT 92200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAATTCTC TATTAACAAA CTATGATTTT TTAGGGATTT TGAGATTTGT TTGCCCTAAT 120 TAGCTATATG CGTTTCAATA CTGTGTCCGA TTGTTAATCA GTTGAATTCT TCAAATGGGG 92260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTATATG CGTTTCAATA CTGTGTCCGA TTGTTAATCA GTTGAATTCT TCAAATGGGG 180 GTTCTCAATT TTTCCGGTTT AATTTTGCTG AAAGCTGAGC TTTTTCAATT CCAATTCCGA 92320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTCAATT TTTCCGGTTT AATTTTGCTG AAAGCTGAGC TTTTTCAATT CCAATTCCGA 240 TTTGGAAGAG TTATTGATTC CTATTCTGTC GCCTGTGAAG CATTTTCTGA ACCTTTTCTT 92380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAAGAG TTATTGATTC CTATTCTGTC GCCTGTGAAG CATTTTCTGA ACCTTTTCTT 300 TGATTTCATT AATTTTCTTC TTCTCTAGGT TTACTTCTTT TTTTGTGTTA TTTTTTTTTG 92440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTTCATT AATTTTCTTC TTCTCTAGGT TTACTTCTTT TTTTGTGTTA TTTTTTTTTG 360 TTTCTGGGTG TGGAGAGATG AATTCTGCCT GTTCTTGGTT TGAAAAAGTG AAATTAGATG 92500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTGGGTG TGGAGAGATG AATTCTGCCT GTTCTTGGTT TGAAAAAGTG AAATTAGATG 420 AACCTGAAAT TGTTGAAGTG TCACC 92525 |||||||||| |||||||||| ||||| AACCTGAAAT TGTTGAAGTG TCACC 445 hqPGS_C08SLm0006K11.1+_SGN-U331280+ (92081 92525) ******************************************************************************** EST sequence 31 -strand 771 n (File: SGN-U340745-) 1 ATAAGGGATT TTGCCGATTT CGGCCTATTG GTTAAAAAAT GAGCTGATTT AACAAAAATT 61 TAACGCGAAT TTTAACAAAA TATTAACGCT TACAATTTGC CATTCGCCAT TCAGGCTGCG 121 CAACTGTTGG GAAGGGCGAT CGGTGCGGGC CTCTTCGCTA TTACGCCAGC TGGCGAAAGG 181 GGGATGTGCT GCAAGGCGAT TAAGTTGGGT AACGCCAGGG TTTTCCCAGT CACGACGTTG 241 TAAAACGACG GCCAGTGAAT TGTAATACGA CTCACTATAG GGCGAATTGG GTACCGGGCC 301 CCCCCTCGAG TTTTTTTGTT TTTATTCTTT CTTTCCTATA ATTCAATTTT TATTTCTATT 361 TAGAGAGATA AAATTTTTGT CATGATTCAT GAACTAATGT ACTCTCTAAT TTTTTTCGTA 421 ATTGAAAATT CGAGGTTGAA ATGTATATGT GATATTGCTA TAAAGCACAT TTTTTTATTT 481 AATGATAAGG TTATTAATCA ACAAAGAAAA ATTAAAATTC TTAAAAGATG AGATAAATTC 541 AGAAGCACTT ATTTATTAGT TTTAAATATA GCAGACAGAA TTCCATTGGT CTAATTTGGG 601 ACCTTAGAAT AGATTTTGAC TCTATCTGAC AAACATATCA AGATAAAGAA TAGGAAAGGG 661 CCCTTAGATT TAGTTGTGAC CTCTGAGGAG CCGTATGAGG TGAAACCTGC AGCCCGGGGG 721 ATCCACTAGT CTAGAGCGGC CGCCACCGCG GGGAGTCCAG TTAAATGGAA T Predicted gene structure (within gDNA segment 87489 to 95868): Exon 1 89182 89236 ( 55 n); cDNA 433 484 ( 52 n); score: 0.618 Intron 1 89237 92991 (3755 n); Pd: 0.900 (s: 0.60), Pa: 0.000 (s: 0.92) Exon 2 92992 93058 ( 67 n); cDNA 485 550 ( 66 n); score: 0.940 Intron 2 93059 94191 (1133 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 3 94192 94216 ( 25 n); cDNA 551 574 ( 24 n); score: 0.640 MATCH C08SLm0006K11.1+ SGN-U340745- 0.795 147 0.191 C PGS_C08SLm0006K11.1+_SGN-U340745- (89182 89236,92992 93058,94192 94216) Alignment (genomic DNA sequence = upper lines): AGATTTAGAT GTTGATGGCT TATGGATGTT TTGTCCCTCT TTTTGTTACT TAATTATAAC 89241 || || | || || ||| ||| | | | | | | | |||| ||| | |||| AGGTTGAAAT GTATATGTGA TATTGCTATA AAG-CAC-AT TTTT-TTATT TAATG..... 484 CTTGGATCAT ATAGAGAGAA ATGTGGCTGA TCCTATGACT CTATGTCACC TTTTTCCTAT 89301 .......... .......... .......... .......... .......... .......... 484 CCAGAGTCAA ACCTTGCGCT TCCTGCATAG ATATCAGTGC ACGTATACTT ACAAAAGAAA 89361 .......... .......... .......... .......... .......... .......... 484 TAAAAATCAG GGCTGTTCCA TTCTTAAAAA AAAAGTTGAA AAGATCAGGG TATATATGTA 89421 .......... .......... .......... .......... .......... .......... 484 TAAAGCAGTA ATCTGGTTAA TATCTGCTGG CTTCTACAAA CTTGACACCT TAAAGAAAAG 89481 .......... .......... .......... .......... .......... .......... 484 GGAAAAAGTA ACTGTCACAA AAAAATCATT ATTTTGGAAC AATGTTCTAG TATTTTTTGT 89541 .......... .......... .......... .......... .......... .......... 484 TAAGTTAAAA GAGTGTGCAT TGGTATGAAT AATATGATTG TCTTTAGAGG CAGGCTGGTT 89601 .......... .......... .......... .......... .......... .......... 484 ACCTCTTGCA GACAACATTA TCCTCAATTC TCTTCCTTTT TTTTGGGTCA ACCCCTAATT 89661 .......... .......... .......... .......... .......... .......... 484 CTCTTTTACG TGTCACTGTT CTTGCAAGCT CAGTTTTTTT CGCTTCCTTG TCTTCTGTTA 89721 .......... .......... .......... .......... .......... .......... 484 TCGGTACATG TTCATGATGT TAGAAGCTAT AGTTTTGAAA CTAAACACCC CTTTCGAGTG 89781 .......... .......... .......... .......... .......... .......... 484 TGGTCTGGGG ATATCTCTTT CTGTCTCTAG CAACTATCTT AAAAGACCTT ACATTGATTA 89841 .......... .......... .......... .......... .......... .......... 484 ACACCGGTTA GCTTTTGGCC CTGTTTAATT TTGTGCTTCA TTGTTTGGCC TAGTCGATTT 89901 .......... .......... .......... .......... .......... .......... 484 GATTAATAGG AAATGTTTTG TCATTCAGTG GGTACATATC ACATACAGAT TTTTCTGCGG 89961 .......... .......... .......... .......... .......... .......... 484 TTTTAAGTTA GATCTGCCCT TTTCTTTTGT CTTAATCCTT CTTAGCTATC TACCATAAGC 90021 .......... .......... .......... .......... .......... .......... 484 TAGATATTGA GGCTTGTGCC TTTTGTTGTG AAAAGCTAAT TAAAGTTCTA TTTTCCTTGT 90081 .......... .......... .......... .......... .......... .......... 484 TATATACCAA AAGAACTGCA AATTCATACC AGATACTATC TAATGTTTAG TGTAGAAGCG 90141 .......... .......... .......... .......... .......... .......... 484 AACTTATGGG CCTGCCTTTT TCTATTAAAG CTGCTTGATT GACCTCTCCT TTACTTGGAT 90201 .......... .......... .......... .......... .......... .......... 484 GGCTTTTTGT ATATCATAGT CTGATGAGCA CTTTGCAGGT TGAGGGGCCA AAATCTCCTG 90261 .......... .......... .......... .......... .......... .......... 484 ATGAACTGCT TACTGCACTT CAAAGGGTGC TCGAGGAAAG TGCACCTGTG CTTGTTTCTG 90321 .......... .......... .......... .......... .......... .......... 484 CCAGGCTTGA AGCAGAAGAA AGGAGAAATA ATATTAGACT AAGAGAGGAG CAGGATGCTG 90381 .......... .......... .......... .......... .......... .......... 484 CTTATCGTGC TGCACTAGAG GCTGATCAGG TATGTAGTTT TAGGTTTTAA AATAGGCTTT 90441 .......... .......... .......... .......... .......... .......... 484 AGCAGTTCAA TTTTGAGAAA GGGTACAAAG TAATTTGTGT GCTGCTGAAC TGTTCGTCCT 90501 .......... .......... .......... .......... .......... .......... 484 ATACCAGGCT AGAGAGCGTC AGAGGCAAGA AGAGCAAGAG CGGCAGGAAA GGGAAGCTGC 90561 .......... .......... .......... .......... .......... .......... 484 TGAAGCTGAA AGGAAAAGAA AGGAGGAAGA AGAGGCTCGT GAAAGAGCAG CTCGTGAAGC 90621 .......... .......... .......... .......... .......... .......... 484 TGCTGAAAGA GAAGCTGCAT TGGCTAAAAT GCGCGAGGAG AAATTACAGT CACTGGGCCC 90681 .......... .......... .......... .......... .......... .......... 484 TGAACCTGCA AAGGGTCCCG ATGTTACTCA AGTAATCATC TTGTTCATGT CTCTTTTATT 90741 .......... .......... .......... .......... .......... .......... 484 TAAACGTGCA TCCGTCTATG TCATAATGCT AGATACAAGG TTGTTTCTAT TGGTTTTGAG 90801 .......... .......... .......... .......... .......... .......... 484 TAAGCAACGA GAAAACTTGC GAGTCAAATA CACATTAAAA ATGCAGTAGA AATTGCTACT 90861 .......... .......... .......... .......... .......... .......... 484 TTTCAGATGA TTAAATTCTT TGTTGGTTTC TTGTATCCTG CAGGTTTTGG TAAGGTTTCC 90921 .......... .......... .......... .......... .......... .......... 484 TACTGGTGAG CGCAAAGAGA GAAGATTTCA ATGTAGTACA ACTATACAAT CTCTGTATGA 90981 .......... .......... .......... .......... .......... .......... 484 CTATGTTGAT TCTCTTGGAT GCCTAGAGGT TGAAAAGTAC AGTCTCGTGT CCAACTTCCC 91041 .......... .......... .......... .......... .......... .......... 484 TCGTACAGTC TATGGCTCAG AGAAGCTCGC TCTGTCGTTG AAAGATGCTG GATTACACCC 91101 .......... .......... .......... .......... .......... .......... 484 TCAGGCCAGC CTTTTTGTTG AGTTGAACTC ATGAGAACGA TTGCTGTCTT GTGCTAGAGT 91161 .......... .......... .......... .......... .......... .......... 484 TGATAACTTT TGTTGAAAAT GGTTGTATGT GAATTAGAAC TGGGCAATGA ATTCAATTAG 91221 .......... .......... .......... .......... .......... .......... 484 ATGCAGTTTT GTGTATTGTA CCCTTGTTAA ATAATTTTCT ACTGCTTTAA CGTTAAGTTT 91281 .......... .......... .......... .......... .......... .......... 484 CTGTTAATAG ATAATTGAAT ACATATATAG TTCAATTGTA ATTGGCTGTA AATGAATGAT 91341 .......... .......... .......... .......... .......... .......... 484 CACTTGGTCT AGCAGATTAT CGTTATATTC ACATGGAACT CCAGATTGCA AATGGATTCA 91401 .......... .......... .......... .......... .......... .......... 484 GGTGCCAACT TTTGATTGCA TTTATCATGA TTTATCAGTA GTGTGTCAAT TCTATAAAAA 91461 .......... .......... .......... .......... .......... .......... 484 CTTGTCCACA CCGAAATGTT AACACCAACC AATCACATAC GTCTGGTTTA TATAAACACC 91521 .......... .......... .......... .......... .......... .......... 484 AAGAGTGGGT AAGTATAGAT TTGTCTGTCT TGGAGTGAAA ATCACCGAGA AATGTTACTC 91581 .......... .......... .......... .......... .......... .......... 484 ATATCTAACA ATTAAGAATG AGAACAAGCC ATCCAACAAA TACATGTAAG TTATTGTTGA 91641 .......... .......... .......... .......... .......... .......... 484 AAAGAATACC AATTGAAATT GATTGATTAT ATATCAAAAC AAGCGCCCGA TTTGGCAAAA 91701 .......... .......... .......... .......... .......... .......... 484 ATAACTTTGC TGCTTGATGA TGCCTGAAAG TTAACAAAAT GTAGCAATGA GATTAGTCTA 91761 .......... .......... .......... .......... .......... .......... 484 AGACGCAAGC AGGCAAAGCT TGGAGTGGAA TTGATGATGC CTGAATGTTA ACAAAATGTA 91821 .......... .......... .......... .......... .......... .......... 484 GCAATGAGAT TAGTCTAAGA CACAAGCAGG CAAAGCTTGG AGAAAGAAAA AAGTACAAAA 91881 .......... .......... .......... .......... .......... .......... 484 ATGGCTTCGC CCGGAGACCT TCAGTGTGTT AGACTGACGT GATAACCAAC TACACCACGA 91941 .......... .......... .......... .......... .......... .......... 484 AACCCTGTTA TTCAAAAGTA CCAATTTGTT TATAAACATA TAAGTTTTAG ACACTAATTA 92001 .......... .......... .......... .......... .......... .......... 484 CGTTTAACAT TGTAATACGT GGCTAATTAG ATGTTAAATC AACGGCGATT AGCAAGTTGA 92061 .......... .......... .......... .......... .......... .......... 484 TTATTTGAAG TTGACAAATT ATTAACCCTT TAACTCAAAA ACTGCCATTT TTCCAGCTGC 92121 .......... .......... .......... .......... .......... .......... 484 TTCTCTCTTC TCCATTCCCC TAAATTCTCT ATTAACAAAC TATGATTTTT TAGGGATTTT 92181 .......... .......... .......... .......... .......... .......... 484 GAGATTTGTT TGCCCTAATT AGCTATATGC GTTTCAATAC TGTGTCCGAT TGTTAATCAG 92241 .......... .......... .......... .......... .......... .......... 484 TTGAATTCTT CAAATGGGGG TTCTCAATTT TTCCGGTTTA ATTTTGCTGA AAGCTGAGCT 92301 .......... .......... .......... .......... .......... .......... 484 TTTTCAATTC CAATTCCGAT TTGGAAGAGT TATTGATTCC TATTCTGTCG CCTGTGAAGC 92361 .......... .......... .......... .......... .......... .......... 484 ATTTTCTGAA CCTTTTCTTT GATTTCATTA ATTTTCTTCT TCTCTAGGTT TACTTCTTTT 92421 .......... .......... .......... .......... .......... .......... 484 TTTGTGTTAT TTTTTTTTGT TTCTGGGTGT GGAGAGATGA ATTCTGCCTG TTCTTGGTTT 92481 .......... .......... .......... .......... .......... .......... 484 GAAAAAGTGA AATTAGATGA ACCTGAAATT GTTGAAGTGT CACCAGACGA GAGATATATT 92541 .......... .......... .......... .......... .......... .......... 484 CGGGTAATTT CTGTGTTTTT TTTCTCTTCT CTATGTATAC TTGCCAAGTT TCTATTTTTA 92601 .......... .......... .......... .......... .......... .......... 484 GGATTATCTG ATAACACAAC TGTAGGTCCC GCTTGTTGTA CTATTGTTCA TTTCATTTTA 92661 .......... .......... .......... .......... .......... .......... 484 TAAGTTAATG CTAGAAAATT GTGGTAGTTG TATCATTTGA TTTGAAAGTG AGTCTTGTTA 92721 .......... .......... .......... .......... .......... .......... 484 AAAAGGGCTT ATCCCATACA AAGGGTGAGC GCATTGCATT CAAGGGAGTG GTGTAGTCGT 92781 .......... .......... .......... .......... .......... .......... 484 CAATGAAGTG GTTGAGAGTC ATGAGATTTC AGGAGTTCCC TGTGGGGCTA TTACACGTAT 92841 .......... .......... .......... .......... .......... .......... 484 TCCCCCTGGG GTAGCTACAA GCATAAACCA GTTTAATAAA TAACGTAGAG TGATCACATG 92901 .......... .......... .......... .......... .......... .......... 484 AATTATTTGC AAGCTTGCTT GCGCACACGT GAGGAAGTTG AATCTCTCTA AGAATGGAGA 92961 .......... .......... .......... .......... .......... .......... 484 ACCCCATATG TGATATTGCT ATAAAGCACT GTAAGGTTTA TTAATCAACA AAGCAAAAAT 93021 ||||| ||| |||||||||| ||| |||| | .......... .......... .......... ATAAGG-TTA TTAATCAACA AAGAAAAATT 513 AAAATTCTTA AAAGATGAGA TAAATTCAGA AGCACTTGTT AGATAAAATA ACTAGGTGAT 93081 |||||||||| |||||||||| |||||||||| ||||||| AAAATTCTTA AAAGATGAGA TAAATTCAGA AGCACTT... .......... .......... 550 TCTTCCATTT GTCTAAGCCT TGGTGGACAG TCACGAATGG TCATTAAAAA AAACACGAAG 93141 .......... .......... .......... .......... .......... .......... 550 GGTGAGTGTA TTGCTATTGT TATTCCTTAT GCTTGCCTTT CTGCAAAGGG TTCTTCAAGC 93201 .......... .......... .......... .......... .......... .......... 550 ACCTATGAAG AGAGTTGAGA GGTTCATGAA GTGTTTACTT TAGGTCAGAA AAAGCTTCAA 93261 .......... .......... .......... .......... .......... .......... 550 AATCTTTATA AAAGGAAGAA AGATCGTCAA CGATGTTATA AACTCAAAAT TTAATTTTGA 93321 .......... .......... .......... .......... .......... .......... 550 GACATGATTG TGATTGGTTA TCATATGATA TTAATTTTGT TTCTGTTTCA TTTGTGTAAT 93381 .......... .......... .......... .......... .......... .......... 550 TTTGTGGGTT TTGGTGGTAT TGTCACCTTC TTTTTGTTTC TCTTCCTCCA GTATAGTGAA 93441 .......... .......... .......... .......... .......... .......... 550 ATCTTGGGAA GTGGAGCATT TAAGACTGTG TATGGCTCCG ACACCCATCT CCTTTTATTT 93501 .......... .......... .......... .......... .......... .......... 550 TTTGCGTTTG AAGTCTTACC TCATCATCAT TATTCATTTT CAAGTTTTTA GCGATTTTCA 93561 .......... .......... .......... .......... .......... .......... 550 AATCTTTTCA TATGTAGCTA TAAGGCATTT GACAATATTG ATGGAATAGA AGTTGCCTGG 93621 .......... .......... .......... .......... .......... .......... 550 AATCAAATTT GCATAGATGA TGCTTTGCAG TCGCCTGAAC ATTTGGAGAG AACATATTCC 93681 .......... .......... .......... .......... .......... .......... 550 GAGGTTCACT TGTTGAAAAT GTTGAAGAAT GAGAACGTTA TAAAATTATA TACTTCATGG 93741 .......... .......... .......... .......... .......... .......... 550 GTGGACGATG TGAACAAAAG TATTAATATG ATCACCGAAT TATTTAGTTC AGGAAGCTTA 93801 .......... .......... .......... .......... .......... .......... 550 AGGCAGTGAG TACTATATTT CTTTCATATT TGCCCTTCTT ATTTATCTTT CATGCAACCT 93861 .......... .......... .......... .......... .......... .......... 550 CCAGATCTTC TTTTTCTTAC ATCTTTTGCA TTCTCTCCCT CTTAGCTATC GGACAAAGCA 93921 .......... .......... .......... .......... .......... .......... 550 TAAGACGGTT GACACTAAAG CCATTAAACA TTGGGCTAGA CAAATTCTCC AAGGTTTACA 93981 .......... .......... .......... .......... .......... .......... 550 TTATCTCCAT AGTCACAATC CACCGGTTAT ACATAGAGAC TTGAAATGTG ACAATATATT 94041 .......... .......... .......... .......... .......... .......... 550 CATCAATGGA AACCATGGAG AAGTTAAACT TGGAGATCTT GGATTGGCGA CAATTATGGA 94101 .......... .......... .......... .......... .......... .......... 550 GCAACCTACT GTTCGAAGTG TTATTGGTAG TTATTTGACT TAGACTTACT GTTTTGTCTC 94161 .......... .......... .......... .......... .......... .......... 550 CATCAAAACT AATTGTTAAC CCCTCTTGCC ATTCTTTGTG TTTTCTCTTT ATCAG 94216 ||| | | | |||| | | | ||| .......... .......... .......... ATT-TATTAG TTTTAAATAT AGCAG 574 hqPGS_C08SLm0006K11.1+_SGN-U340745- (92992 93058) ******************************************************************************** EST sequence 3 +strand 1740 n (File: SGN-U322994+) 1 ATCGGCCGAA TTGAATAGAA GTTGCCCGGA ATCAAATTTG CATAGATGAT GCTTTGCAGT 61 CGCCTGAACA TTTGGAGAGA ACATATTCCG AGGTTCACTT GTTGAAAATG TTGAAGAATG 121 AGAACGTTAT AAAATTATAT ACTTCATGGG TGGACGATGT GAACAAAAGT ATTAATATGA 181 TCACCGAATT ATTTAGTTCA GGAAGCTTAA GGCACTATCG GACAAAGCAT AAGACGGTTG 241 ACACTAAAGC CATTAAACAT TGGGCTAGAC AAATTCTCCA AGGTTTACAT TATCTCCATA 301 GTCACAATCC ACCGGTTATA CATAGAGACT TGAAATGTGA CAATATATTC ATCAATGGAA 361 ACCATGGAGA AGTTAAACTT GGAGATCTTG GATTGGCGAC AATTATGGAG CAACCTACTG 421 TTCGAAGTGT TATTGGTACC CCTGAATTTA TGGCGCCTGA GCTATATGAT GAAGAATATA 481 ATGAACTTGT TGACATTTAT TCTTTTGGCA TGTGCATCTT GGAGCTAATA ACATGTGAAT 541 ATCCATATAA TGAGTGTAGA AATCAAGCAC AAATTTATAA GAAAGTCACG TCGGGAATAA 601 AGCCAGCGTC TTTAGCAAAA GTAGCAGATC CTCATGTAAA ACAATTTGTC GAGAAATGTT 661 TGGCCCCAGT ATCAGTAAGA TTGAGTGCAG CTGAACTTTT GGAAGACCCG TTTCTTTCAT 721 CTGAGAGCTT GAAAACCCCC GCATGTGATC ATTTGCAGCC CACAAATTTT GTGCCTGAAG 781 CACAAAGCTT GCCAAAGTCG ATTTTCATGG ATGTAGACCT TGCACAAAAG ATGCACAGTG 841 GCATGTCCAT AGAAAGCAAG ACTGCATCTC CTCATTTTTC TAATCTAGAA ATCGTGAGAC 901 GAAATGGGAG AAACGAATTT AGGTTACAAG GTGACAAGCA TGATGATCGT TCAATTGTGT 961 TTTCACTGCG AATAGCTGAA TTGGCTGGTC GGATCAGGCA TGTGCACTTT GTATATTGTA 1021 TTGATGCTGA CACTGTGATG TCAATAGCTA GTGAGATGGC AGAGGAGCTT GAGTTGTTGA 1081 ATGACGATGT GGCAACAATA GCTGAATTGA TTACCGACTT CATTTTCAAA CTCTCAACAA 1141 TCCAGAAATA TTCTTTTGGG AGTTCGTCTG CAGTGAATAA CTTATCCGAT GATTCAACTT 1201 TGATAATAGA AGATCCTATT GTCTGTGAAG GCATTACATC TTTGAATCAA GGGATAGCAT 1261 CAACCTCAAA TGTGGAGTAT AACAACATTT TAAGGTCTCT TGGCAATGAG TCAGATAACA 1321 TCAATGTCCA CACTCAAAGC AACAGTAAGG GGAGTCTAGG TGATGCTGTA ATGAGTGATT 1381 GTACCACCAA AACTTCAGGG ATCTCCTCTG ATAGCTTGCT GAATGTCATA TCTAATGATT 1441 TCAGTTCTAA CTCTCTTATC AACGGGGCAA ATGACAAAAA TCAATTGCAC GATCTGAAGT 1501 CGGAACTTGA TGCCATTGAT ATGCAGTATC AACAATCTTG TCGTGAACTC TTGAGAATGA 1561 GAGAGGAGGC AATTGAAAAT GCTAGAAAGA AGTGGACTGG TAAAAATAAA ATATGTACTT 1621 AGCTTGTTCA AATTTTATTT TAGAGCTACT GTTTGGTACG TATTTTGGTT TTACTTCATT 1681 CTTTATCAAA CTACCGGACA GTGTCAATGA AGTGAATTGT TGTATAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 92750 to 96463): Exon 1 93602 93806 ( 205 n); cDNA 10 214 ( 205 n); score: 0.990 Intron 1 93807 93906 ( 100 n); Pd: 0.783 (s: 1.00), Pa: 0.789 (s: 1.00) Exon 2 93907 94127 ( 221 n); cDNA 215 435 ( 221 n); score: 1.000 Intron 2 94128 94216 ( 89 n); Pd: 0.929 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 94217 94374 ( 158 n); cDNA 436 593 ( 158 n); score: 1.000 Intron 3 94375 94459 ( 85 n); Pd: 0.077 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 94460 94853 ( 394 n); cDNA 594 987 ( 394 n); score: 1.000 Intron 4 94854 94930 ( 77 n); Pd: 0.919 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 94931 95663 ( 733 n); cDNA 988 1721 ( 734 n); score: 0.986 PPA cDNA 1724 1740 MATCH C08SLm0006K11.1+ SGN-U322994+ 0.993 1711 0.983 C PGS_C08SLm0006K11.1+_SGN-U322994+ (93602 93806,93907 94127,94217 94374,94460 94853,94931 95663) Alignment (genomic DNA sequence = upper lines): ATGGAATAGA AGTTGCCTGG AATCAAATTT GCATAGATGA TGCTTTGCAG TCGCCTGAAC 93661 || ||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATTGAATAGA AGTTGCCCGG AATCAAATTT GCATAGATGA TGCTTTGCAG TCGCCTGAAC 69 ATTTGGAGAG AACATATTCC GAGGTTCACT TGTTGAAAAT GTTGAAGAAT GAGAACGTTA 93721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGAGAG AACATATTCC GAGGTTCACT TGTTGAAAAT GTTGAAGAAT GAGAACGTTA 129 TAAAATTATA TACTTCATGG GTGGACGATG TGAACAAAAG TATTAATATG ATCACCGAAT 93781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATTATA TACTTCATGG GTGGACGATG TGAACAAAAG TATTAATATG ATCACCGAAT 189 TATTTAGTTC AGGAAGCTTA AGGCAGTGAG TACTATATTT CTTTCATATT TGCCCTTCTT 93841 |||||||||| |||||||||| ||||| TATTTAGTTC AGGAAGCTTA AGGCA..... .......... .......... .......... 214 ATTTATCTTT CATGCAACCT CCAGATCTTC TTTTTCTTAC ATCTTTTGCA TTCTCTCCCT 93901 .......... .......... .......... .......... .......... .......... 214 CTTAGCTATC GGACAAAGCA TAAGACGGTT GACACTAAAG CCATTAAACA TTGGGCTAGA 93961 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....CTATC GGACAAAGCA TAAGACGGTT GACACTAAAG CCATTAAACA TTGGGCTAGA 269 CAAATTCTCC AAGGTTTACA TTATCTCCAT AGTCACAATC CACCGGTTAT ACATAGAGAC 94021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTCTCC AAGGTTTACA TTATCTCCAT AGTCACAATC CACCGGTTAT ACATAGAGAC 329 TTGAAATGTG ACAATATATT CATCAATGGA AACCATGGAG AAGTTAAACT TGGAGATCTT 94081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAATGTG ACAATATATT CATCAATGGA AACCATGGAG AAGTTAAACT TGGAGATCTT 389 GGATTGGCGA CAATTATGGA GCAACCTACT GTTCGAAGTG TTATTGGTAG TTATTTGACT 94141 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATTGGCGA CAATTATGGA GCAACCTACT GTTCGAAGTG TTATTG.... .......... 435 TAGACTTACT GTTTTGTCTC CATCAAAACT AATTGTTAAC CCCTCTTGCC ATTCTTTGTG 94201 .......... .......... .......... .......... .......... .......... 435 TTTTCTCTTT ATCAGGTACC CCTGAATTTA TGGCGCCTGA GCTATATGAT GAAGAATATA 94261 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTACC CCTGAATTTA TGGCGCCTGA GCTATATGAT GAAGAATATA 480 ATGAACTTGT TGACATTTAT TCTTTTGGCA TGTGCATCTT GGAGCTAATA ACATGTGAAT 94321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAACTTGT TGACATTTAT TCTTTTGGCA TGTGCATCTT GGAGCTAATA ACATGTGAAT 540 ATCCATATAA TGAGTGTAGA AATCAAGCAC AAATTTATAA GAAAGTCACG TCGGTGAGTT 94381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ATCCATATAA TGAGTGTAGA AATCAAGCAC AAATTTATAA GAAAGTCACG TCG....... 593 TTAGTTGTTT TGGGCTTTTA CTGTTACTTT ATTCTACTTG AAAATAATTG CAATGCTAAG 94441 .......... .......... .......... .......... .......... .......... 593 GAAAATATTT GATTTCAGGG AATAAAGCCA GCGTCTTTAG CAAAAGTAGC AGATCCTCAT 94501 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GG AATAAAGCCA GCGTCTTTAG CAAAAGTAGC AGATCCTCAT 635 GTAAAACAAT TTGTCGAGAA ATGTTTGGCC CCAGTATCAG TAAGATTGAG TGCAGCTGAA 94561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAAACAAT TTGTCGAGAA ATGTTTGGCC CCAGTATCAG TAAGATTGAG TGCAGCTGAA 695 CTTTTGGAAG ACCCGTTTCT TTCATCTGAG AGCTTGAAAA CCCCCGCATG TGATCATTTG 94621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTGGAAG ACCCGTTTCT TTCATCTGAG AGCTTGAAAA CCCCCGCATG TGATCATTTG 755 CAGCCCACAA ATTTTGTGCC TGAAGCACAA AGCTTGCCAA AGTCGATTTT CATGGATGTA 94681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCCCACAA ATTTTGTGCC TGAAGCACAA AGCTTGCCAA AGTCGATTTT CATGGATGTA 815 GACCTTGCAC AAAAGATGCA CAGTGGCATG TCCATAGAAA GCAAGACTGC ATCTCCTCAT 94741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCTTGCAC AAAAGATGCA CAGTGGCATG TCCATAGAAA GCAAGACTGC ATCTCCTCAT 875 TTTTCTAATC TAGAAATCGT GAGACGAAAT GGGAGAAACG AATTTAGGTT ACAAGGTGAC 94801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTAATC TAGAAATCGT GAGACGAAAT GGGAGAAACG AATTTAGGTT ACAAGGTGAC 935 AAGCATGATG ATCGTTCAAT TGTGTTTTCA CTGCGAATAG CTGAATTGGC TGGTATTTGA 94861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AAGCATGATG ATCGTTCAAT TGTGTTTTCA CTGCGAATAG CTGAATTGGC TG........ 987 TCATTCTTAC AGAATAATAC ATGGAGTATT TGCAAGCAAA TGTTTGACTC TTTTCTCTAT 94921 .......... .......... .......... .......... .......... .......... 987 TTTTAACAGG TCGGATCAGG CATGTGCACT TTGTATATTG TATTGATGCT GACACTGTGA 94981 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TCGGATCAGG CATGTGCACT TTGTATATTG TATTGATGCT GACACTGTGA 1038 TGTCAATAGC TAGTGAGATG GCAGAGGAGC TTGAGTTGTT GAATGACGAT GTGGCAACAA 95041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAATAGC TAGTGAGATG GCAGAGGAGC TTGAGTTGTT GAATGACGAT GTGGCAACAA 1098 TAGCTGAATT GATTACCGAC TTCATTTTCA AACTCTCAAC AATCCAGAAA TATTCTTTTG 95101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGAATT GATTACCGAC TTCATTTTCA AACTCTCAAC AATCCAGAAA TATTCTTTTG 1158 GGAGTTTGTC TGCAGTGAAT AACTTATCCG ATGATTCAAC TTTGATAATC GAAGATCCTA 95161 |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GGAGTTCGTC TGCAGTGAAT AACTTATCCG ATGATTCAAC TTTGATAATA GAAGATCCTA 1218 TTGTCTGTGA AGGCATTACA TCTTTGAATC AAGGGATAGC ATCAACCTCA GATGTGGAGT 95221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTGTCTGTGA AGGCATTACA TCTTTGAATC AAGGGATAGC ATCAACCTCA AATGTGGAGT 1278 ATAACAACGT TTTAAGGTCT CTTGGCAATG AGTCAGATAA CATCAATGTC CACACTCAAA 95281 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACAACAT TTTAAGGTCT CTTGGCAATG AGTCAGATAA CATCAATGTC CACACTCAAA 1338 GCAACAGTAA GGGGAGTCTA GGTGATGCTG TAATGAGTGA TTGTACCACC AAAACTTCAG 95341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAGTAA GGGGAGTCTA GGTGATGCTG TAATGAGTGA TTGTACCACC AAAACTTCAG 1398 GGATCTCCTC TGATAGCTTG CTGAATGTCA TATCTAATGA TTTCAGTTCT AACTCTCTTA 95401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTCCTC TGATAGCTTG CTGAATGTCA TATCTAATGA TTTCAGTTCT AACTCTCTTA 1458 TCAACGGGGC AAATGACAAA AATCAATTGC ACGATCTGAA GTCGGAACTT GATGCCATTG 95461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACGGGGC AAATGACAAA AATCAATTGC ACGATCTGAA GTCGGAACTT GATGCCATTG 1518 ATATGCAGTA TCAACAATCT TGTCGTGAAC TCTTGAGAAT GAGAGAGGAG GCAATTGAAA 95521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCAGTA TCAACAATCT TGTCGTGAAC TCTTGAGAAT GAGAGAGGAG GCAATTGAAA 1578 ATGCTAGAAA GAAGTGGACT GGTAAAAATA AAATATGTAC TTAGCTTGTT C-AATTTTGT 95580 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||| | ATGCTAGAAA GAAGTGGACT GGTAAAAATA AAATATGTAC TTAGCTTGTT CAAATTTTAT 1638 TTTAGAGCTA CTGTTTGGTA CGTATTTTGG TTTTACTTCA TTCTTTATCA AACCACCTAA 95640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| | TTTAGAGCTA CTGTTTGGTA CGTATTTTGG TTTTACTTCA TTCTTTATCA AACTACCGGA 1698 CAGTGTCAAT GAAGTGAATT GTT 95663 |||||||||| |||||||||| ||| CAGTGTCAAT GAAGTGAATT GTT 1721 hqPGS_C08SLm0006K11.1+_SGN-U322994+ (93602 93806,93907 94127,94217 94374,94460 94853,94931 95663) ******************************************************************************** EST sequence 1 +strand 1324 n (File: SGN-U322380+) 1 TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 61 AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 121 TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 181 CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 241 AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 301 TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 361 ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 421 AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGATCCTTC 481 ATTACCTGTT TTAACTTTTC GAATGTGGTT TTTAGGGACA GTTTCTTGTG TTTTGTTATC 541 ATTTCTGAAC CAATTCTTTT GGTACAGAAC AGAGCCATTG ACAATTACAG CAATTTCAGC 601 TCAAATAGCT GTGGTTCCTT TGGGTCAACT TATGGCTGCA AAGATAACAA AAAGGGTATT 661 TTTGCAAGGA TCTAAATGGG AATTCAGTTT AAATCCAGGC CCTTTTAATG TTAAAGAACA 721 TGTCCTCATC ACCATTTTTG CAAATTCTGG TGCTGGAACT GTTTATGCTA TTCATGTTGT 781 CACTGCTGTT AAAGTCTTTT ATAAGAAAGA CATTACCTTC TTTGTTTCTC TTATTGTTAT 841 CATCACAACA CAGGTGTTGG GATTTGGATG GGCTGGAATT TTCAGAAAGT ACTTGGTTGA 901 GCCAGCAGCC ATGTGGTGGC CTTCCAATCT TGTCCAAGTC TCATTATTCA GGGCTTTACA 961 CGAGAAAGAA GAACGTTGTA AAGGAGGGCT AACGCGTACT CAGTTCTTTA TAGTAGCCTT 1021 TATCTGCAGT TTTGCATACT ACATTTTCCC TGGATATCTC TTTTCAATGT TGACATCTTT 1081 GTCATGGATA TGTTGGATCT TTCCCAAATC TGTGTTTGCC CAACAACTAG GTTCGGGCCT 1141 AAAGGGGCTT GGAATTGGAG CTATAGGCCT TGATTGGTCC TCTATTTCGT CCTACCTTGG 1201 AAGCCCATTA GCTAGCCCAT GGTTTGCTAC AGCTAATGTT GCTGCTGGAT TCATATTTGT 1261 TATGTATGTT TTGACCCCAA ATGTTACTGG TTAGATATCT TCAAAGCCAA AACATTCCCA 1321 ATTT Predicted gene structure (within gDNA segment 96474 to 99668): Exon 1 97074 97926 ( 853 n); cDNA 1 853 ( 853 n); score: 1.000 Intron 1 97927 98004 ( 78 n); Pd: 0.996 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 2 98005 98102 ( 98 n); cDNA 854 951 ( 98 n); score: 1.000 Intron 2 98103 98684 ( 582 n); Pd: 1.000 (s: 1.00), Pa: 0.907 (s: 1.00) Exon 3 98685 99058 ( 374 n); cDNA 952 1324 ( 373 n); score: 0.995 MATCH C08SLm0006K11.1+ SGN-U322380+ 0.998 1325 1.001 C PGS_C08SLm0006K11.1+_SGN-U322380+ (97074 97926,98005 98102,98685 99058) Alignment (genomic DNA sequence = upper lines): TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 97133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTCTCT CTCTGTACTA TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA 60 AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 97193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGATTC TCCAAAATTT GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA 120 TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 97253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTGTCA CATACAAAAA AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT 180 CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 97313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAATCAA GACTCCTCTG TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA 240 AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 97373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGTCGAT ATTAGATCCT AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA 300 TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 97433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGGATC CGAAAGGTGT ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT 360 ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 97493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAATTTT GATCATGGCA TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA 420 AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGATCCTTC 97553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGAAAAT TCTCCTGTCG AACAAGTTGC TCTTACTGTT CCAACAACTG ATGATCCTTC 480 ATTACCTGTT TTAACTTTTC GAATGTGGTT TTTAGGGACA GTTTCTTGTG TTTTGTTATC 97613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACCTGTT TTAACTTTTC GAATGTGGTT TTTAGGGACA GTTTCTTGTG TTTTGTTATC 540 ATTTCTGAAC CAATTCTTTT GGTACAGAAC AGAGCCATTG ACAATTACAG CAATTTCAGC 97673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTGAAC CAATTCTTTT GGTACAGAAC AGAGCCATTG ACAATTACAG CAATTTCAGC 600 TCAAATAGCT GTGGTTCCTT TGGGTCAACT TATGGCTGCA AAGATAACAA AAAGGGTATT 97733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAATAGCT GTGGTTCCTT TGGGTCAACT TATGGCTGCA AAGATAACAA AAAGGGTATT 660 TTTGCAAGGA TCTAAATGGG AATTCAGTTT AAATCCAGGC CCTTTTAATG TTAAAGAACA 97793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCAAGGA TCTAAATGGG AATTCAGTTT AAATCCAGGC CCTTTTAATG TTAAAGAACA 720 TGTCCTCATC ACCATTTTTG CAAATTCTGG TGCTGGAACT GTTTATGCTA TTCATGTTGT 97853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCATC ACCATTTTTG CAAATTCTGG TGCTGGAACT GTTTATGCTA TTCATGTTGT 780 CACTGCTGTT AAAGTCTTTT ATAAGAAAGA CATTACCTTC TTTGTTTCTC TTATTGTTAT 97913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGCTGTT AAAGTCTTTT ATAAGAAAGA CATTACCTTC TTTGTTTCTC TTATTGTTAT 840 CATCACAACA CAGGTAATTA ATCGTAACGA CTAACTGACG ACGATGACGT ATATAACTTA 97973 |||||||||| ||| CATCACAACA CAG....... .......... .......... .......... .......... 853 AACTTTGTTA ATAAGATATT TTAAATGGTA GGTGTTGGGA TTTGGATGGG CTGGAATTTT 98033 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTTGGGA TTTGGATGGG CTGGAATTTT 882 CAGAAAGTAC TTGGTTGAGC CAGCAGCCAT GTGGTGGCCT TCCAATCTTG TCCAAGTCTC 98093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAAGTAC TTGGTTGAGC CAGCAGCCAT GTGGTGGCCT TCCAATCTTG TCCAAGTCTC 942 ATTATTCAGG TAAGTTTTGT AAAATAATTT TCAAACCTCT TTGTCGAAAA GTTCAAGGAG 98153 ||||||||| ATTATTCAG. .......... .......... .......... .......... .......... 951 AAAAAAATAA TTTTTATACA AGATAAATTT CTGCTAAATA GTTTCAAGAG TATTTAGACG 98213 .......... .......... .......... .......... .......... .......... 951 GATCACTATT ATTATTTTTG GTAGGTTGCG GCTGATAAAT ACGACAGCGA TCCCACAGGT 98273 .......... .......... .......... .......... .......... .......... 951 TGCTTTTGTT TTTGAAAATA ATATCTTTGG GAATTAGGTG AAAAATCAAT AATTTTAGAA 98333 .......... .......... .......... .......... .......... .......... 951 GATATTTTAT ATGGAAATTT CATTATGTTA GGTAATTAGA TATATATCAA TTTTGTTTTT 98393 .......... .......... .......... .......... .......... .......... 951 CTTGAAAACA GAGTAATAGT AATGGAGGAT CCTTTCACCT AAAAAAGATT CATGTTTTTA 98453 .......... .......... .......... .......... .......... .......... 951 TTCTATAGTA ATGTAATAAT TCCTCTCAAG ATTAAACTTT TATCCACTTT TCGTATAATT 98513 .......... .......... .......... .......... .......... .......... 951 GCCACAAATT AGTGAACTGA ATTGTAGATT CAAACTCGTA ACACTGTGAT TCAAGTTATA 98573 .......... .......... .......... .......... .......... .......... 951 ACCATAGGAT GTCCCATAGG GGACTACTCT GCTTCACAGG AATTGATTGC CAAATTCACA 98633 .......... .......... .......... .......... .......... .......... 951 TACATCTGTC AGCGCTTGTT AGTTTTAACA TAGAGCTTCC TTCATTTGCA GGGCTTTACA 98693 ||||||||| .......... .......... .......... .......... .......... .GGCTTTACA 960 CGAGAAAGAA GAACGTTGTA AAGGAGGGCT AACGCGTACT CAGTTCTTTA TAGTAGCCTT 98753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAAAGAA GAACGTTGTA AAGGAGGGCT AACGCGTACT CAGTTCTTTA TAGTAGCCTT 1020 TATCTGCAGT TTTGCATACT ACATTTTCCC TGGATATCTC TTTTCAATGT TGACATCTTT 98813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTGCAGT TTTGCATACT ACATTTTCCC TGGATATCTC TTTTCAATGT TGACATCTTT 1080 GTCATGGATA TGTTGGATCT TTCCCAAATC TGTGTTTGCC CAACAACTAG GTTCGGGCCT 98873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATGGATA TGTTGGATCT TTCCCAAATC TGTGTTTGCC CAACAACTAG GTTCGGGCCT 1140 AAAGGGGCTT GGAATTGGAG CTATAGGCCT TGATTGGTCC TCTATTTCGT CCTACCTTGG 98933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGGGCTT GGAATTGGAG CTATAGGCCT TGATTGGTCC TCTATTTCGT CCTACCTTGG 1200 AAGCCCATTA GCTAGCCCAT GGTTTGCTAC AGCTAATGTT GCTGCTGGAT TCATATTTGT 98993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCCATTA GCTAGCCCAT GGTTTGCTAC AGCTAATGTT GCTGCTGGAT TCATATTTGT 1260 TATGTATGTT TTGACTCCAA TATGTTACTG GTTAGATATC TTCAAAGCCA AAACATTCCC 99053 |||||||||| ||||| |||| ||||||||| |||||||||| |||||||||| |||||||||| TATGTATGTT TTGACCCCAA -ATGTTACTG GTTAGATATC TTCAAAGCCA AAACATTCCC 1319 AATTT 99058 ||||| AATTT 1324 hqPGS_C08SLm0006K11.1+_SGN-U322380+ (97074 97926,98005 98102,98685 99058) ******************************************************************************** EST sequence 16 +strand 866 n (File: SGN-U337591+) 1 TTTTATACCC CTGAGGNACC TCAAGGGGCA ATTGGCTTTA TATACCTAAT GGACCCCCCG 61 GGCTGCAGGA ATTCGGCACG AGGTTCAAGC ATTCACCTAA TCCAATGATT CAGAAGCAAA 121 AAAAAAAAGA TTCTTCAAAA TTTGAATGCA AATATATAGG TAAGAGGTAA TAATTCATAC 181 ATATCATTTG TGACATACAA AAAAGAAAAA AGATAAAAAT TCAACCAATG GAAGAATCTG 241 CATCAGAAAT CAAGACTCCT CTGTTATCCA ATTTTGATCA TGGCATTGCA TCAAGCTCTA 301 ATGTTAAAGT CCACAAGGAT GATGAAGATG AAAATTCTCC TGTCGAACAA GTTGCTTTTA 361 CTGTTCCAAC AACTGATGAT CCTTCATTAC CTGTTTTAAC TTTTCAAATG TGGTTTTTAG 421 GGACAGGTTC TTGTGTTTTG GTATCATTTC TGAACCAATT TTTTTGGTTC AAAACAGATC 481 CATTGACAAT TACAGCATTT TTAGCTCAAA TTGCTTGTGG TTCCTTTTGG TCAACTTATG 541 GCTGCAAAGA TAACAAAATA GGTTTTTTTG CAAGGATCTA AATGGGAATT TATTTTTAAT 601 TCCAAGCCCT TTTAATGTTA AATAAAATGG TCTCATCACC ATTTTTTGAA ATACTGGTGC 661 CTGGAACTGT TTATGCTATT CATTGTGTCA CTGCTGTTAA AGCCTTTTAT AAGAAAGAAC 721 AATCCCCTCT TTGTATGTCT TATTGTTGTC ATTCCAACCA CAAGGTTGGG GATTATGTTT 781 GGCTGTATAT TTCTAAAAAG TCGTGTTGAG CACAATACCC AGTGGTGCGC TTTCAATTTA 841 TGTAGAATTC TTATATTAAG GGGTTT Predicted gene structure (within gDNA segment 95664 to 100117): Exon 1 97094 97274 ( 181 n); cDNA 84 264 ( 181 n); score: 0.967 Intron 1 97275 97432 ( 158 n); Pd: 0.996 (s: 1.00), Pa: 0.716 (s: 1.00) Exon 2 97433 97926 ( 494 n); cDNA 265 763 ( 499 n); score: 0.898 Intron 2 97927 98004 ( 78 n); Pd: 0.996 (s: 0.71), Pa: 0.970 (s: 0.60) Exon 3 98005 98102 ( 98 n); cDNA 764 860 ( 97 n); score: 0.633 Intron 3 98103 98684 ( 582 n); Pd: 1.000 (s: 0.66), Pa: 0.907 (s: 0) Exon 4 98685 98690 ( 6 n); cDNA 861 866 ( 6 n); score: 0.833 MATCH C08SLm0006K11.1+ SGN-U337591+ 0.880 779 0.900 C PGS_C08SLm0006K11.1+_SGN-U337591+ (97094 97274,97433 97926,98005 98102,98685 98690) Alignment (genomic DNA sequence = upper lines): TTCAAGCATT CACCTAATCC AATAATACAG AAACAAAAAA AAAAAGATTC TCCAAAATTT 97153 |||||||||| |||||||||| ||| || ||| || ||||||| |||||||||| | |||||||| TTCAAGCATT CACCTAATCC AATGATTCAG AAGCAAAAAA AAAAAGATTC TTCAAAATTT 143 GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA TCATTTGTCA CATACAAAAA 97213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GAATGCAAAT ATATAGGTAA GAGGTAATAA TTCATACATA TCATTTGTGA CATACAAAAA 203 AGAAAAAAGA AAAAAATTCA ACCAATGGAA GAATCTGCAT CAGAAATCAA GACTCCTCTG 97273 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAAAGA TAAAAATTCA ACCAATGGAA GAATCTGCAT CAGAAATCAA GACTCCTCTG 263 TGTAAGACTC TTTTTTCTCC AACACAATTT AATTCTTTAA AAATGTCGAT ATTAGATCCT 97333 | T......... .......... .......... .......... .......... .......... 264 AAAAAAACGA ATCAGTTCTC ACACGTTGTA ACAACATTTA TGAAAGGATC CGAAAGGTGT 97393 .......... .......... .......... .......... .......... .......... 264 ATTTCAGATC CAAAACTGAA ATCTCTCTCT GTTTTGTAGT ATCCAATTTT GATCATGGCA 97453 | |||||||||| |||||||||| .......... .......... .......... .........T ATCCAATTTT GATCATGGCA 285 TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA AGATGAAAAT TCTCCTGTCG 97513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCATCAAG CTCTAATGTT AAAGTCCACA AGGATGATGA AGATGAAAAT TCTCCTGTCG 345 AACAAGTTGC TCTTACTGTT CCAACAACTG ATGATCCTTC ATTACCTGTT TTAACTTTTC 97573 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAGTTGC TTTTACTGTT CCAACAACTG ATGATCCTTC ATTACCTGTT TTAACTTTTC 405 GAATGTGGTT TTTAGGGACA GTTTCTTGTG TTTTGTTATC ATTTCTGAAC CAATTCTTTT 97633 ||||||||| |||||||||| | |||||||| ||||| |||| |||||||||| ||||| |||| AAATGTGGTT TTTAGGGACA GGTTCTTGTG TTTTGGTATC ATTTCTGAAC CAATTTTTTT 465 GGTACAGAAC AGAGCCATTG ACAATTACAG CAATTTCAGC TCAAATAGC- TGTGGTTCCT 97692 ||| || ||| ||| |||||| |||||||||| || ||| ||| |||||| || |||||||||| GGTTCAAAAC AGATCCATTG ACAATTACAG CATTTTTAGC TCAAATTGCT TGTGGTTCCT 525 TTGGGTCAAC TTATGGCTGC AAAGATAACA AAAAGGGTAT TTTTGCAAGG ATCTAAATGG 97752 || ||||||| |||||||||| |||||||||| ||| ||| | |||||||||| |||||||||| TTTGGTCAAC TTATGGCTGC AAAGATAACA AAATAGGTTT TTTTGCAAGG ATCTAAATGG 585 GAATTCA-GT TTAAATCCAG GCCCTTTTAA TGTTAAAGAA CATGTCCTCA TCACCATTTT 97811 ||||| | | |||| |||| |||||||||| ||||||| || ||| |||| |||||||||| GAATTTATTT TTAATTCCAA GCCCTTTTAA TGTTAAATAA AATGGTCTCA TCACCATTTT 645 TGCAAATTCT GGTG-CTGGA ACTGTTTATG CTATTCATGT TGTCACTGCT GTTAAAGTCT 97870 | |||| || |||| ||||| |||||||||| |||||||| |||||||||| ||||||| || TTGAAATACT GGTGCCTGGA ACTGTTTATG CTATTCATTG TGTCACTGCT GTTAAAGCCT 705 TTTATAAGAA AG-ACATTAC CTTCTTTGTT TCTCTTATTG TTATCATCAC AA-CACAGGT 97928 |||||||||| || ||| | | | ||||||| | |||||||| || |||| | || |||| TTTATAAGAA AGAACAATCC CCTCTTTGTA TGTCTTATTG TTGTCATTCC AACCACAA.. 763 AATTAATCGT AACGACTAAC TGACGACGAT GACGTATATA ACTTAAACTT TGTTAATAAG 97988 .......... .......... .......... .......... .......... .......... 763 ATATTTTAAA TGGTAGGTGT TGGGATTTGG ATGGGCTGGA ATTTTCAGAA AGTACTTGGT 98048 | | |||||| | | ||||| | |||| || | | | || .......... ......GGTT GGGGATTATG TTTGGCTGTA TATTTCTAAA AAGTCGT-GT 806 TGAGC-CAGC AGCCATGTGG TGGCCTTCCA ATCT-TGTCC AAGTCTCATT ATTCAGGTAA 98106 ||||| || | ||| |||| || ||| || || | ||| || ||| | | ||| || TGAGCACAAT ACCCA-GTGG TGCGCTTTCA ATTTATGTAG AATTCTTA-T ATTAAG.... 860 GTTTTGTAAA ATAATTTTCA AACCTCTTTG TCGAAAAGTT CAAGGAGAAA AAAATAATTT 98166 .......... .......... .......... .......... .......... .......... 860 TTATACAAGA TAAATTTCTG CTAAATAGTT TCAAGAGTAT TTAGACGGAT CACTATTATT 98226 .......... .......... .......... .......... .......... .......... 860 ATTTTTGGTA GGTTGCGGCT GATAAATACG ACAGCGATCC CACAGGTTGC TTTTGTTTTT 98286 .......... .......... .......... .......... .......... .......... 860 GAAAATAATA TCTTTGGGAA TTAGGTGAAA AATCAATAAT TTTAGAAGAT ATTTTATATG 98346 .......... .......... .......... .......... .......... .......... 860 GAAATTTCAT TATGTTAGGT AATTAGATAT ATATCAATTT TGTTTTTCTT GAAAACAGAG 98406 .......... .......... .......... .......... .......... .......... 860 TAATAGTAAT GGAGGATCCT TTCACCTAAA AAAGATTCAT GTTTTTATTC TATAGTAATG 98466 .......... .......... .......... .......... .......... .......... 860 TAATAATTCC TCTCAAGATT AAACTTTTAT CCACTTTTCG TATAATTGCC ACAAATTAGT 98526 .......... .......... .......... .......... .......... .......... 860 GAACTGAATT GTAGATTCAA ACTCGTAACA CTGTGATTCA AGTTATAACC ATAGGATGTC 98586 .......... .......... .......... .......... .......... .......... 860 CCATAGGGGA CTACTCTGCT TCACAGGAAT TGATTGCCAA ATTCACATAC ATCTGTCAGC 98646 .......... .......... .......... .......... .......... .......... 860 GCTTGTTAGT TTTAACATAG AGCTTCCTTC ATTTGCAGGG CTTT 98690 || ||| .......... .......... .......... ........GG GTTT 866 hqPGS_C08SLm0006K11.1+_SGN-U337591+ (97094 97274,97433 97926,98005 98102) ******************************************************************************** EST sequence 19 +strand 1170 n (File: SGN-U320870+) 1 GATAAGAAGA AAAGCTGAGT ATGAAGAGCA CATCAATTTC CTCATTACTT CCATATCCAA 61 AAATCCTCTT CAGCAGAAGA GCATTTCCCC CAATTAATTT CTCAAGCACA GCTCCATTTT 121 CAGGGCAGGC AAAATTTCTA AGCATAAATT GCAGTAATAG CTCGGAAAAT GGTGAAATGG 181 GGAATTTGAA GGATGCATTG ACTGGTATAG TGGACGAAAG AGTAGAGGAA CTTTTGAAGA 241 GAGAAGAAAA TAGGGTTTTA CTTGATGGGT TGGAGAAAGC AACGCTGAGA GTAGAAATGG 301 CAAAGAAAGA ACTTGCTGAA ATTGAAAGAC AAGAATTGGA GGCTAAATTG CTAAAGGATT 361 ATATCACCCA GCTTGAAACT AGAACTTCTG AGATTGCAGA ATGCCAGAAA GATATTTTAG 421 AAGCAAGAGC AATGATTGAA GAAGCTGAGC GTTCCCTCAA CGTTAGTGGT GATGCTAGAA 481 AGAGAGATCC AACAGACGGA GATGTAGTGA ATAGAGATGA GGAAAGAGTA GAATCCGTAA 541 AAGCAGCTTC ACTTTCTGCA ATTGTTGGCA CACTTGCAGG ACTTCCCATT TTCTTAAGTC 601 GTATCTCCAG CAGTTCTGAG CTAATACTCC CTCTGTCAAT CACATTTATT AGTTGTGCTT 661 TGTTTGGTGT AACCTTCCGC TATGCTGTAA GAAGAGACTT CGATAATTTT CAACTCAAGT 721 CAGGAACATC TGCAGCATTT GGCGTTGTCA AAGGCCTTGC TACACTTGGA GGTGGACCAC 781 CATTGGAGTT GGATGCAGCC AGCTTCTGGT CCCATGCTCT TGATGGCGCA GTCTATGTCT 841 CGGAGAATCT TTTGATCTTC CTTTTTGCTG GAGTTGGCCT GGATTTATGC TTTAAGCTGA 901 GGATTTTGAG CCCTTTTCCC ATTGATAGAT CAATTTCAGA GACGGATAAA AGCTAAACAT 961 CTTGTTGCCT ATTTATTACT TCTGAGTGTA TATACAGAGA CCCAGTAAAT TAACTCTCTA 1021 ACAATTGCTT AGATAGAATT ATACTTGAAA AGCGCCATTC ACTGCAATTA TCCATAAATT 1081 CAGTAAAATA TTGTCAGGTC AGTCACAGGA GACTAGTTTC AGAAGGGATA AAGCTGCACT 1141 TCGAGTATCT TTCTGTCATT CAAGTTATCT Predicted gene structure (within gDNA segment 101441 to 105451): Exon 1 102041 102432 ( 392 n); cDNA 1 392 ( 392 n); score: 1.000 Intron 1 102433 103635 (1203 n); Pd: 0.967 (s: 1.00), Pa: 0.962 (s: 1.00) Exon 2 103636 103996 ( 361 n); cDNA 393 753 ( 361 n); score: 1.000 Intron 2 103997 104424 ( 428 n); Pd: 0.996 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 104425 104841 ( 417 n); cDNA 754 1170 ( 417 n); score: 1.000 MATCH C08SLm0006K11.1+ SGN-U320870+ 1.000 1170 1.000 C PGS_C08SLm0006K11.1+_SGN-U320870+ (102041 102432,103636 103996,104425 104841) Alignment (genomic DNA sequence = upper lines): GATAAGAAGA AAAGCTGAGT ATGAAGAGCA CATCAATTTC CTCATTACTT CCATATCCAA 102100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAGAAGA AAAGCTGAGT ATGAAGAGCA CATCAATTTC CTCATTACTT CCATATCCAA 60 AAATCCTCTT CAGCAGAAGA GCATTTCCCC CAATTAATTT CTCAAGCACA GCTCCATTTT 102160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCCTCTT CAGCAGAAGA GCATTTCCCC CAATTAATTT CTCAAGCACA GCTCCATTTT 120 CAGGGCAGGC AAAATTTCTA AGCATAAATT GCAGTAATAG CTCGGAAAAT GGTGAAATGG 102220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGCAGGC AAAATTTCTA AGCATAAATT GCAGTAATAG CTCGGAAAAT GGTGAAATGG 180 GGAATTTGAA GGATGCATTG ACTGGTATAG TGGACGAAAG AGTAGAGGAA CTTTTGAAGA 102280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATTTGAA GGATGCATTG ACTGGTATAG TGGACGAAAG AGTAGAGGAA CTTTTGAAGA 240 GAGAAGAAAA TAGGGTTTTA CTTGATGGGT TGGAGAAAGC AACGCTGAGA GTAGAAATGG 102340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGAAAA TAGGGTTTTA CTTGATGGGT TGGAGAAAGC AACGCTGAGA GTAGAAATGG 300 CAAAGAAAGA ACTTGCTGAA ATTGAAAGAC AAGAATTGGA GGCTAAATTG CTAAAGGATT 102400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAAAGA ACTTGCTGAA ATTGAAAGAC AAGAATTGGA GGCTAAATTG CTAAAGGATT 360 ATATCACCCA GCTTGAAACT AGAACTTCTG AGGTATGTTT TATATATTTG AAGGATTAAG 102460 |||||||||| |||||||||| |||||||||| || ATATCACCCA GCTTGAAACT AGAACTTCTG AG........ .......... .......... 392 CTGAATTGTT GGTTTAATAT ATAATTTATG TACACATGTT ACGAAAAGTA AACAGACATT 102520 .......... .......... .......... .......... .......... .......... 392 TGCGATCAGG TGTCAGGTAT AAATCTCAAC AGACACAAAA ATACTAGTAT GTGATTTCTT 102580 .......... .......... .......... .......... .......... .......... 392 TACTTCTGTC TTAGCTGTGA TGGATAAAGT TATATGGTAA CTGTGGTTGA TTGGATAGAG 102640 .......... .......... .......... .......... .......... .......... 392 TTATTTGGTA CGCGTTGTTG GTGGGAGATA GGTATGGCGT AGAATTAGTT TAGGGGCGTG 102700 .......... .......... .......... .......... .......... .......... 392 AAAGCTGACT CGAACGCTAT GAAAAATTAA ATCTTTATTA TCCCTTCTTA CTCGGACTTC 102760 .......... .......... .......... .......... .......... .......... 392 AATTGTTTCG TCTAGTCATA ACAATTCGAT TGAGTAAACA TATGCGCAAT ATGACTGTAT 102820 .......... .......... .......... .......... .......... .......... 392 AACTCTATTT ACAAAGGAAC AAGTGAATCA ATGCATTTGG GCATAGGTAG CCCTCTGCTG 102880 .......... .......... .......... .......... .......... .......... 392 TTCAATGTTA TGCTGTTATC TCAGTATGTA TAGTATCATA TTCTAGCTAT ATATTGAGAG 102940 .......... .......... .......... .......... .......... .......... 392 AAAGGGAGAA CTTTGTTTTG GATATTCTTT TTATATTGAC TGGGAATATT ATTGGATCCT 103000 .......... .......... .......... .......... .......... .......... 392 ACATTTTTGT CATTATGCAT AGATTGTTTT GAATTGCAAA TTTGCAATTG CTTAACCATG 103060 .......... .......... .......... .......... .......... .......... 392 GTAAAATCCA GAGCAATGAT TTGAAATACT TGGAGGCTTT ATAGTAGTCT GTAGATGTAA 103120 .......... .......... .......... .......... .......... .......... 392 ATTCTATGAA TTTTCGAGAC CATAATAGAG TTACTTGATT ATATGCTCAA AAAAAACTAA 103180 .......... .......... .......... .......... .......... .......... 392 TGCATTGTCT TAAGGGATTG TAAACGAACT TCTTACTAAG GCATACCCGG GCAAAGGGGA 103240 .......... .......... .......... .......... .......... .......... 392 CTCTGAAGCA AACTCTGTCC AGATTTACAA AAATCATGTT TTAACCCCTT GTGTTCTCGT 103300 .......... .......... .......... .......... .......... .......... 392 GTTGGATAAA GTGAGACTTA CAGAATGTCG AACTTCAGGA AACCGTTAAG GAACCTTGTC 103360 .......... .......... .......... .......... .......... .......... 392 CCCCGGCCCT TGATCATTGT GTAAATAGAG CATAATGAAC ACAAAAGGAT TTTTAGAACT 103420 .......... .......... .......... .......... .......... .......... 392 GATATCTATT ACTTTGGGAT TGAGCATAGT TGAATGATTG ATTGAAATGT TTTAGCACCT 103480 .......... .......... .......... .......... .......... .......... 392 TACAAAAGGA GGGTGCTTCA AGTGTCCAAA CGTCTCAAGA ATGATTACAT TGTTCTTAGT 103540 .......... .......... .......... .......... .......... .......... 392 ATTTCAGATG TTCTAAAGAC GTCATTGGAG CTTTTCTTGA TCAACTTTTT GTCCTCTCTA 103600 .......... .......... .......... .......... .......... .......... 392 ATAGTTAAGG TACTGATTGG TTGATGCAAT TGAAGATTGC AGAATGCCAG AAAGATATTT 103660 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATTGC AGAATGCCAG AAAGATATTT 417 TAGAAGCAAG AGCAATGATT GAAGAAGCTG AGCGTTCCCT CAACGTTAGT GGTGATGCTA 103720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAGCAAG AGCAATGATT GAAGAAGCTG AGCGTTCCCT CAACGTTAGT GGTGATGCTA 477 GAAAGAGAGA TCCAACAGAC GGAGATGTAG TGAATAGAGA TGAGGAAAGA GTAGAATCCG 103780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAGAGA TCCAACAGAC GGAGATGTAG TGAATAGAGA TGAGGAAAGA GTAGAATCCG 537 TAAAAGCAGC TTCACTTTCT GCAATTGTTG GCACACTTGC AGGACTTCCC ATTTTCTTAA 103840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAGCAGC TTCACTTTCT GCAATTGTTG GCACACTTGC AGGACTTCCC ATTTTCTTAA 597 GTCGTATCTC CAGCAGTTCT GAGCTAATAC TCCCTCTGTC AATCACATTT ATTAGTTGTG 103900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGTATCTC CAGCAGTTCT GAGCTAATAC TCCCTCTGTC AATCACATTT ATTAGTTGTG 657 CTTTGTTTGG TGTAACCTTC CGCTATGCTG TAAGAAGAGA CTTCGATAAT TTTCAACTCA 103960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTTTGG TGTAACCTTC CGCTATGCTG TAAGAAGAGA CTTCGATAAT TTTCAACTCA 717 AGTCAGGAAC ATCTGCAGCA TTTGGCGTTG TCAAAGGTAT TATACTCTCA TGCTAGGTAT 104020 |||||||||| |||||||||| |||||||||| |||||| AGTCAGGAAC ATCTGCAGCA TTTGGCGTTG TCAAAG.... .......... .......... 753 TGTAATGTGT CGCCTTTCTC CTTCCATATT CTTGTGTAAT TTTTTGGAAT AGGAAGGAGT 104080 .......... .......... .......... .......... .......... .......... 753 AGGTCAAAGT CTTGAGGATT TTATAGCATC AAGGGTTCAT TATGGGGCTA CGCAAGGCAT 104140 .......... .......... .......... .......... .......... .......... 753 ACATACCAAA ATGAAGGGTT CAATTGGCGT AGTAATTGAT TGGCTAGATT GCGGGTTCAA 104200 .......... .......... .......... .......... .......... .......... 753 TGTGCTGAGA AACAATAATC TCAAGGTTAT TCCTTGCTGA GTTTGGATGC TTGTTTCGTT 104260 .......... .......... .......... .......... .......... .......... 753 GCTATCGATG CACACATATT CAGTTCCATC CATCTTACTA CCTTGGGATA AATTGAAGTA 104320 .......... .......... .......... .......... .......... .......... 753 TTCTGGATTT TTTGTCTGTA CATATGATCC TGTTCTTTCC AAAACGAGTT TCTGCGATAA 104380 .......... .......... .......... .......... .......... .......... 753 TTTGTTTTTT TAAGGTTAAA AAGATTCTAT TGCATTCAAT GCAGGCCTTG CTACACTTGG 104440 |||||| |||||||||| .......... .......... .......... .......... ....GCCTTG CTACACTTGG 769 AGGTGGACCA CCATTGGAGT TGGATGCAGC CAGCTTCTGG TCCCATGCTC TTGATGGCGC 104500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGACCA CCATTGGAGT TGGATGCAGC CAGCTTCTGG TCCCATGCTC TTGATGGCGC 829 AGTCTATGTC TCGGAGAATC TTTTGATCTT CCTTTTTGCT GGAGTTGGCC TGGATTTATG 104560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTATGTC TCGGAGAATC TTTTGATCTT CCTTTTTGCT GGAGTTGGCC TGGATTTATG 889 CTTTAAGCTG AGGATTTTGA GCCCTTTTCC CATTGATAGA TCAATTTCAG AGACGGATAA 104620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAGCTG AGGATTTTGA GCCCTTTTCC CATTGATAGA TCAATTTCAG AGACGGATAA 949 AAGCTAAACA TCTTGTTGCC TATTTATTAC TTCTGAGTGT ATATACAGAG ACCCAGTAAA 104680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTAAACA TCTTGTTGCC TATTTATTAC TTCTGAGTGT ATATACAGAG ACCCAGTAAA 1009 TTAACTCTCT AACAATTGCT TAGATAGAAT TATACTTGAA AAGCGCCATT CACTGCAATT 104740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACTCTCT AACAATTGCT TAGATAGAAT TATACTTGAA AAGCGCCATT CACTGCAATT 1069 ATCCATAAAT TCAGTAAAAT ATTGTCAGGT CAGTCACAGG AGACTAGTTT CAGAAGGGAT 104800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCATAAAT TCAGTAAAAT ATTGTCAGGT CAGTCACAGG AGACTAGTTT CAGAAGGGAT 1129 AAAGCTGCAC TTCGAGTATC TTTCTGTCAT TCAAGTTATC T 104841 |||||||||| |||||||||| |||||||||| |||||||||| | AAAGCTGCAC TTCGAGTATC TTTCTGTCAT TCAAGTTATC T 1170 hqPGS_C08SLm0006K11.1+_SGN-U320870+ (102041 102432,103636 103996,104425 104841) ******************************************************************************** EST sequence 13 +strand 931 n (File: SGN-U337240+) 1 CATAAAGCTG GAGCCTCACC GCGGTGGCGG CCGCTCTAGA ACTAGTGGAT CCCCCGGGCT 61 GCAGGAATTC GGCACGAGGG AAGAAAATAG GGTTTTACTT GATGGGTTGG AGAAAGCAAC 121 GCTGAGAGTA GAAATGGCAA AGAAAGAACT TGCTGAAATT GAAAGACAAG AATTGGAGGC 181 TAAATTGCTA AAGGATTATA TCACCCAGCT TGAAACTAGA ACTTCTGAGT TAAGGTACTG 241 ATTGGTTGAT GCAATTGAAG ATTGCAGAAT GCCAGAAAGA TATTTTAGAA GCAAGAGCAA 301 TGATTGAAGA AGCTGAGCGT TCCCTCAACG TTAGTGGTGA TGCTAGAAAG AGAGATCCAA 361 CAGACGGAGA TGTAGTGAAT AGAGATGAGG AAAGAGTAGA ATCCGTAAAA GCAGCTTCAC 421 TTTCTGCAAT TGTTGGCACA CTTGCAGGAC TTCCCATTTT CTTAAGTCGT ATCTCCAGCA 481 GTTCTGAGCT AATACTCCCT CTGTCAATCA CATTTATTAG TTGTGCTTTG TTTGGTGTAA 541 CCTTCCGCTA TGCTGTAAGA AGAGACTTCG ATAATTTTCA ACTCAAGTCA GGAACATCTG 601 CAGCATTTGG CGTTGTCAAA GGCCTTGCTA CACTTGGAGG TGGACCACCA TTGGAGTTGG 661 ATGCAGCCAG CTTCTGGNTC CATGCTCTTG ATGGCGCAGT CTATGTCTCG GAGAATCTTT 721 TGATCTTCCT TTTTGCTGGA AGTGGCCCTG GATTTATGNC TTAAGCTGNA GATTTTGAGC 781 CCCTTTTCCA TTGATAGATC AAATTCAGAG ACGGATAAAA GCTNAACATN NCTGTGCCTA 841 TTTATTACTN CTGAGTGTAT ATACAGAGAC CCAGTAAATT AACTCTCTAA CAATTGCTTA 901 GATAGAATAT ACTTGAAAAG CGCCATTCAC A Predicted gene structure (within gDNA segment 100893 to 105353): Exon 1 102280 102432 ( 153 n); cDNA 77 229 ( 153 n); score: 0.993 Intron 1 102433 103604 (1172 n); Pd: 0.967 (s: 1.00), Pa: 0.683 (s: 1.00) Exon 2 103605 103996 ( 392 n); cDNA 230 621 ( 392 n); score: 1.000 Intron 2 103997 104424 ( 428 n); Pd: 0.996 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 104425 104733 ( 309 n); cDNA 622 930 ( 309 n); score: 0.930 MATCH C08SLm0006K11.1+ SGN-U337240+ 0.974 854 0.917 C PGS_C08SLm0006K11.1+_SGN-U337240+ (102280 102432,103605 103996,104425 104733) Alignment (genomic DNA sequence = upper lines): AGAGAAGAAA ATAGGGTTTT ACTTGATGGG TTGGAGAAAG CAACGCTGAG AGTAGAAATG 102339 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAAGAAA ATAGGGTTTT ACTTGATGGG TTGGAGAAAG CAACGCTGAG AGTAGAAATG 136 GCAAAGAAAG AACTTGCTGA AATTGAAAGA CAAGAATTGG AGGCTAAATT GCTAAAGGAT 102399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAGAAAG AACTTGCTGA AATTGAAAGA CAAGAATTGG AGGCTAAATT GCTAAAGGAT 196 TATATCACCC AGCTTGAAAC TAGAACTTCT GAGGTATGTT TTATATATTT GAAGGATTAA 102459 |||||||||| |||||||||| |||||||||| ||| TATATCACCC AGCTTGAAAC TAGAACTTCT GAG....... .......... .......... 229 GCTGAATTGT TGGTTTAATA TATAATTTAT GTACACATGT TACGAAAAGT AAACAGACAT 102519 .......... .......... .......... .......... .......... .......... 229 TTGCGATCAG GTGTCAGGTA TAAATCTCAA CAGACACAAA AATACTAGTA TGTGATTTCT 102579 .......... .......... .......... .......... .......... .......... 229 TTACTTCTGT CTTAGCTGTG ATGGATAAAG TTATATGGTA ACTGTGGTTG ATTGGATAGA 102639 .......... .......... .......... .......... .......... .......... 229 GTTATTTGGT ACGCGTTGTT GGTGGGAGAT AGGTATGGCG TAGAATTAGT TTAGGGGCGT 102699 .......... .......... .......... .......... .......... .......... 229 GAAAGCTGAC TCGAACGCTA TGAAAAATTA AATCTTTATT ATCCCTTCTT ACTCGGACTT 102759 .......... .......... .......... .......... .......... .......... 229 CAATTGTTTC GTCTAGTCAT AACAATTCGA TTGAGTAAAC ATATGCGCAA TATGACTGTA 102819 .......... .......... .......... .......... .......... .......... 229 TAACTCTATT TACAAAGGAA CAAGTGAATC AATGCATTTG GGCATAGGTA GCCCTCTGCT 102879 .......... .......... .......... .......... .......... .......... 229 GTTCAATGTT ATGCTGTTAT CTCAGTATGT ATAGTATCAT ATTCTAGCTA TATATTGAGA 102939 .......... .......... .......... .......... .......... .......... 229 GAAAGGGAGA ACTTTGTTTT GGATATTCTT TTTATATTGA CTGGGAATAT TATTGGATCC 102999 .......... .......... .......... .......... .......... .......... 229 TACATTTTTG TCATTATGCA TAGATTGTTT TGAATTGCAA ATTTGCAATT GCTTAACCAT 103059 .......... .......... .......... .......... .......... .......... 229 GGTAAAATCC AGAGCAATGA TTTGAAATAC TTGGAGGCTT TATAGTAGTC TGTAGATGTA 103119 .......... .......... .......... .......... .......... .......... 229 AATTCTATGA ATTTTCGAGA CCATAATAGA GTTACTTGAT TATATGCTCA AAAAAAACTA 103179 .......... .......... .......... .......... .......... .......... 229 ATGCATTGTC TTAAGGGATT GTAAACGAAC TTCTTACTAA GGCATACCCG GGCAAAGGGG 103239 .......... .......... .......... .......... .......... .......... 229 ACTCTGAAGC AAACTCTGTC CAGATTTACA AAAATCATGT TTTAACCCCT TGTGTTCTCG 103299 .......... .......... .......... .......... .......... .......... 229 TGTTGGATAA AGTGAGACTT ACAGAATGTC GAACTTCAGG AAACCGTTAA GGAACCTTGT 103359 .......... .......... .......... .......... .......... .......... 229 CCCCCGGCCC TTGATCATTG TGTAAATAGA GCATAATGAA CACAAAAGGA TTTTTAGAAC 103419 .......... .......... .......... .......... .......... .......... 229 TGATATCTAT TACTTTGGGA TTGAGCATAG TTGAATGATT GATTGAAATG TTTTAGCACC 103479 .......... .......... .......... .......... .......... .......... 229 TTACAAAAGG AGGGTGCTTC AAGTGTCCAA ACGTCTCAAG AATGATTACA TTGTTCTTAG 103539 .......... .......... .......... .......... .......... .......... 229 TATTTCAGAT GTTCTAAAGA CGTCATTGGA GCTTTTCTTG ATCAACTTTT TGTCCTCTCT 103599 .......... .......... .......... .......... .......... .......... 229 AATAGTTAAG GTACTGATTG GTTGATGCAA TTGAAGATTG CAGAATGCCA GAAAGATATT 103659 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TTAAG GTACTGATTG GTTGATGCAA TTGAAGATTG CAGAATGCCA GAAAGATATT 284 TTAGAAGCAA GAGCAATGAT TGAAGAAGCT GAGCGTTCCC TCAACGTTAG TGGTGATGCT 103719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAAGCAA GAGCAATGAT TGAAGAAGCT GAGCGTTCCC TCAACGTTAG TGGTGATGCT 344 AGAAAGAGAG ATCCAACAGA CGGAGATGTA GTGAATAGAG ATGAGGAAAG AGTAGAATCC 103779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGAGAG ATCCAACAGA CGGAGATGTA GTGAATAGAG ATGAGGAAAG AGTAGAATCC 404 GTAAAAGCAG CTTCACTTTC TGCAATTGTT GGCACACTTG CAGGACTTCC CATTTTCTTA 103839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAAAGCAG CTTCACTTTC TGCAATTGTT GGCACACTTG CAGGACTTCC CATTTTCTTA 464 AGTCGTATCT CCAGCAGTTC TGAGCTAATA CTCCCTCTGT CAATCACATT TATTAGTTGT 103899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCGTATCT CCAGCAGTTC TGAGCTAATA CTCCCTCTGT CAATCACATT TATTAGTTGT 524 GCTTTGTTTG GTGTAACCTT CCGCTATGCT GTAAGAAGAG ACTTCGATAA TTTTCAACTC 103959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTGTTTG GTGTAACCTT CCGCTATGCT GTAAGAAGAG ACTTCGATAA TTTTCAACTC 584 AAGTCAGGAA CATCTGCAGC ATTTGGCGTT GTCAAAGGTA TTATACTCTC ATGCTAGGTA 104019 |||||||||| |||||||||| |||||||||| ||||||| AAGTCAGGAA CATCTGCAGC ATTTGGCGTT GTCAAAG... .......... .......... 621 TTGTAATGTG TCGCCTTTCT CCTTCCATAT TCTTGTGTAA TTTTTTGGAA TAGGAAGGAG 104079 .......... .......... .......... .......... .......... .......... 621 TAGGTCAAAG TCTTGAGGAT TTTATAGCAT CAAGGGTTCA TTATGGGGCT ACGCAAGGCA 104139 .......... .......... .......... .......... .......... .......... 621 TACATACCAA AATGAAGGGT TCAATTGGCG TAGTAATTGA TTGGCTAGAT TGCGGGTTCA 104199 .......... .......... .......... .......... .......... .......... 621 ATGTGCTGAG AAACAATAAT CTCAAGGTTA TTCCTTGCTG AGTTTGGATG CTTGTTTCGT 104259 .......... .......... .......... .......... .......... .......... 621 TGCTATCGAT GCACACATAT TCAGTTCCAT CCATCTTACT ACCTTGGGAT AAATTGAAGT 104319 .......... .......... .......... .......... .......... .......... 621 ATTCTGGATT TTTTGTCTGT ACATATGATC CTGTTCTTTC CAAAACGAGT TTCTGCGATA 104379 .......... .......... .......... .......... .......... .......... 621 ATTTGTTTTT TTAAGGTTAA AAAGATTCTA TTGCATTCAA TGCAGGCCTT GCTACACTTG 104439 ||||| |||||||||| .......... .......... .......... .......... .....GCCTT GCTACACTTG 636 GAGGTGGACC ACCATTGGAG TTGGATGCAG CCAGCTTCTG GTCCCATGCT CTTGATGGCG 104499 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| |||||||||| GAGGTGGACC ACCATTGGAG TTGGATGCAG CCAGCTTCTG GNTCCATGCT CTTGATGGCG 696 CAGTCTATGT CTCGGAGAAT CTTTTGATCT TCCTTTTTGC TGG-AGTTGG CCTGGATTTA 104558 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| | |||||||||| CAGTCTATGT CTCGGAGAAT CTTTTGATCT TCCTTTTTGC TGGAAGTGGC CCTGGATTTA 756 TGCTTTAAGC TGAGGATTTT GAGCCCTTTT CCCATTGATA GATCAATTTC AGAGACGGAT 104618 || |||||| || |||||| |||||| ||| ||||||||| |||||| ||| |||||||||| TGNCTTAAGC TGNAGATTTT GAGCCCCTTT TCCATTGATA GATCAAATTC AGAGACGGAT 816 AAAAGCTAAA CATCTTGTTG CCTATTTATT ACTTCTGAGT GTATATACAG AGACCCAGTA 104678 ||||||| || ||| || |||||||||| ||| |||||| |||||||||| |||||||||| AAAAGCTNAA CATNNCTGTG CCTATTTATT ACTNCTGAGT GTATATACAG AGACCCAGTA 876 AATTAACTCT CTAACAATTG CTTAGATAGA ATTATACTTG AAAAGCGCCA TTCAC 104733 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ||||| AATTAACTCT CTAACAATTG CTTAGATAGA A-TATACTTG AAAAGCGCCA TTCAC 930 hqPGS_C08SLm0006K11.1+_SGN-U337240+ (102280 102432,103605 103996,104425 104733) ******************************************************************************** EST sequence 29 +strand 579 n (File: SGN-U330497+) 1 ACTTGCTGGC TTGTGTGAGG GATACACTGG TTCAGACATT CTTGAAGCCT GCAAGCAAGC 61 TGCCTTTATT CCTCTTGGGG AGTATTTGCA AGATGAGAAG AAAGCAGAGC AATCACAGGC 121 ACCAAGACCA TTGTCTCAGT CTGATATAGA GAGAGCAGTG GCTGAATCAA AGAGGACCAG 181 GGTTTCTGCT AAGAAACCAA CTATTGTGAG CTTTCGGTTG GATGATTATG AGGATTTAGA 241 CTGAGACTGG CTCCAGTTGA TGACACACTT GACATCCGTT GAAGATATCA TTCTTTAGGC 301 GTGGCCCAGC CCTTTTTGAA TCTCAATGCT CTAACCTGTT TAGGAATTGG AAGATATATA 361 GGTCATTTAA CTTGCATTGT TTCAATGTTG TAAATACCAT GAACAAGTAA GTAGTCATTG 421 TTACAAGGTT CAGTTTAAAT TTCTCCTCCA CGAGCGTTTA GCTGCAGCAC ACTCATGTGG 481 ACGCATCCCC ATAGTTTTTT TGAAGACTAT ATCATGTAAT ATTGTTTGTT ATTATAAAGG 541 AATTGTCTTT GGAAATACCC CAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 106200 to 104085): Exon 1 105600 105483 ( 118 n); cDNA 1 118 ( 118 n); score: 1.000 Intron 1 105482 105400 ( 83 n); Pd: 0.883 (s: 1.00), Pa: 0.927 (s: 1.00) Exon 2 105399 105286 ( 114 n); cDNA 119 232 ( 114 n); score: 1.000 Intron 2 105285 105186 ( 100 n); Pd: 0.959 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 105185 104855 ( 331 n); cDNA 233 563 ( 331 n); score: 1.000 PPA cDNA 564 579 MATCH C08SLm0006K11.1- SGN-U330497+ 1.000 563 0.972 C PGS_C08SLm0006K11.1-_SGN-U330497+ (105600 105483,105399 105286,105185 104855) Alignment (genomic DNA sequence = upper lines): ACTTGCTGGC TTGTGTGAGG GATACACTGG TTCAGACATT CTTGAAGCCT GCAAGCAAGC 105541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGCTGGC TTGTGTGAGG GATACACTGG TTCAGACATT CTTGAAGCCT GCAAGCAAGC 60 TGCCTTTATT CCTCTTGGGG AGTATTTGCA AGATGAGAAG AAAGCAGAGC AATCACAGGT 105481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGCCTTTATT CCTCTTGGGG AGTATTTGCA AGATGAGAAG AAAGCAGAGC AATCACAG.. 118 GGCTCTCTCT CCCTCTAGAT CAAATATCTG TGCATTTTGT TCTGACTTGT AGAAAAAGAC 105421 .......... .......... .......... .......... .......... .......... 118 ATGGTAACTC CTCAGTTACA GGCACCAAGA CCATTGTCTC AGTCTGATAT AGAGAGAGCA 105361 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GCACCAAGA CCATTGTCTC AGTCTGATAT AGAGAGAGCA 157 GTGGCTGAAT CAAAGAGGAC CAGGGTTTCT GCTAAGAAAC CAACTATTGT GAGCTTTCGG 105301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCTGAAT CAAAGAGGAC CAGGGTTTCT GCTAAGAAAC CAACTATTGT GAGCTTTCGG 217 TTGGATGATT ATGAGGTTCT CACTTATTCT TTTAGGTTAT ATCAAAATGT AAAGTCTGTT 105241 |||||||||| ||||| TTGGATGATT ATGAG..... .......... .......... .......... .......... 232 TGACAGATCA TTGGTGTCTT TTCTTCAAAT AACAATATAT TTTTCATACT TTCAGGATTT 105181 ||||| .......... .......... .......... .......... .......... .....GATTT 237 AGACTGAGAC TGGCTCCAGT TGATGACACA CTTGACATCC GTTGAAGATA TCATTCTTTA 105121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTGAGAC TGGCTCCAGT TGATGACACA CTTGACATCC GTTGAAGATA TCATTCTTTA 297 GGCGTGGCCC AGCCCTTTTT GAATCTCAAT GCTCTAACCT GTTTAGGAAT TGGAAGATAT 105061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGTGGCCC AGCCCTTTTT GAATCTCAAT GCTCTAACCT GTTTAGGAAT TGGAAGATAT 357 ATAGGTCATT TAACTTGCAT TGTTTCAATG TTGTAAATAC CATGAACAAG TAAGTAGTCA 105001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGTCATT TAACTTGCAT TGTTTCAATG TTGTAAATAC CATGAACAAG TAAGTAGTCA 417 TTGTTACAAG GTTCAGTTTA AATTTCTCCT CCACGAGCGT TTAGCTGCAG CACACTCATG 104941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTACAAG GTTCAGTTTA AATTTCTCCT CCACGAGCGT TTAGCTGCAG CACACTCATG 477 TGGACGCATC CCCATAGTTT TTTTGAAGAC TATATCATGT AATATTGTTT GTTATTATAA 104881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACGCATC CCCATAGTTT TTTTGAAGAC TATATCATGT AATATTGTTT GTTATTATAA 537 AGGAATTGTC TTTGGAAATA CCCCAA 104855 |||||||||| |||||||||| |||||| AGGAATTGTC TTTGGAAATA CCCCAA 563 hqPGS_C08SLm0006K11.1-_SGN-U330497+ (105600 105483,105399 105286,105185 104855) ******************************************************************************** EST sequence 27 +strand 1297 n (File: SGN-U319525+) 1 ACAGTATTCA CGAATCTTTT TCTAACTAAT AGTACTAATT CTATAATCCT AATTCTAACC 61 TAATCTACTT CGCCGGGCAC AGATTAGATG CTGCCGTCGC CGTTCTCTAT CTCCGCCAAT 121 GAAATCTCTC ACTTCCACTG CAGCTCTACT TCTTTCTACT TCTCCGCCGT CTTTACGATC 181 TTCTCTCTTA CCAAGTCTTC GACCTCTTCT TTATCGAGCT CGCCTCCGCA ACAAGCTTAA 241 TCTGAGAAGA TTGGGAAATG GAACTTGCCG GGCAGAGTTT GCAAACGATG TGCCTTACGC 301 CGCTGCTATT GGTGCTTGCA TTTTGAGCTC GTGGGTTTTC CCGACTACTT ACACGGAGGA 361 GGACGATGGT GAATCCACAA TTGATTCTGC TGATGCGAGG TTTGCTGTCA TGGCAATTAT 421 CAGCTTCATT CCGTATTTTA ATTGGATGAG TTGGGTTTTT GCGTGGTTGG ATACTGGGAA 481 ACCACGTTAT GCAGTTTATG CTCTTGTGTA TTTGGCTCCA TATTTAAGCA ACAACCTGTC 541 TCTATCTCCT GAAGATAGCT TTCTACCCAT TGCTAGCATC CTCTTGTGCA TCTTCCACAT 601 TCAGCTGGAA GCATTCCAAA AAGATGGAAA CTTTCAGGTA TTAGATAAAT TTACGGAGAC 661 TGGAACTTCA ATTGCTGGGA AGAAAGATGT AAGAATGTCA GAAAAGGAGG AAACATACGA 721 TCTTAAGAAG TTGTCTTCAG CAGATGAGAA AAGGAGTTGG GAAATTTCTA GAAGACCTGA 781 AAATCGTGAG CACTTGAATG AAGATGGAGA AGATCCTACT TCAAGGAAGC ATTAATTTTA 841 CCTGTTTAAG GCTGAGTTTT GACGGGTCTA ATGCCAATCC TTGGAAGGAG CACAATCATA 901 TGCTGGTGTG TAACTGTGAA AGTAGTTCAC TGACCAAACA ATAAGCATCT TCTGTACACA 961 ACGGATTGAT CTTATCGTTC TATGATTCAA CTCTACACCA AATATCTGAA TTGTCTCTTA 1021 TCAAAATTTC GACCAGGGCC TACTATGTTT TTGCAGTTGT AGAATAATGA CTGCCTTATC 1081 TGTAAGAGTG TACTGTGGGT AACACCCCTC ATGCTGTTTC TCTTCCTGAG TTCTATGTAT 1141 CAATTGTAGT TTGTTTTCTC AGAATTTTCA CGTTGAGCAG AGGTTCATGC TGTATTGGCA 1201 GGTGTGAGCT CATAAATTGT GTACCATCCT GAAGAATTTT CGTCAGTGCA GGCAGAACAT 1261 TATTTATCAC AATTTCATAT TCTGAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 111419 to 107212): Exon 1 110819 110576 ( 244 n); cDNA 1 244 ( 244 n); score: 1.000 Intron 1 110575 110463 ( 113 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 110462 110259 ( 204 n); cDNA 245 448 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 (s: 1.00), Pa: 0.910 (s: 1.00) Exon 3 110100 110021 ( 80 n); cDNA 449 528 ( 80 n); score: 1.000 Intron 3 110020 109387 ( 634 n); Pd: 0.990 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 109386 109311 ( 76 n); cDNA 529 604 ( 76 n); score: 1.000 Intron 4 109310 108691 ( 620 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 5 108690 108589 ( 102 n); cDNA 605 706 ( 102 n); score: 1.000 Intron 5 108588 108503 ( 86 n); Pd: 0.986 (s: 1.00), Pa: 0.933 (s: 1.00) Exon 6 108502 107922 ( 581 n); cDNA 707 1287 ( 581 n); score: 1.000 PPA cDNA 1288 1297 MATCH C08SLm0006K11.1- SGN-U319525+ 1.000 1287 0.992 C PGS_C08SLm0006K11.1-_SGN-U319525+ (110819 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 107922) Alignment (genomic DNA sequence = upper lines): ACAGTATTCA CGAATCTTTT TCTAACTAAT AGTACTAATT CTATAATCCT AATTCTAACC 110760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGTATTCA CGAATCTTTT TCTAACTAAT AGTACTAATT CTATAATCCT AATTCTAACC 60 TAATCTACTT CGCCGGGCAC AGATTAGATG CTGCCGTCGC CGTTCTCTAT CTCCGCCAAT 110700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCTACTT CGCCGGGCAC AGATTAGATG CTGCCGTCGC CGTTCTCTAT CTCCGCCAAT 120 GAAATCTCTC ACTTCCACTG CAGCTCTACT TCTTTCTACT TCTCCGCCGT CTTTACGATC 110640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATCTCTC ACTTCCACTG CAGCTCTACT TCTTTCTACT TCTCCGCCGT CTTTACGATC 180 TTCTCTCTTA CCAAGTCTTC GACCTCTTCT TTATCGAGCT CGCCTCCGCA ACAAGCTTAA 110580 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTCTTA CCAAGTCTTC GACCTCTTCT TTATCGAGCT CGCCTCCGCA ACAAGCTTAA 240 TCTGGTAATT AACTTAATTA CTACGTGTTC TAATCTCATT TTAACTTAAA AACCTACCTA 110520 |||| TCTG...... .......... .......... .......... .......... .......... 244 CATGTACTGG AATCAAAATG AGTTCAATAG AGCTGAAATA GGTTATTGAT TTTGTAGAGA 110460 ||| .......... .......... .......... .......... .......... .......AGA 247 AGATTGGGAA ATGGAACTTG CCGGGCAGAG TTTGCAAACG ATGTGCCTTA CGCCGCTGCT 110400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGGGAA ATGGAACTTG CCGGGCAGAG TTTGCAAACG ATGTGCCTTA CGCCGCTGCT 307 ATTGGTGCTT GCATTTTGAG CTCGTGGGTT TTCCCGACTA CTTACACGGA GGAGGACGAT 110340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGTGCTT GCATTTTGAG CTCGTGGGTT TTCCCGACTA CTTACACGGA GGAGGACGAT 367 GGTGAATCCA CAATTGATTC TGCTGATGCG AGGTTTGCTG TCATGGCAAT TATCAGCTTC 110280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAATCCA CAATTGATTC TGCTGATGCG AGGTTTGCTG TCATGGCAAT TATCAGCTTC 427 ATTCCGTATT TTAATTGGAT GGTGAGATTT TTTCTTAATC ATCATTTGTT TTAAATTGGA 110220 |||||||||| |||||||||| | ATTCCGTATT TTAATTGGAT G......... .......... .......... .......... 448 ATATAGGCGT TTAGGGTTGA GGAGCGTGAA GAGTTGTTGT TGTTTGGAAC CATTTAGGGG 110160 .......... .......... .......... .......... .......... .......... 448 ATTCATATAG CTAAGTCCAA CTAACTTGGG ATTGATTGAT TTGCTGGTTT ACTTTGTAGA 110100 | .......... .......... .......... .......... .......... .........A 449 GTTGGGTTTT TGCGTGGTTG GATACTGGGA AACCACGTTA TGCAGTTTAT GCTCTTGTGT 110040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGGTTTT TGCGTGGTTG GATACTGGGA AACCACGTTA TGCAGTTTAT GCTCTTGTGT 509 ATTTGGCTCC ATATTTAAGG TAAGGAGCTC TTAAAACTTT AGTTTTCTAG GTGATGTTTT 109980 |||||||||| ||||||||| ATTTGGCTCC ATATTTAAG. .......... .......... .......... .......... 528 AATATCATGT CTTGTCACCA CCCTGAACGT GCTTTAAGGA ATGTATTGAA GTTTGAACTA 109920 .......... .......... .......... .......... .......... .......... 528 GCAGAAAGAA AAAAAACACA TAGAGTTCTA TCTTGTCATC TATATTAACA AGGATCCTTC 109860 .......... .......... .......... .......... .......... .......... 528 ACGAGTTGTG GTAAATGAAG GATTGTACTC TATTTCCATG AATGACTGCT TATCCTTCTT 109800 .......... .......... .......... .......... .......... .......... 528 GATTTCCATG TTAAGCTTCC AACTCTGATA TGATTGTAAG ATTTAAAGTT TATTGTTGGA 109740 .......... .......... .......... .......... .......... .......... 528 AGACAATTAC CCCTAATTAT TGGACTAGAA AGACTTGTAA AATTTTAAAG TTCACTAACT 109680 .......... .......... .......... .......... .......... .......... 528 AGTCTCAGGG TTGGCACAAG GATTTTGACC AAGGAACTTG AAAATATGCA ATGAAATGGT 109620 .......... .......... .......... .......... .......... .......... 528 GCTAGTGAAG CTTGCCTGTG GGAACCCCTA CAGATTTTGA ACCACTCTAC AAAGACATCC 109560 .......... .......... .......... .......... .......... .......... 528 TTTGTTCTTT TTGTCCTTTC TTGGTAACAT CAGATTCTCT AGGAATTTGG TATACCCTGC 109500 .......... .......... .......... .......... .......... .......... 528 TGCTACAAGT TTAGGCAAAG GCATTATCAG CATTTTTTGA TGTTTAGTTG AGGCATTTTG 109440 .......... .......... .......... .......... .......... .......... 528 CCTTGATATT TATAACCAAG CATTTCAATC TTATGCTCTT TTATCGTATG CAGCAACAAC 109380 ||||||| .......... .......... .......... .......... .......... ...CAACAAC 535 CTGTCTCTAT CTCCTGAAGA TAGCTTTCTA CCCATTGCTA GCATCCTCTT GTGCATCTTC 109320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTCTAT CTCCTGAAGA TAGCTTTCTA CCCATTGCTA GCATCCTCTT GTGCATCTTC 595 CACATTCAGG TATATATTTA CAGTCTATCT GAAACTCTAT AAATTAATTA TGCTTGAGGT 109260 ||||||||| CACATTCAG. .......... .......... .......... .......... .......... 604 TCTCTGATAT AATCCTGGAA AGCGCAGCTC ACAGGGTTTA TTGCAAGCAG ACTAGAGCAT 109200 .......... .......... .......... .......... .......... .......... 604 CTAATCGTAG TTTTTGTTTC CGTTTTTGTT TCTTCCAATA GTGGGAGTTA TTGAATTCTA 109140 .......... .......... .......... .......... .......... .......... 604 TTTTTAGTAA ATTTTTCCTG TTTCCTTTTC TTTGTAGATT CTACTTAATA TATTGTTTAG 109080 .......... .......... .......... .......... .......... .......... 604 TAGATTTGGG ATTTGCTTTT CCTTGTTTTT ACTTATTTCA GTTGTTGATT CGGATAGCGA 109020 .......... .......... .......... .......... .......... .......... 604 TGTAATAGTT ATAAATACTT GCTGGCCTCA TAGTTAAGGG GGAGACGGAC TATTGCAAAT 108960 .......... .......... .......... .......... .......... .......... 604 ACAAACAAAA TTGTGATGTT AGAGATCTTA TAGTTAGGAT CGAGCTTGAA AACTACTTTA 108900 .......... .......... .......... .......... .......... .......... 604 AAGCTTGAAG TCTTCATGAT AATTCTTTTC TTCCTTTGAT GTGTATATCT TTGGTTATAT 108840 .......... .......... .......... .......... .......... .......... 604 CTTGTCATTC TATTTAGGGT CAGAGATCCT TTTTTTGCTC TTCAATTCCT TCAGTTATTT 108780 .......... .......... .......... .......... .......... .......... 604 GTATAATTCT ATTTCATTAT TTAGTTTATC ACTCCGCTTT GTGTATCCTG AATTGTATCA 108720 .......... .......... .......... .......... .......... .......... 604 TCCTCATTGA AAGTTTCATA TTGTTCCAGC TGGAAGCATT CCAAAAAGAT GGAAACTTTC 108660 | |||||||||| |||||||||| |||||||||| .......... .......... .........C TGGAAGCATT CCAAAAAGAT GGAAACTTTC 635 AGGTATTAGA TAAATTTACG GAGACTGGAA CTTCAATTGC TGGGAAGAAA GATGTAAGAA 108600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTATTAGA TAAATTTACG GAGACTGGAA CTTCAATTGC TGGGAAGAAA GATGTAAGAA 695 TGTCAGAAAA GGTATAGACC GTGTGAAGCA CTTATTGACA AATGTAAATG ATTTAGAAGT 108540 |||||||||| | TGTCAGAAAA G......... .......... .......... .......... .......... 706 TTATCATTCC TATCTAATTT TTCAAATTGT CATGAAGGAG GAAACATACG ATCTTAAGAA 108480 ||| |||||||||| |||||||||| .......... .......... .......... .......GAG GAAACATACG ATCTTAAGAA 729 GTTGTCTTCA GCAGATGAGA AAAGGAGTTG GGAAATTTCT AGAAGACCTG AAAATCGTGA 108420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTCTTCA GCAGATGAGA AAAGGAGTTG GGAAATTTCT AGAAGACCTG AAAATCGTGA 789 GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT ACCTGTTTAA 108360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTTGAAT GAAGATGGAG AAGATCCTAC TTCAAGGAAG CATTAATTTT ACCTGTTTAA 849 GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT ATGCTGGTGT 108300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGAGTTT TGACGGGTCT AATGCCAATC CTTGGAAGGA GCACAATCAT ATGCTGGTGT 909 GTAACTGTGA AAGTAGTTCA CTGACCAAAC AATAAGCATC TTCTGTACAC AACGGATTGA 108240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACTGTGA AAGTAGTTCA CTGACCAAAC AATAAGCATC TTCTGTACAC AACGGATTGA 969 TCTTATCGTT CTATGATTCA ACTCTACACC AAATATCTGA ATTGTCTCTT ATCAAAATTT 108180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTATCGTT CTATGATTCA ACTCTACACC AAATATCTGA ATTGTCTCTT ATCAAAATTT 1029 CGACCAGGGC CTACTATGTT TTTGCAGTTG TAGAATAATG ACTGCCTTAT CTGTAAGAGT 108120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACCAGGGC CTACTATGTT TTTGCAGTTG TAGAATAATG ACTGCCTTAT CTGTAAGAGT 1089 GTACTGTGGG TAACACCCCT CATGCTGTTT CTCTTCCTGA GTTCTATGTA TCAATTGTAG 108060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTGTGGG TAACACCCCT CATGCTGTTT CTCTTCCTGA GTTCTATGTA TCAATTGTAG 1149 TTTGTTTTCT CAGAATTTTC ACGTTGAGCA GAGGTTCATG CTGTATTGGC AGGTGTGAGC 108000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTTTCT CAGAATTTTC ACGTTGAGCA GAGGTTCATG CTGTATTGGC AGGTGTGAGC 1209 TCATAAATTG TGTACCATCC TGAAGAATTT TCGTCAGTGC AGGCAGAACA TTATTTATCA 107940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAAATTG TGTACCATCC TGAAGAATTT TCGTCAGTGC AGGCAGAACA TTATTTATCA 1269 CAATTTCATA TTCTGAAA 107922 |||||||||| |||||||| CAATTTCATA TTCTGAAA 1287 hqPGS_C08SLm0006K11.1-_SGN-U319525+ (110819 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 107922) ******************************************************************************** EST sequence 26 +strand 3231 n (File: SGN-U317107+) 1 TCACAATTGC ACAAGTAATT TGAATTCTCA TTATTTTTTT TCTATTTGTT TGCTAGAAAT 61 AAATAAATAA ATAAATTGAC ACGTGGCAAG GGCTACGTGT CATCACAGAG ATACATGTAT 121 CCACGTCAGC GTCTCTACAC CACCCAAGTT ACGATCCGGA ACCCAGACCC GAATTACACG 181 TATCCATATG CTGGCTGGCA CGAGGCATCT CCTTCGATAT GGTAGTCAAC AGATCCCCTA 241 ATGATAAAAT AAAAGTAAAA TCACTTTCAG TAAATTAAAT TATTTATCGC CTAGAATTTA 301 GAGAAAAATA GAAAAACAAA ATAGGTAGTA GTAATAAAAT ATTATCGATA ATTTGTCATA 361 GAATAGTTCA TTTGTGAGCT ACATTCAACT GCCAATACTT TTTCCGATGC TCTTCCGTCA 421 ACTTCAACGG CCATTTCCAC AATCGGCAAC TTATACTTCA CTTTTATAAC AAAGCGATTT 481 TGCTTATTCG GTCCCAGCGG CGATGGGCGG CGGCGGTCCC AGAAATTATT CGGCGAATCC 541 AAATGATTAC AAGCTTCTCG AAGAAGTCGG TTATGGAGCG AGTGCAACAG TTTATAGAGC 601 GATCTATCTT CCTTACAATG AAGTTATCGC AGTCAAGTGC TTGGATCTCG ATCGCTGTAA 661 CAGCAATCTG GATGACATAC GCAGGGAAGC TCAAACTATG AGTTTGATAG ACCATCCTAA 721 TGTAATAAAG TCATTCTGTT CATTTGTTGT TGAGAACTAC CTATGGGTGG TAATGCCCTT 781 CATGGCTGAG GGCTCTTGTC TACATCTCAT GAAAATAGCA TATCCAGATG GATTCGAAGA 841 ATCTGCTATT TGTTCTATGT TGAAGGAAAC TCTCAAGGCG TTGGAATATC TCCATCGACA 901 TGGGCACATA CATCGAGATG TGAAGGCTGG GAATATATTA CTGGACACTA ATGGGGCAGT 961 AAAGCTGGGC GATTTTGGTG TTTCCGCATG CATGTTTGAC AGTGGTGATA GACAGCGGTC 1021 TAGGAATACC TTTGTAGGAA CTCCGTGCTG GATGGCACCA GAAGTTCTGC AGCCTGGAAC 1081 TGGATATGAT TTTAAGGCTG ACATTTGGTC ATTTGGAATA ACTGCCCTGG AATTGGCTCA 1141 TGGTCATGCA CCATTTTCAA AGTACCCTCC AATGAAGGTA CTTCTGATGA CAATACAGAA 1201 TGCCCCTCCT GGACTTGATT ATGACAGAGA CAAAAAATTC TCTAAGTCAT TCAAGGAAAT 1261 GGTTGCGATG TGTTTGGTGA AAGATCAAAC TAAAAGGCCA ACTGCTGAGA AGTTGTTGAA 1321 GCATTCATTT TTCAAATATG CTAAGCCCCC AGAGCTTTCT GTAAAAAAAC TCTTTGCTGA 1381 CCTGCCACCA CTTTGGAATC GAGTTAAAGC TCTACAGCTT AAAGATGCTG CCCAACTAGC 1441 TTTGAAGAGA ATGCCTTCTT CCGAGCAGGA AGCATTATCA CAGAGTGAGT ACCAACGGGG 1501 AGTTAGCGCC TGGAACTTTG ATTTGGAGGA TTTAAAGCTT CAGGCTTCAC TGGTACAGGA 1561 CGATGATGAA ATACAAGAAA TTAAGGAAGA AGATGATACC ATCAAAGCTT ATATGAACTA 1621 CAAGGAGAAA TCTGTTGCCC TACAATATGC TGGAAAATCA ACCCCTAGAA AAGATTCTAT 1681 TGCCAGTGAG CAAGAAAGTA TTGGTGAAGT GCCAGTAGCT GAATACGAGA TCAAGAAGGG 1741 AAAAGATTTG GAGAGCAGTA CACCAGATTC TGATCATTGG GAGAAAAATG GACTGAAGAA 1801 GAATGCATCA AAAACAGAGT TGCCACCCCT AACCTCAGAC AGGGATGTCT TACCAGCCAA 1861 GAGTAGAACT CAAACACCAA AAGCTCGTCA AAGTCAGAGT GGACCACTTA TGGCTGGCGC 1921 TGTACTTAGT CACTCGGCAT CAGAAAGAGT TCGAAGCTCC GAAAGAAGTG AGATTGAAAA 1981 CCAACAACCA GGAGATAAAG CTCATCCAGT GCGAAGAGCA CCCAGCTTTA GTGGGCCTTT 2041 AATGCTTCCA AATCGAGCTT CAGGAAATAG TTTATCAGCT CCGATTAAAT CATCTGGGGG 2101 ATTCAAAGAT TCCTTGGATG ACAAGTCGAA GCCGAACTTG GTCCAAATAA AAGGCCGTTT 2161 CTCTGTAACA TCAGAAAATG TAGATCTTGT AAAGGATATT CCATTATGTA CAGTTCCTCG 2221 ACGATCTTCT CAAGGATCAC CACTTAGGAA GTCTGCTAGT GTTGGAGAAT GGCTGGTCGA 2281 ATCTAAACAA ATGCCACCCA GTCAACCGCC CAAGGAACTT GGCGTTAATA ATGTTCCTGC 2341 TTCAGTTCTC ATGCCTCACT TACAAAATCT CTTTCAACAG ACGTCAATTC AACAGGATCT 2401 CATTGTAAAT CTATTGAGTA GCTTGCAACT ATCTGAGGCA GGAGATTCTT CTCAAAATGG 2461 GAAGTTATCT CCCTTACAGC GCCCAGAGAG CAATGGAATT GTTGAAGCAG CTGTTTCTGA 2521 GAGGGAGAAG CTATTATTAG TCAAAATATC TGAGCTTCAG GCTAGGATGA TTAATTTGAC 2581 AGATGAGTTA ACTGCAGAAA AATTAAAATA CTGGCAGTTG CAACAGCGGT TAAATGCCAT 2641 GTCAAGTTGC GGAGAGGATG GGGACAGAAG AGAGTTGGAA TCCTGATGAC AATGATACGT 2701 TTCATATATA AACACCGTGT ATATTCAGGT TTAAGTATAG GAAGAGGCAG AGTGTAATTA 2761 TTCTTATGTC ACTGAATCAT GCACTTGTCC TTGTTGAATA GCTCGTGTGG GAAGAATCCA 2821 TCTCCAAGAA TCAATAAACA AAATAATGAG CGCATAGATA ATTTCTTCAT TTGTTTGACA 2881 AGTAGGTGCT GAAAACAAGC TTCTTGTGCA GATTCACGTC AAGGGATTAT TATTTTTATT 2941 TAGATATAGA AGATTGTGGA GGGAGGAAGG GCGGGCTCAG CGGGCAGAGA CTAGAGAGTG 3001 GGAGTGGTGG GTTCAATTTC GAATTTCATT TGTAGATCCT TAGTTTATGA TGTAGTCAAT 3061 ATTAAGGTGT AATTTTGTAT CATATATGAT GATCATGAGA TGTGTGTTCA ATAAAGCTTT 3121 TAGCTTCACA AGCATCCCTC AAGCCTAACA TATTTGTGGC CGTTGCCAAA TTGCCATTGC 3181 ATAAATGGAG AGATGGATCT GGTACTGTTG GACCCAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 122586 to 110339): Exon 1 121986 121317 ( 670 n); cDNA 1 670 ( 670 n); score: 0.999 Intron 1 121316 118490 (2827 n); Pd: 0.994 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 118489 118235 ( 255 n); cDNA 671 925 ( 255 n); score: 1.000 Intron 2 118234 118154 ( 81 n); Pd: 0.998 (s: 1.00), Pa: 0.966 (s: 1.00) Exon 3 118153 118029 ( 125 n); cDNA 926 1050 ( 125 n); score: 1.000 Intron 3 118028 117921 ( 108 n); Pd: 0.976 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 117920 117876 ( 45 n); cDNA 1051 1095 ( 45 n); score: 1.000 Intron 4 117875 117171 ( 705 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 117170 117089 ( 82 n); cDNA 1096 1177 ( 82 n); score: 1.000 Intron 5 117088 116995 ( 94 n); Pd: 0.981 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 6 116994 116926 ( 69 n); cDNA 1178 1246 ( 69 n); score: 1.000 Intron 6 116925 116693 ( 233 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 7 116692 116522 ( 171 n); cDNA 1247 1417 ( 171 n); score: 1.000 Intron 7 116521 116440 ( 82 n); Pd: 0.984 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 8 116439 116374 ( 66 n); cDNA 1418 1483 ( 66 n); score: 1.000 Intron 8 116373 115697 ( 677 n); Pd: 0.995 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 9 115696 115628 ( 69 n); cDNA 1484 1552 ( 69 n); score: 1.000 Intron 9 115627 115521 ( 107 n); Pd: 0.620 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 10 115520 115449 ( 72 n); cDNA 1553 1624 ( 72 n); score: 1.000 Intron 10 115448 115368 ( 81 n); Pd: 0.788 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 11 115367 115306 ( 62 n); cDNA 1625 1686 ( 62 n); score: 1.000 Intron 11 115305 114374 ( 932 n); Pd: 0.989 (s: 1.00), Pa: 0.584 (s: 1.00) Exon 12 114373 114095 ( 279 n); cDNA 1687 1965 ( 279 n); score: 1.000 Intron 12 114094 113632 ( 463 n); Pd: 0.932 (s: 1.00), Pa: 0.837 (s: 1.00) Exon 13 113631 113498 ( 134 n); cDNA 1966 2099 ( 134 n); score: 1.000 Intron 13 113497 113363 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 14 113362 113268 ( 95 n); cDNA 2100 2194 ( 95 n); score: 1.000 Intron 14 113267 113202 ( 66 n); Pd: 0.994 (s: 1.00), Pa: 0.419 (s: 0) Exon 15 113201 113163 ( 39 n); cDNA 2195 2233 ( 39 n); score: 1.000 Intron 15 113162 113077 ( 86 n); Pd: 0.878 (s: 0), Pa: 0.990 (s: 1.00) Exon 16 113076 113017 ( 60 n); cDNA 2234 2293 ( 60 n); score: 1.000 Intron 16 113016 112869 ( 148 n); Pd: 0.943 (s: 1.00), Pa: 0.783 (s: 1.00) Exon 17 112868 112767 ( 102 n); cDNA 2294 2395 ( 102 n); score: 1.000 Intron 17 112766 112581 ( 186 n); Pd: 0.000 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 18 112580 112529 ( 52 n); cDNA 2396 2447 ( 52 n); score: 1.000 Intron 18 112528 112423 ( 106 n); Pd: 0.417 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 19 112422 112370 ( 53 n); cDNA 2448 2500 ( 53 n); score: 1.000 Intron 19 112369 112213 ( 157 n); Pd: 0.992 (s: 1.00), Pa: 0.861 (s: 1.00) Exon 20 112212 112148 ( 65 n); cDNA 2501 2565 ( 65 n); score: 1.000 Intron 20 112147 112050 ( 98 n); Pd: 0.000 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 21 112049 111998 ( 52 n); cDNA 2566 2617 ( 52 n); score: 1.000 Intron 21 111997 111783 ( 215 n); Pd: 0.980 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 22 111782 111672 ( 111 n); cDNA 2618 2728 ( 111 n); score: 1.000 Intron 22 111671 111578 ( 94 n); Pd: 0.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 23 111577 111089 ( 489 n); cDNA 2729 3217 ( 489 n); score: 1.000 PPA cDNA 3218 3231 MATCH C08SLm0006K11.1- SGN-U317107+ 1.000 3217 0.996 C PGS_C08SLm0006K11.1-_SGN-U317107+ (121986 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111089) Alignment (genomic DNA sequence = upper lines): TCACAATTGC ACAAGTAATT TGAATTCTCA TTATTTTTTT TCTATTTGTT TGCTAGAAAT 121927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACAATTGC ACAAGTAATT TGAATTCTCA TTATTTTTTT TCTATTTGTT TGCTAGAAAT 60 AAATAAATAA ATAAATTGAC ACGTGGCAAG GGCTACGTGT CATCACAGAG ATACATGTAT 121867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAAATAA ATAAATTGAC ACGTGGCAAG GGCTACGTGT CATCACAGAG ATACATGTAT 120 CCACGTCAGC GTCTCTACAC CACCCAAGTT ACGATCCGGA ACCCAGACCC GAATTACACG 121807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGTCAGC GTCTCTACAC CACCCAAGTT ACGATCCGGA ACCCAGACCC GAATTACACG 180 TATCCATATG CTGGCTGGCA CGAGGCATCT CCTTCGATAT GGTAGTCAAC AGATCCCCTA 121747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCATATG CTGGCTGGCA CGAGGCATCT CCTTCGATAT GGTAGTCAAC AGATCCCCTA 240 ATGATAAAAT AAAAGTAAAA TCACTTTCAG TAAATTAAAT TATTTATCGC CTAGAATTTA 121687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATAAAAT AAAAGTAAAA TCACTTTCAG TAAATTAAAT TATTTATCGC CTAGAATTTA 300 GAGAAAAATA GAAAAACAAA ATAGGTAGTA GTAATAAAAT ATTATCGATA ATTTGTCATA 121627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAAATA GAAAAACAAA ATAGGTAGTA GTAATAAAAT ATTATCGATA ATTTGTCATA 360 GAATAGTTCA TTTGTGAGCT ACATTCAACT GCCAATACTT TCTCCGATGC TCTTCCGTCA 121567 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GAATAGTTCA TTTGTGAGCT ACATTCAACT GCCAATACTT TTTCCGATGC TCTTCCGTCA 420 ACTTCAACGG CCATTTCCAC AATCGGCAAC TTATACTTCA CTTTTATAAC AAAGCGATTT 121507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCAACGG CCATTTCCAC AATCGGCAAC TTATACTTCA CTTTTATAAC AAAGCGATTT 480 TGCTTATTCG GTCCCAGCGG CGATGGGCGG CGGCGGTCCC AGAAATTATT CGGCGAATCC 121447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTATTCG GTCCCAGCGG CGATGGGCGG CGGCGGTCCC AGAAATTATT CGGCGAATCC 540 AAATGATTAC AAGCTTCTCG AAGAAGTCGG TTATGGAGCG AGTGCAACAG TTTATAGAGC 121387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGATTAC AAGCTTCTCG AAGAAGTCGG TTATGGAGCG AGTGCAACAG TTTATAGAGC 600 GATCTATCTT CCTTACAATG AAGTTATCGC AGTCAAGTGC TTGGATCTCG ATCGCTGTAA 121327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTATCTT CCTTACAATG AAGTTATCGC AGTCAAGTGC TTGGATCTCG ATCGCTGTAA 660 CAGCAATCTG GTTTGTCTAT ATTTCTTCTG CTTTCTGCTC TCTCAGTTTA CTGATGGAAA 121267 |||||||||| CAGCAATCTG .......... .......... .......... .......... .......... 670 TAATTGACTT TGACTTGCGG ATTAATTGAT TTTTTGCTTT GTGATTTCTA GTATAGAATG 121207 .......... .......... .......... .......... .......... .......... 670 ATAGATGTTG TTTTAGTTTA TCTTTATGGA TATAGGTGGT TAGAATTGCA AATTGGCTAT 121147 .......... .......... .......... .......... .......... .......... 670 AGAGATCATA GAGTCGAAAG GACGTGGCTT CAATTGTGAT TTCCTTGTTT GCTTTGACTT 121087 .......... .......... .......... .......... .......... .......... 670 GTCATACGTC CGTGTTTTTA CTCCTTGTAT TTTGTCAGCA GTCAATATAA CAAGACTCAA 121027 .......... .......... .......... .......... .......... .......... 670 TTCTGGTGTC TCCAAGTGAT GTGATTGAAC AAAGTTACTG ATTTTACCCT GCGCACCCAA 120967 .......... .......... .......... .......... .......... .......... 670 AAGGGTAGCG GCTGTGGGTT TCTGTCATAA AAAAAAGTCA CTGATTTTAT ATTATTGTTG 120907 .......... .......... .......... .......... .......... .......... 670 ACCCTGTATT AATTTCACAC TGTTGGAGTT CATTGACGAG CCGAGGTTCT TCCCAAAACA 120847 .......... .......... .......... .......... .......... .......... 670 TCTTCTCTAC CTCTTAAGAG GTAGAGGTAA GATTTGCATA CACTCTACCC TTCTCATACC 120787 .......... .......... .......... .......... .......... .......... 670 CCACTTAGTT GGATTTCACT GGGTATGTCG CTGTTGTTGG TGTTCATTGT CGAGCCGAGT 120727 .......... .......... .......... .......... .......... .......... 670 GTCTTTCGAG ACAACCTCTC TACCTCCTAG AGGTAATGGT AAGGTTTACG TACATTCTAC 120667 .......... .......... .......... .......... .......... .......... 670 CCTCCCCGAC TCCATGGAGT CGGATTTCAC TGGGTACATC ATTGTTGTTG GTGCCAATTG 120607 .......... .......... .......... .......... .......... .......... 670 GCACTAAATG CGAATGCATG GATAGATATA GAATGAGAGT TAATTTGTGT GTAATCAGAT 120547 .......... .......... .......... .......... .......... .......... 670 GACAGAGTAT TATCAATTAA CTGGGTCAAG TCTGAAGTGA CAGCTGGTTT TACCTATCAG 120487 .......... .......... .......... .......... .......... .......... 670 TAAGGCAGTA ACAATAATCA GGTTTGGAAG CTTTAAATTC TTTTCTTGAA CTCCTTTTTG 120427 .......... .......... .......... .......... .......... .......... 670 ATTGCGCTTT TATGTCAAAG ATTCTGGTTT GCTAGGTGTT CCGCTGATGA TGTATGCATA 120367 .......... .......... .......... .......... .......... .......... 670 TGAAGTTCTC TTCAAGGGCA TAAAAAGAAC ATATAAGATC TTTGGCTATT TTGAAATGTG 120307 .......... .......... .......... .......... .......... .......... 670 ATTTGCTCCA CGTCTATGGC AATTCATTTC CTAATTTTAT TTTTCTTTGT TATTGTTGTT 120247 .......... .......... .......... .......... .......... .......... 670 GGGGTTTTTT TTAAAATAGA AATATAATAA TATGCGACAA AACTATTTAG CAGGGCAAAA 120187 .......... .......... .......... .......... .......... .......... 670 GAAAAGAAAA ACAATGCACA GTAATGTAAT TTTAGTTGGA TCAGATAACA AAGTATCTAA 120127 .......... .......... .......... .......... .......... .......... 670 AATGTAAGAG CGACTTGTAT TGAGCGATAG ATTGGTCGAC AATGAAATGG ACAACAAAAC 120067 .......... .......... .......... .......... .......... .......... 670 CAAAACTGTT TCGTAATTAC ATGTTTGCTG GACGTTATCT GAGAAGCCCG TGGATTCTCT 120007 .......... .......... .......... .......... .......... .......... 670 CTACAAGTAC CATCACATTA TAGTATTCAA CATAAAATCA CATTATTCCT GTCACCACTA 119947 .......... .......... .......... .......... .......... .......... 670 ATCCTATTTT ATCAGGGGAT CGGTAGCTAT CAAAATTCAA AGAAGTCCTT TTTTTTTGTT 119887 .......... .......... .......... .......... .......... .......... 670 AGCGGATTTC TCATTAAGTT CTTGTTTGAC TTGTCGCTAG TTGAACCCCC TGATATTCAT 119827 .......... .......... .......... .......... .......... .......... 670 CTGTTTGAAG TTATTATTTT CACTAATGAA TTCATCTTTG TTTCTTTCTT AATAAAGTAA 119767 .......... .......... .......... .......... .......... .......... 670 ATACAGATTA CGTAAGCAAT TAATAGACCC TTTACTATAA CCAGCCCGAT GAAAATATTT 119707 .......... .......... .......... .......... .......... .......... 670 GAGAGGAAGT ATCCCTGAAA GTAACCATGA CCATCTGTGC TTGGTCTATT TTCGACTTTT 119647 .......... .......... .......... .......... .......... .......... 670 CATGCCACCC AACATTTTTG TGCTTCTTTC CACTTGTGAT AATATAGTTC ATTTTGGAAG 119587 .......... .......... .......... .......... .......... .......... 670 GTTGATCGAT GCATTCAATG TAAGCACCCA CTAAAATTAT CAGGTCAGTA TTGTCTAAGG 119527 .......... .......... .......... .......... .......... .......... 670 CGAAAAACAT AGAAAACTGC CAAGTGTTTG CTGGTGTTTT AGCTTTTAAC TAAAGATAGA 119467 .......... .......... .......... .......... .......... .......... 670 AGCATGAGCT TTAGTGTAGT AAGACTTCGA CGAGAAAAAG TAACTTAATA TATAAAGAAC 119407 .......... .......... .......... .......... .......... .......... 670 AGTTATATTG GGCAAATAAG TGAAAAACTA CGATTACATA GAATATATAA AGTAGTCATA 119347 .......... .......... .......... .......... .......... .......... 670 TCAACAAGTT CAAATCTATT ACATAGAATA TTTAGGGACT AGCTTGTCAT ATTGCATAGA 119287 .......... .......... .......... .......... .......... .......... 670 ATAGTTAAGG AGTAAGGACT ACTTGTCATA TTGCAACTTT GACCTACAAT TTTGGATTGA 119227 .......... .......... .......... .......... .......... .......... 670 AAATTCTGAT AGGGGGAACC GGTTGTGGGT GTCGCTAGAT AATTTCATTT CCATGTTGTT 119167 .......... .......... .......... .......... .......... .......... 670 ACGAAACAAT ATATTTAGTT GGTGTATGTT CATTTCATGT CATAATAACC TGCGAAACTA 119107 .......... .......... .......... .......... .......... .......... 670 ATTACCTTTT AAACTTGCTC TACACTCCTA TCCAAAAGAA GGAAAGATCC TAATATATTC 119047 .......... .......... .......... .......... .......... .......... 670 TCTAATTGGG ATCTTATATT TTCACTTATT GATTGGTTAA TGTTTTCAGG GGGCCCCAAA 118987 .......... .......... .......... .......... .......... .......... 670 CCTCCTCCAC GTCATGAATT TAAGAGTAAC AAATTTAAAT ATCTATTAAT GAATCCCAAA 118927 .......... .......... .......... .......... .......... .......... 670 TTATTTGGTA TCAACTATAT GAATCCTCTT TGTTCGTTCA AGTCTATTCT GGCTTATTTT 118867 .......... .......... .......... .......... .......... .......... 670 TTAATTTCAT TTTAAAGATA AGTTGGAGGT TTTCTTACAA CAACATACCT AGTGAAATCC 118807 .......... .......... .......... .......... .......... .......... 670 CACTATCTCG TGGAAGTGAG ACCGTAACAA TTAAACCTTA ATTGCAGTAT TTGTATCTTT 118747 .......... .......... .......... .......... .......... .......... 670 TGAGTCCATA GTGTTCTGTT TTCAGCAAGG TTGCATGCAT TGTAAGAAAG TTTAAGCCTT 118687 .......... .......... .......... .......... .......... .......... 670 TTGAGAAAAT TATTCTCAAT GTGATTTTTG GTCCGTCAAC TCCTTTTTGA GGAGTAGAAG 118627 .......... .......... .......... .......... .......... .......... 670 TGTCAAGGAA GGCTTCTTAA TAGTTACAAA TGGAGGTGTT ATATTATAAG GACTGTATTT 118567 .......... .......... .......... .......... .......... .......... 670 TGAAATCTCA TTTTTATTTG GGTAGGATTA TGCTGCTATT TTGCTATAGG TATTTGAAAA 118507 .......... .......... .......... .......... .......... .......... 670 AAATTATTTC TCCACAGGAT GACATACGCA GGGAAGCTCA AACTATGAGT TTGATAGACC 118447 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GAT GACATACGCA GGGAAGCTCA AACTATGAGT TTGATAGACC 713 ATCCTAATGT AATAAAGTCA TTCTGTTCAT TTGTTGTTGA GAACTACCTA TGGGTGGTAA 118387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTAATGT AATAAAGTCA TTCTGTTCAT TTGTTGTTGA GAACTACCTA TGGGTGGTAA 773 TGCCCTTCAT GGCTGAGGGC TCTTGTCTAC ATCTCATGAA AATAGCATAT CCAGATGGAT 118327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCCTTCAT GGCTGAGGGC TCTTGTCTAC ATCTCATGAA AATAGCATAT CCAGATGGAT 833 TCGAAGAATC TGCTATTTGT TCTATGTTGA AGGAAACTCT CAAGGCGTTG GAATATCTCC 118267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAGAATC TGCTATTTGT TCTATGTTGA AGGAAACTCT CAAGGCGTTG GAATATCTCC 893 ATCGACATGG GCACATACAT CGAGATGTGA AGGTTTGTTA AAACCGATGT TCCCTTGTTT 118207 |||||||||| |||||||||| |||||||||| || ATCGACATGG GCACATACAT CGAGATGTGA AG........ .......... .......... 925 TTGACCCTCA AATTCTGATA TTTGTGGTTT CTCTACCACT TTTCTCATCC CAGGCTGGGA 118147 ||||||| .......... .......... .......... .......... .......... ...GCTGGGA 932 ATATATTACT GGACACTAAT GGGGCAGTAA AGCTGGGCGA TTTTGGTGTT TCCGCATGCA 118087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATATTACT GGACACTAAT GGGGCAGTAA AGCTGGGCGA TTTTGGTGTT TCCGCATGCA 992 TGTTTGACAG TGGTGATAGA CAGCGGTCTA GGAATACCTT TGTAGGAACT CCGTGCTGGT 118027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGTTTGACAG TGGTGATAGA CAGCGGTCTA GGAATACCTT TGTAGGAACT CCGTGCTG.. 1050 GAGCATATAG GCATCCTTTC AGTCACTTCC TATCTATAAT TGTTTCTATG CAAGTTTTTT 117967 .......... .......... .......... .......... .......... .......... 1050 CGTGCTCTAC ATGTCTATCA AGGCATGAAC TACTTTTATT TTGTAGGATG GCACCAGAAG 117907 |||| |||||||||| .......... .......... .......... .......... ......GATG GCACCAGAAG 1064 TTCTGCAGCC TGGAACTGGA TATGATTTTA AGTGAGTTTT CTCTGTCACG GTGTAAGATC 117847 |||||||||| |||||||||| |||||||||| | TTCTGCAGCC TGGAACTGGA TATGATTTTA A......... .......... .......... 1095 TTGATGGTTT CATATGTTAT GATGTACATT TTTCATTTAA TGGTTGACTG AGAGCTATTT 117787 .......... .......... .......... .......... .......... .......... 1095 GAGAAAGCTG AAGGCTGAAT TCTTTTTGAA ATTGTACCAT TGAATTACTT TACTGAACTT 117727 .......... .......... .......... .......... .......... .......... 1095 TTAGTGCTGA AAGGTATTAA GTTTATGCAT TTTAATCCTG TCACTGAATT CAAATATGAA 117667 .......... .......... .......... .......... .......... .......... 1095 TTATCCTCTT TAGTATTTTT TTGAAATTAA AACTGAGTGT ATTAATTTAT CACTAGATAA 117607 .......... .......... .......... .......... .......... .......... 1095 TGCTAGCTTC TTGGACTTAA TCAGGTTGTA ATGATGAAGC TTATATCATT CATGATATAA 117547 .......... .......... .......... .......... .......... .......... 1095 CATATTCCAA GCATTTTGTT CATGTAATAA GCAACTACGG TTGATTAGAA ACTTGTTCTC 117487 .......... .......... .......... .......... .......... .......... 1095 GGATATGTGG TCTTTCAAAC TTTAGTGATA ACTAAATTTT GGTTTACTTG AAATTGGTAA 117427 .......... .......... .......... .......... .......... .......... 1095 AGCAATTTAA GTGGCGCATG GAGTATTACA TGATTTTGAG TTTTTGTATA AATAAGTCTT 117367 .......... .......... .......... .......... .......... .......... 1095 ATTTTTTAAT GACTTAATCT GGTAATTTTA AGTGCTTAAA ACAGTTATCA AACACACTTT 117307 .......... .......... .......... .......... .......... .......... 1095 TAGATGAGAT TCTGAATATT GACATAAAGG TCTACATTTT CTTCTTGTCT AAGTATAATG 117247 .......... .......... .......... .......... .......... .......... 1095 CTTGTGTACT TATGCAGGGT CTATGAGAGT ATTTAGATTA TCAATGCTAT TGACTCTAAT 117187 .......... .......... .......... .......... .......... .......... 1095 TTTCTTCCTT CTACAGGGCT GACATTTGGT CATTTGGAAT AACTGCCCTG GAATTGGCTC 117127 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GGCT GACATTTGGT CATTTGGAAT AACTGCCCTG GAATTGGCTC 1139 ATGGTCATGC ACCATTTTCA AAGTACCCTC CAATGAAGGT ATCTATTCAT TTCCAAGAGG 117067 |||||||||| |||||||||| |||||||||| |||||||| ATGGTCATGC ACCATTTTCA AAGTACCCTC CAATGAAG.. .......... .......... 1177 GTACAACAAC AATACTTTAA CTTGGTGCTT GAGTATGCAT TATTTAAGTT ACCCTCTGTT 117007 .......... .......... .......... .......... .......... .......... 1177 CTCTCGCCAC AGGTACTTCT GATGACAATA CAGAATGCCC CTCCTGGACT TGATTATGAC 116947 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTACTTCT GATGACAATA CAGAATGCCC CTCCTGGACT TGATTATGAC 1225 AGAGACAAAA AATTCTCTAA GGTAGTAATT CCATTTTTGG AATTATTTCA TAAGTAGGTA 116887 |||||||||| |||||||||| | AGAGACAAAA AATTCTCTAA G......... .......... .......... .......... 1246 TTAAATACTG GTTTAATTCG ACTGTACACA CCCCCCCCCC CCCCCCAAAA AAAAAAAAAA 116827 .......... .......... .......... .......... .......... .......... 1246 AGAAAGAAAG AAAAGTTAGT CGTATCATTT GCATTTGTAC ATGGAGATAT TTGTATATGT 116767 .......... .......... .......... .......... .......... .......... 1246 TGATCTGCTA CGTGCTTCAA TCTTTATTTT GTATCATGTA CGAAGAACAA AATGGTTTTT 116707 .......... .......... .......... .......... .......... .......... 1246 ACTTGTCGTA ACAGTCATTC AAGGAAATGG TTGCGATGTG TTTGGTGAAA GATCAAACTA 116647 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....TCATTC AAGGAAATGG TTGCGATGTG TTTGGTGAAA GATCAAACTA 1292 AAAGGCCAAC TGCTGAGAAG TTGTTGAAGC ATTCATTTTT CAAATATGCT AAGCCCCCAG 116587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCCAAC TGCTGAGAAG TTGTTGAAGC ATTCATTTTT CAAATATGCT AAGCCCCCAG 1352 AGCTTTCTGT AAAAAAACTC TTTGCTGACC TGCCACCACT TTGGAATCGA GTTAAAGCTC 116527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTCTGT AAAAAAACTC TTTGCTGACC TGCCACCACT TTGGAATCGA GTTAAAGCTC 1412 TACAGGTATT TCATGGTATC GTTGTTCTAG GGTTGCTTAA TTTTCCTACT TATCATTGTT 116467 ||||| TACAG..... .......... .......... .......... .......... .......... 1417 TATTGCTGAT TGATGAAATT ATTGCAGCTT AAAGATGCTG CCCAACTAGC TTTGAAGAGA 116407 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......CTT AAAGATGCTG CCCAACTAGC TTTGAAGAGA 1450 ATGCCTTCTT CCGAGCAGGA AGCATTATCA CAGGTTTGTG ACAATTGTTT CATCAATGAC 116347 |||||||||| |||||||||| |||||||||| ||| ATGCCTTCTT CCGAGCAGGA AGCATTATCA CAG....... .......... .......... 1483 AGTGTTCATT AGTTTTGAAT GGTTATGCTA TCTAAGTTCC CGTGCATTTA TTTGTTCCAT 116287 .......... .......... .......... .......... .......... .......... 1483 TAGCTGTAAT GCTATTCTTC TGTGCGCAAA AATGCCATTC AACTCTTAAA TTAGGTTTCC 116227 .......... .......... .......... .......... .......... .......... 1483 ATCGTTAATG AGAAAATGTA ATCAGCCTCT CAATATGAAT TCCAGATCTT TGGATCTCCA 116167 .......... .......... .......... .......... .......... .......... 1483 TTTTTCTCTT TTGAACTTTG TGCATCCCAT GAAAATCAGA GATATCGAAT TGGTAGGTGT 116107 .......... .......... .......... .......... .......... .......... 1483 ATAATTGCTA TTTATAACTG TCTAATCCAT TCTGTTGGTT CTTTATATAC TTTTAAAGAA 116047 .......... .......... .......... .......... .......... .......... 1483 TGTTGTACTT TCTATTCCTG TCTTCTTTGG ACATGGGGAT AGGATGTTGA TGACGTTATC 115987 .......... .......... .......... .......... .......... .......... 1483 TCTGGTTTCA AAAGAAAAAG CAAAAAAGAT GGGTGACGAT GTACTCAGAA TGTTTTGATG 115927 .......... .......... .......... .......... .......... .......... 1483 TTTTTAGCCC AAAGGATTGC TTCTGATATT GTGTCTATGG CCCTGTTTAT ATCTAAAAGC 115867 .......... .......... .......... .......... .......... .......... 1483 AAGTAAATGC ATTTTCCATC ATCTTTTTCC CTTTTTGCAA GTGTTAATGT TGCTTACGCC 115807 .......... .......... .......... .......... .......... .......... 1483 AGTCCTTCTC TTTTCACGTT TCTTTATCTG TGGCATGTGA GTGTGAACAA GGTGTGAGTT 115747 .......... .......... .......... .......... .......... .......... 1483 TCCTTCTTCA AAATCTCCCA TCTGTTTTAA TATGTTGTTG TTCTTCACAG AGTGAGTACC 115687 |||||||||| .......... .......... .......... .......... .......... AGTGAGTACC 1493 AACGGGGAGT TAGCGCCTGG AACTTTGATT TGGAGGATTT AAAGCTTCAG GCTTCACTGG 115627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AACGGGGAGT TAGCGCCTGG AACTTTGATT TGGAGGATTT AAAGCTTCAG GCTTCACTG. 1552 TATATATATG AGAGGCGTCT CTTTATATCT GATAAAGACG CTCTTTCACT TTTGCTCCAT 115567 .......... .......... .......... .......... .......... .......... 1552 GAATTTTGCC ATCCTAAATT TAATAGTCTC TCGATTTCTG GGGCAGGTAC AGGACGATGA 115507 |||| |||||||||| .......... .......... .......... .......... ......GTAC AGGACGATGA 1566 TGAAATACAA GAAATTAAGG AAGAAGATGA TACCATCAAA GCTTATATGA ACTACAAGGT 115447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGAAATACAA GAAATTAAGG AAGAAGATGA TACCATCAAA GCTTATATGA ACTACAAG.. 1624 CTTTGCCAGT CTTTTCTGTG GTGCTTTAGT CAATTTTCAA GTTACTCAGA TCAGCCTTGA 115387 .......... .......... .......... .......... .......... .......... 1624 ACTGTTCTCC TATTTGCAGG AGAAATCTGT TGCCCTACAA TATGCTGGAA AATCAACCCC 115327 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G AGAAATCTGT TGCCCTACAA TATGCTGGAA AATCAACCCC 1665 TAGAAAAGAT TCTATTGCCA GGTATATTCT TTTTCATTTT GACCAGCCAC ATAGAGTTTG 115267 |||||||||| |||||||||| | TAGAAAAGAT TCTATTGCCA G......... .......... .......... .......... 1686 TCGTAGAAAG ATATCAAAAT GTAGCTGTTA GTAACTTAGT TTGCTAGAGG GAATGACGCC 115207 .......... .......... .......... .......... .......... .......... 1686 TTGTTTGAAT TTTGAACTTT TTTTAACTTG AGTTCCTTGA ACTTTTAGGT GTTAGAACTA 115147 .......... .......... .......... .......... .......... .......... 1686 GTTAAACCAT TTTGGGCCAA CTATTATACT CCCACCATTT ATTTTTCAAA AGTCATACTT 115087 .......... .......... .......... .......... .......... .......... 1686 TTTTGGTGCG GAGTTTAAGA TGTTAACTTG ACATATATAT TATATTGATG GAATAAATAT 115027 .......... .......... .......... .......... .......... .......... 1686 CAAATTAGTG ATTGTAAAAT TAGCATGATA CTGAAATATC ATGTTGAAGT TCAAAATTTG 114967 .......... .......... .......... .......... .......... .......... 1686 GATACTTGAA CAAATCTTTA TCATAGGAAG TTGTGAAAGA CTTATTGTAT TATGGGATGG 114907 .......... .......... .......... .......... .......... .......... 1686 TGTCAAACAT TTTGAATATC CCGCAATACT AAGCATGTCA TACAAATAGA GGTGCAGGCT 114847 .......... .......... .......... .......... .......... .......... 1686 GTATGTGCTT TCATGCTAAA TATTGTTCTT AGAGTCCATA TTGATGTACT TAAGTTAGTT 114787 .......... .......... .......... .......... .......... .......... 1686 TGTTCGTATT TACGTTAAGG GTAGAAGGGT AGAGGGGTGA TCCATTATCC ACTATGCATC 114727 .......... .......... .......... .......... .......... .......... 1686 AGTAACCTCA GGTGTTTTTC GGTTCCAAAA AGTAGTTGTC TTATACATAA TATCCTCTCT 114667 .......... .......... .......... .......... .......... .......... 1686 TCTGGAGCGT ATTTTTTTTC CTGTGGAATC AAGTGCAAAC CAAATATTCT CAATATAATA 114607 .......... .......... .......... .......... .......... .......... 1686 TCTTATCTTC TTCAGAAGAT ATAAAACATC AGCATATTTT GTGAGAACAG CTCTCTCCTG 114547 .......... .......... .......... .......... .......... .......... 1686 GGGAGAACAT TAATAATAGT TTTGTCATCA CCACGAAAAT ATGATAGTTT AGGTAATGCT 114487 .......... .......... .......... .......... .......... .......... 1686 TATGCATTGG CTTAGATTAT GTGAGCTTTT AGTTAAAATT TTATTTTTGG TCAAGCTATG 114427 .......... .......... .......... .......... .......... .......... 1686 CCTTGGATTA TTATCATCTC AATTTTAGTT TTCGTTGAAC ATCTTGTGCC CAGTGAGCAA 114367 ||||||| .......... .......... .......... .......... .......... ...TGAGCAA 1693 GAAAGTATTG GTGAAGTGCC AGTAGCTGAA TACGAGATCA AGAAGGGAAA AGATTTGGAG 114307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGTATTG GTGAAGTGCC AGTAGCTGAA TACGAGATCA AGAAGGGAAA AGATTTGGAG 1753 AGCAGTACAC CAGATTCTGA TCATTGGGAG AAAAATGGAC TGAAGAAGAA TGCATCAAAA 114247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGTACAC CAGATTCTGA TCATTGGGAG AAAAATGGAC TGAAGAAGAA TGCATCAAAA 1813 ACAGAGTTGC CACCCCTAAC CTCAGACAGG GATGTCTTAC CAGCCAAGAG TAGAACTCAA 114187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGAGTTGC CACCCCTAAC CTCAGACAGG GATGTCTTAC CAGCCAAGAG TAGAACTCAA 1873 ACACCAAAAG CTCGTCAAAG TCAGAGTGGA CCACTTATGG CTGGCGCTGT ACTTAGTCAC 114127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACCAAAAG CTCGTCAAAG TCAGAGTGGA CCACTTATGG CTGGCGCTGT ACTTAGTCAC 1933 TCGGCATCAG AAAGAGTTCG AAGCTCCGAA AGGTTCTGTA CGACTCATTG TATTCTTATT 114067 |||||||||| |||||||||| |||||||||| || TCGGCATCAG AAAGAGTTCG AAGCTCCGAA AG........ .......... .......... 1965 CTACTGTATC TCTTACATTG CGCCAAAGAA AAGCATTGCA CCGAAACTTT AACTAAGAAG 114007 .......... .......... .......... .......... .......... .......... 1965 CTTTATTACT TTTCAGGAAT CAAATTGCCT TTCTTTTCAT ATCATTTCAA CTGTAATAGG 113947 .......... .......... .......... .......... .......... .......... 1965 GTGAAAGGAA ATTGGTTAGA ACTGAATGCT CAAACTTGGT CTCTCTACTA ATATGGCAGT 113887 .......... .......... .......... .......... .......... .......... 1965 CCCCAATTTT TTAAAAATGT TTCTTCATTG GAACAAAACA GATTTCCACT GGAGAAGGAA 113827 .......... .......... .......... .......... .......... .......... 1965 TTCTCACAGG AATTTTGCTC TAAAGTTAGT GTGTTGGATT CATTTTATAG AGGCTAAAAT 113767 .......... .......... .......... .......... .......... .......... 1965 CAGTGTGTAA ATCATCCAAT AGCATTCTAA TGTAGTTCAT TGTGCTTTAT TTGACCATTT 113707 .......... .......... .......... .......... .......... .......... 1965 GCATATATGA CTGTTTATTT GGACACTGTT ATCAATTGAG AACTTTCAGT GAGGCAACTT 113647 .......... .......... .......... .......... .......... .......... 1965 ATGCTGCTCT TGCAGAAGTG AGATTGAAAA CCAACAACCA GGAGATAAAG CTCATCCAGT 113587 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....AAGTG AGATTGAAAA CCAACAACCA GGAGATAAAG CTCATCCAGT 2010 GCGAAGAGCA CCCAGCTTTA GTGGGCCTTT AATGCTTCCA AATCGAGCTT CAGGAAATAG 113527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAAGAGCA CCCAGCTTTA GTGGGCCTTT AATGCTTCCA AATCGAGCTT CAGGAAATAG 2070 TTTATCAGCT CCGATTAAAT CATCTGGGGG TATTAATGCT TTCAAGACAA GTTCATTTTT 113467 |||||||||| |||||||||| ||||||||| TTTATCAGCT CCGATTAAAT CATCTGGGG. .......... .......... .......... 2099 TGCTATTGTG TGTAAGACCC ACAATGGTTT ATAGAAAAAC TCTAGGTGGC ATGCTATTAA 113407 .......... .......... .......... .......... .......... .......... 2099 AGGCTGACTT CTCTTTGCAG TAATGATGAT TTTTATTTGT TCAGGATTCA AAGATTCCTT 113347 |||||| |||||||||| .......... .......... .......... .......... ....GATTCA AAGATTCCTT 2115 GGATGACAAG TCGAAGCCGA ACTTGGTCCA AATAAAAGGC CGTTTCTCTG TAACATCAGA 113287 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGACAAG TCGAAGCCGA ACTTGGTCCA AATAAAAGGC CGTTTCTCTG TAACATCAGA 2175 AAATGTAGAT CTTGTAAAGG TAAATCATAT TTTGTCATTT TCTTTCTTTT AGATCACTAT 113227 |||||||||| ||||||||| AAATGTAGAT CTTGTAAAG. .......... .......... .......... .......... 2194 TTGCTAACTT AAATATTTAT GTTAGGATAT TCCATTATGT ACAGTTCCTC GACGATCTTC 113167 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GATAT TCCATTATGT ACAGTTCCTC GACGATCTTC 2229 TCAAGTAAGT GGTTTGGTGT TGCCTTCTCA AAACAACTCA AGTATTTCAT TCCTGCTGTA 113107 |||| TCAA...... .......... .......... .......... .......... .......... 2233 TCTTTGACAC AAGATTTCTG TGATTCACAG GGATCACCAC TTAGGAAGTC TGCTAGTGTT 113047 |||||||||| |||||||||| |||||||||| .......... .......... .......... GGATCACCAC TTAGGAAGTC TGCTAGTGTT 2263 GGAGAATGGC TGGTCGAATC TAAACAAATG GTGTGTGTAT TGTCCCTTAC TTTACAGCTG 112987 |||||||||| |||||||||| |||||||||| GGAGAATGGC TGGTCGAATC TAAACAAATG .......... .......... .......... 2293 TAGTTAAGTC ATGTGATTAT GTTAAAACTT GAGCTCCACC CTGATGGTGC TATTTTGTCT 112927 .......... .......... .......... .......... .......... .......... 2293 TAACCAAGAG AAAAAGCAAA GAACTTGTTG TAATACTGCA TTTTTCATAA ATTTTCAGCC 112867 || .......... .......... .......... .......... .......... ........CC 2295 ACCCAGTCAA CCGCCCAAGG AACTTGGCGT TAATAATGTT CCTGCTTCAG TTCTCATGCC 112807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCAGTCAA CCGCCCAAGG AACTTGGCGT TAATAATGTT CCTGCTTCAG TTCTCATGCC 2355 TCACTTACAA AATCTCTTTC AACAGACGTC AATTCAACAG GTAAGGCATC AGTGTATGGT 112747 |||||||||| |||||||||| |||||||||| |||||||||| TCACTTACAA AATCTCTTTC AACAGACGTC AATTCAACAG .......... .......... 2395 AAAGATGCAA GATCCGTGTC CCCCCTCCCC CCCCACCCAC CCAAACGCGC ACACAGGAAA 112687 .......... .......... .......... .......... .......... .......... 2395 AAATACAGAA CAAAAACAAG AAAAGAAATG TTAAATTCAG GATTAACTAG TCCGTTTCTA 112627 .......... .......... .......... .......... .......... .......... 2395 TTTCTCGGTT GTTCTAACGC TTAATTTCTA CTGCATTTGT TATCAGGATC TCATTGTAAA 112567 |||| |||||||||| .......... .......... .......... .......... ......GATC TCATTGTAAA 2409 TCTATTGAGT AGCTTGCAAC TATCTGAGGC AGGAGATTGT AAGTATGAGG AAGAAATGTC 112507 |||||||||| |||||||||| |||||||||| |||||||| TCTATTGAGT AGCTTGCAAC TATCTGAGGC AGGAGATT.. .......... .......... 2447 TGATGTCCTT ATGTAAAGAA ATATGTTCTA CCAATAGTAA CATGGATTCA GATTTACTTA 112447 .......... .......... .......... .......... .......... .......... 2447 GATTGAAATT TCTTGTTCTT TCAGCTTCTC AAAATGGGAA GTTATCTCCC TTACAGCGCC 112387 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CTTCTC AAAATGGGAA GTTATCTCCC TTACAGCGCC 2483 CAGAGAGCAA TGGAATTGTA AGTACATGTC TTTGCTTTGA AAATTTGCTT AGCTTTAAGA 112327 |||||||||| ||||||| CAGAGAGCAA TGGAATT... .......... .......... .......... .......... 2500 CTTTGAGAAA GTGCAAATGT TTACATGGAG CTGTATAAAC ATGTCTCTTA TTGGGAACTT 112267 .......... .......... .......... .......... .......... .......... 2500 GTCTTTTATC ACATGGCAAC CATTCATTTT GATGAAGACA CTTCCGTTTT ACAGGTTGAA 112207 |||||| .......... .......... .......... .......... .......... ....GTTGAA 2506 GCAGCTGTTT CTGAGAGGGA GAAGCTATTA TTAGTCAAAA TATCTGAGCT TCAGGCTAGG 112147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCAGCTGTTT CTGAGAGGGA GAAGCTATTA TTAGTCAAAA TATCTGAGCT TCAGGCTAG. 2565 TCAGTCCACT GTGGACGCAA ATCAACTGTG GTGCATTTTT CTCACAGTTC TATGTGGGAC 112087 .......... .......... .......... .......... .......... .......... 2565 TTCTAATTGA AGAACTGATC TTCTCTCTAC TTTGCAGGAT GATTAATTTG ACAGATGAGT 112027 ||| |||||||||| |||||||||| .......... .......... .......... .......GAT GATTAATTTG ACAGATGAGT 2588 TAACTGCAGA AAAATTAAAA TACTGGCAGG TGAGTGCACA GTGGTTTCTT TGATGCAAAG 111967 |||||||||| |||||||||| ||||||||| TAACTGCAGA AAAATTAAAA TACTGGCAG. .......... .......... .......... 2617 GTCTATGTAA TATTAATTGA ATTGAAGTAA ATGAAAAGAT AGTAATAGAA GACCAACTGT 111907 .......... .......... .......... .......... .......... .......... 2617 GTGGAACTAC TTTGATGAGG TTTAAAAAAC TAGGTCCAAA GTTAAAACAA TTGAGGGGAT 111847 .......... .......... .......... .......... .......... .......... 2617 GAACTGGAAA GGTTTATTTA TAGCATCCAA GTGTGTTGCT AACAATGGTT TTTCACTGCT 111787 .......... .......... .......... .......... .......... .......... 2617 ACAGTTGCAA CAGCGGTTAA ATGCCATGTC AAGTTGCGGA GAGGATGGGG ACAGAAGAGA 111727 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TTGCAA CAGCGGTTAA ATGCCATGTC AAGTTGCGGA GAGGATGGGG ACAGAAGAGA 2673 GTTGGAATCC TGATGACAAT GATACGTTTC ATATATAAAC ACCGTGTATA TTCAGGTGTC 111667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTTGGAATCC TGATGACAAT GATACGTTTC ATATATAAAC ACCGTGTATA TTCAG..... 2728 TATTTGATGT TGCTAGAGCA GATAATTATG ATTTTTTTCA CACACATATA AATGCCTTGA 111607 .......... .......... .......... .......... .......... .......... 2728 ACAGACGTAA TTGTCGTTTG CTTTTGCAGG TTTAAGTATA GGAAGAGGCA GAGTGTAATT 111547 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTTAAGTATA GGAAGAGGCA GAGTGTAATT 2759 ATTCTTATGT CACTGAATCA TGCACTTGTC CTTGTTGAAT AGCTCGTGTG GGAAGAATCC 111487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTTATGT CACTGAATCA TGCACTTGTC CTTGTTGAAT AGCTCGTGTG GGAAGAATCC 2819 ATCTCCAAGA ATCAATAAAC AAAATAATGA GCGCATAGAT AATTTCTTCA TTTGTTTGAC 111427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCAAGA ATCAATAAAC AAAATAATGA GCGCATAGAT AATTTCTTCA TTTGTTTGAC 2879 AAGTAGGTGC TGAAAACAAG CTTCTTGTGC AGATTCACGT CAAGGGATTA TTATTTTTAT 111367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAGGTGC TGAAAACAAG CTTCTTGTGC AGATTCACGT CAAGGGATTA TTATTTTTAT 2939 TTAGATATAG AAGATTGTGG AGGGAGGAAG GGCGGGCTCA GCGGGCAGAG ACTAGAGAGT 111307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGATATAG AAGATTGTGG AGGGAGGAAG GGCGGGCTCA GCGGGCAGAG ACTAGAGAGT 2999 GGGAGTGGTG GGTTCAATTT CGAATTTCAT TTGTAGATCC TTAGTTTATG ATGTAGTCAA 111247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGTGGTG GGTTCAATTT CGAATTTCAT TTGTAGATCC TTAGTTTATG ATGTAGTCAA 3059 TATTAAGGTG TAATTTTGTA TCATATATGA TGATCATGAG ATGTGTGTTC AATAAAGCTT 111187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGGTG TAATTTTGTA TCATATATGA TGATCATGAG ATGTGTGTTC AATAAAGCTT 3119 TTAGCTTCAC AAGCATCCCT CAAGCCTAAC ATATTTGTGG CCGTTGCCAA ATTGCCATTG 111127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCTTCAC AAGCATCCCT CAAGCCTAAC ATATTTGTGG CCGTTGCCAA ATTGCCATTG 3179 CATAAATGGA GAGATGGATC TGGTACTGTT GGACCCAA 111089 |||||||||| |||||||||| |||||||||| |||||||| CATAAATGGA GAGATGGATC TGGTACTGTT GGACCCAA 3217 hqPGS_C08SLm0006K11.1-_SGN-U317107+ (121986 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111089) ******************************************************************************** EST sequence 10 -strand 1019 n (File: SGN-U335955-) 1 CTCGCGTGTA CAACGCCTGT TTTTTGAGGG AGGAAGTTTT TATTTTTTGC CAAAATTTTG 61 GGTTTCGGGG GAGGGCACTC CCCCTGGGGA AGCAAAAACA AAGGGGGGGC AATTTTTCTC 121 CCCAGTTTTA ATTGGGGCCT CTCAAATTGA AGGATGTTTT TTTTTTTTTT CTTTGGAGGG 181 ATAATTATTT TGACAGATTA GTTTACTGCA AGAAAAATTA AAAAATGGCC GGGTGAAGTG 241 CCCAGTGGTT CTTTTGATGC AAAGGTCTAT GTAATATTAA TTGAATTGAA GTAAATGAAA 301 AGATAGTAAT AGAAGACCAC CTGTGTGGAA CTACTTTGAT GAGGTTTAAA AAACTAGGTC 361 CAAAGTTAAA ACAATTGAGG GGATGAACTG GAAAGGTTTA TTTATAGCAT CCAAGTGTGT 421 TGCTAACAAT GGTTTTTCAC TGCTACAGTT GCAACAGCGG TTAAATGCCA TGTCAAGTTG 481 CGGAGAGGAT GGGGACAGAA GAGAGTTGGA ATCCTGATGA CAATGATACG TTTCATATAT 541 AAACACCGTG TATATTCAGG TGTCTATTTG ATGTTGCTAG AGCAGATAAT TATGATTTTT 601 TTCACACACA TATAAATGCC TTGAACAGAC GTAATTGTCG TTTGCTTTTG CAGGTTTAAG 661 TATAGGAAGA GGCAGAGTGT AATTATTCTT ATGTCACTGA ATCATGCACT TGTCCTTGTT 721 GAATAGCTCG TGTGGGAAGA ATCCATCTCC AAGAATCAAT AAACAAAATA ATGAGCGCAT 781 AGATAATTTC TTCATTTGTT TGACAAGTAG GTGCTGAAAA CAAGCTTCTT GTGCAGATTC 841 ACGTCAAGGG ATTATTATTT TTATTTAGAT ATAGAAGATT GTGGAGGGAG GAAGGGCGGG 901 CTCAGCGGGC AGAGACTAGA GCCTCGTGCC GAATTCCTGC AGCCCGGGGG ATCCACTAGT 961 TATAGAGCGG CGGCCGCCCC AGTGTGATCA GTCGTTATCA AACCNANNAC CCCTCCCCC Predicted gene structure (within gDNA segment 115708 to 109730): Exon 1 112199 111310 ( 890 n); cDNA 23 921 ( 899 n); score: 0.908 MATCH C08SLm0006K11.1- SGN-U335955- 0.908 890 0.873 C PGS_C08SLm0006K11.1-_SGN-U335955- (112199 111310) Alignment (genomic DNA sequence = upper lines): TTTCTGAGAG GGAGAAGCTA TTATTAGTCA AAATATCTGA GCTTCAGGCT AGGTCAGT-C 112141 ||| | ||| | || || || || | || |||| | || | ||| || ||| || | | TTTGAGGGAG GAAGTTTTTA TTTTTTGCCA AAAT-TTTGG GTTTCGGGGG AGGGCACTCC 81 CACTGTGGAC GC-AAATCAA CTGTGGTGC- ATTTTTCT-C ACAGTTCT-A TGTGGGACT- 112086 | ||| ||| || ||| ||| | || || |||||||| | ||||| | | | ||| || CCCTGGGGAA GCAAAAACAA AGGGGGGGCA ATTTTTCTCC CCAGTTTTAA TTGGGGCCTC 141 TCTAATTGAA -GAACTGATC TTCTCTCTAC TTTGCA-GGA TGATTAATTT GACAGATGAG 112028 || ||||||| || | | || | | | | |||| | ||| | |||| ||| ||||||| || TCAAATTGAA GGATGTTTTT TTTTTTTTTC TTTGGAGGGA TAATTATTTT GACAGATTAG 201 TTAACTGC-A GAAAAATTAA AATACTGGCA GGTG-AGTGC ACAGTGGTTT CTTTGATGCA 111970 || ||||| | |||||||||| || | | | |||| ||||| |||||||| ||||||||| TTTACTGCAA GAAAAATTAA AAAATGGCCG GGTGAAGTGC CCAGTGGTTC TTTTGATGCA 261 AAGGTCTATG TAATATTAAT TGAATTGAAG TAAATGAAAA GATAGTAATA GAAGACCAAC 111910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | AAGGTCTATG TAATATTAAT TGAATTGAAG TAAATGAAAA GATAGTAATA GAAGACCACC 321 TGTGTGGAAC TACTTTGATG AGGTTTAAAA AACTAGGTCC AAAGTTAAAA CAATTGAGGG 111850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTGGAAC TACTTTGATG AGGTTTAAAA AACTAGGTCC AAAGTTAAAA CAATTGAGGG 381 GATGAACTGG AAAGGTTTAT TTATAGCATC CAAGTGTGTT GCTAACAATG GTTTTTCACT 111790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAACTGG AAAGGTTTAT TTATAGCATC CAAGTGTGTT GCTAACAATG GTTTTTCACT 441 GCTACAGTTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG GGGACAGAAG 111730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACAGTTG CAACAGCGGT TAAATGCCAT GTCAAGTTGC GGAGAGGATG GGGACAGAAG 501 AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT ATATTCAGGT 111670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTGGAA TCCTGATGAC AATGATACGT TTCATATATA AACACCGTGT ATATTCAGGT 561 GTCTATTTGA TGTTGCTAGA GCAGATAATT ATGATTTTTT TCACACACAT ATAAATGCCT 111610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTATTTGA TGTTGCTAGA GCAGATAATT ATGATTTTTT TCACACACAT ATAAATGCCT 621 TGAACAGACG TAATTGTCGT TTGCTTTTGC AGGTTTAAGT ATAGGAAGAG GCAGAGTGTA 111550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACAGACG TAATTGTCGT TTGCTTTTGC AGGTTTAAGT ATAGGAAGAG GCAGAGTGTA 681 ATTATTCTTA TGTCACTGAA TCATGCACTT GTCCTTGTTG AATAGCTCGT GTGGGAAGAA 111490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTCTTA TGTCACTGAA TCATGCACTT GTCCTTGTTG AATAGCTCGT GTGGGAAGAA 741 TCCATCTCCA AGAATCAATA AACAAAATAA TGAGCGCATA GATAATTTCT TCATTTGTTT 111430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATCTCCA AGAATCAATA AACAAAATAA TGAGCGCATA GATAATTTCT TCATTTGTTT 801 GACAAGTAGG TGCTGAAAAC AAGCTTCTTG TGCAGATTCA CGTCAAGGGA TTATTATTTT 111370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGTAGG TGCTGAAAAC AAGCTTCTTG TGCAGATTCA CGTCAAGGGA TTATTATTTT 861 TATTTAGATA TAGAAGATTG TGGAGGGAGG AAGGGCGGGC TCAGCGGGCA GAGACTAGAG 111310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTAGATA TAGAAGATTG TGGAGGGAGG AAGGGCGGGC TCAGCGGGCA GAGACTAGAG 921 hqPGS_C08SLm0006K11.1-_SGN-U335955- (112199 111310) ******************************************************************************** EST sequence 25 +strand 1169 n (File: SGN-U317106+) 1 ATTATTTCTG AATAATATCG AACCAAAGCT AATAATTTCG TTTTCAAAAC ACTGAGAGAA 61 CTCTTAACTG GTTTTCCGAT CAGAGTTTTC TGGTTTACCG ATGACCGGCG GTCAGAAAAG 121 TTACTCGGTT AATCCGAGCG ATTACAAGCT TCTAGAAGAA GTTGGATATG GAGCAAGTGC 181 AACTGTTTAT AGAACGATCT ATATACCTTC TAATGAAGTT GTAGCAGTCA AGTGTTTGGA 241 TCTCGATCGA TGTAACAGCA ATCTGGATGA TATTCGTAGG GAAGCCCAAA CAATGAGTTT 301 AATTGGCCAT CCAAATTTAA TAAAAGCATT TTGTTCATTC GTTGTTGATC ACTACCTTTG 361 GGTGGTAATG CCCTTCATGG CTGAAGGTTC TTGTTTGCAC CTCATGAAGA TATCATATCC 421 AGATGGATTT GAGGAGGCTG TTATTGGTTC TATCTTGAAA GAAACTCTCA AGGCTTTGGA 481 ATATCTCCAT TCACATGGGC ACATTCATCG AGATGTTAAG GCTGGGAATA TATTGCTGGA 541 CACTAATGGG GTAGTAAAGC TCGCTGACTT TGGTGTCTCT GCATGCATGT TTGACAGTGG 601 TGACAGGCAG CGCTCTAGGA ATACATTTAC AGGAACTCCG TGCTGGATGG CACCAGAAGT 661 TTTGCAGCCT GGAACTGGAT ATGATTTCAA GGCTGACATT TGGTCGTTTG GAATAACTGC 721 CTTAGAGCTG GCTCATGGTC ATGCACCATT TTCGAAGTAC CCTCCAATGA AGGTTCTGCT 781 GATGACCATA AACAGTGCTC CTCCTGGACT TGACTATGAC CGTGATAAGA AATTCTCGAA 841 GTCTTTCAAG GAAATGGTTG CCATGTGCTT GGTGAAAGAT CAAACTAAAA GGCCAACTGC 901 TGAAAAATTG TTGAAGCACA TTTTTTTCAA AAAAGTTAAG CCTCCAGAGC TGTCTGTAAA 961 GAAACTGTTT GCCGACTTAC CATCGCTAGG GAGTCGAGTA AAAATGCTCC AGCTTAAAGA 1021 TGCTGCACAA CTAGCCTCGA AGAAAATGCC TTCATCCGAG CAAGAAGCAA TATCACAGAG 1081 TGAATACCAA CGAGGTGTTA GTGCCTGGAA CTTTGATCTG GAGGATTTGA AGTTTCAAGC 1141 TTCAATGGTG CAAGATGATG ACGAAATAC Predicted gene structure (within gDNA segment 123935 to 113361): Exon 1 121486 121317 ( 170 n); cDNA 99 265 ( 167 n); score: 0.835 Intron 1 121316 118490 (2827 n); Pd: 0.994 (s: 0.92), Pa: 0.997 (s: 0.82) Exon 2 118489 118235 ( 255 n); cDNA 266 520 ( 255 n); score: 0.855 Intron 2 118234 118154 ( 81 n); Pd: 0.998 (s: 0.90), Pa: 0.966 (s: 0.88) Exon 3 118153 118029 ( 125 n); cDNA 521 645 ( 125 n); score: 0.888 Intron 3 118028 117921 ( 108 n); Pd: 0.976 (s: 0.88), Pa: 0.998 (s: 0.96) Exon 4 117920 117876 ( 45 n); cDNA 646 690 ( 45 n); score: 0.956 Intron 4 117875 117171 ( 705 n); Pd: 0.960 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 5 117170 117089 ( 82 n); cDNA 691 772 ( 82 n); score: 0.927 Intron 5 117088 116995 ( 94 n); Pd: 0.981 (s: 0.92), Pa: 0.890 (s: 0.82) Exon 6 116994 116926 ( 69 n); cDNA 773 841 ( 69 n); score: 0.812 Intron 6 116925 116693 ( 233 n); Pd: 0.998 (s: 0.82), Pa: 0.974 (s: 0.94) Exon 7 116692 116522 ( 171 n); cDNA 842 1012 ( 171 n); score: 0.830 Intron 7 116521 116440 ( 82 n); Pd: 0.984 (s: 0.72), Pa: 0.999 (s: 0.90) Exon 8 116439 116374 ( 66 n); cDNA 1013 1078 ( 66 n); score: 0.894 Intron 8 116373 115697 ( 677 n); Pd: 0.995 (s: 0.88), Pa: 0.995 (s: 0.90) Exon 9 115696 115628 ( 69 n); cDNA 1079 1147 ( 69 n); score: 0.870 Intron 9 115627 115521 ( 107 n); Pd: 0.620 (s: 0.88), Pa: 0.975 (s: 0) Exon 10 115520 115499 ( 22 n); cDNA 1148 1169 ( 22 n); score: 0.818 MATCH C08SLm0006K11.1- SGN-U317106+ 0.858 1074 0.919 C PGS_C08SLm0006K11.1-_SGN-U317106+ (121486 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115499) Alignment (genomic DNA sequence = upper lines): CGATGGGCGG CGGCGGTCCC AGAAATTATT CGGCGAATCC AAATGATTAC AAGCTTCTCG 121427 ||||| | |||||||| | || ||| | ||| ||||| | |||||| |||||||| | CGATG-AC-- CGGCGGTCAG AAAAGTTACT CGGTTAATCC GAGCGATTAC AAGCTTCTAG 155 AAGAAGTCGG TTATGGAGCG AGTGCAACAG TTTATAGAGC GATCTATCTT CCTTACAATG 121367 ||||||| || |||||||| |||||||| | |||||||| | ||||||| | |||| |||| AAGAAGTTGG ATATGGAGCA AGTGCAACTG TTTATAGAAC GATCTATATA CCTTCTAATG 215 AAGTTATCGC AGTCAAGTGC TTGGATCTCG ATCGCTGTAA CAGCAATCTG GTTTGTCTAT 121307 ||||| | || ||||||||| |||||||||| |||| ||||| |||||||||| AAGTTGTAGC AGTCAAGTGT TTGGATCTCG ATCGATGTAA CAGCAATCTG .......... 265 ATTTCTTCTG CTTTCTGCTC TCTCAGTTTA CTGATGGAAA TAATTGACTT TGACTTGCGG 121247 .......... .......... .......... .......... .......... .......... 265 ATTAATTGAT TTTTTGCTTT GTGATTTCTA GTATAGAATG ATAGATGTTG TTTTAGTTTA 121187 .......... .......... .......... .......... .......... .......... 265 TCTTTATGGA TATAGGTGGT TAGAATTGCA AATTGGCTAT AGAGATCATA GAGTCGAAAG 121127 .......... .......... .......... .......... .......... .......... 265 GACGTGGCTT CAATTGTGAT TTCCTTGTTT GCTTTGACTT GTCATACGTC CGTGTTTTTA 121067 .......... .......... .......... .......... .......... .......... 265 CTCCTTGTAT TTTGTCAGCA GTCAATATAA CAAGACTCAA TTCTGGTGTC TCCAAGTGAT 121007 .......... .......... .......... .......... .......... .......... 265 GTGATTGAAC AAAGTTACTG ATTTTACCCT GCGCACCCAA AAGGGTAGCG GCTGTGGGTT 120947 .......... .......... .......... .......... .......... .......... 265 TCTGTCATAA AAAAAAGTCA CTGATTTTAT ATTATTGTTG ACCCTGTATT AATTTCACAC 120887 .......... .......... .......... .......... .......... .......... 265 TGTTGGAGTT CATTGACGAG CCGAGGTTCT TCCCAAAACA TCTTCTCTAC CTCTTAAGAG 120827 .......... .......... .......... .......... .......... .......... 265 GTAGAGGTAA GATTTGCATA CACTCTACCC TTCTCATACC CCACTTAGTT GGATTTCACT 120767 .......... .......... .......... .......... .......... .......... 265 GGGTATGTCG CTGTTGTTGG TGTTCATTGT CGAGCCGAGT GTCTTTCGAG ACAACCTCTC 120707 .......... .......... .......... .......... .......... .......... 265 TACCTCCTAG AGGTAATGGT AAGGTTTACG TACATTCTAC CCTCCCCGAC TCCATGGAGT 120647 .......... .......... .......... .......... .......... .......... 265 CGGATTTCAC TGGGTACATC ATTGTTGTTG GTGCCAATTG GCACTAAATG CGAATGCATG 120587 .......... .......... .......... .......... .......... .......... 265 GATAGATATA GAATGAGAGT TAATTTGTGT GTAATCAGAT GACAGAGTAT TATCAATTAA 120527 .......... .......... .......... .......... .......... .......... 265 CTGGGTCAAG TCTGAAGTGA CAGCTGGTTT TACCTATCAG TAAGGCAGTA ACAATAATCA 120467 .......... .......... .......... .......... .......... .......... 265 GGTTTGGAAG CTTTAAATTC TTTTCTTGAA CTCCTTTTTG ATTGCGCTTT TATGTCAAAG 120407 .......... .......... .......... .......... .......... .......... 265 ATTCTGGTTT GCTAGGTGTT CCGCTGATGA TGTATGCATA TGAAGTTCTC TTCAAGGGCA 120347 .......... .......... .......... .......... .......... .......... 265 TAAAAAGAAC ATATAAGATC TTTGGCTATT TTGAAATGTG ATTTGCTCCA CGTCTATGGC 120287 .......... .......... .......... .......... .......... .......... 265 AATTCATTTC CTAATTTTAT TTTTCTTTGT TATTGTTGTT GGGGTTTTTT TTAAAATAGA 120227 .......... .......... .......... .......... .......... .......... 265 AATATAATAA TATGCGACAA AACTATTTAG CAGGGCAAAA GAAAAGAAAA ACAATGCACA 120167 .......... .......... .......... .......... .......... .......... 265 GTAATGTAAT TTTAGTTGGA TCAGATAACA AAGTATCTAA AATGTAAGAG CGACTTGTAT 120107 .......... .......... .......... .......... .......... .......... 265 TGAGCGATAG ATTGGTCGAC AATGAAATGG ACAACAAAAC CAAAACTGTT TCGTAATTAC 120047 .......... .......... .......... .......... .......... .......... 265 ATGTTTGCTG GACGTTATCT GAGAAGCCCG TGGATTCTCT CTACAAGTAC CATCACATTA 119987 .......... .......... .......... .......... .......... .......... 265 TAGTATTCAA CATAAAATCA CATTATTCCT GTCACCACTA ATCCTATTTT ATCAGGGGAT 119927 .......... .......... .......... .......... .......... .......... 265 CGGTAGCTAT CAAAATTCAA AGAAGTCCTT TTTTTTTGTT AGCGGATTTC TCATTAAGTT 119867 .......... .......... .......... .......... .......... .......... 265 CTTGTTTGAC TTGTCGCTAG TTGAACCCCC TGATATTCAT CTGTTTGAAG TTATTATTTT 119807 .......... .......... .......... .......... .......... .......... 265 CACTAATGAA TTCATCTTTG TTTCTTTCTT AATAAAGTAA ATACAGATTA CGTAAGCAAT 119747 .......... .......... .......... .......... .......... .......... 265 TAATAGACCC TTTACTATAA CCAGCCCGAT GAAAATATTT GAGAGGAAGT ATCCCTGAAA 119687 .......... .......... .......... .......... .......... .......... 265 GTAACCATGA CCATCTGTGC TTGGTCTATT TTCGACTTTT CATGCCACCC AACATTTTTG 119627 .......... .......... .......... .......... .......... .......... 265 TGCTTCTTTC CACTTGTGAT AATATAGTTC ATTTTGGAAG GTTGATCGAT GCATTCAATG 119567 .......... .......... .......... .......... .......... .......... 265 TAAGCACCCA CTAAAATTAT CAGGTCAGTA TTGTCTAAGG CGAAAAACAT AGAAAACTGC 119507 .......... .......... .......... .......... .......... .......... 265 CAAGTGTTTG CTGGTGTTTT AGCTTTTAAC TAAAGATAGA AGCATGAGCT TTAGTGTAGT 119447 .......... .......... .......... .......... .......... .......... 265 AAGACTTCGA CGAGAAAAAG TAACTTAATA TATAAAGAAC AGTTATATTG GGCAAATAAG 119387 .......... .......... .......... .......... .......... .......... 265 TGAAAAACTA CGATTACATA GAATATATAA AGTAGTCATA TCAACAAGTT CAAATCTATT 119327 .......... .......... .......... .......... .......... .......... 265 ACATAGAATA TTTAGGGACT AGCTTGTCAT ATTGCATAGA ATAGTTAAGG AGTAAGGACT 119267 .......... .......... .......... .......... .......... .......... 265 ACTTGTCATA TTGCAACTTT GACCTACAAT TTTGGATTGA AAATTCTGAT AGGGGGAACC 119207 .......... .......... .......... .......... .......... .......... 265 GGTTGTGGGT GTCGCTAGAT AATTTCATTT CCATGTTGTT ACGAAACAAT ATATTTAGTT 119147 .......... .......... .......... .......... .......... .......... 265 GGTGTATGTT CATTTCATGT CATAATAACC TGCGAAACTA ATTACCTTTT AAACTTGCTC 119087 .......... .......... .......... .......... .......... .......... 265 TACACTCCTA TCCAAAAGAA GGAAAGATCC TAATATATTC TCTAATTGGG ATCTTATATT 119027 .......... .......... .......... .......... .......... .......... 265 TTCACTTATT GATTGGTTAA TGTTTTCAGG GGGCCCCAAA CCTCCTCCAC GTCATGAATT 118967 .......... .......... .......... .......... .......... .......... 265 TAAGAGTAAC AAATTTAAAT ATCTATTAAT GAATCCCAAA TTATTTGGTA TCAACTATAT 118907 .......... .......... .......... .......... .......... .......... 265 GAATCCTCTT TGTTCGTTCA AGTCTATTCT GGCTTATTTT TTAATTTCAT TTTAAAGATA 118847 .......... .......... .......... .......... .......... .......... 265 AGTTGGAGGT TTTCTTACAA CAACATACCT AGTGAAATCC CACTATCTCG TGGAAGTGAG 118787 .......... .......... .......... .......... .......... .......... 265 ACCGTAACAA TTAAACCTTA ATTGCAGTAT TTGTATCTTT TGAGTCCATA GTGTTCTGTT 118727 .......... .......... .......... .......... .......... .......... 265 TTCAGCAAGG TTGCATGCAT TGTAAGAAAG TTTAAGCCTT TTGAGAAAAT TATTCTCAAT 118667 .......... .......... .......... .......... .......... .......... 265 GTGATTTTTG GTCCGTCAAC TCCTTTTTGA GGAGTAGAAG TGTCAAGGAA GGCTTCTTAA 118607 .......... .......... .......... .......... .......... .......... 265 TAGTTACAAA TGGAGGTGTT ATATTATAAG GACTGTATTT TGAAATCTCA TTTTTATTTG 118547 .......... .......... .......... .......... .......... .......... 265 GGTAGGATTA TGCTGCTATT TTGCTATAGG TATTTGAAAA AAATTATTTC TCCACAGGAT 118487 ||| .......... .......... .......... .......... .......... .......GAT 268 GACATACGCA GGGAAGCTCA AACTATGAGT TTGATAGACC ATCCTAATGT AATAAAGTCA 118427 || || || | ||||||| || ||| |||||| || || | || |||| ||| | |||||| || GATATTCGTA GGGAAGCCCA AACAATGAGT TTAATTGGCC ATCCAAATTT AATAAAAGCA 328 TTCTGTTCAT TTGTTGTTGA GAACTACCTA TGGGTGGTAA TGCCCTTCAT GGCTGAGGGC 118367 || ||||||| | |||||||| ||||||| |||||||||| |||||||||| |||||| || TTTTGTTCAT TCGTTGTTGA TCACTACCTT TGGGTGGTAA TGCCCTTCAT GGCTGAAGGT 388 TCTTGTCTAC ATCTCATGAA AATAGCATAT CCAGATGGAT TCGAAGAATC TGCTATTTGT 118307 |||||| | | | |||||||| ||| ||||| |||||||||| | || || | || |||| || TCTTGTTTGC ACCTCATGAA GATATCATAT CCAGATGGAT TTGAGGAGGC TGTTATTGGT 448 TCTATGTTGA AGGAAACTCT CAAGGCGTTG GAATATCTCC ATCGACATGG GCACATACAT 118247 ||||| |||| | |||||||| |||||| ||| |||||||||| || |||||| |||||| ||| TCTATCTTGA AAGAAACTCT CAAGGCTTTG GAATATCTCC ATTCACATGG GCACATTCAT 508 CGAGATGTGA AGGTTTGTTA AAACCGATGT TCCCTTGTTT TTGACCCTCA AATTCTGATA 118187 |||||||| | || CGAGATGTTA AG........ .......... .......... .......... .......... 520 TTTGTGGTTT CTCTACCACT TTTCTCATCC CAGGCTGGGA ATATATTACT GGACACTAAT 118127 ||||||| ||||||| || |||||||||| .......... .......... .......... ...GCTGGGA ATATATTGCT GGACACTAAT 547 GGGGCAGTAA AGCTGGGCGA TTTTGGTGTT TCCGCATGCA TGTTTGACAG TGGTGATAGA 118067 |||| ||||| |||| | || |||||||| || ||||||| |||||||||| |||||| || GGGGTAGTAA AGCTCGCTGA CTTTGGTGTC TCTGCATGCA TGTTTGACAG TGGTGACAGG 607 CAGCGGTCTA GGAATACCTT TGTAGGAACT CCGTGCTGGT GAGCATATAG GCATCCTTTC 118007 ||||| |||| ||||||| || | ||||||| |||||||| CAGCGCTCTA GGAATACATT TACAGGAACT CCGTGCTG.. .......... .......... 645 AGTCACTTCC TATCTATAAT TGTTTCTATG CAAGTTTTTT CGTGCTCTAC ATGTCTATCA 117947 .......... .......... .......... .......... .......... .......... 645 AGGCATGAAC TACTTTTATT TTGTAGGATG GCACCAGAAG TTCTGCAGCC TGGAACTGGA 117887 |||| |||||||||| || ||||||| |||||||||| .......... .......... ......GATG GCACCAGAAG TTTTGCAGCC TGGAACTGGA 679 TATGATTTTA AGTGAGTTTT CTCTGTCACG GTGTAAGATC TTGATGGTTT CATATGTTAT 117827 |||||||| | | TATGATTTCA A......... .......... .......... .......... .......... 690 GATGTACATT TTTCATTTAA TGGTTGACTG AGAGCTATTT GAGAAAGCTG AAGGCTGAAT 117767 .......... .......... .......... .......... .......... .......... 690 TCTTTTTGAA ATTGTACCAT TGAATTACTT TACTGAACTT TTAGTGCTGA AAGGTATTAA 117707 .......... .......... .......... .......... .......... .......... 690 GTTTATGCAT TTTAATCCTG TCACTGAATT CAAATATGAA TTATCCTCTT TAGTATTTTT 117647 .......... .......... .......... .......... .......... .......... 690 TTGAAATTAA AACTGAGTGT ATTAATTTAT CACTAGATAA TGCTAGCTTC TTGGACTTAA 117587 .......... .......... .......... .......... .......... .......... 690 TCAGGTTGTA ATGATGAAGC TTATATCATT CATGATATAA CATATTCCAA GCATTTTGTT 117527 .......... .......... .......... .......... .......... .......... 690 CATGTAATAA GCAACTACGG TTGATTAGAA ACTTGTTCTC GGATATGTGG TCTTTCAAAC 117467 .......... .......... .......... .......... .......... .......... 690 TTTAGTGATA ACTAAATTTT GGTTTACTTG AAATTGGTAA AGCAATTTAA GTGGCGCATG 117407 .......... .......... .......... .......... .......... .......... 690 GAGTATTACA TGATTTTGAG TTTTTGTATA AATAAGTCTT ATTTTTTAAT GACTTAATCT 117347 .......... .......... .......... .......... .......... .......... 690 GGTAATTTTA AGTGCTTAAA ACAGTTATCA AACACACTTT TAGATGAGAT TCTGAATATT 117287 .......... .......... .......... .......... .......... .......... 690 GACATAAAGG TCTACATTTT CTTCTTGTCT AAGTATAATG CTTGTGTACT TATGCAGGGT 117227 .......... .......... .......... .......... .......... .......... 690 CTATGAGAGT ATTTAGATTA TCAATGCTAT TGACTCTAAT TTTCTTCCTT CTACAGGGCT 117167 |||| .......... .......... .......... .......... .......... ......GGCT 694 GACATTTGGT CATTTGGAAT AACTGCCCTG GAATTGGCTC ATGGTCATGC ACCATTTTCA 117107 |||||||||| | |||||||| ||||||| | || |||||| |||||||||| ||||||||| GACATTTGGT CGTTTGGAAT AACTGCCTTA GAGCTGGCTC ATGGTCATGC ACCATTTTCG 754 AAGTACCCTC CAATGAAGGT ATCTATTCAT TTCCAAGAGG GTACAACAAC AATACTTTAA 117047 |||||||||| |||||||| AAGTACCCTC CAATGAAG.. .......... .......... .......... .......... 772 CTTGGTGCTT GAGTATGCAT TATTTAAGTT ACCCTCTGTT CTCTCGCCAC AGGTACTTCT 116987 || || || .......... .......... .......... .......... .......... ..GTTCTGCT 780 GATGACAATA CAGAATGCCC CTCCTGGACT TGATTATGAC AGAGACAAAA AATTCTCTAA 116927 |||||| ||| | | ||| | |||||||||| ||| |||||| | || || | ||||||| || GATGACCATA AACAGTGCTC CTCCTGGACT TGACTATGAC CGTGATAAGA AATTCTCGAA 840 GGTAGTAATT CCATTTTTGG AATTATTTCA TAAGTAGGTA TTAAATACTG GTTTAATTCG 116867 | G......... .......... .......... .......... .......... .......... 841 ACTGTACACA CCCCCCCCCC CCCCCCAAAA AAAAAAAAAA AGAAAGAAAG AAAAGTTAGT 116807 .......... .......... .......... .......... .......... .......... 841 CGTATCATTT GCATTTGTAC ATGGAGATAT TTGTATATGT TGATCTGCTA CGTGCTTCAA 116747 .......... .......... .......... .......... .......... .......... 841 TCTTTATTTT GTATCATGTA CGAAGAACAA AATGGTTTTT ACTTGTCGTA ACAGTCATTC 116687 || ||| .......... .......... .......... .......... .......... ....TCTTTC 847 AAGGAAATGG TTGCGATGTG TTTGGTGAAA GATCAAACTA AAAGGCCAAC TGCTGAGAAG 116627 |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| |||||| || AAGGAAATGG TTGCCATGTG CTTGGTGAAA GATCAAACTA AAAGGCCAAC TGCTGAAAAA 907 TTGTTGAAGC ATTCATTTTT CAAATATGCT AAGCCCCCAG AGCTTTCTGT AAAAAAACTC 116567 |||||||||| | ||||| |||| | | | ||||| |||| |||| ||||| ||| ||||| TTGTTGAAGC ACATTTTTTT CAAAAAAGTT AAGCCTCCAG AGCTGTCTGT AAAGAAACTG 967 TTTGCTGACC TGCCACCACT TTGGAATCGA GTTAAAGCTC TACAGGTATT TCATGGTATC 116507 ||||| ||| | ||| | || ||| |||| || ||| | | ||| TTTGCCGACT TACCATCGCT AGGGAGTCGA GTAAAAATGC TCCAG..... .......... 1012 GTTGTTCTAG GGTTGCTTAA TTTTCCTACT TATCATTGTT TATTGCTGAT TGATGAAATT 116447 .......... .......... .......... .......... .......... .......... 1012 ATTGCAGCTT AAAGATGCTG CCCAACTAGC TTTGAAGAGA ATGCCTTCTT CCGAGCAGGA 116387 ||| |||||||||| | |||||||| | ||||| | |||||||| | ||||||| || .......CTT AAAGATGCTG CACAACTAGC CTCGAAGAAA ATGCCTTCAT CCGAGCAAGA 1065 AGCATTATCA CAGGTTTGTG ACAATTGTTT CATCAATGAC AGTGTTCATT AGTTTTGAAT 116327 |||| ||||| ||| AGCAATATCA CAG....... .......... .......... .......... .......... 1078 GGTTATGCTA TCTAAGTTCC CGTGCATTTA TTTGTTCCAT TAGCTGTAAT GCTATTCTTC 116267 .......... .......... .......... .......... .......... .......... 1078 TGTGCGCAAA AATGCCATTC AACTCTTAAA TTAGGTTTCC ATCGTTAATG AGAAAATGTA 116207 .......... .......... .......... .......... .......... .......... 1078 ATCAGCCTCT CAATATGAAT TCCAGATCTT TGGATCTCCA TTTTTCTCTT TTGAACTTTG 116147 .......... .......... .......... .......... .......... .......... 1078 TGCATCCCAT GAAAATCAGA GATATCGAAT TGGTAGGTGT ATAATTGCTA TTTATAACTG 116087 .......... .......... .......... .......... .......... .......... 1078 TCTAATCCAT TCTGTTGGTT CTTTATATAC TTTTAAAGAA TGTTGTACTT TCTATTCCTG 116027 .......... .......... .......... .......... .......... .......... 1078 TCTTCTTTGG ACATGGGGAT AGGATGTTGA TGACGTTATC TCTGGTTTCA AAAGAAAAAG 115967 .......... .......... .......... .......... .......... .......... 1078 CAAAAAAGAT GGGTGACGAT GTACTCAGAA TGTTTTGATG TTTTTAGCCC AAAGGATTGC 115907 .......... .......... .......... .......... .......... .......... 1078 TTCTGATATT GTGTCTATGG CCCTGTTTAT ATCTAAAAGC AAGTAAATGC ATTTTCCATC 115847 .......... .......... .......... .......... .......... .......... 1078 ATCTTTTTCC CTTTTTGCAA GTGTTAATGT TGCTTACGCC AGTCCTTCTC TTTTCACGTT 115787 .......... .......... .......... .......... .......... .......... 1078 TCTTTATCTG TGGCATGTGA GTGTGAACAA GGTGTGAGTT TCCTTCTTCA AAATCTCCCA 115727 .......... .......... .......... .......... .......... .......... 1078 TCTGTTTTAA TATGTTGTTG TTCTTCACAG AGTGAGTACC AACGGGGAGT TAGCGCCTGG 115667 ||||| |||| |||| || || ||| |||||| .......... .......... .......... AGTGAATACC AACGAGGTGT TAGTGCCTGG 1108 AACTTTGATT TGGAGGATTT AAAGCTTCAG GCTTCACTGG TATATATATG AGAGGCGTCT 115607 ||||||||| |||||||||| ||| |||| |||||| || AACTTTGATC TGGAGGATTT GAAGTTTCAA GCTTCAATG. .......... .......... 1147 CTTTATATCT GATAAAGACG CTCTTTCACT TTTGCTCCAT GAATTTTGCC ATCCTAAATT 115547 .......... .......... .......... .......... .......... .......... 1147 TAATAGTCTC TCGATTTCTG GGGCAGGTAC AGGACGATGA TGAAATAC 115499 || | | || ||||| ||||||| .......... .......... ......GTGC AAGATGATGA CGAAATAC 1169 hqPGS_C08SLm0006K11.1-_SGN-U317106+ (121486 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115499) ******************************************************************************** EST sequence 23 +strand 933 n (File: SGN-U324441+) 1 TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 61 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 121 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 181 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 241 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 301 ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 361 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 421 GTGTGTGTGG CGGTGGAAGG ACGCACCGCC GCGCCGCCGG AAGTGATTAC TGAGAAGGTG 481 GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 541 CAAAGAGAAG TTGAAAATGA CGAGTCTACT TGTTGCTGCT CGGAGTGTGA AGGTGAAGAA 601 GACGATTCGG ACGACACCGA TACGGCGGAG GGAGTTGGGT GGGCAGTAGA TGTAGGGATA 661 TGGGTGATGT GCCTTGGGGT GGGGGTGGGC TATTTGGTCT CTAGAGCTTC TTCAAAGAGC 721 TTAAGGAGGA GGAGGAGATT CCTATAAAAA AACTCATTGT TTTGGTTAAA TAATCCTGCG 781 TAGACATTTT TTCCACCACT TATACCTTAT AATTTTATTA TTCTGCTAGT AATTTCTAAC 841 AAATAGGATA TAGAAAGTTT TGTTTTCTGC AAAGTATTAC ATTTAGGCTC GTTTAATCCA 901 AAAATAAATT ATTCTAGAAT TGTTAAAAAA AAA Predicted gene structure (within gDNA segment 123963 to 121749): Exon 1 123363 122440 ( 924 n); cDNA 1 924 ( 924 n); score: 1.000 Intron 1 122439 121931 ( 509 n); Pd: 0.000 (s: 1.00), Pa: 0.902 (s: 0) Exon 2 121930 121924 ( 7 n); cDNA 925 931 ( 7 n); score: 0.857 MATCH C08SLm0006K11.1- SGN-U324441+ 1.000 931 0.998 C PGS_C08SLm0006K11.1-_SGN-U324441+ (123363 122440,121930 121924) Alignment (genomic DNA sequence = upper lines): TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 123304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATCAAC TAGCAAAAAT GTGTAAAGGA TTTCAACCAA ACGAGAAAGA TCGCCTGAAA 60 ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 123244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGGCT TTTATCTCCA TTTATCACCG ACTGAAACCG TCTCACCGGA TTCTCTAACT 120 CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 123184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCATTATC TCCCTAGAAT TAGTGAGAGT CCATTAGAGA TTAATGATTC CAAAATCCGA 180 TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 123124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATTCCC CCGGTTTCGT TACGCTTTAC CGGGTAGTAT CAGCTGACAA TGTAACAACG 240 AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 123064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTGTTA TTTACGGAAG CAGGGACAGA GTTAAAGCCA GTGAAGGAGT AAAATTTGAA 300 ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 123004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTCATGG CTGATGTAAA GCTCATAAAA GGTATTTTCA TGAAAGATCT ACACAACTGG 360 AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 122944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCGATT GCAAGTGCGC TTTGTTGGAA AACGACGATT TAAAAGTGAA AGGAGCAGAG 420 GTGTGTGTGG CGGTGGAAGG ACGCACCGCC GCGCCGCCGG AAGTGATTAC TGAGAAGGTG 122884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTGTGTGG CGGTGGAAGG ACGCACCGCC GCGCCGCCGG AAGTGATTAC TGAGAAGGTG 480 GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 122824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGACGG TGAGATCACG GCGGAGGAGC TGTTTTCAGA AGCTGGAGGA GATTCCTGAA 540 CAAAGAGAAG TTGAAAATGA CGAGTCTACT TGTTGCTGCT CGGAGTGTGA AGGTGAAGAA 122764 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAGAAG TTGAAAATGA CGAGTCTACT TGTTGCTGCT CGGAGTGTGA AGGTGAAGAA 600 GACGATTCGG ACGACACCGA TACGGCGGAG GGAGTTGGGT GGGCAGTAGA TGTAGGGATA 122704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGATTCGG ACGACACCGA TACGGCGGAG GGAGTTGGGT GGGCAGTAGA TGTAGGGATA 660 TGGGTGATGT GCCTTGGGGT GGGGGTGGGC TATTTGGTCT CTAGAGCTTC TTCAAAGAGC 122644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGATGT GCCTTGGGGT GGGGGTGGGC TATTTGGTCT CTAGAGCTTC TTCAAAGAGC 720 TTAAGGAGGA GGAGGAGATT CCTATAAAAA AACTCATTGT TTTGGTTAAA TAATCCTGCG 122584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGGAGGA GGAGGAGATT CCTATAAAAA AACTCATTGT TTTGGTTAAA TAATCCTGCG 780 TAGACATTTT TTCCACCACT TATACCTTAT AATTTTATTA TTCTGCTAGT AATTTCTAAC 122524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGACATTTT TTCCACCACT TATACCTTAT AATTTTATTA TTCTGCTAGT AATTTCTAAC 840 AAATAGGATA TAGAAAGTTT TGTTTTCTGC AAAGTATTAC ATTTAGGCTC GTTTAATCCA 122464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAGGATA TAGAAAGTTT TGTTTTCTGC AAAGTATTAC ATTTAGGCTC GTTTAATCCA 900 AAAATAAATT ATTCTAGAAT TGTTACTTCA TCTTGTTTTT ATTACTTTGC AATTTTCGAA 122404 |||||||||| |||||||||| |||| AAAATAAATT ATTCTAGAAT TGTT...... .......... .......... .......... 924 TCAATTGTTC CACCATTTAG TAGTTTAAAT AAATACTACT GTCATAAAGA GATGAAAACA 122344 .......... .......... .......... .......... .......... .......... 924 CACTTTTGAT CGTGAGGAAT GCTTGTAAGC TCACGAGTAA TGTGGTGGGA GATGATGCAA 122284 .......... .......... .......... .......... .......... .......... 924 TTCAATTTTG GTAATTGTCA CGCTTCCCTC TTTCACTGTC TTTAATTCGA TAAAAATATT 122224 .......... .......... .......... .......... .......... .......... 924 GGATTTAAAA AATTCTGTTT GACACCCTAA TTTCATTATT TCTTACTTTA TATTTATAAC 122164 .......... .......... .......... .......... .......... .......... 924 AATCCTTTTT CCTGATTTAA ACAAGTAAAT TTCTAAGTTT ATACGAATAG ACGACTATTT 122104 .......... .......... .......... .......... .......... .......... 924 TTTAAAAAAA TCCAAGATTA ATCTCCTGTC TTTCTCATTT AACACACCAA CTTAATCAAT 122044 .......... .......... .......... .......... .......... .......... 924 CTTACGTTTA TTATTACGAT TATAAGTGAT AAATCTGGAT AGTGAACAAG GACTAATTCA 121984 .......... .......... .......... .......... .......... .......... 924 CAATTGCACA AGTAATTTGA ATTCTCATTA TTTTTTTTCT ATTTGTTTGC TAGAAATAAA 121924 ||| ||| .......... .......... .......... .......... .......... ...AAAAAAA 931 hqPGS_C08SLm0006K11.1-_SGN-U324441+ (123363 122440) Total number of EST alignments reported: 32 ________________________________________________________________________________ Predicted gene locations (16) in segment 1 to 129852: PGL 1 (+ strand): 992 3972 AGS-1 (992 1002,1037 1304,1395 1609,1699 1941,2220 2699,2805 2959,3076 3158,3241 3972) SCR (e 0.727 d 0.587 a 0.983,e 0.996 d 0.945 a 0.999,e 1.000 d 0.999 a 0.983,e 1.000 d 0.988 a 0.996,e 1.000 d 1.000 a 0.999,e 1.000 d 0.996 a 0.994,e 1.000 d 1.000 a 0.994,e 1.000) Exon 1 992 1002 ( 11 n); score: 0.727 Intron 1 1003 1036 ( 34 n); Pd: 0.587 Pa: 0.983 Exon 2 1037 1304 ( 268 n); score: 0.996 Intron 2 1305 1394 ( 90 n); Pd: 0.945 Pa: 0.999 Exon 3 1395 1609 ( 215 n); score: 1.000 Intron 3 1610 1698 ( 89 n); Pd: 0.999 Pa: 0.983 Exon 4 1699 1941 ( 243 n); score: 1.000 Intron 4 1942 2219 ( 278 n); Pd: 0.988 Pa: 0.996 Exon 5 2220 2699 ( 480 n); score: 1.000 Intron 5 2700 2804 ( 105 n); Pd: 1.000 Pa: 0.999 Exon 6 2805 2959 ( 155 n); score: 1.000 Intron 6 2960 3075 ( 116 n); Pd: 0.996 Pa: 0.994 Exon 7 3076 3158 ( 83 n); score: 1.000 Intron 7 3159 3240 ( 82 n); Pd: 1.000 Pa: 0.994 Exon 8 3241 3972 ( 732 n); score: 1.000 PGS (992 1002,1037 1304,1395 1609,1699 1941,2220 2699,2805 2959,3076 3158,3241 3972) SGN-U318405+ 3-phase translation of AGS-1 (+strand): . . : . . . . 992 GTCTGATGAGG : GCTGTCTTTCTGCACTTTCCAATGCAAAGGAGGAGGCTACAAAACTTGG V - - G : L S F C T F Q C K G G G Y K T W S D E : G C L S A L S N A K E E A T K L G L M R : A V F L H F P M Q R R R L Q N L . . . . . . 1086 TACCGTTATAGGAATTGATCTTGGGACAACCTATTCCTGTGTTGGGGTGTACAAGAATGG Y R Y R N - S W D N L F L C W G V Q E W T V I G I D L G T T Y S C V G V Y K N G V P L - E L I L G Q P I P V L G C T R M . . . . . . 1146 TCATGTGGAGATTATAGCTAATGACCAAGGAAACAGGATTACACCATCATGGGTTGCATT S C G D Y S - - P R K Q D Y T I M G C I H V E I I A N D Q G N R I T P S W V A F V M W R L - L M T K E T G L H H H G L H . . . . . . 1206 CACTGATAACGAGAGATTGATTGGTGAGGCTGCCAAGAACCTGGCTGCGGTCAACCCAGA H - - R E I D W - G C Q E P G C G Q P R T D N E R L I G E A A K N L A A V N P E S L I T R D - L V R L P R T W L R S T Q . . . . : . . 1266 AAGAACAATCTTTGATGTTAAGAGGCTGATTGGAAGAAA : ATTTGAAGATAAGGAAGTACA K N N L - C - E A D W K K : I - R - G S T R T I F D V K R L I G R K : F E D K E V Q K E Q S L M L R G - L E E : N L K I R K Y . . . . . . 1416 GAGGGATATGAAGCTGGTACCGTACAAGATTGTCAGCAAGGATGGAAAGCCCTACATACA E G Y E A G T V Q D C Q Q G W K A L H T R D M K L V P Y K I V S K D G K P Y I Q R G I - S W Y R T R L S A R M E S P T Y . . . . . . 1476 AGTCAAAATCAAGGATGGAGAAGTTAAGGTATTTAGTCCTGAGGAAATCAGCGCCATGAT S Q N Q G W R S - G I - S - G N Q R H D V K I K D G E V K V F S P E E I S A M I K S K S R M E K L R Y L V L R K S A P - . . . . . . 1536 TTTGACAAAGATGAAAGAGACAGCCGAAGCATTCCTTGGGAAGACTATTAAGGATGCTGT F D K D E R D S R S I P W E D Y - G C C L T K M K E T A E A F L G K T I K D A V F - Q R - K R Q P K H S L G R L L R M L . . : . . . . 1596 GGTCACTGTTCCTG : CATATTTCAATGATGCACAAAGACAGGCGACAAAGGATGCTGGTGT G H C S C : I F Q - C T K T G D K G C W C V T V P : A Y F N D A Q R Q A T K D A G V W S L F L : H I S M M H K D R R Q R M L V . . . . . . 1745 TATTGCTGGATTAAATGTTGCTAGGATCATTAATGAGCCAACAGCTGCAGCCATTGCCTA Y C W I K C C - D H - - A N S C S H C L I A G L N V A R I I N E P T A A A I A Y L L L D - M L L G S L M S Q Q L Q P L P . . . . . . 1805 CGGACTGGATAAGAAAGGTGGTGAGAAGAACATTCTTGTCTTTGACCTTGGTGGTGGGAC R T G - E R W - E E H S C L - P W W W D G L D K K G G E K N I L V F D L G G G T T D W I R K V V R R T F L S L T L V V G . . . . . . 1865 ATTCGATGTCAGTATTCTGACCATTGACAATGGTGTATTTGAGGTTCTTGCAACAAATGG I R C Q Y S D H - Q W C I - G S C N K W F D V S I L T I D N G V F E V L A T N G H S M S V F - P L T M V Y L R F L Q Q M . . : . . . . 1925 TGACACCCATCTTGGAG : GTGAGGACTTTGATCAAAGGATTATGGAATACTTCATCAAGTT - H P S W R : - G L - S K D Y G I L H Q V D T H L G : G E D F D Q R I M E Y F I K L V T P I L E : V R T L I K G L W N T S S S . . . . . . 2263 GATCAAGAAGAAGCATGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTAAG D Q E E A W K G H Q Q G Q Q S S W K A K I K K K H G K D I S K D N R A L G K L R - S R R S M E R T S A R T T E L L E S - . . . . . . 2323 GAGAGAAGCTGAGCGTGCCAAGAGATCCCTTAGTAGCCAGCACCAAGTCCGGGTTGAGAT E R S - A C Q E I P - - P A P S P G - D R E A E R A K R S L S S Q H Q V R V E I G E K L S V P R D P L V A S T K S G L R . . . . . . 2383 TGAATCATTATTTGATGGTACTGATTTCTCTGAACCACTGACCCGTGCTCGCTTTGAGGA - I I I - W Y - F L - T T D P C S L - G E S L F D G T D F S E P L T R A R F E E L N H Y L M V L I S L N H - P V L A L R . . . . . . 2443 GTTGAACAATGATCTCTTCAGAAAGACAATGGGACCTGTGAAGAAGGCAATGGATGATGC V E Q - S L Q K D N G T C E E G N G - C L N N D L F R K T M G P V K K A M D D A S - T M I S S E R Q W D L - R R Q W M M . . . . . . 2503 TGGCCTACAAAAGAACCAGATTGATGAGATTGTTCTTGTTGGTGGAAGCACCAGAATTCC W P T K E P D - - D C S C W W K H Q N S G L Q K N Q I D E I V L V G G S T R I P L A Y K R T R L M R L F L L V E A P E F . . . . . . 2563 TAAGGTGCAACAGCTCCTCAAAGACTATTTTGACGGGAAGGAGCCCAGCAAGGGTGTAAA - G A T A P Q R L F - R E G A Q Q G C K K V Q Q L L K D Y F D G K E P S K G V N L R C N S S S K T I L T G R S P A R V - . . . . . . 2623 TCCTGATGAAGCAGTTGCTTATGGTGCTGCTGTTCAAGGTGGTATCCTCAGTGGTGAGGG S - - S S C L W C C C S R W Y P Q W - G P D E A V A Y G A A V Q G G I L S G E G I L M K Q L L M V L L F K V V S S V V R . . : . . . . 2683 TGGAGATGAAACTAAAG : ATATCCTTCTCCTGGATGTCGCTCCTCTCACCCTTGGTATTGA W R - N - R : Y P S P G C R S S H P W Y - G D E T K : D I L L L D V A P L T L G I E V E M K L K : I S F S W M S L L S P L V L . . . . . . 2848 AACCGTTGGTGGTGTGATGACCAAATTGATCCCCAGAAATACCGTTATCCCAACCAAGAA N R W W C D D Q I D P Q K Y R Y P N Q E T V G G V M T K L I P R N T V I P T K K K P L V V - - P N - S P E I P L S Q P R . . . . . . : 2908 GTCCCAGGTCTTCACCACTTACCAAGACCAGCAGACCACTGTCTCCATTCAG : GTTTTTGA V P G L H H L P R P A D H C L H S : G F - S Q V F T T Y Q D Q Q T T V S I Q : V F E S P R S S P L T K T S R P L S P F R : F L . . . . . . 3084 AGGTGAAAGGAGTCTTACCAAGGACTGTAGGAATCTCGGGAAGTTTGATCTTACAGGAAT R - K E S Y Q G L - E S R E V - S Y R N G E R S L T K D C R N L G K F D L T G I K V K G V L P R T V G I S G S L I L Q E . . : . . . . 3144 TCCTCCAGCTCCAAG : GGGAACCCCCCAAATTGAGGTCACATTCGAAGTTGATGCCAATGG S S S S K : G N P P N - G H I R S - C Q W P P A P R : G T P Q I E V T F E V D A N G F L Q L Q : G E P P K L R S H S K L M P M . . . . . . 3286 TATCTTGAATGTCAAAGCAGAAGACAAGGGTACTGGAAAAGCAGAGAAGATTACCATTAC Y L E C Q S R R Q G Y W K S R E D Y H Y I L N V K A E D K G T G K A E K I T I T V S - M S K Q K T R V L E K Q R R L P L . . . . . . 3346 AAACGACAAGGGCCGCTTAAGCCAAGAAGAGATTGAGCGTATGGTTCGTGAAGCAGAAGA K R Q G P L K P R R D - A Y G S - S R R N D K G R L S Q E E I E R M V R E A E E Q T T R A A - A K K R L S V W F V K Q K . . . . . . 3406 GTTTGCTGAGGAAGACAAGAAAGTGAAGGAGAAGATTGATGCCCGTAACGCTTTGGAAAC V C - G R Q E S E G E D - C P - R F G N F A E E D K K V K E K I D A R N A L E T S L L R K T R K - R R R L M P V T L W K . . . . . . 3466 CTACGTGTACAACATGAAGAATCAAATCAACGACAAGGACAAATTAGCTGACAAACTCGA L R V Q H E E S N Q R Q G Q I S - Q T R Y V Y N M K N Q I N D K D K L A D K L E P T C T T - R I K S T T R T N - L T N S . . . . . . 3526 GTCTGATGAGAAGGAGAAGATTGAGACAGCAACGAAAGAAGCCCTTGAATGGTTAGACGA V - - E G E D - D S N E R S P - M V R R S D E K E K I E T A T K E A L E W L D D S L M R R R R L R Q Q R K K P L N G - T . . . . . . 3586 TAACCAGAGCGCCGAGAAAGAGGACTATGACGAGAAGCTCAAAGAGGTCGAGGCAGTTTG - P E R R E R G L - R E A Q R G R G S L N Q S A E K E D Y D E K L K E V E A V C I T R A P R K R T M T R S S K R S R Q F . . . . . . 3646 CAACCCAATCATCACAGCTGTTTATCAACGATCAGGTGGAGCCCCAGGTGGCGGTGCATC Q P N H H S C L S T I R W S P R W R C I N P I I T A V Y Q R S G G A P G G G A S A T Q S S Q L F I N D Q V E P Q V A V H . . . . . . 3706 GGAAGAAGAAGATGACAGCCATGATGAGCTGTAAGCTGTTCCAAAGAATCTCCATTGATA G R R R - Q P - - A V S C S K E S P L I E E E D D S H D E L - A V P K N L H - Y R K K K M T A M M S C K L F Q R I S I D . . . . . . 3766 CTGCAAAGATGCAGGAAATGAGGATATATAGAGTAGTTTGAAGTGAGGGTTAGTGCAAGT L Q R C R K - G Y I E - F E V R V S A S C K D A G N E D I - S S L K - G L V Q V T A K M Q E M R I Y R V V - S E G - C K . . . . . . 3826 TTTGTCATTCGTTCTGAAAAATCTCTCCCCCCTTCGCTTAGTTTTTTTTAGGTGAAGATT F V I R S E K S L P P S L S F F - V K I L S F V L K N L S P L R L V F F R - R F F C H S F - K I S P P F A - F F L G E D . . . . . . 3886 TTACTAAAGGATGTTTCCGTTCTTTGAGAACGACGGCTTGTATGTTGCTTCGATCTGTTG L L K D V S V L - E R R L V C C F D L L Y - R M F P F F E N D G L Y V A S I C - F T K G C F R S L R T T A C M L L R S V . . . 3946 AATACAACTTCAGAATTTTATTTAGTT N T T S E F Y L V I Q L Q N F I - E Y N F R I L F S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-1_AGS-1_PPS_1 (993 1002,1037 1304,1395 1609,1699 1941,2220 2699,2805 2959,3076 3158,3241 3739) (frame '2'; 1950 bp, 650 residues) 1 SDEGCLSALS NAKEEATKLG TVIGIDLGTT YSCVGVYKNG HVEIIANDQG NRITPSWVAF 61 TDNERLIGEA AKNLAAVNPE RTIFDVKRLI GRKFEDKEVQ RDMKLVPYKI VSKDGKPYIQ 121 VKIKDGEVKV FSPEEISAMI LTKMKETAEA FLGKTIKDAV VTVPAYFNDA QRQATKDAGV 181 IAGLNVARII NEPTAAAIAY GLDKKGGEKN ILVFDLGGGT FDVSILTIDN GVFEVLATNG 241 DTHLGGEDFD QRIMEYFIKL IKKKHGKDIS KDNRALGKLR REAERAKRSL SSQHQVRVEI 301 ESLFDGTDFS EPLTRARFEE LNNDLFRKTM GPVKKAMDDA GLQKNQIDEI VLVGGSTRIP 361 KVQQLLKDYF DGKEPSKGVN PDEAVAYGAA VQGGILSGEG GDETKDILLL DVAPLTLGIE 421 TVGGVMTKLI PRNTVIPTKK SQVFTTYQDQ QTTVSIQVFE GERSLTKDCR NLGKFDLTGI 481 PPAPRGTPQI EVTFEVDANG ILNVKAEDKG TGKAEKITIT NDKGRLSQEE IERMVREAEE 541 FAEEDKKVKE KIDARNALET YVYNMKNQIN DKDKLADKLE SDEKEKIETA TKEALEWLDD 601 NQSAEKEDYD EKLKEVEAVC NPIITAVYQR SGGAPGGGAS EEEDDSHDEL - PGL 2 (+ strand): 20936 29137 AGS-1 (20936 21358,22373 22591,22987 23179,24278 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29137) SCR (e 1.000 d 0.856 a 0.920,e 1.000 d 0.519 a 0.997,e 1.000 d 0.965 a 0.996,e 1.000 d 0.999 a 0.987,e 1.000 d 0.870 a 0.993,e 1.000 d 0.969 a 0.991,e 1.000 d 0.957 a 0.995,e 1.000 d 1.000 a 0.987,e 1.000 d 0.999 a 0.997,e 1.000 d 0.999 a 1.000,e 1.000 d 0.978 a 0.979,e 1.000 d 0.833 a 0.916,e 1.000 d 0.999 a 0.993,e 1.000 d 0.999 a 0.996,e 1.000 d 0.995 a 0.962,e 1.000 d 0.999 a 0.785,e 1.000 d 0.995 a 0.977,e 1.000) Exon 1 20936 21358 ( 423 n); score: 1.000 Intron 1 21359 22372 (1014 n); Pd: 0.856 Pa: 0.920 Exon 2 22373 22591 ( 219 n); score: 1.000 Intron 2 22592 22986 ( 395 n); Pd: 0.519 Pa: 0.997 Exon 3 22987 23179 ( 193 n); score: 1.000 Intron 3 23180 24277 (1098 n); Pd: 0.965 Pa: 0.996 Exon 4 24278 24486 ( 209 n); score: 1.000 Intron 4 24487 24612 ( 126 n); Pd: 0.999 Pa: 0.987 Exon 5 24613 24768 ( 156 n); score: 1.000 Intron 5 24769 25571 ( 803 n); Pd: 0.870 Pa: 0.993 Exon 6 25572 25700 ( 129 n); score: 1.000 Intron 6 25701 25807 ( 107 n); Pd: 0.969 Pa: 0.991 Exon 7 25808 25909 ( 102 n); score: 1.000 Intron 7 25910 26007 ( 98 n); Pd: 0.957 Pa: 0.995 Exon 8 26008 26154 ( 147 n); score: 1.000 Intron 8 26155 26319 ( 165 n); Pd: 1.000 Pa: 0.987 Exon 9 26320 26382 ( 63 n); score: 1.000 Intron 9 26383 26504 ( 122 n); Pd: 0.999 Pa: 0.997 Exon 10 26505 26551 ( 47 n); score: 1.000 Intron 10 26552 26716 ( 165 n); Pd: 0.999 Pa: 1.000 Exon 11 26717 26776 ( 60 n); score: 1.000 Intron 11 26777 26876 ( 100 n); Pd: 0.978 Pa: 0.979 Exon 12 26877 26959 ( 83 n); score: 1.000 Intron 12 26960 27217 ( 258 n); Pd: 0.833 Pa: 0.916 Exon 13 27218 27312 ( 95 n); score: 1.000 Intron 13 27313 27635 ( 323 n); Pd: 0.999 Pa: 0.993 Exon 14 27636 27722 ( 87 n); score: 1.000 Intron 14 27723 27951 ( 229 n); Pd: 0.999 Pa: 0.996 Exon 15 27952 28039 ( 88 n); score: 1.000 Intron 15 28040 28321 ( 282 n); Pd: 0.995 Pa: 0.962 Exon 16 28322 28407 ( 86 n); score: 1.000 Intron 16 28408 28703 ( 296 n); Pd: 0.999 Pa: 0.785 Exon 17 28704 28766 ( 63 n); score: 1.000 Intron 17 28767 28866 ( 100 n); Pd: 0.995 Pa: 0.977 Exon 18 28867 29137 ( 271 n); score: 1.000 PGS (20936 21358,22373 22591,22987 23179,24278 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 29137) SGN-U315851+ PGS (24346 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 27977) SGN-U335354+ 3-phase translation of AGS-1 (+strand): . . . . . . 20936 AAGGCAATTTATGCATGTCCTTTTTCTACAATATATCAAAAATAAATACTTAATTGAGAT K A I Y A C P F S T I Y Q K - I L N - D R Q F M H V L F L Q Y I K N K Y L I E I G N L C M S F F Y N I S K I N T - L R . . . . . . 20996 ATTTGGGTATTTCTCCTTGGCCCTGCTTTGAGGTTTCGCCAGGATTCTCTCACAGAGCCG I W V F L L G P A L R F R Q D S L T E P F G Y F S L A L L - G F A R I L S Q S R Y L G I S P W P C F E V S P G F S H R A . . . . . . 21056 CCTCACACTGTACCCGCAACCCGGTCCACAACCCATTTTCCCTTTCATTCCGGTTCATCT P H T V P A T R S T T H F P F H S G S S L T L Y P Q P G P Q P I F P F I P V H L A S H C T R N P V H N P F S L S F R F I . . . . . . 21116 TCTCCATCACCGGCAGAAGGCGGAAAGTGGAGAACGAAGATGACTGAAGTCGCGAGCAAC S P S P A E G G K W R T K M T E V A S N L H H R Q K A E S G E R R - L K S R A T F S I T G R R R K V E N E D D - S R E Q . . . . . . 21176 GTTGTACACGAAATCCTAGGCGGACGAGCTCAAGATGTAGATCAGCCTATTATCGACTAT V V H E I L G G R A Q D V D Q P I I D Y L Y T K S - A D E L K M - I S L L S T I R C T R N P R R T S S R C R S A Y Y R L . . . . . . 21236 ATTATCAATGTCGTCGCCGATGAAGATTTCGATTTTGGTCACGACGGTGAAGGTGCTTTT I I N V V A D E D F D F G H D G E G A F L S M S S P M K I S I L V T T V K V L L Y Y Q C R R R - R F R F W S R R - R C F . . . . . . 21296 GAAGCCCTTGGAGAGCTACTTGTCGATTCCGGTTGTGTTACTGACTTCTCCGAATGTCGT E A L G E L L V D S G C V T D F S E C R K P L E S Y L S I P V V L L T S P N V V - S P W R A T C R F R L C Y - L L R M S . : . . . . . 21356 GCG : GTTTGTAGCAAGTTGTCTGAGAAGTTAGAGAAGCATGAATTGGCTAAACCCCAACCG A : V C S K L S E K L E K H E L A K P Q P R : F V A S C L R S - R S M N W L N P N R C : G L - Q V V - E V R E A - I G - T P T . . . . . . 22430 ACGGTGAGAAGCTTAAAAATGCCGCTGAGAATGTTTGATGGAATGGATGAAGAGGAAGCT T V R S L K M P L R M F D G M D E E E A R - E A - K C R - E C L M E W M K R K L D G E K L K N A A E N V - W N G - R G S . . . . . . 22490 CCAAAGAATAAAAAGCCAGAACCAGTTGATGGTCCTTTGCTCACAGAACGTGACAAGATT P K N K K P E P V D G P L L T E R D K I Q R I K S Q N Q L M V L C S Q N V T R L S K E - K A R T S - W S F A H R T - Q D . . . . . : . 22550 AAGATTGAAAGAAGGAAGAGGAAAGAGGAACGCCTGAGAGAG : GCAGAATACCAAGAACAC K I E R R K R K E E R L R E : A E Y Q E H R L K E G R G K R N A - E R : Q N T K N T - D - K K E E E R G T P E R : G R I P R T . . . . . . 23005 TTGAAAGAAGTGGAGGAAGTGAAAGCTGGTATGCCTTTAGTGTGTGTGAATCATGATGGT L K E V E E V K A G M P L V C V N H D G - K K W R K - K L V C L - C V - I M M V L E R S G G S E S W Y A F S V C E S - W . . . . . . 23065 CAGGGTGATGGACCAACTGTTAAGGATATCCGTATGGAGAACTTCAATATATCTGTCGGT Q G D G P T V K D I R M E N F N I S V G R V M D Q L L R I S V W R T S I Y L S V S G - W T N C - G Y P Y G E L Q Y I C R . . . . . . : 23125 GGTCGTGAACTTATTGTCGATGGTTCTGTCACGCTTTCTTTTGGAAGACACTACG : GTCTT G R E L I V D G S V T L S F G R H Y : G L V V N L L S M V L S R F L L E D T T : V L W S - T Y C R W F C H A F F W K T L R : S . . . . . . 24283 ATTGGAAGAAACGGTACAGGGAAAACAACTCTCCTGAGGCATATGGCTATGCACGCTATT I G R N G T G K T T L L R H M A M H A I L E E T V Q G K Q L S - G I W L C T L L Y W K K R Y R E N N S P E A Y G Y A R Y . . . . . . 24343 GATGGTATTCCCAGGAACTGCCAGATATTGCATGTTGAGCAAGAAGTGGTTGGTGATAAT D G I P R N C Q I L H V E Q E V V G D N M V F P G T A R Y C M L S K K W L V I I - W Y S Q E L P D I A C - A R S G W - - . . . . . . 24403 ACCTCAGTTTTGCAATGTATTCTTAACACTGATATGGAGAGAACCCAACTTCTGGAAGAA T S V L Q C I L N T D M E R T Q L L E E P Q F C N V F L T L I W R E P N F W K K Y L S F A M Y S - H - Y G E N P T S G R . . . : . . . 24463 GAGGCTCGTCTGCTTGAATTACAG : AGAGTGACCGACTTAGAAGGCGAATCTGCAAAGAGT E A R L L E L Q : R V T D L E G E S A K S R L V C L N Y R : E - P T - K A N L Q R V R G S S A - I T : E S D R L R R R I C K E . . . . . . 24649 GATAAGTTGAATGGAGGTATCGACAAAAATTCGCAAGCAAAAAGGCTTGAAGAGATATAC D K L N G G I D K N S Q A K R L E E I Y I S - M E V S T K I R K Q K G L K R Y T - - V E W R Y R Q K F A S K K A - R D I . . . . . . : 24709 AAAAGACTTGATTTCATTGATGCTTACTCGGCTGAGTCACGTGCAGCAACTATACTATCG : K R L D F I D A Y S A E S R A A T I L S : K D L I S L M L T R L S H V Q Q L Y Y R : Q K T - F H - C L L G - V T C S N Y T I : . . . . . . 25572 GGTTTGAGCTTCTCTCCAGAAATGCAAAAGAGAGCAACCAAAACATTTTCTGGAGGATGG G L S F S P E M Q K R A T K T F S G G W V - A S L Q K C K R E Q P K H F L E D G G F E L L S R N A K E S N Q N I F W R M . . . . . . 25632 AGAATGAGAATCGCTCTTGCTCGGGCATTGTTCATTGAACCTGATCTATTGTTGCTTGAT R M R I A L A R A L F I E P D L L L L D E - E S L L L G H C S L N L I Y C C L M E N E N R S C S G I V H - T - S I V A - . : . . . . . 25692 GAACCCACG : AATCATCTTGATCTGCATGCTGTCTTATGGCTGGAAAGTTACCTGGTGAAG E P T : N H L D L H A V L W L E S Y L V K N P R : I I L I C M L S Y G W K V T W - S - T H : E S S - S A C C L M A G K L P G E . . . . . . : 25859 TGGCCGAAGACATTTATAGTTGTGTCTCATGCTAGAGAGTTCTTGAATTCT : GTAGTCACA W P K T F I V V S H A R E F L N S : V V T G R R H L - L C L M L E S S - I L : - S Q V A E D I Y S C V S C - R V L E F : C S H . . . . . . 26017 GATATCATCCATCTACAAAATCAGAAATTGAGCACCTTTAAAGGAGACTATGATACATTT D I I H L Q N Q K L S T F K G D Y D T F I S S I Y K I R N - A P L K E T M I H L R Y H P S T K S E I E H L - R R L - Y I . . . . . . 26077 GAAAGGACACGAGAAGAACAAGTTAAGAATCAACAGAAAGCATTCGAGGCAAATGAACGT E R T R E E Q V K N Q Q K A F E A N E R K G H E K N K L R I N R K H S R Q M N V - K D T R R T S - E S T E S I R G K - T . . : . . . . 26137 ACAAGGGCCCACATGCAG : ACCTTTATTGACAAGTTCAGGTACAATGCAAAGCGTGCATCT T R A H M Q : T F I D K F R Y N A K R A S Q G P T C R : P L L T S S G T M Q S V H L Y K G P H A : D L Y - Q V Q V Q C K A C I . . . : . . . 26362 CTTGTTCAGTCTAGAATTAAG : GCACTGGAACGAATTGGTCGTGTGGATGAAGTCATCAAT L V Q S R I K : A L E R I G R V D E V I N L F S L E L R : H W N E L V V W M K S S M S C S V - N - : G T G T N W S C G - S H Q . : . . . . . 26544 GATCCTGA : CTACAAGTTTGAGTTCCCTTCTCCTGATGATAGACCTGGCGCTCCTATTATA D P D : Y K F E F P S P D D R P G A P I I I L : T T S L S S L L L M I D L A L L L - - S - : L Q V - V P F S - - - T W R S Y Y . : . . . . . 26769 AGCTTCAG : TGACGCATCCTTTGGATATCCTGGGGGACCAATATTGTTCAAAAATTTGAAT S F S : D A S F G Y P G G P I L F K N L N A S : V T H P L D I L G D Q Y C S K I - I K L Q : - R I L W I S W G T N I V Q K F E . . . . : . . 26929 TTTGGAATAGATTTGGATAGCAGAGTAGCAA : TGGTTGGTCCTAATGGTATTGGAAAGTCA F G I D L D S R V A : M V G P N G I G K S L E - I W I A E - Q : W L V L M V L E S Q F W N R F G - Q S S N : G W S - W Y W K V . . . . . . 27247 ACAATACTTAAGCTTATTTCTGGGGAGCTTCAACCAACCTCAGGGACTGTTTTCCGCTCT T I L K L I S G E L Q P T S G T V F R S Q Y L S L F L G S F N Q P Q G L F S A L N N T - A Y F W G A S T N L R D C F P L . : . . . . . 27307 GCTAAG : GTCCGTATTGCTGTATTTAGTCAGCATCATGTTGATGGGCTGGATCTGTCCTCA A K : V R I A V F S Q H H V D G L D L S S L R : S V L L Y L V S I M L M G W I C P Q C - : G P Y C C I - S A S C - W A G S V L . . . . : . . 27690 AATCCCCTCTTATACATGATGCGTTGCTTTCCA : GGAGTGCCTGAACAAAAATTACGTGGT N P L L Y M M R C F P : G V P E Q K L R G I P S Y T - C V A F Q : E C L N K N Y V V K S P L I H D A L L S : R S A - T K I T W . . . . . . 27979 CATCTAGGTTCATTTGGTATAACCGGAAATCTTGCTCTTCAGCCCATGTACACTTTATCT H L G S F G I T G N L A L Q P M Y T L S I - V H L V - P E I L L F S P C T L Y L S S R F I W Y N R K S C S S A H V H F I . : . . . . . 28039 G : GTGGCCAAAAAAGCAGAGTTGCATTTGCAAAGATAACTTTCAAGAAACCTCACATATTG : G G Q K S R V A F A K I T F K K P H I L : V A K K A E L H L Q R - L S R N L T Y C W : W P K K Q S C I C K D N F Q E T S H I . . . : . . . 28381 CTTCTTGATGAGCCGTCAAATCACTTG : GATCTGGACGCTGTGGAAGCCTTGATACAAGGT L L D E P S N H L : D L D A V E A L I Q G F L M S R Q I T W : I W T L W K P - Y K V A S - - A V K S L : G S G R C G S L D T R . . . : . . . 28737 CTTGTCTTGTTCCAAGGAGGCGTCCTGATG : GTCAGTCACGATGAACATTTAATATCTGGC L V L F Q G G V L M : V S H D E H L I S G L S C S K E A S - W : S V T M N I - Y L A S C L V P R R R P D : G Q S R - T F N I W . . . . . . 28897 AGTGTTGATCAACTCTGGGCTGTCTCTGAGGGCAGAGTGACGCCTTTTGACGGGACATTC S V D Q L W A V S E G R V T P F D G T F V L I N S G L S L R A E - R L L T G H S Q C - S T L G C L - G Q S D A F - R D I . . . . . . 28957 CAAGATTACAAGAAAATATTGCAATCATAAACACTTCTGCTGCTTTCTGAAGTGAACGAA Q D Y K K I L Q S - T L L L L S E V N E K I T R K Y C N H K H F C C F L K - T N P R L Q E N I A I I N T S A A F - S E R . . . . . . 29017 CTATAATTAGTTACTTATGGCCTAAACCCCTACTTTTATGCAGAGACCACATGTTCGATG L - L V T Y G L N P Y F Y A E T T C S M Y N - L L M A - T P T F M Q R P H V R C T I I S Y L W P K P L L L C R D H M F D . . . . . . 29077 TAAAATTTCGAAACCAAATTCTGAAGAATGTTCTAAAACAAATAGTGATTTTCTACTCCT - N F E T K F - R M F - N K - - F S T P K I S K P N S E E C S K T N S D F L L L V K F R N Q I L K N V L K Q I V I F Y S . 29137 A Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-2_AGS-1_PPS_1 (20993 21358,22373 22591,22987 23179,24278 24486,24613 24768,25572 25700,25808 25909,26008 26154,26320 26382,26505 26551,26717 26776,26877 26959,27218 27312,27636 27722,27952 28039,28322 28407,28704 28766,28867 28986) (frame '1'; 2310 bp, 770 residues) 1 DIWVFLLGPA LRFRQDSLTE PPHTVPATRS TTHFPFHSGS SSPSPAEGGK WRTKMTEVAS 61 NVVHEILGGR AQDVDQPIID YIINVVADED FDFGHDGEGA FEALGELLVD SGCVTDFSEC 121 RAVCSKLSEK LEKHELAKPQ PTVRSLKMPL RMFDGMDEEE APKNKKPEPV DGPLLTERDK 181 IKIERRKRKE ERLREAEYQE HLKEVEEVKA GMPLVCVNHD GQGDGPTVKD IRMENFNISV 241 GGRELIVDGS VTLSFGRHYG LIGRNGTGKT TLLRHMAMHA IDGIPRNCQI LHVEQEVVGD 301 NTSVLQCILN TDMERTQLLE EEARLLELQR VTDLEGESAK SDKLNGGIDK NSQAKRLEEI 361 YKRLDFIDAY SAESRAATIL SGLSFSPEMQ KRATKTFSGG WRMRIALARA LFIEPDLLLL 421 DEPTNHLDLH AVLWLESYLV KWPKTFIVVS HAREFLNSVV TDIIHLQNQK LSTFKGDYDT 481 FERTREEQVK NQQKAFEANE RTRAHMQTFI DKFRYNAKRA SLVQSRIKAL ERIGRVDEVI 541 NDPDYKFEFP SPDDRPGAPI ISFSDASFGY PGGPILFKNL NFGIDLDSRV AMVGPNGIGK 601 STILKLISGE LQPTSGTVFR SAKVRIAVFS QHHVDGLDLS SNPLLYMMRC FPGVPEQKLR 661 GHLGSFGITG NLALQPMYTL SGGQKSRVAF AKITFKKPHI LLLDEPSNHL DLDAVEALIQ 721 GLVLFQGGVL MVSHDEHLIS GSVDQLWAVS EGRVTPFDGT FQDYKKILQS - PGL 3 (+ strand): 44883 48077 AGS-1 (44883 45376,45453 45579) SCR (e 1.000 d 1.000 a 0.995,e 1.000) Exon 1 44883 45376 ( 494 n); score: 1.000 Intron 1 45377 45452 ( 76 n); Pd: 1.000 Pa: 0.995 Exon 2 45453 45579 ( 127 n); score: 1.000 PGS (44883 45376,45453 45579) SGN-U328023+ 3-phase translation of AGS-1 (+strand): . . . . . . 44883 CACAACCTCCATAACTATTTTCTCTCTATCAGTTTCTCTGTATACTGCTTCTTCTCTTTT H N L H N Y F L S I S F S V Y C F F S F T T S I T I F S L S V S L Y T A S S L F Q P P - L F S L Y Q F L C I L L L L F . . . . . . 44943 TAGAGTAGAAAAATCGCAGGCCTAGAGTTGTACTAGTTTCGCCTTTTTGTGTTCTGAATC - S R K I A G L E L Y - F R L F V F - I R V E K S Q A - S C T S F A F L C S E S L E - K N R R P R V V L V S P F C V L N . . . . . . 45003 ACTGTAAAGTGTGTGAGGTTTCGGCTATCGCATCAACAACAGTCAATAGCAACTACTTTC T V K C V R F R L S H Q Q Q S I A T T F L - S V - G F G Y R I N N S Q - Q L L S H C K V C E V S A I A S T T V N S N Y F . . . . . . 45063 TTTTTTTTTTCGTTTTCGGTTTTCCCAATTGTTATGGTGTATGGACCACTAGTACTGCAA F F F S F S V F P I V M V Y G P L V L Q F F F R F R F S Q L L W C M D H - Y C K L F F F V F G F P N C Y G V W T T S T A . . . . . . 45123 AAAGTTGTTTTCTGTGAAAGCAATTTCTGGAAGGAAAATCAAGCATAGTGTGTTTGTTGT K V V F C E S N F W K E N Q A - C V C C K L F S V K A I S G R K I K H S V F V V K S C F L - K Q F L E G K S S I V C L L . . . . . . 45183 ACAGCACTACTGTAGTTACTAGTAAAAAACCACTGTATCACATAGAGAGCGTGAAAAATT T A L L - L L V K N H C I T - R A - K I Q H Y C S Y - - K T T V S H R E R E K L Y S T T V V T S K K P L Y H I E S V K N . . . . . . 45243 AACCAAAAAAATGCTTGAAACGGTGAAGTACTTGCTTGGTTCCGCCGGAGCTAGCGGTTA N Q K N A - N G E V L A W F R R S - R L T K K M L E T V K Y L L G S A G A S G Y - P K K C L K R - S T C L V P P E L A V . . . . . . 45303 CGGTTCAAAATCCACTGCCGAGAACGTCACCGAACAGTCTCCTGATCTTCGGTCGGTCAC R F K I H C R E R H R T V S - S S V G H G S K S T A E N V T E Q S P D L R S V T T V Q N P L P R T S P N S L L I F G R S . . : . . . . 45363 CGCTATTATCACTG : GTGCGACGTCAGGAATTGGAGCGGAGACGGCGAGAGTTCTGGCAAA R Y Y H W : C D V R N W S G D G E S S G K A I I T : G A T S G I G A E T A R V L A K P L L S L : V R R Q E L E R R R R E F W Q . . . . . . 45499 ACGTGGTGTTAAGCTGATTTTACCGGCGCGTAGTGTAAAAGCGGCAGAGGAAACAAAAAC T W C - A D F T G A - C K S G R G N K N R G V K L I L P A R S V K A A E E T K T N V V L S - F Y R R V V - K R Q R K Q K . . . 45559 TCGAATCCTATCTGAAGTGCC S N P I - S A R I L S E V L E S Y L K C Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-3_AGS-1_PPS_1 (45208 45376,45453 45577) (frame '2'; 294 bp, 98 residues) 1 KTTVSHRERE KLTKKMLETV KYLLGSAGAS GYGSKSTAEN VTEQSPDLRS VTAIITGATS 61 GIGAETARVL AKRGVKLILP ARSVKAAEET KTRILSEV AGS-2 (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47424,47583 48077) SCR (e 0.962 d 0.990 a 0.999,e 1.000 d 0.999 a 0.996,e 1.000 d 0.994 a 0.989,e 1.000 d 0.999 a 0.999,e 1.000 d 1.000 a 0.997,e 1.000 d 0.999 a 0.993,e 1.000) Exon 1 45580 45684 ( 105 n); score: 0.962 Intron 1 45685 45794 ( 110 n); Pd: 0.990 Pa: 0.999 Exon 2 45795 45874 ( 80 n); score: 1.000 Intron 2 45875 45982 ( 108 n); Pd: 0.999 Pa: 0.996 Exon 3 45983 46139 ( 157 n); score: 1.000 Intron 3 46140 46780 ( 641 n); Pd: 0.994 Pa: 0.989 Exon 4 46781 46862 ( 82 n); score: 1.000 Intron 4 46863 47055 ( 193 n); Pd: 0.999 Pa: 0.999 Exon 5 47056 47143 ( 88 n); score: 1.000 Intron 5 47144 47377 ( 234 n); Pd: 1.000 Pa: 0.997 Exon 6 47378 47424 ( 47 n); score: 1.000 Intron 6 47425 47582 ( 158 n); Pd: 0.999 Pa: 0.993 Exon 7 47583 48077 ( 495 n); score: 1.000 PGS (45580 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47424,47583 48077) SGN-U327327+ 3-phase translation of AGS-2 (+strand): . . . . . . 45580 GGAGGCGGAGATCATCGTTATGGCTCTCGATCTTAGCTCTCTGAGTTCCGTACGGAATTT G G G D H R Y G S R S - L S E F R T E F E A E I I V M A L D L S S L S S V R N F R R R S S L W L S I L A L - V P Y G I . . . . . : . 45640 CGTCGCTGAATTTGAATATCTGAATTTTCCTCTCAATCTTCTCAT : AAACAACGCCGGAAA R R - I - I S E F S S Q S S H : K Q R R K V A E F E Y L N F P L N L L I : N N A G K S S L N L N I - I F L S I F S : - T T P E . . . . . . 45810 ATTCGCTCACCAGCATGCCATTTCTGAGGATGGAATTGAGATGACATTTGCTACTAATCA I R S P A C H F - G W N - D D I C Y - S F A H Q H A I S E D G I E M T F A T N H N S L T S M P F L R M E L R - H L L L I . : . . . . . 45870 CTTAG : GCCATTTCCTTTTAACAAAGCTTTTACTGAAGAAGATGATCGAGACGGCTAATGA L R : P F P F N K A F T E E D D R D G - - L : G H F L L T K L L L K K M I E T A N E T - : A I S F - Q S F Y - R R - S R R L M . . . . . . 46038 AACGGGCGTTCAAGGAAGAATAGTGAATGTATCCTCAAGCATCCATGGCTGGTTTTCCGG N G R S R K N S E C I L K H P W L V F R T G V Q G R I V N V S S S I H G W F S G K R A F K E E - - M Y P Q A S M A G F P . . . . . : . 46098 CGACTCGATTCAGTACCTCCGACTGATCACTAAAGACAAAAG : TCAATACGATGCGACACG R L D S V P P T D H - R Q K : S I R C D T D S I Q Y L R L I T K D K S : Q Y D A T R A T R F S T S D - S L K T K : V N T M R H . . . . . . 46799 TGCATATGCTCTCTCGAAGCTGGCTAATGTTTTGCACACCAAGGAGCTGGCTCGGGTATT C I C S L E A G - C F A H Q G A G S G I A Y A L S K L A N V L H T K E L A R V L V H M L S R S W L M F C T P R S W L G Y . : . . . . . 46859 GAAA : AAAACGGGGGCAAATGTGACAGTCAATTGTGTTCATCCTGGAATTGTAAGAACTAG E : K N G G K C D S Q L C S S W N C K N - K : K T G A N V T V N C V H P G I V R T R - K : K R G Q M - Q S I V F I L E L - E L . . . . : . . 47112 ACTCACTAGAGAACGAGAAGGCCTCGTCACTG : ATCTGGTATTCTTTTTGACCTCAAAACT T H - R T R R P R H - : S G I L F D L K T L T R E R E G L V T : D L V F F L T S K L D S L E N E K A S S L : I W Y S F - P Q N . . : . . . . 47406 CTTGAAGACTATTCCACAG : GCAGCTGCAACAACTTGCTATGTTGCTACTCACCCAAGACT L E D Y S T : G S C N N L L C C Y S P K T L K T I P Q : A A A T T C Y V A T H P R L S - R L F H R : Q L Q Q L A M L L L T Q D . . . . . . 47624 TGCAAATGTGAGTGGAAAATATTTTGCAGACTGTAATGAAGTTTGTTCTTCAAAGTTGGG C K C E W K I F C R L - - S L F F K V G A N V S G K Y F A D C N E V C S S K L G L Q M - V E N I L Q T V M K F V L Q S W . . . . . . 47684 TTCCAATTCAACAGAAGCAGCACGCATATGGTCAGCTTCAGAGATCATGGTTGCAAAAAA F Q F N R S S T H M V S F R D H G C K K S N S T E A A R I W S A S E I M V A K N V P I Q Q K Q H A Y G Q L Q R S W L Q K . . . . . . 47744 TTCAAATGCAAATTTAGATCCATTGGAGGCCAGCTTACTCTGACGCTCAAAGCGACTCGT F K C K F R S I G G Q L T L T L K A T R S N A N L D P L E A S L L - R S K R L V I Q M Q I - I H W R P A Y S D A Q S D S . . . . . . 47804 TCCTTGGCTGCGGAGGATTTAAAACAGGCTATAAACAGAAAATAGTTAGTTCTTATATGG S L A A E D L K Q A I N R K - L V L I W P W L R R I - N R L - T E N S - F L Y G F L G C G G F K T G Y K Q K I V S S Y M . . . . . . 47864 TGTAGGACTTCTGGCATAATGAGGAAGATATAAGTAAGTAGTTCATGTATAAAGGAAAAG C R T S G I M R K I - V S S S C I K E K V G L L A - - G R Y K - V V H V - R K S V - D F W H N E E D I S K - F M Y K G K . . . . . . 47924 TTTTTGCAGCAACATAAACAATATATATATATATATAATACACACAAACCTAGCTAGCTA F L Q Q H K Q Y I Y I Y N T H K P S - L F C S N I N N I Y I Y I I H T N L A S - V F A A T - T I Y I Y I - Y T Q T - L A . . . . . . 47984 GGAGTATGTTCATCTATATAGTAAGCTTAGAACTCCTATTATAATATGTACATTGGTTTT G V C S S I - - A - N S Y Y N M Y I G F E Y V H L Y S K L R T P I I I C T L V L R S M F I Y I V S L E L L L - Y V H W F . . . . 48044 ATTTGTTCGTTTAGTTTGTTAATGTTAAATTTTA I C S F S L L M L N F F V R L V C - C - I L Y L F V - F V N V K F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-3_AGS-2_PPS_1 (45581 45684,45795 45874,45983 46139,46781 46862,47056 47143,47378 47424,47583 47786) (frame '2'; 759 bp, 253 residues) 1 EAEIIVMALD LSSLSSVRNF VAEFEYLNFP LNLLINNAGK FAHQHAISED GIEMTFATNH 61 LGHFLLTKLL LKKMIETANE TGVQGRIVNV SSSIHGWFSG DSIQYLRLIT KDKSQYDATR 121 AYALSKLANV LHTKELARVL KKTGANVTVN CVHPGIVRTR LTREREGLVT DLVFFLTSKL 181 LKTIPQAAAT TCYVATHPRL ANVSGKYFAD CNEVCSSKLG SNSTEAARIW SASEIMVAKN 241 SNANLDPLEA SLL- PGL 4 (+ strand): 54084 55370 AGS-1 (54084 54512,54608 54765) SCR (e 1.000 d 0.992 a 0.955,e 1.000) Exon 1 54084 54512 ( 429 n); score: 1.000 Intron 1 54513 54607 ( 95 n); Pd: 0.992 Pa: 0.955 Exon 2 54608 54765 ( 158 n); score: 1.000 PGS (54084 54512,54608 54765) SGN-U327489+ 3-phase translation of AGS-1 (+strand): . . . . . . 54084 ATTGATCTCTTCTTCGCTTCTGGAGTGAATTTGCCTTTTTGGTTTGTACTTGGGTTTGAA I D L F F A S G V N L P F W F V L G F E L I S S S L L E - I C L F G L Y L G L N - S L L R F W S E F A F L V C T W V - . . . . . . 54144 TCATGTTTTTTTTAACTCTGATGCCATTGACTTGTAGAGGTCGAAAGGAGAGCCTCTACG S C F F - L - C H - L V E V E R R A S T H V F F N S D A I D L - R S K G E P L R I M F F L T L M P L T C R G R K E S L Y . . . . . . 54204 TGGCTTTGAAGATGAAAAGTTTTGCTTCATCGCTTTTAGACGAGGAGAACGGCCAAAGCA W L - R - K V L L H R F - T R R T A K A G F E D E K F C F I A F R R G E R P K Q V A L K M K S F A S S L L D E E N G Q S . . . . . . 54264 AGTTCTTCTTCAAGAATACGGAATGCCAATTGTTAATTTGTTTTTAGCTTGTTCCATCAT S S S S R I R N A N C - F V F S L F H H V L L Q E Y G M P I V N L F L A C S I I K F F F K N T E C Q L L I C F - L V P S . . . . . . 54324 TACCATTGTGAAGTGCAAATTTTCACTTTTTATTTTTATTTTTTATTTTCGCCATCTTCT Y H C E V Q I F T F Y F Y F L F S P S S T I V K C K F S L F I F I F Y F R H L L L P L - S A N F H F L F L F F I F A I F . . . . . . 54384 TAAAGTCTCCATTGAACTAATTTCTTTGTTTTTCAAGCAGAGAGCCTTGGCCATTGGATA - S L H - T N F F V F Q A E S L G H W I K V S I E L I S L F F K Q R A L A I G - L K S P L N - F L C F S S R E P W P L D . . . . . . 54444 GTATGAAGTTTGAGACATTGAAGGAGCAGCATGCCAGAAGGAATCCAGAGGATTTAGAAA V - S L R H - R S S M P E G I Q R I - K Y E V - D I E G A A C Q K E S R G F R N S M K F E T L K E Q H A R R N P E D L E . : . . . . . 54504 TTGACTATG : AGGACCAATTCATCTCAGAAGATGAGGGTATTGAGGATGAAGTAGATCATG L T M : R T N S S Q K M R V L R M K - I M - L - : G P I H L R R - G Y - G - S R S C I D Y : E D Q F I S E D E G I E D E V D H . . . . . . 54659 TCACATATGATTCCGATGCTACAGAAACAGATGCTGTTACTGAAAATGATGATTGGGAGG S H M I P M L Q K Q M L L L K M M I G R H I - F R C Y R N R C C Y - K - - L G G V T Y D S D A T E T D A V T E N D D W E . . . . . 54719 AAGAAGGTGAAGAAAGGACCCATGCCGATCTTGGTGGTGGTTGGGGA K K V K K G P M P I L V V V G R R - R K D P C R S W W W L G E E G E E R T H A D L G G G W G Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-4_AGS-1_PPS_1 (54404 54512,54608 54765) (frame '0'; 267 bp, 89 residues) 1 FLCFSSREPW PLDSMKFETL KEQHARRNPE DLEIDYEDQF ISEDEGIEDE VDHVTYDSDA 61 TETDAVTEND DWEEEGEERT HADLGGGWG >C08SLm0006K11.1+_PGL-4_AGS-1_PPS_2 (54181 54444) (frame '2'; 261 bp, 87 residues) 1 RSKGEPLRGF EDEKFCFIAF RRGERPKQVL LQEYGMPIVN LFLACSIITI VKCKFSLFIF 61 IFYFRHLLKV SIELISLFFK QRALAIG- AGS-2 (54820 55370) SCR (e 1.000) Exon 1 54820 55370 ( 551 n); score: 1.000 PGS (54820 55370) SGN-U326306+ 3-phase translation of AGS-2 (+strand): . . . . . . 54820 CGATCAATAAATCAAGAAGGCAGTGAAGGGTCATTTGAACGGATTGTTATTACAAAGAGC R S I N Q E G S E G S F E R I V I T K S D Q - I K K A V K G H L N G L L L Q R A I N K S R R Q - R V I - T D C Y Y K E . . . . . . 54880 AGAAACCCAACATTGCATCATCAGGCGCGAAGATCGCTTTGGGGTGACTTATGGCCCTTC R N P T L H H Q A R R S L W G D L W P F E T Q H C I I R R E D R F G V T Y G P S Q K P N I A S S G A K I A L G - L M A L . . . . . . 54940 TAAATTTTGTTAGAAAAATGGCACTCAAGGTGTTTGGTCCATCAGTAAGAGCGCAGTGTG - I L L E K W H S R C L V H Q - E R S V K F C - K N G T Q G V W S I S K S A V - L N F V R K M A L K V F G P S V R A Q C . . . . . . 55000 ATGTCTGAGTTAGGCACTCATCACAGAGTTCAAATGTCGCAACAAACAAAAGCCTGGTAG M S E L G T H H R V Q M S Q Q T K A W - C L S - A L I T E F K C R N K Q K P G R D V - V R H S S Q S S N V A T N K S L V . . . . . . 55060 GAGGGGCACGTCTATAATCCATCAAGTCTCAAACTATGCTTCACTTGCCCTCAGTTATCA E G H V Y N P S S L K L C F T C P Q L S R G T S I I H Q V S N Y A S L A L S Y Q G G A R L - S I K S Q T M L H L P S V I . . . . . . 55120 AAGAAATTATTTTTGTTAAAAATAGTTTCTTGAGTAATGTAATAAATGTATTTTCGTGTG K K L F L L K I V S - V M - - M Y F R V R N Y F C - K - F L E - C N K C I F V C K E I I F V K N S F L S N V I N V F S C . . . . . . 55180 TACCCATTTTCTGAAAAAGAAGAAAAGTGAAGTCAGATGGTTATTCTGATTATGACAGAG Y P F S E K E E K - S Q M V I L I M T E T H F L K K K K S E V R W L F - L - Q R V P I F - K R R K V K S D G Y S D Y D R . . . . . . 55240 GATAAGATTGGGCCAAATGGCTCAAAAAGTAGAGTTACTGCATACATGTGAACCACATAT D K I G P N G S K S R V T A Y M - T T Y I R L G Q M A Q K V E L L H T C E P H M G - D W A K W L K K - S Y C I H V N H I . . . . . . 55300 GTCTTATTCATAATTCTTGTACGGAATCATGGAACAGTAAAAGAGTTCGAGTCACGTGCC V L F I I L V R N H G T V K E F E S R A S Y S - F L Y G I M E Q - K S S S H V P C L I H N S C T E S W N S K R V R V T C . . 55360 AGCTTAGAAGA S L E A - K Q L R R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 55370 TCTTCTAAGCTGGCACGTGACTCGAACTCTTTTACTGTTCCATGATTCCGTACAAGAATT S S K L A R D S N S F T V P - F R T R I L L S W H V T R T L L L F H D S V Q E L F - A G T - L E L F Y C S M I P Y K N . . . . . . 55310 ATGAATAAGACATATGTGGTTCACATGTATGCAGTAACTCTACTTTTTGAGCCATTTGGC M N K T Y V V H M Y A V T L L F E P F G - I R H M W F T C M Q - L Y F L S H L A Y E - D I C G S H V C S N S T F - A I W . . . . . . 55250 CCAATCTTATCCTCTGTCATAATCAGAATAACCATCTGACTTCACTTTTCTTCTTTTTCA P I L S S V I I R I T I - L H F S S F S Q S Y P L S - S E - P S D F T F L L F Q P N L I L C H N Q N N H L T S L F F F F . . . . . . 55190 GAAAATGGGTACACACGAAAATACATTTATTACATTACTCAAGAAACTATTTTTAACAAA E N G Y T R K Y I Y Y I T Q E T I F N K K M G T H E N T F I T L L K K L F L T K R K W V H T K I H L L H Y S R N Y F - Q . . . . . . 55130 AATAATTTCTTTGATAACTGAGGGCAAGTGAAGCATAGTTTGAGACTTGATGGATTATAG N N F F D N - G Q V K H S L R L D G L - I I S L I T E G K - S I V - D L M D Y R K - F L - - L R A S E A - F E T - W I I . . . . . . 55070 ACGTGCCCCTCCTACCAGGCTTTTGTTTGTTGCGACATTTGAACTCTGTGATGAGTGCCT T C P S Y Q A F V C C D I - T L - - V P R A P P T R L L F V A T F E L C D E C L D V P L L P G F C L L R H L N S V M S A . . . . . . 55010 AACTCAGACATCACACTGCGCTCTTACTGATGGACCAAACACCTTGAGTGCCATTTTTCT N S D I T L R S Y - W T K H L E C H F S T Q T S H C A L T D G P N T L S A I F L - L R H H T A L L L M D Q T P - V P F F . . . . . . 54950 AACAAAATTTAGAAGGGCCATAAGTCACCCCAAAGCGATCTTCGCGCCTGATGATGCAAT N K I - K G H K S P Q S D L R A - - C N T K F R R A I S H P K A I F A P D D A M - Q N L E G P - V T P K R S S R L M M Q . . . . . . 54890 GTTGGGTTTCTGCTCTTTGTAATAACAATCCGTTCAAATGACCCTTCACTGCCTTCTTGA V G F L L F V I T I R S N D P S L P S - L G F C S L - - Q S V Q M T L H C L L D C W V S A L C N N N P F K - P F T A F L . . 54830 TTTATTGATCG F I D L L I I Y - S Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-4_AGS-2_PPS_1 (55087 54869) (frame '2'; 216 bp, 72 residues) 1 DLMDYRRAPP TRLLFVATFE LCDECLTQTS HCALTDGPNT LSAIFLTKFR RAISHPKAIF 61 APDDAMLGFC SL- PGL 5 (- strand): 57447 56168 AGS-1 (57447 57221,56970 56168) SCR (e 1.000 d 0.997 a 0.796,e 1.000) Exon 1 57447 57221 ( 227 n); score: 1.000 Intron 1 57220 56971 ( 250 n); Pd: 0.997 Pa: 0.796 Exon 2 56970 56168 ( 803 n); score: 1.000 PGS (57447 57221,56970 56168) SGN-U320618+ PGS (56688 56168) SGN-U337164- 3-phase translation of AGS-1 (-strand): . . . . . . 57447 AGATCACTACCTTTCTCCTAATTTTTGCATCTTCTTAGTTCTCTCTGTTCTGAAAATTTT R S L P F S - F L H L L S S L C S E N F D H Y L S P N F C I F L V L S V L K I F I T T F L L I F A S S - F S L F - K F . . . . . . 57387 TCTTTAGAAAAAACACACACAAAAAAAAATAAAAATGGGAAGAGCACCATGTTGTGCTAA S L E K T H T K K N K N G K S T M L C - L - K K H T Q K K I K M G R A P C C A K F F R K N T H K K K - K W E E H H V V L . . . . . . 57327 AGAAGGATTGCGTAAAGGGCCATGGTCTACTAAAGAAGATTTATTACTTACTAATTATAT R R I A - R A M V Y - R R F I T Y - L Y E G L R K G P W S T K E D L L L T N Y I K K D C V K G H G L L K K I Y Y L L I I . . . . . : . 57267 CAATCAATATGGTGAAGGCCAATGGAGATCTTTGCCTAAAAATGCTG : GATTGCTTAGGTG Q S I W - R P M E I F A - K C W : I A - V N Q Y G E G Q W R S L P K N A : G L L R C S I N M V K A N G D L C L K M L : D C L G . . . . . . 56957 TGGGAAAAGTTGTAGATTAAGATGGGTGAATTATTTAAAGCCAGGGATTAAAAGAGGAAA W E K L - I K M G E L F K A R D - K R K G K S C R L R W V N Y L K P G I K R G N V G K V V D - D G - I I - S Q G L K E E . . . . . . 56897 TTTTAGTGAAGATGAAGAAGATCTTATAGTGAGATTACATTCACTTCTGGGTAATCGTTG F - - R - R R S Y S E I T F T S G - S L F S E D E E D L I V R L H S L L G N R W I L V K M K K I L - - D Y I H F W V I V . . . . . . 56837 GTCATTAATTGCCGGACGATTACCTGGTCGAACAGATAATGAAATCAAGAATTATTGGAA V I N C R T I T W S N R - - N Q E L L E S L I A G R L P G R T D N E I K N Y W N G H - L P D D Y L V E Q I M K S R I I G . . . . . . 56777 TACGCATTTGACCAAGAAGCTCAGAAGCACAGGAATTGAACCAAAACCCCACAAGAATTT Y A F D Q E A Q K H R N - T K T P Q E F T H L T K K L R S T G I E P K P H K N L I R I - P R S S E A Q E L N Q N P T R I . . . . . . 56717 GACCAAATTAAAGGAGAAATCAAGAAAACAAACCAAAAAGGAGAAATCAAGAAAAGAAGT D Q I K G E I K K T N Q K G E I K K R S T K L K E K S R K Q T K K E K S R K E V - P N - R R N Q E N K P K R R N Q E K K . . . . . . 56657 GGGGAAGAAAAGCAATGATGAGAAGTTGAAGGGTCAAATTGCACAAGTTGAGAAGATAAA G E E K Q - - E V E G S N C T S - E D K G K K S N D E K L K G Q I A Q V E K I K W G R K A M M R S - R V K L H K L R R - . . . . . . 56597 AGTATTTGCACCAAAGCCCATAAGGATTTCTTGTGGGATTTCAAGGAACAATAGTTTTGA S I C T K A H K D F L W D F K E Q - F - V F A P K P I R I S C G I S R N N S F E K Y L H Q S P - G F L V G F Q G T I V L . . . . . . 56537 AAATGATACATTGAGTACTACTACTTGTTCCTCAAATAGTAATTTTGAAAAAGTTGATGA K - Y I E Y Y Y L F L K - - F - K S - - N D T L S T T T C S S N S N F E K V D D K M I H - V L L L V P Q I V I L K K L M . . . . . . 56477 TGGAAAAGACAGGGAAAAAGAGGTGAAGTTATTTCCAAGGGAATTAGATTTTGATGAATT W K R Q G K R G E V I S K G I R F - - I G K D R E K E V K L F P R E L D F D E L M E K T G K K R - S Y F Q G N - I L M N . . . . . . 56417 ACTTGAAGGGGGTGGATTTTATGATGAATTTCTTATGGGAGAAAGCTGCAATTTTTCAAA T - R G W I L - - I S Y G R K L Q F F K L E G G G F Y D E F L M G E S C N F S N Y L K G V D F M M N F L W E K A A I F Q . . . . . . 56357 CAAAGTGGAAATGAATGATAATATGGTGGAAAAAGTATATGAAGAATATCTTCTACTTCT Q S G N E - - Y G G K S I - R I S S T S K V E M N D N M V E K V Y E E Y L L L L T K W K - M I I W W K K Y M K N I F Y F . . . . . . 56297 TTCTGAAATTCAAGAAGATCAAACGGAGCAAAAATTCTCAATGTAAGTTTTAGTTTGGAT F - N S R R S N G A K I L N V S F S L D S E I Q E D Q T E Q K F S M - V L V W I F L K F K K I K R S K N S Q C K F - F G . . . . . . 56237 AGGCTTTTTATAAAGTTTGTTGATCCGACTAATTCAAATTAACGAGTAATGTATATTTGT R L F I K F V D P T N S N - R V M Y I C G F L - S L L I R L I Q I N E - C I F V - A F Y K V C - S D - F K L T S N V Y L . 56177 TTAGTTTCTA L V S - F L F S F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-5_AGS-1_PPS_1 (57380 57221,56970 56252) (frame '2'; 876 bp, 292 residues) 1 KKHTQKKIKM GRAPCCAKEG LRKGPWSTKE DLLLTNYINQ YGEGQWRSLP KNAGLLRCGK 61 SCRLRWVNYL KPGIKRGNFS EDEEDLIVRL HSLLGNRWSL IAGRLPGRTD NEIKNYWNTH 121 LTKKLRSTGI EPKPHKNLTK LKEKSRKQTK KEKSRKEVGK KSNDEKLKGQ IAQVEKIKVF 181 APKPIRISCG ISRNNSFEND TLSTTTCSSN SNFEKVDDGK DREKEVKLFP RELDFDELLE 241 GGGFYDEFLM GESCNFSNKV EMNDNMVEKV YEEYLLLLSE IQEDQTEQKF SM- PGL 6 (- strand): 63008 61263 AGS-1 (63008 62649,61374 61263) SCR (e 1.000 d 0.960 a 0.978,e 1.000) Exon 1 63008 62649 ( 360 n); score: 1.000 Intron 1 62648 61375 (1274 n); Pd: 0.960 Pa: 0.978 Exon 2 61374 61263 ( 112 n); score: 1.000 PGS (63008 62649,61374 61263) SGN-U316418+ 3-phase translation of AGS-1 (-strand): . . . . . . 63008 GATCGAACCCACCGGCTATAGGCTCGTCGTTTCATATTCCTTTGATCAATAATATACTTT D R T H R L - A R R F I F L - S I I Y F I E P T G Y R L V V S Y S F D Q - Y T L S N P P A I G S S F H I P L I N N I L . . . . . . 62948 GAACTTCAATATTTTTCATCTTCAAATCAAATTTGGGCGACGAAAGCTCCATTTTTTTTA E L Q Y F S S S N Q I W A T K A P F F L N F N I F H L Q I K F G R R K L H F F - - T S I F F I F K S N L G D E S S I F F . . . . . . 62888 ACATCTTCCTATACATTGGATCTTACTTTCATTGAATTTTCAAGAATTTATTGTATGGCA T S S Y T L D L T F I E F S R I Y C M A H L P I H W I L L S L N F Q E F I V W Q N I F L Y I G S Y F H - I F K N L L Y G . . . . . . 62828 AATTATTATGTAACGGCGGTTCCGCCGACGGATCTGAATCGGAATACCGAGTGGTTCACG N Y Y V T A V P P T D L N R N T E W F T I I M - R R F R R R I - I G I P S G S R K L L C N G G S A D G S E S E Y R V V H . . . . . . 62768 TATCCCGGTGTATGGACGACCTACATCCTAATTCTATTCTTCTCATGGCTCGTTGTTCTC Y P G V W T T Y I L I L F F S W L V V L I P V Y G R P T S - F Y S S H G S L F S V S R C M D D L H P N S I L L M A R C S . . . . . . : 62708 TCTGTATTTGGTTGCTCTCCTGGCATGGCTTGGACCATCGTCCATCTTTCTCATTTTCTC : S V F G C S P G M A W T I V H L S H F L : L Y L V A L L A W L G P S S I F L I F S : L C I W L L S W H G L D H R P S F S F S : . . . . . . 61374 GTCACATATCAATGTTTTCACTGGAAGAAGGGAACACCATTTGCTGATGATCAAGGTATC V T Y Q C F H W K K G T P F A D D Q G I S H I N V F T G R R E H H L L M I K V S R H I S M F S L E E G N T I C - - S R Y . . . . . . 61314 TACAATAGGTTGACTTGGTGGGAGCAGATAGATAGTGGGAAGCAGCTTACAC Y N R L T W W E Q I D S G K Q L T T I G - L G G S R - I V G S S L H L Q - V D L V G A D R - W E A A Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-6_AGS-1_PPS_1 (62963 62649,61374 61264) (frame '1'; 426 bp, 142 residues) 1 SIIYFELQYF SSSNQIWATK APFFLTSSYT LDLTFIEFSR IYCMANYYVT AVPPTDLNRN 61 TEWFTYPGVW TTYILILFFS WLVVLSVFGC SPGMAWTIVH LSHFLVTYQC FHWKKGTPFA 121 DDQGIYNRLT WWEQIDSGKQ LT AGS-2 (61554 61263) SCR (e 0.940) Exon 1 61554 61263 ( 292 n); score: 0.940 PGS (61554 61263) SGN-U335658- 3-phase translation of AGS-2 (-strand): . . . . . . 61554 GGGAGGAAACCTTGTTTATATATCTACTCTGGATTTTACCTCTTTGTGTAAGACTCTGCC G R K P C L Y I Y S G F Y L F V - D S A G G N L V Y I S T L D F T S L C K T L P E E T L F I Y L L W I L P L C V R L C . . . . . . 61494 TTCTCTATAAATATGCATTTCTTATATCAATAATTTCCACTGGAAGAAGGGAACACAATT F S I N M H F L Y Q - F P L E E G N T I S L - I C I S Y I N N F H W K K G T Q L L L Y K Y A F L I S I I S T G R R E H N . . . . . . 61434 GTACATACTCCAAATTTTAGGTGTCTTTACAAACGCCTTCGTATTGTCATTTATCTTCAG V H T P N F R C L Y K R L R I V I Y L Q Y I L Q I L G V F T N A F V L S F I F R C T Y S K F - V S L Q T P S Y C H L S S . . . . . . 61374 GTCACATATCAATGTTTTCACTGGAAGAAGGGAACACCATTTGCTGATGATCAAGGTATC V T Y Q C F H W K K G T P F A D D Q G I S H I N V F T G R R E H H L L M I K V S G H I S M F S L E E G N T I C - - S R Y . . . . . . 61314 TACAATAGGTTGACTTGGTGGGAGCAGATAGATAGTGGGAAGCAGCTTACAC Y N R L T W W E Q I D S G K Q L T T I G - L G G S R - I V G S S L H L Q - V D L V G A D R - W E A A Y Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-6_AGS-2_PPS_1 (61461 61264) (frame '1'; 198 bp, 66 residues) 1 FPLEEGNTIV HTPNFRCLYK RLRIVIYLQV TYQCFHWKKG TPFADDQGIY NRLTWWEQID 61 SGKQLT 3-phase translation of AGS-2 (+strand): . . . . . . 61263 GTGTAAGCTGCTTCCCACTATCTATCTGCTCCCACCAAGTCAACCTATTGTAGATACCTT V - A A S H Y L S A P T K S T Y C R Y L C K L L P T I Y L L P P S Q P I V D T L V S C F P L S I C S H Q V N L L - I P . . . . . . 61323 GATCATCAGCAAATGGTGTTCCCTTCTTCCAGTGAAAACATTGATATGTGACCTGAAGAT D H Q Q M V F P S S S E N I D M - P E D I I S K W C S L L P V K T L I C D L K I - S S A N G V P F F Q - K H - Y V T - R . . . . . . 61383 AAATGACAATACGAAGGCGTTTGTAAAGACACCTAAAATTTGGAGTATGTACAATTGTGT K - Q Y E G V C K D T - N L E Y V Q L C N D N T K A F V K T P K I W S M Y N C V - M T I R R R L - R H L K F G V C T I V . . . . . . 61443 TCCCTTCTTCCAGTGGAAATTATTGATATAAGAAATGCATATTTATAGAGAAGGCAGAGT S L L P V E I I D I R N A Y L - R R Q S P F F Q W K L L I - E M H I Y R E G R V F P S S S G N Y - Y K K C I F I E K A E . . . . . . 61503 CTTACACAAAGAGGTAAAATCCAGAGTAGATATATAAACAAGGTTTCCTCCC L T Q R G K I Q S R Y I N K V S S L H K E V K S R V D I - T R F P P S Y T K R - N P E - I Y K Q G F L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-6_AGS-2_PPS_1 (61264 61473) (frame '2'; 207 bp, 69 residues) 1 CKLLPTIYLL PPSQPIVDTL IISKWCSLLP VKTLICDLKI NDNTKAFVKT PKIWSMYNCV 61 PFFQWKLLI- AGS-3 (62577 61773) SCR (e 0.987) Exon 1 62577 61773 ( 805 n); score: 0.987 PGS (62577 61773) SGN-U331812+ 3-phase translation of AGS-3 (-strand): . . . . . . 62577 TTAAACTCGTCAAATTTTGATAAAATTATAATCAAGTTCAGTTTTTTTTTGGTTTAAATG L N S S N F D K I I I K F S F F L V - M - T R Q I L I K L - S S S V F F W F K W K L V K F - - N Y N Q V Q F F F G L N . . . . . . 62517 GGTCTGATTAGAGGAATAGCAGTTTAAATGTTTGGTTGATTGATATTCTTATGATTACAT G L I R G I A V - M F G - L I F L - L H V - L E E - Q F K C L V D - Y S Y D Y M G S D - R N S S L N V W L I D I L M I T . . . . . . 62457 GCCTAGTTCGTTTAGTGTTTCCTGTGTTTTTGGTACTATGGAATTTGGAGACTCAATTTG A - F V - C F L C F W Y Y G I W R L N L P S S F S V S C V F G T M E F G D S I W C L V R L V F P V F L V L W N L E T Q F . . . . . . 62397 GAATTGATTTGAGCTAGGTTCAGCTTTGGGTCATTGATCATTTCCTTATGTTCAATTTGG E L I - A R F S F G S L I I S L C S I W N - F E L G S A L G H - S F P Y V Q F G G I D L S - V Q L W V I D H F L M F N L . . . . . . 62337 AAGTGAGAGATTCTGGGGTTGTAGCTGAAAAAGTGGTGAATTGAAATTCTTTTAGTACTA K - E I L G L - L K K W - I E I L L V L S E R F W G C S - K S G E L K F F - Y - E V R D S G V V A E K V V N - N S F S T . . . . . . 62277 GTCTTGATTCCTAGATATGGTGGAAAATATTACAGCTGAGCTTTACCTTGTGTGATTGAT V L I P R Y G G K Y Y S - A L P C V I D S - F L D M V E N I T A E L Y L V - L I S L D S - I W W K I L Q L S F T L C D - . . . . . . 62217 TGTTGATTTAAGGCCTAGATAGTTGGACATGCCGAATGTATCGAAAGCTATGGCCTTTTT C - F K A - I V G H A E C I E S Y G L F V D L R P R - L D M P N V S K A M A F L L L I - G L D S W T C R M Y R K L W P F . . . . . . 62157 GGTGTCTAATATATTTGGTTTTTCCATTTCAATCAAACTTCACTAGACATTATTGCTGTA G V - Y I W F F H F N Q T S L D I I A V V S N I F G F S I S I K L H - T L L L - W C L I Y L V F P F Q S N F T R H Y C C . . . . . . 62097 GTCTCATATTTGTTGAAGGTATCCTATTAGGATGGAGATTAGCCAAGGTTCCTATATTGG V S Y L L K V S Y - D G D - P R F L Y W S H I C - R Y P I R M E I S Q G S Y I G S L I F V E G I L L G W R L A K V P I L . . . . . . 62037 TCGACATCTCGCGTTATAGTGTCTTTATATTGGTTTCGAGAACTTTTTCCACTTGAACTA S T S R V I V S L Y W F R E L F P L E L R H L A L - C L Y I G F E N F F H L N - V D I S R Y S V F I L V S R T F S T - T . . . . . . 61977 GTTTTTGGAGTTTAGTTGGATTCAAGACCATTTTCATGACAATTATGATGTTTGCTGGAT V F G V - L D S R P F S - Q L - C L L D F L E F S W I Q D H F H D N Y D V C W M S F W S L V G F K T I F M T I M M F A G . . . . . . 61917 GTTCCTTGTTATTTCGTTATTTGATCACTAGCATACAGAGAAACAAGTACATTTGAAACA V P C Y F V I - S L A Y R E T S T F E T F L V I S L F D H - H T E K Q V H L K H C S L L F R Y L I T S I Q R N K Y I - N . . . . . . 61857 TGGGAGATTTTTGCAGATGTGGATGGTTAGTACTTCTATTGAGATTGATAATGTGAAAGC W E I F A D V D G - Y F Y - D - - C E S G R F L Q M W M V S T S I E I D N V K A M G D F C R C G W L V L L L R L I M - K . . . 61797 TTGATTATATCTATTACCTTTTTTT L I I S I T F F - L Y L L P F F L D Y I Y Y L F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-6_AGS-3_PPS_1 (62206 61982) (frame '0'; 222 bp, 74 residues) 1 GLDSWTCRMY RKLWPFWCLI YLVFPFQSNF TRHYCCSLIF VEGILLGWRL AKVPILVDIS 61 RYSVFILVSR TFST- 3-phase translation of AGS-3 (+strand): . . . . . . 61773 AAAAAAAGGTAATAGATATAATCAAGCTTTCACATTATCAATCTCAATAGAAGTACTAAC K K R - - I - S S F H I I N L N R S T N K K G N R Y N Q A F T L S I S I E V L T K K V I D I I K L S H Y Q S Q - K Y - . . . . . . 61833 CATCCACATCTGCAAAAATCTCCCATGTTTCAAATGTACTTGTTTCTCTGTATGCTAGTG H P H L Q K S P M F Q M Y L F L C M L V I H I C K N L P C F K C T C F S V C - - P S T S A K I S H V S N V L V S L Y A S . . . . . . 61893 ATCAAATAACGAAATAACAAGGAACATCCAGCAAACATCATAATTGTCATGAAAATGGTC I K - R N N K E H P A N I I I V M K M V S N N E I T R N I Q Q T S - L S - K W S D Q I T K - Q G T S S K H H N C H E N G . . . . . . 61953 TTGAATCCAACTAAACTCCAAAAACTAGTTCAAGTGGAAAAAGTTCTCGAAACCAATATA L N P T K L Q K L V Q V E K V L E T N I - I Q L N S K N - F K W K K F S K P I - L E S N - T P K T S S S G K S S R N Q Y . . . . . . 62013 AAGACACTATAACGCGAGATGTCGACCAATATAGGAACCTTGGCTAATCTCCATCCTAAT K T L - R E M S T N I G T L A N L H P N R H Y N A R C R P I - E P W L I S I L I K D T I T R D V D Q Y R N L G - S P S - . . . . . . 62073 AGGATACCTTCAACAAATATGAGACTACAGCAATAATGTCTAGTGAAGTTTGATTGAAAT R I P S T N M R L Q Q - C L V K F D - N G Y L Q Q I - D Y S N N V - - S L I E M - D T F N K Y E T T A I M S S E V - L K . . . . . . 62133 GGAAAAACCAAATATATTAGACACCAAAAAGGCCATAGCTTTCGATACATTCGGCATGTC G K T K Y I R H Q K G H S F R Y I R H V E K P N I L D T K K A I A F D T F G M S W K N Q I Y - T P K R P - L S I H S A C . . . . . . 62193 CAACTATCTAGGCCTTAAATCAACAATCAATCACACAAGGTAAAGCTCAGCTGTAATATT Q L S R P - I N N Q S H K V K L S C N I N Y L G L K S T I N H T R - S S A V I F P T I - A L N Q Q S I T Q G K A Q L - Y . . . . . . 62253 TTCCACCATATCTAGGAATCAAGACTAGTACTAAAAGAATTTCAATTCACCACTTTTTCA F H H I - E S R L V L K E F Q F T T F S S T I S R N Q D - Y - K N F N S P L F Q F P P Y L G I K T S T K R I S I H H F F . . . . . . 62313 GCTACAACCCCAGAATCTCTCACTTCCAAATTGAACATAAGGAAATGATCAATGACCCAA A T T P E S L T S K L N I R K - S M T Q L Q P Q N L S L P N - T - G N D Q - P K S Y N P R I S H F Q I E H K E M I N D P . . . . . . 62373 AGCTGAACCTAGCTCAAATCAATTCCAAATTGAGTCTCCAAATTCCATAGTACCAAAAAC S - T - L K S I P N - V S K F H S T K N A E P S S N Q F Q I E S P N S I V P K T K L N L A Q I N S K L S L Q I P - Y Q K . . . . . . 62433 ACAGGAAACACTAAACGAACTAGGCATGTAATCATAAGAATATCAATCAACCAAACATTT T G N T K R T R H V I I R I S I N Q T F Q E T L N E L G M - S - E Y Q S T K H L H R K H - T N - A C N H K N I N Q P N I . . . . . . 62493 AAACTGCTATTCCTCTAATCAGACCCATTTAAACCAAAAAAAAACTGAACTTGATTATAA K L L F L - S D P F K P K K N - T - L - N C Y S S N Q T H L N Q K K T E L D Y N - T A I P L I R P I - T K K K L N L I I . . . 62553 TTTTATCAAAATTTGACGAGTTTAA F Y Q N L T S L F I K I - R V - I L S K F D E F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (+ strand): 80669 81818 AGS-1 (80669 80818,80907 81013,81203 81346,81429 81818) SCR (e 0.987 d 0.912 a 0.988,e 1.000 d 0.998 a 0.851,e 0.993 d 0.977 a 0.849,e 1.000) Exon 1 80669 80818 ( 150 n); score: 0.987 Intron 1 80819 80906 ( 88 n); Pd: 0.912 Pa: 0.988 Exon 2 80907 81013 ( 107 n); score: 1.000 Intron 2 81014 81202 ( 189 n); Pd: 0.998 Pa: 0.851 Exon 3 81203 81346 ( 144 n); score: 0.993 Intron 3 81347 81428 ( 82 n); Pd: 0.977 Pa: 0.849 Exon 4 81429 81818 ( 390 n); score: 1.000 PGS (80669 80818,80907 81013,81203 81346,81429 81818) SGN-U333240- 3-phase translation of AGS-1 (+strand): . . . . . . 80669 TGAACATGGCTCACGAGAGAGTATCAACGATCATCATCGGTGCTTCCTTGTGTGTTATTA - T W L T R E Y Q R S S S V L P C V L L E H G S R E S I N D H H R C F L V C Y Y N M A H E R V S T I I I G A S L C V I . . . . . . 80729 CAAGCATTCTCATATTTCCCATATGGGCTGGTGAAGAGCTCCATAAACTTGTCATTAGTA Q A F S Y F P Y G L V K S S I N L S L V K H S H I S H M G W - R A P - T C H - - T S I L I F P I W A G E E L H K L V I S . . . : . . . 80789 ACTTGGAAAAGCTAGCAGAGTCCTTAGATT : GTTGTGTAGCTGAATTTTTTAGCGACAGTG T W K S - Q S P - I : V V - L N F L A T V L G K A S R V L R L : L C S - I F - R Q - N L E K L A E S L D : C C V A E F F S D S . . . . . . 80937 AAGACACAACAACAAATACTAAAAAAATGCTAGCTTTCAAGTGTGTGTTGAATTCAAAGG K T Q Q Q I L K K C - L S S V C - I Q R R H N N K Y - K N A S F Q V C V E F K G E D T T T N T K K M L A F K C V L N S K . . : . . . . 80997 CCTCTGAAGAGACAATG : GCCAACTTTGCTAGATGGGAGCCTGCTCATGGACTTTTCAACT P L K R Q W : P T L L D G S L L M D F S T L - R D N : G Q L C - M G A C S W T F Q L A S E E T M : A N F A R W E P A H G L F N . . . . . . 81246 TTCAACATCCATGGGGAAAGTACCTTAAGATCAGCGCGTCAATGCGTAGTTGTGCCTGTT F N I H G E S T L R S A R Q C V V V P V S T S M G K V P - D Q R V N A - L C L L F Q H P W G K Y L K I S A S M R S C A C . . . . . : . 81306 GCATTGAGGCACTTACAAGCTGCATCAATCAAAAAGATCAG : GCTTCTGAGTTGTTAAAGA A L R H L Q A A S I K K I R : L L S C - R H - G T Y K L H Q S K R S : G F - V V K E C I E A L T S C I N Q K D Q : A S E L L K . . . . . . 81448 ATGAGCTTACTAACACTTGCCAACAAGTAAGTTCAAGTACAAGTGAGATACTGAAAGAGT M S L L T L A N K - V Q V Q V R Y - K S - A Y - H L P T S K F K Y K - D T E R V N E L T N T C Q Q V S S S T S E I L K E . . . . . . 81508 TAGCTTTAAACATGAAAACAATGAGAAAATCCTCCAGGATGGATATCTTACTACAAGAAA - L - T - K Q - E N P P G W I S Y Y K K S F K H E N N E K I L Q D G Y L T T R K L A L N M K T M R K S S R M D I L L Q E . . . . . . 81568 AGAGTAACGCGATTCAAGAACTAGAAACTCTGATGGAACAACTTTCAGGATTGCTTTTTA R V T R F K N - K L - W N N F Q D C F L E - R D S R T R N S D G T T F R I A F Y K S N A I Q E L E T L M E Q L S G L L F . . . . . . 81628 TACAGCCAAAGAATGATCAAGAAAAGCCAGTTATAAGAACCAGTAGTACTAATGTTATCC Y S Q R M I K K S Q L - E P V V L M L S T A K E - S R K A S Y K N Q - Y - C Y P I Q P K N D Q E K P V I R T S S T N V I . . . . . . 81688 CTCTTGTTGAAATCATACCAACTGCAACATTTGCTTCTTTAGTGATCGAAATTGCCACGA L L L K S Y Q L Q H L L L - - S K L P R S C - N H T N C N I C F F S D R N C H E P L V E I I P T A T F A S L V I E I A T . . . . . . 81748 GGATCGAAGGGGTTGTTGATGGTGTTGAAGAATTATCAAAATTGGCAAAATTCAAACTTG G S K G L L M V L K N Y Q N W Q N S N L D R R G C - W C - R I I K I G K I Q T - R I E G V V D G V E E L S K L A K F K L . . 81808 AGGATGCTGAT R M L G C - E D A D Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-7_AGS-1_PPS_1 (80671 80818,80907 81013,81203 81346,81429 81818) (frame '0'; 789 bp, 263 residues) 1 NMAHERVSTI IIGASLCVIT SILIFPIWAG EELHKLVISN LEKLAESLDC CVAEFFSDSE 61 DTTTNTKKML AFKCVLNSKA SEETMANFAR WEPAHGLFNF QHPWGKYLKI SASMRSCACC 121 IEALTSCINQ KDQASELLKN ELTNTCQQVS SSTSEILKEL ALNMKTMRKS SRMDILLQEK 181 SNAIQELETL MEQLSGLLFI QPKNDQEKPV IRTSSTNVIP LVEIIPTATF ASLVIEIATR 241 IEGVVDGVEE LSKLAKFKLE DAD PGL 8 (+ strand): 82706 82882 AGS-1 (82706 82882) SCR (e 0.734) Exon 1 82706 82882 ( 177 n); score: 0.734 PGS (82706 82882) SGN-U315404+ 3-phase translation of AGS-1 (+strand): . . . . . . 82706 TATATTGTATAATTATAAGTGTATAGGACGAAGATATATGTATTTGCATGTGTATATACA Y I V - L - V Y R T K I Y V F A C V Y T I L Y N Y K C I G R R Y M Y L H V Y I Q Y C I I I S V - D E D I C I C M C I Y . . . . . . 82766 ATTTTCTCTCGCTTTATGCAAACGGAAACGCAATTTATACATTTCGTTTGTATAAGCGAT I F S R F M Q T E T Q F I H F V C I S D F S L A L C K R K R N L Y I S F V - A I N F L S L Y A N G N A I Y T F R L Y K R . . . . . . 82826 AGAGGCGAGAGTGTTGAGAGAGATCTGGGAGAGAGGAGAGAGGGGAGAGGGGAACAA R G E S V E R D L G E R R E G R G E Q E A R V L R E I W E R G E R G E G N - R R E C - E R S G R E E R G E R G T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 82882 TTGTTCCCCTCTCCCCTCTCTCCTCTCTCCCAGATCTCTCTCAACACTCTCGCCTCTATC L F P S P L S P L S Q I S L N T L A S I C S P L P S L L S P R S L S T L S P L S V P L S P L S S L P D L S Q H S R L Y . . . . . . 82822 GCTTATACAAACGAAATGTATAAATTGCGTTTCCGTTTGCATAAAGCGAGAGAAAATTGT A Y T N E M Y K L R F R L H K A R E N C L I Q T K C I N C V S V C I K R E K I V R L Y K R N V - I A F P F A - S E R K L . . . . . . 82762 ATATACACATGCAAATACATATATCTTCGTCCTATACACTTATAATTATACAATATA I Y T C K Y I Y L R P I H L - L Y N I Y T H A N T Y I F V L Y T Y N Y T I Y I H M Q I H I S S S Y T L I I I Q Y Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (+ strand): 83296 85353 AGS-1 (83296 83437,84939 85011,85200 85353) SCR (e 1.000 d 0.902 a 0.978,e 1.000 d 0.999 a 0.188,e 1.000) Exon 1 83296 83437 ( 142 n); score: 1.000 Intron 1 83438 84938 (1501 n); Pd: 0.902 Pa: 0.978 Exon 2 84939 85011 ( 73 n); score: 1.000 Intron 2 85012 85199 ( 188 n); Pd: 0.999 Pa: 0.188 Exon 3 85200 85353 ( 154 n); score: 1.000 PGS (83296 83437,84939 85011,85200 85353) SGN-U332665+ 3-phase translation of AGS-1 (+strand): . . . . . . 83296 AAAAAGCTACAGCTTTCAAGGTTTTGATCTTTTTCTCTTAATTAATTGCTTTACTTTTTG K K L Q L S R F - S F S L N - L L Y F L K S Y S F Q G F D L F L L I N C F T F C K A T A F K V L I F F S - L I A L L F . . . . . . 83356 CCATGGCCGACGAAATTATAACATCGGAGGGAGTTTCAAGTTCGTCTGAGCTGAACTCGT P W P T K L - H R R E F Q V R L S - T R H G R R N Y N I G G S F K F V - A E L V A M A D E I I T S E G V S S S S E L N S . . . : . . . 83416 CGTCTCGTATAATATGTCGGGT : TTGTCAAAAGCAATTTTCGCAGTATACCTGCCCTCGAT R L V - Y V G : F V K S N F R S I P A L D V S Y N M S G : L S K A I F A V Y L P S M S S R I I C R V : C Q K Q F S Q Y T C P R . . . . : . . 84977 GTAATACCCGTTATTGCTCTCTGCCTTGTTACAAG : TCTCATAGTCTTCGTTGCACCGAAT V I P V I A L C L V T S : L I V F V A P N - Y P L L L S A L L Q : V S - S S L H R I C N T R Y C S L P C Y K : S H S L R C T E . . . . . . 85225 CCTTTATGAGAGAGAATGTCATGGAGGAACTACAGCATTTGCAACCAAATGATGGAAGTA P L - E R M S W R N Y S I C N Q M M E V L Y E R E C H G G T T A F A T K - W K - S F M R E N V M E E L Q H L Q P N D G S . . . . . . 85285 AGCAGAAAATGCTAGACATACTTAAACGATTCCACTCAGAAGATGAAGCAGACATCATGG S R K C - T Y L N D S T Q K M K Q T S W A E N A R H T - T I P L R R - S R H H G K Q K M L D I L K R F H S E D E A D I M . 85345 ATGAAGATG M K M - R D E D Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-9_AGS-1_PPS_1 (83337 83437,84939 85011,85200 85352) (frame '0'; 327 bp, 109 residues) 1 LIALLFAMAD EIITSEGVSS SSELNSSSRI ICRVCQKQFS QYTCPRCNTR YCSLPCYKSH 61 SLRCTESFMR ENVMEELQHL QPNDGSKQKM LDILKRFHSE DEADIMDED PGL 10 (+ strand): 86210 87035 AGS-1 (86210 87035) SCR (e 0.976) Exon 1 86210 87035 ( 826 n); score: 0.976 PGS (86210 87035) SGN-U340134- 3-phase translation of AGS-1 (+strand): . . . . . . 86210 AGAAAGCTCAGTGCAGCTGGGCCATCCCCTTTACTGGCTGTTCACCTTGTTGACATCATG R K L S A A G P S P L L A V H L V D I M E S S V Q L G H P L Y W L F T L L T S C K A Q C S W A I P F T G C S P C - H H . . . . . . 86270 TACAGTTATTGCTTTACTCTTCGCCTCTACAATGGTGACTGGCAATCAGATCCCGTAGGA Y S Y C F T L R L Y N G D W Q S D P V G T V I A L L F A S T M V T G N Q I P - D V Q L L L Y S S P L Q W - L A I R S R R . . . . . . 86330 TCAGCCACAGTTTTGTTGAGCGTCTCTTCTGTTCTTGGTCAAGGGGGGCAGCCAGAGACA S A T V L L S V S S V L G Q G G Q P E T Q P Q F C - A S L L F L V K G G S Q R Q I S H S F V E R L F C S W S R G A A R D . . . . . . 86390 GTCCTGGAAGCTCTATCCCACTGCATGGAGCAAACATGCTCATCAGCCTTCAGACACACG V L E A L S H C M E Q T C S S A F R H T S W K L Y P T A W S K H A H Q P S D T R S P G S S I P L H G A N M L I S L Q T H . . . . . . 86450 GGGGGCCTGCAATTCGCATTGGGGCTAATCAACGACACAATAACCCTTCTTCATCTTGAT G G L Q F A L G L I N D T I T L L H L D G A C N S H W G - S T T Q - P F F I L I G G P A I R I G A N Q R H N N P S S S - . . . . . . 86510 ACTCCAGCCGTAGTTTGCCTGCTTTGTGACCTAAGGAGACTAATCCAACACGCAGAGAAG T P A V V C L L C D L R R L I Q H A E K L Q P - F A C F V T - G D - S N T Q R R Y S S R S L P A L - P K E T N P T R R E . . . . . . 86570 GATTTGAAGTCGGAGAAGTACTGCAAGTCCAAAAGTTCTGAAATGAAAACGAAGCTCAAG D L K S E K Y C K S K S S E M K T K L K I - S R R S T A S P K V L K - K R S S S G F E V G E V L Q V Q K F - N E N E A Q . . . . . . 86630 TCTGCAGAAAGGAAGGTTTATTTTATCATGTGTTGGGCTCACGAGCAGCCAAAAGAAGCA S A E R K V Y F I M C W A H E Q P K E A L Q K G R F I L S C V G L T S S Q K K H V C R K E G L F Y H V L G S R A A K R S . . . . . . 86690 TGGTCTTCCATAGCAGCCATTGTCGAGGCAGAGAAGAGCCGACTAGTTGAATTCGTAGGG W S S I A A I V E A E K S R L V E F V G G L P - Q P L S R Q R R A D - L N S - G M V F H S S H C R G R E E P T S - I R R . . . . . . 86750 AGTAAAACAAGTGTTCCAAAAATGACGAAAGTACAGAGTGAGGGCAGGCCTCTGATTAAG S K T S V P K M T K V Q S E G R P L I K V K Q V F Q K - R K Y R V R A G L - L R E - N K C S K N D E S T E - G Q A S D - . . . . . . 86810 GAGGTTGAATAACTGTCTGTTCCTTCTGCATGACAAGCTGCAGCAGATAACACAAGATCA E V E - L S V P S A - Q A A A D N T R S R L N N C L F L L H D K L Q Q I T Q D Q G G - I T V C S F C M T S C S R - H K I . . . . . . 86870 GTGATGCTTGCAAAAATGTTAAGTTCAGATCACTGAGTTTTGACTTTGTATAATTGCCTG V M L A K M L S S D H - V L T L Y N C L - C L Q K C - V Q I T E F - L C I I A - S D A C K N V K F R S L S F D F V - L P . . . . . . 86930 AATTATTTTATTCACTTTCTCTTTGGAACTTTTTCATGGGCCACTGAAACAATTTAAGAG N Y F I H F L F G T F S W A T E T I - E I I L F T F S L E L F H G P L K Q F K R E L F Y S L S L W N F F M G H - N N L R . . . . . 86990 AAGAAAAGCAAAAGCTTATATGGAAAAGAGATAATTTACTTATCTA K K S K S L Y G K E I I Y L S R K A K A Y M E K R - F T Y L E E K Q K L I W K R D N L L I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-10_AGS-1_PPS_1 (86210 86821) (frame '1'; 609 bp, 203 residues) 1 RKLSAAGPSP LLAVHLVDIM YSYCFTLRLY NGDWQSDPVG SATVLLSVSS VLGQGGQPET 61 VLEALSHCME QTCSSAFRHT GGLQFALGLI NDTITLLHLD TPAVVCLLCD LRRLIQHAEK 121 DLKSEKYCKS KSSEMKTKLK SAERKVYFIM CWAHEQPKEA WSSIAAIVEA EKSRLVEFVG 181 SKTSVPKMTK VQSEGRPLIK EVE- 3-phase translation of AGS-1 (-strand): . . . . . . 87035 TAGATAAGTAAATTATCTCTTTTCCATATAAGCTTTTGCTTTTCTTCTCTTAAATTGTTT - I S K L S L F H I S F C F S S L K L F R - V N Y L F S I - A F A F L L L N C F D K - I I S F P Y K L L L F F S - I V . . . . . . 86975 CAGTGGCCCATGAAAAAGTTCCAAAGAGAAAGTGAATAAAATAATTCAGGCAATTATACA Q W P M K K F Q R E S E - N N S G N Y T S G P - K S S K E K V N K I I Q A I I Q S V A H E K V P K R K - I K - F R Q L Y . . . . . . 86915 AAGTCAAAACTCAGTGATCTGAACTTAACATTTTTGCAAGCATCACTGATCTTGTGTTAT K S K L S D L N L T F L Q A S L I L C Y S Q N S V I - T - H F C K H H - S C V I K V K T Q - S E L N I F A S I T D L V L . . . . . . 86855 CTGCTGCAGCTTGTCATGCAGAAGGAACAGACAGTTATTCAACCTCCTTAATCAGAGGCC L L Q L V M Q K E Q T V I Q P P - S E A C C S L S C R R N R Q L F N L L N Q R P S A A A C H A E G T D S Y S T S L I R G . . . . . . 86795 TGCCCTCACTCTGTACTTTCGTCATTTTTGGAACACTTGTTTTACTCCCTACGAATTCAA C P H S V L S S F L E H L F Y S L R I Q A L T L Y F R H F W N T C F T P Y E F N L P S L C T F V I F G T L V L L P T N S . . . . . . 86735 CTAGTCGGCTCTTCTCTGCCTCGACAATGGCTGCTATGGAAGACCATGCTTCTTTTGGCT L V G S S L P R Q W L L W K T M L L L A - S A L L C L D N G C Y G R P C F F W L T S R L F S A S T M A A M E D H A S F G . . . . . . 86675 GCTCGTGAGCCCAACACATGATAAAATAAACCTTCCTTTCTGCAGACTTGAGCTTCGTTT A R E P N T - - N K P S F L Q T - A S F L V S P T H D K I N L P F C R L E L R F C S - A Q H M I K - T F L S A D L S F V . . . . . . 86615 TCATTTCAGAACTTTTGGACTTGCAGTACTTCTCCGACTTCAAATCCTTCTCTGCGTGTT S F Q N F W T C S T S P T S N P S L R V H F R T F G L A V L L R L Q I L L C V L F I S E L L D L Q Y F S D F K S F S A C . . . . . . 86555 GGATTAGTCTCCTTAGGTCACAAAGCAGGCAAACTACGGCTGGAGTATCAAGATGAAGAA G L V S L G H K A G K L R L E Y Q D E E D - S P - V T K Q A N Y G W S I K M K K W I S L L R S Q S R Q T T A G V S R - R . . . . . . 86495 GGGTTATTGTGTCGTTGATTAGCCCCAATGCGAATTGCAGGCCCCCCGTGTGTCTGAAGG G L L C R - L A P M R I A G P P C V - R G Y C V V D - P Q C E L Q A P R V S E G R V I V S L I S P N A N C R P P V C L K . . . . . . 86435 CTGATGAGCATGTTTGCTCCATGCAGTGGGATAGAGCTTCCAGGACTGTCTCTGGCTGCC L M S M F A P C S G I E L P G L S L A A - - A C L L H A V G - S F Q D C L W L P A D E H V C S M Q W D R A S R T V S G C . . . . . . 86375 CCCCTTGACCAAGAACAGAAGAGACGCTCAACAAAACTGTGGCTGATCCTACGGGATCTG P L D Q E Q K R R S T K L W L I L R D L P L T K N R R D A Q Q N C G - S Y G I - P P - P R T E E T L N K T V A D P T G S . . . . . . 86315 ATTGCCAGTCACCATTGTAGAGGCGAAGAGTAAAGCAATAACTGTACATGATGTCAACAA I A S H H C R G E E - S N N C T - C Q Q L P V T I V E A K S K A I T V H D V N K D C Q S P L - R R R V K Q - L Y M M S T . . . . . 86255 GGTGAACAGCCAGTAAAGGGGATGGCCCAGCTGCACTGAGCTTTCT G E Q P V K G M A Q L H - A F V N S Q - R G W P S C T E L S R - T A S K G D G P A A L S F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-10_AGS-1_PPS_1 (86898 86668) (frame '0'; 228 bp, 76 residues) 1 SELNIFASIT DLVLSAAACH AEGTDSYSTS LIRGLPSLCT FVIFGTLVLL PTNSTSRLFS 61 ASTMAAMEDH ASFGCS- PGL 11 (+ strand): 87415 95663 AGS-1 (87415 88319,90240 90410,90509 90712,90905 91153,93951 93974) SCR (e 1.000 d 1.000 a 0.970,e 1.000 d 1.000 a 0.781,e 1.000 d 0.972 a 1.000,e 1.000 d 0.000 a 0.000,e 0.708) Exon 1 87415 88319 ( 905 n); score: 1.000 Intron 1 88320 90239 (1920 n); Pd: 1.000 Pa: 0.970 Exon 2 90240 90410 ( 171 n); score: 1.000 Intron 2 90411 90508 ( 98 n); Pd: 1.000 Pa: 0.781 Exon 3 90509 90712 ( 204 n); score: 1.000 Intron 3 90713 90904 ( 192 n); Pd: 0.972 Pa: 1.000 Exon 4 90905 91153 ( 249 n); score: 1.000 Intron 4 91154 93950 (2797 n); Pd: 0.000 Pa: 0.000 Exon 5 93951 93974 ( 24 n); score: 0.708 PGS (87415 88245) SGN-U321050+ PGS (88220 88319,90240 90410,90509 90712,90905 91134) SGN-U324298+ PGS (90393 90410,90509 90712,90905 91153,93951 93974) SGN-U324299+ 3-phase translation of AGS-1 (+strand): . . . . . . 87415 TTTTCTTTTATTGTCATTTCATAGAACAGTTAGAGAGCAATCATCGGAAAATTCTTAATG F S F I V I S - N S - R A I I G K F L M F L L L S F H R T V R E Q S S E N S - - F F Y C H F I E Q L E S N H R K I L N . . . . . . 87475 AACACATAACAAGCAAAAACTTTCACCGGAAAATTGTAGAGGAATCGGAAAAAATGGGTG N T - Q A K T F T G K L - R N R K K W V T H N K Q K L S P E N C R G I G K N G - E H I T S K N F H R K I V E E S E K M G . . . . . . 87535 ATGTAGCCGATAAGATAGCATATTTTCAAGCGATCACCGGGGTGGAAGACACCGATTTGT M - P I R - H I F K R S P G W K T P I C C S R - D S I F S S D H R G G R H R F V D V A D K I A Y F Q A I T G V E D T D L . . . . . . 87595 GCACTGAGATCCTCGCCGCCCATGGCTGGGATCTCGAACTGGCGATCTCTGTTTTTACCT A L R S S P P M A G I S N W R S L F L P H - D P R R P W L G S R T G D L C F Y L C T E I L A A H G W D L E L A I S V F T . . . . . . 87655 CGCAAAATCACCATCCTGCTACTGAGTATGCATCCGAACCCACCACCTCCGATACACCAC R K I T I L L L S M H P N P P P P I H H A K S P S C Y - V C I R T H H L R Y T T S Q N H H P A T E Y A S E P T T S D T P . . . . . . 87715 CAACGAGCACGAATCAACCACCGGCAGAAACTGGGCTCGTTGCCGGTGGCAGCGGCGGAC Q R A R I N H R Q K L G S L P V A A A D N E H E S T T G R N W A R C R W Q R R T P T S T N Q P P A E T G L V A G G S G G . . . . . . 87775 CGCCGGGATTAGCTTGGAAGATTATTACTCTCCCCTTCTCCATCATTTCTGGCAGTCTAG R R D - L G R L L L S P S P S F L A V - A G I S L E D Y Y S P L L H H F W Q S R P P G L A W K I I T L P F S I I S G S L . . . . . . 87835 GATTGATTTCAGGTGCTGTGGGGTTGGGTGTATGGGCGGCAGGTGGTGTACTTTCGTATT D - F Q V L W G W V Y G R Q V V Y F R I I D F R C C G V G C M G G R W C T F V F G L I S G A V G L G V W A A G G V L S Y . . . . . . 87895 CGTTGAGAATGATCGGTTTCAATTTGGGGCGAAATAGTGAATCCTCTTCACCTTTGGTAT R - E - S V S I W G E I V N P L H L W Y V E N D R F Q F G A K - - I L F T F G I S L R M I G F N L G R N S E S S S P L V . . . . . . 87955 CTGTAACTGCATCAGCAGCGGAGGCAATGAGTTTCGTGGATAGTTTTGATAGGGATTTTG L - L H Q Q R R Q - V S W I V L I G I L C N C I S S G G N E F R G - F - - G F W S V T A S A A E A M S F V D S F D R D F . . . . . . 88015 GGAGTATTAGGCCGAGTTTTATTGCTGAAGGTTTTATGGATGCTTTGCAGAGGTCTAGGC G V L G R V L L L K V L W M L C R G L G E Y - A E F Y C - R F Y G C F A E V - A G S I R P S F I A E G F M D A L Q R S R . . . . . . 88075 ATGAGTTCAAGCTGTTTTTTGTGTATTTACATTCGCCTGAGCATCCAGATACCCCTGTGT M S S S C F L C I Y I R L S I Q I P L C - V Q A V F C V F T F A - A S R Y P C V H E F K L F F V Y L H S P E H P D T P V . . . . . . 88135 TTTGTGAAAGGACTTTGTGTAATGAAGCATTGGTAGCATTTATCAATGAGAATTTTGTTG F V K G L C V M K H W - H L S M R I L L L - K D F V - - S I G S I Y Q - E F C C F C E R T L C N E A L V A F I N E N F V . . . . . . 88195 CTTGGGGCGGGAGTATTAGAGCTAGTGAGGGTTTCAAGATGAGTAATAGCTTGAAGGCAT L G A G V L E L V R V S R - V I A - R H L G R E Y - S - - G F Q D E - - L E G I A W G G S I R A S E G F K M S N S L K A . . . . . . 88255 CAAGGTTTCCTTTTTGTGCTGTTGTAATGGCTGCGACAAACCAAAGGATTGCTCTGCTTC Q G F L F V L L - W L R Q T K G L L C F K V S F L C C C N G C D K P K D C S A S S R F P F C A V V M A A T N Q R I A L L . : . . . . . 88315 AGCAG : GTTGAGGGGCCAAAATCTCCTGATGAACTGCTTACTGCACTTCAAAGGGTGCTCG S R : L R G Q N L L M N C L L H F K G C S A : G - G A K I S - - T A Y C T S K G A R Q Q : V E G P K S P D E L L T A L Q R V L . . . . . . 90295 AGGAAAGTGCACCTGTGCTTGTTTCTGCCAGGCTTGAAGCAGAAGAAAGGAGAAATAATA R K V H L C L F L P G L K Q K K G E I I G K C T C A C F C Q A - S R R K E K - Y E E S A P V L V S A R L E A E E R R N N . . . . . . : 90355 TTAGACTAAGAGAGGAGCAGGATGCTGCTTATCGTGCTGCACTAGAGGCTGATCAG : GCTA L D - E R S R M L L I V L H - R L I R : L - T K R G A G C C L S C C T R G - S : G - I R L R E E Q D A A Y R A A L E A D Q : A . . . . . . 90513 GAGAGCGTCAGAGGCAAGAAGAGCAAGAGCGGCAGGAAAGGGAAGCTGCTGAAGCTGAAA E S V R G K K S K S G R K G K L L K L K R A S E A R R A R A A G K G S C - S - K R E R Q R Q E E Q E R Q E R E A A E A E . . . . . . 90573 GGAAAAGAAAGGAGGAAGAAGAGGCTCGTGAAAGAGCAGCTCGTGAAGCTGCTGAAAGAG G K E R R K K R L V K E Q L V K L L K E E K K G G R R G S - K S S S - S C - K R R K R K E E E E A R E R A A R E A A E R . . . . . . 90633 AAGCTGCATTGGCTAAAATGCGCGAGGAGAAATTACAGTCACTGGGCCCTGAACCTGCAA K L H W L K C A R R N Y S H W A L N L Q S C I G - N A R G E I T V T G P - T C K E A A L A K M R E E K L Q S L G P E P A . . : . . . . 90693 AGGGTCCCGATGTTACTCAA : GTTTTGGTAAGGTTTCCTACTGGTGAGCGCAAAGAGAGAA R V P M L L K : F W - G F L L V S A K R E G S R C Y S : S F G K V S Y W - A Q R E K K G P D V T Q : V L V R F P T G E R K E R . . . . . . 90945 GATTTCAATGTAGTACAACTATACAATCTCTGTATGACTATGTTGATTCTCTTGGATGCC D F N V V Q L Y N L C M T M L I L L D A I S M - Y N Y T I S V - L C - F S W M P R F Q C S T T I Q S L Y D Y V D S L G C . . . . . . 91005 TAGAGGTTGAAAAGTACAGTCTCGTGTCCAACTTCCCTCGTACAGTCTATGGCTCAGAGA - R L K S T V S C P T S L V Q S M A Q R R G - K V Q S R V Q L P S Y S L W L R E L E V E K Y S L V S N F P R T V Y G S E . . . . . . 91065 AGCTCGCTCTGTCGTTGAAAGATGCTGGATTACACCCTCAGGCCAGCCTTTTTGTTGAGT S S L C R - K M L D Y T L R P A F L L S A R S V V E R C W I T P S G Q P F C - V K L A L S L K D A G L H P Q A S L F V E . . . : . . . 91125 TGAACTCATGAGAACGATTGCTGTCTTGT : ATTGGGCTAGACAAATTCTCCAAG - T H E N D C C L V : L G - T N S P E L M R T I A V L : Y W A R Q I L Q L N S - E R L L S C : I G L D K F S K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-11_AGS-1_PPS_1 (87417 88319,90240 90410,90509 90712,90905 91135) (frame '0'; 1506 bp, 502 residues) 1 FFYCHFIEQL ESNHRKILNE HITSKNFHRK IVEESEKMGD VADKIAYFQA ITGVEDTDLC 61 TEILAAHGWD LELAISVFTS QNHHPATEYA SEPTTSDTPP TSTNQPPAET GLVAGGSGGP 121 PGLAWKIITL PFSIISGSLG LISGAVGLGV WAAGGVLSYS LRMIGFNLGR NSESSSPLVS 181 VTASAAEAMS FVDSFDRDFG SIRPSFIAEG FMDALQRSRH EFKLFFVYLH SPEHPDTPVF 241 CERTLCNEAL VAFINENFVA WGGSIRASEG FKMSNSLKAS RFPFCAVVMA ATNQRIALLQ 301 QVEGPKSPDE LLTALQRVLE ESAPVLVSAR LEAEERRNNI RLREEQDAAY RAALEADQAR 361 ERQRQEEQER QEREAAEAER KRKEEEEARE RAAREAAERE AALAKMREEK LQSLGPEPAK 421 GPDVTQVLVR FPTGERKERR FQCSTTIQSL YDYVDSLGCL EVEKYSLVSN FPRTVYGSEK 481 LALSLKDAGL HPQASLFVEL NS- AGS-2 (92081 92525) SCR (e 0.993) Exon 1 92081 92525 ( 445 n); score: 0.993 PGS (92081 92525) SGN-U331280+ 3-phase translation of AGS-2 (+strand): . . . . . . 92081 TATTAACCCTTTAACTCAAAAACTGCCATTTTTCCAGCTGCTTCTCTCTTCTCCATTCCC Y - P F N S K T A I F P A A S L F S I P I N P L T Q K L P F F Q L L L S S P F P L T L - L K N C H F S S C F S L L H S . . . . . . 92141 CTAAATTCTCTATTAACAAACTATGATTTTTTAGGGATTTTGAGATTTGTTTGCCCTAAT L N S L L T N Y D F L G I L R F V C P N - I L Y - Q T M I F - G F - D L F A L I P K F S I N K L - F F R D F E I C L P - . . . . . . 92201 TAGCTATATGCGTTTCAATACTGTGTCCGATTGTTAATCAGTTGAATTCTTCAAATGGGG - L Y A F Q Y C V R L L I S - I L Q M G S Y M R F N T V S D C - S V E F F K W G L A I C V S I L C P I V N Q L N S S N G . . . . . . 92261 GTTCTCAATTTTTCCGGTTTAATTTTGCTGAAAGCTGAGCTTTTTCAATTCCAATTCCGA V L N F S G L I L L K A E L F Q F Q F R F S I F P V - F C - K L S F F N S N S D G S Q F F R F N F A E S - A F S I P I P . . . . . . 92321 TTTGGAAGAGTTATTGATTCCTATTCTGTCGCCTGTGAAGCATTTTCTGAACCTTTTCTT F G R V I D S Y S V A C E A F S E P F L L E E L L I P I L S P V K H F L N L F F I W K S Y - F L F C R L - S I F - T F S . . . . . . 92381 TGATTTCATTAATTTTCTTCTTCTCTAGGTTTACTTCTTTTTTTGTGTTATTTTTTTTTG - F H - F S S S L G L L L F L C Y F F L D F I N F L L L - V Y F F F C V I F F C L I S L I F F F S R F T S F F V L F F F . . . . . . 92441 TTTCTGGGTGTGGAGAGATGAATTCTGCCTGTTCTTGGTTTGAAAAAGTGAAATTAGATG F L G V E R - I L P V L G L K K - N - M F W V W R D E F C L F L V - K S E I R - V S G C G E M N S A C S W F E K V K L D . . . 92501 AACCTGAAATTGTTGAAGTGTCACC N L K L L K C H T - N C - S V T E P E I V E V S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 92525 GGTGACACTTCAACAATTTCAGGTTCATCTAATTTCACTTTTTCAAACCAAGAACAGGCA G D T S T I S G S S N F T F S N Q E Q A V T L Q Q F Q V H L I S L F Q T K N R Q - H F N N F R F I - F H F F K P R T G . . . . . . 92465 GAATTCATCTCTCCACACCCAGAAACAAAAAAAAATAACACAAAAAAAGAAGTAAACCTA E F I S P H P E T K K N N T K K E V N L N S S L H T Q K Q K K I T Q K K K - T - R I H L S T P R N K K K - H K K R S K P . . . . . . 92405 GAGAAGAAGAAAATTAATGAAATCAAAGAAAAGGTTCAGAAAATGCTTCACAGGCGACAG E K K K I N E I K E K V Q K M L H R R Q R R R K L M K S K K R F R K C F T G D R R E E E N - - N Q R K G S E N A S Q A T . . . . . . 92345 AATAGGAATCAATAACTCTTCCAAATCGGAATTGGAATTGAAAAAGCTCAGCTTTCAGCA N R N Q - L F Q I G I G I E K A Q L S A I G I N N S S K S E L E L K K L S F Q Q E - E S I T L P N R N W N - K S S A F S . . . . . . 92285 AAATTAAACCGGAAAAATTGAGAACCCCCATTTGAAGAATTCAACTGATTAACAATCGGA K L N R K N - E P P F E E F N - L T I G N - T G K I E N P H L K N S T D - Q S D K I K P E K L R T P I - R I Q L I N N R . . . . . . 92225 CACAGTATTGAAACGCATATAGCTAATTAGGGCAAACAAATCTCAAAATCCCTAAAAAAT H S I E T H I A N - G K Q I S K S L K N T V L K R I - L I R A N K S Q N P - K I T Q Y - N A Y S - L G Q T N L K I P K K . . . . . . 92165 CATAGTTTGTTAATAGAGAATTTAGGGGAATGGAGAAGAGAGAAGCAGCTGGAAAAATGG H S L L I E N L G E W R R E K Q L E K W I V C - - R I - G N G E E R S S W K N G S - F V N R E F R G M E K R E A A G K M . . . 92105 CAGTTTTTGAGTTAAAGGGTTAATA Q F L S - R V N S F - V K G L I A V F E L K G - Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-11_AGS-2_PPS_1 (92525 92331) (frame '1'; 192 bp, 64 residues) 1 GDTSTISGSS NFTFSNQEQA EFISPHPETK KNNTKKEVNL EKKKINEIKE KVQKMLHRRQ 61 NRNQ- AGS-3 (92992 93058) SCR (e 0.940) Exon 1 92992 93058 ( 67 n); score: 0.940 PGS (92992 93058) SGN-U340745- 3-phase translation of AGS-3 (+strand): . . . . . . 92992 GTAAGGTTTATTAATCAACAAAGCAAAAATAAAATTCTTAAAAGATGAGATAAATTCAGA V R F I N Q Q S K N K I L K R - D K F R - G L L I N K A K I K F L K D E I N S E K V Y - S T K Q K - N S - K M R - I Q . 93052 AGCACTT S T A L K H Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 93058 AAGTGCTTCTGAATTTATCTCATCTTTTAAGAATTTTATTTTTGCTTTGTTGATTAATAA K C F - I Y L I F - E F Y F C F V D - - S A S E F I S S F K N F I F A L L I N K V L L N L S H L L R I L F L L C - L I . 92998 ACCTTAC T L P Y N L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (93602 93806,93907 94127,94217 94374,94460 94853,94931 95663) SCR (e 0.990 d 0.783 a 0.789,e 1.000 d 0.929 a 0.998,e 1.000 d 0.077 a 0.995,e 1.000 d 0.919 a 0.993,e 0.986) Exon 1 93602 93806 ( 205 n); score: 0.990 Intron 1 93807 93906 ( 100 n); Pd: 0.783 Pa: 0.789 Exon 2 93907 94127 ( 221 n); score: 1.000 Intron 2 94128 94216 ( 89 n); Pd: 0.929 Pa: 0.998 Exon 3 94217 94374 ( 158 n); score: 1.000 Intron 3 94375 94459 ( 85 n); Pd: 0.077 Pa: 0.995 Exon 4 94460 94853 ( 394 n); score: 1.000 Intron 4 94854 94930 ( 77 n); Pd: 0.919 Pa: 0.993 Exon 5 94931 95663 ( 733 n); score: 0.986 PGS (93602 93806,93907 94127,94217 94374,94460 94853,94931 95663) SGN-U322994+ 3-phase translation of AGS-4 (+strand): . . . . . . 93602 ATGGAATAGAAGTTGCCTGGAATCAAATTTGCATAGATGATGCTTTGCAGTCGCCTGAAC M E - K L P G I K F A - M M L C S R L N W N R S C L E S N L H R - C F A V A - T G I E V A W N Q I C I D D A L Q S P E . . . . . . 93662 ATTTGGAGAGAACATATTCCGAGGTTCACTTGTTGAAAATGTTGAAGAATGAGAACGTTA I W R E H I P R F T C - K C - R M R T L F G E N I F R G S L V E N V E E - E R Y H L E R T Y S E V H L L K M L K N E N V . . . . . . 93722 TAAAATTATATACTTCATGGGTGGACGATGTGAACAAAAGTATTAATATGATCACCGAAT - N Y I L H G W T M - T K V L I - S P N K I I Y F M G G R C E Q K Y - Y D H R I I K L Y T S W V D D V N K S I N M I T E . . . : . . . 93782 TATTTAGTTCAGGAAGCTTAAGGCA : CTATCGGACAAAGCATAAGACGGTTGACACTAAAG Y L V Q E A - G : T I G Q S I R R L T L K I - F R K L K A : L S D K A - D G - H - S L F S S G S L R H : Y R T K H K T V D T K . . . . . . 93942 CCATTAAACATTGGGCTAGACAAATTCTCCAAGGTTTACATTATCTCCATAGTCACAATC P L N I G L D K F S K V Y I I S I V T I H - T L G - T N S P R F T L S P - S Q S A I K H W A R Q I L Q G L H Y L H S H N . . . . . . 94002 CACCGGTTATACATAGAGACTTGAAATGTGACAATATATTCATCAATGGAAACCATGGAG H R L Y I E T - N V T I Y S S M E T M E T G Y T - R L E M - Q Y I H Q W K P W R P P V I H R D L K C D N I F I N G N H G . . . . . . 94062 AAGTTAAACTTGGAGATCTTGGATTGGCGACAATTATGGAGCAACCTACTGTTCGAAGTG K L N L E I L D W R Q L W S N L L F E V S - T W R S W I G D N Y G A T Y C S K C E V K L G D L G L A T I M E Q P T V R S . : . . . . . 94122 TTATTG : GTACCCCTGAATTTATGGCGCCTGAGCTATATGATGAAGAATATAATGAACTTG L L : V P L N L W R L S Y M M K N I M N L Y W : Y P - I Y G A - A I - - R I - - T C V I : G T P E F M A P E L Y D E E Y N E L . . . . . . 94271 TTGACATTTATTCTTTTGGCATGTGCATCTTGGAGCTAATAACATGTGAATATCCATATA L T F I L L A C A S W S - - H V N I H I - H L F F W H V H L G A N N M - I S I - V D I Y S F G M C I L E L I T C E Y P Y . . . . . : . 94331 ATGAGTGTAGAAATCAAGCACAAATTTATAAGAAAGTCACGTCG : GGAATAAAGCCAGCGT M S V E I K H K F I R K S R R : E - S Q R - V - K S S T N L - E S H V : G N K A S V N E C R N Q A Q I Y K K V T S : G I K P A . . . . . . 94476 CTTTAGCAAAAGTAGCAGATCCTCATGTAAAACAATTTGTCGAGAAATGTTTGGCCCCAG L - Q K - Q I L M - N N L S R N V W P Q F S K S S R S S C K T I C R E M F G P S S L A K V A D P H V K Q F V E K C L A P . . . . . . 94536 TATCAGTAAGATTGAGTGCAGCTGAACTTTTGGAAGACCCGTTTCTTTCATCTGAGAGCT Y Q - D - V Q L N F W K T R F F H L R A I S K I E C S - T F G R P V S F I - E L V S V R L S A A E L L E D P F L S S E S . . . . . . 94596 TGAAAACCCCCGCATGTGATCATTTGCAGCCCACAAATTTTGTGCCTGAAGCACAAAGCT - K P P H V I I C S P Q I L C L K H K A E N P R M - S F A A H K F C A - S T K L L K T P A C D H L Q P T N F V P E A Q S . . . . . . 94656 TGCCAAAGTCGATTTTCATGGATGTAGACCTTGCACAAAAGATGCACAGTGGCATGTCCA C Q S R F S W M - T L H K R C T V A C P A K V D F H G C R P C T K D A Q W H V H L P K S I F M D V D L A Q K M H S G M S . . . . . . 94716 TAGAAAGCAAGACTGCATCTCCTCATTTTTCTAATCTAGAAATCGTGAGACGAAATGGGA - K A R L H L L I F L I - K S - D E M G R K Q D C I S S F F - S R N R E T K W E I E S K T A S P H F S N L E I V R R N G . . . . . . 94776 GAAACGAATTTAGGTTACAAGGTGACAAGCATGATGATCGTTCAATTGTGTTTTCACTGC E T N L G Y K V T S M M I V Q L C F H C K R I - V T R - Q A - - S F N C V F T A R N E F R L Q G D K H D D R S I V F S L . . : . . . . 94836 GAATAGCTGAATTGGCTG : GTCGGATCAGGCATGTGCACTTTGTATATTGTATTGATGCTG E - L N W L : V G S G M C T L Y I V L M L N S - I G W : S D Q A C A L C I L Y - C - R I A E L A : G R I R H V H F V Y C I D A . . . . . . 94973 ACACTGTGATGTCAATAGCTAGTGAGATGGCAGAGGAGCTTGAGTTGTTGAATGACGATG T L - C Q - L V R W Q R S L S C - M T M H C D V N S - - D G R G A - V V E - R C D T V M S I A S E M A E E L E L L N D D . . . . . . 95033 TGGCAACAATAGCTGAATTGATTACCGACTTCATTTTCAAACTCTCAACAATCCAGAAAT W Q Q - L N - L P T S F S N S Q Q S R N G N N S - I D Y R L H F Q T L N N P E I V A T I A E L I T D F I F K L S T I Q K . . . . . . 95093 ATTCTTTTGGGAGTTTGTCTGCAGTGAATAACTTATCCGATGATTCAACTTTGATAATCG I L L G V C L Q - I T Y P M I Q L - - S F F W E F V C S E - L I R - F N F D N R Y S F G S L S A V N N L S D D S T L I I . . . . . . 95153 AAGATCCTATTGTCTGTGAAGGCATTACATCTTTGAATCAAGGGATAGCATCAACCTCAG K I L L S V K A L H L - I K G - H Q P Q R S Y C L - R H Y I F E S R D S I N L R E D P I V C E G I T S L N Q G I A S T S . . . . . . 95213 ATGTGGAGTATAACAACGTTTTAAGGTCTCTTGGCAATGAGTCAGATAACATCAATGTCC M W S I T T F - G L L A M S Q I T S M S C G V - Q R F K V S W Q - V R - H Q C P D V E Y N N V L R S L G N E S D N I N V . . . . . . 95273 ACACTCAAAGCAACAGTAAGGGGAGTCTAGGTGATGCTGTAATGAGTGATTGTACCACCA T L K A T V R G V - V M L - - V I V P P H S K Q Q - G E S R - C C N E - L Y H Q H T Q S N S K G S L G D A V M S D C T T . . . . . . 95333 AAACTTCAGGGATCTCCTCTGATAGCTTGCTGAATGTCATATCTAATGATTTCAGTTCTA K L Q G S P L I A C - M S Y L M I S V L N F R D L L - - L A E C H I - - F Q F - K T S G I S S D S L L N V I S N D F S S . . . . . . 95393 ACTCTCTTATCAACGGGGCAAATGACAAAAATCAATTGCACGATCTGAAGTCGGAACTTG T L L S T G Q M T K I N C T I - S R N L L S Y Q R G K - Q K S I A R S E V G T - N S L I N G A N D K N Q L H D L K S E L . . . . . . 95453 ATGCCATTGATATGCAGTATCAACAATCTTGTCGTGAACTCTTGAGAATGAGAGAGGAGG M P L I C S I N N L V V N S - E - E R R C H - Y A V S T I L S - T L E N E R G G D A I D M Q Y Q Q S C R E L L R M R E E . . . . . . 95513 CAATTGAAAATGCTAGAAAGAAGTGGACTGGTAAAAATAAAATATGTACTTAGCTTGTTC Q L K M L E R S G L V K I K Y V L S L F N - K C - K E V D W - K - N M Y L A C S A I E N A R K K W T G K N K I C T - L V . . . . . . 95573 AATTTTGTTTTAGAGCTACTGTTTGGTACGTATTTTGGTTTTACTTCATTCTTTATCAAA N F V L E L L F G T Y F G F T S F F I K I L F - S Y C L V R I L V L L H S L S N Q F C F R A T V W Y V F W F Y F I L Y Q . . . . 95633 CCACCTAACAGTGTCAATGAAGTGAATTGTT P P N S V N E V N C H L T V S M K - I V T T - Q C Q - S E L Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-11_AGS-4_PPS_1 (93604 93806,93907 94127,94217 94374,94460 94853,94931 95565) (frame '0'; 1608 bp, 536 residues) 1 GIEVAWNQIC IDDALQSPEH LERTYSEVHL LKMLKNENVI KLYTSWVDDV NKSINMITEL 61 FSSGSLRHYR TKHKTVDTKA IKHWARQILQ GLHYLHSHNP PVIHRDLKCD NIFINGNHGE 121 VKLGDLGLAT IMEQPTVRSV IGTPEFMAPE LYDEEYNELV DIYSFGMCIL ELITCEYPYN 181 ECRNQAQIYK KVTSGIKPAS LAKVADPHVK QFVEKCLAPV SVRLSAAELL EDPFLSSESL 241 KTPACDHLQP TNFVPEAQSL PKSIFMDVDL AQKMHSGMSI ESKTASPHFS NLEIVRRNGR 301 NEFRLQGDKH DDRSIVFSLR IAELAGRIRH VHFVYCIDAD TVMSIASEMA EELELLNDDV 361 ATIAELITDF IFKLSTIQKY SFGSLSAVNN LSDDSTLIIE DPIVCEGITS LNQGIASTSD 421 VEYNNVLRSL GNESDNINVH TQSNSKGSLG DAVMSDCTTK TSGISSDSLL NVISNDFSSN 481 SLINGANDKN QLHDLKSELD AIDMQYQQSC RELLRMREEA IENARKKWTG KNKICT- PGL 12 (+ strand): 97074 99058 AGS-1 (97074 97926,98005 98102,98685 99058) SCR (e 1.000 d 0.996 a 0.970,e 1.000 d 1.000 a 0.907,e 0.995) Exon 1 97074 97926 ( 853 n); score: 1.000 Intron 1 97927 98004 ( 78 n); Pd: 0.996 Pa: 0.970 Exon 2 98005 98102 ( 98 n); score: 1.000 Intron 2 98103 98684 ( 582 n); Pd: 1.000 Pa: 0.907 Exon 3 98685 99058 ( 374 n); score: 0.995 PGS (97074 97926,98005 98102,98685 99058) SGN-U322380+ 3-phase translation of AGS-1 (+strand): . . . . . . 97074 TCTTCTCTCTCTCTGTACTATTCAAGCATTCACCTAATCCAATAATACAGAAACAAAAAA S S L S L Y Y S S I H L I Q - Y R N K K L L S L C T I Q A F T - S N N T E T K K F S L S V L F K H S P N P I I Q K Q K . . . . . . 97134 AAAAAGATTCTCCAAAATTTGAATGCAAATATATAGGTAAGAGGTAATAATTCATACATA K K I L Q N L N A N I - V R G N N S Y I K R F S K I - M Q I Y R - E V I I H T Y K K D S P K F E C K Y I G K R - - F I H . . . . . . 97194 TCATTTGTCACATACAAAAAAGAAAAAAGAAAAAAATTCAACCAATGGAAGAATCTGCAT S F V T Y K K E K R K K F N Q W K N L H H L S H T K K K K E K N S T N G R I C I I I C H I Q K R K K K K I Q P M E E S A . . . . . . 97254 CAGAAATCAAGACTCCTCTGTGTAAGACTCTTTTTTCTCCAACACAATTTAATTCTTTAA Q K S R L L C V R L F F L Q H N L I L - R N Q D S S V - D S F F S N T I - F F K S E I K T P L C K T L F S P T Q F N S L . . . . . . 97314 AAATGTCGATATTAGATCCTAAAAAAACGAATCAGTTCTCACACGTTGTAACAACATTTA K C R Y - I L K K R I S S H T L - Q H L N V D I R S - K N E S V L T R C N N I Y K M S I L D P K K T N Q F S H V V T T F . . . . . . 97374 TGAAAGGATCCGAAAGGTGTATTTCAGATCCAAAACTGAAATCTCTCTCTGTTTTGTAGT - K D P K G V F Q I Q N - N L S L F C S E R I R K V Y F R S K T E I S L C F V V M K G S E R C I S D P K L K S L S V L - . . . . . . 97434 ATCCAATTTTGATCATGGCATTGCATCAAGCTCTAATGTTAAAGTCCACAAGGATGATGA I Q F - S W H C I K L - C - S P Q G - - S N F D H G I A S S S N V K V H K D D E Y P I L I M A L H Q A L M L K S T R M M . . . . . . 97494 AGATGAAAATTCTCCTGTCGAACAAGTTGCTCTTACTGTTCCAACAACTGATGATCCTTC R - K F S C R T S C S Y C S N N - - S F D E N S P V E Q V A L T V P T T D D P S K M K I L L S N K L L L L F Q Q L M I L . . . . . . 97554 ATTACCTGTTTTAACTTTTCGAATGTGGTTTTTAGGGACAGTTTCTTGTGTTTTGTTATC I T C F N F S N V V F R D S F L C F V I L P V L T F R M W F L G T V S C V L L S H Y L F - L F E C G F - G Q F L V F C Y . . . . . . 97614 ATTTCTGAACCAATTCTTTTGGTACAGAACAGAGCCATTGACAATTACAGCAATTTCAGC I S E P I L L V Q N R A I D N Y S N F S F L N Q F F W Y R T E P L T I T A I S A H F - T N S F G T E Q S H - Q L Q Q F Q . . . . . . 97674 TCAAATAGCTGTGGTTCCTTTGGGTCAACTTATGGCTGCAAAGATAACAAAAAGGGTATT S N S C G S F G S T Y G C K D N K K G I Q I A V V P L G Q L M A A K I T K R V F L K - L W F L W V N L W L Q R - Q K G Y . . . . . . 97734 TTTGCAAGGATCTAAATGGGAATTCAGTTTAAATCCAGGCCCTTTTAATGTTAAAGAACA F A R I - M G I Q F K S R P F - C - R T L Q G S K W E F S L N P G P F N V K E H F C K D L N G N S V - I Q A L L M L K N . . . . . . 97794 TGTCCTCATCACCATTTTTGCAAATTCTGGTGCTGGAACTGTTTATGCTATTCATGTTGT C P H H H F C K F W C W N C L C Y S C C V L I T I F A N S G A G T V Y A I H V V M S S S P F L Q I L V L E L F M L F M L . . . . . . 97854 CACTGCTGTTAAAGTCTTTTATAAGAAAGACATTACCTTCTTTGTTTCTCTTATTGTTAT H C C - S L L - E R H Y L L C F S Y C Y T A V K V F Y K K D I T F F V S L I V I S L L L K S F I R K T L P S L F L L L L . . : . . . . 97914 CATCACAACACAG : GTGTTGGGATTTGGATGGGCTGGAATTTTCAGAAAGTACTTGGTTGA H H N T : G V G I W M G W N F Q K V L G - I T T Q : V L G F G W A G I F R K Y L V E S S Q H R : C W D L D G L E F S E S T W L . . . . . . : 98052 GCCAGCAGCCATGTGGTGGCCTTCCAATCTTGTCCAAGTCTCATTATTCAG : GGCTTTACA A S S H V V A F Q S C P S L I I Q : G F T P A A M W W P S N L V Q V S L F R : A L H S Q Q P C G G L P I L S K S H Y S : G L Y . . . . . . 98694 CGAGAAAGAAGAACGTTGTAAAGGAGGGCTAACGCGTACTCAGTTCTTTATAGTAGCCTT R E R R T L - R R A N A Y S V L Y S S L E K E E R C K G G L T R T Q F F I V A F T R K K N V V K E G - R V L S S L - - P . . . . . . 98754 TATCTGCAGTTTTGCATACTACATTTTCCCTGGATATCTCTTTTCAATGTTGACATCTTT Y L Q F C I L H F P W I S L F N V D I F I C S F A Y Y I F P G Y L F S M L T S L L S A V L H T T F S L D I S F Q C - H L . . . . . . 98814 GTCATGGATATGTTGGATCTTTCCCAAATCTGTGTTTGCCCAACAACTAGGTTCGGGCCT V M D M L D L S Q I C V C P T T R F G P S W I C W I F P K S V F A Q Q L G S G L C H G Y V G S F P N L C L P N N - V R A . . . . . . 98874 AAAGGGGCTTGGAATTGGAGCTATAGGCCTTGATTGGTCCTCTATTTCGTCCTACCTTGG K G A W N W S Y R P - L V L Y F V L P W K G L G I G A I G L D W S S I S S Y L G - R G L E L E L - A L I G P L F R P T L . . . . . . 98934 AAGCCCATTAGCTAGCCCATGGTTTGCTACAGCTAATGTTGCTGCTGGATTCATATTTGT K P I S - P M V C Y S - C C C W I H I C S P L A S P W F A T A N V A A G F I F V E A H - L A H G L L Q L M L L L D S Y L . . . . . . 98994 TATGTATGTTTTGACTCCAATATGTTACTGGTTAGATATCTTCAAAGCCAAAACATTCCC Y V C F D S N M L L V R Y L Q S Q N I P M Y V L T P I C Y W L D I F K A K T F P L C M F - L Q Y V T G - I S S K P K H S . 99054 AATTT N I Q F Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-12_AGS-1_PPS_1 (97336 97926,98005 98102,98685 99057) (frame '2'; 1062 bp, 354 residues) 1 KNESVLTRCN NIYERIRKVY FRSKTEISLC FVVSNFDHGI ASSSNVKVHK DDEDENSPVE 61 QVALTVPTTD DPSLPVLTFR MWFLGTVSCV LLSFLNQFFW YRTEPLTITA ISAQIAVVPL 121 GQLMAAKITK RVFLQGSKWE FSLNPGPFNV KEHVLITIFA NSGAGTVYAI HVVTAVKVFY 181 KKDITFFVSL IVIITTQVLG FGWAGIFRKY LVEPAAMWWP SNLVQVSLFR ALHEKEERCK 241 GGLTRTQFFI VAFICSFAYY IFPGYLFSML TSLSWICWIF PKSVFAQQLG SGLKGLGIGA 301 IGLDWSSISS YLGSPLASPW FATANVAAGF IFVMYVLTPI CYWLDIFKAK TFPI AGS-2 (97094 97274,97433 97926,98005 98102) SCR (e 0.967 d 0.996 a 0.716,e 0.898 d 0.996 a 0.970,e 0.633) Exon 1 97094 97274 ( 181 n); score: 0.967 Intron 1 97275 97432 ( 158 n); Pd: 0.996 Pa: 0.716 Exon 2 97433 97926 ( 494 n); score: 0.898 Intron 2 97927 98004 ( 78 n); Pd: 0.996 Pa: 0.970 Exon 3 98005 98102 ( 98 n); score: 0.633 PGS (97094 97274,97433 97926,98005 98102) SGN-U337591+ 3-phase translation of AGS-2 (+strand): . . . . . . 97094 TTCAAGCATTCACCTAATCCAATAATACAGAAACAAAAAAAAAAAGATTCTCCAAAATTT F K H S P N P I I Q K Q K K K D S P K F S S I H L I Q - Y R N K K K K I L Q N L Q A F T - S N N T E T K K K R F S K I . . . . . . 97154 GAATGCAAATATATAGGTAAGAGGTAATAATTCATACATATCATTTGTCACATACAAAAA E C K Y I G K R - - F I H I I C H I Q K N A N I - V R G N N S Y I S F V T Y K K - M Q I Y R - E V I I H T Y H L S H T K . . . . . . 97214 AGAAAAAAGAAAAAAATTCAACCAATGGAAGAATCTGCATCAGAAATCAAGACTCCTCTG R K K K K I Q P M E E S A S E I K T P L E K R K K F N Q W K N L H Q K S R L L C K K K E K N S T N G R I C I R N Q D S S . : . . . . . 97274 T : TATCCAATTTTGATCATGGCATTGCATCAAGCTCTAATGTTAAAGTCCACAAGGATGAT : L S N F D H G I A S S S N V K V H K D D : Y P I L I M A L H Q A L M L K S T R M M V : I Q F - S W H C I K L - C - S P Q G - . . . . . . 97492 GAAGATGAAAATTCTCCTGTCGAACAAGTTGCTCTTACTGTTCCAACAACTGATGATCCT E D E N S P V E Q V A L T V P T T D D P K M K I L L S N K L L L L F Q Q L M I L - R - K F S C R T S C S Y C S N N - - S . . . . . . 97552 TCATTACCTGTTTTAACTTTTCGAATGTGGTTTTTAGGGACAGTTTCTTGTGTTTTGTTA S L P V L T F R M W F L G T V S C V L L H Y L F - L F E C G F - G Q F L V F C Y F I T C F N F S N V V F R D S F L C F V . . . . . . 97612 TCATTTCTGAACCAATTCTTTTGGTACAGAACAGAGCCATTGACAATTACAGCAATTTCA S F L N Q F F W Y R T E P L T I T A I S H F - T N S F G T E Q S H - Q L Q Q F Q I I S E P I L L V Q N R A I D N Y S N F . . . . . . 97672 GCTCAAATAGCTGTGGTTCCTTTGGGTCAACTTATGGCTGCAAAGATAACAAAAAGGGTA A Q I A V V P L G Q L M A A K I T K R V L K - L W F L W V N L W L Q R - Q K G Y S S N S C G S F G S T Y G C K D N K K G . . . . . . 97732 TTTTTGCAAGGATCTAAATGGGAATTCAGTTTAAATCCAGGCCCTTTTAATGTTAAAGAA F L Q G S K W E F S L N P G P F N V K E F C K D L N G N S V - I Q A L L M L K N I F A R I - M G I Q F K S R P F - C - R . . . . . . 97792 CATGTCCTCATCACCATTTTTGCAAATTCTGGTGCTGGAACTGTTTATGCTATTCATGTT H V L I T I F A N S G A G T V Y A I H V M S S S P F L Q I L V L E L F M L F M L T C P H H H F C K F W C W N C L C Y S C . . . . . . 97852 GTCACTGCTGTTAAAGTCTTTTATAAGAAAGACATTACCTTCTTTGTTTCTCTTATTGTT V T A V K V F Y K K D I T F F V S L I V S L L L K S F I R K T L P S L F L L L L C H C C - S L L - E R H Y L L C F S Y C . . : . . . . 97912 ATCATCACAACACAG : GTGTTGGGATTTGGATGGGCTGGAATTTTCAGAAAGTACTTGGTT I I T T Q : V L G F G W A G I F R K Y L V S S Q H R : C W D L D G L E F S E S T W L Y H H N T : G V G I W M G W N F Q K V L G . . . . . . 98050 GAGCCAGCAGCCATGTGGTGGCCTTCCAATCTTGTCCAAGTCTCATTATTCAG E P A A M W W P S N L V Q V S L F S Q Q P C G G L P I L S K S H Y S - A S S H V V A F Q S C P S L I I Q Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-12_AGS-2_PPS_1 (97184 97274,97433 97926,98005 98100) (frame '1'; 681 bp, 227 residues) 1 FIHIICHIQK RKKKKIQPME ESASEIKTPL LSNFDHGIAS SSNVKVHKDD EDENSPVEQV 61 ALTVPTTDDP SLPVLTFRMW FLGTVSCVLL SFLNQFFWYR TEPLTITAIS AQIAVVPLGQ 121 LMAAKITKRV FLQGSKWEFS LNPGPFNVKE HVLITIFANS GAGTVYAIHV VTAVKVFYKK 181 DITFFVSLIV IITTQVLGFG WAGIFRKYLV EPAAMWWPSN LVQVSLF PGL 13 (+ strand): 102041 104841 AGS-1 (102041 102432,103636 103996,104425 104841) SCR (e 1.000 d 0.967 a 0.962,e 1.000 d 0.996 a 0.995,e 1.000) Exon 1 102041 102432 ( 392 n); score: 1.000 Intron 1 102433 103635 (1203 n); Pd: 0.967 Pa: 0.962 Exon 2 103636 103996 ( 361 n); score: 1.000 Intron 2 103997 104424 ( 428 n); Pd: 0.996 Pa: 0.995 Exon 3 104425 104841 ( 417 n); score: 1.000 PGS (102041 102432,103636 103996,104425 104841) SGN-U320870+ 3-phase translation of AGS-1 (+strand): . . . . . . 102041 GATAAGAAGAAAAGCTGAGTATGAAGAGCACATCAATTTCCTCATTACTTCCATATCCAA D K K K S - V - R A H Q F P H Y F H I Q I R R K A E Y E E H I N F L I T S I S K - E E K L S M K S T S I S S L L P Y P . . . . . . 102101 AAATCCTCTTCAGCAGAAGAGCATTTCCCCCAATTAATTTCTCAAGCACAGCTCCATTTT K S S S A E E H F P Q L I S Q A Q L H F N P L Q Q K S I S P N - F L K H S S I F K I L F S R R A F P P I N F S S T A P F . . . . . . 102161 CAGGGCAGGCAAAATTTCTAAGCATAAATTGCAGTAATAGCTCGGAAAATGGTGAAATGG Q G R Q N F - A - I A V I A R K M V K W R A G K I S K H K L Q - - L G K W - N G S G Q A K F L S I N C S N S S E N G E M . . . . . . 102221 GGAATTTGAAGGATGCATTGACTGGTATAGTGGACGAAAGAGTAGAGGAACTTTTGAAGA G I - R M H - L V - W T K E - R N F - R E F E G C I D W Y S G R K S R G T F E E G N L K D A L T G I V D E R V E E L L K . . . . . . 102281 GAGAAGAAAATAGGGTTTTACTTGATGGGTTGGAGAAAGCAACGCTGAGAGTAGAAATGG E K K I G F Y L M G W R K Q R - E - K W R R K - G F T - W V G E S N A E S R N G R E E N R V L L D G L E K A T L R V E M . . . . . . 102341 CAAAGAAAGAACTTGCTGAAATTGAAAGACAAGAATTGGAGGCTAAATTGCTAAAGGATT Q R K N L L K L K D K N W R L N C - R I K E R T C - N - K T R I G G - I A K G L A K K E L A E I E R Q E L E A K L L K D . . . . : . . 102401 ATATCACCCAGCTTGAAACTAGAACTTCTGAG : ATTGCAGAATGCCAGAAAGATATTTTAG I S P S L K L E L L R : L Q N A R K I F - Y H P A - N - N F - : D C R M P E R Y F R Y I T Q L E T R T S E : I A E C Q K D I L . . . . . . 103664 AAGCAAGAGCAATGATTGAAGAAGCTGAGCGTTCCCTCAACGTTAGTGGTGATGCTAGAA K Q E Q - L K K L S V P S T L V V M L E S K S N D - R S - A F P Q R - W - C - K E A R A M I E E A E R S L N V S G D A R . . . . . . 103724 AGAGAGATCCAACAGACGGAGATGTAGTGAATAGAGATGAGGAAAGAGTAGAATCCGTAA R E I Q Q T E M - - I E M R K E - N P - E R S N R R R C S E - R - G K S R I R K K R D P T D G D V V N R D E E R V E S V . . . . . . 103784 AAGCAGCTTCACTTTCTGCAATTGTTGGCACACTTGCAGGACTTCCCATTTTCTTAAGTC K Q L H F L Q L L A H L Q D F P F S - V S S F T F C N C W H T C R T S H F L K S K A A S L S A I V G T L A G L P I F L S . . . . . . 103844 GTATCTCCAGCAGTTCTGAGCTAATACTCCCTCTGTCAATCACATTTATTAGTTGTGCTT V S P A V L S - Y S L C Q S H L L V V L Y L Q Q F - A N T P S V N H I Y - L C F R I S S S S E L I L P L S I T F I S C A . . . . . . 103904 TGTTTGGTGTAACCTTCCGCTATGCTGTAAGAAGAGACTTCGATAATTTTCAACTCAAGT C L V - P S A M L - E E T S I I F N S S V W C N L P L C C K K R L R - F S T Q V L F G V T F R Y A V R R D F D N F Q L K . . . . : . . 103964 CAGGAACATCTGCAGCATTTGGCGTTGTCAAAG : GCCTTGCTACACTTGGAGGTGGACCAC Q E H L Q H L A L S K : A L L H L E V D H R N I C S I W R C Q R : P C Y T W R W T T S G T S A A F G V V K : G L A T L G G G P . . . . . . 104452 CATTGGAGTTGGATGCAGCCAGCTTCTGGTCCCATGCTCTTGATGGCGCAGTCTATGTCT H W S W M Q P A S G P M L L M A Q S M S I G V G C S Q L L V P C S - W R S L C L P L E L D A A S F W S H A L D G A V Y V . . . . . . 104512 CGGAGAATCTTTTGATCTTCCTTTTTGCTGGAGTTGGCCTGGATTTATGCTTTAAGCTGA R R I F - S S F L L E L A W I Y A L S - G E S F D L P F C W S W P G F M L - A E S E N L L I F L F A G V G L D L C F K L . . . . . . 104572 GGATTTTGAGCCCTTTTCCCATTGATAGATCAATTTCAGAGACGGATAAAAGCTAAACAT G F - A L F P L I D Q F Q R R I K A K H D F E P F S H - - I N F R D G - K L N I R I L S P F P I D R S I S E T D K S - T . . . . . . 104632 CTTGTTGCCTATTTATTACTTCTGAGTGTATATACAGAGACCCAGTAAATTAACTCTCTA L V A Y L L L L S V Y T E T Q - I N S L L L P I Y Y F - V Y I Q R P S K L T L - S C C L F I T S E C I Y R D P V N - L S . . . . . . 104692 ACAATTGCTTAGATAGAATTATACTTGAAAAGCGCCATTCACTGCAATTATCCATAAATT T I A - I E L Y L K S A I H C N Y P - I Q L L R - N Y T - K A P F T A I I H K F N N C L D R I I L E K R H S L Q L S I N . . . . . . 104752 CAGTAAAATATTGTCAGGTCAGTCACAGGAGACTAGTTTCAGAAGGGATAAAGCTGCACT Q - N I V R S V T G D - F Q K G - S C T S K I L S G Q S Q E T S F R R D K A A L S V K Y C Q V S H R R L V S E G I K L H . . . 104812 TCGAGTATCTTTCTGTCATTCAAGTTATCT S S I F L S F K L S R V S F C H S S Y F E Y L S V I Q V I Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-13_AGS-1_PPS_1 (102046 102432,103636 103996,104425 104627) (frame '0'; 948 bp, 316 residues) 1 EEKLSMKSTS ISSLLPYPKI LFSRRAFPPI NFSSTAPFSG QAKFLSINCS NSSENGEMGN 61 LKDALTGIVD ERVEELLKRE ENRVLLDGLE KATLRVEMAK KELAEIERQE LEAKLLKDYI 121 TQLETRTSEI AECQKDILEA RAMIEEAERS LNVSGDARKR DPTDGDVVNR DEERVESVKA 181 ASLSAIVGTL AGLPIFLSRI SSSSELILPL SITFISCALF GVTFRYAVRR DFDNFQLKSG 241 TSAAFGVVKG LATLGGGPPL ELDAASFWSH ALDGAVYVSE NLLIFLFAGV GLDLCFKLRI 301 LSPFPIDRSI SETDKS- AGS-2 (102280 102432,103605 103996,104425 104733) SCR (e 0.993 d 0.967 a 0.683,e 1.000 d 0.996 a 0.995,e 0.930) Exon 1 102280 102432 ( 153 n); score: 0.993 Intron 1 102433 103604 (1172 n); Pd: 0.967 Pa: 0.683 Exon 2 103605 103996 ( 392 n); score: 1.000 Intron 2 103997 104424 ( 428 n); Pd: 0.996 Pa: 0.995 Exon 3 104425 104733 ( 309 n); score: 0.930 PGS (102280 102432,103605 103996,104425 104733) SGN-U337240+ 3-phase translation of AGS-2 (+strand): . . . . . . 102280 AGAGAAGAAAATAGGGTTTTACTTGATGGGTTGGAGAAAGCAACGCTGAGAGTAGAAATG R E E N R V L L D G L E K A T L R V E M E K K I G F Y L M G W R K Q R - E - K W R R K - G F T - W V G E S N A E S R N . . . . . . 102340 GCAAAGAAAGAACTTGCTGAAATTGAAAGACAAGAATTGGAGGCTAAATTGCTAAAGGAT A K K E L A E I E R Q E L E A K L L K D Q R K N L L K L K D K N W R L N C - R I G K E R T C - N - K T R I G G - I A K G . . . . : . . 102400 TATATCACCCAGCTTGAAACTAGAACTTCTGAG : TTAAGGTACTGATTGGTTGATGCAATT Y I T Q L E T R T S E : L R Y - L V D A I I S P S L K L E L L S : - G T D W L M Q L L Y H P A - N - N F - : V K V L I G - C N . . . . . . 103632 GAAGATTGCAGAATGCCAGAAAGATATTTTAGAAGCAAGAGCAATGATTGAAGAAGCTGA E D C R M P E R Y F R S K S N D - R S - K I A E C Q K D I L E A R A M I E E A E - R L Q N A R K I F - K Q E Q - L K K L . . . . . . 103692 GCGTTCCCTCAACGTTAGTGGTGATGCTAGAAAGAGAGATCCAACAGACGGAGATGTAGT A F P Q R - W - C - K E R S N R R R C S R S L N V S G D A R K R D P T D G D V V S V P S T L V V M L E R E I Q Q T E M - . . . . . . 103752 GAATAGAGATGAGGAAAGAGTAGAATCCGTAAAAGCAGCTTCACTTTCTGCAATTGTTGG E - R - G K S R I R K S S F T F C N C W N R D E E R V E S V K A A S L S A I V G - I E M R K E - N P - K Q L H F L Q L L . . . . . . 103812 CACACTTGCAGGACTTCCCATTTTCTTAAGTCGTATCTCCAGCAGTTCTGAGCTAATACT H T C R T S H F L K S Y L Q Q F - A N T T L A G L P I F L S R I S S S S E L I L A H L Q D F P F S - V V S P A V L S - Y . . . . . . 103872 CCCTCTGTCAATCACATTTATTAGTTGTGCTTTGTTTGGTGTAACCTTCCGCTATGCTGT P S V N H I Y - L C F V W C N L P L C C P L S I T F I S C A L F G V T F R Y A V S L C Q S H L L V V L C L V - P S A M L . . . . . . 103932 AAGAAGAGACTTCGATAATTTTCAACTCAAGTCAGGAACATCTGCAGCATTTGGCGTTGT K K R L R - F S T Q V R N I C S I W R C R R D F D N F Q L K S G T S A A F G V V - E E T S I I F N S S Q E H L Q H L A L . : . . . . . 103992 CAAAG : GCCTTGCTACACTTGGAGGTGGACCACCATTGGAGTTGGATGCAGCCAGCTTCTG Q R : P C Y T W R W T T I G V G C S Q L L K : G L A T L G G G P P L E L D A A S F W S K : A L L H L E V D H H W S W M Q P A S . . . . . . 104480 GTCCCATGCTCTTGATGGCGCAGTCTATGTCTCGGAGAATCTTTTGATCTTCCTTTTTGC V P C S - W R S L C L G E S F D L P F C S H A L D G A V Y V S E N L L I F L F A G P M L L M A Q S M S R R I F - S S F L . . . . . . 104540 TGGAGTTGGCCTGGATTTATGCTTTAAGCTGAGGATTTTGAGCCCTTTTCCCATTGATAG W S W P G F M L - A E D F E P F S H - - G V G L D L C F K L R I L S P F P I D R L E L A W I Y A L S - G F - A L F P L I . . . . . . 104600 ATCAATTTCAGAGACGGATAAAAGCTAAACATCTTGTTGCCTATTTATTACTTCTGAGTG I N F R D G - K L N I L L P I Y Y F - V S I S E T D K S - T S C C L F I T S E C D Q F Q R R I K A K H L V A Y L L L L S . . . . . . 104660 TATATACAGAGACCCAGTAAATTAACTCTCTAACAATTGCTTAGATAGAATTATACTTGA Y I Q R P S K L T L - Q L L R - N Y T - I Y R D P V N - L S N N C L D R I I L E V Y T E T Q - I N S L T I A - I E L Y L . . 104720 AAAGCGCCATTCAC K A P F K R H S K S A I H Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-13_AGS-2_PPS_1 (103609 103996,104425 104627) (frame '2'; 588 bp, 196 residues) 1 GTDWLMQLKI AECQKDILEA RAMIEEAERS LNVSGDARKR DPTDGDVVNR DEERVESVKA 61 ASLSAIVGTL AGLPIFLSRI SSSSELILPL SITFISCALF GVTFRYAVRR DFDNFQLKSG 121 TSAAFGVVKG LATLGGGPPL ELDAASFWSH ALDGAVYVSE NLLIFLFAGV GLDLCFKLRI 181 LSPFPIDRSI SETDKS- PGL 14 (- strand): 105600 104855 AGS-1 (105600 105483,105399 105286,105185 104855) SCR (e 1.000 d 0.883 a 0.927,e 1.000 d 0.959 a 0.998,e 1.000) Exon 1 105600 105483 ( 118 n); score: 1.000 Intron 1 105482 105400 ( 83 n); Pd: 0.883 Pa: 0.927 Exon 2 105399 105286 ( 114 n); score: 1.000 Intron 2 105285 105186 ( 100 n); Pd: 0.959 Pa: 0.998 Exon 3 105185 104855 ( 331 n); score: 1.000 PGS (105600 105483,105399 105286,105185 104855) SGN-U330497+ 3-phase translation of AGS-1 (-strand): . . . . . . 105600 ACTTGCTGGCTTGTGTGAGGGATACACTGGTTCAGACATTCTTGAAGCCTGCAAGCAAGC T C W L V - G I H W F R H S - S L Q A S L A G L C E G Y T G S D I L E A C K Q A L L A C V R D T L V Q T F L K P A S K . . . . . . : 105540 TGCCTTTATTCCTCTTGGGGAGTATTTGCAAGATGAGAAGAAAGCAGAGCAATCACAG : GC C L Y S S W G V F A R - E E S R A I T : G A F I P L G E Y L Q D E K K A E Q S Q : A L P L F L L G S I C K M R R K Q S N H R : . . . . . . 105397 ACCAAGACCATTGTCTCAGTCTGATATAGAGAGAGCAGTGGCTGAATCAAAGAGGACCAG T K T I V S V - Y R E S S G - I K E D Q P R P L S Q S D I E R A V A E S K R T R H Q D H C L S L I - R E Q W L N Q R G P . . . . . . : 105337 GGTTTCTGCTAAGAAACCAACTATTGTGAGCTTTCGGTTGGATGATTATGAG : GATTTAGA G F C - E T N Y C E L S V G - L - : G F R V S A K K P T I V S F R L D D Y E : D L D G F L L R N Q L L - A F G W M I M R : I - . . . . . . 105177 CTGAGACTGGCTCCAGTTGATGACACACTTGACATCCGTTGAAGATATCATTCTTTAGGC L R L A P V D D T L D I R - R Y H S L G - D W L Q L M T H L T S V E D I I L - A T E T G S S - - H T - H P L K I S F F R . . . . . . 105117 GTGGCCCAGCCCTTTTTGAATCTCAATGCTCTAACCTGTTTAGGAATTGGAAGATATATA V A Q P F L N L N A L T C L G I G R Y I W P S P F - I S M L - P V - E L E D I - R G P A L F E S Q C S N L F R N W K I Y . . . . . . 105057 GGTCATTTAACTTGCATTGTTTCAATGTTGTAAATACCATGAACAAGTAAGTAGTCATTG G H L T C I V S M L - I P - T S K - S L V I - L A L F Q C C K Y H E Q V S S H C R S F N L H C F N V V N T M N K - V V I . . . . . . 104997 TTACAAGGTTCAGTTTAAATTTCTCCTCCACGAGCGTTTAGCTGCAGCACACTCATGTGG L Q G S V - I S P P R A F S C S T L M W Y K V Q F K F L L H E R L A A A H S C G V T R F S L N F S S T S V - L Q H T H V . . . . . . 104937 ACGCATCCCCATAGTTTTTTTGAAGACTATATCATGTAATATTGTTTGTTATTATAAAGG T H P H S F F E D Y I M - Y C L L L - R R I P I V F L K T I S C N I V C Y Y K G D A S P - F F - R L Y H V I L F V I I K . . . 104877 AATTGTCTTTGGAAATACCCCAA N C L W K Y P I V F G N T P E L S L E I P Q Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-14_AGS-1_PPS_1 (105599 105483,105399 105286,105185 105174) (frame '2'; 240 bp, 80 residues) 1 LAGLCEGYTG SDILEACKQA AFIPLGEYLQ DEKKAEQSQA PRPLSQSDIE RAVAESKRTR 61 VSAKKPTIVS FRLDDYEDLD - >C08SLm0006K11.1-_PGL-14_AGS-1_PPS_2 (105047 104856) (frame '2'; 192 bp, 64 residues) 1 LALFQCCKYH EQVSSHCYKV QFKFLLHERL AAAHSCGRIP IVFLKTISCN IVCYYKGIVF 61 GNTP PGL 15 (- strand): 121986 107922 AGS-1 (110819 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 107922) SCR (e 1.000 d 1.000 a 0.935,e 1.000 d 0.795 a 0.910,e 1.000 d 0.990 a 0.984,e 1.000 d 0.998 a 0.974,e 1.000 d 0.986 a 0.933,e 1.000) Exon 1 110819 110576 ( 244 n); score: 1.000 Intron 1 110575 110463 ( 113 n); Pd: 1.000 Pa: 0.935 Exon 2 110462 110259 ( 204 n); score: 1.000 Intron 2 110258 110101 ( 158 n); Pd: 0.795 Pa: 0.910 Exon 3 110100 110021 ( 80 n); score: 1.000 Intron 3 110020 109387 ( 634 n); Pd: 0.990 Pa: 0.984 Exon 4 109386 109311 ( 76 n); score: 1.000 Intron 4 109310 108691 ( 620 n); Pd: 0.998 Pa: 0.974 Exon 5 108690 108589 ( 102 n); score: 1.000 Intron 5 108588 108503 ( 86 n); Pd: 0.986 Pa: 0.933 Exon 6 108502 107922 ( 581 n); score: 1.000 PGS (110819 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 107922) SGN-U319525+ 3-phase translation of AGS-1 (-strand): . . . . . . 110819 ACAGTATTCACGAATCTTTTTCTAACTAATAGTACTAATTCTATAATCCTAATTCTAACC T V F T N L F L T N S T N S I I L I L T Q Y S R I F F - L I V L I L - S - F - P S I H E S F S N - - Y - F Y N P N S N . . . . . . 110759 TAATCTACTTCGCCGGGCACAGATTAGATGCTGCCGTCGCCGTTCTCTATCTCCGCCAAT - S T S P G T D - M L P S P F S I S A N N L L R R A Q I R C C R R R S L S P P M L I Y F A G H R L D A A V A V L Y L R Q . . . . . . 110699 GAAATCTCTCACTTCCACTGCAGCTCTACTTCTTTCTACTTCTCCGCCGTCTTTACGATC E I S H F H C S S T S F Y F S A V F T I K S L T S T A A L L L S T S P P S L R S - N L S L P L Q L Y F F L L L R R L Y D . . . . . . 110639 TTCTCTCTTACCAAGTCTTCGACCTCTTCTTTATCGAGCTCGCCTCCGCAACAAGCTTAA F S L T K S S T S S L S S S P P Q Q A - S L L P S L R P L L Y R A R L R N K L N L L S Y Q V F D L F F I E L A S A T S L . : . . . . . 110579 TCTG : AGAAGATTGGGAAATGGAACTTGCCGGGCAGAGTTTGCAAACGATGTGCCTTACGC S : E K I G K W N L P G R V C K R C A L R L : R R L G N G T C R A E F A N D V P Y A I - : E D W E M E L A G Q S L Q T M C L T . . . . . . 110406 CGCTGCTATTGGTGCTTGCATTTTGAGCTCGTGGGTTTTCCCGACTACTTACACGGAGGA R C Y W C L H F E L V G F P D Y L H G G A A I G A C I L S S W V F P T T Y T E E P L L L V L A F - A R G F S R L L T R R . . . . . . 110346 GGACGATGGTGAATCCACAATTGATTCTGCTGATGCGAGGTTTGCTGTCATGGCAATTAT G R W - I H N - F C - C E V C C H G N Y D D G E S T I D S A D A R F A V M A I I R T M V N P Q L I L L M R G L L S W Q L . . . : . . . 110286 CAGCTTCATTCCGTATTTTAATTGGATG : AGTTGGGTTTTTGCGTGGTTGGATACTGGGAA Q L H S V F - L D : E L G F C V V G Y W E S F I P Y F N W M : S W V F A W L D T G K S A S F R I L I G - : V G F L R G W I L G . . . . . : . 110068 ACCACGTTATGCAGTTTATGCTCTTGTGTATTTGGCTCCATATTTAAG : CAACAACCTGTC T T L C S L C S C V F G S I F K : Q Q P V P R Y A V Y A L V Y L A P Y L S : N N L S N H V M Q F M L L C I W L H I - : A T T C . . . . . . 109374 TCTATCTCCTGAAGATAGCTTTCTACCCATTGCTAGCATCCTCTTGTGCATCTTCCACAT S I S - R - L S T H C - H P L V H L P H L S P E D S F L P I A S I L L C I F H I L Y L L K I A F Y P L L A S S C A S S T . : . . . . . 109314 TCAG : CTGGAAGCATTCCAAAAAGATGGAAACTTTCAGGTATTAGATAAATTTACGGAGAC S : A G S I P K R W K L S G I R - I Y G D Q : L E A F Q K D G N F Q V L D K F T E T F S : W K H S K K M E T F R Y - I N L R R . . . . . : . 108634 TGGAACTTCAATTGCTGGGAAGAAAGATGTAAGAATGTCAGAAAAG : GAGGAAACATACGA W N F N C W E E R C K N V R K : G G N I R G T S I A G K K D V R M S E K : E E T Y D L E L Q L L G R K M - E C Q K R : R K H T . . . . . . 108488 TCTTAAGAAGTTGTCTTCAGCAGATGAGAAAAGGAGTTGGGAAATTTCTAGAAGACCTGA S - E V V F S R - E K E L G N F - K T - L K K L S S A D E K R S W E I S R R P E I L R S C L Q Q M R K G V G K F L E D L . . . . . . 108428 AAATCGTGAGCACTTGAATGAAGATGGAGAAGATCCTACTTCAAGGAAGCATTAATTTTA K S - A L E - R W R R S Y F K E A L I L N R E H L N E D G E D P T S R K H - F Y K I V S T - M K M E K I L L Q G S I N F . . . . . . 108368 CCTGTTTAAGGCTGAGTTTTGACGGGTCTAATGCCAATCCTTGGAAGGAGCACAATCATA P V - G - V L T G L M P I L G R S T I I L F K A E F - R V - C Q S L E G A Q S Y T C L R L S F D G S N A N P W K E H N H . . . . . . 108308 TGCTGGTGTGTAACTGTGAAAGTAGTTCACTGACCAAACAATAAGCATCTTCTGTACACA C W C V T V K V V H - P N N K H L L Y T A G V - L - K - F T D Q T I S I F C T Q M L V C N C E S S S L T K Q - A S S V H . . . . . . 108248 ACGGATTGATCTTATCGTTCTATGATTCAACTCTACACCAAATATCTGAATTGTCTCTTA T D - S Y R S M I Q L Y T K Y L N C L L R I D L I V L - F N S T P N I - I V S Y N G L I L S F Y D S T L H Q I S E L S L . . . . . . 108188 TCAAAATTTCGACCAGGGCCTACTATGTTTTTGCAGTTGTAGAATAATGACTGCCTTATC S K F R P G P T M F L Q L - N N D C L I Q N F D Q G L L C F C S C R I M T A L S I K I S T R A Y Y V F A V V E - - L P Y . . . . . . 108128 TGTAAGAGTGTACTGTGGGTAACACCCCTCATGCTGTTTCTCTTCCTGAGTTCTATGTAT C K S V L W V T P L M L F L F L S S M Y V R V Y C G - H P S C C F S S - V L C I L - E C T V G N T P H A V S L P E F Y V . . . . . . 108068 CAATTGTAGTTTGTTTTCTCAGAATTTTCACGTTGAGCAGAGGTTCATGCTGTATTGGCA Q L - F V F S E F S R - A E V H A V L A N C S L F S Q N F H V E Q R F M L Y W Q S I V V C F L R I F T L S R G S C C I G . . . . . . 108008 GGTGTGAGCTCATAAATTGTGTACCATCCTGAAGAATTTTCGTCAGTGCAGGCAGAACAT G V S S - I V Y H P E E F S S V Q A E H V - A H K L C T I L K N F R Q C R Q N I R C E L I N C V P S - R I F V S A G R T . . . 107948 TATTTATCACAATTTCATATTCTGAAA Y L S Q F H I L K I Y H N F I F - L F I T I S Y S E Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-15_AGS-1_PPS_1 (110761 110576,110462 110259,110100 110021,109386 109311,108690 108589,108502 108374) (frame '2'; 774 bp, 258 residues) 1 PNLLRRAQIR CCRRRSLSPP MKSLTSTAAL LLSTSPPSLR SSLLPSLRPL LYRARLRNKL 61 NLRRLGNGTC RAEFANDVPY AAAIGACILS SWVFPTTYTE EDDGESTIDS ADARFAVMAI 121 ISFIPYFNWM SWVFAWLDTG KPRYAVYALV YLAPYLSNNL SLSPEDSFLP IASILLCIFH 181 IQLEAFQKDG NFQVLDKFTE TGTSIAGKKD VRMSEKEETY DLKKLSSADE KRSWEISRRP 241 ENREHLNEDG EDPTSRKH- AGS-2 (121986 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111089) SCR (e 0.999 d 0.994 a 0.997,e 1.000 d 0.998 a 0.966,e 1.000 d 0.976 a 0.998,e 1.000 d 0.960 a 0.998,e 1.000 d 0.981 a 0.890,e 1.000 d 0.998 a 0.974,e 1.000 d 0.984 a 0.999,e 1.000 d 0.995 a 0.995,e 1.000 d 0.620 a 0.975,e 1.000 d 0.788 a 0.968,e 1.000 d 0.989 a 0.584,e 1.000 d 0.932 a 0.837,e 1.000 d 0.000 a 0.992,e 1.000 d 0.994 a 0.419,e 1.000 d 0.878 a 0.990,e 1.000 d 0.943 a 0.783,e 1.000 d 0.000 a 0.985,e 1.000 d 0.417 a 0.989,e 1.000 d 0.992 a 0.861,e 1.000 d 0.000 a 0.993,e 1.000 d 0.980 a 0.993,e 1.000 d 0.000 a 0.995,e 1.000) Exon 1 121986 121317 ( 670 n); score: 0.999 Intron 1 121316 118490 (2827 n); Pd: 0.994 Pa: 0.997 Exon 2 118489 118235 ( 255 n); score: 1.000 Intron 2 118234 118154 ( 81 n); Pd: 0.998 Pa: 0.966 Exon 3 118153 118029 ( 125 n); score: 1.000 Intron 3 118028 117921 ( 108 n); Pd: 0.976 Pa: 0.998 Exon 4 117920 117876 ( 45 n); score: 1.000 Intron 4 117875 117171 ( 705 n); Pd: 0.960 Pa: 0.998 Exon 5 117170 117089 ( 82 n); score: 1.000 Intron 5 117088 116995 ( 94 n); Pd: 0.981 Pa: 0.890 Exon 6 116994 116926 ( 69 n); score: 1.000 Intron 6 116925 116693 ( 233 n); Pd: 0.998 Pa: 0.974 Exon 7 116692 116522 ( 171 n); score: 1.000 Intron 7 116521 116440 ( 82 n); Pd: 0.984 Pa: 0.999 Exon 8 116439 116374 ( 66 n); score: 1.000 Intron 8 116373 115697 ( 677 n); Pd: 0.995 Pa: 0.995 Exon 9 115696 115628 ( 69 n); score: 1.000 Intron 9 115627 115521 ( 107 n); Pd: 0.620 Pa: 0.975 Exon 10 115520 115449 ( 72 n); score: 1.000 Intron 10 115448 115368 ( 81 n); Pd: 0.788 Pa: 0.968 Exon 11 115367 115306 ( 62 n); score: 1.000 Intron 11 115305 114374 ( 932 n); Pd: 0.989 Pa: 0.584 Exon 12 114373 114095 ( 279 n); score: 1.000 Intron 12 114094 113632 ( 463 n); Pd: 0.932 Pa: 0.837 Exon 13 113631 113498 ( 134 n); score: 1.000 Intron 13 113497 113363 ( 135 n); Pd: 0.000 Pa: 0.992 Exon 14 113362 113268 ( 95 n); score: 1.000 Intron 14 113267 113202 ( 66 n); Pd: 0.994 Pa: 0.419 Exon 15 113201 113163 ( 39 n); score: 1.000 Intron 15 113162 113077 ( 86 n); Pd: 0.878 Pa: 0.990 Exon 16 113076 113017 ( 60 n); score: 1.000 Intron 16 113016 112869 ( 148 n); Pd: 0.943 Pa: 0.783 Exon 17 112868 112767 ( 102 n); score: 1.000 Intron 17 112766 112581 ( 186 n); Pd: 0.000 Pa: 0.985 Exon 18 112580 112529 ( 52 n); score: 1.000 Intron 18 112528 112423 ( 106 n); Pd: 0.417 Pa: 0.989 Exon 19 112422 112370 ( 53 n); score: 1.000 Intron 19 112369 112213 ( 157 n); Pd: 0.992 Pa: 0.861 Exon 20 112212 112148 ( 65 n); score: 1.000 Intron 20 112147 112050 ( 98 n); Pd: 0.000 Pa: 0.993 Exon 21 112049 111998 ( 52 n); score: 1.000 Intron 21 111997 111783 ( 215 n); Pd: 0.980 Pa: 0.993 Exon 22 111782 111672 ( 111 n); score: 1.000 Intron 22 111671 111578 ( 94 n); Pd: 0.000 Pa: 0.995 Exon 23 111577 111089 ( 489 n); score: 1.000 PGS (121986 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111672,111577 111089) SGN-U317107+ PGS (121486 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115499) SGN-U317106+ 3-phase translation of AGS-2 (-strand): . . . . . . 121986 TCACAATTGCACAAGTAATTTGAATTCTCATTATTTTTTTTCTATTTGTTTGCTAGAAAT S Q L H K - F E F S L F F F Y L F A R N H N C T S N L N S H Y F F S I C L L E I T I A Q V I - I L I I F F L F V C - K . . . . . . 121926 AAATAAATAAATAAATTGACACGTGGCAAGGGCTACGTGTCATCACAGAGATACATGTAT K - I N K L T R G K G Y V S S Q R Y M Y N K - I N - H V A R A T C H H R D T C I - I N K - I D T W Q G L R V I T E I H V . . . . . . 121866 CCACGTCAGCGTCTCTACACCACCCAAGTTACGATCCGGAACCCAGACCCGAATTACACG P R Q R L Y T T Q V T I R N P D P N Y T H V S V S T P P K L R S G T Q T R I T R S T S A S L H H P S Y D P E P R P E L H . . . . . . 121806 TATCCATATGCTGGCTGGCACGAGGCATCTCCTTCGATATGGTAGTCAACAGATCCCCTA Y P Y A G W H E A S P S I W - S T D P L I H M L A G T R H L L R Y G S Q Q I P - V S I C W L A R G I S F D M V V N R S P . . . . . . 121746 ATGATAAAATAAAAGTAAAATCACTTTCAGTAAATTAAATTATTTATCGCCTAGAATTTA M I K - K - N H F Q - I K L F I A - N L - - N K S K I T F S K L N Y L S P R I - N D K I K V K S L S V N - I I Y R L E F . . . . . . 121686 GAGAAAAATAGAAAAACAAAATAGGTAGTAGTAATAAAATATTATCGATAATTTGTCATA E K N R K T K - V V V I K Y Y R - F V I R K I E K Q N R - - - - N I I D N L S - R E K - K N K I G S S N K I L S I I C H . . . . . . 121626 GAATAGTTCATTTGTGAGCTACATTCAACTGCCAATACTTTCTCCGATGCTCTTCCGTCA E - F I C E L H S T A N T F S D A L P S N S S F V S Y I Q L P I L S P M L F R Q R I V H L - A T F N C Q Y F L R C S S V . . . . . . 121566 ACTTCAACGGCCATTTCCACAATCGGCAACTTATACTTCACTTTTATAACAAAGCGATTT T S T A I S T I G N L Y F T F I T K R F L Q R P F P Q S A T Y T S L L - Q S D F N F N G H F H N R Q L I L H F Y N K A I . . . . . . 121506 TGCTTATTCGGTCCCAGCGGCGATGGGCGGCGGCGGTCCCAGAAATTATTCGGCGAATCC C L F G P S G D G R R R S Q K L F G E S A Y S V P A A M G G G G P R N Y S A N P L L I R S Q R R W A A A V P E I I R R I . . . . . . 121446 AAATGATTACAAGCTTCTCGAAGAAGTCGGTTATGGAGCGAGTGCAACAGTTTATAGAGC K - L Q A S R R S R L W S E C N S L - S N D Y K L L E E V G Y G A S A T V Y R A Q M I T S F S K K S V M E R V Q Q F I E . . . . . . 121386 GATCTATCTTCCTTACAATGAAGTTATCGCAGTCAAGTGCTTGGATCTCGATCGCTGTAA D L S S L Q - S Y R S Q V L G S R S L - I Y L P Y N E V I A V K C L D L D R C N R S I F L T M K L S Q S S A W I S I A V . : . . . . . 121326 CAGCAATCTG : GATGACATACGCAGGGAAGCTCAAACTATGAGTTTGATAGACCATCCTAA Q Q S : G - H T Q G S S N Y E F D R P S - S N L : D D I R R E A Q T M S L I D H P N T A I W : M T Y A G K L K L - V - - T I L . . . . . . 118439 TGTAATAAAGTCATTCTGTTCATTTGTTGTTGAGAACTACCTATGGGTGGTAATGCCCTT C N K V I L F I C C - E L P M G G N A L V I K S F C S F V V E N Y L W V V M P F M - - S H S V H L L L R T T Y G W - C P . . . . . . 118379 CATGGCTGAGGGCTCTTGTCTACATCTCATGAAAATAGCATATCCAGATGGATTCGAAGA H G - G L L S T S H E N S I S R W I R R M A E G S C L H L M K I A Y P D G F E E S W L R A L V Y I S - K - H I Q M D S K . . . . . . 118319 ATCTGCTATTTGTTCTATGTTGAAGGAAACTCTCAAGGCGTTGGAATATCTCCATCGACA I C Y L F Y V E G N S Q G V G I S P S T S A I C S M L K E T L K A L E Y L H R H N L L F V L C - R K L S R R W N I S I D . . . : . . . 118259 TGGGCACATACATCGAGATGTGAAG : GCTGGGAATATATTACTGGACACTAATGGGGCAGT W A H T S R C E : G W E Y I T G H - W G S G H I H R D V K : A G N I L L D T N G A V M G T Y I E M - R : L G I Y Y W T L M G Q . . . . . . 118118 AAAGCTGGGCGATTTTGGTGTTTCCGCATGCATGTTTGACAGTGGTGATAGACAGCGGTC K A G R F W C F R M H V - Q W - - T A V K L G D F G V S A C M F D S G D R Q R S - S W A I L V F P H A C L T V V I D S G . . . : . . . 118058 TAGGAATACCTTTGTAGGAACTCCGTGCTG : GATGGCACCAGAAGTTCTGCAGCCTGGAAC - E Y L C R N S V L : D G T R S S A A W N R N T F V G T P C W : M A P E V L Q P G T L G I P L - E L R A : G W H Q K F C S L E . . : . . . . 117890 TGGATATGATTTTAA : GGCTGACATTTGGTCATTTGGAATAACTGCCCTGGAATTGGCTCA W I - F - : G - H L V I W N N C P G I G S G Y D F K : A D I W S F G I T A L E L A H L D M I L : R L T F G H L E - L P W N W L . . . . : . . 117125 TGGTCATGCACCATTTTCAAAGTACCCTCCAATGAAG : GTACTTCTGATGACAATACAGAA W S C T I F K V P S N E : G T S D D N T E G H A P F S K Y P P M K : V L L M T I Q N M V M H H F Q S T L Q - R : Y F - - Q Y R . . . . . : . 116971 TGCCCCTCCTGGACTTGATTATGACAGAGACAAAAAATTCTCTAAG : TCATTCAAGGAAAT C P S W T - L - Q R Q K I L - : V I Q G N A P P G L D Y D R D K K F S K : S F K E M M P L L D L I M T E T K N S L S : H S R K . . . . . . 116678 GGTTGCGATGTGTTTGGTGAAAGATCAAACTAAAAGGCCAACTGCTGAGAAGTTGTTGAA G C D V F G E R S N - K A N C - E V V E V A M C L V K D Q T K R P T A E K L L K W L R C V W - K I K L K G Q L L R S C - . . . . . . 116618 GCATTCATTTTTCAAATATGCTAAGCCCCCAGAGCTTTCTGTAAAAAAACTCTTTGCTGA A F I F Q I C - A P R A F C K K T L C - H S F F K Y A K P P E L S V K K L F A D S I H F S N M L S P Q S F L - K N S L L . . . . : . . 116558 CCTGCCACCACTTTGGAATCGAGTTAAAGCTCTACAG : CTTAAAGATGCTGCCCAACTAGC P A T T L E S S - S S T : A - R C C P T S L P P L W N R V K A L Q : L K D A A Q L A T C H H F G I E L K L Y S : L K M L P N - . . . . . : . 116416 TTTGAAGAGAATGCCTTCTTCCGAGCAGGAAGCATTATCACAG : AGTGAGTACCAACGGGG F E E N A F F R A G S I I T : E - V P T G L K R M P S S E Q E A L S Q : S E Y Q R G L - R E C L L P S R K H Y H R : V S T N G . . . . . . : 115679 AGTTAGCGCCTGGAACTTTGATTTGGAGGATTTAAAGCTTCAGGCTTCACTG : GTACAGGA S - R L E L - F G G F K A S G F T : G T G V S A W N F D L E D L K L Q A S L : V Q D E L A P G T L I W R I - S F R L H W : Y R . . . . . . 115512 CGATGATGAAATACAAGAAATTAAGGAAGAAGATGATACCATCAAAGCTTATATGAACTA R - - N T R N - G R R - Y H Q S L Y E L D D E I Q E I K E E D D T I K A Y M N Y T M M K Y K K L R K K M I P S K L I - T . : . . . . . 115452 CAAG : GAGAAATCTGTTGCCCTACAATATGCTGGAAAATCAACCCCTAGAAAAGATTCTAT Q : G E I C C P T I C W K I N P - K R F Y K : E K S V A L Q Y A G K S T P R K D S I T R : R N L L P Y N M L E N Q P L E K I L . : . . . . . 115311 TGCCAG : TGAGCAAGAAAGTATTGGTGAAGTGCCAGTAGCTGAATACGAGATCAAGAAGGG C Q : - A R K Y W - S A S S - I R D Q E G A S : E Q E S I G E V P V A E Y E I K K G L P : V S K K V L V K C Q - L N T R S R R . . . . . . 114319 AAAAGATTTGGAGAGCAGTACACCAGATTCTGATCATTGGGAGAAAAATGGACTGAAGAA K R F G E Q Y T R F - S L G E K W T E E K D L E S S T P D S D H W E K N G L K K E K I W R A V H Q I L I I G R K M D - R . . . . . . 114259 GAATGCATCAAAAACAGAGTTGCCACCCCTAACCTCAGACAGGGATGTCTTACCAGCCAA E C I K N R V A T P N L R Q G C L T S Q N A S K T E L P P L T S D R D V L P A K R M H Q K Q S C H P - P Q T G M S Y Q P . . . . . . 114199 GAGTAGAACTCAAACACCAAAAGCTCGTCAAAGTCAGAGTGGACCACTTATGGCTGGCGC E - N S N T K S S S K S E W T T Y G W R S R T Q T P K A R Q S Q S G P L M A G A R V E L K H Q K L V K V R V D H L W L A . . . . . : . 114139 TGTACTTAGTCACTCGGCATCAGAAAGAGTTCGAAGCTCCGAAAG : AAGTGAGATTGAAAA C T - S L G I R K S S K L R K : K - D - K V L S H S A S E R V R S S E R : S E I E N L Y L V T R H Q K E F E A P K : E V R L K . . . . . . 113616 CCAACAACCAGGAGATAAAGCTCATCCAGTGCGAAGAGCACCCAGCTTTAGTGGGCCTTT P T T R R - S S S S A K S T Q L - W A F Q Q P G D K A H P V R R A P S F S G P L T N N Q E I K L I Q C E E H P A L V G L . . . . . . : 113556 AATGCTTCCAAATCGAGCTTCAGGAAATAGTTTATCAGCTCCGATTAAATCATCTGGGG : G N A S K S S F R K - F I S S D - I I W G : M L P N R A S G N S L S A P I K S S G : G - C F Q I E L Q E I V Y Q L R L N H L G : . . . . . . 113361 ATTCAAAGATTCCTTGGATGACAAGTCGAAGCCGAACTTGGTCCAAATAAAAGGCCGTTT I Q R F L G - Q V E A E L G P N K R P F F K D S L D D K S K P N L V Q I K G R F D S K I P W M T S R S R T W S K - K A V . . . . : . . 113301 CTCTGTAACATCAGAAAATGTAGATCTTGTAAAG : GATATTCCATTATGTACAGTTCCTCG L C N I R K C R S C K : G Y S I M Y S S S S V T S E N V D L V K : D I P L C T V P R S L - H Q K M - I L - R : I F H Y V Q F L . . : . . . . 113175 ACGATCTTCTCAA : GGATCACCACTTAGGAAGTCTGCTAGTGTTGGAGAATGGCTGGTCGA T I F S : R I T T - E V C - C W R M A G R R S S Q : G S P L R K S A S V G E W L V E D D L L K : D H H L G S L L V L E N G W S . . : . . . . 113029 ATCTAAACAAATG : CCACCCAGTCAACCGCCCAAGGAACTTGGCGTTAATAATGTTCCTGC I - T N : A T Q S T A Q G T W R - - C S C S K Q M : P P S Q P P K E L G V N N V P A N L N K C : H P V N R P R N L A L I M F L . . . . . . : 112821 TTCAGTTCTCATGCCTCACTTACAAAATCTCTTTCAACAGACGTCAATTCAACAG : GATCT F S S H A S L T K S L S T D V N S T : G S S V L M P H L Q N L F Q Q T S I Q Q : D L L Q F S C L T Y K I S F N R R Q F N R : I . . . . . : . 112575 CATTGTAAATCTATTGAGTAGCTTGCAACTATCTGAGGCAGGAGATT : CTTCTCAAAATGG H C K S I E - L A T I - G R R F : F S K W I V N L L S S L Q L S E A G D : S S Q N G S L - I Y - V A C N Y L R Q E I : L L K M . . . . : . . 112409 GAAGTTATCTCCCTTACAGCGCCCAGAGAGCAATGGAATT : GTTGAAGCAGCTGTTTCTGA E V I S L T A P R E Q W N : C - S S C F - K L S P L Q R P E S N G I : V E A A V S E G S Y L P Y S A Q R A M E L : L K Q L F L . . . . . : . 112192 GAGGGAGAAGCTATTATTAGTCAAAATATCTGAGCTTCAGGCTAG : GATGATTAATTTGAC E G E A I I S Q N I - A S G - : D D - F D R E K L L L V K I S E L Q A R : M I N L T R G R S Y Y - S K Y L S F R L : G - L I - . . . . : . . 112034 AGATGAGTTAACTGCAGAAAAATTAAAATACTGGCAG : TTGCAACAGCGGTTAAATGCCAT R - V N C R K I K I L A : V A T A V K C H D E L T A E K L K Y W Q : L Q Q R L N A M Q M S - L Q K N - N T G S : C N S G - M P . . . . . . 111759 GTCAAGTTGCGGAGAGGATGGGGACAGAAGAGAGTTGGAATCCTGATGACAATGATACGT V K L R R G W G Q K R V G I L M T M I R S S C G E D G D R R E L E S - - Q - Y V C Q V A E R M G T E E S W N P D D N D T . . . : . . . 111699 TTCATATATAAACACCGTGTATATTCAG : GTTTAAGTATAGGAAGAGGCAGAGTGTAATTA F I Y K H R V Y S : G L S I G R G R V - L S Y I N T V Y I Q : V - V - E E A E C N Y F H I - T P C I F R : F K Y R K R Q S V I . . . . . . 111545 TTCTTATGTCACTGAATCATGCACTTGTCCTTGTTGAATAGCTCGTGTGGGAAGAATCCA F L C H - I M H L S L L N S S C G K N P S Y V T E S C T C P C - I A R V G R I H I L M S L N H A L V L V E - L V W E E S . . . . . . 111485 TCTCCAAGAATCAATAAACAAAATAATGAGCGCATAGATAATTTCTTCATTTGTTTGACA S P R I N K Q N N E R I D N F F I C L T L Q E S I N K I M S A - I I S S F V - Q I S K N Q - T K - - A H R - F L H L F D . . . . . . 111425 AGTAGGTGCTGAAAACAAGCTTCTTGTGCAGATTCACGTCAAGGGATTATTATTTTTATT S R C - K Q A S C A D S R Q G I I I F I V G A E N K L L V Q I H V K G L L F L F K - V L K T S F L C R F T S R D Y Y F Y . . . . . . 111365 TAGATATAGAAGATTGTGGAGGGAGGAAGGGCGGGCTCAGCGGGCAGAGACTAGAGAGTG - I - K I V E G G R A G S A G R D - R V R Y R R L W R E E G R A Q R A E T R E W L D I E D C G G R K G G L S G Q R L E S . . . . . . 111305 GGAGTGGTGGGTTCAATTTCGAATTTCATTTGTAGATCCTTAGTTTATGATGTAGTCAAT G V V G S I S N F I C R S L V Y D V V N E W W V Q F R I S F V D P - F M M - S I G S G G F N F E F H L - I L S L - C S Q . . . . . . 111245 ATTAAGGTGTAATTTTGTATCATATATGATGATCATGAGATGTGTGTTCAATAAAGCTTT I K V - F C I I Y D D H E M C V Q - S F L R C N F V S Y M M I M R C V F N K A F Y - G V I L Y H I - - S - D V C S I K L . . . . . . 111185 TAGCTTCACAAGCATCCCTCAAGCCTAACATATTTGTGGCCGTTGCCAAATTGCCATTGC - L H K H P S S L T Y L W P L P N C H C S F T S I P Q A - H I C G R C Q I A I A L A S Q A S L K P N I F V A V A K L P L . . . . 111125 ATAAATGGAGAGATGGATCTGGTACTGTTGGACCCAA I N G E M D L V L L D P - M E R W I W Y C W T Q H K W R D G S G T V G P Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-15_AGS-2_PPS_1 (121517 121317,118489 118235,118153 118029,117920 117876,117170 117089,116994 116926,116692 116522,116439 116374,115696 115628,115520 115449,115367 115306,114373 114095,113631 113498,113362 113268,113201 113163,113076 113017,112868 112767,112580 112529,112422 112370,112212 112148,112049 111998,111782 111714) (frame '2'; 2214 bp, 738 residues) 1 QSDFAYSVPA AMGGGGPRNY SANPNDYKLL EEVGYGASAT VYRAIYLPYN EVIAVKCLDL 61 DRCNSNLDDI RREAQTMSLI DHPNVIKSFC SFVVENYLWV VMPFMAEGSC LHLMKIAYPD 121 GFEESAICSM LKETLKALEY LHRHGHIHRD VKAGNILLDT NGAVKLGDFG VSACMFDSGD 181 RQRSRNTFVG TPCWMAPEVL QPGTGYDFKA DIWSFGITAL ELAHGHAPFS KYPPMKVLLM 241 TIQNAPPGLD YDRDKKFSKS FKEMVAMCLV KDQTKRPTAE KLLKHSFFKY AKPPELSVKK 301 LFADLPPLWN RVKALQLKDA AQLALKRMPS SEQEALSQSE YQRGVSAWNF DLEDLKLQAS 361 LVQDDDEIQE IKEEDDTIKA YMNYKEKSVA LQYAGKSTPR KDSIASEQES IGEVPVAEYE 421 IKKGKDLESS TPDSDHWEKN GLKKNASKTE LPPLTSDRDV LPAKSRTQTP KARQSQSGPL 481 MAGAVLSHSA SERVRSSERS EIENQQPGDK AHPVRRAPSF SGPLMLPNRA SGNSLSAPIK 541 SSGGFKDSLD DKSKPNLVQI KGRFSVTSEN VDLVKDIPLC TVPRRSSQGS PLRKSASVGE 601 WLVESKQMPP SQPPKELGVN NVPASVLMPH LQNLFQQTSI QQDLIVNLLS SLQLSEAGDS 661 SQNGKLSPLQ RPESNGIVEA AVSEREKLLL VKISELQARM INLTDELTAE KLKYWQLQQR 721 LNAMSSCGED GDRRELES- >C08SLm0006K11.1-_PGL-15_AGS-2_PPS_2 (121912 121709) (frame '0'; 201 bp, 67 residues) 1 IDTWQGLRVI TEIHVSTSAS LHHPSYDPEP RPELHVSICW LARGISFDMV VNRSPNDKIK 61 VKSLSVN- AGS-3 (112199 111310) SCR (e 0.908) Exon 1 112199 111310 ( 890 n); score: 0.908 PGS (112199 111310) SGN-U335955- 3-phase translation of AGS-3 (-strand): . . . . . . 112199 TTTCTGAGAGGGAGAAGCTATTATTAGTCAAAATATCTGAGCTTCAGGCTAGGTCAGTCC F L R G R S Y Y - S K Y L S F R L G Q S F - E G E A I I S Q N I - A S G - V S P S E R E K L L L V K I S E L Q A R S V . . . . . . 112139 ACTGTGGACGCAAATCAACTGTGGTGCATTTTTCTCACAGTTCTATGTGGGACTTCTAAT T V D A N Q L W C I F L T V L C G T S N L W T Q I N C G A F F S Q F Y V G L L I H C G R K S T V V H F S H S S M W D F - . . . . . . 112079 TGAAGAACTGATCTTCTCTCTACTTTGCAGGATGATTAATTTGACAGATGAGTTAACTGC - R T D L L S T L Q D D - F D R - V N C E E L I F S L L C R M I N L T D E L T A L K N - S S L Y F A G - L I - Q M S - L . . . . . . 112019 AGAAAAATTAAAATACTGGCAGGTGAGTGCACAGTGGTTTCTTTGATGCAAAGGTCTATG R K I K I L A G E C T V V S L M Q R S M E K L K Y W Q V S A Q W F L - C K G L C Q K N - N T G R - V H S G F F D A K V Y . . . . . . 111959 TAATATTAATTGAATTGAAGTAAATGAAAAGATAGTAATAGAAGACCAACTGTGTGGAAC - Y - L N - S K - K D S N R R P T V W N N I N - I E V N E K I V I E D Q L C G T V I L I E L K - M K R - - - K T N C V E . . . . . . 111899 TACTTTGATGAGGTTTAAAAAACTAGGTCCAAAGTTAAAACAATTGAGGGGATGAACTGG Y F D E V - K T R S K V K T I E G M N W T L M R F K K L G P K L K Q L R G - T G L L - - G L K N - V Q S - N N - G D E L . . . . . . 111839 AAAGGTTTATTTATAGCATCCAAGTGTGTTGCTAACAATGGTTTTTCACTGCTACAGTTG K G L F I A S K C V A N N G F S L L Q L K V Y L - H P S V L L T M V F H C Y S C E R F I Y S I Q V C C - Q W F F T A T V . . . . . . 111779 CAACAGCGGTTAAATGCCATGTCAAGTTGCGGAGAGGATGGGGACAGAAGAGAGTTGGAA Q Q R L N A M S S C G E D G D R R E L E N S G - M P C Q V A E R M G T E E S W N A T A V K C H V K L R R G W G Q K R V G . . . . . . 111719 TCCTGATGACAATGATACGTTTCATATATAAACACCGTGTATATTCAGGTGTCTATTTGA S - - Q - Y V S Y I N T V Y I Q V S I - P D D N D T F H I - T P C I F R C L F D I L M T M I R F I Y K H R V Y S G V Y L . . . . . . 111659 TGTTGCTAGAGCAGATAATTATGATTTTTTTCACACACATATAAATGCCTTGAACAGACG C C - S R - L - F F S H T Y K C L E Q T V A R A D N Y D F F H T H I N A L N R R M L L E Q I I M I F F T H I - M P - T D . . . . . . 111599 TAATTGTCGTTTGCTTTTGCAGGTTTAAGTATAGGAAGAGGCAGAGTGTAATTATTCTTA - L S F A F A G L S I G R G R V - L F L N C R L L L Q V - V - E E A E C N Y S Y V I V V C F C R F K Y R K R Q S V I I L . . . . . . 111539 TGTCACTGAATCATGCACTTGTCCTTGTTGAATAGCTCGTGTGGGAAGAATCCATCTCCA C H - I M H L S L L N S S C G K N P S P V T E S C T C P C - I A R V G R I H L Q M S L N H A L V L V E - L V W E E S I S . . . . . . 111479 AGAATCAATAAACAAAATAATGAGCGCATAGATAATTTCTTCATTTGTTTGACAAGTAGG R I N K Q N N E R I D N F F I C L T S R E S I N K I M S A - I I S S F V - Q V G K N Q - T K - - A H R - F L H L F D K - . . . . . . 111419 TGCTGAAAACAAGCTTCTTGTGCAGATTCACGTCAAGGGATTATTATTTTTATTTAGATA C - K Q A S C A D S R Q G I I I F I - I A E N K L L V Q I H V K G L L F L F R Y V L K T S F L C R F T S R D Y Y F Y L D . . . . . 111359 TAGAAGATTGTGGAGGGAGGAAGGGCGGGCTCAGCGGGCAGAGACTAGAG - K I V E G G R A G S A G R D - R R L W R E E G R A Q R A E T R I E D C G G R K G G L S G Q R L E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 111310 CTCTAGTCTCTGCCCGCTGAGCCCGCCCTTCCTCCCTCCACAATCTTCTATATCTAAATA L - S L P A E P A L P P S T I F Y I - I S S L C P L S P P F L P P Q S S I S K - L V S A R - A R P S S L H N L L Y L N . . . . . . 111370 AAAATAATAATCCCTTGACGTGAATCTGCACAAGAAGCTTGTTTTCAGCACCTACTTGTC K I I I P - R E S A Q E A C F Q H L L V K - - S L D V N L H K K L V F S T Y L S K N N N P L T - I C T R S L F S A P T C . . . . . . 111430 AAACAAATGAAGAAATTATCTATGCGCTCATTATTTTGTTTATTGATTCTTGGAGATGGA K Q M K K L S M R S L F C L L I L G D G N K - R N Y L C A H Y F V Y - F L E M D Q T N E E I I Y A L I I L F I D S W R W . . . . . . 111490 TTCTTCCCACACGAGCTATTCAACAAGGACAAGTGCATGATTCAGTGACATAAGAATAAT F F P H E L F N K D K C M I Q - H K N N S S H T S Y S T R T S A - F S D I R I I I L P T R A I Q Q G Q V H D S V T - E - . . . . . . 111550 TACACTCTGCCTCTTCCTATACTTAAACCTGCAAAAGCAAACGACAATTACGTCTGTTCA Y T L P L P I L K P A K A N D N Y V C S T L C L F L Y L N L Q K Q T T I T S V Q L H S A S S Y T - T C K S K R Q L R L F . . . . . . 111610 AGGCATTTATATGTGTGTGAAAAAAATCATAATTATCTGCTCTAGCAACATCAAATAGAC R H L Y V C E K N H N Y L L - Q H Q I D G I Y M C V K K I I I I C S S N I K - T K A F I C V - K K S - L S A L A T S N R . . . . . . 111670 ACCTGAATATACACGGTGTTTATATATGAAACGTATCATTGTCATCAGGATTCCAACTCT T - I Y T V F I Y E T Y H C H Q D S N S P E Y T R C L Y M K R I I V I R I P T L H L N I H G V Y I - N V S L S S G F Q L . . . . . . 111730 CTTCTGTCCCCATCCTCTCCGCAACTTGACATGGCATTTAACCGCTGTTGCAACTGTAGC L L S P S S P Q L D M A F N R C C N C S F C P H P L R N L T W H L T A V A T V A S S V P I L S A T - H G I - P L L Q L - . . . . . . 111790 AGTGAAAAACCATTGTTAGCAACACACTTGGATGCTATAAATAAACCTTTCCAGTTCATC S E K P L L A T H L D A I N K P F Q F I V K N H C - Q H T W M L - I N L S S S S Q - K T I V S N T L G C Y K - T F P V H . . . . . . 111850 CCCTCAATTGTTTTAACTTTGGACCTAGTTTTTTAAACCTCATCAAAGTAGTTCCACACA P S I V L T L D L V F - T S S K - F H T P Q L F - L W T - F F K P H Q S S S T Q P L N C F N F G P S F L N L I K V V P H . . . . . . 111910 GTTGGTCTTCTATTACTATCTTTTCATTTACTTCAATTCAATTAATATTACATAGACCTT V G L L L L S F H L L Q F N - Y Y I D L L V F Y Y Y L F I Y F N S I N I T - T F S W S S I T I F S F T S I Q L I L H R P . . . . . . 111970 TGCATCAAAGAAACCACTGTGCACTCACCTGCCAGTATTTTAATTTTTCTGCAGTTAACT C I K E T T V H S P A S I L I F L Q L T A S K K P L C T H L P V F - F F C S - L L H Q R N H C A L T C Q Y F N F S A V N . . . . . . 112030 CATCTGTCAAATTAATCATCCTGCAAAGTAGAGAGAAGATCAGTTCTTCAATTAGAAGTC H L S N - S S C K V E R R S V L Q L E V I C Q I N H P A K - R E D Q F F N - K S S S V K L I I L Q S R E K I S S S I R S . . . . . . 112090 CCACATAGAACTGTGAGAAAAATGCACCACAGTTGATTTGCGTCCACAGTGGACTGACCT P H R T V R K M H H S - F A S T V D - P H I E L - E K C T T V D L R P Q W T D L P T - N C E K N A P Q L I C V H S G L T . . . . . 112150 AGCCTGAAGCTCAGATATTTTGACTAATAATAGCTTCTCCCTCTCAGAAA S L K L R Y F D - - - L L P L R A - S S D I L T N N S F S L S E - P E A Q I F - L I I A S P S Q K Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-15_AGS-3_PPS_1 (111834 112097) (frame '0'; 261 bp, 87 residues) 1 TFPVHPLNCF NFGPSFLNLI KVVPHSWSSI TIFSFTSIQL ILHRPLHQRN HCALTCQYFN 61 FSAVNSSVKL IILQSREKIS SSIRSPT- PGL 16 (- strand): 123363 122440 AGS-1 (123363 122440) SCR (e 1.000) Exon 1 123363 122440 ( 924 n); score: 1.000 PGS (123363 122440) SGN-U324441+ 3-phase translation of AGS-1 (-strand): . . . . . . 123363 TCCAATCAACTAGCAAAAATGTGTAAAGGATTTCAACCAAACGAGAAAGATCGCCTGAAA S N Q L A K M C K G F Q P N E K D R L K P I N - Q K C V K D F N Q T R K I A - K Q S T S K N V - R I S T K R E R S P E . . . . . . 123303 ATCAAAGGCTTTTATCTCCATTTATCACCGACTGAAACCGTCTCACCGGATTCTCTAACT I K G F Y L H L S P T E T V S P D S L T S K A F I S I Y H R L K P S H R I L - L N Q R L L S P F I T D - N R L T G F S N . . . . . . 123243 CTGCATTATCTCCCTAGAATTAGTGAGAGTCCATTAGAGATTAATGATTCCAAAATCCGA L H Y L P R I S E S P L E I N D S K I R C I I S L E L V R V H - R L M I P K S D S A L S P - N - - E S I R D - - F Q N P . . . . . . 123183 TCCAATTCCCCCGGTTTCGTTACGCTTTACCGGGTAGTATCAGCTGACAATGTAACAACG S N S P G F V T L Y R V V S A D N V T T P I P P V S L R F T G - Y Q L T M - Q R I Q F P R F R Y A L P G S I S - Q C N N . . . . . . 123123 AAAGGTGTTATTTACGGAAGCAGGGACAGAGTTAAAGCCAGTGAAGGAGTAAAATTTGAA K G V I Y G S R D R V K A S E G V K F E K V L F T E A G T E L K P V K E - N L K E R C Y L R K Q G Q S - S Q - R S K I - . . . . . . 123063 ATATTCATGGCTGATGTAAAGCTCATAAAAGGTATTTTCATGAAAGATCTACACAACTGG I F M A D V K L I K G I F M K D L H N W Y S W L M - S S - K V F S - K I Y T T G N I H G - C K A H K R Y F H E R S T Q L . . . . . . 123003 AGAATCGATTGCAAGTGCGCTTTGTTGGAAAACGACGATTTAAAAGTGAAAGGAGCAGAG R I D C K C A L L E N D D L K V K G A E E S I A S A L C W K T T I - K - K E Q R E N R L Q V R F V G K R R F K S E R S R . . . . . . 122943 GTGTGTGTGGCGGTGGAAGGACGCACCGCCGCGCCGCCGGAAGTGATTACTGAGAAGGTG V C V A V E G R T A A P P E V I T E K V C V W R W K D A P P R R R K - L L R R W G V C G G G R T H R R A A G S D Y - E G . . . . . . 122883 GAGATGACGGTGAGATCACGGCGGAGGAGCTGTTTTCAGAAGCTGGAGGAGATTCCTGAA E M T V R S R R R S C F Q K L E E I P E R - R - D H G G G A V F R S W R R F L N G D D G E I T A E E L F S E A G G D S - . . . . . . 122823 CAAAGAGAAGTTGAAAATGACGAGTCTACTTGTTGCTGCTCGGAGTGTGAAGGTGAAGAA Q R E V E N D E S T C C C S E C E G E E K E K L K M T S L L V A A R S V K V K K T K R S - K - R V Y L L L L G V - R - R . . . . . . 122763 GACGATTCGGACGACACCGATACGGCGGAGGGAGTTGGGTGGGCAGTAGATGTAGGGATA D D S D D T D T A E G V G W A V D V G I T I R T T P I R R R E L G G Q - M - G Y R R F G R H R Y G G G S W V G S R C R D . . . . . . 122703 TGGGTGATGTGCCTTGGGGTGGGGGTGGGCTATTTGGTCTCTAGAGCTTCTTCAAAGAGC W V M C L G V G V G Y L V S R A S S K S G - C A L G W G W A I W S L E L L Q R A M G D V P W G G G G L F G L - S F F K E . . . . . . 122643 TTAAGGAGGAGGAGGAGATTCCTATAAAAAAACTCATTGTTTTGGTTAAATAATCCTGCG L R R R R R F L - K N S L F W L N N P A - G G G G D S Y K K T H C F G - I I L R L K E E E E I P I K K L I V L V K - S C . . . . . . 122583 TAGACATTTTTTCCACCACTTATACCTTATAATTTTATTATTCTGCTAGTAATTTCTAAC - T F F P P L I P Y N F I I L L V I S N R H F F H H L Y L I I L L F C - - F L T V D I F S T T Y T L - F Y Y S A S N F - . . . . . . 122523 AAATAGGATATAGAAAGTTTTGTTTTCTGCAAAGTATTACATTTAGGCTCGTTTAATCCA K - D I E S F V F C K V L H L G S F N P N R I - K V L F S A K Y Y I - A R L I Q Q I G Y R K F C F L Q S I T F R L V - S . . . 122463 AAAATAAATTATTCTAGAATTGTT K I N Y S R I V K - I I L E L K N K L F - N C Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1-_PGL-16_AGS-1_PPS_1 (123363 122617) (frame '1'; 744 bp, 248 residues) 1 SNQLAKMCKG FQPNEKDRLK IKGFYLHLSP TETVSPDSLT LHYLPRISES PLEINDSKIR 61 SNSPGFVTLY RVVSADNVTT KGVIYGSRDR VKASEGVKFE IFMADVKLIK GIFMKDLHNW 121 RIDCKCALLE NDDLKVKGAE VCVAVEGRTA APPEVITEKV EMTVRSRRRS CFQKLEEIPE 181 QREVENDEST CCCSECEGEE DDSDDTDTAE GVGWAVDVGI WVMCLGVGVG YLVSRASSKS 241 LRRRRRFL- 3-phase translation of AGS-1 (+strand): . . . . . . 122440 AACAATTCTAGAATAATTTATTTTTGGATTAAACGAGCCTAAATGTAATACTTTGCAGAA N N S R I I Y F W I K R A - M - Y F A E T I L E - F I F G L N E P K C N T L Q K Q F - N N L F L D - T S L N V I L C R . . . . . . 122500 AACAAAACTTTCTATATCCTATTTGTTAGAAATTACTAGCAGAATAATAAAATTATAAGG N K T F Y I L F V R N Y - Q N N K I I R T K L S I S Y L L E I T S R I I K L - G K Q N F L Y P I C - K L L A E - - N Y K . . . . . . 122560 TATAAGTGGTGGAAAAAATGTCTACGCAGGATTATTTAACCAAAACAATGAGTTTTTTTA Y K W W K K C L R R I I - P K Q - V F L I S G G K N V Y A G L F N Q N N E F F Y V - V V E K M S T Q D Y L T K T M S F F . . . . . . 122620 TAGGAATCTCCTCCTCCTCCTTAAGCTCTTTGAAGAAGCTCTAGAGACCAAATAGCCCAC - E S P P P P - A L - R S S R D Q I A H R N L L L L L K L F E E A L E T K - P T I G I S S S S L S S L K K L - R P N S P . . . . . . 122680 CCCCACCCCAAGGCACATCACCCATATCCCTACATCTACTGCCCACCCAACTCCCTCCGC P H P K A H H P Y P Y I Y C P P N S L R P T P R H I T H I P T S T A H P T P S A P P P Q G T S P I S L H L L P T Q L P P . . . . . . 122740 CGTATCGGTGTCGTCCGAATCGTCTTCTTCACCTTCACACTCCGAGCAGCAACAAGTAGA R I G V V R I V F F T F T L R A A T S R V S V S S E S S S S P S H S E Q Q Q V D P Y R C R P N R L L H L H T P S S N K - . . . . . . 122800 CTCGTCATTTTCAACTTCTCTTTGTTCAGGAATCTCCTCCAGCTTCTGAAAACAGCTCCT L V I F N F S L F R N L L Q L L K T A P S S F S T S L C S G I S S S F - K Q L L T R H F Q L L F V Q E S P P A S E N S S . . . . . . 122860 CCGCCGTGATCTCACCGTCATCTCCACCTTCTCAGTAATCACTTCCGGCGGCGCGGCGGT P P - S H R H L H L L S N H F R R R G G R R D L T V I S T F S V I T S G G A A V S A V I S P S S P P S Q - S L P A A R R . . . . . . 122920 GCGTCCTTCCACCGCCACACACACCTCTGCTCCTTTCACTTTTAAATCGTCGTTTTCCAA A S F H R H T H L C S F H F - I V V F Q R P S T A T H T S A P F T F K S S F S N C V L P P P H T P L L L S L L N R R F P . . . . . . 122980 CAAAGCGCACTTGCAATCGATTCTCCAGTTGTGTAGATCTTTCATGAAAATACCTTTTAT Q S A L A I D S P V V - I F H E N T F Y K A H L Q S I L Q L C R S F M K I P F M T K R T C N R F S S C V D L S - K Y L L . . . . . . 123040 GAGCTTTACATCAGCCATGAATATTTCAAATTTTACTCCTTCACTGGCTTTAACTCTGTC E L Y I S H E Y F K F Y S F T G F N S V S F T S A M N I S N F T P S L A L T L S - A L H Q P - I F Q I L L L H W L - L C . . . . . . 123100 CCTGCTTCCGTAAATAACACCTTTCGTTGTTACATTGTCAGCTGATACTACCCGGTAAAG P A S V N N T F R C Y I V S - Y Y P V K L L P - I T P F V V T L S A D T T R - S P C F R K - H L S L L H C Q L I L P G K . . . . . . 123160 CGTAACGAAACCGGGGGAATTGGATCGGATTTTGGAATCATTAATCTCTAATGGACTCTC R N E T G G I G S D F G I I N L - W T L V T K P G E L D R I L E S L I S N G L S A - R N R G N W I G F W N H - S L M D S . . . . . . 123220 ACTAATTCTAGGGAGATAATGCAGAGTTAGAGAATCCGGTGAGACGGTTTCAGTCGGTGA T N S R E I M Q S - R I R - D G F S R - L I L G R - C R V R E S G E T V S V G D H - F - G D N A E L E N P V R R F Q S V . . . . . . 123280 TAAATGGAGATAAAAGCCTTTGATTTTCAGGCGATCTTTCTCGTTTGGTTGAAATCCTTT - M E I K A F D F Q A I F L V W L K S F K W R - K P L I F R R S F S F G - N P L I N G D K S L - F S G D L S R L V E I L . . . 123340 ACACATTTTTGCTAGTTGATTGGA T H F C - L I G H I F A S - L Y T F L L V D W Maximal non-overlapping open reading frames (>= 64 codons): >C08SLm0006K11.1+_PGL-16_AGS-1_PPS_1 (122849 123112) (frame '2'; 261 bp, 87 residues) 1 KQLLRRDLTV ISTFSVITSG GAAVRPSTAT HTSAPFTFKS SFSNKAHLQS ILQLCRSFMK 61 IPFMSFTSAM NISNFTPSLA LTLSLLP- >C08SLm0006K11.1+_PGL-16_AGS-1_PPS_2 (122653 122868) (frame '1'; 213 bp, 71 residues) 1 RSSRDQIAHP HPKAHHPYPY IYCPPNSLRR IGVVRIVFFT FTLRAATSRL VIFNFSLFRN 61 LLQLLKTAPP P- ... finished at: Mon Aug 21 22:17:21 2006