GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 11:15:47 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-83YL3/C08HBa0027D09/C08HBa0027D09.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0027D09.1, from 1 to 116639, both strands analyzed. ... started at: Tue Jul 25 11:39:17 2006 EST library file: /tmp/cxgn-bacpublish-resources-t3KvJk/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 8 ... matches indexed, elapsed seconds = 8 HitsTableSize = 169 EST library file: /tmp/cxgn-bacpublish-resources-t3KvJk/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 181 ******************************************************************************** EST sequence 318 +strand 664 n (File: SGN-E346307+) 1 TTTTCCCTTA ATTTAGTGTT TTTTTCAAGT GTAGAGAAAA ATGCAAGAGC AAGCGACGAG 61 TTCTATTGCC GCTAGTTCAC TACCTTCAAG TAGTGAGAGA TCATCTAGTT CAGCTTTACA 121 TCATGAACTC AAAGAAGGTA TGGAGAGTGA TGATGAGATC AGAAGAGTGC CGGAGATGGG 181 CGGAGAAGCG ACGGGGACAA CGTCAGCTTC TGGAAGAGAT GGAGTATCGG CCGCCGGTCA 241 AGCTCAACCA TCAGCTGGGA CTCAAAGGAA GAGAGGAAGA AGCCCAGCTG ACAAAGAAAA 301 CAAAAGGTTA AAAAGATTGT TGAGAAATAG AGTATCAGCA CAACAAGCAA GGGAGAGGAA 361 GAAAGCATAT TTGATAGATC TGGAAGCAAG GGTGAAGGAA TTGGAAACAA AGAATGCAGA 421 ACTTGAAGAG AGGTTGTCTA CTTTGCAAAA TGAGAACCAA ATGCTTAGAC ATATACTGAA 481 GAACACAACA GCAGGTGCAC AGGAAGGGAG GAAGTAGACA TATGATCGAT CTTATGTCGA 541 TATGTCAGCA TTCTTGTTTA GATCCTATGT ANGCACTGAA GAGAAATTCT CTTCTGGATT 601 TGAGAATGCA TGCTAGTTTC GGGTGGATTG TTCTGATTTG ATGCATTGCA TACTTGCTAC 661 TCTT Predicted gene structure (within gDNA segment 23220 to 18736): Exon 1 22620 22484 ( 137 n); cDNA 1 137 ( 137 n); score: 1.000 Intron 1 22483 22330 ( 154 n); Pd: 0.997 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 22329 22152 ( 178 n); cDNA 138 315 ( 178 n); score: 1.000 Intron 2 22151 22020 ( 132 n); Pd: 0.996 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 22019 21863 ( 157 n); cDNA 316 472 ( 157 n); score: 1.000 Intron 3 21862 19538 (2325 n); Pd: 0.994 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19537 19346 ( 192 n); cDNA 473 664 ( 192 n); score: 0.995 MATCH C08HBa0027D09.1- SGN-E346307+ 0.998 664 1.000 C PGS_C08HBa0027D09.1-_SGN-E346307+ (22620 22484,22329 22152,22019 21863,19537 19346) Alignment (genomic DNA sequence = upper lines): TTTTCCCTTA ATTTAGTGTT TTTTTCAAGT GTAGAGAAAA ATGCAAGAGC AAGCGACGAG 22561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCCTTA ATTTAGTGTT TTTTTCAAGT GTAGAGAAAA ATGCAAGAGC AAGCGACGAG 60 TTCTATTGCC GCTAGTTCAC TACCTTCAAG TAGTGAGAGA TCATCTAGTT CAGCTTTACA 22501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTATTGCC GCTAGTTCAC TACCTTCAAG TAGTGAGAGA TCATCTAGTT CAGCTTTACA 120 TCATGAACTC AAAGAAGGTA ATCTTTTTTA AAAAAAATTT AAATCCAGCT TTTTAACATT 22441 |||||||||| ||||||| TCATGAACTC AAAGAAG... .......... .......... .......... .......... 137 TAATTTTGAC GAATTTATGG AGTAATTTTT TGAAGAATGT GTTGTTTTGG GTTAGGTATG 22381 .......... .......... .......... .......... .......... .......... 137 GTTGAGATTT TGAAATAGTT TTTAAAAAAC ATTTTGTGTT TTTTTGTGAA GGTATGGAGA 22321 ||||||||| .......... .......... .......... .......... .......... .GTATGGAGA 146 GTGATGATGA GATCAGAAGA GTGCCGGAGA TGGGCGGAGA AGCGACGGGG ACAACGTCAG 22261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATGATGA GATCAGAAGA GTGCCGGAGA TGGGCGGAGA AGCGACGGGG ACAACGTCAG 206 CTTCTGGAAG AGATGGAGTA TCGGCCGCCG GTCAAGCTCA ACCATCAGCT GGGACTCAAA 22201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGGAAG AGATGGAGTA TCGGCCGCCG GTCAAGCTCA ACCATCAGCT GGGACTCAAA 266 GGAAGAGAGG AAGAAGCCCA GCTGACAAAG AAAACAAAAG GTTAAAAAGG TAAAAACCTT 22141 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGAAGAGAGG AAGAAGCCCA GCTGACAAAG AAAACAAAAG GTTAAAAAG. .......... 315 AAACATCATG CCACGTAGGT GTATCTACTT GTCACATGTT ATGGGCTTCC ACACTTTCTT 22081 .......... .......... .......... .......... .......... .......... 315 TTTTTGGATA GCAGTGGCAT TTTAGTTAAT ATTGTATTTT TTTTTGGTGG GGTTGAAAAA 22021 .......... .......... .......... .......... .......... .......... 315 GATTGTTGAG AAATAGAGTA TCAGCACAAC AAGCAAGGGA GAGGAAGAAA GCATATTTGA 21961 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .ATTGTTGAG AAATAGAGTA TCAGCACAAC AAGCAAGGGA GAGGAAGAAA GCATATTTGA 374 TAGATCTGGA AGCAAGGGTG AAGGAATTGG AAACAAAGAA TGCAGAACTT GAAGAGAGGT 21901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATCTGGA AGCAAGGGTG AAGGAATTGG AAACAAAGAA TGCAGAACTT GAAGAGAGGT 434 TGTCTACTTT GCAAAATGAG AACCAAATGC TTAGACATGT AAACATTCTT CTCTCTACTT 21841 |||||||||| |||||||||| |||||||||| |||||||| TGTCTACTTT GCAAAATGAG AACCAAATGC TTAGACAT.. .......... .......... 472 CTATTTTTGC AATAGAATTG TTCATCTATA TATCCTATAT GCTTGAACGT GTGCCATGTC 21781 .......... .......... .......... .......... .......... .......... 472 CGGTCTAATT ACTATTCAGA TACTTCTTCC ACTTACCTCT ATTTCTACTG AATCCATTCA 21721 .......... .......... .......... .......... .......... .......... 472 CAGCCAAACT CTCACCTCCC CCCGCATTTC TACATTCGTG CATCTTTCTC TTCACATATC 21661 .......... .......... .......... .......... .......... .......... 472 TGAATCTCTT CCCGCATCTT ATTCTCTTTC GAAACCACAC TCAGCTTGTT TCAACTGTCC 21601 .......... .......... .......... .......... .......... .......... 472 TGATTTTATT CTATATCTCC TAGTATATGT GTCCACACAT CCATCACAAT ATCTTCATTT 21541 .......... .......... .......... .......... .......... .......... 472 CCACAACTTT CATCTTTTGA ACGTGAGAGT GCTCAACTAC ATGTACTTGC AAAGGCGTAT 21481 .......... .......... .......... .......... .......... .......... 472 TCAGGATTTC GGCAAAATGG ATGCACAATT ACGAATAAAA TGCATCTTAA ATATAAATTT 21421 .......... .......... .......... .......... .......... .......... 472 GATCAATTTG ACTTTAAAGT TTCTAATATA AAACCATTAA ACTTTTAAAA TTGTAGGTGC 21361 .......... .......... .......... .......... .......... .......... 472 AAAATATATA ATACTACTAG TTTAAATTTT AATGCACACA TTTGATTTAA TTATACATAT 21301 .......... .......... .......... .......... .......... .......... 472 AAAATATTTT TTAGGAATTT TTAATGTAAT ACACTTCAAA ATTTTTGAAA AAATTAAGGA 21241 .......... .......... .......... .......... .......... .......... 472 AAAAAAAAGA AGAAAAATTA GTTAAAACGC TAAAAGTATA TAACCAATAA CTACTTGTAG 21181 .......... .......... .......... .......... .......... .......... 472 AGGTGCTACT TAAAAAGACA AGATAGATAT CTAAGATTTT AATTTCTATC CTCACAGAGG 21121 .......... .......... .......... .......... .......... .......... 472 TGCACCCAAT CATCGTCATC ATATTATTAT ACGATACTTT AACTGTGGGT TCACACATCT 21061 .......... .......... .......... .......... .......... .......... 472 ATATTTAAAT ATTTTTCTTA AAATATAACA CTATTATATT TGATCTAGAG ATGGTAGCAT 21001 .......... .......... .......... .......... .......... .......... 472 GGGTTCATGT GAACCCATGA CACCCCCTCT AGATATGCCC CTGTATACTC AACCCCATAC 20941 .......... .......... .......... .......... .......... .......... 472 GACATAGTTG GTCTAACCGT CACTATGTAG AATTTCTCTT TATGTTTTGG TGGAACCTTC 20881 .......... .......... .......... .......... .......... .......... 472 TTATCACTAG CAACTCAGAT GCAAGTCTCT ATGTCATACA CGTTGCACCA ATACAGTGAG 20821 .......... .......... .......... .......... .......... .......... 472 TGACATCCTC GTCAATCACC CCATTTTCTT GGATAACGGA CCAATATACT TGAATAGAGT 20761 .......... .......... .......... .......... .......... .......... 472 ATAGCACCAA AAGTTGTGGT CTATTGTTCA ATGAAGAAGT TGAGAGCCAT GAGATCTCAA 20701 .......... .......... .......... .......... .......... .......... 472 GTTCAAATTC AATAGAGTAA AAGAGCTACT AGGTGATTGT TTCTGTATGT TCTAGCCTTG 20641 .......... .......... .......... .......... .......... .......... 472 GTGAATATAG TTACCTGGTA TTTGATGCTG GTTGGAGGTG ATGATAGGTA TCTCGGGTAA 20581 .......... .......... .......... .......... .......... .......... 472 TTAGTTAAGG TGCGGGAAAG CAGCCTTAAA AATAAATTAG ATGAATGGGG GGATTATCCA 20521 .......... .......... .......... .......... .......... .......... 472 GAAACAATTT ATAAGCTCAG TCATTTCTTT GGTTTAGCTC ACTCTTATAT CGGGCTTTTG 20461 .......... .......... .......... .......... .......... .......... 472 TTATGTCCCA TCAATTATTT ATTAAACATT GAAGACGAGG AGACAAACTA TGAATTATCA 20401 .......... .......... .......... .......... .......... .......... 472 ACAATATGCT GTGACTTCAG CCTCCTGAAG TTACATTAGT ATTATGTAAT TTATGTGCAG 20341 .......... .......... .......... .......... .......... .......... 472 TAGAAATGTA CTAGCGTATG AACATAGATC AAAGCATGGA AGCTTTCTCA CCTTCTATAT 20281 .......... .......... .......... .......... .......... .......... 472 TCCCCAATAT GCATTATACT GCCCATCATA TGTGTACAGA GCATTTAAGC TGAACATATA 20221 .......... .......... .......... .......... .......... .......... 472 ATGTATGAAT GAAGTGTTCT TGTATCTTCC ATAGTATATC TGGTAGCGAG AGATGTAAAG 20161 .......... .......... .......... .......... .......... .......... 472 AATTGCGTAA TCATCCATGA TATATGATGT CAGCTTTCTA CTCTTAGTTA TTACCTTGTA 20101 .......... .......... .......... .......... .......... .......... 472 GTAAATCTAA GAACTACGCT CATGTTAATT GGGAAGTGTA GAGATTACTT GGGTAAAACT 20041 .......... .......... .......... .......... .......... .......... 472 CTCAAGGCTT GTCTGCATGA ACATGTAATA CCAGTAACCG GTTCCTATAA ATTTCGACCT 19981 .......... .......... .......... .......... .......... .......... 472 TGAGCATGTG TTGTATCTAT ACACATCTTT CAGCCTGTAT TTAAGTCACA GGCGTGGCTA 19921 .......... .......... .......... .......... .......... .......... 472 TTTCATATTA ACCCTTTCTT ATACACTTCC CCTCTTGCCG GTTAAGATTG GTACTTATCT 19861 .......... .......... .......... .......... .......... .......... 472 AGTAGAATAA CTATAAGATG AGTCTTGCTG AAAATCAATA AAGACAACTT AGAAATAACA 19801 .......... .......... .......... .......... .......... .......... 472 ACTCTATGTG ACTATCAGTC AAATCTTGGA TTTATCATGA TTAAACATCT AATTGTTGGA 19741 .......... .......... .......... .......... .......... .......... 472 ATGCCATTGA CCTGATTGAC AAAACATCAA CTTTCATGAT TTCATATTGC ATATCCAATC 19681 .......... .......... .......... .......... .......... .......... 472 CGCCTATAAG AATCTCCAAA GACCACACAA AAAGGAATTC AAATGCTTCA ATCTTTCCAT 19621 .......... .......... .......... .......... .......... .......... 472 GCTGTAAATT TGCTTTCTTC AGAGATGGCC AAAAAGAAAA CGGTGTATAT TTGGGGTTTG 19561 .......... .......... .......... .......... .......... .......... 472 ACTTCTTTTG TTATAATCTG CAGATACTGA AGAACACAAC AGCAGGTGCA CAGGAAGGGA 19501 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATACTGA AGAACACAAC AGCAGGTGCA CAGGAAGGGA 509 GGAAGTAGAC ATATGATCGA TCTTATGTCG ATATGTCAGC ATTCTTGTTT AGATCCTATG 19441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGTAGAC ATATGATCGA TCTTATGTCG ATATGTCAGC ATTCTTGTTT AGATCCTATG 569 TAGGCACTGA AGAGAAATTC TCTTCTGGAT TTGAGAATGC ATGCTAGTTT CGGGTGGATT 19381 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TANGCACTGA AGAGAAATTC TCTTCTGGAT TTGAGAATGC ATGCTAGTTT CGGGTGGATT 629 GTTCTGATTT GATGCATTGC ATACTTGCTA CTCTT 19346 |||||||||| |||||||||| |||||||||| ||||| GTTCTGATTT GATGCATTGC ATACTTGCTA CTCTT 664 hqPGS_C08HBa0027D09.1-_SGN-E346307+ (22620 22484,22329 22152,22019 21863,19537 19346) ******************************************************************************** EST sequence 272 +strand 652 n (File: SGN-E377730+) 1 ACTTTTCCCT TAATTTAGTG TTTTTTTCAA GTGTAGAGAA AAATGCAAGA GCAAGCGACG 61 AGTTCTATTG CCGCTAGTTC ACTACCTTCA AGTAGTGAGA GATCATCTAG TTCAGCTTTA 121 CATCATGAAC TCAAAGAAGG TATGGAGAGT GATGATGAGA TCAGAAGAGT GCCGGAGATG 181 GGCGGAGAAG CGACGGGGAC AACGTCAGCT TCTGGAAGAG ATGGAGTATC GGCCGCCGGT 241 CAAGCTCAAC CATCAGCTGG GACTCAAAGG AAGAGAGGAA GAAGCCCAGC TGACAAAGAA 301 AACAAAAGGT TAAAAAGATT GTTGAGAAAT AGAGTATCAG CACAACAAGC AAGGGAGAGG 361 AAGAAAGCAT ATTTGATAGA TCTGGAAGCA AGGGTGAAGG AATTGGAAAC AAAGAATGCA 421 GAACTTGAAG AGAGGTTGTC TACTTTGCAA AATGAGAACC AAATGCTTAG ACATATACTG 481 AAGAACACAA CAGCAGGTGC ACAGGAAGGG AGGAAGTAGA CATATGATCG ATCTTATGTC 541 GATATGTCAG CATTCTTGTT TAGATCCTAT GTAGGCACTG AAGAGAAATT CTCTTCTGGA 601 TTTGAGAATG CATGCTAGTT TCGGGTGGAT TGTTCTGATT TGATGCATTG CA Predicted gene structure (within gDNA segment 23222 to 18750): Exon 1 22622 22484 ( 139 n); cDNA 1 139 ( 139 n); score: 1.000 Intron 1 22483 22330 ( 154 n); Pd: 0.997 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 22329 22152 ( 178 n); cDNA 140 317 ( 178 n); score: 1.000 Intron 2 22151 22020 ( 132 n); Pd: 0.996 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 22019 21863 ( 157 n); cDNA 318 474 ( 157 n); score: 1.000 Intron 3 21862 19538 (2325 n); Pd: 0.994 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 19537 19360 ( 178 n); cDNA 475 652 ( 178 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E377730+ 1.000 652 1.000 C PGS_C08HBa0027D09.1-_SGN-E377730+ (22622 22484,22329 22152,22019 21863,19537 19360) Alignment (genomic DNA sequence = upper lines): ACTTTTCCCT TAATTTAGTG TTTTTTTCAA GTGTAGAGAA AAATGCAAGA GCAAGCGACG 22563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTCCCT TAATTTAGTG TTTTTTTCAA GTGTAGAGAA AAATGCAAGA GCAAGCGACG 60 AGTTCTATTG CCGCTAGTTC ACTACCTTCA AGTAGTGAGA GATCATCTAG TTCAGCTTTA 22503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTATTG CCGCTAGTTC ACTACCTTCA AGTAGTGAGA GATCATCTAG TTCAGCTTTA 120 CATCATGAAC TCAAAGAAGG TAATCTTTTT TAAAAAAAAT TTAAATCCAG CTTTTTAACA 22443 |||||||||| ||||||||| CATCATGAAC TCAAAGAAG. .......... .......... .......... .......... 139 TTTAATTTTG ACGAATTTAT GGAGTAATTT TTTGAAGAAT GTGTTGTTTT GGGTTAGGTA 22383 .......... .......... .......... .......... .......... .......... 139 TGGTTGAGAT TTTGAAATAG TTTTTAAAAA ACATTTTGTG TTTTTTTGTG AAGGTATGGA 22323 ||||||| .......... .......... .......... .......... .......... ...GTATGGA 146 GAGTGATGAT GAGATCAGAA GAGTGCCGGA GATGGGCGGA GAAGCGACGG GGACAACGTC 22263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGATGAT GAGATCAGAA GAGTGCCGGA GATGGGCGGA GAAGCGACGG GGACAACGTC 206 AGCTTCTGGA AGAGATGGAG TATCGGCCGC CGGTCAAGCT CAACCATCAG CTGGGACTCA 22203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCTGGA AGAGATGGAG TATCGGCCGC CGGTCAAGCT CAACCATCAG CTGGGACTCA 266 AAGGAAGAGA GGAAGAAGCC CAGCTGACAA AGAAAACAAA AGGTTAAAAA GGTAAAAACC 22143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AAGGAAGAGA GGAAGAAGCC CAGCTGACAA AGAAAACAAA AGGTTAAAAA G......... 317 TTAAACATCA TGCCACGTAG GTGTATCTAC TTGTCACATG TTATGGGCTT CCACACTTTC 22083 .......... .......... .......... .......... .......... .......... 317 TTTTTTTGGA TAGCAGTGGC ATTTTAGTTA ATATTGTATT TTTTTTTGGT GGGGTTGAAA 22023 .......... .......... .......... .......... .......... .......... 317 AAGATTGTTG AGAAATAGAG TATCAGCACA ACAAGCAAGG GAGAGGAAGA AAGCATATTT 21963 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ATTGTTG AGAAATAGAG TATCAGCACA ACAAGCAAGG GAGAGGAAGA AAGCATATTT 374 GATAGATCTG GAAGCAAGGG TGAAGGAATT GGAAACAAAG AATGCAGAAC TTGAAGAGAG 21903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGATCTG GAAGCAAGGG TGAAGGAATT GGAAACAAAG AATGCAGAAC TTGAAGAGAG 434 GTTGTCTACT TTGCAAAATG AGAACCAAAT GCTTAGACAT GTAAACATTC TTCTCTCTAC 21843 |||||||||| |||||||||| |||||||||| |||||||||| GTTGTCTACT TTGCAAAATG AGAACCAAAT GCTTAGACAT .......... .......... 474 TTCTATTTTT GCAATAGAAT TGTTCATCTA TATATCCTAT ATGCTTGAAC GTGTGCCATG 21783 .......... .......... .......... .......... .......... .......... 474 TCCGGTCTAA TTACTATTCA GATACTTCTT CCACTTACCT CTATTTCTAC TGAATCCATT 21723 .......... .......... .......... .......... .......... .......... 474 CACAGCCAAA CTCTCACCTC CCCCCGCATT TCTACATTCG TGCATCTTTC TCTTCACATA 21663 .......... .......... .......... .......... .......... .......... 474 TCTGAATCTC TTCCCGCATC TTATTCTCTT TCGAAACCAC ACTCAGCTTG TTTCAACTGT 21603 .......... .......... .......... .......... .......... .......... 474 CCTGATTTTA TTCTATATCT CCTAGTATAT GTGTCCACAC ATCCATCACA ATATCTTCAT 21543 .......... .......... .......... .......... .......... .......... 474 TTCCACAACT TTCATCTTTT GAACGTGAGA GTGCTCAACT ACATGTACTT GCAAAGGCGT 21483 .......... .......... .......... .......... .......... .......... 474 ATTCAGGATT TCGGCAAAAT GGATGCACAA TTACGAATAA AATGCATCTT AAATATAAAT 21423 .......... .......... .......... .......... .......... .......... 474 TTGATCAATT TGACTTTAAA GTTTCTAATA TAAAACCATT AAACTTTTAA AATTGTAGGT 21363 .......... .......... .......... .......... .......... .......... 474 GCAAAATATA TAATACTACT AGTTTAAATT TTAATGCACA CATTTGATTT AATTATACAT 21303 .......... .......... .......... .......... .......... .......... 474 ATAAAATATT TTTTAGGAAT TTTTAATGTA ATACACTTCA AAATTTTTGA AAAAATTAAG 21243 .......... .......... .......... .......... .......... .......... 474 GAAAAAAAAA GAAGAAAAAT TAGTTAAAAC GCTAAAAGTA TATAACCAAT AACTACTTGT 21183 .......... .......... .......... .......... .......... .......... 474 AGAGGTGCTA CTTAAAAAGA CAAGATAGAT ATCTAAGATT TTAATTTCTA TCCTCACAGA 21123 .......... .......... .......... .......... .......... .......... 474 GGTGCACCCA ATCATCGTCA TCATATTATT ATACGATACT TTAACTGTGG GTTCACACAT 21063 .......... .......... .......... .......... .......... .......... 474 CTATATTTAA ATATTTTTCT TAAAATATAA CACTATTATA TTTGATCTAG AGATGGTAGC 21003 .......... .......... .......... .......... .......... .......... 474 ATGGGTTCAT GTGAACCCAT GACACCCCCT CTAGATATGC CCCTGTATAC TCAACCCCAT 20943 .......... .......... .......... .......... .......... .......... 474 ACGACATAGT TGGTCTAACC GTCACTATGT AGAATTTCTC TTTATGTTTT GGTGGAACCT 20883 .......... .......... .......... .......... .......... .......... 474 TCTTATCACT AGCAACTCAG ATGCAAGTCT CTATGTCATA CACGTTGCAC CAATACAGTG 20823 .......... .......... .......... .......... .......... .......... 474 AGTGACATCC TCGTCAATCA CCCCATTTTC TTGGATAACG GACCAATATA CTTGAATAGA 20763 .......... .......... .......... .......... .......... .......... 474 GTATAGCACC AAAAGTTGTG GTCTATTGTT CAATGAAGAA GTTGAGAGCC ATGAGATCTC 20703 .......... .......... .......... .......... .......... .......... 474 AAGTTCAAAT TCAATAGAGT AAAAGAGCTA CTAGGTGATT GTTTCTGTAT GTTCTAGCCT 20643 .......... .......... .......... .......... .......... .......... 474 TGGTGAATAT AGTTACCTGG TATTTGATGC TGGTTGGAGG TGATGATAGG TATCTCGGGT 20583 .......... .......... .......... .......... .......... .......... 474 AATTAGTTAA GGTGCGGGAA AGCAGCCTTA AAAATAAATT AGATGAATGG GGGGATTATC 20523 .......... .......... .......... .......... .......... .......... 474 CAGAAACAAT TTATAAGCTC AGTCATTTCT TTGGTTTAGC TCACTCTTAT ATCGGGCTTT 20463 .......... .......... .......... .......... .......... .......... 474 TGTTATGTCC CATCAATTAT TTATTAAACA TTGAAGACGA GGAGACAAAC TATGAATTAT 20403 .......... .......... .......... .......... .......... .......... 474 CAACAATATG CTGTGACTTC AGCCTCCTGA AGTTACATTA GTATTATGTA ATTTATGTGC 20343 .......... .......... .......... .......... .......... .......... 474 AGTAGAAATG TACTAGCGTA TGAACATAGA TCAAAGCATG GAAGCTTTCT CACCTTCTAT 20283 .......... .......... .......... .......... .......... .......... 474 ATTCCCCAAT ATGCATTATA CTGCCCATCA TATGTGTACA GAGCATTTAA GCTGAACATA 20223 .......... .......... .......... .......... .......... .......... 474 TAATGTATGA ATGAAGTGTT CTTGTATCTT CCATAGTATA TCTGGTAGCG AGAGATGTAA 20163 .......... .......... .......... .......... .......... .......... 474 AGAATTGCGT AATCATCCAT GATATATGAT GTCAGCTTTC TACTCTTAGT TATTACCTTG 20103 .......... .......... .......... .......... .......... .......... 474 TAGTAAATCT AAGAACTACG CTCATGTTAA TTGGGAAGTG TAGAGATTAC TTGGGTAAAA 20043 .......... .......... .......... .......... .......... .......... 474 CTCTCAAGGC TTGTCTGCAT GAACATGTAA TACCAGTAAC CGGTTCCTAT AAATTTCGAC 19983 .......... .......... .......... .......... .......... .......... 474 CTTGAGCATG TGTTGTATCT ATACACATCT TTCAGCCTGT ATTTAAGTCA CAGGCGTGGC 19923 .......... .......... .......... .......... .......... .......... 474 TATTTCATAT TAACCCTTTC TTATACACTT CCCCTCTTGC CGGTTAAGAT TGGTACTTAT 19863 .......... .......... .......... .......... .......... .......... 474 CTAGTAGAAT AACTATAAGA TGAGTCTTGC TGAAAATCAA TAAAGACAAC TTAGAAATAA 19803 .......... .......... .......... .......... .......... .......... 474 CAACTCTATG TGACTATCAG TCAAATCTTG GATTTATCAT GATTAAACAT CTAATTGTTG 19743 .......... .......... .......... .......... .......... .......... 474 GAATGCCATT GACCTGATTG ACAAAACATC AACTTTCATG ATTTCATATT GCATATCCAA 19683 .......... .......... .......... .......... .......... .......... 474 TCCGCCTATA AGAATCTCCA AAGACCACAC AAAAAGGAAT TCAAATGCTT CAATCTTTCC 19623 .......... .......... .......... .......... .......... .......... 474 ATGCTGTAAA TTTGCTTTCT TCAGAGATGG CCAAAAAGAA AACGGTGTAT ATTTGGGGTT 19563 .......... .......... .......... .......... .......... .......... 474 TGACTTCTTT TGTTATAATC TGCAGATACT GAAGAACACA ACAGCAGGTG CACAGGAAGG 19503 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATACT GAAGAACACA ACAGCAGGTG CACAGGAAGG 509 GAGGAAGTAG ACATATGATC GATCTTATGT CGATATGTCA GCATTCTTGT TTAGATCCTA 19443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAGTAG ACATATGATC GATCTTATGT CGATATGTCA GCATTCTTGT TTAGATCCTA 569 TGTAGGCACT GAAGAGAAAT TCTCTTCTGG ATTTGAGAAT GCATGCTAGT TTCGGGTGGA 19383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGGCACT GAAGAGAAAT TCTCTTCTGG ATTTGAGAAT GCATGCTAGT TTCGGGTGGA 629 TTGTTCTGAT TTGATGCATT GCA 19360 |||||||||| |||||||||| ||| TTGTTCTGAT TTGATGCATT GCA 652 hqPGS_C08HBa0027D09.1-_SGN-E377730+ (22622 22484,22329 22152,22019 21863,19537 19360) ******************************************************************************** EST sequence 223 +strand 555 n (File: SGN-E231929+) 1 ACTTTTCCCT TAATTTAGTG TTTTTTTCAA GTGTAGAGAA AAATGCAAGA GCAAGCGACG 61 AGTTCTATTG CCGCTAGTTC ACTACCTTCA AGTAGTGAGA GATCATCTAG TTCAGCTTTA 121 CATCATGAAC TCAAAGAAGG TATGGAGAGT GATGATGAGA TCAGAAGAGT GCCGGAGATG 181 GGCGGAGAAG CGACTGGGAC AACGTCAGCT TCTGGAAGAG ATGGAGTATC GGCCGCCGGT 241 CAAGCTCAAC CATCAGCTGG GACTCAAAGG AAGAGAGGAA GAAGCCCAGC TGACAAAGAA 301 AACAAAAGGT TAAAAAGATT GTTGAGAAAT AGAGTATGAG CACAACAAGC AAGGGAGAGG 361 AAGAAAGCAT ATTTGATTGA TCTGGAAGCA AGGGTGAAGG AATTGGAAAC AACGAATGCA 421 GAACTTGAAG AGAGGTTGTC TACTTCGCCA AATGAGAACC AAATGCTTAG ACATATACTG 481 AAGAACACAA CAGCATGTGC ACAGGAAGGG AGGAAGTANA CATATGATCG ATCTTATGTC 541 GATATGTCAG CATTC Predicted gene structure (within gDNA segment 23222 to 18847): Exon 1 22622 22484 ( 139 n); cDNA 1 139 ( 139 n); score: 1.000 Intron 1 22483 22330 ( 154 n); Pd: 0.997 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 22329 22152 ( 178 n); cDNA 140 317 ( 178 n); score: 0.994 Intron 2 22151 22020 ( 132 n); Pd: 0.996 (s: 1.00), Pa: 0.993 (s: 0.98) Exon 3 22019 21863 ( 157 n); cDNA 318 474 ( 157 n); score: 0.968 Intron 3 21862 19538 (2325 n); Pd: 0.994 (s: 0.96), Pa: 0.999 (s: 0.96) Exon 4 19537 19457 ( 81 n); cDNA 475 555 ( 81 n); score: 0.975 MATCH C08HBa0027D09.1- SGN-E231929+ 0.986 555 1.000 C PGS_C08HBa0027D09.1-_SGN-E231929+ (22622 22484,22329 22152,22019 21863,19537 19457) Alignment (genomic DNA sequence = upper lines): ACTTTTCCCT TAATTTAGTG TTTTTTTCAA GTGTAGAGAA AAATGCAAGA GCAAGCGACG 22563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTCCCT TAATTTAGTG TTTTTTTCAA GTGTAGAGAA AAATGCAAGA GCAAGCGACG 60 AGTTCTATTG CCGCTAGTTC ACTACCTTCA AGTAGTGAGA GATCATCTAG TTCAGCTTTA 22503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTATTG CCGCTAGTTC ACTACCTTCA AGTAGTGAGA GATCATCTAG TTCAGCTTTA 120 CATCATGAAC TCAAAGAAGG TAATCTTTTT TAAAAAAAAT TTAAATCCAG CTTTTTAACA 22443 |||||||||| ||||||||| CATCATGAAC TCAAAGAAG. .......... .......... .......... .......... 139 TTTAATTTTG ACGAATTTAT GGAGTAATTT TTTGAAGAAT GTGTTGTTTT GGGTTAGGTA 22383 .......... .......... .......... .......... .......... .......... 139 TGGTTGAGAT TTTGAAATAG TTTTTAAAAA ACATTTTGTG TTTTTTTGTG AAGGTATGGA 22323 ||||||| .......... .......... .......... .......... .......... ...GTATGGA 146 GAGTGATGAT GAGATCAGAA GAGTGCCGGA GATGGGCGGA GAAGCGACGG GGACAACGTC 22263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GAGTGATGAT GAGATCAGAA GAGTGCCGGA GATGGGCGGA GAAGCGACTG GGACAACGTC 206 AGCTTCTGGA AGAGATGGAG TATCGGCCGC CGGTCAAGCT CAACCATCAG CTGGGACTCA 22203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCTGGA AGAGATGGAG TATCGGCCGC CGGTCAAGCT CAACCATCAG CTGGGACTCA 266 AAGGAAGAGA GGAAGAAGCC CAGCTGACAA AGAAAACAAA AGGTTAAAAA GGTAAAAACC 22143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AAGGAAGAGA GGAAGAAGCC CAGCTGACAA AGAAAACAAA AGGTTAAAAA G......... 317 TTAAACATCA TGCCACGTAG GTGTATCTAC TTGTCACATG TTATGGGCTT CCACACTTTC 22083 .......... .......... .......... .......... .......... .......... 317 TTTTTTTGGA TAGCAGTGGC ATTTTAGTTA ATATTGTATT TTTTTTTGGT GGGGTTGAAA 22023 .......... .......... .......... .......... .......... .......... 317 AAGATTGTTG AGAAATAGAG TATCAGCACA ACAAGCAAGG GAGAGGAAGA AAGCATATTT 21963 ||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ...ATTGTTG AGAAATAGAG TATGAGCACA ACAAGCAAGG GAGAGGAAGA AAGCATATTT 374 GATAGATCTG GAAGCAAGGG TGAAGGAATT GGAAACAAAG AATGCAGAAC TTGAAGAGAG 21903 ||| |||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GATTGATCTG GAAGCAAGGG TGAAGGAATT GGAAACAACG AATGCAGAAC TTGAAGAGAG 434 GTTGTCTACT TTGCAAAATG AGAACCAAAT GCTTAGACAT GTAAACATTC TTCTCTCTAC 21843 |||||||||| | || ||||| |||||||||| |||||||||| GTTGTCTACT TCGCCAAATG AGAACCAAAT GCTTAGACAT .......... .......... 474 TTCTATTTTT GCAATAGAAT TGTTCATCTA TATATCCTAT ATGCTTGAAC GTGTGCCATG 21783 .......... .......... .......... .......... .......... .......... 474 TCCGGTCTAA TTACTATTCA GATACTTCTT CCACTTACCT CTATTTCTAC TGAATCCATT 21723 .......... .......... .......... .......... .......... .......... 474 CACAGCCAAA CTCTCACCTC CCCCCGCATT TCTACATTCG TGCATCTTTC TCTTCACATA 21663 .......... .......... .......... .......... .......... .......... 474 TCTGAATCTC TTCCCGCATC TTATTCTCTT TCGAAACCAC ACTCAGCTTG TTTCAACTGT 21603 .......... .......... .......... .......... .......... .......... 474 CCTGATTTTA TTCTATATCT CCTAGTATAT GTGTCCACAC ATCCATCACA ATATCTTCAT 21543 .......... .......... .......... .......... .......... .......... 474 TTCCACAACT TTCATCTTTT GAACGTGAGA GTGCTCAACT ACATGTACTT GCAAAGGCGT 21483 .......... .......... .......... .......... .......... .......... 474 ATTCAGGATT TCGGCAAAAT GGATGCACAA TTACGAATAA AATGCATCTT AAATATAAAT 21423 .......... .......... .......... .......... .......... .......... 474 TTGATCAATT TGACTTTAAA GTTTCTAATA TAAAACCATT AAACTTTTAA AATTGTAGGT 21363 .......... .......... .......... .......... .......... .......... 474 GCAAAATATA TAATACTACT AGTTTAAATT TTAATGCACA CATTTGATTT AATTATACAT 21303 .......... .......... .......... .......... .......... .......... 474 ATAAAATATT TTTTAGGAAT TTTTAATGTA ATACACTTCA AAATTTTTGA AAAAATTAAG 21243 .......... .......... .......... .......... .......... .......... 474 GAAAAAAAAA GAAGAAAAAT TAGTTAAAAC GCTAAAAGTA TATAACCAAT AACTACTTGT 21183 .......... .......... .......... .......... .......... .......... 474 AGAGGTGCTA CTTAAAAAGA CAAGATAGAT ATCTAAGATT TTAATTTCTA TCCTCACAGA 21123 .......... .......... .......... .......... .......... .......... 474 GGTGCACCCA ATCATCGTCA TCATATTATT ATACGATACT TTAACTGTGG GTTCACACAT 21063 .......... .......... .......... .......... .......... .......... 474 CTATATTTAA ATATTTTTCT TAAAATATAA CACTATTATA TTTGATCTAG AGATGGTAGC 21003 .......... .......... .......... .......... .......... .......... 474 ATGGGTTCAT GTGAACCCAT GACACCCCCT CTAGATATGC CCCTGTATAC TCAACCCCAT 20943 .......... .......... .......... .......... .......... .......... 474 ACGACATAGT TGGTCTAACC GTCACTATGT AGAATTTCTC TTTATGTTTT GGTGGAACCT 20883 .......... .......... .......... .......... .......... .......... 474 TCTTATCACT AGCAACTCAG ATGCAAGTCT CTATGTCATA CACGTTGCAC CAATACAGTG 20823 .......... .......... .......... .......... .......... .......... 474 AGTGACATCC TCGTCAATCA CCCCATTTTC TTGGATAACG GACCAATATA CTTGAATAGA 20763 .......... .......... .......... .......... .......... .......... 474 GTATAGCACC AAAAGTTGTG GTCTATTGTT CAATGAAGAA GTTGAGAGCC ATGAGATCTC 20703 .......... .......... .......... .......... .......... .......... 474 AAGTTCAAAT TCAATAGAGT AAAAGAGCTA CTAGGTGATT GTTTCTGTAT GTTCTAGCCT 20643 .......... .......... .......... .......... .......... .......... 474 TGGTGAATAT AGTTACCTGG TATTTGATGC TGGTTGGAGG TGATGATAGG TATCTCGGGT 20583 .......... .......... .......... .......... .......... .......... 474 AATTAGTTAA GGTGCGGGAA AGCAGCCTTA AAAATAAATT AGATGAATGG GGGGATTATC 20523 .......... .......... .......... .......... .......... .......... 474 CAGAAACAAT TTATAAGCTC AGTCATTTCT TTGGTTTAGC TCACTCTTAT ATCGGGCTTT 20463 .......... .......... .......... .......... .......... .......... 474 TGTTATGTCC CATCAATTAT TTATTAAACA TTGAAGACGA GGAGACAAAC TATGAATTAT 20403 .......... .......... .......... .......... .......... .......... 474 CAACAATATG CTGTGACTTC AGCCTCCTGA AGTTACATTA GTATTATGTA ATTTATGTGC 20343 .......... .......... .......... .......... .......... .......... 474 AGTAGAAATG TACTAGCGTA TGAACATAGA TCAAAGCATG GAAGCTTTCT CACCTTCTAT 20283 .......... .......... .......... .......... .......... .......... 474 ATTCCCCAAT ATGCATTATA CTGCCCATCA TATGTGTACA GAGCATTTAA GCTGAACATA 20223 .......... .......... .......... .......... .......... .......... 474 TAATGTATGA ATGAAGTGTT CTTGTATCTT CCATAGTATA TCTGGTAGCG AGAGATGTAA 20163 .......... .......... .......... .......... .......... .......... 474 AGAATTGCGT AATCATCCAT GATATATGAT GTCAGCTTTC TACTCTTAGT TATTACCTTG 20103 .......... .......... .......... .......... .......... .......... 474 TAGTAAATCT AAGAACTACG CTCATGTTAA TTGGGAAGTG TAGAGATTAC TTGGGTAAAA 20043 .......... .......... .......... .......... .......... .......... 474 CTCTCAAGGC TTGTCTGCAT GAACATGTAA TACCAGTAAC CGGTTCCTAT AAATTTCGAC 19983 .......... .......... .......... .......... .......... .......... 474 CTTGAGCATG TGTTGTATCT ATACACATCT TTCAGCCTGT ATTTAAGTCA CAGGCGTGGC 19923 .......... .......... .......... .......... .......... .......... 474 TATTTCATAT TAACCCTTTC TTATACACTT CCCCTCTTGC CGGTTAAGAT TGGTACTTAT 19863 .......... .......... .......... .......... .......... .......... 474 CTAGTAGAAT AACTATAAGA TGAGTCTTGC TGAAAATCAA TAAAGACAAC TTAGAAATAA 19803 .......... .......... .......... .......... .......... .......... 474 CAACTCTATG TGACTATCAG TCAAATCTTG GATTTATCAT GATTAAACAT CTAATTGTTG 19743 .......... .......... .......... .......... .......... .......... 474 GAATGCCATT GACCTGATTG ACAAAACATC AACTTTCATG ATTTCATATT GCATATCCAA 19683 .......... .......... .......... .......... .......... .......... 474 TCCGCCTATA AGAATCTCCA AAGACCACAC AAAAAGGAAT TCAAATGCTT CAATCTTTCC 19623 .......... .......... .......... .......... .......... .......... 474 ATGCTGTAAA TTTGCTTTCT TCAGAGATGG CCAAAAAGAA AACGGTGTAT ATTTGGGGTT 19563 .......... .......... .......... .......... .......... .......... 474 TGACTTCTTT TGTTATAATC TGCAGATACT GAAGAACACA ACAGCAGGTG CACAGGAAGG 19503 ||||| |||||||||| |||||| ||| |||||||||| .......... .......... .....ATACT GAAGAACACA ACAGCATGTG CACAGGAAGG 509 GAGGAAGTAG ACATATGATC GATCTTATGT CGATATGTCA GCATTC 19457 ||||||||| |||||||||| |||||||||| |||||||||| |||||| GAGGAAGTAN ACATATGATC GATCTTATGT CGATATGTCA GCATTC 555 hqPGS_C08HBa0027D09.1-_SGN-E231929+ (22622 22484,22329 22152,22019 21863,19537 19457) ******************************************************************************** EST sequence 196 +strand 474 n (File: SGN-E251111+) 1 CTTAATTTAG TGTTTTTTTC AAGTGTAGAG AAAAATGCAA GAGCAAGCGA CGAGTTCTAT 61 TGCCGCTAGT TCACTACCTT CAAGTAGTGA GAGATCATCT AGTTCAGCTT TACATCATGA 121 ACTCAAAGAA GGTATGGAGA GTGATGATGA GATCAGAAGA GTGCCGGAGA TGGGCGGAGA 181 AGCGACGGGG ACAACGTCAG CTTCTGGAAG AGATGGAGTA TCGGCCGCCG GTCAAGCTCA 241 ACCATCAGCT GGGACTCAAA GGAAGAGAGG AAGAAGCCCA GCTGACAAAG AAAACAAAAG 301 GTTAAAAAGA TTGTTGAGAA ATAGAGTATC AGCACAACAA GCAAGGGAGA GGAAGAAAGC 361 ATATTTGATA GATCTGGAAG CAAGGGTGAA GGAATTGGAA ACAAAGAATG CAGAACTTGA 421 AGAGAGGTTG TCTTACTTTG CAAAATGAGA ACCAAATGCT TAGACATATA CTGA Predicted gene structure (within gDNA segment 23214 to 21183): Exon 1 22614 22484 ( 131 n); cDNA 1 131 ( 131 n); score: 1.000 Intron 1 22483 22330 ( 154 n); Pd: 0.997 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 22329 22152 ( 178 n); cDNA 132 309 ( 178 n); score: 1.000 Intron 2 22151 22020 ( 132 n); Pd: 0.996 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 22019 21863 ( 157 n); cDNA 310 467 ( 158 n); score: 0.984 Intron 3 21862 21762 ( 101 n); Pd: 0.994 (s: 0.95), Pa: 0.876 (s: 0) Exon 4 21761 21757 ( 5 n); cDNA 468 472 ( 5 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E251111+ 0.995 471 0.994 C PGS_C08HBa0027D09.1-_SGN-E251111+ (22614 22484,22329 22152,22019 21863,21761 21757) Alignment (genomic DNA sequence = upper lines): CTTAATTTAG TGTTTTTTTC AAGTGTAGAG AAAAATGCAA GAGCAAGCGA CGAGTTCTAT 22555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAATTTAG TGTTTTTTTC AAGTGTAGAG AAAAATGCAA GAGCAAGCGA CGAGTTCTAT 60 TGCCGCTAGT TCACTACCTT CAAGTAGTGA GAGATCATCT AGTTCAGCTT TACATCATGA 22495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGCTAGT TCACTACCTT CAAGTAGTGA GAGATCATCT AGTTCAGCTT TACATCATGA 120 ACTCAAAGAA GGTAATCTTT TTTAAAAAAA ATTTAAATCC AGCTTTTTAA CATTTAATTT 22435 |||||||||| | ACTCAAAGAA G......... .......... .......... .......... .......... 131 TGACGAATTT ATGGAGTAAT TTTTTGAAGA ATGTGTTGTT TTGGGTTAGG TATGGTTGAG 22375 .......... .......... .......... .......... .......... .......... 131 ATTTTGAAAT AGTTTTTAAA AAACATTTTG TGTTTTTTTG TGAAGGTATG GAGAGTGATG 22315 ||||| |||||||||| .......... .......... .......... .......... .....GTATG GAGAGTGATG 146 ATGAGATCAG AAGAGTGCCG GAGATGGGCG GAGAAGCGAC GGGGACAACG TCAGCTTCTG 22255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGATCAG AAGAGTGCCG GAGATGGGCG GAGAAGCGAC GGGGACAACG TCAGCTTCTG 206 GAAGAGATGG AGTATCGGCC GCCGGTCAAG CTCAACCATC AGCTGGGACT CAAAGGAAGA 22195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGATGG AGTATCGGCC GCCGGTCAAG CTCAACCATC AGCTGGGACT CAAAGGAAGA 266 GAGGAAGAAG CCCAGCTGAC AAAGAAAACA AAAGGTTAAA AAGGTAAAAA CCTTAAACAT 22135 |||||||||| |||||||||| |||||||||| |||||||||| ||| GAGGAAGAAG CCCAGCTGAC AAAGAAAACA AAAGGTTAAA AAG....... .......... 309 CATGCCACGT AGGTGTATCT ACTTGTCACA TGTTATGGGC TTCCACACTT TCTTTTTTTG 22075 .......... .......... .......... .......... .......... .......... 309 GATAGCAGTG GCATTTTAGT TAATATTGTA TTTTTTTTTG GTGGGGTTGA AAAAGATTGT 22015 ||||| .......... .......... .......... .......... .......... .....ATTGT 314 TGAGAAATAG AGTATCAGCA CAACAAGCAA GGGAGAGGAA GAAAGCATAT TTGATAGATC 21955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAAATAG AGTATCAGCA CAACAAGCAA GGGAGAGGAA GAAAGCATAT TTGATAGATC 374 TGGAAGCAAG GGTGAAGGAA TTGGAAACAA AGAATGCAGA ACTTGAAGAG AGGTTGTC-T 21896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TGGAAGCAAG GGTGAAGGAA TTGGAAACAA AGAATGCAGA ACTTGAAGAG AGGTTGTCTT 434 ACTTTGCAAA ATGAGAACCA AATGCTTAGA CATGTAAACA TTCTTCTCTC TACTTCTATT 21836 |||||||||| |||||||||| |||||||||| ||| ACTTTGCAAA ATGAGAACCA AATGCTTAGA CAT....... .......... .......... 467 TTTGCAATAG AATTGTTCAT CTATATATCC TATATGCTTG AACGTGTGCC ATGTCCGGTC 21776 .......... .......... .......... .......... .......... .......... 467 TAATTACTAT TCAGATACT 21757 ||||| .......... ....ATACT 472 hqPGS_C08HBa0027D09.1-_SGN-E251111+ (22614 22484,22329 22152,22019 21863,21761 21757) ******************************************************************************** EST sequence 228 +strand 436 n (File: SGN-E289418+) 1 GAGAGATCAT CTAGTTCAGC TCTACATCAT GAACTCAAAG AATGTATGGA GAGTGATGAT 61 GAGATCAGAA GAGTGCCGGA GATGGGCGGA GAAGCGACGG GGACAACGTC AGCTTCTGGA 121 AGAGATGGAG TATCGGCCGC CGGTCAAGCT CAACCATCAG CTGGGACTCA AAGGAAGAGA 181 GGAAGAAGCC CAGCTGACAA AGAAAACAAA AGGTTAAAAA GATTGTTGAG AAATAGAGTA 241 TCAGCACAAC AAGCAAGGGA GAGGAAGAAA GCATATTTGA TAGATCTGGA AGCACGGGTG 301 AAGGAATTGG CAACAAAGAA TGCAGAACTT GAAGAGAGGT TGTCTACTTT GCAAAATGAG 361 AACCAAATGC TTAGACATAT ACTGGAGAAC ACAACAGCAG GTGCACATGA AGGGAGGAAG 421 TGGACATATG ATCGAT Predicted gene structure (within gDNA segment 23126 to 20673): Exon 1 22526 22484 ( 43 n); cDNA 1 43 ( 43 n); score: 0.953 Intron 1 22483 22330 ( 154 n); Pd: 0.997 (s: 0.95), Pa: 1.000 (s: 1.00) Exon 2 22329 22152 ( 178 n); cDNA 44 221 ( 178 n); score: 1.000 Intron 2 22151 22020 ( 132 n); Pd: 0.996 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 22019 21863 ( 157 n); cDNA 222 378 ( 157 n); score: 0.987 MATCH C08HBa0027D09.1- SGN-E289418+ 0.994 378 0.867 C PGS_C08HBa0027D09.1-_SGN-E289418+ (22526 22484,22329 22152,22019 21863) Alignment (genomic DNA sequence = upper lines): GAGAGATCAT CTAGTTCAGC TTTACATCAT GAACTCAAAG AAGGTAATCT TTTTTAAAAA 22467 |||||||||| |||||||||| | |||||||| |||||||||| || GAGAGATCAT CTAGTTCAGC TCTACATCAT GAACTCAAAG AAT....... .......... 43 AAATTTAAAT CCAGCTTTTT AACATTTAAT TTTGACGAAT TTATGGAGTA ATTTTTTGAA 22407 .......... .......... .......... .......... .......... .......... 43 GAATGTGTTG TTTTGGGTTA GGTATGGTTG AGATTTTGAA ATAGTTTTTA AAAAACATTT 22347 .......... .......... .......... .......... .......... .......... 43 TGTGTTTTTT TGTGAAGGTA TGGAGAGTGA TGATGAGATC AGAAGAGTGC CGGAGATGGG 22287 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GTA TGGAGAGTGA TGATGAGATC AGAAGAGTGC CGGAGATGGG 86 CGGAGAAGCG ACGGGGACAA CGTCAGCTTC TGGAAGAGAT GGAGTATCGG CCGCCGGTCA 22227 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGAAGCG ACGGGGACAA CGTCAGCTTC TGGAAGAGAT GGAGTATCGG CCGCCGGTCA 146 AGCTCAACCA TCAGCTGGGA CTCAAAGGAA GAGAGGAAGA AGCCCAGCTG ACAAAGAAAA 22167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCAACCA TCAGCTGGGA CTCAAAGGAA GAGAGGAAGA AGCCCAGCTG ACAAAGAAAA 206 CAAAAGGTTA AAAAGGTAAA AACCTTAAAC ATCATGCCAC GTAGGTGTAT CTACTTGTCA 22107 |||||||||| ||||| CAAAAGGTTA AAAAG..... .......... .......... .......... .......... 221 CATGTTATGG GCTTCCACAC TTTCTTTTTT TGGATAGCAG TGGCATTTTA GTTAATATTG 22047 .......... .......... .......... .......... .......... .......... 221 TATTTTTTTT TGGTGGGGTT GAAAAAGATT GTTGAGAAAT AGAGTATCAG CACAACAAGC 21987 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......ATT GTTGAGAAAT AGAGTATCAG CACAACAAGC 254 AAGGGAGAGG AAGAAAGCAT ATTTGATAGA TCTGGAAGCA AGGGTGAAGG AATTGGAAAC 21927 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| AAGGGAGAGG AAGAAAGCAT ATTTGATAGA TCTGGAAGCA CGGGTGAAGG AATTGGCAAC 314 AAAGAATGCA GAACTTGAAG AGAGGTTGTC TACTTTGCAA AATGAGAACC AAATGCTTAG 21867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGCA GAACTTGAAG AGAGGTTGTC TACTTTGCAA AATGAGAACC AAATGCTTAG 374 ACAT 21863 |||| ACAT 378 hqPGS_C08HBa0027D09.1-_SGN-E289418+ (22526 22484,22329 22152,22019 21863) ******************************************************************************** EST sequence 330 +strand 410 n (File: SGN-E241148+) 1 GAATAAAATA CGAAACTGTA CTTTTCCCTT AATTTAGTGT TTTTTTCAAG TGTAGAGAAA 61 AATGCAAGAG CAAGCGACGA GTTCTATTGC CGCTAGTTCA CTACCTTCAA GTAGTGAGAG 121 ATCATCTAGT TCAGCTTTAC ATCATGAACT CAAAGAAGGT ATGGAGAGTG ATGATGAGAT 181 CAGAAGAGTG CCGGAGATGG GCGGAGAAGC GACGGGGACA ACGTCAGCTT CTGGAAGAGA 241 TGGAGTATCG GCCGCCGGTC AAGCTCAACC ATCAGCTGGG ACTCAAAGGA AGAGAGGAAG 301 AAGCCCAGCT GACAAAGAAA ACAAAAGGTT AAAAAGATTG TTGAGAAATA GAGTATCAGC 361 ACAACAAGCA AGGGAGAGGA AGAAAGCATA TTTGATAGAT CTGGAAGCAA Predicted gene structure (within gDNA segment 23241 to 21336): Exon 1 22641 22484 ( 158 n); cDNA 1 158 ( 158 n); score: 1.000 Intron 1 22483 22330 ( 154 n); Pd: 0.997 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 22329 22152 ( 178 n); cDNA 159 336 ( 178 n); score: 1.000 Intron 2 22151 22020 ( 132 n); Pd: 0.996 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 22019 21946 ( 74 n); cDNA 337 410 ( 74 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E241148+ 1.000 410 1.000 C PGS_C08HBa0027D09.1-_SGN-E241148+ (22641 22484,22329 22152,22019 21946) Alignment (genomic DNA sequence = upper lines): GAATAAAATA CGAAACTGTA CTTTTCCCTT AATTTAGTGT TTTTTTCAAG TGTAGAGAAA 22582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATAAAATA CGAAACTGTA CTTTTCCCTT AATTTAGTGT TTTTTTCAAG TGTAGAGAAA 60 AATGCAAGAG CAAGCGACGA GTTCTATTGC CGCTAGTTCA CTACCTTCAA GTAGTGAGAG 22522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCAAGAG CAAGCGACGA GTTCTATTGC CGCTAGTTCA CTACCTTCAA GTAGTGAGAG 120 ATCATCTAGT TCAGCTTTAC ATCATGAACT CAAAGAAGGT AATCTTTTTT AAAAAAAATT 22462 |||||||||| |||||||||| |||||||||| |||||||| ATCATCTAGT TCAGCTTTAC ATCATGAACT CAAAGAAG.. .......... .......... 158 TAAATCCAGC TTTTTAACAT TTAATTTTGA CGAATTTATG GAGTAATTTT TTGAAGAATG 22402 .......... .......... .......... .......... .......... .......... 158 TGTTGTTTTG GGTTAGGTAT GGTTGAGATT TTGAAATAGT TTTTAAAAAA CATTTTGTGT 22342 .......... .......... .......... .......... .......... .......... 158 TTTTTTGTGA AGGTATGGAG AGTGATGATG AGATCAGAAG AGTGCCGGAG ATGGGCGGAG 22282 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTATGGAG AGTGATGATG AGATCAGAAG AGTGCCGGAG ATGGGCGGAG 206 AAGCGACGGG GACAACGTCA GCTTCTGGAA GAGATGGAGT ATCGGCCGCC GGTCAAGCTC 22222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCGACGGG GACAACGTCA GCTTCTGGAA GAGATGGAGT ATCGGCCGCC GGTCAAGCTC 266 AACCATCAGC TGGGACTCAA AGGAAGAGAG GAAGAAGCCC AGCTGACAAA GAAAACAAAA 22162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCATCAGC TGGGACTCAA AGGAAGAGAG GAAGAAGCCC AGCTGACAAA GAAAACAAAA 326 GGTTAAAAAG GTAAAAACCT TAAACATCAT GCCACGTAGG TGTATCTACT TGTCACATGT 22102 |||||||||| GGTTAAAAAG .......... .......... .......... .......... .......... 336 TATGGGCTTC CACACTTTCT TTTTTTGGAT AGCAGTGGCA TTTTAGTTAA TATTGTATTT 22042 .......... .......... .......... .......... .......... .......... 336 TTTTTTGGTG GGGTTGAAAA AGATTGTTGA GAAATAGAGT ATCAGCACAA CAAGCAAGGG 21982 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..ATTGTTGA GAAATAGAGT ATCAGCACAA CAAGCAAGGG 374 AGAGGAAGAA AGCATATTTG ATAGATCTGG AAGCAA 21946 |||||||||| |||||||||| |||||||||| |||||| AGAGGAAGAA AGCATATTTG ATAGATCTGG AAGCAA 410 hqPGS_C08HBa0027D09.1-_SGN-E241148+ (22641 22484,22329 22152,22019 21946) ******************************************************************************** EST sequence 17 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 24916 to 32456): Exon 1 27520 27935 ( 416 n); cDNA 45 449 ( 405 n); score: 0.822 PPA cDNA 13 1 MATCH C08HBa0027D09.1+ SGN-E370357+ 0.822 416 0.613 C PGS_C08HBa0027D09.1+_SGN-E370357+ (27520 27935) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAAACGAGT CACGAGTGGC ACCCACATTT ATCCTCTTAT GTGAGCAAAC 27579 |||||||||| |||| |||| | | |||||| ||||||| || | |||| ||| |||||| ||| TGTCACGACC CAAATCGAGC CGCAAGTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 104 CAACCAATCT AAACCCCAAA TCATTTACCA ATAATTGAAC CATAATGAAC AGAATACAAT 27639 ||||||| | | |||| | | ||| | | || || |||||| || ||||| ||| CAACCAA--T --A---CAAA --A--T-CCA ACATTTCAA- TATAATG-AC GGAATATAAT 150 GCGGATGATT TAAAACTCAT TAATGAAAAT AGATT-AATA ACTTCTAAAC ACTCAA-TAC 27697 ||||| || | | |||||||| |||||||||| ||| |||| ||||||||| |||||| || GCGGAAGACT T-AAACTCAT TAATGAAAAT CAATTAAATA ACTTCTAAAA ACTCAACAAC 209 --TTATTATT CCCAAAATCT GGAAGTCATC ACCACAAGAA CATCTATCCT CAAATTACTA 27755 ||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TATTATTATC CCCAAAATCT GGAAGTCATC ATCACAAGAA CATCTATCCT CAAATTACTA 269 AATCTAAGAG TATGTAAGAA GCTAAAATAA ATAAACAGCT AGTCTGTGCC AGAACTTCAA 27815 | |||||||| ||| || || |||| ||||| |||| |||| |||| |||| ||||||||| ATTCTAAGAG TATCTAGAAA GCTAGAATAA CTAAAAAGCT AGTCCATGCC GGAACTTCAA 329 GGCGTCAAGA CGTGAAGAAG AAGATCCAGT CCAAGCTAGA AACAATAGCT CACCCTGAAT 27875 ||| |||||| | |||||||| |||||||||| |||||||||| | | ||||| ||| ||||| GGCATCAAGA CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACACTGAAA 389 TCTGGTGTGA TGAAGACTGG CTAGAGTTGA GAACGAGTTG AAGACGATGG CACGCTTGCT 27935 || ||| | | |||||||||| ||||||||| | |||||| ||||||| || ||| ||||| TCCGGTATAA TGAAGACTGG CTAGAGTTGC GGTTGAGTTG AAGACGACGG TACGTTTGCT 449 hqPGS_C08HBa0027D09.1+_SGN-E370357+ (27520 27935) ******************************************************************************** EST sequence 149 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 26606 to 29126): Exon 1 27698 28389 ( 692 n); cDNA 43 730 ( 688 n); score: 0.779 PPA cDNA 18 1 MATCH C08HBa0027D09.1+ SGN-E546506+ 0.779 692 0.948 C PGS_C08HBa0027D09.1+_SGN-E546506+ (27698 28389) Alignment (genomic DNA sequence = upper lines): TTATTATTCC CAAAATCTGG AAGTCATCAC CACAAGAACA TCTATCCTCA AATTACTAAA 27757 ||||||| || |||||||||| ||||||||| |||||||||| ||||| |||| ||||||| || TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTAT-CTCA AATTACTTAA 101 TCTAAGAGTA TGTAAGAAGC TAAAATAAAT AAACAGCTAG TCTGTGCCAG AACTTCAAGG 27817 ||| || | | |||||| | ||||||| | ||| |||||| || |||| | || ||||||| -CTAGGAATG TCTAAGAA-C -AAAATAACT AAAAAGCTAG TCCATGCCGG AAATTCAAGG 158 CGTCAAGACG TGAAGAAGAA GATCCAGTCC AAGCTAGAAA CAATAGCTCA CCCTGAA--T 27875 | ||||||| |||||||||| || ||||||| |||||||| || ||||||| ||||||| | CATCAAGACT TGAAGAAGAA GACCCAGTCC AAGCTAGACG CATTAGCTCA CCCTGAATTT 218 TCTGGTGTGA TGAAGACTGG CTAGAGTTGA GAACGAGTTG AAGACGATGG CACGCTTGCT 27935 || | || |||||||||| ||||| | |||||| ||| || || ||| ||||| TCCGATGAAG TGAAGACTGG CTAGATCTAC TGTTGAGTTG AAGTTGACGG AACGTTTGCT 278 GCACTCCACA AATAAC-AAG AAAAACAAAT ACAAGTAGGG GTCAGTACAA GGCACAAGTA 27994 ||| | |||| |||||| ||| | || | || |||||||| |||||||||| |||| ||| GCATTACACA AATAACAAAG AGGAAAACAT GAAAGTAGGG GTCAGTACAA -CCACACGTA 337 CTGAGTAGGT ATCATCGACC AACTCAAAAT AGAAAGCAAT ATATATCAGA TAATAGTATA 28054 |||||||| | ||||||| || |||||||||| || | || | |||||||| | ||||| | | CTGAGTAGAT ATCATCGGCC AACTCAAAAT AGGGAACAGT ATATATCA-A TAATAATGT- 395 AAATCAACCG TAACACTTAA CAGATGACAA CAACA-AGTA CCATAACCAT TGGCCACAAC 28113 |||||||| || ||| || || | ||| |||| | | | || | | |||| AAATCAACTA CAATACTCAA CATGTAGCAA TAACACCATG AATTCATCAA TAACTACAA- 454 CCAAGCACAT CTATGAGGAC TCAAGCCTCC ACACCATACT CATTTGGGAA ATAGGTTCTT 28173 || || || |||||||| ||||||||| | |||||||| |||||||||| || |||| | CCGAGTTCAC ACATGAGGAC TCAAGCCTCA ATACCATACT CATTTGGGAA TTAAGTTCAT 514 TAGATTGAGT ATATT-AACA TATTTCAAGA TTCATTATTT TTACTATCCT GGTGTCGGAA 28232 |||||||||| ||||| | | | |||||||| |||||||| | || | || ||||||| | TAGATTGAGT ATATTCATTA TCTTTCAAGA TTCATTATCT TTCTTCCTCT TGTGTCGGTA 574 CGTGACACTC CGATCCTCCT CATACTATCC TGGCGTCGGA ACGTGACAC- CCGATCCACT 28291 |||||||||| ||||||| || | |||||| ||| | |||| ||||| ||| ||||||| | CGTGACACTC CGATCCT-CT ATTTCTATCC TGGTGCCGGA ACGTGGCACT CCGATCCTC- 632 ACTACTATCC TGGTGTCGGA ACGTGACACT CCGATCC-TC TACTATCCTG GTGTCGAAAT 28350 | | |||||| |||| |||| ||||| ||| ||||||| | | |||||||| |||||| || A-TTCTATCC TGGTACCGGA ACGTGGCAC- CCGATCCATT TTCTATCCTG GTGTCGGAAC 690 GTGACAC-CC GATCCACTAC TACTATCCTA GTGCCGGAAC 28389 ||||||| || ||||| | | ||||||| || ||||||| GTGACACTCC GATCCTCATA TTCTATCCTG GTACCGGAAC 730 hqPGS_C08HBa0027D09.1+_SGN-E546506+ (27698 28389) ******************************************************************************** EST sequence 57 +strand 686 n (File: SGN-E241789+) 1 ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 61 CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 121 GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 181 AGTACAAACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 241 ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 301 ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 361 GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 421 TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA CGTGTCGGTT CGTGACACCC 481 GATCCCCTAA TACTACGTGT CGGTTCGTTA CACCCGATCT CCTAATACTA CGTGCCGATT 541 CGTGACACCC GATCCATTAA TACTATGTGT CGGTTCGTGA CACCCGATCC ATTAATACTA 601 CGTGTCGGTT CGTGACACCC GATCCCCTAA CCTCATTCTT TTAGTTCATC AAGCCTTCTT 661 TTATACCAAG ACATCATCAT TAACAA Predicted gene structure (within gDNA segment 24679 to 31974): Exon 1 27802 28502 ( 701 n); cDNA 2 685 ( 684 n); score: 0.844 MATCH C08HBa0027D09.1+ SGN-E241789+ 0.844 701 1.022 C PGS_C08HBa0027D09.1+_SGN-E241789+ (27802 28502) Alignment (genomic DNA sequence = upper lines): TGCCAGAACT TCAAGG-CGT CAAGACGTGA AGAAGA-AGA -TCCAGTCCA AGCTAGAAAC 27858 || | || || |||||| | | |||||| ||| | ||| ||| |||||||| |||||| ||| TGTCTGATCT TCAAGGACAT CAAGACATGA ATGAGAGAGA ATCCAGTCCG AGCTAGGAAC 61 AATAGCTCAC CCTGAATTCT GGTGTGATGA AGACTGGCTA GAGTTGAGAA CGAGTTGAAG 27918 |||||||||| |||||| ||| | ||||||| ||||||| || |||||| | ||||||||| AATAGCTCAC CCTGAAATCT GACGTGATGA AGACTGGTTA GAGTTGCGGT TGAGTTGAAG 121 ACGATGGCAC GCTTGCTGCA CTCCACAAAT AACAAGAAAA ACAAATACAA GTAGGGGTCA 27978 |||| || || | |||||||| |||||||| | ||||| || | | | ||| || |||||||||| ACGACGGTAC GTTTGCTGCA CTCCACAATT AACAAAAAGA AAACATAAAA GTAGGGGTCA 181 GTACAAGGCA CAAGTACTGA GTAGGTATCA TCGACCAACT CAAAATAGAA AGCAATATAT 28038 |||||| || | |||||||| |||| ||||| ||| |||||| || |||||| | |||||||| GTACAA-ACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 240 ATCAGATAAT AGTATAAAAT CAACCGTAAC ACTTAACAGA TGACAACAAC AAGTACCATA 28098 |||| ||||| | ||||||| ||||| |||| ||||||||| |||||||||| |||||||||| ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 300 ACCATTGGCC ACAACCCAAG CACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 28158 |||||||| | |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 360 GGGAAATAGG TTCTTTAGAT TGAGTATATT AACATATTTC AAGATTCATT ATTTTTACTA 28218 |||||| ||| ||| ||| || |||||| ||| |||||| ||| |||||||||| ||||||||| GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 420 TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCCTCATACT ATCCTGGCGT CGGAACGTGA 28278 || ||||||| ||||||||| |||||||||| ||| || || | | | || ||| ||||| TCGTGGTGTC GGAACGTGAT ACTCCGATCC -CCTAATGCT A--C--GTGT CGGTTCGTGA 475 CACCCGATCC ACTACTACTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCTACTATCC 28338 |||||||||| ||| ||||| | ||||| || ||| || || |||||| ||| || | CACCCGATCC CCTAATACTA --C--GTGTC GGTTCGTTAC AC-CCGATCT CCTAATA-CT 529 TGGTGTCGAA ATGTGACACC CGATCCACTA CTACTATCCT AGTGCCGGAA CGTGACACCC 28398 ||| ||| |||||||| ||||||| || ||||| | ||| ||| |||||||||| ACGTGCCGAT TCGTGACACC CGATCCATTA ATACTA---T -GTGTCGGTT CGTGACACCC 585 GATCCACTAC TACTATCCTG GTGTCGGAAC GTGACACCCG ATCCATTAAC CTCATTCTTT 28458 |||||| || ||||| | ||||||| | |||||||||| |||| |||| |||||||||| GATCCATTAA TACTA--C-- GTGTCGGTTC GTGACACCCG ATCCCCTAAC CTCATTCTTT 641 TAGTTCATCA AACCTTCTTT TATACTAAGG CATCATCATT AACA 28502 |||||||||| | |||||||| ||||| ||| |||||||||| |||| TAGTTCATCA AGCCTTCTTT TATACCAAGA CATCATCATT AACA 685 hqPGS_C08HBa0027D09.1+_SGN-E241789+ (27802 28502) ******************************************************************************** EST sequence 284 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 26441 to 29900): Exon 1 27843 28244 ( 402 n); cDNA 1 406 ( 406 n); score: 0.789 MATCH C08HBa0027D09.1+ SGN-E246710- 0.789 402 0.836 C PGS_C08HBa0027D09.1+_SGN-E246710- (27843 28244) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAACAATA GCTCACCCTG AA-TTCTGGT GTGATGAAGA CTGGCTAGAG 27901 |||||||||| |||| || || |||||||||| || ||| | | || | |||| |||||| || AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GT-AGTAAGA CTGGCTTGAA 59 TTGAGAACGA GTTGAAGACG ATGGCACGCT TGCTGCACTC CACAAATAA- CAAGAAAAAC 27960 || || |||||| ||| |||||||| | |||||||||| ||||||||| |||||| | TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTGCACTC CACAAATAAA CAAGAAGAGA 119 AAATACAAGT AGGGGTCAGT ACAAGGCACA AGTACTGAGT AGGTATCATC GACCAACTCA 28020 | ||| |||| |||||||||| |||| ||| ||||||||| || ||||||| | |||||||| ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT AGATATCATC GGCCAACTCA 179 AAATAGAAAG CAATATATAT --CAGATAAT AGTATAAAAT CAACCGTAAC ACTTAACAGA 28078 ||||||||| |||||||||| || |||| | ||||||| |||| | | ||| |||| AAATAGAAAT CAATATATAT ACCAAGTAAT ATCATAAAAT CAACTATGAT ACTCAACATG 239 TGACAACAAC AAGTACCATA ACCATTGGCC ACAACC--CA AGCACATCTA TGAGGACTCA 28136 | ||||||| || ||| || | |||| | | ||| || || || | |||||||||| TAGCAACAAC AAATACTAT- ATCATTAACA ATTACCGTCA AGTTCACACA TGAGGACTCA 298 AGCCTCCACA CCATACTCAT TTGGGAAATA GGTTCTTTAG ATTGAGTATA TTAACATATT 28196 |||||| | | |||||||||| ||||||| | |||| |||| |||||||||| ||||||| || AGCCTCAATA CCATACTCAT TTGGGAATCA TGTTCATTAG ATTGAGTATA TTAACATCTT 358 TCAAGATTCA TTATTTTTAC TATCCTGGTG TCGGAACGTG ACACTCCG 28244 |||||||||| |||| |||| | || ||| |||| ||||| |||||||| TCAAGATTCA TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCG 406 hqPGS_C08HBa0027D09.1+_SGN-E246710- (27843 28244) ******************************************************************************** EST sequence 161 -strand 774 n (File: SGN-E349977-) 1 AGTAGATATC ATCGCTAACT CAAAATAGGG AACAATATAT ATCAATAATA ATGTAAATCA 61 ACTACAATAC TCATCATGTA GCAATAGCAA TTTCTTNATC ATTAACAATT ACCGTCAAGT 121 TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 181 GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 241 ACTCCGCTCC TCTATTTCTA TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATATTCAT 301 TCTATCCTGG TACCGGAACG TGGCACCCGA TCCTCATATT CTATCCTGGT GTCGGAACGT 361 AACACTCCGA TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCTCAT 421 ATTCTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT ATTCTATCCT GGTGTCGGAA 481 CGTGACACTC CGATCCTCAT ATTCATTCTA TCCTGGTACC GAAACGTGGC ACCCGATCCC 541 CTAATTCATC AAGCCTTCTT CTACACTAAG GCATCATCAT TCTCATTATA TAATTTATCA 601 AGCCTTCTCT CATACTAAGG CCTCATCAAT CTTATTATAT AATATATCAA GTGAATTAGG 661 GTTCTTTCAA GATTTGGGAT TCAATAGCTT CATCATGCTT TGTTAATTCA TAACAATTTC 721 ATAATCATAA TCATGCAAGC ATACCAATAA GCATATAGAC AGGTTTACAA CATC Predicted gene structure (within gDNA segment 26256 to 31610): Exon 1 27998 28442 ( 445 n); cDNA 1 456 ( 456 n); score: 0.722 MATCH C08HBa0027D09.1+ SGN-E349977- 0.722 445 0.575 C PGS_C08HBa0027D09.1+_SGN-E349977- (27998 28442) Alignment (genomic DNA sequence = upper lines): AGTAGGTATC ATCGACCAAC TCAAAATAGA AAGCAATATA TATCAGATAA TAGTATAAAA 28057 ||||| |||| |||| | ||| ||||||||| | ||||||| ||||| |||| || | | ||| AGTAGATATC ATCG-CTAAC TCAAAATAGG GAACAATATA TATCA-ATAA TAATGT-AAA 57 TCAACCGTAA CACTTAACAG ATGACAACAA CAAGTACCAT AACCATTGGC CACAACC--C 28115 ||||| || ||| | || | ||| | ||| | | | | |||| | | ||| | TCAACTACAA TACTCATCAT GTAGCAATAG CAA-TTTCTT NATCATTAAC AATTACCGTC 116 AAGCACATCT ATGAGGACTC AAGCCTCCAC ACCATACTCA TTTGGGAAAT AGGTTCTTTA 28175 ||| || |||||||||| ||||||| | |||||||||| |||||||| | | |||| ||| AAGTTCACAC ATGAGGACTC AAGCCTCAAT ACCATACTCA TTTGGGAATT AAGTTCATTA 176 GATTGAGTAT ATT-AACATA TTTCAAGATT CATTATTTTT ACTATCCTGG TGTCGGAACG 28234 |||||||||| ||| | || |||||||||| |||||| ||| | || | |||||| ||| GATTGAGTAT ATTCATTATC TTTCAAGATT CATTATCTTT CTTCCTCTTG TGTCGGTACG 236 TGACACTCCG ATCCTCCTCA TACTATCCTG GCGTCGGAAC GTGACAC-CC GATCCAC-TA 28292 |||||||||| |||| || | |||||||| | | |||||| ||| ||| || ||||| | || TGACACTCCG CTCCT-CTAT TTCTATCCTG GTGCCGGAAC GTGGCACTCC GATCCTCATA 295 --C-TACTAT CCTGGTGTCG GAACGTGACA CTCCGATCCT C-TA--CTAT CCTGGTGTCG 28346 | | |||| |||||| || ||||||| || | |||||||| | || |||| |||||||||| TTCATTCTAT CCTGGTACCG GAACGTGGCA C-CCGATCCT CATATTCTAT CCTGGTGTCG 354 AAATGTGACA C-CCGATCCA C-TA--C-TA CTATCCTAGT GCCGGAACGT GACACCCGAT 28401 || || ||| | ||||||| | || | | ||||||| || ||||||||| | |||||||| GAACGTAACA CTCCGATCCT CATATTCATT CTATCCTGGT ACCGGAACGT GGCACCCGAT 414 CCACTACTAC TATCCTGGTG TCGGAACGTG ACAC-CCGAT CC 28442 || | | | |||||||||| |||||||||| |||| ||||| || CCTCATATTC TATCCTGGTG TCGGAACGTG ACACTCCGAT CC 456 hqPGS_C08HBa0027D09.1+_SGN-E349977- (27998 28442) ******************************************************************************** EST sequence 310 -strand 239 n (File: SGN-E391780-) 1 ATCAACAAAT ACTATATCAT TAACAATTAC CGTCAAGTTC ACACATGAGG ACTCAAGCCT 61 CAATACCATA CTCATTTGGG AATCATGTTC ATTAGATTGA GTATATTAAC ATCTTTCAAG 121 ATTCATTATC TTTATTTCTC TTGTGTCGGT ACGTGACACT CCGCTCCCTC AATATTCATT 181 AATCCTCTTG TGTCGGTACG TGACACTCCG ATCCCCTAAA TCTATATGTC GGTTTGTGA Predicted gene structure (within gDNA segment 27076 to 29910): Exon 1 28126 28244 ( 119 n); cDNA 45 163 ( 119 n); score: 0.882 MATCH C08HBa0027D09.1+ SGN-E391780- 0.882 119 0.498 C PGS_C08HBa0027D09.1+_SGN-E391780- (28126 28244) Alignment (genomic DNA sequence = upper lines): ATGAGGACTC AAGCCTCCAC ACCATACTCA TTTGGGAAAT AGGTTCTTTA GATTGAGTAT 28185 |||||||||| ||||||| | |||||||||| |||||||| | |||| ||| |||||||||| ATGAGGACTC AAGCCTCAAT ACCATACTCA TTTGGGAATC ATGTTCATTA GATTGAGTAT 104 ATTAACATAT TTCAAGATTC ATTATTTTTA CTATCCTGGT GTCGGAACGT GACACTCCG 28244 |||||||| | |||||||||| ||||| |||| | || || ||||| |||| ||||||||| ATTAACATCT TTCAAGATTC ATTATCTTTA TTTCTCTTGT GTCGGTACGT GACACTCCG 163 hqPGS_C08HBa0027D09.1+_SGN-E391780- (28126 28244) ******************************************************************************** EST sequence 250 -strand 390 n (File: SGN-E242274-) 1 AATTAATTCA AGGTTATCTC CTTCAACCCC CCAAGTAATT GAATTATTAA CATTAAACCA 61 CTAATTTCAT AATTATAAGC AGGAATAGTC CAAAACGCCC CTTAAAACAT TTAACAAAAA 121 TCCGACCCAG TCAGGGTTAC GCAGTCTGTG ACGACCAGTC GTGCCTGCGA CGGTCCGTCC 181 TGCTGCTTCC GTCACAAAGT TCAGAGATTA AATTTCACTA AGGGTTTGTG ACAGCCCGTC 241 ATGCCTGTGA CGGTCCGTCG TGCCATTTCG TCGCGAAGTT CAGAGAGTCG ATCTCAGTAC 301 CCAAATTTCA GAATTCTAAG TGTTTTGGAA CGAGACACCC TCCACGGTCC GTCGTGCTCA 361 TGACGGTCCG TCGTGGGATC CGTCGACTCA Predicted gene structure (within gDNA segment 27970 to 30336): Exon 1 28862 29210 ( 349 n); cDNA 3 350 ( 348 n); score: 0.867 MATCH C08HBa0027D09.1+ SGN-E242274- 0.867 349 0.895 C PGS_C08HBa0027D09.1+_SGN-E242274- (28862 29210) Alignment (genomic DNA sequence = upper lines): TTATTCCAAG GTTGTCTCCT TTAAC-CCTC AAGTAATTGA ATTATTAACA TTAACCCACT 28920 ||| | |||| ||| |||||| | ||| || | |||||||||| |||||||||| |||| ||||| TTAATTCAAG GTTATCTCCT TCAACCCCCC AAGTAATTGA ATTATTAACA TTAAACCACT 62 AACTTTATAA TTATAAGCAG GAATAGTCCA AAACGCTCAT TAAAAACTTT TAACAGAAAT 28980 || || |||| |||||||||| |||||||||| |||||| | | | ||||| || ||||| |||| AATTTCATAA TTATAAGCAG GAATAGTCCA AAACGCCCCT T-AAAACATT TAACAAAAAT 121 CCGACCCAGT CAGGATTACG CAGTCTGTGA CGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 29040 |||||||||| |||| ||||| |||||||||| || || |||| |||||||||| |||||||||| CCGACCCAGT CAGGGTTACG CAGTCTGTGA CGACCAGTCG TGCCTGCGAC GGTCCGTCCT 181 GCTGAGT-CG TCACAGAGTT CAGAGACTCA ATTCTATTTA AGAGGTCTAT GACGGCCCGT 29099 |||| | || ||||| |||| |||||| | | ||| | || || ||| | | ||| |||||| GCTGCTTCCG TCACAAAGTT CAGAGATTAA ATT-TCACTA AG-GGTTTGT GACAGCCCGT 239 CTTGCCTGCG AAGGTCCGTC CTGCCATTCT GTCGCAAAGT TCAGAGAGTC GATCTCAGTA 29159 | |||||| | | |||||||| ||||||| ||||| |||| |||||||||| |||||||||| CATGCCTGTG ACGGTCCGTC GTGCCATTTC GTCGCGAAGT TCAGAGAGTC GATCTCAGTA 299 CCCAAATTTT CAGAA-TCTA AGTGTTTTGG AACGAGACCC CCTCGACGGT CC 29210 |||||| ||| ||||| |||| |||||||||| |||||||| | |||| ||||| || CCCAAA-TTT CAGAATTCTA AGTGTTTTGG AACGAGACAC CCTCCACGGT CC 350 hqPGS_C08HBa0027D09.1+_SGN-E242274- (28862 29210) ******************************************************************************** EST sequence 222 -strand 542 n (File: SGN-E252199-) 1 CGACCCAGCC TGGGATTACG CAGTCTGTGA CGGTCCGTCC TGCACGTCCG TCACAGAGTT 61 CAGAGACTAG ATTTTTACCA AGGGTCTGTG ACGGCCCATC ACGCCTGTGA CGGTCCGTCC 121 TGCCATTCCG TCACGAAGTT CAGAGAGTCG ATTTCAGTAC CCAAATTTCA GAATTCTAAG 181 TGTTTTGGAA CGAGACCCCC TCGACGGTCC GTCGTGGGAT CCGTCGTCTC AGTCAGTTTT 241 TCCAGAAATA AAATCTGTTA CTCAAAACGA CTAAACAGGT CGTTACAATA GATACCAATT 301 TACCCATCGT TCGTCCCCGA ACGATCACAA GAAGAAAAAC AAGGGCGAAA AGGAGTACCT 361 GAATCTGTAA ACAGGTATGG GTATCTTTCT CGCATATCAA CTTCCTTCTC CCAAGTGGAT 421 TCTTCAACTG GTCGATTCTT CCATTGAACT TTGATAGATG CAATCTCCCT TGACCTCAAT 481 TTGCGGACTT CTCTATCTAA AATGGCAACA GGCTCCTCCT CATAAGACAA ATTCTCATCA 541 AG Predicted gene structure (within gDNA segment 27392 to 30142): Exon 1 29024 29542 ( 519 n); cDNA 25 542 ( 518 n); score: 0.881 MATCH C08HBa0027D09.1+ SGN-E252199- 0.881 519 0.958 C PGS_C08HBa0027D09.1+_SGN-E252199- (29024 29542) Alignment (genomic DNA sequence = upper lines): CTGCGACGGT CCGTCCTGCT GAGTCGTCAC AGAGTTCAGA GACTCAATTC TATTTAAGAG 29083 ||| |||||| ||||||||| |||||| |||||||||| |||| ||| | ||| | CTGTGACGGT CCGTCCTGCA CGTCCGTCAC AGAGTTCAGA GACTAGATTT TTACCAAG-G 83 GTCTATGACG GCCCGTCTTG CCTGCGAAGG TCCGTCCTGC CATTCTGTCG CAAAGTTCAG 29143 |||| ||||| |||| || | |||| || || |||||||||| ||||| ||| | |||||||| GTCTGTGACG GCCCATCACG CCTGTGACGG TCCGTCCTGC CATTCCGTCA CGAAGTTCAG 143 AGAGTCGATC TCAGTACCCA AATTTTCAGA A-TCTAAGTG TTTTGGAACG AGACCCCCTC 29202 ||||||||| |||||||||| || ||||||| | |||||||| |||||||||| |||||||||| AGAGTCGATT TCAGTACCCA AA-TTTCAGA ATTCTAAGTG TTTTGGAACG AGACCCCCTC 202 GACGGTCCGT CGAGGGATCC GTCGACCCAG ACAGTTATTA CCAG-AATAA ACTCTACTTC 29261 |||||||||| || ||||||| |||| | ||| ||||| || |||| ||||| | ||| | | GACGGTCCGT CGTGGGATCC GTCGTCTCAG TCAGTT-TTT CCAGAAATAA AATCTGTTAC 261 TCAAAACGAC TAAACAGGTC GTTACAATAA ATACCAATTT ACCCATCGTT CGTCCTCGAA 29321 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||| |||| TCAAAACGAC TAAACAGGTC GTTACAATAG ATACCAATTT ACCCATCGTT CGTCCCCGAA 321 CGATCACCGG AAGAAAAACA AGGGCGAGAA AGAGTACCTG AGTCTGTAAA AAGGTGTGGA 29381 ||||||| | |||||||||| ||||||| || ||||||||| | |||||||| |||| ||| CGATCACAAG AAGAAAAACA AGGGCGAAAA GGAGTACCTG AATCTGTAAA CAGGTATGGG 381 TATTTTTTTT GCATATCAAC CTCCTTCTCC CAGGTGGACT CTTCAACTGG TCGATTCTTC 29441 ||| ||| | |||||||||| ||||||||| || ||||| | |||||||||| |||||||||| TATCTTTCTC GCATATCAAC TTCCTTCTCC CAAGTGGATT CTTCAACTGG TCGATTCTTC 441 CACTGAACCT TGATTGATGC AATCTCCCTT GACCTCAACT TGCGGACTTC TCTATCTAAG 29501 || ||||| | |||| ||||| |||||||||| |||||||| | |||||||||| ||||||||| CATTGAACTT TGATAGATGC AATCTCCCTT GACCTCAATT TGCGGACTTC TCTATCTAAA 501 ATAGCAACAG GCTCCTCCTC ATAAGACAAA TTCTCATCAA G 29542 || ||||||| |||||||||| |||||||||| |||||||||| | ATGGCAACAG GCTCCTCCTC ATAAGACAAA TTCTCATCAA G 542 hqPGS_C08HBa0027D09.1+_SGN-E252199- (29024 29542) ******************************************************************************** EST sequence 271 -strand 763 n (File: SGN-E354383-) 1 AGAGAGTCGA TTTTCATATC CAAATTCAGA AATTCTAAGT ATGCTGAAAC GATGCACCTT 61 CGACGGGCCG TCGTGCCTGT GACGGTCCGT CGCAGTGCCC GTGGTCTTGG CCAGTTTTTC 121 CAGAATTAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAATAGA TACCAATTTA 181 CCCATCGTTC GTCCCCGAAC GATCAAATGA AGAAAAACAA TGGCGAAAAG GAGTACCTGA 241 ATCTGTAAAC AGATGTGGGT ATTTTTCTTG CATATCTGCC TCCTTCTCCC AAGTAGCTTC 301 TTCAACCGGT CGATTCTTCC ATTGAACTTT GATGGATGCA ATTTCTCTCG ACCTCAACTT 361 GCGAACCTCT CTATCTAAAA TAGCAACTGG TTCCTCCTCA TAAGTCCAAT TCTCACCAAG 421 CGAAACTGAA TCCCAACGGA TGATGTAGTT TCCATCTCCA TGGTATCTTT TCAACATGGA 481 TACATGAAAT ACCGGATGTA CTCCGGACAG CCCTGGAGGT AAGGCTAATT CATAAGCCAC 541 CTCCCCTACT CGCTTTAGTA CCTCAAATGG TCCAATATAC CTTGGACTTA ACTTACCTCT 601 TTTACGAAAC CGCATCACCC CTTTCATTGG CGAGACTTTC AACAAGACTT GTTCGCCCTC 661 CATGAACTCT AAGTCTCTAA CCTTTCGATC TGCATATTCT TTTTGTCTAC TTTGCGCCGC 721 TAGAAGCTTT TCTTGAATAG ACTTCACTTT CTCCATCGAA TCT Predicted gene structure (within gDNA segment 27271 to 33059): Exon 1 29203 29884 ( 682 n); cDNA 81 762 ( 682 n); score: 0.853 MATCH C08HBa0027D09.1+ SGN-E354383- 0.853 682 0.894 C PGS_C08HBa0027D09.1+_SGN-E354383- (29203 29884) Alignment (genomic DNA sequence = upper lines): GACGGTCCGT CGAGGGATCC GTCGACCCAG ACAGTTATTA CCAGAAT-AA ACTCTACTTC 29261 |||||||||| || | || || | | | ||||| || ||||||| || | ||| || | GACGGTCCGT CGCAGTGCCC GTGGTCTTGG CCAGTT-TTT CCAGAATTAA AATCTGCTGC 139 TCAAAACGAC TAAACAGGTC GTTACAATAA ATACCAATTT ACCCATCGTT CGTCCTCGAA 29321 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||| |||| TCAAAACGAC TAAACAGGTC GTTACAATAG ATACCAATTT ACCCATCGTT CGTCCCCGAA 199 CGATCACCGG AAGAAAAACA AGGGCGAGAA AGAGTACCTG AGTCTGTAAA AAGGTGTGGA 29381 |||||| | |||||||||| | ||||| || ||||||||| | |||||||| || ||||| CGATCAAATG AAGAAAAACA ATGGCGAAAA GGAGTACCTG AATCTGTAAA CAGATGTGGG 259 TATTTTTTTT GCATATCAAC CTCCTTCTCC CAGGTGGACT CTTCAACTGG TCGATTCTTC 29441 ||||||| || ||||||| | |||||||||| || || | | ||||||| || |||||||||| TATTTTTCTT GCATATCTGC CTCCTTCTCC CAAGTAGCTT CTTCAACCGG TCGATTCTTC 319 CACTGAACCT TGATTGATGC AATCTCCCTT GACCTCAACT TGCGGACTTC TCTATCTAAG 29501 || ||||| | |||| ||||| ||| || || |||||||||| |||| || || ||||||||| CATTGAACTT TGATGGATGC AATTTCTCTC GACCTCAACT TGCGAACCTC TCTATCTAAA 379 ATAGCAACAG GCTCCTCCTC ATAAGACAAA TTCTCATCAA GCAGAACTGA ATCCCAACGA 29561 |||||||| | | |||||||| ||||| | || |||||| ||| || |||||| ||||||||| ATAGCAACTG GTTCCTCCTC ATAAGTCCAA TTCTCACCAA GCGAAACTGA ATCCCAACGG 439 ATGATGTAGT TTCCATCCCC ATGGTATCTT TTCAACATAG ACACATGAAA TACCGGATGC 29621 |||||||||| ||||||| || |||||||||| |||||||| | | |||||||| ||||||||| ATGATGTAGT TTCCATCTCC ATGGTATCTT TTCAACATGG ATACATGAAA TACCGGATGT 499 ACTCCTGACA GTCCTGGGGG CAAGGCTAAT TCATAAGCTA CCTCCCCCAC GCGCTTCAGA 29681 ||||| |||| | ||||| || ||||||||| |||||||| | ||||||| || ||||| || ACTCCGGACA GCCCTGGAGG TAAGGCTAAT TCATAAGCCA CCTCCCCTAC TCGCTTTAGT 559 ACTTCAAATG GACCAATATA CCTCGGACTA AGCTTACCTC GCTTACCAAA CCACATCACC 29741 || ||||||| | |||||||| ||| ||||| | |||||||| |||| ||| || ||||||| ACCTCAAATG GTCCAATATA CCTTGGACTT AACTTACCTC TTTTACGAAA CCGCATCACC 619 CCTTTCATGG GCGAAACCTT CAGCAAGACT TGCTCACCCT CCATAAATGC CAAGTCTCTA 29801 |||||||| | |||| || || || ||||||| || || |||| |||| || | ||||||||| CCTTTCATTG GCGAGACTTT CAACAAGACT TGTTCGCCCT CCATGAACTC TAAGTCTCTA 679 ACCTTTCAAT CTGCGTATTC TTTCTGCCTA CTTTGAGCCG CTAAAAGCTT TTCTTGAATG 29861 ||||||| || |||| ||||| ||| || ||| ||||| |||| ||| |||||| ||||||||| ACCTTTCGAT CTGCATATTC TTTTTGTCTA CTTTGCGCCG CTAGAAGCTT TTCTTGAATA 739 CATTTCACTT TATCTAACGA TTC 29884 | ||||||| | || | ||| || GACTTCACTT TCTCCATCGA ATC 762 hqPGS_C08HBa0027D09.1+_SGN-E354383- (29203 29884) ******************************************************************************** EST sequence 75 +strand 542 n (File: SGN-E353207+) 1 TCGGCATGTA CTGTTTTCCA AAACTTAGAA GTAAATTGCG TACCTCTATC TGATATGATG 61 GAGAGTGGAA CTCCGTGCAA TCGAACAATT TCTAAGATGT AAAGTTTGGC TAACTTCTCT 121 GCATTGTAAG TCACCTTAAC CGAAATAGAG TGAGCAGACT TAGTTAATCT GTCAACAATC 181 ACCCAAATAG AGTCATACCT ACCCATCGTC TTTGGATGAC TAACCACGAA GTCCATTGCA 241 ATTCTCTCCC ACTTCCATTC AGGAATGGGC ATTCTCTGAA GTGTCCCTCC AGGCCTCTGG 301 TGTTCATACT TTACTTGCTG ACAATTCGGG CATTGAGCAA CAAAATTAAC AATGTCACGC 361 TTCATCCTAC TCCACCAAAA ATGTTGCTTT AGGTCACGAT ACATCTTGTT TGCACCAGGA 421 TGTATAGAGT ACTTCGAACT ATGAGCCTAT ATAAGAATAG TGTGAATCAA ATCATCGACG 481 CGGGGTACAC ATACTCCTTC CCTTATTCTC AAAACACCTT CCTCATCGAT TTTTGCTTCT 541 TT Predicted gene structure (within gDNA segment 29468 to 32344): Exon 1 30167 30708 ( 542 n); cDNA 1 542 ( 542 n); score: 0.911 MATCH C08HBa0027D09.1+ SGN-E353207+ 0.911 542 1.000 C PGS_C08HBa0027D09.1+_SGN-E353207+ (30167 30708) Alignment (genomic DNA sequence = upper lines): TCAGCATGCA ATGTTTTCCA AAACTTAGAA GTAAACTGCG TTCCTCTATC TGATATGATG 30226 || ||||| | ||||||||| |||||||||| ||||| |||| | |||||||| |||||||||| TCGGCATGTA CTGTTTTCCA AAACTTAGAA GTAAATTGCG TACCTCTATC TGATATGATG 60 GAAAGTGGAA CTCCATGCAA TTGAACAATT TCTGAGACGT AAAGTTTGGC TAACTTCTCT 30286 || ||||||| |||| ||||| | |||||||| ||| ||| || |||||||||| |||||||||| GAGAGTGGAA CTCCGTGCAA TCGAACAATT TCTAAGATGT AAAGTTTGGC TAACTTCTCT 120 GCATTGTAAG TCACCTTAAC CGGAATGAAG TGAGTAGACT TAGTTAACCT ATCAACAATT 30346 |||||||||| |||||||||| || ||| || |||| ||||| ||||||| || |||||||| GCATTGTAAG TCACCTTAAC CGAAATAGAG TGAGCAGACT TAGTTAATCT GTCAACAATC 180 ACCCAAATGG AGTCATACTT ACCCATTGTC TTTGGAAGAC CAACCACGAA GTCCATTGCA 30406 |||||||| | |||||||| | |||||| ||| |||||| ||| ||||||||| |||||||||| ACCCAAATAG AGTCATACCT ACCCATCGTC TTTGGATGAC TAACCACGAA GTCCATTGCA 240 ATTCTCTCCC ACTTCCATTA AGGAATGGGC ATTCTCTGAA GTGTCCCTCC AGGCCTCTGG 30466 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCTCCC ACTTCCATTC AGGAATGGGC ATTCTCTGAA GTGTCCCTCC AGGCCTCTGG 300 TGTTCATACT TTACCTGCTG ACAATTCGGG CATTGAGCAA CAAAATCAAC AATGTCGCCC 30526 |||||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| |||||| | | TGTTCATACT TTACTTGCTG ACAATTCGGG CATTGAGCAA CAAAATTAAC AATGTCACGC 360 TTCATCCTAC TCCACCAGAA ATGTTGCTTT AGGTCGCGAT ACATCTTGGT TGCACCAGGA 30586 |||||||||| ||||||| || |||||||||| ||||| |||| |||||||| | |||||||||| TTCATCCTAC TCCACCAAAA ATGTTGCTTT AGGTCACGAT ACATCTTGTT TGCACCAGGA 420 TGTATAGAAT ACCTTGAACT ATGAGCCTCC GTAAGAATAG TGTGAATCAA ATAATCTATA 30646 |||||||| | || | ||||| |||||||| ||||||||| |||||||||| || ||| | TGTATAGAGT ACTTCGAACT ATGAGCCTAT ATAAGAATAG TGTGAATCAA ATCATCGACG 480 CGGGGCATAC ATAC-CCTTC CCTTAATTCT CAAAATGCCT ACCTCATCGA TTTTTGCTTC 30705 ||||| | || |||| ||||| |||| ||||| ||||| ||| ||||||||| |||||||||| CGGGGTACAC ATACTCCTTC CCTT-ATTCT CAAAACACCT TCCTCATCGA TTTTTGCTTC 539 TTT 30708 ||| TTT 542 hqPGS_C08HBa0027D09.1+_SGN-E353207+ (30167 30708) ******************************************************************************** EST sequence 14 +strand 654 n (File: SGN-E578131+) 1 GTAAACTGCA TACCTCTATC TGATATGATG GAGAGTGGAA CTCCATGCAA TCGAACGATT 61 TCTGAGATAT AGATTCTGAC TAACTTCTCT ACATTGTAGG TCACCTTGAC CGGAATGCAA 121 TGAGCAGACT TAGTCAATCT GTCAACAATT ACACAAATGG AGTCATACTT ACCCATTGTC 181 TTTGGAAGGC CAACCACGAA GTCCATTGCA ATTCTCTCCC ACTTCCATTC AGGAATGGGC 241 ATTCTCTGAA GTGTCCGTCC AGGCCTTTGC TGTTCATACT TTACATGCTG ACCATTCGGT 301 TAGAAATGCT AATGGACGCT ACTTTCCCAC TAGTTCAAAA TTTGTGAAGC CACGGGCTTG 361 CTTGAAGATT GGTCTTGGTC TCTTAACAAA ACAGATCCGC TGATATGTTT CTAATTATGC 421 AGAGGATTTT GCAAGAAAGA GTTGTTAGTA GCCGGGAAGC TGAACTCAAT AGATTGAAGC 481 AGGAGAGACG AGAAAGGATC AGCCAGATAA TTCAATCAAG GAAGCAGGAG AGGGAAGCTA 541 AGAGGAAAAT GTTATTCTTT CTGCGAACTG AGGAGGAGCG TCAAAAGAGG TTACTGGAAG 601 AGGAGGAAGC CCGCAAACGT GAAGGTTCTC CTGTGGGAAG CCGGACTTGC TAAG Predicted gene structure (within gDNA segment 29489 to 35042): Exon 1 30197 30495 ( 299 n); cDNA 1 299 ( 299 n); score: 0.906 MATCH C08HBa0027D09.1+ SGN-E578131+ 0.906 299 0.457 C PGS_C08HBa0027D09.1+_SGN-E578131+ (30197 30495) Alignment (genomic DNA sequence = upper lines): GTAAACTGCG TTCCTCTATC TGATATGATG GAAAGTGGAA CTCCATGCAA TTGAACAATT 30256 ||||||||| | |||||||| |||||||||| || ||||||| |||||||||| | |||| ||| GTAAACTGCA TACCTCTATC TGATATGATG GAGAGTGGAA CTCCATGCAA TCGAACGATT 60 TCTGAGACGT AAAGTTTGGC TAACTTCTCT GCATTGTAAG TCACCTTAAC CGGAATGAAG 30316 ||||||| | | | | || | |||||||||| ||||||| | ||||||| || ||||||| | TCTGAGATAT AGATTCTGAC TAACTTCTCT ACATTGTAGG TCACCTTGAC CGGAATGCAA 120 TGAGTAGACT TAGTTAACCT ATCAACAATT ACCCAAATGG AGTCATACTT ACCCATTGTC 30376 |||| ||||| |||| || || ||||||||| || ||||||| |||||||||| |||||||||| TGAGCAGACT TAGTCAATCT GTCAACAATT ACACAAATGG AGTCATACTT ACCCATTGTC 180 TTTGGAAGAC CAACCACGAA GTCCATTGCA ATTCTCTCCC ACTTCCATTA AGGAATGGGC 30436 |||||||| | |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTTGGAAGGC CAACCACGAA GTCCATTGCA ATTCTCTCCC ACTTCCATTC AGGAATGGGC 240 ATTCTCTGAA GTGTCCCTCC AGGCCTCTGG TGTTCATACT TTACCTGCTG ACAATTCGG 30495 |||||||||| |||||| ||| |||||| || |||||||||| |||| ||||| || |||||| ATTCTCTGAA GTGTCCGTCC AGGCCTTTGC TGTTCATACT TTACATGCTG ACCATTCGG 299 hqPGS_C08HBa0027D09.1+_SGN-E578131+ (30197 30495) ******************************************************************************** EST sequence 77 +strand 587 n (File: SGN-E352950+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC Predicted gene structure (within gDNA segment 27816 to 32627): Exon 1 30612 31198 ( 587 n); cDNA 1 587 ( 587 n); score: 0.893 MATCH C08HBa0027D09.1+ SGN-E352950+ 0.893 587 1.000 C PGS_C08HBa0027D09.1+_SGN-E352950+ (30612 31198) Alignment (genomic DNA sequence = upper lines): CCTCCGTAAG AATAGTGTGA ATCAAATAAT CTATACGGGG CATACATACC CTTCCCTTAA 30671 |||| ||||| |||||||||| ||||||| | | |||||| | ||||||| ||||||||| CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAT GCCTACCTCA TCGATTTTTG CTTCTTTAGC CTCTCCACGT TATGCCTTAT 30731 | ||||||| ||| ||| | |||||||||| |||||||||| |||||| || | |||||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CTCGAATCCG AATCAGCTTC TCATCATTAA ACTGCTTTTC CTTAATCTTG TTAAGAAAGG 30791 ||||||||| ||||| ||| ||||| ||| |||||||| | |||||||| | |||||||| CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAGATCTTGC CTCCAAACAA GCCAAAAATC CTCCCTTCTC ATCTACTTCT AGCCTCATAA 30851 |||||||||| ||||| |||| ||||||||| |||||||||| || || |||| |||||||||| AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 AGTTATTAGC CAGAGTCTGA ACTTCTCTAG CCAATGGGCG TCTAGAAACC TGCAAGTGAG 30911 || |||||| |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT ACCTTTCTAC TTAAAGCATC TGCCACAGCG CTAGCTTTTC 30971 |||||||||| |||||||||| ||||||||| |||||||||| ||||||| | |||| |||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CTGGGTGGTA CAAAATAGTG ATATCGTAGT CCTTCAGTAG TTCCATCCAT CTCATCTGTC 31031 | || || || ||| |||||| ||||| |||| |||||||||| |||||| || ||| |||||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 420 TCAAATTCAA ATCTTTCTGA TTAAAGACAT ACTGTAAACT ACGATGATCC GTATAGACTT 31091 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 480 CACACTTAAC CCCATATAGA TAATGTCTCC ATTGCTTTAA TGAAAATACT ACCACAGCCA 31151 |||||||||| |||||| ||| ||||||||| ||| |||||| || || ||| || | || | CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 540 ACTCCAAATC ATCGGTCGGA TAATTACGTT CGTGCACCTT TAATTGC 31198 |||||||||| || ||||||| |||||||||| | |||||||| ||||||| ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC 587 hqPGS_C08HBa0027D09.1+_SGN-E352950+ (30612 31198) ******************************************************************************** EST sequence 128 +strand 587 n (File: SGN-E357100+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC Predicted gene structure (within gDNA segment 27816 to 32627): Exon 1 30612 31198 ( 587 n); cDNA 1 587 ( 587 n); score: 0.893 MATCH C08HBa0027D09.1+ SGN-E357100+ 0.893 587 1.000 C PGS_C08HBa0027D09.1+_SGN-E357100+ (30612 31198) Alignment (genomic DNA sequence = upper lines): CCTCCGTAAG AATAGTGTGA ATCAAATAAT CTATACGGGG CATACATACC CTTCCCTTAA 30671 |||| ||||| |||||||||| ||||||| | | |||||| | ||||||| ||||||||| CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAT GCCTACCTCA TCGATTTTTG CTTCTTTAGC CTCTCCACGT TATGCCTTAT 30731 | ||||||| ||| ||| | |||||||||| |||||||||| |||||| || | |||||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CTCGAATCCG AATCAGCTTC TCATCATTAA ACTGCTTTTC CTTAATCTTG TTAAGAAAGG 30791 ||||||||| ||||| ||| ||||| ||| |||||||| | |||||||| | |||||||| CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAGATCTTGC CTCCAAACAA GCCAAAAATC CTCCCTTCTC ATCTACTTCT AGCCTCATAA 30851 |||||||||| ||||| |||| ||||||||| |||||||||| || || |||| |||||||||| AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 AGTTATTAGC CAGAGTCTGA ACTTCTCTAG CCAATGGGCG TCTAGAAACC TGCAAGTGAG 30911 || |||||| |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT ACCTTTCTAC TTAAAGCATC TGCCACAGCG CTAGCTTTTC 30971 |||||||||| |||||||||| ||||||||| |||||||||| ||||||| | |||| |||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CTGGGTGGTA CAAAATAGTG ATATCGTAGT CCTTCAGTAG TTCCATCCAT CTCATCTGTC 31031 | || || || ||| |||||| ||||| |||| |||||||||| |||||| || ||| |||||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 420 TCAAATTCAA ATCTTTCTGA TTAAAGACAT ACTGTAAACT ACGATGATCC GTATAGACTT 31091 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 480 CACACTTAAC CCCATATAGA TAATGTCTCC ATTGCTTTAA TGAAAATACT ACCACAGCCA 31151 |||||||||| |||||| ||| ||||||||| ||| |||||| || || ||| || | || | CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 540 ACTCCAAATC ATCGGTCGGA TAATTACGTT CGTGCACCTT TAATTGC 31198 |||||||||| || ||||||| |||||||||| | |||||||| ||||||| ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC 587 hqPGS_C08HBa0027D09.1+_SGN-E357100+ (30612 31198) ******************************************************************************** EST sequence 54 +strand 554 n (File: SGN-E352647+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAA CCCATAGAGA TAATGGCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGG Predicted gene structure (within gDNA segment 27816 to 32360): Exon 1 30612 31163 ( 552 n); cDNA 1 552 ( 552 n); score: 0.886 MATCH C08HBa0027D09.1+ SGN-E352647+ 0.886 552 0.996 C PGS_C08HBa0027D09.1+_SGN-E352647+ (30612 31163) Alignment (genomic DNA sequence = upper lines): CCTCCGTAAG AATAGTGTGA ATCAAATAAT CTATACGGGG CATACATACC CTTCCCTTAA 30671 |||| ||||| |||||||||| ||||||| | | |||||| | ||||||| ||||||||| CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAT GCCTACCTCA TCGATTTTTG CTTCTTTAGC CTCTCCACGT TATGCCTTAT 30731 | ||||||| ||| ||| | |||||||||| |||||||||| |||||| || | |||||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CTCGAATCCG AATCAGCTTC TCATCATTAA ACTGCTTTTC CTTAATCTTG TTAAGAAAGG 30791 ||||||||| ||||| ||| ||||| ||| |||||||| | |||||||| | |||||||| CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAGATCTTGC CTCCAAACAA GCCAAAAATC CTCCCTTCTC ATCTACTTCT AGCCTCATAA 30851 |||||||||| ||||| |||| ||||||||| |||||||||| || || |||| |||||||||| AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 AGTTATTAGC CAGAGTCTGA ACTTCTCTAG CCAATGGGCG TCTAGAAACC TGCAAGTGAG 30911 || |||||| |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT ACCTTTCTAC TTAAAGCATC TGCCACAGCG CTAGCTTTTC 30971 |||||||||| |||||||||| ||||||||| |||||||||| ||||||| | |||| |||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CTGGGTGGTA CAAAATAGTG ATATCGTAGT CCTTCAGTAG TTCCATCCAT CTCATCTGTC 31031 | || || || ||| |||||| ||||| |||| |||||||||| |||||| || ||| |||||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 420 TCAAATTCAA ATCTTTCTGA TTAAAGACAT ACTGTAAACT ACGATGATCC GTATAGACTT 31091 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 480 CACACTTAAC CCCATATAGA TAATGTCTCC ATTGCTTTAA TGAAAATACT ACCACAGCCA 31151 ||||||||| |||||| ||| ||||| ||| ||| |||||| || || ||| || | || | CACACTTAAA CCCATAGAGA TAATGGCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 540 ACTCCAAATC AT 31163 |||||||||| || ACTCCAAATC AT 552 hqPGS_C08HBa0027D09.1+_SGN-E352647+ (30612 31163) ******************************************************************************** EST sequence 87 +strand 694 n (File: SGN-E353359+) 1 TGTAGTCTAT GCACATTCAA AAACTGCCGA TCTTTACAAC AAAACCGGAG CACCCCAAGG 61 AGATGCACTT GGTCTAATGA AGCCTTTGTT CAATAACTCT TGAAGTTGTG CCTTTAACTC 121 TCTTAACTCT GCGGGAGCCA TTCTATAAGG GGGTATAAAA ATGGGGCGTG TGCCCGGTTC 181 GAGATCAATA CAGAAGTCAA TATCCCTATC CGGTGGCATA CCAGGATGAT CTGCAGGGAA 241 CACATCCATA AACTCACGAA CTACTGAAAC TGAGTCAATC GAAGGTACTT GGGTAGTGTT 301 ATCCTTGAGA TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG 361 AAAGGAGATG ATACGCACCG GATTGGAAGT GTAGTCACCC TCCTACACTA ACAGATCTGT 421 CCCAGGCTTG GCTAACGTCA CGGTTTTAGC ATTACAATCC AAGATTGCAA AATTTGGAGA 481 AAGCCAAGTC ATACCCAGAA TTACATCGAA GTCAACCATT TCTTGCAAGG ATTTTGCCGT 541 AGCCGCTACC TGTAACGCTG AAATCCGCAA CTCTGACCTC AACCCTTTCA CAAAACGACG 601 AATCCTCTCT TGTGGACTGA AACAAAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 661 AGCCTCATAT GCATTGACCT ACATCCTACC TTGC Predicted gene structure (within gDNA segment 28884 to 34846): Exon 1 31998 32526 ( 529 n); cDNA 1 523 ( 523 n); score: 0.884 Intron 1 32527 33306 ( 780 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.88) Exon 2 33307 33477 ( 171 n); cDNA 524 694 ( 171 n); score: 0.883 MATCH C08HBa0027D09.1+ SGN-E353359+ 0.884 700 1.009 C PGS_C08HBa0027D09.1+_SGN-E353359+ (31998 32526,33307 33477) Alignment (genomic DNA sequence = upper lines): TGTAGTCTAT GCACATCCTA AAACTTCCAT CCTTCTTCTT CACAAACAAA ACGGGAGCAC 32057 |||||||||| |||||| | | |||| | | | ||| || || |||||| || ||||||| TGTAGTCTAT GCACATTCAA AAAC-TGC-- CGATCT--TT -AC-AACAAA ACCGGAGCAC 53 CCCTTAGGGA TGCACTTGGT CTAATAAAGC CTTTTCCTAA CAATTCTTGA AGTTG-GCCT 32116 ||| | || |||||||||| ||||| |||| |||| || || |||||| ||||| |||| CCCAAGGAGA TGCACTTGGT CTAATGAAGC CTTTGTTCAA TAACTCTTGA AGTTGTGCCT 113 TTACCTCTCT TAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG AGGCAAGTAC 32176 ||| |||||| |||||| ||| |||||||||| |||||||||| ||| ||||| ||| || | TTAACTCTCT TAACTCTGCG GGAGCCATTC TATAAGGGGG TATAAAAATG GGGCGTGTGC 173 CCGGCTCCAG ATCAATGCAA AAGTCAATAT ACCTATCCGG TGGCATACCA GGAAGGTCTG 32236 |||| || || |||||| || |||||||||| ||||||||| |||||||||| ||| | |||| CCGGTTCGAG ATCAATACAG AAGTCAATAT CCCTATCCGG TGGCATACCA GGATGATCTG 233 GAGGAAACAC ATCCAAAAAC TCACGGACTA TCGAAACCGA CTCAATTGAA GGTACTTGGG 32296 ||| ||||| ||||| |||| ||||| |||| ||||| || ||||| ||| |||||||||| CAGGGAACAC ATCCATAAAC TCACGAACTA CTGAAACTGA GTCAATCGAA GGTACTTGGG 293 TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 32356 |||| | ||| | |||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| TAGTGTTATC CTTGAGATGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTTTCTTAG 353 CACGAAGAAA GGAGACGATA CGAACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG 32416 |||||||||| ||||| |||| || ||||||| |||||||||| |||||||||| |||||||| CACGAAGAAA GGAGATGATA CGCACCGGAT TGGAAGTGTA GTCACCCTCC TACACTAACA 413 GATCTGTCCT AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 32476 ||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GATCTGTCCC AGGCTTGGCT AACGTCACGG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 473 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT AGGATAACCA 32536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT .......... 523 AGTCTACATG AGTATTGCTC CCCACAAAAG TCAAAAGACA AGACCTATAC ACCTTTTCAA 32596 .......... .......... .......... .......... .......... .......... 523 CTATCAAAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGA AAATCACAAT 32656 .......... .......... .......... .......... .......... .......... 523 GTAAATCAAG ACCAGTAGGA AATGAGGAAG ATACATAAGA AAATGTGGAT CCAGGATCAA 32716 .......... .......... .......... .......... .......... .......... 523 ATAATACAGA AGCGATGTAA TCACAAACCA AAAGATTACC TGTGATAACA GCATCAGATG 32776 .......... .......... .......... .......... .......... .......... 523 TCTCCGCTTC AGACCTCCCA GGGAAAGCAT AACAATGGGC CCTATCACCT GTCTGCCCGT 32836 .......... .......... .......... .......... .......... .......... 523 TGCCCCTACC ATGTTGCGCT GCAGTGGTTC CAGTTTGCCT GCCACCCTGA TTGATTTGGT 32896 .......... .......... .......... .......... .......... .......... 523 GACCACCATT ACCTCGGCCA CCACGTTCTC CAGAATAGCG GCCTCTCCCA TGACCACCTC 32956 .......... .......... .......... .......... .......... .......... 523 TACCTCTGAC TATTGGGGGT CTGTAACTCT GTTTTGGACA ACATCTCTTA ATATGTCCAA 33016 .......... .......... .......... .......... .......... .......... 523 TTTCCCCACA TCCATAACAC TCTCTGGGTT CAAGCATAGG TCTCTGTGAG AACGACAGAG 33076 .......... .......... .......... .......... .......... .......... 523 TCTGGGGATA ACCTCCAAAC TCAGAGAAAT GTTGACCGGT CTGGGGTGGA CCCCCAGCTA 33136 .......... .......... .......... .......... .......... .......... 523 CAGCCTGTAG TGAAGACTGA ATTGATCGGG CTGGGTAACC TCCTGAACCC TGTCCTCTGG 33196 .......... .......... .......... .......... .......... .......... 523 AGTAAGAACC ATTAAACTCA CCTCCCTTAC GAAACTTTTT AAAGGTCAAT GCCATGGTGA 33256 .......... .......... .......... .......... .......... .......... 523 AGTCTTCTGG ATTCACTCCC TCCACTTCTA TCACAATATC TACCACTTCC TGAAAGGATT 33316 || ||||||| .......... .......... .......... .......... .......... TGCAAGGATT 533 TTGCTGTAGC AGCTACCTGT AAGGCTGAAA TCCGCAAATT TGACCTCAAC CCCTTCACAA 33376 |||| ||||| ||||||||| || ||||||| ||||||| | |||||||||| || ||||||| TTGCCGTAGC CGCTACCTGT AACGCTGAAA TCCGCAACTC TGACCTCAAC CCTTTCACAA 593 AATGGCGAAT CCGCTCTTGT GGACTGAAGC AAAGCTGGGT GGCATATCTG GATAGTGCAC 33436 || | ||||| || ||||||| |||||||| | |||| || || |||||||||| |||||||||| AACGACGAAT CCTCTCTTGT GGACTGAAAC AAAGTTGAGT GGCATATCTG GATAGTGCAC 653 GAAACCTAGC CTCATAAGCA GTAACTGACA TCCTGCCTTG C 33477 ||||| |||| |||||| ||| | || ||| |||| ||||| | GAAACTTAGC CTCATATGCA TTGACCTACA TCCTACCTTG C 694 hqPGS_C08HBa0027D09.1+_SGN-E353359+ (31998 32526,33307 33477) ******************************************************************************** EST sequence 23 +strand 712 n (File: SGN-E379315+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 541 CTTGTTCTTT ATGGTTACCT TGTTNCACTG CCGGTAGCCT ATGCACATCC GAAAACTCCA 601 ATCCTTCTTC TTTACAAACA AAACCGGAGC ACCCCAAGGA GATGCAGTTG GTCTAATGAA 661 GCCTTTGCTC ACAACTCTTT GAAGTGGTCT TTTAACTCTC TTAACTCTGC GG Predicted gene structure (within gDNA segment 30493 to 34286): Exon 1 31427 32137 ( 711 n); cDNA 2 712 ( 711 n); score: 0.852 MATCH C08HBa0027D09.1+ SGN-E379315+ 0.852 711 0.999 C PGS_C08HBa0027D09.1+_SGN-E379315+ (31427 32137) Alignment (genomic DNA sequence = upper lines): AATCCCTTGA CAAATCGACG GTAGTAGATA GCTAAACCAA CAAAGCTCCT TACCTCTGTA 31486 |||||||||| ||||||| || ||||||| || ||||| |||| |||||||||| || |||| AATCCCTTGA CAAATCGGCG GTAGTAGCTA GCTAACCCAA CAAAGCTCCT TATTTCTGAC 61 ACATTAGTAG GTCTTACCCA ACTCTTCACT GCTTCGATCT TAGTAGGATC CACCATCACT 31546 |||||||||| |||||||||| | |||||||| | || |||| ||| |||||| |||||||||| ACATTAGTAG GTCTTACCCA ATTCTTCACT GTCTCAATCT TAGAAGGATC CACCATCACT 121 CCATCCTTAG AAACCACATG CCCCAAGAAG GACACTGAAT CTAGCCAAAA CTCACACTTG 31606 |||||||||| ||||||| | |||||||||| |||||| || |||||||||| ||||||||| CCATCCTTAG AAACCACGTT CCCCAAGAAG GACACTACAT CTAGCCAAAA CTCACACTTA 181 GAGAATTTGG CATAGAGCTT TTTCTCCCTC AACATTTCCA ATACAATCCT CAAGTGCTCC 31666 ||||| |||| |||| | ||| |||||||||| |||||||||| |||| || || ||| ||||| GAGAACTTGG CATAAAACTT TTTCTCCCTC AACATTTCCA ATACCATTCT CAAATGCTCT 241 TCATGTTCTT TCCTGCTCTT TGAGTATACC AATATATCAT CTATGAATAC AATGACAAAG 31726 |||||||| | | | || || ||||||| | | |||||||| | || ||||| || |||||| TCATGTTCCT CCTTACTTTT AGAGTATATC AGTATATCAT CAATAAATAC GATCACAAAG 301 AGATCTAGAT AGGGCTTAAA AATCCCATTC ATCAAGCTCA TGAAAGCAGC GGGGGCATTC 31786 ||||| | || | |||||||| |||||| || || || |||| | || ||||| ||||||||| AGATCCAAAT ATGGCTTAAA AATCCCTTTT ATTAAACTCA TAAACGCAGC AGGGGCATTC 361 GTAAGCCCAA AAGACATTAC TAAGAACTCA TAATGTCCAT ATCTGGTTCG AAAAGCAGTC 31846 |||| |||| ||||||| || || || | ||||| |||| | ||||||| |||||||||| ATAAGACCAA AAGACATCAC TACAAATTTG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC 421 TTGGGCACAT CCGTTGCCCA TATTTTCAAT TGATGATAAC CAGATCTCAA ATTGTTTTTT 31906 || ||||||| ||||||||| |||||||||| |||||||||| | |||||||| | | || TTTGGCACAT CCGTTGCCCG TATTTTCAAT TGATGATAAC CGGATCTCAA GTCAATCTTA 481 GAGAAGGTAC AAGCACCTTG TAACTTATCG AACAAATCAT CGATGCGAGG AAGAGGATAC 31966 || ||| || |||||||||| ||||| |||| ||||| |||| |||||||| |||||||||| GAAAAGACAC AAGCACCTTG TAACTGATCG AACAAGTCAT TAATGCGAGG AAGAGGATAC 541 CTGTTCTTAA TAGTTACCTT ATTCAGTTGC CTGTAGTCTA TGCACATCCT AAAACTTCCA 32026 ||||||| | | |||||||| || ||| | |||| ||| ||||||||| |||||| | | TTGTTCTTTA TGGTTACCTT GTTNCACTGC CGGTAGCCTA TGCACATCCG AAAACTCCAA 601 TCCTTCTTCT TCACAAACAA AACGGGAGCA CCCCTTAGGG ATGCACTTGG TCTAATAAAG 32086 |||||||||| | |||||||| ||| |||||| |||| | | ||||| |||| |||||| ||| TCCTTCTTCT TTACAAACAA AACCGGAGCA CCCCAAGGAG ATGCAGTTGG TCTAATGAAG 661 CCTTTTCCTA ACAATTC-TT GAAGTTGGCC TTTACCTCTC TTAACTCAGC GG 32137 || ||| || |||| || || ||||| | | |||| ||||| ||||||| || || CC-TTTGCTC ACAACTCTTT GAAGTGGTCT TTTAACTCTC TTAACTCTGC GG 712 hqPGS_C08HBa0027D09.1+_SGN-E379315+ (31427 32137) ******************************************************************************** EST sequence 44 +strand 596 n (File: SGN-E375319+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 541 CTTGTTCTTT ATGGTTACCT TGTTCAACTG CCGGTAGCCT ATGCACATCC GAAAAC Predicted gene structure (within gDNA segment 30493 to 33126): Exon 1 31427 32021 ( 595 n); cDNA 2 596 ( 595 n); score: 0.862 MATCH C08HBa0027D09.1+ SGN-E375319+ 0.862 595 0.998 C PGS_C08HBa0027D09.1+_SGN-E375319+ (31427 32021) Alignment (genomic DNA sequence = upper lines): AATCCCTTGA CAAATCGACG GTAGTAGATA GCTAAACCAA CAAAGCTCCT TACCTCTGTA 31486 |||||||||| ||||||| || ||||||| || ||||| |||| |||||||||| || |||| AATCCCTTGA CAAATCGGCG GTAGTAGCTA GCTAACCCAA CAAAGCTCCT TATTTCTGAC 61 ACATTAGTAG GTCTTACCCA ACTCTTCACT GCTTCGATCT TAGTAGGATC CACCATCACT 31546 |||||||||| |||||||||| | |||||||| | || |||| ||| |||||| |||||||||| ACATTAGTAG GTCTTACCCA ATTCTTCACT GTCTCAATCT TAGAAGGATC CACCATCACT 121 CCATCCTTAG AAACCACATG CCCCAAGAAG GACACTGAAT CTAGCCAAAA CTCACACTTG 31606 |||||||||| ||||||| | |||||||||| |||||| || |||||||||| ||||||||| CCATCCTTAG AAACCACGTT CCCCAAGAAG GACACTACAT CTAGCCAAAA CTCACACTTA 181 GAGAATTTGG CATAGAGCTT TTTCTCCCTC AACATTTCCA ATACAATCCT CAAGTGCTCC 31666 ||||| |||| |||| | ||| |||||||||| |||||||||| |||| || || ||| ||||| GAGAACTTGG CATAAAACTT TTTCTCCCTC AACATTTCCA ATACCATTCT CAAATGCTCT 241 TCATGTTCTT TCCTGCTCTT TGAGTATACC AATATATCAT CTATGAATAC AATGACAAAG 31726 |||||||| | | | || || ||||||| | | |||||||| | || ||||| || |||||| TCATGTTCCT CCTTACTTTT AGAGTATATC AGTATATCAT CAATAAATAC GATCACAAAG 301 AGATCTAGAT AGGGCTTAAA AATCCCATTC ATCAAGCTCA TGAAAGCAGC GGGGGCATTC 31786 ||||| | || | |||||||| |||||| || || || |||| | || ||||| ||||||||| AGATCCAAAT ATGGCTTAAA AATCCCTTTT ATTAAACTCA TAAACGCAGC AGGGGCATTC 361 GTAAGCCCAA AAGACATTAC TAAGAACTCA TAATGTCCAT ATCTGGTTCG AAAAGCAGTC 31846 |||| |||| ||||||| || || || | ||||| |||| | ||||||| |||||||||| ATAAGACCAA AAGACATCAC TACAAATTTG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC 421 TTGGGCACAT CCGTTGCCCA TATTTTCAAT TGATGATAAC CAGATCTCAA ATTGTTTTTT 31906 || ||||||| ||||||||| |||||||||| |||||||||| | |||||||| | | || TTTGGCACAT CCGTTGCCCG TATTTTCAAT TGATGATAAC CGGATCTCAA GTCAATCTTA 481 GAGAAGGTAC AAGCACCTTG TAACTTATCG AACAAATCAT CGATGCGAGG AAGAGGATAC 31966 || ||| || |||||||||| ||||| |||| ||||| |||| |||||||| |||||||||| GAAAAGACAC AAGCACCTTG TAACTGATCG AACAAGTCAT TAATGCGAGG AAGAGGATAC 541 CTGTTCTTAA TAGTTACCTT ATTCAGTTGC CTGTAGTCTA TGCACATCCT AAAAC 32021 ||||||| | | |||||||| |||| ||| | |||| ||| ||||||||| ||||| TTGTTCTTTA TGGTTACCTT GTTCAACTGC CGGTAGCCTA TGCACATCCG AAAAC 596 hqPGS_C08HBa0027D09.1+_SGN-E375319+ (31427 32021) ******************************************************************************** EST sequence 30 +strand 526 n (File: SGN-E204434+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATG Predicted gene structure (within gDNA segment 30493 to 33137): Exon 1 31427 31951 ( 525 n); cDNA 2 526 ( 525 n); score: 0.861 MATCH C08HBa0027D09.1+ SGN-E204434+ 0.861 525 0.998 C PGS_C08HBa0027D09.1+_SGN-E204434+ (31427 31951) Alignment (genomic DNA sequence = upper lines): AATCCCTTGA CAAATCGACG GTAGTAGATA GCTAAACCAA CAAAGCTCCT TACCTCTGTA 31486 |||||||||| ||||||| || ||||||| || ||||| |||| |||||||||| || |||| AATCCCTTGA CAAATCGGCG GTAGTAGCTA GCTAACCCAA CAAAGCTCCT TATTTCTGAC 61 ACATTAGTAG GTCTTACCCA ACTCTTCACT GCTTCGATCT TAGTAGGATC CACCATCACT 31546 |||||||||| |||||||||| | |||||||| | || |||| ||| |||||| |||||||||| ACATTAGTAG GTCTTACCCA ATTCTTCACT GTCTCAATCT TAGAAGGATC CACCATCACT 121 CCATCCTTAG AAACCACATG CCCCAAGAAG GACACTGAAT CTAGCCAAAA CTCACACTTG 31606 |||||||||| ||||||| | |||||||||| |||||| || |||||||||| ||||||||| CCATCCTTAG AAACCACGTT CCCCAAGAAG GACACTACAT CTAGCCAAAA CTCACACTTA 181 GAGAATTTGG CATAGAGCTT TTTCTCCCTC AACATTTCCA ATACAATCCT CAAGTGCTCC 31666 ||||| |||| |||| | ||| |||||||||| |||||||||| |||| || || ||| ||||| GAGAACTTGG CATAAAACTT TTTCTCCCTC AACATTTCCA ATACCATTCT CAAATGCTCT 241 TCATGTTCTT TCCTGCTCTT TGAGTATACC AATATATCAT CTATGAATAC AATGACAAAG 31726 |||||||| | | | || || ||||||| | | |||||||| | || ||||| || |||||| TCATGTTCCT CCTTACTTTT AGAGTATATC AGTATATCAT CAATAAATAC GATCACAAAG 301 AGATCTAGAT AGGGCTTAAA AATCCCATTC ATCAAGCTCA TGAAAGCAGC GGGGGCATTC 31786 ||||| | || | |||||||| |||||| || || || |||| | || ||||| ||||||||| AGATCCAAAT ATGGCTTAAA AATCCCTTTT ATTAAACTCA TAAACGCAGC AGGGGCATTC 361 GTAAGCCCAA AAGACATTAC TAAGAACTCA TAATGTCCAT ATCTGGTTCG AAAAGCAGTC 31846 |||| |||| ||||||| || || || | ||||| |||| | ||||||| |||||||||| ATAAGACCAA AAGACATCAC TACAAATTTG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC 421 TTGGGCACAT CCGTTGCCCA TATTTTCAAT TGATGATAAC CAGATCTCAA ATTGTTTTTT 31906 || ||||||| ||||||||| |||||||||| |||||||||| | |||||||| | | || TTTGGCACAT CCGTTGCCCG TATTTTCAAT TGATGATAAC CGGATCTCAA GTCAATCTTA 481 GAGAAGGTAC AAGCACCTTG TAACTTATCG AACAAATCAT CGATG 31951 || ||| || |||||||||| ||||| |||| ||||| |||| ||| GAAAAGACAC AAGCACCTTG TAACTGATCG AACAAGTCAT TAATG 526 hqPGS_C08HBa0027D09.1+_SGN-E204434+ (31427 31951) ******************************************************************************** EST sequence 111 +strand 679 n (File: SGN-E368762+) 1 GTCTCACCCA ATTCTTCACT GTCTCAATCT TACAAGGATC CACCATCACT CCATCCTTAG 61 AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 121 CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 181 TCTTACTATT AGAGTATATC AGTATATCAT CAATAAACAT GATGACAAAG AGATCCAAAT 241 ATGGCTTAAA ATCCCGTTCA TCAAGCTCAT GAACGCAGCA GGGGCATTCG TAAGACCAAA 301 AGACATCACT ACAAATTCGT AATGCCCATA CCTGGTTCTA AAAGCAGTCT TTGGCACATC 361 CGTTGCCCGT ATTTTCAATT GATGATAACC GGATCTCAAG TCAATCTTAG AGAAGACACA 421 AGCACCTTGT AACTGATCGA ACAAGTCATC AATGCGAGGA AGTGGATACT TGTTCTTAAT 481 AGTTACCTTG TTCAACTGCC GGTAGTCTAT GCACATCCGA AAACTCCCAT CCTTCTTCTT 541 CACAAACCAA ACCGGAGCAC CCCAAGGAGA TGCACTTGGT CTAATGAAGA CTTTGCTCAA 601 AAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCCGCG GGAGCCATTC TATAAGGGGG 661 TATAGAAATG GGGCGAGTG Predicted gene structure (within gDNA segment 30591 to 33974): Exon 1 31497 32174 ( 678 n); cDNA 1 678 ( 678 n); score: 0.872 MATCH C08HBa0027D09.1+ SGN-E368762+ 0.872 678 0.999 C PGS_C08HBa0027D09.1+_SGN-E368762+ (31497 32174) Alignment (genomic DNA sequence = upper lines): GTCTTACCCA ACTCTTCACT GCTTCGATCT TAGTAGGATC CACCATCACT CCATCCTTAG 31556 |||| ||||| | |||||||| | || |||| || |||||| |||||||||| |||||||||| GTCTCACCCA ATTCTTCACT GTCTCAATCT TACAAGGATC CACCATCACT CCATCCTTAG 60 AAACCACATG CCCCAAGAAG GACACTGAAT CTAGCCAAAA CTCACACTTG GAGAATTTGG 31616 ||||||| || |||||||||| ||||||| || ||| |||||| ||||||||| ||||| |||| AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 120 CATAGAGCTT TTTCTCCCTC AACATTTCCA ATACAATCCT CAAGTGCTCC TCATGTTCTT 31676 |||| ||||| |||||||||| |||||||| | ||||||| || ||| |||||| |||||||| | CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 180 TCCTGCTCTT TGAGTATACC AATATATCAT CTATGAATAC AATGACAAAG AGATCTAGAT 31736 || | || || ||||||| | | |||||||| | || || | ||||||||| ||||| | || TCTTACTATT AGAGTATATC AGTATATCAT CAATAAACAT GATGACAAAG AGATCCAAAT 240 AGGGCTTAAA AATCCCATTC ATCAAGCTCA TGAAAGCAGC GGGGGCATTC GTAAGCCCAA 31796 | ||||| || |||||| ||| |||||||||| |||| ||||| ||||||||| ||||| |||| ATGGCTT-AA AATCCCGTTC ATCAAGCTCA TGAACGCAGC AGGGGCATTC GTAAGACCAA 299 AAGACATTAC TAAGAACTCA TAATGTCCAT ATCTGGTTCG AAAAGCAGTC TTGGGCACAT 31856 ||||||| || || || || ||||| |||| | ||||||| |||||||||| || ||||||| AAGACATCAC TACAAATTCG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC TTTGGCACAT 359 CCGTTGCCCA TATTTTCAAT TGATGATAAC CAGATCTCAA ATTGTTTTTT GAGAAGGTAC 31916 ||||||||| |||||||||| |||||||||| | |||||||| | | || |||||| || CCGTTGCCCG TATTTTCAAT TGATGATAAC CGGATCTCAA GTCAATCTTA GAGAAGACAC 419 AAGCACCTTG TAACTTATCG AACAAATCAT CGATGCGAGG AAGAGGATAC CTGTTCTTAA 31976 |||||||||| ||||| |||| ||||| |||| | |||||||| ||| |||||| ||||||||| AAGCACCTTG TAACTGATCG AACAAGTCAT CAATGCGAGG AAGTGGATAC TTGTTCTTAA 479 TAGTTACCTT ATTCAGTTGC CTGTAGTCTA TGCACATCCT AAAACTTCCA TCCTTCTTCT 32036 |||||||||| |||| ||| | |||||||| ||||||||| |||||| ||| |||||||||| TAGTTACCTT GTTCAACTGC CGGTAGTCTA TGCACATCCG AAAACTCCCA TCCTTCTTCT 539 TCACAAACAA AACGGGAGCA CCCCTTAGGG ATGCACTTGG TCTAATAAAG CCTTTTCCTA 32096 |||||||| | ||| |||||| |||| | | |||||||||| |||||| ||| |||| | | TCACAAACCA AACCGGAGCA CCCCAAGGAG ATGCACTTGG TCTAATGAAG ACTTTGCTCA 599 ACAATTCTTG AAGTT-GGCC TTTACCTCTC TTAACTCAGC GGGAGCCATT CTATAAGGGG 32155 | || ||||| ||||| |||| |||| ||||| ||||||| || |||||||||| |||||||||| AAAACTCTTG AAGTTGGGCC TTTAACTCTC TTAACTCCGC GGGAGCCATT CTATAAGGGG 659 GTATGGAAAT GAGGCAAGT 32174 |||| ||||| | ||| ||| GTATAGAAAT GGGGCGAGT 678 hqPGS_C08HBa0027D09.1+_SGN-E368762+ (31497 32174) ******************************************************************************** EST sequence 143 +strand 358 n (File: SGN-E240817+) 1 GTCTCACCCA TTTCTTCACT GTCTCAATCT TACCAGGATC CACCATCACT CCATCCTTAG 61 AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 121 CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 181 TCTTACTATT AGAGGATATC AGTATATCAT CAATGAACAT GATGACGCAG AGATCCAAAT 241 ATGGCTTAAA ATCCCGTTCA TCAAGCTCAT GAACGCAGCA GGGGCATTCG TAAGACCAAA 301 AGACATCACT ACAAATTCGT AATGCCCATA CCTGGTTCTA AAAGCAGTCT TTGGCACA Predicted gene structure (within gDNA segment 30591 to 34903): Exon 1 31497 31855 ( 359 n); cDNA 1 358 ( 358 n); score: 0.866 MATCH C08HBa0027D09.1+ SGN-E240817+ 0.866 359 1.003 C PGS_C08HBa0027D09.1+_SGN-E240817+ (31497 31855) Alignment (genomic DNA sequence = upper lines): GTCTTACCCA ACTCTTCACT GCTTCGATCT TAGTAGGATC CACCATCACT CCATCCTTAG 31556 |||| ||||| |||||||| | || |||| || |||||| |||||||||| |||||||||| GTCTCACCCA TTTCTTCACT GTCTCAATCT TACCAGGATC CACCATCACT CCATCCTTAG 60 AAACCACATG CCCCAAGAAG GACACTGAAT CTAGCCAAAA CTCACACTTG GAGAATTTGG 31616 ||||||| || |||||||||| ||||||| || ||| |||||| ||||||||| ||||| |||| AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 120 CATAGAGCTT TTTCTCCCTC AACATTTCCA ATACAATCCT CAAGTGCTCC TCATGTTCTT 31676 |||| ||||| |||||||||| |||||||| | ||||||| || ||| |||||| |||||||| | CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 180 TCCTGCTCTT TGAGTATACC AATATATCAT CTATGAATAC AATGACAAAG AGATCTAGAT 31736 || | || || ||| ||| | | |||||||| | ||||| | ||||| || ||||| | || TCTTACTATT AGAGGATATC AGTATATCAT CAATGAACAT GATGACGCAG AGATCCAAAT 240 AGGGCTTAAA AATCCCATTC ATCAAGCTCA TGAAAGCAGC GGGGGCATTC GTAAGCCCAA 31796 | ||||| || |||||| ||| |||||||||| |||| ||||| ||||||||| ||||| |||| ATGGCTT-AA AATCCCGTTC ATCAAGCTCA TGAACGCAGC AGGGGCATTC GTAAGACCAA 299 AAGACATTAC TAAGAACTCA TAATGTCCAT ATCTGGTTCG AAAAGCAGTC TTGGGCACA 31855 ||||||| || || || || ||||| |||| | ||||||| |||||||||| || |||||| AAGACATCAC TACAAATTCG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC TTTGGCACA 358 hqPGS_C08HBa0027D09.1+_SGN-E240817+ (31497 31855) ******************************************************************************** EST sequence 13 +strand 737 n (File: SGN-E578078+) 1 GAACTCATAA TGCTCATACC TGGTCCGAAA AGCAGTCTTG GGCACATCTG CTGCTCGTAT 61 TTTCAATTGA TGATAACCAG ATCTCAAGTC GATTTTTGAG AAGGTACAAG CACCTTGTAA 121 CTGATCGAAC AAATCATCAA TGTGAGGAAG ATATTTTCGA AAATTCTCTC ACTATGGTGA 181 TTGACTCAAT TGGAGGAATA TCGGACTCAA GATCTTTGAC TCTTACAATA TGGTAAATTC 241 ACACTTTTGA GATTATTTTG CAATATTTTA AACAAGAGAT GATATGACCT TTAGGAATTA 301 AATTACTGCC ATTCCACTCT AAGACAGGTT CATTAGGAAA GTTGAATTTA ACAACTCTTG 361 TTCGACAGTC TATGGAAGCA TAACAAGCAT GCAACCAATC CATTCCCAAG ATAAAATAAA 421 AATCGACCAT ATCGAATTCC ACCAAATCCA CCCAAGTAAC TCTATTGGGG AAATATATAG 481 GATAACTCCT AAAGACTCTT CTAGCAACAA TGGAGTCACC TACCGGGGTT GTAACAAAAA 541 ATATTTTCTC AAAGGCCTGG CGTCGAATAT GAAGAGACAT ACTCACCCGT TATGGATGCA 601 ATAACATTGG TTTATCTCAT TAGTTTCACA GTCCATGAGC AACTTGAAAT GCATTTGATG 661 GATGTGGTTA CAACCTACCT TTATGGATCA TTTAAATATG AGATATACAT GAAAATTCCT 721 GAAGGATTTG CGATTGC Predicted gene structure (within gDNA segment 30985 to 38691): Exon 1 31810 31961 ( 152 n); cDNA 1 152 ( 152 n); score: 0.901 Intron 1 31962 32244 ( 283 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.64) Exon 2 32245 32628 ( 384 n); cDNA 153 536 ( 384 n); score: 0.536 MATCH C08HBa0027D09.1+ SGN-E578078+ 0.640 536 0.727 C PGS_C08HBa0027D09.1+_SGN-E578078+ (31810 31961,32245 32628) Alignment (genomic DNA sequence = upper lines): GAACTCATAA TGTCCATATC TGGTTCGAAA AGCAGTCTTG GGCACATCCG TTGCCCATAT 31869 |||||||||| || |||| | |||| ||||| |||||||||| |||||||| | ||| | ||| GAACTCATAA TGCTCATACC TGGTCCGAAA AGCAGTCTTG GGCACATCTG CTGCTCGTAT 60 TTTCAATTGA TGATAACCAG ATCTCAAATT GTTTTTTGAG AAGGTACAAG CACCTTGTAA 31929 |||||||||| |||||||||| ||||||| | | |||||||| |||||||||| |||||||||| TTTCAATTGA TGATAACCAG ATCTCAAGTC GATTTTTGAG AAGGTACAAG CACCTTGTAA 120 CTTATCGAAC AAATCATCGA TGCGAGGAAG AGGATACCTG TTCTTAATAG TTACCTTATT 31989 || ||||||| |||||||| | || ||||||| | CTGATCGAAC AAATCATCAA TGTGAGGAAG AT........ .......... .......... 152 CAGTTGCCTG TAGTCTATGC ACATCCTAAA ACTTCCATCC TTCTTCTTCA CAAACAAAAC 32049 .......... .......... .......... .......... .......... .......... 152 GGGAGCACCC CTTAGGGATG CACTTGGTCT AATAAAGCCT TTTCCTAACA ATTCTTGAAG 32109 .......... .......... .......... .......... .......... .......... 152 TTGGCCTTTA CCTCTCTTAA CTCAGCGGGA GCCATTCTAT AAGGGGGTAT GGAAATGAGG 32169 .......... .......... .......... .......... .......... .......... 152 CAAGTACCCG GCTCCAGATC AATGCAAAAG TCAATATACC TATCCGGTGG CATACCAGGA 32229 .......... .......... .......... .......... .......... .......... 152 AGGTCTGGAG GAAACACATC CAAAAACTCA CGGACTATCG AAACCGACTC AATTGAAGGT 32289 | | | |||| || | ||||| | | ||||| ||||| ||| .......... .....ATTTT CGAAAATTCT CTCACTATGG TGATTGACTC AATTGGAGGA 197 ACTTGGGTAG TATCATCCCT GAGGTGTGCC AAGAAAGCTA A-ACACCCTT TACTAACCAT 32348 | | || | ||| | || | | | || | | | | ||| ||| | | || ATATCGGACT CAAGATCTTT GA-CTCTTAC AATATGGTAA ATTCACACTT TTGAGATTAT 256 TCTCTTAGCA CGAAGAAAGG AGACGATACG AACCGGATTG GAAGTGTAGT -C-ACCCTCC 32406 | | | | | | | ||| |||| | ||| | | ||| | | | | || | | TTTGCAATAT TTTAAACAAG AGATGATATG -ACC-TTTAG GAATTAAATT ACTGCCATTC 314 CACACTAACG GATCTGTCCT AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG 32466 ||| |||| | | | ||| | || | ||| | | | ||| || | | CACTCTAAGA CAGGTTCATT AGGAAAGTTG AATTTAACAA CTCTTGTTCG ACAGTCTATG 374 ATTGCAAAAT TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT 32526 ||| || | | | |||| ||| |||| || | || || || ||||| || GAAGCATAAC AAGCATGCAA CCAATCCATT CCCAAGATAA AATAAAAATC GACCATATCG 434 AGGATAACCA AGTCTACATG AGTATTGCTC CCCACAAAAG TCAAAAGACA AGACCTATAC 32586 | |||| | || || |||| || ||| | | || | | |||| | AATTCCACCA AATCCACCCA AGTAACTCTA TTGGGGAAAT ATATAGGATA ACTCCTAAAG 494 ACCTTTTCAA CTATCAA-AG ACTCACCCAC CGGAGTAGAA ACA 32628 | || ||| | | ||| | | ||||| || ||| || | | ||| A-CTCTTCTA GCAACAATGG AGTCACCTAC CGGGGTTGTA ACA 536 hqPGS_C08HBa0027D09.1+_SGN-E578078+ (31810 31961) ******************************************************************************** EST sequence 64 +strand 559 n (File: SGN-E244046+) 1 AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 61 AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 121 CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 181 CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 241 CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 301 CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 361 TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 421 GTTCATGCAT AAGTCTCTCA GAGAAGTGTT GACCGGTCGA AGGTGGACCC CCAACTACAG 481 TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 541 AAGCACCATT AAACTCACC Predicted gene structure (within gDNA segment 31556 to 35277): Exon 1 32624 33061 ( 438 n); cDNA 1 438 ( 438 n); score: 0.877 Intron 1 33062 33097 ( 36 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.88) Exon 2 33098 33218 ( 121 n); cDNA 439 559 ( 121 n); score: 0.884 MATCH C08HBa0027D09.1+ SGN-E244046+ 0.878 559 1.000 C PGS_C08HBa0027D09.1+_SGN-E244046+ (32624 33061,33098 33218) Alignment (genomic DNA sequence = upper lines): AAACACGAAT AGGCATGTCA AGAAAATCAC AATGTAAATC AAGACCAGTA GGAAATGAGG 32683 |||||||||| |||||| ||| || || |||| |||||||| |||||| || | |||||||| AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 60 AAGATACATA AGAAAATGTG GATCCAGGAT CAAATAATAC AGAAGCGATG TAATCACAAA 32743 |||||||||| |||||||||| |||||||||| |||| ||||| |||||| ||| ||||||||| AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 120 CCAAAAGATT ACCTGTGATA ACAGCATCAG ATGTCTCCGC TTCAGACCTC CCAGGGAAAG 32803 |||||||||| ||||||||| ||| |||||| || |||||| |||||||| | |||||||||| CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 180 CATAACAATG GGCCCTATCA CCTGTCTGCC CGTTGCCCCT ACCATGTTGC GCTGCAGTGG 32863 | |||||||| |||||||||| | || | ||||||||| ||||||||| | || ||||| CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 240 TTCCAGTTTG CCTGCCACCC TGATTGATTT GGTGACCACC ATTACCTCGG CCACCACGTT 32923 ||||||||| || |||| | | ||| |||||||||| ||| ||||| || |||||| CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 300 CTCCAGAATA GCGGCCTCTC CCATGACCAC CTCTACCTCT GACTATTGGG GGTCTGTAAC 32983 |||||||||| ||| |||| |||||||||| |||||||||| || |||| |||||||||| CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 360 TCTGTTTTGG ACAACATCTC TTAATATGTC CAATTTCCCC ACATCCATAA CACTCTCTGG 33043 |||||||||| |||| ||||| |||||||||| |||| ||||| ||| ||||| |||||||||| TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 420 GTTCAAGCAT AGGTCTCTGT GAGAACGACA GAGTCTGGGG ATAACCTCCA AACTCAGAGA 33103 ||||| |||| | |||||| |||||| GTTCATGCAT AAGTCTCT.. .......... .......... .......... ....CAGAGA 444 AATGTTGACC GGTCTGGGGT GGACCCCCAG CTACAGCCTG TAGTGAAGAC TGAATTGATC 33163 | |||||||| |||| ||| ||||||||| |||||| ||| |||||||||| ||||||| || AGTGTTGACC GGTCGAAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATTGGTC 504 GGGCTGGGTA ACCTCCTGAA CCCTGTCCTC TGGAGTAAGA ACCATTAAAC TCACC 33218 || ||| ||| || ||| ||| |||||||||| | | ||||| |||||||||| ||||| GGACTGAGTA ACTTCCCGAA CCCTGTCCTC TAGTGTAAGC ACCATTAAAC TCACC 559 hqPGS_C08HBa0027D09.1+_SGN-E244046+ (32624 33061,33098 33218) ******************************************************************************** EST sequence 58 +strand 763 n (File: SGN-E214046+) 1 ACGAATAGGC ATATCAAGAA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 61 TACATAAGAA AACGTGGATC CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACAAG 121 AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTTA GACCGCCCAG GGAAAGCGTA 181 ACAATGGGCC CTATAGTTTG TTTGTCCATT GCCCCTACCA TGTCGTGATG TAGTGGCCCC 241 AGTTTGTCCA TTACCTCTGC CGTTTTGGTG ACCACCATTG CCTCGACCAC CACGTCCTCC 301 AAAATAACGG CCTCTACCAT GACAACCTCT ACCTCTAACT ATTGGGGGTC TATAACTTGG 361 TCCGGGAAAA TTTCTCCTAA TATGTCCAAT CTCCCCACAT CCATAACATT CTCTAGAGTC 421 ACTCATAGGC CCCTCGGAGA AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTTTG 481 TAGTGAAGAC TGAATGGGTC GAACTGAGTA ACCTCCAGAA CCTTGTCCTC TAGAGTAAGA 541 ACCCTTAAAC TCATCTCCCC TTTGAAACCT CATCGATGTC GATGTCGTGG TGAAGTCGTC 601 TGGTTTCACT CCTTCCACTT CTATCAAAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT 661 TGCCGCTACC TGTAAGGGCG AAATCCGCAA TTCTGACCTC AACCCCTTCA CAACCGGCGA 721 ATCCGCTCTT GAGGGACTGA ACAGAGTTGA GTGGCATATC TGG Predicted gene structure (within gDNA segment 31596 to 34325): Exon 1 32628 33061 ( 434 n); cDNA 1 434 ( 434 n); score: 0.840 Intron 1 33062 33097 ( 36 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.88) Exon 2 33098 33427 ( 330 n); cDNA 435 763 ( 329 n); score: 0.838 MATCH C08HBa0027D09.1+ SGN-E214046+ 0.839 764 1.001 C PGS_C08HBa0027D09.1+_SGN-E214046+ (32628 33061,33098 33427) Alignment (genomic DNA sequence = upper lines): ACGAATAGGC ATGTCAAGAA AATCACAATG TAAATCAAGA CCAGTAGGAA ATGAGGAAGA 32687 |||||||||| || ||||||| | |||||||| ||||| ||| ||| ||| || |||||||||| ACGAATAGGC ATATCAAGAA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 60 TACATAAGAA AATGTGGATC CAGGATCAAA TAATACAGAA GCGATGTAAT CACAAACCAA 32747 |||||||||| || ||||||| |||||||||| ||||| ||| || ||| ||| ||||||| | TACATAAGAA AACGTGGATC CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACAAG 120 AAGATTACCT GTGATAACAG CATCAGATGT CTCCGCTTCA GACCTCCCAG GGAAAGCATA 32807 |||||||||| ||||| |||| ||||||||| |||||||| | |||| ||||| ||||||| || AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTTA GACCGCCCAG GGAAAGCGTA 180 ACAATGGGCC CTATCACCTG TCTGCCCGTT GCCCCTACCA TGTTGCGCTG CAGTGGTTCC 32867 |||||||||| |||| || | || || || |||||||||| ||| | | || ||||| || ACAATGGGCC CTATAGTTTG TTTGTCCATT GCCCCTACCA TGTCGTGATG TAGTGGCCCC 240 AGTTTGCCTG CCACC-CTGA TTGATTTGGT GACCACCATT ACCTCGGCCA CCACGTTCTC 32926 |||||| | ||| ||| | |||||| |||||||||| ||||| ||| |||||| ||| AGTTTGTCCA TTACCTCTG- CCGTTTTGGT GACCACCATT GCCTCGACCA CCACGTCCTC 299 CAGAATAGCG GCCTCTCCCA TGACCACCTC TACCTCTGAC TATTGGGGGT CTGTAACTCT 32986 || |||| || |||||| ||| |||| ||||| ||||||| || |||||||||| || ||||| CAAAATAACG GCCTCTACCA TGACAACCTC TACCTCTAAC TATTGGGGGT CTATAACTTG 359 GTTTTGGACA ACATCTCTTA ATATGTCCAA TTTCCCCACA TCCATAACAC TCTCTGGGTT 33046 || ||| | | |||| || |||||||||| | |||||||| ||||||||| ||||| | | GTCCGGGAAA ATTTCTCCTA ATATGTCCAA TCTCCCCACA TCCATAACAT TCTCTAGAGT 419 CAAGCATAGG TCTCTGTGAG AACGACAGAG TCTGGGGATA ACCTCCAAAC TCAGAGAAAT 33106 || |||||| | || | ||||| | CACTCATAGG CCCCT..... .......... .......... .......... .CGGAGAAGT 443 GTTGACCGGT CTGGGGTGGA CCCCCAGCTA CAGCCTGTAG TGAAGACTGA ATTGATCGGG 33166 |||||||||| ||| |||||| |||||| ||| ||| ||||| |||||||||| || | ||| GTTGACCGGT CTGAGGTGGA CCCCCAACTA CAGTTTGTAG TGAAGACTGA ATGGGTCGAA 503 CTGGGTAACC TCCTGAACCC TGTCCTCTGG AGTAAGAACC ATTAAACTCA CCTCCCTTAC 33226 ||| |||||| ||| ||||| |||||||| | |||||||||| ||||||||| ||||| | CTGAGTAACC TCCAGAACCT TGTCCTCTAG AGTAAGAACC CTTAAACTCA TCTCCCCTTT 563 GAAACTTTTT AAAGGTCAAT GCCATGGTGA AGTCTTCTGG ATTCACTCCC TCCACTTCTA 33286 ||||| | | | ||| || | | |||||| |||| ||||| |||||||| |||||||||| GAAACCTCAT CGATGTCGAT GTCGTGGTGA AGTCGTCTGG TTTCACTCCT TCCACTTCTA 623 TCACAATATC TACCACTTCC TGAAAGGATT TTGCTGTAGC AGCTACCTGT AAGGCTGAAA 33346 ||| || || ||||||||| || ||||||| |||| || || ||||||||| |||| |||| TCAAAAAGTC TACCACTTCT TGGAAGGATT TTGCCGTTGC CGCTACCTGT AAGGGCGAAA 683 TCCGCAAATT TGACCTCAAC CCCTTCACAA AATGGCGAAT CCGCTCTTG- TGGACTGAAG 33405 ||||||| | |||||||||| |||||||| | | ||||||| ||||||||| |||||||| TCCGCAATTC TGACCTCAAC CCCTTCAC-A ACCGGCGAAT CCGCTCTTGA GGGACTGAA- 741 CAAAGCTGGG TGGCATATCT GG 33427 || || || | |||||||||| || CAGAGTTGAG TGGCATATCT GG 763 hqPGS_C08HBa0027D09.1+_SGN-E214046+ (32628 33061,33098 33427) ******************************************************************************** EST sequence 18 +strand 716 n (File: SGN-E577713+) 1 CGGTGGATAC CTAGGCACCC AGAGACGAGG AAGGGCGTAG TAATCGACGA AATGCTTCGG 61 GGAGTTGAAA ATAAGCATAG ATCCGGAGAT TCCCGAATAG GGCAACCTTT CGAACTGCTG 121 CTGAATCCAT GGGCAGGCAA GAGACAACCT GGCGAACTGA AACATCTTAG TAGCCAGAGG 181 AAAAGAAAGC AAATAAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 241 AAGCCATGCA ATCACAAACC AGAAGATTAC CTGTGATGAC AACATCAGAT GCCTCCGCTT 301 CACACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCGTT CGTCTGTCCG TTGCCCCTAC 361 CATGTTGTGA TGTAGTGGCC CAAGTTTGCC CATTACCTCT GCCGTTTTGG TGACCACCAT 421 TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 481 CTATTGGGGG TCTATAACTT TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC 541 ATCCATACCA TTCTCTGGAG TCAATCCTAG GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 601 GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTCAATTGG TCGGACTGAG TAACTTCCCG 661 AACCCTGTCC TCTAGTGTAA GAACCATTAA ACTCACCTCC CTTTCGAAGC CTTTTT Predicted gene structure (within gDNA segment 29531 to 36952): Exon 1 32673 33061 ( 389 n); cDNA 188 576 ( 389 n); score: 0.852 Intron 1 33062 33097 ( 36 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.88) Exon 2 33098 33236 ( 139 n); cDNA 577 715 ( 139 n); score: 0.878 MATCH C08HBa0027D09.1+ SGN-E577713+ 0.859 528 0.737 C PGS_C08HBa0027D09.1+_SGN-E577713+ (32673 33061,33098 33236) Alignment (genomic DNA sequence = upper lines): AGGAAATGAG GAAGATACAT AAGAAAATGT GGATCCAGGA TCAAATAATA CAGAAGCGAT 32732 || |||| || |||||||||| ||||||| || |||||||||| ||||| |||| ||||||| || AGCAAATAAG GAAGATACAT AAGAAAACGT GGATCCAGGA TCAAACAATA CAGAAGCCAT 247 GTAATCACAA ACCAAAAGAT TACCTGTGAT AACAGCATCA GATGTCTCCG CTTCAGACCT 32792 | |||||||| |||| ||||| |||||||||| ||| ||||| |||| ||||| ||||| ||| GCAATCACAA ACCAGAAGAT TACCTGTGAT GACAACATCA GATGCCTCCG CTTCACACCG 307 CCCAGGGAAA GCATAACAAT GGGCCCTATC ACCTGTCTGC CCGTTGCCCC TACCATGTTG 32852 |||||||||| || ||||||| |||||||||| ||||| |||||||||| |||||||||| CCCAGGGAAA GCGTAACAAT GGGCCCTATC GTTCGTCTGT CCGTTGCCCC TACCATGTTG 367 CGCTGCAGTG GTTCCAGTTT GCCTGCCACC -CTGATTGAT TTGGTGACCA CCATTACCTC 32911 | || |||| | | ||||| ||| ||| ||| | | |||||||||| |||||||||| TGATGTAGTG GCCCAAGTTT GCCCATTACC TCTG-CCGTT TTGGTGACCA CCATTACCTC 426 GGCCACCACG TTCTCCAGAA TAGCGGCCTC TCCCATGACC ACCTCTACCT CTGACTATTG 32971 | |||||||| | |||||||| || ||||||| | |||||||| |||||||||| || |||||| GACCACCACG TCCTCCAGAA TAACGGCCTC TACCATGACC ACCTCTACCT CTAGCTATTG 486 GGGGTCTGTA ACTCTGTTTT GGACAACATC TCTTAATATG TCCAATTTCC CCACATCCAT 33031 ||||||| || ||| ||| | |||||| | || ||||||| |||||| ||| |||||||||| GGGGTCTATA ACTTTGTCTG GGACAATTTT TCCTAATATG TCCAATCTCC CCACATCCAT 546 AACACTCTCT GGGTTCAAGC ATAGGTCTCT GTGAGAACGA CAGAGTCTGG GGATAACCTC 33091 | || ||||| || |||| | |||| | || ACCATTCTCT GGAGTCAATC CTAGGCCCCT .......... .......... .......... 576 CAAACTCAGA GAAATGTTGA CCGGTCTGGG GTGGACCCCC AGCTACAGCC TGTAGTGAAG 33151 | || ||| |||||| |||||||| | |||| ||||| | |||||| | |||||||||| ......CGGA GAAGTGTTGA CCGGTCTGAG GTGGTCCCCC AACTACAGTC TGTAGTGAAG 630 ACTGAATTGA TCGGGCTGGG TAACCTCCTG AACCCTGTCC TCTGGAGTAA GAACCATTAA 33211 ||| ||||| |||| ||| | |||| ||| | |||||||||| ||| | |||| |||||||||| ACTCAATTGG TCGGACTGAG TAACTTCCCG AACCCTGTCC TCTAGTGTAA GAACCATTAA 690 ACTCACCTCC CTTACGAAAC TTTTT 33236 |||||||||| ||| |||| | |||| ACTCACCTCC CTTTCGAAGC CTTTT 715 hqPGS_C08HBa0027D09.1+_SGN-E577713+ (32673 33061,33098 33236) ******************************************************************************** EST sequence 115 +strand 698 n (File: SGN-E356209+) 1 TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCG TTCGTCTGTC CGTTGCCCCT 61 ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTGCCATTTT GGTGACCACC 121 ATTACCTCGA CCACCACGTC CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT 181 AGCTATTGGG GGTCTATAAC TTTGTCTGGG ACAATTTTTC CTAATATGTC CAATCTCCCC 241 ACATCCATAA CATTCTCTGG AGTCAAGCAT AGGCCCCTCG GAGAAGTGTT AACCGGTCTG 301 AGGTGGTCTC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC 361 CGAACCCTGT CCTCTAGTGT AAGAACCATT AAACTCACCT CCCTTCCGAA ACCTTTTTGA 421 TGTCGATGTT GTGGTGAAGT CGTCTGGCTT CACTCCTTCC ACTTCTATCA CAAAGTCTAC 481 CACTTCTTGG AAGGATTTTG CCGTTGCCGC TATCTGTAAG GACGAAATCC GCAATTCTGA 541 CCTCAACCCC TTCACAAACC GGCGAATCCG CTCTTGAGGA CTGAAACAGA GTTGAGTGGC 601 ATATCTGGAT AGTGCACGAA ACTTAGCCTC ATAAGCATTA ACCGACATCC TACCTTGCTC 661 TAGGCTCAAG AACTCATCCC TTTTCCTATC CCTCAAAG Predicted gene structure (within gDNA segment 31986 to 35225): Exon 1 32784 33061 ( 278 n); cDNA 1 278 ( 278 n); score: 0.844 Intron 1 33062 33097 ( 36 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0.84) Exon 2 33098 33516 ( 419 n); cDNA 279 697 ( 419 n); score: 0.864 MATCH C08HBa0027D09.1+ SGN-E356209+ 0.856 697 0.999 C PGS_C08HBa0027D09.1+_SGN-E356209+ (32784 33061,33098 33516) Alignment (genomic DNA sequence = upper lines): TTCAGACCTC CCAGGGAAAG CATAACAATG GGCCCTATCA CCTGTCTGCC CGTTGCCCCT 32843 |||||||| | |||||||||| | |||||||| ||||||||| ||||| | |||||||||| TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCG TTCGTCTGTC CGTTGCCCCT 60 ACCATGTTGC GCTGCAGTGG TTCCAGTTTG CCTGCCACC- CTGATTGATT TGGTGACCAC 32902 ||||||||| | || ||||| |||||||| || ||| ||| || |||||||||| ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTG-CCATTT TGGTGACCAC 119 CATTACCTCG GCCACCACGT TCTCCAGAAT AGCGGCCTCT CCCATGACCA CCTCTACCTC 32962 |||||||||| ||||||||| ||||||||| | |||||||| ||||||||| |||||||||| CATTACCTCG ACCACCACGT CCTCCAGAAT AACGGCCTCT ACCATGACCA CCTCTACCTC 179 TGACTATTGG GGGTCTGTAA CTCTGTTTTG GACAACATCT CTTAATATGT CCAATTTCCC 33022 | ||||||| |||||| ||| || ||| | | ||||| | | | |||||||| ||||| |||| TAGCTATTGG GGGTCTATAA CTTTGTCTGG GACAATTTTT CCTAATATGT CCAATCTCCC 239 CACATCCATA ACACTCTCTG GGTTCAAGCA TAGGTCTCTG TGAGAACGAC AGAGTCTGGG 33082 |||||||||| ||| |||||| | ||||||| |||| | || CACATCCATA ACATTCTCTG GAGTCAAGCA TAGGCCCCT. .......... .......... 278 GATAACCTCC AAACTCAGAG AAATGTTGAC CGGTCTGGGG TGGACCCCCA GCTACAGCCT 33142 | ||| || |||| || ||||||| || ||| | |||| |||||| || .......... .....CGGAG AAGTGTTAAC CGGTCTGAGG TGGTCTCCCA ACTACAGTCT 323 GTAGTGAAGA CTGAATTGAT CGGGCTGGGT AACCTCCTGA ACCCTGTCCT CTGGAGTAAG 33202 |||||||||| |||||||| | ||| ||| || ||| ||| || |||||||||| || | ||||| GTAGTGAAGA CTGAATTGGT CGGACTGAGT AACTTCCCGA ACCCTGTCCT CTAGTGTAAG 383 AACCATTAAA CTCACCTCCC TTACGAAACT TTTTAAAGGT CAATGCCATG GTGAAGTCTT 33262 |||||||||| |||||||||| || |||||| |||| | || | ||| || |||||||| | AACCATTAAA CTCACCTCCC TTCCGAAACC TTTTTGATGT CGATGTTGTG GTGAAGTCGT 443 CTGGATTCAC TCCCTCCACT TCTATCACAA TATCTACCAC TTCCTGAAAG GATTTTGCTG 33322 |||| ||||| ||| |||||| |||||||||| |||||||| ||| || ||| |||||||| | CTGGCTTCAC TCCTTCCACT TCTATCACAA AGTCTACCAC TTCTTGGAAG GATTTTGCCG 503 TAGCAGCTAC CTGTAAGGCT GAAATCCGCA AATTTGACCT CAACCCCTTC ACAAAATGGC 33382 | || |||| |||||||| |||||||||| | | |||||| |||||||||| ||||| ||| TTGCCGCTAT CTGTAAGGAC GAAATCCGCA ATTCTGACCT CAACCCCTTC ACAAACCGGC 563 GAATCCGCTC TTGTGGACTG AAGCAAAGCT GGGTGGCATA TCTGGATAGT GCACGAAACC 33442 |||||||||| ||| |||||| || || || | | |||||||| |||||||||| ||||||||| GAATCCGCTC TTGAGGACTG AAACAGAGTT GAGTGGCATA TCTGGATAGT GCACGAAACT 623 TAGCCTCATA AGCAGTAACT GACATCCTGC CTTGCTCTAG GCTTAGAAAC TAATCTCTCC 33502 |||||||||| |||| |||| |||||||| | |||||||||| ||| | ||| | ||| || TAGCCTCATA AGCATTAACC GACATCCTAC CTTGCTCTAG GCTCAAGAAC TCATCCCTTT 683 TCCTATCCCT CAAA 33516 |||||||||| |||| TCCTATCCCT CAAA 697 hqPGS_C08HBa0027D09.1+_SGN-E356209+ (32784 33061,33098 33516) ******************************************************************************** EST sequence 92 +strand 658 n (File: SGN-E355232+) 1 TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATAGTTACCT TGTTCAGTTG TCTGTAGTCT 61 ATGCACATTC TAAAACTTCC ATCCTTCTTC TTCACAAATA AAACTGGAGC ACCCCAAGGA 121 GATGCACTTG GTCTAATGAA GACCTTGCTC AACAACTCTT GAAGTTGAGC CTTTAACTCT 181 CTTAATTCGG CGGGAGCCAT TCTATAAGGG GGTATAGAAA TGGGGCGTGT GCCTGGTTCA 241 AGATCGATAC AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGAAAC 301 ACGTCCAAAA ACTCGCGGAC TACCGAAACC GACTCAATTG AGGGTACTTG AGTAGTGTCA 361 TCCTTGAGAT GTGCCAAGAA AGCTGAACAC CCTTTACTAA CCATTTTCTT AGCACGAAGA 421 AAGGATATGA TACGCACCAG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 481 CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATCGCAAA ATTTGGAGAA 541 AGCCAAGTCA TACCCAGAAT TACATCAATG TCACCCATTT CTAAAAAACC AAATCTACAT 601 AAGTGTTGCT CCCCACGAAA TTCNACAAAA CAGAACTATG TACCTTTTCA ACTACCAC Predicted gene structure (within gDNA segment 31319 to 34040): Exon 1 31946 32602 ( 657 n); cDNA 1 657 ( 657 n); score: 0.885 MATCH C08HBa0027D09.1+ SGN-E355232+ 0.885 657 0.998 C PGS_C08HBa0027D09.1+_SGN-E355232+ (31946 32602) Alignment (genomic DNA sequence = upper lines): TCGATGCGAG GAAGAGGATA CCTGTTCTTA ATAGTTACCT TATTCAGTTG CCTGTAGTCT 32005 || ||||||| |||||||||| | |||||||| |||||||||| | |||||||| ||||||||| TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATAGTTACCT TGTTCAGTTG TCTGTAGTCT 60 ATGCACATCC TAAAACTTCC ATCCTTCTTC TTCACAAACA AAACGGGAGC ACCCCTTAGG 32065 |||||||| | |||||||||| |||||||||| |||||||| | |||| ||||| ||||| | ATGCACATTC TAAAACTTCC ATCCTTCTTC TTCACAAATA AAACTGGAGC ACCCCAAGGA 120 GATGCACTTG GTCTAATAAA GCCTTTTCCT AACAATTCTT GAAGTTG-GC CTTTACCTCT 32124 |||||||||| ||||||| || | | || | ||||| |||| ||||||| || ||||| |||| GATGCACTTG GTCTAATGAA GACCTTGCTC AACAACTCTT GAAGTTGAGC CTTTAACTCT 180 CTTAACTCAG CGGGAGCCAT TCTATAAGGG GGTATGGAAA TGAGGCAAGT ACCCGGCTCC 32184 ||||| || | |||||||||| |||||||||| ||||| |||| || ||| || || || || CTTAATTCGG CGGGAGCCAT TCTATAAGGG GGTATAGAAA TGGGGCGTGT GCCTGGTTCA 240 AGATCAATGC AAAAGTCAAT ATACCTATCC GGTGGCATAC CAGGAAGGTC TGGAGGAAAC 32244 ||||| || | | |||||||| || |||||| |||||||||| ||||||| || || ||||||| AGATCGATAC AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGAAAC 300 ACATCCAAAA ACTCACGGAC TATCGAAACC GACTCAATTG AAGGTACTTG GGTAGTATCA 32304 || ||||||| |||| ||||| || ||||||| |||||||||| | |||||||| ||||| ||| ACGTCCAAAA ACTCGCGGAC TACCGAAACC GACTCAATTG AGGGTACTTG AGTAGTGTCA 360 TCCCTGAGGT GTGCCAAGAA AGCTAAACAC CCTTTACTAA CCATTCTCTT AGCACGAAGA 32364 ||| |||| | |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| TCCTTGAGAT GTGCCAAGAA AGCTGAACAC CCTTTACTAA CCATTTTCTT AGCACGAAGA 420 AAGGAGACGA TACGAACCGG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 32424 ||||| | || |||| ||| | |||||||||| |||||||||| |||||||||| |||||||||| AAGGATATGA TACGCACCAG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 480 CTAGGCTTGG CTAACGTCAC AGTTTTAGCA TTACAATCCA AGATTGCAAA ATTTGGAGAA 32484 | |||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATCGCAAA ATTTGGAGAA 540 AGCCAAGTCA TACCCAGAAT TACATCGAAG TCAACCATTT CTAGGATAAC CAAGTCTACA 32544 |||||||||| |||||||||| |||||| | | ||| |||||| ||| | ||| ||| |||||| AGCCAAGTCA TACCCAGAAT TACATCAATG TCACCCATTT CTA-AAAAAC CAAATCTACA 599 TGAGTATTGC TCCCCACAAA AGTCAAAAGA CAAGACCTAT ACACCTTTTC AACTATCA 32602 | ||| |||| ||||||| || | || | | | ||| |||| |||||||| ||||| || TAAGTGTTGC TCCCCACGAA ATTCNACAAA ACAGAACTAT GTACCTTTTC AACTACCA 657 hqPGS_C08HBa0027D09.1+_SGN-E355232+ (31946 32602) ******************************************************************************** EST sequence 99 +strand 761 n (File: SGN-E355244+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 GCAAATGAGG AAGATACANT AGAAAACGTG GATCCCAGGA TCAACAATAC AGAAGCCATG 721 CAATCACAAT CGAAAGATTA CCTGTGATGA CAGCATCTAA T Predicted gene structure (within gDNA segment 31334 to 34599): Exon 1 32018 32775 ( 758 n); cDNA 4 761 ( 758 n); score: 0.881 MATCH C08HBa0027D09.1+ SGN-E355244+ 0.881 758 0.996 C PGS_C08HBa0027D09.1+_SGN-E355244+ (32018 32775) Alignment (genomic DNA sequence = upper lines): AAACTTCCAT CCTTCTTCTT CACAAACAAA ACGGGAGCAC CCCTTAGGGA TGCACTTGGT 32077 ||||| |||| |||||||||| |||||||||| | ||||||| ||| | || |||||||||| AAACTCCCAT CCTTCTTCTT CACAAACAAA ATCGGAGCAC CCCAAGGAGA TGCACTTGGT 63 CTAATAAAGC CTTTTCCTAA CAATTCTTGA AGTTGG-CCT TTACCTCTCT TAACTCAGCG 32136 ||||| || | |||| | || ||| |||||| |||||| ||| ||| |||||| |||||| || CTAATGAAAC CTTTGCTCAA CAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCTACG 123 GGAGCCATTC TATAAGGGGG TATGGAAATG AGGCAAGTAC CCGGCTCCAG ATCAATGCAA 32196 |||||||||| |||||||||| ||| |||||| ||| || | |||| || || ||| || || GGAGCCATTC TATAAGGGGG TATAGAAATG GGGCGTGTGC CCGGTTCAAG ATCGATACAG 183 AAGTCAATAT ACCTATCCGG TGGCATACCA GGAAGGTCTG GAGGAAACAC ATCCAAAAAC 32256 |||||||||| |||||| || |||||||||| ||||| |||| ||| ||||| |||||||||| AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG CAGGGAACAC ATCCAAAAAC 243 TCACGGACTA TCGAAACCGA CTCAATTGAA GGTACTTGGG TAGTATCATC CCTGAGGTGT 32316 |||| ||||| | ||||||| |||||| ||| |||||||||| |||| ||||| | |||| ||| TCACAGACTA TAAAAACCGA CTCAATCGAA GGTACTTGGG TAGTGTCATC CTTGAGATGT 303 GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG CACGAAGAAA GGAGACGATA 32376 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||| ||| GCCAAGAAAG CTAAACACCC TTTACTAACC ATTTTCTTAG CACGAAGAAA GGAGATGATG 363 CGAACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG GATCTGTCCT AGGCTTGGCT 32436 | ||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CACACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG GATCTGTCCC AGGCTTGGCT 423 AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT TTGGAGAAAG CCAAGTCATA 32496 || ||||| | |||||||||| |||||||||| || ||||| | |||||||| |||||||||| AATGTCACCG TTTTAGCATT ACAATCCAAG ATCGCAAATT GCGGAGAAAG CCAAGTCATA 483 CCCAGAATTA CATCGAAGTC AACCATTTCT AGGATAACCA AGTCTACATG AGTATTGCTC 32556 |||||||||| |||| || || |||||||||| | |||||||| | ||||||| ||| |||||| CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA AATCTACATA AGTGTTGCTC 543 CCCACAAAAG TCAAAAGACA AGACCTATAC ACCTTTTCAA CTATCAAAGA CTCACCCACC 32616 |||||||| ||| | ||| ||||||||| |||||||||| ||| || ||| |||||||||| CCCACAAAGT TCACCAAACA AGACCTATAT ACCTTTTCAA CTACCACAGA CTCACCCACC 603 GGAGTAGAAA CACGAATAGG CATGTCAAGA AAATCACAAT GTAAATCAAG ACCAGTAGGA 32676 |||||||||| |||||||||| ||| ||||| || ||||||| |||||| || ||| ||| | GGAGTAGAAA CACGAATAGG CATATCAAGT AATTCACAAT GTAAATTTAG ACCGTTAGCA 663 AATGAGGAAG ATACATAAGA AAATGTGGAT -CCAGGATCA AATAATACAG AAGCGATGTA 32735 |||||||||| ||||| ||| ||| |||||| |||||||| || ||||||| |||| ||| | AATGAGGAAG ATACANTAGA AAACGTGGAT CCCAGGATC- AACAATACAG AAGCCATGCA 722 ATCACAAACC AAAAGATTAC CTGTGATAAC AGCATCAGAT 32775 ||||| || | ||||||||| ||||||| || |||||| || ATCAC-AATC GAAAGATTAC CTGTGATGAC AGCATCTAAT 761 hqPGS_C08HBa0027D09.1+_SGN-E355244+ (32018 32775) ******************************************************************************** EST sequence 62 +strand 661 n (File: SGN-E351414+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 G Predicted gene structure (within gDNA segment 31334 to 33599): Exon 1 32018 32674 ( 657 n); cDNA 4 661 ( 658 n); score: 0.888 MATCH C08HBa0027D09.1+ SGN-E351414+ 0.888 657 0.994 C PGS_C08HBa0027D09.1+_SGN-E351414+ (32018 32674) Alignment (genomic DNA sequence = upper lines): AAACTTCCAT CCTTCTTCTT CACAAACAAA ACGGGAGCAC CCCTTAGGGA TGCACTTGGT 32077 ||||| |||| |||||||||| |||||||||| | ||||||| ||| | || |||||||||| AAACTCCCAT CCTTCTTCTT CACAAACAAA ATCGGAGCAC CCCAAGGAGA TGCACTTGGT 63 CTAATAAAGC CTTTTCCTAA CAATTCTTGA AGTTGG-CCT TTACCTCTCT TAACTCAGCG 32136 ||||| || | |||| | || ||| |||||| |||||| ||| ||| |||||| |||||| || CTAATGAAAC CTTTGCTCAA CAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCTACG 123 GGAGCCATTC TATAAGGGGG TATGGAAATG AGGCAAGTAC CCGGCTCCAG ATCAATGCAA 32196 |||||||||| |||||||||| ||| |||||| ||| || | |||| || || ||| || || GGAGCCATTC TATAAGGGGG TATAGAAATG GGGCGTGTGC CCGGTTCAAG ATCGATACAG 183 AAGTCAATAT ACCTATCCGG TGGCATACCA GGAAGGTCTG GAGGAAACAC ATCCAAAAAC 32256 |||||||||| |||||| || |||||||||| ||||| |||| ||| ||||| |||||||||| AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG CAGGGAACAC ATCCAAAAAC 243 TCACGGACTA TCGAAACCGA CTCAATTGAA GGTACTTGGG TAGTATCATC CCTGAGGTGT 32316 |||| ||||| | ||||||| |||||| ||| |||||||||| |||| ||||| | |||| ||| TCACAGACTA TAAAAACCGA CTCAATCGAA GGTACTTGGG TAGTGTCATC CTTGAGATGT 303 GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG CACGAAGAAA GGAGACGATA 32376 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||| ||| GCCAAGAAAG CTAAACACCC TTTACTAACC ATTTTCTTAG CACGAAGAAA GGAGATGATG 363 CGAACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG GATCTGTCCT AGGCTTGGCT 32436 | ||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CACACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG GATCTGTCCC AGGCTTGGCT 423 AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT TTGGAGAAAG CCAAGTCATA 32496 || ||||| | |||||||||| |||||||||| || ||||| | |||||||| |||||||||| AATGTCACCG TTTTAGCATT ACAATCCAAG ATCGCAAATT GCGGAGAAAG CCAAGTCATA 483 CCCAGAATTA CATCGAAGTC AACCATTTCT AGGATAACCA AGTCTACATG AGTATTGCTC 32556 |||||||||| |||| || || |||||||||| | |||||||| | ||||||| ||| |||||| CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA AATCTACATA AGTGTTGCTC 543 CCCACAAAAG TCAAAAGACA AGACCTATAC ACCTTTTCAA CTATCAAAGA CTCACCCACC 32616 |||||||| ||| | ||| ||||||||| |||||||||| ||| || ||| |||||||||| CCCACAAAGT TCACCAAACA AGACCTATAT ACCTTTTCAA CTACCACAGA CTCACCCACC 603 GGAGTAGAAA CACGAATAGG CATGTCAAGA AAATCACAAT GTAAATCAAG ACCAGTAG 32674 |||||||||| |||||||||| ||| ||||| || ||||||| |||||| || ||| ||| GGAGTAGAAA CACGAATAGG CATATCAAGT AATTCACAAT GTAAATTTAG ACCGTTAG 661 hqPGS_C08HBa0027D09.1+_SGN-E351414+ (32018 32674) ******************************************************************************** EST sequence 254 -strand 659 n (File: SGN-E352117-) 1 CCCAAGGGGA TGCACTTGGC NTAATGAAGC CCTTACNTAA CAACTCTTGA AGTTGGGCCT 61 TTAACTCCCC CAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG GGGTGATCAC 121 CCGGCTCCAG ATCAATGCAA AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGGTCTG 181 CAGGAAACAC ATCCAGAAAC TCACGGACTA TCGAAACTGA CTCAATTGAA GGTACTTGGG 241 TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 301 CACAAAGAAA GGAGATGATA CGAACTGGAG TGGAAGTGTA GTCACCCTCC CACACTAACG 361 CATCTATCTC AGGCTTGGCC AACGTTACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 421 TTGGAGACAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTAT AGGATAACCA 481 AGTCTACATG AGTATTGCTC CCACAAATGT CACAAGACAA GACCTATACA CCTTTTCAAC 541 AATCACAGAC TCACCCACCG GAGTAGAACA CGAATAGGTA TGTCAAGCGA TTCACTATGT 601 AAATTAAGAA CAGTAGCAAA TGAGGAAGAT ACATATGAAA ATGTGGAGGC AGGATCAAA Predicted gene structure (within gDNA segment 30808 to 34135): Exon 1 32058 32717 ( 660 n); cDNA 1 659 ( 659 n); score: 0.917 MATCH C08HBa0027D09.1+ SGN-E352117- 0.917 660 1.002 C PGS_C08HBa0027D09.1+_SGN-E352117- (32058 32717) Alignment (genomic DNA sequence = upper lines): CCCTTAGGGA TGCACTTGGT CTAATAAAGC CTTTTCCTAA CAATTCTTGA AGTT-GGCCT 32116 ||| |||| ||||||||| |||| |||| | || | ||| ||| |||||| |||| ||||| CCCAAGGGGA TGCACTTGGC NTAATGAAGC CCTTACNTAA CAACTCTTGA AGTTGGGCCT 60 TTACCTCTCT TAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG AGGCAAGTAC 32176 ||| ||| | ||||||||| |||||||||| |||||||||| |||||||||| || | || TTAACTCCCC CAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG GGGTGATCAC 120 CCGGCTCCAG ATCAATGCAA AAGTCAATAT ACCTATCCGG TGGCATACCA GGAAGGTCTG 32236 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CCGGCTCCAG ATCAATGCAA AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGGTCTG 180 GAGGAAACAC ATCCAAAAAC TCACGGACTA TCGAAACCGA CTCAATTGAA GGTACTTGGG 32296 ||||||||| ||||| |||| |||||||||| ||||||| || |||||||||| |||||||||| CAGGAAACAC ATCCAGAAAC TCACGGACTA TCGAAACTGA CTCAATTGAA GGTACTTGGG 240 TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 32356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 300 CACGAAGAAA GGAGACGATA CGAACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG 32416 ||| |||||| ||||| |||| ||||| ||| |||||||||| |||||||||| |||||||||| CACAAAGAAA GGAGATGATA CGAACTGGAG TGGAAGTGTA GTCACCCTCC CACACTAACG 360 GATCTGTCCT AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 32476 |||| || ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CATCTATCTC AGGCTTGGCC AACGTTACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 420 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT AGGATAACCA 32536 ||||||| || |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTGGAGACAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTAT AGGATAACCA 480 AGTCTACATG AGTATTGCTC CCCACAAAAG TCAAAAGACA AGACCTATAC ACCTTTTCAA 32596 |||||||||| ||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| AGTCTACATG AGTATTGCT- CCCACAAATG TCACAAGACA AGACCTATAC ACCTTTTCAA 539 CTATCAAAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGA AAATCACAAT 32656 | |||| ||| |||||||||| ||||||| || |||||||||| |||||||| | |||| || CAATCACAGA CTCACCCACC GGAGTAG-AA CACGAATAGG TATGTCAAGC GATTCACTAT 598 GTAAATCAAG ACCAGTAGGA AATGAGGAAG ATACATAAGA AAATGTGGAT CCAGGATCAA 32716 |||||| ||| | |||||| | |||||||||| ||||||| || ||||||||| ||||||||| GTAAATTAAG AACAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAG GCAGGATCAA 658 A 32717 | A 659 hqPGS_C08HBa0027D09.1+_SGN-E352117- (32058 32717) ******************************************************************************** EST sequence 102 +strand 543 n (File: SGN-E355026+) 1 GAACACATCC AAAAATTCTC AAACTACCAA AACTAATTCA ATTGAGGGTA CTTGGATAGT 61 GTCATCCTTG AGATGTGCCA AGAAGGATAG ACAACCCTTA CTAACCATCT TCTGAGCACA 121 AAGAAAGGAG ATAATACGCA CCGGATTGGA AGTGTAGTCA CCCTCCCACA CTAACGGATC 181 TGTCCCAGGC TTGGCTAACG TCACCGTTTT AGCATTACAA TCCAAGATCG CAAAATTGGG 241 AGAAAGCCAA GTCATACCCA GAATTACATC AAAGTCACCC ATTTCTAAAG TAACCAAATC 301 TAGATAAGTG TTGCTCCCCA CGAAATTCAC CAAACAAGAC CTATGTACCT TTTCAACTAT 361 CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG TCAAGTAATT CACAATGCAA 421 TTTTAGACCA TTAGCAAATG ATGAAGATAC ATATGAAAAC GTGGAGCCAG GGTCAAATAA 481 TACAGATGCC ATGCAATCAC AAACCAAGAG ATTACCTGTG ATAACAGCAT CAGACGCCTC 541 TGC Predicted gene structure (within gDNA segment 30390 to 34635): Exon 1 32242 32783 ( 542 n); cDNA 2 543 ( 542 n); score: 0.876 MATCH C08HBa0027D09.1+ SGN-E355026+ 0.876 542 0.998 C PGS_C08HBa0027D09.1+_SGN-E355026+ (32242 32783) Alignment (genomic DNA sequence = upper lines): AACACATCCA AAAACTCACG GACTATCGAA ACCGACTCAA TTGAAGGTAC TTGGGTAGTA 32301 |||||||||| |||| || | |||| | || || | |||| |||| ||||| |||| |||| AACACATCCA AAAATTCTCA AACTACCAAA ACTAATTCAA TTGAGGGTAC TTGGATAGTG 61 TCATCCCTGA GGTGTGCCAA GAAAGCTAAA CACCCTTTAC TAACCATTCT CTTAGCACGA 32361 |||||| ||| | |||||||| ||| | || | || || |||| ||||||| | || ||||| | TCATCCTTGA GATGTGCCAA GAAGGATAGA CAACCCTTAC TAACCATCTT CTGAGCACAA 121 AGAAAGGAGA CGATACGAAC CGGATTGGAA GTGTAGTCAC CCTCCCACAC TAACGGATCT 32421 |||||||||| ||||| || |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGGAGA TAATACGCAC CGGATTGGAA GTGTAGTCAC CCTCCCACAC TAACGGATCT 181 GTCCTAGGCT TGGCTAACGT CACAGTTTTA GCATTACAAT CCAAGATTGC AAAATTTGGA 32481 |||| ||||| |||||||||| ||| |||||| |||||||||| ||||||| || |||||| ||| GTCCCAGGCT TGGCTAACGT CACCGTTTTA GCATTACAAT CCAAGATCGC AAAATTGGGA 241 GAAAGCCAAG TCATACCCAG AATTACATCG AAGTCAACCA TTTCTAGGAT AACCAAGTCT 32541 |||||||||| |||||||||| ||||||||| |||||| ||| |||||| | |||||| ||| GAAAGCCAAG TCATACCCAG AATTACATCA AAGTCACCCA TTTCTAAAGT AACCAAATCT 301 ACATGAGTAT TGCTCCCCAC AAAAGTCAAA AGACAAGACC TATACACCTT TTCAACTATC 32601 | || ||| | |||||||||| ||| ||| | |||||||| ||| ||||| |||||||||| AGATAAGTGT TGCTCCCCAC GAAATTCACC AAACAAGACC TATGTACCTT TTCAACTATC 361 AAAGACTCAC CCACCGGAGT AGAAACACGA ATAGGCATGT CAAGAAAATC ACAATGTAAA 32661 | |||||||| |||||||||| |||||||||| |||||||||| |||| || || |||||| || ACAGACTCAC CCACCGGAGT AGAAACACGA ATAGGCATGT CAAGTAATTC ACAATGCAAT 421 TCAAGACCAG TAGGAAATGA GGAAGATACA TAAGAAAATG TGGATCCAGG ATCAAATAAT 32721 | |||||| ||| |||||| ||||||||| || ||||| | |||| ||||| ||||||||| TTTAGACCAT TAGCAAATGA TGAAGATACA TATGAAAACG TGGAGCCAGG GTCAAATAAT 481 ACAGAAGCGA TGTAATCACA AACCAAAAGA TTACCTGTGA TAACAGCATC AGATGTCTCC 32781 ||||| || | || ||||||| |||||| ||| |||||||||| |||||||||| ||| | ||| ACAGATGCCA TGCAATCACA AACCAAGAGA TTACCTGTGA TAACAGCATC AGACGCCTCT 541 GC 32783 || GC 543 hqPGS_C08HBa0027D09.1+_SGN-E355026+ (32242 32783) ******************************************************************************** EST sequence 21 +strand 560 n (File: SGN-E242765+) 1 TGGTTCTAGC ATTAGGACAT CATAGCTCAT TTGATTATTT CTCATCTCAT AATTAGTATT 61 TAGTATTCCC TCAATTTAAT AATTTCATTA AAGTGTTCAT AGAGACTTAT CTCTTCATTA 121 GCTTTACACT ATAAAAGGTG AGTAAGTGTT GGTAATATTT ACTTAGGCTT ATTTGCTATT 181 GAAACCGACT CAATCGAAGG TACTTGGGTA GTGTCATCAT TGAGATGTGC TAAGAAAGAT 241 AAACACCTTT TACTAATCAT TTTCTTAGCA AGAAGAAAGG AGACGATGCG GACCGGATTG 301 GAAGTGTAGT CACCCTCTCA CACTAACGGG TCTATCCCAG GCTTGGCTAA CGTCACCGTT 361 TTAGCATTAC AATCCAAGAT TGCAAATTGC GGAGAAAGCA AAGTCATACC CAGAATCACA 421 TCAAAATCAT CCATTGCCAA GATAACCAAA TCTACATAAG TGTTGCTCCC CACAAAGTTT 481 ACGACACAAG ACCTATATAC TTTTTCAACT ACCTCAGACT CACCCACCGG AGTAGAAACA 541 CGAATAGGCA TATCAAGAAA Predicted gene structure (within gDNA segment 28447 to 33339): Exon 1 32265 32648 ( 384 n); cDNA 177 560 ( 384 n); score: 0.883 MATCH C08HBa0027D09.1+ SGN-E242765+ 0.883 384 0.686 C PGS_C08HBa0027D09.1+_SGN-E242765+ (32265 32648) Alignment (genomic DNA sequence = upper lines): TATCGAAACC GACTCAATTG AAGGTACTTG GGTAGTATCA TCCCTGAGGT GTGCCAAGAA 32324 ||| |||||| |||||||| | |||||||||| |||||| ||| || |||| | |||| ||||| TATTGAAACC GACTCAATCG AAGGTACTTG GGTAGTGTCA TCATTGAGAT GTGCTAAGAA 236 AGCTAAACAC CCTTTACTAA CCATTCTCTT AGCACGAAGA AAGGAGACGA TACGAACCGG 32384 || ||||||| | |||||||| |||| |||| |||| ||||| |||||||||| | || ||||| AGATAAACAC CTTTTACTAA TCATTTTCTT AGCAAGAAGA AAGGAGACGA TGCGGACCGG 296 ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC CTAGGCTTGG CTAACGTCAC 32444 |||||||||| |||||||||| | |||||||| ||| ||| || | |||||||| |||||||||| ATTGGAAGTG TAGTCACCCT CTCACACTAA CGGGTCTATC CCAGGCTTGG CTAACGTCAC 356 AGTTTTAGCA TTACAATCCA AGATTGCAAA ATTTGGAGAA AGCCAAGTCA TACCCAGAAT 32504 ||||||||| |||||||||| |||||||||| | |||||| ||| |||||| |||||||||| CGTTTTAGCA TTACAATCCA AGATTGCAAA TTGCGGAGAA AGCAAAGTCA TACCCAGAAT 416 TACATCGAAG TCAACCATTT CTAGGATAAC CAAGTCTACA TGAGTATTGC TCCCCACAAA 32564 ||||| || ||| ||||| | | |||||| ||| |||||| | ||| |||| |||||||||| CACATCAAAA TCATCCATTG CCAAGATAAC CAAATCTACA TAAGTGTTGC TCCCCACAAA 476 AGTCAAAAGA CAAGACCTAT ACACCTTTTC AACTATCAAA GACTCACCCA CCGGAGTAGA 32624 | | | | |||||||||| | || ||||| ||||| | | |||||||||| |||||||||| GTTTACGACA CAAGACCTAT ATACTTTTTC AACTACCTCA GACTCACCCA CCGGAGTAGA 536 AACACGAATA GGCATGTCAA GAAA 32648 |||||||||| ||||| |||| |||| AACACGAATA GGCATATCAA GAAA 560 hqPGS_C08HBa0027D09.1+_SGN-E242765+ (32265 32648) ******************************************************************************** EST sequence 49 +strand 331 n (File: SGN-E352716+) 1 GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 61 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA 121 AGTCTACATA AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 181 CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCATAAT 241 TTAATTTAAG ACCAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAT CCAGGGTCAA 301 ATAATACAAA AGCCATGCAA TCACAAAAAA A Predicted gene structure (within gDNA segment 31727 to 33681): Exon 1 32417 32747 ( 331 n); cDNA 1 331 ( 331 n); score: 0.924 MATCH C08HBa0027D09.1+ SGN-E352716+ 0.924 331 1.000 C PGS_C08HBa0027D09.1+_SGN-E352716+ (32417 32747) Alignment (genomic DNA sequence = upper lines): GATCTGTCCT AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 32476 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 60 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT AGGATAACCA 32536 |||||||||| |||||||||| |||||||||| |||| || || |||||||||| | |||||||| TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA 120 AGTCTACATG AGTATTGCTC CCCACAAAAG TCAAAAGACA AGACCTATAC ACCTTTTCAA 32596 ||||||||| |||||||||| |||||||||| ||| |||| ||||||||| || ||||||| AGTCTACATA AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 180 CTATCAAAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGA AAATCACAAT 32656 |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| || ||| ||| CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCATAAT 240 GTAAATCAAG ACCAGTAGGA AATGAGGAAG ATACATAAGA AAATGTGGAT CCAGGATCAA 32716 ||| | ||| |||||||| | |||||||||| ||||||| || |||||||||| ||||| |||| TTAATTTAAG ACCAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAT CCAGGGTCAA 300 ATAATACAGA AGCGATGTAA TCACAAACCA A 32747 |||||||| | ||| ||| || ||||||| | | ATAATACAAA AGCCATGCAA TCACAAAAAA A 331 hqPGS_C08HBa0027D09.1+_SGN-E352716+ (32417 32747) ******************************************************************************** EST sequence 164 -strand 737 n (File: SGN-E578078-) 1 GCAATCGCAA ATCCTTCAGG AATTTTCATG TATATCTCAT ATTTAAATGA TCCATAAAGG 61 TAGGTTGTAA CCACATCCAT CAAATGCATT TCAAGTTGCT CATGGACTGT GAAACTAATG 121 AGATAAACCA ATGTTATTGC ATCCATAACG GGTGAGTATG TCTCTTCATA TTCGACGCCA 181 GGCCTTTGAG AAAATATTTT TTGTTACAAC CCCGGTAGGT GACTCCATTG TTGCTAGAAG 241 AGTCTTTAGG AGTTATCCTA TATATTTCCC CAATAGAGTT ACTTGGGTGG ATTTGGTGGA 301 ATTCGATATG GTCGATTTTT ATTTTATCTT GGGAATGGAT TGGTTGCATG CTTGTTATGC 361 TTCCATAGAC TGTCGAACAA GAGTTGTTAA ATTCAACTTT CCTAATGAAC CTGTCTTAGA 421 GTGGAATGGC AGTAATTTAA TTCCTAAAGG TCATATCATC TCTTGTTTAA AATATTGCAA 481 AATAATCTCA AAAGTGTGAA TTTACCATAT TGTAAGAGTC AAAGATCTTG AGTCCGATAT 541 TCCTCCAATT GAGTCAATCA CCATAGTGAG AGAATTTTCG AAAATATCTT CCTCACATTG 601 ATGATTTGTT CGATCAGTTA CAAGGTGCTT GTACCTTCTC AAAAATCGAC TTGAGATCTG 661 GTTATCATCA ATTGAAAATA CGAGCAGCAG ATGTGCCCAA GACTGCTTTT CGGACCAGGT 721 ATGAGCATTA TGAGTTC Predicted gene structure (within gDNA segment 31542 to 40214): Exon 1 33232 33252 ( 21 n); cDNA 441 460 ( 20 n); score: 0.714 Intron 1 33253 34244 ( 992 n); Pd: 0.643 (s: 0), Pa: 0.000 (s: 0) Exon 2 34245 34271 ( 27 n); cDNA 461 485 ( 25 n); score: 0.704 Intron 2 34272 37941 (3670 n); Pd: 0.598 (s: 0), Pa: 0.697 (s: 0) Exon 3 37942 37974 ( 33 n); cDNA 486 518 ( 33 n); score: 0.682 Intron 3 37975 38976 (1002 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 38977 39041 ( 65 n); cDNA 519 582 ( 64 n); score: 0.631 Intron 4 39042 39323 ( 282 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0.86) Exon 5 39324 39479 ( 156 n); cDNA 583 737 ( 155 n); score: 0.897 MATCH C08HBa0027D09.1+ SGN-E578078- 0.819 302 0.410 C PGS_C08HBa0027D09.1+_SGN-E578078- (33232 33252,34245 34271,37942 37974,38977 39041,39324 39479) Alignment (genomic DNA sequence = upper lines): TTTTTAAAGG TCAATGCCAT GGTGAAGTCT TCTGGATTCA CTCCCTCCAC TTCTATCACA 33291 || |||||| || || ||| TTCCTAAAGG TC-ATATCAT C......... .......... .......... .......... 460 ATATCTACCA CTTCCTGAAA GGATTTTGCT GTAGCAGCTA CCTGTAAGGC TGAAATCCGC 33351 .......... .......... .......... .......... .......... .......... 460 AAATTTGACC TCAACCCCTT CACAAAATGG CGAATCCGCT CTTGTGGACT GAAGCAAAGC 33411 .......... .......... .......... .......... .......... .......... 460 TGGGTGGCAT ATCTGGATAG TGCACGAAAC CTAGCCTCAT AAGCAGTAAC TGACATCCTG 33471 .......... .......... .......... .......... .......... .......... 460 CCTTGCTCTA GGCTTAGAAA CTAATCTCTC CTCCTATCCC TCAAAGTACG GGGTATATAC 33531 .......... .......... .......... .......... .......... .......... 460 TTCTCCATAA ATAAACTAGA GAATGATGCC CAAGTCATGG GTGGTGCCTG TGCTGGTTGA 33591 .......... .......... .......... .......... .......... .......... 460 CACTCAACAT ATGACCGCCA CCACATTTTG GCATTTCCCT GAAACTGATA GGTTACGAAC 33651 .......... .......... .......... .......... .......... .......... 460 TCAACACCGA ATGGTTCCAC TATGCCCATC TTATGTAGCA ACTCATGACA ATCAACCACA 33711 .......... .......... .......... .......... .......... .......... 460 AAATCATAGG CATCCTCAGA TTCAACACCC TTGAAGACTG GAGGTTTCAA TTTCAAGAAC 33771 .......... .......... .......... .......... .......... .......... 460 TTACTGAAAA GTTCATGCTG ATCACTTTTC ATTATAGGCC CTGTAGTCAA CCGAGGAAAC 33831 .......... .......... .......... .......... .......... .......... 460 GTTCCTATTT CCATTGAAGC ATCCATGCGG GGATCCCCAG CAGCGGCACG TCGTACTCCC 33891 .......... .......... .......... .......... .......... .......... 460 GTAACCTGGG GTGCTGGTGC AGAAAACACT GGAGGTGTCT GACCTTGATC AGATAACCCA 33951 .......... .......... .......... .......... .......... .......... 460 CTAAGATAAG CAAGAACCTG ATTAATCATC TCTGGGGTAG GTTGGGGTGG TAACTCCTCA 34011 .......... .......... .......... .......... .......... .......... 460 CTCCGCACTT GTTCATTCTC CCCTTCCTCA CCCTCTCTCA AAACTTCCTC AGTCGGCTGA 34071 .......... .......... .......... .......... .......... .......... 460 GGAGTCACCG CCCTAGTACT AGATGGGCCA GGTGCTTGTC CTCTTCCTCT AGAGGACGTC 34131 .......... .......... .......... .......... .......... .......... 460 CTCCCGCGAC CTCTACCACG GCCTCTTGCA ACTGCTCCTC TTCGAGCTAC AGCCCCAGTG 34191 .......... .......... .......... .......... .......... .......... 460 GGTGGCTCAG ACACATCTTG TCTTGCCGGT GTTGGCGTTG GCGCATTTGT TGCTCTAGTT 34251 ||| ||| .......... .......... .......... .......... .......... ...TCTTGTT 467 CTAACCATCT GCGAAATAGA GTGAGGATGG TCAGATACAT ATTTGTATCA CCTAGATACC 34311 || || | || ||||| | TAAAATAT-T GCAAAATA-A .......... .......... .......... .......... 485 AATTGGATCC AAGTAATAGC ACGAAAGAAA GAAAGAATGA AATTTTCCTA AAGTCTTATA 34371 .......... .......... .......... .......... .......... .......... 485 GCCTCTCAAA GAAAAGTAAA GGCGTCCCCC TACCGTTCCT TAAGACTCTA CTCGACTCGT 34431 .......... .......... .......... .......... .......... .......... 485 TCTTGTGTGA TGAGACCAAT GAACCTAATG CTCTGATACC AAGTTTGTCA GGACCCAAAA 34491 .......... .......... .......... .......... .......... .......... 485 CGAGCTGCGA GTGGCACCCA CATTTATCCT TTTATGTGAG CGAACCAATC AATCTAAACC 34551 .......... .......... .......... .......... .......... .......... 485 CAAAATCATT TACCAATAAT TGAACCATAA TAAAAAAAAT ACAATGCGGA AGACTTAAAA 34611 .......... .......... .......... .......... .......... .......... 485 CTCATTAATG AAAATAGATT AATAACTTCT AAAAACTCGA TACTTATTAT TCCCAAAATC 34671 .......... .......... .......... .......... .......... .......... 485 TGGAAGTCAT CACCACAAGA ACATCTATCC TCAAATTACT AAATCTAAGA GTATCTAAGA 34731 .......... .......... .......... .......... .......... .......... 485 AGCTAAAATA AATAAACAGC TAGTCCGTGC CAGAACTTCA AGGAATCAAG ACGTGAAGAA 34791 .......... .......... .......... .......... .......... .......... 485 GAAGATCCAG TCCAAGCTAG AAACAATAGC TCACCCTGAA TTCTGGTGTG ATGAAGACTG 34851 .......... .......... .......... .......... .......... .......... 485 ACTAGAGTTG AGGACGAGTT GAAGACGATG GCACGCTTAC TGCACTCCAC AAATAACAAG 34911 .......... .......... .......... .......... .......... .......... 485 AAAAACAAAT ACAAGTAGGG GTGTAACGAC TTGTTTAGTC GTTTTGAGCA GCAGATTTTA 34971 .......... .......... .......... .......... .......... .......... 485 TTCTGGAAAA ACTGTCTTGG TCGACGGATC CCACGACGGA CCGTCATGGG CATGACGGAC 35031 .......... .......... .......... .......... .......... .......... 485 CGTCGAGGGG TTCTCGTTCC AAAACACTTA GAATTTCTGA AATTTGGGTA TTGAAATCGA 35091 .......... .......... .......... .......... .......... .......... 485 CTCTCTGAAC TTCGTGACGA CATGGCAGGA CGGACCATCG TGGGCACGAT GGACCGTCAC 35151 .......... .......... .......... .......... .......... .......... 485 AGACCTTTCA AAGAATTGAG GCTCTGAACT CTGTGACGGA AGCAGCAGGA CGGACCGTTT 35211 .......... .......... .......... .......... .......... .......... 485 CAGGCATGAC GGGCCGTCAC AGACTGTGTA ATCCCAGGCT CCATCGGATT TCTGTTAAAT 35271 .......... .......... .......... .......... .......... .......... 485 ATTTTAAGGG ATGTTTTGGA CTGTTCATGC TATAATTATA AATTTAGTGG GTTAATGTTA 35331 .......... .......... .......... .......... .......... .......... 485 ATAATTTAAC TACTTGAGTG TTAAAAGAGA TAACCTTGAA TTAATTAATG GGTTAATTCA 35391 .......... .......... .......... .......... .......... .......... 485 TCATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT TGAATAAGAA 35451 .......... .......... .......... .......... .......... .......... 485 AAATAGAAAG AACAGAGGAG AAAGAGAGAA ACGATCGAGA GAGGGGGAAA ACGAAGAAGA 35511 .......... .......... .......... .......... .......... .......... 485 TAGCCAAGAT TTTGAGGAAT TGCTTGCTTG ATCACAATTC TTTGGTGGAG GTAGGTTATG 35571 .......... .......... .......... .......... .......... .......... 485 GTTTTTATGC TATTCGTAGT AAACTCTTAA TAGCGAATGA TATGTATTGG GTAGTGTTGT 35631 .......... .......... .......... .......... .......... .......... 485 AAACCCTTCT ATATGCTTAA TTGTGTGCTT GCATGATGTG TTTATATAAT TGTGATAAAA 35691 .......... .......... .......... .......... .......... .......... 485 TAAGCATGAT GAAGCTATTG AATCCTAAAT CTTGAAAACC TCTTTGTTAA TGATGATGCC 35751 .......... .......... .......... .......... .......... .......... 485 TTAGTATGAA AGAAGGCTTG ATGAACTAAA GTAATGAGAT TGATGATGCC TTGGTATAAG 35811 .......... .......... .......... .......... .......... .......... 485 AGAAGTCTTG ATGAACTAAA GTAATGAGAT TGATGATGCC TTGGTGTAAA AGAAGGCTTG 35871 .......... .......... .......... .......... .......... .......... 485 ATGAATTAAC AGAATGAGAC TAGTGGAGCG GGTGTCACGA ATCGACACGT AAAATTAGGG 35931 .......... .......... .......... .......... .......... .......... 485 GATCGGGTGT CACGAAACGA CACGTAGAAT TAGGGGATCG GGTGTCACGA ACCGACACGT 35991 .......... .......... .......... .......... .......... .......... 485 AGAATTAGGG GATCAGGTGT CACGAACCAA CACGTAGAAT TAGGGGATCG GGTGTCACGG 36051 .......... .......... .......... .......... .......... .......... 485 ACCGACACGT AGAATTAGGG GATCGGGTGT CATGAACCGA CACGTAGAAT TAGGGGATCG 36111 .......... .......... .......... .......... .......... .......... 485 GAGTGTCACG TTCTGACATA TAGTAGTAGG GGAGCGGAGT GTCACGTACC GACACAAGAG 36171 .......... .......... .......... .......... .......... .......... 485 GAATAAAGAT AATGAGTCTT GAAATTATGT TAACAAATTC GAATGAAAAG AACCTATATC 36231 .......... .......... .......... .......... .......... .......... 485 CCAAATGAGT ATGGTGTGGA GACTGGAGTT CTCATAGGTG TGTTTGATGT GGTTACACAT 36291 .......... .......... .......... .......... .......... .......... 485 GATTTGTGAA CTTGTTGCTT TCACATGTTG AGTATTGTAG TTGATTTTAT GATATTATCT 36351 .......... .......... .......... .......... .......... .......... 485 GATATATACT ATTTTCTATT TTGAGTTGGC CGATGATATC TACTAAGTAC CCGTGTTTTG 36411 .......... .......... .......... .......... .......... .......... 485 TACTGACCCC TACTTGTATG TTTTCTTTTT GTTAATTGTG GAGTGCAGCA AACGTACCGT 36471 .......... .......... .......... .......... .......... .......... 485 CATCTTCAAC TCAACCGAAA CTCTAGCCAG TCTTCATTAC ACCGGATTTC AGGGTGAGCT 36531 .......... .......... .......... .......... .......... .......... 485 AATGCTTCTA GCTTGGACTG GATCTTCTTC TTCACGTCTT GATGCCTTGA ACTTCCGGCA 36591 .......... .......... .......... .......... .......... .......... 485 TGGACTAGCT TTTTTACTTA TTTTAGCTTC TTCGATACTC TTAGATTAGT AATGTGAGGA 36651 .......... .......... .......... .......... .......... .......... 485 TAGATGTTCT TGTGATGATG ACTTCCAGAT TTTGGGGATA TTAATTGATA AGTTTTAGAA 36711 .......... .......... .......... .......... .......... .......... 485 GTTGATTATT GATTTCATTA ATGAGTTTAA GTCTTCCGCA TTATATTATG TTATTATTGG 36771 .......... .......... .......... .......... .......... .......... 485 TAAACGATTG GGGTTTAGAT TGGTTGGTTA GCTCACATAG GAGGATAAAT GTGGGTGCCA 36831 .......... .......... .......... .......... .......... .......... 485 CTCACAGCTC GATTTGGGTC GTGACAAACT TGGTATCAGA GCATTAGGTT CGTTGGTCTC 36891 .......... .......... .......... .......... .......... .......... 485 ATCACACAAG AATGAGTCTA GTAGAGTCTT AAGGAACGGT AGGGGGACGC CTTTACTTTT 36951 .......... .......... .......... .......... .......... .......... 485 CTTTGAGAGC CTATAAGACT TTAGGAAAAC TCCATTCTTT CTTTTCTTCT TTCGTGCTAT 37011 .......... .......... .......... .......... .......... .......... 485 TACTTGGATC CAATTGGTAT CTAGGTGATA AAAATTGGTA TCTGGCCATC TTCATTCTAT 37071 .......... .......... .......... .......... .......... .......... 485 TTCGCAGATG GTTAGAACTA GAGCAACAAC GAATGCGCCA ACACCAACAT TGGCAAGACA 37131 .......... .......... .......... .......... .......... .......... 485 AGAAGCGTCT GAGCCAGCCA CTGGGGCTGT AGCTCGAAGA GGAGTAGTGG CAAGAGGCCG 37191 .......... .......... .......... .......... .......... .......... 485 TGGAAGGGGT CGCGGGAGGA CGTCCTCTAG AGGAATAGGA CAAGCACCTA GCCCATCTGG 37251 .......... .......... .......... .......... .......... .......... 485 TACTAGGGCG GTGACTCCTC CACCGGCTGA AGAAGTAGTA AGAGAGGGGG AGGATGGGGA 37311 .......... .......... .......... .......... .......... .......... 485 AAATGAGCAA GTACAGAATG AGGAATTACC ACCCCAACCT ACCCCAGAGA TGATCAATCA 37371 .......... .......... .......... .......... .......... .......... 485 GGTTCTTGCT TATCTTAGTG GGTTATCTGA TCAAGGCCAG ACACCTCCAG TGTTTTCTGC 37431 .......... .......... .......... .......... .......... .......... 485 ACCAGCACCT CAGGTTCCGG AGGTATAACA TGCAGCTACT GTAGCTCCTC GCATGGATGC 37491 .......... .......... .......... .......... .......... .......... 485 CTCATTGGAA ATAGGCACGT TTCCTCGTCT GACTACAGGA CCTATAATGA TAAATGATCA 37551 .......... .......... .......... .......... .......... .......... 485 GCATGTACTT TTCAGTAAGT TCTTGAAATT AAAACCTCCA ATCTTCAAGG GTGCTGAATC 37611 .......... .......... .......... .......... .......... .......... 485 TGAGGATGCC TACGATTTTC TGGTTGACTG TCATGAGCTA CTACACAAGA TGGGAATAGT 37671 .......... .......... .......... .......... .......... .......... 485 AAAACGGTTT GGTGTTGAGT TTGTGACTTA TCAGTTTCAA GGAAACGCCA AAATGTGGTG 37731 .......... .......... .......... .......... .......... .......... 485 GCGGTCACAT GTTGACTGTC AACCAACAGA GGCACCACCT ATGACTTGGG CATCATTCTC 37791 .......... .......... .......... .......... .......... .......... 485 TAGCTTGTTT ATGGAGAAGT ATATCCCCCG GACTTTGAGG GATAGGAAAA GAGATGAGTT 37851 .......... .......... .......... .......... .......... .......... 485 CTTGAGCCTA GAGCCAGGTA GGATGTCGGT TACTGCATAT GAGGCTAAGT TTCGTGCATT 37911 .......... .......... .......... .......... .......... .......... 485 ATCTAGGTAT GCCACCCAAC TTTGTTTCAG TC-CACAAGA GCGGATTCAC CATTTTGTGA 37970 || || ||| | | ||| || ||| |||| | .......... .......... .......... TCTCAAAAGT GTGAATTTAC CATATTGT-A 514 AGGGGTTGAG GTCAGAACTG CGGATTTCAG CCTTACAGGT AGCGGCTACG GCAAAATCCT 38030 || | AGAG...... .......... .......... .......... .......... .......... 518 TTCAAGAAGT GGTAGACTTC GTGATAAAGG TGGAAGGAGT GAAGCCAGAT GACTTCACCA 38090 .......... .......... .......... .......... .......... .......... 518 TGGCATCGAC ATCAAAAAGG TTTCAAAAGG GAGGTGAGTT TAATTGTTCT TACTCTAGAG 38150 .......... .......... .......... .......... .......... .......... 518 GACAGGGTTC AGAAGGTTAC TCAGTCCGAC CAATTCAGTC TTCACTACAG ACTGTAGTTG 38210 .......... .......... .......... .......... .......... .......... 518 GGGGTCCACC TCAGACCGGT CAACACTTCT ATGAGAGACC TATGCTTGAC TCCAGGGAGT 38270 .......... .......... .......... .......... .......... .......... 518 GTTATGGATG TGGGGAGACT GGACATATTA GGAGGAATTG TCCAAAACAG AGTTATATAC 38330 .......... .......... .......... .......... .......... .......... 518 CCCCAATAGC TAGAGGTAGA GGTGGTCATG GTAGAGGCCG TTATTTTGGA GAACGCGGTG 38390 .......... .......... .......... .......... .......... .......... 518 GCCGAGGTAA TGGTGGTCAC TAAAACGGCT GGGGTAACGG GCAAACTGGA GCCACTACAG 38450 .......... .......... .......... .......... .......... .......... 518 CACAACATGG TAGGGGCAAC GGGCAGACAG GTGATAGGGC CCATTGTTAT GCTTTCCCTG 38510 .......... .......... .......... .......... .......... .......... 518 GGAGATCTGA AGCGGAGACA TCTGATGCTG TCATCACAGG TAATCTTTTG GTTTGTGATT 38570 .......... .......... .......... .......... .......... .......... 518 GCATGGCTTC TGTATTTTTT GATCATGGAT CCACATTTTC TTATGTATCT TCCTCATTTG 38630 .......... .......... .......... .......... .......... .......... 518 CTAATGGTCT TAATTTACAT TGTGAACTGC TTGACATGCC TATTCGTGTT TCTACTCCGG 38690 .......... .......... .......... .......... .......... .......... 518 TGGGTGAGTC TGTGATAGTT GAAAAAGTAT ATAGGTCTGG GGAGCAATAC TCATGTAGAC 38750 .......... .......... .......... .......... .......... .......... 518 TTGGTTATCT CAGAAATGGT TGATTTTGAT GTAATTCTGG GTTTGACTTG GCTTTCTCTG 38810 .......... .......... .......... .......... .......... .......... 518 AATTTTGCGA TCTTGGATTG TAATGCTAAA ACTGTGACGT TAGCCAAGCC TGGGACAGAT 38870 .......... .......... .......... .......... .......... .......... 518 CCGTTAGCGT GGGAGGGCGA CTACACTTCC ACTCCGGTTC GTATCATCTC CGTTCTTCGT 38930 .......... .......... .......... .......... .......... .......... 518 GCTAAGAGAA TGGTAAGTAA GGGGTGTTTA GATTTCTTGT CACATCTCAG GGATGATACT 38990 ||| ||| | .......... .......... .......... .......... ......TCAA AGATCTTGAG 532 ACCCAAGTAC CTTCAATTGA GTCAGTTTCG ATAGTCTGTG AGTTTCTAGA TGTGTTTCCC 39050 || | | | || ||||||| |||| | | ||||| | | | ||| | || TCCGATATTC CTCCAATTGA GTCAATCACC ATAGTGAGAG AATTT-TCGA A......... 582 ACAGATCTTC CTGGTATGCC ACCGGATAGA GATATTGACT TCTGCATCGA TCTTGAACCG 39110 .......... .......... .......... .......... .......... .......... 582 GGTACTCGCC CCGTTTCTAT ACCCCCTTAT AGAATGGCTC CCGCGGAGTT GAGCGAGTTA 39170 .......... .......... .......... .......... .......... .......... 582 AAGGCTCAAC TTCAAGAATT GTTAGGAAAT GGCTTCATTA GACAAAGTGC ATATCCTTGG 39230 .......... .......... .......... .......... .......... .......... 582 GGTGCTCTTG TTTTGTTTGT GAAGAAGAAC GATGGAAGCT TTCGGATGTC CATAGACTAC 39290 .......... .......... .......... .......... .......... .......... 582 AAATAACTAA ATAAGGTAAC GGTTAAGAAC AAGTATCCTC TTCCTCGTAT CGATGATTTG 39350 || || |||||| || ||||||||| .......... .......... .......... ...AAT-ATC TTCCTCACAT TGATGATTTG 608 TTCGATCAGT TACAAGGTGC TTATACTTTC TCAAAAATTG ACTTGAGATC TGGTTACCAT 39410 |||||||||| |||||||||| || ||| ||| |||||||| | |||||||||| |||||| ||| TTCGATCAGT TACAAGGTGC TTGTACCTTC TCAAAAATCG ACTTGAGATC TGGTTATCAT 668 CAATTGAAAA TACGGGCAAC GTATGTGCCC AAGACTGCTT TTCGGACCAG GTATAGGCAT 39470 |||||||||| |||| ||| | |||||||| |||||||||| |||||||||| |||| |||| CAATTGAAAA TACGAGCAGC AGATGTGCCC AAGACTGCTT TTCGGACCAG GTATGAGCAT 728 TATGAGTTC 39479 ||||||||| TATGAGTTC 737 hqPGS_C08HBa0027D09.1+_SGN-E578078- (33232 33252,34245 34271,37942 37974,38977 39041,39324 39479) ******************************************************************************** EST sequence 106 +strand 713 n (File: SGN-E349404+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAGG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATGC GGGGAGCCAT AGTAGCCGCA TGTCGTATCT CTG Predicted gene structure (within gDNA segment 31203 to 35438): Exon 1 33186 33886 ( 701 n); cDNA 7 707 ( 701 n); score: 0.826 MATCH C08HBa0027D09.1+ SGN-E349404+ 0.826 701 0.983 C PGS_C08HBa0027D09.1+_SGN-E349404+ (33186 33886) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTG GAGTAAGAAC CATTAAACTC ACCTCCCTTA CGAAACTTTT TAAAGGTCAA 33245 ||||||||| || ||||||| ||||| |||| |||||| | | |||| | | | | ||| | CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCTTCTG GATTCACTCC CTCCACTTCT ATCACAATAT CTACCACTTC 33305 || | ||||| ||||| || | | |||||||| ||||| || ||||||| | ||||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 CTGAAAGGAT TTTGCTGTAG CAGCTACCTG TAAGGCTGAA ATCCGCAAAT TTGACCTCAA 33365 ||||||||| ||||||| | | |||| ||| |||||||||| |||||||| | ||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 CCCCTTCACA AAATGGCGAA TCCGCTCTTG TGGACTGAAG CAAAGCTGGG TGGCATATCT 33425 |||||||||| ||| |||| | |||| ||||| |||||| || || || |||| |||| ||||| CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 GGATAGTGCA CGAAACCTAG CCTCATAAGC AGTAACTGAC ATCCTGCCTT GCTCTAGGCT 33485 ||||||||| ||||| ||| ||||||| || | |||| | ||||| || | | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 TAGAAACTAA TCTCTCCTCC TATCCCTCAA AGTACGGGGT ATATACTTCT CCATAAATAA 33545 | |||| | || || ||| |||| ||||| ||| | || ||||| |||| |||| || || CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 ACTAGAGAAT GATGCCCAAG TCATGGGTGG TGCCTGTGCT GGTTGACACT CAACATATGA 33605 |||||||||| ||| |||||| |||| ||||| ||||| || | |||||||||| |||||| ||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCAT TTCCCTGAAA CTGATAGGTT ACGAACTCAA CACCGAATGG 33665 ||||||||| || ||||| | | || || || ||||||| | |||||||| | | || || ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCCACTATG CCCATCTTAT GTAGCAACTC ATGACAATCA ACCACAAAAT CATAGGCATC 33725 || ||||| ||||| || | |||| | ||| |||||||||| |||| ||||| |||| ||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 546 CTCAGATTCA ACACCCTTGA AGACTGGAGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 33785 |||||||| ||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAGTTC 606 ATGCTGATCA CTTTTCATTA TAGGCCCTGT AGTCAACCGA GGAAACGTTC CTATTTCCAT 33845 ||| ||||| || |||| | ||||||| || ||||| || ||||| || | ||||| ||| ATGTTGATCG TTTGTCATAA TAGGCCCAGT AGTCAGACGT GGAAATGTGC CTATTCCCAA 666 TGAAGCATCC ATGCGGGGAT CCCCAGCAGC GGCACGTCGT A 33886 || ||||| ||||||||| || || ||| ||| ||||| | TGGTGCATCT ATGCGGGGAG CCATAGTAGC CGCATGTCGT A 707 hqPGS_C08HBa0027D09.1+_SGN-E349404+ (33186 33886) ******************************************************************************** EST sequence 69 +strand 679 n (File: SGN-E351625+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAAG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATG Predicted gene structure (within gDNA segment 31203 to 35098): Exon 1 33186 33858 ( 673 n); cDNA 7 679 ( 673 n); score: 0.826 MATCH C08HBa0027D09.1+ SGN-E351625+ 0.826 673 0.991 C PGS_C08HBa0027D09.1+_SGN-E351625+ (33186 33858) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTG GAGTAAGAAC CATTAAACTC ACCTCCCTTA CGAAACTTTT TAAAGGTCAA 33245 ||||||||| || ||||||| ||||| |||| |||||| | | |||| | | | | ||| | CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCTTCTG GATTCACTCC CTCCACTTCT ATCACAATAT CTACCACTTC 33305 || | ||||| ||||| || | | |||||||| ||||| || ||||||| | ||||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 CTGAAAGGAT TTTGCTGTAG CAGCTACCTG TAAGGCTGAA ATCCGCAAAT TTGACCTCAA 33365 ||||||||| ||||||| | | |||| ||| |||||||||| |||||||| | ||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 CCCCTTCACA AAATGGCGAA TCCGCTCTTG TGGACTGAAG CAAAGCTGGG TGGCATATCT 33425 |||||||||| ||| |||| | |||| ||||| |||||| || || || |||| |||| ||||| CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 GGATAGTGCA CGAAACCTAG CCTCATAAGC AGTAACTGAC ATCCTGCCTT GCTCTAGGCT 33485 ||||||||| ||||| ||| ||||||| || | |||| | ||||| || | | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 TAGAAACTAA TCTCTCCTCC TATCCCTCAA AGTACGGGGT ATATACTTCT CCATAAATAA 33545 | |||| | || || ||| |||| ||||| ||| | || ||||| |||| |||| || || CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 ACTAGAGAAT GATGCCCAAG TCATGGGTGG TGCCTGTGCT GGTTGACACT CAACATATGA 33605 |||||||||| ||| |||||| |||| ||||| ||||| || | |||||||||| |||||| ||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCAT TTCCCTGAAA CTGATAGGTT ACGAACTCAA CACCGAATGG 33665 ||||||||| || ||||| | | || || || ||||||| | |||||||| | | || || ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCCACTATG CCCATCTTAT GTAGCAACTC ATGACAATCA ACCACAAAAT CATAGGCATC 33725 || ||||| ||||| || | |||| | ||| |||||||||| |||| ||||| |||| ||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 546 CTCAGATTCA ACACCCTTGA AGACTGGAGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 33785 |||||||| ||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAGTTC 606 ATGCTGATCA CTTTTCATTA TAGGCCCTGT AGTCAACCGA GGAAACGTTC CTATTTCCAT 33845 ||| ||||| || |||| | || |||| || ||||| || ||||| || | ||||| ||| ATGTTGATCG TTTGTCATAA TAAGCCCAGT AGTCAGACGT GGAAATGTGC CTATTCCCAA 666 TGAAGCATCC ATG 33858 || ||||| ||| TGGTGCATCT ATG 679 hqPGS_C08HBa0027D09.1+_SGN-E351625+ (33186 33858) ******************************************************************************** EST sequence 129 +strand 612 n (File: SGN-E357065+) 1 GGGTTCTGTC CTCTAGAATA AGAACCATTA TACTCTCCTC CCCTTCTAAA CCTCTTCGAT 61 GTCGATGTCG TGGTGAAGTC ATCCGGTTTC ACTCCTTCCA CCTCAATCAC AAAGTCTACC 121 ACCTCTTGAA AGGATGTTGC TGTTGCCGCT ATCTGTAAGG CTGAAATCCG CAATTCTGAT 181 CTCAACCCCT TCACAAAACG GCGGATCCGT TCTTGTGGAC TAAAACAGAG TTGGGTGGCG 241 TATCTGGATA GTGCGCGAAA TTTAGCCTCA TACGCGTTTA CTGTCATCCT TCCCTGTTCA 301 AGACTCAAGA ACTCATCCCT TTTCCTATCT CTCAAAGTCC TTGGGATATA TTTCTCCATG 361 AACAAACTAG AGAATGATTC CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCAACA 421 TGTGAACGCC ACCACATCTT GGCGTTCCCT TGGAACTGAT AGCTCACGAA CTCGACGCCA 481 AACCTCTCTA CTATCCCCAT TTTGTGTAGT AGCTCATGAC AATCAACCAG AAAATCATAA 541 GCATCTTCAG ATTCTGCACC CTTGAAGACT GGAGGTTTCA GTTTCAAGAA CTTACTGAAA 601 AGTCATGTTG AT Predicted gene structure (within gDNA segment 31213 to 34483): Exon 1 33186 33793 ( 608 n); cDNA 6 612 ( 607 n); score: 0.832 MATCH C08HBa0027D09.1+ SGN-E357065+ 0.832 608 0.993 C PGS_C08HBa0027D09.1+_SGN-E357065+ (33186 33793) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTG GAGTAAGAAC CATTAAACTC ACCTCCCTTA CGAAACTTTT TAAAGGTCAA 33245 ||||||||| || ||||||| ||||| |||| |||||| | | |||| | | | | ||| | CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 65 TGCCATGGTG AAGTCTTCTG GATTCACTCC CTCCACTTCT ATCACAATAT CTACCACTTC 33305 || | ||||| ||||| || | | |||||||| ||||| || ||||||| | ||||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 125 CTGAAAGGAT TTTGCTGTAG CAGCTACCTG TAAGGCTGAA ATCCGCAAAT TTGACCTCAA 33365 ||||||||| ||||||| | | |||| ||| |||||||||| |||||||| | ||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 185 CCCCTTCACA AAATGGCGAA TCCGCTCTTG TGGACTGAAG CAAAGCTGGG TGGCATATCT 33425 |||||||||| ||| |||| | |||| ||||| |||||| || || || |||| |||| ||||| CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 245 GGATAGTGCA CGAAACCTAG CCTCATAAGC AGTAACTGAC ATCCTGCCTT GCTCTAGGCT 33485 ||||||||| ||||| ||| ||||||| || | |||| | ||||| || | | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 305 TAGAAACTAA TCTCTCCTCC TATCCCTCAA AGTACGGGGT ATATACTTCT CCATAAATAA 33545 | |||| | || || ||| |||| ||||| ||| | || ||||| |||| |||| || || CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 365 ACTAGAGAAT GATGCCCAAG TCATGGGTGG TGCCTGTGCT GGTTGACACT CAACATATGA 33605 |||||||||| ||| |||||| |||| ||||| ||||| || | |||||||||| |||||| ||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 425 CCGCCACCAC ATTTTGGCAT TTCCCTGAAA CTGATAGGTT ACGAACTCAA CACCGAATGG 33665 ||||||||| || ||||| | | || || || ||||||| | |||||||| | | || || ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 485 TTCCACTATG CCCATCTTAT GTAGCAACTC ATGACAATCA ACCACAAAAT CATAGGCATC 33725 || ||||| ||||| || | |||| | ||| |||||||||| |||| ||||| |||| ||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 545 CTCAGATTCA ACACCCTTGA AGACTGGAGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 33785 |||||||| ||||||||| |||||||||| ||||| |||| |||||||||| ||||||| || TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAG-TC 604 ATGCTGAT 33793 ||| |||| ATGTTGAT 612 hqPGS_C08HBa0027D09.1+_SGN-E357065+ (33186 33793) ******************************************************************************** EST sequence 126 +strand 720 n (File: SGN-E356614+) 1 GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 61 CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 121 TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 181 CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 241 GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 301 CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 361 CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 421 CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 481 GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 541 TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 601 CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCCCT 661 CCCTTTCTCT ATTACTTCCT CAGTCAGTGG AAGAGTCACT GCCCTAGTAT CAGATGGGCT Predicted gene structure (within gDNA segment 29451 to 36060): Exon 1 33381 34099 ( 719 n); cDNA 1 719 ( 719 n); score: 0.848 MATCH C08HBa0027D09.1+ SGN-E356614+ 0.848 719 0.999 C PGS_C08HBa0027D09.1+_SGN-E356614+ (33381 34099) Alignment (genomic DNA sequence = upper lines): GCGAATCCGC TCTTGTGGAC TGAAGCAAAG CTGGGTGGCA TATCTGGATA GTGCACGAAA 33440 |||||||||| ||||| |||| |||| || || || |||||| |||||||||| |||||||||| GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 60 CCTAGCCTCA TAAGCAGTAA CTGACATCCT GCCTTGCTCT AGGCTTAGAA ACTAATCTCT 33500 | |||||||| |||||| ||| |||||| ||| ||||||||| ||||| | | ||| ||| || CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 120 CCTCCTATCC CTCAAAGTAC GGGGTATATA CTTCTCCATA AATAAACTAG AGAATGATGC 33560 || ||||| |||||||| | |||| ||||| |||||||||| || |||||| ||||||| || TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 180 CCAAGTCATG GGTGGTGCCT GTGCTGGTTG ACACTCAACA TATGACCGCC ACCACATTTT 33620 ||||||||| |||| ||||| | |||||| |||||| | | | |||||||| ||||||||| CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 240 GGCATTTCCC TGAAACTGAT AGGTTACGAA CTCAACACCG AATGGTTCCA CTATGCCCAT 33680 ||| || || |||||||||| | || || || ||| ||||| || |||| | |||| ||||| GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 300 CTTATGTAGC AACTCATGAC AATCAACCAC AAAATCATAG GCATCCTCAG ATTCAACACC 33740 ||| ||||| | ||| |||| | ||||||| ||||||||| |||||||| | ||||| |||| CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 360 CTTGAAGACT GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCACTTTT 33800 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || | CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 420 CATTATAGGC CCTGTAGTCA ACCGAGGAAA CGTTCCTATT TCCATTGAAG CATCCATGCG 33860 ||||||||| | ||||||| | || ||||| || ||||| |||| || | |||||||||| CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 480 GGGATCCCCA GCAGCGGCAC GTCGTACTCC CGTAACCTGG GGTGCTGGTG CAGAAAACAC 33920 |||| || | | ||| ||| || ||||| | | |||| | |||| ||| | |||||||||| GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 540 TGGAGGTGTC TGACCTTGAT CAGATAACCC ACTAAGATAA GCAAGAACCT GATTAATCAT 33980 |||||||| |||||||||| |||||||||| ||||||||| || ||||||| |||| ||||| TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 600 CTCTGGGGTA GGTTGGGGTG GTAACTCCTC ACTCCGCACT TGTTCATTCT CCCCTTCCTC 34040 |||||||||| |||||||||| | | ||||| | | ||||| || ||| | | |||| ||| | CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCC-C 659 ACCCTCTCTC -AAAACTTCC TCAGTCGGCT GAGGAGTCAC CGCCCTAGTA CTAGATGGGC 34099 |||| |||| | |||||| |||||| | || ||||||| ||||||||| |||||||| TCCCTTTCTC TATTACTTCC TCAGTCAGTG GAAGAGTCAC TGCCCTAGTA TCAGATGGGC 719 hqPGS_C08HBa0027D09.1+_SGN-E356614+ (33381 34099) ******************************************************************************** EST sequence 27 +strand 664 n (File: SGN-E352401+) 1 AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 61 AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 121 CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 181 AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 241 GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 301 GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 361 GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 421 TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 481 AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 541 AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 601 TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 661 TTCT Predicted gene structure (within gDNA segment 29481 to 35530): Exon 1 33384 34047 ( 664 n); cDNA 1 664 ( 664 n); score: 0.849 MATCH C08HBa0027D09.1+ SGN-E352401+ 0.849 664 1.000 C PGS_C08HBa0027D09.1+_SGN-E352401+ (33384 34047) Alignment (genomic DNA sequence = upper lines): AATCCGCTCT TGTGGACTGA AGCAAAGCTG GGTGGCATAT CTGGATAGTG CACGAAACCT 33443 |||||||||| || ||||||| | || || || ||||||||| |||||||||| |||||||| | AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 60 AGCCTCATAA GCAGTAACTG ACATCCTGCC TTGCTCTAGG CTTAGAAACT AATCTCTCCT 33503 |||||||||| ||| |||||| ||| ||| || |||||||||| || | |||| ||| || | AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 120 CCTATCCCTC AAAGTACGGG GTATATACTT CTCCATAAAT AAACTAGAGA ATGATGCCCA 33563 | |||||||| ||||| |||| | |||||||| ||||||||| |||||| ||| |||| ||||| CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 180 AGTCATGGGT GGTGCCTGTG CTGGTTGACA CTCAACATAT GACCGCCACC ACATTTTGGC 33623 |||||| ||| | ||||| | ||||||||| ||| | || | |||||||||| |||||| ||| AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 240 ATTTCCCTGA AACTGATAGG TTACGAACTC AACACCGAAT GGTTCCACTA TGCCCATCTT 33683 || || ||| |||||||| | | || ||||| ||||| || |||| |||| | |||||||| GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 300 ATGTAGCAAC TCATGACAAT CAACCACAAA ATCATAGGCA TCCTCAGATT CAACACCCTT 33743 ||||| | | || ||||| | |||||| ||| |||||| ||| ||||| |||| || ||||||| GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 360 GAAGACTGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CACTTTTCAT 33803 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| || || |||| GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 420 TATAGGCCCT GTAGTCAACC GAGGAAACGT TCCTATTTCC ATTGAAGCAT CCATGCGGGG 33863 |||||| | |||||||| | | ||||| || ||||| ||| | || | ||| |||||||||| TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 480 ATCCCCAGCA GCGGCACGTC GTACTCCCGT AACCTGGGGT GCTGGTGCAG AAAACACTGG 33923 | || || | || ||| || ||||| | | |||| | ||| | ||| |||| |||||||||| AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 540 AGGTGTCTGA CCTTGATCAG ATAACCCACT AAGATAAGCA AGAACCTGAT TAATCATCTC 33983 ||||| ||| |||||||||| ||||||| || ||||||||| |||||||||| | |||||||| AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 600 TGGGGTAGGT TGGGGTGGTA ACTCCTCACT CCGCACTTGT TCATTCTCCC CTTCCTCACC 34043 |||||||||| ||||||| | ||| | |||||||| ||| | |||| | ||||| || TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 660 CTCT 34047 ||| TTCT 664 hqPGS_C08HBa0027D09.1+_SGN-E352401+ (33384 34047) ******************************************************************************** EST sequence 306 -strand 554 n (File: SGN-E329287-) 1 AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 61 ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 121 CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 181 ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 241 GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 301 TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 361 CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 421 GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 481 CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 541 CAGATGGGCT AGGT Predicted gene structure (within gDNA segment 32941 to 35334): Exon 1 33551 34104 ( 554 n); cDNA 1 554 ( 554 n); score: 0.874 MATCH C08HBa0027D09.1+ SGN-E329287- 0.874 554 1.000 C PGS_C08HBa0027D09.1+_SGN-E329287- (33551 34104) Alignment (genomic DNA sequence = upper lines): AGAATGATGC CCAAGTCATG GGTGGTGCCT GTGCTGGTTG ACACTCAACA TATGACCGCC 33610 |||||||||| ||||||||| ||||||||| || |||||| |||||||||| | |||||||| AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 60 ACCACATTTT GGCATTTCCC TGAAACTGAT AGGTTACGAA CTCAACACCG AATGGTTCCA 33670 |||||||||| ||| || || |||||||||| | || || || ||||||||| || |||| | ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 120 CTATGCCCAT CTTATGTAGC AACTCATGAC AATCAACCAC AAAATCATAG GCATCCTCAG 33730 |||| ||||| ||| ||||| | |||||||| | ||||||| |||||| ||| |||||||||| CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 180 ATTCAACACC CTTGAAGACT GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT 33790 |||||||||| |||| ||||| ||||||||| |||||||||| |||||| ||| |||||||||| ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 240 GATCACTTTT CATTATAGGC CCTGTAGTCA ACCGAGGAAA CGTTCCTATT TCCATTGAAG 33850 ||||| || | |||||||||| |||||||||| || ||||| |||||||||| |||| ||| | GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 300 CATCCATGCG GGGATCCCCA GCAGCGGCAC GTCGTACTCC CGTAACCTGG GGTGCTGGTG 33910 ||| ||||| |||| | || | || ||| || |||| | || | |||| |||||| ||| TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 360 CAGAAAACAC TGGAGGTGTC TGACCTTGAT CAGATAACCC ACTAAGATAA GCAAGAACCT 33970 |||||||||| |||||||| || ||||||| |||||||||| ||||| ||| |||||||||| CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 420 GATTAATCAT CTCTGGGGTA GGTTGGGGTG GTAACTCCTC ACTCCGCACT TGTTCATTCT 34030 |||| ||||| |||| ||||| |||||||||| | || ||||| | || ||||| |||||||||| GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 480 CCCCTTCCTC ACCCTCTCTC AAAACTTCCT CAGTCGGCTG AGGAGTCACC GCCCTAGTAC 34090 |||| ||||| ||||||||| | ||||||| |||| || | ||| |||||| ||| |||||| CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 540 TAGATGGGCC AGGT 34104 |||||||| |||| CAGATGGGCT AGGT 554 hqPGS_C08HBa0027D09.1+_SGN-E329287- (33551 34104) ******************************************************************************** EST sequence 71 +strand 433 n (File: SGN-E352180+) 1 CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 61 GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 121 CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 181 ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 241 ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 301 TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 361 CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 421 GCCGCTGTTC TCC Predicted gene structure (within gDNA segment 33031 to 36797): Exon 1 33739 34168 ( 430 n); cDNA 1 430 ( 430 n); score: 0.858 MATCH C08HBa0027D09.1+ SGN-E352180+ 0.858 430 0.993 C PGS_C08HBa0027D09.1+_SGN-E352180+ (33739 34168) Alignment (genomic DNA sequence = upper lines): CCCTTGAAGA CTGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCACTT 33798 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ||||||| || CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 60 TTCATTATAG GCCCTGTAGT CAACCGAGGA AACGTTCCTA TTTCCATTGA AGCATCCATG 33858 ||||||||| |||| ||||| ||| || ||| || || |||| | | || || | |||||||| GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 120 CGGGGATCCC CAGCAGCGGC ACGTCGTACT CCCGTAACCT GGGGTGCTGG TGCAGAAAAC 33918 |||||| || || ||| || | || ||||| | | |||| | |||| ||| ||||||||| CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 180 ACTGGAGGTG TCTGACCTTG ATCAGATAAC CCACTAAGAT AAGCAAGAAC CTGATTAATC 33978 |||||||||| |||||||| ||||||||| || ||||||| |||| ||||| |||||| ||| ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 240 ATCTCTGGGG TAGGTTGGGG TGGTAACTCC TCACTCCGCA CTTGTTCATT CTCCCCTTCC 34038 |||||||||| |||||||||| ||| | ||| ||| | ||| |||||||| | ||||| ||| ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 300 TCACCCTCTC TCAAAACTTC CTCAGTCGGC TGAGGAGTCA CCGCCCTAGT ACTAGATGGG 34098 || || |||| | | ||||| ||||||||| ||||||||| |||||||||| || ||||||| TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 360 CCAGGTGCTT GTCCTCTTCC TCTAGAGGAC GTCCTCCCGC GACCTCTACC ACGGCCTCTT 34158 | ||| || || ||||||| |||||| ||| |||||||| | |||||||||| |||||| ||| CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 420 GCAACTGCTC 34168 || ||| || GCCGCTGTTC 430 hqPGS_C08HBa0027D09.1+_SGN-E352180+ (33739 34168) ******************************************************************************** EST sequence 275 -strand 286 n (File: SGN-E355114-) 1 CCACAGCCCC AGTGGCTGGC TCAGTTGTTT CTTGTCTGGC CGGTGTTGGT GTTGACGTGG 61 TCGTTGCTCT AGTTCTAACC ATCTGCAAAA GAGAGTGAAG ATGGTCAGAT ACCAATTTGT 121 ATCGCCTAGA TACCAATTGG ACTCAAGTAG TAGCACGAAA GAAAGAATGA AAGGGTGAAA 181 TTTTCCTAAA GTCTTATAGC CTCTCAAAGA AAAGTAAAGG CGTCCCCCTA CCGTTCCTAA 241 AGACTCTACT AGACCTGTTC TTGTGTGATG AGACCAACGA ACCTAA Predicted gene structure (within gDNA segment 32452 to 35140): Exon 1 34180 34459 ( 280 n); cDNA 3 286 ( 284 n); score: 0.864 MATCH C08HBa0027D09.1+ SGN-E355114- 0.864 280 0.979 C PGS_C08HBa0027D09.1+_SGN-E355114- (34180 34459) Alignment (genomic DNA sequence = upper lines): ACAGCCCCAG TGGGTGGCTC AGACACATCT TGTCTTGCCG GTGTTGGCGT TGGCGCATTT 34239 |||||||||| ||| |||||| || ||| ||||| |||| ||||||| || || || | ACAGCCCCAG TGGCTGGCTC AGTTGTTTCT TGTCTGGCCG GTGTTGGTGT TGACGTGGTC 62 GTTGCTCTAG TTCTAACCAT CTGCGAAATA GAGTGAGGAT GGTCAGATAC ATATTTGTAT 34299 |||||||||| |||||||||| |||| ||| | |||||| ||| |||||||||| |||||||| GTTGCTCTAG TTCTAACCAT CTGCAAAAGA GAGTGAAGAT GGTCAGATAC CAATTTGTAT 122 CACCTAGATA CCAATTGGAT CCAAGTAATA GCACGAAAGA AAGAAAG-AA ---TGAAATT 34355 | |||||||| ||||||||| |||||| || |||||||||| ||||| | || ||||||| CGCCTAGATA CCAATTGGAC TCAAGTAGTA GCACGAAAGA AAGAATGAAA GGGTGAAATT 182 TTCCTAAAGT CTTATAGCCT CTCAAAGAAA AGTAAAGGCG TCCCCCTACC GTTCCTTAAG 34415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TTCCTAAAGT CTTATAGCCT CTCAAAGAAA AGTAAAGGCG TCCCCCTACC GTTCCTAAAG 242 ACTCTACTCG ACTCGTTCTT GTGTGATGAG ACCAATGAAC CTAA 34459 |||||||| | || |||||| |||||||||| ||||| |||| |||| ACTCTACTAG ACCTGTTCTT GTGTGATGAG ACCAACGAAC CTAA 286 hqPGS_C08HBa0027D09.1+_SGN-E355114- (34180 34459) ******************************************************************************** EST sequence 138 +strand 710 n (File: SGN-E392027+) 1 CCACAGCCCC AGTGGCTGGC TCAGTCGCAC CCTGTCCCGC CGGTGCTGGT GTTGATGCTG 61 GCGTAGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 121 ATTTGTATCA CCTAGATACC AATTGGACCC AAGTAATAGC ACGAAAGAAG AAAGAATGGA 181 ATTTTCCAAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAG GCATCCCCCT ACCGTTCCTT 241 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 301 AGTTTGTCAC GACCAAAACC GGGTTGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC 361 GAACCAACCA ATCTAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA 421 CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC 481 CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA ACTAAGAGTA 541 GTCTAAAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 601 TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 661 TAAGACTGGC TTGAATTACT GTTGAGTTGA ACACGATGGC ACGTTTGCTG Predicted gene structure (within gDNA segment 32960 to 37258): Exon 1 34215 34893 ( 679 n); cDNA 44 710 ( 667 n); score: 0.838 MATCH C08HBa0027D09.1+ SGN-E392027+ 0.838 679 0.956 C PGS_C08HBa0027D09.1+_SGN-E392027+ (34215 34893) Alignment (genomic DNA sequence = upper lines): TGCCGGTGTT GGCGTTGGCG CATTTGTTGC TCTAGTTCTA ACCATCTGCG AAATAGAGTG 34274 ||| |||||| | | ||||| | | ||||| |||||||||| |||||||||| |||||||||| TGCTGGTGTT GATGCTGGCG TAGTCGTTGC TCTAGTTCTA ACCATCTGCG AAATAGAGTG 103 AGGATGGTCA GATACATATT TGTATCACCT AGATACCAAT TGGATCCAAG TAATAGCACG 34334 | |||||||| ||||| ||| |||||||||| |||||||||| |||| ||||| |||||||||| AAGATGGTCA GATACCAATT TGTATCACCT AGATACCAAT TGGACCCAAG TAATAGCACG 163 AAAGAAAGAA AGAATGAAAT TTTCCTAAAG TCTTATAGCC TCTCAAAGAA AAGTAAAGGC 34394 |||| ||||| |||||| ||| ||||| |||| |||||||||| |||||| ||| |||||||||| AAAG-AAGAA AGAATGGAAT TTTCCAAAAG TCTTATAGCC TCTCAAGGAA AAGTAAAGGC 222 GTCCCCCTAC CGTTCCTTAA GACTCTACTC GACTCGTTCT TGTGTGATGA GACCAATGAA 34454 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| ATCCCCCTAC CGTTCCTTAA GACTCTACTA GACTCGTTCT TGTGTGATGA GACCAACGAA 282 CCTAATGCTC TGATACCAAG TTTGTCAGGA CCCAAAACGA GCTGCGAGTG GCACCCACAT 34514 |||||||||| |||||||||| ||||||| || || ||| || | ||||| || ||||||||| CCTAATGCTC TGATACCAAG TTTGTCACGA CCAAAACCGG GTTGCGACTG GCACCCACAC 342 TTATCCTTTT ATGTGAGCGA ACCAATCAAT CTAAACCCAA AATCATTTAC CAATAATTGA 34574 ||| ||| | |||||||||| ||||| |||| || || || || ||||| |||| | | | TTACCCTCCT ATGTGAGCGA ACCAACCAAT CT-AA-CCTT AA-CATTT-- CAAT-A-T-A 394 ACCATAATAA AAAAAATACA ATGCGGAAGA CTTAAAACTC ATT-AATGAA AATAGATT-A 34632 | || | | | ||| | | ||| |||||| ||| |||||| ||| ||| | | ||| | A-TATCA-AC AGAAAGT--A ATGTGGAAGA CTT-AAACTC ATTAAATACA GACCAATTCA 449 ATAACTTCTA AAAACTCGAT ACTTATTATT CCC-AAAATC TGGAAGTCAT CACCACAAGA 34691 |||||||| |||| || | | ||||||| ||| |||||| |||||||||| |||||||||| TTAACTTCT- AAAATTCAAC ATCTATTATT CCCCAAAATC TGGAAGTCAT CACCACAAGA 508 ACATCTATCC TCAAATTACT AAATCTAAGA GTA-TCTAAG AAGCT-AAAA TAAATAAACA 34749 ||||||| |||||| ||| ||| |||||| ||| ||||| ||||| |||| || |||| | ACATCTACGA TCAAATGACT AAA-CTAAGA GTAGTCTAA- AAGCTAAAAA TACATAAGAA 566 GCTAGTCCGT GCCAGAACTT CAAGGAATCA AGACGTGAAG AAGAAGATCC AGTCCAAGCT 34809 |||||||| | ||| ||| || ||||| |||| |||| ||||| |||||||||| |||||||||| GCTAGTCCAT GCCGGAAGTT CAAGGCATCA AGACTTGAAG AAGAAGATCC AGTCCAAGCT 626 AGAAACAATA GCTCACCCTG AA-TTCTGGT GTGATGAAGA CTGACTAGAG TTGAGGACGA 34868 |||| || || |||||||||| || ||| | | || | |||| ||| || || || | || AGAAGCATTA GCTCACCCTG AATTTCCGAT GT-AGTAAGA CTGGCTTGAA TTACTGTTGA 685 GTTGAAGACG ATGGCACGCT TACTG 34893 |||||| ||| |||||||| | | ||| GTTGAACACG ATGGCACGTT TGCTG 710 hqPGS_C08HBa0027D09.1+_SGN-E392027+ (34215 34893) ******************************************************************************** EST sequence 242 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 32808 to 39917): Exon 1 34240 34934 ( 695 n); cDNA 5 690 ( 686 n); score: 0.805 Intron 1 34935 35423 ( 489 n); Pd: 0.000 (s: 0.81), Pa: 0.993 (s: 0) Exon 2 35424 35455 ( 32 n); cDNA 691 722 ( 32 n); score: 0.500 MATCH C08HBa0027D09.1+ SGN-E351546- 0.805 727 0.997 C PGS_C08HBa0027D09.1+_SGN-E351546- (34240 34934,35424 35455) Alignment (genomic DNA sequence = upper lines): GTTGCTCTAG TTCTAACCAT CTGCGAAATA GAGTGAGGAT GGTCAGATAC ATATTTGTAT 34299 |||||||||| ||||| |||| ||| | || | ||||||| || |||||||||| ||| |||| GTTGCTCTAG TTCTACCCAT CTG-GCAAGA GAGTGAGNAT GGTCAGATAC CAATTCGTAT 63 CACCTAGATA CCAATTGGAT CCAAGTAATA GCACGAAAGA AAGAAAGAAT GA---AA-TT 34355 | | |||||| ||||||| | | ||||| || |||||||||| ||||| ||| || || || CGCTTAGATA CCAATTGACT CGAAGTAGTA GCACGAAAGA AAGAATGAAA GAGTGAAGTT 123 TTCCTAAAGT CTTATAGCCT CTCAAAGAAA AGTAAAGGCG TCCCCCTACC GTTCCTTAAG 34415 |||||||||| |||||||||| ||||| |||| |||||| ||| |||||||||| |||||||||| TTCCTAAAGT CTTATAGCCT CTCAAGGAAA AGTAAAAGCG TCCCCCTACC GTTCCTTAAG 183 ACTCTACTCG ACTCGTTCTT GTGTGATGAG ACCAATGAAC CTAATGCTCT GATACCAAG- 34474 |||||||| | ||| |||||| |||||||||| ||||| |||| |||||||||| ||||||||| ACTCTACTAG ACTTGTTCTT GTGTGATGAG ACCAACGAAC CTAATGCTCT GATACCAAGT 243 TTTGTCAGGA CCCAAA-ACG AGCTGCGAGT GGCACCCACA TTTATCCTTT TATGTGAGCG 34533 ||||||| || |||||| || || || | | |||||||||| ||| ||| |||||||||| TTTGTCACGA CCCAAATCCG GGCCGCCACT GGCACCCACA CTTACCCTCC TATGTGAGCG 303 AACCAATCAA TCTAAACCCA AAATCATTTA CCAATAATTG AACCATAATA AAAAAAATAC 34593 |||||| ||| |||||| || || ||||| | || || | ||| | | | ||| AACCAACCAA TCTAAA-CCT TAA-CATTT- -C---AA-TG TA--ATAGCA ACAGAAA-GT 352 AATGCGGAAG ACTTAAAACT CATTAATGAA AATAGATTAA TAACTTCTAA AAACTCGATA 34653 |||||||||| |||| ||||| ||||||| || ||| | ||| ||| || || | || AATGCGGAAG ACTT-AAACT CATTAAT-AA AAT-CAATAA CTACTATTAT TAA-AC-AT- 406 CTTATTATTC CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTATCCTC AAATTACTAA 34713 | |||||||| |||||| ||| |||||||||| ||||||||| ||||| | | ||| |||||| C-TATTATTC CCAAAACCTG GAAGTCATCA TCACAAGAAC ATCTA-CTTT AAACTACTAA 464 ATCTAAGAGT ATCTAAGAAG CT--AAAA-T AAATAAACAG CTAGTCCGTG CCAGAACTTC 34770 ||||||||| ||||||||| || |||| | | |||| || ||||||| || || ||| ||| TTCTAAGAGT TTCTAAGAAG CTAAAAAATT ACATAAGAAG CTAGTCCATG CCGGAAGTTC 524 AAGGAATCAA GACGTGAAGA AGAAGATCCA GTCCAAGCTA GAAACAATAG CTCACCCTGA 34830 |||| ||||| ||| ||||| |||||||||| |||||||||| ||| | ||| |||||||||| AAGGCATCAA GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA 584 A-TTCTGGTG TGATGAAGAC TGACTAGAGT TGAGGACGAG TTGAAGACGA TGGCACGCTT 34889 | || |||| ||| |||||| || || |||| | | ||| | ||||| || |||||| || AGATCCGGTG TGACGAAGAC TGGCTTGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT 644 ACTGCACTCC ACAAATAACA AGAA-AAACA AATACAAGTA GGGGTGTAAC GACTTGTTTA 34948 ||||||||| ||||||| || |||| ||| | ||| ||||| ||||| GCTGCACTCC ACAAATACCA AGAAGAAAAA CATAAAAGTA GGGGTC.... .......... 690 GTCGTTTTGA GCAGCAGATT TTATTCTGGA AAAACTGTCT TGGTCGACGG ATCCCACGAC 35008 .......... .......... .......... .......... .......... .......... 690 GGACCGTCAT GGGCATGACG GACCGTCGAG GGGTTCTCGT TCCAAAACAC TTAGAATTTC 35068 .......... .......... .......... .......... .......... .......... 690 TGAAATTTGG GTATTGAAAT CGACTCTCTG AACTTCGTGA CGACATGGCA GGACGGACCA 35128 .......... .......... .......... .......... .......... .......... 690 TCGTGGGCAC GATGGACCGT CACAGACCTT TCAAAGAATT GAGGCTCTGA ACTCTGTGAC 35188 .......... .......... .......... .......... .......... .......... 690 GGAAGCAGCA GGACGGACCG TTTCAGGCAT GACGGGCCGT CACAGACTGT GTAATCCCAG 35248 .......... .......... .......... .......... .......... .......... 690 GCTCCATCGG ATTTCTGTTA AATATTTTAA GGGATGTTTT GGACTGTTCA TGCTATAATT 35308 .......... .......... .......... .......... .......... .......... 690 ATAAATTTAG TGGGTTAATG TTAATAATTT AACTACTTGA GTGTTAAAAG AGATAACCTT 35368 .......... .......... .......... .......... .......... .......... 690 GAATTAATTA ATGGGTTAAT TCATCATCTT TTATACTTAA TTATATGTTA ATTAGGGTAA 35428 ||| .......... .......... .......... .......... .......... .....AGTAC 695 AAGAAAGAGG GTTTGAATAA GAAAAAT 35455 || | | | ||| || | || AAAACACGGC TACTGAGTAG ATATCAT 722 hqPGS_C08HBa0027D09.1+_SGN-E351546- (34240 34934) ******************************************************************************** EST sequence 294 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 33548 to 39917): Exon 1 34334 34934 ( 601 n); cDNA 28 616 ( 589 n); score: 0.814 Intron 1 34935 35423 ( 489 n); Pd: 0.000 (s: 0.83), Pa: 0.993 (s: 0) Exon 2 35424 35455 ( 32 n); cDNA 617 648 ( 32 n); score: 0.500 MATCH C08HBa0027D09.1+ SGN-E356696- 0.814 633 0.966 C PGS_C08HBa0027D09.1+_SGN-E356696- (34334 34934,35424 35455) Alignment (genomic DNA sequence = upper lines): GAAAGAAAGA AAGAATGAAA TTTTCCTAAA GTCTTATAGC CTCTCAAAGA AAAGTAAAGG 34393 ||||||| || |||| |||| |||||||||| |||||||||| ||||||| || |||||||| | GAAAGAATGA AAGAGTGAAG TTTTCCTAAA GTCTTATAGC CTCTCAAGGA AAAGTAAAAG 87 CGTCCCCCTA CCGTTCCTTA AGACTCTACT CGACTCGTTC TTGTGTGATG AGACCAATGA 34453 |||||||||| |||||||||| |||||||||| |||| |||| |||||||||| ||||||| || CGTCCCCCTA CCGTTCCTTA AGACTCTACT AGACTTGTTC TTGTGTGATG AGACCAACGA 147 ACCTAATGCT CTGATACCAA G-TTTGTCAG GACCCAAA-A CGAGCTGCGA GTGGCACCCA 34511 |||||||||| |||||||||| | ||||||| |||||||| || || || | ||||||||| ACCTAATGCT CTGATACCAA GTTTTGTCAC GACCCAAATC CGGGCCGCCA CTGGCACCCA 207 CATTTATCCT TTTATGTGAG CGAACCAATC AATCTAAACC CAAAATCATT TACCAATAAT 34571 || ||| ||| |||||||| |||||||| | |||||||| | | || |||| | | || CACTTACCCT CNTATGTGAG CGAACCAACC AATCTAAA-C CTTAA-CATT T--C---AA- 259 TGAACCATAA TAAAAAAAAT ACAATGCGGA AGACTTAAAA CTCATTAATG AAAATAGATT 34631 || | ||| || | ||| |||||||| |||||| ||| ||||||||| ||||| | | TGTA--ATAG CAACAGAAA- GTAATGCGGA AGACTT-AAA CTCATTAAT- AAAAT-CAAT 313 AATAACTTCT AAAAACTCGA TACTTATTAT TCCCAAAATC TGGAAGTCAT CACCACAAGA 34691 || ||| | | || | | | | |||||| |||||||| | |||||||||| || ||||||| AACTACTATT ATTAA-AC-A T-C-TATTAT TCCCAAAACC TGGAAGTCAT CATCACAAGA 369 ACATCTATCC TCAAATTACT AAATCTAAGA GTATCTAAGA AGCT--AAAA -TAAATAAAC 34748 ||||||| | | ||| |||| || ||||||| || ||||||| |||| |||| || |||| ACATCTA-CT TTAAACTACT AATTCTAAGA GTTTCTAAGA AGCTAAAAAA TTACATAAGA 428 AGCTAGTCCG TGCCAGAACT TCAAGGAATC AAGACGTGAA GAAGAAGATC CAGTCCAAGC 34808 ||||||||| |||| ||| | |||||| ||| ||||| |||| | |||||||| |||||||||| AGCTAGTCCA TGCCGGAAGT TCAAGGCATC AAGACATGAA GGAGAAGATC CAGTCCAAGC 488 TAGAAACAAT AGCTCACCCT GAA-TTCTGG TGTGATGAAG ACTGACTAGA GTTGAGGACG 34867 ||||| | | |||||||||| ||| || || ||||| |||| |||| || || ||| | | TAGAAGCGTT AGCTCACCCT GAAGATCCGG TGTGACGAAG ACTGGCTTGA GTTACTGTTG 548 AGTTGAAGAC GATGGCACGC TTACTGCACT CCACAAATAA CAAGAA-AAA CAAATACAAG 34926 ||| ||||| || |||||| || ||||||| |||||||||| |||||| ||| | ||| ||| AGTCGAAGAT GACGGCACGT TTGCTGCACT CCACAAATAA CAAGAAGAAA AACATAAAAG 608 TAGGGGTGTA ACGACTTGTT TAGTCGTTTT GAGCAGCAGA TTTTATTCTG GAAAAACTGT 34986 ||||||| TAGGGGTC.. .......... .......... .......... .......... .......... 616 CTTGGTCGAC GGATCCCACG ACGGACCGTC ATGGGCATGA CGGACCGTCG AGGGGTTCTC 35046 .......... .......... .......... .......... .......... .......... 616 GTTCCAAAAC ACTTAGAATT TCTGAAATTT GGGTATTGAA ATCGACTCTC TGAACTTCGT 35106 .......... .......... .......... .......... .......... .......... 616 GACGACATGG CAGGACGGAC CATCGTGGGC ACGATGGACC GTCACAGACC TTTCAAAGAA 35166 .......... .......... .......... .......... .......... .......... 616 TTGAGGCTCT GAACTCTGTG ACGGAAGCAG CAGGACGGAC CGTTTCAGGC ATGACGGGCC 35226 .......... .......... .......... .......... .......... .......... 616 GTCACAGACT GTGTAATCCC AGGCTCCATC GGATTTCTGT TAAATATTTT AAGGGATGTT 35286 .......... .......... .......... .......... .......... .......... 616 TTGGACTGTT CATGCTATAA TTATAAATTT AGTGGGTTAA TGTTAATAAT TTAACTACTT 35346 .......... .......... .......... .......... .......... .......... 616 GAGTGTTAAA AGAGATAACC TTGAATTAAT TAATGGGTTA ATTCATCATC TTTTATACTT 35406 .......... .......... .......... .......... .......... .......... 616 AATTATATGT TAATTAGGGT AAAAGAAAGA GGGTTTGAAT AAGAAAAAT 35455 || | || | | | ||| | | | || .......... .......AGT ACAAAACACG GCTACTGAGT AGATATCAT 648 hqPGS_C08HBa0027D09.1+_SGN-E356696- (34334 34934) ******************************************************************************** EST sequence 16 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 32524 to 39413): Exon 1 34483 34879 ( 397 n); cDNA 51 436 ( 386 n); score: 0.824 PPA cDNA 13 1 MATCH C08HBa0027D09.1+ SGN-E370357+ 0.824 397 0.585 C PGS_C08HBa0027D09.1+_SGN-E370357+ (34483 34879) Alignment (genomic DNA sequence = upper lines): GACCCAAAAC GAGCTGCGAG TGGCACCCAC ATTTATCCTT TTATGTGAGC GAACCAATCA 34542 |||||||| | |||| || || |||||||||| | ||| ||| ||||||||| ||||||| || GACCCAAATC GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA 110 ATCTAAACCC AAAATCATTT ACCAATAATT GAACCATAAT AAAAAAAATA CAATGCGGAA 34602 | | | | ||| | | |||| | || || ||||| | |||| ||||||||| A--T--A--C -AAA--A--T -CCAACATTT CAA-TATAAT -GACGGAATA TAATGCGGAA 156 GACTTAAAAC TCATTAATGA AAATAGATT- AATAACTTCT AAAAACTCGA -TAC--TTAT 34658 ||||| |||| |||||||||| |||| ||| |||||||||| |||||||| | || |||| GACTT-AAAC TCATTAATGA AAATCAATTA AATAACTTCT AAAAACTCAA CAACTATTAT 215 TATTCCCAAA ATCTGGAAGT CATCACCACA AGAACATCTA TCCTCAAATT ACTAAATCTA 34718 ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||||| |||| TATCCCCAAA ATCTGGAAGT CATCATCACA AGAACATCTA TCCTCAAATT ACTAATTCTA 275 AGAGTATCTA AGAAGCTAAA ATAAATAAAC AGCTAGTCCG TGCCAGAACT TCAAGGAATC 34778 |||||||||| |||||| | |||| |||| ||||||||| |||| ||||| |||||| ||| AGAGTATCTA GAAAGCTAGA ATAACTAAAA AGCTAGTCCA TGCCGGAACT TCAAGGCATC 335 AAGACGTGAA GAAGAAGATC CAGTCCAAGC TAGAAACAAT AGCTCACCCT GAATTCTGGT 34838 ||||| |||| |||||||||| |||||||||| ||||| | | ||||||| || ||| || ||| AAGACATGAA GAAGAAGATC CAGTCCAAGC TAGAAGCGTT AGCTCACACT GAAATCCGGT 395 GTGATGAAGA CTGACTAGAG TTGAGGACGA GTTGAAGACG A 34879 | ||||||| ||| |||||| ||| || || |||||||||| | ATAATGAAGA CTGGCTAGAG TTGCGGTTGA GTTGAAGACG A 436 hqPGS_C08HBa0027D09.1+_SGN-E370357+ (34483 34879) ******************************************************************************** EST sequence 31 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 33703 to 37201): Exon 1 34655 34879 ( 225 n); cDNA 29 252 ( 224 n); score: 0.911 PPA cDNA 12 1 MATCH C08HBa0027D09.1+ SGN-E373116+ 0.911 225 0.753 C PGS_C08HBa0027D09.1+_SGN-E373116+ (34655 34879) Alignment (genomic DNA sequence = upper lines): TTATTATTCC CAAAATCTGG AAGTCATCAC CACAAGAACA TCTATCCTCA AATTACTAAA 34714 ||||||| || |||||||||| ||||||||| |||||||||| |||| | ||| |||||||||| TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTA-CTTCA AATTACTAAA 87 TCTAAGAGTA TCTAAGAAGC TAAAATAAAT AAACAGCTAG TCCGTGCCAG AACTTCAAGG 34774 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||| | |||||||||| TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 147 AATCAAGACG TGAAGAAGAA GATCCAGTCC AAGCTAGAAA CAATAGCTCA CCCTGAATTC 34834 |||||||| |||||||||| |||||||||| ||||||||| | ||||||| ||||||| || CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 207 TGGTGTGATG AAGACTGACT AGAGTTGAGG ACGAGTTGAA GACGA 34879 | ||| ||| ||||||| || ||||||| || |||||||| ||||| CGATGTAATG AAGACTGGCT AGAGTTGCGG TTGAGTTGAA GACGA 252 hqPGS_C08HBa0027D09.1+_SGN-E373116+ (34655 34879) ******************************************************************************** EST sequence 218 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 33683 to 37181): Exon 1 34655 34879 ( 225 n); cDNA 30 253 ( 224 n); score: 0.911 PPA cDNA 13 1 MATCH C08HBa0027D09.1+ SGN-E373117- 0.911 225 0.753 C PGS_C08HBa0027D09.1+_SGN-E373117- (34655 34879) Alignment (genomic DNA sequence = upper lines): TTATTATTCC CAAAATCTGG AAGTCATCAC CACAAGAACA TCTATCCTCA AATTACTAAA 34714 ||||||| || |||||||||| ||||||||| |||||||||| |||| | ||| |||||||||| TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTA-CTTCA AATTACTAAA 88 TCTAAGAGTA TCTAAGAAGC TAAAATAAAT AAACAGCTAG TCCGTGCCAG AACTTCAAGG 34774 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||| | |||||||||| TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 148 AATCAAGACG TGAAGAAGAA GATCCAGTCC AAGCTAGAAA CAATAGCTCA CCCTGAATTC 34834 |||||||| |||||||||| |||||||||| ||||||||| | ||||||| ||||||| || CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 208 TGGTGTGATG AAGACTGACT AGAGTTGAGG ACGAGTTGAA GACGA 34879 | ||| ||| ||||||| || ||||||| || |||||||| ||||| CGATGTAATG AAGACTGGCT AGAGTTGCGG TTGAGTTGAA GACGA 253 hqPGS_C08HBa0027D09.1+_SGN-E373117- (34655 34879) ******************************************************************************** EST sequence 3 +strand 605 n (File: SGN-E347579+) 1 AATAAAGAAA ATAGAAAGAA CAAGAGAGAG AGGAAGAATC GAACGAGAAG GGAGAAACAA 61 AGCTTGGAGA AAAATTTGCT TGCTTGATCA CTAATCTTCG GTGGAGGTAG GTTATGGTTT 121 TCATGCTTTC ATAGTAAACT CTTAATAGAG AATGATATGT ATTGGTAGTA TTGTAAACCC 181 TGCTATATGC TTAATTGTAT GCATGCATGA ACGTGATTAT ATAATTGTGA TTATATTAAG 241 CATGATGAAG TTATTGAATC CCAAATCTTG ATAAAAATCT AATCTCTTAT TAATGATGAT 301 GCCTTGGTAT AGAAGAAGGC TTGATGAATA AAAGTAATGG GATTGATGAT GCCTTGGTAT 361 AGAGAAGGCC TGATGATTTA CAGAATGATA TTAGTGGATC GGAGTGTCAC GTACCGACAC 421 ATGCAGGGGA TCGGGTGTCA CGAACCGACA CGTAGAATTA GGGGATCGGG TGTCACGAAC 481 TGGCACGTAG AATTAGGGGA TCGGGTGTCA CGAACCGGCA CGTAGATTAG GGGATCAGGT 541 GTCACGAACC GACACGTAGA ATTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGAATTAG 601 GGGAT Predicted gene structure (within gDNA segment 34181 to 38889): Exon 1 35531 35733 ( 203 n); cDNA 76 279 ( 204 n); score: 0.865 Intron 1 35734 35777 ( 44 n); Pd: 0.000 (s: 0.77), Pa: 0.000 (s: 0.76) Exon 2 35778 36109 ( 332 n); cDNA 280 605 ( 326 n); score: 0.866 MATCH C08HBa0027D09.1+ SGN-E347579+ 0.865 535 0.884 C PGS_C08HBa0027D09.1+_SGN-E347579+ (35531 35733,35778 36109) Alignment (genomic DNA sequence = upper lines): TTGCTTGCTT GATCACAATT CTTTGGTGGA GGTAGGTTAT GGTTTTTATG CTATTCGTAG 35590 |||||||||| |||||| | | ||| |||||| |||||||||| |||||| ||| || ||| ||| TTGCTTGCTT GATCACTAAT CTTCGGTGGA GGTAGGTTAT GGTTTTCATG CT-TTCATAG 134 TAAACTCTTA ATAGCGAATG ATATGTATTG GGTAGTGTTG TAAACCCTTC TATATGCTTA 35650 |||||||||| |||| ||||| ||||||||| |||||| ||| |||||||| | |||||||||| TAAACTCTTA ATAGAGAATG ATATGTATT- GGTAGTATTG TAAACCCTGC TATATGCTTA 193 ATTGTGTGCT TGCATG-ATG TGTTTATATA ATTGTGA-TA AAATAAGCAT GATGAAGCTA 35708 ||||| ||| |||||| | | || ||||||| ||||||| || | ||||||| ||||||| || ATTGTATGCA TGCATGAACG TGATTATATA ATTGTGATTA TATTAAGCAT GATGAAGTTA 253 TTGAATCCTA AATCTTGA-A AACCTCTTTG TTAATGATGA TGCCTTAGTA TGAAAGAAGG 35767 |||||||| | |||||||| | || || TTGAATCCCA AATCTTGATA AAAATC.... .......... .......... .......... 279 CTTGATGAAC TAAAGTAATG AGATTGATGA TGCCTTGGTA TAAGAGAAGT CTTGATGAAC 35827 ||| | | | |||||| |||||||||| || ||||| ||||||||| .......... TAATCTCTTA TTAATGATGA TGCCTTGGTA TAGAAGAAGG CTTGATGAAT 329 TAAAGTAATG AGATTGATGA TGCCTTGGTG TAAAAGAAGG CTTGATGAAT TAACAGAATG 35887 ||||||||| ||||||||| ||||||||| | | |||||| | ||||| || | |||||||| AAAAGTAATG GGATTGATGA TGCCTTGGTA T-AGAGAAGG CCTGATG-AT TTACAGAATG 387 AGACTAGTGG AGCGG-GTGT CACGAATCGA CACGTAAAAT TAGGGGATCG GGTGTCACGA 35946 | | |||||| | ||| |||| |||| | ||| ||| | ||||||||| |||||||||| ATATTAGTGG ATCGGAGTGT CACGTACCGA CAC----ATG CAGGGGATCG GGTGTCACGA 443 AACGACACGT AGAATTAGGG GATCGGGTGT CACGAACCGA CACGTAGAAT TAGGGGATCA 36006 | |||||||| |||||||||| |||||||||| ||||||| | |||||||||| ||||||||| ACCGACACGT AGAATTAGGG GATCGGGTGT CACGAACTGG CACGTAGAAT TAGGGGATCG 503 GGTGTCACGA ACCAACACGT AGAATTAGGG GATCGGGTGT CACGGACCGA CACGTAGAAT 36066 |||||||||| ||| ||||| || ||||||| |||| ||||| |||| ||||| |||||||||| GGTGTCACGA ACCGGCACGT AG-ATTAGGG GATCAGGTGT CACGAACCGA CACGTAGAAT 562 TAGGGGATCG GGTGTCATGA ACCGACACGT AGAATTAGGG GAT 36109 |||||||||| ||||||| || |||||||||| |||||||||| ||| TAGGGGATCG GGTGTCACGA ACCGACACGT AGAATTAGGG GAT 605 hqPGS_C08HBa0027D09.1+_SGN-E347579+ (35531 35733,35778 36109) ******************************************************************************** EST sequence 42 +strand 542 n (File: SGN-E252199+) 1 CTTGATGAGA ATTTGTCTTA TGAGGAGGAG CCTGTTGCCA TTTTAGATAG AGAAGTCCGC 61 AAATTGAGGT CAAGGGAGAT TGCATCTATC AAAGTTCAAT GGAAGAATCG ACCAGTTGAA 121 GAATCCACTT GGGAGAAGGA AGTTGATATG CGAGAAAGAT ACCCATACCT GTTTACAGAT 181 TCAGGTACTC CTTTTCGCCC TTGTTTTTCT TCTTGTGATC GTTCGGGGAC GAACGATGGG 241 TAAATTGGTA TCTATTGTAA CGACCTGTTT AGTCGTTTTG AGTAACAGAT TTTATTTCTG 301 GAAAAACTGA CTGAGACGAC GGATCCCACG ACGGACCGTC GAGGGGGTCT CGTTCCAAAA 361 CACTTAGAAT TCTGAAATTT GGGTACTGAA ATCGACTCTC TGAACTTCGT GACGGAATGG 421 CAGGACGGAC CGTCACAGGC GTGATGGGCC GTCACAGACC CTTGGTAAAA ATCTAGTCTC 481 TGAACTCTGT GACGGACGTG CAGGACGGAC CGTCACAGAC TGCGTAATCC CAGGCTGGGT 541 CG Predicted gene structure (within gDNA segment 31135 to 37000): Exon 1 34933 35240 ( 308 n); cDNA 256 540 ( 285 n); score: 0.789 MATCH C08HBa0027D09.1+ SGN-E252199+ 0.789 308 0.568 C PGS_C08HBa0027D09.1+_SGN-E252199+ (34933 35240) Alignment (genomic DNA sequence = upper lines): TGTAACGACT TGTTTAGTCG TTTTGAGCAG CAGATTTTA- TTCTGGAAAA ACTGTCTTGG 34991 ||||||||| |||||||||| ||||||| | ||||||||| |||||||||| |||| || | TGTAACGACC TGTTTAGTCG TTTTGAGTAA CAGATTTTAT TTCTGGAAAA ACTGACTGAG 315 TCGACGGATC CCACGACGGA CCGTCATGGG CATGACGGAC CGTCGAGGGG TTCTCGTTCC 35051 ||||||||| |||||||||| ||||| | | | || || ||||||||| ACGACGGATC CCACGACGGA CCGTC----G -A-G--GG-- --------GG -TCTCGTTCC 356 AAAACACTTA GAATTTCTGA AATTTGGGTA TTGAAATCGA CTCTCTGAAC TTCGTGACGA 35111 |||||||||| |||| ||||| |||||||||| ||||||||| |||||||||| ||||||||| AAAACACTTA GAAT-TCTGA AATTTGGGTA CTGAAATCGA CTCTCTGAAC TTCGTGACGG 415 CATGGCAGGA CGGACCATCG TGGGCACGAT GGACCGTCAC AGA-CCTTTC AAAGAATTGA 35170 ||||||||| |||||| || ||| ||| || ||||||| ||| |||| || ||| | AATGGCAGGA CGGACCGTCA CAGGCGTGAT GGGCCGTCAC AGACCCTTGG TAAAAATCTA 475 GGCTCTGAAC TCTGTGACGG AAGCAGCAGG ACGGACCGTT TCAGGCATGA CGGGCCGTCA 35230 | |||||||| |||||||||| | | ||||| ||||||||| ||| | || | | || GTCTCTGAAC TCTGTGACGG ACG-TGCAGG ACGGACCGTC ACAGAC-TG- C--GTAATCC 530 CAGACTGTGT 35240 ||| ||| || CAGGCTGGGT 540 hqPGS_C08HBa0027D09.1+_SGN-E252199+ (34933 35240) ******************************************************************************** EST sequence 158 +strand 717 n (File: SGN-E349726+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CATAGATTAG GGGATCGGGT 421 GTCACGAACC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG 481 GGGATCGGGT GTCACGAACC GACACGTAGA TTTAGGGGAT CAGGTGTCAC GAACCGACAC 541 GTAGATTTAG GGGATCGGAG TGTCACGTTC CGACACGTAG ATTTAGGGGA TCAGAGTATC 601 ACGTACCGAC ACAAGAAGAT TAATGAATAT GANGGAGCGG AATGTCACGT ACCGACACAA 661 GAGAAATAAA GACAATGAAT CTTGAAAGAT GTTATATACT CAATCTAATG AACATAA Predicted gene structure (within gDNA segment 32918 to 40748): Exon 1 35550 35813 ( 264 n); cDNA 4 276 ( 273 n); score: 0.799 Intron 1 35814 35863 ( 50 n); Pd: 0.000 (s: 0.94), Pa: 0.750 (s: 0.88) Exon 2 35864 36171 ( 308 n); cDNA 277 580 ( 304 n); score: 0.877 Intron 2 36172 36679 ( 508 n); Pd: 0.000 (s: 0.74), Pa: 0.478 (s: 0) Exon 3 36680 36690 ( 11 n); cDNA 581 591 ( 11 n); score: 0.909 MATCH C08HBa0027D09.1+ SGN-E349726+ 0.841 583 0.813 C PGS_C08HBa0027D09.1+_SGN-E349726+ (35550 35813,35864 36171,36680 36690) Alignment (genomic DNA sequence = upper lines): TCTTTGGTGG AGGTAGGTTA -TGGTT-T-T TATGCTATTC GTAGTAAACT CTTAATAGCG 35606 |||| ||||| |||||||||| || || | | || | ||||| |||||||||| |||||||| | TCTTCGGTGG AGGTAGGTTA TTGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG 63 AATGATATGT ATTGGGTAGT GTTGTAAACC CTTCTATATG CTTAATTGTG TGCTTGCATG 35666 |||||||||| ||| | || | ||||||||| || |||| || ||||||||| |||||||||| AATGATATGT ATT-GATAAT ATTGTAAACC CTGCTATGTG CTTAATTGTA TGCTTGCATG 122 -ATGTGTTTA TATAATTGTG ATAAAATAAG CATGATGAAG CTATTGAATC CTAAATCTTG 35725 |||| || ||||||||| || | ||||| |||||||||| ||||||||| | |||||||| AATGTAACTA TATAATTGTT ATTATATAAG CATGATGAAG TTATTGAATC CCAAATCTTG 182 --AAAACC-- -TCT-TTGTT AATGATGATG CCTTAGTATG AAAGAAGGCT TGATGAACTA 35779 |||||| ||| || || |||||||||| |||| ||| | |||||||| |||||||||| TAAAAACCTA ATCTCTTTTT AATGATGATG CCTTGGTAAG GGAGAAGGCT TGATGAACTA 242 AAGTAATGAG ATTGATGATG CCTTGGTATA AGAGAAGTCT TGATGAACTA AAGTAATGAG 35839 |||||||||| |||||||||| |||||||| ||| AAGTAATGAG ATTGATGATG CCTTGGTAAG GGAG...... .......... .......... 276 ATTGATGATG CCTTGGTGTA AAAGAAGGCT TGATGAATTA ACAGAATGAG ACTAGTGGAG 35899 |||||| ||||||||| | |||||||| | ||| ||| .......... .......... ....AAGGCT TGATGAATTG ATAGAATGAG ATTAGGGGAT 312 CGGGTGTCAC GAATCGACAC GTAAAATTAG GGGATCGGGT GTCACGAAAC GACACGTAGA 35959 |||||||||| ||| ||||| ||| |||||| |||||||||| ||||| || | ||||||||| CGGGTGTCAC GAACTGACAC GTAGAATTAG GGGATCGGGT GTCACAAACC GACACGTAG- 371 ATTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGAATTAG GGGATCAGGT GTCACGAACC 36019 |||| ||||| | |||||||| ||||| |||| ||| ||||| |||||| ||| |||||||||| ATTAAGGGAT CAGGTGTCAC GAACCAACAC ATAG-ATTAG GGGATCGGGT GTCACGAACC 430 AACACGTAGA ATTAGGGGAT CGGGTGTCAC GGACCGACAC GTAGAATTAG GGGATCGGGT 36079 ||||||||| ||||||||| |||||||||| | |||||||| ||||| |||| |||||||||| GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG GGGATCGGGT 490 GTCATGAACC GACACGTAGA ATTAGGGGAT CGGAGTGTCA CGTTCTGACA TATAGTAGTA 36139 |||| ||||| |||||||||| ||||||||| | | |||||| || | |||| ||| || GTCACGAACC GACACGTAGA TTTAGGGGAT CAG-GTGTCA CGAACCGACA CGTAGATTTA 549 GGGGAGCGGA GTGTCACGTA CCGACACAAG AGGAATAAAG ATAATGAGTC TTGAAATTAT 36199 ||||| |||| ||||||||| ||||||| || GGGGATCGGA GTGTCACGTT CCGACAC-GT AG........ .......... .......... 580 GTTAACAAAT TCGAATGAAA AGAACCTATA TCCCAAATGA GTATGGTGTG GAGACTGGAG 36259 .......... .......... .......... .......... .......... .......... 580 TTCTCATAGG TGTGTTTGAT GTGGTTACAC ATGATTTGTG AACTTGTTGC TTTCACATGT 36319 .......... .......... .......... .......... .......... .......... 580 TGAGTATTGT AGTTGATTTT ATGATATTAT CTGATATATA CTATTTTCTA TTTTGAGTTG 36379 .......... .......... .......... .......... .......... .......... 580 GCCGATGATA TCTACTAAGT ACCCGTGTTT TGTACTGACC CCTACTTGTA TGTTTTCTTT 36439 .......... .......... .......... .......... .......... .......... 580 TTGTTAATTG TGGAGTGCAG CAAACGTACC GTCATCTTCA ACTCAACCGA AACTCTAGCC 36499 .......... .......... .......... .......... .......... .......... 580 AGTCTTCATT ACACCGGATT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC TGGATCTTCT 36559 .......... .......... .......... .......... .......... .......... 580 TCTTCACGTC TTGATGCCTT GAACTTCCGG CATGGACTAG CTTTTTTACT TATTTTAGCT 36619 .......... .......... .......... .......... .......... .......... 580 TCTTCGATAC TCTTAGATTA GTAATGTGAG GATAGATGTT CTTGTGATGA TGACTTCCAG 36679 .......... .......... .......... .......... .......... .......... 580 ATTTTGGGGA T 36690 |||| ||||| | ATTTAGGGGA T 591 hqPGS_C08HBa0027D09.1+_SGN-E349726+ (35550 35813,35864 36171) ******************************************************************************** EST sequence 134 +strand 402 n (File: SGN-E357559+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CA Predicted gene structure (within gDNA segment 32918 to 37598): Exon 1 35550 35813 ( 264 n); cDNA 4 276 ( 273 n); score: 0.799 Intron 1 35814 35863 ( 50 n); Pd: 0.000 (s: 0.94), Pa: 0.750 (s: 0.88) Exon 2 35864 35989 ( 126 n); cDNA 277 401 ( 125 n); score: 0.889 MATCH C08HBa0027D09.1+ SGN-E357559+ 0.828 390 0.970 C PGS_C08HBa0027D09.1+_SGN-E357559+ (35550 35813,35864 35989) Alignment (genomic DNA sequence = upper lines): TCTTTGGTGG AGGTAGGTTA -TGGTT-T-T TATGCTATTC GTAGTAAACT CTTAATAGCG 35606 |||| ||||| |||||||||| || || | | || | ||||| |||||||||| |||||||| | TCTTCGGTGG AGGTAGGTTA TTGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG 63 AATGATATGT ATTGGGTAGT GTTGTAAACC CTTCTATATG CTTAATTGTG TGCTTGCATG 35666 |||||||||| ||| | || | ||||||||| || |||| || ||||||||| |||||||||| AATGATATGT ATT-GATAAT ATTGTAAACC CTGCTATGTG CTTAATTGTA TGCTTGCATG 122 -ATGTGTTTA TATAATTGTG ATAAAATAAG CATGATGAAG CTATTGAATC CTAAATCTTG 35725 |||| || ||||||||| || | ||||| |||||||||| ||||||||| | |||||||| AATGTAACTA TATAATTGTT ATTATATAAG CATGATGAAG TTATTGAATC CCAAATCTTG 182 --AAAACC-- -TCT-TTGTT AATGATGATG CCTTAGTATG AAAGAAGGCT TGATGAACTA 35779 |||||| ||| || || |||||||||| |||| ||| | |||||||| |||||||||| TAAAAACCTA ATCTCTTTTT AATGATGATG CCTTGGTAAG GGAGAAGGCT TGATGAACTA 242 AAGTAATGAG ATTGATGATG CCTTGGTATA AGAGAAGTCT TGATGAACTA AAGTAATGAG 35839 |||||||||| |||||||||| |||||||| ||| AAGTAATGAG ATTGATGATG CCTTGGTAAG GGAG...... .......... .......... 276 ATTGATGATG CCTTGGTGTA AAAGAAGGCT TGATGAATTA ACAGAATGAG ACTAGTGGAG 35899 |||||| ||||||||| | |||||||| | ||| ||| .......... .......... ....AAGGCT TGATGAATTG ATAGAATGAG ATTAGGGGAT 312 CGGGTGTCAC GAATCGACAC GTAAAATTAG GGGATCGGGT GTCACGAAAC GACACGTAGA 35959 |||||||||| ||| ||||| ||| |||||| |||||||||| ||||| || | ||||||||| CGGGTGTCAC GAACTGACAC GTAGAATTAG GGGATCGGGT GTCACAAACC GACACGTAG- 371 ATTAGGGGAT CGGGTGTCAC GAACCGACAC 35989 |||| ||||| | |||||||| ||||| |||| ATTAAGGGAT CAGGTGTCAC GAACCAACAC 401 hqPGS_C08HBa0027D09.1+_SGN-E357559+ (35550 35813,35864 35989) ******************************************************************************** EST sequence 232 -strand 686 n (File: SGN-E241789-) 1 TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAGGTTAG 61 GGGATCGGGT GTCACGAACC GACACGTAGT ATTAATGGAT CGGGTGTCAC GAACCGACAC 121 ATAGTATTAA TGGATCGGGT GTCACGAATC GGCACGTAGT ATTAGGAGAT CGGGTGTAAC 181 GAACCGACAC GTAGTATTAG GGGATCGGGT GTCACGAACC GACACGTAGC ATTAGGGGAT 241 CGGAGTATCA CGTTCCGACA CCACGATAGT AAAAAGAATG AATCTTGAAT TATGTTAATG 301 TACTCAATTT AATGAACCTG TTTCCCAAAT GAGTATGGTG TGGAGGCTTG AGTCCTCATA 361 GATGTTCTTG GGTTGTGCCC AATGGTTATG GTACTTGTTG TTGTCACCTG TTAAGTGTTA 421 TGGTTGATTT TATTTTATTA TTTGATATAT ATTGTTCTCT ATTCTGAGTT GGCCGATGAT 481 ATCTACTCAG TACTCGTGTT TGTACTGACC CCTACTTTTA TGTTTTCTTT TTGTTAATTG 541 TGGAGTGCAG CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAACC AGTCTTCATC 601 ACGTCAGATT TCAGGGTGAG CTATTGTTCC TAGCTCGGAC TGGATTCTCT CTCATTCATG 661 TCTTGATGTC CTTGAAGATC AGACAT Predicted gene structure (within gDNA segment 33505 to 38302): Exon 1 35836 36074 ( 239 n); cDNA 2 240 ( 239 n); score: 0.870 Intron 1 36075 36145 ( 71 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.76) Exon 2 36146 36592 ( 447 n); cDNA 241 686 ( 446 n); score: 0.813 MATCH C08HBa0027D09.1+ SGN-E241789- 0.833 686 1.000 C PGS_C08HBa0027D09.1+_SGN-E241789- (35836 36074,36146 36592) Alignment (genomic DNA sequence = upper lines): TGAGATTGAT GATGCCTTGG TGTAAAAGAA GGCTTGATGA ATTAACAGAA TGAGACTAGT 35895 || | |||| |||| ||||| | |||||||| |||||||||| | ||| |||| |||| ||| TGTTAATGAT GATGTCTTGG TATAAAAGAA GGCTTGATGA ACTAAAAGAA TGAGGTTAGG 61 GGAGCGGGTG TCACGAATCG ACACGTAAAA TTAGGGGATC GGGTGTCACG AAACGACACG 35955 ||| |||||| ||||||| || ||||||| | ||| ||||| |||||||||| || |||||| GGATCGGGTG TCACGAACCG ACACGTAGTA TTAATGGATC GGGTGTCACG AACCGACACA 121 TAGAATTAGG GGATCGGGTG TCACGAACCG ACACGTAGAA TTAGGGGATC AGGTGTCACG 36015 ||| |||| |||||||||| ||||||| || ||||||| | ||||| |||| ||||| ||| TAGTATTAAT GGATCGGGTG TCACGAATCG GCACGTAGTA TTAGGAGATC GGGTGTAACG 181 AACCAACACG TAGAATTAGG GGATCGGGTG TCACGGACCG ACACGTAGAA TTAGGGGATC 36075 |||| ||||| ||| |||||| |||||||||| ||||| |||| |||||||| | ||||||||| AACCGACACG TAGTATTAGG GGATCGGGTG TCACGAACCG ACACGTAGCA TTAGGGGAT. 240 GGGTGTCATG AACCGACACG TAGAATTAGG GGATCGGAGT GTCACGTTCT GACATATAGT 36135 .......... .......... .......... .......... .......... .......... 240 AGTAGGGGAG CGGAGTGTCA CGTACCGACA CAAGAGGAAT AAAGATAATG AGTCTTGAAA 36195 |||||| ||| ||| |||||| | | | | ||| | |||| | ||||| || .......... CGGAGTATCA CGTTCCGACA CCACGATAGT AAAAAGAATG AATCTTG-AA 289 TTATGTTAAC AAATTCGAAT GAAAAGAACC TATATCCCAA ATGAGTATGG TGTGGAGACT 36255 ||||||||| | || ||| || ||||| | | |||||| |||||||||| ||||||| || TTATGTTAAT GTACTC-AAT TTAATGAACC TGTTTCCCAA ATGAGTATGG TGTGGAGGCT 348 GGAGTTCTCA TAGGTGTGTT TGATGTGGTT ACACATGATT TGTGAACTTG TTGCTTTCAC 36315 |||| |||| ||| ||| | || || || | ||| || | ||||| ||| | |||| TGAGTCCTCA TAGATGTTCT TG-GGTTGTG CCCAATGGTT ATGGTACTTG TTGTTGTCAC 407 ATGTTGAGTA TTGTAGTTGA TTTTATGATA TTATCTGATA TATACTATTT TCTATTTTGA 36375 |||| ||| || | ||||| |||||| || |||| ||||| |||| | || |||||| ||| CTGTTAAGTG TTATGGTTGA TTTTATTTTA TTATTTGATA TATATTGTTC TCTATTCTGA 467 GTTGGCCGAT GATATCTACT AAGTACCCGT GTTTTGTACT GACCCCTACT TGTATGTTTT 36435 |||||||||| |||||||||| ||||| ||| | |||||||| |||||||||| | |||||||| GTTGGCCGAT GATATCTACT CAGTACTCGT G-TTTGTACT GACCCCTACT TTTATGTTTT 526 CTTTTTGTTA ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA CCGAAACTCT 36495 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| CTTTTTGTTA ATTGTGGAGT GCAGCAAACG TACCGTCGTC TTCAACTCAA CCGCAACTCT 586 AGCCAGTCTT CATTACACCG GATTTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGA-T 36554 | |||||||| ||| || | |||||||||| ||||||| || | |||||| |||||||| | AACCAGTCTT CATCACGTCA GATTTCAGGG TGAGCTATTG TTCCTAGCTC GGACTGGATT 646 CT-TCTTCTT CACGTCTTGA TG-CCTTGAA CTTCCGGCAT 36592 || ||| || || ||||||| || ||||||| || | ||| CTCTCTCATT CATGTCTTGA TGTCCTTGAA GATCAGACAT 686 hqPGS_C08HBa0027D09.1+_SGN-E241789- (35836 36074,36146 36592) ******************************************************************************** EST sequence 324 -strand 730 n (File: SGN-E546506-) 1 GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 61 AATGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATGA GGATCGGAGT GCCACGTTCC 121 GGCACCAGGA TAGAAATAGA GGATCGGAGT GTCACGTACC GACACAAGAG GAAGAAAGAT 181 AATGAATCTT GAAAGATAAT GAATATACTC AATCTAATGA ACTTAATTCC CAAATGAGTA 241 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACTCGGTTGT AGTTATTGAT GAATTCATGG 301 TGTTATTGCT ACATGTTGAG TATTGTAGTT GATTTACATT ATTATTGATA TATACTGTTC 361 CCTATTTTGA GTTGGCCGAT GATATCTACT CAGTACGTGT GGTTGTACTG ACCCCTACTT 421 TCATGTTTTC CTCTTTGTTA TTTGTGTAAT GCAGCAAACG TTCCGTCAAC TTCAACTCAA 481 CAGTAGATCT AGCCAGTCTT CACTTCATCG GAAAATTCAG GGTGAGCTAA TGCGTCTAGC 541 TTGGACTGGG TCTTCTTCTT CAAGTCTTGA TGCCTTGAAT TTCCGGCATG GACTAGCTTT 601 TTAGTTATTT TGTTCTTAGA CATTCCTAGT TAAGTAATTT GAGATAGATG TTCTTGTGAT 661 GATGACTTCC AGATTTTGGG GATAATAATA ATAGTATTGA ATTGTTTTTA TTAAAAAAAA 721 AAAAAAAAAA Predicted gene structure (within gDNA segment 32147 to 37751): Exon 1 36096 36694 ( 599 n); cDNA 93 687 ( 595 n); score: 0.797 PPA cDNA 713 730 MATCH C08HBa0027D09.1+ SGN-E546506- 0.797 599 0.821 C PGS_C08HBa0027D09.1+_SGN-E546506- (36096 36694) Alignment (genomic DNA sequence = upper lines): TAGAATTAGG GGATCGGAGT GTCACGTT-C TG-A-CA-TA TAGTAGTAGG GGAGCGGAGT 36151 ||||| | | |||||||||| | |||||| | | | || | ||| | ||| ||| |||||| TAGAA-T-GA GGATCGGAGT GCCACGTTCC GGCACCAGGA TAGAAATAGA GGATCGGAGT 150 GTCACGTACC GACACAAGAG GAATAAAGAT AATGAGTCTT GAAATTATGT TAACAAATTC 36211 |||||||||| |||||||||| ||| |||||| ||||| |||| |||| | || | | || GTCACGTACC GACACAAGAG GAAGAAAGAT AATGAATCTT GAAAGATAAT GAATATACTC 210 GAATGAAAAG AACCTATATC CCAAATGAGT ATGGTGTGGA GACTGGAGTT CTCATAGGTG 36271 ||| || | ||| || || |||||||||| ||||| | || | || |||| ||||| ||| -AATCTAATG AACTTAATTC CCAAATGAGT ATGGTATTGA GGCTTGAGTC CTCATGTGTG 269 -TGTTTGATG TGGTTACACA TG-ATTTGTG AACTTGTTGC TTTCACATGT TGAGTATTGT 36329 | | || | |||| | || ||| || || |||| | |||||| |||||||||| AACTCGGTTG TAGTTATTGA TGAATTCATG GTGTTATTGC --T-ACATGT TGAGTATTGT 326 AGTTGATTTT ATGATATTAT CTGATATATA CTATTTTCTA TTTTGAGTTG GCCGATGATA 36389 |||||| ||| | |||||| ||||||||| || || ||| |||||||||| |||||||||| AGTTGA-TTT ACATTATTAT -TGATATATA CTGTTCCCTA TTTTGAGTTG GCCGATGATA 384 TCTACTAAGT ACCCGTGTTT TGTACTGACC CCTACTTGTA TGTTTT-CTT TTTGTTAATT 36448 |||||| ||| || ||| | |||||||||| ||||||| | |||||| || ||||||| || TCTACTCAGT ACGTGTG-GT TGTACTGACC CCTACTTTCA TGTTTTCCTC TTTGTTATTT 443 GTGGAGTGCA GCAAACGTAC CGTCATCTTC AACTCAACCG AAACTCTAGC CAGTCTTCAT 36508 ||| | |||| |||||||| | ||||| |||| |||||||| | | |||||| ||||||||| GTGTAATGCA GCAAACGTTC CGTCAACTTC AACTCAACAG TAGATCTAGC CAGTCTTCAC 503 TACACCGG-- ATTTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAC 36566 | || ||| | |||||||| |||||||||| ||||||||| |||||| ||| ||||||||| TTCATCGGAA AATTCAGGGT GAGCTAATGC GTCTAGCTTG GACTGGGTCT TCTTCTTCAA 563 GTCTTGATGC CTTGAACTTC CGGCATGGAC TAGCTTTTTT ACTTATTTTA GCTTCTTCGA 36626 |||||||||| |||||| ||| |||||||||| |||| ||||| | ||||||| | ||||| || GTCTTGATGC CTTGAATTTC CGGCATGGAC TAGC-TTTTT AGTTATTTT- G-TTCTTAGA 620 TACTCTTAGA TTAGTAATGT GAGGATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG 36686 | || ||| | |||||| | || ||||||| |||||||||| |||||||||| |||||||||| CATTCCTAGT TAAGTAATTT GA-GATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG 679 GGATATTA 36694 ||||| || GGATAATA 687 hqPGS_C08HBa0027D09.1+_SGN-E546506- (36096 36694) ******************************************************************************** EST sequence 109 +strand 481 n (File: SGN-E246710+) 1 CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 61 TGAATATTGA GGGAGCGGAG TGTCACGTAC CGACACAAGA GAAATAAAGA TAATGAATCT 121 TGAAAGATGT TAATATACTC AATCTAATGA ACATGATTCC CAAATGAGTA TGGTATTGAG 181 GCTTGAGTCC TCATGTGTGA ACTTGACGGT AATTGTTAAT GATATAGTAT TTGTTGTTGC 241 TACATGTTGA GTATCATAGT TGATTTTATG ATATTACTTG GTATATATAT TGATTTCTAT 301 TTTGAGTTGG CCGATGATAT CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT 361 GTTCTCTTCT TGTTTATTTG TGGAGTGCAG CAAACGTGCC ATCGTGTTCA ACTCAACAGT 421 AATTCAAGCC AGTCTTACTA CATCGGAAAT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC 481 T Predicted gene structure (within gDNA segment 34841 to 37160): Exon 1 36012 36079 ( 68 n); cDNA 1 70 ( 70 n); score: 0.691 Intron 1 36080 36140 ( 61 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.96) Exon 2 36141 36550 ( 410 n); cDNA 71 481 ( 411 n); score: 0.811 MATCH C08HBa0027D09.1+ SGN-E246710+ 0.794 478 0.994 C PGS_C08HBa0027D09.1+_SGN-E246710+ (36012 36079,36141 36550) Alignment (genomic DNA sequence = upper lines): CACGAACCAA CACGTAGAAT TAGGGGATCG G-GTGTCACG GACCGACAC- GTAGAATTAG 36069 ||| |||| | || |||| | |||||||||| | |||||||| |||||||| || |||| CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 60 GGGATCGGGT GTCATGAACC GACACGTAGA ATTAGGGGAT CGGAGTGTCA CGTTCTGACA 36129 | || | TGAATATTGA .......... .......... .......... .......... .......... 70 TATAGTAGTA GGGGAGCGGA GTGTCACGTA CCGACACAAG AGGAATAAAG ATAATGAGTC 36189 ||||||||| |||||||||| |||||||||| || ||||||| ||||||| || .......... .GGGAGCGGA GTGTCACGTA CCGACACAAG AGAAATAAAG ATAATGAATC 119 TTGAAATTAT GTTAACAAAT TCGAATGAAA AGAACCTATA TCCCAAATGA GTATGGTGTG 36249 |||||| || ||||| | | || ||| || |||| | |||||||||| ||||||| | TTGAAA-GAT GTTAATATAC TC-AATCTAA TGAACATGAT TCCCAAATGA GTATGGTATT 177 GAGACTGGAG TTCTCATAGG TGTGTTTGAT G-TGGTTACA CATGATTTGT GAACTTGTTG 36308 ||| || ||| | ||||| | || |||| | | || ||||| | | | |||||| GAGGCTTGAG TCCTCATGTG TGAACTTGAC GGTAATTGTT AATGATATA- GTATTTGTTG 236 CTTTCACATG TTGAGTATTG TAGTTGATTT TATGATATTA -TCTG-ATAT ATACTATTTT 36366 | ||||| |||||||| |||||||||| |||||||||| | | |||| ||| | ||| TTGCTACATG TTGAGTATCA TAGTTGATTT TATGATATTA CTTGGTATAT ATATTGATTT 296 CTATTTTGAG TTGGCCGATG ATATCTACTA AGTACCCGTG TTTTGTACTG ACCCCTACTT 36426 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CTATTTTGAG TTGGCCGATG ATATCTACTC AGTACCCGTG TTTTGTACTG ACCCCTACTT 356 GTATGTTTTC TTTTTG-TTA ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA 36485 |||||| || || ||| ||| ||||||||| |||||||||| | || || | |||||||||| TTATGTTCTC TTCTTGTTTA TTTGTGGAGT GCAGCAAACG TGCCATCGTG TTCAACTCAA 416 CCGAAACTCT AGCCAGTCTT CATTACACCG G-ATTTCAGG GTGAGCTAAT GCTTCTAGCT 36544 | | || || |||||||||| | |||| || | | |||||| |||||||||| |||||||||| CAGTAATTCA AGCCAGTCTT -ACTACATCG GAAATTCAGG GTGAGCTAAT GCTTCTAGCT 475 TGGACT 36550 |||||| TGGACT 481 hqPGS_C08HBa0027D09.1+_SGN-E246710+ (36141 36550) ******************************************************************************** EST sequence 67 +strand 729 n (File: SGN-E351546+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTCGAGTC AATTGGTATC 661 TAAGCGATAC GAATTGGTAT CTGACCATNC TCACTCTCTT GCCAGATGGG TAGAACTAGA 721 GCAACGACT Predicted gene structure (within gDNA segment 35777 to 39151): Exon 1 36377 37101 ( 725 n); cDNA 1 728 ( 728 n); score: 0.844 MATCH C08HBa0027D09.1+ SGN-E351546+ 0.844 725 0.995 C PGS_C08HBa0027D09.1+_SGN-E351546+ (36377 37101) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTA AGTACCCGTG TTTTGTACTG ACCCCTACTT GTATG-TTTT 36435 |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||| |||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 CTTTTTGTTA ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA CCGAAACTCT 36495 ||| ||| || ||||||||| |||||||||| | |||||||| ||| |||||| | | ||||| CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGTCTT CATTACACCG GAT-TTCAGG GTGAGCTAAT GCTTCTAGCT TGGACTGGAT 36554 |||||||||| | | |||||| ||| |||||| ||||||||| |||||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTTCTTCTTC ACGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTT-T T-T-TACTTA 36611 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||| | | | || || CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATT- 239 TTTTAGCTTC TTCGATACTC TTAG-ATTAG TAATGTGAGG ATAGATGTTC TTGTGATGAT 36670 |||||||||| || || |||| |||| ||||| || | | | | ||||||||| |||||||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG -TAGATGTTC TTGTGATGAT 298 GACTTCCAGA TTTTGGGGAT ATTAATTGAT AAGTTTTAGA AGTTGATTAT TGATTTCATT 36730 ||||||||| |||| |||| | |||| ||| | || ||| | |||| |||||| ||| GACTTCCAGG TTTT-GGGA- A-TAATAGAT GTTTAATAAT AGTAG-TTAT TGATTTTATT 354 AATGAGTTTA AGTCTTCCGC ATTATATTAT GTTATTATT- -GGTAAACGA TTGGGGTTTA 36788 |||||||||| |||||||||| |||| || | ||| |||| | || || |||||| AATGAGTTTA AGTCTTCCGC ATTACTTTCT GTTGCTATTA CATTGAAATG TTAAGGTTTA 414 GATTGGTTGG TTAGCTCACA TAGGAGGATA AATGTGGGTG CCACTCACAG CTC-GATTTG 36847 |||||||||| || ||||||| ||||||| || | |||||||| ||| | | | | | |||||| GATTGGTTGG TTCGCTCACA TAGGAGGGTA AGTGTGGGTG CCAGTGGCGG CCCGGATTTG 474 GGTCGTGAC- AAACTTGGTA TCAGAGCATT AGGTTCGTTG GTCTCATCAC ACAAGAATGA 36906 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GGTCGTGACA AAACTTGGTA TCAGAGCATT AGGTTCGTTG GTCTCATCAC ACAAGAACAA 534 GTCTAGTAGA GTCTTAAGGA ACGGTAGGGG GACGCCTTTA CTTTTCTTTG AGAGCCTATA 36966 |||||||||| |||||||||| |||||||||| ||||| |||| |||||| ||| |||| ||||| GTCTAGTAGA GTCTTAAGGA ACGGTAGGGG GACGCTTTTA CTTTTCCTTG AGAGGCTATA 594 AGACTTTAGG AAAACTCCAT TCTTTCTTTT CTTCTTTCGT GCTATTACTT GGATCCAATT 37026 |||||||||| |||||| || |||||| || ||||||||| |||| ||||| || ||||| AGACTTTAGG AAAACTTCAC TCTTTCATTC TTTCTTTCGT GCTACTACTT CGAGTCAATT 654 GGTATCTAGG TGATAAAAAT TGGTATCTGG CCATCTTCAT TCTATTTCGC AGATGGTTAG 37086 |||||||| | |||| ||| ||||||||| |||| ||| ||| || | | |||||| ||| GGTATCTAAG CGATACGAAT TGGTATCTGA CCATNCTCAC TCTCTTGC-C AGATGGGTAG 713 AACTAGAGCA ACAAC 37101 |||||||||| || || AACTAGAGCA ACGAC 728 hqPGS_C08HBa0027D09.1+_SGN-E351546+ (36377 37101) ******************************************************************************** EST sequence 124 +strand 655 n (File: SGN-E356696+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATANGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTGAGTCC AATTG Predicted gene structure (within gDNA segment 35777 to 38411): Exon 1 36377 37027 ( 651 n); cDNA 1 655 ( 655 n); score: 0.848 MATCH C08HBa0027D09.1+ SGN-E356696+ 0.848 651 0.994 C PGS_C08HBa0027D09.1+_SGN-E356696+ (36377 37027) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTA AGTACCCGTG TTTTGTACTG ACCCCTACTT GTATG-TTTT 36435 |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||| |||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 CTTTTTGTTA ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA CCGAAACTCT 36495 ||| |||||| ||||||||| |||||||||| | |||||||| ||| |||||| | | ||||| CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGTCTT CATTACACCG GAT-TTCAGG GTGAGCTAAT GCTTCTAGCT TGGACTGGAT 36554 |||||||||| | | |||||| ||| |||||| ||||||||| |||||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTTCTTCTTC ACGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTT-T T-T-TACTTA 36611 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||| | | | || || CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATT- 239 TTTTAGCTTC TTCGATACTC TTAG-ATTAG TAATGTGAGG ATAGATGTTC TTGTGATGAT 36670 |||||||||| || || |||| |||| ||||| || | | | | ||||||||| |||||||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG -TAGATGTTC TTGTGATGAT 298 GACTTCCAGA TTTTGGGGAT ATTAATTGAT AAGTTTTAGA AGTTGATTAT TGATTTCATT 36730 ||||||||| |||| |||| | |||| ||| | || ||| | |||| |||||| ||| GACTTCCAGG TTTT-GGGA- A-TAATAGAT GTTTAATAAT AGTAG-TTAT TGATTTTATT 354 AATGAGTTTA AGTCTTCCGC ATTATATTAT GTTATTATT- -GGTAAACGA TTGGGGTTTA 36788 |||||||||| |||||||||| |||| || | ||| |||| | || || |||||| AATGAGTTTA AGTCTTCCGC ATTACTTTCT GTTGCTATTA CATTGAAATG TTAAGGTTTA 414 GATTGGTTGG TTAGCTCACA TAGGAGGATA AATGTGGGTG CCACTCACAG CTC-GATTTG 36847 |||||||||| || ||||||| || |||| || | |||||||| ||| | | | | | |||||| GATTGGTTGG TTCGCTCACA TANGAGGGTA AGTGTGGGTG CCAGTGGCGG CCCGGATTTG 474 GGTCGTGAC- AAACTTGGTA TCAGAGCATT AGGTTCGTTG GTCTCATCAC ACAAGAATGA 36906 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GGTCGTGACA AAACTTGGTA TCAGAGCATT AGGTTCGTTG GTCTCATCAC ACAAGAACAA 534 GTCTAGTAGA GTCTTAAGGA ACGGTAGGGG GACGCCTTTA CTTTTCTTTG AGAGCCTATA 36966 |||||||||| |||||||||| |||||||||| ||||| |||| |||||| ||| |||| ||||| GTCTAGTAGA GTCTTAAGGA ACGGTAGGGG GACGCTTTTA CTTTTCCTTG AGAGGCTATA 594 AGACTTTAGG AAAACTCCAT TCTTTCTTTT CTTCTTTCGT GCTATTACTT GGATCCAATT 37026 |||||||||| |||||| || |||||| || ||||||||| |||| ||||| | ||||||| AGACTTTAGG AAAACTTCAC TCTTTCATTC TTTCTTTCGT GCTACTACTT GAGTCCAATT 654 G 37027 | G 655 hqPGS_C08HBa0027D09.1+_SGN-E356696+ (36377 37027) ******************************************************************************** EST sequence 114 +strand 580 n (File: SGN-E356206+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGGTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGGACGGTA NGGGGACGCT TTTACTTTTC Predicted gene structure (within gDNA segment 35777 to 37805): Exon 1 36377 36952 ( 576 n); cDNA 1 580 ( 580 n); score: 0.842 MATCH C08HBa0027D09.1+ SGN-E356206+ 0.842 576 0.993 C PGS_C08HBa0027D09.1+_SGN-E356206+ (36377 36952) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTA AGTACCCGTG TTTTGTACTG ACCCCTACTT GTATG-TTTT 36435 |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||| |||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 CTTTTTGTTA ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA CCGAAACTCT 36495 ||| |||||| ||||||||| |||||||||| | |||||||| ||| |||||| | | ||||| CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGTCTT CATTACACCG GAT-TTCAGG GTGAGCTAAT GCTTCTAGCT TGGACTGGAT 36554 |||||||||| | | |||||| ||| |||||| ||||||||| |||||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTTCTTCTTC ACGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTT-T T-T-TACTTA 36611 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||| | | | || || CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATT- 239 TTTTAGCTTC TTCGATACTC TTAG-ATTAG TAATGTGAGG ATAGATGTTC TTGTGATGAT 36670 |||||||||| || || |||| |||| ||||| || | | | | ||||||||| |||||||||| TTTTAGCTTC TTAGAAACTC TTAGAATTAG TAGTTTAAAG -TAGATGTTC TTGTGATGAT 298 GACTTCCAGA TTTTGGGGAT ATTAATTGAT AAGTTTTAGA AGTTGATTAT TGATTTCATT 36730 ||||||||| |||| |||| | |||| ||| | || ||| | |||| |||||| ||| GACTTCCAGG TTTT-GGGA- A-TAATAGAT GTTTAATAAT AGTAG-TTAT TGATTTTATT 354 AATGAGTTTA AGTCTTCCGC ATTATATTAT GTTATTATT- -GGTAAACGA TTGGGGTTTA 36788 |||||||||| |||||||||| |||| || | ||| |||| | || || |||||| AATGAGTTTA AGTCTTCCGC ATTACTTTCT GTTGCTATTA CATTGAAATG TTAAGGTTTA 414 GATTGGTTGG TTAGCTCACA TAGGAGGATA AATGTGGGTG CCACTCACAG CTC-GATTTG 36847 |||||||||| || ||||||| ||||||| || | |||||||| ||| | | | | | |||||| GATTGGTTGG TTCGCTCACA TAGGAGGGTA AGTGTGGGTG CCAGTGGCGG CCCGGATTTG 474 GGTCGTGAC- AAACTTGGTA TCAGAGCATT AGGTTCGTTG GTCTCATCAC ACAAGAATGA 36906 ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||||| | GGTCGTGACA AAACTTGGTA TCAGAGCATT AGGGTCGTTG GTCTCATCAC ACAAGAACAA 534 GTCTAGTAGA GTCTTAAGGA ACGGTAGGGG GACGCCTTTA CTTTTC 36952 |||||||||| ||||||||| |||||| ||| ||||| |||| |||||| GTCTAGTAGA GTCTTAAGGG ACGGTANGGG GACGCTTTTA CTTTTC 580 hqPGS_C08HBa0027D09.1+_SGN-E356206+ (36377 36952) ******************************************************************************** EST sequence 175 -strand 434 n (File: SGN-E222578-) 1 AAAAAAAAAA AAAAAAACTC GAGACTAGCA AGCCTCATCA CTGAAACTCC ATCTTGAAGC 61 TGGTAACACT CGAAGCTCTG CAAGCAAGTT TCCATCTCGA AGCCTTGAAG AAAGTCCCCA 121 TCTAGAAAGT TGTGGAGTGC AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCAAG 181 CCAGTCTTCG TCACACCGGA TCTTCAGGGT GAGCTAACGC GTCTAGCTTG GACTGGATCT 241 TCTCCTTCAT GTCTTGATGC CTTGAACCTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA 301 GCTTTTAGAA ACTCTTAGAA TTAGTAGTTT AAAGTAGATG TTCTTGTGAT GATGACTTCC 361 AGGTTTTGGG AATAATAGAT GTTGAATATT GATAGTTATT GAATTGGTTT TTATTAAAAA 421 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 33718 to 38682): Exon 1 35864 35875 ( 12 n); cDNA 100 111 ( 12 n); score: 0.833 Intron 1 35876 36428 ( 553 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 36429 36694 ( 266 n); cDNA 112 377 ( 266 n); score: 0.835 PPA cDNA 416 434 MATCH C08HBa0027D09.1+ SGN-E222578- 0.835 278 0.641 C PGS_C08HBa0027D09.1+_SGN-E222578- (35864 35875,36429 36694) Alignment (genomic DNA sequence = upper lines): AAGGCTTGAT GAATTAACAG AATGAGACTA GTGGAGCGGG TGTCACGAAT CGACACGTAA 35923 ||| ||||| || AAGCCTTGAA GA........ .......... .......... .......... .......... 111 AATTAGGGGA TCGGGTGTCA CGAAACGACA CGTAGAATTA GGGGATCGGG TGTCACGAAC 35983 .......... .......... .......... .......... .......... .......... 111 CGACACGTAG AATTAGGGGA TCAGGTGTCA CGAACCAACA CGTAGAATTA GGGGATCGGG 36043 .......... .......... .......... .......... .......... .......... 111 TGTCACGGAC CGACACGTAG AATTAGGGGA TCGGGTGTCA TGAACCGACA CGTAGAATTA 36103 .......... .......... .......... .......... .......... .......... 111 GGGGATCGGA GTGTCACGTT CTGACATATA GTAGTAGGGG AGCGGAGTGT CACGTACCGA 36163 .......... .......... .......... .......... .......... .......... 111 CACAAGAGGA ATAAAGATAA TGAGTCTTGA AATTATGTTA ACAAATTCGA ATGAAAAGAA 36223 .......... .......... .......... .......... .......... .......... 111 CCTATATCCC AAATGAGTAT GGTGTGGAGA CTGGAGTTCT CATAGGTGTG TTTGATGTGG 36283 .......... .......... .......... .......... .......... .......... 111 TTACACATGA TTTGTGAACT TGTTGCTTTC ACATGTTGAG TATTGTAGTT GATTTTATGA 36343 .......... .......... .......... .......... .......... .......... 111 TATTATCTGA TATATACTAT TTTCTATTTT GAGTTGGCCG ATGATATCTA CTAAGTACCC 36403 .......... .......... .......... .......... .......... .......... 111 GTGTTTTGTA CTGACCCCTA CTTGTATGTT TTCTTTTTGT TAATTGTGGA GTGCAGCAAA 36463 | || | | | | | ||||||| |||||||||| .......... .......... .....AAGTC CCCATCTAGA AAGTTGTGGA GTGCAGCAAA 146 CGTACCGTCA TCTTCAACTC AACCGAAACT CTAGCCAGTC TTCATTACAC CGGAT-TTCA 36522 ||| |||||| ||||| |||| ||| | |||| | |||||||| ||| | |||| ||||| |||| CGTGCCGTCA TCTTCGACTC AACAGTAACT CAAGCCAGTC TTCGTCACAC CGGATCTTCA 206 GGGTGAGCTA ATGCTTCTAG CTTGGACTGG ATCTTCTTCT TCACGTCTTG ATGCCTTGAA 36582 |||||||||| | || ||||| |||||||||| ||||||| || ||| |||||| |||||||||| GGGTGAGCTA ACGCGTCTAG CTTGGACTGG ATCTTCTCCT TCATGTCTTG ATGCCTTGAA 266 CTTCCGGCAT GGACTAGCTT TTTTACTTAT TTTAGCTTCT TCGATACTCT TAG-ATTAGT 36641 | |||||||| |||||||||| || | | |||||||| | | || ||||| ||| |||||| CCTCCGGCAT GGACTAGCTT CTTATGTATT TTTAGCTT-T TAGAAACTCT TAGAATTAGT 325 AATGTGAGGA TAGATGTTCT TGTGATGATG ACTTCCAGAT TTTGGGGATA TTA 36694 | | | | | |||||||||| |||||||||| |||||||| | |||||| ||| || AGTTTAAAG- TAGATGTTCT TGTGATGATG ACTTCCAGGT TTTGGGAATA ATA 377 hqPGS_C08HBa0027D09.1+_SGN-E222578- (36429 36694) ******************************************************************************** EST sequence 311 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 35289 to 38378): Exon 1 36457 37161 ( 705 n); cDNA 1 708 ( 708 n); score: 0.830 MATCH C08HBa0027D09.1+ SGN-E392027- 0.830 705 0.993 C PGS_C08HBa0027D09.1+_SGN-E392027- (36457 37161) Alignment (genomic DNA sequence = upper lines): CAGCAAACGT ACCGTCATCT TCAACTCAAC CGAAACTCTA GCCAGTCTTC ATTACACCGG 36516 |||||||||| || || | | |||||||||| | || || | ||||||||| | |||| ||| CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTT- ACTACATCGG 59 -ATTTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA CGTCTTGATG 36575 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAATTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA AGTCTTGATG 119 CCTTGAACTT CCGGCATGGA CTAGCTTTTT TACTTATTTT AGCTTCTTCG A-TACTCTTA 36634 |||||||||| |||||||||| ||||||| || | |||| ||||| || | | |||||||| CCTTGAACTT CCGGCATGGA CTAGCTTCTT ATGTATTTTT AGCTT-TTAG ACTACTCTTA 178 GATTAGTAAT GTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGGG-ATATT 36693 | ||||| || ||| ||| |||||||||| | |||||||| |||||||||| |||| ||| | GTTTAGTCAT TTGATCGTAG ATGTTCTTGT GGTGATGACT TCCAGATTTT GGGGAATAAT 238 AATTGATAAG TTTTAGAAGT TGAT-TATTG AT-T-TCATT AATGAGTTTA AGTCTTCCGC 36750 | || | | |||||||||| | || |||| | | | || |||||||||| |||||||| | AGATGTTGAA TTTTAGAAGT TAATGAATTG GTCTGTATTT AATGAGTTTA AGTCTTCCAC 298 ATTATATTAT GTT-AT-TAT TGGTAAACGA TTGGGGTTTA GATTGGTTGG TTAGCTCACA 36808 |||| || | ||| || | | | || || || ||| |||||||||| || ||||||| ATTACTTTCT GTTGATATTA TATTGAAATG TTAAGG-TTA GATTGGTTGG TTCGCTCACA 357 TAGGAGGATA AATGTGGGTG CCACTCACAG CTCGATTTGG GTCGTGACAA ACTTGGTATC 36868 ||||||| || | |||||||| ||| || || | || ||| | |||||||||| |||||||||| TAGGAGGGTA AGTGTGGGTG CCAGTCGCAA CCCGGTTTTG GTCGTGACAA ACTTGGTATC 417 AGAGCATTAG GTTCGTTGGT CTCATCACAC AAGAATGAGT CTAGTAGAGT CTTAAGGAAC 36928 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AGAGCATTAG GTTCGTTGGT CTCATCACAC AAGAACGAGT CTAGTAGAGT CTTAAGGAAC 477 GGTAGGGGGA CGCCTTTACT TTTCTTTGAG AGCCTATAAG ACTTTAGGAA AACTCCATTC 36988 |||||||||| ||||||||| |||| ||||| || ||||||| ||||| |||| || |||| GGTAGGGGGA TGCCTTTACT TTTCCTTGAG AGGCTATAAG ACTTTTGGAA AATTCCA--- 534 TTTCTTTTCT TCTTTCGTGC TATTACTTGG ATCCAATTGG TATCTAGGTG ATAAAAATTG 37048 ||| ||||| |||||||||| |||||||||| ||||||||| |||||||||| ||| |||||| -TTC-TTTCT TCTTTCGTGC TATTACTTGG GTCCAATTGG TATCTAGGTG ATACAAATTG 592 GTATCTGGCC ATCTTCATTC TATTTCGCAG ATGGTTAGAA CTAGAGCAAC -A--ACGAAT 37105 ||||||| || ||||||| || |||||||||| |||||||||| |||||||||| | ||| GTATCTGACC ATCTTCACTC TATTTCGCAG ATGGTTAGAA CTAGAGCAAC GACTACGCCA 652 GCGCCAACAC CAACATTGGC AAGACAAGAA GCGTCTGAGC CAGCCACTGG GGCTGT 37161 || |||||| || || ||| |||| | ||| |||||| |||||||||| |||||| GCATCAACAC CAGCACCGGC GGGACAGGGT GCGACTGAGC CAGCCACTGG GGCTGT 708 hqPGS_C08HBa0027D09.1+_SGN-E392027- (36457 37161) ******************************************************************************** EST sequence 172 -strand 679 n (File: SGN-E370357-) 1 TTGGAGGTGG TGTTGCCATG GTGGATTGGG GGAAAAATGG AATTGGACTT TGTAGGAGGA 61 GAAATGGGCA TTTACTTACA CAAATGGCCA CTATTTACAA GAAAACACAT CAGAAATTCG 121 AGGAAAATTC TGCATCCGTA GGCAAATTTG AAAAATTTTA CAAATGGCAG AGGTGTAATC 181 AATCAATAAT ATTTGGGTGA CAGCCGAATG ATTAATTGAC ACTCGAATAA AGCAAACGTA 241 CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA TTTCAGTGTG 301 AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC TTGAAGTTCC 361 GGCATGGACT AGCTTTTTAG TTATTCTAGC TTTCTAGATA CTCTTAGAAT TAGTAATTTG 421 AGGATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG GATAATAATA GTTGTTGAGT 481 TTTTAGAAGT TATTTAATTG ATTTTCATTA ATGAGTTTAA GTCTTCCGCA TTATATTCCG 541 TCATTATATT GAAATGTTGG ATTTTGTATT GGTTGGTTCG CTCACATAGG AGGGTAAGTG 601 TGGGTGCCAC TTGCGGCTCG ATTTGGGTCG TGACATTAAA GATTATCGAA TTCATAATAT 661 AATTGTAAGA AAAAAAAAA Predicted gene structure (within gDNA segment 32855 to 38778): Exon 1 36458 36857 ( 400 n); cDNA 231 635 ( 405 n); score: 0.861 PPA cDNA 667 679 MATCH C08HBa0027D09.1+ SGN-E370357- 0.861 400 0.589 C PGS_C08HBa0027D09.1+_SGN-E370357- (36458 36857) Alignment (genomic DNA sequence = upper lines): AGCAAACGTA CCGTCATCTT CAACTCAACC GAAACTCTAG CCAGTCTTCA TTACACCGGA 36517 |||||||||| ||||| |||| |||||||||| | |||||||| |||||||||| ||| |||||| AGCAAACGTA CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA 290 TTTCAGGGTG AGCTAATGCT TCTAGCTTGG ACTGGATCTT CTTCTTCACG TCTTGATGCC 36577 |||||| ||| |||||| ||| |||||||||| |||||||||| |||||||| | |||||||||| TTTCAGTGTG AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC 350 TTGAACTTCC GGCATGGACT AGCTTTTTTA CTTATTTTAG CTTCTTCGAT ACTCTTAG-A 36636 ||||| |||| |||||||||| ||| |||||| ||||| ||| ||| | ||| |||||||| | TTGAAGTTCC GGCATGGACT AGC-TTTTTA GTTATTCTAG CTTTCTAGAT ACTCTTAGAA 409 TTAGTAATGT GAGGATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GGAT-AT--T 36693 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||| || | TTAGTAATTT GAGGATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATAATAAT 469 AATTGATAAG -TTTTAGAAG TTGATT-ATT GA-TTTCATT AATGAGTTTA AGTCTTCCGC 36750 | ||| | || ||||||||| || || ||| || ||||||| |||||||||| |||||||||| AGTTGTTGAG TTTTTAGAAG TTATTTAATT GATTTTCATT AATGAGTTTA AGTCTTCCGC 529 ATTATATTAT GTTATTATTG GTAAACGATT GGGGTTTAGA TTGGTTGGTT AGCTCACATA 36810 |||||||| || ||||| ||| | || || ||| | |||||||||| ||||||||| ATTATATTCC GTCATTATAT TGAAATG-TT GGATTTTGTA TTGGTTGGTT CGCTCACATA 588 GGAGGATAAA TGTGGGTGCC ACTCACAGCT CGATTTGGGT CGTGACA 36857 ||||| ||| |||||||||| ||| | ||| |||||||||| ||||||| GGAGGGTAAG TGTGGGTGCC ACTTGCGGCT CGATTTGGGT CGTGACA 635 hqPGS_C08HBa0027D09.1+_SGN-E370357- (36458 36857) ******************************************************************************** EST sequence 34 +strand 299 n (File: SGN-E373117+) 1 TCTTCTAGCT TGTCCAAATA CTGTCGTAAT TTTGGCAAAC GTACCGTCGT CTTCAACTCA 61 ACCGCAACTC TAGCCAGTCT TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT 121 TGGACTGGAT CTTCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT 181 TATGTATTTT AGCTTCTTAG ATACTCTTAG ATTTAGTAAT TTGAAGTAGA TGTTCTTGTG 241 ATGATGACTT CCAGATTTTG GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 35240 to 37631): Exon 1 36460 36696 ( 237 n); cDNA 36 271 ( 236 n); score: 0.926 PPA cDNA 287 299 MATCH C08HBa0027D09.1+ SGN-E373117+ 0.926 237 0.793 C PGS_C08HBa0027D09.1+_SGN-E373117+ (36460 36696) Alignment (genomic DNA sequence = upper lines): CAAACGTACC GTCATCTTCA ACTCAACCGA AACTCTAGCC AGTCTTCATT ACACCGGATT 36519 |||||||||| ||| |||||| ||||||||| |||||||||| |||||||||| ||| |||||| CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGGATT 95 TCAGGGTGAG CTAATGCTTC TAGCTTGGAC TGGATCTTCT TCTTCACGTC TTGATGCCTT 36579 |||||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| |||||||||| TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTTCT TCTTCATGTC TTGATGCCTT 155 GAACTTCCGG CATGGACTAG CTTTTTTACT TATTTTAGCT TCTTCGATAC TCTTAGA-TT 36638 ||| |||||| |||||||||| | | |||| |||||||||| |||| ||||| ||||||| || GAAGTTCCGG CATGGACTAG C-TGTTTATG TATTTTAGCT TCTTAGATAC TCTTAGATTT 214 AGTAATGTGA GGATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATATTAAT 36696 |||||| ||| | ||||||| |||||||||| |||||||||| |||||||||| ||| |||| AGTAATTTGA AG-TAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAAT 271 hqPGS_C08HBa0027D09.1+_SGN-E373117+ (36460 36696) ******************************************************************************** EST sequence 215 -strand 299 n (File: SGN-E373116-) 1 CTCTTCTAGC TTGTCCAAAT ACTGTCGTAA TTTTGGCAAA CGTACCGTCG TCTTCAACTC 61 AACCGCAACT CTAGCCAGTC TTCATTACAT CGGATTTCAG GGTGAGCTAA CGCTTCTAGC 121 TTGGACTGGA TCTTCTTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTGT 181 TTATGTATTT TAGCTTCTTA GATACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT 241 GATGATGACT TCCAGATTTT GGGGATAATA ATAGTTGTTG AGTTTTTAGA AAAAAAAAA Predicted gene structure (within gDNA segment 35220 to 37611): Exon 1 36460 36696 ( 237 n); cDNA 37 272 ( 236 n); score: 0.926 PPA cDNA 288 299 MATCH C08HBa0027D09.1+ SGN-E373116- 0.926 237 0.793 C PGS_C08HBa0027D09.1+_SGN-E373116- (36460 36696) Alignment (genomic DNA sequence = upper lines): CAAACGTACC GTCATCTTCA ACTCAACCGA AACTCTAGCC AGTCTTCATT ACACCGGATT 36519 |||||||||| ||| |||||| ||||||||| |||||||||| |||||||||| ||| |||||| CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGGATT 96 TCAGGGTGAG CTAATGCTTC TAGCTTGGAC TGGATCTTCT TCTTCACGTC TTGATGCCTT 36579 |||||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| |||||||||| TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTTCT TCTTCATGTC TTGATGCCTT 156 GAACTTCCGG CATGGACTAG CTTTTTTACT TATTTTAGCT TCTTCGATAC TCTTAGA-TT 36638 ||| |||||| |||||||||| | | |||| |||||||||| |||| ||||| ||||||| || GAAGTTCCGG CATGGACTAG C-TGTTTATG TATTTTAGCT TCTTAGATAC TCTTAGATTT 215 AGTAATGTGA GGATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATATTAAT 36696 |||||| ||| | ||||||| |||||||||| |||||||||| |||||||||| ||| |||| AGTAATTTGA AG-TAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAAT 272 hqPGS_C08HBa0027D09.1+_SGN-E373116- (36460 36696) ******************************************************************************** EST sequence 327 -strand 265 n (File: SGN-E216150-) 1 AGTAACTCAA GCCAGTCCTA CTACATCGGA AATTCAGGGT GAGCTAATGC TTCTAGGTTT 61 GACTGGATCT TCTTCTTCAA GTCTTGATGC CTTGAACTTC CGGCATGGAC TAGCTTCGTA 121 TGTATTTTTA GCTTCTTAGA ATACTCTTAG TTTAGTAATT TTATGATAGA GGCTCTGGTG 181 ATGATGACTT CCAGATTTTG GGGAATGATA AGTTTTGAGT TATACAAGTT GATTATTGAT 241 TTTTATTAAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 35337 to 38692): Exon 1 36490 36726 ( 237 n); cDNA 4 242 ( 239 n); score: 0.833 PPA cDNA 248 265 MATCH C08HBa0027D09.1+ SGN-E216150- 0.833 237 0.894 C PGS_C08HBa0027D09.1+_SGN-E216150- (36490 36726) Alignment (genomic DNA sequence = upper lines): AACTCTAGCC AGTCTTCATT ACACCGG-AT TTCAGGGTGA GCTAATGCTT CTAGCTTGGA 36548 ||||| |||| |||| | | | ||| ||| | |||||||||| |||||||||| |||| || || AACTCAAGCC AGTCCT-ACT ACATCGGAAA TTCAGGGTGA GCTAATGCTT CTAGGTTTGA 62 CTGGATCTTC TTCTTCACGT CTTGATGCCT TGAACTTCCG GCATGGACTA GCTTTTTTAC 36608 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||| | CTGGATCTTC TTCTTCAAGT CTTGATGCCT TGAACTTCCG GCATGGACTA GCTTCGTATG 122 TTATTTTAGC TTCTTCG-AT ACTCTTAGAT TAGTAATGTG AGGATAGATG TTCTTGTGAT 36667 | ||||||| ||||| | || |||||||| | ||||||| | | |||||| | ||| ||||| TATTTTTAGC TTCTTAGAAT ACTCTTAGTT TAGTAATTTT ATGATAGAGG CTCTGGTGAT 182 GATGACTTCC AGATTTTGGG G-ATATTAAT TGATAAGTTT TAGAAGTTGA TTATTGATTT 36726 |||||||||| |||||||||| | || ||| | | |||| || ||||||| |||||||||| GATGACTTCC AGATTTTGGG GAATGATAAG TTTTGAGTTA TACAAGTTGA TTATTGATTT 242 hqPGS_C08HBa0027D09.1+_SGN-E216150- (36490 36726) ******************************************************************************** EST sequence 80 +strand 219 n (File: SGN-E298638+) 1 TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 61 ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTATTTT AGCTTCTTAG 121 ATACTCTTAG ATTTAGTAAT TTGAAGTACA TGTTCTTGTG ATGATGACTG CCAGATTTTG 181 GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 35824 to 37631): Exon 1 36505 36696 ( 192 n); cDNA 1 191 ( 191 n); score: 0.909 PPA cDNA 207 219 MATCH C08HBa0027D09.1+ SGN-E298638+ 0.909 192 0.877 C PGS_C08HBa0027D09.1+_SGN-E298638+ (36505 36696) Alignment (genomic DNA sequence = upper lines): TCATTACACC GGATTTCAGG GTGAGCTAAT GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 36564 |||||||| | |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 60 ACGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTTT TTACTTATTT TAGCTTCTTC 36624 | |||||||| |||||||| | |||||||||| |||||| | | ||| ||||| ||||||||| ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGC-TGT TTATGTATTT TAGCTTCTTA 119 GATACTCTTA GA-TTAGTAA TGTGAGGATA GATGTTCTTG TGATGATGAC TTCCAGATTT 36683 |||||||||| || ||||||| | ||| | || ||||||||| |||||||||| | |||||||| GATACTCTTA GATTTAGTAA TTTGAAG-TA CATGTTCTTG TGATGATGAC TGCCAGATTT 178 TGGGGATATT AAT 36696 |||||||| | ||| TGGGGATAAT AAT 191 hqPGS_C08HBa0027D09.1+_SGN-E298638+ (36505 36696) ******************************************************************************** EST sequence 52 +strand 402 n (File: SGN-E352844+) 1 GGAGTGTCTT AGGTGCCTTA AACACCTTCC TAAGACGCTA ATAAGAATCC CGAATCCTAA 61 AAAATATTTT CAAAACGACT TTTCTGTTTA AATTGTTTTG AGAATGAGTT TTCTTGATTT 121 TTCTTAAAAA TTAAGTGGCG ACTCCTAAAG TCGAAAAATA CTTTAAAATA AAACAAACTC 181 TTTTCGAAAA ATCACCTTTT TTCGATAAAA CAAAGCTTCT AGCTTGGACT GGATCTTCTT 241 CTTCATGTCT TGATGCCTTG AAGTTCCGGC ATGGACTAGC TGTTTATGTA TTTTAGCTTC 301 TTAGATACTC TTAGATTTAG TAATTCGAAG TAGATGTTCT TGTGATGATA ACTTCCAGAT 361 TTTGGGAAAT AATAGTTATT GAATTGGTTT TTATAAAAAA AA Predicted gene structure (within gDNA segment 33795 to 37657): Exon 1 35426 35435 ( 10 n); cDNA 206 215 ( 10 n); score: 0.900 Intron 1 35436 36535 (1100 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 36536 36687 ( 152 n); cDNA 216 366 ( 151 n); score: 0.905 MATCH C08HBa0027D09.1+ SGN-E352844+ 0.905 162 0.403 C PGS_C08HBa0027D09.1+_SGN-E352844+ (35426 35435,36536 36687) Alignment (genomic DNA sequence = upper lines): TAAAAGAAAG AGGGTTTGAA TAAGAAAAAT AGAAAGAACA GAGGAGAAAG AGAGAAACGA 35485 ||||| |||| TAAAACAAAG .......... .......... .......... .......... .......... 215 TCGAGAGAGG GGGAAAACGA AGAAGATAGC CAAGATTTTG AGGAATTGCT TGCTTGATCA 35545 .......... .......... .......... .......... .......... .......... 215 CAATTCTTTG GTGGAGGTAG GTTATGGTTT TTATGCTATT CGTAGTAAAC TCTTAATAGC 35605 .......... .......... .......... .......... .......... .......... 215 GAATGATATG TATTGGGTAG TGTTGTAAAC CCTTCTATAT GCTTAATTGT GTGCTTGCAT 35665 .......... .......... .......... .......... .......... .......... 215 GATGTGTTTA TATAATTGTG ATAAAATAAG CATGATGAAG CTATTGAATC CTAAATCTTG 35725 .......... .......... .......... .......... .......... .......... 215 AAAACCTCTT TGTTAATGAT GATGCCTTAG TATGAAAGAA GGCTTGATGA ACTAAAGTAA 35785 .......... .......... .......... .......... .......... .......... 215 TGAGATTGAT GATGCCTTGG TATAAGAGAA GTCTTGATGA ACTAAAGTAA TGAGATTGAT 35845 .......... .......... .......... .......... .......... .......... 215 GATGCCTTGG TGTAAAAGAA GGCTTGATGA ATTAACAGAA TGAGACTAGT GGAGCGGGTG 35905 .......... .......... .......... .......... .......... .......... 215 TCACGAATCG ACACGTAAAA TTAGGGGATC GGGTGTCACG AAACGACACG TAGAATTAGG 35965 .......... .......... .......... .......... .......... .......... 215 GGATCGGGTG TCACGAACCG ACACGTAGAA TTAGGGGATC AGGTGTCACG AACCAACACG 36025 .......... .......... .......... .......... .......... .......... 215 TAGAATTAGG GGATCGGGTG TCACGGACCG ACACGTAGAA TTAGGGGATC GGGTGTCATG 36085 .......... .......... .......... .......... .......... .......... 215 AACCGACACG TAGAATTAGG GGATCGGAGT GTCACGTTCT GACATATAGT AGTAGGGGAG 36145 .......... .......... .......... .......... .......... .......... 215 CGGAGTGTCA CGTACCGACA CAAGAGGAAT AAAGATAATG AGTCTTGAAA TTATGTTAAC 36205 .......... .......... .......... .......... .......... .......... 215 AAATTCGAAT GAAAAGAACC TATATCCCAA ATGAGTATGG TGTGGAGACT GGAGTTCTCA 36265 .......... .......... .......... .......... .......... .......... 215 TAGGTGTGTT TGATGTGGTT ACACATGATT TGTGAACTTG TTGCTTTCAC ATGTTGAGTA 36325 .......... .......... .......... .......... .......... .......... 215 TTGTAGTTGA TTTTATGATA TTATCTGATA TATACTATTT TCTATTTTGA GTTGGCCGAT 36385 .......... .......... .......... .......... .......... .......... 215 GATATCTACT AAGTACCCGT GTTTTGTACT GACCCCTACT TGTATGTTTT CTTTTTGTTA 36445 .......... .......... .......... .......... .......... .......... 215 ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA CCGAAACTCT AGCCAGTCTT 36505 .......... .......... .......... .......... .......... .......... 215 CATTACACCG GATTTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA 36565 |||||||||| |||||||||| |||||||||| .......... .......... .......... CTTCTAGCTT GGACTGGATC TTCTTCTTCA 245 CGTCTTGATG CCTTGAACTT CCGGCATGGA CTAGCTTTTT TACTTATTTT AGCTTCTTCG 36625 ||||||||| ||||||| || |||||||||| ||||| | || || |||||| |||||||| | TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGC-TGTT TATGTATTTT AGCTTCTTAG 304 ATACTCTTAG A-TTAGTAAT GTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT 36684 |||||||||| | |||||||| || | ||| |||||||||| |||||| ||| |||||||||| ATACTCTTAG ATTTAGTAAT TCGAAG-TAG ATGTTCTTGT GATGATAACT TCCAGATTTT 363 GGG 36687 ||| GGG 366 hqPGS_C08HBa0027D09.1+_SGN-E352844+ (36536 36687) ******************************************************************************** EST sequence 105 +strand 666 n (File: SGN-E368629+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTTA TGTCTTGATG CCTTGAAGTT TCGGCATGGA CTAACTGTGT TATGTATTTT 541 AGGCTCTTAG ATACTTCTAG ATTTAGTAAT TCGAAGTAGA TGTTCTTGTG ATGATAACTT 601 CCAGATTTTG GGAAATAATA GTTATTGAAT TGGTTTTTAT AAAAAAAAAA AAAAAAAAAA 661 AAAAAA Predicted gene structure (within gDNA segment 31345 to 37837): Exon 1 35426 35435 ( 10 n); cDNA 451 460 ( 10 n); score: 0.900 Intron 1 35436 36535 (1100 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 36536 36687 ( 152 n); cDNA 461 612 ( 152 n); score: 0.859 PPA cDNA 639 666 MATCH C08HBa0027D09.1+ SGN-E368629+ 0.859 162 0.243 C PGS_C08HBa0027D09.1+_SGN-E368629+ (35426 35435,36536 36687) Alignment (genomic DNA sequence = upper lines): TAAAAGAAAG AGGGTTTGAA TAAGAAAAAT AGAAAGAACA GAGGAGAAAG AGAGAAACGA 35485 ||||| |||| TAAAACAAAG .......... .......... .......... .......... .......... 460 TCGAGAGAGG GGGAAAACGA AGAAGATAGC CAAGATTTTG AGGAATTGCT TGCTTGATCA 35545 .......... .......... .......... .......... .......... .......... 460 CAATTCTTTG GTGGAGGTAG GTTATGGTTT TTATGCTATT CGTAGTAAAC TCTTAATAGC 35605 .......... .......... .......... .......... .......... .......... 460 GAATGATATG TATTGGGTAG TGTTGTAAAC CCTTCTATAT GCTTAATTGT GTGCTTGCAT 35665 .......... .......... .......... .......... .......... .......... 460 GATGTGTTTA TATAATTGTG ATAAAATAAG CATGATGAAG CTATTGAATC CTAAATCTTG 35725 .......... .......... .......... .......... .......... .......... 460 AAAACCTCTT TGTTAATGAT GATGCCTTAG TATGAAAGAA GGCTTGATGA ACTAAAGTAA 35785 .......... .......... .......... .......... .......... .......... 460 TGAGATTGAT GATGCCTTGG TATAAGAGAA GTCTTGATGA ACTAAAGTAA TGAGATTGAT 35845 .......... .......... .......... .......... .......... .......... 460 GATGCCTTGG TGTAAAAGAA GGCTTGATGA ATTAACAGAA TGAGACTAGT GGAGCGGGTG 35905 .......... .......... .......... .......... .......... .......... 460 TCACGAATCG ACACGTAAAA TTAGGGGATC GGGTGTCACG AAACGACACG TAGAATTAGG 35965 .......... .......... .......... .......... .......... .......... 460 GGATCGGGTG TCACGAACCG ACACGTAGAA TTAGGGGATC AGGTGTCACG AACCAACACG 36025 .......... .......... .......... .......... .......... .......... 460 TAGAATTAGG GGATCGGGTG TCACGGACCG ACACGTAGAA TTAGGGGATC GGGTGTCATG 36085 .......... .......... .......... .......... .......... .......... 460 AACCGACACG TAGAATTAGG GGATCGGAGT GTCACGTTCT GACATATAGT AGTAGGGGAG 36145 .......... .......... .......... .......... .......... .......... 460 CGGAGTGTCA CGTACCGACA CAAGAGGAAT AAAGATAATG AGTCTTGAAA TTATGTTAAC 36205 .......... .......... .......... .......... .......... .......... 460 AAATTCGAAT GAAAAGAACC TATATCCCAA ATGAGTATGG TGTGGAGACT GGAGTTCTCA 36265 .......... .......... .......... .......... .......... .......... 460 TAGGTGTGTT TGATGTGGTT ACACATGATT TGTGAACTTG TTGCTTTCAC ATGTTGAGTA 36325 .......... .......... .......... .......... .......... .......... 460 TTGTAGTTGA TTTTATGATA TTATCTGATA TATACTATTT TCTATTTTGA GTTGGCCGAT 36385 .......... .......... .......... .......... .......... .......... 460 GATATCTACT AAGTACCCGT GTTTTGTACT GACCCCTACT TGTATGTTTT CTTTTTGTTA 36445 .......... .......... .......... .......... .......... .......... 460 ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA CCGAAACTCT AGCCAGTCTT 36505 .......... .......... .......... .......... .......... .......... 460 CATTACACCG GATTTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA 36565 |||||||||| |||||||||| |||||||| | .......... .......... .......... CTTCTAGCTT GGACTGGATC TTCTTCTTTA 490 CGTCTTGATG CCTTGAACTT CCGGCATGGA CTAGCTTTTT TACTTATTTT AGCTTCTTCG 36625 ||||||||| ||||||| || ||||||||| ||| || | | || |||||| || |||| | TGTCTTGATG CCTTGAAGTT TCGGCATGGA CTAACTGTGT TATGTATTTT AGGCTCTTAG 550 ATACTCTTAG A-TTAGTAAT GTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT 36684 ||||| ||| | |||||||| || | ||| |||||||||| |||||| ||| |||||||||| ATACTTCTAG ATTTAGTAAT TCGAAG-TAG ATGTTCTTGT GATGATAACT TCCAGATTTT 609 GGG 36687 ||| GGG 612 hqPGS_C08HBa0027D09.1+_SGN-E368629+ (36536 36687) ******************************************************************************** EST sequence 97 +strand 620 n (File: SGN-E238551+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTCA TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA 541 GCTTCTTAGA TACTCTTAGA TTTAGTAATT CGAAGTAGAT GTTCTTGTGA TGATAACTTC 601 CAGATTTTGG GAAATAATAG Predicted gene structure (within gDNA segment 31345 to 37387): Exon 1 35426 35435 ( 10 n); cDNA 451 460 ( 10 n); score: 0.900 Intron 1 35436 36535 (1100 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 36536 36684 ( 149 n); cDNA 461 608 ( 148 n); score: 0.903 MATCH C08HBa0027D09.1+ SGN-E238551+ 0.903 159 0.256 C PGS_C08HBa0027D09.1+_SGN-E238551+ (35426 35435,36536 36684) Alignment (genomic DNA sequence = upper lines): TAAAAGAAAG AGGGTTTGAA TAAGAAAAAT AGAAAGAACA GAGGAGAAAG AGAGAAACGA 35485 ||||| |||| TAAAACAAAG .......... .......... .......... .......... .......... 460 TCGAGAGAGG GGGAAAACGA AGAAGATAGC CAAGATTTTG AGGAATTGCT TGCTTGATCA 35545 .......... .......... .......... .......... .......... .......... 460 CAATTCTTTG GTGGAGGTAG GTTATGGTTT TTATGCTATT CGTAGTAAAC TCTTAATAGC 35605 .......... .......... .......... .......... .......... .......... 460 GAATGATATG TATTGGGTAG TGTTGTAAAC CCTTCTATAT GCTTAATTGT GTGCTTGCAT 35665 .......... .......... .......... .......... .......... .......... 460 GATGTGTTTA TATAATTGTG ATAAAATAAG CATGATGAAG CTATTGAATC CTAAATCTTG 35725 .......... .......... .......... .......... .......... .......... 460 AAAACCTCTT TGTTAATGAT GATGCCTTAG TATGAAAGAA GGCTTGATGA ACTAAAGTAA 35785 .......... .......... .......... .......... .......... .......... 460 TGAGATTGAT GATGCCTTGG TATAAGAGAA GTCTTGATGA ACTAAAGTAA TGAGATTGAT 35845 .......... .......... .......... .......... .......... .......... 460 GATGCCTTGG TGTAAAAGAA GGCTTGATGA ATTAACAGAA TGAGACTAGT GGAGCGGGTG 35905 .......... .......... .......... .......... .......... .......... 460 TCACGAATCG ACACGTAAAA TTAGGGGATC GGGTGTCACG AAACGACACG TAGAATTAGG 35965 .......... .......... .......... .......... .......... .......... 460 GGATCGGGTG TCACGAACCG ACACGTAGAA TTAGGGGATC AGGTGTCACG AACCAACACG 36025 .......... .......... .......... .......... .......... .......... 460 TAGAATTAGG GGATCGGGTG TCACGGACCG ACACGTAGAA TTAGGGGATC GGGTGTCATG 36085 .......... .......... .......... .......... .......... .......... 460 AACCGACACG TAGAATTAGG GGATCGGAGT GTCACGTTCT GACATATAGT AGTAGGGGAG 36145 .......... .......... .......... .......... .......... .......... 460 CGGAGTGTCA CGTACCGACA CAAGAGGAAT AAAGATAATG AGTCTTGAAA TTATGTTAAC 36205 .......... .......... .......... .......... .......... .......... 460 AAATTCGAAT GAAAAGAACC TATATCCCAA ATGAGTATGG TGTGGAGACT GGAGTTCTCA 36265 .......... .......... .......... .......... .......... .......... 460 TAGGTGTGTT TGATGTGGTT ACACATGATT TGTGAACTTG TTGCTTTCAC ATGTTGAGTA 36325 .......... .......... .......... .......... .......... .......... 460 TTGTAGTTGA TTTTATGATA TTATCTGATA TATACTATTT TCTATTTTGA GTTGGCCGAT 36385 .......... .......... .......... .......... .......... .......... 460 GATATCTACT AAGTACCCGT GTTTTGTACT GACCCCTACT TGTATGTTTT CTTTTTGTTA 36445 .......... .......... .......... .......... .......... .......... 460 ATTGTGGAGT GCAGCAAACG TACCGTCATC TTCAACTCAA CCGAAACTCT AGCCAGTCTT 36505 .......... .......... .......... .......... .......... .......... 460 CATTACACCG GATTTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA 36565 |||||||||| |||||||||| |||||||||| .......... .......... .......... CTTCTAGCTT GGACTGGATC TTCTTCTTCA 490 CGTCTTGATG CCTTGAACTT CCGGCATGGA CTAGCTTTTT TACTTATTTT AGCTTCTTCG 36625 ||||||||| ||||||| || |||||||||| ||||| | || || |||||| |||||||| | TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGC-TGTT TATGTATTTT AGCTTCTTAG 549 ATACTCTTAG A-TTAGTAAT GTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT 36684 |||||||||| | |||||||| || | ||| |||||||||| |||||| ||| |||||||||| ATACTCTTAG ATTTAGTAAT TCGAAG-TAG ATGTTCTTGT GATGATAACT TCCAGATTTT 608 hqPGS_C08HBa0027D09.1+_SGN-E238551+ (36536 36684) ******************************************************************************** EST sequence 94 +strand 286 n (File: SGN-E355114+) 1 TTAGGTTCGT TGGTCTCATC ACACAAGAAC AGGTCTAGTA GAGTCTTTAG GAACGGTAGG 61 GGGACGCCTT TACTTTTCTT TGAGAGGCTA TAAGACTTTA GGAAAATTTC ACCCTTTCAT 121 TCTTTCTTTC GTGCTACTAC TTGAGTCCAA TTGGTATCTA GGCGATACAA ATTGGTATCT 181 GACCATCTTC ACTCTCTTTT GCAGATGGTT AGAACTAGAG CAACGACCAC GTCAACACCA 241 ACACCGGCCA GACAAGAAAC AACTGAGCCA GCCACTGGGG CTGTGG Predicted gene structure (within gDNA segment 35843 to 39390): Exon 1 36875 37161 ( 287 n); cDNA 1 284 ( 284 n); score: 0.885 MATCH C08HBa0027D09.1+ SGN-E355114+ 0.885 287 1.003 C PGS_C08HBa0027D09.1+_SGN-E355114+ (36875 37161) Alignment (genomic DNA sequence = upper lines): TTAGGTTCGT TGGTCTCATC ACACAAGAAT GAGTCTAGTA GAGTCTTAAG GAACGGTAGG 36934 |||||||||| |||||||||| ||||||||| |||||||| ||||||| || |||||||||| TTAGGTTCGT TGGTCTCATC ACACAAGAAC AGGTCTAGTA GAGTCTTTAG GAACGGTAGG 60 GGGACGCCTT TACTTTTCTT TGAGAGCCTA TAAGACTTTA GGAAAACTCC ATTCTTTCTT 36994 |||||||||| |||||||||| |||||| ||| |||||||||| |||||| | | | ||||| | GGGACGCCTT TACTTTTCTT TGAGAGGCTA TAAGACTTTA GGAAAATTTC ACCCTTTCAT 120 TTCTTCTTTC GTGCTATTAC TTGGATCCAA TTGGTATCTA GGTGATAAAA ATTGGTATCT 37054 | ||||||| |||||| ||| ||| ||||| |||||||||| || |||| || |||||||||| TCTTTCTTTC GTGCTACTAC TTGAGTCCAA TTGGTATCTA GGCGATACAA ATTGGTATCT 180 GGCCATCTTC ATTCTATTTC GCAGATGGTT AGAACTAGAG CAACAACGAA TGCGCCAACA 37114 | |||||||| | ||| ||| |||||||||| |||||||||| |||| || | || ||||| GACCATCTTC ACTCTCTTTT GCAGATGGTT AGAACTAGAG CAACGAC-CA --CGTCAACA 237 CCAACATTGG CAAGACAAGA AGCGTCTGAG CCAGCCACTG GGGCTGT 37161 |||||| || | |||||||| | | ||||| |||||||||| ||||||| CCAACACCGG CCAGACAAGA AACAACTGAG CCAGCCACTG GGGCTGT 284 hqPGS_C08HBa0027D09.1+_SGN-E355114+ (36875 37161) ******************************************************************************** EST sequence 264 -strand 694 n (File: SGN-E353359-) 1 GCAAGGTAGG ATGTAGGTCA ATGCATATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC 61 CACTCAACTT TGTTTCAGTC CACAAGAGAG GATTCGTCGT TTTGTGAAAG GGTTGAGGTC 121 AGAGTTGCGG ATTTCAGCGT TACAGGTAGC GGCTACGGCA AAATCCTTGC AAGAAATGGT 181 TGACTTCGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG 241 TAATGCTAAA ACCGTGACGT TAGCCAAGCC TGGGACAGAT CTGTTAGTGT AGGAGGGTGA 301 CTACACTTCC AATCCGGTGC GTATCATCTC CTTTCTTCGT GCTAAGAAAA TGGTTAGTAA 361 AGGGTGTTTA GCTTTCTTGG CACATCTCAA GGATAACACT ACCCAAGTAC CTTCGATTGA 421 CTCAGTTTCA GTAGTTCGTG AGTTTATGGA TGTGTTCCCT GCAGATCATC CTGGTATGCC 481 ACCGGATAGG GATATTGACT TCTGTATTGA TCTCGAACCG GGCACACGCC CCATTTTTAT 541 ACCCCCTTAT AGAATGGCTC CCGCAGAGTT AAGAGAGTTA AAGGCACAAC TTCAAGAGTT 601 ATTGAACAAA GGCTTCATTA GACCAAGTGC ATCTCCTTGG GGTGCTCCGG TTTTGTTGTA 661 AAGATCGGCA GTTTTTGAAT GTGCATAGAC TACA Predicted gene structure (within gDNA segment 37065 to 43601): Exon 1 37864 38050 ( 187 n); cDNA 1 187 ( 187 n); score: 0.898 Intron 1 38051 38777 ( 727 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.92) Exon 2 38778 39291 ( 514 n); cDNA 188 694 ( 507 n); score: 0.868 MATCH C08HBa0027D09.1+ SGN-E353359- 0.876 701 1.010 C PGS_C08HBa0027D09.1+_SGN-E353359- (37864 38050,38778 39291) Alignment (genomic DNA sequence = upper lines): GCCAGGTAGG ATGTCGGTTA CTGCATATGA GGCTAAGTTT CGTGCATTAT CTAGGTATGC 37923 || ||||||| |||| ||| | ||||||||| |||||||||| |||||| ||| | || ||||| GCAAGGTAGG ATGTAGGTCA ATGCATATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC 60 CACCCAACTT TGTTTCAGTC CACAAGAGCG GATTCACCAT TTTGTGAAGG GGTTGAGGTC 37983 ||| |||||| |||||||||| |||||||| | ||||| | | |||||||| | |||||||||| CACTCAACTT TGTTTCAGTC CACAAGAGAG GATTCGTCGT TTTGTGAAAG GGTTGAGGTC 120 AGAACTGCGG ATTTCAGCCT TACAGGTAGC GGCTACGGCA AAATCCTTTC AAGAAGTGGT 38043 ||| ||||| |||||||| | |||||||||| |||||||||| |||||||| | ||||| |||| AGAGTTGCGG ATTTCAGCGT TACAGGTAGC GGCTACGGCA AAATCCTTGC AAGAAATGGT 180 AGACTTCGTG ATAAAGGTGG AAGGAGTGAA GCCAGATGAC TTCACCATGG CATCGACATC 38103 |||||| TGACTTC... .......... .......... .......... .......... .......... 187 AAAAAGGTTT CAAAAGGGAG GTGAGTTTAA TTGTTCTTAC TCTAGAGGAC AGGGTTCAGA 38163 .......... .......... .......... .......... .......... .......... 187 AGGTTACTCA GTCCGACCAA TTCAGTCTTC ACTACAGACT GTAGTTGGGG GTCCACCTCA 38223 .......... .......... .......... .......... .......... .......... 187 GACCGGTCAA CACTTCTATG AGAGACCTAT GCTTGACTCC AGGGAGTGTT ATGGATGTGG 38283 .......... .......... .......... .......... .......... .......... 187 GGAGACTGGA CATATTAGGA GGAATTGTCC AAAACAGAGT TATATACCCC CAATAGCTAG 38343 .......... .......... .......... .......... .......... .......... 187 AGGTAGAGGT GGTCATGGTA GAGGCCGTTA TTTTGGAGAA CGCGGTGGCC GAGGTAATGG 38403 .......... .......... .......... .......... .......... .......... 187 TGGTCACTAA AACGGCTGGG GTAACGGGCA AACTGGAGCC ACTACAGCAC AACATGGTAG 38463 .......... .......... .......... .......... .......... .......... 187 GGGCAACGGG CAGACAGGTG ATAGGGCCCA TTGTTATGCT TTCCCTGGGA GATCTGAAGC 38523 .......... .......... .......... .......... .......... .......... 187 GGAGACATCT GATGCTGTCA TCACAGGTAA TCTTTTGGTT TGTGATTGCA TGGCTTCTGT 38583 .......... .......... .......... .......... .......... .......... 187 ATTTTTTGAT CATGGATCCA CATTTTCTTA TGTATCTTCC TCATTTGCTA ATGGTCTTAA 38643 .......... .......... .......... .......... .......... .......... 187 TTTACATTGT GAACTGCTTG ACATGCCTAT TCGTGTTTCT ACTCCGGTGG GTGAGTCTGT 38703 .......... .......... .......... .......... .......... .......... 187 GATAGTTGAA AAAGTATATA GGTCTGGGGA GCAATACTCA TGTAGACTTG GTTATCTCAG 38763 .......... .......... .......... .......... .......... .......... 187 AAATGGTTGA TTTTGATGTA ATTCTGGGTT TGACTTGGCT TTCTCTGAAT TTTGCGATCT 38823 |||||| ||||||||| |||||||||| ||||| ||| ||||| |||| .......... ....GATGTA ATTCTGGGTA TGACTTGGCT TTCTCCAAAT TTTGCAATCT 233 TGGATTGTAA TGCTAAAACT GTGACGTTAG CCAAGCCTGG GACAGATCCG TTAGCGTGGG 38883 |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | |||| || || TGGATTGTAA TGCTAAAACC GTGACGTTAG CCAAGCCTGG GACAGATCTG TTAGTGTAGG 293 AGGGCGACTA CACTTCCACT CCGGTTCGTA TCATCTCCGT TCTTCGTGCT AAGAGAATGG 38943 |||| ||||| |||||||| | ||||| |||| |||||||| | |||||||||| |||| ||||| AGGGTGACTA CACTTCCAAT CCGGTGCGTA TCATCTCCTT TCTTCGTGCT AAGAAAATGG 353 TAAGTAAGGG GTGTTTAGAT TTCTTGTCAC ATCTCAGGGA TGATACTACC CAAGTACCTT 39003 | ||||| || |||||||| | |||||| ||| |||||| ||| | | |||||| |||||||||| TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC ATCTCAAGGA TAACACTACC CAAGTACCTT 413 CAATTGAGTC AGTTTCGATA GTCTGTGAGT TTCTAGATGT GTTTCCCACA GATCTTCCTG 39063 | ||||| || |||||| || || |||||| || | ||||| ||| || || |||| ||||| CGATTGACTC AGTTTCAGTA GTTCGTGAGT TTATGGATGT GTTCCCTGCA GATCATCCTG 473 GTATGCCACC GGATAGAGAT ATTGACTTCT GCATCGATCT TGAACCGGGT ACTCGCCCCG 39123 |||||||||| |||||| ||| |||||||||| | || ||||| |||||||| || |||||| GTATGCCACC GGATAGGGAT ATTGACTTCT GTATTGATCT CGAACCGGGC ACACGCCCCA 533 TTTCTATACC CCCTTATAGA ATGGCTCCCG CGGAGTTGAG CGAGTTAAAG GCTCAACTTC 39183 ||| |||||| |||||||||| |||||||||| | ||||| || ||||||||| || ||||||| TTTTTATACC CCCTTATAGA ATGGCTCCCG CAGAGTTAAG AGAGTTAAAG GCACAACTTC 593 AAGAATTGTT AGGAAATGGC TTCATTAGAC AAAGTGCATA TCCTTGGGGT GCTCTTGTTT 39243 |||| || || || ||| |||||||||| |||||||| |||||||||| |||| |||| AAGAGTTATT GAACAAAGGC TTCATTAGAC CAAGTGCATC TCCTTGGGGT GCTCCGGTTT 653 TGTTTGTGAA GAAGAACGAT GGAAGCTTTC GGATGTCCAT AGACTACA 39291 || |||| | |||| | || || ||| | |||| ||| |||||||| TG-TTGT--A -AAGATC--- GGCAGTTTTT GAATGTGCAT AGACTACA 694 hqPGS_C08HBa0027D09.1+_SGN-E353359- (37864 38050,38778 39291) ******************************************************************************** EST sequence 252 -strand 433 n (File: SGN-E352180-) 1 GGAGAACAGC GGCAAGGGGC CGTGGTAGAG GTCGTGGGAG GACGTCATCT AGAGGAAGAG 61 AACGAGAACC GAGCCCATCT GGTACTAGGG CGGTGACTCC TCCACCGACT GAGGAAGTAA 121 TAAGAGAAGG GGAGGATGGG GAAACTGAAC AAGTGCAAAA TGAGGAAATG CCACCCCAAC 181 CTACCCCAGA GATGATCAAT CAGGTTCTGG CTTATCTTAG CGGTTTATCT GATCAAGGTC 241 AAGCACCTCC AGTGTTTTCT GCGCCAACAC CTCCGGTTTC AGAAGTACAA CATGCGGCTA 301 CTATGGCTCC CCGCATGGAT GTTCCATTGC ACATAGGTAC ATTTCCACGT TTGACTACTG 361 GGCCTATAAT GACAAATGAT CAGCATGAAC TTTTCAGTAA GTTCTTGAAA TTGAAACCTC 421 CGGTCTTCAA GGG Predicted gene structure (within gDNA segment 35921 to 40227): Exon 1 37173 37602 ( 430 n); cDNA 4 433 ( 430 n); score: 0.870 MATCH C08HBa0027D09.1+ SGN-E352180- 0.870 430 0.993 C PGS_C08HBa0027D09.1+_SGN-E352180- (37173 37602) Alignment (genomic DNA sequence = upper lines): GAGTAGTGGC AAGAGGCCGT GGAAGGGGTC GCGGGAGGAC GTCCTCTAGA GGAATAGGAC 37232 || || ||| ||| |||||| || || |||| | |||||||| ||| |||||| |||| || || GAACAGCGGC AAGGGGCCGT GGTAGAGGTC GTGGGAGGAC GTCATCTAGA GGAAGAGAAC 63 AAGCACCTAG CCCATCTGGT ACTAGGGCGG TGACTCCTCC ACCGGCTGAA GAAGTAGTAA 37292 || ||| || |||||||||| |||||||||| |||||||||| |||| |||| |||||| ||| GAGAACCGAG CCCATCTGGT ACTAGGGCGG TGACTCCTCC ACCGACTGAG GAAGTAATAA 123 GAGAGGGGGA GGATGGGGAA AATGAGCAAG TACAGAATGA GGAATTACCA CCCCAACCTA 37352 |||| ||||| |||||||||| | ||| |||| | || ||||| |||| | ||| |||||||||| GAGAAGGGGA GGATGGGGAA ACTGAACAAG TGCAAAATGA GGAAATGCCA CCCCAACCTA 183 CCCCAGAGAT GATCAATCAG GTTCTTGCTT ATCTTAGTGG GTTATCTGAT CAAGGCCAGA 37412 |||||||||| |||||||||| ||||| |||| ||||||| || ||||||||| ||||| || CCCCAGAGAT GATCAATCAG GTTCTGGCTT ATCTTAGCGG TTTATCTGAT CAAGGTCAAG 243 CACCTCCAGT GTTTTCTGCA CCAGCACCTC AGGTTCCGGA GGTATAACAT GCAGCTACTG 37472 |||||||||| ||||||||| ||| |||||| |||| | || ||| ||||| || |||||| CACCTCCAGT GTTTTCTGCG CCAACACCTC CGGTTTCAGA AGTACAACAT GCGGCTACTA 303 TAGCTCCTCG CATGGATGCC TCATTGGAAA TAGGCACGTT TCCTCGTCTG ACTACAGGAC 37532 | ||||| || |||||||| ||||| | | |||| || || ||| ||| || ||||| || | TGGCTCCCCG CATGGATGTT CCATTGCACA TAGGTACATT TCCACGTTTG ACTACTGGGC 363 CTATAATGAT AAATGATCAG CATGTACTTT TCAGTAAGTT CTTGAAATTA AAACCTCCAA 37592 ||||||||| |||||||||| |||| ||||| |||||||||| ||||||||| |||||||| CTATAATGAC AAATGATCAG CATGAACTTT TCAGTAAGTT CTTGAAATTG AAACCTCCGG 423 TCTTCAAGGG 37602 |||||||||| TCTTCAAGGG 433 hqPGS_C08HBa0027D09.1+_SGN-E352180- (37173 37602) ******************************************************************************** EST sequence 131 +strand 554 n (File: SGN-E329287+) 1 ACCTAGCCCA TCTGGTACTA AGGCGGTGAC ACCTCCACCA ACTGAGGAAG TGGTAAGAGA 61 GGGTGAGGAT GGGGAGAATG AACAAGTGCA GAATGAGGAA TTGCCACCCC AACCTACCCA 121 AGAGATGATC AATCAGGTTC TTGCTTACCT TAGCGGGTTA TCTGATCAAG GCCAAGCACC 181 TCCAGTGTTT TCTGCACTAG CACCTCAGGC TCCGGAGGTA CAACATGCGC CTACTGTGAC 241 TCCCCGCATC GATACCTCAT TGGAAATAGG AACGTTTCCC CGTCTGACTA CAGGGCCTAT 301 AATGACAAAT GATCAGCATG AACTTTTTAG TAAGTTCTTG AAATTGAAAC CTCAAGTCTA 361 CAAGGGTGTT GAATCTGAGG ATGCCTACGA TTTTCTGGTT GACTGTCATG AGCTACTACA 421 CAAGATGGGT ATAGTAGAAC GGTTTGGTGT TGAGTTTGTG ACTTATCAGT TTCAAGGGAA 481 CGCCAAAATG TGGTGGCGGT CACATGTTGA GTGTCAACCA ACAGAGGCAC CACGTATGAC 541 TTGGGCATCA TTCT Predicted gene structure (within gDNA segment 35710 to 38400): Exon 1 37237 37790 ( 554 n); cDNA 1 554 ( 554 n); score: 0.924 MATCH C08HBa0027D09.1+ SGN-E329287+ 0.924 554 1.000 C PGS_C08HBa0027D09.1+_SGN-E329287+ (37237 37790) Alignment (genomic DNA sequence = upper lines): ACCTAGCCCA TCTGGTACTA GGGCGGTGAC TCCTCCACCG GCTGAAGAAG TAGTAAGAGA 37296 |||||||||| |||||||||| ||||||||| |||||||| |||| |||| | |||||||| ACCTAGCCCA TCTGGTACTA AGGCGGTGAC ACCTCCACCA ACTGAGGAAG TGGTAAGAGA 60 GGGGGAGGAT GGGGAAAATG AGCAAGTACA GAATGAGGAA TTACCACCCC AACCTACCCC 37356 ||| |||||| ||||| |||| | ||||| || |||||||||| || ||||||| ||||||||| GGGTGAGGAT GGGGAGAATG AACAAGTGCA GAATGAGGAA TTGCCACCCC AACCTACCCA 120 AGAGATGATC AATCAGGTTC TTGCTTATCT TAGTGGGTTA TCTGATCAAG GCCAGACACC 37416 |||||||||| |||||||||| ||||||| || ||| |||||| |||||||||| |||| |||| AGAGATGATC AATCAGGTTC TTGCTTACCT TAGCGGGTTA TCTGATCAAG GCCAAGCACC 180 TCCAGTGTTT TCTGCACCAG CACCTCAGGT TCCGGAGGTA TAACATGCAG CTACTGTAGC 37476 |||||||||| ||||||| || ||||||||| |||||||||| ||||||| ||||||| | TCCAGTGTTT TCTGCACTAG CACCTCAGGC TCCGGAGGTA CAACATGCGC CTACTGTGAC 240 TCCTCGCATG GATGCCTCAT TGGAAATAGG CACGTTTCCT CGTCTGACTA CAGGACCTAT 37536 ||| ||||| ||| |||||| |||||||||| |||||||| |||||||||| |||| ||||| TCCCCGCATC GATACCTCAT TGGAAATAGG AACGTTTCCC CGTCTGACTA CAGGGCCTAT 300 AATGATAAAT GATCAGCATG TACTTTTCAG TAAGTTCTTG AAATTAAAAC CTCCAATCTT 37596 ||||| |||| |||||||||| |||||| || |||||||||| ||||| |||| ||| | ||| AATGACAAAT GATCAGCATG AACTTTTTAG TAAGTTCTTG AAATTGAAAC CTCAAGTCTA 360 CAAGGGTGCT GAATCTGAGG ATGCCTACGA TTTTCTGGTT GACTGTCATG AGCTACTACA 37656 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGGTGTT GAATCTGAGG ATGCCTACGA TTTTCTGGTT GACTGTCATG AGCTACTACA 420 CAAGATGGGA ATAGTAAAAC GGTTTGGTGT TGAGTTTGTG ACTTATCAGT TTCAAGGAAA 37716 ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ||||||| || CAAGATGGGT ATAGTAGAAC GGTTTGGTGT TGAGTTTGTG ACTTATCAGT TTCAAGGGAA 480 CGCCAAAATG TGGTGGCGGT CACATGTTGA CTGTCAACCA ACAGAGGCAC CACCTATGAC 37776 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||| |||||| CGCCAAAATG TGGTGGCGGT CACATGTTGA GTGTCAACCA ACAGAGGCAC CACGTATGAC 540 TTGGGCATCA TTCT 37790 |||||||||| |||| TTGGGCATCA TTCT 554 hqPGS_C08HBa0027D09.1+_SGN-E329287+ (37237 37790) ******************************************************************************** EST sequence 295 -strand 720 n (File: SGN-E356614-) 1 AGCCCATCTG ATACTAGGGC AGTGACTCTT CCACTGACTG AGGAAGTAAT AGAGAAAGGG 61 AGGGATGGGG AAACTGANCA AGTGCAAAAT GAGGAAATGC CACCCCAACC TACCCCAGAG 121 ATGATCAATC AGGTTCTGGC TTATCTTAGC GGGTTATCTG ATCAAGGTCA AGCACCTCCA 181 GTGTTTTCTG CGCCAACACC TCCGGTTTCA GAAGTACAAC ATGCGGCTAC TATGGCTCCC 241 CGCATGGATG TTCCATTGGA CATAGGCACA TTTCCACGTT TGACTACTGT CCCTATAATG 301 ACAAATGATC AGCATGAACT TTTCAGTAAG TTCTTGAAAT TGAAACCTCC GGTCTTCAAG 361 GGTGCTGAAT CGGAGGATGC TTATGATTTT CTGGTTGACT GTCACGAGCT ACTACACAAG 421 ATGGGTATAG TAGAACGGTT TGGTGTGGAG TTTGTGACTT ATCAGTTTCA AGGGAACGCC 481 CAAATGTGGT GGCGGTCACA TATCGAGTGT CAACCAATAG AGGCATCACC TATGACTTGG 541 GCCTCATTCT ATAGTTTGTT TATGGAGAAG TATATCCCCC GGACTTTGAG GGATAAGAAA 601 AGGGATGAGT TCTTGAGCCT AGAGCAAGGT AGGGTGTCAG TTAATGCTTA TGAGGCTAAG 661 TTTCGTGCAC TATCCAGATA TGCCACTCAA CTCTGTTTCA GTCCTCAAGA GCGGATTCGC Predicted gene structure (within gDNA segment 35740 to 39415): Exon 1 37241 37958 ( 718 n); cDNA 1 718 ( 718 n); score: 0.889 MATCH C08HBa0027D09.1+ SGN-E356614- 0.889 718 0.997 C PGS_C08HBa0027D09.1+_SGN-E356614- (37241 37958) Alignment (genomic DNA sequence = upper lines): AGCCCATCTG GTACTAGGGC GGTGACTCCT CCACCGGCTG AAGAAGTAGT A-AGAGAGGG 37299 |||||||||| ||||||||| ||||||| | |||| | ||| | |||||| | | ||| |||| AGCCCATCTG ATACTAGGGC AGTGACTCTT CCACTGACTG AGGAAGTAAT AGAGAAAGGG 60 GGAGGATGGG GAAAATGAGC AAGTACAGAA TGAGGAATTA CCACCCCAAC CTACCCCAGA 37359 | ||||||| |||| ||| | |||| || || ||||||| | |||||||||| |||||||||| AG-GGATGGG GAAACTGANC AAGTGCAAAA TGAGGAAATG CCACCCCAAC CTACCCCAGA 119 GATGATCAAT CAGGTTCTTG CTTATCTTAG TGGGTTATCT GATCAAGGCC AGACACCTCC 37419 |||||||||| |||||||| | |||||||||| ||||||||| |||||||| | | ||||||| GATGATCAAT CAGGTTCTGG CTTATCTTAG CGGGTTATCT GATCAAGGTC AAGCACCTCC 179 AGTGTTTTCT GCACCAGCAC CTCAGGTTCC GGAGGTATAA CATGCAGCTA CTGTAGCTCC 37479 |||||||||| || ||| ||| ||| |||| | || ||| || ||||| |||| || | ||||| AGTGTTTTCT GCGCCAACAC CTCCGGTTTC AGAAGTACAA CATGCGGCTA CTATGGCTCC 239 TCGCATGGAT GCCTCATTGG AAATAGGCAC GTTTCCTCGT CTGACTACAG GACCTATAAT 37539 ||||||||| | |||||| | |||||||| ||||| ||| ||||||| | |||||||| CCGCATGGAT GTTCCATTGG ACATAGGCAC ATTTCCACGT TTGACTACTG TCCCTATAAT 299 GATAAATGAT CAGCATGTAC TTTTCAGTAA GTTCTTGAAA TTAAAACCTC CAATCTTCAA 37599 || ||||||| ||||||| || |||||||||| |||||||||| || ||||||| | ||||||| GACAAATGAT CAGCATGAAC TTTTCAGTAA GTTCTTGAAA TTGAAACCTC CGGTCTTCAA 359 GGGTGCTGAA TCTGAGGATG CCTACGATTT TCTGGTTGAC TGTCATGAGC TACTACACAA 37659 |||||||||| || ||||||| | || ||||| |||||||||| ||||| |||| |||||||||| GGGTGCTGAA TCGGAGGATG CTTATGATTT TCTGGTTGAC TGTCACGAGC TACTACACAA 419 GATGGGAATA GTAAAACGGT TTGGTGTTGA GTTTGTGACT TATCAGTTTC AAGGAAACGC 37719 |||||| ||| ||| |||||| ||||||| || |||||||||| |||||||||| |||| ||||| GATGGGTATA GTAGAACGGT TTGGTGTGGA GTTTGTGACT TATCAGTTTC AAGGGAACGC 479 CAAAATGTGG TGGCGGTCAC ATGTTGACTG TCAACCAACA GAGGCACCAC CTATGACTTG 37779 | |||||||| |||||||||| || | || || |||||||| | |||||| ||| |||||||||| CCAAATGTGG TGGCGGTCAC ATATCGAGTG TCAACCAATA GAGGCATCAC CTATGACTTG 539 GGCATCATTC TCTAGCTTGT TTATGGAGAA GTATATCCCC CGGACTTTGA GGGATAGGAA 37839 ||| |||||| | ||| |||| |||||||||| |||||||||| |||||||||| |||||| ||| GGCCTCATTC TATAGTTTGT TTATGGAGAA GTATATCCCC CGGACTTTGA GGGATAAGAA 599 AAGAGATGAG TTCTTGAGCC TAGAGCCAGG TAGGATGTCG GTTACTGCAT ATGAGGCTAA 37899 ||| |||||| |||||||||| |||||| ||| |||| |||| |||| ||| | |||||||||| AAGGGATGAG TTCTTGAGCC TAGAGCAAGG TAGGGTGTCA GTTAATGCTT ATGAGGCTAA 659 GTTTCGTGCA TTATCTAGGT ATGCCACCCA ACTTTGTTTC AGTCCACAAG AGCGGATTC 37958 |||||||||| |||| || | ||||||| || ||| |||||| ||||| |||| ||||||||| GTTTCGTGCA CTATCCAGAT ATGCCACTCA ACTCTGTTTC AGTCCTCAAG AGCGGATTC 718 hqPGS_C08HBa0027D09.1+_SGN-E356614- (37241 37958) ******************************************************************************** EST sequence 197 -strand 664 n (File: SGN-E352401-) 1 AGAAGGGGAG GATGGGGAAA CTGAACAAGT GCAAATGAGG GAAATGGCAC CCCAACCTAC 61 CCCAGAGATG ATCAATCAGG TTCTGGCTTA TCTTAGCGGG TTATCTGATC AAGGTCAAGC 121 ACCTCCAGTG TTTTCTGCGC CAACACCTCC GGTTTCAGAA GTACAACATG CGGCTACTAT 181 GGCTCCCCGC ATGGATGTTC CATTGGACAT AGGCACATTT CCACGTTTGA CTACTGTCCC 241 TATAATGACA AATGATCAGC ATGAACTTTT CAGTAAGTTC TTGAAATTGA AACCTCCGGT 301 CTTCAAGGGT GCTGAATCGG AGGATGCTTA TGATTTTCTG GTTGACTGTC ACGAGCTACT 361 ACACAAGATG GGTATAGTAG AACGGTTTGG TGTGGAGTTT GTGACTTATC AGTTTCAAGG 421 GAACGCCCAA ATGTGGTGGC GGTCACATAT CGAGTGTCAA CCAATAGAGG CATCACCTAT 481 GACTTGGGCC TCATTCTATA GTTTGTTTAT GGAGAAGTAT ATCCCCCGGA CTTTGAGGGA 541 TAAGAAAAGG GATGAGTTCT TGAGCCTAGA GCAAGGTAGG GTGTCAGTTA ATGCTTATGA 601 GGCTAAGTTT CGTGCACTAT CCAGATATGC CACTCAACTC TGTTTCAGTC CTCAAGAGCG 661 GATT Predicted gene structure (within gDNA segment 36261 to 39385): Exon 1 37294 37957 ( 664 n); cDNA 1 664 ( 664 n); score: 0.892 MATCH C08HBa0027D09.1+ SGN-E352401- 0.892 664 1.000 C PGS_C08HBa0027D09.1+_SGN-E352401- (37294 37957) Alignment (genomic DNA sequence = upper lines): AGAGGGGGAG GATGGGGAAA ATGAGCAAGT ACAGAATGA- GGAATTACCA CCCCAACCTA 37352 ||| |||||| |||||||||| ||| ||||| || ||||| |||| | || |||||||||| AGAAGGGGAG GATGGGGAAA CTGAACAAGT GCA-AATGAG GGAAATGGCA CCCCAACCTA 59 CCCCAGAGAT GATCAATCAG GTTCTTGCTT ATCTTAGTGG GTTATCTGAT CAAGGCCAGA 37412 |||||||||| |||||||||| ||||| |||| ||||||| || |||||||||| ||||| || CCCCAGAGAT GATCAATCAG GTTCTGGCTT ATCTTAGCGG GTTATCTGAT CAAGGTCAAG 119 CACCTCCAGT GTTTTCTGCA CCAGCACCTC AGGTTCCGGA GGTATAACAT GCAGCTACTG 37472 |||||||||| ||||||||| ||| |||||| |||| | || ||| ||||| || |||||| CACCTCCAGT GTTTTCTGCG CCAACACCTC CGGTTTCAGA AGTACAACAT GCGGCTACTA 179 TAGCTCCTCG CATGGATGCC TCATTGGAAA TAGGCACGTT TCCTCGTCTG ACTACAGGAC 37532 | ||||| || |||||||| ||||||| | ||||||| || ||| ||| || ||||| | | TGGCTCCCCG CATGGATGTT CCATTGGACA TAGGCACATT TCCACGTTTG ACTACTGTCC 239 CTATAATGAT AAATGATCAG CATGTACTTT TCAGTAAGTT CTTGAAATTA AAACCTCCAA 37592 ||||||||| |||||||||| |||| ||||| |||||||||| ||||||||| |||||||| CTATAATGAC AAATGATCAG CATGAACTTT TCAGTAAGTT CTTGAAATTG AAACCTCCGG 299 TCTTCAAGGG TGCTGAATCT GAGGATGCCT ACGATTTTCT GGTTGACTGT CATGAGCTAC 37652 |||||||||| ||||||||| |||||||| | | |||||||| |||||||||| || ||||||| TCTTCAAGGG TGCTGAATCG GAGGATGCTT ATGATTTTCT GGTTGACTGT CACGAGCTAC 359 TACACAAGAT GGGAATAGTA AAACGGTTTG GTGTTGAGTT TGTGACTTAT CAGTTTCAAG 37712 |||||||||| ||| |||||| ||||||||| |||| ||||| |||||||||| |||||||||| TACACAAGAT GGGTATAGTA GAACGGTTTG GTGTGGAGTT TGTGACTTAT CAGTTTCAAG 419 GAAACGCCAA AATGTGGTGG CGGTCACATG TTGACTGTCA ACCAACAGAG GCACCACCTA 37772 | |||||| | |||||||||| ||||||||| | || ||||| ||||| |||| ||| |||||| GGAACGCCCA AATGTGGTGG CGGTCACATA TCGAGTGTCA ACCAATAGAG GCATCACCTA 479 TGACTTGGGC ATCATTCTCT AGCTTGTTTA TGGAGAAGTA TATCCCCCGG ACTTTGAGGG 37832 |||||||||| ||||||| | || ||||||| |||||||||| |||||||||| |||||||||| TGACTTGGGC CTCATTCTAT AGTTTGTTTA TGGAGAAGTA TATCCCCCGG ACTTTGAGGG 539 ATAGGAAAAG AGATGAGTTC TTGAGCCTAG AGCCAGGTAG GATGTCGGTT ACTGCATATG 37892 ||| |||||| ||||||||| |||||||||| ||| |||||| | |||| ||| | ||| |||| ATAAGAAAAG GGATGAGTTC TTGAGCCTAG AGCAAGGTAG GGTGTCAGTT AATGCTTATG 599 AGGCTAAGTT TCGTGCATTA TCTAGGTATG CCACCCAACT TTGTTTCAGT CCACAAGAGC 37952 |||||||||| ||||||| || || || |||| |||| ||||| ||||||||| || ||||||| AGGCTAAGTT TCGTGCACTA TCCAGATATG CCACTCAACT CTGTTTCAGT CCTCAAGAGC 659 GGATT 37957 ||||| GGATT 664 hqPGS_C08HBa0027D09.1+_SGN-E352401- (37294 37957) ******************************************************************************** EST sequence 282 -strand 713 n (File: SGN-E349404-) 1 CAGAGATACG ACATGCGGCT ACTATGGCTC CCCGCATAGA TGCACCATTG GGAATAGGCA 61 CATTTCCACG TCTGACTACT GGGCCTATTA TGACAAACGA TCAACATGAA CTTTTCAGTA 121 AGTTCTTGAA ACTGAAACCT CCAGTCTTCA AGGGTGCAGA ATCTGAAGAT GCTTATGATT 181 TTCTGGTTGA TTGTCATGAG CTACTACACA AAATGGGGAT AGTAGAGAGG TTTGGCGTCG 241 AGTTCGTGAG CTATCAGTTC CAAGGGAACG CCAAGATGTG GTGGCGTTCA CATGTTGAGT 301 GTCAACCAAC AGAGGCACCA CCTATGACTT GGGAATCATT CTCTAGTTTG TTCATGGAGA 361 AATATATCCC AAGGACTTTG AGAGATAGGA AAAGGGATGA GTTCTTGAGT CTTGAACAGG 421 GAAGGATGAC AGTAAACGCG TATGAGGCTA AATTTCGCGC ACTATCCAGA TACGCCACCC 481 AACTCTGTTT TAGTCCACAA GAACGGATCC GCCGTTTTGT GAAGGGGTTG AGATCAGAAT 541 TGCGGATTTC AGCCTTACAG ATAGCGGCAA CAGCAACATC CTTTCAAGAG GTGGTAGACT 601 TTGTGATTGA GGTGGAAGGA GTGAAACCGG ATGACTTCAC CACGACATCG ACATCGAAGA 661 GGTTTAGAAG GGGAGGAGAG TATAATGGTT CTTATTCTAG AGGACAGAAC CCC Predicted gene structure (within gDNA segment 34148 to 40138): Exon 1 37451 38155 ( 705 n); cDNA 3 707 ( 705 n); score: 0.861 MATCH C08HBa0027D09.1+ SGN-E349404- 0.861 705 0.989 C PGS_C08HBa0027D09.1+_SGN-E349404- (37451 38155) Alignment (genomic DNA sequence = upper lines): GAGGTATAAC ATGCAGCTAC TGTAGCTCCT CGCATGGATG CCTCATTGGA AATAGGCACG 37510 ||| || || |||| ||||| | | ||||| ||||| |||| | |||||| ||||||||| GAGATACGAC ATGCGGCTAC TATGGCTCCC CGCATAGATG CACCATTGGG AATAGGCACA 62 TTTCCTCGTC TGACTACAGG ACCTATAATG ATAAATGATC AGCATGTACT TTTCAGTAAG 37570 ||||| |||| ||||||| || ||||| ||| | ||| |||| | |||| ||| |||||||||| TTTCCACGTC TGACTACTGG GCCTATTATG ACAAACGATC AACATGAACT TTTCAGTAAG 122 TTCTTGAAAT TAAAACCTCC AATCTTCAAG GGTGCTGAAT CTGAGGATGC CTACGATTTT 37630 ||||||||| | |||||||| | |||||||| ||||| |||| |||| ||||| || |||||| TTCTTGAAAC TGAAACCTCC AGTCTTCAAG GGTGCAGAAT CTGAAGATGC TTATGATTTT 182 CTGGTTGACT GTCATGAGCT ACTACACAAG ATGGGAATAG TAAAACGGTT TGGTGTTGAG 37690 |||||||| | |||||||||| ||||||||| ||||| |||| || | |||| ||| || ||| CTGGTTGATT GTCATGAGCT ACTACACAAA ATGGGGATAG TAGAGAGGTT TGGCGTCGAG 242 TTTGTGACTT ATCAGTTTCA AGGAAACGCC AAAATGTGGT GGCGGTCACA TGTTGACTGT 37750 || |||| | ||||||| || ||| |||||| || ||||||| |||| ||||| |||||| ||| TTCGTGAGCT ATCAGTTCCA AGGGAACGCC AAGATGTGGT GGCGTTCACA TGTTGAGTGT 302 CAACCAACAG AGGCACCACC TATGACTTGG GCATCATTCT CTAGCTTGTT TATGGAGAAG 37810 |||||||||| |||||||||| |||||||||| | |||||||| |||| ||||| |||||||| CAACCAACAG AGGCACCACC TATGACTTGG GAATCATTCT CTAGTTTGTT CATGGAGAAA 362 TATATCCCCC GGACTTTGAG GGATAGGAAA AGAGATGAGT TCTTGAGCCT AGAGCCAGGT 37870 |||||||| |||||||||| ||||||||| || ||||||| ||||||| || || | || TATATCCCAA GGACTTTGAG AGATAGGAAA AGGGATGAGT TCTTGAGTCT TGAACAGGGA 422 AGGATGTCGG TTACTGCATA TGAGGCTAAG TTTCGTGCAT TATCTAGGTA TGCCACCCAA 37930 |||||| | | | | || || ||||||||| ||||| ||| |||| || || ||||||||| AGGATGACAG TAAACGCGTA TGAGGCTAAA TTTCGCGCAC TATCCAGATA CGCCACCCAA 482 CTTTGTTTCA GTCCACAAGA GCGGATTCAC CATTTTGTGA AGGGGTTGAG GTCAGAACTG 37990 || ||||| | |||||||||| ||||| | | | |||||||| |||||||||| |||||| || CTCTGTTTTA GTCCACAAGA ACGGATCCGC CGTTTTGTGA AGGGGTTGAG ATCAGAATTG 542 CGGATTTCAG CCTTACAGGT AGCGGCTACG GCAAAATCCT TTCAAGAAGT GGTAGACTTC 38050 |||||||||| |||||||| | |||||| || |||| ||||| ||||||| || ||||||||| CGGATTTCAG CCTTACAGAT AGCGGCAACA GCAACATCCT TTCAAGAGGT GGTAGACTTT 602 GTGATAAAGG TGGAAGGAGT GAAGCCAGAT GACTTCACCA TGGCATCGAC ATCAAAAAGG 38110 ||||| ||| |||||||||| ||| || ||| |||||||||| | ||||||| ||| || ||| GTGATTGAGG TGGAAGGAGT GAAACCGGAT GACTTCACCA CGACATCGAC ATCGAAGAGG 662 TTTCAAAAGG GAGGTGAGTT TAATTGTTCT TACTCTAGAG GACAG 38155 ||| || || |||| |||| |||| ||||| || ||||||| ||||| TTTAGAAGGG GAGGAGAGTA TAATGGTTCT TATTCTAGAG GACAG 707 hqPGS_C08HBa0027D09.1+_SGN-E349404- (37451 38155) ******************************************************************************** EST sequence 247 -strand 679 n (File: SGN-E351625-) 1 CATAGATGCA CCATTGGGAA TAGGCACATT TCCACGTCTG ACTACTGGGC TTATTATGAC 61 AAACGATCAA CATGAACTTT TCAGTAAGTT CTTGAAACTG AAACCTCCAG TCTTCAAGGG 121 TGCAGAATCT GAAGATGCTT ATGATTTTCT GGTTGATTGT CATGAGCTAC TACACAAAAT 181 GGGGATAGTA GAGAGGTTTG GCGTCGAGTT CGTGAGCTAT CAGTTCCAAG GGAACGCCAA 241 GATGTGGTGG CGTTCACATG TTGAGTGTCA ACCAACAGAG GCACCACCTA TGACTTGGGA 301 ATCATTCTCT AGTTTGTTCA TGGAGAAATA TATCCCAAGG ACTTTGAGAG ATAGGAAAAG 361 GGATGAGTTC TTGAGTCTTG AACAGGGAAG GATGACAGTA AACGCGTATG AGGCTAAATT 421 TCGCGCACTA TCCAGATACG CCACCCAACT CTGTTTTAGT CCACAAGAAC GGATCCGCCG 481 TTTTGTGAAG GGGTTGAGAT CAGAATTGCG GATTTCAGCC TTACAGATAG CGGCAACAGC 541 AACATCCTTT CAAGAGGTGG TAGACTTTGT GATTGAGGTG GAAGGAGTGA AACCGGATGA 601 CTTCACCACG ACATCGACAT CGAAGAGGTT TAGAAGGGGA GGAGAGTATA ATGGTTCTTA 661 TTCTAGAGGA CAGAACCCC Predicted gene structure (within gDNA segment 34488 to 40138): Exon 1 37483 38155 ( 673 n); cDNA 1 673 ( 673 n); score: 0.863 MATCH C08HBa0027D09.1+ SGN-E351625- 0.863 673 0.991 C PGS_C08HBa0027D09.1+_SGN-E351625- (37483 38155) Alignment (genomic DNA sequence = upper lines): CATGGATGCC TCATTGGAAA TAGGCACGTT TCCTCGTCTG ACTACAGGAC CTATAATGAT 37542 ||| ||||| |||||| || ||||||| || ||| |||||| ||||| || | ||| |||| CATAGATGCA CCATTGGGAA TAGGCACATT TCCACGTCTG ACTACTGGGC TTATTATGAC 60 AAATGATCAG CATGTACTTT TCAGTAAGTT CTTGAAATTA AAACCTCCAA TCTTCAAGGG 37602 ||| ||||| |||| ||||| |||||||||| ||||||| | ||||||||| |||||||||| AAACGATCAA CATGAACTTT TCAGTAAGTT CTTGAAACTG AAACCTCCAG TCTTCAAGGG 120 TGCTGAATCT GAGGATGCCT ACGATTTTCT GGTTGACTGT CATGAGCTAC TACACAAGAT 37662 ||| |||||| || ||||| | | |||||||| |||||| ||| |||||||||| ||||||| || TGCAGAATCT GAAGATGCTT ATGATTTTCT GGTTGATTGT CATGAGCTAC TACACAAAAT 180 GGGAATAGTA AAACGGTTTG GTGTTGAGTT TGTGACTTAT CAGTTTCAAG GAAACGCCAA 37722 ||| |||||| | |||||| | || ||||| |||| ||| ||||| |||| | |||||||| GGGGATAGTA GAGAGGTTTG GCGTCGAGTT CGTGAGCTAT CAGTTCCAAG GGAACGCCAA 240 AATGTGGTGG CGGTCACATG TTGACTGTCA ACCAACAGAG GCACCACCTA TGACTTGGGC 37782 ||||||||| || ||||||| |||| ||||| |||||||||| |||||||||| ||||||||| GATGTGGTGG CGTTCACATG TTGAGTGTCA ACCAACAGAG GCACCACCTA TGACTTGGGA 300 ATCATTCTCT AGCTTGTTTA TGGAGAAGTA TATCCCCCGG ACTTTGAGGG ATAGGAAAAG 37842 |||||||||| || ||||| | ||||||| || |||||| || |||||||| | |||||||||| ATCATTCTCT AGTTTGTTCA TGGAGAAATA TATCCCAAGG ACTTTGAGAG ATAGGAAAAG 360 AGATGAGTTC TTGAGCCTAG AGCCAGGTAG GATGTCGGTT ACTGCATATG AGGCTAAGTT 37902 ||||||||| ||||| || | | | || || |||| | || | || |||| ||||||| || GGATGAGTTC TTGAGTCTTG AACAGGGAAG GATGACAGTA AACGCGTATG AGGCTAAATT 420 TCGTGCATTA TCTAGGTATG CCACCCAACT TTGTTTCAGT CCACAAGAGC GGATTCACCA 37962 ||| ||| || || || || | |||||||||| ||||| ||| |||||||| | |||| | || TCGCGCACTA TCCAGATACG CCACCCAACT CTGTTTTAGT CCACAAGAAC GGATCCGCCG 480 TTTTGTGAAG GGGTTGAGGT CAGAACTGCG GATTTCAGCC TTACAGGTAG CGGCTACGGC 38022 |||||||||| |||||||| | ||||| |||| |||||||||| |||||| ||| |||| || || TTTTGTGAAG GGGTTGAGAT CAGAATTGCG GATTTCAGCC TTACAGATAG CGGCAACAGC 540 AAAATCCTTT CAAGAAGTGG TAGACTTCGT GATAAAGGTG GAAGGAGTGA AGCCAGATGA 38082 || ||||||| ||||| |||| ||||||| || ||| ||||| |||||||||| | || ||||| AACATCCTTT CAAGAGGTGG TAGACTTTGT GATTGAGGTG GAAGGAGTGA AACCGGATGA 600 CTTCACCATG GCATCGACAT CAAAAAGGTT TCAAAAGGGA GGTGAGTTTA ATTGTTCTTA 38142 |||||||| | ||||||||| | || ||||| | || |||| || |||| || || ||||||| CTTCACCACG ACATCGACAT CGAAGAGGTT TAGAAGGGGA GGAGAGTATA ATGGTTCTTA 660 CTCTAGAGGA CAG 38155 ||||||||| ||| TTCTAGAGGA CAG 673 hqPGS_C08HBa0027D09.1+_SGN-E351625- (37483 38155) ******************************************************************************** EST sequence 304 -strand 612 n (File: SGN-E357065-) 1 ATCAACATGA CTTTTCAGTA AGTTCTTGAA ACTGAAACCT CCAGTCTTCA AGGGTGCAGA 61 ATCTGAAGAT GCTTATGATT TTCTGGTTGA TTGTCATGAG CTACTACACA AAATGGGGAT 121 AGTAGAGAGG TTTGGCGTCG AGTTCGTGAG CTATCAGTTC CAAGGGAACG CCAAGATGTG 181 GTGGCGTTCA CATGTTGAGT GTCAACCAAC AGAGGCACCA CCTATGACTT GGGAATCATT 241 CTCTAGTTTG TTCATGGAGA AATATATCCC AAGGACTTTG AGAGATAGGA AAAGGGATGA 301 GTTCTTGAGT CTTGAACAGG GAAGGATGAC AGTAAACGCG TATGAGGCTA AATTTCGCGC 361 ACTATCCAGA TACGCCACCC AACTCTGTTT TAGTCCACAA GAACGGATCC GCCGTTTTGT 421 GAAGGGGTTG AGATCAGAAT TGCGGATTTC AGCCTTACAG ATAGCGGCAA CAGCAACATC 481 CTTTCAAGAG GTGGTAGACT TTGTGATTGA GGTGGAAGGA GTGAAACCGG ATGACTTCAC 541 CACGACATCG ACATCGAAGA GGTTTAGAAG GGGAGGAGAG TATAATGGTT CTTATTCTAG 601 AGGACAGAAC CC Predicted gene structure (within gDNA segment 35148 to 40128): Exon 1 37548 38155 ( 608 n); cDNA 1 607 ( 607 n); score: 0.868 MATCH C08HBa0027D09.1+ SGN-E357065- 0.868 608 0.993 C PGS_C08HBa0027D09.1+_SGN-E357065- (37548 38155) Alignment (genomic DNA sequence = upper lines): ATCAGCATGT ACTTTTCAGT AAGTTCTTGA AATTAAAACC TCCAATCTTC AAGGGTGCTG 37607 |||| |||| |||||||||| |||||||||| || | ||||| |||| ||||| |||||||| | ATCAACATG- ACTTTTCAGT AAGTTCTTGA AACTGAAACC TCCAGTCTTC AAGGGTGCAG 59 AATCTGAGGA TGCCTACGAT TTTCTGGTTG ACTGTCATGA GCTACTACAC AAGATGGGAA 37667 ||||||| || ||| || ||| |||||||||| | |||||||| |||||||||| || ||||| | AATCTGAAGA TGCTTATGAT TTTCTGGTTG ATTGTCATGA GCTACTACAC AAAATGGGGA 119 TAGTAAAACG GTTTGGTGTT GAGTTTGTGA CTTATCAGTT TCAAGGAAAC GCCAAAATGT 37727 ||||| | | |||||| || ||||| |||| |||||||| ||||| ||| ||||| |||| TAGTAGAGAG GTTTGGCGTC GAGTTCGTGA GCTATCAGTT CCAAGGGAAC GCCAAGATGT 179 GGTGGCGGTC ACATGTTGAC TGTCAACCAA CAGAGGCACC ACCTATGACT TGGGCATCAT 37787 ||||||| || ||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| GGTGGCGTTC ACATGTTGAG TGTCAACCAA CAGAGGCACC ACCTATGACT TGGGAATCAT 239 TCTCTAGCTT GTTTATGGAG AAGTATATCC CCCGGACTTT GAGGGATAGG AAAAGAGATG 37847 ||||||| || ||| |||||| || ||||||| | ||||||| ||| |||||| ||||| |||| TCTCTAGTTT GTTCATGGAG AAATATATCC CAAGGACTTT GAGAGATAGG AAAAGGGATG 299 AGTTCTTGAG CCTAGAGCCA GGTAGGATGT CGGTTACTGC ATATGAGGCT AAGTTTCGTG 37907 |||||||||| || || | || |||||| | || | || ||||||||| || ||||| | AGTTCTTGAG TCTTGAACAG GGAAGGATGA CAGTAAACGC GTATGAGGCT AAATTTCGCG 359 CATTATCTAG GTATGCCACC CAACTTTGTT TCAGTCCACA AGAGCGGATT CACCATTTTG 37967 || |||| || || |||||| ||||| |||| | |||||||| ||| ||||| | || ||||| CACTATCCAG ATACGCCACC CAACTCTGTT TTAGTCCACA AGAACGGATC CGCCGTTTTG 419 TGAAGGGGTT GAGGTCAGAA CTGCGGATTT CAGCCTTACA GGTAGCGGCT ACGGCAAAAT 38027 |||||||||| ||| |||||| ||||||||| |||||||||| | ||||||| || |||| || TGAAGGGGTT GAGATCAGAA TTGCGGATTT CAGCCTTACA GATAGCGGCA ACAGCAACAT 479 CCTTTCAAGA AGTGGTAGAC TTCGTGATAA AGGTGGAAGG AGTGAAGCCA GATGACTTCA 38087 |||||||||| ||||||||| || ||||| |||||||||| |||||| || |||||||||| CCTTTCAAGA GGTGGTAGAC TTTGTGATTG AGGTGGAAGG AGTGAAACCG GATGACTTCA 539 CCATGGCATC GACATCAAAA AGGTTTCAAA AGGGAGGTGA GTTTAATTGT TCTTACTCTA 38147 ||| | |||| |||||| || |||||| || |||||| || || |||| || ||||| |||| CCACGACATC GACATCGAAG AGGTTTAGAA GGGGAGGAGA GTATAATGGT TCTTATTCTA 599 GAGGACAG 38155 |||||||| GAGGACAG 607 hqPGS_C08HBa0027D09.1+_SGN-E357065- (37548 38155) ******************************************************************************** EST sequence 201 -strand 524 n (File: SGN-E352365-) 1 ATTGTCATGA GCTACTACAC AAAATGGGGA TAGTAGAGAG GTTTGGCGTC GAGTTCGTGA 61 GCTATCAGTT CCAAGGGAAC GCCAAGATGT GGTGGCGTTC ACATGTTGAG TGTCAACCAA 121 CAGAGGCACC ACCTATGACT TGGGAATCAT TCTCTAGTTT GTTCATGGAG AAATATATCC 181 CAAGGACTTT GAGAGATAGG AAAAGGGATG AGTTCTTGAG TCTTGAACAG GGAAGGATGA 241 CAGTAAACGC GTATGAGGCT AAATTTCGCG CACTATCCAG ATACGCCACC CAACTCTGTT 301 TTAGTCCACA AGAACGGATC CGCCGTTTTG TGAAGGGGTT GAGATCAGAA TTGCGGATTT 361 CAGCCTTACA GATAGCGGCA ACAGCAACAT CCTTTCAAGA GGTGGTAGAC TTTGTGATTG 421 AGGTGGAAGG AGTGAAACCG GATGACTTCA CCACGACATC GACATCGAAG AGGTTTAGAA 481 GGGGAGGAGA GTATAATGGT TCTTATTCTA GAGGACAGAA CCCC Predicted gene structure (within gDNA segment 36038 to 40138): Exon 1 37640 38155 ( 516 n); cDNA 3 518 ( 516 n); score: 0.864 MATCH C08HBa0027D09.1+ SGN-E352365- 0.864 516 0.985 C PGS_C08HBa0027D09.1+_SGN-E352365- (37640 38155) Alignment (genomic DNA sequence = upper lines): TGTCATGAGC TACTACACAA GATGGGAATA GTAAAACGGT TTGGTGTTGA GTTTGTGACT 37699 |||||||||| |||||||||| ||||| ||| ||| | ||| |||| || || ||| |||| TGTCATGAGC TACTACACAA AATGGGGATA GTAGAGAGGT TTGGCGTCGA GTTCGTGAGC 62 TATCAGTTTC AAGGAAACGC CAAAATGTGG TGGCGGTCAC ATGTTGACTG TCAACCAACA 37759 |||||||| | |||| ||||| ||| |||||| ||||| |||| ||||||| || |||||||||| TATCAGTTCC AAGGGAACGC CAAGATGTGG TGGCGTTCAC ATGTTGAGTG TCAACCAACA 122 GAGGCACCAC CTATGACTTG GGCATCATTC TCTAGCTTGT TTATGGAGAA GTATATCCCC 37819 |||||||||| |||||||||| || ||||||| ||||| |||| | |||||||| |||||||| GAGGCACCAC CTATGACTTG GGAATCATTC TCTAGTTTGT TCATGGAGAA ATATATCCCA 182 CGGACTTTGA GGGATAGGAA AAGAGATGAG TTCTTGAGCC TAGAGCCAGG TAGGATGTCG 37879 ||||||||| | |||||||| ||| |||||| |||||||| | | || | || |||||| | AGGACTTTGA GAGATAGGAA AAGGGATGAG TTCTTGAGTC TTGAACAGGG AAGGATGACA 242 GTTACTGCAT ATGAGGCTAA GTTTCGTGCA TTATCTAGGT ATGCCACCCA ACTTTGTTTC 37939 || | || | |||||||||| ||||| ||| |||| || | | |||||||| ||| ||||| GTAAACGCGT ATGAGGCTAA ATTTCGCGCA CTATCCAGAT ACGCCACCCA ACTCTGTTTT 302 AGTCCACAAG AGCGGATTCA CCATTTTGTG AAGGGGTTGA GGTCAGAACT GCGGATTTCA 37999 |||||||||| | ||||| | || ||||||| |||||||||| | |||||| | |||||||||| AGTCCACAAG AACGGATCCG CCGTTTTGTG AAGGGGTTGA GATCAGAATT GCGGATTTCA 362 GCCTTACAGG TAGCGGCTAC GGCAAAATCC TTTCAAGAAG TGGTAGACTT CGTGATAAAG 38059 ||||||||| ||||||| || |||| |||| |||||||| | |||||||||| ||||| || GCCTTACAGA TAGCGGCAAC AGCAACATCC TTTCAAGAGG TGGTAGACTT TGTGATTGAG 422 GTGGAAGGAG TGAAGCCAGA TGACTTCACC ATGGCATCGA CATCAAAAAG GTTTCAAAAG 38119 |||||||||| |||| || || |||||||||| | | |||||| |||| || || |||| || | GTGGAAGGAG TGAAACCGGA TGACTTCACC ACGACATCGA CATCGAAGAG GTTTAGAAGG 482 GGAGGTGAGT TTAATTGTTC TTACTCTAGA GGACAG 38155 ||||| |||| |||| |||| ||| |||||| |||||| GGAGGAGAGT ATAATGGTTC TTATTCTAGA GGACAG 518 hqPGS_C08HBa0027D09.1+_SGN-E352365- (37640 38155) ******************************************************************************** EST sequence 301 -strand 790 n (File: SGN-E356912-) 1 AAGTATATCC CCCGGACTTT GAGGGATAGG AAAAGAGATG AGTTCCTGAG CCTAGAGCAA 61 GGTAGGATGT CGGTTAATGC TTATGAGGCT AAGTTCCGTG CACTATCCGG ATATGCCACT 121 CAACTCTGTT TCAGTCCTCA AGAGCGGATT CTCCGGTTTG TGAAGGGGTT GAGGTCAGAA 181 TTGCGGATTT CGGCCTTACA GGTAGCGGCA ACGGCAAAAT CCTTCCAAGA AGTGGTAGAC 241 TTTGTGATAG AAGTGGAAGG AGTGAAGCCA GACGACTTCA CCACGACATC AACATCAAAG 301 AGGTTTCGAA AGGGAGGTGA GTTTAAGGGT TCTTACTCTA GAGGACAAGG TTCCGGAGGT 361 TACTCGGCTC GACCCATTCA GTCTTCACTA CAGACTGTAG TTGGGGGTCC ACCTCAGACC 421 GGTCAACACT TCTCCAAGGG GCCTATGAGT GACTCCAGAG AATGTTATGG ATGTGGGGAG 481 ATTGGACATA TTAGGATAAA TTGTCCTGGA CCAAGTTATA GACCCCCAAT AGCTAGAGGT 541 AGAGGTGGTC ATGGTAGAGG CCGTTATTCT GGAGGACGTG GTGGTCGAGG TAATGGTGGT 601 CACCAAAACG GCAGAGGTAA TGGGCAAACT GGGGCCACTA CATCACAACA TGGTAGGGGC 661 AATGGGCAGA CAAACGATAG GGCCCATTGT TACGCTTTCC CTGGGCGGTC TGAAGCGGAG 721 GCATCTGATG CTGTCATCAC AGGTAATCTT CTAGTTTGTG ATTGCATGGC TTCCGTATTG 781 TTTGATCCTG Predicted gene structure (within gDNA segment 37198 to 39350): Exon 1 37808 38597 ( 790 n); cDNA 1 790 ( 790 n); score: 0.901 MATCH C08HBa0027D09.1+ SGN-E356912- 0.901 790 1.000 C PGS_C08HBa0027D09.1+_SGN-E356912- (37808 38597) Alignment (genomic DNA sequence = upper lines): AAGTATATCC CCCGGACTTT GAGGGATAGG AAAAGAGATG AGTTCTTGAG CCTAGAGCCA 37867 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||| | AAGTATATCC CCCGGACTTT GAGGGATAGG AAAAGAGATG AGTTCCTGAG CCTAGAGCAA 60 GGTAGGATGT CGGTTACTGC ATATGAGGCT AAGTTTCGTG CATTATCTAG GTATGCCACC 37927 |||||||||| |||||| ||| ||||||||| ||||| |||| || |||| | |||||||| GGTAGGATGT CGGTTAATGC TTATGAGGCT AAGTTCCGTG CACTATCCGG ATATGCCACT 120 CAACTTTGTT TCAGTCCACA AGAGCGGATT CACCATTTTG TGAAGGGGTT GAGGTCAGAA 37987 ||||| |||| ||||||| || |||||||||| | || |||| |||||||||| |||||||||| CAACTCTGTT TCAGTCCTCA AGAGCGGATT CTCCGGTTTG TGAAGGGGTT GAGGTCAGAA 180 CTGCGGATTT CAGCCTTACA GGTAGCGGCT ACGGCAAAAT CCTTTCAAGA AGTGGTAGAC 38047 ||||||||| | |||||||| ||||||||| |||||||||| |||| ||||| |||||||||| TTGCGGATTT CGGCCTTACA GGTAGCGGCA ACGGCAAAAT CCTTCCAAGA AGTGGTAGAC 240 TTCGTGATAA AGGTGGAAGG AGTGAAGCCA GATGACTTCA CCATGGCATC GACATCAAAA 38107 || |||||| | |||||||| |||||||||| || ||||||| ||| | |||| |||||||| TTTGTGATAG AAGTGGAAGG AGTGAAGCCA GACGACTTCA CCACGACATC AACATCAAAG 300 AGGTTTCAAA AGGGAGGTGA GTTTAATTGT TCTTACTCTA GAGGACAGGG TTCAGAAGGT 38167 ||||||| || |||||||||| |||||| || |||||||||| ||||||| || ||| | |||| AGGTTTCGAA AGGGAGGTGA GTTTAAGGGT TCTTACTCTA GAGGACAAGG TTCCGGAGGT 360 TACTCAGTCC GACCAATTCA GTCTTCACTA CAGACTGTAG TTGGGGGTCC ACCTCAGACC 38227 ||||| | | |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTCGGCTC GACCCATTCA GTCTTCACTA CAGACTGTAG TTGGGGGTCC ACCTCAGACC 420 GGTCAACACT TCTATGAGAG ACCTATGCTT GACTCCAGGG AGTGTTATGG ATGTGGGGAG 38287 |||||||||| ||| || | |||||| | |||||||| | | |||||||| |||||||||| GGTCAACACT TCTCCAAGGG GCCTATGAGT GACTCCAGAG AATGTTATGG ATGTGGGGAG 480 ACTGGACATA TTAGGAGGAA TTGTCCAAAA CAGAGTTATA TACCCCCAAT AGCTAGAGGT 38347 | |||||||| |||||| || |||||| | | ||||||| ||||||||| |||||||||| ATTGGACATA TTAGGATAAA TTGTCCTGGA CCAAGTTATA GACCCCCAAT AGCTAGAGGT 540 AGAGGTGGTC ATGGTAGAGG CCGTTATTTT GGAGAACGCG GTGGCCGAGG TAATGGTGGT 38407 |||||||||| |||||||||| |||||||| | |||| ||| | |||| ||||| |||||||||| AGAGGTGGTC ATGGTAGAGG CCGTTATTCT GGAGGACGTG GTGGTCGAGG TAATGGTGGT 600 CACTAAAACG GCTGGGGTAA CGGGCAAACT GGAGCCACTA CAGCACAACA TGGTAGGGGC 38467 ||| |||||| || | ||||| ||||||||| || ||||||| || ||||||| |||||||||| CACCAAAACG GCAGAGGTAA TGGGCAAACT GGGGCCACTA CATCACAACA TGGTAGGGGC 660 AACGGGCAGA CAGGTGATAG GGCCCATTGT TATGCTTTCC CTGGGAGATC TGAAGCGGAG 38527 || ||||||| || ||||| |||||||||| || ||||||| ||||| | || |||||||||| AATGGGCAGA CAAACGATAG GGCCCATTGT TACGCTTTCC CTGGGCGGTC TGAAGCGGAG 720 ACATCTGATG CTGTCATCAC AGGTAATCTT TTGGTTTGTG ATTGCATGGC TTCTGTATTT 38587 ||||||||| |||||||||| |||||||||| | ||||||| |||||||||| ||| ||||| GCATCTGATG CTGTCATCAC AGGTAATCTT CTAGTTTGTG ATTGCATGGC TTCCGTATTG 780 TTTGATCATG 38597 ||||||| || TTTGATCCTG 790 hqPGS_C08HBa0027D09.1+_SGN-E356912- (37808 38597) ******************************************************************************** EST sequence 288 -strand 698 n (File: SGN-E356209-) 1 CTTTGAGGGA TAGGAAAAGG GATGAGTTCT TGAGCCTAGA GCAAGGTAGG ATGTCGGTTA 61 ATGCTTATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC CACTCAACTC TGTTTCAGTC 121 CTCAAGAGCG GATTCGCCGG TTTGTGAAGG GGTTGAGGTC AGAATTGCGG ATTTCGTCCT 181 TACAGATAGC GGCAACGGCA AAATCCTTCC AAGAAGTGGT AGACTTTGTG ATAGAAGTGG 241 AAGGAGTGAA GCCAGACGAC TTCACCACAA CATCGACATC AAAAAGGTTT CGGAAGGGAG 301 GTGAGTTTAA TGGTTCTTAC ACTAGAGGAC AGGGTTCGGG AAGTTACTCA GTCCGACCAA 361 TTCAGTCTTC ACTACAGACT GTAGTTGGGA GACCACCTCA GACCGGTTAA CACTTCTCCG 421 AGGGGCCTAT GCTTGACTCC AGAGAATGTT ATGGATGTGG GGAGATTGGA CATATTAGGA 481 AAAATTGTCC CAGACAAAGT TATAGACCCC CAATAGCTAG AGGTAGAGGT GGTCATGGTA 541 GAGGCCGTTA TTCTGGAGGA CGTGGTGGTC GAGGTAATGG TGGTCACCAA AATGGCAGAG 601 GTAATGGGCA AACTGGGGCC ACTACATCAC AACATGGTAG GGGCAACGGA CAGACGAACG 661 ATAGGGCCCA TTGTTACGCT TTCCCTGGGC GGTCTGAA Predicted gene structure (within gDNA segment 37214 to 39319): Exon 1 37824 38521 ( 698 n); cDNA 1 698 ( 698 n); score: 0.903 MATCH C08HBa0027D09.1+ SGN-E356209- 0.903 698 1.000 C PGS_C08HBa0027D09.1+_SGN-E356209- (37824 38521) Alignment (genomic DNA sequence = upper lines): CTTTGAGGGA TAGGAAAAGA GATGAGTTCT TGAGCCTAGA GCCAGGTAGG ATGTCGGTTA 37883 |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CTTTGAGGGA TAGGAAAAGG GATGAGTTCT TGAGCCTAGA GCAAGGTAGG ATGTCGGTTA 60 CTGCATATGA GGCTAAGTTT CGTGCATTAT CTAGGTATGC CACCCAACTT TGTTTCAGTC 37943 ||| ||||| |||||||||| |||||| ||| | || ||||| ||| ||||| |||||||||| ATGCTTATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC CACTCAACTC TGTTTCAGTC 120 CACAAGAGCG GATTCACCAT TTTGTGAAGG GGTTGAGGTC AGAACTGCGG ATTTCAGCCT 38003 | |||||||| ||||| || |||||||||| |||||||||| |||| ||||| ||||| ||| CTCAAGAGCG GATTCGCCGG TTTGTGAAGG GGTTGAGGTC AGAATTGCGG ATTTCGTCCT 180 TACAGGTAGC GGCTACGGCA AAATCCTTTC AAGAAGTGGT AGACTTCGTG ATAAAGGTGG 38063 ||||| |||| ||| |||||| |||||||| | |||||||||| |||||| ||| ||| | |||| TACAGATAGC GGCAACGGCA AAATCCTTCC AAGAAGTGGT AGACTTTGTG ATAGAAGTGG 240 AAGGAGTGAA GCCAGATGAC TTCACCATGG CATCGACATC AAAAAGGTTT CAAAAGGGAG 38123 |||||||||| |||||| ||| ||||||| |||||||||| |||||||||| | ||||||| AAGGAGTGAA GCCAGACGAC TTCACCACAA CATCGACATC AAAAAGGTTT CGGAAGGGAG 300 GTGAGTTTAA TTGTTCTTAC TCTAGAGGAC AGGGTTCAGA AGGTTACTCA GTCCGACCAA 38183 |||||||||| | |||||||| ||||||||| ||||||| | | |||||||| |||||||||| GTGAGTTTAA TGGTTCTTAC ACTAGAGGAC AGGGTTCGGG AAGTTACTCA GTCCGACCAA 360 TTCAGTCTTC ACTACAGACT GTAGTTGGGG GTCCACCTCA GACCGGTCAA CACTTCTATG 38243 |||||||||| |||||||||| ||||||||| | |||||||| ||||||| || ||||||| | TTCAGTCTTC ACTACAGACT GTAGTTGGGA GACCACCTCA GACCGGTTAA CACTTCTCCG 420 AGAGACCTAT GCTTGACTCC AGGGAGTGTT ATGGATGTGG GGAGACTGGA CATATTAGGA 38303 || | ||||| |||||||||| || || |||| |||||||||| ||||| |||| |||||||||| AGGGGCCTAT GCTTGACTCC AGAGAATGTT ATGGATGTGG GGAGATTGGA CATATTAGGA 480 GGAATTGTCC AAAACAGAGT TATATACCCC CAATAGCTAG AGGTAGAGGT GGTCATGGTA 38363 |||||||| | ||| ||| |||| ||||| |||||||||| |||||||||| |||||||||| AAAATTGTCC CAGACAAAGT TATAGACCCC CAATAGCTAG AGGTAGAGGT GGTCATGGTA 540 GAGGCCGTTA TTTTGGAGAA CGCGGTGGCC GAGGTAATGG TGGTCACTAA AACGGCTGGG 38423 |||||||||| || ||||| | || ||||| | |||||||||| ||||||| || || ||| | | GAGGCCGTTA TTCTGGAGGA CGTGGTGGTC GAGGTAATGG TGGTCACCAA AATGGCAGAG 600 GTAACGGGCA AACTGGAGCC ACTACAGCAC AACATGGTAG GGGCAACGGG CAGACAGGTG 38483 |||| ||||| |||||| ||| |||||| ||| |||||||||| ||||||||| ||||| | GTAATGGGCA AACTGGGGCC ACTACATCAC AACATGGTAG GGGCAACGGA CAGACGAACG 660 ATAGGGCCCA TTGTTATGCT TTCCCTGGGA GATCTGAA 38521 |||||||||| |||||| ||| ||||||||| | |||||| ATAGGGCCCA TTGTTACGCT TTCCCTGGGC GGTCTGAA 698 hqPGS_C08HBa0027D09.1+_SGN-E356209- (37824 38521) ******************************************************************************** EST sequence 235 -strand 763 n (File: SGN-E214046-) 1 CCAGATATGC CACTCAACTC TGTTCAGTCC CTCAAGAGCG GATTCGCCGG TTGTGAAGGG 61 GTTGAGGTCA GAATTGCGGA TTTCGCCCTT ACAGGTAGCG GCAACGGCAA AATCCTTCCA 121 AGAAGTGGTA GACTTTTTGA TAGAAGTGGA AGGAGTGAAA CCAGACGACT TCACCACGAC 181 ATCGACATCG ATGAGGTTTC AAAGGGGAGA TGAGTTTAAG GGTTCTTACT CTAGAGGACA 241 AGGTTCTGGA GGTTACTCAG TTCGACCCAT TCAGTCTTCA CTACAAACTG TAGTTGGGGG 301 TCCACCTCAG ACCGGTCAAC ACTTCTCCGA GGGGCCTATG AGTGACTCTA GAGAATGTTA 361 TGGATGTGGG GAGATTGGAC ATATTAGGAG AAATTTTCCC GGACCAAGTT ATAGACCCCC 421 AATAGTTAGA GGTAGAGGTT GTCATGGTAG AGGCCGTTAT TTTGGAGGAC GTGGTGGTCG 481 AGGCAATGGT GGTCACCAAA ACGGCAGAGG TAATGGACAA ACTGGGGCCA CTACATCACG 541 ACATGGTAGG GGCAATGGAC AAACAAACTA TAGGGCCCAT TGTTACGCTT TCCCTGGGCG 601 GTCTAAAGCG GAGGCATCTG ATGCTGTCAT CACAGGTAAT CTTCTTGTTT GTGATTGCAT 661 GGCTTCCGTA TTGTTTGATC CTGGATCCAC GTTTTCTTAT GTATCTTCCT CATTTGCTAA 721 TGGTCTAAAT TTACATTGTG AATTTCTTGA TATGCCTATT CGT Predicted gene structure (within gDNA segment 36855 to 39610): Exon 1 37916 38677 ( 762 n); cDNA 3 763 ( 761 n); score: 0.880 MATCH C08HBa0027D09.1+ SGN-E214046- 0.880 762 0.999 C PGS_C08HBa0027D09.1+_SGN-E214046- (37916 38677) Alignment (genomic DNA sequence = upper lines): AGGTATGCCA CCCAACTTTG TTTCAGT-CC ACAAGAGCGG ATTCACCATT TTGTGAAGGG 37974 || ||||||| | ||||| || |||||| || ||||||||| |||| || |||||||||| AGATATGCCA CTCAACTCTG -TTCAGTCCC TCAAGAGCGG ATTCGCC-GG TTGTGAAGGG 60 GTTGAGGTCA GAACTGCGGA TTTCAGCCTT ACAGGTAGCG GCTACGGCAA AATCCTTTCA 38034 |||||||||| ||| |||||| |||| |||| |||||||||| || ||||||| ||||||| || GTTGAGGTCA GAATTGCGGA TTTCGCCCTT ACAGGTAGCG GCAACGGCAA AATCCTTCCA 120 AGAAGTGGTA GACTTCGTGA TAAAGGTGGA AGGAGTGAAG CCAGATGACT TCACCATGGC 38094 |||||||||| ||||| ||| || | ||||| ||||||||| ||||| |||| |||||| | | AGAAGTGGTA GACTTTTTGA TAGAAGTGGA AGGAGTGAAA CCAGACGACT TCACCACGAC 180 ATCGACATCA AAAAGGTTTC AAAAGGGAGG TGAGTTTAAT TGTTCTTACT CTAGAGGACA 38154 ||||||||| | ||||||| ||| ||||| ||||||||| ||||||||| |||||||||| ATCGACATCG ATGAGGTTTC AAAGGGGAGA TGAGTTTAAG GGTTCTTACT CTAGAGGACA 240 GGGTTCAGAA GGTTACTCAG TCCGACCAAT TCAGTCTTCA CTACAGACTG TAGTTGGGGG 38214 ||||| | | |||||||||| | ||||| || |||||||||| ||||| |||| |||||||||| AGGTTCTGGA GGTTACTCAG TTCGACCCAT TCAGTCTTCA CTACAAACTG TAGTTGGGGG 300 TCCACCTCAG ACCGGTCAAC ACTTCTATGA GAGACCTATG CTTGACTCCA GGGAGTGTTA 38274 |||||||||| |||||||||| |||||| || | | |||||| |||||| | | || ||||| TCCACCTCAG ACCGGTCAAC ACTTCTCCGA GGGGCCTATG AGTGACTCTA GAGAATGTTA 360 TGGATGTGGG GAGACTGGAC ATATTAGGAG GAATTGTCCA AAACAGAGTT ATATACCCCC 38334 |||||||||| |||| ||||| |||||||||| |||| ||| || |||| ||| |||||| TGGATGTGGG GAGATTGGAC ATATTAGGAG AAATTTTCCC GGACCAAGTT ATAGACCCCC 420 AATAGCTAGA GGTAGAGGTG GTCATGGTAG AGGCCGTTAT TTTGGAGAAC GCGGTGGCCG 38394 ||||| |||| ||||||||| |||||||||| |||||||||| ||||||| || | ||||| || AATAGTTAGA GGTAGAGGTT GTCATGGTAG AGGCCGTTAT TTTGGAGGAC GTGGTGGTCG 480 AGGTAATGGT GGTCACTAAA ACGGCTGGGG TAACGGGCAA ACTGGAGCCA CTACAGCACA 38454 ||| |||||| |||||| ||| ||||| | || ||| || ||| ||||| |||| ||||| ||| AGGCAATGGT GGTCACCAAA ACGGCAGAGG TAATGGACAA ACTGGGGCCA CTACATCACG 540 ACATGGTAGG GGCAACGGGC AGACAGGTGA TAGGGCCCAT TGTTATGCTT TCCCTGGGAG 38514 |||||||||| ||||| || | | ||| | |||||||||| ||||| |||| |||||||| | ACATGGTAGG GGCAATGGAC AAACAAACTA TAGGGCCCAT TGTTACGCTT TCCCTGGGCG 600 ATCTGAAGCG GAGACATCTG ATGCTGTCAT CACAGGTAAT CTTTTGGTTT GTGATTGCAT 38574 ||| ||||| ||| |||||| |||||||||| |||||||||| ||| | |||| |||||||||| GTCTAAAGCG GAGGCATCTG ATGCTGTCAT CACAGGTAAT CTTCTTGTTT GTGATTGCAT 660 GGCTTCTGTA TTTTTTGATC ATGGATCCAC ATTTTCTTAT GTATCTTCCT CATTTGCTAA 38634 |||||| ||| || ||||||| ||||||||| ||||||||| |||||||||| |||||||||| GGCTTCCGTA TTGTTTGATC CTGGATCCAC GTTTTCTTAT GTATCTTCCT CATTTGCTAA 720 TGGTCTTAAT TTACATTGTG AACTGCTTGA CATGCCTATT CGT 38677 |||||| ||| |||||||||| || | ||||| ||||||||| ||| TGGTCTAAAT TTACATTGTG AATTTCTTGA TATGCCTATT CGT 763 hqPGS_C08HBa0027D09.1+_SGN-E214046- (37916 38677) ******************************************************************************** EST sequence 226 -strand 533 n (File: SGN-E353805-) 1 GGAAGGAGTG AAGCCAGACG ACTTCACCAC GACATCAACA TCAAAGAGGT TTCGAAAGGG 61 AGGTGAGTTT AAGGGTTCTT ACTTTAGAGG ACAAGGTTCC GGAGGTTACT CGGCTCGACC 121 CATTCAGTCT TCACTACAGA CTGTAGTTGG GGGTCCACCT CAGACCGGTC AACACTTCTC 181 CAAGGGGCCT ATGAGTGACT CCAGAGAATG TTATGGATGT GGGGAGATTG GACATATTAG 241 GATAAATTGT CCTGGACCAA GTTATAGACC CCCAATAGCT AGAGGTAGAG GTGGTCATGG 301 TAGAGGCCGT TATTCTGGAG GACGTGGTGG TCGAGGTAAT GGTGGTCACC AAAACGGCAG 361 AGGTAATGGG CAAACTGGGG CCACTACATC ACAACATGGT AGGGGCAATG GGCAGACAAA 421 CGATAGGGCC CATTGTTACG CTTTCCCTGG GCGGTCTGAA GCGGAGGCAT CTGATGCTGT 481 CATCACAGGT AATCTTCTAG TTTGTGATTG CATGGCTTCC GTATTGTTGA TCC Predicted gene structure (within gDNA segment 36363 to 39320): Exon 1 38062 38594 ( 533 n); cDNA 1 532 ( 532 n); score: 0.893 MATCH C08HBa0027D09.1+ SGN-E353805- 0.893 533 1.000 C PGS_C08HBa0027D09.1+_SGN-E353805- (38062 38594) Alignment (genomic DNA sequence = upper lines): GGAAGGAGTG AAGCCAGATG ACTTCACCAT GGCATCGACA TCAAAAAGGT TTCAAAAGGG 38121 |||||||||| |||||||| | ||||||||| | |||| ||| ||||| |||| ||| |||||| GGAAGGAGTG AAGCCAGACG ACTTCACCAC GACATCAACA TCAAAGAGGT TTCGAAAGGG 60 AGGTGAGTTT AATTGTTCTT ACTCTAGAGG ACAGGGTTCA GAAGGTTACT CAGTCCGACC 38181 |||||||||| || |||||| ||| |||||| ||| ||||| | |||||||| | | ||||| AGGTGAGTTT AAGGGTTCTT ACTTTAGAGG ACAAGGTTCC GGAGGTTACT CGGCTCGACC 120 AATTCAGTCT TCACTACAGA CTGTAGTTGG GGGTCCACCT CAGACCGGTC AACACTTCTA 38241 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CATTCAGTCT TCACTACAGA CTGTAGTTGG GGGTCCACCT CAGACCGGTC AACACTTCTC 180 TGAGAGACCT ATGCTTGACT CCAGGGAGTG TTATGGATGT GGGGAGACTG GACATATTAG 38301 || | ||| ||| ||||| |||| || || |||||||||| ||||||| || |||||||||| CAAGGGGCCT ATGAGTGACT CCAGAGAATG TTATGGATGT GGGGAGATTG GACATATTAG 240 GAGGAATTGT CCAAAACAGA GTTATATACC CCCAATAGCT AGAGGTAGAG GTGGTCATGG 38361 || |||||| || || | |||||| ||| |||||||||| |||||||||| |||||||||| GATAAATTGT CCTGGACCAA GTTATAGACC CCCAATAGCT AGAGGTAGAG GTGGTCATGG 300 TAGAGGCCGT TATTTTGGAG AACGCGGTGG CCGAGGTAAT GGTGGTCACT AAAACGGCTG 38421 |||||||||| |||| ||||| ||| ||||| ||||||||| ||||||||| |||||||| | TAGAGGCCGT TATTCTGGAG GACGTGGTGG TCGAGGTAAT GGTGGTCACC AAAACGGCAG 360 GGGTAACGGG CAAACTGGAG CCACTACAGC ACAACATGGT AGGGGCAACG GGCAGACAGG 38481 ||||| ||| |||||||| | |||||||| | |||||||||| |||||||| | |||||||| AGGTAATGGG CAAACTGGGG CCACTACATC ACAACATGGT AGGGGCAATG GGCAGACAAA 420 TGATAGGGCC CATTGTTATG CTTTCCCTGG GAGATCTGAA GCGGAGACAT CTGATGCTGT 38541 ||||||||| |||||||| | |||||||||| | | |||||| |||||| ||| |||||||||| CGATAGGGCC CATTGTTACG CTTTCCCTGG GCGGTCTGAA GCGGAGGCAT CTGATGCTGT 480 CATCACAGGT AATCTTTTGG TTTGTGATTG CATGGCTTCT GTATTTTTTG ATC 38594 |||||||||| |||||| | | |||||||||| ||||||||| ||| || ||| ||| CATCACAGGT AATCTTCTAG TTTGTGATTG CATGGCTTCC GTA-TTGTTG ATC 532 hqPGS_C08HBa0027D09.1+_SGN-E353805- (38062 38594) ******************************************************************************** EST sequence 180 -strand 716 n (File: SGN-E577713-) 1 AAAAAGGCTT CGAAAGGGAG GTGAGTTTAA TGGTTCTTAC ACTAGAGGAC AGGGTTCGGG 61 AAGTTACTCA GTCCGACCAA TTGAGTCTTC ACTACAGACT GTAGTTGGGG GACCACCTCA 121 GACCGGTCAA CACTTCTCCG AGGGGCCTAG GATTGACTCC AGAGAATGGT ATGGATGTGG 181 GGAGATTGGA CATATTAGGA AAAATTGTCC CAGACAAAGT TATAGACCCC CAATAGCTAG 241 AGGTAGAGGT GGTCATGGTA GAGGCCGTTA TTCTGGAGGA CGTGGTGGTC GAGGTAATGG 301 TGGTCACCAA AACGGCAGAG GTAATGGGCA AACTTGGGCC ACTACATCAC AACATGGTAG 361 GGGCAACGGA CAGACGAACG ATAGGGCCCA TTGTTACGCT TTCCCTGGGC GGTGTGAAGC 421 GGAGGCATCT GATGTTGTCA TCACAGGTAA TCTTCTGGTT TGTGATTGCA TGGCTTCTGT 481 ATTGTTTGAT CCTGGATCCA CGTTTTCTTA TGTATCTTCC TTATTTGCTT TCTTTTCCTC 541 TGGCTACTAA GATGTTTCAG TTCGCCAGGT TGTCTCTTGC CTGCCCATGG ATTCAGCAGC 601 AGTTCGAAAG GTTGCCCTAT TCGGGAATCT CCGGATCTAT GCTTATTTTC AACTCCCCGA 661 AGCATTTCGT CGATTACTAC GCCCTTCCTC GTCTCTGGGT GCCTAGGTAT CCACCG Predicted gene structure (within gDNA segment 37386 to 41516): Exon 1 38104 38632 ( 529 n); cDNA 1 529 ( 529 n); score: 0.902 MATCH C08HBa0027D09.1+ SGN-E577713- 0.902 529 0.739 C PGS_C08HBa0027D09.1+_SGN-E577713- (38104 38632) Alignment (genomic DNA sequence = upper lines): AAAAAGGTTT CAAAAGGGAG GTGAGTTTAA TTGTTCTTAC TCTAGAGGAC AGGGTTCAGA 38163 ||||||| || | |||||||| |||||||||| | |||||||| ||||||||| ||||||| | AAAAAGGCTT CGAAAGGGAG GTGAGTTTAA TGGTTCTTAC ACTAGAGGAC AGGGTTCGGG 60 AGGTTACTCA GTCCGACCAA TTCAGTCTTC ACTACAGACT GTAGTTGGGG GTCCACCTCA 38223 | |||||||| |||||||||| || ||||||| |||||||||| |||||||||| | |||||||| AAGTTACTCA GTCCGACCAA TTGAGTCTTC ACTACAGACT GTAGTTGGGG GACCACCTCA 120 GACCGGTCAA CACTTCTATG AGAGACCTAT GCTTGACTCC AGGGAGTGTT ATGGATGTGG 38283 |||||||||| ||||||| | || | |||| | |||||||| || || || | |||||||||| GACCGGTCAA CACTTCTCCG AGGGGCCTAG GATTGACTCC AGAGAATGGT ATGGATGTGG 180 GGAGACTGGA CATATTAGGA GGAATTGTCC AAAACAGAGT TATATACCCC CAATAGCTAG 38343 ||||| |||| |||||||||| |||||||| | ||| ||| |||| ||||| |||||||||| GGAGATTGGA CATATTAGGA AAAATTGTCC CAGACAAAGT TATAGACCCC CAATAGCTAG 240 AGGTAGAGGT GGTCATGGTA GAGGCCGTTA TTTTGGAGAA CGCGGTGGCC GAGGTAATGG 38403 |||||||||| |||||||||| |||||||||| || ||||| | || ||||| | |||||||||| AGGTAGAGGT GGTCATGGTA GAGGCCGTTA TTCTGGAGGA CGTGGTGGTC GAGGTAATGG 300 TGGTCACTAA AACGGCTGGG GTAACGGGCA AACTGGAGCC ACTACAGCAC AACATGGTAG 38463 ||||||| || |||||| | | |||| ||||| |||| | ||| |||||| ||| |||||||||| TGGTCACCAA AACGGCAGAG GTAATGGGCA AACTTGGGCC ACTACATCAC AACATGGTAG 360 GGGCAACGGG CAGACAGGTG ATAGGGCCCA TTGTTATGCT TTCCCTGGGA GATCTGAAGC 38523 ||||||||| ||||| | |||||||||| |||||| ||| ||||||||| | | |||||| GGGCAACGGA CAGACGAACG ATAGGGCCCA TTGTTACGCT TTCCCTGGGC GGTGTGAAGC 420 GGAGACATCT GATGCTGTCA TCACAGGTAA TCTTTTGGTT TGTGATTGCA TGGCTTCTGT 38583 |||| ||||| |||| ||||| |||||||||| |||| ||||| |||||||||| |||||||||| GGAGGCATCT GATGTTGTCA TCACAGGTAA TCTTCTGGTT TGTGATTGCA TGGCTTCTGT 480 ATTTTTTGAT CATGGATCCA CATTTTCTTA TGTATCTTCC TCATTTGCT 38632 ||| |||||| | |||||||| | |||||||| |||||||||| | ||||||| ATTGTTTGAT CCTGGATCCA CGTTTTCTTA TGTATCTTCC TTATTTGCT 529 hqPGS_C08HBa0027D09.1+_SGN-E577713- (38104 38632) ******************************************************************************** EST sequence 240 -strand 559 n (File: SGN-E244046-) 1 GGTGAGTTTA ATGGTGCTTA CACTAGAGGA CAGGGTTCGG GAAGTTACTC AGTCCGACCA 61 ATTCAGTCTT CACTACAGAC TGTAGTTGGG GGTCCACCTT CGACCGGTCA ACACTTCTCT 121 GAGAGACTTA TGCATGAACC CAGAGAGTGC TATGGGTGTG GGGAGATTGG ACATATTAAG 181 AGATATTGTC CAAAACAGAG TTACAGACCT CCAAAGGTTA GAGGTAGAGG TGGTCATGGC 241 AGAGTCCGTT ATTCTGGAGG ACGTGGCGGT CGAGGAAATG GTGGTCACCA AAACGGCCGA 301 GGTGATGGGC AAACTGGAGC CACTACATCA CAACATGGTA GGGGCAACAG ACATAAGAAT 361 GATAGGGCCC ATTGTTACGC TTTCCCTGGG CGGTCTGAAG CGGAGGAATC TGATGTTGTC 421 ATCACAGGTA ATCTTTTGGT TTGTGATTGC ATGGCTTCTG TATTGTTTGA TCCTGGATCC 481 ACATTTTCTT ATGTATCTTC CTCATTTGCT AATGGTCTAA CTTTACATTG TGAATTACTT 541 GATATGCCTA TTCGTGTTT Predicted gene structure (within gDNA segment 37315 to 39650): Exon 1 38123 38681 ( 559 n); cDNA 1 559 ( 559 n); score: 0.893 MATCH C08HBa0027D09.1+ SGN-E244046- 0.893 559 1.000 C PGS_C08HBa0027D09.1+_SGN-E244046- (38123 38681) Alignment (genomic DNA sequence = upper lines): GGTGAGTTTA ATTGTTCTTA CTCTAGAGGA CAGGGTTCAG AAGGTTACTC AGTCCGACCA 38182 |||||||||| || || |||| | |||||||| |||||||| | | ||||||| |||||||||| GGTGAGTTTA ATGGTGCTTA CACTAGAGGA CAGGGTTCGG GAAGTTACTC AGTCCGACCA 60 ATTCAGTCTT CACTACAGAC TGTAGTTGGG GGTCCACCTC AGACCGGTCA ACACTTCTAT 38242 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||| | ATTCAGTCTT CACTACAGAC TGTAGTTGGG GGTCCACCTT CGACCGGTCA ACACTTCTCT 120 GAGAGACCTA TGCTTGACTC CAGGGAGTGT TATGGATGTG GGGAGACTGG ACATATTAGG 38302 ||||||| || ||| ||| | ||| ||||| ||||| |||| |||||| ||| |||||||| | GAGAGACTTA TGCATGAACC CAGAGAGTGC TATGGGTGTG GGGAGATTGG ACATATTAAG 180 AGGAATTGTC CAAAACAGAG TTATATACCC CCAATAGCTA GAGGTAGAGG TGGTCATGGT 38362 || |||||| |||||||||| ||| | ||| |||| | || |||||||||| ||||||||| AGATATTGTC CAAAACAGAG TTACAGACCT CCAAAGGTTA GAGGTAGAGG TGGTCATGGC 240 AGAGGCCGTT ATTTTGGAGA ACGCGGTGGC CGAGGTAATG GTGGTCACTA AAACGGCTGG 38422 |||| ||||| ||| ||||| ||| || || ||||| |||| |||||||| | ||||||| | AGAGTCCGTT ATTCTGGAGG ACGTGGCGGT CGAGGAAATG GTGGTCACCA AAACGGCCGA 300 GGTAACGGGC AAACTGGAGC CACTACAGCA CAACATGGTA GGGGCAACGG GCAGACAGGT 38482 ||| | |||| |||||||||| ||||||| || |||||||||| |||||||| | || | | GGTGATGGGC AAACTGGAGC CACTACATCA CAACATGGTA GGGGCAACAG ACATAAGAAT 360 GATAGGGCCC ATTGTTATGC TTTCCCTGGG AGATCTGAAG CGGAGACATC TGATGCTGTC 38542 |||||||||| ||||||| || |||||||||| | ||||||| ||||| ||| ||||| |||| GATAGGGCCC ATTGTTACGC TTTCCCTGGG CGGTCTGAAG CGGAGGAATC TGATGTTGTC 420 ATCACAGGTA ATCTTTTGGT TTGTGATTGC ATGGCTTCTG TATTTTTTGA TCATGGATCC 38602 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| || ||||||| ATCACAGGTA ATCTTTTGGT TTGTGATTGC ATGGCTTCTG TATTGTTTGA TCCTGGATCC 480 ACATTTTCTT ATGTATCTTC CTCATTTGCT AATGGTCTTA ATTTACATTG TGAACTGCTT 38662 |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||| | ||| ACATTTTCTT ATGTATCTTC CTCATTTGCT AATGGTCTAA CTTTACATTG TGAATTACTT 540 GACATGCCTA TTCGTGTTT 38681 || ||||||| ||||||||| GATATGCCTA TTCGTGTTT 559 hqPGS_C08HBa0027D09.1+_SGN-E244046- (38123 38681) ******************************************************************************** EST sequence 280 -strand 543 n (File: SGN-E355026-) 1 GCAGAGGCGT CTGATGCTGT TATCACAGGT AATCTCTTGG TTTGTGATTG CATGGCATCT 61 GTATTATTTG ACCCTGGCTC CACGTTTTCA TATGTATCTT CATCATTTGC TAATGGTCTA 121 AAATTGCATT GTGAATTACT TGACATGCCT ATTCGTGTTT CTACTCCGGT GGGTGAGTCT 181 GTGATAGTTG AAAAGGTACA TAGGTCTTGT TTGGTGAATT TCGTGGGGAG CAACACTTAT 241 CTAGATTTGG TTACTTTAGA AATGGGTGAC TTTGATGTAA TTCTGGGTAT GACTTGGCTT 301 TCTCCCAATT TTGCGATCTT GGATTGTAAT GCTAAAACGG TGACGTTAGC CAAGCCTGGG 361 ACAGATCCGT TAGTGTGGGA GGGTGACTAC ACTTCCAATC CGGTGCGTAT TATCTCCTTT 421 CTTTGTGCTC AGAAGATGGT TAGTAAGGGT TGTCTATCCT TCTTGGCACA TCTCAAGGAT 481 GACACTATCC AAGTACCCTC AATTGAATTA GTTTTGGTAG TTTGAGAATT TTTGGATGTG 541 TTC Predicted gene structure (within gDNA segment 36670 to 41177): Exon 1 38522 39046 ( 525 n); cDNA 1 542 ( 542 n); score: 0.799 MATCH C08HBa0027D09.1+ SGN-E355026- 0.799 525 0.967 C PGS_C08HBa0027D09.1+_SGN-E355026- (38522 39046) Alignment (genomic DNA sequence = upper lines): GCGGAGACAT CTGATGCTGT CATCACAGGT AATCTTTTGG TTTGTGATTG CATGGCTTCT 38581 || ||| | | |||||||||| ||||||||| ||||| |||| |||||||||| |||||| ||| GCAGAGGCGT CTGATGCTGT TATCACAGGT AATCTCTTGG TTTGTGATTG CATGGCATCT 60 GTATTTTTTG ATCATGGATC CACATTTTCT TATGTATCTT CCTCATTTGC TAATGGTCTT 38641 ||||| |||| | | ||| || ||| ||||| |||||||||| | |||||||| ||||||||| GTATTATTTG ACCCTGGCTC CACGTTTTCA TATGTATCTT CATCATTTGC TAATGGTCTA 120 AATTTACATT GTGAACTGCT TGACATGCCT ATTCGTGTTT CTACTCCGGT GGGTGAGTCT 38701 || || |||| ||||| | || |||||||||| |||||||||| |||||||||| |||||||||| AAATTGCATT GTGAATTACT TGACATGCCT ATTCGTGTTT CTACTCCGGT GGGTGAGTCT 180 GTGATAGTTG AAAAAGTATA TAGGTC-TG- --GG-G-A-- -------G-- CAATACTCAT 38744 |||||||||| |||| ||| | |||||| || || | | | ||| ||| || GTGATAGTTG AAAAGGTACA TAGGTCTTGT TTGGTGAATT TCGTGGGGAG CAACACTTAT 240 GTAGACTTGG TTATCTCAGA AATGGTTGAT TTTGATGTAA TTCTGGGTTT GACTTGGCTT 38804 |||| |||| ||| | ||| ||||| ||| |||||||||| |||||||| | |||||||||| CTAGATTTGG TTACTTTAGA AATGGGTGAC TTTGATGTAA TTCTGGGTAT GACTTGGCTT 300 TCTCTGAATT TTGCGATCTT GGATTGTAAT GCTAAAACTG TGACGTTAGC CAAGCCTGGG 38864 |||| |||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCTCCCAATT TTGCGATCTT GGATTGTAAT GCTAAAACGG TGACGTTAGC CAAGCCTGGG 360 ACAGATCCGT TAGCGTGGGA GGGCGACTAC ACTTCCACTC CGGTTCGTAT CATCTCCGTT 38924 |||||||||| ||| |||||| ||| |||||| ||||||| || |||| ||||| |||||| || ACAGATCCGT TAGTGTGGGA GGGTGACTAC ACTTCCAATC CGGTGCGTAT TATCTCCTTT 420 CTTCGTGCTA AGAGAATGGT AAGTAAGGGG TGTTTAGATT TCTTGTCACA TCTCAGGGAT 38984 ||| ||||| ||| ||||| |||||||| ||| || | ||||| |||| ||||| |||| CTTTGTGCTC AGAAGATGGT TAGTAAGGGT TGTCTATCCT TCTTGGCACA TCTCAAGGAT 480 GATACTACCC AAGTACCTTC AATTGAGTCA GTTTCGATAG TCTGTGAGTT TCTAGATGTG 39044 || |||| || ||||||| || |||||| | | |||| | ||| | || || || | | |||||| GACACTATCC AAGTACCCTC AATTGAATTA GTTTTGGTAG TTTGAGAATT TTTGGATGTG 540 TT 39046 || TT 542 hqPGS_C08HBa0027D09.1+_SGN-E355026- (38522 39046) ******************************************************************************** EST sequence 277 -strand 761 n (File: SGN-E355244-) 1 ATTAGATGCT GTCATCACAG GTAATCTTTC GATTGTGATT GCATGGCTTC TGTATTGTTG 61 ATCCTGGGAT CCACGTTTTC TANTGTATCT TCCTCATTTG CTAACGGTCT AAATTTACAT 121 TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG TGGGTGAGTC TGTGGTAGTT 181 GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA GCAACACTTA TGTAGATTTG 241 GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA TGACTTGGCT TTCTCCGCAA 301 TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG CCAAGCCTGG GACAGATCCG 361 TTAGTGTGGG AGGGTGACTA CACTTCCAAT CCGGTGTGCA TCATCTCCTT TCTTCGTGCT 421 AAGAAAATGG TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC ATCTCAAGGA TGACACTACC 481 CAAGTACCTT CGATTGAGTC GGTTTTTATA GTCTGTGAGT TTTTGGATGT GTTCCCTGCA 541 GATCTTCCTG GTATGCCACC AGATAGGGAT ATTGACTTCT GTATCGATCT TGAACCGGGC 601 ACACGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG TAGAGTTAAG AGAGTTAAAG 661 GCCCAACTTC AAGAGTTGTT GAGCAAAGGT TTCATTAGAC CAAGTGCATC TCCTTGGGGT 721 GCTCCGATTT TGTTTGTGAA GAAGAAGGAT GGGAGTTTCC G Predicted gene structure (within gDNA segment 36706 to 40963): Exon 1 38530 39274 ( 745 n); cDNA 1 761 ( 761 n); score: 0.836 MATCH C08HBa0027D09.1+ SGN-E355244- 0.836 745 0.979 C PGS_C08HBa0027D09.1+_SGN-E355244- (38530 39274) Alignment (genomic DNA sequence = upper lines): ATCTGATGCT GTCATCACAG GTAATCTTTT GGTTTGTGAT TGCATGGCTT CTGTATTTTT 38589 || |||||| |||||||||| |||||| ||| | ||||||| |||||||||| ||||| || | ATTAGATGCT GTCATCACAG GTAATC-TTT CGATTGTGAT TGCATGGCTT CTGTA-TTGT 58 TGATCAT-GG ATCCACATTT TCTTATGTAT CTTCCTCATT TGCTAATGGT CTTAATTTAC 38648 ||||| | || |||||| ||| ||| ||||| |||||||||| |||||| ||| || ||||||| TGATCCTGGG ATCCACGTTT TCTANTGTAT CTTCCTCATT TGCTAACGGT CTAAATTTAC 118 ATTGTGAACT GCTTGACATG CCTATTCGTG TTTCTACTCC GGTGGGTGAG TCTGTGATAG 38708 |||||||| | ||||| ||| |||||||||| |||||||||| |||||||||| |||||| ||| ATTGTGAATT ACTTGATATG CCTATTCGTG TTTCTACTCC GGTGGGTGAG TCTGTGGTAG 178 TTGAAAAAGT ATATAGGTC- TG---GG-G- A-------G- ---CAATACT CATGTAGACT 38751 ||||||| || ||||||||| || || | | | ||| ||| ||||||| | TTGAAAAGGT ATATAGGTCT TGTTTGGTGA ACTTTGTGGG GAGCAACACT TATGTAGATT 238 TGGTTATCTC AGAAATGGTT GATTTTGATG TAATTCTGGG TTTGACTTGG CTTTCTCTGA 38811 ||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||||||| | TGGTTATCTT AGAAATGGTT GATTTTGATG TAATTCTGGG TATGACTTGG CTTTCTCCGC 298 ATTTTGCGAT CTTGGATTGT AATGCTAAAA CTGTGACGTT AGCCAAGCCT GGGACAGATC 38871 | |||||||| |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| AATTTGCGAT CTTGGATTGT AATGCTAAAA CGGTGACATT AGCCAAGCCT GGGACAGATC 358 CGTTAGCGTG GGAGGGCGAC TACACTTCCA CTCCGGTTCG TATCATCTCC GTTCTTCGTG 38931 |||||| ||| |||||| ||| |||||||||| |||||| | ||||||||| ||||||||| CGTTAGTGTG GGAGGGTGAC TACACTTCCA ATCCGGTGTG CATCATCTCC TTTCTTCGTG 418 CTAAGAGAAT GGTAAGTAAG GGGTGTTTAG ATTTCTTGTC ACATCTCAGG GATGATACTA 38991 |||||| ||| ||| ||||| |||||||||| ||||||| | |||||||| | ||||| |||| CTAAGAAAAT GGTTAGTAAA GGGTGTTTAG CTTTCTTGGC ACATCTCAAG GATGACACTA 478 CCCAAGTACC TTCAATTGAG TCAGTTTCGA TAGTCTGTGA GTTTCTAGAT GTGTTTCCCA 39051 |||||||||| ||| |||||| || |||| | |||||||||| |||| | ||| ||||| || CCCAAGTACC TTCGATTGAG TCGGTTTTTA TAGTCTGTGA GTTTTTGGAT GTGTTCCCTG 538 CAGATCTTCC TGGTATGCCA CCGGATAGAG ATATTGACTT CTGCATCGAT CTTGAACCGG 39111 |||||||||| |||||||||| || ||||| | |||||||||| ||| |||||| |||||||||| CAGATCTTCC TGGTATGCCA CCAGATAGGG ATATTGACTT CTGTATCGAT CTTGAACCGG 598 GTACTCGCCC CGTTTCTATA CCCCCTTATA GAATGGCTCC CGCGGAGTTG AGCGAGTTAA 39171 | || ||||| | |||||||| |||||||||| |||||||||| || ||||| || ||||||| GCACACGCCC CATTTCTATA CCCCCTTATA GAATGGCTCC CGTAGAGTTA AGAGAGTTAA 658 AGGCTCAACT TCAAGAATTG TTAGGAAATG GCTTCATTAG ACAAAGTGCA TATCCTTGGG 39231 |||| ||||| |||||| ||| || | || | | |||||||| || ||||||| | |||||||| AGGCCCAACT TCAAGAGTTG TTGAGCAAAG GTTTCATTAG ACCAAGTGCA TCTCCTTGGG 718 GTGCTCTTGT TTTGTTTGTG AAGAAGAACG ATGGAAGCTT TCG 39274 |||||| | |||||||||| |||||||| | |||| || || || GTGCTCCGAT TTTGTTTGTG AAGAAGAAGG ATGGGAGTTT CCG 761 hqPGS_C08HBa0027D09.1+_SGN-E355244- (38530 39274) ******************************************************************************** EST sequence 229 -strand 331 n (File: SGN-E352716-) 1 TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 61 TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 121 GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 181 ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 241 GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 301 ACTGTGACGT TAGCCAAGCC TGGGACAGAT C Predicted gene structure (within gDNA segment 37048 to 39471): Exon 1 38558 38871 ( 314 n); cDNA 1 331 ( 331 n); score: 0.807 MATCH C08HBa0027D09.1+ SGN-E352716- 0.807 314 0.949 C PGS_C08HBa0027D09.1+_SGN-E352716- (38558 38871) Alignment (genomic DNA sequence = upper lines): TTGGTTTGTG ATTGCATGGC TTCTGTATTT TTTGATCATG GATCCACATT TTCTTATGTA 38617 || |||||| |||||||||| || |||||| ||||| | || |||||||||| ||| |||||| TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 60 TCTTCCTCAT TTGCTAATGG TCTTAATTTA CATTGTGAAC TGCTTGACAT GCCTATTCGT 38677 |||||||||| |||||| ||| |||||| ||| ||| |||| |||||||||| |||||||||| TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 120 GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC T-G---GG-G 38732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | | || | GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 180 A-----G--- ----CAATAC TCATGTAGAC TTGGTTATCT CAGAAATGGT TGATTTTGAT 38780 | | |||||| | |||||||| |||||||||| ||||||||| |||||||||| ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 240 GTAATTCTGG GTTTGACTTG GCTTTCTCTG AATTTTGCGA TCTTGGATTG TAATGCTAAA 38840 |||||||||| || ||||||| |||||||| |||||||| | |||||||||| |||||||||| GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 300 ACTGTGACGT TAGCCAAGCC TGGGACAGAT C 38871 |||||||||| |||||||||| |||||||||| | ACTGTGACGT TAGCCAAGCC TGGGACAGAT C 331 hqPGS_C08HBa0027D09.1+_SGN-E352716- (38558 38871) ******************************************************************************** EST sequence 73 +strand 659 n (File: SGN-E352117+) 1 TTTGATCCTG CCTCCACATT TTCATATGTA TCTTCCTCAT TTGCTACTGT TCTTAATTTA 61 CATAGTGAAT CGCTTGACAT ACCTATTCGT GTTCTACTCC GGTGGGTGAG TCTGTGATTG 121 TTGAAAAGGT GTATAGGTCT TGTCTTGTGA CATTTGTGGG AGCAATACTC ATGTAGACTT 181 GGTTATCCTA TAAATGGTTG ACTTCGATGT AATTCTGGGT ATGACTTGGC TGTCTCCAAA 241 TTTTGCAATC TTGGATTGTA ATGCTAAAAC TGTAACGTTG GCCAAGCCTG AGATAGATGC 301 GTTAGTGTGG GAGGGTGACT ACACTTCCAC TCCAGTTCGT ATCATCTCCT TTCTTTGTGC 361 TAAGAGAATG GTTAGTAAAG GGTGTTTAGC TTTCTTGGCA CACCTCAGGG ATGATACTAC 421 CCAAGTACCT TCAATTGAGT CAGTTTCGAT AGTCCGTGAG TTTCTGGATG TGTTTCCTGC 481 AGACCTTCCT GGTATGCCAC CGGATAGGGA TATTGACTTT TGCATTGATC TGGAGCCGGG 541 TGATCACCCC ATTTCCATAC CCCCTTATAG AATGGCTCCC GCTGAGTTGG GGGAGTTAAA 601 GGCCCAACTT CAAGAGTTGT TANGTAAGGG CTTCATTANG CCAAGTGCAT CCCCTTGGG Predicted gene structure (within gDNA segment 36560 to 41686): Exon 1 38588 39231 ( 644 n); cDNA 1 659 ( 659 n); score: 0.834 MATCH C08HBa0027D09.1+ SGN-E352117+ 0.834 644 0.977 C PGS_C08HBa0027D09.1+_SGN-E352117+ (38588 39231) Alignment (genomic DNA sequence = upper lines): TTTGATCATG GATCCACATT TTCTTATGTA TCTTCCTCAT TTGCTAATGG TCTTAATTTA 38647 ||||||| || |||||||| ||| |||||| |||||||||| |||||| || |||||||||| TTTGATCCTG CCTCCACATT TTCATATGTA TCTTCCTCAT TTGCTACTGT TCTTAATTTA 60 CATTGTGAAC TGCTTGACAT GCCTATTCGT GTTTCTACTC CGGTGGGTGA GTCTGTGATA 38707 ||| ||||| ||||||||| ||||||||| | |||||||| |||||||||| ||||||||| CATAGTGAAT CGCTTGACAT ACCTATTCGT G-TTCTACTC CGGTGGGTGA GTCTGTGATT 119 GTTGAAAAAG TATATAGGTC -TG----G-G ---------- GAGCAATACT CATGTAGACT 38751 |||||||| | | |||||||| || | | |||||||||| |||||||||| GTTGAAAAGG TGTATAGGTC TTGTCTTGTG ACATTTGTGG GAGCAATACT CATGTAGACT 179 TGGTTATCTC AGAAATGGTT GATTTTGATG TAATTCTGGG TTTGACTTGG CTTTCTCTGA 38811 |||||||| | |||||||| || || |||| |||||||||| | |||||||| || |||| | TGGTTATCCT ATAAATGGTT GACTTCGATG TAATTCTGGG TATGACTTGG CTGTCTCCAA 239 ATTTTGCGAT CTTGGATTGT AATGCTAAAA CTGTGACGTT AGCCAAGCCT GGGACAGATC 38871 ||||||| || |||||||||| |||||||||| |||| ||||| ||||||||| | || |||| ATTTTGCAAT CTTGGATTGT AATGCTAAAA CTGTAACGTT GGCCAAGCCT GAGATAGATG 299 CGTTAGCGTG GGAGGGCGAC TACACTTCCA CTCCGGTTCG TATCATCTCC GTTCTTCGTG 38931 |||||| ||| |||||| ||| |||||||||| |||| ||||| |||||||||| ||||| ||| CGTTAGTGTG GGAGGGTGAC TACACTTCCA CTCCAGTTCG TATCATCTCC TTTCTTTGTG 359 CTAAGAGAAT GGTAAGTAAG GGGTGTTTAG ATTTCTTGTC ACATCTCAGG GATGATACTA 38991 |||||||||| ||| ||||| |||||||||| ||||||| | ||| |||||| |||||||||| CTAAGAGAAT GGTTAGTAAA GGGTGTTTAG CTTTCTTGGC ACACCTCAGG GATGATACTA 419 CCCAAGTACC TTCAATTGAG TCAGTTTCGA TAGTCTGTGA GTTTCTAGAT GTGTTTCCCA 39051 |||||||||| |||||||||| |||||||||| ||||| |||| |||||| ||| |||||||| CCCAAGTACC TTCAATTGAG TCAGTTTCGA TAGTCCGTGA GTTTCTGGAT GTGTTTCCTG 479 CAGATCTTCC TGGTATGCCA CCGGATAGAG ATATTGACTT CTGCATCGAT CTTGAACCGG 39111 |||| ||||| |||||||||| |||||||| | |||||||||| ||||| ||| || || |||| CAGACCTTCC TGGTATGCCA CCGGATAGGG ATATTGACTT TTGCATTGAT CTGGAGCCGG 539 GTACTCGCCC CGTTTCTATA CCCCCTTATA GAATGGCTCC CGCGGAGTTG AGCGAGTTAA 39171 || || ||| | |||| ||| |||||||||| |||||||||| ||| |||||| | ||||||| GTGATCACCC CATTTCCATA CCCCCTTATA GAATGGCTCC CGCTGAGTTG GGGGAGTTAA 599 AGGCTCAACT TCAAGAATTG TTAGGAAATG GCTTCATTAG ACAAAGTGCA TATCCTTGGG 39231 |||| ||||| |||||| ||| ||| | || | ||||||||| | ||||||| | ||||||| AGGCCCAACT TCAAGAGTTG TTANGTAAGG GCTTCATTAN GCCAAGTGCA TCCCCTTGGG 659 hqPGS_C08HBa0027D09.1+_SGN-E352117+ (38588 39231) ******************************************************************************** EST sequence 273 -strand 658 n (File: SGN-E355232-) 1 GTGGTAGTTG AAAAGGTACA TAGTTCTGTT TTGTNGAATT TCGTGGGGAG CAACACTTAT 61 GTAGATTTGG TTTTTTAGAA ATGGGTGACA TTGATGTAAT TCTGGGTATG ACTTGGCTTT 121 CTCCAAATTT TGCGATCTTG GATTGTAATG CTAAAACGGT GACGTTAGCC AAGCCTGGGA 181 CAGATCCGTT AGTGTGGGAG GGTGACTACA CTTCCAATCT GGTGCGTATC ATATCCTTTC 241 TTCGTGCTAA GAAAATGGTT AGTAAAGGGT GTTCAGCTTT CTTGGCACAT CTCAAGGATG 301 ACACTACTCA AGTACCCTCA ATTGAGTCGG TTTCGGTAGT CCGCGAGTTT TTGGACGTGT 361 TTCCTGCAGA TCTTCCTGGT ATGCCACCAG ATAGGGATAT TGACTTCTGT ATCGATCTTG 421 AACCAGGCAC ACGCCCCATT TCTATACCCC CTTATAGAAT GGCTCCCGCC GAATTAAGAG 481 AGTTAAAGGC TCAACTTCAA GAGTTGTTGA GCAAGGTCTT CATTAGACCA AGTGCATCTC 541 CTTGGGGTGC TCCAGTTTTA TTTGTGAAGA AGAAGGATGG AAGTTTTAGA ATGTGCATAG 601 ACTACAGACA ACTGAACAAG GTAACTATTA AGAACAAGTA TCCTCTTCCT CGCATTGA Predicted gene structure (within gDNA segment 37266 to 41347): Exon 1 38728 39343 ( 616 n); cDNA 44 658 ( 615 n); score: 0.880 MATCH C08HBa0027D09.1+ SGN-E355232- 0.880 616 0.936 C PGS_C08HBa0027D09.1+_SGN-E355232- (38728 39343) Alignment (genomic DNA sequence = upper lines): TGGGGAGCAA TACTCATGTA GACTTGGTTA TCTCAGAAAT GGTTGATTTT GATGTAATTC 38787 |||||||||| ||| ||||| || |||||| | | |||||| || ||| || |||||||||| TGGGGAGCAA CACTTATGTA GATTTGGTT- TTTTAGAAAT GGGTGACATT GATGTAATTC 102 TGGGTTTGAC TTGGCTTTCT CTGAATTTTG CGATCTTGGA TTGTAATGCT AAAACTGTGA 38847 ||||| |||| |||||||||| | ||||||| |||||||||| |||||||||| ||||| |||| TGGGTATGAC TTGGCTTTCT CCAAATTTTG CGATCTTGGA TTGTAATGCT AAAACGGTGA 162 CGTTAGCCAA GCCTGGGACA GATCCGTTAG CGTGGGAGGG CGACTACACT TCCACTCCGG 38907 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||| || || CGTTAGCCAA GCCTGGGACA GATCCGTTAG TGTGGGAGGG TGACTACACT TCCAATCTGG 222 TTCGTATCAT CTCCGTTCTT CGTGCTAAGA GAATGGTAAG TAAGGGGTGT TTAGATTTCT 38967 | |||||||| ||| ||||| |||||||||| |||||| || ||| |||||| | || ||||| TGCGTATCAT ATCCTTTCTT CGTGCTAAGA AAATGGTTAG TAAAGGGTGT TCAGCTTTCT 282 TGTCACATCT CAGGGATGAT ACTACCCAAG TACCTTCAAT TGAGTCAGTT TCGATAGTCT 39027 || ||||||| || |||||| ||||| |||| |||| ||||| |||||| ||| ||| ||||| TGGCACATCT CAAGGATGAC ACTACTCAAG TACCCTCAAT TGAGTCGGTT TCGGTAGTCC 342 GTGAGTTTCT AGATGTGTTT CCCACAGATC TTCCTGGTAT GCCACCGGAT AGAGATATTG 39087 | |||||| | || |||||| || |||||| |||||||||| |||||| ||| || ||||||| GCGAGTTTTT GGACGTGTTT CCTGCAGATC TTCCTGGTAT GCCACCAGAT AGGGATATTG 402 ACTTCTGCAT CGATCTTGAA CCGGGTACTC GCCCCGTTTC TATACCCCCT TATAGAATGG 39147 ||||||| || |||||||||| || || || | ||||| |||| |||||||||| |||||||||| ACTTCTGTAT CGATCTTGAA CCAGGCACAC GCCCCATTTC TATACCCCCT TATAGAATGG 462 CTCCCGCGGA GTTGAGCGAG TTAAAGGCTC AACTTCAAGA ATTGTTAGGA AATGGCTTCA 39207 ||||||| || || || ||| |||||||||| |||||||||| ||||| | || | ||||| CTCCCGCCGA ATTAAGAGAG TTAAAGGCTC AACTTCAAGA GTTGTTGAGC AAGGTCTTCA 522 TTAGACAAAG TGCATATCCT TGGGGTGCTC TTGTTTTGTT TGTGAAGAAG AACGATGGAA 39267 |||||| ||| ||||| |||| |||||||||| ||||| || |||||||||| || ||||||| TTAGACCAAG TGCATCTCCT TGGGGTGCTC CAGTTTTATT TGTGAAGAAG AAGGATGGAA 582 GCTTTCGGAT GTCCATAGAC TACAAATAAC TAAATAAGGT AACGGTTAAG AACAAGTATC 39327 | ||| | || || ||||||| |||| | ||| | || ||||| ||| ||||| |||||||||| GTTTTAGAAT GTGCATAGAC TACAGACAAC TGAACAAGGT AACTATTAAG AACAAGTATC 642 CTCTTCCTCG TATCGA 39343 |||||||||| || || CTCTTCCTCG CATTGA 658 hqPGS_C08HBa0027D09.1+_SGN-E355232- (38728 39343) ******************************************************************************** EST sequence 238 -strand 661 n (File: SGN-E351414-) 1 CTAACGGTCT AAATTTACAT TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG 61 TGGGTGAGTC TGTGGTAGTT GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA 121 GCAACACTTA TGTAGATTTG GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA 181 TGACTTGGCT TTCTCCGCAA TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG 241 CCAAGCCTGG GACAGATCCG TTAGTGTGGG AGGGTGACTA CACTTCCAAT CCGGTGTGCA 301 TCATCTCCTT TCTTCGTGCT AAGAAAATGG TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC 361 ATCTCAAGGA TGACACTACC CAAGTACCTT CGATTGAGTC GGTTTTTATA GTCTGTGAGT 421 TTTTGGATGT GTTCCCTGCA GATCTTCCTG GTATGCCACC AGATAGGGAT ATTGACTTCT 481 GTATCGATCT TGAACCGGGC ACACGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG 541 TAGAGTTAAG AGAGTTAAAG GCCCAACTTC AAGAGTTGTT GAGCAAAGGT TTCATTAGAC 601 CAAGTGCATC TCCTTGGGGT GCTCCGATTT TGTTTGTGAA GAAGAAGGAT GGGAGTTTCC 661 G Predicted gene structure (within gDNA segment 37706 to 40963): Exon 1 38728 39274 ( 547 n); cDNA 115 661 ( 547 n); score: 0.892 MATCH C08HBa0027D09.1+ SGN-E351414- 0.892 547 0.828 C PGS_C08HBa0027D09.1+_SGN-E351414- (38728 39274) Alignment (genomic DNA sequence = upper lines): TGGGGAGCAA TACTCATGTA GACTTGGTTA TCTCAGAAAT GGTTGATTTT GATGTAATTC 38787 |||||||||| ||| ||||| || ||||||| ||| |||||| |||||||||| |||||||||| TGGGGAGCAA CACTTATGTA GATTTGGTTA TCTTAGAAAT GGTTGATTTT GATGTAATTC 174 TGGGTTTGAC TTGGCTTTCT CTGAATTTTG CGATCTTGGA TTGTAATGCT AAAACTGTGA 38847 ||||| |||| |||||||||| | | | |||| |||||||||| |||||||||| ||||| |||| TGGGTATGAC TTGGCTTTCT CCGCAATTTG CGATCTTGGA TTGTAATGCT AAAACGGTGA 234 CGTTAGCCAA GCCTGGGACA GATCCGTTAG CGTGGGAGGG CGACTACACT TCCACTCCGG 38907 | |||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||| ||||| CATTAGCCAA GCCTGGGACA GATCCGTTAG TGTGGGAGGG TGACTACACT TCCAATCCGG 294 TTCGTATCAT CTCCGTTCTT CGTGCTAAGA GAATGGTAAG TAAGGGGTGT TTAGATTTCT 38967 | | ||||| |||| ||||| |||||||||| |||||| || ||| |||||| |||| ||||| TGTGCATCAT CTCCTTTCTT CGTGCTAAGA AAATGGTTAG TAAAGGGTGT TTAGCTTTCT 354 TGTCACATCT CAGGGATGAT ACTACCCAAG TACCTTCAAT TGAGTCAGTT TCGATAGTCT 39027 || ||||||| || |||||| |||||||||| ||||||| || |||||| ||| | ||||||| TGGCACATCT CAAGGATGAC ACTACCCAAG TACCTTCGAT TGAGTCGGTT TTTATAGTCT 414 GTGAGTTTCT AGATGTGTTT CCCACAGATC TTCCTGGTAT GCCACCGGAT AGAGATATTG 39087 |||||||| | |||||||| || |||||| |||||||||| |||||| ||| || ||||||| GTGAGTTTTT GGATGTGTTC CCTGCAGATC TTCCTGGTAT GCCACCAGAT AGGGATATTG 474 ACTTCTGCAT CGATCTTGAA CCGGGTACTC GCCCCGTTTC TATACCCCCT TATAGAATGG 39147 ||||||| || |||||||||| ||||| || | ||||| |||| |||||||||| |||||||||| ACTTCTGTAT CGATCTTGAA CCGGGCACAC GCCCCATTTC TATACCCCCT TATAGAATGG 534 CTCCCGCGGA GTTGAGCGAG TTAAAGGCTC AACTTCAAGA ATTGTTAGGA AATGGCTTCA 39207 |||||| || ||| || ||| |||||||| | |||||||||| ||||| | || || |||| CTCCCGTAGA GTTAAGAGAG TTAAAGGCCC AACTTCAAGA GTTGTTGAGC AAAGGTTTCA 594 TTAGACAAAG TGCATATCCT TGGGGTGCTC TTGTTTTGTT TGTGAAGAAG AACGATGGAA 39267 |||||| ||| ||||| |||| |||||||||| ||||||| |||||||||| || ||||| | TTAGACCAAG TGCATCTCCT TGGGGTGCTC CGATTTTGTT TGTGAAGAAG AAGGATGGGA 654 GCTTTCG 39274 | || || GTTTCCG 661 hqPGS_C08HBa0027D09.1+_SGN-E351414- (38728 39274) ******************************************************************************** EST sequence 192 -strand 560 n (File: SGN-E242765-) 1 TTTCTTGATA TGCCTATTCG TGTTTCTACT CCGGTGGGTG AGTCTGAGGT AGTTGAAAAA 61 GTATATAGGT CTTGTGTCGT AAACTTTGTG GGGAGCAACA CTTATGTAGA TTTGGTTATC 121 TTGGCAATGG ATGATTTTGA TGTGATTCTG GGTATGACTT TGCTTTCTCC GCAATTTGCA 181 ATCTTGGATT GTAATGCTAA AACGGTGACG TTAGCCAAGC CTGGGATAGA CCCGTTAGTG 241 TGAGAGGGTG ACTACACTTC CAATCCGGTC CGCATCGTCT CCTTTCTTCT TGCTAAGAAA 301 ATGATTAGTA AAAGGTGTTT ATCTTTCTTA GCACATCTCA ATGATGACAC TACCCAAGTA 361 CCTTCGATTG AGTCGGTTTC AATAGCAAAT AAGCCTAAGT AAATATTACC AACACTTACT 421 CACCTTTTAT AGTGTAAAGC TAATGAAGAG ATAAGTCTCT ATGAACACTT TAATGAAATT 481 ATTAAATTGA GGGAATACTA AATACTAATT ATGAGATGAG AAATAATCAA ATGAGCTATG 541 ATGTCCTAAT GCTAGAACCA Predicted gene structure (within gDNA segment 37966 to 43405): Exon 1 38728 39023 ( 296 n); cDNA 89 384 ( 296 n); score: 0.861 MATCH C08HBa0027D09.1+ SGN-E242765- 0.861 296 0.529 C PGS_C08HBa0027D09.1+_SGN-E242765- (38728 39023) Alignment (genomic DNA sequence = upper lines): TGGGGAGCAA TACTCATGTA GACTTGGTTA TCTCAGAAAT GGTTGATTTT GATGTAATTC 38787 |||||||||| ||| ||||| || ||||||| ||| | ||| || ||||||| ||||| |||| TGGGGAGCAA CACTTATGTA GATTTGGTTA TCTTGGCAAT GGATGATTTT GATGTGATTC 148 TGGGTTTGAC TTGGCTTTCT CTGAATTTTG CGATCTTGGA TTGTAATGCT AAAACTGTGA 38847 ||||| |||| || ||||||| | | | |||| | |||||||| |||||||||| ||||| |||| TGGGTATGAC TTTGCTTTCT CCGCAATTTG CAATCTTGGA TTGTAATGCT AAAACGGTGA 208 CGTTAGCCAA GCCTGGGACA GATCCGTTAG CGTGGGAGGG CGACTACACT TCCACTCCGG 38907 |||||||||| |||||||| | || ||||||| ||| ||||| ||||||||| |||| ||||| CGTTAGCCAA GCCTGGGATA GACCCGTTAG TGTGAGAGGG TGACTACACT TCCAATCCGG 268 TTCGTATCAT CTCCGTTCTT CGTGCTAAGA GAATGGTAAG TAAGGGGTGT TTAGATTTCT 38967 | || ||| | |||| ||||| | |||||||| |||| | || ||| ||||| ||| ||||| TCCGCATCGT CTCCTTTCTT CTTGCTAAGA AAATGATTAG TAAAAGGTGT TTATCTTTCT 328 TGTCACATCT CAGGGATGAT ACTACCCAAG TACCTTCAAT TGAGTCAGTT TCGATA 39023 | ||||||| || ||||| |||||||||| ||||||| || |||||| ||| || ||| TAGCACATCT CAATGATGAC ACTACCCAAG TACCTTCGAT TGAGTCGGTT TCAATA 384 hqPGS_C08HBa0027D09.1+_SGN-E242765- (38728 39023) ******************************************************************************** EST sequence 286 -strand 679 n (File: SGN-E368762-) 1 CACTCGCCCC ATTTCTATAC CCCCTTATAG AATGGCTCCC GCGGAGTTAA GAGAGTTAAA 61 GGCCCAACTT CAAGAGTTTT TGAGCAAAGT CTTCATTAGA CCAAGTGCAT CTCCTTGGGG 121 TGCTCCGGTT TGGTTTGTGA AGAAGAAGGA TGGGAGTTTT CGGATGTGCA TAGACTACCG 181 GCAGTTGAAC AAGGTAACTA TTAAGAACAA GTATCCACTT CCTCGCATTG ATGACTTGTT 241 CGATCAGTTA CAAGGTGCTT GTGTCTTCTC TAAGATTGAC TTGAGATCCG GTTATCATCA 301 ATTGAAAATA CGGGCAACGG ATGTGCCAAA GACTGCTTTT AGAACCAGGT ATGGGCATTA 361 CGAATTTGTA GTGATGTCTT TTGGTCTTAC GAATGCCCCT GCTGCGTTCA TGAGCTTGAT 421 GAACGGGATT TTAAGCCATA TTTGGATCTC TTTGTCATCA TGTTTATTGA TGATATACTG 481 ATATACTCTA ATAGTAAGAA GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG 541 AGGGAGAAAA AGCTTTATGC CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC 601 TTCTTGGGGC ACGTGGTTTC TAAGGATGGA GTGATGGTGG ATCCTTGTAA GATTGAGACA 661 GTGAAGAATT GGGTGAGAC Predicted gene structure (within gDNA segment 38404 to 42695): Exon 1 39114 39792 ( 679 n); cDNA 2 679 ( 678 n); score: 0.879 MATCH C08HBa0027D09.1+ SGN-E368762- 0.879 679 1.000 C PGS_C08HBa0027D09.1+_SGN-E368762- (39114 39792) Alignment (genomic DNA sequence = upper lines): ACTCGCCCCG TTTCTATACC CCCTTATAGA ATGGCTCCCG CGGAGTTGAG CGAGTTAAAG 39173 ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||||||| ACTCGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG CGGAGTTAAG AGAGTTAAAG 61 GCTCAACTTC AAGAATTGTT AGGAAATGGC TTCATTAGAC AAAGTGCATA TCCTTGGGGT 39233 || ||||||| |||| || || | || | | |||||||||| |||||||| |||||||||| GCCCAACTTC AAGAGTTTTT GAGCAAAGTC TTCATTAGAC CAAGTGCATC TCCTTGGGGT 121 GCTCTTGTTT TGTTTGTGAA GAAGAACGAT GGAAGCTTTC GGATGTCCAT AGACTACAAA 39293 |||| |||| ||||||||| |||||| ||| || || |||| |||||| ||| ||||||| GCTCCGGTTT GGTTTGTGAA GAAGAAGGAT GGGAGTTTTC GGATGTGCAT AGACTACCGG 181 TAACTAAATA AGGTAACGGT TAAGAACAAG TATCCTCTTC CTCGTATCGA TGATTTGTTC 39353 | | || | ||||||| | |||||||||| ||||| |||| |||| || || ||| |||||| CAGTTGAACA AGGTAACTAT TAAGAACAAG TATCCACTTC CTCGCATTGA TGACTTGTTC 241 GATCAGTTAC AAGGTGCTTA TACTTTCTCA AAAATTGACT TGAGATCTGG TTACCATCAA 39413 |||||||||| ||||||||| | ||||| || ||||||| ||||||| || ||| |||||| GATCAGTTAC AAGGTGCTTG TGTCTTCTCT AAGATTGACT TGAGATCCGG TTATCATCAA 301 TTGAAAATAC GGGCAACGTA TGTGCCCAAG ACTGCTTTTC GGACCAGGTA TAGGCATTAT 39473 |||||||||| |||||||| | |||||| ||| ||||||||| | |||||||| | ||||||| TTGAAAATAC GGGCAACGGA TGTGCCAAAG ACTGCTTTTA GAACCAGGTA TGGGCATTAC 361 GAGTTCTTAG TAATGTCTTT TGGGCTTACG AATGCCCCTG CTGCTTTCAT GAGCTTGATG 39533 || || ||| | |||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| GAATTTGTAG TGATGTCTTT TGGTCTTACG AATGCCCCTG CTGCGTTCAT GAGCTTGATG 421 AATGGGATTT TTAAGCCATA TCTGGATCTC TTTGTCATCC TATTCATCGA TGATATATTG 39593 || |||| || |||||||||| | |||||||| ||||||||| | || || || ||||||| || AACGGGA-TT TTAAGCCATA TTTGGATCTC TTTGTCATCA TGTTTATTGA TGATATACTG 480 GTATACTCAA AGAGCAAGAA GGAACATGAG GAGCACTTGA GAATTGTATT GGAAACGTTG 39653 ||||||| | | || ||||| |||||||||| ||||| |||| |||||||||| |||| |||| ATATACTCTA ATAGTAAGAA GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG 540 AGGGAGAAAA AGCTTTATGC CAAATTCTCC AAGTGTGAGT TTTGGCTAGA TTCAGTGTCT 39713 |||||||||| |||||||||| ||| ||||| |||||||||| ||||| |||| | ||||||| AGGGAGAAAA AGCTTTATGC CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC 600 TTCTTGGGAC ACGTGGTTTC TAAGGATGGA GTGATAGTGG ATCCATCTAA GATTGAAATA 39773 |||||||| | |||||||||| |||||||||| ||||| |||| |||| | ||| |||||| | | TTCTTGGGGC ACGTGGTTTC TAAGGATGGA GTGATGGTGG ATCCTTGTAA GATTGAGACA 660 GTGAGGAATT GGGTAAGAC 39792 |||| ||||| |||| |||| GTGAAGAATT GGGTGAGAC 679 hqPGS_C08HBa0027D09.1+_SGN-E368762- (39114 39792) ******************************************************************************** EST sequence 194 -strand 712 n (File: SGN-E379315-) 1 CCGCAGAGTT AAGAGAGTTA AAAGACCACT TCAAAGAGTT GTGAGCAAAG GCTTCATTAG 61 ACCAACTGCA TCTCCTTGGG GTGCTCCGGT TTTGTTTGTA AAGAAGAAGG ATTGGAGTTT 121 TCGGATGTGC ATAGGCTACC GGCAGTGNAA CAAGGTAACC ATAAAGAACA AGTATCCTCT 181 TCCTCGCATT AATGACTTGT TCGATCAGTT ACAAGGTGCT TGTGTCTTTT CTAAGATTGA 241 CTTGAGATCC GGTTATCATC AATTGAAAAT ACGGGCAACG GATGTGCCAA AGACTGCTTT 301 TAGAACCAGG TATGGGCATT ACAAATTTGT AGTGATGTCT TTTGGTCTTA TGAATGCCCC 361 TGCTGCGTTT ATGAGTTTAA TAAAAGGGAT TTTTAAGCCA TATTTGGATC TCTTTGTGAT 421 CGTATTTATT GATGATATAC TGATATACTC TAAAAGTAAG GAGGAACATG AAGAGCATTT 481 GAGAATGGTA TTGGAAATGT TGAGGGAGAA AAAGTTTTAT GCCAAGTTCT CTAAGTGTGA 541 GTTTTGGCTA GATGTAGTGT CCTTCTTGGG GAACGTGGTT TCTAAGGATG GAGTGATGGT 601 GGATCCTTCT AAGATTGAGA CAGTGAAGAA TTGGGTAAGA CCTACTAATG TGTCAGAAAT 661 AAGGAGCTTT GTTGGGTTAG CTAGCTACTA CCGCCGATTT GTCAAGGGAT TC Predicted gene structure (within gDNA segment 37075 to 40499): Exon 1 39151 39863 ( 713 n); cDNA 1 712 ( 712 n); score: 0.856 MATCH C08HBa0027D09.1+ SGN-E379315- 0.856 713 1.001 C PGS_C08HBa0027D09.1+_SGN-E379315- (39151 39863) Alignment (genomic DNA sequence = upper lines): CCGCGGAGTT GAGCGAGTTA AAGGCTCAAC TTCAAGAATT GTTAGGAAAT GGCTTCATTA 39210 |||| ||||| || |||||| || | || | |||| || || || ||| |||||||||| CCGCAGAGTT AAGAGAGTTA AAAGACCACT TCAAAGAGTT GTGAGCAAA- GGCTTCATTA 59 GACAAAGTGC ATATCCTTGG GGTGCTCTTG TTTTGTTTGT GAAGAAGAAC GATGGAAGCT 39270 ||| || ||| || ||||||| ||||||| | |||||||||| |||||||| ||| | || | GACCAACTGC ATCTCCTTGG GGTGCTCCGG TTTTGTTTGT AAAGAAGAAG GATTGGAGTT 119 TTCGGATGTC CATAGACTAC AAATAACTAA ATAAGGTAAC GGTTAAGAAC AAGTATCCTC 39330 ||||||||| ||||| |||| | | | |||||||| | |||||| |||||||||| TTCGGATGTG CATAGGCTAC CGGCAGTGNA ACAAGGTAAC CATAAAGAAC AAGTATCCTC 179 TTCCTCGTAT CGATGATTTG TTCGATCAGT TACAAGGTGC TTATACTTTC TCAAAAATTG 39390 ||||||| || |||| ||| |||||||||| |||||||||| || | || || || |||| TTCCTCGCAT TAATGACTTG TTCGATCAGT TACAAGGTGC TTGTGTCTTT TCTAAGATTG 239 ACTTGAGATC TGGTTACCAT CAATTGAAAA TACGGGCAAC GTATGTGCCC AAGACTGCTT 39450 |||||||||| ||||| ||| |||||||||| |||||||||| | ||||||| |||||||||| ACTTGAGATC CGGTTATCAT CAATTGAAAA TACGGGCAAC GGATGTGCCA AAGACTGCTT 299 TTCGGACCAG GTATAGGCAT TATGAGTTCT TAGTAATGTC TTTTGGGCTT ACGAATGCCC 39510 || | ||||| |||| ||||| || | || |||| ||||| |||||| ||| | |||||||| TTAGAACCAG GTATGGGCAT TACAAATTTG TAGTGATGTC TTTTGGTCTT ATGAATGCCC 359 CTGCTGCTTT CATGAGCTTG ATGAATGGGA TTTTTAAGCC ATATCTGGAT CTCTTTGTCA 39570 ||||||| || ||||| || || || |||| |||||||||| |||| ||||| |||||||| | CTGCTGCGTT TATGAGTTTA ATAAAAGGGA TTTTTAAGCC ATATTTGGAT CTCTTTGTGA 419 TCCTATTCAT CGATGATATA TTGGTATACT CAAAGAGCAA GAAGGAACAT GAGGAGCACT 39630 || |||| || ||||||||| || |||||| | || || || | |||||||| || ||||| | TCGTATTTAT TGATGATATA CTGATATACT CTAAAAGTAA GGAGGAACAT GAAGAGCATT 479 TGAGAATTGT ATTGGAAACG TTGAGGGAGA AAAAGCTTTA TGCCAAATTC TCCAAGTGTG 39690 ||||||| || |||||||| | |||||||||| ||||| |||| |||||| ||| || ||||||| TGAGAATGGT ATTGGAAATG TTGAGGGAGA AAAAGTTTTA TGCCAAGTTC TCTAAGTGTG 539 AGTTTTGGCT AGATTCAGTG TCTTTCTTGG GACACGTGGT TTCTAAGGAT GGAGTGATAG 39750 |||||||||| |||| |||| || ||||||| | ||||||| |||||||||| |||||||| | AGTTTTGGCT AGATGTAGTG TCCTTCTTGG GGAACGTGGT TTCTAAGGAT GGAGTGATGG 599 TGGATCCATC TAAGATTGAA ATAGTGAGGA ATTGGGTAAG ACCTACTAAT GTGTCAGAAG 39810 ||||||| || ||||||||| | ||||| || |||||||||| |||||||||| ||||||||| TGGATCCTTC TAAGATTGAG ACAGTGAAGA ATTGGGTAAG ACCTACTAAT GTGTCAGAAA 659 TAAGGAGATT CGTTGGTTTA GCTAGCTACT ACCGCCGATT TGTCAAGGGG TTC 39863 ||||||| || ||||| ||| |||||||||| |||||||||| ||||||||| ||| TAAGGAGCTT TGTTGGGTTA GCTAGCTACT ACCGCCGATT TGTCAAGGGA TTC 712 hqPGS_C08HBa0027D09.1+_SGN-E379315- (39151 39863) ******************************************************************************** EST sequence 224 -strand 596 n (File: SGN-E375319-) 1 GTTTTCGGAT GTGCATAGGC TACCGGCAGT TGAACAAGGT AACCATAAAG AACAAGTATC 61 CTCTTCCTCG CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA 121 TTGACTTGAG ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG 181 CTTTTAGAAC CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG 241 CCCCTGCTGC GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG 301 TGATCGTATT TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC 361 ATTTGAGAAT GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT 421 GTGAGTTTTG GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA 481 TGGTGGATCC TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG 541 AAATAAGGAG CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATTC Predicted gene structure (within gDNA segment 38235 to 40499): Exon 1 39270 39863 ( 594 n); cDNA 3 596 ( 594 n); score: 0.869 MATCH C08HBa0027D09.1+ SGN-E375319- 0.869 594 0.997 C PGS_C08HBa0027D09.1+_SGN-E375319- (39270 39863) Alignment (genomic DNA sequence = upper lines): TTTCGGATGT CCATAGACTA CAAATAACTA AATAAGGTAA CGGTTAAGAA CAAGTATCCT 39329 |||||||||| ||||| ||| | | | || ||||||| | | ||||| |||||||||| TTTCGGATGT GCATAGGCTA CCGGCAGTTG AACAAGGTAA CCATAAAGAA CAAGTATCCT 62 CTTCCTCGTA TCGATGATTT GTTCGATCAG TTACAAGGTG CTTATACTTT CTCAAAAATT 39389 |||||||| | | |||| || |||||||||| |||||||||| ||| | || || || ||| CTTCCTCGCA TTAATGACTT GTTCGATCAG TTACAAGGTG CTTGTGTCTT TTCTAAGATT 122 GACTTGAGAT CTGGTTACCA TCAATTGAAA ATACGGGCAA CGTATGTGCC CAAGACTGCT 39449 |||||||||| | ||||| || |||||||||| |||||||||| || ||||||| ||||||||| GACTTGAGAT CCGGTTATCA TCAATTGAAA ATACGGGCAA CGGATGTGCC AAAGACTGCT 182 TTTCGGACCA GGTATAGGCA TTATGAGTTC TTAGTAATGT CTTTTGGGCT TACGAATGCC 39509 ||| | |||| ||||| |||| ||| | || |||| |||| ||||||| || || ||||||| TTTAGAACCA GGTATGGGCA TTACAAATTT GTAGTGATGT CTTTTGGTCT TATGAATGCC 242 CCTGCTGCTT TCATGAGCTT GATGAATGGG ATTTTTAAGC CATATCTGGA TCTCTTTGTC 39569 |||||||| | | ||||| || || || ||| |||||||||| ||||| |||| ||||||||| CCTGCTGCGT TTATGAGTTT AATAAAAGGG ATTTTTAAGC CATATTTGGA TCTCTTTGTG 302 ATCCTATTCA TCGATGATAT ATTGGTATAC TCAAAGAGCA AGAAGGAACA TGAGGAGCAC 39629 ||| |||| | | |||||||| | || ||||| || || || | || ||||||| ||| ||||| ATCGTATTTA TTGATGATAT ACTGATATAC TCTAAAAGTA AGGAGGAACA TGAAGAGCAT 362 TTGAGAATTG TATTGGAAAC GTTGAGGGAG AAAAAGCTTT ATGCCAAATT CTCCAAGTGT 39689 |||||||| | ||||||||| |||||||||| |||||| ||| ||||||| || ||| |||||| TTGAGAATGG TATTGGAAAT GTTGAGGGAG AAAAAGTTTT ATGCCAAGTT CTCTAAGTGT 422 GAGTTTTGGC TAGATTCAGT GTCTTTCTTG GGACACGTGG TTTCTAAGGA TGGAGTGATA 39749 |||||||||| ||||| ||| ||| |||||| || |||||| |||||||||| ||||||||| GAGTTTTGGC TAGATGTAGT GTCCTTCTTG GGGAACGTGG TTTCTAAGGA TGGAGTGATG 482 GTGGATCCAT CTAAGATTGA AATAGTGAGG AATTGGGTAA GACCTACTAA TGTGTCAGAA 39809 |||||||| | |||||||||| | ||||| | |||||||||| |||||||||| |||||||||| GTGGATCCTT CTAAGATTGA GACAGTGAAG AATTGGGTAA GACCTACTAA TGTGTCAGAA 542 GTAAGGAGAT TCGTTGGTTT AGCTAGCTAC TACCGCCGAT TTGTCAAGGG GTTC 39863 ||||||| | | ||||| || |||||||||| |||||||||| |||||||||| ||| ATAAGGAGCT TTGTTGGGTT AGCTAGCTAC TACCGCCGAT TTGTCAAGGG ATTC 596 hqPGS_C08HBa0027D09.1+_SGN-E375319- (39270 39863) ******************************************************************************** EST sequence 206 -strand 526 n (File: SGN-E204434-) 1 CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA TTGACTTGAG 61 ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG CTTTTAGAAC 121 CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG CCCCTGCTGC 181 GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG TGATCGTATT 241 TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC ATTTGAGAAT 301 GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT GTGAGTTTTG 361 GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA TGGTGGATCC 421 TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG AAATAAGGAG 481 CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATTC Predicted gene structure (within gDNA segment 35920 to 40499): Exon 1 39339 39863 ( 525 n); cDNA 2 526 ( 525 n); score: 0.878 MATCH C08HBa0027D09.1+ SGN-E204434- 0.878 525 0.998 C PGS_C08HBa0027D09.1+_SGN-E204434- (39339 39863) Alignment (genomic DNA sequence = upper lines): ATCGATGATT TGTTCGATCA GTTACAAGGT GCTTATACTT TCTCAAAAAT TGACTTGAGA 39398 || |||| | |||||||||| |||||||||| |||| | | | || || || |||||||||| ATTAATGACT TGTTCGATCA GTTACAAGGT GCTTGTGTCT TTTCTAAGAT TGACTTGAGA 61 TCTGGTTACC ATCAATTGAA AATACGGGCA ACGTATGTGC CCAAGACTGC TTTTCGGACC 39458 || ||||| | |||||||||| |||||||||| ||| |||||| | |||||||| |||| | ||| TCCGGTTATC ATCAATTGAA AATACGGGCA ACGGATGTGC CAAAGACTGC TTTTAGAACC 121 AGGTATAGGC ATTATGAGTT CTTAGTAATG TCTTTTGGGC TTACGAATGC CCCTGCTGCT 39518 |||||| ||| |||| | || |||| ||| |||||||| | ||| |||||| ||||||||| AGGTATGGGC ATTACAAATT TGTAGTGATG TCTTTTGGTC TTATGAATGC CCCTGCTGCG 181 TTCATGAGCT TGATGAATGG GATTTTTAAG CCATATCTGG ATCTCTTTGT CATCCTATTC 39578 || ||||| | | || || || |||||||||| |||||| ||| |||||||||| ||| |||| TTTATGAGTT TAATAAAAGG GATTTTTAAG CCATATTTGG ATCTCTTTGT GATCGTATTT 241 ATCGATGATA TATTGGTATA CTCAAAGAGC AAGAAGGAAC ATGAGGAGCA CTTGAGAATT 39638 || ||||||| || || |||| ||| || || ||| |||||| |||| ||||| |||||||| ATTGATGATA TACTGATATA CTCTAAAAGT AAGGAGGAAC ATGAAGAGCA TTTGAGAATG 301 GTATTGGAAA CGTTGAGGGA GAAAAAGCTT TATGCCAAAT TCTCCAAGTG TGAGTTTTGG 39698 |||||||||| ||||||||| ||||||| || |||||||| | |||| ||||| |||||||||| GTATTGGAAA TGTTGAGGGA GAAAAAGTTT TATGCCAAGT TCTCTAAGTG TGAGTTTTGG 361 CTAGATTCAG TGTCTTTCTT GGGACACGTG GTTTCTAAGG ATGGAGTGAT AGTGGATCCA 39758 |||||| || |||| ||||| ||| ||||| |||||||||| |||||||||| |||||||| CTAGATGTAG TGTCCTTCTT GGGGAACGTG GTTTCTAAGG ATGGAGTGAT GGTGGATCCT 421 TCTAAGATTG AAATAGTGAG GAATTGGGTA AGACCTACTA ATGTGTCAGA AGTAAGGAGA 39818 |||||||||| | | ||||| |||||||||| |||||||||| |||||||||| | ||||||| TCTAAGATTG AGACAGTGAA GAATTGGGTA AGACCTACTA ATGTGTCAGA AATAAGGAGC 481 TTCGTTGGTT TAGCTAGCTA CTACCGCCGA TTTGTCAAGG GGTTC 39863 || ||||| | |||||||||| |||||||||| |||||||||| | ||| TTTGTTGGGT TAGCTAGCTA CTACCGCCGA TTTGTCAAGG GATTC 526 hqPGS_C08HBa0027D09.1+_SGN-E204434- (39339 39863) ******************************************************************************** EST sequence 259 -strand 587 n (File: SGN-E352950-) 1 GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 61 GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 121 TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 181 GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 241 TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 301 TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 361 ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 421 GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 481 AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 541 ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG Predicted gene structure (within gDNA segment 37605 to 41804): Exon 1 40060 40646 ( 587 n); cDNA 1 587 ( 587 n); score: 0.886 MATCH C08HBa0027D09.1+ SGN-E352950- 0.886 587 1.000 C PGS_C08HBa0027D09.1+_SGN-E352950- (40060 40646) Alignment (genomic DNA sequence = upper lines): GCAATTAAAG GTGCATGAAC GTAACTATGC GACCCATGAT TTGGGGTTGG CTGCGGTAGT 40119 |||||||||| |||||||||| |||| ||| | |||||||||| |||| ||| | | || ||||| GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 60 GTTTGCATTA AAGCAATGGA GACATTATTT ATATGGGGTT AAGTGTGAAG TCTACATGGA 40179 | |||||||| ||| ||| || |||||||| | ||||||||| |||||||||| |||| ||||| GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 120 TCATCGTAGC CTACAGTGTG TCTTTACTCA GAAAGATTTG AATTTAAGAG AGAGAAGGTG 40239 ||||||||| |||||| || |||||||||| |||||||||| ||||| ||| |||| || | TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 180 GATGGAACTA CCGAAGGATT ATGACATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 40299 |||||| ||| | |||||| | |||| ||||| |||||||||| |||||||||| |||||||||| GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 240 TGTGGCAGAT GCCTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCCC ACTTGAAAGT 40359 |||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||| | || TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 300 TTCTAGACAT GCATTCGCTA GAGAGGTTCA GACTCTGGCT ATCGACTTTA TGAGGTTAGA 40419 ||||||| |||| |||| |||||||||| |||||||||| | ||| ||| ||||| |||| TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 360 GGTAAATGAG AAAGGAGGAT TGTTGGCTTG TATAGAGGCA AGATCTTCCT TTCTTGACAA 40479 |||||||| || |||| || | |||||||| | | |||||| |||||||||| ||||||| || ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 420 GATTAAGGGA AAGCAATTTA ATGATGAGAA GCTGATTCGG ATACGAGATA AGGTGTTGCG 40539 |||||| ||| ||||| |||| |||||||| ||||| || || ||||||| |||| |||| GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 480 AGGAGAGGCT AAAGAAGCAA TAATGGATGA GGAAGGTGTT TTGAGAATTA AGGGAAGGGT 40599 |||||||||| |||||||||| ||| ||| | |||||||||| ||||| |||| |||||| ||| AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 540 ATGTGTGCCC CGTGTTGATG ATTTGATCCA CACTATTCTC ACTGAGG 40646 |||||| ||| |||| || | ||||||| || ||||||||| || |||| ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG 587 hqPGS_C08HBa0027D09.1+_SGN-E352950- (40060 40646) ******************************************************************************** EST sequence 303 -strand 587 n (File: SGN-E357100-) 1 GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 61 GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 121 TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 181 GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 241 TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 301 TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 361 ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 421 GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 481 AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 541 ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG Predicted gene structure (within gDNA segment 37605 to 41804): Exon 1 40060 40646 ( 587 n); cDNA 1 587 ( 587 n); score: 0.886 MATCH C08HBa0027D09.1+ SGN-E357100- 0.886 587 1.000 C PGS_C08HBa0027D09.1+_SGN-E357100- (40060 40646) Alignment (genomic DNA sequence = upper lines): GCAATTAAAG GTGCATGAAC GTAACTATGC GACCCATGAT TTGGGGTTGG CTGCGGTAGT 40119 |||||||||| |||||||||| |||| ||| | |||||||||| |||| ||| | | || ||||| GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 60 GTTTGCATTA AAGCAATGGA GACATTATTT ATATGGGGTT AAGTGTGAAG TCTACATGGA 40179 | |||||||| ||| ||| || |||||||| | ||||||||| |||||||||| |||| ||||| GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 120 TCATCGTAGC CTACAGTGTG TCTTTACTCA GAAAGATTTG AATTTAAGAG AGAGAAGGTG 40239 ||||||||| |||||| || |||||||||| |||||||||| ||||| ||| |||| || | TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 180 GATGGAACTA CCGAAGGATT ATGACATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 40299 |||||| ||| | |||||| | |||| ||||| |||||||||| |||||||||| |||||||||| GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 240 TGTGGCAGAT GCCTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCCC ACTTGAAAGT 40359 |||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||| | || TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 300 TTCTAGACAT GCATTCGCTA GAGAGGTTCA GACTCTGGCT ATCGACTTTA TGAGGTTAGA 40419 ||||||| |||| |||| |||||||||| |||||||||| | ||| ||| ||||| |||| TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 360 GGTAAATGAG AAAGGAGGAT TGTTGGCTTG TATAGAGGCA AGATCTTCCT TTCTTGACAA 40479 |||||||| || |||| || | |||||||| | | |||||| |||||||||| ||||||| || ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 420 GATTAAGGGA AAGCAATTTA ATGATGAGAA GCTGATTCGG ATACGAGATA AGGTGTTGCG 40539 |||||| ||| ||||| |||| |||||||| ||||| || || ||||||| |||| |||| GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 480 AGGAGAGGCT AAAGAAGCAA TAATGGATGA GGAAGGTGTT TTGAGAATTA AGGGAAGGGT 40599 |||||||||| |||||||||| ||| ||| | |||||||||| ||||| |||| |||||| ||| AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 540 ATGTGTGCCC CGTGTTGATG ATTTGATCCA CACTATTCTC ACTGAGG 40646 |||||| ||| |||| || | ||||||| || ||||||||| || |||| ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG 587 hqPGS_C08HBa0027D09.1+_SGN-E357100- (40060 40646) ******************************************************************************** EST sequence 231 -strand 554 n (File: SGN-E352647-) 1 CCATGATTTG GAGTTAGCGG CAGTAGTGAT TGCATTAAAG TAATAGAGCC ATTATCTCTA 61 TGGGTTTAAG TGTGAAGTCT ATATGGATCA TCGTAGTTTA CAGTATGTCT TTACTCAGAA 121 AGATTTGAAT TTGAGACAGA GGAGATCGAT GGAGCTACTG AAGGACTATG ATATCACTAT 181 CTTGTATCAT CCGGGAAAGG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AGGCAGGGAG 241 CATGGGAAGT CTAGCTCACT TGCAGGTTTC TAGATGCCCA TTGGCTAGAG AGGTTCAGAC 301 TCTGGCTAAT GACCTTATGA GGCTAGAATT AAATGAGAAG GGAGAATTTT TGGCTTGTGT 361 GGAGGCAAGA TCTTCCTTTC TTGATAAGAT TAAAGGAAAG CAGTTTACCG ATGAGAAACT 421 GATCTGGATT CGAGATAAGG TAATGCGAGG AGAGGCTAAA GAAGCAAAAA TCGATAAGGA 481 AGGTGTTTTG AGGATTAAGG GAAAGGTATG TGTACCCCGT GCCGACGATT TGATTCACAC 541 TATTCTTACA GAGG Predicted gene structure (within gDNA segment 37935 to 41804): Exon 1 40093 40646 ( 554 n); cDNA 1 554 ( 554 n); score: 0.879 MATCH C08HBa0027D09.1+ SGN-E352647- 0.879 554 1.000 C PGS_C08HBa0027D09.1+_SGN-E352647- (40093 40646) Alignment (genomic DNA sequence = upper lines): CCATGATTTG GGGTTGGCTG CGGTAGTGTT TGCATTAAAG CAATGGAGAC ATTATTTATA 40152 |||||||||| | ||| || | | |||||| | |||||||||| ||| ||| | ||||| | || CCATGATTTG GAGTTAGCGG CAGTAGTGAT TGCATTAAAG TAATAGAGCC ATTATCTCTA 60 TGGGGTTAAG TGTGAAGTCT ACATGGATCA TCGTAGCCTA CAGTGTGTCT TTACTCAGAA 40212 |||| ||||| |||||||||| | |||||||| |||||| || |||| ||||| |||||||||| TGGGTTTAAG TGTGAAGTCT ATATGGATCA TCGTAGTTTA CAGTATGTCT TTACTCAGAA 120 AGATTTGAAT TTAAGAGAGA GAAGGTGGAT GGAACTACCG AAGGATTATG ACATCACTAT 40272 |||||||||| || ||| ||| | || | ||| ||| |||| | ||||| |||| | |||||||| AGATTTGAAT TTGAGACAGA GGAGATCGAT GGAGCTACTG AAGGACTATG ATATCACTAT 180 CTTGTATCAT CCGGGAAAGG CTAATGTTGT GGCAGATGCC TTAAGTAGAA AGGCAGGGAG 40332 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CTTGTATCAT CCGGGAAAGG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AGGCAGGGAG 240 CATGGGAAGT CTAGCCCACT TGAAAGTTTC TAGACATGCA TTCGCTAGAG AGGTTCAGAC 40392 |||||||||| ||||| |||| || | ||||| |||| || || ||||||| |||||||||| CATGGGAAGT CTAGCTCACT TGCAGGTTTC TAGATGCCCA TTGGCTAGAG AGGTTCAGAC 300 TCTGGCTATC GACTTTATGA GGTTAGAGGT AAATGAGAAA GGAGGATTGT TGGCTTGTAT 40452 |||||||| ||| |||||| || |||| | ||||||||| |||| ||| | |||||||| | TCTGGCTAAT GACCTTATGA GGCTAGAATT AAATGAGAAG GGAGAATTTT TGGCTTGTGT 360 AGAGGCAAGA TCTTCCTTTC TTGACAAGAT TAAGGGAAAG CAATTTAATG ATGAGAAGCT 40512 ||||||||| |||||||||| |||| ||||| ||| |||||| || |||| | ||||||| || GGAGGCAAGA TCTTCCTTTC TTGATAAGAT TAAAGGAAAG CAGTTTACCG ATGAGAAACT 420 GATTCGGATA CGAGATAAGG TGTTGCGAGG AGAGGCTAAA GAAGCAATAA TGGATGAGGA 40572 ||| |||| |||||||||| | ||||||| |||||||||| ||||||| || | ||| |||| GATCTGGATT CGAGATAAGG TAATGCGAGG AGAGGCTAAA GAAGCAAAAA TCGATAAGGA 480 AGGTGTTTTG AGAATTAAGG GAAGGGTATG TGTGCCCCGT GTTGATGATT TGATCCACAC 40632 |||||||||| || ||||||| ||| |||||| ||| |||||| | || |||| |||| ||||| AGGTGTTTTG AGGATTAAGG GAAAGGTATG TGTACCCCGT GCCGACGATT TGATTCACAC 540 TATTCTCACT GAGG 40646 |||||| || |||| TATTCTTACA GAGG 554 hqPGS_C08HBa0027D09.1+_SGN-E352647- (40093 40646) ******************************************************************************** EST sequence 257 -strand 542 n (File: SGN-E353207-) 1 AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAATAA GGGAAGGAGT ATGTGTACCC 61 CGCGTCGATG ATTTGATTCA CACTATTCTT ATATAGGCTC ATAGTTCGAA GTACTCTATA 121 CATCCTGGTG CAAACAAGAT GTATCGTGAC CTAAAGCAAC ATTTTTGGTG GAGTAGGATG 181 AAGCGTGACA TTGTTAATTT TGTTGCTCAA TGCCCGAATT GTCAGCAAGT AAAGTATGAA 241 CACCAGAGGC CTGGAGGGAC ACTTCAGAGA ATGCCCATTC CTGAATGGAA GTGGGAGAGA 301 ATTGCAATGG ACTTCGTGGT TAGTCATCCA AAGACGATGG GTAGGTATGA CTCTATTTGG 361 GTGATTGTTG ACAGATTAAC TAAGTCTGCT CACTCTATTT CGGTTAAGGT GACTTACAAT 421 GCAGAGAAGT TAGCCAAACT TTACATCTTA GAAATTGTTC GATTGCACGG AGTTCCACTC 481 TCCATCATAT CAGATAGAGG TACGCAATTT ACTTCTAAGT TTTGGAAAAC AGTACATGCC 541 GA Predicted gene structure (within gDNA segment 36566 to 42556): Exon 1 40550 41092 ( 543 n); cDNA 1 542 ( 542 n); score: 0.878 MATCH C08HBa0027D09.1+ SGN-E353207- 0.878 543 1.002 C PGS_C08HBa0027D09.1+_SGN-E353207- (40550 41092) Alignment (genomic DNA sequence = upper lines): AAAGAAGCAA TAATGGATGA GGAAGGTGTT TTGAGAATTA AGGGAAGG-G TATGTGTGCC 40608 |||||||||| ||| ||||| |||||||||| ||||||| || |||||||| | ||||||| || AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAA-TA AGGGAAGGAG TATGTGTACC 59 CCGTGTTGAT GATTTGATCC ACACTATTCT CACTGAGGCT CATAGCTCAA GGTATTCTAT 40668 ||| || ||| |||||||| | |||||||||| | ||||| ||||| || | ||| ||||| CCGCGTCGAT GATTTGATTC ACACTATTCT TATATAGGCT CATAGTTCGA AGTACTCTAT 119 ACATCCTGGT GCAACCAAGA TGTACCGCGA CCTAAAGCAA CACTTTTGGT GGAGTAGAAT 40728 |||||||||| |||| ||||| |||| || || |||||||||| || ||||||| ||||||| || ACATCCTGGT GCAAACAAGA TGTATCGTGA CCTAAAGCAA CATTTTTGGT GGAGTAGGAT 179 GAAGCGTGAC ATTGTGGAGT TTATTGCCAA ATGTCCAAAT TATCAGCAAG TAAAATATGA 40788 |||||||||| ||||| | | || |||| | ||| || ||| | |||||||| |||| ||||| GAAGCGTGAC ATTGTTAATT TTGTTGCTCA ATGCCCGAAT TGTCAGCAAG TAAAGTATGA 239 ACACCAGAGG CCCGGAGGAA CACTTTAGAG AATGCCTATT CCTGAATGGA AGTGGGAAAG 40848 |||||||||| || ||||| | ||||| |||| |||||| ||| |||||||||| ||||||| || ACACCAGAGG CCTGGAGGGA CACTTCAGAG AATGCCCATT CCTGAATGGA AGTGGGAGAG 299 GATTGCAATG GACTTCGTGG TTGGTCTTCC CAAGACAATG GGTAAGTATG ACTCCATTTG 40908 ||||||||| |||||||||| || ||| ||| ||||| ||| |||| ||||| |||| |||| AATTGCAATG GACTTCGTGG TTAGTCATCC AAAGACGATG GGTAGGTATG ACTCTATTT- 358 GGGTAATTTT TGATAGGTTA ACTAAGTCTG CTCACTTCAT TCCGGTCAAG GTGACTTACA 40968 |||| ||| | ||| || ||| |||||||||| |||||| || | |||| ||| |||||||||| GGGTGATTGT TGACAGATTA ACTAAGTCTG CTCACTCTAT TTCGGTTAAG GTGACTTACA 418 ATGCAGAGAA GTTAGCCAAA CTTTACATTT CGGAAGTTGT GCGATTGCAT GGAGTTCCAC 41028 |||||||||| |||||||||| |||||||| | ||| |||| |||||||| |||||||||| ATGCAGAGAA GTTAGCCAAA CTTTACATCT TAGAAATTGT TCGATTGCAC GGAGTTCCAC 478 TTTCCATTAT ATCAGATAGA GGTACGCAGT TTACTTCTAC GTTTTGGAAA ACATTGCATG 41088 | ||||| || |||||||||| |||||||| | ||||||||| |||||||||| ||| | |||| TCTCCATCAT ATCAGATAGA GGTACGCAAT TTACTTCTAA GTTTTGGAAA ACAGTACATG 538 CAGA 41092 | || CCGA 542 hqPGS_C08HBa0027D09.1+_SGN-E353207- (40550 41092) ******************************************************************************** EST sequence 166 -strand 654 n (File: SGN-E578131-) 1 CTTAGCAAGT CCGGCTTCCC ACAGGAGAAC CTTCACGTTT GCGGGCTTCC TCCTCTTCCA 61 GTAACCTCTT TTGACGCTCC TCCTCAGTTC GCAGAAAGAA TAACATTTTC CTCTTAGCTT 121 CCCTCTCCTG CTTCCTTGAT TGAATTATCT GGCTGATCCT TTCTCGTCTC TCCTGCTTCA 181 ATCTATTGAG TTCAGCTTCC CGGCTACTAA CAACTCTTTC TTGCAAAATC CTCTGCATAA 241 TTAGAAACAT ATCAGCGGAT CTGTTTTGTT AAGAGACCAA GACCAATCTT CAAGCAAGCC 301 CGTGGCTTCA CAAATTTTGA ACTAGTGGGA AAGTAGCGTC CATTAGCATT TCTAACCGAA 361 TGGTCAGCAT GTAAAGTATG AACAGCAAAG GCCTGGACGG ACACTTCAGA GAATGCCCAT 421 TCCTGAATGG AAGTGGGAGA GAATTGCAAT GGACTTCGTG GTTGGCCTTC CAAAGACAAT 481 GGGTAAGTAT GACTCCATTT GTGTAATTGT TGACAGATTG ACTAAGTCTG CTCATTGCAT 541 TCCGGTCAAG GTGACCTACA ATGTAGAGAA GTTAGTCAGA ATCTATATCT CAGAAATCGT 601 TCGATTGCAT GGAGTTCCAC TCTCCATCAT ATCAGATAGA GGTATGCAGT TTAC Predicted gene structure (within gDNA segment 35820 to 41752): Exon 1 37079 37086 ( 8 n); cDNA 360 367 ( 8 n); score: 0.875 Intron 1 37087 40774 (3688 n); Pd: 0.000 (s: 0), Pa: 0.421 (s: 0.84) Exon 2 40775 41062 ( 288 n); cDNA 368 654 ( 287 n); score: 0.875 MATCH C08HBa0027D09.1+ SGN-E578131- 0.875 296 0.453 C PGS_C08HBa0027D09.1+_SGN-E578131- (37079 37086,40775 41062) Alignment (genomic DNA sequence = upper lines): ATGGTTAGAA CTAGAGCAAC AACGAATGCG CCAACACCAA CATTGGCAAG ACAAGAAGCG 37138 ||||| || ATGGTCAG.. .......... .......... .......... .......... .......... 367 TCTGAGCCAG CCACTGGGGC TGTAGCTCGA AGAGGAGTAG TGGCAAGAGG CCGTGGAAGG 37198 .......... .......... .......... .......... .......... .......... 367 GGTCGCGGGA GGACGTCCTC TAGAGGAATA GGACAAGCAC CTAGCCCATC TGGTACTAGG 37258 .......... .......... .......... .......... .......... .......... 367 GCGGTGACTC CTCCACCGGC TGAAGAAGTA GTAAGAGAGG GGGAGGATGG GGAAAATGAG 37318 .......... .......... .......... .......... .......... .......... 367 CAAGTACAGA ATGAGGAATT ACCACCCCAA CCTACCCCAG AGATGATCAA TCAGGTTCTT 37378 .......... .......... .......... .......... .......... .......... 367 GCTTATCTTA GTGGGTTATC TGATCAAGGC CAGACACCTC CAGTGTTTTC TGCACCAGCA 37438 .......... .......... .......... .......... .......... .......... 367 CCTCAGGTTC CGGAGGTATA ACATGCAGCT ACTGTAGCTC CTCGCATGGA TGCCTCATTG 37498 .......... .......... .......... .......... .......... .......... 367 GAAATAGGCA CGTTTCCTCG TCTGACTACA GGACCTATAA TGATAAATGA TCAGCATGTA 37558 .......... .......... .......... .......... .......... .......... 367 CTTTTCAGTA AGTTCTTGAA ATTAAAACCT CCAATCTTCA AGGGTGCTGA ATCTGAGGAT 37618 .......... .......... .......... .......... .......... .......... 367 GCCTACGATT TTCTGGTTGA CTGTCATGAG CTACTACACA AGATGGGAAT AGTAAAACGG 37678 .......... .......... .......... .......... .......... .......... 367 TTTGGTGTTG AGTTTGTGAC TTATCAGTTT CAAGGAAACG CCAAAATGTG GTGGCGGTCA 37738 .......... .......... .......... .......... .......... .......... 367 CATGTTGACT GTCAACCAAC AGAGGCACCA CCTATGACTT GGGCATCATT CTCTAGCTTG 37798 .......... .......... .......... .......... .......... .......... 367 TTTATGGAGA AGTATATCCC CCGGACTTTG AGGGATAGGA AAAGAGATGA GTTCTTGAGC 37858 .......... .......... .......... .......... .......... .......... 367 CTAGAGCCAG GTAGGATGTC GGTTACTGCA TATGAGGCTA AGTTTCGTGC ATTATCTAGG 37918 .......... .......... .......... .......... .......... .......... 367 TATGCCACCC AACTTTGTTT CAGTCCACAA GAGCGGATTC ACCATTTTGT GAAGGGGTTG 37978 .......... .......... .......... .......... .......... .......... 367 AGGTCAGAAC TGCGGATTTC AGCCTTACAG GTAGCGGCTA CGGCAAAATC CTTTCAAGAA 38038 .......... .......... .......... .......... .......... .......... 367 GTGGTAGACT TCGTGATAAA GGTGGAAGGA GTGAAGCCAG ATGACTTCAC CATGGCATCG 38098 .......... .......... .......... .......... .......... .......... 367 ACATCAAAAA GGTTTCAAAA GGGAGGTGAG TTTAATTGTT CTTACTCTAG AGGACAGGGT 38158 .......... .......... .......... .......... .......... .......... 367 TCAGAAGGTT ACTCAGTCCG ACCAATTCAG TCTTCACTAC AGACTGTAGT TGGGGGTCCA 38218 .......... .......... .......... .......... .......... .......... 367 CCTCAGACCG GTCAACACTT CTATGAGAGA CCTATGCTTG ACTCCAGGGA GTGTTATGGA 38278 .......... .......... .......... .......... .......... .......... 367 TGTGGGGAGA CTGGACATAT TAGGAGGAAT TGTCCAAAAC AGAGTTATAT ACCCCCAATA 38338 .......... .......... .......... .......... .......... .......... 367 GCTAGAGGTA GAGGTGGTCA TGGTAGAGGC CGTTATTTTG GAGAACGCGG TGGCCGAGGT 38398 .......... .......... .......... .......... .......... .......... 367 AATGGTGGTC ACTAAAACGG CTGGGGTAAC GGGCAAACTG GAGCCACTAC AGCACAACAT 38458 .......... .......... .......... .......... .......... .......... 367 GGTAGGGGCA ACGGGCAGAC AGGTGATAGG GCCCATTGTT ATGCTTTCCC TGGGAGATCT 38518 .......... .......... .......... .......... .......... .......... 367 GAAGCGGAGA CATCTGATGC TGTCATCACA GGTAATCTTT TGGTTTGTGA TTGCATGGCT 38578 .......... .......... .......... .......... .......... .......... 367 TCTGTATTTT TTGATCATGG ATCCACATTT TCTTATGTAT CTTCCTCATT TGCTAATGGT 38638 .......... .......... .......... .......... .......... .......... 367 CTTAATTTAC ATTGTGAACT GCTTGACATG CCTATTCGTG TTTCTACTCC GGTGGGTGAG 38698 .......... .......... .......... .......... .......... .......... 367 TCTGTGATAG TTGAAAAAGT ATATAGGTCT GGGGAGCAAT ACTCATGTAG ACTTGGTTAT 38758 .......... .......... .......... .......... .......... .......... 367 CTCAGAAATG GTTGATTTTG ATGTAATTCT GGGTTTGACT TGGCTTTCTC TGAATTTTGC 38818 .......... .......... .......... .......... .......... .......... 367 GATCTTGGAT TGTAATGCTA AAACTGTGAC GTTAGCCAAG CCTGGGACAG ATCCGTTAGC 38878 .......... .......... .......... .......... .......... .......... 367 GTGGGAGGGC GACTACACTT CCACTCCGGT TCGTATCATC TCCGTTCTTC GTGCTAAGAG 38938 .......... .......... .......... .......... .......... .......... 367 AATGGTAAGT AAGGGGTGTT TAGATTTCTT GTCACATCTC AGGGATGATA CTACCCAAGT 38998 .......... .......... .......... .......... .......... .......... 367 ACCTTCAATT GAGTCAGTTT CGATAGTCTG TGAGTTTCTA GATGTGTTTC CCACAGATCT 39058 .......... .......... .......... .......... .......... .......... 367 TCCTGGTATG CCACCGGATA GAGATATTGA CTTCTGCATC GATCTTGAAC CGGGTACTCG 39118 .......... .......... .......... .......... .......... .......... 367 CCCCGTTTCT ATACCCCCTT ATAGAATGGC TCCCGCGGAG TTGAGCGAGT TAAAGGCTCA 39178 .......... .......... .......... .......... .......... .......... 367 ACTTCAAGAA TTGTTAGGAA ATGGCTTCAT TAGACAAAGT GCATATCCTT GGGGTGCTCT 39238 .......... .......... .......... .......... .......... .......... 367 TGTTTTGTTT GTGAAGAAGA ACGATGGAAG CTTTCGGATG TCCATAGACT ACAAATAACT 39298 .......... .......... .......... .......... .......... .......... 367 AAATAAGGTA ACGGTTAAGA ACAAGTATCC TCTTCCTCGT ATCGATGATT TGTTCGATCA 39358 .......... .......... .......... .......... .......... .......... 367 GTTACAAGGT GCTTATACTT TCTCAAAAAT TGACTTGAGA TCTGGTTACC ATCAATTGAA 39418 .......... .......... .......... .......... .......... .......... 367 AATACGGGCA ACGTATGTGC CCAAGACTGC TTTTCGGACC AGGTATAGGC ATTATGAGTT 39478 .......... .......... .......... .......... .......... .......... 367 CTTAGTAATG TCTTTTGGGC TTACGAATGC CCCTGCTGCT TTCATGAGCT TGATGAATGG 39538 .......... .......... .......... .......... .......... .......... 367 GATTTTTAAG CCATATCTGG ATCTCTTTGT CATCCTATTC ATCGATGATA TATTGGTATA 39598 .......... .......... .......... .......... .......... .......... 367 CTCAAAGAGC AAGAAGGAAC ATGAGGAGCA CTTGAGAATT GTATTGGAAA CGTTGAGGGA 39658 .......... .......... .......... .......... .......... .......... 367 GAAAAAGCTT TATGCCAAAT TCTCCAAGTG TGAGTTTTGG CTAGATTCAG TGTCTTTCTT 39718 .......... .......... .......... .......... .......... .......... 367 GGGACACGTG GTTTCTAAGG ATGGAGTGAT AGTGGATCCA TCTAAGATTG AAATAGTGAG 39778 .......... .......... .......... .......... .......... .......... 367 GAATTGGGTA AGACCTACTA ATGTGTCAGA AGTAAGGAGA TTCGTTGGTT TAGCTAGCTA 39838 .......... .......... .......... .......... .......... .......... 367 CTACCGCCGA TTTGTCAAGG GGTTCTCTTC TATTGCTTCC CAATTGACAA GCTTGACTAA 39898 .......... .......... .......... .......... .......... .......... 367 ACAGAATGTT CCATTCAGAA GCTCAAGACT TTGTTGACTA ATGCACCAAT TCTCACCTTG 39958 .......... .......... .......... .......... .......... .......... 367 CCCGTAGAAG GTAAGAATTT CATTGTCTAT TGTGATGCAT CCTATTCGGG TTTGTGTGCA 40018 .......... .......... .......... .......... .......... .......... 367 GTGCTAATGC AAGAGAAGAA TGTAATTGCT TATGCTTCGA GGCAATTAAA GGTGCATGAA 40078 .......... .......... .......... .......... .......... .......... 367 CGTAACTATG CGACCCATGA TTTGGGGTTG GCTGCGGTAG TGTTTGCATT AAAGCAATGG 40138 .......... .......... .......... .......... .......... .......... 367 AGACATTATT TATATGGGGT TAAGTGTGAA GTCTACATGG ATCATCGTAG CCTACAGTGT 40198 .......... .......... .......... .......... .......... .......... 367 GTCTTTACTC AGAAAGATTT GAATTTAAGA GAGAGAAGGT GGATGGAACT ACCGAAGGAT 40258 .......... .......... .......... .......... .......... .......... 367 TATGACATCA CTATCTTGTA TCATCCGGGA AAGGCTAATG TTGTGGCAGA TGCCTTAAGT 40318 .......... .......... .......... .......... .......... .......... 367 AGAAAGGCAG GGAGCATGGG AAGTCTAGCC CACTTGAAAG TTTCTAGACA TGCATTCGCT 40378 .......... .......... .......... .......... .......... .......... 367 AGAGAGGTTC AGACTCTGGC TATCGACTTT ATGAGGTTAG AGGTAAATGA GAAAGGAGGA 40438 .......... .......... .......... .......... .......... .......... 367 TTGTTGGCTT GTATAGAGGC AAGATCTTCC TTTCTTGACA AGATTAAGGG AAAGCAATTT 40498 .......... .......... .......... .......... .......... .......... 367 AATGATGAGA AGCTGATTCG GATACGAGAT AAGGTGTTGC GAGGAGAGGC TAAAGAAGCA 40558 .......... .......... .......... .......... .......... .......... 367 ATAATGGATG AGGAAGGTGT TTTGAGAATT AAGGGAAGGG TATGTGTGCC CCGTGTTGAT 40618 .......... .......... .......... .......... .......... .......... 367 GATTTGATCC ACACTATTCT CACTGAGGCT CATAGCTCAA GGTATTCTAT ACATCCTGGT 40678 .......... .......... .......... .......... .......... .......... 367 GCAACCAAGA TGTACCGCGA CCTAAAGCAA CACTTTTGGT GGAGTAGAAT GAAGCGTGAC 40738 .......... .......... .......... .......... .......... .......... 367 ATTGTGGAGT TTATTGCCAA ATGTCCAAAT TATCAGCAAG TAAAATATGA ACACCAGAGG 40798 || | |||| ||||| ||| || ||| .......... .......... .......... ......CATG TAAAGTATGA ACAGCAAAGG 391 CCCGGAGGAA CACTTTAGAG AATGCCTATT CCTGAATGGA AGTGGGAAAG GATTGCAATG 40858 || ||| | | ||||| |||| |||||| ||| |||||||||| ||||||| || ||||||||| CCTGGACGGA CACTTCAGAG AATGCCCATT CCTGAATGGA AGTGGGAGAG AATTGCAATG 451 GACTTCGTGG TTGGTCTTCC CAAGACAATG GGTAAGTATG ACTCCATTTG GGGTAATTTT 40918 |||||||||| |||| ||||| ||||||||| |||||||||| ||||||||| | |||||| | GACTTCGTGG TTGGCCTTCC AAAGACAATG GGTAAGTATG ACTCCATTT- GTGTAATTGT 510 TGATAGGTTA ACTAAGTCTG CTCACTTCAT TCCGGTCAAG GTGACTTACA ATGCAGAGAA 40978 ||| || || |||||||||| |||| | ||| |||||||||| ||||| |||| ||| |||||| TGACAGATTG ACTAAGTCTG CTCATTGCAT TCCGGTCAAG GTGACCTACA ATGTAGAGAA 570 GTTAGCCAAA CTTTACATTT CGGAAGTTGT GCGATTGCAT GGAGTTCCAC TTTCCATTAT 41038 ||||| || | | || || | | ||| | || ||||||||| |||||||||| | ||||| || GTTAGTCAGA ATCTATATCT CAGAAATCGT TCGATTGCAT GGAGTTCCAC TCTCCATCAT 630 ATCAGATAGA GGTACGCAGT TTAC 41062 |||||||||| |||| ||||| |||| ATCAGATAGA GGTATGCAGT TTAC 654 hqPGS_C08HBa0027D09.1+_SGN-E578131- (40775 41062) ******************************************************************************** EST sequence 74 -strand 542 n (File: SGN-E353207-) 1 AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAATAA GGGAAGGAGT ATGTGTACCC 61 CGCGTCGATG ATTTGATTCA CACTATTCTT ATATAGGCTC ATAGTTCGAA GTACTCTATA 121 CATCCTGGTG CAAACAAGAT GTATCGTGAC CTAAAGCAAC ATTTTTGGTG GAGTAGGATG 181 AAGCGTGACA TTGTTAATTT TGTTGCTCAA TGCCCGAATT GTCAGCAAGT AAAGTATGAA 241 CACCAGAGGC CTGGAGGGAC ACTTCAGAGA ATGCCCATTC CTGAATGGAA GTGGGAGAGA 301 ATTGCAATGG ACTTCGTGGT TAGTCATCCA AAGACGATGG GTAGGTATGA CTCTATTTGG 361 GTGATTGTTG ACAGATTAAC TAAGTCTGCT CACTCTATTT CGGTTAAGGT GACTTACAAT 421 GCAGAGAAGT TAGCCAAACT TTACATCTTA GAAATTGTTC GATTGCACGG AGTTCCACTC 481 TCCATCATAT CAGATAGAGG TACGCAATTT ACTTCTAAGT TTTGGAAAAC AGTACATGCC 541 GA Predicted gene structure (within gDNA segment 44402 to 40995): Exon 1 42352 41813 ( 540 n); cDNA 1 542 ( 542 n); score: 0.871 MATCH C08HBa0027D09.1- SGN-E353207- 0.871 540 0.996 C PGS_C08HBa0027D09.1-_SGN-E353207- (42352 41813) Alignment (genomic DNA sequence = upper lines): AAAGAGGAAA TAATTGATGA GGAAGGTTTT TTGAGAATTA AGGGAAGG-G TATGTGTGCC 42294 ||||| | || ||| ||||| ||||||| || ||||||| || |||||||| | ||||||| || AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAA-TA AGGGAAGGAG TATGTGTACC 59 CCGTGTTGAT AATTTGATTC ACACTATTCT TACAGAGGCT CATAGTTCAA GGCATTCTAT 42234 ||| || ||| ||||||||| |||||||||| || | ||||| |||||||| | | | ||||| CCGCGTCGAT GATTTGATTC ACACTATTCT TATATAGGCT CATAGTTCGA AGTACTCTAT 119 ACATCCTGGT GCAACCAAGA TGTATCGCGA CCTAAAGCAT TATTTTTGGT GGAGTAGGAT 42174 |||||||||| |||| ||||| ||||||| || ||||||||| ||||||||| |||||||||| ACATCCTGGT GCAAACAAGA TGTATCGTGA CCTAAAGCAA CATTTTTGGT GGAGTAGGAT 179 GAAGCGTGAC AATGTTGATT TTGTTGACCA ATGTCTGAAT TGTCAGCAGG TAAAGTATGA 42114 |||||||||| | |||| ||| |||||| || ||| | |||| |||||||| | |||||||||| GAAGCGTGAC ATTGTTAATT TTGTTGCTCA ATGCCCGAAT TGTCAGCAAG TAAAGTATGA 239 ACACCAGAGG CCCGGAGGAA CACTTCAAAA AATGCCCATT CCTGAATGGA AATGGGAAAG 42054 |||||||||| || ||||| | ||||||| | |||||||||| |||||||||| | ||||| || ACACCAGAGG CCTGGAGGGA CACTTCAGAG AATGCCCATT CCTGAATGGA AGTGGGAGAG 299 AATTGCAATG GATTTTGTGG TTAGTCTTCC AAAGACATTG GGTAAGTTTG ATTCTACTTG 41994 |||||||||| || || |||| |||||| ||| |||||| || |||| || || | |||| ||| AATTGCAATG GACTTCGTGG TTAGTCATCC AAAGACGATG GGTAGGTATG ACTCTATTTG 359 GGTAATTGTT GATAAATTAA CTAAGTCTGC TCACTTTATT CCGGTCAAGG TGACTTATAA 41934 ||| |||||| || | ||||| |||||||||| ||||| |||| |||| |||| ||||||| || GGTGATTGTT GACAGATTAA CTAAGTCTGC TCACTCTATT TCGGTTAAGG TGACTTACAA 419 TGCTAAGAAG TTAGCCAAAC TCTATACCTC AGAAATTGTT CGATTGCATG GAGTTCCACT 41874 ||| ||||| |||||||||| | || | || |||||||||| |||||||| | |||||||||| TGCAGAGAAG TTAGCCAAAC TTTACATCTT AGAAATTGTT CGATTGCACG GAGTTCCACT 479 TTCCATCATA TCAGATAGAG ATACGCAATT TACTTCTAAA TTTTGG--AA CATTGCATGC 41816 ||||||||| |||||||||| ||||||||| ||||||||| |||||| || || | ||||| CTCCATCATA TCAGATAGAG GTACGCAATT TACTTCTAAG TTTTGGAAAA CAGTACATGC 539 TGA 41813 || CGA 542 hqPGS_C08HBa0027D09.1-_SGN-E353207- (42352 41813) ******************************************************************************** EST sequence 76 -strand 587 n (File: SGN-E352950-) 1 GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 61 GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 121 TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 181 GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 241 TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 301 TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 361 ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 421 GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 481 AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 541 ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG Predicted gene structure (within gDNA segment 45540 to 38965): Exon 1 42842 42256 ( 587 n); cDNA 1 587 ( 587 n); score: 0.882 MATCH C08HBa0027D09.1- SGN-E352950- 0.882 587 1.000 C PGS_C08HBa0027D09.1-_SGN-E352950- (42842 42256) Alignment (genomic DNA sequence = upper lines): GCAATTGAAA GTGCATGAAC ATAACTATCC GACCCATGAT TTGGAGTTGG CTGCAGTCGT 42783 |||||| || |||||||||| ||| ||||| |||||||||| |||||||| | | ||||| || GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 60 GTTTGCATTA AAGCTATGAA GACATTATCT ATATGGGGTT AAGTGTGAAG TCTATACAGA 42723 | |||||||| ||| || | |||||||||| ||||||||| |||||||||| |||||| || GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 120 TCATCGTTGT TTTTAGTATG CTTTTACTCA GAAAGATTTG AATTTAAGGC AGAGGAGGTG 42663 ||||||| || || |||||| |||||||| |||||||||| ||||| || | ||||||| | TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 180 GATGGAACTA CTGAAGGACT ATGATATGAC TATTTTGTAT CACCCAGGAA AAGCTAATGT 42603 |||||| ||| |||||||||| ||||||| || ||| |||||| || || |||| | |||||||| GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 240 TGTGGCAGAT GCTTTAAGTA GAAAAGCAGG GAGCATGGGA AGTCTAGCCC ACTTACAGGT 42543 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||| | |||| ||||| TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 300 TTCTAGACGC CCATTGGCTA GAGAGGTTCA GACTCTAGCT AATGATGTTA TGAGGCTGGA 42483 ||||||| || |||||||||| |||||||||| |||||| ||| ||||| ||| ||||||| || TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 360 AGTACTAGAG AAGGGAGGAT TTCTGGCCTG TGTGGAGGCA AGATCTTCTT TTCTTGACAA 42423 | || ||| ||||||| || || |||| || |||||||||| |||||||| | ||||||| || ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 420 GATTAAGGGA AAACAGTTTA CTAATGAGAA ACTGATCCGA ATTCGAGATA TGGTATTACG 42363 |||||| ||| || ||||||| | ||||||| ||||||| | |||||||||| |||| | || GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 480 AGGAGAGGCT AAAGAGGAAA TAATTGATGA GGAAGGTTTT TTGAGAATTA AGGGAAGGGT 42303 |||||||||| ||||| | || ||| ||| | ||||||| || ||||| |||| |||||| ||| AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 540 ATGTGTGCCC CGTGTTGATA ATTTGATTCA CACTATTCTT ACAGAGG 42256 |||||| ||| |||| || |||||||||| |||||||||| ||||||| ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG 587 hqPGS_C08HBa0027D09.1-_SGN-E352950- (42842 42256) ******************************************************************************** EST sequence 127 -strand 587 n (File: SGN-E357100-) 1 GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 61 GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 121 TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 181 GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 241 TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 301 TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 361 ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 421 GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 481 AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 541 ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG Predicted gene structure (within gDNA segment 45540 to 38965): Exon 1 42842 42256 ( 587 n); cDNA 1 587 ( 587 n); score: 0.882 MATCH C08HBa0027D09.1- SGN-E357100- 0.882 587 1.000 C PGS_C08HBa0027D09.1-_SGN-E357100- (42842 42256) Alignment (genomic DNA sequence = upper lines): GCAATTGAAA GTGCATGAAC ATAACTATCC GACCCATGAT TTGGAGTTGG CTGCAGTCGT 42783 |||||| || |||||||||| ||| ||||| |||||||||| |||||||| | | ||||| || GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 60 GTTTGCATTA AAGCTATGAA GACATTATCT ATATGGGGTT AAGTGTGAAG TCTATACAGA 42723 | |||||||| ||| || | |||||||||| ||||||||| |||||||||| |||||| || GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 120 TCATCGTTGT TTTTAGTATG CTTTTACTCA GAAAGATTTG AATTTAAGGC AGAGGAGGTG 42663 ||||||| || || |||||| |||||||| |||||||||| ||||| || | ||||||| | TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 180 GATGGAACTA CTGAAGGACT ATGATATGAC TATTTTGTAT CACCCAGGAA AAGCTAATGT 42603 |||||| ||| |||||||||| ||||||| || ||| |||||| || || |||| | |||||||| GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 240 TGTGGCAGAT GCTTTAAGTA GAAAAGCAGG GAGCATGGGA AGTCTAGCCC ACTTACAGGT 42543 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||| | |||| ||||| TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 300 TTCTAGACGC CCATTGGCTA GAGAGGTTCA GACTCTAGCT AATGATGTTA TGAGGCTGGA 42483 ||||||| || |||||||||| |||||||||| |||||| ||| ||||| ||| ||||||| || TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 360 AGTACTAGAG AAGGGAGGAT TTCTGGCCTG TGTGGAGGCA AGATCTTCTT TTCTTGACAA 42423 | || ||| ||||||| || || |||| || |||||||||| |||||||| | ||||||| || ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 420 GATTAAGGGA AAACAGTTTA CTAATGAGAA ACTGATCCGA ATTCGAGATA TGGTATTACG 42363 |||||| ||| || ||||||| | ||||||| ||||||| | |||||||||| |||| | || GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 480 AGGAGAGGCT AAAGAGGAAA TAATTGATGA GGAAGGTTTT TTGAGAATTA AGGGAAGGGT 42303 |||||||||| ||||| | || ||| ||| | ||||||| || ||||| |||| |||||| ||| AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 540 ATGTGTGCCC CGTGTTGATA ATTTGATTCA CACTATTCTT ACAGAGG 42256 |||||| ||| |||| || |||||||||| |||||||||| ||||||| ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG 587 hqPGS_C08HBa0027D09.1-_SGN-E357100- (42842 42256) ******************************************************************************** EST sequence 53 -strand 554 n (File: SGN-E352647-) 1 CCATGATTTG GAGTTAGCGG CAGTAGTGAT TGCATTAAAG TAATAGAGCC ATTATCTCTA 61 TGGGTTTAAG TGTGAAGTCT ATATGGATCA TCGTAGTTTA CAGTATGTCT TTACTCAGAA 121 AGATTTGAAT TTGAGACAGA GGAGATCGAT GGAGCTACTG AAGGACTATG ATATCACTAT 181 CTTGTATCAT CCGGGAAAGG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AGGCAGGGAG 241 CATGGGAAGT CTAGCTCACT TGCAGGTTTC TAGATGCCCA TTGGCTAGAG AGGTTCAGAC 301 TCTGGCTAAT GACCTTATGA GGCTAGAATT AAATGAGAAG GGAGAATTTT TGGCTTGTGT 361 GGAGGCAAGA TCTTCCTTTC TTGATAAGAT TAAAGGAAAG CAGTTTACCG ATGAGAAACT 421 GATCTGGATT CGAGATAAGG TAATGCGAGG AGAGGCTAAA GAAGCAAAAA TCGATAAGGA 481 AGGTGTTTTG AGGATTAAGG GAAAGGTATG TGTACCCCGT GCCGACGATT TGATTCACAC 541 TATTCTTACA GAGG Predicted gene structure (within gDNA segment 45210 to 38965): Exon 1 42809 42256 ( 554 n); cDNA 1 554 ( 554 n); score: 0.879 MATCH C08HBa0027D09.1- SGN-E352647- 0.879 554 1.000 C PGS_C08HBa0027D09.1-_SGN-E352647- (42809 42256) Alignment (genomic DNA sequence = upper lines): CCATGATTTG GAGTTGGCTG CAGTCGTGTT TGCATTAAAG CTATGAAGAC ATTATCTATA 42750 |||||||||| ||||| || | |||| ||| | |||||||||| || || | ||||||| || CCATGATTTG GAGTTAGCGG CAGTAGTGAT TGCATTAAAG TAATAGAGCC ATTATCTCTA 60 TGGGGTTAAG TGTGAAGTCT ATACAGATCA TCGTTGTTTT TAGTATGCTT TTACTCAGAA 42690 |||| ||||| |||||||||| ||| ||||| |||| |||| |||||| | |||||||||| TGGGTTTAAG TGTGAAGTCT ATATGGATCA TCGTAGTTTA CAGTATGTCT TTACTCAGAA 120 AGATTTGAAT TTAAGGCAGA GGAGGTGGAT GGAACTACTG AAGGACTATG ATATGACTAT 42630 |||||||||| || || |||| |||| | ||| ||| |||||| |||||||||| |||| ||||| AGATTTGAAT TTGAGACAGA GGAGATCGAT GGAGCTACTG AAGGACTATG ATATCACTAT 180 TTTGTATCAC CCAGGAAAAG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AAGCAGGGAG 42570 |||||||| || ||||| | |||||||||| |||||||||| |||||||||| | |||||||| CTTGTATCAT CCGGGAAAGG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AGGCAGGGAG 240 CATGGGAAGT CTAGCCCACT TACAGGTTTC TAGACGCCCA TTGGCTAGAG AGGTTCAGAC 42510 |||||||||| ||||| |||| | |||||||| |||| ||||| |||||||||| |||||||||| CATGGGAAGT CTAGCTCACT TGCAGGTTTC TAGATGCCCA TTGGCTAGAG AGGTTCAGAC 300 TCTAGCTAAT GATGTTATGA GGCTGGAAGT ACTAGAGAAG GGAGGATTTC TGGCCTGTGT 42450 ||| |||||| || |||||| |||| ||| | | |||||| |||| |||| |||| ||||| TCTGGCTAAT GACCTTATGA GGCTAGAATT AAATGAGAAG GGAGAATTTT TGGCTTGTGT 360 GGAGGCAAGA TCTTCTTTTC TTGACAAGAT TAAGGGAAAA CAGTTTACTA ATGAGAAACT 42390 |||||||||| ||||| |||| |||| ||||| ||| ||||| |||||||| |||||||||| GGAGGCAAGA TCTTCCTTTC TTGATAAGAT TAAAGGAAAG CAGTTTACCG ATGAGAAACT 420 GATCCGAATT CGAGATATGG TATTACGAGG AGAGGCTAAA GAGGAAATAA TTGATGAGGA 42330 |||| | ||| ||||||| || || | ||||| |||||||||| || | || || | ||| |||| GATCTGGATT CGAGATAAGG TAATGCGAGG AGAGGCTAAA GAAGCAAAAA TCGATAAGGA 480 AGGTTTTTTG AGAATTAAGG GAAGGGTATG TGTGCCCCGT GTTGATAATT TGATTCACAC 42270 |||| ||||| || ||||||| ||| |||||| ||| |||||| | || ||| |||||||||| AGGTGTTTTG AGGATTAAGG GAAAGGTATG TGTACCCCGT GCCGACGATT TGATTCACAC 540 TATTCTTACA GAGG 42256 |||||||||| |||| TATTCTTACA GAGG 554 hqPGS_C08HBa0027D09.1-_SGN-E352647- (42809 42256) ******************************************************************************** EST sequence 86 -strand 694 n (File: SGN-E353359-) 1 GCAAGGTAGG ATGTAGGTCA ATGCATATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC 61 CACTCAACTT TGTTTCAGTC CACAAGAGAG GATTCGTCGT TTTGTGAAAG GGTTGAGGTC 121 AGAGTTGCGG ATTTCAGCGT TACAGGTAGC GGCTACGGCA AAATCCTTGC AAGAAATGGT 181 TGACTTCGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG 241 TAATGCTAAA ACCGTGACGT TAGCCAAGCC TGGGACAGAT CTGTTAGTGT AGGAGGGTGA 301 CTACACTTCC AATCCGGTGC GTATCATCTC CTTTCTTCGT GCTAAGAAAA TGGTTAGTAA 361 AGGGTGTTTA GCTTTCTTGG CACATCTCAA GGATAACACT ACCCAAGTAC CTTCGATTGA 421 CTCAGTTTCA GTAGTTCGTG AGTTTATGGA TGTGTTCCCT GCAGATCATC CTGGTATGCC 481 ACCGGATAGG GATATTGACT TCTGTATTGA TCTCGAACCG GGCACACGCC CCATTTTTAT 541 ACCCCCTTAT AGAATGGCTC CCGCAGAGTT AAGAGAGTTA AAGGCACAAC TTCAAGAGTT 601 ATTGAACAAA GGCTTCATTA GACCAAGTGC ATCTCCTTGG GGTGCTCCGG TTTTGTTGTA 661 AAGATCGGCA GTTTTTGAAT GTGCATAGAC TACA Predicted gene structure (within gDNA segment 46608 to 40232): Exon 1 45122 44948 ( 175 n); cDNA 1 175 ( 175 n); score: 0.851 Intron 1 44947 44168 ( 780 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.98) Exon 2 44167 43642 ( 526 n); cDNA 176 694 ( 519 n); score: 0.854 MATCH C08HBa0027D09.1- SGN-E353359- 0.853 701 1.010 C PGS_C08HBa0027D09.1-_SGN-E353359- (45122 44948,44167 43642) Alignment (genomic DNA sequence = upper lines): GCAAGGCAGG ATGTATGTTA CTGCTTATGA GGCTAAATTT CGTGCACTAT CCAGGTATGC 45063 |||||| ||| ||||| || | ||| ||||| |||||| ||| |||||||||| |||| ||||| GCAAGGTAGG ATGTAGGTCA ATGCATATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC 60 CACCCAGCTT TGCTTCAGTC CACAAGAGCG GATTTGCCGT TTTGTGAAAG GATTGAGGTC 45003 ||| || ||| || ||||||| |||||||| | |||| | ||| |||||||||| | |||||||| CACTCAACTT TGTTTCAGTC CACAAGAGAG GATTCGTCGT TTTGTGAAAG GGTTGAGGTC 120 AGATTTGCAG ATCCCAGCCT TACAGGTAGC TGTTGCAGTA AAATCCTTTC AGGAAGTGGT 44943 ||| |||| | || |||| | |||||||||| | | | | | |||||||| | | ||| AGAGTTGCGG ATTTCAGCGT TACAGGTAGC GGCTACGGCA AAATCCTTGC AAGAA..... 175 TGATTTTGTG ATAGAAGTGG AGGGGGTGAA GCCAGACGAC TTCACCATGG CGTCGACATC 44883 .......... .......... .......... .......... .......... .......... 175 TAAGAAGTTC CGTAAGGGAG GTGAATTTAG TGGTTCTTAC TCCAGAGGGC AGAGTTCAGG 44823 .......... .......... .......... .......... .......... .......... 175 AGGTTACCCA GCCCGACCTA TTCAGTCTTC ACTGCAGGCT GTAGATGGGG GTCCATCGCA 44763 .......... .......... .......... .......... .......... .......... 175 GACCAGTCAA CATTTCTCTG AGTTTGGAGG TTATCCCCAG ACTTCGTCAT TCTCACAGAG 44703 .......... .......... .......... .......... .......... .......... 175 ACCTATGCTT GACTCCAAAA ATTGTTATGG ATGTGGAGAG ACTGGACATA TTAGGAGGTA 44643 .......... .......... .......... .......... .......... .......... 175 TTGTCCAAAA CAGAGTTACA GACCCCCAAT AGTTAGAGGT AGAGGTGGTC ATGGGAGAGG 44583 .......... .......... .......... .......... .......... .......... 175 CCGCCATTCT GGAGGATGTG GTGTCCAAGG TAATGGTGGT CACCAAATCA GCCGGGGTGG 44523 .......... .......... .......... .......... .......... .......... 175 CGGGCAAGCT GGAGCTACTA CAGCGCAACA TGGTAGGGGC AACGGGCAGA CAGGTGATAG 44463 .......... .......... .......... .......... .......... .......... 175 GGCCCATTGT TATGCTTTCC CCGGGAGGTC TGAAGCAGAG ACATCTGATG TTGTTATCAC 44403 .......... .......... .......... .......... .......... .......... 175 AGGTAATCTT TTGGTCTGTG ATTGCATGGC TTCTGTATTA TTTGATCTTG GATCCACATT 44343 .......... .......... .......... .......... .......... .......... 175 TTCATATGTA TCTTCCTCAT TTGCTACTGA TCTTGATTTA CATTATGATT TGCTTGACAT 44283 .......... .......... .......... .......... .......... .......... 175 GCCTATTCGT GTCTCTACTC CTGTGGGTGA GTCTGTGATA GCTGAGAAGG TGTATAGGTC 44223 .......... .......... .......... .......... .......... .......... 175 TTGTCTTGTG ACTTTTGTGG GGAGCAATAC TCATGTAGAT TTGATTATTC TAGAGATGGT 44163 ||||| .......... .......... .......... .......... .......... .....ATGGT 180 TGATTTCGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTAGATTA 44103 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| TGACTTCGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG 240 TAATGCTAAA ACTGTGACAT TGGCCAAGCC TGGGACAGAT CCGTTAGTGT GGGAGGTTGA 44043 |||||||||| || ||||| | | |||||||| |||||||||| | |||||||| ||||| ||| TAATGCTAAA ACCGTGACGT TAGCCAAGCC TGGGACAGAT CTGTTAGTGT AGGAGGGTGA 300 CTATATTTCC ACTCCAGTTC GTATTATCTC TTTTCTTCGT GCTAAGAGGA TAATTAGTAA 43983 ||| | |||| | ||| || | |||| ||||| ||||||||| ||||||| | | ||||||| CTACACTTCC AATCCGGTGC GTATCATCTC CTTTCTTCGT GCTAAGAAAA TGGTTAGTAA 360 GGGTTGTTTA GCTTTCTTGG CCCATCTTAG GGATGATACT TCCAAAGTAC CTTCGATTGA 43923 || |||||| |||||||||| | ||||| | |||| | ||| || |||||| |||||||||| AGGGTGTTTA GCTTTCTTGG CACATCTCAA GGATAACACT ACCCAAGTAC CTTCGATTGA 420 GTCTGTTTCG ATAGTCTGTG AGTTCCTGGA TGTGTTTCCT GCAGCTCTTC CTGGTATGCC 43863 || ||||| |||| ||| |||| |||| |||||| ||| |||| || || |||||||||| CTCAGTTTCA GTAGTTCGTG AGTTTATGGA TGTGTTCCCT GCAGATCATC CTGGTATGCC 480 ACCAGATAGG GATATTGAGT TTTGTATTAA TCTGGAGCCG GGTACTCGCC CCATTTCCAT 43803 ||| |||||| |||||||| | | |||||| | ||| || ||| || || |||| |||||| || ACCGGATAGG GATATTGACT TCTGTATTGA TCTCGAACCG GGCACACGCC CCATTTTTAT 540 ACCCCCTTAT AGAATGGCTC CAGCTGAGTT AAGGGAGTTA AAGACCCAAC TTCAAGAATT 43743 |||||||||| |||||||||| | || ||||| ||| |||||| ||| | |||| ||||||| || ACCCCCTTAT AGAATGGCTC CCGCAGAGTT AAGAGAGTTA AAGGCACAAC TTCAAGAGTT 600 GTTAGGAAAA GGCTTTATTA GACCAAGTGC ATCCCCTTGG GGTGCTCCTA TTTTATTTGT 43683 || ||| ||||| |||| |||||||||| ||| |||||| |||||||| |||| |||| ATTGAACAAA GGCTTCATTA GACCAAGTGC ATCTCCTTGG GGTGCTCCGG TTTT-GTTGT 659 GAAGAAGAAG GATGGAAGTT TTTGGATGTG CATAGACTAC A 43642 | ||| | || |||| |||| ||||| |||||||||| | --A-AAG-A- -TCGGCAGTT TTTGAATGTG CATAGACTAC A 694 hqPGS_C08HBa0027D09.1-_SGN-E353359- (45122 44948,44167 43642) ******************************************************************************** EST sequence 22 -strand 712 n (File: SGN-E379315-) 1 CCGCAGAGTT AAGAGAGTTA AAAGACCACT TCAAAGAGTT GTGAGCAAAG GCTTCATTAG 61 ACCAACTGCA TCTCCTTGGG GTGCTCCGGT TTTGTTTGTA AAGAAGAAGG ATTGGAGTTT 121 TCGGATGTGC ATAGGCTACC GGCAGTGNAA CAAGGTAACC ATAAAGAACA AGTATCCTCT 181 TCCTCGCATT AATGACTTGT TCGATCAGTT ACAAGGTGCT TGTGTCTTTT CTAAGATTGA 241 CTTGAGATCC GGTTATCATC AATTGAAAAT ACGGGCAACG GATGTGCCAA AGACTGCTTT 301 TAGAACCAGG TATGGGCATT ACAAATTTGT AGTGATGTCT TTTGGTCTTA TGAATGCCCC 361 TGCTGCGTTT ATGAGTTTAA TAAAAGGGAT TTTTAAGCCA TATTTGGATC TCTTTGTGAT 421 CGTATTTATT GATGATATAC TGATATACTC TAAAAGTAAG GAGGAACATG AAGAGCATTT 481 GAGAATGGTA TTGGAAATGT TGAGGGAGAA AAAGTTTTAT GCCAAGTTCT CTAAGTGTGA 541 GTTTTGGCTA GATGTAGTGT CCTTCTTGGG GAACGTGGTT TCTAAGGATG GAGTGATGGT 601 GGATCCTTCT AAGATTGAGA CAGTGAAGAA TTGGGTAAGA CCTACTAATG TGTCAGAAAT 661 AAGGAGCTTT GTTGGGTTAG CTAGCTACTA CCGCCGATTT GTCAAGGGAT TC Predicted gene structure (within gDNA segment 46641 to 41516): Exon 1 43780 43071 ( 710 n); cDNA 3 711 ( 709 n); score: 0.856 MATCH C08HBa0027D09.1- SGN-E379315- 0.856 710 0.997 C PGS_C08HBa0027D09.1-_SGN-E379315- (43780 43071) Alignment (genomic DNA sequence = upper lines): GCTGAGTTAA GGGAGTTAAA GACCCAACTT CAAGAATTGT TAGGAAAAGG CTTTATTAGA 43721 || ||||||| | |||||||| ||| | |||| |||| | | ||||| ||| |||||| GCAGAGTTAA GAGAGTTAAA AGACCACTTC AAAGAGTTGT GA-GCAAAGG CTTCATTAGA 61 CCAAGTGCAT CCCCTTGGGG TGCTCCTATT TTATTTGTGA AGAAGAAGGA TGGAAGTTTT 43661 |||| ||||| | |||||||| |||||| || || ||||| | |||||||||| | | |||||| CCAACTGCAT CTCCTTGGGG TGCTCCGGTT TTGTTTGTAA AGAAGAAGGA TTGGAGTTTT 121 TGGATGTGCA TAGACTACAG GCAACTGAAT AAGGTAAATA TTAAGAACAA GTATCCTATT 43601 ||||||||| ||| |||| | ||| || ||||||| | | |||||||| ||||||| || CGGATGTGCA TAGGCTACCG GCAGTGNAAC AAGGTAACCA TAAAGAACAA GTATCCTCTT 181 CCTCACATTG ATGATTTGTT CGATCAGTTA CAAGGTGCTT GTACCTTCTC AAAAATTGAT 43541 |||| |||| |||| ||||| |||||||||| |||||||||| || ||| || || ||||| CCTCGCATTA ATGACTTGTT CGATCAGTTA CAAGGTGCTT GTGTCTTTTC TAAGATTGAC 241 TTGAGATTTG GTTATCATCA ATTGAAAATA GGGGCAGCAG ATGTGCCAAA GACTGCTTTT 43481 ||||||| | |||||||||| |||||||||| ||||| | | |||||||||| |||||||||| TTGAGATCCG GTTATCATCA ATTGAAAATA CGGGCAACGG ATGTGCCAAA GACTGCTTTT 301 CAAACCAGGT ATGAACATTA TGAATTCTTA GTAATGTCTT TTGGGCTTAC GAATGCCCCT 43421 |||||||| ||| ||||| |||| || || ||||||| |||| |||| |||||||||| AGAACCAGGT ATGGGCATTA CAAATTTGTA GTGATGTCTT TTGGTCTTAT GAATGCCCCT 361 TCTTCTTTCA TGAGCCTGAT GAACGGGATT TTTAAGCCAT ATCTGGATCT CGTTGTTATT 43361 || | || | |||| | || || |||||| |||||||||| || ||||||| | |||| || GCTGCGTTTA TGAGTTTAAT AAAAGGGATT TTTAAGCCAT ATTTGGATCT CTTTGTGATC 421 GTATTTATTG ATGATATACT GATATACTCA AAGAGCAGGA AAGAACATGA GGAGCATTTG 43301 |||||||||| |||||||||| ||||||||| || || | | | |||||||| ||||||||| GTATTTATTG ATGATATACT GATATACTCT AAAAGTAAGG AGGAACATGA AGAGCATTTG 481 AAAATTGTAT TGGAATTGTT GAGGGAGAAA AGGCTTTATG CCAAATTCTT TAAGTGTGAG 43241 | ||| |||| ||||| |||| |||||||||| | | |||||| |||| |||| |||||||||| AGAATGGTAT TGGAAATGTT GAGGGAGAAA AAGTTTTATG CCAAGTTCTC TAAGTGTGAG 541 TTTTGGCTAG ATTCAGTGTC CTTCTTGGGG CACGTGGTTT CTAAGGATGG AGTGATGGTG 43181 |||||||||| || |||||| |||||||||| ||||||||| |||||||||| |||||||||| TTTTGGCTAG ATGTAGTGTC CTTCTTGGGG AACGTGGTTT CTAAGGATGG AGTGATGGTG 601 GATCCATCTA AGATTGAAGC AGTGAAGAGT TGGGTAACAC CTACTAATGT TACAGAGGTA 43121 ||||| |||| ||||||| | |||||||| | ||||||| || |||||||||| |||| || GATCCTTCTA AGATTGAGAC AGTGAAGAAT TGGGTAAGAC CTACTAATGT GTCAGAAATA 661 AGGAGCTTTG CTGGTTTGGC TAGCTACTAC CGTCGATTTG TCAAGGGATT 43071 |||||||||| ||| || || |||||||||| || ||||||| |||||||||| AGGAGCTTTG TTGGGTTAGC TAGCTACTAC CGCCGATTTG TCAAGGGATT 711 hqPGS_C08HBa0027D09.1-_SGN-E379315- (43780 43071) ******************************************************************************** EST sequence 43 -strand 596 n (File: SGN-E375319-) 1 GTTTTCGGAT GTGCATAGGC TACCGGCAGT TGAACAAGGT AACCATAAAG AACAAGTATC 61 CTCTTCCTCG CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA 121 TTGACTTGAG ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG 181 CTTTTAGAAC CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG 241 CCCCTGCTGC GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG 301 TGATCGTATT TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC 361 ATTTGAGAAT GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT 421 GTGAGTTTTG GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA 481 TGGTGGATCC TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG 541 AAATAAGGAG CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATTC Predicted gene structure (within gDNA segment 45481 to 41516): Exon 1 43665 43071 ( 595 n); cDNA 1 595 ( 595 n); score: 0.869 MATCH C08HBa0027D09.1- SGN-E375319- 0.869 595 0.998 C PGS_C08HBa0027D09.1-_SGN-E375319- (43665 43071) Alignment (genomic DNA sequence = upper lines): GTTTTTGGAT GTGCATAGAC TACAGGCAAC TGAATAAGGT AAATATTAAG AACAAGTATC 43606 ||||| |||| |||||||| | ||| |||| |||| ||||| || || ||| |||||||||| GTTTTCGGAT GTGCATAGGC TACCGGCAGT TGAACAAGGT AACCATAAAG AACAAGTATC 60 CTATTCCTCA CATTGATGAT TTGTTCGATC AGTTACAAGG TGCTTGTACC TTCTCAAAAA 43546 || |||||| |||| |||| |||||||||| |||||||||| ||||||| | || || || | CTCTTCCTCG CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA 120 TTGATTTGAG ATTTGGTTAT CATCAATTGA AAATAGGGGC AGCAGATGTG CCAAAGACTG 43486 |||| ||||| || |||||| |||||||||| ||||| |||| | | |||||| |||||||||| TTGACTTGAG ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG 180 CTTTTCAAAC CAGGTATGAA CATTATGAAT TCTTAGTAAT GTCTTTTGGG CTTACGAATG 43426 ||||| ||| |||||||| ||||| ||| | |||| || ||||||||| |||| ||||| CTTTTAGAAC CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG 240 CCCCTTCTTC TTTCATGAGC CTGATGAACG GGATTTTTAA GCCATATCTG GATCTCGTTG 43366 ||||| || | || ||||| | || || | |||||||||| ||||||| || |||||| ||| CCCCTGCTGC GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG 300 TTATTGTATT TATTGATGAT ATACTGATAT ACTCAAAGAG CAGGAAAGAA CATGAGGAGC 43306 | || ||||| |||||||||| |||||||||| |||| || || | | | ||| ||||| |||| TGATCGTATT TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC 360 ATTTGAAAAT TGTATTGGAA TTGTTGAGGG AGAAAAGGCT TTATGCCAAA TTCTTTAAGT 43246 |||||| ||| ||||||||| ||||||||| |||||| | | ||||||||| |||| ||||| ATTTGAGAAT GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT 420 GTGAGTTTTG GCTAGATTCA GTGTCCTTCT TGGGGCACGT GGTTTCTAAG GATGGAGTGA 43186 |||||||||| ||||||| | |||||||||| ||||| |||| |||||||||| |||||||||| GTGAGTTTTG GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA 480 TGGTGGATCC ATCTAAGATT GAAGCAGTGA AGAGTTGGGT AACACCTACT AATGTTACAG 43126 |||||||||| ||||||||| || |||||| ||| |||||| || ||||||| ||||| ||| TGGTGGATCC TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG 540 AGGTAAGGAG CTTTGCTGGT TTGGCTAGCT ACTACCGTCG ATTTGTCAAG GGATT 43071 | ||||||| ||||| ||| || ||||||| ||||||| || |||||||||| ||||| AAATAAGGAG CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATT 595 hqPGS_C08HBa0027D09.1-_SGN-E375319- (43665 43071) ******************************************************************************** EST sequence 29 -strand 526 n (File: SGN-E204434-) 1 CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA TTGACTTGAG 61 ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG CTTTTAGAAC 121 CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG CCCCTGCTGC 181 GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG TGATCGTATT 241 TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC ATTTGAGAAT 301 GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT GTGAGTTTTG 361 GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA TGGTGGATCC 421 TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG AAATAAGGAG 481 CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATTC Predicted gene structure (within gDNA segment 44781 to 41516): Exon 1 43595 43071 ( 525 n); cDNA 1 525 ( 525 n); score: 0.872 MATCH C08HBa0027D09.1- SGN-E204434- 0.872 525 0.998 C PGS_C08HBa0027D09.1-_SGN-E204434- (43595 43071) Alignment (genomic DNA sequence = upper lines): CATTGATGAT TTGTTCGATC AGTTACAAGG TGCTTGTACC TTCTCAAAAA TTGATTTGAG 43536 |||| |||| |||||||||| |||||||||| ||||||| | || || || | |||| ||||| CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA TTGACTTGAG 60 ATTTGGTTAT CATCAATTGA AAATAGGGGC AGCAGATGTG CCAAAGACTG CTTTTCAAAC 43476 || |||||| |||||||||| ||||| |||| | | |||||| |||||||||| ||||| ||| ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG CTTTTAGAAC 120 CAGGTATGAA CATTATGAAT TCTTAGTAAT GTCTTTTGGG CTTACGAATG CCCCTTCTTC 43416 |||||||| ||||| ||| | |||| || ||||||||| |||| ||||| ||||| || | CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG CCCCTGCTGC 180 TTTCATGAGC CTGATGAACG GGATTTTTAA GCCATATCTG GATCTCGTTG TTATTGTATT 43356 || ||||| | || || | |||||||||| ||||||| || |||||| ||| | || ||||| GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG TGATCGTATT 240 TATTGATGAT ATACTGATAT ACTCAAAGAG CAGGAAAGAA CATGAGGAGC ATTTGAAAAT 43296 |||||||||| |||||||||| |||| || || | | | ||| ||||| |||| |||||| ||| TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC ATTTGAGAAT 300 TGTATTGGAA TTGTTGAGGG AGAAAAGGCT TTATGCCAAA TTCTTTAAGT GTGAGTTTTG 43236 ||||||||| ||||||||| |||||| | | ||||||||| |||| ||||| |||||||||| GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT GTGAGTTTTG 360 GCTAGATTCA GTGTCCTTCT TGGGGCACGT GGTTTCTAAG GATGGAGTGA TGGTGGATCC 43176 ||||||| | |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA TGGTGGATCC 420 ATCTAAGATT GAAGCAGTGA AGAGTTGGGT AACACCTACT AATGTTACAG AGGTAAGGAG 43116 ||||||||| || |||||| ||| |||||| || ||||||| ||||| ||| | ||||||| TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG AAATAAGGAG 480 CTTTGCTGGT TTGGCTAGCT ACTACCGTCG ATTTGTCAAG GGATT 43071 ||||| ||| || ||||||| ||||||| || |||||||||| ||||| CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATT 525 hqPGS_C08HBa0027D09.1-_SGN-E204434- (43595 43071) ******************************************************************************** EST sequence 110 -strand 679 n (File: SGN-E368762-) 1 CACTCGCCCC ATTTCTATAC CCCCTTATAG AATGGCTCCC GCGGAGTTAA GAGAGTTAAA 61 GGCCCAACTT CAAGAGTTTT TGAGCAAAGT CTTCATTAGA CCAAGTGCAT CTCCTTGGGG 121 TGCTCCGGTT TGGTTTGTGA AGAAGAAGGA TGGGAGTTTT CGGATGTGCA TAGACTACCG 181 GCAGTTGAAC AAGGTAACTA TTAAGAACAA GTATCCACTT CCTCGCATTG ATGACTTGTT 241 CGATCAGTTA CAAGGTGCTT GTGTCTTCTC TAAGATTGAC TTGAGATCCG GTTATCATCA 301 ATTGAAAATA CGGGCAACGG ATGTGCCAAA GACTGCTTTT AGAACCAGGT ATGGGCATTA 361 CGAATTTGTA GTGATGTCTT TTGGTCTTAC GAATGCCCCT GCTGCGTTCA TGAGCTTGAT 421 GAACGGGATT TTAAGCCATA TTTGGATCTC TTTGTCATCA TGTTTATTGA TGATATACTG 481 ATATACTCTA ATAGTAAGAA GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG 541 AGGGAGAAAA AGCTTTATGC CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC 601 TTCTTGGGGC ACGTGGTTTC TAAGGATGGA GTGATGGTGG ATCCTTGTAA GATTGAGACA 661 GTGAAGAATT GGGTGAGAC Predicted gene structure (within gDNA segment 45627 to 42226): Exon 1 43819 43141 ( 679 n); cDNA 2 679 ( 678 n); score: 0.885 MATCH C08HBa0027D09.1- SGN-E368762- 0.885 679 1.000 C PGS_C08HBa0027D09.1-_SGN-E368762- (43819 43141) Alignment (genomic DNA sequence = upper lines): ACTCGCCCCA TTTCCATACC CCCTTATAGA ATGGCTCCAG CTGAGTTAAG GGAGTTAAAG 43760 |||||||||| |||| ||||| |||||||||| |||||||| | | |||||||| ||||||||| ACTCGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG CGGAGTTAAG AGAGTTAAAG 61 ACCCAACTTC AAGAATTGTT AGGAAAAGGC TTTATTAGAC CAAGTGCATC CCCTTGGGGT 43700 ||||||||| |||| || || | |||| | || ||||||| |||||||||| ||||||||| GCCCAACTTC AAGAGTTTTT GAGCAAAGTC TTCATTAGAC CAAGTGCATC TCCTTGGGGT 121 GCTCCTATTT TATTTGTGAA GAAGAAGGAT GGAAGTTTTT GGATGTGCAT AGACTACAGG 43640 ||||| ||| |||||||| |||||||||| || |||||| |||||||||| ||||||| || GCTCCGGTTT GGTTTGTGAA GAAGAAGGAT GGGAGTTTTC GGATGTGCAT AGACTACCGG 181 CAACTGAATA AGGTAAATAT TAAGAACAAG TATCCTATTC CTCACATTGA TGATTTGTTC 43580 || |||| | |||||| ||| |||||||||| ||||| ||| ||| |||||| ||| |||||| CAGTTGAACA AGGTAACTAT TAAGAACAAG TATCCACTTC CTCGCATTGA TGACTTGTTC 241 GATCAGTTAC AAGGTGCTTG TACCTTCTCA AAAATTGATT TGAGATTTGG TTATCATCAA 43520 |||||||||| |||||||||| | |||||| || ||||| | |||||| || |||||||||| GATCAGTTAC AAGGTGCTTG TGTCTTCTCT AAGATTGACT TGAGATCCGG TTATCATCAA 301 TTGAAAATAG GGGCAGCAGA TGTGCCAAAG ACTGCTTTTC AAACCAGGTA TGAACATTAT 43460 ||||||||| ||||| | || |||||||||| ||||||||| ||||||||| || ||||| TTGAAAATAC GGGCAACGGA TGTGCCAAAG ACTGCTTTTA GAACCAGGTA TGGGCATTAC 361 GAATTCTTAG TAATGTCTTT TGGGCTTACG AATGCCCCTT CTTCTTTCAT GAGCCTGATG 43400 ||||| ||| | |||||||| ||| |||||| ||||||||| || | ||||| |||| ||||| GAATTTGTAG TGATGTCTTT TGGTCTTACG AATGCCCCTG CTGCGTTCAT GAGCTTGATG 421 AACGGGATTT TTAAGCCATA TCTGGATCTC GTTGTTATTG TATTTATTGA TGATATACTG 43340 ||||||| || |||||||||| | |||||||| |||| || | |||||||| |||||||||| AACGGGA-TT TTAAGCCATA TTTGGATCTC TTTGTCATCA TGTTTATTGA TGATATACTG 480 ATATACTCAA AGAGCAGGAA AGAACATGAG GAGCATTTGA AAATTGTATT GGAATTGTTG 43280 |||||||| | | || | ||| ||||||||| |||||||||| ||||||||| ||| ||||| ATATACTCTA ATAGTAAGAA GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG 540 AGGGAGAAAA GGCTTTATGC CAAATTCTTT AAGTGTGAGT TTTGGCTAGA TTCAGTGTCC 43220 |||||||||| ||||||||| ||| |||| | |||||||||| ||||| |||| | |||||||| AGGGAGAAAA AGCTTTATGC CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC 600 TTCTTGGGGC ACGTGGTTTC TAAGGATGGA GTGATGGTGG ATCCATCTAA GATTGAAGCA 43160 |||||||||| |||||||||| |||||||||| |||||||||| |||| | ||| |||||| || TTCTTGGGGC ACGTGGTTTC TAAGGATGGA GTGATGGTGG ATCCTTGTAA GATTGAGACA 660 GTGAAGAGTT GGGTAACAC 43141 ||||||| || |||| | || GTGAAGAATT GGGTGAGAC 679 hqPGS_C08HBa0027D09.1-_SGN-E368762- (43819 43141) ******************************************************************************** EST sequence 142 -strand 358 n (File: SGN-E240817-) 1 TGTGCCAAAG ACTGCTTTTA GAACCAGGTA TGGGCATTAC GAATTTGTAG TGATGTCTTT 61 TGGTCTTACG AATGCCCCTG CTGCGTTCAT GAGCTTGATG AACGGGATTT TAAGCCATAT 121 TTGGATCTCT GCGTCATCAT GTTCATTGAT GATATACTGA TATCCTCTAA TAGTAAGAAG 181 GAACATGAGG AGCATTTGAG AATTGTATTA GAAATGTTGA GGGAGAAAAA GCTTTATGCC 241 AAGTTCTCTA AGTGTGAGTT TTGGATAGAT GCAGTGTCCT TCTTGGGGCA CGTGGTTTCT 301 AAGGATGGAG TGATGGTGGA TCCTGGTAAG ATTGAGACAG TGAAGAAATG GGTGAGAC Predicted gene structure (within gDNA segment 45404 to 42226): Exon 1 43499 43141 ( 359 n); cDNA 1 358 ( 358 n); score: 0.872 MATCH C08HBa0027D09.1- SGN-E240817- 0.872 359 1.003 C PGS_C08HBa0027D09.1-_SGN-E240817- (43499 43141) Alignment (genomic DNA sequence = upper lines): TGTGCCAAAG ACTGCTTTTC AAACCAGGTA TGAACATTAT GAATTCTTAG TAATGTCTTT 43440 |||||||||| ||||||||| ||||||||| || ||||| ||||| ||| | |||||||| TGTGCCAAAG ACTGCTTTTA GAACCAGGTA TGGGCATTAC GAATTTGTAG TGATGTCTTT 60 TGGGCTTACG AATGCCCCTT CTTCTTTCAT GAGCCTGATG AACGGGATTT TTAAGCCATA 43380 ||| |||||| ||||||||| || | ||||| |||| ||||| ||||||| || |||||||||| TGGTCTTACG AATGCCCCTG CTGCGTTCAT GAGCTTGATG AACGGGA-TT TTAAGCCATA 119 TCTGGATCTC GTTGTTATTG TATTTATTGA TGATATACTG ATATACTCAA AGAGCAGGAA 43320 | |||||||| || || | || ||||| |||||||||| |||| ||| | | || | ||| TTTGGATCTC TGCGTCATCA TGTTCATTGA TGATATACTG ATATCCTCTA ATAGTAAGAA 179 AGAACATGAG GAGCATTTGA AAATTGTATT GGAATTGTTG AGGGAGAAAA GGCTTTATGC 43260 ||||||||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||||||| GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG AGGGAGAAAA AGCTTTATGC 239 CAAATTCTTT AAGTGTGAGT TTTGGCTAGA TTCAGTGTCC TTCTTGGGGC ACGTGGTTTC 43200 ||| |||| | |||||||||| ||||| |||| | |||||||| |||||||||| |||||||||| CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC TTCTTGGGGC ACGTGGTTTC 299 TAAGGATGGA GTGATGGTGG ATCCATCTAA GATTGAAGCA GTGAAGAGTT GGGTAACAC 43141 |||||||||| |||||||||| |||| ||| |||||| || ||||||| | |||| | || TAAGGATGGA GTGATGGTGG ATCCTGGTAA GATTGAGACA GTGAAGAAAT GGGTGAGAC 358 hqPGS_C08HBa0027D09.1-_SGN-E240817- (43499 43141) ******************************************************************************** EST sequence 12 -strand 737 n (File: SGN-E578078-) 1 GCAATCGCAA ATCCTTCAGG AATTTTCATG TATATCTCAT ATTTAAATGA TCCATAAAGG 61 TAGGTTGTAA CCACATCCAT CAAATGCATT TCAAGTTGCT CATGGACTGT GAAACTAATG 121 AGATAAACCA ATGTTATTGC ATCCATAACG GGTGAGTATG TCTCTTCATA TTCGACGCCA 181 GGCCTTTGAG AAAATATTTT TTGTTACAAC CCCGGTAGGT GACTCCATTG TTGCTAGAAG 241 AGTCTTTAGG AGTTATCCTA TATATTTCCC CAATAGAGTT ACTTGGGTGG ATTTGGTGGA 301 ATTCGATATG GTCGATTTTT ATTTTATCTT GGGAATGGAT TGGTTGCATG CTTGTTATGC 361 TTCCATAGAC TGTCGAACAA GAGTTGTTAA ATTCAACTTT CCTAATGAAC CTGTCTTAGA 421 GTGGAATGGC AGTAATTTAA TTCCTAAAGG TCATATCATC TCTTGTTTAA AATATTGCAA 481 AATAATCTCA AAAGTGTGAA TTTACCATAT TGTAAGAGTC AAAGATCTTG AGTCCGATAT 541 TCCTCCAATT GAGTCAATCA CCATAGTGAG AGAATTTTCG AAAATATCTT CCTCACATTG 601 ATGATTTGTT CGATCAGTTA CAAGGTGCTT GTACCTTCTC AAAAATCGAC TTGAGATCTG 661 GTTATCATCA ATTGAAAATA CGAGCAGCAG ATGTGCCCAA GACTGCTTTT CGGACCAGGT 721 ATGAGCATTA TGAGTTC Predicted gene structure (within gDNA segment 50092 to 42341): Exon 1 46068 46061 ( 8 n); cDNA 196 203 ( 8 n); score: 0.875 Intron 1 46060 44272 (1789 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 2 44271 43892 ( 380 n); cDNA 204 582 ( 379 n); score: 0.532 Intron 2 43891 43610 ( 282 n); Pd: 0.000 (s: 0.62), Pa: 0.000 (s: 0.92) Exon 3 43609 43454 ( 156 n); cDNA 583 737 ( 155 n); score: 0.910 MATCH C08HBa0027D09.1- SGN-E578078- 0.642 544 0.738 C PGS_C08HBa0027D09.1-_SGN-E578078- (46068 46061,44271 43892,43609 43454) Alignment (genomic DNA sequence = upper lines): ATTTGTTGGT TCGCTCACCT AGGAGAATAA GTGTGGGTGC CACTCGCGAC TCGTTTTGGG 46009 |||| ||| ATTTTTTG.. .......... .......... .......... .......... .......... 203 TCGTGACAAA CTTGGTATCA GAGCGTTCTT TCATGCTATT ACTTGGATCC AATTGGTATC 45949 .......... .......... .......... .......... .......... .......... 203 TAGGTGATAC AAATTGGTAT CTGATATCCT CACTCTATTT CGCAGATGGT TAGAACTAGA 45889 .......... .......... .......... .......... .......... .......... 203 GCAACAACTG TGCCAACACC AACACCGGCA AGACAGGGTG CGTCTAAGCC AACCATTGGG 45829 .......... .......... .......... .......... .......... .......... 203 GCTGTAGCTC AAGGAGGAGC AGTGGCAAGA GGCCATGGTA GAGGTCGCAG GGGGACGTCC 45769 .......... .......... .......... .......... .......... .......... 203 TCTAGAGGTA GAGGACAAAC ACCTGGTCCA GCCAGTAATA GGGCGGTGAC TCCTCCACCG 45709 .......... .......... .......... .......... .......... .......... 203 ACTGATGAGG TACTAAGAGA GGTTGAGGAA GGGGAAAACG AGTAGGTTCA AGATGAGGAA 45649 .......... .......... .......... .......... .......... .......... 203 TTACCATCCC AGCCTACCTC AGAGATGATT AACCAGGTTC TTACTTATCT TAGCGGGTTA 45589 .......... .......... .......... .......... .......... .......... 203 TCTGATCAGG GACAAACACC TCCAGTGTTT TCTACACCAG CACCTCAGGT TCCGGGAGTA 45529 .......... .......... .......... .......... .......... .......... 203 CAACATGCAG CTGCTGTGGC TCCCCACATG GATTCCTCAT TGGAAGTAGG CACGTTTCCT 45469 .......... .......... .......... .......... .......... .......... 203 CGATTGACTA CAGGGTCTAT AGTGACAAGT GTTCAGCATG AACTTTTCAC TAAATTCTTA 45409 .......... .......... .......... .......... .......... .......... 203 AAATTGAAAC ATCCAGTCTT CAAGGGTGCT GAATCTGAGG ATTCCTATGA TTTTCTGGTA 45349 .......... .......... .......... .......... .......... .......... 203 TATTGTCATG AGCTGCTAGA TAAGATGGAC ATAGTAGAAC GATTCGGTGT TGAGTTTGTG 45289 .......... .......... .......... .......... .......... .......... 203 ACCTACCAGT TTCAGGGAAT GCCAAAATGT GGTGGTGGTC GTATGTTGAG TGTCAACCAG 45229 .......... .......... .......... .......... .......... .......... 203 CACAGGCATC ACCTATGACT TGGGCATCAT TCTCTAGCTT ATTTATGGAG AAGTATATAC 45169 .......... .......... .......... .......... .......... .......... 203 CTCGGACTTT GAGGGACAAG AGGAGAGATG AGTTCCTGAG CTTAGAGCAA GGCAGGATGT 45109 .......... .......... .......... .......... .......... .......... 203 ATGTTACTGC TTATGAGGCT AAATTTCGTG CACTATCCAG GTATGCCACC CAGCTTTGCT 45049 .......... .......... .......... .......... .......... .......... 203 TCAGTCCACA AGAGCGGATT TGCCGTTTTG TGAAAGGATT GAGGTCAGAT TTGCAGATCC 44989 .......... .......... .......... .......... .......... .......... 203 CAGCCTTACA GGTAGCTGTT GCAGTAAAAT CCTTTCAGGA AGTGGTTGAT TTTGTGATAG 44929 .......... .......... .......... .......... .......... .......... 203 AAGTGGAGGG GGTGAAGCCA GACGACTTCA CCATGGCGTC GACATCTAAG AAGTTCCGTA 44869 .......... .......... .......... .......... .......... .......... 203 AGGGAGGTGA ATTTAGTGGT TCTTACTCCA GAGGGCAGAG TTCAGGAGGT TACCCAGCCC 44809 .......... .......... .......... .......... .......... .......... 203 GACCTATTCA GTCTTCACTG CAGGCTGTAG ATGGGGGTCC ATCGCAGACC AGTCAACATT 44749 .......... .......... .......... .......... .......... .......... 203 TCTCTGAGTT TGGAGGTTAT CCCCAGACTT CGTCATTCTC ACAGAGACCT ATGCTTGACT 44689 .......... .......... .......... .......... .......... .......... 203 CCAAAAATTG TTATGGATGT GGAGAGACTG GACATATTAG GAGGTATTGT CCAAAACAGA 44629 .......... .......... .......... .......... .......... .......... 203 GTTACAGACC CCCAATAGTT AGAGGTAGAG GTGGTCATGG GAGAGGCCGC CATTCTGGAG 44569 .......... .......... .......... .......... .......... .......... 203 GATGTGGTGT CCAAGGTAAT GGTGGTCACC AAATCAGCCG GGGTGGCGGG CAAGCTGGAG 44509 .......... .......... .......... .......... .......... .......... 203 CTACTACAGC GCAACATGGT AGGGGCAACG GGCAGACAGG TGATAGGGCC CATTGTTATG 44449 .......... .......... .......... .......... .......... .......... 203 CTTTCCCCGG GAGGTCTGAA GCAGAGACAT CTGATGTTGT TATCACAGGT AATCTTTTGG 44389 .......... .......... .......... .......... .......... .......... 203 TCTGTGATTG CATGGCTTCT GTATTATTTG ATCTTGGATC CACATTTTCA TATGTATCTT 44329 .......... .......... .......... .......... .......... .......... 203 CCTCATTTGC TACTGATCTT GATTTACATT ATGATTTGCT TGACATGCCT ATTCGTGTCT 44269 | .......... .......... .......... .......... .......... .......TTA 206 CTACTCCTGT GGGTGAGTCT GTGATAGCTG AGAAG-GTGT ATAGGTCTTG TCTTGTGACT 44210 | || || || ||||| || | | ||| ||||| || | |||| || || | | | CAACCCCGGT AGGTGACTCC ATTGTTGCT- AGAAGAGTCT TTAGGAGTTA TCCTATATAT 265 TTTGTGGGGA GCAATACTCA TGTAGATTTG ATTATTCTAG AGATGGTTGA TTTCGATGTA 44150 || | | |||| || |||||| | | | | ||||| || ||| || | TTCCCCAATA GAGTTACTTG GGTGGATTTG GTGGAATTCG ATATGGTCGA TTTTTATTTT 325 ATTCTGGGTA TGACTTGGCT TTCTCCAAAT TTTGCAATCT TAGATTATAA TGCTAAAACT 44090 || |||| | || |||| | | | | | ||| | |||| | | | | | | ATCTTGGGAA TGGATTGGTT GCATGCTTGT TATGCTTCCA TAGACTGTCG AACAAGAGTT 385 GTGACATTGG CCAAGCCTGG GACAGATCCG TTAGTGTGGG A-GGTTG-AC TATATTTCCA 44032 || | ||| | ||| | | |||| |||| | || | | | || || | GTTAAATTCA ACTTTCCTAA TGAACCTGTC TTAGAGTGGA ATGGCAGTAA TTTAATT-C- 443 CTCCAGTTCG TATTATCTCT TTTCTTCGTG CTAAGAGGAT AAT-TAGTAA GGGTTGTTTA 43973 || || || ||| |||||| | | | | | || ||| | || | || || CTAAAGGTCA TATCATCTCT TGTTTAAAAT ATTGCAAAAT AATCTCAAAA GTGTGAATTT 503 GCTTTCTTGG CCCATCTTAG GGATGATACT TCCAAAGTAC CTTCGATTGA GTCTGTTTCG 43913 | | ||| | | | ||| | ||| | | | || | ||||| ||| | | ACCATATTGT AAGA-GTCAA AGATCTTGAG TCCGATATTC CTCCAATTGA GTCAATCACC 562 ATAGTCTGTG AGTTCCTGGA TGTGTTTCCT GCAGCTCTTC CTGGTATGCC ACCAGATAGG 43853 ||||| | | | || | || ATAGTGAGAG AATT-TTCGA A......... .......... .......... .......... 582 GATATTGAGT TTTGTATTAA TCTGGAGCCG GGTACTCGCC CCATTTCCAT ACCCCCTTAT 43793 .......... .......... .......... .......... .......... .......... 582 AGAATGGCTC CAGCTGAGTT AAGGGAGTTA AAGACCCAAC TTCAAGAATT GTTAGGAAAA 43733 .......... .......... .......... .......... .......... .......... 582 GGCTTTATTA GACCAAGTGC ATCCCCTTGG GGTGCTCCTA TTTTATTTGT GAAGAAGAAG 43673 .......... .......... .......... .......... .......... .......... 582 GATGGAAGTT TTTGGATGTG CATAGACTAC AGGCAACTGA ATAAGGTAAA TATTAAGAAC 43613 .......... .......... .......... .......... .......... .......... 582 AAGTATCCTA TTCCTCACAT TGATGATTTG TTCGATCAGT TACAAGGTGC TTGTACCTTC 43553 || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AAT-ATC TTCCTCACAT TGATGATTTG TTCGATCAGT TACAAGGTGC TTGTACCTTC 638 TCAAAAATTG ATTTGAGATT TGGTTATCAT CAATTGAAAA TAGGGGCAGC AGATGTGCCA 43493 |||||||| | | ||||||| |||||||||| |||||||||| || | ||||| ||||||||| TCAAAAATCG ACTTGAGATC TGGTTATCAT CAATTGAAAA TACGAGCAGC AGATGTGCCC 698 AAGACTGCTT TTCAAACCAG GTATGAACAT TATGAATTC 43454 |||||||||| ||| ||||| |||||| ||| ||||| ||| AAGACTGCTT TTCGGACCAG GTATGAGCAT TATGAGTTC 737 hqPGS_C08HBa0027D09.1-_SGN-E578078- (43609 43454) ******************************************************************************** EST sequence 63 -strand 559 n (File: SGN-E244046-) 1 GGTGAGTTTA ATGGTGCTTA CACTAGAGGA CAGGGTTCGG GAAGTTACTC AGTCCGACCA 61 ATTCAGTCTT CACTACAGAC TGTAGTTGGG GGTCCACCTT CGACCGGTCA ACACTTCTCT 121 GAGAGACTTA TGCATGAACC CAGAGAGTGC TATGGGTGTG GGGAGATTGG ACATATTAAG 181 AGATATTGTC CAAAACAGAG TTACAGACCT CCAAAGGTTA GAGGTAGAGG TGGTCATGGC 241 AGAGTCCGTT ATTCTGGAGG ACGTGGCGGT CGAGGAAATG GTGGTCACCA AAACGGCCGA 301 GGTGATGGGC AAACTGGAGC CACTACATCA CAACATGGTA GGGGCAACAG ACATAAGAAT 361 GATAGGGCCC ATTGTTACGC TTTCCCTGGG CGGTCTGAAG CGGAGGAATC TGATGTTGTC 421 ATCACAGGTA ATCTTTTGGT TTGTGATTGC ATGGCTTCTG TATTGTTTGA TCCTGGATCC 481 ACATTTTCTT ATGTATCTTC CTCATTTGCT AATGGTCTAA CTTTACATTG TGAATTACTT 541 GATATGCCTA TTCGTGTTT Predicted gene structure (within gDNA segment 47084 to 42814): Exon 1 44863 44742 ( 122 n); cDNA 1 122 ( 122 n); score: 0.828 Intron 1 44741 44706 ( 36 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.78) Exon 2 44705 44271 ( 435 n); cDNA 123 557 ( 435 n); score: 0.857 MATCH C08HBa0027D09.1- SGN-E244046- 0.851 557 0.996 C PGS_C08HBa0027D09.1-_SGN-E244046- (44863 44742,44705 44271) Alignment (genomic DNA sequence = upper lines): GGTGAATTTA GTGGTTCTTA CTCCAGAGGG CAGAGTTCAG GAGGTTACCC AGCCCGACCT 44804 ||||| |||| |||| |||| | | ||||| ||| |||| | || ||||| | || |||||| GGTGAGTTTA ATGGTGCTTA CACTAGAGGA CAGGGTTCGG GAAGTTACTC AGTCCGACCA 60 ATTCAGTCTT CACTGCAGGC TGTAGATGGG GGTCCATCGC AGACCAGTCA ACATTTCTCT 44744 |||||||||| |||| ||| | ||||| |||| |||||| | |||| |||| ||| |||||| ATTCAGTCTT CACTACAGAC TGTAGTTGGG GGTCCACCTT CGACCGGTCA ACACTTCTCT 120 GAGTTTGGAG GTTATCCCCA GACTTCGTCA TTCTCACAGA GACCTATGCT TGACTCCAAA 44684 || || ||| ||||| ||| ||| | GA........ .......... .......... ........GA GACTTATGCA TGAACCCAGA 144 AATTGTTATG GATGTGGAGA GACTGGACAT ATTAGGAGGT ATTGTCCAAA ACAGAGTTAC 44624 | || |||| | ||||| || || ||||||| |||| ||| | |||||||||| |||||||||| GAGTGCTATG GGTGTGGGGA GATTGGACAT ATTAAGAGAT ATTGTCCAAA ACAGAGTTAC 204 AGACCCCCAA TAGTTAGAGG TAGAGGTGGT CATGGGAGAG GCCGCCATTC TGGAGGATGT 44564 ||||| |||| |||||||| |||||||||| ||||| |||| ||| |||| ||||||| || AGACCTCCAA AGGTTAGAGG TAGAGGTGGT CATGGCAGAG TCCGTTATTC TGGAGGACGT 264 GGTGTCCAAG GTAATGGTGG TCACCAAATC AGCCGGGGTG GCGGGCAAGC TGGAGCTACT 44504 || | | || | |||||||| |||||||| | |||| |||| |||||| | |||||| ||| GGCGGTCGAG GAAATGGTGG TCACCAAAAC GGCCGAGGTG ATGGGCAAAC TGGAGCCACT 324 ACAGCGCAAC ATGGTAGGGG CAACGGGCAG ACAGGTGATA GGGCCCATTG TTATGCTTTC 44444 ||| | |||| |||||||||| |||| | || | ||||| |||||||||| ||| |||||| ACATCACAAC ATGGTAGGGG CAACAGACAT AAGAATGATA GGGCCCATTG TTACGCTTTC 384 CCCGGGAGGT CTGAAGCAGA GACATCTGAT GTTGTTATCA CAGGTAATCT TTTGGTCTGT 44384 || ||| ||| ||||||| || | ||||||| ||||| |||| |||||||||| |||||| ||| CCTGGGCGGT CTGAAGCGGA GGAATCTGAT GTTGTCATCA CAGGTAATCT TTTGGTTTGT 444 GATTGCATGG CTTCTGTATT ATTTGATCTT GGATCCACAT TTTCATATGT ATCTTCCTCA 44324 |||||||||| |||||||||| ||||||| | |||||||||| |||| ||||| |||||||||| GATTGCATGG CTTCTGTATT GTTTGATCCT GGATCCACAT TTTCTTATGT ATCTTCCTCA 504 TTTGCTACTG ATCTTGATTT ACATTATGAT TTGCTTGACA TGCCTATTCG TGT 44271 ||||||| || ||| ||| ||||| ||| || ||||| | |||||||||| ||| TTTGCTAATG GTCTAACTTT ACATTGTGAA TTACTTGATA TGCCTATTCG TGT 557 hqPGS_C08HBa0027D09.1-_SGN-E244046- (44863 44742,44705 44271) ******************************************************************************** EST sequence 91 -strand 658 n (File: SGN-E355232-) 1 GTGGTAGTTG AAAAGGTACA TAGTTCTGTT TTGTNGAATT TCGTGGGGAG CAACACTTAT 61 GTAGATTTGG TTTTTTAGAA ATGGGTGACA TTGATGTAAT TCTGGGTATG ACTTGGCTTT 121 CTCCAAATTT TGCGATCTTG GATTGTAATG CTAAAACGGT GACGTTAGCC AAGCCTGGGA 181 CAGATCCGTT AGTGTGGGAG GGTGACTACA CTTCCAATCT GGTGCGTATC ATATCCTTTC 241 TTCGTGCTAA GAAAATGGTT AGTAAAGGGT GTTCAGCTTT CTTGGCACAT CTCAAGGATG 301 ACACTACTCA AGTACCCTCA ATTGAGTCGG TTTCGGTAGT CCGCGAGTTT TTGGACGTGT 361 TTCCTGCAGA TCTTCCTGGT ATGCCACCAG ATAGGGATAT TGACTTCTGT ATCGATCTTG 421 AACCAGGCAC ACGCCCCATT TCTATACCCC CTTATAGAAT GGCTCCCGCC GAATTAAGAG 481 AGTTAAAGGC TCAACTTCAA GAGTTGTTGA GCAAGGTCTT CATTAGACCA AGTGCATCTC 541 CTTGGGGTGC TCCAGTTTTA TTTGTGAAGA AGAAGGATGG AAGTTTTAGA ATGTGCATAG 601 ACTACAGACA ACTGAACAAG GTAACTATTA AGAACAAGTA TCCTCTTCCT CGCATTGA Predicted gene structure (within gDNA segment 45685 to 42864): Exon 1 44248 43590 ( 659 n); cDNA 1 658 ( 658 n); score: 0.853 MATCH C08HBa0027D09.1- SGN-E355232- 0.853 659 1.002 C PGS_C08HBa0027D09.1-_SGN-E355232- (44248 43590) Alignment (genomic DNA sequence = upper lines): GTGATAGCTG AGAAGGTGTA TAGGTCTTGT CTTGTGACTT TTGTGGGGAG CAATACTCAT 44189 ||| ||| || | ||||| | ||| ||| | | || || | |||||||| ||| ||| || GTGGTAGTTG AAAAGGTACA TAGTTCTGTT TTGTNGAATT TCGTGGGGAG CAACACTTAT 60 GTAGATTTGA TTATTCTAGA GATGGTTGAT TTCGATGTAA TTCTGGGTAT GACTTGGCTT 44129 ||||||||| || || |||| |||| ||| | ||||||| |||||||||| |||||||||| GTAGATTTGG TT-TTTTAGA AATGGGTGAC ATTGATGTAA TTCTGGGTAT GACTTGGCTT 119 TCTCCAAATT TTGCAATCTT AGATTATAAT GCTAAAACTG TGACATTGGC CAAGCCTGGG 44069 |||||||||| |||| ||||| |||| |||| |||||||| | |||| || || |||||||||| TCTCCAAATT TTGCGATCTT GGATTGTAAT GCTAAAACGG TGACGTTAGC CAAGCCTGGG 179 ACAGATCCGT TAGTGTGGGA GGTTGACTAT ATTTCCACTC CAGTTCGTAT TATCTCTTTT 44009 |||||||||| |||||||||| || |||||| | ||||| || || ||||| || || ||| ACAGATCCGT TAGTGTGGGA GGGTGACTAC ACTTCCAATC TGGTGCGTAT CATATCCTTT 239 CTTCGTGCTA AGAGGATAAT TAGTAAGGGT TGTTTAGCTT TCTTGGCCCA TCTTAGGGAT 43949 |||||||||| ||| || | |||||| || |||| ||||| ||||||| || ||| | |||| CTTCGTGCTA AGAAAATGGT TAGTAAAGGG TGTTCAGCTT TCTTGGCACA TCTCAAGGAT 299 GATACTTCCA AAGTACCTTC GATTGAGTCT GTTTCGATAG TCTGTGAGTT CCTGGATGTG 43889 || ||| | ||||||| || |||||||| |||||| ||| || | ||||| |||| ||| GACACTACTC AAGTACCCTC AATTGAGTCG GTTTCGGTAG TCCGCGAGTT TTTGGACGTG 359 TTTCCTGCAG CTCTTCCTGG TATGCCACCA GATAGGGATA TTGAGTTTTG TATTAATCTG 43829 |||||||||| ||||||||| |||||||||| |||||||||| |||| || || ||| |||| TTTCCTGCAG ATCTTCCTGG TATGCCACCA GATAGGGATA TTGACTTCTG TATCGATCTT 419 GAGCCGGGTA CTCGCCCCAT TTCCATACCC CCTTATAGAA TGGCTCCAGC TGAGTTAAGG 43769 || || || | | |||||||| ||| |||||| |||||||||| ||||||| || || ||||| GAACCAGGCA CACGCCCCAT TTCTATACCC CCTTATAGAA TGGCTCCCGC CGAATTAAGA 479 GAGTTAAAGA CCCAACTTCA AGAATTGTTA GGAAAAGGCT TTATTAGACC AAGTGCATCC 43709 ||||||||| | |||||||| ||| ||||| | || | || | |||||||| ||||||||| GAGTTAAAGG CTCAACTTCA AGAGTTGTTG AGCAAGGTCT TCATTAGACC AAGTGCATCT 539 CCTTGGGGTG CTCCTATTTT ATTTGTGAAG AAGAAGGATG GAAGTTTTTG GATGTGCATA 43649 |||||||||| |||| |||| |||||||||| |||||||||| |||||||| | ||||||||| CCTTGGGGTG CTCCAGTTTT ATTTGTGAAG AAGAAGGATG GAAGTTTTAG AATGTGCATA 599 GACTACAGGC AACTGAATAA GGTAAATATT AAGAACAAGT ATCCTATTCC TCACATTGA 43590 |||||||| | ||||||| || ||||| |||| |||||||||| ||||| |||| || |||||| GACTACAGAC AACTGAACAA GGTAACTATT AAGAACAAGT ATCCTCTTCC TCGCATTGA 658 hqPGS_C08HBa0027D09.1-_SGN-E355232- (44248 43590) ******************************************************************************** EST sequence 98 -strand 761 n (File: SGN-E355244-) 1 ATTAGATGCT GTCATCACAG GTAATCTTTC GATTGTGATT GCATGGCTTC TGTATTGTTG 61 ATCCTGGGAT CCACGTTTTC TANTGTATCT TCCTCATTTG CTAACGGTCT AAATTTACAT 121 TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG TGGGTGAGTC TGTGGTAGTT 181 GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA GCAACACTTA TGTAGATTTG 241 GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA TGACTTGGCT TTCTCCGCAA 301 TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG CCAAGCCTGG GACAGATCCG 361 TTAGTGTGGG AGGGTGACTA CACTTCCAAT CCGGTGTGCA TCATCTCCTT TCTTCGTGCT 421 AAGAAAATGG TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC ATCTCAAGGA TGACACTACC 481 CAAGTACCTT CGATTGAGTC GGTTTTTATA GTCTGTGAGT TTTTGGATGT GTTCCCTGCA 541 GATCTTCCTG GTATGCCACC AGATAGGGAT ATTGACTTCT GTATCGATCT TGAACCGGGC 601 ACACGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG TAGAGTTAAG AGAGTTAAAG 661 GCCCAACTTC AAGAGTTGTT GAGCAAAGGT TTCATTAGAC CAAGTGCATC TCCTTGGGGT 721 GCTCCGATTT TGTTTGTGAA GAAGAAGGAT GGGAGTTTCC G Predicted gene structure (within gDNA segment 47405 to 41385): Exon 1 44420 43662 ( 759 n); cDNA 1 758 ( 758 n); score: 0.863 MATCH C08HBa0027D09.1- SGN-E355244- 0.863 759 0.997 C PGS_C08HBa0027D09.1-_SGN-E355244- (44420 43662) Alignment (genomic DNA sequence = upper lines): ATCTGATGTT GTTATCACAG GTAATCTTTT GGTCTGTGAT TGCATGGCTT CTGTATTATT 44361 || |||| | || ||||||| ||||||||| | | |||||| |||||||||| ||||||| || ATTAGATGCT GTCATCACAG GTAATCTTTC GAT-TGTGAT TGCATGGCTT CTGTATTGTT 59 TGATCTTGGA TCCACATTTT CATATGTATC TTCCTCATTT GCTACTGATC TTGATTTACA 44301 || ||| ||||| |||| | |||||| |||||||||| |||| | || | ||||||| GATCCTGGGA TCCACGTTTT CTANTGTATC TTCCTCATTT GCTAACGGTC TAAATTTACA 119 TTATGATTTG CTTGACATGC CTATTCGTGT CTCTACTCCT GTGGGTGAGT CTGTGATAGC 44241 || ||| || ||||| |||| |||||||||| |||||||| |||||||||| ||||| ||| TTGTGAATTA CTTGATATGC CTATTCGTGT TTCTACTCCG GTGGGTGAGT CTGTGGTAGT 179 TGAGAAGGTG TATAGGTCTT GTCTTGTGAC TTTTGTGGGG AGCAATACTC ATGTAGATTT 44181 ||| ||||| |||||||||| || | |||| ||||||||| ||||| ||| |||||||||| TGAAAAGGTA TATAGGTCTT GTTTGGTGAA CTTTGTGGGG AGCAACACTT ATGTAGATTT 239 GATTATTCTA GAGATGGTTG ATTTCGATGT AATTCTGGGT ATGACTTGGC TTTCTCCAAA 44121 | |||| || || ||||||| |||| ||||| |||||||||| |||||||||| ||||||| | GGTTATCTTA GAAATGGTTG ATTTTGATGT AATTCTGGGT ATGACTTGGC TTTCTCCGCA 299 TTTTGCAATC TTAGATTATA ATGCTAAAAC TGTGACATTG GCCAAGCCTG GGACAGATCC 44061 ||||| ||| || |||| || |||||||||| |||||||| |||||||||| |||||||||| ATTTGCGATC TTGGATTGTA ATGCTAAAAC GGTGACATTA GCCAAGCCTG GGACAGATCC 359 GTTAGTGTGG GAGGTTGACT ATATTTCCAC TCCAGTTCGT ATTATCTCTT TTCTTCGTGC 44001 |||||||||| |||| ||||| | | ||||| ||| || | || ||||| | |||||||||| GTTAGTGTGG GAGGGTGACT ACACTTCCAA TCCGGTGTGC ATCATCTCCT TTCTTCGTGC 419 TAAGAGGATA ATTAGTAAGG GTTGTTTAGC TTTCTTGGCC CATCTTAGGG ATGATACTTC 43941 ||||| || ||||||| | | |||||||| ||||||||| ||||| | || |||| ||| | TAAGAAAATG GTTAGTAAAG GGTGTTTAGC TTTCTTGGCA CATCTCAAGG ATGACACTAC 479 CAAAGTACCT TCGATTGAGT CTGTTTCGAT AGTCTGTGAG TTCCTGGATG TGTTTCCTGC 43881 | |||||||| |||||||||| | |||| || |||||||||| || |||||| |||| ||||| CCAAGTACCT TCGATTGAGT CGGTTTTTAT AGTCTGTGAG TTTTTGGATG TGTTCCCTGC 539 AGCTCTTCCT GGTATGCCAC CAGATAGGGA TATTGAGTTT TGTATTAATC TGGAGCCGGG 43821 || ||||||| |||||||||| |||||||||| |||||| || ||||| ||| | || ||||| AGATCTTCCT GGTATGCCAC CAGATAGGGA TATTGACTTC TGTATCGATC TTGAACCGGG 599 TACTCGCCCC ATTTCCATAC CCCCTTATAG AATGGCTCCA GCTGAGTTAA GGGAGTTAAA 43761 || |||||| ||||| |||| |||||||||| ||||||||| | ||||||| | |||||||| CACACGCCCC ATTTCTATAC CCCCTTATAG AATGGCTCCC GTAGAGTTAA GAGAGTTAAA 659 GACCCAACTT CAAGAATTGT TAGGAAAAGG CTTTATTAGA CCAAGTGCAT CCCCTTGGGG 43701 | |||||||| ||||| |||| | | ||||| || |||||| |||||||||| | |||||||| GGCCCAACTT CAAGAGTTGT TGAGCAAAGG TTTCATTAGA CCAAGTGCAT CTCCTTGGGG 719 TGCTCCTATT TTATTTGTGA AGAAGAAGGA TGGAAGTTT 43662 |||||| ||| || ||||||| |||||||||| ||| ||||| TGCTCCGATT TTGTTTGTGA AGAAGAAGGA TGGGAGTTT 758 hqPGS_C08HBa0027D09.1-_SGN-E355244- (44420 43662) ******************************************************************************** EST sequence 61 -strand 661 n (File: SGN-E351414-) 1 CTAACGGTCT AAATTTACAT TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG 61 TGGGTGAGTC TGTGGTAGTT GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA 121 GCAACACTTA TGTAGATTTG GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA 181 TGACTTGGCT TTCTCCGCAA TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG 241 CCAAGCCTGG GACAGATCCG TTAGTGTGGG AGGGTGACTA CACTTCCAAT CCGGTGTGCA 301 TCATCTCCTT TCTTCGTGCT AAGAAAATGG TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC 361 ATCTCAAGGA TGACACTACC CAAGTACCTT CGATTGAGTC GGTTTTTATA GTCTGTGAGT 421 TTTTGGATGT GTTCCCTGCA GATCTTCCTG GTATGCCACC AGATAGGGAT ATTGACTTCT 481 GTATCGATCT TGAACCGGGC ACACGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG 541 TAGAGTTAAG AGAGTTAAAG GCCCAACTTC AAGAGTTGTT GAGCAAAGGT TTCATTAGAC 601 CAAGTGCATC TCCTTGGGGT GCTCCGATTT TGTTTGTGAA GAAGAAGGAT GGGAGTTTCC 661 G Predicted gene structure (within gDNA segment 46405 to 41385): Exon 1 44319 43662 ( 658 n); cDNA 1 658 ( 658 n); score: 0.868 MATCH C08HBa0027D09.1- SGN-E351414- 0.868 658 0.995 C PGS_C08HBa0027D09.1-_SGN-E351414- (44319 43662) Alignment (genomic DNA sequence = upper lines): CTACTGATCT TGATTTACAT TATGATTTGC TTGACATGCC TATTCGTGTC TCTACTCCTG 44260 ||| | ||| |||||||| | ||| || | |||| ||||| ||||||||| |||||||| | CTAACGGTCT AAATTTACAT TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG 60 TGGGTGAGTC TGTGATAGCT GAGAAGGTGT ATAGGTCTTG TCTTGTGACT TTTGTGGGGA 44200 |||||||||| |||| ||| | || ||||| | |||||||||| | | |||| |||||||||| TGGGTGAGTC TGTGGTAGTT GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA 120 GCAATACTCA TGTAGATTTG ATTATTCTAG AGATGGTTGA TTTCGATGTA ATTCTGGGTA 44140 |||| ||| | |||||||||| |||| ||| | |||||||| ||| |||||| |||||||||| GCAACACTTA TGTAGATTTG GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA 180 TGACTTGGCT TTCTCCAAAT TTTGCAATCT TAGATTATAA TGCTAAAACT GTGACATTGG 44080 |||||||||| |||||| | ||||| |||| | |||| ||| ||||||||| |||||||| | TGACTTGGCT TTCTCCGCAA TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG 240 CCAAGCCTGG GACAGATCCG TTAGTGTGGG AGGTTGACTA TATTTCCACT CCAGTTCGTA 44020 |||||||||| |||||||||| |||||||||| ||| |||||| | ||||| | || || | | CCAAGCCTGG GACAGATCCG TTAGTGTGGG AGGGTGACTA CACTTCCAAT CCGGTGTGCA 300 TTATCTCTTT TCTTCGTGCT AAGAGGATAA TTAGTAAGGG TTGTTTAGCT TTCTTGGCCC 43960 | ||||| || |||||||||| |||| || ||||||| || ||||||||| |||||||| | TCATCTCCTT TCTTCGTGCT AAGAAAATGG TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC 360 ATCTTAGGGA TGATACTTCC AAAGTACCTT CGATTGAGTC TGTTTCGATA GTCTGTGAGT 43900 |||| | ||| ||| ||| || ||||||||| |||||||||| |||| ||| |||||||||| ATCTCAAGGA TGACACTACC CAAGTACCTT CGATTGAGTC GGTTTTTATA GTCTGTGAGT 420 TCCTGGATGT GTTTCCTGCA GCTCTTCCTG GTATGCCACC AGATAGGGAT ATTGAGTTTT 43840 | ||||||| ||| |||||| | |||||||| |||||||||| |||||||||| ||||| || | TTTTGGATGT GTTCCCTGCA GATCTTCCTG GTATGCCACC AGATAGGGAT ATTGACTTCT 480 GTATTAATCT GGAGCCGGGT ACTCGCCCCA TTTCCATACC CCCTTATAGA ATGGCTCCAG 43780 |||| |||| || ||||| || ||||||| |||| ||||| |||||||||| |||||||| | GTATCGATCT TGAACCGGGC ACACGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG 540 CTGAGTTAAG GGAGTTAAAG ACCCAACTTC AAGAATTGTT AGGAAAAGGC TTTATTAGAC 43720 |||||||| ||||||||| ||||||||| |||| ||||| | ||||| || ||||||| TAGAGTTAAG AGAGTTAAAG GCCCAACTTC AAGAGTTGTT GAGCAAAGGT TTCATTAGAC 600 CAAGTGCATC CCCTTGGGGT GCTCCTATTT TATTTGTGAA GAAGAAGGAT GGAAGTTT 43662 |||||||||| ||||||||| ||||| |||| | |||||||| |||||||||| || ||||| CAAGTGCATC TCCTTGGGGT GCTCCGATTT TGTTTGTGAA GAAGAAGGAT GGGAGTTT 658 hqPGS_C08HBa0027D09.1-_SGN-E351414- (44319 43662) ******************************************************************************** EST sequence 255 +strand 659 n (File: SGN-E352117+) 1 TTTGATCCTG CCTCCACATT TTCATATGTA TCTTCCTCAT TTGCTACTGT TCTTAATTTA 61 CATAGTGAAT CGCTTGACAT ACCTATTCGT GTTCTACTCC GGTGGGTGAG TCTGTGATTG 121 TTGAAAAGGT GTATAGGTCT TGTCTTGTGA CATTTGTGGG AGCAATACTC ATGTAGACTT 181 GGTTATCCTA TAAATGGTTG ACTTCGATGT AATTCTGGGT ATGACTTGGC TGTCTCCAAA 241 TTTTGCAATC TTGGATTGTA ATGCTAAAAC TGTAACGTTG GCCAAGCCTG AGATAGATGC 301 GTTAGTGTGG GAGGGTGACT ACACTTCCAC TCCAGTTCGT ATCATCTCCT TTCTTTGTGC 361 TAAGAGAATG GTTAGTAAAG GGTGTTTAGC TTTCTTGGCA CACCTCAGGG ATGATACTAC 421 CCAAGTACCT TCAATTGAGT CAGTTTCGAT AGTCCGTGAG TTTCTGGATG TGTTTCCTGC 481 AGACCTTCCT GGTATGCCAC CGGATAGGGA TATTGACTTT TGCATTGATC TGGAGCCGGG 541 TGATCACCCC ATTTCCATAC CCCCTTATAG AATGGCTCCC GCTGAGTTGG GGGAGTTAAA 601 GGCCCAACTT CAAGAGTTGT TANGTAAGGG CTTCATTANG CCAAGTGCAT CCCCTTGGG Predicted gene structure (within gDNA segment 45070 to 42372): Exon 1 44362 43702 ( 661 n); cDNA 1 659 ( 659 n); score: 0.893 MATCH C08HBa0027D09.1- SGN-E352117+ 0.893 661 1.003 C PGS_C08HBa0027D09.1-_SGN-E352117+ (44362 43702) Alignment (genomic DNA sequence = upper lines): TTTGATCTTG GATCCACATT TTCATATGTA TCTTCCTCAT TTGCTACTGA TCTTGATTTA 44303 ||||||| || |||||||| |||||||||| |||||||||| ||||||||| |||| ||||| TTTGATCCTG CCTCCACATT TTCATATGTA TCTTCCTCAT TTGCTACTGT TCTTAATTTA 60 CATTATGATT TGCTTGACAT GCCTATTCGT GTCTCTACTC CTGTGGGTGA GTCTGTGATA 44243 ||| ||| | ||||||||| ||||||||| || ||||||| | |||||||| ||||||||| CATAGTGAAT CGCTTGACAT ACCTATTCGT GT-TCTACTC CGGTGGGTGA GTCTGTGATT 119 GCTGAGAAGG TGTATAGGTC TTGTCTTGTG ACTTTTGTGG GGAGCAATAC TCATGTAGAT 44183 | ||| |||| |||||||||| |||||||||| || ||||| | |||||||||| ||||||||| GTTGAAAAGG TGTATAGGTC TTGTCTTGTG ACATTTGT-G GGAGCAATAC TCATGTAGAC 178 TTGATTATTC TAGAGATGGT TGATTTCGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA 44123 ||| |||| | || | ||||| ||| |||||| |||||||||| |||||||||| ||| |||||| TTGGTTATCC TATAAATGGT TGACTTCGAT GTAATTCTGG GTATGACTTG GCTGTCTCCA 238 AATTTTGCAA TCTTAGATTA TAATGCTAAA ACTGTGACAT TGGCCAAGCC TGGGACAGAT 44063 |||||||||| |||| |||| |||||||||| ||||| || | |||||||||| || || |||| AATTTTGCAA TCTTGGATTG TAATGCTAAA ACTGTAACGT TGGCCAAGCC TGAGATAGAT 298 CCGTTAGTGT GGGAGGTTGA CTATATTTCC ACTCCAGTTC GTATTATCTC TTTTCTTCGT 44003 ||||||||| |||||| ||| ||| | |||| |||||||||| |||| ||||| |||||| || GCGTTAGTGT GGGAGGGTGA CTACACTTCC ACTCCAGTTC GTATCATCTC CTTTCTTTGT 358 GCTAAGAGGA TAATTAGTAA GGGTTGTTTA GCTTTCTTGG CCCATCTTAG GGATGATACT 43943 |||||||| | | ||||||| || |||||| |||||||||| | || || || |||||||||| GCTAAGAGAA TGGTTAGTAA AGGGTGTTTA GCTTTCTTGG CACACCTCAG GGATGATACT 418 TCCAAAGTAC CTTCGATTGA GTCTGTTTCG ATAGTCTGTG AGTTCCTGGA TGTGTTTCCT 43883 || |||||| |||| ||||| ||| |||||| |||||| ||| |||| ||||| |||||||||| ACCCAAGTAC CTTCAATTGA GTCAGTTTCG ATAGTCCGTG AGTTTCTGGA TGTGTTTCCT 478 GCAGCTCTTC CTGGTATGCC ACCAGATAGG GATATTGAGT TTTGTATTAA TCTGGAGCCG 43823 |||| |||| |||||||||| ||| |||||| |||||||| | |||| ||| | |||||||||| GCAGACCTTC CTGGTATGCC ACCGGATAGG GATATTGACT TTTGCATTGA TCTGGAGCCG 538 GGTACTCGCC CCATTTCCAT ACCCCCTTAT AGAATGGCTC CAGCTGAGTT AAGGGAGTTA 43763 ||| || || |||||||||| |||||||||| |||||||||| | |||||||| |||||||| GGTGATCACC CCATTTCCAT ACCCCCTTAT AGAATGGCTC CCGCTGAGTT GGGGGAGTTA 598 AAGACCCAAC TTCAAGAATT GTTAGGAAAA GGCTTTATTA GACCAAGTGC ATCCCCTTGG 43703 ||| |||||| ||||||| || |||| | || ||||| |||| |||||||| |||||||||| AAGGCCCAAC TTCAAGAGTT GTTANGTAAG GGCTTCATTA NGCCAAGTGC ATCCCCTTGG 658 G 43702 | G 659 hqPGS_C08HBa0027D09.1-_SGN-E352117+ (44362 43702) ******************************************************************************** EST sequence 101 -strand 543 n (File: SGN-E355026-) 1 GCAGAGGCGT CTGATGCTGT TATCACAGGT AATCTCTTGG TTTGTGATTG CATGGCATCT 61 GTATTATTTG ACCCTGGCTC CACGTTTTCA TATGTATCTT CATCATTTGC TAATGGTCTA 121 AAATTGCATT GTGAATTACT TGACATGCCT ATTCGTGTTT CTACTCCGGT GGGTGAGTCT 181 GTGATAGTTG AAAAGGTACA TAGGTCTTGT TTGGTGAATT TCGTGGGGAG CAACACTTAT 241 CTAGATTTGG TTACTTTAGA AATGGGTGAC TTTGATGTAA TTCTGGGTAT GACTTGGCTT 301 TCTCCCAATT TTGCGATCTT GGATTGTAAT GCTAAAACGG TGACGTTAGC CAAGCCTGGG 361 ACAGATCCGT TAGTGTGGGA GGGTGACTAC ACTTCCAATC CGGTGCGTAT TATCTCCTTT 421 CTTTGTGCTC AGAAGATGGT TAGTAAGGGT TGTCTATCCT TCTTGGCACA TCTCAAGGAT 481 GACACTATCC AAGTACCCTC AATTGAATTA GTTTTGGTAG TTTGAGAATT TTTGGATGTG 541 TTC Predicted gene structure (within gDNA segment 46280 to 41837): Exon 1 44428 43887 ( 542 n); cDNA 1 542 ( 542 n); score: 0.851 MATCH C08HBa0027D09.1- SGN-E355026- 0.851 542 0.998 C PGS_C08HBa0027D09.1-_SGN-E355026- (44428 43887) Alignment (genomic DNA sequence = upper lines): GCAGAGACAT CTGATGTTGT TATCACAGGT AATCTTTTGG TCTGTGATTG CATGGCTTCT 44369 |||||| | | |||||| ||| |||||||||| ||||| |||| | |||||||| |||||| ||| GCAGAGGCGT CTGATGCTGT TATCACAGGT AATCTCTTGG TTTGTGATTG CATGGCATCT 60 GTATTATTTG ATCTTGGATC CACATTTTCA TATGTATCTT CCTCATTTGC TACTGATCTT 44309 |||||||||| | | ||| || ||| |||||| |||||||||| | |||||||| || || ||| GTATTATTTG ACCCTGGCTC CACGTTTTCA TATGTATCTT CATCATTTGC TAATGGTCTA 120 GATTTACATT ATGATTTGCT TGACATGCCT ATTCGTGTCT CTACTCCTGT GGGTGAGTCT 44249 | || |||| ||| || || |||||||||| |||||||| | ||||||| || |||||||||| AAATTGCATT GTGAATTACT TGACATGCCT ATTCGTGTTT CTACTCCGGT GGGTGAGTCT 180 GTGATAGCTG AGAAGGTGTA TAGGTCTTGT CTTGTGACTT TTGTGGGGAG CAATACTCAT 44189 ||||||| || | ||||| | |||||||||| | |||| || | |||||||| ||| ||| || GTGATAGTTG AAAAGGTACA TAGGTCTTGT TTGGTGAATT TCGTGGGGAG CAACACTTAT 240 GTAGATTTGA TTATTCTAGA GATGGTTGAT TTCGATGTAA TTCTGGGTAT GACTTGGCTT 44129 |||||||| ||| | |||| |||| ||| || ||||||| |||||||||| |||||||||| CTAGATTTGG TTACTTTAGA AATGGGTGAC TTTGATGTAA TTCTGGGTAT GACTTGGCTT 300 TCTCCAAATT TTGCAATCTT AGATTATAAT GCTAAAACTG TGACATTGGC CAAGCCTGGG 44069 ||||| |||| |||| ||||| |||| |||| |||||||| | |||| || || |||||||||| TCTCCCAATT TTGCGATCTT GGATTGTAAT GCTAAAACGG TGACGTTAGC CAAGCCTGGG 360 ACAGATCCGT TAGTGTGGGA GGTTGACTAT ATTTCCACTC CAGTTCGTAT TATCTCTTTT 44009 |||||||||| |||||||||| || |||||| | ||||| || | || ||||| |||||| ||| ACAGATCCGT TAGTGTGGGA GGGTGACTAC ACTTCCAATC CGGTGCGTAT TATCTCCTTT 420 CTTCGTGCTA AGAGGATAAT TAGTAAGGGT TGTTTAGCTT TCTTGGCCCA TCTTAGGGAT 43949 ||| ||||| ||| ||| | |||||||||| ||| || | | ||||||| || ||| | |||| CTTTGTGCTC AGAAGATGGT TAGTAAGGGT TGTCTATCCT TCTTGGCACA TCTCAAGGAT 480 GATACTTCCA AAGTACCTTC GATTGAGTCT GTTTCGATAG TCTGTGAGTT CCTGGATGTG 43889 || ||| | ||||||| || ||||| | |||| | ||| | || || || |||||||| GACACTATCC AAGTACCCTC AATTGAATTA GTTTTGGTAG TTTGAGAATT TTTGGATGTG 540 TT 43887 || TT 542 hqPGS_C08HBa0027D09.1-_SGN-E355026- (44428 43887) ******************************************************************************** EST sequence 48 -strand 331 n (File: SGN-E352716-) 1 TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 61 TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 121 GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 181 ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 241 GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 301 ACTGTGACGT TAGCCAAGCC TGGGACAGAT C Predicted gene structure (within gDNA segment 45056 to 43255): Exon 1 44392 44062 ( 331 n); cDNA 1 331 ( 331 n); score: 0.909 MATCH C08HBa0027D09.1- SGN-E352716- 0.909 331 1.000 C PGS_C08HBa0027D09.1-_SGN-E352716- (44392 44062) Alignment (genomic DNA sequence = upper lines): TTGGTCTGTG ATTGCATGGC TTCTGTATTA TTTGATCTTG GATCCACATT TTCATATGTA 44333 || | |||| |||||||||| || ||||||| ||||| | || |||||||||| |||||||||| TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 60 TCTTCCTCAT TTGCTACTGA TCTTGATTTA CATTATGATT TGCTTGACAT GCCTATTCGT 44273 |||||||||| ||||||||| |||| | ||| ||||||| | |||||||||| |||||||||| TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 120 GTCTCTACTC CTGTGGGTGA GTCTGTGATA GCTGAGAAGG TGTATAGGTC TTGTCTTGTG 44213 || ||||||| | |||||||| |||||||||| | ||| || | | |||||||| | |||| ||| GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 180 ACTTTTGTGG GGAGCAATAC TCATGTAGAT TTGATTATTC TAGAGATGGT TGATTTCGAT 44153 |||||||||| |||||||||| | ||||||| ||| |||| |||| ||||| |||||| ||| ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 240 GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTAGATTA TAATGCTAAA 44093 |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| |||||||||| GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 300 ACTGTGACAT TGGCCAAGCC TGGGACAGAT C 44062 |||||||| | | |||||||| |||||||||| | ACTGTGACGT TAGCCAAGCC TGGGACAGAT C 331 hqPGS_C08HBa0027D09.1-_SGN-E352716- (44392 44062) ******************************************************************************** EST sequence 125 -strand 720 n (File: SGN-E356614-) 1 AGCCCATCTG ATACTAGGGC AGTGACTCTT CCACTGACTG AGGAAGTAAT AGAGAAAGGG 61 AGGGATGGGG AAACTGANCA AGTGCAAAAT GAGGAAATGC CACCCCAACC TACCCCAGAG 121 ATGATCAATC AGGTTCTGGC TTATCTTAGC GGGTTATCTG ATCAAGGTCA AGCACCTCCA 181 GTGTTTTCTG CGCCAACACC TCCGGTTTCA GAAGTACAAC ATGCGGCTAC TATGGCTCCC 241 CGCATGGATG TTCCATTGGA CATAGGCACA TTTCCACGTT TGACTACTGT CCCTATAATG 301 ACAAATGATC AGCATGAACT TTTCAGTAAG TTCTTGAAAT TGAAACCTCC GGTCTTCAAG 361 GGTGCTGAAT CGGAGGATGC TTATGATTTT CTGGTTGACT GTCACGAGCT ACTACACAAG 421 ATGGGTATAG TAGAACGGTT TGGTGTGGAG TTTGTGACTT ATCAGTTTCA AGGGAACGCC 481 CAAATGTGGT GGCGGTCACA TATCGAGTGT CAACCAATAG AGGCATCACC TATGACTTGG 541 GCCTCATTCT ATAGTTTGTT TATGGAGAAG TATATCCCCC GGACTTTGAG GGATAAGAAA 601 AGGGATGAGT TCTTGAGCCT AGAGCAAGGT AGGGTGTCAG TTAATGCTTA TGAGGCTAAG 661 TTTCGTGCAC TATCCAGATA TGCCACTCAA CTCTGTTTCA GTCCTCAAGA GCGGATTCGC Predicted gene structure (within gDNA segment 47605 to 43121): Exon 1 45741 45026 ( 716 n); cDNA 4 720 ( 717 n); score: 0.827 MATCH C08HBa0027D09.1- SGN-E356614- 0.827 716 0.994 C PGS_C08HBa0027D09.1-_SGN-E356614- (45741 45026) Alignment (genomic DNA sequence = upper lines): CCAGCCAGTA ATAGGGCGGT GACTCCTCCA CCGACTGATG AGGTACTA-A GAGAGGTTGA 45683 ||| | || |||||| || ||||| |||| | |||||| | | ||| || | || ||| | CCATCTGATA CTAGGGCAGT GACTCTTCCA CTGACTGAGG AAGTAATAGA GAAAGGGAG- 62 GGAAGGGGAA AACGAGTAGG TTCAAGATGA GGAATTACCA TCCCAGCCTA CCTCAGAGAT 45623 ||| |||||| | || | | | ||| |||| |||| | ||| |||| |||| || ||||||| GGATGGGGAA ACTGANCAAG TGCAAAATGA GGAAATGCCA CCCCAACCTA CCCCAGAGAT 122 GATTAACCAG GTTCTTACTT ATCTTAGCGG GTTATCTGAT CAGGGACAAA CACCTCCAGT 45563 ||| || ||| ||||| ||| |||||||||| |||||||||| || || ||| |||||||||| GATCAATCAG GTTCTGGCTT ATCTTAGCGG GTTATCTGAT CAAGGTCAAG CACCTCCAGT 182 GTTTTCTACA CCAGCACCTC AGGTTCCGGG AGTACAACAT GCAGCTGCTG TGGCTCCCCA 45503 ||||||| | ||| |||||| |||| | | |||||||||| || ||| || ||||||||| GTTTTCTGCG CCAACACCTC CGGTTTCAGA AGTACAACAT GCGGCTACTA TGGCTCCCCG 242 CATGGATTCC TCATTGGAAG TAGGCACGTT TCCTCGATTG ACTACAGGGT CTATAGTGAC 45443 ||||||| ||||||| ||||||| || ||| || ||| ||||| | ||||| |||| CATGGATGTT CCATTGGACA TAGGCACATT TCCACGTTTG ACTACTGTCC CTATAATGAC 302 AAGTGTTCAG CATGAACTTT TCACTAAATT CTTAAAATTG AAACATCCAG TCTTCAAGGG 45383 || || |||| |||||||||| ||| ||| || ||| |||||| |||| ||| | |||||||||| AAATGATCAG CATGAACTTT TCAGTAAGTT CTTGAAATTG AAACCTCCGG TCTTCAAGGG 362 TGCTGAATCT GAGGATTCCT ATGATTTTCT GGTATATTGT CATGAGCTGC TAGATAAGAT 45323 ||||||||| |||||| | | |||||||||| ||| | ||| || ||||| | || | ||||| TGCTGAATCG GAGGATGCTT ATGATTTTCT GGTTGACTGT CACGAGCTAC TACACAAGAT 422 GGACATAGTA GAACGATTCG GTGTTGAGTT TGTGACCTAC CAGTTTC-AG GGAATGCCAA 45264 || |||||| ||||| || | |||| ||||| |||||| || ||||||| || |||| ||| | GGGTATAGTA GAACGGTTTG GTGTGGAGTT TGTGACTTAT CAGTTTCAAG GGAACGCCCA 482 AATGTGGTGG TGGTCGTATG TTGAGTGTCA ACCAGCACAG GCATCACCTA TGACTTGGGC 45204 |||||||||| |||| || | |||||||| |||| | || |||||||||| |||||||||| AATGTGGTGG CGGTCACATA TCGAGTGTCA ACCAATAGAG GCATCACCTA TGACTTGGGC 542 ATCATTCTCT AGCTTATTTA TGGAGAAGTA TATACCTCGG ACTTTGAGGG ACAAGAGGAG 45144 ||||||| | || || |||| |||||||||| ||| || ||| |||||||||| | |||| || CTCATTCTAT AGTTTGTTTA TGGAGAAGTA TATCCCCCGG ACTTTGAGGG ATAAGAAAAG 602 AGATGAGTTC CTGAGCTTAG AGCAAGGCAG GATGTATGTT ACTGCTTATG AGGCTAAATT 45084 ||||||||| ||||| ||| ||||||| || | ||| ||| | |||||||| ||||||| || GGATGAGTTC TTGAGCCTAG AGCAAGGTAG GGTGTCAGTT AATGCTTATG AGGCTAAGTT 662 TCGTGCACTA TCCAGGTATG CCACCCAGCT TTGCTTCAGT CCACAAGAGC GGATTTGC 45026 |||||||||| ||||| |||| |||| || || || |||||| || ||||||| ||||| || TCGTGCACTA TCCAGATATG CCACTCAACT CTGTTTCAGT CCTCAAGAGC GGATTCGC 720 hqPGS_C08HBa0027D09.1-_SGN-E356614- (45741 45026) ******************************************************************************** EST sequence 26 -strand 664 n (File: SGN-E352401-) 1 AGAAGGGGAG GATGGGGAAA CTGAACAAGT GCAAATGAGG GAAATGGCAC CCCAACCTAC 61 CCCAGAGATG ATCAATCAGG TTCTGGCTTA TCTTAGCGGG TTATCTGATC AAGGTCAAGC 121 ACCTCCAGTG TTTTCTGCGC CAACACCTCC GGTTTCAGAA GTACAACATG CGGCTACTAT 181 GGCTCCCCGC ATGGATGTTC CATTGGACAT AGGCACATTT CCACGTTTGA CTACTGTCCC 241 TATAATGACA AATGATCAGC ATGAACTTTT CAGTAAGTTC TTGAAATTGA AACCTCCGGT 301 CTTCAAGGGT GCTGAATCGG AGGATGCTTA TGATTTTCTG GTTGACTGTC ACGAGCTACT 361 ACACAAGATG GGTATAGTAG AACGGTTTGG TGTGGAGTTT GTGACTTATC AGTTTCAAGG 421 GAACGCCCAA ATGTGGTGGC GGTCACATAT CGAGTGTCAA CCAATAGAGG CATCACCTAT 481 GACTTGGGCC TCATTCTATA GTTTGTTTAT GGAGAAGTAT ATCCCCCGGA CTTTGAGGGA 541 TAAGAAAAGG GATGAGTTCT TGAGCCTAGA GCAAGGTAGG GTGTCAGTTA ATGCTTATGA 601 GGCTAAGTTT CGTGCACTAT CCAGATATGC CACTCAACTC TGTTTCAGTC CTCAAGAGCG 661 GATT Predicted gene structure (within gDNA segment 47075 to 43151): Exon 1 45691 45029 ( 663 n); cDNA 1 664 ( 664 n); score: 0.831 MATCH C08HBa0027D09.1- SGN-E352401- 0.831 663 0.998 C PGS_C08HBa0027D09.1-_SGN-E352401- (45691 45029) Alignment (genomic DNA sequence = upper lines): AGAGGTTGAG GAAGGGGAAA ACGAGTAGGT TCAAGATGAG G-AATTACCA TCCCAGCCTA 45633 ||| | ||| || ||||||| || | || ||| ||||| | || | || |||| |||| AGAAGGGGAG GATGGGGAAA CTGAACAAGT GCAA-ATGAG GGAAATGGCA CCCCAACCTA 59 CCTCAGAGAT GATTAACCAG GTTCTTACTT ATCTTAGCGG GTTATCTGAT CAGGGACAAA 45573 || ||||||| ||| || ||| ||||| ||| |||||||||| |||||||||| || || ||| CCCCAGAGAT GATCAATCAG GTTCTGGCTT ATCTTAGCGG GTTATCTGAT CAAGGTCAAG 119 CACCTCCAGT GTTTTCTACA CCAGCACCTC AGGTTCCGGG AGTACAACAT GCAGCTGCTG 45513 |||||||||| ||||||| | ||| |||||| |||| | | |||||||||| || ||| || CACCTCCAGT GTTTTCTGCG CCAACACCTC CGGTTTCAGA AGTACAACAT GCGGCTACTA 179 TGGCTCCCCA CATGGATTCC TCATTGGAAG TAGGCACGTT TCCTCGATTG ACTACAGGGT 45453 ||||||||| ||||||| ||||||| ||||||| || ||| || ||| ||||| | TGGCTCCCCG CATGGATGTT CCATTGGACA TAGGCACATT TCCACGTTTG ACTACTGTCC 239 CTATAGTGAC AAGTGTTCAG CATGAACTTT TCACTAAATT CTTAAAATTG AAACATCCAG 45393 ||||| |||| || || |||| |||||||||| ||| ||| || ||| |||||| |||| ||| | CTATAATGAC AAATGATCAG CATGAACTTT TCAGTAAGTT CTTGAAATTG AAACCTCCGG 299 TCTTCAAGGG TGCTGAATCT GAGGATTCCT ATGATTTTCT GGTATATTGT CATGAGCTGC 45333 |||||||||| ||||||||| |||||| | | |||||||||| ||| | ||| || ||||| | TCTTCAAGGG TGCTGAATCG GAGGATGCTT ATGATTTTCT GGTTGACTGT CACGAGCTAC 359 TAGATAAGAT GGACATAGTA GAACGATTCG GTGTTGAGTT TGTGACCTAC CAGTTTC-AG 45274 || | ||||| || |||||| ||||| || | |||| ||||| |||||| || ||||||| || TACACAAGAT GGGTATAGTA GAACGGTTTG GTGTGGAGTT TGTGACTTAT CAGTTTCAAG 419 GGAATGCCAA AATGTGGTGG TGGTCGTATG TTGAGTGTCA ACCAGCACAG GCATCACCTA 45214 |||| ||| | |||||||||| |||| || | |||||||| |||| | || |||||||||| GGAACGCCCA AATGTGGTGG CGGTCACATA TCGAGTGTCA ACCAATAGAG GCATCACCTA 479 TGACTTGGGC ATCATTCTCT AGCTTATTTA TGGAGAAGTA TATACCTCGG ACTTTGAGGG 45154 |||||||||| ||||||| | || || |||| |||||||||| ||| || ||| |||||||||| TGACTTGGGC CTCATTCTAT AGTTTGTTTA TGGAGAAGTA TATCCCCCGG ACTTTGAGGG 539 ACAAGAGGAG AGATGAGTTC CTGAGCTTAG AGCAAGGCAG GATGTATGTT ACTGCTTATG 45094 | |||| || ||||||||| ||||| ||| ||||||| || | ||| ||| | |||||||| ATAAGAAAAG GGATGAGTTC TTGAGCCTAG AGCAAGGTAG GGTGTCAGTT AATGCTTATG 599 AGGCTAAATT TCGTGCACTA TCCAGGTATG CCACCCAGCT TTGCTTCAGT CCACAAGAGC 45034 ||||||| || |||||||||| ||||| |||| |||| || || || |||||| || ||||||| AGGCTAAGTT TCGTGCACTA TCCAGATATG CCACTCAACT CTGTTTCAGT CCTCAAGAGC 659 GGATT 45029 ||||| GGATT 664 hqPGS_C08HBa0027D09.1-_SGN-E352401- (45691 45029) ******************************************************************************** EST sequence 307 +strand 554 n (File: SGN-E329287+) 1 ACCTAGCCCA TCTGGTACTA AGGCGGTGAC ACCTCCACCA ACTGAGGAAG TGGTAAGAGA 61 GGGTGAGGAT GGGGAGAATG AACAAGTGCA GAATGAGGAA TTGCCACCCC AACCTACCCA 121 AGAGATGATC AATCAGGTTC TTGCTTACCT TAGCGGGTTA TCTGATCAAG GCCAAGCACC 181 TCCAGTGTTT TCTGCACTAG CACCTCAGGC TCCGGAGGTA CAACATGCGC CTACTGTGAC 241 TCCCCGCATC GATACCTCAT TGGAAATAGG AACGTTTCCC CGTCTGACTA CAGGGCCTAT 301 AATGACAAAT GATCAGCATG AACTTTTTAG TAAGTTCTTG AAATTGAAAC CTCAAGTCTA 361 CAAGGGTGTT GAATCTGAGG ATGCCTACGA TTTTCTGGTT GACTGTCATG AGCTACTACA 421 CAAGATGGGT ATAGTAGAAC GGTTTGGTGT TGAGTTTGTG ACTTATCAGT TTCAAGGGAA 481 CGCCAAAATG TGGTGGCGGT CACATGTTGA GTGTCAACCA ACAGAGGCAC CACGTATGAC 541 TTGGGCATCA TTCT Predicted gene structure (within gDNA segment 47680 to 44586): Exon 1 45748 45196 ( 553 n); cDNA 1 554 ( 554 n); score: 0.840 MATCH C08HBa0027D09.1- SGN-E329287+ 0.840 553 0.998 C PGS_C08HBa0027D09.1-_SGN-E329287+ (45748 45196) Alignment (genomic DNA sequence = upper lines): ACCTGGTCCA GCCAGTAATA GGGCGGTGAC TCCTCCACCG ACTGATGAGG TACTAAGAGA 45689 |||| | ||| | ||| || ||||||||| |||||||| ||||| || | | ||||||| ACCTAGCCCA TCTGGTACTA AGGCGGTGAC ACCTCCACCA ACTGAGGAAG TGGTAAGAGA 60 GGTTGAGGAA GGGGAAAACG AGTAGGTTCA AGATGAGGAA TTACCATCCC AGCCTACCTC 45629 || |||||| ||||| || | | | || || |||||||| || ||| ||| | |||||| GGGTGAGGAT GGGGAGAATG AACAAGTGCA GAATGAGGAA TTGCCACCCC AACCTACCCA 120 AGAGATGATT AACCAGGTTC TTACTTATCT TAGCGGGTTA TCTGATCAGG GACAAACACC 45569 ||||||||| || ||||||| || |||| || |||||||||| |||||||| | | ||| |||| AGAGATGATC AATCAGGTTC TTGCTTACCT TAGCGGGTTA TCTGATCAAG GCCAAGCACC 180 TCCAGTGTTT TCTACACCAG CACCTCAGGT TCCGGGAGTA CAACATGCAG CTGCTGTGGC 45509 |||||||||| ||| ||| || ||||||||| ||||| ||| |||||||| || ||||| | TCCAGTGTTT TCTGCACTAG CACCTCAGGC TCCGGAGGTA CAACATGCGC CTACTGTGAC 240 TCCCCACATG GATTCCTCAT TGGAAGTAGG CACGTTTCCT CGATTGACTA CAGGGTCTAT 45449 ||||| ||| ||| |||||| ||||| |||| |||||||| || |||||| ||||| |||| TCCCCGCATC GATACCTCAT TGGAAATAGG AACGTTTCCC CGTCTGACTA CAGGGCCTAT 300 AGTGACAAGT GTTCAGCATG AACTTTTCAC TAAATTCTTA AAATTGAAAC ATCCAGTCTT 45389 | |||||| | | |||||||| ||||||| | ||| ||||| |||||||||| || ||||| AATGACAAAT GATCAGCATG AACTTTTTAG TAAGTTCTTG AAATTGAAAC CTCAAGTCTA 360 CAAGGGTGCT GAATCTGAGG ATTCCTATGA TTTTCTGGTA TATTGTCATG AGCTGCTAGA 45329 |||||||| | |||||||||| || |||| || ||||||||| | ||||||| |||| ||| | CAAGGGTGTT GAATCTGAGG ATGCCTACGA TTTTCTGGTT GACTGTCATG AGCTACTACA 420 TAAGATGGAC ATAGTAGAAC GATTCGGTGT TGAGTTTGTG ACCTACCAGT TTCA-GGGAA 45270 ||||||| |||||||||| | || ||||| |||||||||| || || |||| |||| ||||| CAAGATGGGT ATAGTAGAAC GGTTTGGTGT TGAGTTTGTG ACTTATCAGT TTCAAGGGAA 480 TGCCAAAATG TGGTGGTGGT CGTATGTTGA GTGTCAACCA GCACAGGCAT CACCTATGAC 45210 ||||||||| |||||| ||| | ||||||| |||||||||| || ||||| ||| |||||| CGCCAAAATG TGGTGGCGGT CACATGTTGA GTGTCAACCA ACAGAGGCAC CACGTATGAC 540 TTGGGCATCA TTCT 45196 |||||||||| |||| TTGGGCATCA TTCT 554 hqPGS_C08HBa0027D09.1-_SGN-E329287+ (45748 45196) ******************************************************************************** EST sequence 144 -strand 835 n (File: SGN-E546219-) 1 TGATCAGACA CCTTTATTCT TCGTACTTAC CATGGGTAGC ACAAAATACG TTCAGCGACA 61 TGTACAACCC GATAACCTTG CATCTTGGTT GAAGGATTGT AAGGACAGAA AGTTGAAGCC 121 ATACTTGAAG TCACAGCCAA TTCCAGAATT TAACAATGAA ACTGTGAAGG TGGTGGTTGC 181 AGAGACTCTT GACGATATGG TGTTTAATTC GGGAAAAGAT GTACTGTTGG AGTTCTATCG 241 ACTTGGGTGT AGATATTGTG AGGAGTTTGC TCCCGTCTTG GATGAAATAG CTATCTCATT 301 TGAAAAAGAT CCTCATGTCG TGATTGCTAA AATTGATGGA ACGGAAAATG ATATACCTCG 361 TGACGTATTT GAAGTTGAAG GATTCCCAAC TTTATACTTG AGATCTTCAA CGGGTAGTTT 421 GTCACGGTTT GAGGGTAATA GAACAAAAGA GGCCATTATT GAATTTATCC AGACAAACAG 481 AGGTAGCCCT GCCTTTGATT TTAGCATATC ACAAACTCAA ACAGATCAAG TGAAGGATGA 541 GTTGTAAGAA GCAAGTGCAC CATCAACTTC GACCCGCCTT CAACTCTAGC CAGTCTCCAG 601 CACATCAGAT TTCAGGGTGA GCTATTATTC CTAGCTCGGA CTGGATTCTC TCCCTCACGT 661 CTTGATGTCT TGAAGTTCGG ACATGGACCG TTTTCTTTTT ACTTATTTTA GCTTCTTAAA 721 TACTCTTAGA TTTACTGAGG ATAGATGTTA TTGATGTGAT GACTTCCAGA TTTTGGGATT 781 AATAAATATT AAACTTTAGA AGTTTATTTA ATTGATTACG TTAATAAAAA AAAAA Predicted gene structure (within gDNA segment 53459 to 44623): Exon 1 49529 49499 ( 31 n); cDNA 520 547 ( 28 n); score: 0.710 Intron 1 49498 46418 (3081 n); Pd: 0.900 (s: 0), Pa: 0.807 (s: 0.76) Exon 2 46417 46137 ( 281 n); cDNA 548 825 ( 278 n); score: 0.838 PPA cDNA 826 835 MATCH C08HBa0027D09.1- SGN-E546219- 0.838 312 0.374 C PGS_C08HBa0027D09.1-_SGN-E546219- (49529 49499,46417 46137) Alignment (genomic DNA sequence = upper lines): AAAAAATGAA GTGAAATATG CAGCTATGAA AATATTCTTG AATTTTTAGA AAAAATGACT 49470 || | || || ||||| ||| || | || | | AACAGATCAA GTGAAGGATG -AG-T-TGTA A......... .......... .......... 547 TATACGTTGA AAGCAATCTG AAAATAATCT TGAAATTATG GAATAAAAAC TACTTGTAAC 49410 .......... .......... .......... .......... .......... .......... 547 GTTGATACAA ATATGTTTGA AAATGACAAT CTGAAAGTAT TTTAAAAATT CAAAAATATT 49350 .......... .......... .......... .......... .......... .......... 547 TGTTATTATC TGGTTGATTT TTTTAAGGAA TTAATTCAAA AAAATAATAT TATTTTAACT 49290 .......... .......... .......... .......... .......... .......... 547 AACTAGAGAT ATTTAAGGCA ATGATGATAA TTTGAAAATG TTTAATATCC CGAAAAATGT 49230 .......... .......... .......... .......... .......... .......... 547 GCTAATCATA TATTTAACTT TAATTAACTC CCTAAAAAGT GCAACTATTC ATATTAAAAA 49170 .......... .......... .......... .......... .......... .......... 547 ATGTGCTACC TGTATTAAAT GTAGCAATTA ATGAAGAAAC AAAAGTAATG TTAATATTTT 49110 .......... .......... .......... .......... .......... .......... 547 ATCTATCTTT AATTTAACTC AATAAATAGT TAAACTCTTC AAATTCTCAA GCGTGCAACA 49050 .......... .......... .......... .......... .......... .......... 547 TTGAATAAAT ACAATAATTA TGACTGACAA AAGTCACTTA GTTTATATTG TCATAAATTC 48990 .......... .......... .......... .......... .......... .......... 547 TTAATCATTA AAATTAATTA CTCATTATCA ATCTATCTAC TTAATTTTTA ATAACAAGTC 48930 .......... .......... .......... .......... .......... .......... 547 TTTTTAATAA ATTAGAGTTA ACAATATAAT TACTAATAAA ATGCTATAGA GTGAGATATT 48870 .......... .......... .......... .......... .......... .......... 547 AAATGCTACA AAATGAAATT GAAACTCTAA TGTAATAACT TGGTAATAAT ACTACATATA 48810 .......... .......... .......... .......... .......... .......... 547 ATGCTATATA CAAAATTTAC TCATAATTAT TATGTGCAAA AATTTTAATG ATAGAATAGA 48750 .......... .......... .......... .......... .......... .......... 547 TTTTATCAAA AGTAATAAAA AGAATTGAGC CCACAAAGTG ATAAAATTCA GTTTATCATA 48690 .......... .......... .......... .......... .......... .......... 547 CAAATCTTCA CAATGTTATT AGAAGTTCAA TAAAGAAATA TTCTTCAAAA GTATTTTTAG 48630 .......... .......... .......... .......... .......... .......... 547 TAAAAGCAAT TAAAAATGTA AAAGATGAGC ATAATGAAAT ATTTTTAAGT GCAATCAAAA 48570 .......... .......... .......... .......... .......... .......... 547 TTTAAATATA TGATTATTTA AATAATATTT AAAAATAGAC AAACAAATTA ATGAAGAAAG 48510 .......... .......... .......... .......... .......... .......... 547 TGCGATTAAT TCATAAAAAT TTTTAAAGAA TTAAATTAGA ATCTATATTT TATCTATCTC 48450 .......... .......... .......... .......... .......... .......... 547 AAAAATAACT AAACTCATAT TAAGGGACGA TATTTTATCT ATCTCAAAAT AACTAAACTC 48390 .......... .......... .......... .......... .......... .......... 547 ATATTAAGGG ACGACTTTGA TTAAGATAAA AGATATACAA GGATTAACAT TGTAGACATC 48330 .......... .......... .......... .......... .......... .......... 547 ATATTGAGAA TTTAATGTAA CTATTTAGAC AGTAGTAATC TAGAAACTCT AATTTAAAAA 48270 .......... .......... .......... .......... .......... .......... 547 TTAGTGTTGC ATGAATTATA ATGCAACAAT TTTAAAAAAA ATCACATAAC TTACCTAATT 48210 .......... .......... .......... .......... .......... .......... 547 TATGAGAAAA ACAACCAAAT GTTGTATGAG TTAACAATCA TTTTTATAGG GAAAAACTAT 48150 .......... .......... .......... .......... .......... .......... 547 ATAAATGGGT CATAAATTTT AAATATACCC AAATTTAAAG TAATTCCTGA AATATCTATT 48090 .......... .......... .......... .......... .......... .......... 547 TTTTCATAAA TAATTTTAGT TAATACCCCC TATTCATTAA AGGTGATAAT TTTTGCTTAA 48030 .......... .......... .......... .......... .......... .......... 547 CTGATAACAA ATCGATATCC TATATTGTAT TGGTATCATT AAGGTTGATA ATTTCGCTTA 47970 .......... .......... .......... .......... .......... .......... 547 ACTGATATTA AATCAATATG TGTATATATA TAAAAGGTTT CTTGTTAAGA AATTATTTAT 47910 .......... .......... .......... .......... .......... .......... 547 TAGACAGTAA TACTATAAGA GTATATATGT ATATTATTGT GGTATCATCA AAGTTTCTTG 47850 .......... .......... .......... .......... .......... .......... 547 ATAAAAAATT ACTACTGATT AATTTCTTAA CATGAAACCT TAATGATATC AACACTATAT 47790 .......... .......... .......... .......... .......... .......... 547 ATATATATAT ATATATATAT ATGTAACAAC CTGTTTAGTC GGTTCGAGCA GTAGAACTAT 47730 .......... .......... .......... .......... .......... .......... 547 TTTTGATAAA ACTGACTGGG TCGACGGATC ACGCGACGGA CCGTCATGGA CACAACGAAC 47670 .......... .......... .......... .......... .......... .......... 547 CAGGATGGAC TCCGTCATCC CATACTTGTG TAATTTCTTC TGCTGCTCTC CTCATTACCC 47610 .......... .......... .......... .......... .......... .......... 547 TCGACGACAG GTAGGACGAA CCGTCATAGG CACGACGGTC CGTCGAGCGT CTTCGTTTCA 47550 .......... .......... .......... .......... .......... .......... 547 AAATACTTCA ACTCTGAAAT CTGGGTACTA GGATCGACTC TCTGAACTTC ACGACGGAAC 47490 .......... .......... .......... .......... .......... .......... 547 TGCAGGATGG ACCGTCACAA GTTGCATAAC CTCACTATTG AAATTAACTC TCTGAACGTT 47430 .......... .......... .......... .......... .......... .......... 547 GTGAAAGGCC TGCAGAACGG ACCGTCGTAG ATACGACGGA CCGTCACAAG CTGCGTAACC 47370 .......... .......... .......... .......... .......... .......... 547 CCGACTTGGT CAGACTTCCG CTAAAAGTTT AAATGGGTAT TTTGGGCTAT TCATGATTAT 47310 .......... .......... .......... .......... .......... .......... 547 AATTATAAAA TTAGTGGGGT AAGTTTGATA ATTTATTTAC TTGAGGGTTA AAGAAGATAA 47250 .......... .......... .......... .......... .......... .......... 547 TAAGGAAATA AATAGTGGGT TACTTTTATC ATAATGGATT ATATGATAAT TAGGGTAAAA 47190 .......... .......... .......... .......... .......... .......... 547 GAAAAAGAAT CTGGAGAAGA AAAATAAAAA GAACAGAGAG GGAGAACGAG CGAGAAAGAG 47130 .......... .......... .......... .......... .......... .......... 547 AGAACGAAGA GGACAGCAAA GGCATTGGGG AAGTAGCTTG CTTGGTCACA ATTCTTCGGT 47070 .......... .......... .......... .......... .......... .......... 547 GGAGGTAGGT TATGGTTTAT TTCTATGTGA TAGATAAACT CTATATAGCG ATTGATATGT 47010 .......... .......... .......... .......... .......... .......... 547 ATTGGGTGGT ATTGTAAAGT CTTCTATATG CTTGATTGTG TGTTTGTATG TTGTGATTGT 46950 .......... .......... .......... .......... .......... .......... 547 GTAATTGTGG TGGATTAGAA TTATAAGATT GTTGAAAATC CTAACTTAAA TCCTCTCTAA 46890 .......... .......... .......... .......... .......... .......... 547 TAAGATGACG CCTTGACATA AAGAAGACTT GATGAAATAA AATAATGAGA TAAATAGATC 46830 .......... .......... .......... .......... .......... .......... 547 AATGTGTCAC GTTCCGACAC GATAACATTG GATCGAAGTG TCACGTTCCG ACACGGTAAT 46770 .......... .......... .......... .......... .......... .......... 547 ATTGGATCGG AGTGTCACGT TCGGACACGG TAGTATATGG GATTGGAGTG TCACGTTTCG 46710 .......... .......... .......... .......... .......... .......... 547 ACACGATAAT AATAAAGAGA ATGAATCTTG AATTATGTTA ATATACTCAA ATTCGAAGAA 46650 .......... .......... .......... .......... .......... .......... 547 TCTATTTCCC AAATGAGTAT GGTGTGGAGG CTTGAGACCT CATAGGTGTG CTTGGTGTTG 46590 .......... .......... .......... .......... .......... .......... 547 TTGCCAATGG TTCTTGTACT TGTTGATTGC CACTTGTTAA GTATTATGGT TGATTTTATA 46530 .......... .......... .......... .......... .......... .......... 547 TTATTATTCA GTATATATTG CTTTCTATTT TGAGTTGGCC GATGATACCT ACTCAGTACG 46470 .......... .......... .......... .......... .......... .......... 547 TGTTTCTTGT ACTGACCCCT ACTTGTAACT TTCTTCTTTG TTATTTGTGG AGTGCAGCAA 46410 | ||||| .......... .......... .......... .......... .......... ..-GAAGCAA 554 GCGTGCCACC GACTTCGACT CGTCCTCAGA TCTAGCCAGT CTTCAGCACA TCAGAGTTCA 46350 | | ||| | |||||||| || | ||| |||||||||| || ||||||| ||||| |||| GTGCACCATC AACTTCGACC CGCCTTCAAC TCTAGCCAGT CTCCAGCACA TCAGATTTCA 614 GGGTGGGCTA TTATTTCTAG CTCGTGCTGC GTTCTCTCAT TCACGTCTTG ATGTCTTGAA 46290 ||||| |||| ||||| |||| |||| ||| ||||||| |||||||||| |||||||||| GGGTGAGCTA TTATTCCTAG CTCGGACTGG ATTCTCTCCC TCACGTCTTG ATGTCTTGAA 674 GTTCGGACAT GGACC---AT CTTTTTACTA TTTTTAGCTT CTTAAATACT CTTAGATTTA 46233 |||||||||| ||||| | ||||||||| ||||||||| |||||||||| ||||||||| GTTCGGACAT GGACCGTTTT CTTTTTACTT ATTTTAGCTT CTTAAATACT CTTAGATTT- 733 GAAATTTGAG GATAGATGTT CTTGGTGTGA TGACTTCCAG ATTTTGAGAA TAATAAGTAT 46173 | |||| |||||||||| ||| ||||| |||||||||| |||||| || |||||| ||| ---A-CTGAG GATAGATGTT ATTGATGTGA TGACTTCCAG ATTTTGGGAT TAATAAATAT 789 TAAAATTTAG AAGTTTATTT AATTGATTTC GTTAAT 46137 |||| ||||| |||||||||| |||||||| | |||||| TAAACTTTAG AAGTTTATTT AATTGATTAC GTTAAT 825 hqPGS_C08HBa0027D09.1-_SGN-E546219- (49529 49499,46417 46137) ******************************************************************************** EST sequence 276 +strand 286 n (File: SGN-E355114+) 1 TTAGGTTCGT TGGTCTCATC ACACAAGAAC AGGTCTAGTA GAGTCTTTAG GAACGGTAGG 61 GGGACGCCTT TACTTTTCTT TGAGAGGCTA TAAGACTTTA GGAAAATTTC ACCCTTTCAT 121 TCTTTCTTTC GTGCTACTAC TTGAGTCCAA TTGGTATCTA GGCGATACAA ATTGGTATCT 181 GACCATCTTC ACTCTCTTTT GCAGATGGTT AGAACTAGAG CAACGACCAC GTCAACACCA 241 ACACCGGCCA GACAAGAAAC AACTGAGCCA GCCACTGGGG CTGTGG Predicted gene structure (within gDNA segment 48011 to 44870): Exon 1 45983 45824 ( 160 n); cDNA 124 284 ( 161 n); score: 0.834 MATCH C08HBa0027D09.1- SGN-E355114+ 0.834 160 0.559 C PGS_C08HBa0027D09.1-_SGN-E355114+ (45983 45824) Alignment (genomic DNA sequence = upper lines): TTCTTTCATG CTATTACTTG GATCCAATTG GTATCTAGGT GATACAAATT GGTATCTGA- 45925 ||||||| || ||| |||||| |||||||| ||||||||| |||||||||| ||||||||| TTCTTTCGTG CTACTACTTG AGTCCAATTG GTATCTAGGC GATACAAATT GGTATCTGAC 183 TATCCTCACT CTATTTCGCA GATGGTTAGA ACTAGAGCAA CAACTGTGCC AACACCAACA 45865 ||| ||||| || ||| ||| |||||||||| |||||||||| | || | | |||||||||| CATCTTCACT CTCTTTTGCA GATGGTTAGA ACTAGAGCAA CGACCACGTC AACACCAACA 243 CCGGCAAGAC AGGGTGCGTC TAAGCCAACC ATTGGGGCTG T 45824 ||||| |||| | | | | | ||||| || | |||||||| | CCGGCCAGAC AAGAAACAAC TGAGCCAGCC ACTGGGGCTG T 284 hqPGS_C08HBa0027D09.1-_SGN-E355114+ (45983 45824) ******************************************************************************** EST sequence 203 +strand 332 n (File: SGN-E252547+) 1 GTTGTAAAGT CTCCTATGTA CTTTATGGTG TGGTTGTATG TCTTGATTGT ATGGTTTCTG 61 GTTGGCTAAA ATTACGAGAC TGCTGAATTT CTAATCTTGN CCATTTCTAT TAAAATGACG 121 CCTTGAATAA AGAAGATTGA TGAAATAAAA TAATGAATAA TGGATCGCAG TGTCACGTTC 181 CGACATGATA TTATTGGATC GGAGTGTCAC GTTCCGAAAC AATAACATTA AAGGAAATAA 241 ATCTTGAACT AACTTAATAT ATCTAATCTC AAAGAACCTA TTTTCCAAAT GAGTATGGTG 301 TGGAGCCATG AGTCCTCATA GGTGTGCTTG AT Predicted gene structure (within gDNA segment 48821 to 45966): Exon 1 46998 46775 ( 224 n); cDNA 2 221 ( 220 n); score: 0.779 Intron 1 46774 46705 ( 70 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0.72) Exon 2 46704 46596 ( 109 n); cDNA 222 330 ( 109 n); score: 0.826 MATCH C08HBa0027D09.1- SGN-E252547+ 0.794 333 1.003 C PGS_C08HBa0027D09.1-_SGN-E252547+ (46998 46775,46704 46596) Alignment (genomic DNA sequence = upper lines): TTGTAAAGTC TTCTATATGC TTGATTGTGT GTTTGTATGT TGTGATTGTG T-AATTGTGG 46940 |||||||||| | |||| | | || || |||| | |||||||| ||||||| | || ||| TTGTAAAGTC TCCTATGTAC TTTATGGTGT GGTTGTATGT CTTGATTGTA TGGTTTCTGG 61 TGGATTAGAA TTATAAGATT GTTGAAAATC CTAACTTAAA TCCTCTCTAA TAAGATGACG 46880 | | || || ||| ||| | | || || | |||| | | | |||| ||| |||||| TTGGCTAAAA TTACGAGACT GCTG-AATTT CTAATCTTGN CCATTTCTAT TAAAATGACG 120 CCTTGACATA AAGAAGACTT GATGAAATAA AATAATGAGA TAAATAGATC AATGTGTCAC 46820 |||||| ||| ||||||| || |||||||||| |||||||| | | ||| |||| ||||||| CCTTGA-ATA AAGAAGA-TT GATGAAATAA AATAATGA-A T-AATGGATC GCAGTGTCAC 176 GTTCCGACAC GATAACATTG GATCGAAGTG TCACGTTCCG ACACGGTAAT ATTGGATCGG 46760 ||||||||| |||| |||| ||||| |||| |||||||||| | || GTTCCGACAT GATATTATTG GATCGGAGTG TCACGTTCCG AAACA..... .......... 221 AGTGTCACGT TCGGACACGG TAGTATATGG GATTGGAGTG TCACGTTTCG ACACGATAAT 46700 |||| .......... .......... .......... .......... .......... .....ATAAC 226 AATAAAGAGA ATGAATCTTG AATTATGTTA ATATACTCAA ATTCGAAGAA TCTATTTCCC 46640 | ||||| | || ||||||| || || ||| ||||| || || ||||| |||||| || ATTAAAGGAA ATAAATCTTG AACTAACTTA ATATATCTAA TCTCAAAGAA CCTATTTTCC 286 AAATGAGTAT GGTGTGGAGG CTTGAGACCT CATAGGTGTG CTTG 46596 |||||||||| ||||||||| | |||| ||| |||||||||| |||| AAATGAGTAT GGTGTGGAGC CATGAGTCCT CATAGGTGTG CTTG 330 hqPGS_C08HBa0027D09.1-_SGN-E252547+ (46998 46775,46704 46596) ******************************************************************************** EST sequence 137 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 52201 to 44604): Exon 1 46415 45985 ( 431 n); cDNA 1 422 ( 422 n); score: 0.753 MATCH C08HBa0027D09.1- SGN-E392027- 0.753 431 0.607 C PGS_C08HBa0027D09.1-_SGN-E392027- (46415 45985) Alignment (genomic DNA sequence = upper lines): CAGCAAGCGT GCCACCGACT TCGACTCGTC CTCAGATCTA GCCAGTCTTC AGCACATCAG 46356 |||||| ||| |||| || | || |||| | | || | ||||||||| | ||||| | CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTT- ACTACATCGG 59 -AGTTCAGGG TGGGCTATTA TTTCTAGCTC GTGCTGCGTT CTCTCATTCA CGTCTTGATG 46297 | ||||||| || |||| | |||||||| | ||| | ||| |||| ||||||||| AAATTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA AGTCTTGATG 119 TCTTGAAGTT CGGACATGGA CCATCTTTTT AC-TATTTTT AGCTTCTTAA ATACTCTTAG 46238 |||||| || | | |||||| | | ||| || | ||||||| ||||| | | ||||||||| CCTTGAACTT CCGGCATGGA CTAGCTTCTT ATGTATTTTT AGCTTTTAGA CTACTCTTAG 179 ATTTAGAAAT TTGAGGATAG ATGTTCTTGG TGTGATGACT TCCAGATTTT -GAGAATAAT 46179 ||||| || |||| ||| ||||||||| ||||||||| |||||||||| | ||||||| -TTTAGTCAT TTGATCGTAG ATGTTCTTGT GGTGATGACT TCCAGATTTT GGGGAATAAT 238 AAGTATTAAA ATTTAGAAGT TTATTTAATT GAT-T-TCGT TAATGAGCTT TGGATCTTCC 46121 | | || || |||||||| ||| | |||| | | | | | ||||||| || | |||||| AGATGTTGAA TTTTAGAAG- TTAATGAATT GGTCTGTATT TAATGAG-TT TAAGTCTTCC 296 ACATTTTTTT TTACTATTTA TAATTGATAT ACCGGTAAAT GTTGGGGTTT AGATTTGTTG 46061 ||| || | || || || | | ||| |||| | |||| ||| || || ||||| |||| ACA--TTACT TT-CTGTTGA T-ATT-ATAT ---TG-AAAT GTTAAGG-TT AGATTGGTTG 346 GTTCGCTCAC CTAGGAGAAT AAGTGTGGGT GCCACTCGCG ACTCGTTTTG GGTCGTGACA 46001 |||||||||| |||||| | |||||||||| |||| |||| || || ||| |||||||||| GTTCGCTCAC ATAGGAGGGT AAGTGTGGGT GCCAGTCGCA ACCCGGTTTT GGTCGTGACA 406 AACTTGGTAT CAGAGC 45985 |||||||||| |||||| AACTTGGTAT CAGAGC 422 hqPGS_C08HBa0027D09.1-_SGN-E392027- (46415 45985) ******************************************************************************** EST sequence 285 +strand 481 n (File: SGN-E246710+) 1 CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 61 TGAATATTGA GGGAGCGGAG TGTCACGTAC CGACACAAGA GAAATAAAGA TAATGAATCT 121 TGAAAGATGT TAATATACTC AATCTAATGA ACATGATTCC CAAATGAGTA TGGTATTGAG 181 GCTTGAGTCC TCATGTGTGA ACTTGACGGT AATTGTTAAT GATATAGTAT TTGTTGTTGC 241 TACATGTTGA GTATCATAGT TGATTTTATG ATATTACTTG GTATATATAT TGATTTCTAT 301 TTTGAGTTGG CCGATGATAT CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT 361 GTTCTCTTCT TGTTTATTTG TGGAGTGCAG CAAACGTGCC ATCGTGTTCA ACTCAACAGT 421 AATTCAAGCC AGTCTTACTA CATCGGAAAT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC 481 T Predicted gene structure (within gDNA segment 48535 to 44920): Exon 1 46725 46322 ( 404 n); cDNA 77 481 ( 405 n); score: 0.764 MATCH C08HBa0027D09.1- SGN-E246710+ 0.764 404 0.840 C PGS_C08HBa0027D09.1-_SGN-E246710+ (46725 46322) Alignment (genomic DNA sequence = upper lines): GGAGTGTCAC GTTTCGACAC GATAATAATA AAGAGAATGA ATCTTGAATT ATGTTAATAT 46666 |||||||||| || |||||| | | |||| |||| ||||| |||||||| |||||||||| GGAGTGTCAC GTACCGACAC AAGAGAAATA AAGATAATGA ATCTTGAAAG ATGTTAATAT 136 ACTCAAATTC GAAGAATCTA TTTCCCAAAT GAGTATGGTG TGGAGGCTTG AGACCTCATA 46606 |||| ||| | ||| | ||||||||| ||||||||| | |||||||| || |||||| ACTC-AATCT AATGAACATG ATTCCCAAAT GAGTATGGTA TTGAGGCTTG AGTCCTCATG 195 GGTGTGCTTG -GTGTTGTTG CCAATGGTTC TTGTACTTGT TGATTGCCAC TTGTTAAGTA 46547 ||| |||| || ||| ||| | | | ||| |||| || |||| || |||| |||| TGTGAACTTG ACGGTAATTG TTAAT-GATA TAGTATTTGT TG-TTGCTAC ATGTTGAGTA 253 TTATGGTTGA TTTTATATTA TTA-TT-CAG TATATATTGC TTTCTATTTT GAGTTGGCCG 46489 | || ||||| |||||| || ||| || ||||||||| |||||||||| |||||||||| TCATAGTTGA TTTTATGATA TTACTTGGTA TATATATTGA TTTCTATTTT GAGTTGGCCG 313 ATGATACCTA CTCAGTACGT GTTTCTTGTA CTGACCCCTA CTTGTAACTT -TCTTCTTTG 46430 |||||| ||| |||||||| || | ||||| |||||||||| ||| || || ||||||| ATGATATCTA CTCAGTACCC GTGTTTTGTA CTGACCCCTA CTTTTATGTT CTCTTCTTGT 373 TTATTTGTGG AGTGCAGCAA GCGTGCCACC GACTTCGACT CGTCCTCAGA TCTAGCCAGT 46370 |||||||||| |||||||||| ||||||| | | ||| ||| | | | || ||||||| TTATTTGTGG AGTGCAGCAA ACGTGCCATC GTGTTCAACT CAACAGTAAT TCAAGCCAGT 433 CTTCAGCACA TCAG-AGTTC AGGGTGGGCT ATTATTTCTA GCTCGTGCT 46322 ||| | ||| || | | ||| |||||| ||| | | ||||| ||| | || CTT-ACTACA TCGGAAATTC AGGGTGAGCT AATGCTTCTA GCTTGGACT 481 hqPGS_C08HBa0027D09.1-_SGN-E246710+ (46725 46322) ******************************************************************************** EST sequence 256 +strand 505 n (File: SGN-E353206+) 1 ATCGGAGTGT CACGTTCCGA AACAATAACA TTAAAGGAAA TAAATCTTGA ACTAACTTAA 61 TATATCTAAT CTCAAAGAAC CTATTTTCCA AATGAGTATG GTGTGGAGCC ATGAGTCCTC 121 ATAGGTGTGC TTGATGGTGT ACATGTTATG TTGTTGTTGT TAATGGTTCA TGTGTTTTGT 181 TGCTTGCCAC CTGTTAAGTA TTGTAGTTGA TTTTATATTA TTATTCAATA TATATTGATT 241 ATTATTTTGA GTTGACCGAT GATACCTACT CAGTACGTGT TCCTTGTACT GACCCCTACT 301 TGTATTTTCT TCTCTGTTTT TTTGTGGAGT GCAACAAGTG TACCATTGAC TACGACTCGC 361 CCTCATCTCT AACCAGTCTC CAGCACATCA GAGTTCAGGA TCTATGATGA TGGGAGTTAT 421 ATAGCTGAAA ATTTATAAGA GTTTCAAGTT TGATGTGATT GAGATTGACT TNCACTCTAT 481 ACCTTGATTT TTCGGTATCA ATGCG Predicted gene structure (within gDNA segment 48111 to 43823): Exon 1 46597 46348 ( 250 n); cDNA 149 399 ( 251 n); score: 0.856 MATCH C08HBa0027D09.1- SGN-E353206+ 0.856 250 0.495 C PGS_C08HBa0027D09.1-_SGN-E353206+ (46597 46348) Alignment (genomic DNA sequence = upper lines): TGGTGTTGTT GCCAATGGTT CTTGT-ACTT GTTGATTGCC ACTTGTTAAG TATTATGGTT 46539 || ||||||| | ||||||| | ||| || |||| ||||| || ||||||| |||| | ||| TGTTGTTGTT GTTAATGGTT CATGTGTTTT GTTGCTTGCC ACCTGTTAAG TATTGTAGTT 208 GATTTTATAT TATTATTCAG TATATATTGC TTTCTATTTT GAGTTGGCCG ATGATACCTA 46479 |||||||||| ||||||||| ||||||||| || |||||| |||||| ||| |||||||||| GATTTTATAT TATTATTCAA TATATATTGA TTATTATTTT GAGTTGACCG ATGATACCTA 268 CTCAGTACGT GTTTCTTGTA CTGACCCCTA CTTGTAACTT TCTTCTTTG- TTATTTGTGG 46420 |||||||||| ||| |||||| |||||||||| ||||| | || |||||| || || ||||||| CTCAGTACGT GTTCCTTGTA CTGACCCCTA CTTGT-ATTT TCTTCTCTGT TTTTTTGTGG 327 AGTGCAGCAA GCGTGCCACC GACTTCGACT CGTCCTCAGA TCTAGCCAGT CTTCAGCACA 46360 |||||| ||| | || ||| |||| ||||| || ||||| |||| ||||| || ||||||| AGTGCAACAA GTGTACCATT GACTACGACT CGCCCTCATC TCTAACCAGT CTCCAGCACA 387 TCAGAGTTCA GG 46348 |||||||||| || TCAGAGTTCA GG 399 hqPGS_C08HBa0027D09.1-_SGN-E353206+ (46597 46348) ******************************************************************************** EST sequence 11 -strand 731 n (File: SGN-E578076-) 1 GCATCATCAA TCCCATTATT TTAGTTCATC ACGCCTTCTT TTATACCAAG GCCTCATTAT 61 GAACAAAGAG ATTAAGATTT TGCAAGATTT GGGATTCAAT AACTTCATCA TGCTTATATA 121 ATCACAATTA TATAGTTACA TTCATGCAAG CATACAATTA AGCACATAGC AGGGTTTACA 181 ATATTATCAA TACATATCAT TCTCTATTAA GAGTTTACTA CGAATATCGT AAGAGAAACC 241 ATAACCTACC TCCACCGAAG AATTGCGATC AACAAGTTAT CTTCTCAAAA TCCTTGCTAT 301 CCTCTTCGTT TCTCTTTCTT TTTCTGTTTT CTCTTTGTTC TTTCTATTTT TCTTATTCAA 361 ACGTCCTAAC GAGCAAAACA GAGAACAAAA CAACCCTAAA AATTTCAACT TTTTTCGGTT 421 TCCCGACTTC CAATTTACCA GAGATATAGA TAATTCACTG AAATTGAACA AGGGTTAAGA 481 GCAGAAGAAA TTTACGTTGT GATTAATTGG GGCAAAGCGT CGAACAGTTG AACTGCAAAT 541 TTGTTCTTCA GTTATAGATA CAAAAGATAG AGTCTTATAT GAGTTAAAGA AGACGTAGAG 601 TATACCCTAG TAAGCGAGCT GACCACGGCG GAATGAGGTG GTGAGTTGGT GGGTTTCGTC 661 GGTCAACCAA GAAATGAAAA GGAAATTGAA GTATGAAAAA CTACAGAAAA ATGACGCGTT 721 TGGCCGAGAA A Predicted gene structure (within gDNA segment 54687 to 47068): Exon 1 52596 52235 ( 362 n); cDNA 1 362 ( 362 n); score: 0.819 Intron 1 52234 51072 (1163 n); Pd: 0.000 (s: 0.69), Pa: 0.000 (s: 0) Exon 2 51071 51050 ( 22 n); cDNA 363 383 ( 21 n); score: 0.682 Intron 2 51049 50038 (1012 n); Pd: 0.901 (s: 0), Pa: 0.000 (s: 0) Exon 3 50037 50014 ( 24 n); cDNA 384 403 ( 20 n); score: 0.750 Intron 3 50013 47739 (2275 n); Pd: 0.713 (s: 0), Pa: 0.964 (s: 0) Exon 4 47738 47727 ( 12 n); cDNA 404 415 ( 12 n); score: 0.750 MATCH C08HBa0027D09.1- SGN-E578076- 0.819 420 0.575 C PGS_C08HBa0027D09.1-_SGN-E578076- (52596 52235,51071 51050,50037 50014,47738 47727) Alignment (genomic DNA sequence = upper lines): GCATCCTCAA TCCCATTACT TTAATTCATC AAGCCTTCTT CTATACCAAG GCATCATCAT 52537 ||||| |||| |||||||| | ||| |||||| | |||||||| ||||||||| || |||| || GCATCATCAA TCCCATTATT TTAGTTCATC ACGCCTTCTT TTATACCAAG GCCTCATTAT 60 TAATAATGTA TATTAAAGTT TCTTTTCAAG ATTTGGGATT CAATATTTTC ATCATGCTTA 52477 || || | | ||| ||| | ||| |||| |||||||||| ||||| ||| |||||||||| GAACAAAG-A GATT-AAG-A T-TTTGCAAG ATTTGGGATT CAATAACTTC ATCATGCTTA 116 TCTTATCACA ATCACATAGT CATATTCATG CAAGCGTACA ATTAAGCATA TAGCAGGGTT 52417 | | |||||| || | ||||| | ||||||| ||||| |||| |||||||| | |||||||||| TATAATCACA ATTATATAGT TACATTCATG CAAGCATACA ATTAAGCACA TAGCAGGGTT 176 TACAATATTA TCAATACATA TCATTCTCTA TTAAGAGTTT ACTACGAATA TCGTAAGAGA 52357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAATATTA TCAATACATA TCATTCTCTA TTAAGAGTTT ACTACGAATA TCGTAAGAGA 236 AACCATAACC TACCTCCACC GAAGAATTG- AATCAAGCAA G-AATTTTC- CCAAAGCTTT 52300 |||||||||| |||||||||| ||||||||| ||||| ||| | || ||| | ||| | || AACCATAACC TACCTCCACC GAAGAATTGC GATCAA-CAA GTTATCTTCT CAAAATCCTT 295 GTTTCTCCCT TCTCGTTCGA TTCTCTCTCT -CTCTCTC-C TGTTCTTTCT ATTTTCTTTA 52242 | | | || || | |||| | ||| | |||| |||||||||| ||||| ||| GCTATCCTCT TCGTTTCTCT TTCTTTTTCT GTTTTCTCTT TGTTCTTTCT ATTTTTCTTA 355 TTCAAACCCT CTTTCTTTTA CCCTAATTAG TATATAATTA GGAATAAAAG ATGGCAATAA 52182 ||||||| TTCAAAC... .......... .......... .......... .......... .......... 362 TACCCCACTA ATTAACTTAG GGTTACCTCT TTTAACCCCT CAAGAATTTT AGTTATTAAT 52122 .......... .......... .......... .......... .......... .......... 362 ATAAACCCAC GAAATCTATA ATTAAGGAAA GAATAGTCCA AAAACGTCCT TTAAAACTTC 52062 .......... .......... .......... .......... .......... .......... 362 ACCAGAAATC CGACTCTGCC TGGGATTTGT GCAACCTGTG ACGGGCCGTC GTGCCTGCGA 52002 .......... .......... .......... .......... .......... .......... 362 CGGTCCGTCC TGCATGTCGT CGCAAAGTTC AGAGAATGGA TTTTCACTGA AGTCTCTGTG 51942 .......... .......... .......... .......... .......... .......... 362 ACGGTCCGTC CTGCCATTCC GTCACGAAGT TTAGAGAGTC GATTTTCAGT ACCCAATTTC 51882 .......... .......... .......... .......... .......... .......... 362 AGATTTTCTA AGTGTTTTGA AACGAGACCC TGCGACGGTC CGTCGTGCCC ATGACGTTCC 51822 .......... .......... .......... .......... .......... .......... 362 GTCGTGGGGT CCGTCGCTTC TGCCAGTTTT TCCAGAATTG AAGTCTGTTG CTCAAAACGA 51762 .......... .......... .......... .......... .......... .......... 362 CTAAACGGGT CGTTACAAAA TTATTATTTA TTAAATATTA ATTAAATTTC ATATTATATA 51702 .......... .......... .......... .......... .......... .......... 362 GCTACCTTTT AAAAAACAAA ACCTAAAAAT TAGGGATTTG ATTTTAATTA ATATCATATT 51642 .......... .......... .......... .......... .......... .......... 362 ATATGGTTAC CCAATAACTA CCCACCCTCA TATCAACCAA TACTCTTTTA TATTCCCCCA 51582 .......... .......... .......... .......... .......... .......... 362 ATATACTTAA CATCTCCCCT ATTTACATGC ATCTCTTTCC ACCATATTAA TTTTGCACGC 51522 .......... .......... .......... .......... .......... .......... 362 TTTTTTTACT TTTCTCTCTC TATTAATCAA TTAAAGGCAG CACATGTTTC TCTCTCTATT 51462 .......... .......... .......... .......... .......... .......... 362 AATTAATTAA AGATAGAAAC TAGCTTTAAA CTTATTTGTC AAAATCAGAT TAAGCTTAAA 51402 .......... .......... .......... .......... .......... .......... 362 CTTCTTATTC AACTACATCT CTATCAATCT TCCACAAAAT TAGGTTTTTT ATTTTTCGAC 51342 .......... .......... .......... .......... .......... .......... 362 CATCAAATTT GCAATATTGC ATGATTTTCG GAAAAAATCG TGTTGTATAG ATAACCAAAC 51282 .......... .......... .......... .......... .......... .......... 362 AGGTTTGTTT CTTAAAGTTT TTTTTTCTCT GATTCCTTTG TCAAATTATT TAATTTTTAT 51222 .......... .......... .......... .......... .......... .......... 362 ATGTTGTTGC TTGATTTTGG GAGAAGTTTA CGTTGCATAG ATAATGCAGG TTTATTCAAG 51162 .......... .......... .......... .......... .......... .......... 362 TTTTACATTT GTTTATGTCA AATTCTTTAA TATTTATTTA ACTATAAATT TTTAGGATCT 51102 .......... .......... .......... .......... .......... .......... 362 GGATTGTTGG ATACAATGTA TAAACCAAAT ATCCTAAGGA GATTCACAAG AGGTACAAAC 51042 |||||| || | || || || .......... .......... .......... GTCCTAACGA GCAAAAC-AG AG........ 383 TATACCGGTA ACTTCATGGT TGAAATACCA TCTTTTGATC TATGTATAAC TCAAATTCAA 50982 .......... .......... .......... .......... .......... .......... 383 TCGCAAATCT CAGGCTATAC ATCTGCGATG GAATTAGAGA AGAAGCCGAA TGATGAACTA 50922 .......... .......... .......... .......... .......... .......... 383 GTAAGGTCTA GTCCTAAAAG GAAAGTAGTG TCGACGGTGA AAGCAATCGA AAAAAAATGT 50862 .......... .......... .......... .......... .......... .......... 383 TACAAGAGGA GGAAAGTAAA AAAAGTCTGT TCCGGACATG ATTGGAGAAT CGGTTGTTAA 50802 .......... .......... .......... .......... .......... .......... 383 TGAAGAATAA GACGAAGTGA GTGAAGAATC ACATAGTTCA TCAATTTTTT GTTCTTCTTC 50742 .......... .......... .......... .......... .......... .......... 383 TCTTCTTGGT GTGTGAAATC AAGAGACGAT TTTGACTTGT CACAAAAATT CAGCAGTAGA 50682 .......... .......... .......... .......... .......... .......... 383 GATCTTGTAA CACTCATCTC TGCATGTTGT ATAAAATATA TTTAACTATA TATATATATA 50622 .......... .......... .......... .......... .......... .......... 383 TCATAATATA TTAACTATTG TATTTAATTG TAGTATGTTT AAATGAATAT TTGCACTTTA 50562 .......... .......... .......... .......... .......... .......... 383 TTAAATGTGT ATGATTTTTG TGTAAATTTC GATTGCAATA TGCAAACATA TATGAACATT 50502 .......... .......... .......... .......... .......... .......... 383 GTATGAAAAT GTATAAATGT TGTACAAATT ATGAATGTCA TATTGAACTT TGATATATGT 50442 .......... .......... .......... .......... .......... .......... 383 AACAGAAACA AATGGTATAT ATATGAACAT TGTATTAATT CTATATGAAC ATTTTATGAA 50382 .......... .......... .......... .......... .......... .......... 383 TGACAGTAAA GTTCAATGTA TATATATAAT GTATAAACAT TGTATGAATT ATGAATCTCA 50322 .......... .......... .......... .......... .......... .......... 383 TATCGAACTT GGATATATGT AACAGAAACA AATGGTACAT AAATGAACAT TGTATGAATA 50262 .......... .......... .......... .......... .......... .......... 383 TTGTATGAAC ATTGTATTAA TACTATATGA ACATTTTATG AATGACAGTA TAGTTCAATG 50202 .......... .......... .......... .......... .......... .......... 383 TATATTTATA ATGTATGAAC ATTGTATGAA TTATGAATAT CATATTGAAC TTTGACATAT 50142 .......... .......... .......... .......... .......... .......... 383 GTAACAGAAA CAAATGATAT ATATATGATA TTTTTTTACG AAACCAAATT TTATAAATAT 50082 .......... .......... .......... .......... .......... .......... 383 CAATGATAAC AACTGCACTC AATAAAATAA AACGTGTTTC TAACATTCAA AACAACACAA 50022 | ||| |||||| | .......... .......... .......... .......... ....A-ACAA AACAAC-C-C 396 TAACAAATGT AACATTACGA AATCATTGTT TTTGCACAGG ATAATTTAAA TATGTCTTTC 49962 ||| |||| TAA-AAAT.. .......... .......... .......... .......... .......... 403 TATTGTGTCC AACTTGACGA CATCTACTAC AAGTCATTTT TGTCCTTTTG AATTTCACGT 49902 .......... .......... .......... .......... .......... .......... 403 CAGCAAACCC CATCCATCTT TCAAGTTTTG GTATATCCGC TGTACAAAAT TAATAAAAAA 49842 .......... .......... .......... .......... .......... .......... 403 CATATATTCT AATTTCGTTT GAAACATATA CTGTAATTTT GAAAAAAAAA TGAACTTTCA 49782 .......... .......... .......... .......... .......... .......... 403 TACACAAATG ATACACGTTT TGTATAATCT TCATACACTA ATAAAAAAAA TTCAGACTTC 49722 .......... .......... .......... .......... .......... .......... 403 AATGTTACAC AAATTTATAA TTAGTTCATA TAACCCATAC ACACTTTATA CACAGTTAAC 49662 .......... .......... .......... .......... .......... .......... 403 ATATCATTCA CATTCCTATA CAATACTCAA ATTAAACAAA CACAATACAT TTTCAATACA 49602 .......... .......... .......... .......... .......... .......... 403 AAGTTAATAT AAAAACATAT ATTATAATTT AAATAGAAAC ATATATTGTA CGTCAAAATT 49542 .......... .......... .......... .......... .......... .......... 403 TATCAGGTTA CTAAAAAATG AAGTGAAATA TGCAGCTATG AAAATATTCT TGAATTTTTA 49482 .......... .......... .......... .......... .......... .......... 403 GAAAAAATGA CTTATACGTT GAAAGCAATC TGAAAATAAT CTTGAAATTA TGGAATAAAA 49422 .......... .......... .......... .......... .......... .......... 403 ACTACTTGTA ACGTTGATAC AAATATGTTT GAAAATGACA ATCTGAAAGT ATTTTAAAAA 49362 .......... .......... .......... .......... .......... .......... 403 TTCAAAAATA TTTGTTATTA TCTGGTTGAT TTTTTTAAGG AATTAATTCA AAAAAATAAT 49302 .......... .......... .......... .......... .......... .......... 403 ATTATTTTAA CTAACTAGAG ATATTTAAGG CAATGATGAT AATTTGAAAA TGTTTAATAT 49242 .......... .......... .......... .......... .......... .......... 403 CCCGAAAAAT GTGCTAATCA TATATTTAAC TTTAATTAAC TCCCTAAAAA GTGCAACTAT 49182 .......... .......... .......... .......... .......... .......... 403 TCATATTAAA AAATGTGCTA CCTGTATTAA ATGTAGCAAT TAATGAAGAA ACAAAAGTAA 49122 .......... .......... .......... .......... .......... .......... 403 TGTTAATATT TTATCTATCT TTAATTTAAC TCAATAAATA GTTAAACTCT TCAAATTCTC 49062 .......... .......... .......... .......... .......... .......... 403 AAGCGTGCAA CATTGAATAA ATACAATAAT TATGACTGAC AAAAGTCACT TAGTTTATAT 49002 .......... .......... .......... .......... .......... .......... 403 TGTCATAAAT TCTTAATCAT TAAAATTAAT TACTCATTAT CAATCTATCT ACTTAATTTT 48942 .......... .......... .......... .......... .......... .......... 403 TAATAACAAG TCTTTTTAAT AAATTAGAGT TAACAATATA ATTACTAATA AAATGCTATA 48882 .......... .......... .......... .......... .......... .......... 403 GAGTGAGATA TTAAATGCTA CAAAATGAAA TTGAAACTCT AATGTAATAA CTTGGTAATA 48822 .......... .......... .......... .......... .......... .......... 403 ATACTACATA TAATGCTATA TACAAAATTT ACTCATAATT ATTATGTGCA AAAATTTTAA 48762 .......... .......... .......... .......... .......... .......... 403 TGATAGAATA GATTTTATCA AAAGTAATAA AAAGAATTGA GCCCACAAAG TGATAAAATT 48702 .......... .......... .......... .......... .......... .......... 403 CAGTTTATCA TACAAATCTT CACAATGTTA TTAGAAGTTC AATAAAGAAA TATTCTTCAA 48642 .......... .......... .......... .......... .......... .......... 403 AAGTATTTTT AGTAAAAGCA ATTAAAAATG TAAAAGATGA GCATAATGAA ATATTTTTAA 48582 .......... .......... .......... .......... .......... .......... 403 GTGCAATCAA AATTTAAATA TATGATTATT TAAATAATAT TTAAAAATAG ACAAACAAAT 48522 .......... .......... .......... .......... .......... .......... 403 TAATGAAGAA AGTGCGATTA ATTCATAAAA ATTTTTAAAG AATTAAATTA GAATCTATAT 48462 .......... .......... .......... .......... .......... .......... 403 TTTATCTATC TCAAAAATAA CTAAACTCAT ATTAAGGGAC GATATTTTAT CTATCTCAAA 48402 .......... .......... .......... .......... .......... .......... 403 ATAACTAAAC TCATATTAAG GGACGACTTT GATTAAGATA AAAGATATAC AAGGATTAAC 48342 .......... .......... .......... .......... .......... .......... 403 ATTGTAGACA TCATATTGAG AATTTAATGT AACTATTTAG ACAGTAGTAA TCTAGAAACT 48282 .......... .......... .......... .......... .......... .......... 403 CTAATTTAAA AATTAGTGTT GCATGAATTA TAATGCAACA ATTTTAAAAA AAATCACATA 48222 .......... .......... .......... .......... .......... .......... 403 ACTTACCTAA TTTATGAGAA AAACAACCAA ATGTTGTATG AGTTAACAAT CATTTTTATA 48162 .......... .......... .......... .......... .......... .......... 403 GGGAAAAACT ATATAAATGG GTCATAAATT TTAAATATAC CCAAATTTAA AGTAATTCCT 48102 .......... .......... .......... .......... .......... .......... 403 GAAATATCTA TTTTTTCATA AATAATTTTA GTTAATACCC CCTATTCATT AAAGGTGATA 48042 .......... .......... .......... .......... .......... .......... 403 ATTTTTGCTT AACTGATAAC AAATCGATAT CCTATATTGT ATTGGTATCA TTAAGGTTGA 47982 .......... .......... .......... .......... .......... .......... 403 TAATTTCGCT TAACTGATAT TAAATCAATA TGTGTATATA TATAAAAGGT TTCTTGTTAA 47922 .......... .......... .......... .......... .......... .......... 403 GAAATTATTT ATTAGACAGT AATACTATAA GAGTATATAT GTATATTATT GTGGTATCAT 47862 .......... .......... .......... .......... .......... .......... 403 CAAAGTTTCT TGATAAAAAA TTACTACTGA TTAATTTCTT AACATGAAAC CTTAATGATA 47802 .......... .......... .......... .......... .......... .......... 403 TCAACACTAT ATATATATAT ATATATATAT ATATGTAACA ACCTGTTTAG TCGGTTCGAG 47742 .......... .......... .......... .......... .......... .......... 403 CAGTAGAACT ATTTT 47727 | |||| |||| ...TTCAACT TTTTT 415 hqPGS_C08HBa0027D09.1-_SGN-E578076- (52596 52235,51071 51050,50037 50014) ******************************************************************************** EST sequence 249 +strand 628 n (File: SGN-E352130+) 1 AAAAGTTTAC CTTTATATTG AGTTAAATTA AAGCTAGATA AATTATTAGC ATTACAATTA 61 TTCTTCATTC CAAAGTTTCT CTATTATTTT GAAATTTCTT TCAACATATA ATTCATTTTT 121 TTCCCAAAAA TTCAAGATTA TTTTCATAGC TGCATTTTCA GTTCTGACGG ATAACTTTGT 181 GTCAATTTTA ATTAAACATG GTGGAAAGTG GAATTCTTTG GGTTAAAATC CTACCTCCAA 241 ATATGTTATG AAGACGGACG ATGATGCTTT TGTAAGGATT GATAAAATTC TATCTAGTCT 301 CAAGGGAAAG GATCCTAATG GTCTATTATA TGGTGGGATA TCTTTTGAAT GGTCTATAAC 361 GAATCAATGT TACAATTATT TTTGTATGAA TTTTGTTTGA AATAGATTGC AACTTTATAT 421 GAACTAATTT AACAATAAAT GCATGTATCA TAATAGTTTA TGATTGGCAG TTTAGTTCAA 481 TGTATATTTT TAATGTATAA ACATTGTATG AATTATGAAT GTCATATTGA TTTTGATATA 541 TGTAACAGAA ACCAATAATA TATATATAAA CATTGTATGA ATATTGTATG AACATTGTAT 601 GAATAACATA TAGAACACTT TATGAATG Predicted gene structure (within gDNA segment 55855 to 49238): Exon 1 50655 50615 ( 41 n); cDNA 415 454 ( 40 n); score: 0.780 Intron 1 50614 50392 ( 223 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.86) Exon 2 50391 50218 ( 174 n); cDNA 455 628 ( 174 n); score: 0.859 MATCH C08HBa0027D09.1- SGN-E352130+ 0.859 215 0.342 C PGS_C08HBa0027D09.1-_SGN-E352130+ (50655 50615,50391 50218) Alignment (genomic DNA sequence = upper lines): TTGTATAAAA TATATTTAAC TATATATATA TATATCATAA TATATTAACT ATTGTATTTA 50596 || ||| || || ||||||| ||| || | | |||||||| | TTATATGAAC TA-ATTTAAC AATAAATGCA TGTATCATAA T......... .......... 454 ATTGTAGTAT GTTTAAATGA ATATTTGCAC TTTATTAAAT GTGTATGATT TTTGTGTAAA 50536 .......... .......... .......... .......... .......... .......... 454 TTTCGATTGC AATATGCAAA CATATATGAA CATTGTATGA AAATGTATAA ATGTTGTACA 50476 .......... .......... .......... .......... .......... .......... 454 AATTATGAAT GTCATATTGA ACTTTGATAT ATGTAACAGA AACAAATGGT ATATATATGA 50416 .......... .......... .......... .......... .......... .......... 454 ACATTGTATT AATTCTATAT GAACATTTTA TGAATGACAG TAAAGTTCAA TGTATATATA 50356 | |||| ||| || ||| | ||||||| ||||||| | .......... .......... ....AGTTTA TGATTGGCAG TTTAGTTCAA TGTATATTTT 490 TAATGTATAA ACATTGTATG AATTATGAAT CTCATATCGA ACTTGGATAT ATGTAACAGA 50296 |||||||||| |||||||||| |||||||||| |||||| | | || ||||| |||||||||| TAATGTATAA ACATTGTATG AATTATGAAT GTCATATTG- ATTTTGATAT ATGTAACAGA 549 AACAAATGGT ACATAAATGA ACATTGTATG AATATTGTAT GAACATTGTA TTAATACTAT 50236 ||| ||| | | ||| || | |||||||||| |||||||||| |||||||||| | |||| || AACCAATAAT ATATATATAA ACATTGTATG AATATTGTAT GAACATTGTA TGAATAACAT 609 AT-GAACATT TTATGAATG 50218 || ||||| | ||||||||| ATAGAACACT TTATGAATG 628 hqPGS_C08HBa0027D09.1-_SGN-E352130+ (50655 50615,50391 50218) ******************************************************************************** EST sequence 188 +strand 536 n (File: SGN-E350862+) 1 CATTCCAAAG TTTCTCTATT ATTTTGAAAT TTCTTTCAAC ATATAATTCA TTTTTTTCCC 61 AAAAATTCAA GATTATTTTC ATAGCTGCAT TTTCAGTTCT GACGGATAAC TTTGTGTCAA 121 TTTTAATTAA ACATGGTGGA AAGTGGAATT CTTTGGGTTA AAATCCTACC TCCAAATATG 181 TTATGAAGAC GGACGATGAT GCTTTTGTAA GGATTGATAA AATTCTATCT AGTCTCAAGG 241 GAAAGGATCC TAATGGTCTA TTATATGGTG GGATATCTTT TGAATGGTCT ATAACGAATC 301 AATGTTACAA TTATTTTTGT ATGAATTTTG TTTGAAATAG ATTGCAACTT TATATGAACT 361 AATTTAACAA TAAATGCATG TATCATAATA GTTTATGATT GGCAGTTTAG TTCAATGTAT 421 ATTTTTAATG TATAAACATT GTATGAATTA TGAATGTCAT ATTGATTTTG ATATATGTAA 481 CAGAAACCAA TAATATATAT ATAAACATTG TATGAATATT GTATGAAAAA AAAAAA Predicted gene structure (within gDNA segment 55205 to 49553): Exon 1 50655 50615 ( 41 n); cDNA 350 389 ( 40 n); score: 0.780 Intron 1 50614 50392 ( 223 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.86) Exon 2 50391 50253 ( 139 n); cDNA 390 527 ( 138 n); score: 0.871 MATCH C08HBa0027D09.1- SGN-E350862+ 0.871 180 0.336 C PGS_C08HBa0027D09.1-_SGN-E350862+ (50655 50615,50391 50253) Alignment (genomic DNA sequence = upper lines): TTGTATAAAA TATATTTAAC TATATATATA TATATCATAA TATATTAACT ATTGTATTTA 50596 || ||| || || ||||||| ||| || | | |||||||| | TTATATGAAC TA-ATTTAAC AATAAATGCA TGTATCATAA T......... .......... 389 ATTGTAGTAT GTTTAAATGA ATATTTGCAC TTTATTAAAT GTGTATGATT TTTGTGTAAA 50536 .......... .......... .......... .......... .......... .......... 389 TTTCGATTGC AATATGCAAA CATATATGAA CATTGTATGA AAATGTATAA ATGTTGTACA 50476 .......... .......... .......... .......... .......... .......... 389 AATTATGAAT GTCATATTGA ACTTTGATAT ATGTAACAGA AACAAATGGT ATATATATGA 50416 .......... .......... .......... .......... .......... .......... 389 ACATTGTATT AATTCTATAT GAACATTTTA TGAATGACAG TAAAGTTCAA TGTATATATA 50356 | |||| ||| || ||| | ||||||| ||||||| | .......... .......... ....AGTTTA TGATTGGCAG TTTAGTTCAA TGTATATTTT 425 TAATGTATAA ACATTGTATG AATTATGAAT CTCATATCGA ACTTGGATAT ATGTAACAGA 50296 |||||||||| |||||||||| |||||||||| |||||| | | || ||||| |||||||||| TAATGTATAA ACATTGTATG AATTATGAAT GTCATATTG- ATTTTGATAT ATGTAACAGA 484 AACAAATGGT ACATAAATGA ACATTGTATG AATATTGTAT GAA 50253 ||| ||| | | ||| || | |||||||||| |||||||||| ||| AACCAATAAT ATATATATAA ACATTGTATG AATATTGTAT GAA 527 hqPGS_C08HBa0027D09.1-_SGN-E350862+ (50655 50615,50391 50253) ******************************************************************************** EST sequence 88 -strand 178 n (File: SGN-E308440-) 1 TTTTTTTTTT TGTACGAAAT CAAACTTTAT AAATGTCAAT GATAACAACT GCACTCAATA 61 AAACAAAACG TGTTTTTAAC ATTCAAAACA ACACAATAAC AAATGTAACA TTACGAAATC 121 ATTATTTTTG CACGGGATAA TTTGAACATG TCTTTCTATT GTGTCCAACT TGACTGCG Predicted gene structure (within gDNA segment 51042 to 48845): Exon 1 50111 49944 ( 168 n); cDNA 7 174 ( 168 n); score: 0.940 MATCH C08HBa0027D09.1- SGN-E308440- 0.940 168 0.944 C PGS_C08HBa0027D09.1-_SGN-E308440- (50111 49944) Alignment (genomic DNA sequence = upper lines): TTTTTTTACG AAACCAAATT TTATAAATAT CAATGATAAC AACTGCACTC AATAAAATAA 50052 ||||| |||| ||| |||| | |||||||| | |||||||||| |||||||||| ||||||| || TTTTTGTACG AAATCAAACT TTATAAATGT CAATGATAAC AACTGCACTC AATAAAACAA 66 AACGTGTTTC TAACATTCAA AACAACACAA TAACAAATGT AACATTACGA AATCATTGTT 49992 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AACGTGTTTT TAACATTCAA AACAACACAA TAACAAATGT AACATTACGA AATCATTATT 126 TTTGCACAGG ATAATTTAAA TATGTCTTTC TATTGTGTCC AACTTGAC 49944 ||||||| || ||||||| || ||||||||| |||||||||| |||||||| TTTGCACGGG ATAATTTGAA CATGTCTTTC TATTGTGTCC AACTTGAC 174 hqPGS_C08HBa0027D09.1-_SGN-E308440- (50111 49944) ******************************************************************************** EST sequence 155 -strand 660 n (File: SGN-E349296-) 1 AATATTATCA ATACATATTA TTCGCTATTA AGAGCTTACT ACGAATATCG TAAGAGAAAC 61 CATAACCTAC CTCCACCGAA GATTCGTGAT CAAGCAAGTG ATTTCCCAAG CTTTGTGTTT 121 TTTCCTCTCG TTCGATCCTC TTTCTCGTTC GACTTTCTCT CTCTTTCTCT TGTTCTTTCT 181 ATTTTCTTTA TTCAAACCCT CTTTCTTTTA CCCTAATTAG TATATAATTA AGAATAAAAT 241 ATGGCAATAA TAACCCACTA ATTAACTTAA GGTTACCTCT TTTAACCCCC AAGTAATTAG 301 ACTTATTAAC ATTAACCCAC TAACTTTATA ATTAAAGCAG GAATAGTCAA AAACGTCCCT 361 TAAAACAATT GAGGAATTCC GACTCAGACT GGGATTTACG CAGCCTGTGA CAGCCCGTTG 421 TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC GCAAGGTTCA GAGACTGGAT TTTCACTGAA 481 GACTCTGTGA TGGTCCATCA CGCCTGTGAC GGTCCGTCTT GCCATTCCGT TACGAAGTTC 541 AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTCCTAAG TGTTTTGAAA TGAGACCCTG 601 CGACGGTCCG TCGTGCCCAT GATGGTCCGT CGTGGGGTCC GTCATTTCTG CCAGTTTTTC Predicted gene structure (within gDNA segment 53623 to 51037): Exon 1 52937 52915 ( 23 n); cDNA 113 134 ( 22 n); score: 0.739 Intron 1 52914 52298 ( 617 n); Pd: 0.958 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 52297 51790 ( 508 n); cDNA 135 660 ( 526 n); score: 0.795 MATCH C08HBa0027D09.1- SGN-E349296- 0.795 531 0.805 C PGS_C08HBa0027D09.1-_SGN-E349296- (52937 52915,52297 51790) Alignment (genomic DNA sequence = upper lines): TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCGCT CCCTCATATT CATTATTCCT 52878 || | ||| | | |||| || ||| TTGTGTTTTT TCCTCTCGT- TCG....... .......... .......... .......... 134 CTTGTGTCGG TTCGTAACAC CCCGATCCCC TAATTCTACG TGTCGATTCG TGACACCCGA 52818 .......... .......... .......... .......... .......... .......... 134 TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC TAATTCTACG TGTCGATTCA 52758 .......... .......... .......... .......... .......... .......... 134 TGACACCCGA TCCCCTAAAT CTACGTGTCG GTTCGTGACA CCCGATCCCC TAATTCTACG 52698 .......... .......... .......... .......... .......... .......... 134 TGTCGGTTAG TGACACCCGA TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCAC 52638 .......... .......... .......... .......... .......... .......... 134 TAATATCATT CTGTAAATCA TCAAGCCTTC TTTATACCAA GGCATCCTCA ATCCCATTAC 52578 .......... .......... .......... .......... .......... .......... 134 TTTAATTCAT CAAGCCTTCT TCTATACCAA GGCATCATCA TTAATAATGT ATATTAAAGT 52518 .......... .......... .......... .......... .......... .......... 134 TTCTTTTCAA GATTTGGGAT TCAATATTTT CATCATGCTT ATCTTATCAC AATCACATAG 52458 .......... .......... .......... .......... .......... .......... 134 TCATATTCAT GCAAGCGTAC AATTAAGCAT ATAGCAGGGT TTACAATATT ATCAATACAT 52398 .......... .......... .......... .......... .......... .......... 134 ATCATTCTCT ATTAAGAGTT TACTACGAAT ATCGTAAGAG AAACCATAAC CTACCTCCAC 52338 .......... .......... .......... .......... .......... .......... 134 CGAAGAATTG AATCAAGCAA GAATTTTCCC AAAGCTTTGT TTCTCCCTTC TCGTTCGATT 52278 || | ||| |||||||| | .......... .......... .......... .......... ATCCTCTTTC TCGTTCGACT 154 CTCTCTCTCT CTCTCCTGTT CTTTCTATTT TCTTTATTCA AACCCTCTTT CTTTTACCCT 52218 ||||||||| |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTCTCT TTCTCTTGTT CTTTCTATTT TCTTTATTCA AACCCTCTTT CTTTTACCCT 214 AATTAGTATA TAATTAGGAA TAAAAGATGG CAATAATACC CCACTAATTA ACTTAGGGTT 52158 |||||||||| |||||| ||| ||||| |||| |||||||| | |||||||||| ||||| |||| AATTAGTATA TAATTAAGAA TAAAATATGG CAATAATAAC CCACTAATTA ACTTAAGGTT 274 ACCTCTTTTA ACCCCTCAAG -AATTTTAGT TATTAATATA AACCCACGAA ATCTATAATT 52099 |||||||||| ||||| |||| |||| | | |||||| || ||||||| || | ||||||| ACCTCTTTTA ACCCC-CAAG TAATTAGACT TATTAACATT AACCCACTAA CTTTATAATT 333 AAGGAAAGAA TAGTCCAAAA ACGTCCTTTA AAACTTCACC AGAAATCCGA CTCTGCCTGG 52039 || | | ||| |||| ||||| |||||| ||| |||| ||| ||||| ||| | |||| AAAGCAGGAA TAGT-CAAAA ACGTCCCTTA AAACAATTGA GGAATTCCGA CTCAGACTGG 392 GATTTGTGCA ACCTGTGACG GGCCGTCGTG CCTGCGACGG TCCGTCCTGC ATGTCGTCGC 51979 ||||| ||| |||||||| | |||| ||| |||||||||| |||||||||| | |||||||| GATTTACGCA GCCTGTGACA GCCCGTTGTG CCTGCGACGG TCCGTCCTGC AGGTCGTCGC 452 AAAGTTCAGA GAATGGATTT TCACT---GA -------A-- GT-C-T---- -CTGTGACGG 51938 || ||||||| || ||||||| ||||| || | || | | ||||||||| AAGGTTCAGA GACTGGATTT TCACTGAAGA CTCTGTGATG GTCCATCACG CCTGTGACGG 512 TCCGTCCTGC CATTCCGTCA CGAAGTTTAG AGAGTCGATT TTCAGTACCC AATTTCAGAT 51878 |||||| ||| |||||||| | ||||||| || |||||||||| |||||||||| |||||||||| TCCGTCTTGC CATTCCGTTA CGAAGTTCAG AGAGTCGATT TTCAGTACCC AATTTCAGAT 572 TTTCTAAGTG TTTTGAAACG AGACCCTGCG ACGGTCCGTC GTGCCCATGA CGTTCCGTCG 51818 || ||||||| |||||||| | |||||||||| |||||||||| |||||||||| | ||||||| TTCCTAAGTG TTTTGAAATG AGACCCTGCG ACGGTCCGTC GTGCCCATGA TGGTCCGTCG 632 TGGGGTCCGT CGCTTCTGCC AGTTTTTC 51790 |||||||||| | ||||||| |||||||| TGGGGTCCGT CATTTCTGCC AGTTTTTC 660 hqPGS_C08HBa0027D09.1-_SGN-E349296- (52937 52915,52297 51790) ******************************************************************************** EST sequence 290 +strand 548 n (File: SGN-E356257+) 1 AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 61 AATGACAGGA CGGACCATCA CAGGCGTGAC GGACCGTCAT AGATTGTTCA GTGGAAATTG 121 ACTCTCTGAC CCTTGCGACG ACCTGCAGGA CGGACCGTCA CAGTCACGAC GGCCCGTCAC 181 AGGTTGCGCA AATCCCAGGC AGAATCGGAT TTCCTTACAC GTTTTAAGGG ACGTTTTTGG 241 ACTATTCTTT CCTTAATTAT AGATTTCGTG GGTTTATATT AATAACTCAA ATTCTTGGGG 301 TTAAAAGAGG TAACCCTAAG TTAATTAGTG GGGTATTATT GCCATCTTTT ATTCTTAATT 361 ATATGTTAAT TTGGGGTAAA AGAAAGAGGG TTTTGAAACG AGACCCTGCG ATGGTCCGTC 421 GTGCCCATGA CGGTCCGTCG TGGGGTCCGT CGCTTCTGCC AGTTTTTCCA GAAATAAAGT 481 CTGCTGCTCA AAACGACTAA ACGGGTCGTT ACATTATTTG ACTCTATCAC TTTAATTTTC 541 TAGTTAAC Predicted gene structure (within gDNA segment 56358 to 50785): Exon 1 54095 54088 ( 8 n); cDNA 371 378 ( 8 n); score: 0.875 Intron 1 54087 53060 (1028 n); Pd: 0.233 (s: 0), Pa: 0.685 (s: 0) Exon 2 53059 53046 ( 14 n); cDNA 379 392 ( 14 n); score: 0.500 Intron 2 53045 51866 (1180 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.96) Exon 3 51865 51754 ( 112 n); cDNA 393 504 ( 112 n); score: 0.955 MATCH C08HBa0027D09.1- SGN-E356257+ 0.955 134 0.245 C PGS_C08HBa0027D09.1-_SGN-E356257+ (54095 54088,53059 53046,51865 51754) Alignment (genomic DNA sequence = upper lines): TTGGGGTGGC ATTTCCTCAT TTTGCACTTG TTCAGTTTCC CCATCCTCCC CTTCTCTTAT 54036 ||||||| TTGGGGTA.. .......... .......... .......... .......... .......... 378 TACCTCCTCA GTCAATGGAG GAGTCACTGC CCTAGTATCA GATGGGCTAG GTGCTCGTCC 53976 .......... .......... .......... .......... .......... .......... 378 TCTTCCCCTA GAGGACGTCC TCCCACGACC TCAACCACGG CCTCTTGCCG TTGTTCTTCC 53916 .......... .......... .......... .......... .......... .......... 378 TCGAGCCACA GCCCCAGGGG CTGGCTCAGT TGTTTCTTGT CTGGCCGGTG TCGCTGCTGG 53856 .......... .......... .......... .......... .......... .......... 378 CGCGGTCGTT GCTCTAGTTC TAACCATCTG CGAAATAGAG TGAAGATGGT CAGATACCAA 53796 .......... .......... .......... .......... .......... .......... 378 TTTGTATCAC CTAGATACCA ATTGGATCCA AGTAATAGCA CGAAAGAAAG AATGAAAGAG 53736 .......... .......... .......... .......... .......... .......... 378 TGAAATTTTC CTAAAGTCCT ATAGCCTCTC AAGGAAAAGT AAAGGCGTCC CCCTACCGTT 53676 .......... .......... .......... .......... .......... .......... 378 CCTTAAGACT CTACTAGACC TGTTCTTGTG TGATGAGACC AACGAACCTA ATGCTCTGAT 53616 .......... .......... .......... .......... .......... .......... 378 ACCAAGTTTG TCACGACCCA AATCCGGGCC GCGACTGGCA CCCACACTTA CGCTCCTATG 53556 .......... .......... .......... .......... .......... .......... 378 TGAGCGAACC AACCAATCTA AACCTTAACA TTTCAAGGTA ATATCAACAT AAAGTAATGC 53496 .......... .......... .......... .......... .......... .......... 378 GGAAGACTTA AACTCATTAA TAAAATCAAT AACTATTATT ATTCAACATC TATTATTCCC 53436 .......... .......... .......... .......... .......... .......... 378 CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTTAA ACTACTAATT CTAAGAGTTT 53376 .......... .......... .......... .......... .......... .......... 378 CTAAGAAGCT AAAAATACAT AAGAAGCTAG TCCATGCCGG GAGTTCAAGG CATCAAGACA 53316 .......... .......... .......... .......... .......... .......... 378 TGAAGGAGAA GATCCAGTCC AAGCTAGAAG CATTAGCTCA CCCTGAAGAT CCGGTGTGAC 53256 .......... .......... .......... .......... .......... .......... 378 GAAGACTGGC TAGAATTACT GTTGAGTTGA GGACGACGGC ACGTTTGTTG CACTCCACAA 53196 .......... .......... .......... .......... .......... .......... 378 ATAACAAGAA GAAAAACATA AAAGTAGGGG TCAGTACAAA ACACGGGTAC TGAGTAGATA 53136 .......... .......... .......... .......... .......... .......... 378 TCATCGGCCA ACTCAAAATA GAAAACAGTA TATACCAAGT AATATCATAA ACTCAACTAT 53076 .......... .......... .......... .......... .......... .......... 378 GATACTCAAC ATGTAGCAAC AACAAGCACT ATATCATTAA CAATTACCGT CAAGTCCACT 53016 || || || | .......... ......AAAG AAAGAGGGTT .......... .......... .......... 392 CACGAGGAAT CAAGCCCCAA TACCATACTC ATTTGGGAAT CATGTTCATT AGATTGAGTA 52956 .......... .......... .......... .......... .......... .......... 392 TATTAACATC AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC 52896 .......... .......... .......... .......... .......... .......... 392 CTCATATTCA TTATTCCTCT TGTGTCGGTT CGTAACACCC CGATCCCCTA ATTCTACGTG 52836 .......... .......... .......... .......... .......... .......... 392 TCGATTCGTG ACACCCGATC CCCTAATTCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 52776 .......... .......... .......... .......... .......... .......... 392 ATTCTACGTG TCGATTCATG ACACCCGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC 52716 .......... .......... .......... .......... .......... .......... 392 CGATCCCCTA ATTCTACGTG TCGGTTAGTG ACACCCGATC CCCTAATTCT ACGTGTCGGT 52656 .......... .......... .......... .......... .......... .......... 392 TCGTGACACC CGATCCACTA ATATCATTCT GTAAATCATC AAGCCTTCTT TATACCAAGG 52596 .......... .......... .......... .......... .......... .......... 392 CATCCTCAAT CCCATTACTT TAATTCATCA AGCCTTCTTC TATACCAAGG CATCATCATT 52536 .......... .......... .......... .......... .......... .......... 392 AATAATGTAT ATTAAAGTTT CTTTTCAAGA TTTGGGATTC AATATTTTCA TCATGCTTAT 52476 .......... .......... .......... .......... .......... .......... 392 CTTATCACAA TCACATAGTC ATATTCATGC AAGCGTACAA TTAAGCATAT AGCAGGGTTT 52416 .......... .......... .......... .......... .......... .......... 392 ACAATATTAT CAATACATAT CATTCTCTAT TAAGAGTTTA CTACGAATAT CGTAAGAGAA 52356 .......... .......... .......... .......... .......... .......... 392 ACCATAACCT ACCTCCACCG AAGAATTGAA TCAAGCAAGA ATTTTCCCAA AGCTTTGTTT 52296 .......... .......... .......... .......... .......... .......... 392 CTCCCTTCTC GTTCGATTCT CTCTCTCTCT CTCCTGTTCT TTCTATTTTC TTTATTCAAA 52236 .......... .......... .......... .......... .......... .......... 392 CCCTCTTTCT TTTACCCTAA TTAGTATATA ATTAGGAATA AAAGATGGCA ATAATACCCC 52176 .......... .......... .......... .......... .......... .......... 392 ACTAATTAAC TTAGGGTTAC CTCTTTTAAC CCCTCAAGAA TTTTAGTTAT TAATATAAAC 52116 .......... .......... .......... .......... .......... .......... 392 CCACGAAATC TATAATTAAG GAAAGAATAG TCCAAAAACG TCCTTTAAAA CTTCACCAGA 52056 .......... .......... .......... .......... .......... .......... 392 AATCCGACTC TGCCTGGGAT TTGTGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC 51996 .......... .......... .......... .......... .......... .......... 392 GTCCTGCATG TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC TGTGACGGTC 51936 .......... .......... .......... .......... .......... .......... 392 CGTCCTGCCA TTCCGTCACG AAGTTTAGAG AGTCGATTTT CAGTACCCAA TTTCAGATTT 51876 .......... .......... .......... .......... .......... .......... 392 TCTAAGTGTT TTGAAACGAG ACCCTGCGAC GGTCCGTCGT GCCCATGACG TTCCGTCGTG 51816 |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| .......... TTGAAACGAG ACCCTGCGAT GGTCCGTCGT GCCCATGACG GTCCGTCGTG 442 GGGTCCGTCG CTTCTGCCAG TTTTTCCAGA ATTGAAGTCT GTTGCTCAAA ACGACTAAAC 51756 |||||||||| |||||||||| |||||||||| | | |||||| | |||||||| |||||||||| GGGTCCGTCG CTTCTGCCAG TTTTTCCAGA AATAAAGTCT GCTGCTCAAA ACGACTAAAC 502 GG 51754 || GG 504 hqPGS_C08HBa0027D09.1-_SGN-E356257+ (51865 51754) ******************************************************************************** EST sequence 233 +strand 686 n (File: SGN-E241789+) 1 ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 61 CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 121 GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 181 AGTACAAACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 241 ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 301 ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 361 GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 421 TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA CGTGTCGGTT CGTGACACCC 481 GATCCCCTAA TACTACGTGT CGGTTCGTTA CACCCGATCT CCTAATACTA CGTGCCGATT 541 CGTGACACCC GATCCATTAA TACTATGTGT CGGTTCGTGA CACCCGATCC ATTAATACTA 601 CGTGTCGGTT CGTGACACCC GATCCCCTAA CCTCATTCTT TTAGTTCATC AAGCCTTCTT 661 TTATACCAAG ACATCATCAT TAACAA Predicted gene structure (within gDNA segment 55383 to 50384): Exon 1 53342 52915 ( 428 n); cDNA 1 425 ( 425 n); score: 0.782 Intron 1 52914 52839 ( 76 n); Pd: 0.958 (s: 0.64), Pa: 0.000 (s: 0.85) Exon 2 52838 52626 ( 213 n); cDNA 426 639 ( 214 n); score: 0.871 Intron 2 52625 52578 ( 48 n); Pd: 0.851 (s: 0.88), Pa: 0.000 (s: 0.91) Exon 3 52577 52531 ( 47 n); cDNA 640 686 ( 47 n); score: 0.915 MATCH C08HBa0027D09.1- SGN-E241789+ 0.811 688 1.003 C PGS_C08HBa0027D09.1-_SGN-E241789+ (53342 52915,52838 52626,52577 52531) Alignment (genomic DNA sequence = upper lines): ATGCCGGGAG TTCAAGG-CA TCAAGACATG AAGGAGA-AG -ATCCAGTCC AAGCTAGAAG 53286 ||| | | ||||||| || |||||||||| || |||| || ||||||||| |||||| | ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 60 CATTAGCTCA CCCTGAAGAT CCGGTGTGAC GAAGACTGGC TAGAATTACT GTTGAGTTGA 53226 || ||||||| ||||||| || | | |||| ||||||||| |||| || | |||||||||| CAATAGCTCA CCCTGAA-AT CTGACGTGAT GAAGACTGGT TAGAGTTGCG GTTGAGTTGA 119 GGACGACGGC ACGTTTGTTG CACTCCACAA ATAACAAGAA GAAAAACATA AAAGTAGGGG 53166 |||||||| ||||||| || |||||||||| |||||| || | |||||||| |||||||||| AGACGACGGT ACGTTTGCTG CACTCCACAA TTAACAAAAA G-AAAACATA AAAGTAGGGG 178 TCAGTACAAA ACACGGGTAC TGAGTAGATA TCATCGGCCA ACTCAAAATA GAAAACAGTA 53106 ||||||| || ||||| |||| |||||||||| |||||||||| ||||| |||| || |||| || TCAGTAC-AA ACACGAGTAC TGAGTAGATA TCATCGGCCA ACTCAGAATA GAGAACAATA 237 TATACCAAGT AATATCATAA ACTCAACTAT GATACTCAAC ATGTAGCAAC AACAAGCACT 53046 |||| ||| | |||| |||| | ||||| || | ||| ||| | || |||| |||||| || TATATCAAAT AATAAAATAA AATCAACCAT AACACTTAAC AGGTGACAAC AACAAGTACC 297 AT-ATCATTA ACAATTACCG TCAAGTCCAC TCACGAGGAA TCAAGCCCCA ATACCATACT 52987 || | |||| | ||| |||| || | ||||| ||||||| | | |||||||| ATAACCATTG GGCACAACC- -CAAGAACAT CTATGAGGAC TCAAGCCTCC ACACCATACT 355 CATTTGGGAA TCATGTTCAT TAGATTGAGT ATATTAACAT CAAGATTCAT TA-TCTTTAT 52928 |||||||||| || |||||| || ||||||| | |||||||| | ||||| | || || | CATTTGGGAA ACAGGTTCAT TAAATTGAGT ACATTAACAT --A-ATTCAA GATTCATTCT 412 TTCTCTTGTG TCGGTACGTG ACACTCCGCT CCCTCATATT CATTATTCCT CTTGTGTCGG 52868 || | | | | TTTTACTATC GTG....... .......... .......... .......... .......... 425 TTCGTAACAC CCCGATCCCC TAATTCTACG TGTCGATTCG TGACAC-CCG ATCCCCTAAT 52809 | ||||| || ||| || ||| |||||||||| .......... .......... .........G TGTCGGAACG TGATACTCCG ATCCCCTAAT 456 TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGATTC ATGACACCCG 52749 ||||||||| |||||||||| |||||||||| ||||| |||| |||||| ||| | ||||||| GCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATACTAC GTGTCGGTTC GTTACACCCG 516 ATCCCCTAAA TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTA 52689 ||| ||||| ||||||| | | |||||||| ||||||||| |||| ||| ||||||||| ATCTCCTAAT ACTACGTGCC GATTCGTGAC ACCCGATCCA TTAATACTAT GTGTCGGTTC 576 GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCA CTAATATCAT 52629 |||||||||| |||| |||| ||||||||| |||||||||| ||||||||| |||| |||| GTGACACCCG ATCCATTAAT ACTACGTGTC GGTTCGTGAC ACCCGATCCC CTAACCTCAT 636 TCTGTAAATC ATCAAGCCTT CTTTATACCA AGGCATCCTC AATCCCATTA CTTTAATTCA 52569 ||| |||| |||| TCT....... .......... .......... .......... .......... .TTTAGTTCA 648 TCAAGCCTTC TTCTATACCA AGGCATCATC ATTAATAA 52531 |||||||||| || ||||||| || ||||||| ||||| || TCAAGCCTTC TTTTATACCA AGACATCATC ATTAACAA 686 hqPGS_C08HBa0027D09.1-_SGN-E241789+ (53342 52915,52838 52626,52577 52531) ******************************************************************************** EST sequence 119 -strand 548 n (File: SGN-E356257-) 1 GTTAACTAGA AAATTAAAGT GATAGAGTCA AATAATGTAA CGACCCGTTT AGTCGTTTTG 61 AGCAGCAGAC TTTATTTCTG GAAAAACTGG CAGAAGCGAC GGACCCCACG ACGGACCGTC 121 ATGGGCACGA CGGACCATCG CAGGGTCTCG TTTCAAAACC CTCTTTCTTT TACCCCAAAT 181 TAACATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 241 TCTTTTAACC CCAAGAATTT GAGTTATTAA TATAAACCCA CGAAATCTAT AATTAAGGAA 301 AGAATAGTCC AAAAACGTCC CTTAAAACGT GTAAGGAAAT CCGATTCTGC CTGGGATTTG 361 CGCAACCTGT GACGGGCCGT CGTGACTGTG ACGGTCCGTC CTGCAGGTCG TCGCAAGGGT 421 CAGAGAGTCA ATTTCCACTG AACAATCTAT GACGGTCCGT CACGCCTGTG ATGGTCCGTC 481 CTGTCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 541 AGTGTTTT Predicted gene structure (within gDNA segment 54750 to 51264): Exon 1 52238 51927 ( 312 n); cDNA 156 466 ( 311 n); score: 0.893 MATCH C08HBa0027D09.1- SGN-E356257- 0.893 312 0.569 C PGS_C08HBa0027D09.1-_SGN-E356257- (52238 51927) Alignment (genomic DNA sequence = upper lines): AAACCCTCTT TCTTTTACC- CTAATTAGTA TATAATTAGG AATAAAAGAT GGCAATAATA 52180 |||||||||| ||||||||| | ||||| | |||||||| | |||||||||| |||||||||| AAACCCTCTT TCTTTTACCC CAAATTAACA TATAATTAAG AATAAAAGAT GGCAATAATA 215 CCCCACTAAT TAACTTAGGG TTACCTCTTT TAACCCCTCA AGAATTTTAG TTATTAATAT 52120 |||||||||| |||||||||| |||||||||| ||| ||| || ||||||| || |||||||||| CCCCACTAAT TAACTTAGGG TTACCTCTTT TAA-CCC-CA AGAATTTGAG TTATTAATAT 273 AAACCCACGA AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCTTT AAAACTTCAC 52060 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||| | AAACCCACGA AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCCTT AAAACGTGTA 333 CAGAAATCCG ACTCTGCCTG GGATTTGTGC AACCTGTGAC GGGCCGTCGT GCCTGCGACG 52000 |||||||| | |||||||| ||||||| || |||||||||| |||||||||| | ||| |||| AGGAAATCCG ATTCTGCCTG GGATTTGCGC AACCTGTGAC GGGCCGTCGT GACTGTGACG 393 GTCCGTCCTG CATGTCGTCG CAAAGTTCAG AGAATGGATT TTCACTGAAG TCTCTGTGAC 51940 |||||||||| || ||||||| ||| | |||| ||| | ||| | ||||||| ||| |||| GTCCGTCCTG CAGGTCGTCG CAAGGGTCAG AGAGTCAATT TCCACTGAAC AATCTATGAC 453 GGTCCGTCCT GCC 51927 |||||||| ||| GGTCCGTCAC GCC 466 hqPGS_C08HBa0027D09.1-_SGN-E356257- (52238 51927) ******************************************************************************** EST sequence 153 -strand 725 n (File: SGN-E546548-) 1 GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 61 TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCCATCAAG 121 CCTTCTTTTA CACTAAGGCA TCATCATTCT CATTATATAA TTTATCAAGC CTTCTTTCAT 181 ACTAAGGCAT CATCATTCTC ATTATATAAT ATATCAAGCG AATTAGGGTT CTTTCAAGAT 241 TTGGGATTCA ATTGCTTCAT CATGCTTTGT TAATTCATCG CAATTTCATA ATCATAATCA 301 TGCAAGCATA CAACTTAAGC ACATAGCAGG GTTTACAATA CTATCAACAC ATAATATTCA 361 CTATTAAGAG TTCACTACGA ATATCGTAAC ATAAACCATA ACCTACCTCC ACCGAAGAAT 421 TGAATCAACA AGCTATCTTC TCAAAATCCT TGCTATCCTC TTCGTTTCTC TCTCTCTACT 481 CGTTCGTTTC TCCTCTCTTT CTGTTCTTTT CTTTTGTTTT GTTTTATTCA AACCCTCCTT 541 CTTTTTACCC TAATTAAAAG TATAATTAAG TGTAAAGGAG GACAATAAAA CCCACTAATT 601 AACTTAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACC TATTAATATT AACCCTCAAT 661 CTTTATAATT AAGGAAAGAA TAGTCCAAAA CGACCCCTAA AACGTGTAGA GGAATCCTAT 721 TTTGC Predicted gene structure (within gDNA segment 56716 to 50553): Exon 1 52698 52562 ( 137 n); cDNA 83 220 ( 138 n); score: 0.657 Intron 1 52561 52526 ( 36 n); Pd: 0.000 (s: 0.77), Pa: 0.000 (s: 0.73) Exon 2 52525 52043 ( 483 n); cDNA 221 725 ( 505 n); score: 0.705 MATCH C08HBa0027D09.1- SGN-E546548- 0.694 620 0.855 C PGS_C08HBa0027D09.1-_SGN-E546548- (52698 52562,52525 52043) Alignment (genomic DNA sequence = upper lines): GTGTCGGTTA GTGACACCCG ATCCCCTAAT TCTACGTGTC GG-TTCGTGA CACCCGATCC 52640 || ||| ||| |||||| |||||||||| | | | | || | | | | GTACCGGAAC GTGGCACCCG ATCCCCTAAT CCATCAAGCC TTCTTTTACA CTAAGGCATC 142 ACTAATATCA TTCTGTAAAT CATCAAGCCT TCTTT-ATAC CAAGGCATCC TCAATCCCAT 52581 | | | ||| || | ||| | ||||||||| ||||| |||| |||||||| ||| || ||| ATCATTCTCA TTATATAATT TATCAAGCCT TCTTTCATAC TAAGGCATCA TCATTCTCAT 202 TACTTTAATT CATCAAGCCT TCTTCTATAC CAAGGCATCA TCATTAATAA TGTATATTAA 52521 || | |||| ||||||| | | | TA-TATAATA TATCAAGCG. .......... .......... .......... .....AATTA 225 AGTTTCTTTT CAAGATTTGG GATTCAATAT TTTCATCATG C-TT-ATC-T T-ATCACAAT 52465 | ||| ||| |||||||||| |||||||| ||||||||| | || | | | ||| |||| GGGTTC-TTT CAAGATTTGG GATTCAATTG CTTCATCATG CTTTGTTAAT TCATCGCAAT 284 CACATAGTCA TATTCATGCA AGCGTACAA- TTAAGCATAT AGCAGGGTTT ACAATATTAT 52406 |||| ||| || ||||||| ||| ||||| ||||||| || |||||||||| |||||| ||| TTCATAATCA TAATCATGCA AGCATACAAC TTAAGCACAT AGCAGGGTTT ACAATACTAT 344 CAATACATAT CATTCTCTAT TAAGAGTTTA CTACGAATAT CGTAAGAGAA ACCATAACCT 52346 ||| ||||| |||| |||| |||||||| | |||||||||| ||||| | || |||||||||| CAACACATAA TATTCACTAT TAAGAGTTCA CTACGAATAT CGTAACATAA ACCATAACCT 404 ACCTCCACCG AAGAATTGAA TCAAGCAAG- AATTTTC-CC AAA-----G- ----CT-TT- 52300 |||||||||| |||||||||| |||| |||| || ||| | ||| | || || ACCTCCACCG AAGAATTGAA TCAA-CAAGC TATCTTCTCA AAATCCTTGC TATCCTCTTC 463 GTTTCTC-C- CT-T-CTCGT TCGATTCT-C TCTCTCTCTC TCCTGTTCTT TCTATTTTCT 52245 ||||||| | || | ||||| ||| |||| | ||||| ||| | || ||||| | ||| | GTTTCTCTCT CTCTACTCGT TCGTTTCTCC TCTCTTTCTG TTCTTTTCTT TTGTTTTGTT 523 TTATTCAAAC CCTCTTTC-T TTTACCCTAA TTAGTA-TAT AATTAGGAAT AAAAGATGGC 52187 |||||||||| |||| ||| | |||||||||| ||| | ||| ||||| | | ||| || | | TTATTCAAAC CCTCCTTCTT TTTACCCTAA TTAAAAGTAT AATTAAGTGT AAAGGAGGAC 583 AATAATACCC CACTAATTAA CTTAGGGTTA CCTCTTTTAA CCCCTCAAG- AATTTTAGTT 52128 ||||| | || |||||||||| |||| ||||| |||||||||| |||| |||| |||| | | AATAA-AACC CACTAATTAA CTTAAGGTTA CCTCTTTTAA CCCC-CAAGT AATTAGACCT 641 ATTAATATAA ACCCACGAAA TCTATAATTA AGGAAAGAAT AGTCCAAAAA CGTCCTTTAA 52068 |||||||| | |||| | | | |||||||| |||||||||| ||||| |||| || || ||| ATTAATATTA ACCCTCAATC TTTATAATTA AGGAAAGAAT AGTCC-AAAA CGACCCCTAA 700 AACTTCACCA GAAATCCGAC TCTGC 52043 ||| | | | ||||| | | ||| AACGTGTAGA GGAATCCTAT TTTGC 725 hqPGS_C08HBa0027D09.1-_SGN-E546548- (52525 52043) ******************************************************************************** EST sequence 2 -strand 605 n (File: SGN-E347579-) 1 ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 61 GTGACACCTG ATCCCCTAAT CTACGTGCCG GTTCGTGACA CCCGATCCCC TAATTCTACG 121 TGCCAGTTCG TGACACCCGA TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC 181 TGCATGTGTC GGTACGTGAC ACTCCGATCC ACTAATATCA TTCTGTAAAT CATCAGGCCT 241 TCTCTATACC AAGGCATCAT CAATCCCATT ACTTTTATTC ATCAAGCCTT CTTCTATACC 301 AAGGCATCAT CATTAATAAG AGATTAGATT TTTATCAAGA TTTGGGATTC AATAACTTCA 361 TCATGCTTAA TATAATCACA ATTATATAAT CACGTTCATG CATGCATACA ATTAAGCATA 421 TAGCAGGGTT TACAATACTA CCAATACATA TCATTCTCTA TTAAGAGTTT ACTATGAAAG 481 CATGAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTTTTCTCC 541 AAGCTTTGTT TCTCCCTTCT CGTTCGATTC TTCCTCTCTC TCTTGTTCTT TCTATTTTCT 601 TTATT Predicted gene structure (within gDNA segment 53288 to 51640): Exon 1 52853 52240 ( 614 n); cDNA 1 605 ( 605 n); score: 0.884 MATCH C08HBa0027D09.1- SGN-E347579- 0.884 614 1.015 C PGS_C08HBa0027D09.1-_SGN-E347579- (52853 52240) Alignment (genomic DNA sequence = upper lines): ATCCCCTAAT TCTACGTGTC GATTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 52794 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 60 GTGACACCCG ATCCCCTAAT TCTACGTGTC GATTCATGAC ACCCGATCCC CTAAATCTAC 52734 |||||||| | ||||||||| |||||||| | | ||| |||| |||||||||| |||| ||||| GTGACACCTG ATCCCCTAA- TCTACGTGCC GGTTCGTGAC ACCCGATCCC CTAATTCTAC 119 GTGTCGGTTC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTAGTGAC ACCCGATCCC 52674 ||| | |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GTGCCAGTTC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC 179 CTAATTCTAC GTGTCGGTTC GTGACAC-CC GATCCACTAA TATCATTCTG TAAATCATCA 52615 | | | | |||||||| | ||||||| || |||||||||| |||||||||| |||||||||| C---TGC-AT GTGTCGGTAC GTGACACTCC GATCCACTAA TATCATTCTG TAAATCATCA 235 AGCCTTCTTT ATACCAAGGC ATCCTCAATC CCATTACTTT AATTCATCAA GCCTTCTTCT 52555 ||||||| | |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| GGCCTTCTCT ATACCAAGGC ATCATCAATC CCATTACTTT TATTCATCAA GCCTTCTTCT 295 ATACCAAGGC ATCATCATTA ATAATGTATA TTAAAGTTTC TTTTCAAGAT TTGGGATTCA 52495 |||||||||| |||||||||| |||| | | | ||| | ||| || ||||||| |||||||||| ATACCAAGGC ATCATCATTA ATAA-G-AGA TTAGA-TTT- TTATCAAGAT TTGGGATTCA 351 ATATTTTCAT CATGCTT-AT CTTATCACAA TCACATAGTC ATATTCATGC AAGCGTACAA 52436 ||| ||||| ||||||| || | ||||||| | | ||| || | ||||||| | || ||||| ATAACTTCAT CATGCTTAAT ATAATCACAA TTATATAATC ACGTTCATGC ATGCATACAA 411 TTAAGCATAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT TAAGAGTTTA 52376 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TTAAGCATAT AGCAGGGTTT ACAATACTAC CAATACATAT CATTCTCTAT TAAGAGTTTA 471 CTACGAATAT CGTAAGAGAA ACCATAACCT ACCTCCACCG AAGAATTG-A ATCAAGCAAG 52317 ||| ||| | | | || || |||||||||| |||||||||| |||| | | |||||||||| CTATGAA-A- -GCATGA-AA ACCATAACCT ACCTCCACCG AAGATTAGTG ATCAAGCAAG 527 --AA-TTTTC CCAAAGCTTT GTTTCTCCCT TCTCGTTCGA TTCTCTCTCT CTCTCTCCTG 52260 || ||||| | ||||||| |||||||||| |||||||||| |||| || || ||||||| || CAAATTTTTC TCCAAGCTTT GTTTCTCCCT TCTCGTTCGA TTCT-TC-CT CTCTCTCTTG 585 TTCTTTCTAT TTTCTTTATT 52240 |||||||||| |||||||||| TTCTTTCTAT TTTCTTTATT 605 hqPGS_C08HBa0027D09.1-_SGN-E347579- (52853 52240) ******************************************************************************** EST sequence 157 -strand 717 n (File: SGN-E349726-) 1 TTATGTTCAT TAGATTGAGT ATATAACATC TTTCAAGATT CATTGTCTTT ATTTCTCTTG 61 TGTCGGTACG TGACATTCCG CTCCNTCATA TTCATTAATC TTCTTGTGTC GGTACGTGAT 121 ACTCTGATCC CCTAAATCTA CGTGTCGGAA CGTGACACTC CGATCCCCTA AATCTACGTG 181 TCGGTTCGTG ACACCTGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 241 AATCTACGTG TCGGTTCGTG ACACCCGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC 301 CGATCCCCTA ATCTATGTGT TGGTTCGTGA CACCTGATCC CTTAATCTAC GTGTCGGTTT 361 GTGACACCCG ATCCCCTAAT TCTACGTGTC AGTTCGTGAC ACCCGATCCC CTAATCTCAT 421 TCTATCAATT CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCAATCTCAT TACTTTAGTT 481 CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCATTAAAAA GAGATTAGGT TTTTACAAGA 541 TTTGGGATTC AATAACTTCA TCATGCTTAT ATAATAACAA TTATATAGTT ACATTCATGC 601 AAGCATACAA TTAAGCACAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT 661 TAAGAGTTTA CTACGAATAT CGTAAGAGAA ACAATAACCT ACCTCCACCG AAGACTA Predicted gene structure (within gDNA segment 57041 to 51702): Exon 1 52920 52332 ( 589 n); cDNA 142 714 ( 573 n); score: 0.881 MATCH C08HBa0027D09.1- SGN-E349726- 0.881 589 0.821 C PGS_C08HBa0027D09.1-_SGN-E349726- (52920 52332) Alignment (genomic DNA sequence = upper lines): GTGTCGGTAC GTGACACTCC GCTCCCTCAT ATTCATTATT CCTCTTGTGT CGGTTCGTAA 52861 ||||||| || |||||||||| | |||| | | | | | | || |||| |||||||| | GTGTCGGAAC GTGACACTCC GATCCC-C-T A---A--A-T -CT-ACGTGT CGGTTCGTGA 191 CACCCCGATC CCCTAATTCT ACGTGTCGAT TCGTGACACC CGATCCCCTA ATTCTACGTG 52801 || || |||| |||||| ||| |||||||| | |||||||||| |||||||||| | |||||||| CA-CCTGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC CGATCCCCTA AATCTACGTG 250 TCGGTTCGTG ACACCCGATC CCCTAATTCT ACGTGTCGAT TCATGACACC CGATCCCCTA 52741 |||||||||| |||||||||| |||||| ||| |||||||| | || ||||||| ||||||||| TCGGTTCGTG ACACCCGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC CGATCCCCT- 309 AATCTACGTG TCGGTTCGTG ACACCCGATC CCCTAATTCT ACGTGTCGGT TAGTGACACC 52681 |||||| ||| | |||||||| ||||| |||| || ||| ||| |||||||||| | |||||||| AATCTATGTG TTGGTTCGTG ACACCTGATC CCTTAA-TCT ACGTGTCGGT TTGTGACACC 368 CGATCCCCTA ATTCTACGTG TCGGTTCGTG ACACCCGATC CACTAATATC ATTCTGT-AA 52622 |||||||||| |||||||||| || ||||||| |||||||||| | ||||| || ||||| | || CGATCCCCTA ATTCTACGTG TCAGTTCGTG ACACCCGATC CCCTAATCTC ATTCTATCAA 428 ATCATCAAGC CTTCT-TTAT ACCAAGGCAT CCTCAATCCC ATTACTTTAA TTCATCAAGC 52563 ||||||||| ||||| | |||||||||| | |||||| | ||||||||| |||||||||| TTCATCAAGC CTTCTCCCTT ACCAAGGCAT CATCAATCTC ATTACTTTAG TTCATCAAGC 488 CTTCTTCTAT ACCAAGGCAT CATCATTAAT AATGTATATT AAAGTTTCTT TTCAAGATTT 52503 ||||| | | |||||||||| ||||||||| || | | ||| || || || | |||||||| CTTCTCCCTT ACCAAGGCAT CATCATTAA- AAAG-AGATT --AGGTT-TT TACAAGATTT 543 GGGATTCAAT ATTTTCATCA TGCTTATCTT ATCACAATCA CATAGTCATA TTCATGCAAG 52443 |||||||||| | ||||||| ||||||| | || ||||| | ||||| | | |||||||||| GGGATTCAAT AACTTCATCA TGCTTATATA ATAACAATTA TATAGTTACA TTCATGCAAG 603 CGTACAATTA AGCATATAGC AGGGTTTACA ATATTATCAA TACATATCAT TCTCTATTAA 52383 | |||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACAATTA AGCACATAGC AGGGTTTACA ATATTATCAA TACATATCAT TCTCTATTAA 663 GAGTTTACTA CGAATATCGT AAGAGAAACC ATAACCTACC TCCACCGAAG A 52332 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| | GAGTTTACTA CGAATATCGT AAGAGAAACA ATAACCTACC TCCACCGAAG A 714 hqPGS_C08HBa0027D09.1-_SGN-E349726- (52920 52332) ******************************************************************************** EST sequence 133 -strand 402 n (File: SGN-E357559-) 1 TGTGTTGGTT CGTGACACCT GATCCCTTAA TCTACGTGTC GGTTTGTGAC ACCCGATCCC 61 CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA 121 AGCCTTCTCC CTTACCAAGG CATCATCAAT CTCATTACTT TAGTTCATCA AGCCTTCTCC 181 CTTACCAAGG CATCATCATT AAAAAGAGAT TAGGTTTTTA CAAGATTTGG GATTCAATAA 241 CTTCATCATG CTTATATAAT AACAATTATA TAGTTACATT CATGCAAGCA TACAATTAAG 301 CACATAGCAG GGTTTACAAT ATTATCAATA CATATCATTC TCTATTAAGA GTTTACTACG 361 AATATCGTAA GAGAAACAAT AACCTACCTC CACCGAAGAC TA Predicted gene structure (within gDNA segment 53891 to 51702): Exon 1 52733 52332 ( 402 n); cDNA 2 399 ( 398 n); score: 0.888 MATCH C08HBa0027D09.1- SGN-E357559- 0.888 402 1.000 C PGS_C08HBa0027D09.1-_SGN-E357559- (52733 52332) Alignment (genomic DNA sequence = upper lines): GTGTCGGTTC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTAGTGAC ACCCGATCCC 52674 |||| ||||| |||||||| | ||||| ||| |||||||||| |||| ||||| |||||||||| GTGTTGGTTC GTGACACCTG ATCCCTTAA- TCTACGTGTC GGTTTGTGAC ACCCGATCCC 60 CTAATTCTAC GTGTCGGTTC GTGACACCCG ATCCACTAAT ATCATTCTGT -AAATCATCA 52615 |||||||||| ||||| |||| |||||||||| |||| ||||| ||||||| | || |||||| CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA 120 AGCCTTCT-T TATACCAAGG CATCCTCAAT CCCATTACTT TAATTCATCA AGCCTTCTTC 52556 |||||||| |||||||| |||| ||||| | |||||||| || ||||||| |||||||| | AGCCTTCTCC CTTACCAAGG CATCATCAAT CTCATTACTT TAGTTCATCA AGCCTTCTCC 180 TATACCAAGG CATCATCATT AATAATGTAT ATTAAAGTTT CTTTTCAAGA TTTGGGATTC 52496 |||||||| |||||||||| || || | | ||| || || ||| ||||| |||||||||| CTTACCAAGG CATCATCATT AA-AAAG-AG ATT--AGGTT -TTTACAAGA TTTGGGATTC 235 AATATTTTCA TCATGCTTAT CTTATCACAA TCACATAGTC ATATTCATGC AAGCGTACAA 52436 |||| |||| |||||||||| | || |||| | | ||||| | |||||||| |||| ||||| AATAACTTCA TCATGCTTAT ATAATAACAA TTATATAGTT ACATTCATGC AAGCATACAA 295 TTAAGCATAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT TAAGAGTTTA 52376 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCACAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT TAAGAGTTTA 355 CTACGAATAT CGTAAGAGAA ACCATAACCT ACCTCCACCG AAGA 52332 |||||||||| |||||||||| || ||||||| |||||||||| |||| CTACGAATAT CGTAAGAGAA ACAATAACCT ACCTCCACCG AAGA 399 hqPGS_C08HBa0027D09.1-_SGN-E357559- (52733 52332) ******************************************************************************** EST sequence 299 +strand 337 n (File: SGN-E357033+) 1 ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 61 AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 121 GTCACGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATCATGTTCA 181 TTAGATTTAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGACGGAA 241 CATGACATTC CGCTCCCTCA TATTCATTAA TCCTCTTGTG TGAACACATG ACACTCCGAT 301 CCCCTAAATC TACATGACAG TTTCATGAAC GCTATCC Predicted gene structure (within gDNA segment 54323 to 51593): Exon 1 53147 52815 ( 333 n); cDNA 1 337 ( 337 n); score: 0.854 MATCH C08HBa0027D09.1- SGN-E357033+ 0.854 333 0.988 C PGS_C08HBa0027D09.1-_SGN-E357033+ (53147 52815) Alignment (genomic DNA sequence = upper lines): ACTGAGTAGA TATCATCGGC CAACTCAAAA TAGAAAACAG TATATACCAA GTAATATCAT 53088 ||||| |||| |||||||| | |||||||||| |||||| || |||||| ||| | | |||||| ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 60 AAACTCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 53028 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 120 GTCAAGTCCA CTCACGAGGA ATCAAGCCCC AATACCATAC TCATTTGGGA ATCATGTTCA 52968 |||| || || | || ||||| ||||||| | |||||||||| |||||||||| |||||||||| GTCACGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATCATGTTCA 180 TTAGATTGAG TATATTAACA ----TCAAGA TTCATTATCT TTATTTCTCT TGTGTCGGTA 52912 ||||||| || |||||||||| |||||| |||||||||| |||||||||| |||| ||| | TTAGATTTAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGACGGAA 240 CGTGACACTC CGCTCCCTCA TATTCATTAT TCCTCTTGTG TCGGTTCGTA ACACCCCGAT 52852 | ||||| || |||||||||| ||||||||| |||||||||| | | | |||| ||||| CATGACATTC CGCTCCCTCA TATTCATTAA TCCTCTTGTG TGAACACATG ACACTCCGAT 300 CCCCTAATTC TACGTGTC-G ATTCGTGACA CCCGATCC 52815 ||||||| || ||| || | | ||| ||| | | | |||| CCCCTAAATC TACATGACAG TTTCATGA-A CGCTATCC 337 hqPGS_C08HBa0027D09.1-_SGN-E357033+ (53147 52815) ******************************************************************************** EST sequence 136 -strand 239 n (File: SGN-E391780-) 1 ATCAACAAAT ACTATATCAT TAACAATTAC CGTCAAGTTC ACACATGAGG ACTCAAGCCT 61 CAATACCATA CTCATTTGGG AATCATGTTC ATTAGATTGA GTATATTAAC ATCTTTCAAG 121 ATTCATTATC TTTATTTCTC TTGTGTCGGT ACGTGACACT CCGCTCCCTC AATATTCATT 181 AATCCTCTTG TGTCGGTACG TGACACTCCG ATCCCCTAAA TCTATATGTC GGTTTGTGA Predicted gene structure (within gDNA segment 54208 to 51612): Exon 1 53056 52825 ( 232 n); cDNA 3 239 ( 237 n); score: 0.877 MATCH C08HBa0027D09.1- SGN-E391780- 0.877 232 0.971 C PGS_C08HBa0027D09.1-_SGN-E391780- (53056 52825) Alignment (genomic DNA sequence = upper lines): CAACAAGCAC TATATCATTA ACAATTACCG TCAAGTCCAC TCACGAGGAA TCAAGCCCCA 52997 |||||| || |||||||||| |||||||||| |||||| ||| || ||||| ||||||| || CAACAAATAC TATATCATTA ACAATTACCG TCAAGTTCAC ACATGAGGAC TCAAGCCTCA 62 ATACCATACT CATTTGGGAA TCATGTTCAT TAGATTGAGT ATATTAACA- ---TCAAGAT 52941 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||| ATACCATACT CATTTGGGAA TCATGTTCAT TAGATTGAGT ATATTAACAT CTTTCAAGAT 122 TCATTATCTT TATTTCTCTT GTGTCGGTAC GTGACACTCC GCTCCCTC-A TATTCATTAT 52882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| TCATTATCTT TATTTCTCTT GTGTCGGTAC GTGACACTCC GCTCCCTCAA TATTCATTAA 182 TCCTCTTGTG TCGGTTCGTA ACACCCCGAT CCCCTAATTC TACGTGTCGA TTCGTGA 52825 |||||||||| ||||| ||| |||| ||||| ||||||| || || ||||| || |||| TCCTCTTGTG TCGGTACGTG ACACTCCGAT CCCCTAAATC TATATGTCGG TTTGTGA 239 hqPGS_C08HBa0027D09.1-_SGN-E391780- (53056 52825) ******************************************************************************** EST sequence 108 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 53910 to 51622): Exon 1 53300 52826 ( 475 n); cDNA 1 481 ( 481 n); score: 0.891 MATCH C08HBa0027D09.1- SGN-E246710- 0.891 475 0.988 C PGS_C08HBa0027D09.1-_SGN-E246710- (53300 52826) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAGCATTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTAGAA 53241 |||||||||| |||||||||| |||||||||| || |||| | || | |||| |||||| ||| AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GT-AGTAAGA CTGGCTTGAA 59 TTACTGTTGA GTTGAGGACG ACGGCACGTT TGTTGCACTC CACAAAT-AA CAAGAAGAAA 53182 |||||||||| ||||| ||| | |||||||| || ||||||| ||||||| || ||||||| | TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTGCACTC CACAAATAAA CAAGAAG-AG 118 AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAACTC 53122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAACTC 178 AAAATAGAAA AC-A-GTATA TACCAAGTAA TATCATAAAC TCAACTATGA TACTCAACAT 53064 |||||||||| | | |||| |||||||||| ||||||||| |||||||||| |||||||||| AAAATAGAAA TCAATATATA TACCAAGTAA TATCATAAAA TCAACTATGA TACTCAACAT 238 GTAGCAACAA CAAGCACTAT ATCATTAACA ATTACCGTCA AGTCCACTCA CGAGGAATCA 53004 |||||||||| ||| ||||| |||||||||| |||||||||| ||| ||| || ||||| ||| GTAGCAACAA CAAATACTAT ATCATTAACA ATTACCGTCA AGTTCACACA TGAGGACTCA 298 AGCCCCAATA CCATACTCAT TTGGGAATCA TGTTCATTAG ATTGAGTATA TTAACA---- 52948 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGCCTCAATA CCATACTCAT TTGGGAATCA TGTTCATTAG ATTGAGTATA TTAACATCTT 358 TCAAGATTCA TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCGCT CCCTC-ATAT 52889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TCAAGATTCA TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCGCT CCCTCAATAT 418 TCATTATTCC TCTTGTGTCG GTTCGTAACA CCCCGATCCC CTAATTCTAC GTGTCGATTC 52829 |||||| ||| |||||||||| || ||| ||| | |||||||| |||| |||| ||||| || TCATTAATCC TCTTGTGTCG GTACGTGACA CTCCGATCCC CTAAATCTAT ATGTCGGTTT 478 GTG 52826 ||| GTG 481 hqPGS_C08HBa0027D09.1-_SGN-E246710- (53300 52826) ******************************************************************************** EST sequence 325 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 54519 to 50580): Exon 1 53439 52840 ( 600 n); cDNA 49 638 ( 590 n); score: 0.810 PPA cDNA 18 1 MATCH C08HBa0027D09.1- SGN-E546506+ 0.810 600 0.822 C PGS_C08HBa0027D09.1-_SGN-E546506+ (53439 52840) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA 53380 |||||||||| |||||||||| |||||||||| |||||||| | ||| |||| | ||| || TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC TCAAATTACT TA-ACTAGGA 107 GTTTCTAAGA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGGAGTTC AAGGCATCAA 53320 | ||||||| | | ||||| | ||| ||| |||||||||| |||| | ||| |||||||||| ATGTCTAAGA A-C--AAAAT AACTAAAAAG CTAGTCCATG CCGGAAATTC AAGGCATCAA 164 GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCATTAG CTCACCCTGA A-GATCCGGT 53261 ||| ||||| |||||| ||| |||||||||| || ||||||| |||||||||| | |||| | GACTTGAAGA AGAAGACCCA GTCCAAGCTA GACGCATTAG CTCACCCTGA ATTTTCCGAT 224 GTGACGAAGA CTGGCTAGAA TTACTGTTGA GTTGAGGACG ACGGCACGTT TGTTGCACTC 53201 | ||||| ||||||||| ||||||||| ||||| | | |||| ||||| || |||| | GAAGTGAAGA CTGGCTAGAT CTACTGTTGA GTTGAAGTTG ACGGAACGTT TGCTGCATTA 284 CACAAATAAC AAGAAGAAAA ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT 53141 |||||||||| || || ||| |||| ||||| |||||||||| || || ||| ||||||||| CACAAATAAC AAAGAGGAAA ACATGAAAGT AGGGGTCAGT AC-AACCACA CGTACTGAGT 343 AGATATCATC GGCCAACTCA AAATAGAAAA CAGTATATAC CAAGTAATAT CATAAACTCA 53081 |||||||||| |||||||||| |||||| || ||||||||| ||| ||||| |||| ||| AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATATAT CAA-TAATAA TGTAAA-TCA 401 ACTATGATAC TCAACATGTA GCAACAACAA GCACTATATC ATTAACAATT ACCGTCAAGT 53021 |||| |||| |||||||||| |||| ||| | || | || || || || | || | ||| ACTACAATAC TCAACATGTA GCAATAAC-A CCATGAATTC ATCAATAACT ACAACCGAGT 460 CCACTCACGA GGAATCAAGC CCCAATACCA TACTCATTTG GGAATCATGT TCATTAGATT 52961 ||| || || ||| |||||| | |||||||| |||||||||| ||||| | || |||||||||| TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 520 GAGTATATT- A--A-C-ATC AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC 52906 ||||||||| | | | || |||||||||| |||||| || |||||||||| |||||||||| GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 580 ACTCCGCTCC CTCATATTCA TTATTCCTCT TGTGTCGGTT CGTAACACCC CGATCCCCTA 52846 |||||| | | ||| |||| || | | || ||| ||| ||| ||| | |||| ||| ACTCCGAT-C CTC-TATT-T CTA-T-C-CT GGTGCCGGAA CGTGGCACTC CGAT--CCTC 632 ATTCTA 52840 |||||| ATTCTA 638 hqPGS_C08HBa0027D09.1-_SGN-E546506+ (53439 52840) ******************************************************************************** EST sequence 160 -strand 236 n (File: SGN-E209683-) 1 CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 61 AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 121 ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 181 ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA Predicted gene structure (within gDNA segment 53810 to 51015): Exon 1 53200 53047 ( 154 n); cDNA 1 154 ( 154 n); score: 0.864 MATCH C08HBa0027D09.1- SGN-E209683- 0.864 154 0.653 C PGS_C08HBa0027D09.1-_SGN-E209683- (53200 53047) Alignment (genomic DNA sequence = upper lines): CACAAATAAC AAGAAGAAAA ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT 53141 |||||||||| ||||||| || |||||||||| |||||||||| ||||| |||| |||||||||| CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 60 AGATATCATC GGCCAACTCA AAATAGAAAA CAGTATATAC CAAGTAATAT CATAAACTCA 53081 |||||||||| |||||||||| |||||| || |||||| || ||| ||||| |||||| ||| AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 120 ACTATGATAC TCAACATGTA GCAACAACAA GCAC 53047 |||| || | | |||||| | ||| | | || ACTAATATCC TTAACATGCA GCATTTATAG TTAC 154 hqPGS_C08HBa0027D09.1-_SGN-E209683- (53200 53047) ******************************************************************************** EST sequence 66 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 55280 to 52525): Exon 1 53851 53125 ( 727 n); cDNA 2 729 ( 728 n); score: 0.940 MATCH C08HBa0027D09.1- SGN-E351546- 0.940 727 0.997 C PGS_C08HBa0027D09.1-_SGN-E351546- (53851 53125) Alignment (genomic DNA sequence = upper lines): GTCGTTGCTC TAGTTCTAAC CATCTGCGAA ATAGAGTGAA GATGGTCAGA TACCAATTTG 53792 |||||||||| |||||||| | |||||| | | | ||||||| ||||||||| |||||||| | GTCGTTGCTC TAGTTCTACC CATCTG-GCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 60 TATCACCTAG ATACCAATTG GATCCAAGTA ATAGCACGAA AGAAAGAATG AAAGAGTGAA 53732 |||| | ||| |||||||||| || ||||| ||||||||| |||||||||| |||||||||| TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 120 ATTTTCCTAA AGTCCTATAG CCTCTCAAGG AAAAGTAAAG GCGTCCCCCT ACCGTTCCTT 53672 ||||||||| |||| ||||| |||||||||| ||||||||| |||||||||| |||||||||| GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 180 AAGACTCTAC TAGACCTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 53612 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 240 AG-TTTGTCA CGACCCAAAT CCGGGCCGCG ACTGGCACCC ACACTTACGC TCCTATGTGA 53553 || ||||||| |||||||||| ||||||||| |||||||||| |||||||| | |||||||||| AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 300 GCGAACCAAC CAATCTAAAC CTTAACATTT CAAGGTAATA TCAACATAAA GTAATGCGGA 53493 |||||||||| |||||||||| |||||||||| ||| |||||| ||||| ||| |||||||||| GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 360 AGACTTAAAC TCATTAATAA AATCAATAAC TATTATTATT CAACATCTAT TATTCCCCAA 53433 |||||||||| |||||||||| |||||||||| || ||||||| ||||||||| |||| ||||| AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATT-CCCAA 419 AATCTGGAAG TCATCATCAC AAGAACATCT ACTTTAAACT ACTAATTCTA AGAGTTTCTA 53373 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTGGAAG TCATCATCAC AAGAACATCT ACTTTAAACT ACTAATTCTA AGAGTTTCTA 479 AGAAGCT-AA AAA-TACATA AGAAGCTAGT CCATGCCGGG AGTTCAAGGC ATCAAGACAT 53315 ||||||| || ||| |||||| |||||||||| ||||||||| |||||||||| |||||||||| AGAAGCTAAA AAATTACATA AGAAGCTAGT CCATGCCGGA AGTTCAAGGC ATCAAGACAT 539 GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC ATTAGCTCAC CCTGAAGATC CGGTGTGACG 53255 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC GTTAGCTCAC CCTGAAGATC CGGTGTGACG 599 AAGACTGGCT AGAATTACTG TTGAGTTGAG GACGACGGCA CGTTTGTTGC ACTCCACAAA 53195 |||||||||| || |||||| |||||| || || ||||||| |||||| ||| |||||||||| AAGACTGGCT TGAGTTACTG TTGAGTCGAA GATGACGGCA CGTTTGCTGC ACTCCACAAA 659 TAACAAGAAG AAAAACATAA AAGTAGGGGT CAGTACAAAA CACGGGTACT GAGTAGATAT 53135 || ||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TACCAAGAAG AAAAACATAA AAGTAGGGGT CAGTACAAAA CACGGCTACT GAGTAGATAT 719 CATCGGCCAA 53125 |||||||||| CATCGGCCAA 729 hqPGS_C08HBa0027D09.1-_SGN-E351546- (53851 53125) ******************************************************************************** EST sequence 123 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 54540 to 52525): Exon 1 53777 53125 ( 653 n); cDNA 1 655 ( 655 n); score: 0.949 MATCH C08HBa0027D09.1- SGN-E356696- 0.949 653 0.997 C PGS_C08HBa0027D09.1-_SGN-E356696- (53777 53125) Alignment (genomic DNA sequence = upper lines): CAATTGGATC CAAGTAATAG CACGAAAGAA AGAATGAAAG AGTGAAATTT TCCTAAAGTC 53718 |||||||| |||||| ||| |||||||||| |||||||||| |||||| ||| |||||||||| CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 60 CTATAGCCTC TCAAGGAAAA GTAAAGGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 53658 ||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 120 CCTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAG-T TTGTCACGAC 53599 | |||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 180 CCAAATCCGG GCCGCGACTG GCACCCACAC TTACGCTCCT ATGTGAGCGA ACCAACCAAT 53539 |||||||||| ||||| |||| |||||||||| |||| ||| | |||||||||| |||||||||| CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 240 CTAAACCTTA ACATTTCAAG GTAATATCAA CATAAAGTAA TGCGGAAGAC TTAAACTCAT 53479 |||||||||| ||||||||| |||||| ||| || ||||||| |||||||||| |||||||||| CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 300 TAATAAAATC AATAACTATT ATTATTCAAC ATCTATTATT CCCCAAAATC TGGAAGTCAT 53419 |||||||||| |||||||| | |||||| ||| |||||||||| ||||||| | |||||||||| TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT -CCCAAAACC TGGAAGTCAT 359 CATCACAAGA ACATCTACTT TAAACTACTA ATTCTAAGAG TTTCTAAGAA GCT-AAAAA- 53361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| CATCACAAGA ACATCTACTT TAAACTACTA ATTCTAAGAG TTTCTAAGAA GCTAAAAAAT 419 TACATAAGAA GCTAGTCCAT GCCGGGAGTT CAAGGCATCA AGACATGAAG GAGAAGATCC 53301 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TACATAAGAA GCTAGTCCAT GCCGGAAGTT CAAGGCATCA AGACATGAAG GAGAAGATCC 479 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTAGAA 53241 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||| || AGTCCAAGCT AGAAGCGTTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTTGAG 539 TTACTGTTGA GTTGAGGACG ACGGCACGTT TGTTGCACTC CACAAATAAC AAGAAGAAAA 53181 |||||||||| || || || | |||||||||| || ||||||| |||||||||| |||||||||| TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC CACAAATAAC AAGAAGAAAA 599 ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT AGATATCATC GGCCAA 53125 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||| ACATAAAAGT AGGGGTCAGT ACAAAACACG GCTACTGAGT AGATATCATC GGCCAA 655 hqPGS_C08HBa0027D09.1-_SGN-E356696- (53777 53125) ******************************************************************************** EST sequence 113 -strand 580 n (File: SGN-E356206-) 1 GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 61 TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 121 CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 181 TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 241 CTACTATTAT TAAACATCTA TTATTCCCAA AACCTGGAAG TCATCATCAC AAGAACATCT 301 ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA AGAAGCTAGT 361 CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC 421 GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG TTGAGTCGAA 481 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT 541 CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA Predicted gene structure (within gDNA segment 54555 to 52525): Exon 1 53702 53125 ( 578 n); cDNA 1 580 ( 580 n); score: 0.947 MATCH C08HBa0027D09.1- SGN-E356206- 0.947 578 0.997 C PGS_C08HBa0027D09.1-_SGN-E356206- (53702 53125) Alignment (genomic DNA sequence = upper lines): GAAAAGTAAA GGCGTCCCCC TACCGTTCCT TAAGACTCTA CTAGACCTGT TCTTGTGTGA 53643 |||||||||| |||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 60 TGAGACCAAC GAACCTAATG CTCTGATACC AAG-TTTGTC ACGACCCAAA TCCGGGCCGC 53584 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 120 GACTGGCACC CACACTTACG CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 53524 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 180 TCAAGGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 53464 |||| ||||| | ||||| || |||||||||| |||||||||| |||||||||| |||||||||| TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 240 CTATTATTAT TCAACATCTA TTATTCCCCA AAATCTGGAA GTCATCATCA CAAGAACATC 53404 ||| |||||| | |||||||| ||||| |||| ||| |||||| |||||||||| |||||||||| CTACTATTAT TAAACATCTA TTATT-CCCA AAACCTGGAA GTCATCATCA CAAGAACATC 299 TACTTTAAAC TACTAATTCT AAGAGTTTCT AAGAAGCTAA -AAA-TACAT AAGAAGCTAG 53346 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| TACTTTAAAC TACTAATTCT AAGAGTTTCT AAGAAGCTAA AAAATTACAT AAGAAGCTAG 359 TCCATGCCGG GAGTTCAAGG CATCAAGACA TGAAGGAGAA GATCCAGTCC AAGCTAGAAG 53286 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATGCCGG AAGTTCAAGG CATCAAGACA TGAAGGAGAA GATCCAGTCC AAGCTAGAAG 419 CATTAGCTCA CCCTGAAGAT CCGGTGTGAC GAAGACTGGC TAGAATTACT GTTGAGTTGA 53226 | |||||||| |||||||||| |||||||||| |||||||||| | || ||||| ||||||| || CGTTAGCTCA CCCTGAAGAT CCGGTGTGAC GAAGACTGGC TTGAGTTACT GTTGAGTCGA 479 GGACGACGGC ACGTTTGTTG CACTCCACAA ATAACAAGAA GAAAAACATA AAAGTAGGGG 53166 || |||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AGATGACGGC ACGTTTGCTG CACTCCACAA ATAACAAGAA GAAAAACATA AAAGTAGGGG 539 TCAGTACAAA ACACGGGTAC TGAGTAGATA TCATCGGCCA A 53125 |||||||||| |||||| ||| |||||||||| |||||||||| | TCAGTACAAA ACACGGCTAC TGAGTAGATA TCATCGGCCA A 580 hqPGS_C08HBa0027D09.1-_SGN-E356206- (53702 53125) ******************************************************************************** EST sequence 176 +strand 434 n (File: SGN-E222578+) 1 TTTTTTTTTT TTTTTTTTTA ATAAAAACCA ATTCAATAAC TATCAATATT CAACATCTAT 61 TATTCCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 121 GAGTTTCTAA AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAGGTT CAAGGCATCA 181 AGACATGAAG GAGAAGATCC AGTCCAAGCT AGACGCGTTA GCTCACCCTG AAGATCCGGT 241 GTGACGAAGA CTGGCTTGAG TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC 301 CACAACTTTC TAGATGGGGA CTTTCTTCAA GGCTTCGAGA TGGAAACTTG CTTGCAGAGC 361 TTCGAGTGTT ACCAGCTTCA AGATGGAGTT TCAGTGATGA GGCTTGCTAG TCTCGAGTTT 421 TTTTTTTTTT TTTT Predicted gene structure (within gDNA segment 54516 to 50855): Exon 1 53470 53196 ( 275 n); cDNA 33 305 ( 273 n); score: 0.945 PPA cDNA 19 1 MATCH C08HBa0027D09.1- SGN-E222578+ 0.945 275 0.634 C PGS_C08HBa0027D09.1-_SGN-E222578+ (53470 53196) Alignment (genomic DNA sequence = upper lines): TCAATAACTA TTATTATTCA ACATCTATTA TTCCCCAAAA TCTGGAAGTC ATCATCACAA 53411 |||||||||| | | |||||| |||||||||| || ||||||| ||||||||| |||||||||| TCAATAACTA TCAATATTCA ACATCTATTA TT-CCCAAAA CCTGGAAGTC ATCATCACAA 91 GAACATCTAC TTTAAACTAC TAATTCTAAG AGTTTCTAAG AAGCTAAAAA TACATAAGAA 53351 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAACATCTAC TTTAAACTAC TAATTCTAAG AGTTTCTAA- AAGCTAAAAA TACATAAGAA 150 GCTAGTCCAT GCCGGGAGTT CAAGGCATCA AGACATGAAG GAGAAGATCC AGTCCAAGCT 53291 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAGTCCAT GCCGGAGGTT CAAGGCATCA AGACATGAAG GAGAAGATCC AGTCCAAGCT 210 AGAAGCATTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTAGAA TTACTGTTGA 53231 ||| || ||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| AGACGCGTTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTTGAG TTACTGTTGA 270 GTTGAGGACG ACGGCACGTT TGTTGCACTC CACAA 53196 || || || | |||||||||| || ||||||| ||||| GTCGAAGATG ACGGCACGTT TGCTGCACTC CACAA 305 hqPGS_C08HBa0027D09.1-_SGN-E222578+ (53470 53196) ******************************************************************************** EST sequence 312 +strand 710 n (File: SGN-E392027+) 1 CCACAGCCCC AGTGGCTGGC TCAGTCGCAC CCTGTCCCGC CGGTGCTGGT GTTGATGCTG 61 GCGTAGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 121 ATTTGTATCA CCTAGATACC AATTGGACCC AAGTAATAGC ACGAAAGAAG AAAGAATGGA 181 ATTTTCCAAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAG GCATCCCCCT ACCGTTCCTT 241 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 301 AGTTTGTCAC GACCAAAACC GGGTTGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC 361 GAACCAACCA ATCTAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA 421 CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC 481 CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA ACTAAGAGTA 541 GTCTAAAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 601 TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 661 TAAGACTGGC TTGAATTACT GTTGAGTTGA ACACGATGGC ACGTTTGCTG Predicted gene structure (within gDNA segment 55101 to 52039): Exon 1 53869 53206 ( 664 n); cDNA 48 710 ( 663 n); score: 0.883 MATCH C08HBa0027D09.1- SGN-E392027+ 0.883 664 0.935 C PGS_C08HBa0027D09.1-_SGN-E392027+ (53869 53206) Alignment (genomic DNA sequence = upper lines): GGTGTCGCTG CTGGCGCGGT CGTTGCTCTA GTTCTAACCA TCTGCGAAAT AGAGTGAAGA 53810 ||||| | || |||||| || |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTGATG CTGGCGTAGT CGTTGCTCTA GTTCTAACCA TCTGCGAAAT AGAGTGAAGA 107 TGGTCAGATA CCAATTTGTA TCACCTAGAT ACCAATTGGA TCCAAGTAAT AGCACGAAAG 53750 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||| | TGGTCAGATA CCAATTTGTA TCACCTAGAT ACCAATTGGA CCCAAGTAAT AGCAC----G 163 AAAGAATGAA AGAGTGAAAT TTTCCTAAAG TCCTATAGCC TCTCAAGGAA AAGTAAAGGC 53690 |||||| ||| ||| || ||| ||||| |||| || ||||||| |||||||||| |||||||||| AAAGAA-GAA AGAATGGAAT TTTCCAAAAG TCTTATAGCC TCTCAAGGAA AAGTAAAGGC 222 GTCCCCCTAC CGTTCCTTAA GACTCTACTA GACCTGTTCT TGTGTGATGA GACCAACGAA 53630 ||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| ATCCCCCTAC CGTTCCTTAA GACTCTACTA GACTCGTTCT TGTGTGATGA GACCAACGAA 282 CCTAATGCTC TGATACCAAG TTTGTCACGA CCCAAATCCG GGCCGCGACT GGCACCCACA 53570 |||||||||| |||||||||| |||||||||| ||||| ||| || |||||| |||||||||| CCTAATGCTC TGATACCAAG TTTGTCACGA -CCAAAACCG GGTTGCGACT GGCACCCACA 341 CTTACGCTCC TATGTGAGCG AACCAACCAA TCTAAACCTT AACATTTCAA GGTAATATCA 53510 ||||| |||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||| CTTACCCTCC TATGTGAGCG AACCAACCAA TCT-AACCTT AACATTTCAA TATAATATCA 400 ACATAAAGTA ATGCGGAAGA CTTAAACTCA TT-AAT--A- A--AA-TCAA TAACTATTAT 53457 ||| |||||| ||| |||||| |||||||||| || ||| | | || ||| ||||| || ACAGAAAGTA ATGTGGAAGA CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA 460 TATTCAACAT CTATTATTCC CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTAC-TTT 53398 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| | AATTCAACAT CTATTATTCC CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC 520 AAACTACTAA TTCTAAGAGT -TTCTAAGAA GCTAAAAATA CATAAGAAGC TAGTCCATGC 53339 ||| ||||| |||||||| ||||| || |||||||||| |||||||||| |||||||||| AAATGACTAA -ACTAAGAGT AGTCTAA-AA GCTAAAAATA CATAAGAAGC TAGTCCATGC 578 CGGGAGTTCA AGGCATCAAG ACATGAAGGA GAAGATCCAG TCCAAGCTAG AAGCATTAGC 53279 ||| |||||| |||||||||| || ||||| | |||||||||| |||||||||| |||||||||| CGGAAGTTCA AGGCATCAAG ACTTGAAGAA GAAGATCCAG TCCAAGCTAG AAGCATTAGC 638 TCACCCTGAA GATCCGGTGT GACGAAGACT GGCTAGAATT ACTGTTGAGT TGAGGACGAC 53219 |||||||||| |||| ||| | |||||| |||| ||||| |||||||||| ||| |||| TCACCCTGAA TTTCCGATGT -AGTAAGACT GGCTTGAATT ACTGTTGAGT TGAACACGAT 697 GGCACGTTTG TTG 53206 |||||||||| || GGCACGTTTG CTG 710 hqPGS_C08HBa0027D09.1-_SGN-E392027+ (53869 53206) ******************************************************************************** EST sequence 243 +strand 840 n (File: SGN-E542084+) 1 TTTTTTTTTT TAGGGGAAAA TTTCTTACTT CTATAAATGT CACGACCCAA ATCGGATCGC 61 GACTGGCACC CACACTTACC CTGCTATGTG AGCGAACCAA CCAATCCAAA CCTTAACATT 121 TCAATGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTTATTAATG AAAACCAATT 181 CAATAACTAT TATTTCCCAA AATCTGGAAG TCATCATCAT AAGAACATCT ACTTCAAATT 241 ACTAAATCTA AGAGTTTCTA AGAAGCTAAA AAATACATAA AAGCTAGTCC ATGCCGGAAC 301 TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAT CTAGAAAGCA TTAGCTCACC 361 CTGATATCCG AAGTAATGAA GACTGGCTAG AGTTACTGTT GAGTCGAAGA TGACGGCACG 421 TTTGCTAAAA TCAGTGGACG GAGGAGAAGG GAAAGCACAC CGGGAATGAG AAGAAGCTGA 481 AGGAGGAACC AAAGAGGAAT CCCATTGCAA AGTAAATGAG AGTGTAAGCT AGCAGACGCG 541 ATGGAAGAGC TTACGCAGAA ATAACACTCT CATTTGGTGA TTTAGTTTGG AGATCATCTG 601 AGACCTTCGT GTTGGACAAC ATCATCCATG AAGATGTCAT TAGAAAAGTT AGATGCTTTA 661 TATACATGTT GATAGTTCCT GACTACTCTA TTTCTTTTTC AGAAAGCCCC GAAATTTCTC 721 AGATGATAAA TGCTGTCTGT TTTGGAAAAC CATCTCTATG CAAAGATGAT GTTTGCTGCA 781 TTGAGGTGTC AATATTGGGA ATTTCAAGAA AATTATGCCT TGTAGAATAT GTACAGCAAC Predicted gene structure (within gDNA segment 54990 to 47296): Exon 1 53607 53210 ( 398 n); cDNA 38 423 ( 386 n); score: 0.874 Intron 1 53209 50969 (2241 n); Pd: 0.000 (s: 0.88), Pa: 0.987 (s: 0) Exon 2 50968 50959 ( 10 n); cDNA 424 432 ( 9 n); score: 0.800 PPA cDNA 11 1 MATCH C08HBa0027D09.1- SGN-E542084+ 0.874 408 0.486 C PGS_C08HBa0027D09.1-_SGN-E542084+ (53607 53210,50968 50959) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCCGGG CCGCGACTGG CACCCACACT TACGCTCCTA TGTGAGCGAA 53548 |||||||||| |||||| || ||||||||| |||||||||| ||| || ||| |||||||||| TGTCACGACC CAAATC-GGA TCGCGACTGG CACCCACACT TACCCTGCTA TGTGAGCGAA 96 CCAACCAATC TAAACCTTAA CATTTCAAGG TAATATCAAC ATAAAGTAAT GCGGAAGACT 53488 |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| CCAACCAATC CAAACCTTAA CATTTCAATG TAATATCAAC ATAAAGTAAT GCGGAAGACT 156 TAAACTCATT AATAAAATCA ATAACTATTA TTATTCAACA TCTATTATTC CCCAAAATCT 53428 |||||| ||| ||| ||| | || | | | | | | | |||||||| |||||||||| TAAACTTATT AATGAAA--A CCAA-T-TCA --A-T--A-A -CTATTATTT CCCAAAATCT 205 GGAAGTCATC ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG 53368 |||||||||| |||| ||||| ||||||||| ||| |||||| ||||||||| |||||||||| GGAAGTCATC ATCATAAGAA CATCTACTTC AAATTACTAA ATCTAAGAGT TTCTAAGAAG 265 CT-AAAAATA CATAAGAAGC TAGTCCATGC CGGGAGTTCA AGGCATCAAG ACATGAAGGA 53309 || ||||||| ||||| |||| |||||||||| ||| | |||| || ||||||| |||||||| CTAAAAAATA CATAA-AAGC TAGTCCATGC CGGAACTTCA AGACATCAAG ACATGAAGAG 324 GAAGATCCAG TCCAAGCTAG -AAGCATTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC 53250 |||||||||| ||||| |||| ||||||||| ||||||||| | ||||| | | | |||||| GAAGATCCAG TCCAATCTAG AAAGCATTAG CTCACCCTG- ATATCCGAAG TAATGAAGAC 383 TGGCTAGAAT TACTGTTGAG TTGAGGACGA CGGCACGTTT GTTGCACTCC ACAAATAACA 53190 |||||||| | |||||||||| | || || || |||||||||| TGGCTAGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT .......... .......... 423 AGAAGAAAAA CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG 53130 .......... .......... .......... .......... .......... .......... 423 GCCAACTCAA AATAGAAAAC AGTATATACC AAGTAATATC ATAAACTCAA CTATGATACT 53070 .......... .......... .......... .......... .......... .......... 423 CAACATGTAG CAACAACAAG CACTATATCA TTAACAATTA CCGTCAAGTC CACTCACGAG 53010 .......... .......... .......... .......... .......... .......... 423 GAATCAAGCC CCAATACCAT ACTCATTTGG GAATCATGTT CATTAGATTG AGTATATTAA 52950 .......... .......... .......... .......... .......... .......... 423 CATCAAGATT CATTATCTTT ATTTCTCTTG TGTCGGTACG TGACACTCCG CTCCCTCATA 52890 .......... .......... .......... .......... .......... .......... 423 TTCATTATTC CTCTTGTGTC GGTTCGTAAC ACCCCGATCC CCTAATTCTA CGTGTCGATT 52830 .......... .......... .......... .......... .......... .......... 423 CGTGACACCC GATCCCCTAA TTCTACGTGT CGGTTCGTGA CACCCGATCC CCTAATTCTA 52770 .......... .......... .......... .......... .......... .......... 423 CGTGTCGATT CATGACACCC GATCCCCTAA ATCTACGTGT CGGTTCGTGA CACCCGATCC 52710 .......... .......... .......... .......... .......... .......... 423 CCTAATTCTA CGTGTCGGTT AGTGACACCC GATCCCCTAA TTCTACGTGT CGGTTCGTGA 52650 .......... .......... .......... .......... .......... .......... 423 CACCCGATCC ACTAATATCA TTCTGTAAAT CATCAAGCCT TCTTTATACC AAGGCATCCT 52590 .......... .......... .......... .......... .......... .......... 423 CAATCCCATT ACTTTAATTC ATCAAGCCTT CTTCTATACC AAGGCATCAT CATTAATAAT 52530 .......... .......... .......... .......... .......... .......... 423 GTATATTAAA GTTTCTTTTC AAGATTTGGG ATTCAATATT TTCATCATGC TTATCTTATC 52470 .......... .......... .......... .......... .......... .......... 423 ACAATCACAT AGTCATATTC ATGCAAGCGT ACAATTAAGC ATATAGCAGG GTTTACAATA 52410 .......... .......... .......... .......... .......... .......... 423 TTATCAATAC ATATCATTCT CTATTAAGAG TTTACTACGA ATATCGTAAG AGAAACCATA 52350 .......... .......... .......... .......... .......... .......... 423 ACCTACCTCC ACCGAAGAAT TGAATCAAGC AAGAATTTTC CCAAAGCTTT GTTTCTCCCT 52290 .......... .......... .......... .......... .......... .......... 423 TCTCGTTCGA TTCTCTCTCT CTCTCTCCTG TTCTTTCTAT TTTCTTTATT CAAACCCTCT 52230 .......... .......... .......... .......... .......... .......... 423 TTCTTTTACC CTAATTAGTA TATAATTAGG AATAAAAGAT GGCAATAATA CCCCACTAAT 52170 .......... .......... .......... .......... .......... .......... 423 TAACTTAGGG TTACCTCTTT TAACCCCTCA AGAATTTTAG TTATTAATAT AAACCCACGA 52110 .......... .......... .......... .......... .......... .......... 423 AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCTTT AAAACTTCAC CAGAAATCCG 52050 .......... .......... .......... .......... .......... .......... 423 ACTCTGCCTG GGATTTGTGC AACCTGTGAC GGGCCGTCGT GCCTGCGACG GTCCGTCCTG 51990 .......... .......... .......... .......... .......... .......... 423 CATGTCGTCG CAAAGTTCAG AGAATGGATT TTCACTGAAG TCTCTGTGAC GGTCCGTCCT 51930 .......... .......... .......... .......... .......... .......... 423 GCCATTCCGT CACGAAGTTT AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTTCTAAG 51870 .......... .......... .......... .......... .......... .......... 423 TGTTTTGAAA CGAGACCCTG CGACGGTCCG TCGTGCCCAT GACGTTCCGT CGTGGGGTCC 51810 .......... .......... .......... .......... .......... .......... 423 GTCGCTTCTG CCAGTTTTTC CAGAATTGAA GTCTGTTGCT CAAAACGACT AAACGGGTCG 51750 .......... .......... .......... .......... .......... .......... 423 TTACAAAATT ATTATTTATT AAATATTAAT TAAATTTCAT ATTATATAGC TACCTTTTAA 51690 .......... .......... .......... .......... .......... .......... 423 AAAACAAAAC CTAAAAATTA GGGATTTGAT TTTAATTAAT ATCATATTAT ATGGTTACCC 51630 .......... .......... .......... .......... .......... .......... 423 AATAACTACC CACCCTCATA TCAACCAATA CTCTTTTATA TTCCCCCAAT ATACTTAACA 51570 .......... .......... .......... .......... .......... .......... 423 TCTCCCCTAT TTACATGCAT CTCTTTCCAC CATATTAATT TTGCACGCTT TTTTTACTTT 51510 .......... .......... .......... .......... .......... .......... 423 TCTCTCTCTA TTAATCAATT AAAGGCAGCA CATGTTTCTC TCTCTATTAA TTAATTAAAG 51450 .......... .......... .......... .......... .......... .......... 423 ATAGAAACTA GCTTTAAACT TATTTGTCAA AATCAGATTA AGCTTAAACT TCTTATTCAA 51390 .......... .......... .......... .......... .......... .......... 423 CTACATCTCT ATCAATCTTC CACAAAATTA GGTTTTTTAT TTTTCGACCA TCAAATTTGC 51330 .......... .......... .......... .......... .......... .......... 423 AATATTGCAT GATTTTCGGA AAAAATCGTG TTGTATAGAT AACCAAACAG GTTTGTTTCT 51270 .......... .......... .......... .......... .......... .......... 423 TAAAGTTTTT TTTTCTCTGA TTCCTTTGTC AAATTATTTA ATTTTTATAT GTTGTTGCTT 51210 .......... .......... .......... .......... .......... .......... 423 GATTTTGGGA GAAGTTTACG TTGCATAGAT AATGCAGGTT TATTCAAGTT TTACATTTGT 51150 .......... .......... .......... .......... .......... .......... 423 TTATGTCAAA TTCTTTAATA TTTATTTAAC TATAAATTTT TAGGATCTGG ATTGTTGGAT 51090 .......... .......... .......... .......... .......... .......... 423 ACAATGTATA AACCAAATAT CCTAAGGAGA TTCACAAGAG GTACAAACTA TACCGGTAAC 51030 .......... .......... .......... .......... .......... .......... 423 TTCATGGTTG AAATACCATC TTTTGATCTA TGTATAACTC AAATTCAATC GCAAATCTCA 50970 .......... .......... .......... .......... .......... .......... 423 GGCTATACAT C 50959 |||| | || | .GCTA-AAAT C 432 hqPGS_C08HBa0027D09.1-_SGN-E542084+ (53607 53210) ******************************************************************************** EST sequence 173 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 54647 to 49605): Exon 1 53607 53218 ( 390 n); cDNA 45 438 ( 394 n); score: 0.808 PPA cDNA 13 1 MATCH C08HBa0027D09.1- SGN-E370357+ 0.808 390 0.574 C PGS_C08HBa0027D09.1-_SGN-E370357+ (53607 53218) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCCGGG CCGCGACTGG CACCCACACT TACGCTCCTA TGTGAGCGAA 53548 |||||||||| |||||| | | |||| | ||| |||||||||| ||| |||||| |||||||||| TGTCACGACC CAAATC-GAG CCGCAAGTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 103 CCAACCAATC TAAACCTTAA CATTTCAAGG TAATATCAAC ATAAAGTAAT GCGGAAGACT 53488 ||||||||| ||| || |||||||| |||| | || | |||| |||||||||| CCAACCAATA CAAAATCCAA CATTTCAATA TAATGACGGA AT-A--TAAT GCGGAAGACT 160 TAAACTCATT AAT-AAAATC AA-TAACT-A --T-T-ATTA TTCAACATCT ATTA-T-TCC 53437 |||||||||| ||| |||||| || ||| | | | | | | |||||| || |||| | ||| TAAACTCATT AATGAAAATC AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC 220 CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTA-CTTT AAACTACTAA TTCTAAGAGT 53378 |||||||||| |||||||||| |||||||||| ||||| | | ||| |||||| |||||||||| CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT 280 TTCTAAGAAG CTAAAAATAC ATAAGAAGCT AGTCCATGCC GGGAGTTCAA GGCATCAAGA 53318 |||| ||| || | |||| ||| ||||| |||||||||| || | ||||| |||||||||| ATCTAGAAAG CT-AGAATAA CTAAAAAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA 339 CATGAAGGAG AAGATCCAGT CCAAGCTAGA AGCATTAGCT CACCCTGAAG ATCCGGTGTG 53258 ||||||| || |||||||||| |||||||||| ||| |||||| ||| ||||| ||||||| | CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACACTGAA- ATCCGGTATA 398 ACGAAGACTG GCTAGAATTA CTGTTGAGTT GAGGACGACG 53218 | |||||||| |||||| || | |||||||| || ||||||| ATGAAGACTG GCTAGAGTTG CGGTTGAGTT GAAGACGACG 438 hqPGS_C08HBa0027D09.1-_SGN-E370357+ (53607 53218) ******************************************************************************** EST sequence 33 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 54399 to 51585): Exon 1 53439 53218 ( 222 n); cDNA 36 255 ( 220 n); score: 0.914 PPA cDNA 13 1 MATCH C08HBa0027D09.1- SGN-E373117- 0.914 222 0.742 C PGS_C08HBa0027D09.1-_SGN-E373117- (53439 53218) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA 53380 |||||||||| |||||||||| |||||||||| |||||||||| | ||| |||| || ||||||| TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TCAAATTACT AAATCTAAGA 95 GTTTCTAAGA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGGAGTTC AAGGCATCAA 53320 || ||||||| ||||| |||| |||||| || |||||||||| |||| | ||| |||||||||| GTATCTAAGA AGCTA-AAAT ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 154 GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCATTAG CTCACCCTGA AGATCCGGTG 53260 ||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| | ||||| || GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA A-ATCCGATG 213 TGACGAAGAC TGGCTAGAAT TACTGTTGAG TTGAGGACGA CG 53218 | | |||||| |||||||| | | | |||||| |||| ||||| || TAATGAAGAC TGGCTAGAGT TGCGGTTGAG TTGAAGACGA CG 255 hqPGS_C08HBa0027D09.1-_SGN-E373117- (53439 53218) ******************************************************************************** EST sequence 216 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 54379 to 51565): Exon 1 53439 53218 ( 222 n); cDNA 35 254 ( 220 n); score: 0.914 PPA cDNA 12 1 MATCH C08HBa0027D09.1- SGN-E373116+ 0.914 222 0.742 C PGS_C08HBa0027D09.1-_SGN-E373116+ (53439 53218) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA 53380 |||||||||| |||||||||| |||||||||| |||||||||| | ||| |||| || ||||||| TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TCAAATTACT AAATCTAAGA 94 GTTTCTAAGA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGGAGTTC AAGGCATCAA 53320 || ||||||| ||||| |||| |||||| || |||||||||| |||| | ||| |||||||||| GTATCTAAGA AGCTA-AAAT ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 153 GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCATTAG CTCACCCTGA AGATCCGGTG 53260 ||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| | ||||| || GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA A-ATCCGATG 212 TGACGAAGAC TGGCTAGAAT TACTGTTGAG TTGAGGACGA CG 53218 | | |||||| |||||||| | | | |||||| |||| ||||| || TAATGAAGAC TGGCTAGAGT TGCGGTTGAG TTGAAGACGA CG 254 hqPGS_C08HBa0027D09.1-_SGN-E373116+ (53439 53218) ******************************************************************************** EST sequence 328 +strand 265 n (File: SGN-E216150+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAATCAA TAATCAACTT GTATAACTCA AAACTTATCA 61 TTCCCCAAAA TCTGGAAGTC ATCATCACCA GAGCCTCTAT CATAAAATTA CTAAACTAAG 121 AGTATTCTAA GAAGCTAAAA ATACATACGA AGCTAGTCCA TGCCGGAAGT TCAAGGCATC 181 AAGACTTGAA GAAGAAGATC CAGTCAAACC TAGAAGCATT AGCTCACCCT GAATTTCCGA 241 TGTAGTAGGA CTGGCTTGAG TTACT Predicted gene structure (within gDNA segment 55217 to 51907): Exon 1 53445 53236 ( 210 n); cDNA 56 265 ( 210 n); score: 0.862 PPA cDNA 18 1 MATCH C08HBa0027D09.1- SGN-E216150+ 0.862 210 0.792 C PGS_C08HBa0027D09.1-_SGN-E216150+ (53445 53236) Alignment (genomic DNA sequence = upper lines): TATTATTCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTA-CTTTA AACTACTAAT 53387 ||| |||||| |||||||||| |||||||||| ||| ||| | |||| | | | || |||||| TATCATTCCC CAAAATCTGG AAGTCATCAT CACCAGAGCC TCTATCATAA AATTACTAA- 114 TCTAAGAGT- TTCTAAGAAG CTAAAAATAC ATAAGAAGCT AGTCCATGCC GGGAGTTCAA 53328 |||||||| |||||||||| |||||||||| ||| |||||| |||||||||| || ||||||| ACTAAGAGTA TTCTAAGAAG CTAAAAATAC ATACGAAGCT AGTCCATGCC GGAAGTTCAA 174 GGCATCAAGA CATGAAGGAG AAGATCCAGT CCAAGCTAGA AGCATTAGCT CACCCTGAAG 53268 |||||||||| | ||||| || |||||||||| | || ||||| |||||||||| ||||||||| GGCATCAAGA CTTGAAGAAG AAGATCCAGT CAAACCTAGA AGCATTAGCT CACCCTGAAT 234 ATCCGGTGTG ACGAAGACTG GCTAGAATTA CT 53236 |||| ||| | | ||||| ||| || ||| || TTCCGATGT- AGTAGGACTG GCTTGAGTTA CT 265 hqPGS_C08HBa0027D09.1-_SGN-E216150+ (53445 53236) ******************************************************************************** EST sequence 79 -strand 219 n (File: SGN-E298638-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 61 ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA Predicted gene structure (within gDNA segment 55181 to 52385): Exon 1 53439 53254 ( 186 n); cDNA 36 219 ( 184 n); score: 0.909 PPA cDNA 13 1 MATCH C08HBa0027D09.1- SGN-E298638- 0.909 186 0.849 C PGS_C08HBa0027D09.1-_SGN-E298638- (53439 53254) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA 53380 |||||||||| |||| ||||| |||||||||| ||||| |||| | ||| |||| || ||||||| TCCCCAAAAT CTGGCAGTCA TCATCACAAG AACATGTACT TCAAATTACT AAATCTAAGA 95 GTTTCTAAGA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGGAGTTC AAGGCATCAA 53320 || ||||||| ||||||| || |||||| || |||||||||| |||| | ||| |||||||||| GTATCTAAGA AGCTAAA-AT ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 154 GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCATTAG CTCACCCTGA AGATCCGGTG 53260 ||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| | ||||| || GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA A-ATCCGATG 213 TGACGA 53254 | | || TAATGA 219 hqPGS_C08HBa0027D09.1-_SGN-E298638- (53439 53254) ******************************************************************************** EST sequence 51 -strand 402 n (File: SGN-E352844-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CC Predicted gene structure (within gDNA segment 54407 to 49945): Exon 1 53455 53285 ( 171 n); cDNA 19 188 ( 170 n); score: 0.912 MATCH C08HBa0027D09.1- SGN-E352844- 0.912 171 0.425 C PGS_C08HBa0027D09.1-_SGN-E352844- (53455 53285) Alignment (genomic DNA sequence = upper lines): ATTCAACATC TATTATTCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTTAA 53396 |||||| | | ||||||| || |||||||||| |||| ||||| |||||||||| ||||||| | ATTCAATAAC TATTATTTCC CAAAATCTGG AAGTTATCAT CACAAGAACA TCTACTTCGA 78 ACTACTAATT CTAAGAGTTT CTAAGAAGCT AAAAATACAT AAGAAGCTAG TCCATGCCGG 53336 | |||||| | |||||||| | |||||||||| | |||||||| || |||||| |||||||||| ATTACTAAAT CTAAGAGTAT CTAAGAAGCT A-AAATACAT AAACAGCTAG TCCATGCCGG 137 GAGTTCAAGG CATCAAGACA TGAAGGAGAA GATCCAGTCC AAGCTAGAAG C 53285 | ||||||| |||||||||| ||||| |||| |||||||||| |||||||||| | AACTTCAAGG CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG C 188 hqPGS_C08HBa0027D09.1-_SGN-E352844- (53455 53285) ******************************************************************************** EST sequence 104 -strand 666 n (File: SGN-E368629-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTATAA AAACCAATTC AATAACTATT ATTTCCCAAA 61 ATCTGGAAGT TATCATCACA AGAACATCTA CTTCGAATTA CTAAATCTAG AAGTATCTAA 121 GAGCCTAAAA TACATAACAC AGTTAGTCCA TGCCGAAACT TCAAGGCATC AAGACATAAA 181 GAAGAAGATC CAGTCCAAGC TAGAAGCTTT GTTTTATCGA AAAAAGGTGA TTTTTCGAAA 241 AGAGTTTGTT TTATTTTAAA GTATTTTTCG ACTTTAGGAG TCGCCACTTA ATTTTTAAGA 301 AAAATCAAGA AAACTCATTC TCAAAACAAT TTAAACAGAA AAGTCGTTTT GAAAATATTT 361 TTTAGGATTC GGGATTCTTA TTAGCGTCTT AGGAAGGTGT TTAAGGCACC TAAGACACTC 421 CGTTAAATAC GGTTTTCCAA CGACTAACTT ATTTGATTAT TTTTATTTTT ACCCTTTGCA 481 AATTTATTTG AACTTTTATC ACGATTTACT TAGCCAAACT TTGCAAATTT GAGATATTAA 541 TCTTTTAAGA TTCCGTCTTA GTTAAACTTT CTAAGCCTTA ACTCTCTAAG CAGACTTTCA 601 AATTTTAAAC CTCTATCGTT TCAAAACTTC AATTTTTATT TTTTAGTTTC ATAAAGCAAA 661 AGGCGT Predicted gene structure (within gDNA segment 54587 to 47495): Exon 1 53455 53285 ( 171 n); cDNA 37 207 ( 171 n); score: 0.863 PPA cDNA 28 1 MATCH C08HBa0027D09.1- SGN-E368629- 0.863 171 0.257 C PGS_C08HBa0027D09.1-_SGN-E368629- (53455 53285) Alignment (genomic DNA sequence = upper lines): ATTCAACATC TATTATTCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTTAA 53396 |||||| | | ||||||| || |||||||||| |||| ||||| |||||||||| ||||||| | ATTCAATAAC TATTATTTCC CAAAATCTGG AAGTTATCAT CACAAGAACA TCTACTTCGA 96 ACTACTAATT CTAAGAGTTT CTAAGAAGCT AAAAATACAT AAGA-AGCTA GTCCATGCCG 53337 | |||||| | ||| ||| | |||||| || | |||||||| || | || || |||||||||| ATTACTAAAT CTAGAAGTAT CTAAGAGCCT A-AAATACAT AACACAGTTA GTCCATGCCG 155 GGAGTTCAAG GCATCAAGAC ATGAAGGAGA AGATCCAGTC CAAGCTAGAA GC 53285 | |||||| |||||||||| || ||| ||| |||||||||| |||||||||| || AAACTTCAAG GCATCAAGAC ATAAAGAAGA AGATCCAGTC CAAGCTAGAA GC 207 hqPGS_C08HBa0027D09.1-_SGN-E368629- (53455 53285) ******************************************************************************** EST sequence 96 -strand 620 n (File: SGN-E238551-) 1 CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 61 TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 121 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTGTTTTA TCGAAAAAAG 181 GTGATTTTTC GAAAAGAGTT TGTTTTATTT TAAAGTATTT TTCGACTTTA GGAGTCGCCA 241 CTTAATTTTT AAGAAAAATC AAGAAAACTC ATTCTCAAAA CAATTTAAAC AGAAAAGTCG 301 TTTTGAAAAT ATTTTTTAGG ATTCGGGATT CTTATTAGCG TCTTAGGAAG GTGTTTAAGG 361 CACCTAAGAC ACTCCGTTAA ATACGGTTTT CCAACGACTA ACTTATTTGA TTATTTTTAT 421 TTTTACCCTT TGCAAATTTA TTTGAACTTT TATCACGATT TACTTAGCCA AACTTTGCAA 481 ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA CTTTCTAAGC CTTAACTCTC 541 TAAGCAGACT TTCAAATTTT AAACCTCTAT CGTTTCAAAA CTTCAATTTT TATTTTTTAG 601 TTTCATAAAG CAAAAGGCGT Predicted gene structure (within gDNA segment 54137 to 47495): Exon 1 53446 53285 ( 162 n); cDNA 1 161 ( 161 n); score: 0.920 MATCH C08HBa0027D09.1- SGN-E238551- 0.920 162 0.261 C PGS_C08HBa0027D09.1-_SGN-E238551- (53446 53285) Alignment (genomic DNA sequence = upper lines): CTATTATTCC CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTACTTTA AACTACTAAT 53387 |||||||| | |||||||||| ||||| |||| |||||||||| |||||||| || |||||| CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 60 TCTAAGAGTT TCTAAGAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GGAGTTCAAG 53327 ||||||||| |||||||||| ||||| |||| ||| ||||| |||||||||| | | |||||| TCTAAGAGTA TCTAAGAAGC TAAAA-TACA TAAACAGCTA GTCCATGCCG GAACTTCAAG 119 GCATCAAGAC ATGAAGGAGA AGATCCAGTC CAAGCTAGAA GC 53285 |||||||||| |||||| ||| |||||||||| |||||||||| || GCATCAAGAC ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GC 161 hqPGS_C08HBa0027D09.1-_SGN-E238551- (53446 53285) ******************************************************************************** EST sequence 93 -strand 286 n (File: SGN-E355114-) 1 CCACAGCCCC AGTGGCTGGC TCAGTTGTTT CTTGTCTGGC CGGTGTTGGT GTTGACGTGG 61 TCGTTGCTCT AGTTCTAACC ATCTGCAAAA GAGAGTGAAG ATGGTCAGAT ACCAATTTGT 121 ATCGCCTAGA TACCAATTGG ACTCAAGTAG TAGCACGAAA GAAAGAATGA AAGGGTGAAA 181 TTTTCCTAAA GTCTTATAGC CTCTCAAAGA AAAGTAAAGG CGTCCCCCTA CCGTTCCTAA 241 AGACTCTACT AGACCTGTTC TTGTGTGATG AGACCAACGA ACCTAA Predicted gene structure (within gDNA segment 54637 to 53025): Exon 1 53910 53625 ( 286 n); cDNA 1 286 ( 286 n); score: 0.944 MATCH C08HBa0027D09.1- SGN-E355114- 0.944 286 1.000 C PGS_C08HBa0027D09.1-_SGN-E355114- (53910 53625) Alignment (genomic DNA sequence = upper lines): CCACAGCCCC AGGGGCTGGC TCAGTTGTTT CTTGTCTGGC CGGTGTCGCT GCTGGCGCGG 53851 |||||||||| || ||||||| |||||||||| |||||||||| |||||| | | | || || || CCACAGCCCC AGTGGCTGGC TCAGTTGTTT CTTGTCTGGC CGGTGTTGGT GTTGACGTGG 60 TCGTTGCTCT AGTTCTAACC ATCTGCGAAA TAGAGTGAAG ATGGTCAGAT ACCAATTTGT 53791 |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| |||||||||| TCGTTGCTCT AGTTCTAACC ATCTGCAAAA GAGAGTGAAG ATGGTCAGAT ACCAATTTGT 120 ATCACCTAGA TACCAATTGG ATCCAAGTAA TAGCACGAAA GAAAGAATGA AAGAGTGAAA 53731 ||| |||||| |||||||||| | |||||| |||||||||| |||||||||| ||| |||||| ATCGCCTAGA TACCAATTGG ACTCAAGTAG TAGCACGAAA GAAAGAATGA AAGGGTGAAA 180 TTTTCCTAAA GTCCTATAGC CTCTCAAGGA AAAGTAAAGG CGTCCCCCTA CCGTTCCTTA 53671 |||||||||| ||| |||||| ||||||| || |||||||||| |||||||||| |||||||| | TTTTCCTAAA GTCTTATAGC CTCTCAAAGA AAAGTAAAGG CGTCCCCCTA CCGTTCCTAA 240 AGACTCTACT AGACCTGTTC TTGTGTGATG AGACCAACGA ACCTAA 53625 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGACTCTACT AGACCTGTTC TTGTGTGATG AGACCAACGA ACCTAA 286 hqPGS_C08HBa0027D09.1-_SGN-E355114- (53910 53625) ******************************************************************************** EST sequence 265 +strand 694 n (File: SGN-E353359+) 1 TGTAGTCTAT GCACATTCAA AAACTGCCGA TCTTTACAAC AAAACCGGAG CACCCCAAGG 61 AGATGCACTT GGTCTAATGA AGCCTTTGTT CAATAACTCT TGAAGTTGTG CCTTTAACTC 121 TCTTAACTCT GCGGGAGCCA TTCTATAAGG GGGTATAAAA ATGGGGCGTG TGCCCGGTTC 181 GAGATCAATA CAGAAGTCAA TATCCCTATC CGGTGGCATA CCAGGATGAT CTGCAGGGAA 241 CACATCCATA AACTCACGAA CTACTGAAAC TGAGTCAATC GAAGGTACTT GGGTAGTGTT 301 ATCCTTGAGA TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG 361 AAAGGAGATG ATACGCACCG GATTGGAAGT GTAGTCACCC TCCTACACTA ACAGATCTGT 421 CCCAGGCTTG GCTAACGTCA CGGTTTTAGC ATTACAATCC AAGATTGCAA AATTTGGAGA 481 AAGCCAAGTC ATACCCAGAA TTACATCGAA GTCAACCATT TCTTGCAAGG ATTTTGCCGT 541 AGCCGCTACC TGTAACGCTG AAATCCGCAA CTCTGACCTC AACCCTTTCA CAAAACGACG 601 AATCCTCTCT TGTGGACTGA AACAAAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 661 AGCCTCATAT GCATTGACCT ACATCCTACC TTGC Predicted gene structure (within gDNA segment 57647 to 52738): Exon 1 56055 55539 ( 517 n); cDNA 1 510 ( 510 n); score: 0.911 Intron 1 55538 54795 ( 744 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.84) Exon 2 54794 54613 ( 182 n); cDNA 511 692 ( 182 n); score: 0.879 MATCH C08HBa0027D09.1- SGN-E353359+ 0.903 699 1.007 C PGS_C08HBa0027D09.1-_SGN-E353359+ (56055 55539,54794 54613) Alignment (genomic DNA sequence = upper lines): TGTAGTCTAT ACACATTCGA AAACTCCCAT CCTTCTTCTT TACAAACAAA ACCGAAGCAC 55996 |||||||||| ||||||| | ||||| || |||| ||| |||||| |||| ||||| TGTAGTCTAT GCACATTCAA AAACT----G CC--GATCTT TAC-AACAAA ACCGGAGCAC 53 CCCAAGGGGA TGCACTTGGT CTAATGAAGC CTTTATTCAA TAATTCTTGA AGTTGTGACT 55936 ||||||| || |||||||||| |||||||||| |||| ||||| ||| |||||| ||||||| || CCCAAGGAGA TGCACTTGGT CTAATGAAGC CTTTGTTCAA TAACTCTTGA AGTTGTGCCT 113 TTAACTCTCT TAACTCCGCG GGAGCCATTC TATAAGGGGG TACAGAGATG GGACAAGTAC 55876 |||||||||| |||||| ||| |||||||||| |||||||||| || | | ||| || | || | TTAACTCTCT TAACTCTGCG GGAGCCATTC TATAAGGGGG TATAAAAATG GGGCGTGTGC 173 CGGGTTCAAG ATCAATACAG AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGATCTG 55816 | ||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| CCGGTTCGAG ATCAATACAG AAGTCAATAT CCCTATCCGG TGGCATACCA GGATGATCTG 233 CAGGGAACAC ATCCAAAAAC TCACGAACTA CTGAAACCGA CTCAATCGAA GGTACTTGGG 55756 |||||||||| ||||| |||| |||||||||| ||||||| || ||||||||| |||||||||| CAGGGAACAC ATCCATAAAC TCACGAACTA CTGAAACTGA GTCAATCGAA GGTACTTGGG 293 TAGTGTCATC CTTGAGATGT GCCAAGAAAG CTAAACACCC TTTACTAATC ATTTTCTTAG 55696 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TAGTGTTATC CTTGAGATGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTTTCTTAG 353 CACGAAGAAA GGAGACGATG TGGACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG 55636 |||||||||| ||||| ||| | ||||||| |||||||||| |||||||||| |||||||| CACGAAGAAA GGAGATGATA CGCACCGGAT TGGAAGTGTA GTCACCCTCC TACACTAACA 413 GGTCTGTCCC AGGCTTGGCT AACGTCACCG TTTTAGCATT ACAATCCAAG ATTGCAAATT 55576 | |||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||| | GATCTGTCCC AGGCTTGGCT AACGTCACGG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 473 GCGGAGAAAG CCAAGTCATA CCCAGAATCA CATCAAAATC GTCCATTTCT AAGATAACCA 55516 |||||||| |||||||||| |||||||| | |||| || TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAA... .......... .......... 510 AATCTACATA GGTGTTGCTC CCCACAAAGT TCACCAAATA AGACCTATAC ACCTTTTCAA 55456 .......... .......... .......... .......... .......... .......... 510 CTACCACAGA CTCACCCACC GGAGTAGAAA CATGAATAGG CATATCAAGT AATTCACAAT 55396 .......... .......... .......... .......... .......... .......... 510 GTAAATTTAG ACCATTAGCA AATGAGGAAG ATACATAAGA AAACGTGGAT CCAGGATCAA 55336 .......... .......... .......... .......... .......... .......... 510 ACAATACAGA AGCCATGCAA TCACAAACAA GAAGATTACC TGTGATGACA GCATCAGATG 55276 .......... .......... .......... .......... .......... .......... 510 CCTCCGCTTC AGACCGCCCA GGGAAAGCGT AACAATGGGC CCTATCATTC GTCTGTCCGT 55216 .......... .......... .......... .......... .......... .......... 510 TGCCCCTACC ATGTTGTGAT GTAGTGGCCC CAGTTTGCCC ATTACCTCTG CCGTTCTGGT 55156 .......... .......... .......... .......... .......... .......... 510 GACCACCATT ACCTCGACCA CCACGTCCTC CAGAATAACG GCCTCTACCA TGACCACCTC 55096 .......... .......... .......... .......... .......... .......... 510 TACCTCTAGC TATTGGGGGT CTATAACTTG GTCTGGGACA ATTTCTCCTA ATATGTCCAA 55036 .......... .......... .......... .......... .......... .......... 510 TATCCCCACA TCCATAACAT TCTTTGGAGT CGATCATATG CCCCTCGGAG AAGTGTTGAC 54976 .......... .......... .......... .......... .......... .......... 510 CGGTCTGAGG TGGTCCCCCA ACTACAGTCT GTAGTGAAGA CTGAATTGGT CGGACTGAGT 54916 .......... .......... .......... .......... .......... .......... 510 AACTTCCCGA ACCCTGTCCT CTAGTGTAAG AACCATTCAA CTCACCTCCC TTTCGAAGCC 54856 .......... .......... .......... .......... .......... .......... 510 TTTTTGATGT CGATGTTGTG GTGAAGTCGT CTGGCTTCAC TCCTTCCACT TCTATCACAA 54796 .......... .......... .......... .......... .......... .......... 510 AGTCTACCAC CTCTTGGAAG GATTTTGCCG TTGCCGCTAT CTGTAAGGCC GAAATCCGCA 54736 ||| |||| ||||| ||| |||||||||| | ||||||| |||||| || |||||||||| .GTCAACCAT TTCTTGCAAG GATTTTGCCG TAGCCGCTAC CTGTAACGCT GAAATCCGCA 569 ATTCTGACCT CAACCCCTTC ACAAACCGGC GAATTCGCTC TTGGGGACTG AAACATAATT 54676 | |||||||| |||||| ||| ||||| || | |||| | ||| ||| |||||| ||||| | || ACTCTGACCT CAACCCTTTC ACAAAACGAC GAATCCTCTC TTGTGGACTG AAACAAAGTT 629 GAGTGGCATA TCTAGATAGT GCACGGAACT TAGCCTCATA AGCATTAACC GACATCCTAC 54616 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||| ||| ||||||||| GAGTGGCATA TCTGGATAGT GCACGAAACT TAGCCTCATA TGCATTGACC TACATCCTAC 689 CTT 54613 ||| CTT 692 hqPGS_C08HBa0027D09.1-_SGN-E353359+ (56055 55539,54794 54613) ******************************************************************************** EST sequence 253 +strand 433 n (File: SGN-E352180+) 1 CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 61 GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 121 CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 181 ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 241 ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 301 TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 361 CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 421 GCCGCTGTTC TCC Predicted gene structure (within gDNA segment 55084 to 52263): Exon 1 54349 53919 ( 431 n); cDNA 1 431 ( 431 n); score: 0.907 MATCH C08HBa0027D09.1- SGN-E352180+ 0.907 431 0.995 C PGS_C08HBa0027D09.1-_SGN-E352180+ (54349 53919) Alignment (genomic DNA sequence = upper lines): CCCTTGAAGA CTGGGGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 54290 |||||||||| | || ||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 60 GTCAATATAG GCCCAGTAGT CAGACGTGGA AACGTGCCTA TTTCCAATGG AACATCCATG 54230 |||| ||||| |||||||||| || ||||||| || || |||| | | |||||| |||||||||| GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 120 CGGGGAGCCA TAGTAGCCGC ATGTTGTACC TCCGGAGCCT GAGGTGCTGG TGCAGAGAAC 54170 |||||||||| |||||||||| ||||||||| || | | || |||||| ||| ||||| ||| CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 180 ACTGGGGGTG TCTGGCCCTG ATCAGACAAC CCACTGAGAT AGGCGAGAAC CTGATTGATC 54110 ||||| |||| || || || |||||| || || || |||| | || ||||| |||||||||| ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 240 ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 54050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 300 TCCCCTTCTC TTATTACCTC CTCAGTCAAT GGAGGAGTCA CTGCCCTAGT ATCAGATGGG 53990 |||||||||| ||||||| || ||||||| | |||||||||| | |||||||| | |||||||| TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 360 CTAGGTGCTC GTCCTCTTCC CCTAGAGGAC GTCCTCCCAC GACCTCAACC ACGGCCTCTT 53930 || ||| ||| || ||||||| ||||| ||| |||||||||| |||||| ||| |||||| ||| CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 420 GCCGTTGTTC T 53919 |||| ||||| | GCCGCTGTTC T 431 hqPGS_C08HBa0027D09.1-_SGN-E352180+ (54349 53919) ******************************************************************************** EST sequence 130 -strand 554 n (File: SGN-E329287-) 1 AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 61 ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 121 CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 181 ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 241 GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 301 TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 361 CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 421 GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 481 CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 541 CAGATGGGCT AGGT Predicted gene structure (within gDNA segment 55588 to 52475): Exon 1 54537 53984 ( 554 n); cDNA 1 554 ( 554 n); score: 0.903 MATCH C08HBa0027D09.1- SGN-E329287- 0.903 554 1.000 C PGS_C08HBa0027D09.1-_SGN-E329287- (54537 53984) Alignment (genomic DNA sequence = upper lines): AGAATGAGGC CCAAGTCATA GGTGGTGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC 54478 ||||||| || |||||||||| ||||||||| || ||||||| |||||| | | |||||||||| AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 60 ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACGAA CTCAACACCA AACCGTTCTA 54418 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 120 CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAA GCATCCTCAG 54358 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 180 ATTCCGCACC CTTGAAGACT GGGGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT 54298 |||| |||| |||| ||||| | ||||||| |||||||||| |||||| ||| |||||||||| ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 240 GATCATTTGT CAATATAGGC CCAGTAGTCA GACGTGGAAA CGTGCCTATT TCCAATGGAA 54238 |||||||||| || ||||||| || ||||||| |||| ||||| ||| |||||| ||||||| GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 300 CATCCATGCG GGGAGCCATA GTAGCCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTGGTG 54178 ||| ||||| ||||| || | |||| ||||| |||||||||| |||||||||| |||||| ||| TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 360 CAGAGAACAC TGGGGGTGTC TGGCCCTGAT CAGACAACCC ACTGAGATAG GCGAGAACCT 54118 |||| ||||| ||| |||| ||||| |||| |||| ||||| || || || || ||||||| CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 420 GATTGATCAT CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGTTCAGTTT 54058 |||||||||| |||| ||||| |||||||||| ||| |||||| ||| |||||| |||||| | | GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 480 CCCCATCCTC CCCTTCTCTT ATTACCTCCT CAGTCAATGG AGGAGTCACT GCCCTAGTAT 53998 |||||||||| || |||||| | || |||| |||| ||| ||| ||||| ||| ||||| CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 540 CAGATGGGCT AGGT 53984 |||||||||| |||| CAGATGGGCT AGGT 554 hqPGS_C08HBa0027D09.1-_SGN-E329287- (54537 53984) ******************************************************************************** EST sequence 181 +strand 716 n (File: SGN-E577713+) 1 CGGTGGATAC CTAGGCACCC AGAGACGAGG AAGGGCGTAG TAATCGACGA AATGCTTCGG 61 GGAGTTGAAA ATAAGCATAG ATCCGGAGAT TCCCGAATAG GGCAACCTTT CGAACTGCTG 121 CTGAATCCAT GGGCAGGCAA GAGACAACCT GGCGAACTGA AACATCTTAG TAGCCAGAGG 181 AAAAGAAAGC AAATAAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 241 AAGCCATGCA ATCACAAACC AGAAGATTAC CTGTGATGAC AACATCAGAT GCCTCCGCTT 301 CACACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCGTT CGTCTGTCCG TTGCCCCTAC 361 CATGTTGTGA TGTAGTGGCC CAAGTTTGCC CATTACCTCT GCCGTTTTGG TGACCACCAT 421 TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 481 CTATTGGGGG TCTATAACTT TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC 541 ATCCATACCA TTCTCTGGAG TCAATCCTAG GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 601 GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTCAATTGG TCGGACTGAG TAACTTCCCG 661 AACCCTGTCC TCTAGTGTAA GAACCATTAA ACTCACCTCC CTTTCGAAGC CTTTTT Predicted gene structure (within gDNA segment 57921 to 54241): Exon 1 55446 55417 ( 30 n); cDNA 156 185 ( 30 n); score: 0.633 Intron 1 55416 55386 ( 31 n); Pd: 0.661 (s: 0), Pa: 0.181 (s: 0.90) Exon 2 55385 54851 ( 535 n); cDNA 186 716 ( 531 n); score: 0.961 MATCH C08HBa0027D09.1- SGN-E577713+ 0.961 565 0.789 C PGS_C08HBa0027D09.1-_SGN-E577713+ (55446 55417,55385 54851) Alignment (genomic DNA sequence = upper lines): ACTCACCCAC CGGAGTAGAA ACATGAATAG GCATATCAAG TAATTCACAA TGTAAATTTA 55387 ||| | || | ||||| | | ||| || ACTGAAACAT CTTAGTAGCC AGAGGAAAAG .......... .......... .......... 185 GACCATTAGC AAATGAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 55327 | | ||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| .A--A--AGC AAATAAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 240 AAGCCATGCA ATCACAAACA AGAAGATTAC CTGTGATGAC AGCATCAGAT GCCTCCGCTT 55267 |||||||||| ||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AAGCCATGCA ATCACAAACC AGAAGATTAC CTGTGATGAC AACATCAGAT GCCTCCGCTT 300 CAGACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCATT CGTCTGTCCG TTGCCCCTAC 55207 || ||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CACACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCGTT CGTCTGTCCG TTGCCCCTAC 360 CATGTTGTGA TGTAGTGGCC CCAGTTTGCC CATTACCTCT GCCGTTCTGG TGACCACCAT 55147 |||||||||| |||||||||| | |||||||| |||||||||| |||||| ||| |||||||||| CATGTTGTGA TGTAGTGGCC CAAGTTTGCC CATTACCTCT GCCGTTTTGG TGACCACCAT 420 TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 55087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 480 CTATTGGGGG TCTATAACTT GGTCTGGGAC AATTTCTCCT AATATGTCCA ATATCCCCAC 55027 |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| || ||||||| CTATTGGGGG TCTATAACTT TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC 540 ATCCATAACA TTCTTTGGAG TCGATCATAT GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 54967 ||||||| || |||| ||||| || ||| || |||||||||| |||||||||| |||||||||| ATCCATACCA TTCTCTGGAG TCAATCCTAG GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 600 GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTGAATTGG TCGGACTGAG TAACTTCCCG 54907 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTCAATTGG TCGGACTGAG TAACTTCCCG 660 AACCCTGTCC TCTAGTGTAA GAACCATTCA ACTCACCTCC CTTTCGAAGC CTTTTT 54851 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| AACCCTGTCC TCTAGTGTAA GAACCATTAA ACTCACCTCC CTTTCGAAGC CTTTTT 716 hqPGS_C08HBa0027D09.1-_SGN-E577713+ (55446 55417,55385 54851) ******************************************************************************** EST sequence 296 +strand 720 n (File: SGN-E356614+) 1 GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 61 CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 121 TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 181 CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 241 GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 301 CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 361 CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 421 CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 481 GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 541 TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 601 CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCCCT 661 CCCTTTCTCT ATTACTTCCT CAGTCAGTGG AAGAGTCACT GCCCTAGTAT CAGATGGGCT Predicted gene structure (within gDNA segment 56279 to 52676): Exon 1 54707 53988 ( 720 n); cDNA 1 720 ( 720 n); score: 0.922 MATCH C08HBa0027D09.1- SGN-E356614+ 0.922 720 1.000 C PGS_C08HBa0027D09.1-_SGN-E356614+ (54707 53988) Alignment (genomic DNA sequence = upper lines): GCGAATTCGC TCTTGGGGAC TGAAACATAA TTGAGTGGCA TATCTAGATA GTGCACGGAA 54648 |||||| ||| ||||| |||| ||||||| | |||||||||| ||||| |||| ||||||| || GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 60 CTTAGCCTCA TAAGCATTAA CCGACATCCT ACCTTTCTCT AGGCTCAGGA ACTCATCCCT 54588 |||||||||| |||||||||| | |||| ||| ||||| |||| ||||||| || |||||||||| CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 120 TTTCCTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATG AACAAGCTAG AGAATGAGGC 54528 |||| ||||| |||||||||| |||||||||| ||||||||| ||||| ||| |||||||||| TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 180 CCAAGTCATA GGTGGTGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTT 54468 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||| CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 240 GGCGTTCCCT TGAAACTGAT AAGTCACGAA CTCAACACCA AACCGTTCTA CTATACCCAT 54408 |||||||||| |||||||||| ||||||| || ||| |||||| |||||||||| |||||||||| GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 300 CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAA GCATCCTCAG ATTCCGCACC 54348 |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||| | |||| ||||| CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 360 CTTGAAGACT GGGGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 54288 ||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 420 CAATATAGGC CCAGTAGTCA GACGTGGAAA CGTGCCTATT TCCAATGGAA CATCCATGCG 54228 || |||||| ||||||||| ||||||||| |||||||| |||||||||| |||||||||| CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 480 GGGAGCCATA GTAGCCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTGGTG CAGAGAACAC 54168 |||||||||| |||||||||| ||||||| || | | || || |||| ||| | |||| ||||| GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 540 TGGGGGTGTC TGGCCCTGAT CAGACAACCC ACTGAGATAG GCGAGAACCT GATTGATCAT 54108 ||| |||| || || |||| |||| ||||| || ||||| || ||||||| |||||||||| TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 600 CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGTTCAGTTT CCCCAT-CCT 54049 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||| ||| CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCCCT 660 CCCCTTCTCT TATTACCTCC TCAGTCAATG GAGGAGTCAC TGCCCTAGTA TCAGATGGGC 53989 ||| ||||| |||||| ||| ||||||| || || ||||||| |||||||||| |||||||||| CCCTTTCTC- TATTACTTCC TCAGTCAGTG GAAGAGTCAC TGCCCTAGTA TCAGATGGGC 719 T 53988 | T 720 hqPGS_C08HBa0027D09.1-_SGN-E356614+ (54707 53988) ******************************************************************************** EST sequence 198 +strand 664 n (File: SGN-E352401+) 1 AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 61 AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 121 CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 181 AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 241 GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 301 GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 361 GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 421 TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 481 AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 541 AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 601 TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 661 TTCT Predicted gene structure (within gDNA segment 56249 to 53431): Exon 1 54704 54041 ( 664 n); cDNA 1 664 ( 664 n); score: 0.920 MATCH C08HBa0027D09.1- SGN-E352401+ 0.920 664 1.000 C PGS_C08HBa0027D09.1-_SGN-E352401+ (54704 54041) Alignment (genomic DNA sequence = upper lines): AATTCGCTCT TGGGGACTGA AACATAATTG AGTGGCATAT CTAGATAGTG CACGGAACTT 54645 ||| |||||| || ||||||| |||| | ||| |||||||||| || ||||||| |||| ||||| AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 60 AGCCTCATAA GCATTAACCG ACATCCTACC TTTCTCTAGG CTCAGGAACT CATCCCTTTT 54585 |||||||||| |||||||| | ||| |||||| || ||||||| |||| ||||| |||||||||| AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 120 CCTATCCCTC AAAGTCCGGG GGATATACTT CTCCATGAAC AAGCTAGAGA ATGAGGCCCA 54525 | |||||||| |||||||||| |||||||||| |||||| ||| || ||| ||| |||||||||| CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 180 AGTCATAGGT GGTGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTTGGC 54465 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 240 GTTCCCTTGA AACTGATAAG TCACGAACTC AACACCAAAC CGTTCTACTA TACCCATCTT 54405 |||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 300 GTGTAGTAGC TCATGACAGT CAACCAGAAA ATCGTAAGCA TCCTCAGATT CCGCACCCTT 54345 |||||||||| || ||||||| |||||||||| ||| |||||| ||||| |||| | |||||||| GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 360 GAAGACTGGG GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAA 54285 |||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 420 TATAGGCCCA GTAGTCAGAC GTGGAAACGT GCCTATTTCC AATGGAACAT CCATGCGGGG 54225 |||||| || ||||||| || ||||||| || |||||| ||| |||||||||| |||||||||| TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 480 AGCCATAGTA GCCGCATGTT GTACCTCCGG AGCCTGAGGT GCTGGTGCAG AGAACACTGG 54165 |||||||||| |||||||||| |||| || | | || ||||| | ||| |||| | |||||||| AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 540 GGGTGTCTGG CCCTGATCAG ACAACCCACT GAGATAGGCG AGAACCTGAT TGATCATCTC 54105 |||| || || ||||||| | ||||| || ||||| || |||||||||| |||||||||| AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 600 TGGGGTAGGT TGGGGTGGCA TTTCCTCATT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 54045 |||||||||| ||||||| || ||||| | |||||||||| |||||||||| |||||||||| TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 660 TTCT 54041 |||| TTCT 664 hqPGS_C08HBa0027D09.1-_SGN-E352401+ (54704 54041) ******************************************************************************** EST sequence 283 +strand 713 n (File: SGN-E349404+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAGG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATGC GGGGAGCCAT AGTAGCCGCA TGTCGTATCT CTG Predicted gene structure (within gDNA segment 56462 to 53028): Exon 1 54902 54198 ( 705 n); cDNA 7 711 ( 705 n); score: 0.879 MATCH C08HBa0027D09.1- SGN-E349404+ 0.879 705 0.989 C PGS_C08HBa0027D09.1-_SGN-E349404+ (54902 54198) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GTGTAAGAAC CATTCAACTC ACCTCCCTTT CGAAGCCTTT TTGATGTCGA 54843 |||||||||| | ||||||| |||| |||| |||||| || | || ||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGTTGTGGTG AAGTCGTCTG GCTTCACTCC TTCCACTTCT ATCACAAAGT CTACCACCTC 54783 ||| |||||| ||||| || | | |||||||| |||||| || |||||||||| |||||||||| TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGGAAGGAT TTTGCCGTTG CCGCTATCTG TAAGGCCGAA ATCCGCAATT CTGACCTCAA 54723 ||| |||||| |||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 CCCCTTCACA AACCGGCGAA TTCGCTCTTG GGGACTGAAA CATAATTGAG TGGCATATCT 54663 |||||||||| || ||||| | | || ||||| ||||| ||| || | ||| | |||| ||||| CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 AGATAGTGCA CGGAACTTAG CCTCATAAGC ATTAACCGAC ATCCTACCTT TCTCTAGGCT 54603 |||||||| || || |||| ||||||| || || || | | ||||| || | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 CAGGAACTCA TCCCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATGAACAA 54543 || ||||||| |||||||||| |||| ||||| ||||| ||| ||||| |||| |||||||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 GCTAGAGAAT GAGGCCCAAG TCATAGGTGG TGCCTCTATT GGTTGACACT CGATATGTGA 54483 ||||||||| || |||||| |||||||||| ||||||| || |||||||||| | | |||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACGAACTCAA CACCAAACCG 54423 ||||||||| || ||||||| ||||||| || |||||| || |||||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACAGTCA ACCAGAAAAT CGTAAGCATC 54363 |||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| | |||||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 546 CTCAGATTCC GCACCCTTGA AGACTGGGGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 54303 |||||||| |||||||||| ||||||| || ||||| |||| |||||||||| |||||||||| TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAGTTC 606 ATGCTGATCA TTTGTCAATA TAGGCCCAGT AGTCAGACGT GGAAACGTGC CTATTTCCAA 54243 ||| ||||| ||||||| | |||||||||| |||||||||| ||||| |||| ||||| |||| ATGTTGATCG TTTGTCATAA TAGGCCCAGT AGTCAGACGT GGAAATGTGC CTATTCCCAA 666 TGGAACATCC ATGCGGGGAG CCATAGTAGC CGCATGTTGT ACCTC 54198 ||| |||| |||||||||| |||||||||| ||||||| || | ||| TGGTGCATCT ATGCGGGGAG CCATAGTAGC CGCATGTCGT ATCTC 711 hqPGS_C08HBa0027D09.1-_SGN-E349404+ (54902 54198) ******************************************************************************** EST sequence 248 +strand 679 n (File: SGN-E351625+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAAG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATG Predicted gene structure (within gDNA segment 56462 to 52990): Exon 1 54902 54230 ( 673 n); cDNA 7 679 ( 673 n); score: 0.875 MATCH C08HBa0027D09.1- SGN-E351625+ 0.875 673 0.991 C PGS_C08HBa0027D09.1-_SGN-E351625+ (54902 54230) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GTGTAAGAAC CATTCAACTC ACCTCCCTTT CGAAGCCTTT TTGATGTCGA 54843 |||||||||| | ||||||| |||| |||| |||||| || | || ||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGTTGTGGTG AAGTCGTCTG GCTTCACTCC TTCCACTTCT ATCACAAAGT CTACCACCTC 54783 ||| |||||| ||||| || | | |||||||| |||||| || |||||||||| |||||||||| TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGGAAGGAT TTTGCCGTTG CCGCTATCTG TAAGGCCGAA ATCCGCAATT CTGACCTCAA 54723 ||| |||||| |||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 CCCCTTCACA AACCGGCGAA TTCGCTCTTG GGGACTGAAA CATAATTGAG TGGCATATCT 54663 |||||||||| || ||||| | | || ||||| ||||| ||| || | ||| | |||| ||||| CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 AGATAGTGCA CGGAACTTAG CCTCATAAGC ATTAACCGAC ATCCTACCTT TCTCTAGGCT 54603 |||||||| || || |||| ||||||| || || || | | ||||| || | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 CAGGAACTCA TCCCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATGAACAA 54543 || ||||||| |||||||||| |||| ||||| ||||| ||| ||||| |||| |||||||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 GCTAGAGAAT GAGGCCCAAG TCATAGGTGG TGCCTCTATT GGTTGACACT CGATATGTGA 54483 ||||||||| || |||||| |||||||||| ||||||| || |||||||||| | | |||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACGAACTCAA CACCAAACCG 54423 ||||||||| || ||||||| ||||||| || |||||| || |||||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACAGTCA ACCAGAAAAT CGTAAGCATC 54363 |||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| | |||||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 546 CTCAGATTCC GCACCCTTGA AGACTGGGGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 54303 |||||||| |||||||||| ||||||| || ||||| |||| |||||||||| |||||||||| TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAGTTC 606 ATGCTGATCA TTTGTCAATA TAGGCCCAGT AGTCAGACGT GGAAACGTGC CTATTTCCAA 54243 ||| ||||| ||||||| | || ||||||| |||||||||| ||||| |||| ||||| |||| ATGTTGATCG TTTGTCATAA TAAGCCCAGT AGTCAGACGT GGAAATGTGC CTATTCCCAA 666 TGGAACATCC ATG 54230 ||| |||| ||| TGGTGCATCT ATG 679 hqPGS_C08HBa0027D09.1-_SGN-E351625+ (54902 54230) ******************************************************************************** EST sequence 305 +strand 612 n (File: SGN-E357065+) 1 GGGTTCTGTC CTCTAGAATA AGAACCATTA TACTCTCCTC CCCTTCTAAA CCTCTTCGAT 61 GTCGATGTCG TGGTGAAGTC ATCCGGTTTC ACTCCTTCCA CCTCAATCAC AAAGTCTACC 121 ACCTCTTGAA AGGATGTTGC TGTTGCCGCT ATCTGTAAGG CTGAAATCCG CAATTCTGAT 181 CTCAACCCCT TCACAAAACG GCGGATCCGT TCTTGTGGAC TAAAACAGAG TTGGGTGGCG 241 TATCTGGATA GTGCGCGAAA TTTAGCCTCA TACGCGTTTA CTGTCATCCT TCCCTGTTCA 301 AGACTCAAGA ACTCATCCCT TTTCCTATCT CTCAAAGTCC TTGGGATATA TTTCTCCATG 361 AACAAACTAG AGAATGATTC CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCAACA 421 TGTGAACGCC ACCACATCTT GGCGTTCCCT TGGAACTGAT AGCTCACGAA CTCGACGCCA 481 AACCTCTCTA CTATCCCCAT TTTGTGTAGT AGCTCATGAC AATCAACCAG AAAATCATAA 541 GCATCTTCAG ATTCTGCACC CTTGAAGACT GGAGGTTTCA GTTTCAAGAA CTTACTGAAA 601 AGTCATGTTG AT Predicted gene structure (within gDNA segment 56452 to 53605): Exon 1 54902 54295 ( 608 n); cDNA 6 612 ( 607 n); score: 0.875 MATCH C08HBa0027D09.1- SGN-E357065+ 0.875 608 0.993 C PGS_C08HBa0027D09.1-_SGN-E357065+ (54902 54295) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GTGTAAGAAC CATTCAACTC ACCTCCCTTT CGAAGCCTTT TTGATGTCGA 54843 |||||||||| | ||||||| |||| |||| |||||| || | || ||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 65 TGTTGTGGTG AAGTCGTCTG GCTTCACTCC TTCCACTTCT ATCACAAAGT CTACCACCTC 54783 ||| |||||| ||||| || | | |||||||| |||||| || |||||||||| |||||||||| TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 125 TTGGAAGGAT TTTGCCGTTG CCGCTATCTG TAAGGCCGAA ATCCGCAATT CTGACCTCAA 54723 ||| |||||| |||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 185 CCCCTTCACA AACCGGCGAA TTCGCTCTTG GGGACTGAAA CATAATTGAG TGGCATATCT 54663 |||||||||| || ||||| | | || ||||| ||||| ||| || | ||| | |||| ||||| CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 245 AGATAGTGCA CGGAACTTAG CCTCATAAGC ATTAACCGAC ATCCTACCTT TCTCTAGGCT 54603 |||||||| || || |||| ||||||| || || || | | ||||| || | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 305 CAGGAACTCA TCCCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATGAACAA 54543 || ||||||| |||||||||| |||| ||||| ||||| ||| ||||| |||| |||||||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 365 GCTAGAGAAT GAGGCCCAAG TCATAGGTGG TGCCTCTATT GGTTGACACT CGATATGTGA 54483 ||||||||| || |||||| |||||||||| ||||||| || |||||||||| | | |||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 425 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACGAACTCAA CACCAAACCG 54423 ||||||||| || ||||||| ||||||| || |||||| || |||||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 485 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACAGTCA ACCAGAAAAT CGTAAGCATC 54363 |||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| | |||||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 545 CTCAGATTCC GCACCCTTGA AGACTGGGGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 54303 |||||||| |||||||||| ||||||| || ||||| |||| |||||||||| ||||||| || TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAG-TC 604 ATGCTGAT 54295 ||| |||| ATGTTGAT 612 hqPGS_C08HBa0027D09.1-_SGN-E357065+ (54902 54295) ******************************************************************************** EST sequence 202 +strand 524 n (File: SGN-E352365+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAAT Predicted gene structure (within gDNA segment 56462 to 50841): Exon 1 54902 54387 ( 516 n); cDNA 7 522 ( 516 n); score: 0.868 MATCH C08HBa0027D09.1- SGN-E352365+ 0.868 516 0.985 C PGS_C08HBa0027D09.1-_SGN-E352365+ (54902 54387) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GTGTAAGAAC CATTCAACTC ACCTCCCTTT CGAAGCCTTT TTGATGTCGA 54843 |||||||||| | ||||||| |||| |||| |||||| || | || ||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGTTGTGGTG AAGTCGTCTG GCTTCACTCC TTCCACTTCT ATCACAAAGT CTACCACCTC 54783 ||| |||||| ||||| || | | |||||||| |||||| || |||||||||| |||||||||| TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGGAAGGAT TTTGCCGTTG CCGCTATCTG TAAGGCCGAA ATCCGCAATT CTGACCTCAA 54723 ||| |||||| |||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 CCCCTTCACA AACCGGCGAA TTCGCTCTTG GGGACTGAAA CATAATTGAG TGGCATATCT 54663 |||||||||| || ||||| | | || ||||| ||||| ||| || | ||| | |||| ||||| CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 AGATAGTGCA CGGAACTTAG CCTCATAAGC ATTAACCGAC ATCCTACCTT TCTCTAGGCT 54603 |||||||| || || |||| ||||||| || || || | | ||||| || | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 CAGGAACTCA TCCCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATGAACAA 54543 || ||||||| |||||||||| |||| ||||| ||||| ||| ||||| |||| |||||||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 GCTAGAGAAT GAGGCCCAAG TCATAGGTGG TGCCTCTATT GGTTGACACT CGATATGTGA 54483 ||||||||| || |||||| |||||||||| ||||||| || |||||||||| | | |||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACGAACTCAA CACCAAACCG 54423 ||||||||| || ||||||| ||||||| || |||||| || |||||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACA 54387 |||||||| ||||| |||| |||||||||| |||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACA 522 hqPGS_C08HBa0027D09.1-_SGN-E352365+ (54902 54387) ******************************************************************************** EST sequence 302 +strand 790 n (File: SGN-E356912+) 1 CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACTAG AAGATTACCT GTGATGACAG 61 CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCGTTTG 121 TCTGCCCATT GCCCCTACCA TGTTGTGATG TAGTGGCCCC AGTTTGCCCA TTACCTCTGC 181 CGTTTTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC AGAATAACGG CCTCTACCAT 241 GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG TCCAGGACAA TTTATCCTAA 301 TATGTCCAAT CTCCCCACAT CCATAACATT CTCTGGAGTC ACTCATAGGC CCCTTGGAGA 361 AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATGGGTC 421 GAGCCGAGTA ACCTCCGGAA CCTTGTCCTC TAGAGTAAGA ACCCTTAAAC TCACCTCCCT 481 TTCGAAACCT CTTTGATGTT GATGTCGTGG TGAAGTCGTC TGGCTTCACT CCTTCCACTT 541 CTATCACAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT TGCCGCTACC TGTAAGGCCG 601 AAATCCGCAA TTCTGACCTC AACCCCTTCA CAAACCGGAG AATCCGCTCT TGAGGACTGA 661 AACAGAGTTG AGTGGCATAT CCGGATAGTG CACGGAACTT AGCCTCATAA GCATTAACCG 721 ACATCCTACC TTGCTCTAGG CTCAGGAACT CATCTCTTTT CCTATCCCTC AAAGTCCGGG 781 GGATATACTT Predicted gene structure (within gDNA segment 55944 to 53945): Exon 1 55344 54555 ( 790 n); cDNA 1 790 ( 790 n); score: 0.947 MATCH C08HBa0027D09.1- SGN-E356912+ 0.947 790 1.000 C PGS_C08HBa0027D09.1-_SGN-E356912+ (55344 54555) Alignment (genomic DNA sequence = upper lines): CAGGATCAAA CAATACAGAA GCCATGCAAT CACAAACAAG AAGATTACCT GTGATGACAG 55285 |||||||||| |||||| ||| |||||||||| ||||||| || |||||||||| |||||||||| CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACTAG AAGATTACCT GTGATGACAG 60 CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCATTCG 55225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || | CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCGTTTG 120 TCTGTCCGTT GCCCCTACCA TGTTGTGATG TAGTGGCCCC AGTTTGCCCA TTACCTCTGC 55165 |||| || || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCCCATT GCCCCTACCA TGTTGTGATG TAGTGGCCCC AGTTTGCCCA TTACCTCTGC 180 CGTTCTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC AGAATAACGG CCTCTACCAT 55105 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTTTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC AGAATAACGG CCTCTACCAT 240 GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG TCTGGGACAA TTTCTCCTAA 55045 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| ||| |||||| GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG TCCAGGACAA TTTATCCTAA 300 TATGTCCAAT ATCCCCACAT CCATAACATT CTTTGGAGTC GATCATATGC CCCTCGGAGA 54985 |||||||||| ||||||||| |||||||||| || ||||||| ||||| || |||| ||||| TATGTCCAAT CTCCCCACAT CCATAACATT CTCTGGAGTC ACTCATAGGC CCCTTGGAGA 360 AGTGTTGACC GGTCTGAGGT GGTCCCCCAA CTACAGTCTG TAGTGAAGAC TGAATTGGTC 54925 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||| |||| AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATGGGTC 420 GGACTGAGTA ACTTCCCGAA CCCTGTCCTC TAGTGTAAGA ACCATTCAAC TCACCTCCCT 54865 | | ||||| || ||| ||| || ||||||| ||| |||||| ||| || ||| |||||||||| GAGCCGAGTA ACCTCCGGAA CCTTGTCCTC TAGAGTAAGA ACCCTTAAAC TCACCTCCCT 480 TTCGAAGCCT TTTTGATGTC GATGTTGTGG TGAAGTCGTC TGGCTTCACT CCTTCCACTT 54805 |||||| ||| |||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTCGAAACCT CTTTGATGTT GATGTCGTGG TGAAGTCGTC TGGCTTCACT CCTTCCACTT 540 CTATCACAAA GTCTACCACC TCTTGGAAGG ATTTTGCCGT TGCCGCTATC TGTAAGGCCG 54745 |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CTATCACAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT TGCCGCTACC TGTAAGGCCG 600 AAATCCGCAA TTCTGACCTC AACCCCTTCA CAAACCGGCG AATTCGCTCT TGGGGACTGA 54685 |||||||||| |||||||||| |||||||||| |||||||| | ||| |||||| || ||||||| AAATCCGCAA TTCTGACCTC AACCCCTTCA CAAACCGGAG AATCCGCTCT TGAGGACTGA 660 AACATAATTG AGTGGCATAT CTAGATAGTG CACGGAACTT AGCCTCATAA GCATTAACCG 54625 |||| | ||| |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| AACAGAGTTG AGTGGCATAT CCGGATAGTG CACGGAACTT AGCCTCATAA GCATTAACCG 720 ACATCCTACC TTTCTCTAGG CTCAGGAACT CATCCCTTTT CCTATCCCTC AAAGTCCGGG 54565 |||||||||| || ||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ACATCCTACC TTGCTCTAGG CTCAGGAACT CATCTCTTTT CCTATCCCTC AAAGTCCGGG 780 GGATATACTT 54555 |||||||||| GGATATACTT 790 hqPGS_C08HBa0027D09.1-_SGN-E356912+ (55344 54555) ******************************************************************************** EST sequence 289 +strand 698 n (File: SGN-E356209+) 1 TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCG TTCGTCTGTC CGTTGCCCCT 61 ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTGCCATTTT GGTGACCACC 121 ATTACCTCGA CCACCACGTC CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT 181 AGCTATTGGG GGTCTATAAC TTTGTCTGGG ACAATTTTTC CTAATATGTC CAATCTCCCC 241 ACATCCATAA CATTCTCTGG AGTCAAGCAT AGGCCCCTCG GAGAAGTGTT AACCGGTCTG 301 AGGTGGTCTC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC 361 CGAACCCTGT CCTCTAGTGT AAGAACCATT AAACTCACCT CCCTTCCGAA ACCTTTTTGA 421 TGTCGATGTT GTGGTGAAGT CGTCTGGCTT CACTCCTTCC ACTTCTATCA CAAAGTCTAC 481 CACTTCTTGG AAGGATTTTG CCGTTGCCGC TATCTGTAAG GACGAAATCC GCAATTCTGA 541 CCTCAACCCC TTCACAAACC GGCGAATCCG CTCTTGAGGA CTGAAACAGA GTTGAGTGGC 601 ATATCTGGAT AGTGCACGAA ACTTAGCCTC ATAAGCATTA ACCGACATCC TACCTTGCTC 661 TAGGCTCAAG AACTCATCCC TTTTCCTATC CCTCAAAG Predicted gene structure (within gDNA segment 55868 to 53961): Exon 1 55268 54571 ( 698 n); cDNA 1 698 ( 698 n); score: 0.964 MATCH C08HBa0027D09.1- SGN-E356209+ 0.964 698 1.000 C PGS_C08HBa0027D09.1-_SGN-E356209+ (55268 54571) Alignment (genomic DNA sequence = upper lines): TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCA TTCGTCTGTC CGTTGCCCCT 55209 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCG TTCGTCTGTC CGTTGCCCCT 60 ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTGCCGTTCT GGTGACCACC 55149 |||||||||| |||||||||| |||||||||| |||||||||| ||||| || | |||||||||| ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTGCCATTTT GGTGACCACC 120 ATTACCTCGA CCACCACGTC CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT 55089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACCTCGA CCACCACGTC CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT 180 AGCTATTGGG GGTCTATAAC TTGGTCTGGG ACAATTTCTC CTAATATGTC CAATATCCCC 55029 |||||||||| |||||||||| || ||||||| ||||||| || |||||||||| |||| ||||| AGCTATTGGG GGTCTATAAC TTTGTCTGGG ACAATTTTTC CTAATATGTC CAATCTCCCC 240 ACATCCATAA CATTCTTTGG AGTCGATCAT ATGCCCCTCG GAGAAGTGTT GACCGGTCTG 54969 |||||||||| |||||| ||| |||| | ||| | |||||||| |||||||||| ||||||||| ACATCCATAA CATTCTCTGG AGTCAAGCAT AGGCCCCTCG GAGAAGTGTT AACCGGTCTG 300 AGGTGGTCCC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC 54909 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGTCTC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC 360 CGAACCCTGT CCTCTAGTGT AAGAACCATT CAACTCACCT CCCTTTCGAA GCCTTTTTGA 54849 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| ||||||||| CGAACCCTGT CCTCTAGTGT AAGAACCATT AAACTCACCT CCCTTCCGAA ACCTTTTTGA 420 TGTCGATGTT GTGGTGAAGT CGTCTGGCTT CACTCCTTCC ACTTCTATCA CAAAGTCTAC 54789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCGATGTT GTGGTGAAGT CGTCTGGCTT CACTCCTTCC ACTTCTATCA CAAAGTCTAC 480 CACCTCTTGG AAGGATTTTG CCGTTGCCGC TATCTGTAAG GCCGAAATCC GCAATTCTGA 54729 ||| |||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CACTTCTTGG AAGGATTTTG CCGTTGCCGC TATCTGTAAG GACGAAATCC GCAATTCTGA 540 CCTCAACCCC TTCACAAACC GGCGAATTCG CTCTTGGGGA CTGAAACATA ATTGAGTGGC 54669 |||||||||| |||||||||| ||||||| || |||||| ||| |||||||| | ||||||||| CCTCAACCCC TTCACAAACC GGCGAATCCG CTCTTGAGGA CTGAAACAGA GTTGAGTGGC 600 ATATCTAGAT AGTGCACGGA ACTTAGCCTC ATAAGCATTA ACCGACATCC TACCTTTCTC 54609 |||||| ||| |||||||| | |||||||||| |||||||||| |||||||||| |||||| ||| ATATCTGGAT AGTGCACGAA ACTTAGCCTC ATAAGCATTA ACCGACATCC TACCTTGCTC 660 TAGGCTCAGG AACTCATCCC TTTTCCTATC CCTCAAAG 54571 |||||||| | |||||||||| |||||||||| |||||||| TAGGCTCAAG AACTCATCCC TTTTCCTATC CCTCAAAG 698 hqPGS_C08HBa0027D09.1-_SGN-E356209+ (55268 54571) ******************************************************************************** EST sequence 236 +strand 763 n (File: SGN-E214046+) 1 ACGAATAGGC ATATCAAGAA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 61 TACATAAGAA AACGTGGATC CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACAAG 121 AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTTA GACCGCCCAG GGAAAGCGTA 181 ACAATGGGCC CTATAGTTTG TTTGTCCATT GCCCCTACCA TGTCGTGATG TAGTGGCCCC 241 AGTTTGTCCA TTACCTCTGC CGTTTTGGTG ACCACCATTG CCTCGACCAC CACGTCCTCC 301 AAAATAACGG CCTCTACCAT GACAACCTCT ACCTCTAACT ATTGGGGGTC TATAACTTGG 361 TCCGGGAAAA TTTCTCCTAA TATGTCCAAT CTCCCCACAT CCATAACATT CTCTAGAGTC 421 ACTCATAGGC CCCTCGGAGA AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTTTG 481 TAGTGAAGAC TGAATGGGTC GAACTGAGTA ACCTCCAGAA CCTTGTCCTC TAGAGTAAGA 541 ACCCTTAAAC TCATCTCCCC TTTGAAACCT CATCGATGTC GATGTCGTGG TGAAGTCGTC 601 TGGTTTCACT CCTTCCACTT CTATCAAAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT 661 TGCCGCTACC TGTAAGGGCG AAATCCGCAA TTCTGACCTC AACCCCTTCA CAACCGGCGA 721 ATCCGCTCTT GAGGGACTGA ACAGAGTTGA GTGGCATATC TGG Predicted gene structure (within gDNA segment 56042 to 53602): Exon 1 55422 54663 ( 760 n); cDNA 3 761 ( 759 n); score: 0.930 MATCH C08HBa0027D09.1- SGN-E214046+ 0.930 760 0.996 C PGS_C08HBa0027D09.1-_SGN-E214046+ (55422 54663) Alignment (genomic DNA sequence = upper lines): GAATAGGCAT ATCAAGTAAT TCACAATGTA AATTTAGACC ATTAGCAAAT GAGGAAGATA 55363 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GAATAGGCAT ATCAAGAAAT TCACAATGTA AATTTAGACC ATTAGCAAAT GAGGAAGATA 62 CATAAGAAAA CGTGGATCCA GGATCAAACA ATACAGAAGC CATGCAATCA CAAACAAGAA 55303 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CATAAGAAAA CGTGGATCCA GGATCAAACA ATACGGAAGC CATGCAATCA CAAACAAGAA 122 GATTACCTGT GATGACAGCA TCAGATGCCT CCGCTTCAGA CCGCCCAGGG AAAGCGTAAC 55243 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| GATTACCTGT GATGACAGCA TCAGATGCCT CCGCTTTAGA CCGCCCAGGG AAAGCGTAAC 182 AATGGGCCCT ATCATTCGTC TGTCCGTTGC CCCTACCATG TTGTGATGTA GTGGCCCCAG 55183 |||||||||| || || || ||||| |||| |||||||||| | |||||||| |||||||||| AATGGGCCCT ATAGTTTGTT TGTCCATTGC CCCTACCATG TCGTGATGTA GTGGCCCCAG 242 TTTGCCCATT ACCTCTGCCG TTCTGGTGAC CACCATTACC TCGACCACCA CGTCCTCCAG 55123 |||| ||||| |||||||||| || ||||||| ||||||| || |||||||||| ||||||||| TTTGTCCATT ACCTCTGCCG TTTTGGTGAC CACCATTGCC TCGACCACCA CGTCCTCCAA 302 AATAACGGCC TCTACCATGA CCACCTCTAC CTCTAGCTAT TGGGGGTCTA TAACTTGGTC 55063 |||||||||| |||||||||| | |||||||| ||||| |||| |||||||||| |||||||||| AATAACGGCC TCTACCATGA CAACCTCTAC CTCTAACTAT TGGGGGTCTA TAACTTGGTC 362 TGGGACAATT TCTCCTAATA TGTCCAATAT CCCCACATCC ATAACATTCT TTGGAGTCGA 55003 |||| |||| |||||||||| |||||||| | |||||||||| |||||||||| | ||||| CGGGAAAATT TCTCCTAATA TGTCCAATCT CCCCACATCC ATAACATTCT CTAGAGTCAC 422 TCATATGCCC CTCGGAGAAG TGTTGACCGG TCTGAGGTGG TCCCCCAACT ACAGTCTGTA 54943 ||||| |||| |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| TCATAGGCCC CTCGGAGAAG TGTTGACCGG TCTGAGGTGG ACCCCCAACT ACAGTTTGTA 482 GTGAAGACTG AATTGGTCGG ACTGAGTAAC TTCCCGAACC CTGTCCTCTA GTGTAAGAAC 54883 |||||||||| ||| ||||| |||||||||| ||| ||||| ||||||||| | |||||||| GTGAAGACTG AATGGGTCGA ACTGAGTAAC CTCCAGAACC TTGTCCTCTA GAGTAAGAAC 542 CATTCAACTC ACCTCCCTTT CGAAGCCTTT TTGATGTCGA TGTTGTGGTG AAGTCGTCTG 54823 | || ||||| | ||||| || ||| ||| | |||||||| ||| |||||| |||||||||| CCTTAAACTC ATCTCCCCTT TGAAACCTCA TCGATGTCGA TGTCGTGGTG AAGTCGTCTG 602 GCTTCACTCC TTCCACTTCT ATCACAAAGT CTACCACCTC TTGGAAGGAT TTTGCCGTTG 54763 | |||||||| |||||||||| |||| ||||| ||||||| || |||||||||| |||||||||| GTTTCACTCC TTCCACTTCT ATCAAAAAGT CTACCACTTC TTGGAAGGAT TTTGCCGTTG 662 CCGCTATCTG TAAGGCCGAA ATCCGCAATT CTGACCTCAA CCCCTTCACA AACCGGCGAA 54703 |||||| ||| ||||| |||| |||||||||| |||||||||| ||||||||| |||||||||| CCGCTACCTG TAAGGGCGAA ATCCGCAATT CTGACCTCAA CCCCTTCAC- AACCGGCGAA 721 TTCGCTCTTG -GGGACTGAA ACATAATTGA GTGGCATATC T 54663 | |||||||| ||||||| | ||| | |||| |||||||||| | TCCGCTCTTG AGGGACTG-A ACAGAGTTGA GTGGCATATC T 761 hqPGS_C08HBa0027D09.1-_SGN-E214046+ (55422 54663) ******************************************************************************** EST sequence 227 +strand 533 n (File: SGN-E353805+) 1 GGATCAACAA TACGGAAGCC ATGCAATCAC AAACTAGAAG ATTACCTGTG ATGACAGCAT 61 CAGATGCCTC CGCTTCAGAC CGCCCAGGGA AAGCGTAACA ATGGGCCCTA TCGTTTGTCT 121 GCCCATTGCC CCTACCATGT TGTGATGTAG TGGCCCCAGT TTGCCCATTA CCTCTGCCGT 181 TTTGGTGACC ACCATTACCT CGACCACCAC GTCCTCCAGA ATAACGGCCT CTACCATGAC 241 CACCTCTACC TCTAGCTATT GGGGGTCTAT AACTTGGTCC AGGACAATTT ATCCTAATAT 301 GTCCAATCTC CCCACATCCA TAACATTCTC TGGAGTCACT CATAGGCCCC TTGGAGAAGT 361 GTTGACCGGT CTGAGGTGGA CCCCCAACTA CAGTCTGTAG TGAAGACTGA ATGGGTCGAG 421 CCGAGTAACC TCCGGAACCT TGTCCTCTAA AGTAAGAACC CTTAAACTCA CCTCCCTTTC 481 GAAACCTCTT TGATGTTGAT GTCGTGGTGA AGTCGTCTGG CTTCACTCCT TCC Predicted gene structure (within gDNA segment 56067 to 54199): Exon 1 55342 54809 ( 534 n); cDNA 1 533 ( 533 n); score: 0.938 MATCH C08HBa0027D09.1- SGN-E353805+ 0.938 534 1.002 C PGS_C08HBa0027D09.1-_SGN-E353805+ (55342 54809) Alignment (genomic DNA sequence = upper lines): GGATCAAACA ATACAGAAGC CATGCAATCA CAAACAAGAA GATTACCTGT GATGACAGCA 55283 ||||| |||| |||| ||||| |||||||||| ||||| |||| |||||||||| |||||||||| GGATC-AACA ATACGGAAGC CATGCAATCA CAAACTAGAA GATTACCTGT GATGACAGCA 59 TCAGATGCCT CCGCTTCAGA CCGCCCAGGG AAAGCGTAAC AATGGGCCCT ATCATTCGTC 55223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| || ||| TCAGATGCCT CCGCTTCAGA CCGCCCAGGG AAAGCGTAAC AATGGGCCCT ATCGTTTGTC 119 TGTCCGTTGC CCCTACCATG TTGTGATGTA GTGGCCCCAG TTTGCCCATT ACCTCTGCCG 55163 || || |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCCATTGC CCCTACCATG TTGTGATGTA GTGGCCCCAG TTTGCCCATT ACCTCTGCCG 179 TTCTGGTGAC CACCATTACC TCGACCACCA CGTCCTCCAG AATAACGGCC TCTACCATGA 55103 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGGTGAC CACCATTACC TCGACCACCA CGTCCTCCAG AATAACGGCC TCTACCATGA 239 CCACCTCTAC CTCTAGCTAT TGGGGGTCTA TAACTTGGTC TGGGACAATT TCTCCTAATA 55043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||| CCACCTCTAC CTCTAGCTAT TGGGGGTCTA TAACTTGGTC CAGGACAATT TATCCTAATA 299 TGTCCAATAT CCCCACATCC ATAACATTCT TTGGAGTCGA TCATATGCCC CTCGGAGAAG 54983 |||||||| | |||||||||| |||||||||| ||||||| ||||| |||| || ||||||| TGTCCAATCT CCCCACATCC ATAACATTCT CTGGAGTCAC TCATAGGCCC CTTGGAGAAG 359 TGTTGACCGG TCTGAGGTGG TCCCCCAACT ACAGTCTGTA GTGAAGACTG AATTGGTCGG 54923 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||| ||||| TGTTGACCGG TCTGAGGTGG ACCCCCAACT ACAGTCTGTA GTGAAGACTG AATGGGTCGA 419 ACTGAGTAAC TTCCCGAACC CTGTCCTCTA GTGTAAGAAC CATTCAACTC ACCTCCCTTT 54863 | ||||||| ||| ||||| ||||||||| |||||||| | || ||||| |||||||||| GCCGAGTAAC CTCCGGAACC TTGTCCTCTA AAGTAAGAAC CCTTAAACTC ACCTCCCTTT 479 CGAAGCCTTT TTGATGTCGA TGTTGTGGTG AAGTCGTCTG GCTTCACTCC TTCC 54809 |||| ||| | ||||||| || ||| |||||| |||||||||| |||||||||| |||| CGAAACCTCT TTGATGTTGA TGTCGTGGTG AAGTCGTCTG GCTTCACTCC TTCC 533 hqPGS_C08HBa0027D09.1-_SGN-E353805+ (55342 54809) ******************************************************************************** EST sequence 241 +strand 559 n (File: SGN-E244046+) 1 AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 61 AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 121 CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 181 CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 241 CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 301 CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 361 TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 421 GTTCATGCAT AAGTCTCTCA GAGAAGTGTT GACCGGTCGA AGGTGGACCC CCAACTACAG 481 TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 541 AAGCACCATT AAACTCACC Predicted gene structure (within gDNA segment 56082 to 54116): Exon 1 55428 54870 ( 559 n); cDNA 1 559 ( 559 n); score: 0.914 MATCH C08HBa0027D09.1- SGN-E244046+ 0.914 559 1.000 C PGS_C08HBa0027D09.1-_SGN-E244046+ (55428 54870) Alignment (genomic DNA sequence = upper lines): AAACATGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCATTA GCAAATGAGG 55369 ||||| |||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 60 AAGATACATA AGAAAACGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 55309 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 120 CAAGAAGATT ACCTGTGATG ACAGCATCAG ATGCCTCCGC TTCAGACCGC CCAGGGAAAG 55249 | | |||||| |||||||||| ||| |||||| || ||||||| |||||||||| |||||||||| CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 180 CGTAACAATG GGCCCTATCA TTCGTCTGTC CGTTGCCCCT ACCATGTTGT GATGTAGTGG 55189 |||||||||| |||||||||| ||| | |||| ||||||||| |||||||||| |||||||||| CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 240 CCCCAGTTTG CCCATTACCT CTGCCGTTCT GGTGACCACC ATTACCTCGA CCACCACGTC 55129 | |||||||| ||||| |||| | |||||| | |||||||||| ||| |||||| || ||||||| CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 300 CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT AGCTATTGGG GGTCTATAAC 55069 |||||||||| |||| |||| |||||||||| |||||||||| | | |||| ||||| |||| CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 360 TTGGTCTGGG ACAATTTCTC CTAATATGTC CAATATCCCC ACATCCATAA CATTCTTTGG 55009 | || | || ||||| |||| ||||||||| |||| ||||| ||| ||||| || ||| ||| TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 420 AGTCGATCAT ATGCCCCTCG GAGAAGTGTT GACCGGTCTG AGGTGGTCCC CCAACTACAG 54949 || ||| | | | ||| |||||||||| |||||||| |||||| ||| |||||||||| GTTCATGCAT AAGTCTCTCA GAGAAGTGTT GACCGGTCGA AGGTGGACCC CCAACTACAG 480 TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 54889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 540 AAGAACCATT CAACTCACC 54870 ||| |||||| |||||||| AAGCACCATT AAACTCACC 559 hqPGS_C08HBa0027D09.1-_SGN-E244046+ (55428 54870) ******************************************************************************** EST sequence 281 +strand 543 n (File: SGN-E355026+) 1 GAACACATCC AAAAATTCTC AAACTACCAA AACTAATTCA ATTGAGGGTA CTTGGATAGT 61 GTCATCCTTG AGATGTGCCA AGAAGGATAG ACAACCCTTA CTAACCATCT TCTGAGCACA 121 AAGAAAGGAG ATAATACGCA CCGGATTGGA AGTGTAGTCA CCCTCCCACA CTAACGGATC 181 TGTCCCAGGC TTGGCTAACG TCACCGTTTT AGCATTACAA TCCAAGATCG CAAAATTGGG 241 AGAAAGCCAA GTCATACCCA GAATTACATC AAAGTCACCC ATTTCTAAAG TAACCAAATC 301 TAGATAAGTG TTGCTCCCCA CGAAATTCAC CAAACAAGAC CTATGTACCT TTTCAACTAT 361 CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG TCAAGTAATT CACAATGCAA 421 TTTTAGACCA TTAGCAAATG ATGAAGATAC ATATGAAAAC GTGGAGCCAG GGTCAAATAA 481 TACAGATGCC ATGCAATCAC AAACCAAGAG ATTACCTGTG ATAACAGCAT CAGACGCCTC 541 TGC Predicted gene structure (within gDNA segment 57662 to 53525): Exon 1 55811 55269 ( 543 n); cDNA 1 543 ( 543 n); score: 0.890 MATCH C08HBa0027D09.1- SGN-E355026+ 0.890 543 1.000 C PGS_C08HBa0027D09.1-_SGN-E355026+ (55811 55269) Alignment (genomic DNA sequence = upper lines): GAACACATCC AAAAACTCAC GAACTACTGA AACCGACTCA ATCGAAGGTA CTTGGGTAGT 55752 |||||||||| ||||| || | |||||| | ||| | ||| || || |||| ||||| |||| GAACACATCC AAAAATTCTC AAACTACCAA AACTAATTCA ATTGAGGGTA CTTGGATAGT 60 GTCATCCTTG AGATGTGCCA AGAAAGCTAA ACACCCTTTA CTAATCATTT TCTTAGCACG 55692 |||||||||| |||||||||| |||| | || ||| || ||| |||| ||| | ||| ||||| GTCATCCTTG AGATGTGCCA AGAAGGATAG ACAACCCTTA CTAACCATCT TCTGAGCACA 120 AAGAAAGGAG ACGATGTGGA CCGGATTGGA AGTGTAGTCA CCCTCCCACA CTAACGGGTC 55632 |||||||||| | || | | |||||||||| |||||||||| |||||||||| ||||||| || AAGAAAGGAG ATAATACGCA CCGGATTGGA AGTGTAGTCA CCCTCCCACA CTAACGGATC 180 TGTCCCAGGC TTGGCTAACG TCACCGTTTT AGCATTACAA TCCAAGATTG CAAATTGCGG 55572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||| | || TGTCCCAGGC TTGGCTAACG TCACCGTTTT AGCATTACAA TCCAAGATCG CAAAATTGGG 240 AGAAAGCCAA GTCATACCCA GAATCACATC AAAATCGTCC ATTTCTAAGA TAACCAAATC 55512 |||||||||| |||||||||| |||| ||||| ||| || || |||||||| |||||||||| AGAAAGCCAA GTCATACCCA GAATTACATC AAAGTCACCC ATTTCTAAAG TAACCAAATC 300 TACATAGGTG TTGCTCCCCA CAAAGTTCAC CAAATAAGAC CTATACACCT TTTCAACTAC 55452 || ||| ||| |||||||||| | || ||||| |||| ||||| |||| |||| ||||||||| TAGATAAGTG TTGCTCCCCA CGAAATTCAC CAAACAAGAC CTATGTACCT TTTCAACTAT 360 CACAGACTCA CCCACCGGAG TAGAAACATG AATAGGCATA TCAAGTAATT CACAATGTAA 55392 |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| ||||||| || CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG TCAAGTAATT CACAATGCAA 420 ATTTAGACCA TTAGCAAATG AGGAAGATAC ATAAGAAAAC GTGGATCCAG GATCAAACAA 55332 ||||||||| |||||||||| | |||||||| ||| |||||| ||||| |||| | ||||| || TTTTAGACCA TTAGCAAATG ATGAAGATAC ATATGAAAAC GTGGAGCCAG GGTCAAATAA 480 TACAGAAGCC ATGCAATCAC AAACAAGAAG ATTACCTGTG ATGACAGCAT CAGATGCCTC 55272 |||||| ||| |||||||||| |||| | || |||||||||| || ||||||| |||| ||||| TACAGATGCC ATGCAATCAC AAACCAAGAG ATTACCTGTG ATAACAGCAT CAGACGCCTC 540 CGC 55269 || TGC 543 hqPGS_C08HBa0027D09.1-_SGN-E355026+ (55811 55269) ******************************************************************************** EST sequence 278 +strand 761 n (File: SGN-E355244+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 GCAAATGAGG AAGATACANT AGAAAACGTG GATCCCAGGA TCAACAATAC AGAAGCCATG 721 CAATCACAAT CGAAAGATTA CCTGTGATGA CAGCATCTAA T Predicted gene structure (within gDNA segment 57547 to 53921): Exon 1 56038 55277 ( 762 n); cDNA 1 761 ( 761 n); score: 0.928 MATCH C08HBa0027D09.1- SGN-E355244+ 0.928 762 1.001 C PGS_C08HBa0027D09.1-_SGN-E355244+ (56038 55277) Alignment (genomic DNA sequence = upper lines): CGAAAACTCC CATCCTTCTT CTTTACAAAC AAAACCGAAG CACCCCAAGG GGATGCACTT 55979 || ||||||| |||||||||| ||| |||||| |||| || || |||||||||| ||||||||| CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 60 GGTCTAATGA AGCCTTTATT CAATAATTCT TGAAGTTGTG ACTTTAACTC TCTTAACTCC 55919 |||||||||| | ||||| | ||| || ||| |||||||| | ||||||||| ||||||||| GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 120 GCGGGAGCCA TTCTATAAGG GGGTACAGAG ATGGGACAAG TACCGGGTTC AAGATCAATA 55859 ||||||||| |||||||||| ||||| ||| ||||| | | | || ||||| |||||| ||| ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 180 CAGAAGTCAA TATCCCTATC CGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 55799 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 240 AACTCACGAA CTACTGAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 55739 ||||||| | ||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 300 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ATCATTTTCT TAGCACGAAG AAAGGAGACG 55679 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||| | TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 360 ATGTGGACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGGTCTGT CCCAGGCTTG 55619 ||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 420 GCTAACGTCA CCGTTTTAGC ATTACAATCC AAGATTGCAA ATTGCGGAGA AAGCCAAGTC 55559 ||||| |||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 480 ATACCCAGAA TCACATCAAA ATCGTCCATT TCTAAGATAA CCAAATCTAC ATAGGTGTTG 55499 |||||||||| | |||||||| ||| ||||| |||||||||| |||||||||| ||| |||||| ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 540 CTCCCCACAA AGTTCACCAA ATAAGACCTA TACACCTTTT CAACTACCAC AGACTCACCC 55439 |||||||||| |||||||||| | |||||||| || ||||||| |||||||||| |||||||||| CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 600 ACCGGAGTAG AAACATGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCATTA 55379 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||| ||| ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 660 GCAAATGAGG AAGATACATA AGAAAACGTG GAT-CCAGGA TCAAACAATA CAGAAGCCAT 55320 |||||||||| |||||||| |||||||||| ||| |||||| || ||||||| |||||||||| GCAAATGAGG AAGATACANT AGAAAACGTG GATCCCAGGA TC-AACAATA CAGAAGCCAT 719 GCAATCACAA ACAAGAAGAT TACCTGTGAT GACAGCATCA GAT 55277 |||||||||| | | ||||| |||||||||| ||||||||| || GCAATCACAA TCGA-AAGAT TACCTGTGAT GACAGCATCT AAT 761 hqPGS_C08HBa0027D09.1-_SGN-E355244+ (56038 55277) ******************************************************************************** EST sequence 230 +strand 331 n (File: SGN-E352716+) 1 GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 61 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA 121 AGTCTACATA AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 181 CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCATAAT 241 TTAATTTAAG ACCAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAT CCAGGGTCAA 301 ATAATACAAA AGCCATGCAA TCACAAAAAA A Predicted gene structure (within gDNA segment 56253 to 52805): Exon 1 55633 55306 ( 328 n); cDNA 3 330 ( 328 n); score: 0.902 MATCH C08HBa0027D09.1- SGN-E352716+ 0.902 328 0.991 C PGS_C08HBa0027D09.1-_SGN-E352716+ (55633 55306) Alignment (genomic DNA sequence = upper lines): TCTGTCCCAG GCTTGGCTAA CGTCACCGTT TTAGCATTAC AATCCAAGAT TGCAAATTGC 55574 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||| | TCTGTCCCAG GCTTGGCTAA CGTCACAGTT TTAGCATTAC AATCCAAGAT TGCAAAATTT 62 GGAGAAAGCC AAGTCATACC CAGAATCACA TCAAAATCGT CCATTTCTAA GATAACCAAA 55514 |||||||||| |||||||||| |||||| ||| |||||||| |||||||||| ||||||||| GGAGAAAGCC AAGTCATACC CAGAATTACA TCAAAATCAA CCATTTCTAA GATAACCAAG 122 TCTACATAGG TGTTGCTCCC CACAAAGTTC ACCAAATAAG ACCTATACAC CTTTTCAACT 55454 |||||||| | | |||||||| |||||| || |||| | || ||||||| || ||||||||| TCTACATAAG TATTGCTCCC CACAAAAGTC ACCAGACCAG ACCTATATAC TTTTTCAACT 182 ACCACAGACT CACCCACCGG AGTAGAAACA TGAATAGGCA TATCAAGTAA TTCACAATGT 55394 | |||||||| |||||||||| |||||||||| ||||||||| | ||||| || |||| ||| | ATCACAGACT CACCCACCGG AGTAGAAACA CGAATAGGCA TGTCAAGCAA TTCATAATTT 242 AAATTTAGAC CATTAGCAAA TGAGGAAGAT ACATAAGAAA ACGTGGATCC AGGATCAAAC 55334 || || |||| || ||||||| |||||||||| ||||| |||| | |||||||| ||| ||||| AATTTAAGAC CAGTAGCAAA TGAGGAAGAT ACATATGAAA ATGTGGATCC AGGGTCAAAT 302 AATACAGAAG CCATGCAATC ACAAACAA 55306 |||||| ||| |||||||||| ||||| || AATACAAAAG CCATGCAATC ACAAAAAA 330 hqPGS_C08HBa0027D09.1-_SGN-E352716+ (55633 55306) ******************************************************************************** EST sequence 72 -strand 659 n (File: SGN-E352117-) 1 CCCAAGGGGA TGCACTTGGC NTAATGAAGC CCTTACNTAA CAACTCTTGA AGTTGGGCCT 61 TTAACTCCCC CAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG GGGTGATCAC 121 CCGGCTCCAG ATCAATGCAA AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGGTCTG 181 CAGGAAACAC ATCCAGAAAC TCACGGACTA TCGAAACTGA CTCAATTGAA GGTACTTGGG 241 TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 301 CACAAAGAAA GGAGATGATA CGAACTGGAG TGGAAGTGTA GTCACCCTCC CACACTAACG 361 CATCTATCTC AGGCTTGGCC AACGTTACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 421 TTGGAGACAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTAT AGGATAACCA 481 AGTCTACATG AGTATTGCTC CCACAAATGT CACAAGACAA GACCTATACA CCTTTTCAAC 541 AATCACAGAC TCACCCACCG GAGTAGAACA CGAATAGGTA TGTCAAGCGA TTCACTATGT 601 AAATTAAGAA CAGTAGCAAA TGAGGAAGAT ACATATGAAA ATGTGGAGGC AGGATCAAA Predicted gene structure (within gDNA segment 57865 to 53917): Exon 1 55995 55335 ( 661 n); cDNA 1 659 ( 659 n); score: 0.862 MATCH C08HBa0027D09.1- SGN-E352117- 0.862 661 1.003 C PGS_C08HBa0027D09.1-_SGN-E352117- (55995 55335) Alignment (genomic DNA sequence = upper lines): CCCAAGGGGA TGCACTTGGT CTAATGAAGC CTTTATTCAA TAATTCTTGA AGTTGTGACT 55936 |||||||||| ||||||||| ||||||||| | ||| || || |||||| ||||| | || CCCAAGGGGA TGCACTTGGC NTAATGAAGC CCTTACNTAA CAACTCTTGA AGTTGGGCCT 60 TTAACTCTCT TAACTCCGCG GGAGCCATTC TATAAGGGGG TACAGAGATG GGACAAGTAC 55876 ||||||| | ||||| ||| |||||||||| |||||||||| || || ||| || | || TTAACTCCCC CAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG GGGTGATCAC 120 CGGGTTCAAG ATCAATACAG AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGATCTG 55816 | || || || |||||| || |||||||||| |||||||||| |||||||||| ||||| |||| CCGGCTCCAG ATCAATGCAA AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGGTCTG 180 CAGGGAACAC ATCCAAAAAC TCACGAACTA CTGAAACCGA CTCAATCGAA GGTACTTGGG 55756 |||| ||||| ||||| |||| ||||| |||| ||||| || |||||| ||| |||||||||| CAGGAAACAC ATCCAGAAAC TCACGGACTA TCGAAACTGA CTCAATTGAA GGTACTTGGG 240 TAGTGTCATC CTTGAGATGT GCCAAGAAAG CTAAACACCC TTTACTAATC ATTTTCTTAG 55696 |||| ||||| | |||| ||| |||||||||| |||||||||| |||||||| | ||| |||||| TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 300 CACGAAGAAA GGAGACGATG TGGACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG 55636 ||| |||||| ||||| ||| | || ||| |||||||||| |||||||||| |||||||||| CACAAAGAAA GGAGATGATA CGAACTGGAG TGGAAGTGTA GTCACCCTCC CACACTAACG 360 GGTCTGTCCC AGGCTTGGCT AACGTCACCG TTTTAGCATT ACAATCCAAG ATTGCAAATT 55576 ||| || | ||||||||| ||||| || | |||||||||| |||||||||| |||||||| | CATCTATCTC AGGCTTGGCC AACGTTACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 420 GCGGAGAAAG CCAAGTCATA CCCAGAATCA CATCAAAATC GTCCATTTCT AAGATAACCA 55516 ||||| || |||||||||| |||||||| | |||| || || |||||| | | |||||||| TTGGAGACAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTAT AGGATAACCA 480 AATCTACATA GGTGTTGCTC CCCACAAAGT TCACCAAATA AGACCTATAC ACCTTTTCAA 55456 | ||||||| || ||||| |||||||| |||| | | | |||||||||| |||||||||| AGTCTACATG AGTATTGCT- CCCACAAATG TCACAAGACA AGACCTATAC ACCTTTTCAA 539 CTACCACAGA CTCACCCACC GGAGTAGAAA CATGAATAGG CATATCAAGT AATTCACAAT 55396 | | |||||| |||||||||| ||||||| || || ||||||| || ||||| |||||| || CAATCACAGA CTCACCCACC GGAGTAG-AA CACGAATAGG TATGTCAAGC GATTCACTAT 598 GTAAATTTAG ACCATTAGCA AATGAGGAAG ATACATAAGA AAACGTGGAT CCAGGATCAA 55336 ||||||| || | || ||||| |||||||||| ||||||| || ||| ||||| ||||||||| GTAAATTAAG AACAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAG GCAGGATCAA 658 A 55335 | A 659 hqPGS_C08HBa0027D09.1-_SGN-E352117- (55995 55335) ******************************************************************************** EST sequence 239 +strand 661 n (File: SGN-E351414+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 G Predicted gene structure (within gDNA segment 57547 to 54723): Exon 1 56038 55378 ( 661 n); cDNA 1 661 ( 661 n); score: 0.933 MATCH C08HBa0027D09.1- SGN-E351414+ 0.933 661 1.000 C PGS_C08HBa0027D09.1-_SGN-E351414+ (56038 55378) Alignment (genomic DNA sequence = upper lines): CGAAAACTCC CATCCTTCTT CTTTACAAAC AAAACCGAAG CACCCCAAGG GGATGCACTT 55979 || ||||||| |||||||||| ||| |||||| |||| || || |||||||||| ||||||||| CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 60 GGTCTAATGA AGCCTTTATT CAATAATTCT TGAAGTTGTG ACTTTAACTC TCTTAACTCC 55919 |||||||||| | ||||| | ||| || ||| |||||||| | ||||||||| ||||||||| GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 120 GCGGGAGCCA TTCTATAAGG GGGTACAGAG ATGGGACAAG TACCGGGTTC AAGATCAATA 55859 ||||||||| |||||||||| ||||| ||| ||||| | | | || ||||| |||||| ||| ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 180 CAGAAGTCAA TATCCCTATC CGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 55799 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 240 AACTCACGAA CTACTGAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 55739 ||||||| | ||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 300 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ATCATTTTCT TAGCACGAAG AAAGGAGACG 55679 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||| | TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 360 ATGTGGACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGGTCTGT CCCAGGCTTG 55619 ||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 420 GCTAACGTCA CCGTTTTAGC ATTACAATCC AAGATTGCAA ATTGCGGAGA AAGCCAAGTC 55559 ||||| |||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 480 ATACCCAGAA TCACATCAAA ATCGTCCATT TCTAAGATAA CCAAATCTAC ATAGGTGTTG 55499 |||||||||| | |||||||| ||| ||||| |||||||||| |||||||||| ||| |||||| ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 540 CTCCCCACAA AGTTCACCAA ATAAGACCTA TACACCTTTT CAACTACCAC AGACTCACCC 55439 |||||||||| |||||||||| | |||||||| || ||||||| |||||||||| |||||||||| CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 600 ACCGGAGTAG AAACATGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCATTA 55379 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||| ||| ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 660 G 55378 | G 661 hqPGS_C08HBa0027D09.1-_SGN-E351414+ (56038 55378) ******************************************************************************** EST sequence 193 +strand 560 n (File: SGN-E242765+) 1 TGGTTCTAGC ATTAGGACAT CATAGCTCAT TTGATTATTT CTCATCTCAT AATTAGTATT 61 TAGTATTCCC TCAATTTAAT AATTTCATTA AAGTGTTCAT AGAGACTTAT CTCTTCATTA 121 GCTTTACACT ATAAAAGGTG AGTAAGTGTT GGTAATATTT ACTTAGGCTT ATTTGCTATT 181 GAAACCGACT CAATCGAAGG TACTTGGGTA GTGTCATCAT TGAGATGTGC TAAGAAAGAT 241 AAACACCTTT TACTAATCAT TTTCTTAGCA AGAAGAAAGG AGACGATGCG GACCGGATTG 301 GAAGTGTAGT CACCCTCTCA CACTAACGGG TCTATCCCAG GCTTGGCTAA CGTCACCGTT 361 TTAGCATTAC AATCCAAGAT TGCAAATTGC GGAGAAAGCA AAGTCATACC CAGAATCACA 421 TCAAAATCAT CCATTGCCAA GATAACCAAA TCTACATAAG TGTTGCTCCC CACAAAGTTT 481 ACGACACAAG ACCTATATAC TTTTTCAACT ACCTCAGACT CACCCACCGG AGTAGAAACA 541 CGAATAGGCA TATCAAGAAA Predicted gene structure (within gDNA segment 58174 to 54767): Exon 1 55787 55404 ( 384 n); cDNA 177 560 ( 384 n); score: 0.940 MATCH C08HBa0027D09.1- SGN-E242765+ 0.940 384 0.686 C PGS_C08HBa0027D09.1-_SGN-E242765+ (55787 55404) Alignment (genomic DNA sequence = upper lines): TACTGAAACC GACTCAATCG AAGGTACTTG GGTAGTGTCA TCCTTGAGAT GTGCCAAGAA 55728 || ||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| TATTGAAACC GACTCAATCG AAGGTACTTG GGTAGTGTCA TCATTGAGAT GTGCTAAGAA 236 AGCTAAACAC CCTTTACTAA TCATTTTCTT AGCACGAAGA AAGGAGACGA TGTGGACCGG 55668 || ||||||| | |||||||| |||||||||| |||| ||||| |||||||||| || ||||||| AGATAAACAC CTTTTACTAA TCATTTTCTT AGCAAGAAGA AAGGAGACGA TGCGGACCGG 296 ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGGTCTGTC CCAGGCTTGG CTAACGTCAC 55608 |||||||||| |||||||||| | |||||||| ||||||| || |||||||||| |||||||||| ATTGGAAGTG TAGTCACCCT CTCACACTAA CGGGTCTATC CCAGGCTTGG CTAACGTCAC 356 CGTTTTAGCA TTACAATCCA AGATTGCAAA TTGCGGAGAA AGCCAAGTCA TACCCAGAAT 55548 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| CGTTTTAGCA TTACAATCCA AGATTGCAAA TTGCGGAGAA AGCAAAGTCA TACCCAGAAT 416 CACATCAAAA TCGTCCATTT CTAAGATAAC CAAATCTACA TAGGTGTTGC TCCCCACAAA 55488 |||||||||| || |||||| | |||||||| |||||||||| || ||||||| |||||||||| CACATCAAAA TCATCCATTG CCAAGATAAC CAAATCTACA TAAGTGTTGC TCCCCACAAA 476 GTTCACCAAA TAAGACCTAT ACACCTTTTC AACTACCACA GACTCACCCA CCGGAGTAGA 55428 ||| || | | ||||||||| | || ||||| ||||||| || |||||||||| |||||||||| GTTTACGACA CAAGACCTAT ATACTTTTTC AACTACCTCA GACTCACCCA CCGGAGTAGA 536 AACATGAATA GGCATATCAA GTAA 55404 |||| ||||| |||||||||| | || AACACGAATA GGCATATCAA GAAA 560 hqPGS_C08HBa0027D09.1-_SGN-E242765+ (55787 55404) ******************************************************************************** EST sequence 274 +strand 658 n (File: SGN-E355232+) 1 TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATAGTTACCT TGTTCAGTTG TCTGTAGTCT 61 ATGCACATTC TAAAACTTCC ATCCTTCTTC TTCACAAATA AAACTGGAGC ACCCCAAGGA 121 GATGCACTTG GTCTAATGAA GACCTTGCTC AACAACTCTT GAAGTTGAGC CTTTAACTCT 181 CTTAATTCGG CGGGAGCCAT TCTATAAGGG GGTATAGAAA TGGGGCGTGT GCCTGGTTCA 241 AGATCGATAC AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGAAAC 301 ACGTCCAAAA ACTCGCGGAC TACCGAAACC GACTCAATTG AGGGTACTTG AGTAGTGTCA 361 TCCTTGAGAT GTGCCAAGAA AGCTGAACAC CCTTTACTAA CCATTTTCTT AGCACGAAGA 421 AAGGATATGA TACGCACCAG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 481 CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATCGCAAA ATTTGGAGAA 541 AGCCAAGTCA TACCCAGAAT TACATCAATG TCACCCATTT CTAAAAAACC AAATCTACAT 601 AAGTGTTGCT CCCCACGAAA TTCNACAAAA CAGAACTATG TACCTTTTCA ACTACCAC Predicted gene structure (within gDNA segment 58921 to 53958): Exon 1 56107 55449 ( 659 n); cDNA 1 658 ( 658 n); score: 0.894 MATCH C08HBa0027D09.1- SGN-E355232+ 0.894 659 1.002 C PGS_C08HBa0027D09.1-_SGN-E355232+ (56107 55449) Alignment (genomic DNA sequence = upper lines): TCAATGCGGG GAAGAGGATA CTTGTTCTTT ATGGTTACCT TGTTTAGTTA TCTGTAGTCT 56048 |||||||| | |||||||||| ||||||||| || ||||||| |||| |||| |||||||||| TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATAGTTACCT TGTTCAGTTG TCTGTAGTCT 60 ATACACATTC GAAAACTCCC ATCCTTCTTC TTTACAAACA AAACCGAAGC ACCCCAAGGG 55988 || ||||||| |||||| || |||||||||| || ||||| | |||| | ||| ||||||||| ATGCACATTC TAAAACTTCC ATCCTTCTTC TTCACAAATA AAACTGGAGC ACCCCAAGGA 120 GATGCACTTG GTCTAATGAA GCCTTTATTC AATAATTCTT GAAGTTGTGA CTTTAACTCT 55928 |||||||||| |||||||||| | | || || || || |||| ||||||| | |||||||||| GATGCACTTG GTCTAATGAA GACCTTGCTC AACAACTCTT GAAGTTGAGC CTTTAACTCT 180 CTTAACTCCG CGGGAGCCAT TCTATAAGGG GGTACAGAGA TGGGACAAGT ACCGGGTTCA 55868 ||||| || | |||||||||| |||||||||| |||| ||| | |||| | || || |||||| CTTAATTCGG CGGGAGCCAT TCTATAAGGG GGTATAGAAA TGGGGCGTGT GCCTGGTTCA 240 AGATCAATAC AGAAGTCAAT ATCCCTATCC GGTGGCATAC CAGGAAGATC TGCAGGGAAC 55808 ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| AGATCGATAC AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGAAAC 300 ACATCCAAAA ACTCACGAAC TACTGAAACC GACTCAATCG AAGGTACTTG GGTAGTGTCA 55748 || ||||||| |||| || || ||| |||||| |||||||| | | |||||||| ||||||||| ACGTCCAAAA ACTCGCGGAC TACCGAAACC GACTCAATTG AGGGTACTTG AGTAGTGTCA 360 TCCTTGAGAT GTGCCAAGAA AGCTAAACAC CCTTTACTAA TCATTTTCTT AGCACGAAGA 55688 |||||||||| |||||||||| |||| ||||| |||||||||| ||||||||| |||||||||| TCCTTGAGAT GTGCCAAGAA AGCTGAACAC CCTTTACTAA CCATTTTCTT AGCACGAAGA 420 AAGGAGACGA TGTGGACCGG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGGTCTGTC 55628 ||||| | || | | ||| | |||||||||| |||||||||| |||||||||| ||| |||||| AAGGATATGA TACGCACCAG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 480 CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATTGCAAA TTGCGGAGAA 55568 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| | |||||| CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATCGCAAA ATTTGGAGAA 540 AGCCAAGTCA TACCCAGAAT CACATCAAAA TCGTCCATTT CTAAGATAAC CAAATCTACA 55508 |||||||||| |||||||||| ||||||| || |||||| |||| | ||| |||||||||| AGCCAAGTCA TACCCAGAAT TACATCAATG TCACCCATTT CTAA-AAAAC CAAATCTACA 599 TAGGTGTTGC TCCCCACAAA GTTCACCAAA TAAGACCTAT ACACCTTTTC AACTACCAC 55449 || ||||||| ||||||| || ||| |||| ||| |||| |||||||| ||||||||| TAAGTGTTGC TCCCCACGAA ATTCNACAAA ACAGAACTAT GTACCTTTTC AACTACCAC 658 hqPGS_C08HBa0027D09.1-_SGN-E355232+ (56107 55449) ******************************************************************************** EST sequence 287 +strand 679 n (File: SGN-E368762+) 1 GTCTCACCCA ATTCTTCACT GTCTCAATCT TACAAGGATC CACCATCACT CCATCCTTAG 61 AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 121 CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 181 TCTTACTATT AGAGTATATC AGTATATCAT CAATAAACAT GATGACAAAG AGATCCAAAT 241 ATGGCTTAAA ATCCCGTTCA TCAAGCTCAT GAACGCAGCA GGGGCATTCG TAAGACCAAA 301 AGACATCACT ACAAATTCGT AATGCCCATA CCTGGTTCTA AAAGCAGTCT TTGGCACATC 361 CGTTGCCCGT ATTTTCAATT GATGATAACC GGATCTCAAG TCAATCTTAG AGAAGACACA 421 AGCACCTTGT AACTGATCGA ACAAGTCATC AATGCGAGGA AGTGGATACT TGTTCTTAAT 481 AGTTACCTTG TTCAACTGCC GGTAGTCTAT GCACATCCGA AAACTCCCAT CCTTCTTCTT 541 CACAAACCAA ACCGGAGCAC CCCAAGGAGA TGCACTTGGT CTAATGAAGA CTTTGCTCAA 601 AAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCCGCG GGAGCCATTC TATAAGGGGG 661 TATAGAAATG GGGCGAGTG Predicted gene structure (within gDNA segment 57201 to 55114): Exon 1 56556 55878 ( 679 n); cDNA 1 678 ( 678 n); score: 0.922 MATCH C08HBa0027D09.1- SGN-E368762+ 0.922 679 1.000 C PGS_C08HBa0027D09.1-_SGN-E368762+ (56556 55878) Alignment (genomic DNA sequence = upper lines): GTCTTACCCA ATTCTTCACT GTCTCAATCT TAGAAGGATC CACCATCATT CCATCCTTAG 56497 |||| ||||| |||||||||| |||||||||| || ||||||| |||||||| | |||||||||| GTCTCACCCA ATTCTTCACT GTCTCAATCT TACAAGGATC CACCATCACT CCATCCTTAG 60 AAACCACGTG TCCCAAGAAG GACACTGCAT CTAGCCAAAA CTCACACTTA GAGAACTTGG 56437 |||||||||| ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 120 CATAAAGCTT TTTCTCCCTC AACATTTCCA ATACCATTCT CAAATGCTCT TCATGTTCCT 56377 |||||||||| |||||||||| |||||||| | |||| ||||| ||||||||| |||||||||| CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 180 TCTTGCTCTT TGAGTATACC AATATATCAT CAATAAATAC GATCACGAAG AGGTCCAAAT 56317 |||| || || ||||||| | | |||||||| ||||||| | ||| || ||| || ||||||| TCTTACTATT AGAGTATATC AGTATATCAT CAATAAACAT GATGACAAAG AGATCCAAAT 240 ATGGCTTAAA AATCCCATTC ATCAAGCTCA TGAACGCAGC AGGGGCATTC GTAAGACCAA 56257 ||||||| || |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTT-AA AATCCCGTTC ATCAAGCTCA TGAACGCAGC AGGGGCATTC GTAAGACCAA 299 AAGACATCAC TACAAATTCG TAATTCCCAT ACCTCGTTTG AAAAGCAGTC TTGGGCACAT 56197 |||||||||| |||||||||| |||| ||||| |||| ||| |||||||||| || ||||||| AAGACATCAC TACAAATTCG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC TTTGGCACAT 359 CCGTTGCCCG TATTTTCAAT TGATGATAAC CGGATCTCAA GTCAATCTTA GAGAAGACAC 56137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTGCCCG TATTTTCAAT TGATGATAAC CGGATCTCAA GTCAATCTTA GAGAAGACAC 419 AAGCACCTTG TAACTGATCG AACAAATCAT CAATGCGGGG AAGAGGATAC TTGTTCTTTA 56077 |||||||||| |||||||||| ||||| |||| ||||||| || ||| |||||| |||||||| | AAGCACCTTG TAACTGATCG AACAAGTCAT CAATGCGAGG AAGTGGATAC TTGTTCTTAA 479 TGGTTACCTT GTTTAGTTAT CTGTAGTCTA TACACATTCG AAAACTCCCA TCCTTCTTCT 56017 | |||||||| ||| | | | |||||||| | ||||| || |||||||||| |||||||||| TAGTTACCTT GTTCAACTGC CGGTAGTCTA TGCACATCCG AAAACTCCCA TCCTTCTTCT 539 TTACAAACAA AACCGAAGCA CCCCAAGGGG ATGCACTTGG TCTAATGAAG CCTTTATTCA 55957 | |||||| | ||||| |||| |||||||| | |||||||||| |||||||||| |||| ||| TCACAAACCA AACCGGAGCA CCCCAAGGAG ATGCACTTGG TCTAATGAAG ACTTTGCTCA 599 ATAATTCTTG AAGTTGTGAC TTTAACTCTC TTAACTCCGC GGGAGCCATT CTATAAGGGG 55897 | || ||||| |||||| | | |||||||||| |||||||||| |||||||||| |||||||||| AAAACTCTTG AAGTTGGGCC TTTAACTCTC TTAACTCCGC GGGAGCCATT CTATAAGGGG 659 GTACAGAGAT GGGACAAGT 55878 ||| ||| || ||| | ||| GTATAGAAAT GGGGCGAGT 678 hqPGS_C08HBa0027D09.1-_SGN-E368762+ (56556 55878) ******************************************************************************** EST sequence 195 +strand 712 n (File: SGN-E379315+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 541 CTTGTTCTTT ATGGTTACCT TGTTNCACTG CCGGTAGCCT ATGCACATCC GAAAACTCCA 601 ATCCTTCTTC TTTACAAACA AAACCGGAGC ACCCCAAGGA GATGCAGTTG GTCTAATGAA 661 GCCTTTGCTC ACAACTCTTT GAAGTGGTCT TTTAACTCTC TTAACTCTGC GG Predicted gene structure (within gDNA segment 57227 to 53974): Exon 1 56627 55915 ( 713 n); cDNA 1 712 ( 712 n); score: 0.923 MATCH C08HBa0027D09.1- SGN-E379315+ 0.923 713 1.001 C PGS_C08HBa0027D09.1-_SGN-E379315+ (56627 55915) Alignment (genomic DNA sequence = upper lines): GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 56568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 60 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAT 56508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 120 TCCATCCTTA GAAACCACGT GTCCCAAGAA GGACACTGCA TCTAGCCAAA ACTCACACTT 56448 |||||||||| |||||||||| |||||||| ||||||| || |||||||||| |||||||||| TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 180 AGAGAACTTG GCATAAAGCT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 56388 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 240 TTCATGTTCC TTCTTGCTCT TTGAGTATAC CAATATATCA TCAATAAATA CGATCACGAA 56328 |||||||||| | ||| || | | ||||||| || ||||||| |||||||||| ||||||| || TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 300 GAGGTCCAAA TATGGCTTAA AAATCCCATT CATCAAGCTC ATGAACGCAG CAGGGGCATT 56268 ||| |||||| |||||||||| ||||||| || || || ||| || ||||||| |||||||||| GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 360 CGTAAGACCA AAAGACATCA CTACAAATTC GTAATTCCCA TACCTCGTTT GAAAAGCAGT 56208 | |||||||| |||||||||| ||||||||| ||||| |||| ||||| ||| ||||||||| CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 420 CTTGGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 56148 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 480 AGAGAAGACA CAAGCACCTT GTAACTGATC GAACAAATCA TCAATGCGGG GAAGAGGATA 56088 ||| |||||| |||||||||| |||||||||| |||||| ||| | |||||| | |||||||||| AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 540 CTTGTTCTTT ATGGTTACCT TGTTTAGTTA TCTGTAGTCT ATACACATTC GAAAACTCCC 56028 |||||||||| |||||||||| |||| | | |||| || || ||||| | ||||||||| CTTGTTCTTT ATGGTTACCT TGTTNCACTG CCGGTAGCCT ATGCACATCC GAAAACTCCA 600 ATCCTTCTTC TTTACAAACA AAACCGAAGC ACCCCAAGGG GATGCACTTG GTCTAATGAA 55968 |||||||||| |||||||||| |||||| ||| ||||||||| |||||| ||| |||||||||| ATCCTTCTTC TTTACAAACA AAACCGGAGC ACCCCAAGGA GATGCAGTTG GTCTAATGAA 660 GCCTTTATTC AATAATTCTT GAAGTTGTGA CTTTAACTCT CTTAACTCCG CGG 55915 |||||| || | | | || ||||| || ||||||||| |||||||| | ||| GCCTTTGCTC ACAACTCTTT GAAGTGGT-C TTTTAACTCT CTTAACTCTG CGG 712 hqPGS_C08HBa0027D09.1-_SGN-E379315+ (56627 55915) ******************************************************************************** EST sequence 168 +strand 709 n (File: SGN-E578271+) 1 GTTCTTTATG GTTACCTTGT TTAGTTGTCT GTAGTCTATA TACATTCGAA AACTCCCATC 61 CTTCTTCTTT ACAAACAAAA CCGGAGCACC CAAGGGGATG CACTTGGTCT AATGAAGCCT 121 TTGTTGCTAC AAAGATATGA CCTATATATC ATATCTTGAC TGGTTCTTTA GATCCAGATA 181 ATGCGAAGTG ATGGGTTGGT TATTAGTTCT ATAGTTTTTA GTTCATACTA TGTGGGCTGG 241 GTTTTTTTAA TCCTAACCCT AACAAAACCC ACGAGTCACA CACTAAGCAT AGCAATTATA 301 TCAAATGGTC AATCGAATTT TTATTCAACC TTATAGAATT AAGAATTAGA AAGAATTAAG 361 AATTAGAAAT GTTCCCCTTG ATTAGAAAAA GAATGAATTG GTCTTTTTTT TTGTTCAATC 421 ATTGGATAGA AGGGAAAGAC AAGTAGTAAA ATTATTCCTC GTCTAGAAAT ATCCAAATTT 481 TGATGCCCAA TATTCCATAG ATAGTTCGAA CTGTATAAGA GCAATAATCA ATTTTAGCTC 541 GAATCGTTTG TAGGGGAACC CTGCCTTCTC TGATCCATTC GACACGTGCA ATTTCTTTTC 601 CGTCGATACG CCCCGCAATT TGTATTTGAA TTCCTTGTGT ATCCGCTTGT TCTGTTAATT 661 CAATAGCCTT TTTCATTGCT TTTCGAAATG AAACTCTATT CTTTAATTG Predicted gene structure (within gDNA segment 56684 to 48882): Exon 1 56084 55959 ( 126 n); cDNA 1 125 ( 125 n); score: 0.960 Intron 1 55958 49536 (6423 n); Pd: 0.000 (s: 0.94), Pa: 0.907 (s: 0) Exon 2 49535 49511 ( 25 n); cDNA 126 149 ( 24 n); score: 0.680 MATCH C08HBa0027D09.1- SGN-E578271+ 0.960 151 0.213 C PGS_C08HBa0027D09.1-_SGN-E578271+ (56084 55959,49535 49511) Alignment (genomic DNA sequence = upper lines): GTTCTTTATG GTTACCTTGT TTAGTTATCT GTAGTCTATA CACATTCGAA AACTCCCATC 56025 |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||| |||||||||| GTTCTTTATG GTTACCTTGT TTAGTTGTCT GTAGTCTATA TACATTCGAA AACTCCCATC 60 CTTCTTCTTT ACAAACAAAA CCGAAGCACC CCAAGGGGAT GCACTTGGTC TAATGAAGCC 55965 |||||||||| |||||||||| ||| |||| | |||||||||| |||||||||| |||||||||| CTTCTTCTTT ACAAACAAAA CCGGAGCA-C CCAAGGGGAT GCACTTGGTC TAATGAAGCC 119 TTTATTCAAT AATTCTTGAA GTTGTGACTT TAACTCTCTT AACTCCGCGG GAGCCATTCT 55905 ||| || TTTGTT.... .......... .......... .......... .......... .......... 125 ATAAGGGGGT ACAGAGATGG GACAAGTACC GGGTTCAAGA TCAATACAGA AGTCAATATC 55845 .......... .......... .......... .......... .......... .......... 125 CCTATCCGGT GGCATACCAG GAAGATCTGC AGGGAACACA TCCAAAAACT CACGAACTAC 55785 .......... .......... .......... .......... .......... .......... 125 TGAAACCGAC TCAATCGAAG GTACTTGGGT AGTGTCATCC TTGAGATGTG CCAAGAAAGC 55725 .......... .......... .......... .......... .......... .......... 125 TAAACACCCT TTACTAATCA TTTTCTTAGC ACGAAGAAAG GAGACGATGT GGACCGGATT 55665 .......... .......... .......... .......... .......... .......... 125 GGAAGTGTAG TCACCCTCCC ACACTAACGG GTCTGTCCCA GGCTTGGCTA ACGTCACCGT 55605 .......... .......... .......... .......... .......... .......... 125 TTTAGCATTA CAATCCAAGA TTGCAAATTG CGGAGAAAGC CAAGTCATAC CCAGAATCAC 55545 .......... .......... .......... .......... .......... .......... 125 ATCAAAATCG TCCATTTCTA AGATAACCAA ATCTACATAG GTGTTGCTCC CCACAAAGTT 55485 .......... .......... .......... .......... .......... .......... 125 CACCAAATAA GACCTATACA CCTTTTCAAC TACCACAGAC TCACCCACCG GAGTAGAAAC 55425 .......... .......... .......... .......... .......... .......... 125 ATGAATAGGC ATATCAAGTA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 55365 .......... .......... .......... .......... .......... .......... 125 TACATAAGAA AACGTGGATC CAGGATCAAA CAATACAGAA GCCATGCAAT CACAAACAAG 55305 .......... .......... .......... .......... .......... .......... 125 AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA 55245 .......... .......... .......... .......... .......... .......... 125 ACAATGGGCC CTATCATTCG TCTGTCCGTT GCCCCTACCA TGTTGTGATG TAGTGGCCCC 55185 .......... .......... .......... .......... .......... .......... 125 AGTTTGCCCA TTACCTCTGC CGTTCTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC 55125 .......... .......... .......... .......... .......... .......... 125 AGAATAACGG CCTCTACCAT GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG 55065 .......... .......... .......... .......... .......... .......... 125 TCTGGGACAA TTTCTCCTAA TATGTCCAAT ATCCCCACAT CCATAACATT CTTTGGAGTC 55005 .......... .......... .......... .......... .......... .......... 125 GATCATATGC CCCTCGGAGA AGTGTTGACC GGTCTGAGGT GGTCCCCCAA CTACAGTCTG 54945 .......... .......... .......... .......... .......... .......... 125 TAGTGAAGAC TGAATTGGTC GGACTGAGTA ACTTCCCGAA CCCTGTCCTC TAGTGTAAGA 54885 .......... .......... .......... .......... .......... .......... 125 ACCATTCAAC TCACCTCCCT TTCGAAGCCT TTTTGATGTC GATGTTGTGG TGAAGTCGTC 54825 .......... .......... .......... .......... .......... .......... 125 TGGCTTCACT CCTTCCACTT CTATCACAAA GTCTACCACC TCTTGGAAGG ATTTTGCCGT 54765 .......... .......... .......... .......... .......... .......... 125 TGCCGCTATC TGTAAGGCCG AAATCCGCAA TTCTGACCTC AACCCCTTCA CAAACCGGCG 54705 .......... .......... .......... .......... .......... .......... 125 AATTCGCTCT TGGGGACTGA AACATAATTG AGTGGCATAT CTAGATAGTG CACGGAACTT 54645 .......... .......... .......... .......... .......... .......... 125 AGCCTCATAA GCATTAACCG ACATCCTACC TTTCTCTAGG CTCAGGAACT CATCCCTTTT 54585 .......... .......... .......... .......... .......... .......... 125 CCTATCCCTC AAAGTCCGGG GGATATACTT CTCCATGAAC AAGCTAGAGA ATGAGGCCCA 54525 .......... .......... .......... .......... .......... .......... 125 AGTCATAGGT GGTGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTTGGC 54465 .......... .......... .......... .......... .......... .......... 125 GTTCCCTTGA AACTGATAAG TCACGAACTC AACACCAAAC CGTTCTACTA TACCCATCTT 54405 .......... .......... .......... .......... .......... .......... 125 GTGTAGTAGC TCATGACAGT CAACCAGAAA ATCGTAAGCA TCCTCAGATT CCGCACCCTT 54345 .......... .......... .......... .......... .......... .......... 125 GAAGACTGGG GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAA 54285 .......... .......... .......... .......... .......... .......... 125 TATAGGCCCA GTAGTCAGAC GTGGAAACGT GCCTATTTCC AATGGAACAT CCATGCGGGG 54225 .......... .......... .......... .......... .......... .......... 125 AGCCATAGTA GCCGCATGTT GTACCTCCGG AGCCTGAGGT GCTGGTGCAG AGAACACTGG 54165 .......... .......... .......... .......... .......... .......... 125 GGGTGTCTGG CCCTGATCAG ACAACCCACT GAGATAGGCG AGAACCTGAT TGATCATCTC 54105 .......... .......... .......... .......... .......... .......... 125 TGGGGTAGGT TGGGGTGGCA TTTCCTCATT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 54045 .......... .......... .......... .......... .......... .......... 125 TTCTCTTATT ACCTCCTCAG TCAATGGAGG AGTCACTGCC CTAGTATCAG ATGGGCTAGG 53985 .......... .......... .......... .......... .......... .......... 125 TGCTCGTCCT CTTCCCCTAG AGGACGTCCT CCCACGACCT CAACCACGGC CTCTTGCCGT 53925 .......... .......... .......... .......... .......... .......... 125 TGTTCTTCCT CGAGCCACAG CCCCAGGGGC TGGCTCAGTT GTTTCTTGTC TGGCCGGTGT 53865 .......... .......... .......... .......... .......... .......... 125 CGCTGCTGGC GCGGTCGTTG CTCTAGTTCT AACCATCTGC GAAATAGAGT GAAGATGGTC 53805 .......... .......... .......... .......... .......... .......... 125 AGATACCAAT TTGTATCACC TAGATACCAA TTGGATCCAA GTAATAGCAC GAAAGAAAGA 53745 .......... .......... .......... .......... .......... .......... 125 ATGAAAGAGT GAAATTTTCC TAAAGTCCTA TAGCCTCTCA AGGAAAAGTA AAGGCGTCCC 53685 .......... .......... .......... .......... .......... .......... 125 CCTACCGTTC CTTAAGACTC TACTAGACCT GTTCTTGTGT GATGAGACCA ACGAACCTAA 53625 .......... .......... .......... .......... .......... .......... 125 TGCTCTGATA CCAAGTTTGT CACGACCCAA ATCCGGGCCG CGACTGGCAC CCACACTTAC 53565 .......... .......... .......... .......... .......... .......... 125 GCTCCTATGT GAGCGAACCA ACCAATCTAA ACCTTAACAT TTCAAGGTAA TATCAACATA 53505 .......... .......... .......... .......... .......... .......... 125 AAGTAATGCG GAAGACTTAA ACTCATTAAT AAAATCAATA ACTATTATTA TTCAACATCT 53445 .......... .......... .......... .......... .......... .......... 125 ATTATTCCCC AAAATCTGGA AGTCATCATC ACAAGAACAT CTACTTTAAA CTACTAATTC 53385 .......... .......... .......... .......... .......... .......... 125 TAAGAGTTTC TAAGAAGCTA AAAATACATA AGAAGCTAGT CCATGCCGGG AGTTCAAGGC 53325 .......... .......... .......... .......... .......... .......... 125 ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC ATTAGCTCAC CCTGAAGATC 53265 .......... .......... .......... .......... .......... .......... 125 CGGTGTGACG AAGACTGGCT AGAATTACTG TTGAGTTGAG GACGACGGCA CGTTTGTTGC 53205 .......... .......... .......... .......... .......... .......... 125 ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT CAGTACAAAA CACGGGTACT 53145 .......... .......... .......... .......... .......... .......... 125 GAGTAGATAT CATCGGCCAA CTCAAAATAG AAAACAGTAT ATACCAAGTA ATATCATAAA 53085 .......... .......... .......... .......... .......... .......... 125 CTCAACTATG ATACTCAACA TGTAGCAACA ACAAGCACTA TATCATTAAC AATTACCGTC 53025 .......... .......... .......... .......... .......... .......... 125 AAGTCCACTC ACGAGGAATC AAGCCCCAAT ACCATACTCA TTTGGGAATC ATGTTCATTA 52965 .......... .......... .......... .......... .......... .......... 125 GATTGAGTAT ATTAACATCA AGATTCATTA TCTTTATTTC TCTTGTGTCG GTACGTGACA 52905 .......... .......... .......... .......... .......... .......... 125 CTCCGCTCCC TCATATTCAT TATTCCTCTT GTGTCGGTTC GTAACACCCC GATCCCCTAA 52845 .......... .......... .......... .......... .......... .......... 125 TTCTACGTGT CGATTCGTGA CACCCGATCC CCTAATTCTA CGTGTCGGTT CGTGACACCC 52785 .......... .......... .......... .......... .......... .......... 125 GATCCCCTAA TTCTACGTGT CGATTCATGA CACCCGATCC CCTAAATCTA CGTGTCGGTT 52725 .......... .......... .......... .......... .......... .......... 125 CGTGACACCC GATCCCCTAA TTCTACGTGT CGGTTAGTGA CACCCGATCC CCTAATTCTA 52665 .......... .......... .......... .......... .......... .......... 125 CGTGTCGGTT CGTGACACCC GATCCACTAA TATCATTCTG TAAATCATCA AGCCTTCTTT 52605 .......... .......... .......... .......... .......... .......... 125 ATACCAAGGC ATCCTCAATC CCATTACTTT AATTCATCAA GCCTTCTTCT ATACCAAGGC 52545 .......... .......... .......... .......... .......... .......... 125 ATCATCATTA ATAATGTATA TTAAAGTTTC TTTTCAAGAT TTGGGATTCA ATATTTTCAT 52485 .......... .......... .......... .......... .......... .......... 125 CATGCTTATC TTATCACAAT CACATAGTCA TATTCATGCA AGCGTACAAT TAAGCATATA 52425 .......... .......... .......... .......... .......... .......... 125 GCAGGGTTTA CAATATTATC AATACATATC ATTCTCTATT AAGAGTTTAC TACGAATATC 52365 .......... .......... .......... .......... .......... .......... 125 GTAAGAGAAA CCATAACCTA CCTCCACCGA AGAATTGAAT CAAGCAAGAA TTTTCCCAAA 52305 .......... .......... .......... .......... .......... .......... 125 GCTTTGTTTC TCCCTTCTCG TTCGATTCTC TCTCTCTCTC TCCTGTTCTT TCTATTTTCT 52245 .......... .......... .......... .......... .......... .......... 125 TTATTCAAAC CCTCTTTCTT TTACCCTAAT TAGTATATAA TTAGGAATAA AAGATGGCAA 52185 .......... .......... .......... .......... .......... .......... 125 TAATACCCCA CTAATTAACT TAGGGTTACC TCTTTTAACC CCTCAAGAAT TTTAGTTATT 52125 .......... .......... .......... .......... .......... .......... 125 AATATAAACC CACGAAATCT ATAATTAAGG AAAGAATAGT CCAAAAACGT CCTTTAAAAC 52065 .......... .......... .......... .......... .......... .......... 125 TTCACCAGAA ATCCGACTCT GCCTGGGATT TGTGCAACCT GTGACGGGCC GTCGTGCCTG 52005 .......... .......... .......... .......... .......... .......... 125 CGACGGTCCG TCCTGCATGT CGTCGCAAAG TTCAGAGAAT GGATTTTCAC TGAAGTCTCT 51945 .......... .......... .......... .......... .......... .......... 125 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTTAGAGA GTCGATTTTC AGTACCCAAT 51885 .......... .......... .......... .......... .......... .......... 125 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 51825 .......... .......... .......... .......... .......... .......... 125 TCCGTCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 51765 .......... .......... .......... .......... .......... .......... 125 CGACTAAACG GGTCGTTACA AAATTATTAT TTATTAAATA TTAATTAAAT TTCATATTAT 51705 .......... .......... .......... .......... .......... .......... 125 ATAGCTACCT TTTAAAAAAC AAAACCTAAA AATTAGGGAT TTGATTTTAA TTAATATCAT 51645 .......... .......... .......... .......... .......... .......... 125 ATTATATGGT TACCCAATAA CTACCCACCC TCATATCAAC CAATACTCTT TTATATTCCC 51585 .......... .......... .......... .......... .......... .......... 125 CCAATATACT TAACATCTCC CCTATTTACA TGCATCTCTT TCCACCATAT TAATTTTGCA 51525 .......... .......... .......... .......... .......... .......... 125 CGCTTTTTTT ACTTTTCTCT CTCTATTAAT CAATTAAAGG CAGCACATGT TTCTCTCTCT 51465 .......... .......... .......... .......... .......... .......... 125 ATTAATTAAT TAAAGATAGA AACTAGCTTT AAACTTATTT GTCAAAATCA GATTAAGCTT 51405 .......... .......... .......... .......... .......... .......... 125 AAACTTCTTA TTCAACTACA TCTCTATCAA TCTTCCACAA AATTAGGTTT TTTATTTTTC 51345 .......... .......... .......... .......... .......... .......... 125 GACCATCAAA TTTGCAATAT TGCATGATTT TCGGAAAAAA TCGTGTTGTA TAGATAACCA 51285 .......... .......... .......... .......... .......... .......... 125 AACAGGTTTG TTTCTTAAAG TTTTTTTTTC TCTGATTCCT TTGTCAAATT ATTTAATTTT 51225 .......... .......... .......... .......... .......... .......... 125 TATATGTTGT TGCTTGATTT TGGGAGAAGT TTACGTTGCA TAGATAATGC AGGTTTATTC 51165 .......... .......... .......... .......... .......... .......... 125 AAGTTTTACA TTTGTTTATG TCAAATTCTT TAATATTTAT TTAACTATAA ATTTTTAGGA 51105 .......... .......... .......... .......... .......... .......... 125 TCTGGATTGT TGGATACAAT GTATAAACCA AATATCCTAA GGAGATTCAC AAGAGGTACA 51045 .......... .......... .......... .......... .......... .......... 125 AACTATACCG GTAACTTCAT GGTTGAAATA CCATCTTTTG ATCTATGTAT AACTCAAATT 50985 .......... .......... .......... .......... .......... .......... 125 CAATCGCAAA TCTCAGGCTA TACATCTGCG ATGGAATTAG AGAAGAAGCC GAATGATGAA 50925 .......... .......... .......... .......... .......... .......... 125 CTAGTAAGGT CTAGTCCTAA AAGGAAAGTA GTGTCGACGG TGAAAGCAAT CGAAAAAAAA 50865 .......... .......... .......... .......... .......... .......... 125 TGTTACAAGA GGAGGAAAGT AAAAAAAGTC TGTTCCGGAC ATGATTGGAG AATCGGTTGT 50805 .......... .......... .......... .......... .......... .......... 125 TAATGAAGAA TAAGACGAAG TGAGTGAAGA ATCACATAGT TCATCAATTT TTTGTTCTTC 50745 .......... .......... .......... .......... .......... .......... 125 TTCTCTTCTT GGTGTGTGAA ATCAAGAGAC GATTTTGACT TGTCACAAAA ATTCAGCAGT 50685 .......... .......... .......... .......... .......... .......... 125 AGAGATCTTG TAACACTCAT CTCTGCATGT TGTATAAAAT ATATTTAACT ATATATATAT 50625 .......... .......... .......... .......... .......... .......... 125 ATATCATAAT ATATTAACTA TTGTATTTAA TTGTAGTATG TTTAAATGAA TATTTGCACT 50565 .......... .......... .......... .......... .......... .......... 125 TTATTAAATG TGTATGATTT TTGTGTAAAT TTCGATTGCA ATATGCAAAC ATATATGAAC 50505 .......... .......... .......... .......... .......... .......... 125 ATTGTATGAA AATGTATAAA TGTTGTACAA ATTATGAATG TCATATTGAA CTTTGATATA 50445 .......... .......... .......... .......... .......... .......... 125 TGTAACAGAA ACAAATGGTA TATATATGAA CATTGTATTA ATTCTATATG AACATTTTAT 50385 .......... .......... .......... .......... .......... .......... 125 GAATGACAGT AAAGTTCAAT GTATATATAT AATGTATAAA CATTGTATGA ATTATGAATC 50325 .......... .......... .......... .......... .......... .......... 125 TCATATCGAA CTTGGATATA TGTAACAGAA ACAAATGGTA CATAAATGAA CATTGTATGA 50265 .......... .......... .......... .......... .......... .......... 125 ATATTGTATG AACATTGTAT TAATACTATA TGAACATTTT ATGAATGACA GTATAGTTCA 50205 .......... .......... .......... .......... .......... .......... 125 ATGTATATTT ATAATGTATG AACATTGTAT GAATTATGAA TATCATATTG AACTTTGACA 50145 .......... .......... .......... .......... .......... .......... 125 TATGTAACAG AAACAAATGA TATATATATG ATATTTTTTT ACGAAACCAA ATTTTATAAA 50085 .......... .......... .......... .......... .......... .......... 125 TATCAATGAT AACAACTGCA CTCAATAAAA TAAAACGTGT TTCTAACATT CAAAACAACA 50025 .......... .......... .......... .......... .......... .......... 125 CAATAACAAA TGTAACATTA CGAAATCATT GTTTTTGCAC AGGATAATTT AAATATGTCT 49965 .......... .......... .......... .......... .......... .......... 125 TTCTATTGTG TCCAACTTGA CGACATCTAC TACAAGTCAT TTTTGTCCTT TTGAATTTCA 49905 .......... .......... .......... .......... .......... .......... 125 CGTCAGCAAA CCCCATCCAT CTTTCAAGTT TTGGTATATC CGCTGTACAA AATTAATAAA 49845 .......... .......... .......... .......... .......... .......... 125 AAACATATAT TCTAATTTCG TTTGAAACAT ATACTGTAAT TTTGAAAAAA AAATGAACTT 49785 .......... .......... .......... .......... .......... .......... 125 TCATACACAA ATGATACACG TTTTGTATAA TCTTCATACA CTAATAAAAA AAATTCAGAC 49725 .......... .......... .......... .......... .......... .......... 125 TTCAATGTTA CACAAATTTA TAATTAGTTC ATATAACCCA TACACACTTT ATACACAGTT 49665 .......... .......... .......... .......... .......... .......... 125 AACATATCAT TCACATTCCT ATACAATACT CAAATTAAAC AAACACAATA CATTTTCAAT 49605 .......... .......... .......... .......... .......... .......... 125 ACAAAGTTAA TATAAAAACA TATATTATAA TTTAAATAGA AACATATATT GTACGTCAAA 49545 .......... .......... .......... .......... .......... .......... 125 ATTTATCAGG TTACTAAAAA ATGAAGTGAA ATAT 49511 | ||| || | |||| | | |||| .........G CTACAAAGAT ATGACCT-AT ATAT 149 hqPGS_C08HBa0027D09.1-_SGN-E578271+ (56084 55959) ******************************************************************************** EST sequence 225 +strand 596 n (File: SGN-E375319+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 541 CTTGTTCTTT ATGGTTACCT TGTTCAACTG CCGGTAGCCT ATGCACATCC GAAAAC Predicted gene structure (within gDNA segment 57227 to 55134): Exon 1 56627 56032 ( 596 n); cDNA 1 596 ( 596 n); score: 0.936 MATCH C08HBa0027D09.1- SGN-E375319+ 0.936 596 1.000 C PGS_C08HBa0027D09.1-_SGN-E375319+ (56627 56032) Alignment (genomic DNA sequence = upper lines): GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 56568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 60 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAT 56508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 120 TCCATCCTTA GAAACCACGT GTCCCAAGAA GGACACTGCA TCTAGCCAAA ACTCACACTT 56448 |||||||||| |||||||||| |||||||| ||||||| || |||||||||| |||||||||| TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 180 AGAGAACTTG GCATAAAGCT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 56388 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 240 TTCATGTTCC TTCTTGCTCT TTGAGTATAC CAATATATCA TCAATAAATA CGATCACGAA 56328 |||||||||| | ||| || | | ||||||| || ||||||| |||||||||| ||||||| || TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 300 GAGGTCCAAA TATGGCTTAA AAATCCCATT CATCAAGCTC ATGAACGCAG CAGGGGCATT 56268 ||| |||||| |||||||||| ||||||| || || || ||| || ||||||| |||||||||| GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 360 CGTAAGACCA AAAGACATCA CTACAAATTC GTAATTCCCA TACCTCGTTT GAAAAGCAGT 56208 | |||||||| |||||||||| ||||||||| ||||| |||| ||||| ||| ||||||||| CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 420 CTTGGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 56148 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 480 AGAGAAGACA CAAGCACCTT GTAACTGATC GAACAAATCA TCAATGCGGG GAAGAGGATA 56088 ||| |||||| |||||||||| |||||||||| |||||| ||| | |||||| | |||||||||| AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 540 CTTGTTCTTT ATGGTTACCT TGTTTAGTTA TCTGTAGTCT ATACACATTC GAAAAC 56032 |||||||||| |||||||||| |||| | | | |||| || || ||||| | |||||| CTTGTTCTTT ATGGTTACCT TGTTCAACTG CCGGTAGCCT ATGCACATCC GAAAAC 596 hqPGS_C08HBa0027D09.1-_SGN-E375319+ (56627 56032) ******************************************************************************** EST sequence 165 +strand 737 n (File: SGN-E578078+) 1 GAACTCATAA TGCTCATACC TGGTCCGAAA AGCAGTCTTG GGCACATCTG CTGCTCGTAT 61 TTTCAATTGA TGATAACCAG ATCTCAAGTC GATTTTTGAG AAGGTACAAG CACCTTGTAA 121 CTGATCGAAC AAATCATCAA TGTGAGGAAG ATATTTTCGA AAATTCTCTC ACTATGGTGA 181 TTGACTCAAT TGGAGGAATA TCGGACTCAA GATCTTTGAC TCTTACAATA TGGTAAATTC 241 ACACTTTTGA GATTATTTTG CAATATTTTA AACAAGAGAT GATATGACCT TTAGGAATTA 301 AATTACTGCC ATTCCACTCT AAGACAGGTT CATTAGGAAA GTTGAATTTA ACAACTCTTG 361 TTCGACAGTC TATGGAAGCA TAACAAGCAT GCAACCAATC CATTCCCAAG ATAAAATAAA 421 AATCGACCAT ATCGAATTCC ACCAAATCCA CCCAAGTAAC TCTATTGGGG AAATATATAG 481 GATAACTCCT AAAGACTCTT CTAGCAACAA TGGAGTCACC TACCGGGGTT GTAACAAAAA 541 ATATTTTCTC AAAGGCCTGG CGTCGAATAT GAAGAGACAT ACTCACCCGT TATGGATGCA 601 ATAACATTGG TTTATCTCAT TAGTTTCACA GTCCATGAGC AACTTGAAAT GCATTTGATG 661 GATGTGGTTA CAACCTACCT TTATGGATCA TTTAAATATG AGATATACAT GAAAATTCCT 721 GAAGGATTTG CGATTGC Predicted gene structure (within gDNA segment 57077 to 48342): Exon 1 56242 56092 ( 151 n); cDNA 2 152 ( 151 n); score: 0.874 Intron 1 56091 55808 ( 284 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.60) Exon 2 55807 55417 ( 391 n); cDNA 153 544 ( 392 n); score: 0.527 Intron 2 55416 54581 ( 836 n); Pd: 0.661 (s: 0.60), Pa: 0.000 (s: 0) Exon 3 54580 54563 ( 18 n); cDNA 545 562 ( 18 n); score: 0.722 Intron 3 54562 49531 (5032 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 4 49530 49508 ( 23 n); cDNA 563 585 ( 23 n); score: 0.696 MATCH C08HBa0027D09.1- SGN-E578078+ 0.624 583 0.791 C PGS_C08HBa0027D09.1-_SGN-E578078+ (56242 56092,55807 55417,54580 54563,49530 49508) Alignment (genomic DNA sequence = upper lines): AATTCGTAAT TCCCATACCT CGTTTGAAAA GCAGTCTTGG GCACATCCGT TGCCCGTATT 56183 || || |||| | ||||||| || ||||| |||||||||| ||||||| | ||| |||||| AACTCATAAT GCTCATACCT GGTCCGAAAA GCAGTCTTGG GCACATCTGC TGCTCGTATT 61 TTCAATTGAT GATAACCGGA TCTCAAGTCA ATCTTAGAGA AGACACAAGC ACCTTGTAAC 56123 |||||||||| ||||||| || ||||||||| || || |||| || |||||| |||||||||| TTCAATTGAT GATAACCAGA TCTCAAGTCG ATTTTTGAGA AGGTACAAGC ACCTTGTAAC 121 TGATCGAACA AATCATCAAT GCGGGGAAGA GGATACTTGT TCTTTATGGT TACCTTGTTT 56063 |||||||||| |||||||||| | | |||||| TGATCGAACA AATCATCAAT GTGAGGAAGA T......... .......... .......... 152 AGTTATCTGT AGTCTATACA CATTCGAAAA CTCCCATCCT TCTTCTTTAC AAACAAAACC 56003 .......... .......... .......... .......... .......... .......... 152 GAAGCACCCC AAGGGGATGC ACTTGGTCTA ATGAAGCCTT TATTCAATAA TTCTTGAAGT 55943 .......... .......... .......... .......... .......... .......... 152 TGTGACTTTA ACTCTCTTAA CTCCGCGGGA GCCATTCTAT AAGGGGGTAC AGAGATGGGA 55883 .......... .......... .......... .......... .......... .......... 152 CAAGTACCGG GTTCAAGATC AATACAGAAG TCAATATCCC TATCCGGTGG CATACCAGGA 55823 .......... .......... .......... .......... .......... .......... 152 AGATCTGCAG GGAACACATC CAAAAACTCA CGAACTACTG AAACCGACTC AATCGAAGGT 55763 | | | |||| || | |||| | | ||||| ||| | ||| .......... .....ATTTT CGAAAATTCT CTCACTATGG TGATTGACTC AATTGGAGGA 197 ACTTGGGTAG TGTCATCCTT GAGATGTGCC AAGAAAGCTA A-ACACCCTT TACTAATCAT 55704 | | || ||| || || | | | || | | | | ||| ||| | || || ATATCGGACT CAAGATCTTT GA-CTCTTAC AATATGGTAA ATTCACACTT TTGAGATTAT 256 TTTCTTAGCA CGAAGAAAGG AGACGATGTG GACCGGATTG GAAGTGTAGT -C-ACCCTCC 55646 ||| | | | | | ||| ||| | |||| | | ||| | | | | || | | TTTGCAATAT TTTAAACAAG AGATGATAT- GACC-TTTAG GAATTAAATT ACTGCCATTC 314 CACACTAACG GGTCTGTCCC AGGCTTGGCT AACGTCACCG TTTTAGCATT ACAATCCAAG 55586 ||| |||| | ||| | || | || | | | ||| || | | CACTCTAAGA CAGGTTCATT AGGAAAGTTG AATTTAACAA CTCTTGTTCG ACAGTCTATG 374 ATTGCAAATT GCGGAGAAAG CCAAGTCATA CCCAGAATCA CATCAAAATC GTCCATTTCT 55526 ||| | | | | |||| ||| |||| || | || |||||| | |||| || GAAGCATAAC AAGCATGCAA CCAATCCATT CCCAAGATAA AATAAAAATC GACCATATCG 434 AAGATAACCA AATCTACATA GGTGTTGCTC CCCACAAAGT TCACCAAATA AGACCTATAC 55466 || |||| |||| || | || || || | | ||| | |||| | AATTCCACCA AATCCACCCA AGTAACTCTA TTGGGGAAAT ATATAGGATA ACTCCTAAAG 494 ACCTTTTCAA CTACCACAGA CTCACCCACC GGAGTAGAAA C-ATGAATAG GCATATCAAG 55407 || || | | || | || ||||| ||| || || | || | | |||| ACTCTTCTAG CAACAATGGA GTCACCTACC GGGGTTGTAA CAAAAAATAT .......... 544 TAATTCACAA TGTAAATTTA GACCATTAGC AAATGAGGAA GATACATAAG AAAACGTGGA 55347 .......... .......... .......... .......... .......... .......... 544 TCCAGGATCA AACAATACAG AAGCCATGCA ATCACAAACA AGAAGATTAC CTGTGATGAC 55287 .......... .......... .......... .......... .......... .......... 544 AGCATCAGAT GCCTCCGCTT CAGACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCATT 55227 .......... .......... .......... .......... .......... .......... 544 CGTCTGTCCG TTGCCCCTAC CATGTTGTGA TGTAGTGGCC CCAGTTTGCC CATTACCTCT 55167 .......... .......... .......... .......... .......... .......... 544 GCCGTTCTGG TGACCACCAT TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC 55107 .......... .......... .......... .......... .......... .......... 544 ATGACCACCT CTACCTCTAG CTATTGGGGG TCTATAACTT GGTCTGGGAC AATTTCTCCT 55047 .......... .......... .......... .......... .......... .......... 544 AATATGTCCA ATATCCCCAC ATCCATAACA TTCTTTGGAG TCGATCATAT GCCCCTCGGA 54987 .......... .......... .......... .......... .......... .......... 544 GAAGTGTTGA CCGGTCTGAG GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTGAATTGG 54927 .......... .......... .......... .......... .......... .......... 544 TCGGACTGAG TAACTTCCCG AACCCTGTCC TCTAGTGTAA GAACCATTCA ACTCACCTCC 54867 .......... .......... .......... .......... .......... .......... 544 CTTTCGAAGC CTTTTTGATG TCGATGTTGT GGTGAAGTCG TCTGGCTTCA CTCCTTCCAC 54807 .......... .......... .......... .......... .......... .......... 544 TTCTATCACA AAGTCTACCA CCTCTTGGAA GGATTTTGCC GTTGCCGCTA TCTGTAAGGC 54747 .......... .......... .......... .......... .......... .......... 544 CGAAATCCGC AATTCTGACC TCAACCCCTT CACAAACCGG CGAATTCGCT CTTGGGGACT 54687 .......... .......... .......... .......... .......... .......... 544 GAAACATAAT TGAGTGGCAT ATCTAGATAG TGCACGGAAC TTAGCCTCAT AAGCATTAAC 54627 .......... .......... .......... .......... .......... .......... 544 CGACATCCTA CCTTTCTCTA GGCTCAGGAA CTCATCCCTT TTCCTATCCC TCAAAGTCCG 54567 | | |||||| || .......... .......... .......... .......... ......TTTC TCAAAGGCCT 558 GGGGATATAC TTCTCCATGA ACAAGCTAGA GAATGAGGCC CAAGTCATAG GTGGTGCCTC 54507 || | GGCG...... .......... .......... .......... .......... .......... 562 TATTGGTTGA CACTCGATAT GTGACCGCCA CCACATTTTG GCGTTCCCTT GAAACTGATA 54447 .......... .......... .......... .......... .......... .......... 562 AGTCACGAAC TCAACACCAA ACCGTTCTAC TATACCCATC TTGTGTAGTA GCTCATGACA 54387 .......... .......... .......... .......... .......... .......... 562 GTCAACCAGA AAATCGTAAG CATCCTCAGA TTCCGCACCC TTGAAGACTG GGGGTTTCAA 54327 .......... .......... .......... .......... .......... .......... 562 TTTCAAGAAC TTACTGAAAA GTTCATGCTG ATCATTTGTC AATATAGGCC CAGTAGTCAG 54267 .......... .......... .......... .......... .......... .......... 562 ACGTGGAAAC GTGCCTATTT CCAATGGAAC ATCCATGCGG GGAGCCATAG TAGCCGCATG 54207 .......... .......... .......... .......... .......... .......... 562 TTGTACCTCC GGAGCCTGAG GTGCTGGTGC AGAGAACACT GGGGGTGTCT GGCCCTGATC 54147 .......... .......... .......... .......... .......... .......... 562 AGACAACCCA CTGAGATAGG CGAGAACCTG ATTGATCATC TCTGGGGTAG GTTGGGGTGG 54087 .......... .......... .......... .......... .......... .......... 562 CATTTCCTCA TTTTGCACTT GTTCAGTTTC CCCATCCTCC CCTTCTCTTA TTACCTCCTC 54027 .......... .......... .......... .......... .......... .......... 562 AGTCAATGGA GGAGTCACTG CCCTAGTATC AGATGGGCTA GGTGCTCGTC CTCTTCCCCT 53967 .......... .......... .......... .......... .......... .......... 562 AGAGGACGTC CTCCCACGAC CTCAACCACG GCCTCTTGCC GTTGTTCTTC CTCGAGCCAC 53907 .......... .......... .......... .......... .......... .......... 562 AGCCCCAGGG GCTGGCTCAG TTGTTTCTTG TCTGGCCGGT GTCGCTGCTG GCGCGGTCGT 53847 .......... .......... .......... .......... .......... .......... 562 TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA ATTTGTATCA 53787 .......... .......... .......... .......... .......... .......... 562 CCTAGATACC AATTGGATCC AAGTAATAGC ACGAAAGAAA GAATGAAAGA GTGAAATTTT 53727 .......... .......... .......... .......... .......... .......... 562 CCTAAAGTCC TATAGCCTCT CAAGGAAAAG TAAAGGCGTC CCCCTACCGT TCCTTAAGAC 53667 .......... .......... .......... .......... .......... .......... 562 TCTACTAGAC CTGTTCTTGT GTGATGAGAC CAACGAACCT AATGCTCTGA TACCAAGTTT 53607 .......... .......... .......... .......... .......... .......... 562 GTCACGACCC AAATCCGGGC CGCGACTGGC ACCCACACTT ACGCTCCTAT GTGAGCGAAC 53547 .......... .......... .......... .......... .......... .......... 562 CAACCAATCT AAACCTTAAC ATTTCAAGGT AATATCAACA TAAAGTAATG CGGAAGACTT 53487 .......... .......... .......... .......... .......... .......... 562 AAACTCATTA ATAAAATCAA TAACTATTAT TATTCAACAT CTATTATTCC CCAAAATCTG 53427 .......... .......... .......... .......... .......... .......... 562 GAAGTCATCA TCACAAGAAC ATCTACTTTA AACTACTAAT TCTAAGAGTT TCTAAGAAGC 53367 .......... .......... .......... .......... .......... .......... 562 TAAAAATACA TAAGAAGCTA GTCCATGCCG GGAGTTCAAG GCATCAAGAC ATGAAGGAGA 53307 .......... .......... .......... .......... .......... .......... 562 AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAAGA TCCGGTGTGA CGAAGACTGG 53247 .......... .......... .......... .......... .......... .......... 562 CTAGAATTAC TGTTGAGTTG AGGACGACGG CACGTTTGTT GCACTCCACA AATAACAAGA 53187 .......... .......... .......... .......... .......... .......... 562 AGAAAAACAT AAAAGTAGGG GTCAGTACAA AACACGGGTA CTGAGTAGAT ATCATCGGCC 53127 .......... .......... .......... .......... .......... .......... 562 AACTCAAAAT AGAAAACAGT ATATACCAAG TAATATCATA AACTCAACTA TGATACTCAA 53067 .......... .......... .......... .......... .......... .......... 562 CATGTAGCAA CAACAAGCAC TATATCATTA ACAATTACCG TCAAGTCCAC TCACGAGGAA 53007 .......... .......... .......... .......... .......... .......... 562 TCAAGCCCCA ATACCATACT CATTTGGGAA TCATGTTCAT TAGATTGAGT ATATTAACAT 52947 .......... .......... .......... .......... .......... .......... 562 CAAGATTCAT TATCTTTATT TCTCTTGTGT CGGTACGTGA CACTCCGCTC CCTCATATTC 52887 .......... .......... .......... .......... .......... .......... 562 ATTATTCCTC TTGTGTCGGT TCGTAACACC CCGATCCCCT AATTCTACGT GTCGATTCGT 52827 .......... .......... .......... .......... .......... .......... 562 GACACCCGAT CCCCTAATTC TACGTGTCGG TTCGTGACAC CCGATCCCCT AATTCTACGT 52767 .......... .......... .......... .......... .......... .......... 562 GTCGATTCAT GACACCCGAT CCCCTAAATC TACGTGTCGG TTCGTGACAC CCGATCCCCT 52707 .......... .......... .......... .......... .......... .......... 562 AATTCTACGT GTCGGTTAGT GACACCCGAT CCCCTAATTC TACGTGTCGG TTCGTGACAC 52647 .......... .......... .......... .......... .......... .......... 562 CCGATCCACT AATATCATTC TGTAAATCAT CAAGCCTTCT TTATACCAAG GCATCCTCAA 52587 .......... .......... .......... .......... .......... .......... 562 TCCCATTACT TTAATTCATC AAGCCTTCTT CTATACCAAG GCATCATCAT TAATAATGTA 52527 .......... .......... .......... .......... .......... .......... 562 TATTAAAGTT TCTTTTCAAG ATTTGGGATT CAATATTTTC ATCATGCTTA TCTTATCACA 52467 .......... .......... .......... .......... .......... .......... 562 ATCACATAGT CATATTCATG CAAGCGTACA ATTAAGCATA TAGCAGGGTT TACAATATTA 52407 .......... .......... .......... .......... .......... .......... 562 TCAATACATA TCATTCTCTA TTAAGAGTTT ACTACGAATA TCGTAAGAGA AACCATAACC 52347 .......... .......... .......... .......... .......... .......... 562 TACCTCCACC GAAGAATTGA ATCAAGCAAG AATTTTCCCA AAGCTTTGTT TCTCCCTTCT 52287 .......... .......... .......... .......... .......... .......... 562 CGTTCGATTC TCTCTCTCTC TCTCCTGTTC TTTCTATTTT CTTTATTCAA ACCCTCTTTC 52227 .......... .......... .......... .......... .......... .......... 562 TTTTACCCTA ATTAGTATAT AATTAGGAAT AAAAGATGGC AATAATACCC CACTAATTAA 52167 .......... .......... .......... .......... .......... .......... 562 CTTAGGGTTA CCTCTTTTAA CCCCTCAAGA ATTTTAGTTA TTAATATAAA CCCACGAAAT 52107 .......... .......... .......... .......... .......... .......... 562 CTATAATTAA GGAAAGAATA GTCCAAAAAC GTCCTTTAAA ACTTCACCAG AAATCCGACT 52047 .......... .......... .......... .......... .......... .......... 562 CTGCCTGGGA TTTGTGCAAC CTGTGACGGG CCGTCGTGCC TGCGACGGTC CGTCCTGCAT 51987 .......... .......... .......... .......... .......... .......... 562 GTCGTCGCAA AGTTCAGAGA ATGGATTTTC ACTGAAGTCT CTGTGACGGT CCGTCCTGCC 51927 .......... .......... .......... .......... .......... .......... 562 ATTCCGTCAC GAAGTTTAGA GAGTCGATTT TCAGTACCCA ATTTCAGATT TTCTAAGTGT 51867 .......... .......... .......... .......... .......... .......... 562 TTTGAAACGA GACCCTGCGA CGGTCCGTCG TGCCCATGAC GTTCCGTCGT GGGGTCCGTC 51807 .......... .......... .......... .......... .......... .......... 562 GCTTCTGCCA GTTTTTCCAG AATTGAAGTC TGTTGCTCAA AACGACTAAA CGGGTCGTTA 51747 .......... .......... .......... .......... .......... .......... 562 CAAAATTATT ATTTATTAAA TATTAATTAA ATTTCATATT ATATAGCTAC CTTTTAAAAA 51687 .......... .......... .......... .......... .......... .......... 562 ACAAAACCTA AAAATTAGGG ATTTGATTTT AATTAATATC ATATTATATG GTTACCCAAT 51627 .......... .......... .......... .......... .......... .......... 562 AACTACCCAC CCTCATATCA ACCAATACTC TTTTATATTC CCCCAATATA CTTAACATCT 51567 .......... .......... .......... .......... .......... .......... 562 CCCCTATTTA CATGCATCTC TTTCCACCAT ATTAATTTTG CACGCTTTTT TTACTTTTCT 51507 .......... .......... .......... .......... .......... .......... 562 CTCTCTATTA ATCAATTAAA GGCAGCACAT GTTTCTCTCT CTATTAATTA ATTAAAGATA 51447 .......... .......... .......... .......... .......... .......... 562 GAAACTAGCT TTAAACTTAT TTGTCAAAAT CAGATTAAGC TTAAACTTCT TATTCAACTA 51387 .......... .......... .......... .......... .......... .......... 562 CATCTCTATC AATCTTCCAC AAAATTAGGT TTTTTATTTT TCGACCATCA AATTTGCAAT 51327 .......... .......... .......... .......... .......... .......... 562 ATTGCATGAT TTTCGGAAAA AATCGTGTTG TATAGATAAC CAAACAGGTT TGTTTCTTAA 51267 .......... .......... .......... .......... .......... .......... 562 AGTTTTTTTT TCTCTGATTC CTTTGTCAAA TTATTTAATT TTTATATGTT GTTGCTTGAT 51207 .......... .......... .......... .......... .......... .......... 562 TTTGGGAGAA GTTTACGTTG CATAGATAAT GCAGGTTTAT TCAAGTTTTA CATTTGTTTA 51147 .......... .......... .......... .......... .......... .......... 562 TGTCAAATTC TTTAATATTT ATTTAACTAT AAATTTTTAG GATCTGGATT GTTGGATACA 51087 .......... .......... .......... .......... .......... .......... 562 ATGTATAAAC CAAATATCCT AAGGAGATTC ACAAGAGGTA CAAACTATAC CGGTAACTTC 51027 .......... .......... .......... .......... .......... .......... 562 ATGGTTGAAA TACCATCTTT TGATCTATGT ATAACTCAAA TTCAATCGCA AATCTCAGGC 50967 .......... .......... .......... .......... .......... .......... 562 TATACATCTG CGATGGAATT AGAGAAGAAG CCGAATGATG AACTAGTAAG GTCTAGTCCT 50907 .......... .......... .......... .......... .......... .......... 562 AAAAGGAAAG TAGTGTCGAC GGTGAAAGCA ATCGAAAAAA AATGTTACAA GAGGAGGAAA 50847 .......... .......... .......... .......... .......... .......... 562 GTAAAAAAAG TCTGTTCCGG ACATGATTGG AGAATCGGTT GTTAATGAAG AATAAGACGA 50787 .......... .......... .......... .......... .......... .......... 562 AGTGAGTGAA GAATCACATA GTTCATCAAT TTTTTGTTCT TCTTCTCTTC TTGGTGTGTG 50727 .......... .......... .......... .......... .......... .......... 562 AAATCAAGAG ACGATTTTGA CTTGTCACAA AAATTCAGCA GTAGAGATCT TGTAACACTC 50667 .......... .......... .......... .......... .......... .......... 562 ATCTCTGCAT GTTGTATAAA ATATATTTAA CTATATATAT ATATATCATA ATATATTAAC 50607 .......... .......... .......... .......... .......... .......... 562 TATTGTATTT AATTGTAGTA TGTTTAAATG AATATTTGCA CTTTATTAAA TGTGTATGAT 50547 .......... .......... .......... .......... .......... .......... 562 TTTTGTGTAA ATTTCGATTG CAATATGCAA ACATATATGA ACATTGTATG AAAATGTATA 50487 .......... .......... .......... .......... .......... .......... 562 AATGTTGTAC AAATTATGAA TGTCATATTG AACTTTGATA TATGTAACAG AAACAAATGG 50427 .......... .......... .......... .......... .......... .......... 562 TATATATATG AACATTGTAT TAATTCTATA TGAACATTTT ATGAATGACA GTAAAGTTCA 50367 .......... .......... .......... .......... .......... .......... 562 ATGTATATAT ATAATGTATA AACATTGTAT GAATTATGAA TCTCATATCG AACTTGGATA 50307 .......... .......... .......... .......... .......... .......... 562 TATGTAACAG AAACAAATGG TACATAAATG AACATTGTAT GAATATTGTA TGAACATTGT 50247 .......... .......... .......... .......... .......... .......... 562 ATTAATACTA TATGAACATT TTATGAATGA CAGTATAGTT CAATGTATAT TTATAATGTA 50187 .......... .......... .......... .......... .......... .......... 562 TGAACATTGT ATGAATTATG AATATCATAT TGAACTTTGA CATATGTAAC AGAAACAAAT 50127 .......... .......... .......... .......... .......... .......... 562 GATATATATA TGATATTTTT TTACGAAACC AAATTTTATA AATATCAATG ATAACAACTG 50067 .......... .......... .......... .......... .......... .......... 562 CACTCAATAA AATAAAACGT GTTTCTAACA TTCAAAACAA CACAATAACA AATGTAACAT 50007 .......... .......... .......... .......... .......... .......... 562 TACGAAATCA TTGTTTTTGC ACAGGATAAT TTAAATATGT CTTTCTATTG TGTCCAACTT 49947 .......... .......... .......... .......... .......... .......... 562 GACGACATCT ACTACAAGTC ATTTTTGTCC TTTTGAATTT CACGTCAGCA AACCCCATCC 49887 .......... .......... .......... .......... .......... .......... 562 ATCTTTCAAG TTTTGGTATA TCCGCTGTAC AAAATTAATA AAAAACATAT ATTCTAATTT 49827 .......... .......... .......... .......... .......... .......... 562 CGTTTGAAAC ATATACTGTA ATTTTGAAAA AAAAATGAAC TTTCATACAC AAATGATACA 49767 .......... .......... .......... .......... .......... .......... 562 CGTTTTGTAT AATCTTCATA CACTAATAAA AAAAATTCAG ACTTCAATGT TACACAAATT 49707 .......... .......... .......... .......... .......... .......... 562 TATAATTAGT TCATATAACC CATACACACT TTATACACAG TTAACATATC ATTCACATTC 49647 .......... .......... .......... .......... .......... .......... 562 CTATACAATA CTCAAATTAA ACAAACACAA TACATTTTCA ATACAAAGTT AATATAAAAA 49587 .......... .......... .......... .......... .......... .......... 562 CATATATTAT AATTTAAATA GAAACATATA TTGTACGTCA AAATTTATCA GGTTACTAAA 49527 | | .......... .......... .......... .......... .......... ......TCGA 566 AAATGAAGTG AAATATGCA 49508 | |||||| | | ||| || ATATGAAGAG ACATACTCA 585 hqPGS_C08HBa0027D09.1-_SGN-E578078+ (56242 56092) ******************************************************************************** EST sequence 207 +strand 526 n (File: SGN-E204434+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATG Predicted gene structure (within gDNA segment 57227 to 55402): Exon 1 56627 56102 ( 526 n); cDNA 1 526 ( 526 n); score: 0.947 MATCH C08HBa0027D09.1- SGN-E204434+ 0.947 526 1.000 C PGS_C08HBa0027D09.1-_SGN-E204434+ (56627 56102) Alignment (genomic DNA sequence = upper lines): GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 56568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 60 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAT 56508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 120 TCCATCCTTA GAAACCACGT GTCCCAAGAA GGACACTGCA TCTAGCCAAA ACTCACACTT 56448 |||||||||| |||||||||| |||||||| ||||||| || |||||||||| |||||||||| TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 180 AGAGAACTTG GCATAAAGCT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 56388 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 240 TTCATGTTCC TTCTTGCTCT TTGAGTATAC CAATATATCA TCAATAAATA CGATCACGAA 56328 |||||||||| | ||| || | | ||||||| || ||||||| |||||||||| ||||||| || TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 300 GAGGTCCAAA TATGGCTTAA AAATCCCATT CATCAAGCTC ATGAACGCAG CAGGGGCATT 56268 ||| |||||| |||||||||| ||||||| || || || ||| || ||||||| |||||||||| GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 360 CGTAAGACCA AAAGACATCA CTACAAATTC GTAATTCCCA TACCTCGTTT GAAAAGCAGT 56208 | |||||||| |||||||||| ||||||||| ||||| |||| ||||| ||| ||||||||| CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 420 CTTGGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 56148 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 480 AGAGAAGACA CAAGCACCTT GTAACTGATC GAACAAATCA TCAATG 56102 ||| |||||| |||||||||| |||||||||| |||||| ||| | |||| AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATG 526 hqPGS_C08HBa0027D09.1-_SGN-E204434+ (56627 56102) ******************************************************************************** EST sequence 319 +strand 358 n (File: SGN-E240817+) 1 GTCTCACCCA TTTCTTCACT GTCTCAATCT TACCAGGATC CACCATCACT CCATCCTTAG 61 AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 121 CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 181 TCTTACTATT AGAGGATATC AGTATATCAT CAATGAACAT GATGACGCAG AGATCCAAAT 241 ATGGCTTAAA ATCCCGTTCA TCAAGCTCAT GAACGCAGCA GGGGCATTCG TAAGACCAAA 301 AGACATCACT ACAAATTCGT AATGCCCATA CCTGGTTCTA AAAGCAGTCT TTGGCACA Predicted gene structure (within gDNA segment 57255 to 55273): Exon 1 56556 56198 ( 359 n); cDNA 1 358 ( 358 n); score: 0.919 MATCH C08HBa0027D09.1- SGN-E240817+ 0.919 359 1.003 C PGS_C08HBa0027D09.1-_SGN-E240817+ (56556 56198) Alignment (genomic DNA sequence = upper lines): GTCTTACCCA ATTCTTCACT GTCTCAATCT TAGAAGGATC CACCATCATT CCATCCTTAG 56497 |||| ||||| ||||||||| |||||||||| || |||||| |||||||| | |||||||||| GTCTCACCCA TTTCTTCACT GTCTCAATCT TACCAGGATC CACCATCACT CCATCCTTAG 60 AAACCACGTG TCCCAAGAAG GACACTGCAT CTAGCCAAAA CTCACACTTA GAGAACTTGG 56437 |||||||||| ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 120 CATAAAGCTT TTTCTCCCTC AACATTTCCA ATACCATTCT CAAATGCTCT TCATGTTCCT 56377 |||||||||| |||||||||| |||||||| | |||| ||||| ||||||||| |||||||||| CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 180 TCTTGCTCTT TGAGTATACC AATATATCAT CAATAAATAC GATCACGAAG AGGTCCAAAT 56317 |||| || || ||| ||| | | |||||||| |||| || | ||| ||| || || ||||||| TCTTACTATT AGAGGATATC AGTATATCAT CAATGAACAT GATGACGCAG AGATCCAAAT 240 ATGGCTTAAA AATCCCATTC ATCAAGCTCA TGAACGCAGC AGGGGCATTC GTAAGACCAA 56257 ||||||| || |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTT-AA AATCCCGTTC ATCAAGCTCA TGAACGCAGC AGGGGCATTC GTAAGACCAA 299 AAGACATCAC TACAAATTCG TAATTCCCAT ACCTCGTTTG AAAAGCAGTC TTGGGCACA 56198 |||||||||| |||||||||| |||| ||||| |||| ||| |||||||||| || |||||| AAGACATCAC TACAAATTCG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC TTTGGCACA 358 hqPGS_C08HBa0027D09.1-_SGN-E240817+ (56556 56198) ******************************************************************************** EST sequence 258 -strand 542 n (File: SGN-E353207-) 1 AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAATAA GGGAAGGAGT ATGTGTACCC 61 CGCGTCGATG ATTTGATTCA CACTATTCTT ATATAGGCTC ATAGTTCGAA GTACTCTATA 121 CATCCTGGTG CAAACAAGAT GTATCGTGAC CTAAAGCAAC ATTTTTGGTG GAGTAGGATG 181 AAGCGTGACA TTGTTAATTT TGTTGCTCAA TGCCCGAATT GTCAGCAAGT AAAGTATGAA 241 CACCAGAGGC CTGGAGGGAC ACTTCAGAGA ATGCCCATTC CTGAATGGAA GTGGGAGAGA 301 ATTGCAATGG ACTTCGTGGT TAGTCATCCA AAGACGATGG GTAGGTATGA CTCTATTTGG 361 GTGATTGTTG ACAGATTAAC TAAGTCTGCT CACTCTATTT CGGTTAAGGT GACTTACAAT 421 GCAGAGAAGT TAGCCAAACT TTACATCTTA GAAATTGTTC GATTGCACGG AGTTCCACTC 481 TCCATCATAT CAGATAGAGG TACGCAATTT ACTTCTAAGT TTTGGAAAAC AGTACATGCC 541 GA Predicted gene structure (within gDNA segment 56644 to 60834): Exon 1 57344 57885 ( 542 n); cDNA 1 542 ( 542 n); score: 0.877 MATCH C08HBa0027D09.1+ SGN-E353207- 0.877 542 1.000 C PGS_C08HBa0027D09.1+_SGN-E353207- (57344 57885) Alignment (genomic DNA sequence = upper lines): AAGGAAGCAC AAATCGATGA GGAAGGTGTT TTGAGAATCA AGGGAAGG-G TATGTGTACC 57402 || |||||| |||||||||| |||||||||| |||||||| | |||||||| | |||||||||| AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAAT-A AGGGAAGGAG TATGTGTACC 59 CCGCGTCGAT GATTTGATCA ACACTATTCT GACTGAGGCT CATAGTTCAA GGTATTCGAT 57462 |||||||||| |||||||| |||||||||| | ||||| |||||||| | ||| || || CCGCGTCGAT GATTTGATTC ACACTATTCT TATATAGGCT CATAGTTCGA AGTACTCTAT 119 ACATCCGGGT GCAACCAAGA TGTATCGTGA CCTAAAACAA CACTTTTGGT GGAGTAGAAT 57522 |||||| ||| |||| ||||| |||||||||| |||||| ||| || ||||||| ||||||| || ACATCCTGGT GCAAACAAGA TGTATCGTGA CCTAAAGCAA CATTTTTGGT GGAGTAGGAT 179 GAAGCGTGAC ATTGTGGATT TTATTGCCAA ATGTCCAAAC TGTCAACAAG TAAAGTATGA 57582 |||||||||| ||||| ||| || |||| | ||| || || ||||| |||| |||||||||| GAAGCGTGAC ATTGTTAATT TTGTTGCTCA ATGCCCGAAT TGTCAGCAAG TAAAGTATGA 239 ACACCAAAGG CCCGGAGGAA CACTTCAGAG AATGCCCATT CCGGAATGGA AGTGGGAAAG 57642 |||||| ||| || ||||| | |||||||||| |||||||||| || ||||||| ||||||| || ACACCAGAGG CCTGGAGGGA CACTTCAGAG AATGCCCATT CCTGAATGGA AGTGGGAGAG 299 AATTGCAATG AACTTTGTGG TTGGTCTTCC GAAGACAATG GGTAAGTATG ACTCCATTTG 57702 |||||||||| |||| |||| || ||| ||| ||||| ||| |||| ||||| |||| ||||| AATTGCAATG GACTTCGTGG TTAGTCATCC AAAGACGATG GGTAGGTATG ACTCTATTTG 359 GGTGATTGTT GATAGGTTAA CTAAATCTGC TCATTTCATT CCGGTCAAGG TGACTTACAA 57762 |||||||||| || || |||| |||| ||||| ||| | ||| |||| |||| |||||||||| GGTGATTGTT GACAGATTAA CTAAGTCTGC TCACTCTATT TCGGTTAAGG TGACTTACAA 419 TGCAGAAAAG TTAGCCCAAC TTTACATCTC GGAAGTGGTG CGATTGCATG GGGCTCCACT 57822 |||||| ||| |||||| ||| ||||||||| ||| | || |||||||| | | | |||||| TGCAGAGAAG TTAGCCAAAC TTTACATCTT AGAAATTGTT CGATTGCACG GAGTTCCACT 479 ATCCATCATA TCAGATAGAG GTACGCAGTT TACTTCTATG TTTTGGAAAA CATTGCATGC 57882 ||||||||| |||||||||| ||||||| || |||||||| | |||||||||| || | ||||| CTCCATCATA TCAGATAGAG GTACGCAATT TACTTCTAAG TTTTGGAAAA CAGTACATGC 539 AGA 57885 || CGA 542 hqPGS_C08HBa0027D09.1+_SGN-E353207- (57344 57885) ******************************************************************************** EST sequence 162 -strand 188 n (File: SGN-E577888-) 1 ACTAGTTCTC CCGATGGTCA GTCTGAGCGA ACGATTCAAG TGTTGGAGAA TATGCTTCGT 61 GCGTGTGTGA TAGAGTTTGG TGGTCATTGG GATAGCTTCC TACCCTTAGC GGAGTTTTCA 121 TACAATAATA GCTATCAATC AAGCATTGAT ATGGCTCCAT TTGAAGCATT GTATGGTAGG 181 AGATGTAG Predicted gene structure (within gDNA segment 57040 to 58707): Exon 1 57931 58107 ( 177 n); cDNA 12 188 ( 177 n); score: 0.949 MATCH C08HBa0027D09.1+ SGN-E577888- 0.949 177 0.941 C PGS_C08HBa0027D09.1+_SGN-E577888- (57931 58107) Alignment (genomic DNA sequence = upper lines): CGATGGTAAG TCTGAAAGGA CGATTCAAGT GTTGGAGGAT ATGTTTCGTG CGTGTGTGAT 57990 ||||||| || ||||| | | |||||||||| ||||||| || ||| |||||| |||||||||| CGATGGTCAG TCTGAGCGAA CGATTCAAGT GTTGGAGAAT ATGCTTCGTG CGTGTGTGAT 71 AGAGTTTGGT GGTCATTGGG ATAGCTTCCT ACCCTTAGCG GAGTTTTCAT ACAATAATAG 58050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTTTGGT GGTCATTGGG ATAGCTTCCT ACCCTTAGCG GAGTTTTCAT ACAATAATAG 131 CTATCACTCA AGTATTGATA TGGCTCCATT CGAAGCATTG TATGGTAGGA GATGTAG 58107 |||||| ||| || ||||||| |||||||||| ||||||||| |||||||||| ||||||| CTATCAATCA AGCATTGATA TGGCTCCATT TGAAGCATTG TATGGTAGGA GATGTAG 188 hqPGS_C08HBa0027D09.1+_SGN-E577888- (57931 58107) ******************************************************************************** EST sequence 154 -strand 660 n (File: SGN-E349296-) 1 AATATTATCA ATACATATTA TTCGCTATTA AGAGCTTACT ACGAATATCG TAAGAGAAAC 61 CATAACCTAC CTCCACCGAA GATTCGTGAT CAAGCAAGTG ATTTCCCAAG CTTTGTGTTT 121 TTTCCTCTCG TTCGATCCTC TTTCTCGTTC GACTTTCTCT CTCTTTCTCT TGTTCTTTCT 181 ATTTTCTTTA TTCAAACCCT CTTTCTTTTA CCCTAATTAG TATATAATTA AGAATAAAAT 241 ATGGCAATAA TAACCCACTA ATTAACTTAA GGTTACCTCT TTTAACCCCC AAGTAATTAG 301 ACTTATTAAC ATTAACCCAC TAACTTTATA ATTAAAGCAG GAATAGTCAA AAACGTCCCT 361 TAAAACAATT GAGGAATTCC GACTCAGACT GGGATTTACG CAGCCTGTGA CAGCCCGTTG 421 TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC GCAAGGTTCA GAGACTGGAT TTTCACTGAA 481 GACTCTGTGA TGGTCCATCA CGCCTGTGAC GGTCCGTCTT GCCATTCCGT TACGAAGTTC 541 AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTCCTAAG TGTTTTGAAA TGAGACCCTG 601 CGACGGTCCG TCGTGCCCAT GATGGTCCGT CGTGGGGTCC GTCATTTCTG CCAGTTTTTC Predicted gene structure (within gDNA segment 60662 to 57869): Exon 1 60061 60039 ( 23 n); cDNA 113 134 ( 22 n); score: 0.739 Intron 1 60038 59336 ( 703 n); Pd: 0.827 (s: 0), Pa: 0.000 (s: 0.77) Exon 2 59335 58811 ( 525 n); cDNA 135 660 ( 526 n); score: 0.885 MATCH C08HBa0027D09.1- SGN-E349296- 0.885 548 0.830 C PGS_C08HBa0027D09.1-_SGN-E349296- (60061 60039,59335 58811) Alignment (genomic DNA sequence = upper lines): TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCGCT CCCTCATATT CATTATTCCT 60002 || | ||| | | |||| || ||| TTGTGTTTTT TCCTCTCGT- TCG....... .......... .......... .......... 134 CTTGTGTCGG TTCGTGACAC CTCGATCCCC TAATTCTACG TGTCGGTTCG TGACACCCGA 59942 .......... .......... .......... .......... .......... .......... 134 TCCCCTAATT CTACGTGTCG ATTCGTGACA CCCGATCCCC TAATTCTACG TGTCGGTTCG 59882 .......... .......... .......... .......... .......... .......... 134 TGACACCCGA TCCCCTAAAT CTACGTGTCG GTTCGTGACA CCCGATCTCC TAATTCTACG 59822 .......... .......... .......... .......... .......... .......... 134 TGTCGGTTCG TGACACCCGA TCTCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC 59762 .......... .......... .......... .......... .......... .......... 134 TAATTCTACG TGTCGGTTCG TGACACCCGA TCCACTAATA TCATTCTGTA AATCATCAAG 59702 .......... .......... .......... .......... .......... .......... 134 CCTTCTCTAT ACCAAGGCAT CCTCAATCCC ATTACTTTAA TTCATCAAGC CTTCTTCTAT 59642 .......... .......... .......... .......... .......... .......... 134 ACCAAGGCAT CATCAATCCC ATTACTTTAA TTCATCAAGC CTTCTTCTAT ACCAAGGCAT 59582 .......... .......... .......... .......... .......... .......... 134 CATCATTAAT AATGTATATT AAAGTTTCTT TTCAAGATTT GGGATTCAAT ATTTTCATCA 59522 .......... .......... .......... .......... .......... .......... 134 TGCTTATCTT ATCACAATCA CATAGTCATA TTCATGCAAG CATACAATTA AGCATATAGC 59462 .......... .......... .......... .......... .......... .......... 134 AGGGTTTACA ATATTATCAA TACATATCAT TCTCTATTAA GAGTTTACTA CGAATATCGT 59402 .......... .......... .......... .......... .......... .......... 134 AAGAGAAACC ATAACCTACC TCCACCGAAG AATTGAATCA AGCAAGAATT TTCCCAAAAG 59342 .......... .......... .......... .......... .......... .......... 134 CTTTGTTTCT CCCTTCTCGT TCGA--TTCT CTCTCTCTCT CCTGTTCTTT CTATTTTCTT 59284 || | ||||||| |||| |||| |||||| ||| | |||||||| |||||||||| ......ATCC TCTTTCTCGT TCGACTTTCT CTCTCTTTCT CTTGTTCTTT CTATTTTCTT 188 TATTCAAACC CTCTTTCTTT TACCCTAATT AGTATATAAT TAAGAATAAA AGATGGCAAT 59224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TATTCAAACC CTCTTTCTTT TACCCTAATT AGTATATAAT TAAGAATAAA ATATGGCAAT 248 AATACCCCAC TAATTAACTT AGGGTTACCT CTTTTAACCC CTCAAG-AAT TTTAGTTATT 59165 |||| ||||| |||||||||| | |||||||| |||||||||| | |||| ||| | | ||||| AATAACCCAC TAATTAACTT AAGGTTACCT CTTTTAACCC C-CAAGTAAT TAGACTTATT 307 AATATAAACC CACGAAATCT ATAATTAAGG AAAGAATAGT CCAAAAACGT CCCTTAAAAC 59105 || || |||| ||| || | | |||||||| | | ||||||| ||||||||| |||||||||| AACATTAACC CACTAACTTT ATAATTAAAG CAGGAATAGT -CAAAAACGT CCCTTAAAAC 366 TTCACCAGAA ATCCGACTCT GCCTGGGATT TGCGCAACCT GTGACGGGCC GTCGTGCCTG 59045 ||| |||||||| | |||||||| | |||| ||| ||||| | || || ||||||| AATTGAGGAA TTCCGACTCA GACTGGGATT TACGCAGCCT GTGACAGCCC GTTGTGCCTG 426 CGACGGTCCG TCCTGCATGT CGTCGCAAAG TTCAGAGAAT GGATTTTCAC TGAAGTCTCC 58985 |||||||||| ||||||| || |||||||| | |||||||| | |||||||||| ||||| ||| CGACGGTCCG TCCTGCAGGT CGTCGCAAGG TTCAGAGACT GGATTTTCAC TGAAGACTCT 486 GTGACGGTCC GTCACGCCTG TGACGGTCCG TCCTGCCATT CCGTCACGAA GTTCAGAGAG 58925 |||| ||||| ||||||||| |||||||||| || ||||||| |||| ||||| |||||||||| GTGATGGTCC ATCACGCCTG TGACGGTCCG TCTTGCCATT CCGTTACGAA GTTCAGAGAG 546 TCGATTTTCA GTACCCAATT TCAGATTTTC TAAGTGTTTT GAAACGAGAC CCTGCGACGG 58865 |||||||||| |||||||||| |||||||| | |||||||||| |||| ||||| |||||||||| TCGATTTTCA GTACCCAATT TCAGATTTCC TAAGTGTTTT GAAATGAGAC CCTGCGACGG 606 TCCGTCGTGC CCATGACGTT CCATCGTGGG GTCCGTCGCT TCTGCCAGTT TTTC 58811 |||||||||| |||||| | | || ||||||| ||||||| | |||||||||| |||| TCCGTCGTGC CCATGATGGT CCGTCGTGGG GTCCGTCATT TCTGCCAGTT TTTC 660 hqPGS_C08HBa0027D09.1-_SGN-E349296- (60061 60039,59335 58811) ******************************************************************************** EST sequence 152 -strand 725 n (File: SGN-E546548-) 1 GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 61 TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCCATCAAG 121 CCTTCTTTTA CACTAAGGCA TCATCATTCT CATTATATAA TTTATCAAGC CTTCTTTCAT 181 ACTAAGGCAT CATCATTCTC ATTATATAAT ATATCAAGCG AATTAGGGTT CTTTCAAGAT 241 TTGGGATTCA ATTGCTTCAT CATGCTTTGT TAATTCATCG CAATTTCATA ATCATAATCA 301 TGCAAGCATA CAACTTAAGC ACATAGCAGG GTTTACAATA CTATCAACAC ATAATATTCA 361 CTATTAAGAG TTCACTACGA ATATCGTAAC ATAAACCATA ACCTACCTCC ACCGAAGAAT 421 TGAATCAACA AGCTATCTTC TCAAAATCCT TGCTATCCTC TTCGTTTCTC TCTCTCTACT 481 CGTTCGTTTC TCCTCTCTTT CTGTTCTTTT CTTTTGTTTT GTTTTATTCA AACCCTCCTT 541 CTTTTTACCC TAATTAAAAG TATAATTAAG TGTAAAGGAG GACAATAAAA CCCACTAATT 601 AACTTAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACC TATTAATATT AACCCTCAAT 661 CTTTATAATT AAGGAAAGAA TAGTCCAAAA CGACCCCTAA AACGTGTAGA GGAATCCTAT 721 TTTGC Predicted gene structure (within gDNA segment 63070 to 57593): Exon 1 60044 59966 ( 79 n); cDNA 39 114 ( 76 n); score: 0.810 Intron 1 59965 59708 ( 258 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.77) Exon 2 59707 59601 ( 107 n); cDNA 115 220 ( 106 n); score: 0.799 Intron 2 59600 59565 ( 36 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.77) Exon 3 59564 59083 ( 482 n); cDNA 221 725 ( 505 n); score: 0.707 MATCH C08HBa0027D09.1- SGN-E546548- 0.734 668 0.921 C PGS_C08HBa0027D09.1-_SGN-E546548- (60044 59966,59707 59601,59564 59083) Alignment (genomic DNA sequence = upper lines): GTGTCGGTAC GTGACACTCC GCTCCCTCAT ATTCATTATT CCTCTTGTGT CGGTTCGTGA 59985 ||||||| || |||||||||| | | |||||| ||||||| | | || || ||| |||| GTGTCGGAAC GTGACACTCC GAT-CCTCAT ATTCATTCTA TC-CTGGTAC CGGAACGTGG 96 CACCTCGATC CCCTAATTCT ACGTGTCGGT TCGTGACACC CGATCCCCTA ATTCTACGTG 59925 |||| ||||| ||||||| | CACC-CGATC CCCTAATCC. .......... .......... .......... .......... 114 TCGATTCGTG ACACCCGATC CCCTAATTCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 59865 .......... .......... .......... .......... .......... .......... 114 AATCTACGTG TCGGTTCGTG ACACCCGATC TCCTAATTCT ACGTGTCGGT TCGTGACACC 59805 .......... .......... .......... .......... .......... .......... 114 CGATCTCCTA ATTCTACGTG TCGGTTCGTG ACACCCGATC CCCTAATTCT ACGTGTCGGT 59745 .......... .......... .......... .......... .......... .......... 114 TCGTGACACC CGATCCACTA ATATCATTCT GTAAATCATC AAGCCTTC-T CTATACCAAG 59686 ||| |||||||| | || || ||| .......... .......... .......... .......ATC AAGCCTTCTT TTACACTAAG 137 GCATCCTCAA TCCCATTACT TTAATTCATC AAGCCTTCTT CTATACCAAG GCATCATCAA 59626 ||||| ||| || ||||| | ||||| ||| |||||||||| |||| ||| ||||||||| GCATCATCAT TCTCATTA-T ATAATTTATC AAGCCTTCTT TCATACTAAG GCATCATCAT 196 TCCCATTACT TTAATTCATC AAGCCTTCTT CTATACCAAG GCATCATCAT TAATAATGTA 59566 || ||||| | |||| ||| |||| TCTCATTA-T ATAATATATC AAGCG..... .......... .......... .......... 220 TATTAAAGTT TCTTTTCAAG ATTTGGGATT CAATATTTTC ATCATGC-TT A-T-CTT-AT 59510 | | | | | || ||||||| |||||||||| |||| ||| ||||||| || | || || .AATTAGGGT TC-TTTCAAG ATTTGGGATT CAATTGCTTC ATCATGCTTT GTTAATTCAT 278 CACAATCACA TAGTCATATT CATGCAAGCA TACAA-TTAA GCATATAGCA GGGTTTACAA 59451 | |||| || || ||||| | |||||||||| ||||| |||| ||| |||||| |||||||||| CGCAATTTCA TAATCATAAT CATGCAAGCA TACAACTTAA GCACATAGCA GGGTTTACAA 338 TATTATCAAT ACATATCATT CTCTATTAAG AGTTTACTAC GAATATCGTA AGAGAAACCA 59391 || |||||| ||||| ||| | |||||||| |||| ||||| |||||||||| | | |||||| TACTATCAAC ACATAATATT CACTATTAAG AGTTCACTAC GAATATCGTA ACATAAACCA 398 TAACCTACCT CCACCGAAGA ATTGAATCAA GCAAG-AATT TTCCCAAAA- ----G----- 59342 |||||||||| |||||||||| |||||||||| |||| || ||| ||||| | TAACCTACCT CCACCGAAGA ATTGAATCAA -CAAGCTATC TTCTCAAAAT CCTTGCTATC 457 CT-TT-GTTT CTC-C-CT-T -CTCGTTCGA TTCT-CTCTC --TCTCTCCT GTTCTTTCTA 59291 || || |||| ||| | || | |||||||| |||| ||||| ||| | || |||||| CTCTTCGTTT CTCTCTCTCT ACTCGTTCGT TTCTCCTCTC TTTCTGTTCT TTTCTTTTGT 517 TTTTCTTTAT TCAAACCCTC TTTC-TTTTA CCCTAATTAG TA-TATAATT AAGAATAAAA 59233 ||| ||||| |||||||||| ||| ||||| ||||||||| | ||||||| ||| |||| TTTGTTTTAT TCAAACCCTC CTTCTTTTTA CCCTAATTAA AAGTATAATT AAGTGTAAAG 577 GATGGCAATA ATACCCCACT AATTAACTTA GGGTTACCTC TTTTAACCCC TCAAG-AATT 59174 || | ||||| | | |||||| |||||||||| ||||||||| |||||||||| |||| |||| GAGGACAATA A-AACCCACT AATTAACTTA AGGTTACCTC TTTTAACCCC -CAAGTAATT 635 TTAGTTATTA ATATAAACCC ACGAAATCTA TAATTAAGGA AAGAATAGTC CAAAAACGTC 59114 | ||||| |||| ||||| | | | || |||||||||| |||||||||| | |||||| | AGACCTATTA ATATTAACCC TCAATCTTTA TAATTAAGGA AAGAATAGTC C-AAAACGAC 694 CCTTAAAACT TCACCAGAAA TCCGACTCTG C 59083 || |||||| | || || ||| | | || | CCCTAAAACG TGTAGAGGAA TCCTATTTTG C 725 hqPGS_C08HBa0027D09.1-_SGN-E546548- (60044 59966,59707 59601,59564 59083) ******************************************************************************** EST sequence 90 -strand 763 n (File: SGN-E354383-) 1 AGAGAGTCGA TTTTCATATC CAAATTCAGA AATTCTAAGT ATGCTGAAAC GATGCACCTT 61 CGACGGGCCG TCGTGCCTGT GACGGTCCGT CGCAGTGCCC GTGGTCTTGG CCAGTTTTTC 121 CAGAATTAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAATAGA TACCAATTTA 181 CCCATCGTTC GTCCCCGAAC GATCAAATGA AGAAAAACAA TGGCGAAAAG GAGTACCTGA 241 ATCTGTAAAC AGATGTGGGT ATTTTTCTTG CATATCTGCC TCCTTCTCCC AAGTAGCTTC 301 TTCAACCGGT CGATTCTTCC ATTGAACTTT GATGGATGCA ATTTCTCTCG ACCTCAACTT 361 GCGAACCTCT CTATCTAAAA TAGCAACTGG TTCCTCCTCA TAAGTCCAAT TCTCACCAAG 421 CGAAACTGAA TCCCAACGGA TGATGTAGTT TCCATCTCCA TGGTATCTTT TCAACATGGA 481 TACATGAAAT ACCGGATGTA CTCCGGACAG CCCTGGAGGT AAGGCTAATT CATAAGCCAC 541 CTCCCCTACT CGCTTTAGTA CCTCAAATGG TCCAATATAC CTTGGACTTA ACTTACCTCT 601 TTTACGAAAC CGCATCACCC CTTTCATTGG CGAGACTTTC AACAAGACTT GTTCGCCCTC 661 CATGAACTCT AAGTCTCTAA CCTTTCGATC TGCATATTCT TTTTGTCTAC TTTGCGCCGC 721 TAGAAGCTTT TCTTGAATAG ACTTCACTTT CTCCATCGAA TCT Predicted gene structure (within gDNA segment 60521 to 57451): Exon 1 58930 58169 ( 762 n); cDNA 1 762 ( 762 n); score: 0.894 MATCH C08HBa0027D09.1- SGN-E354383- 0.894 762 0.999 C PGS_C08HBa0027D09.1-_SGN-E354383- (58930 58169) Alignment (genomic DNA sequence = upper lines): AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTTCTAAG TGTTTTGAAA CGA-GACCCT 58872 |||||||||| |||||| || |||| ||||| | ||||||| | | ||||| ||| | ||| AGAGAGTCGA TTTTCA-TAT CCAAATTCAG AAATTCTAAG TATGCTGAAA CGATGCACCT 59 GCGACGGTCC GTCGTGCCCA TGACGTTCCA TCGTGGGGTC CGTCGCTTCT GCCAGTTTTT 58812 |||||| || |||||||| ||||| ||| ||| | | | ||| | | |||||||||| TCGACGGGCC GTCGTGCCTG TGACGGTCCG TCGCAGTGCC CGTGGTCTTG GCCAGTTTTT 119 CCAGAATTGA AGTCTGTTGC TCAAAACGAC TAAACGGGTC GTTACATTAG ATACCAATTT 58752 |||||||| | | |||| ||| |||||||||| ||||| |||| |||||| ||| |||||||||| CCAGAATTAA AATCTGCTGC TCAAAACGAC TAAACAGGTC GTTACAATAG ATACCAATTT 179 ACCCATCGTT CGTCCCCGAA CGATCAAAAG AAGGAAAACA AGGGCTAAAA GGAGTACCTG 58692 |||||||||| |||||||||| |||||||| | ||| |||||| | ||| |||| |||||||||| ACCCATCGTT CGTCCCCGAA CGATCAAATG AAGAAAAACA ATGGCGAAAA GGAGTACCTG 239 AATCTGTAAT CAGATGTGGG TATTTTTCTC GCATATTCGC CTCCTTCTCC CAAGTGGCTT 58632 ||||||||| |||||||||| ||||||||| |||||| || |||||||||| ||||| |||| AATCTGTAAA CAGATGTGGG TATTTTTCTT GCATATCTGC CTCCTTCTCC CAAGTAGCTT 299 CTTCAACCGG TCGATTCTTC CATTGCACCT TGATGGATGC AATCTCTCTT GACCTCAACT 58572 |||||||||| |||||||||| ||||| || | |||||||||| ||| ||||| |||||||||| CTTCAACCGG TCGATTCTTC CATTGAACTT TGATGGATGC AATTTCTCTC GACCTCAACT 359 TGCGAACTTC TCTATCTAAA ATAGCAACAG GCTTCTCCTC ATAAGACAAG TTCTCATCAA 58512 ||||||| || |||||||||| |||||||| | | | |||||| ||||| | | |||||| ||| TGCGAACCTC TCTATCTAAA ATAGCAACTG GTTCCTCCTC ATAAGTCCAA TTCTCACCAA 419 GCAAAACTGA ATCCCAACGG ATAATGTAGT TTCCATCCCC GTGGCATCTT TTCAACATCG 58452 || ||||||| |||||||||| || ||||||| ||||||| || ||| ||||| |||||||| | GCGAAACTGA ATCCCAACGG ATGATGTAGT TTCCATCTCC ATGGTATCTT TTCAACATGG 479 ACACATGGAA TACCGGATGT ACTACGGACA GCCCTGGGGG CAAGGCTAAC TCATAAGCCA 58392 | ||||| || |||||||||| ||| |||||| ||||||| || |||||||| |||||||||| ATACATGAAA TACCGGATGT ACTCCGGACA GCCCTGGAGG TAAGGCTAAT TCATAAGCCA 539 CCTCCCCTAC TCGCTTGAGT ACTTCAAATT GTCCAATGTA CCTTGGACTT AGTTTACCCC 58332 |||||||||| |||||| ||| || |||||| ||||||| || |||||||||| | ||||| | CCTCCCCTAC TCGCTTTAGT ACCTCAAATG GTCCAATATA CCTTGGACTT AACTTACCTC 599 TTTTTCCAAA CCGCATCACC TCTTTCATGG GCGAAACTTT CAACAAGACT TGTTCACCTT 58272 |||| | ||| |||||||||| ||||||| | |||| ||||| |||||||||| ||||| || | TTTTACGAAA CCGCATCACC CCTTTCATTG GCGAGACTTT CAACAAGACT TGTTCGCCCT 659 CCATGAACTC TAAGTCTCTA ACCTTTCGAT CTGCATATTC TTTTTGTCTA CTTTGCGCCG 58212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGAACTC TAAGTCTCTA ACCTTTCGAT CTGCATATTC TTTTTGTCTA CTTTGCGCCG 719 CTAGAAGCTT TTCTTGAATA GACTTCACTT TTTCCATCGA ATC 58169 |||||||||| |||||||||| |||||||||| | |||||||| ||| CTAGAAGCTT TTCTTGAATA GACTTCACTT TCTCCATCGA ATC 762 hqPGS_C08HBa0027D09.1-_SGN-E354383- (58930 58169) ******************************************************************************** EST sequence 291 +strand 548 n (File: SGN-E356257+) 1 AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 61 AATGACAGGA CGGACCATCA CAGGCGTGAC GGACCGTCAT AGATTGTTCA GTGGAAATTG 121 ACTCTCTGAC CCTTGCGACG ACCTGCAGGA CGGACCGTCA CAGTCACGAC GGCCCGTCAC 181 AGGTTGCGCA AATCCCAGGC AGAATCGGAT TTCCTTACAC GTTTTAAGGG ACGTTTTTGG 241 ACTATTCTTT CCTTAATTAT AGATTTCGTG GGTTTATATT AATAACTCAA ATTCTTGGGG 301 TTAAAAGAGG TAACCCTAAG TTAATTAGTG GGGTATTATT GCCATCTTTT ATTCTTAATT 361 ATATGTTAAT TTGGGGTAAA AGAAAGAGGG TTTTGAAACG AGACCCTGCG ATGGTCCGTC 421 GTGCCCATGA CGGTCCGTCG TGGGGTCCGT CGCTTCTGCC AGTTTTTCCA GAAATAAAGT 481 CTGCTGCTCA AAACGACTAA ACGGGTCGTT ACATTATTTG ACTCTATCAC TTTAATTTTC 541 TAGTTAAC Predicted gene structure (within gDNA segment 63979 to 57833): Exon 1 62955 62938 ( 18 n); cDNA 320 337 ( 18 n); score: 0.667 Intron 1 62937 62168 ( 770 n); Pd: 0.000 (s: 0), Pa: 0.980 (s: 0) Exon 2 62167 62156 ( 12 n); cDNA 338 349 ( 12 n); score: 0.750 Intron 2 62155 61723 ( 433 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 61722 61686 ( 37 n); cDNA 350 386 ( 37 n); score: 0.622 Intron 3 61685 58893 (2793 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 4 58892 58763 ( 130 n); cDNA 387 516 ( 130 n); score: 0.946 MATCH C08HBa0027D09.1- SGN-E356257+ 0.946 197 0.359 C PGS_C08HBa0027D09.1-_SGN-E356257+ (62955 62938,62167 62156,61722 61686,58892 58763) Alignment (genomic DNA sequence = upper lines): GTGAATTAAG TGGTTACTGC AAACTGTATA CCAAAAGTCA GGAGATTGAA GATAGTAATA 62896 || ||||| || || | GTTAATTAGT GGGGTATT.. .......... .......... .......... .......... 337 ACTTTAGTAC TGTGTTGATA AATCTAAAAA ATGATGTCCT GGAACGGCAA CCCATTGCGA 62836 .......... .......... .......... .......... .......... .......... 337 TCAGCACCTC TTATTGGTTT ATGTATGTGT TCAATCAACA TCATACCTTT CCTCCCTTCT 62776 .......... .......... .......... .......... .......... .......... 337 ATTCACGGTT CAAATGTGTC CTAGTTCCCC TATTATTAGG AACCACCAAG TTAAAGTACT 62716 .......... .......... .......... .......... .......... .......... 337 TGGATCACAT AATTGAACCC TATTATCAAA ATCCCAACTT ATTTGGGACT GAGGTGTTGT 62656 .......... .......... .......... .......... .......... .......... 337 AGTTGTTGTG CATAATTGAA GTTATGCTTG TATTACTAAT TTCAGGCACC AGATGACTAG 62596 .......... .......... .......... .......... .......... .......... 337 TTGTTTTTTT TTTCTCCATT TAAAAAATTG GATGTATGGA GGGGATTCAA TGACTAGTTT 62536 .......... .......... .......... .......... .......... .......... 337 GAAGAGGTTG GATGTCAGGG TTCTTCTCGT TTGCTCTTTA AATTGATGAT GTTTCTCTTT 62476 .......... .......... .......... .......... .......... .......... 337 TCAATGCACA ATTGACTGAA TTAGTATGTC GTACCTGTTT CTCTTTTACA TCCCGTGGTA 62416 .......... .......... .......... .......... .......... .......... 337 TCATTAATTG ATATAACTGG GGATACTGAT GATTTGTTTA GAAAACCCAG TCTGAGTTAG 62356 .......... .......... .......... .......... .......... .......... 337 TAGGCACTGC TAAATCATTC TACTATTGCA CTTCATGTGC GACTCATGAC TCCTCATATT 62296 .......... .......... .......... .......... .......... .......... 337 GGTATCTCCG AACTCTACAA TTAAATAGAT GATATGTGGC TTGCTTGTTG ATGTGGTTAC 62236 .......... .......... .......... .......... .......... .......... 337 ATACAATTGC TAAGTGTTGT ACCTTTGATG ACACAAAGAA CATTGTTATC GTTATACTCT 62176 .......... .......... .......... .......... .......... .......... 337 TGATGCAGAA TGCCATGATT AGCAGCATTG TGCATGTAAC AAATCTGCCT CGGAGAAGAG 62116 | |||||| || ........AT TGCCATCTTT .......... .......... .......... .......... 349 TTCTAAAATG GTTTGAAGAA AGACGGTCTG AAGAAGGGGT TCCTGCTCAT CGACTTCCAT 62056 .......... .......... .......... .......... .......... .......... 349 ACCAACCATC CTCTATATCT GAATAGTACT TTCCTTGTAA ATACCAGCTA AAAGAAGTAG 61996 .......... .......... .......... .......... .......... .......... 349 TTTCTACATG TGGAACTGGG ATACCAGAAT TATTTGATAC GGTCACAGCT TCCTTTGGCT 61936 .......... .......... .......... .......... .......... .......... 349 ATTCGTCTTA CTGAAGCTAT AACAATAGCA ATATCCTCTG TAAGGAAAAG ACGGTGATCA 61876 .......... .......... .......... .......... .......... .......... 349 ACAAAAAGAA ATGAACATCT TTACAGCTTT TGTCTGTTCC TATCTTCTTT AGCTCCATTG 61816 .......... .......... .......... .......... .......... .......... 349 AGTCTAACTA TGTATACATT TTTTCTTACA TTCCAGCATA CTTCGTTAAT AAAAGGGATA 61756 .......... .......... .......... .......... .......... .......... 349 TTGTAATAAT ATAATTAAAC ATGGTGACCT AAGTATTTTG AATTTCAATG TAATAGGCAG 61696 |||| | |||| | |||| | | .......... .......... .......... ...TATTCTT AATTATATGT TAATTTGGGG 376 TAAAAATAAA GCTAAAAATA TAAAATAAAA TTGTAATAGC CAGTAATATA GATAGACGAT 61636 ||||| || TAAAAGAAAG .......... .......... .......... .......... .......... 386 AGTAATGTAT TTCATGTATT AATCTTCTAT TTCATAATAA CTGTATCCTA ATTTAATTAT 61576 .......... .......... .......... .......... .......... .......... 386 TTAGTTTATA AAATGAAAAG AATTTTATTA TATATTTCTT TTTCTAATTT AGTATTAATA 61516 .......... .......... .......... .......... .......... .......... 386 ACTATATAAA ATTTATAATT AAATTTAAAT ATTTATAACA TTATAAAAAA GAATGATAAA 61456 .......... .......... .......... .......... .......... .......... 386 ATAATAAATA AAATATACAT GTTCTGATTT CTATCTAGTA ATATATATAA AATATTTTCT 61396 .......... .......... .......... .......... .......... .......... 386 CTTATTATAT AAGAGGGAGT GTGCACAAAT TGCAAGTGCC TCCCCGTCAA CATGTCCGCT 61336 .......... .......... .......... .......... .......... .......... 386 TGGCATAGGG ATCATTTGGG TATTTTGTAA TTATTTTGCG AGAAATCTAT TGTACTTTGT 61276 .......... .......... .......... .......... .......... .......... 386 GCTATTGATC ATTTACTTCT CTCTTTTTTC TTTCATCATT GCTTAATGAA TTGGAGGATT 61216 .......... .......... .......... .......... .......... .......... 386 TGAAGTAATT CACATTTATG TTAGCAGTAA GTCGAAAAAT TAATATCCAC ACATATTTAA 61156 .......... .......... .......... .......... .......... .......... 386 GAGGATAAAT ATCAAGTTGT AATTATACTC ATTAAAAATA AATGACTTAT AGCATATTAT 61096 .......... .......... .......... .......... .......... .......... 386 TATCATCTTA CAGTACATCA ATAAATAATA TATTAATTAA AAATATTTAA AAATAAACTA 61036 .......... .......... .......... .......... .......... .......... 386 TTTATAGCAT ATTATTATCA AATTATAGCA TATTAACTAA CAATATATTA ATAAAAAATT 60976 .......... .......... .......... .......... .......... .......... 386 TATATTATTA TTTAAGTACT AATTATTATG TTTAAATAAT CAGTTTCATT TATTCACTTA 60916 .......... .......... .......... .......... .......... .......... 386 CCTTTTATCA ACAAAACCTT TTAAATTATT ACTGATTAAT CAATTACCTT TTAAAGTTTT 60856 .......... .......... .......... .......... .......... .......... 386 TAATATAAAT AATAAATTAT TAAATATTAA TCAATGACCT TTTAAAGTTT TTAATATAAA 60796 .......... .......... .......... .......... .......... .......... 386 TAATAAATTA TTAAATATTA ATCATTTACC TTTTAATATA TTTAATATCA ATAATAAATT 60736 .......... .......... .......... .......... .......... .......... 386 TGTCACGACC CAAATCCGGG CCGCGACTGG CACCCACACT TACGCTCCTA TGTGAGCGAA 60676 .......... .......... .......... .......... .......... .......... 386 CCAACCAATC TAAACCTTAA CATTTCAAGG TAATATCAAC ATAAAGTAAT GCGGAAGACT 60616 .......... .......... .......... .......... .......... .......... 386 TAAACTCATT AATAAAATCA ATAACTATTA TTATTCAACA TCTATTATTC CCCAAAATCT 60556 .......... .......... .......... .......... .......... .......... 386 GGAAGTCATC ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG 60496 .......... .......... .......... .......... .......... .......... 386 CTAAAAATAC ATAAGAAGCT AGTCCATGCC GGGAGTTCAA GGCATCAAGA CATGAAGGAG 60436 .......... .......... .......... .......... .......... .......... 386 AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACCCTGAAG ATCCGGTGTG ACGAAGACTG 60376 .......... .......... .......... .......... .......... .......... 386 GCTAGAATTA CCGTTGAGTT GAGGACGACG GCACGTTTGT TGCACTCCAC AAATAACAAG 60316 .......... .......... .......... .......... .......... .......... 386 AAGAAAAACA TAAAAGTAGG GGTCAGTACA AAACACGGGT ACTGAGTAGA TATCATCGGC 60256 .......... .......... .......... .......... .......... .......... 386 CAACTCAAAA TAGAAAACAG TATATACCAA GTAATATCAT AAACTCAACT ATGATACTCA 60196 .......... .......... .......... .......... .......... .......... 386 ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC GTCAAGTTCA CTCATGAGGA 60136 .......... .......... .......... .......... .......... .......... 386 CTCAAGCCCC AATACCATAC TCATTTGGGA ATCATGTTCA TTAGATTGAG TATATTAACA 60076 .......... .......... .......... .......... .......... .......... 386 TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGTCGGTA CGTGACACTC CGCTCCCTCA 60016 .......... .......... .......... .......... .......... .......... 386 TATTCATTAT TCCTCTTGTG TCGGTTCGTG ACACCTCGAT CCCCTAATTC TACGTGTCGG 59956 .......... .......... .......... .......... .......... .......... 386 TTCGTGACAC CCGATCCCCT AATTCTACGT GTCGATTCGT GACACCCGAT CCCCTAATTC 59896 .......... .......... .......... .......... .......... .......... 386 TACGTGTCGG TTCGTGACAC CCGATCCCCT AAATCTACGT GTCGGTTCGT GACACCCGAT 59836 .......... .......... .......... .......... .......... .......... 386 CTCCTAATTC TACGTGTCGG TTCGTGACAC CCGATCTCCT AATTCTACGT GTCGGTTCGT 59776 .......... .......... .......... .......... .......... .......... 386 GACACCCGAT CCCCTAATTC TACGTGTCGG TTCGTGACAC CCGATCCACT AATATCATTC 59716 .......... .......... .......... .......... .......... .......... 386 TGTAAATCAT CAAGCCTTCT CTATACCAAG GCATCCTCAA TCCCATTACT TTAATTCATC 59656 .......... .......... .......... .......... .......... .......... 386 AAGCCTTCTT CTATACCAAG GCATCATCAA TCCCATTACT TTAATTCATC AAGCCTTCTT 59596 .......... .......... .......... .......... .......... .......... 386 CTATACCAAG GCATCATCAT TAATAATGTA TATTAAAGTT TCTTTTCAAG ATTTGGGATT 59536 .......... .......... .......... .......... .......... .......... 386 CAATATTTTC ATCATGCTTA TCTTATCACA ATCACATAGT CATATTCATG CAAGCATACA 59476 .......... .......... .......... .......... .......... .......... 386 ATTAAGCATA TAGCAGGGTT TACAATATTA TCAATACATA TCATTCTCTA TTAAGAGTTT 59416 .......... .......... .......... .......... .......... .......... 386 ACTACGAATA TCGTAAGAGA AACCATAACC TACCTCCACC GAAGAATTGA ATCAAGCAAG 59356 .......... .......... .......... .......... .......... .......... 386 AATTTTCCCA AAAGCTTTGT TTCTCCCTTC TCGTTCGATT CTCTCTCTCT CTCCTGTTCT 59296 .......... .......... .......... .......... .......... .......... 386 TTCTATTTTC TTTATTCAAA CCCTCTTTCT TTTACCCTAA TTAGTATATA ATTAAGAATA 59236 .......... .......... .......... .......... .......... .......... 386 AAAGATGGCA ATAATACCCC ACTAATTAAC TTAGGGTTAC CTCTTTTAAC CCCTCAAGAA 59176 .......... .......... .......... .......... .......... .......... 386 TTTTAGTTAT TAATATAAAC CCACGAAATC TATAATTAAG GAAAGAATAG TCCAAAAACG 59116 .......... .......... .......... .......... .......... .......... 386 TCCCTTAAAA CTTCACCAGA AATCCGACTC TGCCTGGGAT TTGCGCAACC TGTGACGGGC 59056 .......... .......... .......... .......... .......... .......... 386 CGTCGTGCCT GCGACGGTCC GTCCTGCATG TCGTCGCAAA GTTCAGAGAA TGGATTTTCA 58996 .......... .......... .......... .......... .......... .......... 386 CTGAAGTCTC CGTGACGGTC CGTCACGCCT GTGACGGTCC GTCCTGCCAT TCCGTCACGA 58936 .......... .......... .......... .......... .......... .......... 386 AGTTCAGAGA GTCGATTTTC AGTACCCAAT TTCAGATTTT CTAAGTGTTT TGAAACGAGA 58876 || |||| |||||||||| .......... .......... .......... .......... ...AGGGTTT TGAAACGAGA 403 CCCTGCGACG GTCCGTCGTG CCCATGACGT TCCATCGTGG GGTCCGTCGC TTCTGCCAGT 58816 |||||||| | |||||||||| ||||||||| ||| |||||| |||||||||| |||||||||| CCCTGCGATG GTCCGTCGTG CCCATGACGG TCCGTCGTGG GGTCCGTCGC TTCTGCCAGT 463 TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA CGACTAAACG GGTCGTTACA TTA 58763 |||||||||| | ||||||| ||||||||| |||||||||| |||||||||| ||| TTTTCCAGAA ATAAAGTCTG CTGCTCAAAA CGACTAAACG GGTCGTTACA TTA 516 hqPGS_C08HBa0027D09.1-_SGN-E356257+ (58892 58763) ******************************************************************************** EST sequence 1 -strand 605 n (File: SGN-E347579-) 1 ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 61 GTGACACCTG ATCCCCTAAT CTACGTGCCG GTTCGTGACA CCCGATCCCC TAATTCTACG 121 TGCCAGTTCG TGACACCCGA TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC 181 TGCATGTGTC GGTACGTGAC ACTCCGATCC ACTAATATCA TTCTGTAAAT CATCAGGCCT 241 TCTCTATACC AAGGCATCAT CAATCCCATT ACTTTTATTC ATCAAGCCTT CTTCTATACC 301 AAGGCATCAT CATTAATAAG AGATTAGATT TTTATCAAGA TTTGGGATTC AATAACTTCA 361 TCATGCTTAA TATAATCACA ATTATATAAT CACGTTCATG CATGCATACA ATTAAGCATA 421 TAGCAGGGTT TACAATACTA CCAATACATA TCATTCTCTA TTAAGAGTTT ACTATGAAAG 481 CATGAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTTTTCTCC 541 AAGCTTTGTT TCTCCCTTCT CGTTCGATTC TTCCTCTCTC TCTTGTTCTT TCTATTTTCT 601 TTATT Predicted gene structure (within gDNA segment 62375 to 55764): Exon 1 59942 59686 ( 257 n); cDNA 1 253 ( 253 n); score: 0.928 Intron 1 59685 59636 ( 50 n); Pd: 0.054 (s: 0.98), Pa: 0.000 (s: 0.98) Exon 2 59635 59280 ( 356 n); cDNA 254 605 ( 352 n); score: 0.868 MATCH C08HBa0027D09.1- SGN-E347579- 0.893 613 1.013 C PGS_C08HBa0027D09.1-_SGN-E347579- (59942 59686,59635 59280) Alignment (genomic DNA sequence = upper lines): ATCCCCTAAT TCTACGTGTC GATTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 59883 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 60 GTGACACCCG ATCCCCTAAA TCTACGTGTC GGTTCGTGAC ACCCGATCTC CTAATTCTAC 59823 |||||||| | |||||||| | |||||||| | |||||||||| |||||||| | |||||||||| GTGACACCTG ATCCCCTA-A TCTACGTGCC GGTTCGTGAC ACCCGATCCC CTAATTCTAC 119 GTGTCGGTTC GTGACACCCG ATCTCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC 59763 ||| | |||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GTGCCAGTTC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC 179 CTAATTCTAC GTGTCGGTTC GTGACAC-CC GATCCACTAA TATCATTCTG TAAATCATCA 59704 | | | | |||||||| | ||||||| || |||||||||| |||||||||| |||||||||| C---TGC-AT GTGTCGGTAC GTGACACTCC GATCCACTAA TATCATTCTG TAAATCATCA 235 AGCCTTCTCT ATACCAAGGC ATCCTCAATC CCATTACTTT AATTCATCAA GCCTTCTTCT 59644 ||||||||| |||||||| GGCCTTCTCT ATACCAAG.. .......... .......... .......... .......... 253 ATACCAAGGC ATCATCAATC CCATTACTTT AATTCATCAA GCCTTCTTCT ATACCAAGGC 59584 || |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ........GC ATCATCAATC CCATTACTTT TATTCATCAA GCCTTCTTCT ATACCAAGGC 305 ATCATCATTA ATAATGTATA TTAAAGTTTC TTTTCAAGAT TTGGGATTCA ATATTTTCAT 59524 |||||||||| |||| | | | ||| | ||| || ||||||| |||||||||| ||| ||||| ATCATCATTA ATAA-G-AGA TTAGA-TTT- TTATCAAGAT TTGGGATTCA ATAACTTCAT 361 CATGCTT-AT CTTATCACAA TCACATAGTC ATATTCATGC AAGCATACAA TTAAGCATAT 59465 ||||||| || | ||||||| | | ||| || | ||||||| | |||||||| |||||||||| CATGCTTAAT ATAATCACAA TTATATAATC ACGTTCATGC ATGCATACAA TTAAGCATAT 421 AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT TAAGAGTTTA CTACGAATAT 59405 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ||| ||| | AGCAGGGTTT ACAATACTAC CAATACATAT CATTCTCTAT TAAGAGTTTA CTATGAA-A- 479 CGTAAGAGAA ACCATAACCT ACCTCCACCG AAGAATTG-A ATCAAGCAAG --AATTTTCC 59348 | | || || |||||||||| |||||||||| |||| | | |||||||||| |||||| | -GCATGA-AA ACCATAACCT ACCTCCACCG AAGATTAGTG ATCAAGCAAG CAAATTTTTC 537 CAAAAGCTTT GTTTCTCCCT TCTCGTTCGA TTCTCTCTCT CTCTCCTGTT CTTTCTATTT 59288 ||||||| |||||||||| |||||||||| |||| |||| ||||| |||| |||||||||| TCCAAGCTTT GTTTCTCCCT TCTCGTTCGA TTCTTCCTCT CTCTCTTGTT CTTTCTATTT 597 TCTTTATT 59280 |||||||| TCTTTATT 605 hqPGS_C08HBa0027D09.1-_SGN-E347579- (59942 59686,59635 59280) ******************************************************************************** EST sequence 41 -strand 542 n (File: SGN-E252199-) 1 CGACCCAGCC TGGGATTACG CAGTCTGTGA CGGTCCGTCC TGCACGTCCG TCACAGAGTT 61 CAGAGACTAG ATTTTTACCA AGGGTCTGTG ACGGCCCATC ACGCCTGTGA CGGTCCGTCC 121 TGCCATTCCG TCACGAAGTT CAGAGAGTCG ATTTCAGTAC CCAAATTTCA GAATTCTAAG 181 TGTTTTGGAA CGAGACCCCC TCGACGGTCC GTCGTGGGAT CCGTCGTCTC AGTCAGTTTT 241 TCCAGAAATA AAATCTGTTA CTCAAAACGA CTAAACAGGT CGTTACAATA GATACCAATT 301 TACCCATCGT TCGTCCCCGA ACGATCACAA GAAGAAAAAC AAGGGCGAAA AGGAGTACCT 361 GAATCTGTAA ACAGGTATGG GTATCTTTCT CGCATATCAA CTTCCTTCTC CCAAGTGGAT 421 TCTTCAACTG GTCGATTCTT CCATTGAACT TTGATAGATG CAATCTCCCT TGACCTCAAT 481 TTGCGGACTT CTCTATCTAA AATGGCAACA GGCTCCTCCT CATAAGACAA ATTCTCATCA 541 AG Predicted gene structure (within gDNA segment 60563 to 57047): Exon 1 59047 58511 ( 537 n); cDNA 25 542 ( 518 n); score: 0.858 MATCH C08HBa0027D09.1- SGN-E252199- 0.858 537 0.991 C PGS_C08HBa0027D09.1-_SGN-E252199- (59047 58511) Alignment (genomic DNA sequence = upper lines): CTGCGACGGT CCGTCCTGCA TGT-CGTCGC AAAGTTCAGA GAATGGATTT TCACTGAAGT 58989 ||| |||||| |||||||||| || |||| | | |||||||| || | ||||| | || ||| CTGTGACGGT CCGTCCTGCA CGTCCGTCAC AGAGTTCAGA GACTAGATTT TTAC-CAAGG 83 CTCCGTGACG GTCCGTCACG CCTGTGACGG TCCGTCCTGC CATTCCGTCA CGAAGTTCAG 58929 || |||||| | || ||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGTGACG GCCCATCACG CCTGTGACGG TCCGTCCTGC CATTCCGTCA CGAAGTTCAG 143 AGAGTCGATT TTCAGTACCC -AATTTCAGA TTTTCTAAGT GTTTTGAAAC GAGACCCTGC 58870 |||||||| | |||||||||| ||||||||| |||||||| |||||| ||| ||||||| | AGAGTCGA-T TTCAGTACCC AAATTTCAGA -ATTCTAAGT GTTTTGGAAC GAGACCC--C 199 GACGGTCCGT CGTGCCCATG ACGTTCCATC GTGGGGTCCG TCGCTTCTGC CAGTTTTTCC 58810 | | || || | | || || ||||| |||| ||| || | |||||||||| --C--T-CGA CG-G----T- CCG-----TC GTGGGATCCG TCGTCTCAGT CAGTTTTTCC 243 AGAATTGAAG TCTGTTGCTC AAAACGACTA AACGGGTCGT TACATTAGAT ACCAATTTAC 58750 |||| | || |||||| ||| |||||||||| ||| |||||| |||| ||||| |||||||||| AGAAATAAAA TCTGTTACTC AAAACGACTA AACAGGTCGT TACAATAGAT ACCAATTTAC 303 CCATCGTTCG TCCCCGAACG ATCAAAAGAA GGAAAACAAG GGCTAAAAGG AGTACCTGAA 58690 |||||||||| |||||||||| |||| ||||| | |||||||| ||| |||||| |||||||||| CCATCGTTCG TCCCCGAACG ATCACAAGAA GAAAAACAAG GGCGAAAAGG AGTACCTGAA 363 TCTGTAATCA GATGTGGGTA TTTTTCTCGC ATATTCGCCT CCTTCTCCCA AGTGGCTTCT 58630 ||||||| || | | |||||| | |||||||| |||| | | |||||||||| ||||| |||| TCTGTAAACA GGTATGGGTA TCTTTCTCGC ATATCAACTT CCTTCTCCCA AGTGGATTCT 423 TCAACCGGTC GATTCTTCCA TTGCACCTTG ATGGATGCAA TCTCTCTTGA CCTCAACTTG 58570 ||||| |||| |||||||||| ||| || ||| || ||||||| |||| ||||| |||||| ||| TCAACTGGTC GATTCTTCCA TTGAACTTTG ATAGATGCAA TCTCCCTTGA CCTCAATTTG 483 CGAACTTCTC TATCTAAAAT AGCAACAGGC TTCTCCTCAT AAGACAAGTT CTCATCAAG 58511 || ||||||| |||||||||| ||||||||| | |||||||| ||||||| || ||||||||| CGGACTTCTC TATCTAAAAT GGCAACAGGC TCCTCCTCAT AAGACAAATT CTCATCAAG 542 hqPGS_C08HBa0027D09.1-_SGN-E252199- (59047 58511) ******************************************************************************** EST sequence 132 -strand 402 n (File: SGN-E357559-) 1 TGTGTTGGTT CGTGACACCT GATCCCTTAA TCTACGTGTC GGTTTGTGAC ACCCGATCCC 61 CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA 121 AGCCTTCTCC CTTACCAAGG CATCATCAAT CTCATTACTT TAGTTCATCA AGCCTTCTCC 181 CTTACCAAGG CATCATCATT AAAAAGAGAT TAGGTTTTTA CAAGATTTGG GATTCAATAA 241 CTTCATCATG CTTATATAAT AACAATTATA TAGTTACATT CATGCAAGCA TACAATTAAG 301 CACATAGCAG GGTTTACAAT ATTATCAATA CATATCATTC TCTATTAAGA GTTTACTACG 361 AATATCGTAA GAGAAACAAT AACCTACCTC CACCGAAGAC TA Predicted gene structure (within gDNA segment 60754 to 58741): Exon 1 59822 59715 ( 108 n); cDNA 2 108 ( 107 n); score: 0.917 Intron 1 59714 59667 ( 48 n); Pd: 0.814 (s: 0.94), Pa: 0.000 (s: 0.88) Exon 2 59666 59371 ( 296 n); cDNA 109 399 ( 291 n); score: 0.899 MATCH C08HBa0027D09.1- SGN-E357559- 0.903 404 1.005 C PGS_C08HBa0027D09.1-_SGN-E357559- (59822 59715,59666 59371) Alignment (genomic DNA sequence = upper lines): GTGTCGGTTC GTGACACCCG ATCTCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC 59763 |||| ||||| |||||||| | ||| ||| | |||||||||| |||| ||||| |||||||||| GTGTTGGTTC GTGACACCTG ATC-CCTTAA TCTACGTGTC GGTTTGTGAC ACCCGATCCC 60 CTAATTCTAC GTGTCGGTTC GTGACACCCG ATCCACTAAT ATCATTCTGT AAATCATCAA 59703 |||||||||| ||||| |||| |||||||||| |||| ||||| ||||||| CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCT.. .......... 108 GCCTTCTCTA TACCAAGGCA TCCTCAATCC CATTACTTTA ATTCATCAAG CCTTCTTCTA 59643 | | |||||||||| |||||| | .......... .......... .......... ......ATCA ATTCATCAAG CCTTCTCCCT 132 TACCAAGGCA TCATCAATCC CATTACTTTA ATTCATCAAG CCTTCTTCTA TACCAAGGCA 59583 |||||||||| ||||||||| |||||||||| ||||||||| |||||| | |||||||||| TACCAAGGCA TCATCAATCT CATTACTTTA GTTCATCAAG CCTTCTCCCT TACCAAGGCA 192 TCATCATTAA TAATGTATAT TAAAGTTTCT TTTCAAGATT TGGGATTCAA TATTTTCATC 59523 |||||||||| || | | || | || || | || ||||||| |||||||||| || |||||| TCATCATTAA -AAAG-AGAT T--AGGTT-T TTACAAGATT TGGGATTCAA TAACTTCATC 247 ATGCTTATCT TATCACAATC ACATAGTCAT ATTCATGCAA GCATACAATT AAGCATATAG 59463 |||||||| | || ||||| | ||||| | |||||||||| |||||||||| ||||| |||| ATGCTTATAT AATAACAATT ATATAGTTAC ATTCATGCAA GCATACAATT AAGCACATAG 307 CAGGGTTTAC AATATTATCA ATACATATCA TTCTCTATTA AGAGTTTACT ACGAATATCG 59403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGTTTAC AATATTATCA ATACATATCA TTCTCTATTA AGAGTTTACT ACGAATATCG 367 TAAGAGAAAC CATAACCTAC CTCCACCGAA GA 59371 |||||||||| ||||||||| |||||||||| || TAAGAGAAAC AATAACCTAC CTCCACCGAA GA 399 hqPGS_C08HBa0027D09.1-_SGN-E357559- (59822 59715,59666 59371) ******************************************************************************** EST sequence 4 -strand 774 n (File: SGN-E349977-) 1 AGTAGATATC ATCGCTAACT CAAAATAGGG AACAATATAT ATCAATAATA ATGTAAATCA 61 ACTACAATAC TCATCATGTA GCAATAGCAA TTTCTTNATC ATTAACAATT ACCGTCAAGT 121 TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 181 GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 241 ACTCCGCTCC TCTATTTCTA TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATATTCAT 301 TCTATCCTGG TACCGGAACG TGGCACCCGA TCCTCATATT CTATCCTGGT GTCGGAACGT 361 AACACTCCGA TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCTCAT 421 ATTCTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT ATTCTATCCT GGTGTCGGAA 481 CGTGACACTC CGATCCTCAT ATTCATTCTA TCCTGGTACC GAAACGTGGC ACCCGATCCC 541 CTAATTCATC AAGCCTTCTT CTACACTAAG GCATCATCAT TCTCATTATA TAATTTATCA 601 AGCCTTCTCT CATACTAAGG CCTCATCAAT CTTATTATAT AATATATCAA GTGAATTAGG 661 GTTCTTTCAA GATTTGGGAT TCAATAGCTT CATCATGCTT TGTTAATTCA TAACAATTTC 721 ATAATCATAA TCATGCAAGC ATACCAATAA GCATATAGAC AGGTTTACAA CATC Predicted gene structure (within gDNA segment 61751 to 54180): Exon 1 60271 59893 ( 379 n); cDNA 1 385 ( 385 n); score: 0.743 Intron 1 59892 59863 ( 30 n); Pd: 0.000 (s: 0.43), Pa: 0.000 (s: 0.41) ?? Exon 2 59862 59604 ( 259 n); cDNA 386 650 ( 265 n); score: 0.616 Intron 2 59603 59569 ( 35 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.84) Exon 3 59568 59448 ( 121 n); cDNA 651 773 ( 123 n); score: 0.744 MATCH C08HBa0027D09.1- SGN-E349977- 0.700 759 0.981 C PGS_C08HBa0027D09.1-_SGN-E349977- (60271 59893,59862 59604,59568 59448) Alignment (genomic DNA sequence = upper lines): AGTAGATATC ATCGGCCAAC TCAAAATAGA AAACAGTATA TACCAAGTAA TATCATAAAC 60212 |||||||||| ||| || ||| ||||||||| |||| |||| || ||| ||| || |||| AGTAGATATC ATC-GCTAAC TCAAAATAGG GAACAATATA TATCAA-TAA TAATGTAAA- 57 TCAACTATGA TACTCAACAT GTAGCAACAA CAAGCACTAT ATCATTAACA ATTACCGTCA 60152 ||||||| | |||||| ||| ||||||| | ||| || |||||||||| |||||||||| TCAACTACAA TACTCATCAT GTAGCAATAG CAATTTCTTN ATCATTAACA ATTACCGTCA 117 AGTTCACTCA TGAGGACTCA AGCCCCAATA CCATACTCAT TTGGGAATCA TGTTCATTAG 60092 ||||||| || |||||||||| |||| ||||| |||||||||| |||||||| | ||||||||| AGTTCACACA TGAGGACTCA AGCCTCAATA CCATACTCAT TTGGGAATTA AGTTCATTAG 177 ATTGAGTATA TT-AACATCT TTCAAGATTC ATTATCTTTA TTTCTCTTGT GTCGGTACGT 60033 |||||||||| || | |||| |||||||||| ||||||||| || ||||||| |||||||||| ATTGAGTATA TTCATTATCT TTCAAGATTC ATTATCTTTC TTCCTCTTGT GTCGGTACGT 237 GACACTCCGC TCCCTCATAT TCATTATTCC TCTTGTGTCG GTTCGTGACA CCTCGATCC- 59974 |||||||||| | |||| ||| | || | | || ||| || | |||| || | |||||| GACACTCCGC T-CCTC-TAT T-TCTA-T-C -CTGGTGCCG GAACGTGGCA CTCCGATCCT 291 CCTA---ATT CTA-CGT-GT --CGGTTCGT GACACCCGAT CCCCTAATTC TA--C--GTG 59925 | || ||| ||| | | || ||| ||| | |||||||| || | |||| || | ||| CATATTCATT CTATCCTGGT ACCGGAACGT GGCACCCGAT CCTCATATTC TATCCTGGTG 351 TCGATTCGTG ACAC-CCGAT CCCCTAATTC -TACGTGTCG GTTCGTGACA CCCGATCCCC 59867 ||| ||| |||| ||||| || | |||| | | TCGGAACGTA ACACTCCGAT CCTCATATTC ATTC...... .......... .......... 385 TAAATCTAC- -GTGTCGGTT CGTGACACCC GAT-CTCCTA AT-TCTAC-- GTGTCGGTTC 59813 | | | || ||| |||| ||||| ||| ||| || | | | | ||||||| | ....TATCCT GGTACCGGAA CGTGGCACCC GATCCTCATA TTCTATCCTG GTGTCGGAAC 441 GTGACAC-CC GAT-CTCCTA AT-TCTAC-- GTGTCGGTTC GTGACAC-CC GATCCCCTAA 59759 ||||||| || ||| ||| || | | | | ||||||| | ||||||| || ||||| | | GTGACACTCC GATCCTCATA TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA 501 TTCTACGTGT CGGTTCGTGA CACCCGATCC ACTAATATCA TTCTGTAAAT CATCAAGCCT 59699 ||| | | | | || || ||| | | | | | | ||| | |||||||||| TTC-A--T-T CTA-TCCTGG TACCGAAACG TGGCACCCGA TCCCCTAATT CATCAAGCCT 556 TC-TCTATAC CAAGGCATCC TCAATCCCAT TACTTTAATT CATCAAGCCT TCTTCTATAC 59640 || |||| || |||||||| ||| || ||| || | ||||| ||||||||| ||| |||| TCTTCTACAC TAAGGCATCA TCATTCTCAT TA-TATAATT TATCAAGCCT TCTCTCATAC 615 CAAGGCATCA TCAATCCCAT TACTTTAATT CATCAAGCCT TCTTCTATAC CAAGGCATCA 59580 ||||| ||| |||||| || || | |||| ||||| TAAGGCCTCA TCAATCTTAT TA-TATAATA TATCAA.... .......... .......... 650 TCATTAATAA TGTATATTAA AGTTTCTTTT CAAGATTTGG GATTCAATAT TTTCATCATG 59520 || ||| | | ||| ||| |||||||||| ||||||||| ||||||||| .......... .GTGAATT-A GGGTTC-TTT CAAGATTTGG GATTCAATAG CTTCATCATG 697 C-TT-AT-CT T-ATCACAAT CACATAGTCA TATTCATGCA AGCATACAAT TAAGCATATA 59464 | || | | | || ||||| |||| ||| || ||||||| ||||||| | |||||||||| CTTTGTTAAT TCATAACAAT TTCATAATCA TAATCATGCA AGCATACCAA TAAGCATATA 757 GCAGGGTTTA CAATAT 59448 | |||||| ||| || GACAGGTTTA CAACAT 773 hqPGS_C08HBa0027D09.1-_SGN-E349977- (60271 59893,59862 59604,59568 59448) ******************************************************************************** EST sequence 83 -strand 647 n (File: SGN-E396055-) 1 ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 61 TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 121 TTAAAGTAGG AATAGTCCAA AACGTCCCTT AAAACGTGTA AAGAAATCCG ACCCAGACTG 181 GGATTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC AGGTCGTCGC 241 AAGGTTCAGA GACTCAATTT CCACCAAAGA GTCTGTGACG GTCCGTCACG CCCGTGACGG 301 TCCGTCGTGC CATTCCGTTA CGAAGTTCAG AGAGTCGATT TTTAGTACCC AATTTCAGAA 361 TTTCTAAGTG TTTTGAAACG AGACTCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG 421 TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA 481 ACAGGTCGTT ACATTTATGT TCTTCCTACT TAAATATTAT TATTATTTTA CGATTTATAA 541 CACTATTAGA AACAAAGATT TTCTCAACCA TGAATTAATG AAAAAATTAT GCCATAAAAT 601 ATAAAAAATT TACTCATTTT TCATTGAGCT AATTCATAAA AAAAAAA Predicted gene structure (within gDNA segment 62739 to 55645): Exon 1 59256 58764 ( 493 n); cDNA 1 495 ( 495 n); score: 0.836 PPA cDNA 636 647 MATCH C08HBa0027D09.1- SGN-E396055- 0.836 493 0.762 C PGS_C08HBa0027D09.1-_SGN-E396055- (59256 58764) Alignment (genomic DNA sequence = upper lines): ATTAGTATAT AATTAAGAAT -AAAAGATGG CAATAATACC CCACTAATTA ACT-TAGGGT 59199 ||||| |||| |||||||||| ||||||||| ||||||| | ||||||||| ||| ||||| ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 60 TACCTCTTTT AACCCCTCAA G-AATTTTAG TTATTAATAT AAA-CCCACG AAATCTATAA 59141 | | | |||| |||||| | |||| | ||||||| || ||| ||||| || | ||||| TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 120 TTAAGGAAAG AATAGTCCAA AAACGTCCCT TAAAACTTCA CCAGAAATCC GACTCTGCCT 59081 |||| | | | |||||||| | |||||||||| |||||| | |||||||| ||| | | || TTAAAGTAGG AATAGTCC-A AAACGTCCCT TAAAACGTGT AAAGAAATCC GACCCAGACT 179 GGGATTTGCG CAACCTGTGA CGGGCCGTCG TGCCTGCGAC GGTCCGTCCT GCATGTCGTC 59021 |||| || || |||||||||| || |||||| |||||||||| |||||||||| ||| |||||| GGGA-TTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 238 GCAAAGTTCA GAGAATGGAT TTTCACTGAA GTCTCCGTGA CGGTCCGTCA CGCCTGTGAC 58961 |||| ||||| |||| | || || ||| || | || |||| |||||||||| |||| ||||| GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 298 GGTCCGTCCT GCCATTCCGT CACGAAGTTC AGAGAGTCGA TTTTCAGTAC CCAATTTCAG 58901 |||||||| | |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 358 ATTTTCTAAG TGTTTTGAAA CGAGACCCTG CGACGGTCCG TCGTGCCCAT GACGTTCCAT 58841 | |||||||| |||||||||| |||||| | ||||||||| |||||| ||| |||| ||| | AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 418 CGTGGGGTCC GTCGCTTCTG CCAGTTTTTC CAGAATTGAA GTCTGTTGCT CAAAACGACT 58781 |||||| ||| |||| || || ||||||| || || | || |||| | || |||||||||| CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 478 AAACGGGTCG TTACATT 58764 |||| ||||| ||||||| AAACAGGTCG TTACATT 495 hqPGS_C08HBa0027D09.1-_SGN-E396055- (59256 58764) ******************************************************************************** EST sequence 82 -strand 640 n (File: SGN-E398551-) 1 TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAA TAATTTACTC AAGGTTACCT 61 CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT 121 AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC 181 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 241 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 301 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 361 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 421 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 481 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 541 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 601 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA Predicted gene structure (within gDNA segment 62669 to 55645): Exon 1 59254 58764 ( 491 n); cDNA 1 488 ( 488 n); score: 0.855 PPA cDNA 629 640 MATCH C08HBa0027D09.1- SGN-E398551- 0.855 491 0.767 C PGS_C08HBa0027D09.1-_SGN-E398551- (59254 58764) Alignment (genomic DNA sequence = upper lines): TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 59195 ||| |||||| |||||||||| ||||||| || ||||| |||| ||||| ||| | ||||||| TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA ATAATTTACT CAAGGTTACC 59 TCTTTTAACC CCTCAAGAAT TTTAGTTATT AATATAAACC CACGAAATCT ATAATTAAGG 59135 |||||||||| || ||| | | ||||| || ||||||| ||| || | | |||||||| | TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTAAAG 119 AAAGAATAGT CCAAAAACGT CCCTTAAAAC TTCACCAGAA ATCCGACTCT GCCTGGGATT 59075 | ||||||| || ||||||| |||||||||| | |||| ||||||| | | |||||| | TAGGAATAGT CC-AAAACGT CCCTTAAAAC GTGTAAAGAA ATCCGACCCA GACTGGGA-T 177 TGCGCAACCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCATGT CGTCGCAAAG 59015 | |||||||| |||| || || |||||||||| |||||||||| ||||||| || |||||||| | TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT CGTCGCAAGG 237 TTCAGAGAAT GGATTTTCAC TGAAGTCTCC GTGACGGTCC GTCACGCCTG TGACGGTCCG 58955 |||||||| | |||| ||| ||| || |||||||||| |||||||| | |||||||||| TTCAGAGACT CAATTTCCAC CAAAGAGTCT GTGACGGTCC GTCACGCCCG TGACGGTCCG 297 TCCTGCCATT CCGTCACGAA GTTCAGAGAG TCGATTTTCA GTACCCAATT TCAGATTTTC 58895 || ||||||| |||| ||||| |||||||||| |||||||| | |||||||||| ||||| |||| TCGTGCCATT CCGTTACGAA GTTCAGAGAG TCGATTTTTA GTACCCAATT TCAGAATTTC 357 TAAGTGTTTT GAAACGAGAC CCTGCGACGG TCCGTCGTGC CCATGACGTT CCATCGTGGG 58835 |||||||||| |||||||||| | |||||| ||| |||||| ||||||| | || ||||||| TAAGTGTTTT GAAACGAGAC TCCTCGACGG TCCATCGTGC TCATGACGGT CCGTCGTGGG 417 GTCCGTCGCT TCTGCCAGTT TTTCCAGAAT TGAAGTCTGT TGCTCAAAAC GACTAAACGG 58775 ||||||| || || ||| |||||| || | || |||| | |||||||| |||||||| | TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC TACTCAAAAC GACTAAACAG 477 GTCGTTACAT T 58764 |||||||||| | GTCGTTACAT T 488 hqPGS_C08HBa0027D09.1-_SGN-E398551- (59254 58764) ******************************************************************************** EST sequence 81 -strand 630 n (File: SGN-E396038-) 1 TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC 61 CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT AGGAATAGTC 121 CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC GCAACCTGTG 181 ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC AGAGACTCAA 241 TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG TGCCATTCCG 301 TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA GTGTTTTGAA 361 ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC CGTCGTCTCA 421 ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC GTTACATTTA 481 TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT AGAAACAAAG 541 ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA ATTTACTCAT 601 TTTTCATAGA GTTAAATAAT AAAAAAAAAA Predicted gene structure (within gDNA segment 62569 to 55645): Exon 1 59244 58764 ( 481 n); cDNA 1 478 ( 478 n); score: 0.857 PPA cDNA 621 630 MATCH C08HBa0027D09.1- SGN-E396038- 0.857 481 0.763 C PGS_C08HBa0027D09.1-_SGN-E396038- (59244 58764) Alignment (genomic DNA sequence = upper lines): TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC TCTTTTAACC 59185 |||||||||| ||||||| || ||||| |||| |||||| ||| | ||||||| |||||||||| TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT CAAGGTTACC TCTTTTAACC 59 CCTCAAGAAT TTTAGTTATT AATATAAACC CACGAAATCT ATAATTAAGG AAAGAATAGT 59125 || ||| | | ||||| || ||||||| ||| || | | |||||||| | | ||||||| CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTAAAG TAGGAATAGT 119 CCAAAAACGT CCCTTAAAAC TTCACCAGAA ATCCGACTCT GCCTGGGATT TGCGCAACCT 59065 || ||||||| |||||||||| | |||| ||||||| | | |||||| | | |||||||| CC-AAAACGT CCCTTAAAAC GTGTAAAGAA ATCCGACCCA GACTGGGA-T TACGCAACCT 177 GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCATGT CGTCGCAAAG TTCAGAGAAT 59005 |||| || || |||||||||| |||||||||| ||||||| || |||||||| | |||||||| | GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT CGTCGCAAGG TTCAGAGACT 237 GGATTTTCAC TGAAGTCTCC GTGACGGTCC GTCACGCCTG TGACGGTCCG TCCTGCCATT 58945 |||| ||| ||| || |||||||||| |||||||| | |||||||||| || ||||||| CAATTTCCAC CAAAGAGTCT GTGACGGTCC GTCACGCCCG TGACGGTCCG TCGTGCCATT 297 CCGTCACGAA GTTCAGAGAG TCGATTTTCA GTACCCAATT TCAGATTTTC TAAGTGTTTT 58885 |||| ||||| |||||||||| |||||||| | |||||||||| ||||| |||| |||||||||| CCGTTACGAA GTTCAGAGAG TCGATTTTTA GTACCCAATT TCAGAATTTC TAAGTGTTTT 357 GAAACGAGAC CCTGCGACGG TCCGTCGTGC CCATGACGTT CCATCGTGGG GTCCGTCGCT 58825 |||||||||| | |||||| ||| |||||| ||||||| | || ||||||| ||||||| GAAACGAGAC TCCTCGACGG TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC 417 TCTGCCAGTT TTTCCAGAAT TGAAGTCTGT TGCTCAAAAC GACTAAACGG GTCGTTACAT 58765 || || ||| |||||| || | || |||| | |||||||| |||||||| | |||||||||| TCAACCTGTT TTTCCAAAAA TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACAT 477 T 58764 | T 478 hqPGS_C08HBa0027D09.1-_SGN-E396038- (59244 58764) ******************************************************************************** EST sequence 234 +strand 686 n (File: SGN-E241789+) 1 ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 61 CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 121 GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 181 AGTACAAACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 241 ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 301 ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 361 GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 421 TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA CGTGTCGGTT CGTGACACCC 481 GATCCCCTAA TACTACGTGT CGGTTCGTTA CACCCGATCT CCTAATACTA CGTGCCGATT 541 CGTGACACCC GATCCATTAA TACTATGTGT CGGTTCGTGA CACCCGATCC ATTAATACTA 601 CGTGTCGGTT CGTGACACCC GATCCCCTAA CCTCATTCTT TTAGTTCATC AAGCCTTCTT 661 TTATACCAAG ACATCATCAT TAACAA Predicted gene structure (within gDNA segment 62511 to 57618): Exon 1 60470 60027 ( 444 n); cDNA 1 443 ( 443 n); score: 0.802 Intron 1 60026 59911 ( 116 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.94) Exon 2 59910 59715 ( 196 n); cDNA 444 639 ( 196 n); score: 0.908 Intron 2 59714 59617 ( 98 n); Pd: 0.814 (s: 0.88), Pa: 0.000 (s: 0.91) Exon 3 59616 59570 ( 47 n); cDNA 640 686 ( 47 n); score: 0.915 MATCH C08HBa0027D09.1- SGN-E241789+ 0.834 687 1.001 C PGS_C08HBa0027D09.1-_SGN-E241789+ (60470 60027,59910 59715,59616 59570) Alignment (genomic DNA sequence = upper lines): ATGCCGGGAG TTCAAGG-CA TCAAGACATG AAGGAGA-AG -ATCCAGTCC AAGCTAGAAG 60414 ||| | | ||||||| || |||||||||| || |||| || ||||||||| |||||| | ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 60 CGTTAGCTCA CCCTGAAGAT CCGGTGTGAC GAAGACTGGC TAGAATTACC GTTGAGTTGA 60354 | ||||||| ||||||| || | | |||| ||||||||| |||| || | |||||||||| CAATAGCTCA CCCTGAA-AT CTGACGTGAT GAAGACTGGT TAGAGTTGCG GTTGAGTTGA 119 GGACGACGGC ACGTTTGTTG CACTCCACAA ATAACAAGAA GAAAAACATA AAAGTAGGGG 60294 |||||||| ||||||| || |||||||||| |||||| || | |||||||| |||||||||| AGACGACGGT ACGTTTGCTG CACTCCACAA TTAACAAAAA G-AAAACATA AAAGTAGGGG 178 TCAGTACAAA ACACGGGTAC TGAGTAGATA TCATCGGCCA ACTCAAAATA GAAAACAGTA 60234 ||||||| || ||||| |||| |||||||||| |||||||||| ||||| |||| || |||| || TCAGTAC-AA ACACGAGTAC TGAGTAGATA TCATCGGCCA ACTCAGAATA GAGAACAATA 237 TATACCAAGT AATATCATAA ACTCAACTAT GATACTCAAC ATGTAGCAAC AACAAGCACT 60174 |||| ||| | |||| |||| | ||||| || | ||| ||| | || |||| |||||| || TATATCAAAT AATAAAATAA AATCAACCAT AACACTTAAC AGGTGACAAC AACAAGTACC 297 AT-ATCATTA ACAATTACCG TCAAGTTCAC TCATGAGGAC TCAAGCCCCA ATACCATACT 60115 || | |||| | ||| |||| || |||||||| ||||||| | | |||||||| ATAACCATTG GGCACAACC- -CAAGAACAT CTATGAGGAC TCAAGCCTCC ACACCATACT 355 CATTTGGGAA TCATGTTCAT TAGATTGAGT ATATTAACAT CTTTCAAGAT TCATTATCTT 60055 |||||||||| || |||||| || ||||||| | |||||||| |||||||| ||||| | || CATTTGGGAA ACAGGTTCAT TAAATTGAGT ACATTAACAT AATTCAAGAT TCATTCTTTT 415 TATTTCTCTT GTGTCGGTAC GTGACACTCC GCTCCCTCAT ATTCATTATT CCTCTTGTGT 59995 || | | ||||||| || |||| ||| TACTATCGTG GTGTCGGAAC GTGATACT.. .......... .......... .......... 443 CGGTTCGTGA CACCTCGATC CCCTAATTCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 59935 .......... .......... .......... .......... .......... .......... 443 ATTCTACGTG TCGATTCGTG ACACCCGATC CCCTAATTCT ACGTGTCGGT TCGTGACACC 59875 |||||| ||||||| || |||||||||| |||||||||| .......... .......... ....CCGATC CCCTAATGCT ACGTGTCGGT TCGTGACACC 479 CGATCCCCTA AATCTACGTG TCGGTTCGTG ACACCCGATC TCCTAATTCT ACGTGTCGGT 59815 |||||||||| | ||||||| ||||||||| |||||||||| ||||||| || ||||| || | CGATCCCCTA ATACTACGTG TCGGTTCGTT ACACCCGATC TCCTAATACT ACGTGCCGAT 539 TCGTGACACC CGATCTCCTA ATTCTACGTG TCGGTTCGTG ACACCCGATC CCCTAATTCT 59755 |||||||||| ||||| || || ||| ||| |||||||||| |||||||||| | |||| || TCGTGACACC CGATCCATTA ATACTATGTG TCGGTTCGTG ACACCCGATC CATTAATACT 599 ACGTGTCGGT TCGTGACACC CGATCCACTA ATATCATTCT GTAAATCATC AAGCCTTCTC 59695 |||||||||| |||||||||| |||||| ||| | ||||||| ACGTGTCGGT TCGTGACACC CGATCCCCTA ACCTCATTCT .......... .......... 639 TATACCAAGG CATCCTCAAT CCCATTACTT TAATTCATCA AGCCTTCTTC TATACCAAGG 59635 .......... .......... .......... .......... .......... .......... 639 CATCATCAAT CCCATTACTT TAATTCATCA AGCCTTCTTC TATACCAAGG CATCATCATT 59575 || || ||||||| ||||||||| ||||||||| |||||||||| .......... ........TT TAGTTCATCA AGCCTTCTTT TATACCAAGA CATCATCATT 681 AATAA 59570 || || AACAA 686 hqPGS_C08HBa0027D09.1-_SGN-E241789+ (60470 60027,59910 59715,59616 59570) ******************************************************************************** EST sequence 28 -strand 681 n (File: SGN-E389553-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCGTTCC TACTTAAATA TTATTATTAT TTTACGATTT 601 ATAACACTAT TAGAAACAAA GATTTTCTCA ACCATGAATT AATGAAAAAA TTATGGAATA 661 AAATATAAAA AATTACTCAT T Predicted gene structure (within gDNA segment 60429 to 55335): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 MATCH C08HBa0027D09.1- SGN-E389553- 0.851 558 0.819 C PGS_C08HBa0027D09.1-_SGN-E389553- (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E389553- (59321 58764) ******************************************************************************** EST sequence 182 +strand 729 n (File: SGN-E550212+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAACTCG 721 GGGGGGGGC Predicted gene structure (within gDNA segment 60419 to 55445): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 699 716 MATCH C08HBa0027D09.1- SGN-E550212+ 0.851 558 0.765 C PGS_C08HBa0027D09.1-_SGN-E550212+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550212+ (59321 58764) ******************************************************************************** EST sequence 183 +strand 710 n (File: SGN-E550065+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATGA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTGATTCAT AAGAAAAAAA Predicted gene structure (within gDNA segment 60419 to 55635): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 MATCH C08HBa0027D09.1- SGN-E550065+ 0.851 558 0.786 C PGS_C08HBa0027D09.1-_SGN-E550065+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550065+ (59321 58764) ******************************************************************************** EST sequence 185 +strand 732 n (File: SGN-E550201+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCNA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAAACT 721 CGAGGGGGGG CC Predicted gene structure (within gDNA segment 60419 to 55415): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 699 718 MATCH C08HBa0027D09.1- SGN-E550201+ 0.851 558 0.762 C PGS_C08HBa0027D09.1-_SGN-E550201+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550201+ (59321 58764) ******************************************************************************** EST sequence 186 +strand 709 n (File: SGN-E550207+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTNCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 60419 to 55645): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 699 709 MATCH C08HBa0027D09.1- SGN-E550207+ 0.851 558 0.787 C PGS_C08HBa0027D09.1-_SGN-E550207+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550207+ (59321 58764) ******************************************************************************** EST sequence 187 +strand 715 n (File: SGN-E550335+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAATCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCNAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 60409 to 55575): Exon 1 59321 58764 ( 558 n); cDNA 2 557 ( 556 n); score: 0.849 PPA cDNA 698 715 MATCH C08HBa0027D09.1- SGN-E550335+ 0.849 558 0.780 C PGS_C08HBa0027D09.1-_SGN-E550335+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||| ||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTC-AAC CCTCCTTCTT 59 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 295 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAATC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 415 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 557 hqPGS_C08HBa0027D09.1-_SGN-E550335+ (59321 58764) ******************************************************************************** EST sequence 204 +strand 714 n (File: SGN-E390013+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACNAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 60419 to 55595): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 699 714 MATCH C08HBa0027D09.1- SGN-E390013+ 0.851 558 0.782 C PGS_C08HBa0027D09.1-_SGN-E390013+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E390013+ (59321 58764) ******************************************************************************** EST sequence 205 +strand 720 n (File: SGN-E389834+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTA CGTCGACTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAGAACGAC 541 TAAACAGGAC GTTACATTTA TGATCGTCCT ACTTAAATAT CATTATTATT TTACGATTTA 601 TAACACTATT AGAAACGAAG ATTTTCTCGA CCATGAATTA ATGAAAAAAT ATGCCATGAA 661 ATATAAAAAT TTACTCGTTC TTCATTGAGC TATTCGTGAA AAAAAAAAAA AAATCGAGGG Predicted gene structure (within gDNA segment 60419 to 55535): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.846 PPA cDNA 699 714 MATCH C08HBa0027D09.1- SGN-E389834+ 0.846 558 0.775 C PGS_C08HBa0027D09.1-_SGN-E389834+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | | ||||| || || || ||||||| || | || |||| | |||| || TCCGTCGTGG GTTACGTCGA CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAGAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| || ||||||| || CGACTAAACA GGACGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E389834+ (59321 58764) ******************************************************************************** EST sequence 209 +strand 717 n (File: SGN-E550484+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 60419 to 55565): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 699 717 MATCH C08HBa0027D09.1- SGN-E550484+ 0.851 558 0.778 C PGS_C08HBa0027D09.1-_SGN-E550484+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550484+ (59321 58764) ******************************************************************************** EST sequence 210 +strand 713 n (File: SGN-E550211+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 60409 to 55595): Exon 1 59321 58764 ( 558 n); cDNA 2 557 ( 556 n); score: 0.849 PPA cDNA 698 713 MATCH C08HBa0027D09.1- SGN-E550211+ 0.849 558 0.783 C PGS_C08HBa0027D09.1-_SGN-E550211+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||| ||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTC-AAC CCTCCTTCTT 59 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 295 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 415 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 557 hqPGS_C08HBa0027D09.1-_SGN-E550211+ (59321 58764) ******************************************************************************** EST sequence 211 +strand 713 n (File: SGN-E550464+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GNTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCTA CCATGAATTA ATGAAAAATT ATGCCATAAG 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 60419 to 55605): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.849 PPA cDNA 698 713 MATCH C08HBa0027D09.1- SGN-E550464+ 0.849 558 0.783 C PGS_C08HBa0027D09.1-_SGN-E550464+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| ||||| |||| || CGACTAAACA GGTCGNTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550464+ (59321 58764) ******************************************************************************** EST sequence 212 +strand 713 n (File: SGN-E549941+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA TATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCGA CCNATGATTA ATGAAAAATT ATGCCATCAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 60419 to 55605): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.849 PPA cDNA 699 713 MATCH C08HBa0027D09.1- SGN-E549941+ 0.849 558 0.783 C PGS_C08HBa0027D09.1-_SGN-E549941+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | | |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAATATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E549941+ (59321 58764) ******************************************************************************** EST sequence 213 +strand 714 n (File: SGN-E550025+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 60419 to 55595): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 699 714 MATCH C08HBa0027D09.1- SGN-E550025+ 0.851 558 0.782 C PGS_C08HBa0027D09.1-_SGN-E550025+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550025+ (59321 58764) ******************************************************************************** EST sequence 214 +strand 558 n (File: SGN-E231589+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA TAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTT Predicted gene structure (within gDNA segment 60409 to 57145): Exon 1 59321 58764 ( 558 n); cDNA 1 557 ( 557 n); score: 0.849 MATCH C08HBa0027D09.1- SGN-E231589+ 0.849 558 1.000 C PGS_C08HBa0027D09.1-_SGN-E231589+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C T-CTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | | ||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 295 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||| ||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCATAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 415 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 557 hqPGS_C08HBa0027D09.1-_SGN-E231589+ (59321 58764) ******************************************************************************** EST sequence 251 +strand 649 n (File: SGN-E374999+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CCAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTTCAC CCTGAATTAA TGAAAAAAT Predicted gene structure (within gDNA segment 60409 to 56235): Exon 1 59321 58764 ( 558 n); cDNA 1 557 ( 557 n); score: 0.849 MATCH C08HBa0027D09.1- SGN-E374999+ 0.849 558 0.860 C PGS_C08HBa0027D09.1-_SGN-E374999+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C T-CTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | | ||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 295 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 415 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||| ||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCCAAA 535 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 557 hqPGS_C08HBa0027D09.1-_SGN-E374999+ (59321 58764) ******************************************************************************** EST sequence 260 +strand 711 n (File: SGN-E396039+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AAAAACAAAG ATTTTCTCCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AAATAAAAAA AATTTACTCA TTTTTTCTTG GAGCTAATTC AAAAAAAAAA A Predicted gene structure (within gDNA segment 60419 to 55625): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 661 672 MATCH C08HBa0027D09.1- SGN-E396039+ 0.851 558 0.785 C PGS_C08HBa0027D09.1-_SGN-E396039+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E396039+ (59321 58764) ******************************************************************************** EST sequence 262 +strand 711 n (File: SGN-E396056+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAA ATTTTCTCAC CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATAATAAAA ATTTACTCAT TTTTTCTTTG AGCTAATTCA TAAAAAAAAA A Predicted gene structure (within gDNA segment 60419 to 55625): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.851 PPA cDNA 700 711 MATCH C08HBa0027D09.1- SGN-E396056+ 0.851 558 0.785 C PGS_C08HBa0027D09.1-_SGN-E396056+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E396056+ (59321 58764) ******************************************************************************** EST sequence 279 +strand 690 n (File: SGN-E377133+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG Predicted gene structure (within gDNA segment 60409 to 55825): Exon 1 59321 58764 ( 558 n); cDNA 1 557 ( 557 n); score: 0.851 MATCH C08HBa0027D09.1- SGN-E377133+ 0.851 558 0.809 C PGS_C08HBa0027D09.1-_SGN-E377133+ (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C T-CTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | | ||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 295 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 415 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 557 hqPGS_C08HBa0027D09.1-_SGN-E377133+ (59321 58764) ******************************************************************************** EST sequence 20 -strand 673 n (File: SGN-E550140-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTACTCN 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATGTTATCAA CCATGAATTA ACAAAAAATT AGACCAAAAA 661 TATAAAAAAT TAC Predicted gene structure (within gDNA segment 60429 to 56015): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.848 MATCH C08HBa0027D09.1- SGN-E550140- 0.848 558 0.829 C PGS_C08HBa0027D09.1-_SGN-E550140- (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| ||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTACTC 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | NAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTACA TT 58764 ||||||||| |||||||||| || CGACTAAACA GGTCGTTACA TT 558 hqPGS_C08HBa0027D09.1-_SGN-E550140- (59321 58764) ******************************************************************************** EST sequence 19 -strand 679 n (File: SGN-E550127-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTCCT TTTCTTTTTC TTATCAAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTGCACAA CCATGAATTA ATGAAAAAAT TATGACATAA 661 AATATAAAAA ATTACTCAT Predicted gene structure (within gDNA segment 60429 to 55955): Exon 1 59321 58764 ( 558 n); cDNA 2 558 ( 557 n); score: 0.845 MATCH C08HBa0027D09.1- SGN-E550127- 0.845 558 0.822 C PGS_C08HBa0027D09.1-_SGN-E550127- (59321 58764) Alignment (genomic DNA sequence = upper lines): TCGATTCTCT CTCTCTCTC- CTGT-TCTTT CTATTTTCTT TATTCAAACC CTCTTTCTTT 59264 ||||||||| |||||||| | | || || | |||| | ||| ||||| ||| |||||| TCGATTCTCC TTCTCTCTCT TTCTGTCCTT TTCTTTTTCT TATCAAAACC CTCCTTCTTT 61 TACCCTAATT AGTATATAAT TAAGAATAAA AGATGGCAAT AATACCCCAC TAATTAACTT 59204 |||||||||| || ||||||| |||||||||| |||||| ||| |||| ||||| ||||| ||| TACCCTAATT AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC 120 AGGGTTACCT CTTTTAACCC CTCAAG-AAT TTTAGTTATT AATATAAACC CACGAAATCT 59145 | |||||||| |||||||||| | || | ||| | | ||||| || ||||||| ||| || | | AAGGTTACCT CTTTTAACCC C-CAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAGG AAAGAATAGT CCAAAAACGT CCCTTAAAAC TTCACCAGAA ATCCGACTCT 59085 |||||||| | | ||||||| || ||||||| |||||||||| | |||| ||||||| | ATAATTAAAG TAGGAATAGT CC-AAAACGT CCCTTAAAAC GTGTAAAGAA ATCCGACCCA 238 GCCTGGGATT TGCGCAACCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCATGT 59025 | |||||| | | |||||||| |||| || || |||||||||| |||||||||| ||||||| || GACTGGGA-T TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CGTCGCAAAG TTCAGAGAAT GGATTTTCAC TGAAGTCTCC GTGACGGTCC GTCACGCCTG 58965 |||||||| | |||||||| | |||| ||| ||| || |||||||||| |||||||| | CGTCGCAAGG TTCAGAGACT CAATTTCCAC CAAAGAGTCT GTGACGGTCC GTCACGCCCG 357 TGACGGTCCG TCCTGCCATT CCGTCACGAA GTTCAGAGAG TCGATTTTCA GTACCCAATT 58905 |||||||||| || ||||||| |||| ||||| |||||||||| |||||||| | |||||||||| TGACGGTCCG TCGTGCCATT CCGTTACGAA GTTCAGAGAG TCGATTTTTA GTACCCAATT 417 TCAGATTTTC TAAGTGTTTT GAAACGAGAC CCTGCGACGG TCCGTCGTGC CCATGACGTT 58845 ||||| |||| |||||||||| |||||||||| | |||||| ||| |||||| ||||||| | TCAGAATTTC TAAGTGTTTT GAAACGAGAC TCCTCGACGG TCCATCGTGC TCATGACGGT 477 CCATCGTGGG GTCCGTCGCT TCTGCCAGTT TTTCCAGAAT TGAAGTCTGT TGCTCAAAAC 58785 || ||||||| ||||||| || || ||| |||||| || | || |||| | |||||||| CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC TACTCAAAAC 537 GACTAAACGG GTCGTTACAT T 58764 |||||||| | |||||||||| | GACTAAACAG GTCGTTACAT T 558 hqPGS_C08HBa0027D09.1-_SGN-E550127- (59321 58764) ******************************************************************************** EST sequence 184 +strand 726 n (File: SGN-E550322+) 1 TCGCACCAGA TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC 61 CTCCTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT 121 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 181 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 241 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 301 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 361 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 421 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 481 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 541 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 601 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 661 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA 721 AAAAAC Predicted gene structure (within gDNA segment 60509 to 55565): Exon 1 59314 58764 ( 551 n); cDNA 22 567 ( 546 n); score: 0.861 PPA cDNA 708 725 MATCH C08HBa0027D09.1- SGN-E550322+ 0.861 551 0.759 C PGS_C08HBa0027D09.1-_SGN-E550322+ (59314 58764) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTC TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT TTACCCTAAT 59255 ||||||||| | |||||||| | | |||| |||||||||| |||| ||||| |||||||||| TCTCTCTCT- TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT TTACCCTAAT 79 TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 59195 ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| | ||||||| TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT CAAGGTTACC 138 TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC TATAATTAAG 59136 |||||||||| || || | || || | |||| ||| |||||| |||| || | ||||||||| TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT TATAATTAAA 197 GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC TGCCTGGGAT 59076 | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | | |||||| GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC AGACTGGGA- 255 TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG TCGTCGCAAA 59016 || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | ||||||||| TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG TCGTCGCAAG 315 GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT GTGACGGTCC 58956 ||||||||| | |||| || | ||| || ||||||||| ||||||||| |||||||||| GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC GTGACGGTCC 375 GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT TTCAGATTTT 58896 ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||| ||| GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT TTCAGAATTT 435 CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT TCCATCGTGG 58836 |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| ||| |||||| CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG TCCGTCGTGG 495 GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA CGACTAAACG 58776 | ||||||| || || || ||||||| || | || |||| | ||||||| ||||||||| GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA CGACTAAACA 555 GGTCGTTACA TT 58764 |||||||||| || GGTCGTTACA TT 567 hqPGS_C08HBa0027D09.1-_SGN-E550322+ (59314 58764) ******************************************************************************** EST sequence 84 -strand 674 n (File: SGN-E396057-) 1 TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 61 GAATAATAAC CCACTAATTT ACTCAAGGTT ACCTCTTTTA ACCCCCAGGT AATTAGACTT 121 ATTAACATAA ACCCACTAAC TTTATAATTA AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA 181 ACGTGTAAAG AAATCCGACC CAGACTGGGA TTACGCAACC TGTGATGGCC CGTCGTGCCT 241 GCGACGGTCC GTCCTGCAGG TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC 301 TGTGACGGTC CGTCACGCCC GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA 361 GTCGATTTTT AGTACCCAAT TTCAGAATTT TTAAGTGTTT TGAAACGAGA CTCCTCGACG 421 GTCCATCGTG CTCATGACGG TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA 481 ATAAAATCTG CTACTCAAAA CGACTAAACA GGTCGTTACA TTTATGTTCT TCCTACTTAA 541 ATATTATTAT TATTTTACGA TTTATAACAC TATTAGAAAC AAAGATTTTC TCAACCATGA 601 ATTAATGAAA AAATTATGCC ATAAAATATA AAAAATTTAC TCATTTTTCA TTGAGCTAAT 661 TCATAAAAAA AAAA Predicted gene structure (within gDNA segment 63009 to 55645): Exon 1 59288 58764 ( 525 n); cDNA 1 522 ( 522 n); score: 0.860 PPA cDNA 663 674 MATCH C08HBa0027D09.1- SGN-E396057- 0.860 525 0.779 C PGS_C08HBa0027D09.1-_SGN-E396057- (59288 58764) Alignment (genomic DNA sequence = upper lines): TTCTTTATTC AAACCCTCTT TCTTTTACCC TAATTAGTAT ATAATTAAGA ATAAAAGATG 59229 || ||||||| ||||| |||| | |||||||| ||||||| || |||||||||| |||||||||| TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 60 GCAATAATAC CCCACTAATT AACTTAGGGT TACCTCTTTT AACCCCTCAA G-AATTTTAG 59170 | ||||||| |||||||||| ||| | ||| |||||||||| |||||| || | |||| | G-AATAATAA CCCACTAATT TACTCAAGGT TACCTCTTTT AACCCC-CAG GTAATTAGAC 118 TTATTAATAT AAACCCACGA AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCCTT 59110 ||||||| || |||||||| | | | |||||| ||| | | || ||||||| || |||||||||| TTATTAACAT AAACCCACTA ACTTTATAAT TAAAGTAGGA ATAGTCC-AA AACGTCCCTT 177 AAAACTTCAC CAGAAATCCG ACTCTGCCTG GGATTTGCGC AACCTGTGAC GGGCCGTCGT 59050 ||||| | ||||||||| || | | ||| ||| || ||| ||||||||| || ||||||| AAAACGTGTA AAGAAATCCG ACCCAGACTG GGA-TTACGC AACCTGTGAT GGCCCGTCGT 236 GCCTGCGACG GTCCGTCCTG CATGTCGTCG CAAAGTTCAG AGAATGGATT TTCACTGAAG 58990 |||||||||| |||||||||| || ||||||| ||| |||||| ||| | ||| | ||| ||| GCCTGCGACG GTCCGTCCTG CAGGTCGTCG CAAGGTTCAG AGACTCAATT TCCACCAAAG 296 TCTCCGTGAC GGTCCGTCAC GCCTGTGACG GTCCGTCCTG CCATTCCGTC ACGAAGTTCA 58930 || ||||| |||||||||| ||| |||||| ||||||| || ||||||||| |||||||||| AGTCTGTGAC GGTCCGTCAC GCCCGTGACG GTCCGTCGTG CCATTCCGTT ACGAAGTTCA 356 GAGAGTCGAT TTTCAGTACC CAATTTCAGA TTTTCTAAGT GTTTTGAAAC GAGACCCTGC 58870 |||||||||| ||| |||||| |||||||||| ||| ||||| |||||||||| ||||| | | GAGAGTCGAT TTTTAGTACC CAATTTCAGA ATTTTTAAGT GTTTTGAAAC GAGACTCCTC 416 GACGGTCCGT CGTGCCCATG ACGTTCCATC GTGGGGTCCG TCGCTTCTGC CAGTTTTTCC 58810 |||||||| | ||||| |||| ||| ||| || ||||| |||| ||| || | | |||||||| GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG TCGTCTCAAC CTGTTTTTCC 476 AGAATTGAAG TCTGTTGCTC AAAACGACTA AACGGGTCGT TACATT 58764 | || | || |||| | ||| |||||||||| ||| |||||| |||||| AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT TACATT 522 hqPGS_C08HBa0027D09.1-_SGN-E396057- (59288 58764) ******************************************************************************** EST sequence 100 -strand 658 n (File: SGN-E377132-) 1 TTCCTTCTTT TACCCTAATT AGCATATATT TAAGAATAAA AGATGGAATA ATAACCCACT 61 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 121 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 181 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 241 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 301 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 361 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 421 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 481 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 541 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 601 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAA Predicted gene structure (within gDNA segment 59919 to 55655): Exon 1 59272 58764 ( 509 n); cDNA 2 507 ( 506 n); score: 0.860 PPA cDNA 648 658 MATCH C08HBa0027D09.1- SGN-E377132- 0.860 509 0.774 C PGS_C08HBa0027D09.1-_SGN-E377132- (59272 58764) Alignment (genomic DNA sequence = upper lines): TCTTTCTTTT ACCCTAATTA GTATATAATT AAGAATAAAA GATGGCAATA ATACCCCACT 59213 || ||||||| |||||||||| | ||||| || |||||||||| ||||| |||| ||| |||||| TCCTTCTTTT ACCCTAATTA GCATATATTT AAGAATAAAA GATGG-AATA ATAACCCACT 60 AATTAACTTA GGGTTACCTC TTTTAACCCC TCAAG-AATT TTAGTTATTA ATATAAACCC 59154 |||| ||| | ||||||||| |||||||||| || | |||| | |||||| | |||||||| AATTTACTCA AGGTTACCTC TTTTAACCCC -CAGGTAATT AGACTTATTA ACATAAACCC 119 ACGAAATCTA TAATTAAGGA AAGAATAGTC CAAAAACGTC CCTTAAAACT TCACCAGAAA 59094 || || | || ||||||| | | |||||||| | |||||||| ||||||||| | ||||| ACTAACTTTA TAATTAAAGT AGGAATAGTC C-AAAACGTC CCTTAAAACG TGTAAAGAAA 178 TCCGACTCTG CCTGGGATTT GCGCAACCTG TGACGGGCCG TCGTGCCTGC GACGGTCCGT 59034 |||||| | | |||||| || ||||||||| ||| || ||| |||||||||| |||||||||| TCCGACCCAG ACTGGGA-TT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT 237 CCTGCATGTC GTCGCAAAGT TCAGAGAATG GATTTTCACT GAAGTCTCCG TGACGGTCCG 58974 |||||| ||| ||||||| || ||||||| | |||| ||| ||| || | |||||||||| CCTGCAGGTC GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG 297 TCACGCCTGT GACGGTCCGT CCTGCCATTC CGTCACGAAG TTCAGAGAGT CGATTTTCAG 58914 ||||||| || |||||||||| | |||||||| ||| |||||| |||||||||| ||||||| || TCACGCCCGT GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG 357 TACCCAATTT CAGATTTTCT AAGTGTTTTG AAACGAGACC CTGCGACGGT CCGTCGTGCC 58854 |||||||||| |||| ||||| |||||||||| ||||||||| | ||||||| || |||||| TACCCAATTT CAGAATTTCT AAGTGTTTTG AAACGAGACT CCTCGACGGT CCATCGTGCT 417 CATGACGTTC CATCGTGGGG TCCGTCGCTT CTGCCAGTTT TTCCAGAATT GAAGTCTGTT 58794 ||||||| || | ||||||| ||||||| | | || |||| ||||| || | || |||| | CATGACGGTC CGTCGTGGGT TCCGTCGTCT CAACCTGTTT TTCCAAAAAT AAAATCTGCT 477 GCTCAAAACG ACTAAACGGG TCGTTACATT 58764 ||||||||| ||||||| || |||||||||| ACTCAAAACG ACTAAACAGG TCGTTACATT 507 hqPGS_C08HBa0027D09.1-_SGN-E377132- (59272 58764) ******************************************************************************** EST sequence 85 -strand 525 n (File: SGN-E396069-) 1 AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA AACGTGTAAA GAAATCCGAC CCCCACCGGG 61 ATTACGCAAC CTGTGATGGC CCGTCGTGCC TGCGACGGTC CGTCCTGCAG GTCGTCGCAA 121 GGTTCAGAGA CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC 181 CGTCGTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCCAA TTTCAGAATT 241 TCTAAGTGTT TTGAAACGAG ACTCCTCGAC GGTCCATCGT GCTCATGACG GTCCGTCGTG 301 GGTTCCGTCG TCTCAACCTG TTTTTCCAAA AATAAAATCT GCTACTCAAA ACGACTAAAC 361 AGGTCGTTAC ATTTATGTTC TTCCTACTTA AATATTATTA TTATTTTACG ATTTATAACA 421 CTATTAGAAA CAAAGATTTT CTCAACCATG AATTAATGAA AAAATTATGC CATAAAATAT 481 AAAAAATTTA CTCATTTTTC ATTGAGCTAA TTCATAAAAA AAAAA Predicted gene structure (within gDNA segment 61519 to 55645): Exon 1 59138 58764 ( 375 n); cDNA 1 373 ( 373 n); score: 0.856 PPA cDNA 514 525 MATCH C08HBa0027D09.1- SGN-E396069- 0.856 375 0.714 C PGS_C08HBa0027D09.1-_SGN-E396069- (59138 58764) Alignment (genomic DNA sequence = upper lines): AAGGAAAGAA TAGTCCAAAA ACGTCCCTTA AAACTTCACC AGAAATCCGA CTCTGCCTGG 59079 || | | ||| |||||| ||| |||||||||| |||| | |||||||||| | | | || AAAGTAGGAA TAGTCC-AAA ACGTCCCTTA AAACGTGTAA AGAAATCCGA CCCCCACCGG 59 GATTTGCGCA ACCTGTGACG GGCCGTCGTG CCTGCGACGG TCCGTCCTGC ATGTCGTCGC 59019 || || |||| |||||||| | | |||||||| |||||||||| |||||||||| | |||||||| GA-TTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC AGGTCGTCGC 118 AAAGTTCAGA GAATGGATTT TCACTGAAGT CTCCGTGACG GTCCGTCACG CCTGTGACGG 58959 || ||||||| || | |||| ||| ||| || |||||| |||||||||| || ||||||| AAGGTTCAGA GACTCAATTT CCACCAAAGA GTCTGTGACG GTCCGTCACG CCCGTGACGG 178 TCCGTCCTGC CATTCCGTCA CGAAGTTCAG AGAGTCGATT TTCAGTACCC AATTTCAGAT 58899 |||||| ||| |||||||| | |||||||||| |||||||||| || ||||||| ||||||||| TCCGTCGTGC CATTCCGTTA CGAAGTTCAG AGAGTCGATT TTTAGTACCC AATTTCAGAA 238 TTTCTAAGTG TTTTGAAACG AGACCCTGCG ACGGTCCGTC GTGCCCATGA CGTTCCATCG 58839 |||||||||| |||||||||| |||| | || ||||||| || |||| ||||| || ||| ||| TTTCTAAGTG TTTTGAAACG AGACTCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG 298 TGGGGTCCGT CGCTTCTGCC AGTTTTTCCA GAATTGAAGT CTGTTGCTCA AAACGACTAA 58779 |||| ||||| || || || ||||||||| || | || | ||| | |||| |||||||||| TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA 358 ACGGGTCGTT ACATT 58764 || ||||||| ||||| ACAGGTCGTT ACATT 373 hqPGS_C08HBa0027D09.1-_SGN-E396069- (59138 58764) ******************************************************************************** EST sequence 70 -strand 519 n (File: SGN-E374998-) 1 GGAATAGTAC ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGATTAC 61 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 121 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 181 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 241 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 301 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 361 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 421 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 481 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 61469 to 55655): Exon 1 59131 58764 ( 368 n); cDNA 2 368 ( 367 n); score: 0.857 PPA cDNA 509 519 MATCH C08HBa0027D09.1- SGN-E374998- 0.857 368 0.709 C PGS_C08HBa0027D09.1-_SGN-E374998- (59131 58764) Alignment (genomic DNA sequence = upper lines): GAATAGTCCA AAAACGTCCC TTAAAAC-TT CACCAGAAAT CCGACTCTGC CTGGGATTTG 59073 ||||||| | | |||||||| ||||||| | | |||||| ||||| | | |||||| || GAATAGTAC- ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGA-TTA 59 CGCAACCTGT GACGGGCCGT CGTGCCTGCG ACGGTCCGTC CTGCATGTCG TCGCAAAGTT 59013 |||||||||| || || |||| |||||||||| |||||||||| ||||| |||| |||||| ||| CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGTCG TCGCAAGGTT 119 CAGAGAATGG ATTTTCACTG AAGTCTCCGT GACGGTCCGT CACGCCTGTG ACGGTCCGTC 58953 |||||| | |||| ||| ||| || || |||||||||| |||||| ||| |||||||||| CAGAGACTCA ATTTCCACCA AAGAGTCTGT GACGGTCCGT CACGCCCGTG ACGGTCCGTC 179 CTGCCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 58893 ||||||||| || ||||||| |||||||||| |||||| ||| |||||||||| ||| |||||| GTGCCATTCC GTTACGAAGT TCAGAGAGTC GATTTTTAGT ACCCAATTTC AGAATTTCTA 239 AGTGTTTTGA AACGAGACCC TGCGACGGTC CGTCGTGCCC ATGACGTTCC ATCGTGGGGT 58833 |||||||||| |||||||| | |||||||| | |||||| | |||||| ||| ||||||| | AGTGTTTTGA AACGAGACTC CTCGACGGTC CATCGTGCTC ATGACGGTCC GTCGTGGGTT 299 CCGTCGCTTC TGCCAGTTTT TCCAGAATTG AAGTCTGTTG CTCAAAACGA CTAAACGGGT 58773 |||||| || || ||||| |||| || | || |||| | |||||||||| |||||| ||| CCGTCGTCTC AACCTGTTTT TCCAAAAATA AAATCTGCTA CTCAAAACGA CTAAACAGGT 359 CGTTACATT 58764 ||||||||| CGTTACATT 368 hqPGS_C08HBa0027D09.1-_SGN-E374998- (59131 58764) ******************************************************************************** EST sequence 261 +strand 618 n (File: SGN-E396054+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAA Predicted gene structure (within gDNA segment 60419 to 56555): Exon 1 59321 58767 ( 555 n); cDNA 2 555 ( 554 n); score: 0.850 MATCH C08HBa0027D09.1- SGN-E396054+ 0.850 555 0.898 C PGS_C08HBa0027D09.1-_SGN-E396054+ (59321 58767) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACG GGTCGTTAC 58767 ||||||||| ||||||||| CGACTAAACA GGTCGTTAC 555 hqPGS_C08HBa0027D09.1-_SGN-E396054+ (59321 58767) ******************************************************************************** EST sequence 263 +strand 610 n (File: SGN-E396058+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTGTTT CCAAAAATAA AATCTGCTAC TCACAACGAC 541 TAAACAGGTC GTTACATTTA GGTTCTTCAT AGTTAACTAT TATTATTATT TTACGATTTA 601 TAACACTATT Predicted gene structure (within gDNA segment 60419 to 56635): Exon 1 59321 58767 ( 555 n); cDNA 2 555 ( 554 n); score: 0.847 MATCH C08HBa0027D09.1- SGN-E396058+ 0.847 555 0.910 C PGS_C08HBa0027D09.1-_SGN-E396058+ (59321 58767) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C -TCTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | |||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 416 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || |||||| || | || |||| | |||| || TCCGTCGTGG GTTCCGTCGT CTCAACCTGT GTTTCCAAAA ATAAAATCTG CTACTCACAA 536 CGACTAAACG GGTCGTTAC 58767 ||||||||| ||||||||| CGACTAAACA GGTCGTTAC 555 hqPGS_C08HBa0027D09.1-_SGN-E396058+ (59321 58767) ******************************************************************************** EST sequence 331 +strand 545 n (File: SGN-E241959+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACA Predicted gene structure (within gDNA segment 60409 to 57275): Exon 1 59321 58777 ( 545 n); cDNA 1 544 ( 544 n); score: 0.850 MATCH C08HBa0027D09.1- SGN-E241959+ 0.850 545 1.000 C PGS_C08HBa0027D09.1-_SGN-E241959+ (59321 58777) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C T-CTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | | ||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 295 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 415 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGACGT 58846 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCATCGTGG GGTCCGTCGC TTCTGCCAGT TTTTCCAGAA TTGAAGTCTG TTGCTCAAAA 58786 ||| |||||| | ||||||| || || || ||||||| || | || |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAAC 58777 ||||||||| CGACTAAAC 544 hqPGS_C08HBa0027D09.1-_SGN-E241959+ (59321 58777) ******************************************************************************** EST sequence 268 +strand 472 n (File: SGN-E236652+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GA Predicted gene structure (within gDNA segment 60409 to 58005): Exon 1 59321 58849 ( 473 n); cDNA 1 472 ( 472 n); score: 0.856 MATCH C08HBa0027D09.1- SGN-E236652+ 0.856 473 1.002 C PGS_C08HBa0027D09.1-_SGN-E236652+ (59321 58849) Alignment (genomic DNA sequence = upper lines): TCGATTCT-C T-CTCTCTC- TCCTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 59265 |||||||| | | ||||||| | |||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGTATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT 59205 |||||||||| ||| |||||| |||||||||| ||||||| || ||||| |||| |||||| ||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 TAGGGTTACC TCTTTTAACC CCTCAAG-AA TTTTAGTTAT TAATATAAAC CCACGAAATC 59146 | ||||||| |||||||||| || || | || || | |||| ||| |||||| |||| || | CAAGGTTACC TCTTTTAACC CC-CAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTAAG GAAAGAATAG TCCAAAAACG TCCCTTAAAA CTTCACCAGA AATCCGACTC 59086 ||||||||| | | |||||| ||| |||||| |||||||||| | | ||| |||||||| | TATAATTAAA GTAGGAATAG TCC-AAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 TGCCTGGGAT TTGCGCAACC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCATG 59026 | |||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||| | AGACTGGGA- TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 295 TCGTCGCAAA GTTCAGAGAA TGGATTTTCA CTGAAGTCTC CGTGACGGTC CGTCACGCCT 58966 ||||||||| ||||||||| | |||| || | ||| || ||||||||| ||||||||| TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC GTCCTGCCAT TCCGTCACGA AGTTCAGAGA GTCGATTTTC AGTACCCAAT 58906 |||||||||| ||| |||||| ||||| |||| |||||||||| ||||||||| |||||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCAAT 415 TTCAGATTTT CTAAGTGTTT TGAAACGAGA CCCTGCGACG GTCCGTCGTG CCCATGA 58849 |||||| ||| |||||||||| |||||||||| | | ||||| |||| ||||| | ||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA CTCCTCGACG GTCCATCGTG CTCATGA 472 hqPGS_C08HBa0027D09.1-_SGN-E236652+ (59321 58849) ******************************************************************************** EST sequence 118 -strand 548 n (File: SGN-E356257-) 1 GTTAACTAGA AAATTAAAGT GATAGAGTCA AATAATGTAA CGACCCGTTT AGTCGTTTTG 61 AGCAGCAGAC TTTATTTCTG GAAAAACTGG CAGAAGCGAC GGACCCCACG ACGGACCGTC 121 ATGGGCACGA CGGACCATCG CAGGGTCTCG TTTCAAAACC CTCTTTCTTT TACCCCAAAT 181 TAACATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 241 TCTTTTAACC CCAAGAATTT GAGTTATTAA TATAAACCCA CGAAATCTAT AATTAAGGAA 301 AGAATAGTCC AAAAACGTCC CTTAAAACGT GTAAGGAAAT CCGATTCTGC CTGGGATTTG 361 CGCAACCTGT GACGGGCCGT CGTGACTGTG ACGGTCCGTC CTGCAGGTCG TCGCAAGGGT 421 CAGAGAGTCA ATTTCCACTG AACAATCTAT GACGGTCCGT CACGCCTGTG ATGGTCCGTC 481 CTGTCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 541 AGTGTTTT Predicted gene structure (within gDNA segment 61438 to 58285): Exon 1 59278 58885 ( 394 n); cDNA 156 548 ( 393 n); score: 0.920 MATCH C08HBa0027D09.1- SGN-E356257- 0.920 394 0.719 C PGS_C08HBa0027D09.1-_SGN-E356257- (59278 58885) Alignment (genomic DNA sequence = upper lines): AAACCCTCTT TCTTTTACC- CTAATTAGTA TATAATTAAG AATAAAAGAT GGCAATAATA 59220 |||||||||| ||||||||| | ||||| | |||||||||| |||||||||| |||||||||| AAACCCTCTT TCTTTTACCC CAAATTAACA TATAATTAAG AATAAAAGAT GGCAATAATA 215 CCCCACTAAT TAACTTAGGG TTACCTCTTT TAACCCCTCA AGAATTTTAG TTATTAATAT 59160 |||||||||| |||||||||| |||||||||| ||| ||| || ||||||| || |||||||||| CCCCACTAAT TAACTTAGGG TTACCTCTTT TAA-CCC-CA AGAATTTGAG TTATTAATAT 273 AAACCCACGA AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCCTT AAAACTTCAC 59100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| | AAACCCACGA AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCCTT AAAACGTGTA 333 CAGAAATCCG ACTCTGCCTG GGATTTGCGC AACCTGTGAC GGGCCGTCGT GCCTGCGACG 59040 |||||||| | |||||||| |||||||||| |||||||||| |||||||||| | ||| |||| AGGAAATCCG ATTCTGCCTG GGATTTGCGC AACCTGTGAC GGGCCGTCGT GACTGTGACG 393 GTCCGTCCTG CATGTCGTCG CAAAGTTCAG AGAATGGATT TTCACTGAAG TCTCCGTGAC 58980 |||||||||| || ||||||| ||| | |||| ||| | ||| | ||||||| || |||| GTCCGTCCTG CAGGTCGTCG CAAGGGTCAG AGAGTCAATT TCCACTGAAC AATCTATGAC 453 GGTCCGTCAC GCCTGTGACG GTCCGTCCTG CCATTCCGTC ACGAAGTTCA GAGAGTCGAT 58920 |||||||||| |||||||| | |||||||||| ||||||||| |||||||||| |||||||||| GGTCCGTCAC GCCTGTGATG GTCCGTCCTG TCATTCCGTC ACGAAGTTCA GAGAGTCGAT 513 TTTCAGTACC CAATTTCAGA TTTTCTAAGT GTTTT 58885 |||||||||| |||||||||| |||||||||| ||||| TTTCAGTACC CAATTTCAGA TTTTCTAAGT GTTTT 548 hqPGS_C08HBa0027D09.1-_SGN-E356257- (59278 58885) ******************************************************************************** EST sequence 10 -strand 731 n (File: SGN-E578076-) 1 GCATCATCAA TCCCATTATT TTAGTTCATC ACGCCTTCTT TTATACCAAG GCCTCATTAT 61 GAACAAAGAG ATTAAGATTT TGCAAGATTT GGGATTCAAT AACTTCATCA TGCTTATATA 121 ATCACAATTA TATAGTTACA TTCATGCAAG CATACAATTA AGCACATAGC AGGGTTTACA 181 ATATTATCAA TACATATCAT TCTCTATTAA GAGTTTACTA CGAATATCGT AAGAGAAACC 241 ATAACCTACC TCCACCGAAG AATTGCGATC AACAAGTTAT CTTCTCAAAA TCCTTGCTAT 301 CCTCTTCGTT TCTCTTTCTT TTTCTGTTTT CTCTTTGTTC TTTCTATTTT TCTTATTCAA 361 ACGTCCTAAC GAGCAAAACA GAGAACAAAA CAACCCTAAA AATTTCAACT TTTTTCGGTT 421 TCCCGACTTC CAATTTACCA GAGATATAGA TAATTCACTG AAATTGAACA AGGGTTAAGA 481 GCAGAAGAAA TTTACGTTGT GATTAATTGG GGCAAAGCGT CGAACAGTTG AACTGCAAAT 541 TTGTTCTTCA GTTATAGATA CAAAAGATAG AGTCTTATAT GAGTTAAAGA AGACGTAGAG 601 TATACCCTAG TAAGCGAGCT GACCACGGCG GAATGAGGTG GTGAGTTGGT GGGTTTCGTC 661 GGTCAACCAA GAAATGAAAA GGAAATTGAA GTATGAAAAA CTACAGAAAA ATGACGCGTT 721 TGGCCGAGAA A Predicted gene structure (within gDNA segment 61492 to 54107): Exon 1 59635 59301 ( 335 n); cDNA 1 332 ( 332 n); score: 0.839 MATCH C08HBa0027D09.1- SGN-E578076- 0.839 335 0.458 C PGS_C08HBa0027D09.1-_SGN-E578076- (59635 59301) Alignment (genomic DNA sequence = upper lines): GCATCATCAA TCCCATTACT TTAATTCATC AAGCCTTCTT CTATACCAAG GCATCATCAT 59576 |||||||||| |||||||| | ||| |||||| | |||||||| ||||||||| || |||| || GCATCATCAA TCCCATTATT TTAGTTCATC ACGCCTTCTT TTATACCAAG GCCTCATTAT 60 TAATAATGTA TATTAAAGTT TCTTTTCAAG ATTTGGGATT CAATATTTTC ATCATGCTTA 59516 || || | | ||| ||| | ||| |||| |||||||||| ||||| ||| |||||||||| GAACAAAG-A GATT-AAG-A T-TTTGCAAG ATTTGGGATT CAATAACTTC ATCATGCTTA 116 TCTTATCACA ATCACATAGT CATATTCATG CAAGCATACA ATTAAGCATA TAGCAGGGTT 59456 | | |||||| || | ||||| | ||||||| |||||||||| |||||||| | |||||||||| TATAATCACA ATTATATAGT TACATTCATG CAAGCATACA ATTAAGCACA TAGCAGGGTT 176 TACAATATTA TCAATACATA TCATTCTCTA TTAAGAGTTT ACTACGAATA TCGTAAGAGA 59396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAATATTA TCAATACATA TCATTCTCTA TTAAGAGTTT ACTACGAATA TCGTAAGAGA 236 AACCATAACC TACCTCCACC GAAGAATTG- AATCAAGCAA G-AATTTTCC CAAAAGCTTT 59338 |||||||||| |||||||||| ||||||||| ||||| ||| | || ||| ||||| | || AACCATAACC TACCTCCACC GAAGAATTGC GATCAA-CAA GTTATCTTCT CAAAATCCTT 295 GTTTCTCCCT TCTCGTTCGA TTCTCTCTCT CTCTCCT 59301 | | | || || | |||| | ||| | | || GCTATCCTCT TCGTTTCTCT TTCTTTTTCT GTTTTCT 332 hqPGS_C08HBa0027D09.1-_SGN-E578076- (59635 59301) ******************************************************************************** EST sequence 156 -strand 717 n (File: SGN-E349726-) 1 TTATGTTCAT TAGATTGAGT ATATAACATC TTTCAAGATT CATTGTCTTT ATTTCTCTTG 61 TGTCGGTACG TGACATTCCG CTCCNTCATA TTCATTAATC TTCTTGTGTC GGTACGTGAT 121 ACTCTGATCC CCTAAATCTA CGTGTCGGAA CGTGACACTC CGATCCCCTA AATCTACGTG 181 TCGGTTCGTG ACACCTGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 241 AATCTACGTG TCGGTTCGTG ACACCCGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC 301 CGATCCCCTA ATCTATGTGT TGGTTCGTGA CACCTGATCC CTTAATCTAC GTGTCGGTTT 361 GTGACACCCG ATCCCCTAAT TCTACGTGTC AGTTCGTGAC ACCCGATCCC CTAATCTCAT 421 TCTATCAATT CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCAATCTCAT TACTTTAGTT 481 CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCATTAAAAA GAGATTAGGT TTTTACAAGA 541 TTTGGGATTC AATAACTTCA TCATGCTTAT ATAATAACAA TTATATAGTT ACATTCATGC 601 AAGCATACAA TTAAGCACAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT 661 TAAGAGTTTA CTACGAATAT CGTAAGAGAA ACAATAACCT ACCTCCACCG AAGACTA Predicted gene structure (within gDNA segment 60732 to 58741): Exon 1 60102 59371 ( 732 n); cDNA 3 714 ( 712 n); score: 0.879 MATCH C08HBa0027D09.1- SGN-E349726- 0.879 732 1.021 C PGS_C08HBa0027D09.1-_SGN-E349726- (60102 59371) Alignment (genomic DNA sequence = upper lines): ATGTTCATTA GATTGAGTAT ATTAACATCT TTCAAGATTC ATTATCTTTA TTTCTCTTGT 60043 |||||||||| |||||||||| | |||||||| |||||||||| ||| |||||| |||||||||| ATGTTCATTA GATTGAGTAT A-TAACATCT TTCAAGATTC ATTGTCTTTA TTTCTCTTGT 61 GTCGGTACGT GACACTCCGC TCCCTCATAT TCATTATTCC TCTTGTGTCG GTTCGTGACA 59983 |||||||||| |||| ||||| ||| |||||| |||||| || |||||||||| || ||||| | GTCGGTACGT GACATTCCGC TCCNTCATAT TCATTAATCT TCTTGTGTCG GTACGTGATA 121 CCTCGATCCC CTAATTCTAC GTGTCGGTTC GTGACAC-CC GATCCCCTAA TTCTACGTGT 59924 | |||||| |||| ||||| ||||||| | ||||||| || |||||||||| ||||||||| CTCTGATCCC CTAAATCTAC GTGTCGGAAC GTGACACTCC GATCCCCTAA ATCTACGTGT 181 CGATTCGTGA CACCCGATCC CCTAATTCTA CGTGTCGGTT CGTGACACCC GATCCCCTAA 59864 || ||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| |||||||||| CGGTTCGTGA CACCTGATCC CCTAAATCTA CGTGTCGGTT CGTGACACCC GATCCCCTAA 241 ATCTACGTGT CGGTTCGTGA CACCCGATCT CCTAATTCTA CGTGTCGGTT CGTGACACCC 59804 |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| ATCTACGTGT CGGTTCGTGA CACCCGATCC CCTAAATCTA CGTGTCGGTT CGTGACACCC 301 GATCTCCTAA TTCTACGTGT CGGTTCGTGA CACCCGATCC CCTAATTCTA CGTGTCGGTT 59744 |||| ||||| |||| |||| ||||||||| |||| ||||| | ||| |||| |||||||||| GATCCCCTAA -TCTATGTGT TGGTTCGTGA CACCTGATCC CTTAA-TCTA CGTGTCGGTT 359 CGTGACACCC GATCCACTAA TATCATTCTG TAAATCATCA AGCCTTCTCT ATACCAAGGC 59684 ||||||||| ||||| |||| | || | | | | || || ||| | ||| | TGTGACACCC GATCCCCTAA T-TC-TAC-G T--GTC---- AG--TTCGTG ACACC-CGAT 407 ATCCTCAATC CCATTACTTT AATTCATCAA GCCTTCTTCT ATACCAAGGC ATCATCAATC 59624 ||| |||| |||| | |||||||||| ||||||| | ||||||||| |||||||||| CCCCT-AATC TCATTCTATC AATTCATCAA GCCTTCTCCC TTACCAAGGC ATCATCAATC 466 CCATTACTTT AATTCATCAA GCCTTCTTCT ATACCAAGGC ATCATCATTA ATAATGTATA 59564 ||||||||| | |||||||| ||||||| | ||||||||| |||||||||| | || | | | TCATTACTTT AGTTCATCAA GCCTTCTCCC TTACCAAGGC ATCATCATTA A-AAAG-AGA 524 TTAAAGTTTC TTTTCAAGAT TTGGGATTCA ATATTTTCAT CATGCTTATC TTATCACAAT 59504 || || || ||| |||||| |||||||||| ||| ||||| ||||||||| | || ||||| TT--AGGTT- TTTACAAGAT TTGGGATTCA ATAACTTCAT CATGCTTATA TAATAACAAT 581 CACATAGTCA TATTCATGCA AGCATACAAT TAAGCATATA GCAGGGTTTA CAATATTATC 59444 | ||||| | ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TATATAGTTA CATTCATGCA AGCATACAAT TAAGCACATA GCAGGGTTTA CAATATTATC 641 AATACATATC ATTCTCTATT AAGAGTTTAC TACGAATATC GTAAGAGAAA CCATAACCTA 59384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| AATACATATC ATTCTCTATT AAGAGTTTAC TACGAATATC GTAAGAGAAA CAATAACCTA 701 CCTCCACCGA AGA 59371 |||||||||| ||| CCTCCACCGA AGA 714 hqPGS_C08HBa0027D09.1-_SGN-E349726- (60102 59371) ******************************************************************************** EST sequence 300 +strand 337 n (File: SGN-E357033+) 1 ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 61 AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 121 GTCACGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATCATGTTCA 181 TTAGATTTAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGACGGAA 241 CATGACATTC CGCTCCCTCA TATTCATTAA TCCTCTTGTG TGAACACATG ACACTCCGAT 301 CCCCTAAATC TACATGACAG TTTCATGAAC GCTATCC Predicted gene structure (within gDNA segment 61451 to 58717): Exon 1 60275 59939 ( 337 n); cDNA 1 337 ( 337 n); score: 0.895 MATCH C08HBa0027D09.1- SGN-E357033+ 0.895 337 1.000 C PGS_C08HBa0027D09.1-_SGN-E357033+ (60275 59939) Alignment (genomic DNA sequence = upper lines): ACTGAGTAGA TATCATCGGC CAACTCAAAA TAGAAAACAG TATATACCAA GTAATATCAT 60216 ||||| |||| |||||||| | |||||||||| |||||| || |||||| ||| | | |||||| ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 60 AAACTCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 60156 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 120 GTCAAGTTCA CTCATGAGGA CTCAAGCCCC AATACCATAC TCATTTGGGA ATCATGTTCA 60096 |||| ||||| | |||||||| |||||||| | |||||||||| |||||||||| |||||||||| GTCACGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATCATGTTCA 180 TTAGATTGAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGTCGGTA 60036 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||| ||| | TTAGATTTAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGACGGAA 240 CGTGACACTC CGCTCCCTCA TATTCATTAT TCCTCTTGTG TCGGTTCGTG ACACCTCGAT 59976 | ||||| || |||||||||| ||||||||| |||||||||| | | || |||| |||| CATGACATTC CGCTCCCTCA TATTCATTAA TCCTCTTGTG TGAACACATG ACACTCCGAT 300 CCCCTAATTC TACGTGTC-G GTTCGTGACA CCCGATCC 59939 ||||||| || ||| || | | ||| ||| | | | |||| CCCCTAAATC TACATGACAG TTTCATGA-A CGCTATCC 337 hqPGS_C08HBa0027D09.1-_SGN-E357033+ (60275 59939) ******************************************************************************** EST sequence 135 -strand 239 n (File: SGN-E391780-) 1 ATCAACAAAT ACTATATCAT TAACAATTAC CGTCAAGTTC ACACATGAGG ACTCAAGCCT 61 CAATACCATA CTCATTTGGG AATCATGTTC ATTAGATTGA GTATATTAAC ATCTTTCAAG 121 ATTCATTATC TTTATTTCTC TTGTGTCGGT ACGTGACACT CCGCTCCCTC AATATTCATT 181 AATCCTCTTG TGTCGGTACG TGACACTCCG ATCCCCTAAA TCTATATGTC GGTTTGTGA Predicted gene structure (within gDNA segment 60886 to 58736): Exon 1 60184 59949 ( 236 n); cDNA 3 239 ( 237 n); score: 0.939 MATCH C08HBa0027D09.1- SGN-E391780- 0.939 236 0.987 C PGS_C08HBa0027D09.1-_SGN-E391780- (60184 59949) Alignment (genomic DNA sequence = upper lines): CAACAAGCAC TATATCATTA ACAATTACCG TCAAGTTCAC TCATGAGGAC TCAAGCCCCA 60125 |||||| || |||||||||| |||||||||| |||||||||| ||||||||| ||||||| || CAACAAATAC TATATCATTA ACAATTACCG TCAAGTTCAC ACATGAGGAC TCAAGCCTCA 62 ATACCATACT CATTTGGGAA TCATGTTCAT TAGATTGAGT ATATTAACAT CTTTCAAGAT 60065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACCATACT CATTTGGGAA TCATGTTCAT TAGATTGAGT ATATTAACAT CTTTCAAGAT 122 TCATTATCTT TATTTCTCTT GTGTCGGTAC GTGACACTCC GCTCCCTC-A TATTCATTAT 60006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| TCATTATCTT TATTTCTCTT GTGTCGGTAC GTGACACTCC GCTCCCTCAA TATTCATTAA 182 TCCTCTTGTG TCGGTTCGTG ACACCTCGAT CCCCTAATTC TACGTGTCGG TTCGTGA 59949 |||||||||| ||||| |||| |||| |||| ||||||| || || |||||| || |||| TCCTCTTGTG TCGGTACGTG ACACTCCGAT CCCCTAAATC TATATGTCGG TTTGTGA 239 hqPGS_C08HBa0027D09.1-_SGN-E391780- (60184 59949) ******************************************************************************** EST sequence 107 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 61865 to 58746): Exon 1 60428 59950 ( 479 n); cDNA 1 481 ( 481 n); score: 0.916 MATCH C08HBa0027D09.1- SGN-E246710- 0.916 479 0.996 C PGS_C08HBa0027D09.1-_SGN-E246710- (60428 59950) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAGCGTTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTAGAA 60369 |||||||||| |||||| ||| |||||||||| || |||| | || | |||| |||||| ||| AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GT-AGTAAGA CTGGCTTGAA 59 TTACCGTTGA GTTGAGGACG ACGGCACGTT TGTTGCACTC CACAAAT-AA CAAGAAGAAA 60310 |||| ||||| ||||| ||| | |||||||| || ||||||| ||||||| || ||||||| | TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTGCACTC CACAAATAAA CAAGAAG-AG 118 AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAACTC 60250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAACTC 178 AAAATAGAAA AC-A-GTATA TACCAAGTAA TATCATAAAC TCAACTATGA TACTCAACAT 60192 |||||||||| | | |||| |||||||||| ||||||||| |||||||||| |||||||||| AAAATAGAAA TCAATATATA TACCAAGTAA TATCATAAAA TCAACTATGA TACTCAACAT 238 GTAGCAACAA CAAGCACTAT ATCATTAACA ATTACCGTCA AGTTCACTCA TGAGGACTCA 60132 |||||||||| ||| ||||| |||||||||| |||||||||| ||||||| || |||||||||| GTAGCAACAA CAAATACTAT ATCATTAACA ATTACCGTCA AGTTCACACA TGAGGACTCA 298 AGCCCCAATA CCATACTCAT TTGGGAATCA TGTTCATTAG ATTGAGTATA TTAACATCTT 60072 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTCAATA CCATACTCAT TTGGGAATCA TGTTCATTAG ATTGAGTATA TTAACATCTT 358 TCAAGATTCA TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCGCT CCCTC-ATAT 60013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TCAAGATTCA TTATCTTTAT TTCTCTTGTG TCGGTACGTG ACACTCCGCT CCCTCAATAT 418 TCATTATTCC TCTTGTGTCG GTTCGTGACA CCTCGATCCC CTAATTCTAC GTGTCGGTTC 59953 |||||| ||| |||||||||| || ||||||| | ||||||| |||| |||| |||||||| TCATTAATCC TCTTGTGTCG GTACGTGACA CTCCGATCCC CTAAATCTAT ATGTCGGTTT 478 GTG 59950 ||| GTG 481 hqPGS_C08HBa0027D09.1-_SGN-E246710- (60428 59950) ******************************************************************************** EST sequence 326 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 61647 to 57704): Exon 1 60567 59964 ( 604 n); cDNA 49 638 ( 590 n); score: 0.828 PPA cDNA 18 1 MATCH C08HBa0027D09.1- SGN-E546506+ 0.828 604 0.827 C PGS_C08HBa0027D09.1-_SGN-E546506+ (60567 59964) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA 60508 |||||||||| |||||||||| |||||||||| |||||||| | ||| |||| | ||| || TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC TCAAATTACT TA-ACTAGGA 107 GTTTCTAAGA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGGAGTTC AAGGCATCAA 60448 | ||||||| | | ||||| | ||| ||| |||||||||| |||| | ||| |||||||||| ATGTCTAAGA A-C--AAAAT AACTAAAAAG CTAGTCCATG CCGGAAATTC AAGGCATCAA 164 GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA A-GATCCGGT 60389 ||| ||||| |||||| ||| |||||||||| || || |||| |||||||||| | |||| | GACTTGAAGA AGAAGACCCA GTCCAAGCTA GACGCATTAG CTCACCCTGA ATTTTCCGAT 224 GTGACGAAGA CTGGCTAGAA TTACCGTTGA GTTGAGGACG ACGGCACGTT TGTTGCACTC 60329 | ||||| ||||||||| ||| ||||| ||||| | | |||| ||||| || |||| | GAAGTGAAGA CTGGCTAGAT CTACTGTTGA GTTGAAGTTG ACGGAACGTT TGCTGCATTA 284 CACAAATAAC AAGAAGAAAA ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT 60269 |||||||||| || || ||| |||| ||||| |||||||||| || || ||| ||||||||| CACAAATAAC AAAGAGGAAA ACATGAAAGT AGGGGTCAGT AC-AACCACA CGTACTGAGT 343 AGATATCATC GGCCAACTCA AAATAGAAAA CAGTATATAC CAAGTAATAT CATAAACTCA 60209 |||||||||| |||||||||| |||||| || ||||||||| ||| ||||| |||| ||| AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATATAT CAA-TAATAA TGTAAA-TCA 401 ACTATGATAC TCAACATGTA GCAACAACAA GCACTATATC ATTAACAATT ACCGTCAAGT 60149 |||| |||| |||||||||| |||| ||| | || | || || || || | || | ||| ACTACAATAC TCAACATGTA GCAATAAC-A CCATGAATTC ATCAATAACT ACAACCGAGT 460 TCACTCATGA GGACTCAAGC CCCAATACCA TACTCATTTG GGAATCATGT TCATTAGATT 60089 |||| ||||| |||||||||| | |||||||| |||||||||| ||||| | || |||||||||| TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 520 GAGTATATT- AACATCTTTC AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC 60030 ||||||||| | ||||||| |||||||||| |||||| || |||||||||| |||||||||| GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 580 ACTCCGCTCC CTCATATTCA TTATTCCTCT TGTGTCGGTT CGTGACACCT CGATCCCCTA 59970 |||||| | | ||| |||| || | | || ||| ||| |||| ||| |||| ||| ACTCCGAT-C CTC-TATT-T CTA-T-C-CT GGTGCCGGAA CGTGGCACTC CGAT--CCTC 632 ATTCTA 59964 |||||| ATTCTA 638 hqPGS_C08HBa0027D09.1-_SGN-E546506+ (60567 59964) ******************************************************************************** EST sequence 159 -strand 236 n (File: SGN-E209683-) 1 CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 61 AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 121 ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 181 ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA Predicted gene structure (within gDNA segment 60938 to 58143): Exon 1 60328 60175 ( 154 n); cDNA 1 154 ( 154 n); score: 0.864 MATCH C08HBa0027D09.1- SGN-E209683- 0.864 154 0.653 C PGS_C08HBa0027D09.1-_SGN-E209683- (60328 60175) Alignment (genomic DNA sequence = upper lines): CACAAATAAC AAGAAGAAAA ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT 60269 |||||||||| ||||||| || |||||||||| |||||||||| ||||| |||| |||||||||| CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 60 AGATATCATC GGCCAACTCA AAATAGAAAA CAGTATATAC CAAGTAATAT CATAAACTCA 60209 |||||||||| |||||||||| |||||| || |||||| || ||| ||||| |||||| ||| AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 120 ACTATGATAC TCAACATGTA GCAACAACAA GCAC 60175 |||| || | | |||||| | ||| | | || ACTAATATCC TTAACATGCA GCATTTATAG TTAC 154 hqPGS_C08HBa0027D09.1-_SGN-E209683- (60328 60175) ******************************************************************************** EST sequence 112 -strand 580 n (File: SGN-E356206-) 1 GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 61 TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 121 CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 181 TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 241 CTACTATTAT TAAACATCTA TTATTCCCAA AACCTGGAAG TCATCATCAC AAGAACATCT 301 ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA AGAAGCTAGT 361 CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC 421 GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG TTGAGTCGAA 481 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT 541 CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA Predicted gene structure (within gDNA segment 62887 to 59653): Exon 1 62167 62152 ( 16 n); cDNA 77 91 ( 15 n); score: 0.750 Intron 1 62151 60741 (1411 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 60740 60253 ( 488 n); cDNA 92 580 ( 489 n); score: 0.949 MATCH C08HBa0027D09.1- SGN-E356206- 0.949 504 0.869 C PGS_C08HBa0027D09.1-_SGN-E356206- (62167 62152,60740 60253) Alignment (genomic DNA sequence = upper lines): AATGCCATGA TTAGCAGCAT TGTGCATGTA ACAAATCTGC CTCGGAGAAG AGTTCTAAAA 62108 ||||| ||| | | || AATGCTCTGA T-ACCA.... .......... .......... .......... .......... 91 TGGTTTGAAG AAAGACGGTC TGAAGAAGGG GTTCCTGCTC ATCGACTTCC ATACCAACCA 62048 .......... .......... .......... .......... .......... .......... 91 TCCTCTATAT CTGAATAGTA CTTTCCTTGT AAATACCAGC TAAAAGAAGT AGTTTCTACA 61988 .......... .......... .......... .......... .......... .......... 91 TGTGGAACTG GGATACCAGA ATTATTTGAT ACGGTCACAG CTTCCTTTGG CTATTCGTCT 61928 .......... .......... .......... .......... .......... .......... 91 TACTGAAGCT ATAACAATAG CAATATCCTC TGTAAGGAAA AGACGGTGAT CAACAAAAAG 61868 .......... .......... .......... .......... .......... .......... 91 AAATGAACAT CTTTACAGCT TTTGTCTGTT CCTATCTTCT TTAGCTCCAT TGAGTCTAAC 61808 .......... .......... .......... .......... .......... .......... 91 TATGTATACA TTTTTTCTTA CATTCCAGCA TACTTCGTTA ATAAAAGGGA TATTGTAATA 61748 .......... .......... .......... .......... .......... .......... 91 ATATAATTAA ACATGGTGAC CTAAGTATTT TGAATTTCAA TGTAATAGGC AGTAAAAATA 61688 .......... .......... .......... .......... .......... .......... 91 AAGCTAAAAA TATAAAATAA AATTGTAATA GCCAGTAATA TAGATAGACG ATAGTAATGT 61628 .......... .......... .......... .......... .......... .......... 91 ATTTCATGTA TTAATCTTCT ATTTCATAAT AACTGTATCC TAATTTAATT ATTTAGTTTA 61568 .......... .......... .......... .......... .......... .......... 91 TAAAATGAAA AGAATTTTAT TATATATTTC TTTTTCTAAT TTAGTATTAA TAACTATATA 61508 .......... .......... .......... .......... .......... .......... 91 AAATTTATAA TTAAATTTAA ATATTTATAA CATTATAAAA AAGAATGATA AAATAATAAA 61448 .......... .......... .......... .......... .......... .......... 91 TAAAATATAC ATGTTCTGAT TTCTATCTAG TAATATATAT AAAATATTTT CTCTTATTAT 61388 .......... .......... .......... .......... .......... .......... 91 ATAAGAGGGA GTGTGCACAA ATTGCAAGTG CCTCCCCGTC AACATGTCCG CTTGGCATAG 61328 .......... .......... .......... .......... .......... .......... 91 GGATCATTTG GGTATTTTGT AATTATTTTG CGAGAAATCT ATTGTACTTT GTGCTATTGA 61268 .......... .......... .......... .......... .......... .......... 91 TCATTTACTT CTCTCTTTTT TCTTTCATCA TTGCTTAATG AATTGGAGGA TTTGAAGTAA 61208 .......... .......... .......... .......... .......... .......... 91 TTCACATTTA TGTTAGCAGT AAGTCGAAAA ATTAATATCC ACACATATTT AAGAGGATAA 61148 .......... .......... .......... .......... .......... .......... 91 ATATCAAGTT GTAATTATAC TCATTAAAAA TAAATGACTT ATAGCATATT ATTATCATCT 61088 .......... .......... .......... .......... .......... .......... 91 TACAGTACAT CAATAAATAA TATATTAATT AAAAATATTT AAAAATAAAC TATTTATAGC 61028 .......... .......... .......... .......... .......... .......... 91 ATATTATTAT CAAATTATAG CATATTAACT AACAATATAT TAATAAAAAA TTTATATTAT 60968 .......... .......... .......... .......... .......... .......... 91 TATTTAAGTA CTAATTATTA TGTTTAAATA ATCAGTTTCA TTTATTCACT TACCTTTTAT 60908 .......... .......... .......... .......... .......... .......... 91 CAACAAAACC TTTTAAATTA TTACTGATTA ATCAATTACC TTTTAAAGTT TTTAATATAA 60848 .......... .......... .......... .......... .......... .......... 91 ATAATAAATT ATTAAATATT AATCAATGAC CTTTTAAAGT TTTTAATATA AATAATAAAT 60788 .......... .......... .......... .......... .......... .......... 91 TATTAAATAT TAATCATTTA CCTTTTAATA TATTTAATAT CAATAATAAA TTTGTCACGA 60728 | |||||||||| .......... .......... .......... .......... .......AGT TTTGTCACGA 104 CCCAAATCCG GGCCGCGACT GGCACCCACA CTTACGCTCC TATGTGAGCG AACCAACCAA 60668 |||||||||| |||||| ||| |||||||||| ||||| |||| |||||||||| |||||||||| CCCAAATCCG GGCCGCCACT GGCACCCACA CTTACCCTCC TATGTGAGCG AACCAACCAA 164 TCTAAACCTT AACATTTCAA GGTAATATCA ACATAAAGTA ATGCGGAAGA CTTAAACTCA 60608 |||||||||| |||||||||| |||||| || ||| |||||| |||||||||| |||||||||| TCTAAACCTT AACATTTCAA TGTAATAGCA ACAGAAAGTA ATGCGGAAGA CTTAAACTCA 224 TTAATAAAAT CAATAACTAT TATTATTCAA CATCTATTAT TCCCCAAAAT CTGGAAGTCA 60548 |||||||||| ||||||||| ||||||| || |||||||||| | ||||||| |||||||||| TTAATAAAAT CAATAACTAC TATTATTAAA CATCTATTAT T-CCCAAAAC CTGGAAGTCA 283 TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA GTTTCTAAGA AGCT-AAAAA 60489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA GTTTCTAAGA AGCTAAAAAA 343 -TACATAAGA AGCTAGTCCA TGCCGGGAGT TCAAGGCATC AAGACATGAA GGAGAAGATC 60430 ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTACATAAGA AGCTAGTCCA TGCCGGAAGT TCAAGGCATC AAGACATGAA GGAGAAGATC 403 CAGTCCAAGC TAGAAGCGTT AGCTCACCCT GAAGATCCGG TGTGACGAAG ACTGGCTAGA 60370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CAGTCCAAGC TAGAAGCGTT AGCTCACCCT GAAGATCCGG TGTGACGAAG ACTGGCTTGA 463 ATTACCGTTG AGTTGAGGAC GACGGCACGT TTGTTGCACT CCACAAATAA CAAGAAGAAA 60310 |||| |||| ||| || || |||||||||| ||| |||||| |||||||||| |||||||||| GTTACTGTTG AGTCGAAGAT GACGGCACGT TTGCTGCACT CCACAAATAA CAAGAAGAAA 523 AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAA 60253 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||||| AACATAAAAG TAGGGGTCAG TACAAAACAC GGCTACTGAG TAGATATCAT CGGCCAA 580 hqPGS_C08HBa0027D09.1-_SGN-E356206- (60740 60253) ******************************************************************************** EST sequence 65 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 63777 to 59653): Exon 1 62167 62152 ( 16 n); cDNA 226 240 ( 15 n); score: 0.750 Intron 1 62151 60741 (1411 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 60740 60253 ( 488 n); cDNA 241 729 ( 489 n); score: 0.947 MATCH C08HBa0027D09.1- SGN-E351546- 0.947 504 0.691 C PGS_C08HBa0027D09.1-_SGN-E351546- (62167 62152,60740 60253) Alignment (genomic DNA sequence = upper lines): AATGCCATGA TTAGCAGCAT TGTGCATGTA ACAAATCTGC CTCGGAGAAG AGTTCTAAAA 62108 ||||| ||| || || AATGCTCTGA -TACCA.... .......... .......... .......... .......... 240 TGGTTTGAAG AAAGACGGTC TGAAGAAGGG GTTCCTGCTC ATCGACTTCC ATACCAACCA 62048 .......... .......... .......... .......... .......... .......... 240 TCCTCTATAT CTGAATAGTA CTTTCCTTGT AAATACCAGC TAAAAGAAGT AGTTTCTACA 61988 .......... .......... .......... .......... .......... .......... 240 TGTGGAACTG GGATACCAGA ATTATTTGAT ACGGTCACAG CTTCCTTTGG CTATTCGTCT 61928 .......... .......... .......... .......... .......... .......... 240 TACTGAAGCT ATAACAATAG CAATATCCTC TGTAAGGAAA AGACGGTGAT CAACAAAAAG 61868 .......... .......... .......... .......... .......... .......... 240 AAATGAACAT CTTTACAGCT TTTGTCTGTT CCTATCTTCT TTAGCTCCAT TGAGTCTAAC 61808 .......... .......... .......... .......... .......... .......... 240 TATGTATACA TTTTTTCTTA CATTCCAGCA TACTTCGTTA ATAAAAGGGA TATTGTAATA 61748 .......... .......... .......... .......... .......... .......... 240 ATATAATTAA ACATGGTGAC CTAAGTATTT TGAATTTCAA TGTAATAGGC AGTAAAAATA 61688 .......... .......... .......... .......... .......... .......... 240 AAGCTAAAAA TATAAAATAA AATTGTAATA GCCAGTAATA TAGATAGACG ATAGTAATGT 61628 .......... .......... .......... .......... .......... .......... 240 ATTTCATGTA TTAATCTTCT ATTTCATAAT AACTGTATCC TAATTTAATT ATTTAGTTTA 61568 .......... .......... .......... .......... .......... .......... 240 TAAAATGAAA AGAATTTTAT TATATATTTC TTTTTCTAAT TTAGTATTAA TAACTATATA 61508 .......... .......... .......... .......... .......... .......... 240 AAATTTATAA TTAAATTTAA ATATTTATAA CATTATAAAA AAGAATGATA AAATAATAAA 61448 .......... .......... .......... .......... .......... .......... 240 TAAAATATAC ATGTTCTGAT TTCTATCTAG TAATATATAT AAAATATTTT CTCTTATTAT 61388 .......... .......... .......... .......... .......... .......... 240 ATAAGAGGGA GTGTGCACAA ATTGCAAGTG CCTCCCCGTC AACATGTCCG CTTGGCATAG 61328 .......... .......... .......... .......... .......... .......... 240 GGATCATTTG GGTATTTTGT AATTATTTTG CGAGAAATCT ATTGTACTTT GTGCTATTGA 61268 .......... .......... .......... .......... .......... .......... 240 TCATTTACTT CTCTCTTTTT TCTTTCATCA TTGCTTAATG AATTGGAGGA TTTGAAGTAA 61208 .......... .......... .......... .......... .......... .......... 240 TTCACATTTA TGTTAGCAGT AAGTCGAAAA ATTAATATCC ACACATATTT AAGAGGATAA 61148 .......... .......... .......... .......... .......... .......... 240 ATATCAAGTT GTAATTATAC TCATTAAAAA TAAATGACTT ATAGCATATT ATTATCATCT 61088 .......... .......... .......... .......... .......... .......... 240 TACAGTACAT CAATAAATAA TATATTAATT AAAAATATTT AAAAATAAAC TATTTATAGC 61028 .......... .......... .......... .......... .......... .......... 240 ATATTATTAT CAAATTATAG CATATTAACT AACAATATAT TAATAAAAAA TTTATATTAT 60968 .......... .......... .......... .......... .......... .......... 240 TATTTAAGTA CTAATTATTA TGTTTAAATA ATCAGTTTCA TTTATTCACT TACCTTTTAT 60908 .......... .......... .......... .......... .......... .......... 240 CAACAAAACC TTTTAAATTA TTACTGATTA ATCAATTACC TTTTAAAGTT TTTAATATAA 60848 .......... .......... .......... .......... .......... .......... 240 ATAATAAATT ATTAAATATT AATCAATGAC CTTTTAAAGT TTTTAATATA AATAATAAAT 60788 .......... .......... .......... .......... .......... .......... 240 TATTAAATAT TAATCATTTA CCTTTTAATA TATTTAATAT CAATAATAAA TTTGTCACGA 60728 | |||||||||| .......... .......... .......... .......... .......AGT TTTGTCACGA 253 CCCAAATCCG GGCCGCGACT GGCACCCACA CTTACGCTCC TATGTGAGCG AACCAACCAA 60668 |||||||||| |||||| ||| |||||||||| ||||| |||| |||||||||| |||||||||| CCCAAATCCG GGCCGCCACT GGCACCCACA CTTACCCTCC TATGTGAGCG AACCAACCAA 313 TCTAAACCTT AACATTTCAA GGTAATATCA ACATAAAGTA ATGCGGAAGA CTTAAACTCA 60608 |||||||||| |||||||||| |||||| || ||| |||||| |||||||||| |||||||||| TCTAAACCTT AACATTTCAA TGTAATAGCA ACAGAAAGTA ATGCGGAAGA CTTAAACTCA 373 TTAATAAAAT CAATAACTAT TATTATTCAA CATCTATTAT TCCCCAAAAT CTGGAAGTCA 60548 |||||||||| ||||||||| ||||||| || |||||||||| | ||||||| |||||||||| TTAATAAAAT CAATAACTAC TATTATTAAA CATCTATTAT T-CCCAAAAC CTGGAAGTCA 432 TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA GTTTCTAAGA AGCT-AAAAA 60489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA GTTTCTAAGA AGCTAAAAAA 492 -TACATAAGA AGCTAGTCCA TGCCGGGAGT TCAAGGCATC AAGACATGAA GGAGAAGATC 60430 ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTACATAAGA AGCTAGTCCA TGCCGGAAGT TCAAGGCATC AAGACATGAA GGAGAAGATC 552 CAGTCCAAGC TAGAAGCGTT AGCTCACCCT GAAGATCCGG TGTGACGAAG ACTGGCTAGA 60370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CAGTCCAAGC TAGAAGCGTT AGCTCACCCT GAAGATCCGG TGTGACGAAG ACTGGCTTGA 612 ATTACCGTTG AGTTGAGGAC GACGGCACGT TTGTTGCACT CCACAAATAA CAAGAAGAAA 60310 |||| |||| ||| || || |||||||||| ||| |||||| ||||||||| |||||||||| GTTACTGTTG AGTCGAAGAT GACGGCACGT TTGCTGCACT CCACAAATAC CAAGAAGAAA 672 AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAA 60253 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||||| AACATAAAAG TAGGGGTCAG TACAAAACAC GGCTACTGAG TAGATATCAT CGGCCAA 729 hqPGS_C08HBa0027D09.1-_SGN-E351546- (60740 60253) ******************************************************************************** EST sequence 122 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 63037 to 59653): Exon 1 62167 62152 ( 16 n); cDNA 152 166 ( 15 n); score: 0.750 Intron 1 62151 60741 (1411 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 60740 60253 ( 488 n); cDNA 167 655 ( 489 n); score: 0.947 MATCH C08HBa0027D09.1- SGN-E356696- 0.947 504 0.769 C PGS_C08HBa0027D09.1-_SGN-E356696- (62167 62152,60740 60253) Alignment (genomic DNA sequence = upper lines): AATGCCATGA TTAGCAGCAT TGTGCATGTA ACAAATCTGC CTCGGAGAAG AGTTCTAAAA 62108 ||||| ||| || || AATGCTCTGA -TACCA.... .......... .......... .......... .......... 166 TGGTTTGAAG AAAGACGGTC TGAAGAAGGG GTTCCTGCTC ATCGACTTCC ATACCAACCA 62048 .......... .......... .......... .......... .......... .......... 166 TCCTCTATAT CTGAATAGTA CTTTCCTTGT AAATACCAGC TAAAAGAAGT AGTTTCTACA 61988 .......... .......... .......... .......... .......... .......... 166 TGTGGAACTG GGATACCAGA ATTATTTGAT ACGGTCACAG CTTCCTTTGG CTATTCGTCT 61928 .......... .......... .......... .......... .......... .......... 166 TACTGAAGCT ATAACAATAG CAATATCCTC TGTAAGGAAA AGACGGTGAT CAACAAAAAG 61868 .......... .......... .......... .......... .......... .......... 166 AAATGAACAT CTTTACAGCT TTTGTCTGTT CCTATCTTCT TTAGCTCCAT TGAGTCTAAC 61808 .......... .......... .......... .......... .......... .......... 166 TATGTATACA TTTTTTCTTA CATTCCAGCA TACTTCGTTA ATAAAAGGGA TATTGTAATA 61748 .......... .......... .......... .......... .......... .......... 166 ATATAATTAA ACATGGTGAC CTAAGTATTT TGAATTTCAA TGTAATAGGC AGTAAAAATA 61688 .......... .......... .......... .......... .......... .......... 166 AAGCTAAAAA TATAAAATAA AATTGTAATA GCCAGTAATA TAGATAGACG ATAGTAATGT 61628 .......... .......... .......... .......... .......... .......... 166 ATTTCATGTA TTAATCTTCT ATTTCATAAT AACTGTATCC TAATTTAATT ATTTAGTTTA 61568 .......... .......... .......... .......... .......... .......... 166 TAAAATGAAA AGAATTTTAT TATATATTTC TTTTTCTAAT TTAGTATTAA TAACTATATA 61508 .......... .......... .......... .......... .......... .......... 166 AAATTTATAA TTAAATTTAA ATATTTATAA CATTATAAAA AAGAATGATA AAATAATAAA 61448 .......... .......... .......... .......... .......... .......... 166 TAAAATATAC ATGTTCTGAT TTCTATCTAG TAATATATAT AAAATATTTT CTCTTATTAT 61388 .......... .......... .......... .......... .......... .......... 166 ATAAGAGGGA GTGTGCACAA ATTGCAAGTG CCTCCCCGTC AACATGTCCG CTTGGCATAG 61328 .......... .......... .......... .......... .......... .......... 166 GGATCATTTG GGTATTTTGT AATTATTTTG CGAGAAATCT ATTGTACTTT GTGCTATTGA 61268 .......... .......... .......... .......... .......... .......... 166 TCATTTACTT CTCTCTTTTT TCTTTCATCA TTGCTTAATG AATTGGAGGA TTTGAAGTAA 61208 .......... .......... .......... .......... .......... .......... 166 TTCACATTTA TGTTAGCAGT AAGTCGAAAA ATTAATATCC ACACATATTT AAGAGGATAA 61148 .......... .......... .......... .......... .......... .......... 166 ATATCAAGTT GTAATTATAC TCATTAAAAA TAAATGACTT ATAGCATATT ATTATCATCT 61088 .......... .......... .......... .......... .......... .......... 166 TACAGTACAT CAATAAATAA TATATTAATT AAAAATATTT AAAAATAAAC TATTTATAGC 61028 .......... .......... .......... .......... .......... .......... 166 ATATTATTAT CAAATTATAG CATATTAACT AACAATATAT TAATAAAAAA TTTATATTAT 60968 .......... .......... .......... .......... .......... .......... 166 TATTTAAGTA CTAATTATTA TGTTTAAATA ATCAGTTTCA TTTATTCACT TACCTTTTAT 60908 .......... .......... .......... .......... .......... .......... 166 CAACAAAACC TTTTAAATTA TTACTGATTA ATCAATTACC TTTTAAAGTT TTTAATATAA 60848 .......... .......... .......... .......... .......... .......... 166 ATAATAAATT ATTAAATATT AATCAATGAC CTTTTAAAGT TTTTAATATA AATAATAAAT 60788 .......... .......... .......... .......... .......... .......... 166 TATTAAATAT TAATCATTTA CCTTTTAATA TATTTAATAT CAATAATAAA TTTGTCACGA 60728 | |||||||||| .......... .......... .......... .......... .......AGT TTTGTCACGA 179 CCCAAATCCG GGCCGCGACT GGCACCCACA CTTACGCTCC TATGTGAGCG AACCAACCAA 60668 |||||||||| |||||| ||| |||||||||| ||||| ||| |||||||||| |||||||||| CCCAAATCCG GGCCGCCACT GGCACCCACA CTTACCCTCN TATGTGAGCG AACCAACCAA 239 TCTAAACCTT AACATTTCAA GGTAATATCA ACATAAAGTA ATGCGGAAGA CTTAAACTCA 60608 |||||||||| |||||||||| |||||| || ||| |||||| |||||||||| |||||||||| TCTAAACCTT AACATTTCAA TGTAATAGCA ACAGAAAGTA ATGCGGAAGA CTTAAACTCA 299 TTAATAAAAT CAATAACTAT TATTATTCAA CATCTATTAT TCCCCAAAAT CTGGAAGTCA 60548 |||||||||| ||||||||| ||||||| || |||||||||| | ||||||| |||||||||| TTAATAAAAT CAATAACTAC TATTATTAAA CATCTATTAT T-CCCAAAAC CTGGAAGTCA 358 TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA GTTTCTAAGA AGCT-AAAAA 60489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA GTTTCTAAGA AGCTAAAAAA 418 -TACATAAGA AGCTAGTCCA TGCCGGGAGT TCAAGGCATC AAGACATGAA GGAGAAGATC 60430 ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTACATAAGA AGCTAGTCCA TGCCGGAAGT TCAAGGCATC AAGACATGAA GGAGAAGATC 478 CAGTCCAAGC TAGAAGCGTT AGCTCACCCT GAAGATCCGG TGTGACGAAG ACTGGCTAGA 60370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CAGTCCAAGC TAGAAGCGTT AGCTCACCCT GAAGATCCGG TGTGACGAAG ACTGGCTTGA 538 ATTACCGTTG AGTTGAGGAC GACGGCACGT TTGTTGCACT CCACAAATAA CAAGAAGAAA 60310 |||| |||| ||| || || |||||||||| ||| |||||| |||||||||| |||||||||| GTTACTGTTG AGTCGAAGAT GACGGCACGT TTGCTGCACT CCACAAATAA CAAGAAGAAA 598 AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAA 60253 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||||| AACATAAAAG TAGGGGTCAG TACAAAACAC GGCTACTGAG TAGATATCAT CGGCCAA 655 hqPGS_C08HBa0027D09.1-_SGN-E356696- (60740 60253) ******************************************************************************** EST sequence 177 +strand 434 n (File: SGN-E222578+) 1 TTTTTTTTTT TTTTTTTTTA ATAAAAACCA ATTCAATAAC TATCAATATT CAACATCTAT 61 TATTCCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 121 GAGTTTCTAA AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAGGTT CAAGGCATCA 181 AGACATGAAG GAGAAGATCC AGTCCAAGCT AGACGCGTTA GCTCACCCTG AAGATCCGGT 241 GTGACGAAGA CTGGCTTGAG TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC 301 CACAACTTTC TAGATGGGGA CTTTCTTCAA GGCTTCGAGA TGGAAACTTG CTTGCAGAGC 361 TTCGAGTGTT ACCAGCTTCA AGATGGAGTT TCAGTGATGA GGCTTGCTAG TCTCGAGTTT 421 TTTTTTTTTT TTTT Predicted gene structure (within gDNA segment 61644 to 57983): Exon 1 60598 60324 ( 275 n); cDNA 33 305 ( 273 n); score: 0.945 PPA cDNA 19 1 MATCH C08HBa0027D09.1- SGN-E222578+ 0.945 275 0.634 C PGS_C08HBa0027D09.1-_SGN-E222578+ (60598 60324) Alignment (genomic DNA sequence = upper lines): TCAATAACTA TTATTATTCA ACATCTATTA TTCCCCAAAA TCTGGAAGTC ATCATCACAA 60539 |||||||||| | | |||||| |||||||||| || ||||||| ||||||||| |||||||||| TCAATAACTA TCAATATTCA ACATCTATTA TT-CCCAAAA CCTGGAAGTC ATCATCACAA 91 GAACATCTAC TTTAAACTAC TAATTCTAAG AGTTTCTAAG AAGCTAAAAA TACATAAGAA 60479 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAACATCTAC TTTAAACTAC TAATTCTAAG AGTTTCTAA- AAGCTAAAAA TACATAAGAA 150 GCTAGTCCAT GCCGGGAGTT CAAGGCATCA AGACATGAAG GAGAAGATCC AGTCCAAGCT 60419 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAGTCCAT GCCGGAGGTT CAAGGCATCA AGACATGAAG GAGAAGATCC AGTCCAAGCT 210 AGAAGCGTTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTAGAA TTACCGTTGA 60359 ||| |||||| |||||||||| |||||||||| |||||||||| |||||| || |||| ||||| AGACGCGTTA GCTCACCCTG AAGATCCGGT GTGACGAAGA CTGGCTTGAG TTACTGTTGA 270 GTTGAGGACG ACGGCACGTT TGTTGCACTC CACAA 60324 || || || | |||||||||| || ||||||| ||||| GTCGAAGATG ACGGCACGTT TGCTGCACTC CACAA 305 hqPGS_C08HBa0027D09.1-_SGN-E222578+ (60598 60324) ******************************************************************************** EST sequence 313 +strand 710 n (File: SGN-E392027+) 1 CCACAGCCCC AGTGGCTGGC TCAGTCGCAC CCTGTCCCGC CGGTGCTGGT GTTGATGCTG 61 GCGTAGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 121 ATTTGTATCA CCTAGATACC AATTGGACCC AAGTAATAGC ACGAAAGAAG AAAGAATGGA 181 ATTTTCCAAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAG GCATCCCCCT ACCGTTCCTT 241 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 301 AGTTTGTCAC GACCAAAACC GGGTTGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC 361 GAACCAACCA ATCTAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA 421 CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC 481 CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA ACTAAGAGTA 541 GTCTAAAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 601 TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 661 TAAGACTGGC TTGAATTACT GTTGAGTTGA ACACGATGGC ACGTTTGCTG Predicted gene structure (within gDNA segment 64563 to 59023): Exon 1 62167 62159 ( 9 n); cDNA 286 294 ( 9 n); score: 0.778 Intron 1 62158 60746 (1413 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.86) Exon 2 60745 60334 ( 412 n); cDNA 295 710 ( 416 n); score: 0.841 MATCH C08HBa0027D09.1- SGN-E392027+ 0.841 421 0.593 C PGS_C08HBa0027D09.1-_SGN-E392027+ (62167 62159,60745 60334) Alignment (genomic DNA sequence = upper lines): AATGCCATGA TTAGCAGCAT TGTGCATGTA ACAAATCTGC CTCGGAGAAG AGTTCTAAAA 62108 ||||| || AATGCTCTG. .......... .......... .......... .......... .......... 294 TGGTTTGAAG AAAGACGGTC TGAAGAAGGG GTTCCTGCTC ATCGACTTCC ATACCAACCA 62048 .......... .......... .......... .......... .......... .......... 294 TCCTCTATAT CTGAATAGTA CTTTCCTTGT AAATACCAGC TAAAAGAAGT AGTTTCTACA 61988 .......... .......... .......... .......... .......... .......... 294 TGTGGAACTG GGATACCAGA ATTATTTGAT ACGGTCACAG CTTCCTTTGG CTATTCGTCT 61928 .......... .......... .......... .......... .......... .......... 294 TACTGAAGCT ATAACAATAG CAATATCCTC TGTAAGGAAA AGACGGTGAT CAACAAAAAG 61868 .......... .......... .......... .......... .......... .......... 294 AAATGAACAT CTTTACAGCT TTTGTCTGTT CCTATCTTCT TTAGCTCCAT TGAGTCTAAC 61808 .......... .......... .......... .......... .......... .......... 294 TATGTATACA TTTTTTCTTA CATTCCAGCA TACTTCGTTA ATAAAAGGGA TATTGTAATA 61748 .......... .......... .......... .......... .......... .......... 294 ATATAATTAA ACATGGTGAC CTAAGTATTT TGAATTTCAA TGTAATAGGC AGTAAAAATA 61688 .......... .......... .......... .......... .......... .......... 294 AAGCTAAAAA TATAAAATAA AATTGTAATA GCCAGTAATA TAGATAGACG ATAGTAATGT 61628 .......... .......... .......... .......... .......... .......... 294 ATTTCATGTA TTAATCTTCT ATTTCATAAT AACTGTATCC TAATTTAATT ATTTAGTTTA 61568 .......... .......... .......... .......... .......... .......... 294 TAAAATGAAA AGAATTTTAT TATATATTTC TTTTTCTAAT TTAGTATTAA TAACTATATA 61508 .......... .......... .......... .......... .......... .......... 294 AAATTTATAA TTAAATTTAA ATATTTATAA CATTATAAAA AAGAATGATA AAATAATAAA 61448 .......... .......... .......... .......... .......... .......... 294 TAAAATATAC ATGTTCTGAT TTCTATCTAG TAATATATAT AAAATATTTT CTCTTATTAT 61388 .......... .......... .......... .......... .......... .......... 294 ATAAGAGGGA GTGTGCACAA ATTGCAAGTG CCTCCCCGTC AACATGTCCG CTTGGCATAG 61328 .......... .......... .......... .......... .......... .......... 294 GGATCATTTG GGTATTTTGT AATTATTTTG CGAGAAATCT ATTGTACTTT GTGCTATTGA 61268 .......... .......... .......... .......... .......... .......... 294 TCATTTACTT CTCTCTTTTT TCTTTCATCA TTGCTTAATG AATTGGAGGA TTTGAAGTAA 61208 .......... .......... .......... .......... .......... .......... 294 TTCACATTTA TGTTAGCAGT AAGTCGAAAA ATTAATATCC ACACATATTT AAGAGGATAA 61148 .......... .......... .......... .......... .......... .......... 294 ATATCAAGTT GTAATTATAC TCATTAAAAA TAAATGACTT ATAGCATATT ATTATCATCT 61088 .......... .......... .......... .......... .......... .......... 294 TACAGTACAT CAATAAATAA TATATTAATT AAAAATATTT AAAAATAAAC TATTTATAGC 61028 .......... .......... .......... .......... .......... .......... 294 ATATTATTAT CAAATTATAG CATATTAACT AACAATATAT TAATAAAAAA TTTATATTAT 60968 .......... .......... .......... .......... .......... .......... 294 TATTTAAGTA CTAATTATTA TGTTTAAATA ATCAGTTTCA TTTATTCACT TACCTTTTAT 60908 .......... .......... .......... .......... .......... .......... 294 CAACAAAACC TTTTAAATTA TTACTGATTA ATCAATTACC TTTTAAAGTT TTTAATATAA 60848 .......... .......... .......... .......... .......... .......... 294 ATAATAAATT ATTAAATATT AATCAATGAC CTTTTAAAGT TTTTAATATA AATAATAAAT 60788 .......... .......... .......... .......... .......... .......... 294 TATTAAATAT TAATCATTTA CCTTTTAATA TATTTAATAT CAATAATAAA TTTGTCACGA 60728 ||| || |||||||||| .......... .......... .......... .......... ..ATACCAAG TTTGTCACGA 312 CCCAAATCCG GGCCGCGACT GGCACCCACA CTTACGCTCC TATGTGAGCG AACCAACCAA 60668 || ||| ||| || |||||| |||||||||| ||||| |||| |||||||||| |||||||||| CCAAAA-CCG GGTTGCGACT GGCACCCACA CTTACCCTCC TATGTGAGCG AACCAACCAA 371 TCTAAACCTT AACATTTCAA GGTAATATCA ACATAAAGTA ATGCGGAAGA CTTAAACTCA 60608 ||| |||||| |||||||||| |||||||| ||| |||||| ||| |||||| |||||||||| TCT-AACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA CTTAAACTCA 430 TT-AAT--A- A--AA-TCAA TAACTATTAT TATTCAACAT CTATTATTCC CCAAAATCTG 60555 || ||| | | || ||| ||||| || ||||||||| |||||||||| |||||||||| TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC CCAAAATCTG 490 GAAGTCATCA TCACAAGAAC ATCTAC-TTT AAACTACTAA TTCTAAGAGT -TTCTAAGAA 60497 |||||||||| ||||||||| |||||| | ||| ||||| |||||||| ||||| || GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA -ACTAAGAGT AGTCTAA-AA 548 GCTAAAAATA CATAAGAAGC TAGTCCATGC CGGGAGTTCA AGGCATCAAG ACATGAAGGA 60437 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| || ||||| | GCTAAAAATA CATAAGAAGC TAGTCCATGC CGGAAGTTCA AGGCATCAAG ACTTGAAGAA 608 GAAGATCCAG TCCAAGCTAG AAGCGTTAGC TCACCCTGAA GATCCGGTGT GACGAAGACT 60377 |||||||||| |||||||||| |||| ||||| |||||||||| |||| ||| | |||||| GAAGATCCAG TCCAAGCTAG AAGCATTAGC TCACCCTGAA TTTCCGATGT -AGTAAGACT 667 GGCTAGAATT ACCGTTGAGT TGAGGACGAC GGCACGTTTG TTG 60334 |||| ||||| || ||||||| ||| |||| |||||||||| || GGCTTGAATT ACTGTTGAGT TGAACACGAT GGCACGTTTG CTG 710 hqPGS_C08HBa0027D09.1-_SGN-E392027+ (60745 60334) ******************************************************************************** EST sequence 244 +strand 840 n (File: SGN-E542084+) 1 TTTTTTTTTT TAGGGGAAAA TTTCTTACTT CTATAAATGT CACGACCCAA ATCGGATCGC 61 GACTGGCACC CACACTTACC CTGCTATGTG AGCGAACCAA CCAATCCAAA CCTTAACATT 121 TCAATGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTTATTAATG AAAACCAATT 181 CAATAACTAT TATTTCCCAA AATCTGGAAG TCATCATCAT AAGAACATCT ACTTCAAATT 241 ACTAAATCTA AGAGTTTCTA AGAAGCTAAA AAATACATAA AAGCTAGTCC ATGCCGGAAC 301 TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAT CTAGAAAGCA TTAGCTCACC 361 CTGATATCCG AAGTAATGAA GACTGGCTAG AGTTACTGTT GAGTCGAAGA TGACGGCACG 421 TTTGCTAAAA TCAGTGGACG GAGGAGAAGG GAAAGCACAC CGGGAATGAG AAGAAGCTGA 481 AGGAGGAACC AAAGAGGAAT CCCATTGCAA AGTAAATGAG AGTGTAAGCT AGCAGACGCG 541 ATGGAAGAGC TTACGCAGAA ATAACACTCT CATTTGGTGA TTTAGTTTGG AGATCATCTG 601 AGACCTTCGT GTTGGACAAC ATCATCCATG AAGATGTCAT TAGAAAAGTT AGATGCTTTA 661 TATACATGTT GATAGTTCCT GACTACTCTA TTTCTTTTTC AGAAAGCCCC GAAATTTCTC 721 AGATGATAAA TGCTGTCTGT TTTGGAAAAC CATCTCTATG CAAAGATGAT GTTTGCTGCA 781 TTGAGGTGTC AATATTGGGA ATTTCAAGAA AATTATGCCT TGTAGAATAT GTACAGCAAC Predicted gene structure (within gDNA segment 62118 to 54424): Exon 1 60735 60337 ( 399 n); cDNA 38 424 ( 387 n); score: 0.870 PPA cDNA 11 1 MATCH C08HBa0027D09.1- SGN-E542084+ 0.870 399 0.475 C PGS_C08HBa0027D09.1-_SGN-E542084+ (60735 60337) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCCGGG CCGCGACTGG CACCCACACT TACGCTCCTA TGTGAGCGAA 60676 |||||||||| ||||| ||| ||||||||| |||||||||| ||| || ||| |||||||||| TGTCACGACC CAAAT-CGGA TCGCGACTGG CACCCACACT TACCCTGCTA TGTGAGCGAA 96 CCAACCAATC TAAACCTTAA CATTTCAAGG TAATATCAAC ATAAAGTAAT GCGGAAGACT 60616 |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| CCAACCAATC CAAACCTTAA CATTTCAATG TAATATCAAC ATAAAGTAAT GCGGAAGACT 156 TAAACTCATT AATAAAATCA ATAACTATTA TTATTCAACA TCTATTATTC CCCAAAATCT 60556 |||||| ||| ||| ||| | || | | | | | ||| ||||||| |||||||||| TAAACTTATT AATGAAA--A CCAA-T-TCA --A-T-AAC- --TATTATTT CCCAAAATCT 205 GGAAGTCATC ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG 60496 |||||||||| |||| ||||| ||||||||| ||| |||||| ||||||||| |||||||||| GGAAGTCATC ATCATAAGAA CATCTACTTC AAATTACTAA ATCTAAGAGT TTCTAAGAAG 265 CT-AAAAATA CATAAGAAGC TAGTCCATGC CGGGAGTTCA AGGCATCAAG ACATGAAGGA 60437 || ||||||| ||||| |||| |||||||||| ||| | |||| || ||||||| |||||||| CTAAAAAATA CATAA-AAGC TAGTCCATGC CGGAACTTCA AGACATCAAG ACATGAAGAG 324 GAAGATCCAG TCCAAGCTAG -AAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC 60378 |||||||||| ||||| |||| |||| |||| ||||||||| | ||||| | | | |||||| GAAGATCCAG TCCAATCTAG AAAGCATTAG CTCACCCTG- ATATCCGAAG TAATGAAGAC 383 TGGCTAGAAT TACCGTTGAG TTGAGGACGA CGGCACGTTT G 60337 |||||||| | ||| |||||| | || || || |||||||||| | TGGCTAGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT G 424 hqPGS_C08HBa0027D09.1-_SGN-E542084+ (60735 60337) ******************************************************************************** EST sequence 174 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 61775 to 56823): Exon 1 60735 60346 ( 390 n); cDNA 45 438 ( 394 n); score: 0.810 PPA cDNA 13 1 MATCH C08HBa0027D09.1- SGN-E370357+ 0.810 390 0.574 C PGS_C08HBa0027D09.1-_SGN-E370357+ (60735 60346) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCCGGG CCGCGACTGG CACCCACACT TACGCTCCTA TGTGAGCGAA 60676 |||||||||| ||||| || | |||| | ||| |||||||||| ||| |||||| |||||||||| TGTCACGACC CAAAT-CGAG CCGCAAGTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 103 CCAACCAATC TAAACCTTAA CATTTCAAGG TAATATCAAC ATAAAGTAAT GCGGAAGACT 60616 ||||||||| ||| || |||||||| |||| | ||| |||| |||||||||| CCAACCAATA CAAAATCCAA CATTTCAATA TAATGACGGA ATA---TAAT GCGGAAGACT 160 TAAACTCATT AAT-AAAATC AA-TAACT-A --T-T-ATTA TTCAACATCT ATTA-T-TCC 60565 |||||||||| ||| |||||| || ||| | | | | | | |||||| || |||| | ||| TAAACTCATT AATGAAAATC AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC 220 CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTA-CTTT AAACTACTAA TTCTAAGAGT 60506 |||||||||| |||||||||| |||||||||| ||||| | | ||| |||||| |||||||||| CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT 280 TTCTAAGAAG CTAAAAATAC ATAAGAAGCT AGTCCATGCC GGGAGTTCAA GGCATCAAGA 60446 |||| ||| || | |||| ||| ||||| |||||||||| || | ||||| |||||||||| ATCTAGAAAG CT-AGAATAA CTAAAAAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA 339 CATGAAGGAG AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACCCTGAAG ATCCGGTGTG 60386 ||||||| || |||||||||| |||||||||| |||||||||| ||| ||||| ||||||| | CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACACTGAA- ATCCGGTATA 398 ACGAAGACTG GCTAGAATTA CCGTTGAGTT GAGGACGACG 60346 | |||||||| |||||| || | |||||||| || ||||||| ATGAAGACTG GCTAGAGTTG CGGTTGAGTT GAAGACGACG 438 hqPGS_C08HBa0027D09.1-_SGN-E370357+ (60735 60346) ******************************************************************************** EST sequence 32 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 61527 to 58857): Exon 1 60567 60346 ( 222 n); cDNA 36 255 ( 220 n); score: 0.919 PPA cDNA 13 1 MATCH C08HBa0027D09.1- SGN-E373117- 0.919 222 0.742 C PGS_C08HBa0027D09.1-_SGN-E373117- (60567 60346) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA 60508 |||||||||| |||||||||| |||||||||| |||||||||| | ||| |||| || ||||||| TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TCAAATTACT AAATCTAAGA 95 GTTTCTAAGA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGGAGTTC AAGGCATCAA 60448 || ||||||| ||||| |||| |||||| || |||||||||| |||| | ||| |||||||||| GTATCTAAGA AGCTA-AAAT ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 154 GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG 60388 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||| || GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA A-ATCCGATG 213 TGACGAAGAC TGGCTAGAAT TACCGTTGAG TTGAGGACGA CG 60346 | | |||||| |||||||| | | | |||||| |||| ||||| || TAATGAAGAC TGGCTAGAGT TGCGGTTGAG TTGAAGACGA CG 255 hqPGS_C08HBa0027D09.1-_SGN-E373117- (60567 60346) ******************************************************************************** EST sequence 217 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 61507 to 58837): Exon 1 60567 60346 ( 222 n); cDNA 35 254 ( 220 n); score: 0.919 PPA cDNA 12 1 MATCH C08HBa0027D09.1- SGN-E373116+ 0.919 222 0.742 C PGS_C08HBa0027D09.1-_SGN-E373116+ (60567 60346) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TTAAACTACT AATTCTAAGA 60508 |||||||||| |||||||||| |||||||||| |||||||||| | ||| |||| || ||||||| TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTACT TCAAATTACT AAATCTAAGA 94 GTTTCTAAGA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGGAGTTC AAGGCATCAA 60448 || ||||||| |||||| ||| |||||| || |||||||||| |||| | ||| |||||||||| GTATCTAAGA AGCTAA-AAT ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 153 GACATGAAGG AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG 60388 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||| || GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA A-ATCCGATG 212 TGACGAAGAC TGGCTAGAAT TACCGTTGAG TTGAGGACGA CG 60346 | | |||||| |||||||| | | | |||||| |||| ||||| || TAATGAAGAC TGGCTAGAGT TGCGGTTGAG TTGAAGACGA CG 254 hqPGS_C08HBa0027D09.1-_SGN-E373116+ (60567 60346) ******************************************************************************** EST sequence 329 +strand 265 n (File: SGN-E216150+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAATCAA TAATCAACTT GTATAACTCA AAACTTATCA 61 TTCCCCAAAA TCTGGAAGTC ATCATCACCA GAGCCTCTAT CATAAAATTA CTAAACTAAG 121 AGTATTCTAA GAAGCTAAAA ATACATACGA AGCTAGTCCA TGCCGGAAGT TCAAGGCATC 181 AAGACTTGAA GAAGAAGATC CAGTCAAACC TAGAAGCATT AGCTCACCCT GAATTTCCGA 241 TGTAGTAGGA CTGGCTTGAG TTACT Predicted gene structure (within gDNA segment 62345 to 59035): Exon 1 60573 60365 ( 209 n); cDNA 56 264 ( 209 n); score: 0.856 PPA cDNA 18 1 MATCH C08HBa0027D09.1- SGN-E216150+ 0.856 209 0.789 C PGS_C08HBa0027D09.1-_SGN-E216150+ (60573 60365) Alignment (genomic DNA sequence = upper lines): TATTATTCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTA-CTTTA AACTACTAAT 60515 ||| |||||| |||||||||| |||||||||| ||| ||| | |||| | | | || |||||| TATCATTCCC CAAAATCTGG AAGTCATCAT CACCAGAGCC TCTATCATAA AATTACTAA- 114 TCTAAGAGT- TTCTAAGAAG CTAAAAATAC ATAAGAAGCT AGTCCATGCC GGGAGTTCAA 60456 |||||||| |||||||||| |||||||||| ||| |||||| |||||||||| || ||||||| ACTAAGAGTA TTCTAAGAAG CTAAAAATAC ATACGAAGCT AGTCCATGCC GGAAGTTCAA 174 GGCATCAAGA CATGAAGGAG AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACCCTGAAG 60396 |||||||||| | ||||| || |||||||||| | || ||||| ||| |||||| ||||||||| GGCATCAAGA CTTGAAGAAG AAGATCCAGT CAAACCTAGA AGCATTAGCT CACCCTGAAT 234 ATCCGGTGTG ACGAAGACTG GCTAGAATTA C 60365 |||| ||| | | ||||| ||| || ||| | TTCCGATGT- AGTAGGACTG GCTTGAGTTA C 264 hqPGS_C08HBa0027D09.1-_SGN-E216150+ (60573 60365) ******************************************************************************** EST sequence 78 -strand 219 n (File: SGN-E298638-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 61 ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA Predicted gene structure (within gDNA segment 62309 to 59657): Exon 1 61611 61594 ( 18 n); cDNA 3 20 ( 18 n); score: 0.722 Intron 1 61593 60581 (1013 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.85) Exon 2 60580 60382 ( 199 n); cDNA 21 219 ( 199 n); score: 0.889 MATCH C08HBa0027D09.1- SGN-E298638- 0.889 217 0.991 C PGS_C08HBa0027D09.1-_SGN-E298638- (61611 61594,60580 60382) Alignment (genomic DNA sequence = upper lines): TTCTATTTCA TAATAACTGT ATCCTAATTT AATTATTTAG TTTATAAAAT GAAAAGAATT 61552 || | ||| ||| |||| TTTTTTTTTC TAAAAACT.. .......... .......... .......... .......... 20 TTATTATATA TTTCTTTTTC TAATTTAGTA TTAATAACTA TATAAAATTT ATAATTAAAT 61492 .......... .......... .......... .......... .......... .......... 20 TTAAATATTT ATAACATTAT AAAAAAGAAT GATAAAATAA TAAATAAAAT ATACATGTTC 61432 .......... .......... .......... .......... .......... .......... 20 TGATTTCTAT CTAGTAATAT ATATAAAATA TTTTCTCTTA TTATATAAGA GGGAGTGTGC 61372 .......... .......... .......... .......... .......... .......... 20 ACAAATTGCA AGTGCCTCCC CGTCAACATG TCCGCTTGGC ATAGGGATCA TTTGGGTATT 61312 .......... .......... .......... .......... .......... .......... 20 TTGTAATTAT TTTGCGAGAA ATCTATTGTA CTTTGTGCTA TTGATCATTT ACTTCTCTCT 61252 .......... .......... .......... .......... .......... .......... 20 TTTTTCTTTC ATCATTGCTT AATGAATTGG AGGATTTGAA GTAATTCACA TTTATGTTAG 61192 .......... .......... .......... .......... .......... .......... 20 CAGTAAGTCG AAAAATTAAT ATCCACACAT ATTTAAGAGG ATAAATATCA AGTTGTAATT 61132 .......... .......... .......... .......... .......... .......... 20 ATACTCATTA AAAATAAATG ACTTATAGCA TATTATTATC ATCTTACAGT ACATCAATAA 61072 .......... .......... .......... .......... .......... .......... 20 ATAATATATT AATTAAAAAT ATTTAAAAAT AAACTATTTA TAGCATATTA TTATCAAATT 61012 .......... .......... .......... .......... .......... .......... 20 ATAGCATATT AACTAACAAT ATATTAATAA AAAATTTATA TTATTATTTA AGTACTAATT 60952 .......... .......... .......... .......... .......... .......... 20 ATTATGTTTA AATAATCAGT TTCATTTATT CACTTACCTT TTATCAACAA AACCTTTTAA 60892 .......... .......... .......... .......... .......... .......... 20 ATTATTACTG ATTAATCAAT TACCTTTTAA AGTTTTTAAT ATAAATAATA AATTATTAAA 60832 .......... .......... .......... .......... .......... .......... 20 TATTAATCAA TGACCTTTTA AAGTTTTTAA TATAAATAAT AAATTATTAA ATATTAATCA 60772 .......... .......... .......... .......... .......... .......... 20 TTTACCTTTT AATATATTTA ATATCAATAA TAAATTTGTC ACGACCCAAA TCCGGGCCGC 60712 .......... .......... .......... .......... .......... .......... 20 GACTGGCACC CACACTTACG CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 60652 .......... .......... .......... .......... .......... .......... 20 TCAAGGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 60592 .......... .......... .......... .......... .......... .......... 20 CTATTATTAT TCAACATCTA TTA-T-TCCC CAAAATCTGG AAGTCATCAT CACAAGAACA 60534 ||||| ||| ||| | |||| |||||||||| ||||||||| |||||||||| .......... .CAACAACTA TTATTATCCC CAAAATCTGG CAGTCATCAT CACAAGAACA 69 TCTACTTTAA ACTACTAATT CTAAGAGTTT CTAAGAAGCT AAAAATACAT AAGAAGCTAG 60474 | ||||| || | |||||| | |||||||| | |||||||||| |||| ||||| || |||||| TGTACTTCAA ATTACTAAAT CTAAGAGTAT CTAAGAAGCT AAAA-TACAT AAACAGCTAG 128 TCCATGCCGG GAGTTCAAGG CATCAAGACA TGAAGGAGAA GATCCAGTCC AAGCTAGAAG 60414 |||||||||| | ||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TCCATGCCGG AACTTCAAGG CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG 188 CGTTAGCTCA CCCTGAAGAT CCGGTGTGAC GA 60382 |||||||||| ||||||| || ||| ||| | || CGTTAGCTCA CCCTGAA-AT CCGATGTAAT GA 219 hqPGS_C08HBa0027D09.1-_SGN-E298638- (60580 60382) ******************************************************************************** EST sequence 50 -strand 402 n (File: SGN-E352844-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CC Predicted gene structure (within gDNA segment 61535 to 57673): Exon 1 60583 60413 ( 171 n); cDNA 19 188 ( 170 n); score: 0.912 MATCH C08HBa0027D09.1- SGN-E352844- 0.912 171 0.425 C PGS_C08HBa0027D09.1-_SGN-E352844- (60583 60413) Alignment (genomic DNA sequence = upper lines): ATTCAACATC TATTATTCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTTAA 60524 |||||| | | ||||||| || |||||||||| |||| ||||| |||||||||| ||||||| | ATTCAATAAC TATTATTTCC CAAAATCTGG AAGTTATCAT CACAAGAACA TCTACTTCGA 78 ACTACTAATT CTAAGAGTTT CTAAGAAGCT AAAAATACAT AAGAAGCTAG TCCATGCCGG 60464 | |||||| | |||||||| | |||||||||| | |||||||| || |||||| |||||||||| ATTACTAAAT CTAAGAGTAT CTAAGAAGCT A-AAATACAT AAACAGCTAG TCCATGCCGG 137 GAGTTCAAGG CATCAAGACA TGAAGGAGAA GATCCAGTCC AAGCTAGAAG C 60413 | ||||||| |||||||||| ||||| |||| |||||||||| |||||||||| | AACTTCAAGG CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG C 188 hqPGS_C08HBa0027D09.1-_SGN-E352844- (60583 60413) ******************************************************************************** EST sequence 103 -strand 666 n (File: SGN-E368629-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTATAA AAACCAATTC AATAACTATT ATTTCCCAAA 61 ATCTGGAAGT TATCATCACA AGAACATCTA CTTCGAATTA CTAAATCTAG AAGTATCTAA 121 GAGCCTAAAA TACATAACAC AGTTAGTCCA TGCCGAAACT TCAAGGCATC AAGACATAAA 181 GAAGAAGATC CAGTCCAAGC TAGAAGCTTT GTTTTATCGA AAAAAGGTGA TTTTTCGAAA 241 AGAGTTTGTT TTATTTTAAA GTATTTTTCG ACTTTAGGAG TCGCCACTTA ATTTTTAAGA 301 AAAATCAAGA AAACTCATTC TCAAAACAAT TTAAACAGAA AAGTCGTTTT GAAAATATTT 361 TTTAGGATTC GGGATTCTTA TTAGCGTCTT AGGAAGGTGT TTAAGGCACC TAAGACACTC 421 CGTTAAATAC GGTTTTCCAA CGACTAACTT ATTTGATTAT TTTTATTTTT ACCCTTTGCA 481 AATTTATTTG AACTTTTATC ACGATTTACT TAGCCAAACT TTGCAAATTT GAGATATTAA 541 TCTTTTAAGA TTCCGTCTTA GTTAAACTTT CTAAGCCTTA ACTCTCTAAG CAGACTTTCA 601 AATTTTAAAC CTCTATCGTT TCAAAACTTC AATTTTTATT TTTTAGTTTC ATAAAGCAAA 661 AGGCGT Predicted gene structure (within gDNA segment 61715 to 55223): Exon 1 60583 60413 ( 171 n); cDNA 37 207 ( 171 n); score: 0.863 PPA cDNA 28 1 MATCH C08HBa0027D09.1- SGN-E368629- 0.863 171 0.257 C PGS_C08HBa0027D09.1-_SGN-E368629- (60583 60413) Alignment (genomic DNA sequence = upper lines): ATTCAACATC TATTATTCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTTAA 60524 |||||| | | ||||||| || |||||||||| |||| ||||| |||||||||| ||||||| | ATTCAATAAC TATTATTTCC CAAAATCTGG AAGTTATCAT CACAAGAACA TCTACTTCGA 96 ACTACTAATT CTAAGAGTTT CTAAGAAGCT AAAAATACAT AAGA-AGCTA GTCCATGCCG 60465 | |||||| | ||| ||| | |||||| || || ||||||| || | || || |||||||||| ATTACTAAAT CTAGAAGTAT CTAAGAGCCT AA-AATACAT AACACAGTTA GTCCATGCCG 155 GGAGTTCAAG GCATCAAGAC ATGAAGGAGA AGATCCAGTC CAAGCTAGAA GC 60413 | |||||| |||||||||| || ||| ||| |||||||||| |||||||||| || AAACTTCAAG GCATCAAGAC ATAAAGAAGA AGATCCAGTC CAAGCTAGAA GC 207 hqPGS_C08HBa0027D09.1-_SGN-E368629- (60583 60413) ******************************************************************************** EST sequence 95 -strand 620 n (File: SGN-E238551-) 1 CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 61 TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 121 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTGTTTTA TCGAAAAAAG 181 GTGATTTTTC GAAAAGAGTT TGTTTTATTT TAAAGTATTT TTCGACTTTA GGAGTCGCCA 241 CTTAATTTTT AAGAAAAATC AAGAAAACTC ATTCTCAAAA CAATTTAAAC AGAAAAGTCG 301 TTTTGAAAAT ATTTTTTAGG ATTCGGGATT CTTATTAGCG TCTTAGGAAG GTGTTTAAGG 361 CACCTAAGAC ACTCCGTTAA ATACGGTTTT CCAACGACTA ACTTATTTGA TTATTTTTAT 421 TTTTACCCTT TGCAAATTTA TTTGAACTTT TATCACGATT TACTTAGCCA AACTTTGCAA 481 ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA CTTTCTAAGC CTTAACTCTC 541 TAAGCAGACT TTCAAATTTT AAACCTCTAT CGTTTCAAAA CTTCAATTTT TATTTTTTAG 601 TTTCATAAAG CAAAAGGCGT Predicted gene structure (within gDNA segment 61265 to 55223): Exon 1 60574 60413 ( 162 n); cDNA 1 161 ( 161 n); score: 0.920 MATCH C08HBa0027D09.1- SGN-E238551- 0.920 162 0.261 C PGS_C08HBa0027D09.1-_SGN-E238551- (60574 60413) Alignment (genomic DNA sequence = upper lines): CTATTATTCC CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTACTTTA AACTACTAAT 60515 |||||||| | |||||||||| ||||| |||| |||||||||| |||||||| || |||||| CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 60 TCTAAGAGTT TCTAAGAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GGAGTTCAAG 60455 ||||||||| |||||||||| ||||| |||| ||| ||||| |||||||||| | | |||||| TCTAAGAGTA TCTAAGAAGC TAAAA-TACA TAAACAGCTA GTCCATGCCG GAACTTCAAG 119 GCATCAAGAC ATGAAGGAGA AGATCCAGTC CAAGCTAGAA GC 60413 |||||||||| |||||| ||| |||||||||| |||||||||| || GCATCAAGAC ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GC 161 hqPGS_C08HBa0027D09.1-_SGN-E238551- (60574 60413) ******************************************************************************** EST sequence 15 -strand 691 n (File: SGN-E371390-) 1 ACCTGTTCCC AAAATGTTAG AGGCTGCAAG CAAACCCCTG GAGACTGTTC CCATCGAGAT 61 GAGTGATGCT GTGAAGCCAG ATGTTAAGGT GAAAACGCCA GTTCATGTAA TGCAAAGTAA 121 CTGGTCTGCT CAAAAGAGAC TAAAGAAAGT TCAATTGGAA ACCCTTGAAC AAGTTTATAG 181 ACGATCGAAG CGGCCCACTA ATGCCATGAT TAGCAGCATT GTGCATGTAA CAAATCTGCC 241 TCGGAGAAGA GTTCTAAAAT GGTTTGAAGA AAGACGGTCT GAAGAAGGGG TTCCTGCTCA 301 TCGACTTCCA TACCAACCAT CCTCTATATC TGAATAGTAC TTTCCTTGTA AATACCAGCT 361 AAAAGAAGTA GTTTCTACAT GTGGAACTGG GATACCAGAA TTATTTGATA CGGTCACAGC 421 TTCCTTTGGC TATTCGTCTT ACTGAAGCTA TAACAATAGC AATATCCTCT GTAAGGAAAA 481 GACGGTGATC AACAAAAAGA AATGAACATC TTTACAGCTT TTGTCTGTTC CTATCTTCTT 541 TAGCTCCATT GAGTCTAACT ATGTATACAT TTTTTCTTAC ATTCCAGCAT ACTTCGTTAA 601 TAAAAGGGAT ATTGTAATAA TATAATTAAA CATGGTGACC TAAGTATTTT GAATTTCAAT 661 GTAATAGGCA GTAAAAATAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 64408 to 60986): Exon 1 63690 63492 ( 199 n); cDNA 1 199 ( 199 n); score: 0.980 Intron 1 63491 62168 (1324 n); Pd: 0.998 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 62167 61678 ( 490 n); cDNA 200 689 ( 490 n); score: 0.994 MATCH C08HBa0027D09.1- SGN-E371390- 0.990 689 0.997 C PGS_C08HBa0027D09.1-_SGN-E371390- (63690 63492,62167 61678) Alignment (genomic DNA sequence = upper lines): ACCTGTTCCC AGAATGTTAG AGGCTGCAAG CAAACCCCTG GAGACTGTTC CCATCGAGAT 63631 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGTTCCC AAAATGTTAG AGGCTGCAAG CAAACCCCTG GAGACTGTTC CCATCGAGAT 60 GAGTGATGCT GTGAAGCCAG ATGCTAAGGT GGAAACGCCA GTTCATGTGA TGCAAAGTAA 63571 |||||||||| |||||||||| ||| |||||| | |||||||| |||||||| | |||||||||| GAGTGATGCT GTGAAGCCAG ATGTTAAGGT GAAAACGCCA GTTCATGTAA TGCAAAGTAA 120 CTGGTCTGCT CAAAAGAGAC TAAAGAAAGT TCAATTGGAA ACCCTTGAAC AAGTTTATAG 63511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTCTGCT CAAAAGAGAC TAAAGAAAGT TCAATTGGAA ACCCTTGAAC AAGTTTATAG 180 ACGATCGAAG CGGCCCACTG TGAGTCTCTT TACTTCTCTA TTTGTGTTTG ATGCCCTTTT 63451 |||||||||| ||||||||| ACGATCGAAG CGGCCCACT. .......... .......... .......... .......... 199 AGTCTGTTGG TAAATTTTCA TATCTGAATA CAGAGCTTCT GCATATTATT GCTTAATTCT 63391 .......... .......... .......... .......... .......... .......... 199 GCACTTGGAC TATGGGTCTT TGGTGTGAGT AAGTAGAAAA CATCCAATCT GAAATATCAT 63331 .......... .......... .......... .......... .......... .......... 199 CTAGTCTGGG ATATGAATAT AAGTGACTGA GGCTAGCAAC ATTGTGTGGT GGTTCTTTCC 63271 .......... .......... .......... .......... .......... .......... 199 ATCTTGGATC TTATGGACCA AGGATAATCT TGGATAAGTG AATCTGCTTT CTTGCTCTCG 63211 .......... .......... .......... .......... .......... .......... 199 ATATCCAAAT CTCAACATAT TTGTCCTCTC TGTTTCCCTT TTTATCTATG TTTGTTGTTT 63151 .......... .......... .......... .......... .......... .......... 199 TCTTGTTTAT CTTTATTCTG CATTTTCCTT ATTTCTTCGG GATGAGCATG GATTTGATGA 63091 .......... .......... .......... .......... .......... .......... 199 GAATATTAAG TTACCTGTTC AGTTTTTTTT TAAAAAAATA AAATATTACG ACAGATATGA 63031 .......... .......... .......... .......... .......... .......... 199 CCTATTCCGG TTATGTGTTC TACTCTAATA TCTTTGTAGT TGGTAGTTGA ATAGAAATTG 62971 .......... .......... .......... .......... .......... .......... 199 CCAAAAAAAA ATCAGGTGAA TTAAGTGGTT ACTGCAAACT GTATACCAAA AGTCAGGAGA 62911 .......... .......... .......... .......... .......... .......... 199 TTGAAGATAG TAATAACTTT AGTACTGTGT TGATAAATCT AAAAAATGAT GTCCTGGAAC 62851 .......... .......... .......... .......... .......... .......... 199 GGCAACCCAT TGCGATCAGC ACCTCTTATT GGTTTATGTA TGTGTTCAAT CAACATCATA 62791 .......... .......... .......... .......... .......... .......... 199 CCTTTCCTCC CTTCTATTCA CGGTTCAAAT GTGTCCTAGT TCCCCTATTA TTAGGAACCA 62731 .......... .......... .......... .......... .......... .......... 199 CCAAGTTAAA GTACTTGGAT CACATAATTG AACCCTATTA TCAAAATCCC AACTTATTTG 62671 .......... .......... .......... .......... .......... .......... 199 GGACTGAGGT GTTGTAGTTG TTGTGCATAA TTGAAGTTAT GCTTGTATTA CTAATTTCAG 62611 .......... .......... .......... .......... .......... .......... 199 GCACCAGATG ACTAGTTGTT TTTTTTTTCT CCATTTAAAA AATTGGATGT ATGGAGGGGA 62551 .......... .......... .......... .......... .......... .......... 199 TTCAATGACT AGTTTGAAGA GGTTGGATGT CAGGGTTCTT CTCGTTTGCT CTTTAAATTG 62491 .......... .......... .......... .......... .......... .......... 199 ATGATGTTTC TCTTTTCAAT GCACAATTGA CTGAATTAGT ATGTCGTACC TGTTTCTCTT 62431 .......... .......... .......... .......... .......... .......... 199 TTACATCCCG TGGTATCATT AATTGATATA ACTGGGGATA CTGATGATTT GTTTAGAAAA 62371 .......... .......... .......... .......... .......... .......... 199 CCCAGTCTGA GTTAGTAGGC ACTGCTAAAT CATTCTACTA TTGCACTTCA TGTGCGACTC 62311 .......... .......... .......... .......... .......... .......... 199 ATGACTCCTC ATATTGGTAT CTCCGAACTC TACAATTAAA TAGATGATAT GTGGCTTGCT 62251 .......... .......... .......... .......... .......... .......... 199 TGTTGATGTG GTTACATACA ATTGCTAAGT GTTGTACCTT TGATGACACA AAGAACATTG 62191 .......... .......... .......... .......... .......... .......... 199 TTATCGTTAT ACTCTTGATG CAGAATGCCA TGATTAGCAG CATTGTGCAT GTAACAAATC 62131 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...AATGCCA TGATTAGCAG CATTGTGCAT GTAACAAATC 236 TGCCTCGGAG AAGAGTTCTA AAATGGTTTG AAGAAAGACG GTCTGAAGAA GGGGTTCCTG 62071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCGGAG AAGAGTTCTA AAATGGTTTG AAGAAAGACG GTCTGAAGAA GGGGTTCCTG 296 CTCATCGACT TCCATACCAA CCATCCTCTA TATCTGAATA GTACTTTCCT TGTAAATACC 62011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATCGACT TCCATACCAA CCATCCTCTA TATCTGAATA GTACTTTCCT TGTAAATACC 356 AGCTAAAAGA AGTAGTTTCT ACATGTGGAA CTGGGATACC AGAATTATTT GATACGGTCA 61951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAAAAGA AGTAGTTTCT ACATGTGGAA CTGGGATACC AGAATTATTT GATACGGTCA 416 CAGCTTCCTT TGGCTATTCG TCTTACTGAA GCTATAACAA TAGCAATATC CTCTGTAAGG 61891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTCCTT TGGCTATTCG TCTTACTGAA GCTATAACAA TAGCAATATC CTCTGTAAGG 476 AAAAGACGGT GATCAACAAA AAGAAATGAA CATCTTTACA GCTTTTGTCT GTTCCTATCT 61831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGACGGT GATCAACAAA AAGAAATGAA CATCTTTACA GCTTTTGTCT GTTCCTATCT 536 TCTTTAGCTC CATTGAGTCT AACTATGTAT ACATTTTTTC TTACATTCCA GCATACTTCG 61771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTAGCTC CATTGAGTCT AACTATGTAT ACATTTTTTC TTACATTCCA GCATACTTCG 596 TTAATAAAAG GGATATTGTA ATAATATAAT TAAACATGGT GACCTAAGTA TTTTGAATTT 61711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATAAAAG GGATATTGTA ATAATATAAT TAAACATGGT GACCTAAGTA TTTTGAATTT 656 CAATGTAATA GGCAGTAAAA ATAAAGCTAA AAA 61678 |||||||||| |||||||||| ||||| || ||| CAATGTAATA GGCAGTAAAA ATAAAAAAAA AAA 689 hqPGS_C08HBa0027D09.1-_SGN-E371390- (63690 63492,62167 61678) ******************************************************************************** EST sequence 89 -strand 501 n (File: SGN-E319181-) 1 GCTAAAAGAA GTAGTTTCTA CATGTGGAAC TGGGATACCA GAATTATTTG ATACGGTCAC 61 AGCTTCCTTT GGCTATTCGT CTTACTGAAG CTATAACAAT AGCAATATCC TCTGTAAGGA 121 AAAGACGGTG ATCAACAAAA AGAAATGAAC ATCTTTACAG CTTTTGTCTG TTCCCATCTT 181 CTTTAGCTCC ATTGAGTCTA ACTATGTATA CATTTTTTCT TACATTCCAG CATACTTCGT 241 TAATAAAAGG GATATTGTAA TAATATAATT AAACATGGTG ACCTAAGTAT TTTGAATTTC 301 AATGTAATAG GCAGTAAAAA TAAAGCTAAA AATATAAAAT AAAATTGTAA TAGCCAGTAA 361 TATAGATAGA CGATAGTAAT GTATTTCATG TATTAATCTT CTATTTCATA ATAACTGTAT 421 CCTAATTTAA TTATTTAGTT TATAAAATGA AAAGAATTTT ATTCTTAACA AAAAAAAAAC 481 AAAACTCAAG GCTAGTTCTC T Predicted gene structure (within gDNA segment 62619 to 60567): Exon 1 62009 61547 ( 463 n); cDNA 1 463 ( 463 n); score: 0.998 PPA cDNA 467 479 MATCH C08HBa0027D09.1- SGN-E319181- 0.998 463 0.924 C PGS_C08HBa0027D09.1-_SGN-E319181- (62009 61547) Alignment (genomic DNA sequence = upper lines): GCTAAAAGAA GTAGTTTCTA CATGTGGAAC TGGGATACCA GAATTATTTG ATACGGTCAC 61950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAAAAGAA GTAGTTTCTA CATGTGGAAC TGGGATACCA GAATTATTTG ATACGGTCAC 60 AGCTTCCTTT GGCTATTCGT CTTACTGAAG CTATAACAAT AGCAATATCC TCTGTAAGGA 61890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCCTTT GGCTATTCGT CTTACTGAAG CTATAACAAT AGCAATATCC TCTGTAAGGA 120 AAAGACGGTG ATCAACAAAA AGAAATGAAC ATCTTTACAG CTTTTGTCTG TTCCTATCTT 61830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AAAGACGGTG ATCAACAAAA AGAAATGAAC ATCTTTACAG CTTTTGTCTG TTCCCATCTT 180 CTTTAGCTCC ATTGAGTCTA ACTATGTATA CATTTTTTCT TACATTCCAG CATACTTCGT 61770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAGCTCC ATTGAGTCTA ACTATGTATA CATTTTTTCT TACATTCCAG CATACTTCGT 240 TAATAAAAGG GATATTGTAA TAATATAATT AAACATGGTG ACCTAAGTAT TTTGAATTTC 61710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAAAGG GATATTGTAA TAATATAATT AAACATGGTG ACCTAAGTAT TTTGAATTTC 300 AATGTAATAG GCAGTAAAAA TAAAGCTAAA AATATAAAAT AAAATTGTAA TAGCCAGTAA 61650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAATAG GCAGTAAAAA TAAAGCTAAA AATATAAAAT AAAATTGTAA TAGCCAGTAA 360 TATAGATAGA CGATAGTAAT GTATTTCATG TATTAATCTT CTATTTCATA ATAACTGTAT 61590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAGATAGA CGATAGTAAT GTATTTCATG TATTAATCTT CTATTTCATA ATAACTGTAT 420 CCTAATTTAA TTATTTAGTT TATAAAATGA AAAGAATTTT ATT 61547 |||||||||| |||||||||| |||||||||| |||||||||| ||| CCTAATTTAA TTATTTAGTT TATAAAATGA AAAGAATTTT ATT 463 hqPGS_C08HBa0027D09.1-_SGN-E319181- (62009 61547) ******************************************************************************** EST sequence 167 +strand 693 n (File: SGN-E371391+) 1 TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 61 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 121 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 181 TATCACTTCT TCCAACAAAA AGAAAAAGAG TCCACCTAGG AAAGATACGG AGGAAGTTGG 241 TGATATAGAT GAAGATGCTT TTGAGGCACT CTTTCAGCTG CTGGAAGAAG ATCTGAAAAA 301 TGATGAGCTA TCCTTGGACG ATGATGATAT AACTGAGGAG GACCTTGCGA AGCTTGAACG 361 TGAATTGGAG GAAGCACTGA AGGATGATGA ACTACTAGGA GAAATTGACT CAATTGCCAA 421 TGAGAACACT GAAAGTAGTA TGGCTAAAGA TGAAGAAGCA GTAGCAGAAG ATGCCAATGG 481 AGATGATGAT GATGAAGATG TAGATATGCT AGTGAAATTG AAAAATTGGC AACTTAAGAA 541 ACTGGCATAT GCCTTGAAAA GGGACGGCGT AAGTTAAATA TAAAGAATCT TGCTGCTGAC 601 CTATGCCTTG ATAGAGCTGG TGTTCTTTGA ATGCTTCGCA ATCCTCCACC AAATCTTGTG 661 TTACTGAGTG CTGCCTTACC TGATGAACCT GTT Predicted gene structure (within gDNA segment 66874 to 63074): Exon 1 66274 66067 ( 208 n); cDNA 1 208 ( 208 n); score: 1.000 Intron 1 66066 64708 (1359 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64707 64336 ( 372 n); cDNA 209 579 ( 371 n); score: 0.997 Intron 2 64335 63798 ( 538 n); Pd: 0.928 (s: 0.98), Pa: 0.716 (s: 0.94) Exon 3 63797 63684 ( 114 n); cDNA 580 693 ( 114 n); score: 0.974 MATCH C08HBa0027D09.1- SGN-E371391+ 0.994 694 1.001 C PGS_C08HBa0027D09.1-_SGN-E371391+ (66274 66067,64707 64336,63797 63684) Alignment (genomic DNA sequence = upper lines): TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 66215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 60 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 66155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 120 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 66095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 180 TATCACTTCT TCCAACAAAA AGAAAAAGGT ACTACCTTTG TAAAAACCAG TTTTATTTAT 66035 |||||||||| |||||||||| |||||||| TATCACTTCT TCCAACAAAA AGAAAAAG.. .......... .......... .......... 208 ACATTTATTT TGATATTTAA AGGGGTAGAT GTTATTCTTT TAGATTATCT TGTGGGTGGG 65975 .......... .......... .......... .......... .......... .......... 208 AAGGAGGGAA AATTGAAGAA GGGCAAGAAT GAAAATGCCT TTACTAGGGA TTAGAGTATT 65915 .......... .......... .......... .......... .......... .......... 208 TGAGCAGAGC AATTCTTTTT TTAAAAAAAA TAATAATAAG TACACATGAA GAACTTAGGA 65855 .......... .......... .......... .......... .......... .......... 208 TAGTTCTTTT TAGAATTAGT TTTTCATAGA GAAGGTATGA AATATTAAGT TAGAATTGAA 65795 .......... .......... .......... .......... .......... .......... 208 AAGAAATTGA AGTTTATGAA AGTTTTCTAA TCTGGTAGTA TGCTAAAAAT TCGAGCCTAA 65735 .......... .......... .......... .......... .......... .......... 208 ATTTTGTTTC CTACTGATTC CCTTCCCATG GTTCCCATTG AGCAATTTTC TTGTGTTTTC 65675 .......... .......... .......... .......... .......... .......... 208 TGAAATAGGT TGTTGTTTAT GAATTTGTTA TTTACTTGAT CATTTGAAAC TTTAATGTGC 65615 .......... .......... .......... .......... .......... .......... 208 TTGTATCTGT AAGTAAGTTA TGCTTGGCAA ACATAGTTAA GGGATGATTG ATGGTGGCAC 65555 .......... .......... .......... .......... .......... .......... 208 CCCTGGTGGA CTAGACACGA GCAATTCTGA TTTATATGTT TGTTTTAGGT AGTACCAAGT 65495 .......... .......... .......... .......... .......... .......... 208 TAATACCTAT TGATGTAGTT GAATAGAGCA AAGAAAAGTG TCGTACATTG CTGTGACTTT 65435 .......... .......... .......... .......... .......... .......... 208 TTGTTTTTGT TTAACATCAG AAAGAAATTG CACCTTGTTG GCTCGTATTT CAACAGCAGT 65375 .......... .......... .......... .......... .......... .......... 208 TGTTGCTCCA GTCAACTTAC TTGTCCAGTG TTACTTTGTA GGTTTTACAG TTGACAAGAT 65315 .......... .......... .......... .......... .......... .......... 208 GGTTTACAAA TTTCTTTGTT TTTGTAATTA TGCCAAATAG TTTTGACCTG CTTGATCTAC 65255 .......... .......... .......... .......... .......... .......... 208 TGCCCTTCTG CTTTTAGTAT AAGGGTCAAT ACCAGGAGAC AAATCTTTTC CGTGTAATTG 65195 .......... .......... .......... .......... .......... .......... 208 TATAGAGTAG TGATTTTCCA ATCCATACAT GTAACAGTAA CTTTATAACT TTTACAGTTG 65135 .......... .......... .......... .......... .......... .......... 208 ACGAGTTGGT TTAGATTTTC TGCAGCTATT TTATTCTGGT ACATGTGAAT ATCCATCAAA 65075 .......... .......... .......... .......... .......... .......... 208 GTGAAGCCTG ACCCATGAAC TTCTTCTAGT GCACGTTAAT GTCCATCAAG AAACCTTTCT 65015 .......... .......... .......... .......... .......... .......... 208 TAGGCTGATG GAATTCCTTC CTGTCTTATC TTTTCTGGGA TGTGGATTAT AATCTCCTTT 64955 .......... .......... .......... .......... .......... .......... 208 TAGTTGGCCT TCTGAATGTA CATGATTTTT AATGTGCTTT GTTTTTTTGA GATCTTTCAC 64895 .......... .......... .......... .......... .......... .......... 208 TTGAATATTC AAACTATTTT CCTCGACTAG AAGTTTTTTA GAAACATATC TTTGTTTTGC 64835 .......... .......... .......... .......... .......... .......... 208 TTTATTGGAC ATACTTGCTC ACGAACTTTG ATATCATCAA TAACCTCTTC TTTACAGCTC 64775 .......... .......... .......... .......... .......... .......... 208 AATTATTGTA TTTCACAGCT TTTACTATTG TTTACTAAAC CCGAGGCTCT GTTTGCTTCC 64715 .......... .......... .......... .......... .......... .......... 208 TGTTTAGAGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 64655 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 261 TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 64595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 321 TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 64535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 381 GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 64475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 441 GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 64415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 501 AGATATGCTA GTGAAATTGA AAAATTGGCA ACTTAAGAAA CTGGCATATG CCTTGAAAAA 64355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AGATATGCTA GTGAAATTGA AAAATTGGCA ACTTAAGAAA CTGGCATATG CCTTG-AAAA 560 GGGACGGCGT AAGTTAAATG TAAGCTGCAG TCTTAATCTA GTCTTCTCAA ATTCAGATAC 64295 |||||||||| ||||||||| GGGACGGCGT AAGTTAAAT. .......... .......... .......... .......... 579 CGCAATTATA TTACAGCTTC TCACGACTCA TAAGTTTTAA GGCCACTTTG GTTGTACTCT 64235 .......... .......... .......... .......... .......... .......... 579 GGCTCTTTGC GCATTCCAGC ATTAAGCATA TGGTACTAAG ATCATTTGTG GTATCTATCC 64175 .......... .......... .......... .......... .......... .......... 579 ATGTGTCTGA AGTTTTCTAA TGCTTGGGCA AAATTTACCT CTGCTTATCT CATCTTTCCT 64115 .......... .......... .......... .......... .......... .......... 579 ATGTATTCCC ATTCTTCAGA TTCCGTCGTT TTTGTAGCAT ATAGCTGGAC ATCTGCTTTT 64055 .......... .......... .......... .......... .......... .......... 579 GGCTTGCATT GAATTCTTGA CGTTAGTTTG TGAAAACTAT ATTATTTACA CCGGAAGCTT 63995 .......... .......... .......... .......... .......... .......... 579 ATTATTGATT ATTTTTCATT TGGTATTCAG CTTTCTGCTA GATAAACTCA TCATAAGTAT 63935 .......... .......... .......... .......... .......... .......... 579 AGATTGGAAG TTTCAGAACC TGTAGCAGAA TTAGAAGAGC AGAAAATGAA ACTGCTTCTT 63875 .......... .......... .......... .......... .......... .......... 579 CTAACCGCTA CTACCTATTT AAAGATAATA TGTCTAGTGG TGATAAGTTA GAACTTATAT 63815 .......... .......... .......... .......... .......... .......... 579 TTACCCTTCC CGTCCAGATA AAGAATCTTG CTGCTGACCT ATGCCTTGAT AGAGCTGTTG 63755 ||| |||||||||| |||||||||| |||||||||| ||||||| || .......... .......ATA AAGAATCTTG CTGCTGACCT ATGCCTTGAT AGAGCTGGTG 622 TTCTTGAAAT GCTTCGCAAT CCTCCACCAA ATCTTGTGTT ACTGAGTGCT GCCTTACCTG 63695 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTGAAT GCTTCGCAAT CCTCCACCAA ATCTTGTGTT ACTGAGTGCT GCCTTACCTG 682 ATGAACCTGT T 63684 |||||||||| | ATGAACCTGT T 693 hqPGS_C08HBa0027D09.1-_SGN-E371391+ (66274 66067,64707 64336,63797 63684) ******************************************************************************** EST sequence 266 +strand 638 n (File: SGN-E276843+) 1 TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 61 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 121 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 181 TATCACTTCT TCCAACAAAA AGAAAAAGAG TCCACCTAGG AAAGATACGG AGGAAGTTGG 241 TGATATAGAT GAAGATGCTT TTGAGGCACT CTTTCAGCTG CTGGAAGAAG ATCTGAAAAA 301 TGATGAGCTA TCCTTGGACG ATGATGATAT AACTGAGGAG GACCTTGCGA AGCTTGAACG 361 TGAATTGGAG GAAGCACTGA AGGATGATGA ACTACTAGGA GAAATTGACT CAATTGCCAA 421 TGAGAACACT GAAAGTAGTA TGGCTAAAGA TGAAGAAGCA GTAGCAGAAG ATGCCAATGG 481 AGATGATGAT GATGAAGATG TAGATATGCT AGTGAAATTG AAAAATTGGC AACTTAAGAA 541 ACTGGCATAT GCCTTGAAAA AGGGACGGCG TAAGTTAAAT ATAAAGAATC TTGCTGCTGA 601 CCTATGCCTT GATAGAGCTG TTGTTCTTGA AATGCTTC Predicted gene structure (within gDNA segment 66874 to 63130): Exon 1 66274 66067 ( 208 n); cDNA 1 208 ( 208 n); score: 1.000 Intron 1 66066 64708 (1359 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64707 64336 ( 372 n); cDNA 209 580 ( 372 n); score: 1.000 Intron 2 64335 63798 ( 538 n); Pd: 0.928 (s: 1.00), Pa: 0.716 (s: 1.00) Exon 3 63797 63740 ( 58 n); cDNA 581 638 ( 58 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E276843+ 1.000 638 1.000 C PGS_C08HBa0027D09.1-_SGN-E276843+ (66274 66067,64707 64336,63797 63740) Alignment (genomic DNA sequence = upper lines): TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 66215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 60 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 66155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 120 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 66095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 180 TATCACTTCT TCCAACAAAA AGAAAAAGGT ACTACCTTTG TAAAAACCAG TTTTATTTAT 66035 |||||||||| |||||||||| |||||||| TATCACTTCT TCCAACAAAA AGAAAAAG.. .......... .......... .......... 208 ACATTTATTT TGATATTTAA AGGGGTAGAT GTTATTCTTT TAGATTATCT TGTGGGTGGG 65975 .......... .......... .......... .......... .......... .......... 208 AAGGAGGGAA AATTGAAGAA GGGCAAGAAT GAAAATGCCT TTACTAGGGA TTAGAGTATT 65915 .......... .......... .......... .......... .......... .......... 208 TGAGCAGAGC AATTCTTTTT TTAAAAAAAA TAATAATAAG TACACATGAA GAACTTAGGA 65855 .......... .......... .......... .......... .......... .......... 208 TAGTTCTTTT TAGAATTAGT TTTTCATAGA GAAGGTATGA AATATTAAGT TAGAATTGAA 65795 .......... .......... .......... .......... .......... .......... 208 AAGAAATTGA AGTTTATGAA AGTTTTCTAA TCTGGTAGTA TGCTAAAAAT TCGAGCCTAA 65735 .......... .......... .......... .......... .......... .......... 208 ATTTTGTTTC CTACTGATTC CCTTCCCATG GTTCCCATTG AGCAATTTTC TTGTGTTTTC 65675 .......... .......... .......... .......... .......... .......... 208 TGAAATAGGT TGTTGTTTAT GAATTTGTTA TTTACTTGAT CATTTGAAAC TTTAATGTGC 65615 .......... .......... .......... .......... .......... .......... 208 TTGTATCTGT AAGTAAGTTA TGCTTGGCAA ACATAGTTAA GGGATGATTG ATGGTGGCAC 65555 .......... .......... .......... .......... .......... .......... 208 CCCTGGTGGA CTAGACACGA GCAATTCTGA TTTATATGTT TGTTTTAGGT AGTACCAAGT 65495 .......... .......... .......... .......... .......... .......... 208 TAATACCTAT TGATGTAGTT GAATAGAGCA AAGAAAAGTG TCGTACATTG CTGTGACTTT 65435 .......... .......... .......... .......... .......... .......... 208 TTGTTTTTGT TTAACATCAG AAAGAAATTG CACCTTGTTG GCTCGTATTT CAACAGCAGT 65375 .......... .......... .......... .......... .......... .......... 208 TGTTGCTCCA GTCAACTTAC TTGTCCAGTG TTACTTTGTA GGTTTTACAG TTGACAAGAT 65315 .......... .......... .......... .......... .......... .......... 208 GGTTTACAAA TTTCTTTGTT TTTGTAATTA TGCCAAATAG TTTTGACCTG CTTGATCTAC 65255 .......... .......... .......... .......... .......... .......... 208 TGCCCTTCTG CTTTTAGTAT AAGGGTCAAT ACCAGGAGAC AAATCTTTTC CGTGTAATTG 65195 .......... .......... .......... .......... .......... .......... 208 TATAGAGTAG TGATTTTCCA ATCCATACAT GTAACAGTAA CTTTATAACT TTTACAGTTG 65135 .......... .......... .......... .......... .......... .......... 208 ACGAGTTGGT TTAGATTTTC TGCAGCTATT TTATTCTGGT ACATGTGAAT ATCCATCAAA 65075 .......... .......... .......... .......... .......... .......... 208 GTGAAGCCTG ACCCATGAAC TTCTTCTAGT GCACGTTAAT GTCCATCAAG AAACCTTTCT 65015 .......... .......... .......... .......... .......... .......... 208 TAGGCTGATG GAATTCCTTC CTGTCTTATC TTTTCTGGGA TGTGGATTAT AATCTCCTTT 64955 .......... .......... .......... .......... .......... .......... 208 TAGTTGGCCT TCTGAATGTA CATGATTTTT AATGTGCTTT GTTTTTTTGA GATCTTTCAC 64895 .......... .......... .......... .......... .......... .......... 208 TTGAATATTC AAACTATTTT CCTCGACTAG AAGTTTTTTA GAAACATATC TTTGTTTTGC 64835 .......... .......... .......... .......... .......... .......... 208 TTTATTGGAC ATACTTGCTC ACGAACTTTG ATATCATCAA TAACCTCTTC TTTACAGCTC 64775 .......... .......... .......... .......... .......... .......... 208 AATTATTGTA TTTCACAGCT TTTACTATTG TTTACTAAAC CCGAGGCTCT GTTTGCTTCC 64715 .......... .......... .......... .......... .......... .......... 208 TGTTTAGAGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 64655 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 261 TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 64595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 321 TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 64535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 381 GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 64475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 441 GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 64415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 501 AGATATGCTA GTGAAATTGA AAAATTGGCA ACTTAAGAAA CTGGCATATG CCTTGAAAAA 64355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATATGCTA GTGAAATTGA AAAATTGGCA ACTTAAGAAA CTGGCATATG CCTTGAAAAA 561 GGGACGGCGT AAGTTAAATG TAAGCTGCAG TCTTAATCTA GTCTTCTCAA ATTCAGATAC 64295 |||||||||| ||||||||| GGGACGGCGT AAGTTAAAT. .......... .......... .......... .......... 580 CGCAATTATA TTACAGCTTC TCACGACTCA TAAGTTTTAA GGCCACTTTG GTTGTACTCT 64235 .......... .......... .......... .......... .......... .......... 580 GGCTCTTTGC GCATTCCAGC ATTAAGCATA TGGTACTAAG ATCATTTGTG GTATCTATCC 64175 .......... .......... .......... .......... .......... .......... 580 ATGTGTCTGA AGTTTTCTAA TGCTTGGGCA AAATTTACCT CTGCTTATCT CATCTTTCCT 64115 .......... .......... .......... .......... .......... .......... 580 ATGTATTCCC ATTCTTCAGA TTCCGTCGTT TTTGTAGCAT ATAGCTGGAC ATCTGCTTTT 64055 .......... .......... .......... .......... .......... .......... 580 GGCTTGCATT GAATTCTTGA CGTTAGTTTG TGAAAACTAT ATTATTTACA CCGGAAGCTT 63995 .......... .......... .......... .......... .......... .......... 580 ATTATTGATT ATTTTTCATT TGGTATTCAG CTTTCTGCTA GATAAACTCA TCATAAGTAT 63935 .......... .......... .......... .......... .......... .......... 580 AGATTGGAAG TTTCAGAACC TGTAGCAGAA TTAGAAGAGC AGAAAATGAA ACTGCTTCTT 63875 .......... .......... .......... .......... .......... .......... 580 CTAACCGCTA CTACCTATTT AAAGATAATA TGTCTAGTGG TGATAAGTTA GAACTTATAT 63815 .......... .......... .......... .......... .......... .......... 580 TTACCCTTCC CGTCCAGATA AAGAATCTTG CTGCTGACCT ATGCCTTGAT AGAGCTGTTG 63755 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......ATA AAGAATCTTG CTGCTGACCT ATGCCTTGAT AGAGCTGTTG 623 TTCTTGAAAT GCTTC 63740 |||||||||| ||||| TTCTTGAAAT GCTTC 638 hqPGS_C08HBa0027D09.1-_SGN-E276843+ (66274 66067,64707 64336,63797 63740) ******************************************************************************** EST sequence 163 +strand 636 n (File: SGN-E248696+) 1 ATTTGAGAAA GTAGAGAATG GCGTCTTCTT CCACAACTCT GGGCATTTCC ATTAGACTTG 61 GATGTTCCAG CAATGAACAT CTCATGTTGG TTCATCCCAG AAGCAGAACT AACATCGCCT 121 TGCTATTTCA TTCTTATTCC TCTCGTCTTG TTACTTTCTC TCGCCGTCGA AACAATTCTG 181 CTATCACTTC TTCCAACAAA AAGAAAAAGA GTCCACCTAG GAAAGATACG GAGGAAGTTG 241 GTGATATAGA TGAAGATGCT TTTGAGGCAC TCTTTCAGCT GCTGGAAGAA GATCTGAAAA 301 ATGATGAGCT ATCCTTGGAC GATGATGATA TAACTGAGGA GGACCTTGCG AAGCTTGAAC 361 GTGAATTGGA GGAAGCACTG AAGGATGATG AACTACTAGG AGAAATTGAC TCAATTGCCA 421 ATGAGAACAC TGAAAGTAGT ATGGCTAAAG ATGAAGAAGC AGTAGCAGAA GATGCCAATG 481 GAGATGATGA TGATGAAGAT GTAGATATGC TAGTGAAATT GAAAAATTGG CAACTTAAGA 541 AACTGGCATA TGCCTTGAAA AAGGGACGGC GTAAGTTAAA TATAAAGAAT CTTGCTGCTG 601 ACCTATGCCT TGATAGAGCT GTTGTTCTTG AAATGC Predicted gene structure (within gDNA segment 66875 to 63133): Exon 1 66275 66067 ( 209 n); cDNA 1 209 ( 209 n); score: 1.000 Intron 1 66066 64708 (1359 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64707 64336 ( 372 n); cDNA 210 581 ( 372 n); score: 1.000 Intron 2 64335 63798 ( 538 n); Pd: 0.928 (s: 1.00), Pa: 0.716 (s: 1.00) Exon 3 63797 63743 ( 55 n); cDNA 582 636 ( 55 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E248696+ 1.000 636 1.000 C PGS_C08HBa0027D09.1-_SGN-E248696+ (66275 66067,64707 64336,63797 63743) Alignment (genomic DNA sequence = upper lines): ATTTGAGAAA GTAGAGAATG GCGTCTTCTT CCACAACTCT GGGCATTTCC ATTAGACTTG 66216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGAGAAA GTAGAGAATG GCGTCTTCTT CCACAACTCT GGGCATTTCC ATTAGACTTG 60 GATGTTCCAG CAATGAACAT CTCATGTTGG TTCATCCCAG AAGCAGAACT AACATCGCCT 66156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTCCAG CAATGAACAT CTCATGTTGG TTCATCCCAG AAGCAGAACT AACATCGCCT 120 TGCTATTTCA TTCTTATTCC TCTCGTCTTG TTACTTTCTC TCGCCGTCGA AACAATTCTG 66096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTATTTCA TTCTTATTCC TCTCGTCTTG TTACTTTCTC TCGCCGTCGA AACAATTCTG 180 CTATCACTTC TTCCAACAAA AAGAAAAAGG TACTACCTTT GTAAAAACCA GTTTTATTTA 66036 |||||||||| |||||||||| ||||||||| CTATCACTTC TTCCAACAAA AAGAAAAAG. .......... .......... .......... 209 TACATTTATT TTGATATTTA AAGGGGTAGA TGTTATTCTT TTAGATTATC TTGTGGGTGG 65976 .......... .......... .......... .......... .......... .......... 209 GAAGGAGGGA AAATTGAAGA AGGGCAAGAA TGAAAATGCC TTTACTAGGG ATTAGAGTAT 65916 .......... .......... .......... .......... .......... .......... 209 TTGAGCAGAG CAATTCTTTT TTTAAAAAAA ATAATAATAA GTACACATGA AGAACTTAGG 65856 .......... .......... .......... .......... .......... .......... 209 ATAGTTCTTT TTAGAATTAG TTTTTCATAG AGAAGGTATG AAATATTAAG TTAGAATTGA 65796 .......... .......... .......... .......... .......... .......... 209 AAAGAAATTG AAGTTTATGA AAGTTTTCTA ATCTGGTAGT ATGCTAAAAA TTCGAGCCTA 65736 .......... .......... .......... .......... .......... .......... 209 AATTTTGTTT CCTACTGATT CCCTTCCCAT GGTTCCCATT GAGCAATTTT CTTGTGTTTT 65676 .......... .......... .......... .......... .......... .......... 209 CTGAAATAGG TTGTTGTTTA TGAATTTGTT ATTTACTTGA TCATTTGAAA CTTTAATGTG 65616 .......... .......... .......... .......... .......... .......... 209 CTTGTATCTG TAAGTAAGTT ATGCTTGGCA AACATAGTTA AGGGATGATT GATGGTGGCA 65556 .......... .......... .......... .......... .......... .......... 209 CCCCTGGTGG ACTAGACACG AGCAATTCTG ATTTATATGT TTGTTTTAGG TAGTACCAAG 65496 .......... .......... .......... .......... .......... .......... 209 TTAATACCTA TTGATGTAGT TGAATAGAGC AAAGAAAAGT GTCGTACATT GCTGTGACTT 65436 .......... .......... .......... .......... .......... .......... 209 TTTGTTTTTG TTTAACATCA GAAAGAAATT GCACCTTGTT GGCTCGTATT TCAACAGCAG 65376 .......... .......... .......... .......... .......... .......... 209 TTGTTGCTCC AGTCAACTTA CTTGTCCAGT GTTACTTTGT AGGTTTTACA GTTGACAAGA 65316 .......... .......... .......... .......... .......... .......... 209 TGGTTTACAA ATTTCTTTGT TTTTGTAATT ATGCCAAATA GTTTTGACCT GCTTGATCTA 65256 .......... .......... .......... .......... .......... .......... 209 CTGCCCTTCT GCTTTTAGTA TAAGGGTCAA TACCAGGAGA CAAATCTTTT CCGTGTAATT 65196 .......... .......... .......... .......... .......... .......... 209 GTATAGAGTA GTGATTTTCC AATCCATACA TGTAACAGTA ACTTTATAAC TTTTACAGTT 65136 .......... .......... .......... .......... .......... .......... 209 GACGAGTTGG TTTAGATTTT CTGCAGCTAT TTTATTCTGG TACATGTGAA TATCCATCAA 65076 .......... .......... .......... .......... .......... .......... 209 AGTGAAGCCT GACCCATGAA CTTCTTCTAG TGCACGTTAA TGTCCATCAA GAAACCTTTC 65016 .......... .......... .......... .......... .......... .......... 209 TTAGGCTGAT GGAATTCCTT CCTGTCTTAT CTTTTCTGGG ATGTGGATTA TAATCTCCTT 64956 .......... .......... .......... .......... .......... .......... 209 TTAGTTGGCC TTCTGAATGT ACATGATTTT TAATGTGCTT TGTTTTTTTG AGATCTTTCA 64896 .......... .......... .......... .......... .......... .......... 209 CTTGAATATT CAAACTATTT TCCTCGACTA GAAGTTTTTT AGAAACATAT CTTTGTTTTG 64836 .......... .......... .......... .......... .......... .......... 209 CTTTATTGGA CATACTTGCT CACGAACTTT GATATCATCA ATAACCTCTT CTTTACAGCT 64776 .......... .......... .......... .......... .......... .......... 209 CAATTATTGT ATTTCACAGC TTTTACTATT GTTTACTAAA CCCGAGGCTC TGTTTGCTTC 64716 .......... .......... .......... .......... .......... .......... 209 CTGTTTAGAG TCCACCTAGG AAAGATACGG AGGAAGTTGG TGATATAGAT GAAGATGCTT 64656 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AG TCCACCTAGG AAAGATACGG AGGAAGTTGG TGATATAGAT GAAGATGCTT 261 TTGAGGCACT CTTTCAGCTG CTGGAAGAAG ATCTGAAAAA TGATGAGCTA TCCTTGGACG 64596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGGCACT CTTTCAGCTG CTGGAAGAAG ATCTGAAAAA TGATGAGCTA TCCTTGGACG 321 ATGATGATAT AACTGAGGAG GACCTTGCGA AGCTTGAACG TGAATTGGAG GAAGCACTGA 64536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGATAT AACTGAGGAG GACCTTGCGA AGCTTGAACG TGAATTGGAG GAAGCACTGA 381 AGGATGATGA ACTACTAGGA GAAATTGACT CAATTGCCAA TGAGAACACT GAAAGTAGTA 64476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATGATGA ACTACTAGGA GAAATTGACT CAATTGCCAA TGAGAACACT GAAAGTAGTA 441 TGGCTAAAGA TGAAGAAGCA GTAGCAGAAG ATGCCAATGG AGATGATGAT GATGAAGATG 64416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTAAAGA TGAAGAAGCA GTAGCAGAAG ATGCCAATGG AGATGATGAT GATGAAGATG 501 TAGATATGCT AGTGAAATTG AAAAATTGGC AACTTAAGAA ACTGGCATAT GCCTTGAAAA 64356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATATGCT AGTGAAATTG AAAAATTGGC AACTTAAGAA ACTGGCATAT GCCTTGAAAA 561 AGGGACGGCG TAAGTTAAAT GTAAGCTGCA GTCTTAATCT AGTCTTCTCA AATTCAGATA 64296 |||||||||| |||||||||| AGGGACGGCG TAAGTTAAAT .......... .......... .......... .......... 581 CCGCAATTAT ATTACAGCTT CTCACGACTC ATAAGTTTTA AGGCCACTTT GGTTGTACTC 64236 .......... .......... .......... .......... .......... .......... 581 TGGCTCTTTG CGCATTCCAG CATTAAGCAT ATGGTACTAA GATCATTTGT GGTATCTATC 64176 .......... .......... .......... .......... .......... .......... 581 CATGTGTCTG AAGTTTTCTA ATGCTTGGGC AAAATTTACC TCTGCTTATC TCATCTTTCC 64116 .......... .......... .......... .......... .......... .......... 581 TATGTATTCC CATTCTTCAG ATTCCGTCGT TTTTGTAGCA TATAGCTGGA CATCTGCTTT 64056 .......... .......... .......... .......... .......... .......... 581 TGGCTTGCAT TGAATTCTTG ACGTTAGTTT GTGAAAACTA TATTATTTAC ACCGGAAGCT 63996 .......... .......... .......... .......... .......... .......... 581 TATTATTGAT TATTTTTCAT TTGGTATTCA GCTTTCTGCT AGATAAACTC ATCATAAGTA 63936 .......... .......... .......... .......... .......... .......... 581 TAGATTGGAA GTTTCAGAAC CTGTAGCAGA ATTAGAAGAG CAGAAAATGA AACTGCTTCT 63876 .......... .......... .......... .......... .......... .......... 581 TCTAACCGCT ACTACCTATT TAAAGATAAT ATGTCTAGTG GTGATAAGTT AGAACTTATA 63816 .......... .......... .......... .......... .......... .......... 581 TTTACCCTTC CCGTCCAGAT AAAGAATCTT GCTGCTGACC TATGCCTTGA TAGAGCTGTT 63756 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT AAAGAATCTT GCTGCTGACC TATGCCTTGA TAGAGCTGTT 623 GTTCTTGAAA TGC 63743 |||||||||| ||| GTTCTTGAAA TGC 636 hqPGS_C08HBa0027D09.1-_SGN-E248696+ (66275 66067,64707 64336,63797 63743) ******************************************************************************** EST sequence 270 +strand 559 n (File: SGN-E276836+) 1 TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 61 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 121 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 181 TATCACTTCT TCCAACAAAA AGAAAAAGAG TCCACCTAGG AAAGATACGG AGGAAGTTGG 241 TGATATAGAT GAAGATGCTT TTGAGGCACT CTTTCAGCTG CTGGAAGAAG ATCTGAAAAA 301 TGATGAGCTA TCCTTGGACG ATGATGATAT AACTGAGGAG GACCTTGCGA AGCTTGAACG 361 TGAATTGGAG GAAGCACTGA AGGATGATGA ACTACTAGGA GAAATTGACT CAATTGCCAA 421 TGAGAACACT GAAAGTAGTA TGGCTAAAGA TGAAGAAGCA GTAGCAGAAG ATGCCAATGG 481 AGATGATGAT GATGAAGATG TAGATATGCT AGTGAAATTG AAAAATTGGC AACTTAAGAA 541 ACTGGCATAT GCCTTGAAA Predicted gene structure (within gDNA segment 66874 to 63747): Exon 1 66274 66067 ( 208 n); cDNA 1 208 ( 208 n); score: 1.000 Intron 1 66066 64708 (1359 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64707 64357 ( 351 n); cDNA 209 559 ( 351 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E276836+ 1.000 559 1.000 C PGS_C08HBa0027D09.1-_SGN-E276836+ (66274 66067,64707 64357) Alignment (genomic DNA sequence = upper lines): TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 66215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 60 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 66155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 120 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 66095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 180 TATCACTTCT TCCAACAAAA AGAAAAAGGT ACTACCTTTG TAAAAACCAG TTTTATTTAT 66035 |||||||||| |||||||||| |||||||| TATCACTTCT TCCAACAAAA AGAAAAAG.. .......... .......... .......... 208 ACATTTATTT TGATATTTAA AGGGGTAGAT GTTATTCTTT TAGATTATCT TGTGGGTGGG 65975 .......... .......... .......... .......... .......... .......... 208 AAGGAGGGAA AATTGAAGAA GGGCAAGAAT GAAAATGCCT TTACTAGGGA TTAGAGTATT 65915 .......... .......... .......... .......... .......... .......... 208 TGAGCAGAGC AATTCTTTTT TTAAAAAAAA TAATAATAAG TACACATGAA GAACTTAGGA 65855 .......... .......... .......... .......... .......... .......... 208 TAGTTCTTTT TAGAATTAGT TTTTCATAGA GAAGGTATGA AATATTAAGT TAGAATTGAA 65795 .......... .......... .......... .......... .......... .......... 208 AAGAAATTGA AGTTTATGAA AGTTTTCTAA TCTGGTAGTA TGCTAAAAAT TCGAGCCTAA 65735 .......... .......... .......... .......... .......... .......... 208 ATTTTGTTTC CTACTGATTC CCTTCCCATG GTTCCCATTG AGCAATTTTC TTGTGTTTTC 65675 .......... .......... .......... .......... .......... .......... 208 TGAAATAGGT TGTTGTTTAT GAATTTGTTA TTTACTTGAT CATTTGAAAC TTTAATGTGC 65615 .......... .......... .......... .......... .......... .......... 208 TTGTATCTGT AAGTAAGTTA TGCTTGGCAA ACATAGTTAA GGGATGATTG ATGGTGGCAC 65555 .......... .......... .......... .......... .......... .......... 208 CCCTGGTGGA CTAGACACGA GCAATTCTGA TTTATATGTT TGTTTTAGGT AGTACCAAGT 65495 .......... .......... .......... .......... .......... .......... 208 TAATACCTAT TGATGTAGTT GAATAGAGCA AAGAAAAGTG TCGTACATTG CTGTGACTTT 65435 .......... .......... .......... .......... .......... .......... 208 TTGTTTTTGT TTAACATCAG AAAGAAATTG CACCTTGTTG GCTCGTATTT CAACAGCAGT 65375 .......... .......... .......... .......... .......... .......... 208 TGTTGCTCCA GTCAACTTAC TTGTCCAGTG TTACTTTGTA GGTTTTACAG TTGACAAGAT 65315 .......... .......... .......... .......... .......... .......... 208 GGTTTACAAA TTTCTTTGTT TTTGTAATTA TGCCAAATAG TTTTGACCTG CTTGATCTAC 65255 .......... .......... .......... .......... .......... .......... 208 TGCCCTTCTG CTTTTAGTAT AAGGGTCAAT ACCAGGAGAC AAATCTTTTC CGTGTAATTG 65195 .......... .......... .......... .......... .......... .......... 208 TATAGAGTAG TGATTTTCCA ATCCATACAT GTAACAGTAA CTTTATAACT TTTACAGTTG 65135 .......... .......... .......... .......... .......... .......... 208 ACGAGTTGGT TTAGATTTTC TGCAGCTATT TTATTCTGGT ACATGTGAAT ATCCATCAAA 65075 .......... .......... .......... .......... .......... .......... 208 GTGAAGCCTG ACCCATGAAC TTCTTCTAGT GCACGTTAAT GTCCATCAAG AAACCTTTCT 65015 .......... .......... .......... .......... .......... .......... 208 TAGGCTGATG GAATTCCTTC CTGTCTTATC TTTTCTGGGA TGTGGATTAT AATCTCCTTT 64955 .......... .......... .......... .......... .......... .......... 208 TAGTTGGCCT TCTGAATGTA CATGATTTTT AATGTGCTTT GTTTTTTTGA GATCTTTCAC 64895 .......... .......... .......... .......... .......... .......... 208 TTGAATATTC AAACTATTTT CCTCGACTAG AAGTTTTTTA GAAACATATC TTTGTTTTGC 64835 .......... .......... .......... .......... .......... .......... 208 TTTATTGGAC ATACTTGCTC ACGAACTTTG ATATCATCAA TAACCTCTTC TTTACAGCTC 64775 .......... .......... .......... .......... .......... .......... 208 AATTATTGTA TTTCACAGCT TTTACTATTG TTTACTAAAC CCGAGGCTCT GTTTGCTTCC 64715 .......... .......... .......... .......... .......... .......... 208 TGTTTAGAGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 64655 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 261 TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 64595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 321 TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 64535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 381 GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 64475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 441 GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 64415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 501 AGATATGCTA GTGAAATTGA AAAATTGGCA ACTTAAGAAA CTGGCATATG CCTTGAAA 64357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGATATGCTA GTGAAATTGA AAAATTGGCA ACTTAAGAAA CTGGCATATG CCTTGAAA 559 hqPGS_C08HBa0027D09.1-_SGN-E276836+ (66274 66067,64707 64357) ******************************************************************************** EST sequence 221 +strand 509 n (File: SGN-E271475+) 1 TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 61 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 121 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 181 TATCACTTCT TCCAACAAAA AGAAAAAGAG TCCACCTAGG AAAGATACGG AGGAAGTTGG 241 TGATATAGAT GAAGATGCTT TTGAGGCACT CTTTCAGCTG CTGGAAGAAG ATCTGAAAAA 301 TGATGAGCTA TCCTTGGACG ATGATGATAT AACTGAGGAG GACCTTGCGA AGCTTGAACG 361 TGAATTGGAG GAAGCACTGA AGGATGATGA ACTACTAGGA GAAATTGACT CAATTGCCAA 421 TGAGAACACT GAAAGTAGTA TGGCTAAAGA TGAAGAAGCA GTAGCAGAAG ATGCCAATGG 481 AGATGATGAT GATGAAGATG TAGATATGC Predicted gene structure (within gDNA segment 66874 to 63797): Exon 1 66274 66067 ( 208 n); cDNA 1 208 ( 208 n); score: 1.000 Intron 1 66066 64708 (1359 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64707 64407 ( 301 n); cDNA 209 509 ( 301 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E271475+ 1.000 509 1.000 C PGS_C08HBa0027D09.1-_SGN-E271475+ (66274 66067,64707 64407) Alignment (genomic DNA sequence = upper lines): TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 66215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 60 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 66155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 120 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 66095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 180 TATCACTTCT TCCAACAAAA AGAAAAAGGT ACTACCTTTG TAAAAACCAG TTTTATTTAT 66035 |||||||||| |||||||||| |||||||| TATCACTTCT TCCAACAAAA AGAAAAAG.. .......... .......... .......... 208 ACATTTATTT TGATATTTAA AGGGGTAGAT GTTATTCTTT TAGATTATCT TGTGGGTGGG 65975 .......... .......... .......... .......... .......... .......... 208 AAGGAGGGAA AATTGAAGAA GGGCAAGAAT GAAAATGCCT TTACTAGGGA TTAGAGTATT 65915 .......... .......... .......... .......... .......... .......... 208 TGAGCAGAGC AATTCTTTTT TTAAAAAAAA TAATAATAAG TACACATGAA GAACTTAGGA 65855 .......... .......... .......... .......... .......... .......... 208 TAGTTCTTTT TAGAATTAGT TTTTCATAGA GAAGGTATGA AATATTAAGT TAGAATTGAA 65795 .......... .......... .......... .......... .......... .......... 208 AAGAAATTGA AGTTTATGAA AGTTTTCTAA TCTGGTAGTA TGCTAAAAAT TCGAGCCTAA 65735 .......... .......... .......... .......... .......... .......... 208 ATTTTGTTTC CTACTGATTC CCTTCCCATG GTTCCCATTG AGCAATTTTC TTGTGTTTTC 65675 .......... .......... .......... .......... .......... .......... 208 TGAAATAGGT TGTTGTTTAT GAATTTGTTA TTTACTTGAT CATTTGAAAC TTTAATGTGC 65615 .......... .......... .......... .......... .......... .......... 208 TTGTATCTGT AAGTAAGTTA TGCTTGGCAA ACATAGTTAA GGGATGATTG ATGGTGGCAC 65555 .......... .......... .......... .......... .......... .......... 208 CCCTGGTGGA CTAGACACGA GCAATTCTGA TTTATATGTT TGTTTTAGGT AGTACCAAGT 65495 .......... .......... .......... .......... .......... .......... 208 TAATACCTAT TGATGTAGTT GAATAGAGCA AAGAAAAGTG TCGTACATTG CTGTGACTTT 65435 .......... .......... .......... .......... .......... .......... 208 TTGTTTTTGT TTAACATCAG AAAGAAATTG CACCTTGTTG GCTCGTATTT CAACAGCAGT 65375 .......... .......... .......... .......... .......... .......... 208 TGTTGCTCCA GTCAACTTAC TTGTCCAGTG TTACTTTGTA GGTTTTACAG TTGACAAGAT 65315 .......... .......... .......... .......... .......... .......... 208 GGTTTACAAA TTTCTTTGTT TTTGTAATTA TGCCAAATAG TTTTGACCTG CTTGATCTAC 65255 .......... .......... .......... .......... .......... .......... 208 TGCCCTTCTG CTTTTAGTAT AAGGGTCAAT ACCAGGAGAC AAATCTTTTC CGTGTAATTG 65195 .......... .......... .......... .......... .......... .......... 208 TATAGAGTAG TGATTTTCCA ATCCATACAT GTAACAGTAA CTTTATAACT TTTACAGTTG 65135 .......... .......... .......... .......... .......... .......... 208 ACGAGTTGGT TTAGATTTTC TGCAGCTATT TTATTCTGGT ACATGTGAAT ATCCATCAAA 65075 .......... .......... .......... .......... .......... .......... 208 GTGAAGCCTG ACCCATGAAC TTCTTCTAGT GCACGTTAAT GTCCATCAAG AAACCTTTCT 65015 .......... .......... .......... .......... .......... .......... 208 TAGGCTGATG GAATTCCTTC CTGTCTTATC TTTTCTGGGA TGTGGATTAT AATCTCCTTT 64955 .......... .......... .......... .......... .......... .......... 208 TAGTTGGCCT TCTGAATGTA CATGATTTTT AATGTGCTTT GTTTTTTTGA GATCTTTCAC 64895 .......... .......... .......... .......... .......... .......... 208 TTGAATATTC AAACTATTTT CCTCGACTAG AAGTTTTTTA GAAACATATC TTTGTTTTGC 64835 .......... .......... .......... .......... .......... .......... 208 TTTATTGGAC ATACTTGCTC ACGAACTTTG ATATCATCAA TAACCTCTTC TTTACAGCTC 64775 .......... .......... .......... .......... .......... .......... 208 AATTATTGTA TTTCACAGCT TTTACTATTG TTTACTAAAC CCGAGGCTCT GTTTGCTTCC 64715 .......... .......... .......... .......... .......... .......... 208 TGTTTAGAGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 64655 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 261 TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 64595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 321 TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 64535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 381 GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 64475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGATGAA CTACTAGGAG AAATTGACTC AATTGCCAAT GAGAACACTG AAAGTAGTAT 441 GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 64415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTAAAGAT GAAGAAGCAG TAGCAGAAGA TGCCAATGGA GATGATGATG ATGAAGATGT 501 AGATATGC 64407 |||||||| AGATATGC 509 hqPGS_C08HBa0027D09.1-_SGN-E271475+ (66274 66067,64707 64407) ******************************************************************************** EST sequence 269 +strand 419 n (File: SGN-E276641+) 1 AATTCCACAA CTCTGGGCAT TTCCATTAGA CTTGGATGTT CCACCAATGA ACATCTCATG 61 TTGGTTCATC CCAGAAGCAG AACTAACATC GCCTTGCTAT TTCATTCTTA TTCCTCTCGT 121 CTTGTTACTT TCTCTCGCCG TCGAAACAAT TCTGCTATCA CTTCTTCCAA CATAAAGAAA 181 AAGAGTCCAC CTAGGAAAGA TACGGAGGAA GTTGGTGATA TAGATGAAGA TGCTTTTGAG 241 GCACTCTTTC AGCTGCTGGA AGAAGATCTG AAAAATGATG AGCTATCCTT GGACGATGAT 301 GATATAACTG AGGAGGACCT TGCGAAGCTT GAACGTGAAT TGGAGGAAGC ACTGAAGGAT 361 GATGAACTAC TAGGAGAAAT TGACTCAATT GCCAATGAGA ACACTGAAAG TAGTATGGC Predicted gene structure (within gDNA segment 66867 to 63862): Exon 1 66247 66067 ( 181 n); cDNA 3 183 ( 181 n); score: 0.989 Intron 1 66066 64708 (1359 n); Pd: 1.000 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 2 64707 64472 ( 236 n); cDNA 184 419 ( 236 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E276641+ 0.995 417 0.995 C PGS_C08HBa0027D09.1-_SGN-E276641+ (66247 66067,64707 64472) Alignment (genomic DNA sequence = upper lines): TTCCACAACT CTGGGCATTT CCATTAGACT TGGATGTTCC AGCAATGAAC ATCTCATGTT 66188 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TTCCACAACT CTGGGCATTT CCATTAGACT TGGATGTTCC ACCAATGAAC ATCTCATGTT 62 GGTTCATCCC AGAAGCAGAA CTAACATCGC CTTGCTATTT CATTCTTATT CCTCTCGTCT 66128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCATCCC AGAAGCAGAA CTAACATCGC CTTGCTATTT CATTCTTATT CCTCTCGTCT 122 TGTTACTTTC TCTCGCCGTC GAAACAATTC TGCTATCACT TCTTCCAACA AAAAGAAAAA 66068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGTTACTTTC TCTCGCCGTC GAAACAATTC TGCTATCACT TCTTCCAACA TAAAGAAAAA 182 GGTACTACCT TTGTAAAAAC CAGTTTTATT TATACATTTA TTTTGATATT TAAAGGGGTA 66008 | G......... .......... .......... .......... .......... .......... 183 GATGTTATTC TTTTAGATTA TCTTGTGGGT GGGAAGGAGG GAAAATTGAA GAAGGGCAAG 65948 .......... .......... .......... .......... .......... .......... 183 AATGAAAATG CCTTTACTAG GGATTAGAGT ATTTGAGCAG AGCAATTCTT TTTTTAAAAA 65888 .......... .......... .......... .......... .......... .......... 183 AAATAATAAT AAGTACACAT GAAGAACTTA GGATAGTTCT TTTTAGAATT AGTTTTTCAT 65828 .......... .......... .......... .......... .......... .......... 183 AGAGAAGGTA TGAAATATTA AGTTAGAATT GAAAAGAAAT TGAAGTTTAT GAAAGTTTTC 65768 .......... .......... .......... .......... .......... .......... 183 TAATCTGGTA GTATGCTAAA AATTCGAGCC TAAATTTTGT TTCCTACTGA TTCCCTTCCC 65708 .......... .......... .......... .......... .......... .......... 183 ATGGTTCCCA TTGAGCAATT TTCTTGTGTT TTCTGAAATA GGTTGTTGTT TATGAATTTG 65648 .......... .......... .......... .......... .......... .......... 183 TTATTTACTT GATCATTTGA AACTTTAATG TGCTTGTATC TGTAAGTAAG TTATGCTTGG 65588 .......... .......... .......... .......... .......... .......... 183 CAAACATAGT TAAGGGATGA TTGATGGTGG CACCCCTGGT GGACTAGACA CGAGCAATTC 65528 .......... .......... .......... .......... .......... .......... 183 TGATTTATAT GTTTGTTTTA GGTAGTACCA AGTTAATACC TATTGATGTA GTTGAATAGA 65468 .......... .......... .......... .......... .......... .......... 183 GCAAAGAAAA GTGTCGTACA TTGCTGTGAC TTTTTGTTTT TGTTTAACAT CAGAAAGAAA 65408 .......... .......... .......... .......... .......... .......... 183 TTGCACCTTG TTGGCTCGTA TTTCAACAGC AGTTGTTGCT CCAGTCAACT TACTTGTCCA 65348 .......... .......... .......... .......... .......... .......... 183 GTGTTACTTT GTAGGTTTTA CAGTTGACAA GATGGTTTAC AAATTTCTTT GTTTTTGTAA 65288 .......... .......... .......... .......... .......... .......... 183 TTATGCCAAA TAGTTTTGAC CTGCTTGATC TACTGCCCTT CTGCTTTTAG TATAAGGGTC 65228 .......... .......... .......... .......... .......... .......... 183 AATACCAGGA GACAAATCTT TTCCGTGTAA TTGTATAGAG TAGTGATTTT CCAATCCATA 65168 .......... .......... .......... .......... .......... .......... 183 CATGTAACAG TAACTTTATA ACTTTTACAG TTGACGAGTT GGTTTAGATT TTCTGCAGCT 65108 .......... .......... .......... .......... .......... .......... 183 ATTTTATTCT GGTACATGTG AATATCCATC AAAGTGAAGC CTGACCCATG AACTTCTTCT 65048 .......... .......... .......... .......... .......... .......... 183 AGTGCACGTT AATGTCCATC AAGAAACCTT TCTTAGGCTG ATGGAATTCC TTCCTGTCTT 64988 .......... .......... .......... .......... .......... .......... 183 ATCTTTTCTG GGATGTGGAT TATAATCTCC TTTTAGTTGG CCTTCTGAAT GTACATGATT 64928 .......... .......... .......... .......... .......... .......... 183 TTTAATGTGC TTTGTTTTTT TGAGATCTTT CACTTGAATA TTCAAACTAT TTTCCTCGAC 64868 .......... .......... .......... .......... .......... .......... 183 TAGAAGTTTT TTAGAAACAT ATCTTTGTTT TGCTTTATTG GACATACTTG CTCACGAACT 64808 .......... .......... .......... .......... .......... .......... 183 TTGATATCAT CAATAACCTC TTCTTTACAG CTCAATTATT GTATTTCACA GCTTTTACTA 64748 .......... .......... .......... .......... .......... .......... 183 TTGTTTACTA AACCCGAGGC TCTGTTTGCT TCCTGTTTAG AGTCCACCTA GGAAAGATAC 64688 |||||||||| |||||||||| .......... .......... .......... .......... AGTCCACCTA GGAAAGATAC 203 GGAGGAAGTT GGTGATATAG ATGAAGATGC TTTTGAGGCA CTCTTTCAGC TGCTGGAAGA 64628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGAAGTT GGTGATATAG ATGAAGATGC TTTTGAGGCA CTCTTTCAGC TGCTGGAAGA 263 AGATCTGAAA AATGATGAGC TATCCTTGGA CGATGATGAT ATAACTGAGG AGGACCTTGC 64568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCTGAAA AATGATGAGC TATCCTTGGA CGATGATGAT ATAACTGAGG AGGACCTTGC 323 GAAGCTTGAA CGTGAATTGG AGGAAGCACT GAAGGATGAT GAACTACTAG GAGAAATTGA 64508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTTGAA CGTGAATTGG AGGAAGCACT GAAGGATGAT GAACTACTAG GAGAAATTGA 383 CTCAATTGCC AATGAGAACA CTGAAAGTAG TATGGC 64472 |||||||||| |||||||||| |||||||||| |||||| CTCAATTGCC AATGAGAACA CTGAAAGTAG TATGGC 419 hqPGS_C08HBa0027D09.1-_SGN-E276641+ (66247 66067,64707 64472) ******************************************************************************** EST sequence 267 +strand 411 n (File: SGN-E276634+) 1 TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 61 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 121 GCTATTTCAT TCTTATTCCT CTCGTCTTGG TACTTTCTCT CGCCGTCGAA ACAATTCTGC 181 TATCACTTCT TCCAACAAAA AGAAAAAGAG TCCACCTAGG AAAGATACGG AGGAAGTTGG 241 TGATATAGAT GAAGATGCTT TTGAGGCACT CTTTCAGCTG CTGGAAGAAG ATCTGAAAAA 301 TGATGAGCTA TCCTTGGACG ATGATGATAT AACTGAGGAG GACCTTGCGA AGCTTGAACG 361 TGAATTGGAG GAAGCACTGA AGGATGATGA ACTACTAGGA GAAATTGACT C Predicted gene structure (within gDNA segment 66874 to 63895): Exon 1 66274 66067 ( 208 n); cDNA 1 208 ( 208 n); score: 0.995 Intron 1 66066 64708 (1359 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64707 64505 ( 203 n); cDNA 209 411 ( 203 n); score: 1.000 MATCH C08HBa0027D09.1- SGN-E276634+ 0.998 411 1.000 C PGS_C08HBa0027D09.1-_SGN-E276634+ (66274 66067,64707 64505) Alignment (genomic DNA sequence = upper lines): TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 66215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGAAAG TAGAGAATGG CGTCTTCTTC CACAACTCTG GGCATTTCCA TTAGACTTGG 60 ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 66155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCCAGC AATGAACATC TCATGTTGGT TCATCCCAGA AGCAGAACTA ACATCGCCTT 120 GCTATTTCAT TCTTATTCCT CTCGTCTTGT TACTTTCTCT CGCCGTCGAA ACAATTCTGC 66095 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GCTATTTCAT TCTTATTCCT CTCGTCTTGG TACTTTCTCT CGCCGTCGAA ACAATTCTGC 180 TATCACTTCT TCCAACAAAA AGAAAAAGGT ACTACCTTTG TAAAAACCAG TTTTATTTAT 66035 |||||||||| |||||||||| |||||||| TATCACTTCT TCCAACAAAA AGAAAAAG.. .......... .......... .......... 208 ACATTTATTT TGATATTTAA AGGGGTAGAT GTTATTCTTT TAGATTATCT TGTGGGTGGG 65975 .......... .......... .......... .......... .......... .......... 208 AAGGAGGGAA AATTGAAGAA GGGCAAGAAT GAAAATGCCT TTACTAGGGA TTAGAGTATT 65915 .......... .......... .......... .......... .......... .......... 208 TGAGCAGAGC AATTCTTTTT TTAAAAAAAA TAATAATAAG TACACATGAA GAACTTAGGA 65855 .......... .......... .......... .......... .......... .......... 208 TAGTTCTTTT TAGAATTAGT TTTTCATAGA GAAGGTATGA AATATTAAGT TAGAATTGAA 65795 .......... .......... .......... .......... .......... .......... 208 AAGAAATTGA AGTTTATGAA AGTTTTCTAA TCTGGTAGTA TGCTAAAAAT TCGAGCCTAA 65735 .......... .......... .......... .......... .......... .......... 208 ATTTTGTTTC CTACTGATTC CCTTCCCATG GTTCCCATTG AGCAATTTTC TTGTGTTTTC 65675 .......... .......... .......... .......... .......... .......... 208 TGAAATAGGT TGTTGTTTAT GAATTTGTTA TTTACTTGAT CATTTGAAAC TTTAATGTGC 65615 .......... .......... .......... .......... .......... .......... 208 TTGTATCTGT AAGTAAGTTA TGCTTGGCAA ACATAGTTAA GGGATGATTG ATGGTGGCAC 65555 .......... .......... .......... .......... .......... .......... 208 CCCTGGTGGA CTAGACACGA GCAATTCTGA TTTATATGTT TGTTTTAGGT AGTACCAAGT 65495 .......... .......... .......... .......... .......... .......... 208 TAATACCTAT TGATGTAGTT GAATAGAGCA AAGAAAAGTG TCGTACATTG CTGTGACTTT 65435 .......... .......... .......... .......... .......... .......... 208 TTGTTTTTGT TTAACATCAG AAAGAAATTG CACCTTGTTG GCTCGTATTT CAACAGCAGT 65375 .......... .......... .......... .......... .......... .......... 208 TGTTGCTCCA GTCAACTTAC TTGTCCAGTG TTACTTTGTA GGTTTTACAG TTGACAAGAT 65315 .......... .......... .......... .......... .......... .......... 208 GGTTTACAAA TTTCTTTGTT TTTGTAATTA TGCCAAATAG TTTTGACCTG CTTGATCTAC 65255 .......... .......... .......... .......... .......... .......... 208 TGCCCTTCTG CTTTTAGTAT AAGGGTCAAT ACCAGGAGAC AAATCTTTTC CGTGTAATTG 65195 .......... .......... .......... .......... .......... .......... 208 TATAGAGTAG TGATTTTCCA ATCCATACAT GTAACAGTAA CTTTATAACT TTTACAGTTG 65135 .......... .......... .......... .......... .......... .......... 208 ACGAGTTGGT TTAGATTTTC TGCAGCTATT TTATTCTGGT ACATGTGAAT ATCCATCAAA 65075 .......... .......... .......... .......... .......... .......... 208 GTGAAGCCTG ACCCATGAAC TTCTTCTAGT GCACGTTAAT GTCCATCAAG AAACCTTTCT 65015 .......... .......... .......... .......... .......... .......... 208 TAGGCTGATG GAATTCCTTC CTGTCTTATC TTTTCTGGGA TGTGGATTAT AATCTCCTTT 64955 .......... .......... .......... .......... .......... .......... 208 TAGTTGGCCT TCTGAATGTA CATGATTTTT AATGTGCTTT GTTTTTTTGA GATCTTTCAC 64895 .......... .......... .......... .......... .......... .......... 208 TTGAATATTC AAACTATTTT CCTCGACTAG AAGTTTTTTA GAAACATATC TTTGTTTTGC 64835 .......... .......... .......... .......... .......... .......... 208 TTTATTGGAC ATACTTGCTC ACGAACTTTG ATATCATCAA TAACCTCTTC TTTACAGCTC 64775 .......... .......... .......... .......... .......... .......... 208 AATTATTGTA TTTCACAGCT TTTACTATTG TTTACTAAAC CCGAGGCTCT GTTTGCTTCC 64715 .......... .......... .......... .......... .......... .......... 208 TGTTTAGAGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 64655 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGT CCACCTAGGA AAGATACGGA GGAAGTTGGT GATATAGATG AAGATGCTTT 261 TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 64595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCACTC TTTCAGCTGC TGGAAGAAGA TCTGAAAAAT GATGAGCTAT CCTTGGACGA 321 TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 64535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATATA ACTGAGGAGG ACCTTGCGAA GCTTGAACGT GAATTGGAGG AAGCACTGAA 381 GGATGATGAA CTACTAGGAG AAATTGACTC 64505 |||||||||| |||||||||| |||||||||| GGATGATGAA CTACTAGGAG AAATTGACTC 411 hqPGS_C08HBa0027D09.1-_SGN-E276634+ (66274 66067,64707 64505) ******************************************************************************** EST sequence 56 -strand 695 n (File: SGN-E241731-) 1 ATTCTATTAT TAGATATATA TGAATATTGT GATTATGACT ATGGGTAACT AAGCTACATA 61 ACTATGGTTG TGGGAACCAT GGGTGAATAA TGAGGTAAAA TCTAACTAAA ATAACAATTC 121 TAGAATAGTG TCTTGCATGT ATTGATAATT GTTTTGCTTA GAAGTCTTTT TAACGGATGG 181 TCAACATTAG AACTCGCCTT AGTGCTACTT GCCGGACCAA GAAGGTAGAT AATAGCAAAA 241 GAATTATTAA CATAAATTTA GTGTATACTT TTTGATAGGC TAGTATTGAT TGGTACGAGG 301 TAATAACTTA GTCAAATATC GAATACAATG CTTAATATGA GGTAATGGTA AGGGTTTATA 361 TAGCAACACA CGTAGACGGA CCAAGGTGCG TAGTGATATT TTCTAGATGC AAGACCAAGG 421 ATATAGAAAT ACATAACTTA TTACTTTGTA TGCAAGATAC TAGGAAAGAA TTGTTATAGT 481 TAGAATTATT AAATTAGGAA CTTGTGGAGA ACACTTAAAC CCTAGTTAAT TATATTATTT 541 GATTAAATTC CAACATTTGA ATTTGTTAGT TGCCTACTTA AATTTAGCTA GCTATTTCCA 601 TTCATTTAGA ACTAAAACCC CCCTTTTTAT TGTCTTTGTT TTCTAAAGAA ATAATTGACT 661 AACTAATAGT AATAACAAAT TGAAAATAAC TCTGA Predicted gene structure (within gDNA segment 77175 to 69999): Exon 1 73257 72574 ( 684 n); cDNA 7 693 ( 687 n); score: 0.833 MATCH C08HBa0027D09.1- SGN-E241731- 0.833 684 0.984 C PGS_C08HBa0027D09.1-_SGN-E241731- (73257 72574) Alignment (genomic DNA sequence = upper lines): TTATCTACTA TATTTGAATA TTGTGTTTAT GGCTATGACT AACTAAACTT CATAACTAGG 73198 |||| || ||| |||||| ||||| |||| | ||||| | |||||| || |||||||| | TTATTAGATA TATATGAATA TTGTGATTAT GACTATGGGT AACTAAGCTA CATAACTATG 66 GTTGTGCGAA CCATAGGCAA ATAATGAGAT AAACCCTAAC TAATATAACA ATTCTAGAAC 73138 |||||| ||| |||| || | |||||||| | ||| ||||| ||| |||||| ||||||||| GTTGTGGGAA CCATGGGTGA ATAATGAGGT AAAATCTAAC TAAAATAACA ATTCTAGAAT 126 AGTGTCTTGC ATGTATTAAT AATTCTTTCG CTTAGAAGTC CTTTTAACGG ATGGCCAACG 73078 |||||||||| ||||||| || |||| ||| | |||||||||| ||||||||| |||| |||| AGTGTCTTGC ATGTATTGAT AATTGTTTTG CTTAGAAGTC TTTTTAACGG ATGGTCAACA 186 TTAGAACTCG CCTTAATGCT ACTTGCCGGA CAAAGGAGGT AGATAATAAG AAAAGAATTA 73018 |||||||||| ||||| |||| |||||||||| | ||| |||| |||||||| |||||||||| TTAGAACTCG CCTTAGTGCT ACTTGCCGGA CCAAGAAGGT AGATAATAGC AAAAGAATTA 246 TTAAAATAGA TTTAGTGTAT ACTATCTAAT AGGCTAGTAT TGATTGGTAC AAGGTAATAA 72958 |||| ||| | |||||||||| ||| | | || |||||||||| |||||||||| ||||||||| TTAACATAAA TTTAGTGTAT ACTTTTTGAT AGGCTAGTAT TGATTGGTAC GAGGTAATAA 306 CTTAGTTAAA TATCGAATAC GATGCTT-AT ATGAGGTAAG GATAAGGGTT AGGATAGCAA 72899 |||||| ||| |||||||||| |||||| || ||||||||| | |||||||| ||||||| CTTAGTCAAA TATCGAATAC AATGCTTAAT ATGAGGTAAT GGTAAGGGTT TATATAGCAA 366 CACACGTACC CAGACCAAGG TGCGGAGTGA GATTTTCTAG ATGCCGGATC AAGGATTTAG 72839 |||||||| | |||||||| |||| ||||| ||||||||| |||| || | |||||| ||| CACACGTAGA CGGACCAAGG TGCGTAGTGA TATTTTCTAG ATGCAAGACC AAGGATATAG 426 AAATACATAA CTTATCACTT TGTATGAAAG ATACTAGGAA AGAATTGTTA GAGTTAGAGT 72779 |||||||||| ||||| |||| |||||| ||| |||||||||| |||||||||| ||||||| | AAATACATAA CTTATTACTT TGTATGCAAG ATACTAGGAA AGAATTGTTA TAGTTAGAAT 486 TATCAAGTTA TGAACCTGTG GAAAACACGT AAACCCTAGT TACTTTGACT AATTGATTAA 72719 ||| || ||| |||| |||| || ||||| | |||||||||| || || | | | |||||||| TATTAAATTA GGAACTTGTG GAGAACACTT AAACCCTAGT TAATTATATT ATTTGATTAA 546 A-TCCAACAT TCAAAGTTGT TAAGTGTCTC TGTCAATTTT GTTAATTAAT TTTACTCATT 72660 | |||||||| | || |||| || || || | ||||| | || || | | | ||||| ATTCCAACAT TTGAATTTGT TAGTTGCCTA CTTAAATTTA GCTAGCTATT TCCATTCATT 606 TAGAAATAGA AACCCCC-AT TTATTGTTTT TACTTTCCAA GGAAGTCACT GACCAAACAA 72601 ||||| || | | ||||| | ||||||| || | |||| || ||| | | | ||| || || TAGAACTAAA ACCCCCCTTT TTATTGTCTT TGTTTTCTAA AGAAATAATT GACTAACTAA 666 TAGTAATAAC AGGTTGAAGT TAAGTCT 72574 |||||||||| | ||||| ||| ||| TAGTAATAAC AAATTGAAAA TAACTCT 693 hqPGS_C08HBa0027D09.1-_SGN-E241731- (73257 72574) ******************************************************************************** EST sequence 38 +strand 574 n (File: SGN-E550629+) 1 CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 61 TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 121 CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 181 GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTAAT 241 GATAATCAAA AGTCTAACAA TAAAATGTTT TCTTATACGA TGTCTAACAA TACGGAGTCT 301 AACAATGATC CAGAGTCTTA CCTCAAAAAT GATGTTTTTA GAACTATTTA TAGAAAATAA 361 AAACCTAATT AAACAAGGAC TATATTTGCT GGAAATCTGC CAAAACGCGG CTGGGTCGAC 421 GGACCTCACG ACGGATCGTC GTGGTCACGA CAGACCGTCA TGGACTCCGT TGTCCCATAC 481 TTATGCAATT TCTTTTGCTG CTCTCTTCAT TACCCTCGAC GGCATGTATG ACGGACCGTC 541 GTAGGCACAA CGGTCCGTCG AGGGTCTTCG TTCC Predicted gene structure (within gDNA segment 73245 to 75942): Exon 1 73935 74164 ( 230 n); cDNA 1 230 ( 230 n); score: 0.846 Intron 1 74165 74195 ( 31 n); Pd: 0.697 (s: 0.78), Pa: 0.000 (s: 0.76) Exon 2 74196 74275 ( 80 n); cDNA 231 307 ( 77 n); score: 0.725 Intron 2 74276 75045 ( 770 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.82) Exon 3 75046 75312 ( 267 n); cDNA 308 572 ( 265 n); score: 0.888 MATCH C08HBa0027D09.1+ SGN-E550629+ 0.848 577 1.005 C PGS_C08HBa0027D09.1+_SGN-E550629+ (73935 74164,74196 74275,75046 75312) Alignment (genomic DNA sequence = upper lines): CTTCTAAGAG AAAGAATTAT TAATACATGC ATGACACTAT TCTAGAA-TG TTATTTTAGT 73993 ||| | || |||||||||| |||||||||| | |||||||| ||||||| || |||||||||| CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 60 TAGGGTTTAT CTCATTATTT GCCTATGATT TCCACAACCC TAGTTATGGA GTTTAGTTAC 74053 |||| |||| |||| |||| |||||| || |||||| || |||||||||| ||||||||| TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 120 TCATAGCCAT AAACACAATA TTCAAATATA GTAGATAAGA ATTCATGTAC TTACTTCAAT 74113 ||||| ||| || ||||||| |||||||||| | |||||| |||||||||| ||| ||||| CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 180 GAGAAAAACT AAAATCCAAA AGTTTGCTTG ATTAATCTCC AAAAATCACT TGCAAGAATC 74173 |||||| | | |||||| | ||||| |||| ||| ||| | ||||||||| GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCAC- C......... 230 TCAAAGTAAT CAATAATCTC ACAAAAACTC TAATTATTAT CAAGAATCTC ACAATACAAT 74233 || || | |||| || || ||| | ||| |||||| ||| .......... .......... ..AACAA-T- TAATGATAAT CAAAAGTCTA ACAATAAAAT 266 GTTTACCAAT ACAGAGTTTA ACAATCTAAG AGTCTAACTA TCTGGTGTCT AACCTCAAAA 74293 |||| | || || || || ||||| | |||||||| | | GTTTTCTTAT ACGATGTCTA ACAAT-ACGG AGTCTAACAA TG........ .......... 307 ACAAGTTTTT TCGAACTATT TATAAAAAAA CAAAAACCTA ATTAAACGAG GATTCTAATT 74353 .......... .......... .......... .......... .......... .......... 307 GCTGGATATC TACCAAAACA CGGCTGGGTC GACGGACCTC GCGAAGGACT ATCGTGGTCA 74413 .......... .......... .......... .......... .......... .......... 307 CAACGGACCG TCATGGACTC CGTCATCCCA TACTTGTGCA ATTTCTTCTG CTGCTCTCTT 74473 .......... .......... .......... .......... .......... .......... 307 CATTCCCCTT GACGGCAAGT ATGACGGACC GTCATAGGCA CAACGGTCCG TCGAGGGTCT 74533 .......... .......... .......... .......... .......... .......... 307 TCGTTTCAAA ACACTTCAAC ACTTGGAATC TGGGTACTGG ATCACTTCTC TGAACTTCAT 74593 .......... .......... .......... .......... .......... .......... 307 GACAAACCTG CAGGACGGAC CGTCATAGAC ATGACGGACC GTCACAAGCT TCGTAACCCA 74653 .......... .......... .......... .......... .......... .......... 307 CACTTGGCCA GACTTCCCCA CTTCCTTCAG CAGCTGCACT ACGCTGCCAC CTACGGACCG 74713 .......... .......... .......... .......... .......... .......... 307 TCGCAAGCAC GACGGACCGT CATAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC 74773 .......... .......... .......... .......... .......... .......... 307 AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTGCAAAA TAAAGAGAAA CTTATATAAA 74833 .......... .......... .......... .......... .......... .......... 307 AATTAGCATA AAAAGACTTT TAGACAGACT AAACTTAAGG AAAAAGTATT AATTATACCG 74893 .......... .......... .......... .......... .......... .......... 307 TGAAACCACG GTATATCAAT ATTCACTTGC AAGAATCTCA AAGTAATCAA TAATCTCATA 74953 .......... .......... .......... .......... .......... .......... 307 AAAAGACTAA TGATTATCAA GAATCTCACA ATACAATGTT TACCAATAAG GAATTTTACA 75013 .......... .......... .......... .......... .......... .......... 307 ATCTAAGAGT CTAACCTAAC AGAGTCCAAC CTATCTGCCG TCTAACCTCA AAAATGAGGT 75073 ||| | ||| |||||| ||||||| || .......... .......... .......... ..ATCCAGAG TCTTACCTCA AAAATGATGT 335 ATTTCGAACT ATTTATAAAA AATAAAAAAC CTAATTAAAC AAGGACTTTG TTTGCTGGAA 75133 ||| ||||| ||||||| || ||| |||||| |||||||||| ||||||| | |||||||||| TTTTAGAACT ATTTATAGAA AAT-AAAAAC CTAATTAAAC AAGGACTATA TTTGCTGGAA 394 ATCTGCCAAA ATGCAGCTAG GTTGACGGAC CTCGCGACGG ATCGTCAGGG TCACGACGGA 75193 |||||||||| | || ||| | || ||||||| ||| |||||| |||||| || ||||||| || ATCTGCCAAA ACGCGGCTGG GTCGACGGAC CTCACGACGG ATCGTCGTGG TCACGACAGA 454 CCATCATGGA CTCCGTCGTA CCATACTTGT GCAATTTCTT TTGGTGCTCT TCTTCATTAC 75253 || ||||||| |||||| || |||||||| | |||||||||| ||| ||||| |||||||||| CCGTCATGGA CTCCGTTGTC CCATACTTAT GCAATTTCTT TTGCTGCTC- TCTTCATTAC 513 CCTCGATGGC AAGTACGACG GACCGTCATA GGCACAACGG TCCGTCGAGG GTCTTCGTT 75312 |||||| ||| | ||| |||| ||||||| || |||||||||| |||||||||| ||||||||| CCTCGACGGC ATGTATGACG GACCGTCGTA GGCACAACGG TCCGTCGAGG GTCTTCGTT 572 hqPGS_C08HBa0027D09.1+_SGN-E550629+ (73935 74164,74196 74275,75046 75312) ******************************************************************************** EST sequence 40 +strand 574 n (File: SGN-E550645+) 1 CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 61 TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 121 CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 181 GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTAAT 241 GATAATCAAA AGTCTAACAA TAAAATGTTT TCTTATACGA TGTCTAACAA TACGGAGTCT 301 AACAATGATC CAGAGTCTTA CCTCAAAAAT GATGTTTTTA GAACTATTTA TAGAAAATAA 361 AAACCTAATT AAACAAGGAC TATATTTGCT GGAAATCTGC CAAAACGCGG CTGGGTCGAC 421 GGACCTCACG ACGGATCGTC GTGGTCACGA CAGACCGTCA TGGACTCCGT TGTCCCATAC 481 TTATGCAATT TCTTTTGCTG CTCTCTTCAT TACCCTCGAC GGCATGTATG ACGGACCGTC 541 GTAGGCACAA CGGTCCGACG AGGGTCTTCG TTCC Predicted gene structure (within gDNA segment 73245 to 77444): Exon 1 73935 74164 ( 230 n); cDNA 1 230 ( 230 n); score: 0.846 Intron 1 74165 74195 ( 31 n); Pd: 0.697 (s: 0.78), Pa: 0.000 (s: 0.76) Exon 2 74196 74275 ( 80 n); cDNA 231 307 ( 77 n); score: 0.725 Intron 2 74276 75045 ( 770 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.82) Exon 3 75046 75312 ( 267 n); cDNA 308 572 ( 265 n); score: 0.884 MATCH C08HBa0027D09.1+ SGN-E550645+ 0.847 577 1.005 C PGS_C08HBa0027D09.1+_SGN-E550645+ (73935 74164,74196 74275,75046 75312) Alignment (genomic DNA sequence = upper lines): CTTCTAAGAG AAAGAATTAT TAATACATGC ATGACACTAT TCTAGAA-TG TTATTTTAGT 73993 ||| | || |||||||||| |||||||||| | |||||||| ||||||| || |||||||||| CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 60 TAGGGTTTAT CTCATTATTT GCCTATGATT TCCACAACCC TAGTTATGGA GTTTAGTTAC 74053 |||| |||| |||| |||| |||||| || |||||| || |||||||||| ||||||||| TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 120 TCATAGCCAT AAACACAATA TTCAAATATA GTAGATAAGA ATTCATGTAC TTACTTCAAT 74113 ||||| ||| || ||||||| |||||||||| | |||||| |||||||||| ||| ||||| CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 180 GAGAAAAACT AAAATCCAAA AGTTTGCTTG ATTAATCTCC AAAAATCACT TGCAAGAATC 74173 |||||| | | |||||| | ||||| |||| ||| ||| | ||||||||| GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCAC- C......... 230 TCAAAGTAAT CAATAATCTC ACAAAAACTC TAATTATTAT CAAGAATCTC ACAATACAAT 74233 || || | |||| || || ||| | ||| |||||| ||| .......... .......... ..AACAA-T- TAATGATAAT CAAAAGTCTA ACAATAAAAT 266 GTTTACCAAT ACAGAGTTTA ACAATCTAAG AGTCTAACTA TCTGGTGTCT AACCTCAAAA 74293 |||| | || || || || ||||| | |||||||| | | GTTTTCTTAT ACGATGTCTA ACAAT-ACGG AGTCTAACAA TG........ .......... 307 ACAAGTTTTT TCGAACTATT TATAAAAAAA CAAAAACCTA ATTAAACGAG GATTCTAATT 74353 .......... .......... .......... .......... .......... .......... 307 GCTGGATATC TACCAAAACA CGGCTGGGTC GACGGACCTC GCGAAGGACT ATCGTGGTCA 74413 .......... .......... .......... .......... .......... .......... 307 CAACGGACCG TCATGGACTC CGTCATCCCA TACTTGTGCA ATTTCTTCTG CTGCTCTCTT 74473 .......... .......... .......... .......... .......... .......... 307 CATTCCCCTT GACGGCAAGT ATGACGGACC GTCATAGGCA CAACGGTCCG TCGAGGGTCT 74533 .......... .......... .......... .......... .......... .......... 307 TCGTTTCAAA ACACTTCAAC ACTTGGAATC TGGGTACTGG ATCACTTCTC TGAACTTCAT 74593 .......... .......... .......... .......... .......... .......... 307 GACAAACCTG CAGGACGGAC CGTCATAGAC ATGACGGACC GTCACAAGCT TCGTAACCCA 74653 .......... .......... .......... .......... .......... .......... 307 CACTTGGCCA GACTTCCCCA CTTCCTTCAG CAGCTGCACT ACGCTGCCAC CTACGGACCG 74713 .......... .......... .......... .......... .......... .......... 307 TCGCAAGCAC GACGGACCGT CATAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC 74773 .......... .......... .......... .......... .......... .......... 307 AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTGCAAAA TAAAGAGAAA CTTATATAAA 74833 .......... .......... .......... .......... .......... .......... 307 AATTAGCATA AAAAGACTTT TAGACAGACT AAACTTAAGG AAAAAGTATT AATTATACCG 74893 .......... .......... .......... .......... .......... .......... 307 TGAAACCACG GTATATCAAT ATTCACTTGC AAGAATCTCA AAGTAATCAA TAATCTCATA 74953 .......... .......... .......... .......... .......... .......... 307 AAAAGACTAA TGATTATCAA GAATCTCACA ATACAATGTT TACCAATAAG GAATTTTACA 75013 .......... .......... .......... .......... .......... .......... 307 ATCTAAGAGT CTAACCTAAC AGAGTCCAAC CTATCTGCCG TCTAACCTCA AAAATGAGGT 75073 ||| | ||| |||||| ||||||| || .......... .......... .......... ..ATCCAGAG TCTTACCTCA AAAATGATGT 335 ATTTCGAACT ATTTATAAAA AATAAAAAAC CTAATTAAAC AAGGACTTTG TTTGCTGGAA 75133 ||| ||||| ||||||| || ||| |||||| |||||||||| ||||||| | |||||||||| TTTTAGAACT ATTTATAGAA AAT-AAAAAC CTAATTAAAC AAGGACTATA TTTGCTGGAA 394 ATCTGCCAAA ATGCAGCTAG GTTGACGGAC CTCGCGACGG ATCGTCAGGG TCACGACGGA 75193 |||||||||| | || ||| | || ||||||| ||| |||||| |||||| || ||||||| || ATCTGCCAAA ACGCGGCTGG GTCGACGGAC CTCACGACGG ATCGTCGTGG TCACGACAGA 454 CCATCATGGA CTCCGTCGTA CCATACTTGT GCAATTTCTT TTGGTGCTCT TCTTCATTAC 75253 || ||||||| |||||| || |||||||| | |||||||||| ||| ||||| |||||||||| CCGTCATGGA CTCCGTTGTC CCATACTTAT GCAATTTCTT TTGCTGCTC- TCTTCATTAC 513 CCTCGATGGC AAGTACGACG GACCGTCATA GGCACAACGG TCCGTCGAGG GTCTTCGTT 75312 |||||| ||| | ||| |||| ||||||| || |||||||||| |||| ||||| ||||||||| CCTCGACGGC ATGTATGACG GACCGTCGTA GGCACAACGG TCCGACGAGG GTCTTCGTT 572 hqPGS_C08HBa0027D09.1+_SGN-E550645+ (73935 74164,74196 74275,75046 75312) ******************************************************************************** EST sequence 117 +strand 385 n (File: SGN-E273427+) 1 TTTTGAGCCA AAGAATTATT AATACATGCA AGACACTATT CTAGAATTGT TATTTTAGTT 61 AGGTTTTACC TCAATATTCT CCTATGGTTC CCACAATCCT AGTTATGGAG TTTAGTTAAC 121 CATAGTCATA ATCACAATAT TCAAATATAT CATATAAGAA TTCATGTACT TAATTCAAAG 181 AGAAAGAGTA AAATCTGAGA GTTTTCTTGA TTTATCACAA AAAATCACCA ACAATTAATG 241 ATAATCAAAA GTCTAACAAT AAAATGTTTT CTTATACGAT GTCTAACAAT ACGGAGTCTA 301 ACAATGATCC AGAGTCTTAC CTCAAAAATG ATGTTTTTAG AACTATTTAT AGAAAATAAA 361 AACCTAATTA AACAAGGACT ATATT Predicted gene structure (within gDNA segment 73255 to 77053): Exon 1 73936 74164 ( 229 n); cDNA 1 229 ( 229 n); score: 0.845 Intron 1 74165 74195 ( 31 n); Pd: 0.697 (s: 0.78), Pa: 0.000 (s: 0.76) Exon 2 74196 74275 ( 80 n); cDNA 230 306 ( 77 n); score: 0.725 Intron 2 74276 75045 ( 770 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.82) Exon 3 75046 75125 ( 80 n); cDNA 307 385 ( 79 n); score: 0.850 MATCH C08HBa0027D09.1+ SGN-E273427+ 0.821 389 1.010 C PGS_C08HBa0027D09.1+_SGN-E273427+ (73936 74164,74196 74275,75046 75125) Alignment (genomic DNA sequence = upper lines): TTCTAAGAGA AAGAATTATT AATACATGCA TGACACTATT CTAGAA-TGT TATTTTAGTT 73994 || | || | |||||||||| |||||||||| ||||||||| |||||| ||| |||||||||| TTTTGAGCCA AAGAATTATT AATACATGCA AGACACTATT CTAGAATTGT TATTTTAGTT 60 AGGGTTTATC TCATTATTTG CCTATGATTT CCACAACCCT AGTTATGGAG TTTAGTTACT 74054 ||| |||| | ||| |||| |||||| || |||||| ||| |||||||||| |||||||| AGGTTTTACC TCAATATTCT CCTATGGTTC CCACAATCCT AGTTATGGAG TTTAGTTAAC 120 CATAGCCATA AACACAATAT TCAAATATAG TAGATAAGAA TTCATGTACT TACTTCAATG 74114 ||||| |||| | |||||||| ||||||||| | ||||||| |||||||||| || ||||| | CATAGTCATA ATCACAATAT TCAAATATAT CATATAAGAA TTCATGTACT TAATTCAAAG 180 AGAAAAACTA AAATCCAAAA GTTTGCTTGA TTAATCTCCA AAAATCACTT GCAAGAATCT 74174 ||||| | || ||||| | | |||| ||||| || ||| | | |||||||| AGAAAGAGTA AAATCTGAGA GTTTTCTTGA TTTATCACAA AAAATCAC-C .......... 229 CAAAGTAATC AATAATCTCA CAAAAACTCT AATTATTATC AAGAATCTCA CAATACAATG 74234 || || | | ||| || ||| || | ||| | ||||| |||| .......... .......... .AACAA-T-T AATGATAATC AAAAGTCTAA CAATAAAATG 266 TTTACCAATA CAGAGTTTAA CAATCTAAGA GTCTAACTAT CTGGTGTCTA ACCTCAAAAA 74294 ||| | ||| | || ||| |||| || ||||||| || TTTTCTTATA CGATGTCTAA CAAT-ACGGA GTCTAACAAT G......... .......... 306 CAAGTTTTTT CGAACTATTT ATAAAAAAAC AAAAACCTAA TTAAACGAGG ATTCTAATTG 74354 .......... .......... .......... .......... .......... .......... 306 CTGGATATCT ACCAAAACAC GGCTGGGTCG ACGGACCTCG CGAAGGACTA TCGTGGTCAC 74414 .......... .......... .......... .......... .......... .......... 306 AACGGACCGT CATGGACTCC GTCATCCCAT ACTTGTGCAA TTTCTTCTGC TGCTCTCTTC 74474 .......... .......... .......... .......... .......... .......... 306 ATTCCCCTTG ACGGCAAGTA TGACGGACCG TCATAGGCAC AACGGTCCGT CGAGGGTCTT 74534 .......... .......... .......... .......... .......... .......... 306 CGTTTCAAAA CACTTCAACA CTTGGAATCT GGGTACTGGA TCACTTCTCT GAACTTCATG 74594 .......... .......... .......... .......... .......... .......... 306 ACAAACCTGC AGGACGGACC GTCATAGACA TGACGGACCG TCACAAGCTT CGTAACCCAC 74654 .......... .......... .......... .......... .......... .......... 306 ACTTGGCCAG ACTTCCCCAC TTCCTTCAGC AGCTGCACTA CGCTGCCACC TACGGACCGT 74714 .......... .......... .......... .......... .......... .......... 306 CGCAAGCACG ACGGACCGTC ATAAGCTCCG TAGGTGGTCT CTTCTGCATT TCTTCGCTCA 74774 .......... .......... .......... .......... .......... .......... 306 AAATCTCCGC ATTCAGCTTT GGACAGATTT CCTGCAAAAT AAAGAGAAAC TTATATAAAA 74834 .......... .......... .......... .......... .......... .......... 306 ATTAGCATAA AAAGACTTTT AGACAGACTA AACTTAAGGA AAAAGTATTA ATTATACCGT 74894 .......... .......... .......... .......... .......... .......... 306 GAAACCACGG TATATCAATA TTCACTTGCA AGAATCTCAA AGTAATCAAT AATCTCATAA 74954 .......... .......... .......... .......... .......... .......... 306 AAAGACTAAT GATTATCAAG AATCTCACAA TACAATGTTT ACCAATAAGG AATTTTACAA 75014 .......... .......... .......... .......... .......... .......... 306 TCTAAGAGTC TAACCTAACA GAGTCCAACC TATCTGCCGT CTAACCTCAA AAATGAGGTA 75074 ||| || || ||||||| |||||| || .......... .......... .......... .ATCCAGAGT CTTACCTCAA AAATGATGTT 335 TTTCGAACTA TTTATAAAAA ATAAAAAACC TAATTAAACA AGGACTTTGT T 75125 ||| |||||| |||||| ||| || ||||||| |||||||||| |||||| | | | TTTAGAACTA TTTATAGAAA AT-AAAAACC TAATTAAACA AGGACTATAT T 385 hqPGS_C08HBa0027D09.1+_SGN-E273427+ (73936 74164,74196 74275,75046 75125) ******************************************************************************** EST sequence 332 -strand 758 n (File: SGN-E349968-) 1 AGAATTATTT TTTAGTAGGG TTTACCTCAT TATTCGCCTG TGTTCCCACA ACCNTAGTTA 61 TGGAGTTTAG TTACACATAG TCATAATCAC AATATTCAAA TATGTAATAT AAGAATTCAT 121 GCACTTACTT CAATAAGAAA GAAAATAATC AAGAAGTTCA CTTGATTAAT CAACAAAATC 181 ACCAAAAATT AATTACTAAA ATTAATTGAA GACTAAAGAT TCTCCAAGAG TGTAATAAAA 241 ATTACCAAGT CTAATCCACA AAAGAAGCTA AAATAACCAA AGTCTAACTA TAAGAGAGTC 301 TAATCACCAA AGAGTCTAAA ACTAAAAACA AGGTTTTTCA AATTATTTAT AAAAAACAAA 361 AACCTAATTA GAGAAGGACC CTCTTGGCTG GAAATCTGTC AAAATGCGGC TAGGTCGACG 421 GACCTCGCGA CGGGTCGTCA TGGTCACGAT GGGCCATAAT GGACTCCGAC ATCCCATACC 481 TATGCAAAGT CTTCTGTTGG TCTCTTTATT ATCCACGACG GCAGGTATGA CGGATCATCA 541 CAGGCACAAC GGTCCGTCGA GGGTCTTCAT TCCATAACAC TTGAATTCTT GGAATTTGGG 601 TATTGGGACT ACTTCTTTGA TCTTCATGAC GAACTAGCAG GACAGACCAC CATGGCTACG 661 ACGGTCCGTC ACACTCTCCA TAACCCCACA CTTGGTCAGA CTTCCCCATC TTCCTTCAGC 721 AGCTTCACTA CGATGCCACT TACGGACCGT CACAAGCT Predicted gene structure (within gDNA segment 72884 to 76107): Exon 1 73978 74164 ( 187 n); cDNA 1 183 ( 183 n); score: 0.829 Intron 1 74165 74195 ( 31 n); Pd: 0.697 (s: 0.74), Pa: 0.000 (s: 0.62) Exon 2 74196 74272 ( 77 n); cDNA 184 256 ( 73 n); score: 0.584 Intron 2 74273 74996 ( 724 n); Pd: 0.000 (s: 0.54), Pa: 0.000 (s: 0.60) Exon 3 74997 75497 ( 501 n); cDNA 257 757 ( 501 n); score: 0.797 MATCH C08HBa0027D09.1+ SGN-E349968- 0.784 765 1.009 C PGS_C08HBa0027D09.1+_SGN-E349968- (73978 74164,74196 74272,74997 75497) Alignment (genomic DNA sequence = upper lines): AGAATGTTAT TTTAGTTAGG GTTTATCTCA TTATTTGCCT ATGATTTCCA CAACCCTAGT 74037 ||||| | | ||||| |||| ||||| |||| ||||| |||| || || ||| ||||| |||| AGAATTATTT TTTAG-TAGG GTTTACCTCA TTATTCGCCT GTG-TTCCCA CAACCNTAGT 58 TATGGAGTTT AGTTACTCAT AGCCATAAAC ACAATATTCA AATATAGTAG ATAAGAATTC 74097 |||||||||| |||||| ||| || ||||| | |||||||||| ||||| | |||||||||| TATGGAGTTT AGTTACACAT AGTCATAATC ACAATATTCA AATATGTAAT ATAAGAATTC 118 ATGTACTTAC TTCAATGAGA AAAACTAAAA TCCAAAAGTT TGCTTGATTA ATCTCCAAAA 74157 ||| |||||| |||||| ||| || | | || || | ||||| |||||||| ||| | ||| ATGCACTTAC TTCAATAAGA AAGAAAATAA TCAAGAAGTT CACTTGATTA ATCAAC-AAA 177 ATCACTTGCA AGAATCTCAA AGTAATCAAT AATCTCACAA AAACTCTAAT TATTATCAAG 74217 ||||| || ||| | |||| || || | ATCAC-C... .......... .......... ........AA AAA-T-TAAT TACTAAAATT 203 AATCTCACAA TACAATGTTT ACCAATACAG AGTTTAACAA TCTAAGAGTC TAACTATCTG 74277 ||| | | || || || |||| | | ||| || | |||| ||| AATTGAAGAC TA-AAGATTC TCCAAGAGTG -TAATAAAAA TTACCAAGTC TAATC..... 256 GTGTCTAACC TCAAAAACAA GTTTTTTCGA ACTATTTATA AAAAAACAAA AACCTAATTA 74337 .......... .......... .......... .......... .......... .......... 256 AACGAGGATT CTAATTGCTG GATATCTACC AAAACACGGC TGGGTCGACG GACCTCGCGA 74397 .......... .......... .......... .......... .......... .......... 256 AGGACTATCG TGGTCACAAC GGACCGTCAT GGACTCCGTC ATCCCATACT TGTGCAATTT 74457 .......... .......... .......... .......... .......... .......... 256 CTTCTGCTGC TCTCTTCATT CCCCTTGACG GCAAGTATGA CGGACCGTCA TAGGCACAAC 74517 .......... .......... .......... .......... .......... .......... 256 GGTCCGTCGA GGGTCTTCGT TTCAAAACAC TTCAACACTT GGAATCTGGG TACTGGATCA 74577 .......... .......... .......... .......... .......... .......... 256 CTTCTCTGAA CTTCATGACA AACCTGCAGG ACGGACCGTC ATAGACATGA CGGACCGTCA 74637 .......... .......... .......... .......... .......... .......... 256 CAAGCTTCGT AACCCACACT TGGCCAGACT TCCCCACTTC CTTCAGCAGC TGCACTACGC 74697 .......... .......... .......... .......... .......... .......... 256 TGCCACCTAC GGACCGTCGC AAGCACGACG GACCGTCATA AGCTCCGTAG GTGGTCTCTT 74757 .......... .......... .......... .......... .......... .......... 256 CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT GCAAAATAAA 74817 .......... .......... .......... .......... .......... .......... 256 GAGAAACTTA TATAAAAATT AGCATAAAAA GACTTTTAGA CAGACTAAAC TTAAGGAAAA 74877 .......... .......... .......... .......... .......... .......... 256 AGTATTAATT ATACCGTGAA ACCACGGTAT ATCAATATTC ACTTGCAAGA ATCTCAAAGT 74937 .......... .......... .......... .......... .......... .......... 256 AATCAATAAT CTCATAAAAA GACTAATGAT TATCAAGAAT CTCACAATAC AATGTTTACC 74997 | .......... .......... .......... .......... .......... .........C 257 AATAAGGAAT TTTACA-ATC TAAGAGTCTA AC-CTAACAG AGTCCAACCT ATCTGCCGTC 75055 | || ||| | | | | | || |||||| || ||| || |||| || | ||| ACAAAAGAAG CTAAAATAAC CAA-AGTCTA ACTATAAGAG AGTCTAATCA CCAAAGAGTC 316 TAACCTCAAA AATGAGGTAT TTCGAACTAT TTATAAAAAA TAAAAAACCT AATTAAACAA 75115 ||| ||| || |||| | ||| || ||| |||||||||| |||||||| ||||| | || TAAAACTAAA AACAAGGTTT TTCAAATTAT TTATAAAAAA -CAAAAACCT AATTAGAGAA 375 GGACTTTGTT TGCTGGAAAT CTGCCAAAAT GCAGCTAGGT TGACGGACCT CGCGACGGAT 75175 |||| | || ||||||||| ||| |||||| || ||||||| ||||||||| |||||||| | GGACCCTCTT GGCTGGAAAT CTGTCAAAAT GCGGCTAGGT CGACGGACCT CGCGACGGGT 435 CGTCAGGGTC ACGACGGACC ATCATGGACT CCGTCGTACC ATACTTGTGC AATTTCTTTT 75235 ||||| |||| |||| || || || ||||||| ||| | | || |||| | ||| || |||| | CGTCATGGTC ACGATGGGCC ATAATGGACT CCGACATCCC ATACCTATGC AAAGTCTTCT 495 GGTGCTCTTC TTCATTACCC TCGATGGCAA GTACGACGGA CCGTCATAGG CACAACGGTC 75295 | || || || || |||| || ||| |||| ||| |||||| | ||| ||| |||||||||| GTTGGTC-TC TTTATTATCC ACGACGGCAG GTATGACGGA TCATCACAGG CACAACGGTC 554 CGTCGAGGGT CTTCGTTTCA AAACACTTCA ACTCTTGGAA TCTGGGTACT -GGATTACTT 75354 |||||||||| |||| || || ||||||| | | |||||||| | |||||| | ||| ||||| CGTCGAGGGT CTTCATTCCA TAACACTTGA ATTCTTGGAA TTTGGGTATT GGGACTACTT 614 CTCTGATCTT CATGACGAAC CTGCAGGACG GACCGTCATA TCCACGACAG ACCGTAACAA 75414 || ||||||| |||||||||| ||||||| |||| ||| | ||||| | |||| ||| CTTTGATCTT CATGACGAAC TAGCAGGACA GACCACCATG GCTACGACGG TCCGTCACAC 674 GCTACGTAAC CCCTCACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT TCACTACGCT 75474 || | |||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||| | TCTCCATAAC CCCACACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT TCACTACGAT 734 GCCACCTACG GACCGTCACA AGC 75497 ||||| |||| |||||||||| ||| GCCACTTACG GACCGTCACA AGC 757 hqPGS_C08HBa0027D09.1+_SGN-E349968- (73978 74164,74196 74272,74997 75497) ******************************************************************************** EST sequence 321 -strand 787 n (File: SGN-E369291-) 1 TTTTTTTTTT TTTTTTTTTT TTTTAAAATT CAAAAAGTTT GGTTGATTAA TCACCAATAA 61 TCACTGCAAA GAATCTTAAA GTAATCAACA ATCTCACAAA AAGTGTAATG ATTCTCAAAA 121 GTCTAACAAT ACAGTGTCTA CTAATATGAT GTCTAACAAT ACGGAGTATA ACCTCAAAAA 181 CGAGGTTTTT CGAACTATTT ATAGAAAATA AAAACCTAAC TAAACAAGGA CTCTATTTGC 241 TGGAAATCTG CCAAAACGCG GCTGGGTCGA CAGAACTCAC GACGGATCGT CATGGTCACG 301 ATGGACCGTC ATGGACTCTG TCGTCCCATA CTTATGCAAT TTCTTTTGCT TCTCTCTTCA 361 TTACCCTCGA CGGCAGGTAT GACGGACCGT CATAGGCACA ACGGTCTATC GAGGGTCTTC 421 GTTTCAACAC ACTTGAACTC TTGGAATATG GGTACTGGGA CTACTTCTCT GAACTTCATG 481 ACGAACCTGC AGGACGGACC GTCATGAACT CCGTAGCCCC GCACTTGGTC AGACTTCCCC 541 ATCTTCTTTC AGCAGCTGCA CTACGCTGCC ACCTACAGAC CGTCACAAGC ACGACGGACC 601 GTCATAAGCT CTGTAGGTCG TCTATTCTGC ATTTCTTCAC TCAAAATCTC CGCATTCATC 661 TTTGGACAGA TTTCCTTAAA AAGTAAATCG CTTACTACTG AATGGAGATG CTTGGCGTCG 721 AAAACATTGA GAACATGACC ACCAGTATAT CTTTTTCGTG AGATAAACCT TGCACCATAC 781 GTCCATA Predicted gene structure (within gDNA segment 68599 to 76517): Exon 1 73446 73465 ( 20 n); cDNA 5 24 ( 20 n); score: 0.600 Intron 1 73466 74122 ( 657 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 74123 74256 ( 134 n); cDNA 25 158 ( 134 n); score: 0.806 Intron 2 74257 75045 ( 789 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.84) Exon 3 75046 75589 ( 544 n); cDNA 159 682 ( 524 n); score: 0.867 MATCH C08HBa0027D09.1+ SGN-E369291- 0.855 698 0.887 C PGS_C08HBa0027D09.1+_SGN-E369291- (73446 73465,74123 74256,75046 75589) Alignment (genomic DNA sequence = upper lines): TTATTACTAT TGTTTTGTCG ATTTCCTTGG AAAGTAAAAA CATAAAAAGA GGGTTTATAT 73505 || || | | | |||| | TTTTTTTTTT TTTTTTTTTT .......... .......... .......... .......... 24 TTCTAAATGA GTGAAAATAA ATAACGAACT TGAAAGAGAC ACTTAACAAC TTTGACAGTT 73565 .......... .......... .......... .......... .......... .......... 24 GGATTTTAAT CAATTAATCA AAGTAACTAG GGTTTACGTG TTCCCCGCAG GTTCATAACT 73625 .......... .......... .......... .......... .......... .......... 24 TGATAATATT AACTATATCT TGCATGCAAA GTGATAAGTT ATGTATTTCT AAATCCTTGG 73685 .......... .......... .......... .......... .......... .......... 24 TCCAGCATCT AGAAAATCTC AGTCCGCACC TTGGTCCGGC TACGTGTGTT GCTATCCTAA 73745 .......... .......... .......... .......... .......... .......... 24 CCCTTATCCT TACCTCATAT TGAGCATCGT ATTCGATATT TGACTATGTT ATTACCTCAT 73805 .......... .......... .......... .......... .......... .......... 24 ACCAATCAAT ACTAGCCTAT TAGATAGTAT ACACTAAATC TATGTTAATA ATCTTTTCCT 73865 .......... .......... .......... .......... .......... .......... 24 ATTATCTACC TCCTTGGTCC GACAAGTAGC ATTAAGGCGA GTTCTAACGT TGGCCATCCG 73925 .......... .......... .......... .......... .......... .......... 24 TTAAAAGGAC TTCTAAGAGA AAGAATTATT AATACATGCA TGACACTATT CTAGAATGTT 73985 .......... .......... .......... .......... .......... .......... 24 ATTTTAGTTA GGGTTTATCT CATTATTTGC CTATGATTTC CACAACCCTA GTTATGGAGT 74045 .......... .......... .......... .......... .......... .......... 24 TTAGTTACTC ATAGCCATAA ACACAATATT CAAATATAGT AGATAAGAAT TCATGTACTT 74105 .......... .......... .......... .......... .......... .......... 24 ACTTCAATGA GAAAAACTAA AATCCAAAAG TTTGCTTGAT TAATCTCCAA AAATCACTTG 74165 || | || ||||| |||| ||||| ||||| |||| ||||||| .......... .......AAA ATTCAAAAAG TTTGGTTGAT TAATCACCAA TAATCACTGC 67 CAAGAATCTC AAAGTAATCA ATAATCTCAC AAAAACTCTA ATTATTATCA AGAATCTCAC 74225 |||||||| |||||||||| | |||||||| ||||| | || || ||| ||| | | ||| || AAAGAATCTT AAAGTAATCA ACAATCTCAC AAAAAGTGTA ATGATTCTCA AAAGTCTAAC 127 AATACAATGT TTACCAATAC AGAGTTTAAC AATCTAAGAG TCTAACTATC TGGTGTCTAA 74285 |||||| ||| ||| |||| || |||| | AATACAGTGT CTACTAATAT GATGTCTAAC A......... .......... .......... 158 CCTCAAAAAC AAGTTTTTTC GAACTATTTA TAAAAAAACA AAAACCTAAT TAAACGAGGA 74345 .......... .......... .......... .......... .......... .......... 158 TTCTAATTGC TGGATATCTA CCAAAACACG GCTGGGTCGA CGGACCTCGC GAAGGACTAT 74405 .......... .......... .......... .......... .......... .......... 158 CGTGGTCACA ACGGACCGTC ATGGACTCCG TCATCCCATA CTTGTGCAAT TTCTTCTGCT 74465 .......... .......... .......... .......... .......... .......... 158 GCTCTCTTCA TTCCCCTTGA CGGCAAGTAT GACGGACCGT CATAGGCACA ACGGTCCGTC 74525 .......... .......... .......... .......... .......... .......... 158 GAGGGTCTTC GTTTCAAAAC ACTTCAACAC TTGGAATCTG GGTACTGGAT CACTTCTCTG 74585 .......... .......... .......... .......... .......... .......... 158 AACTTCATGA CAAACCTGCA GGACGGACCG TCATAGACAT GACGGACCGT CACAAGCTTC 74645 .......... .......... .......... .......... .......... .......... 158 GTAACCCACA CTTGGCCAGA CTTCCCCACT TCCTTCAGCA GCTGCACTAC GCTGCCACCT 74705 .......... .......... .......... .......... .......... .......... 158 ACGGACCGTC GCAAGCACGA CGGACCGTCA TAAGCTCCGT AGGTGGTCTC TTCTGCATTT 74765 .......... .......... .......... .......... .......... .......... 158 CTTCGCTCAA AATCTCCGCA TTCAGCTTTG GACAGATTTC CTGCAAAATA AAGAGAAACT 74825 .......... .......... .......... .......... .......... .......... 158 TATATAAAAA TTAGCATAAA AAGACTTTTA GACAGACTAA ACTTAAGGAA AAAGTATTAA 74885 .......... .......... .......... .......... .......... .......... 158 TTATACCGTG AAACCACGGT ATATCAATAT TCACTTGCAA GAATCTCAAA GTAATCAATA 74945 .......... .......... .......... .......... .......... .......... 158 ATCTCATAAA AAGACTAATG ATTATCAAGA ATCTCACAAT ACAATGTTTA CCAATAAGGA 75005 .......... .......... .......... .......... .......... .......... 158 ATTTTACAAT CTAAGAGTCT AACCTAACAG AGTCCAACCT ATCTGCCGTC TAACCTCAAA 75065 || | || |||||||||| .......... .......... .......... .......... ATACGGAGTA TAACCTCAAA 178 AATGAGGTAT TTCGAACTAT TTATAAAAAA TAAAAAACCT AATTAAACAA GGACTTTGTT 75125 || ||||| | |||||||||| ||||| |||| | |||||||| || ||||||| ||||| | || AACGAGGTTT TTCGAACTAT TTATAGAAAA T-AAAAACCT AACTAAACAA GGACTCTATT 237 TGCTGGAAAT CTGCCAAAAT GCAGCTAGGT TGACGGACCT CGCGACGGAT CGTCAGGGTC 75185 |||||||||| ||||||||| || ||| ||| ||| || || | |||||||| ||||| |||| TGCTGGAAAT CTGCCAAAAC GCGGCTGGGT CGACAGAACT CACGACGGAT CGTCATGGTC 297 ACGACGGACC ATCATGGACT CCGTCGTACC ATACTTGTGC AATTTCTTTT GGTGCTCTTC 75245 |||| ||||| ||||||||| | ||||| || |||||| ||| |||||||||| | | ||| || ACGATGGACC GTCATGGACT CTGTCGTCCC ATACTTATGC AATTTCTTTT GCTTCTC-TC 356 TTCATTACCC TCGATGGCAA GTACGACGGA CCGTCATAGG CACAACGGTC CGTCGAGGGT 75305 |||||||||| |||| |||| ||| |||||| |||||||||| |||||||||| |||||||| TTCATTACCC TCGACGGCAG GTATGACGGA CCGTCATAGG CACAACGGTC TATCGAGGGT 416 CTTCGTTTCA AAACACTTCA ACTCTTGGAA TCTGGGTACT -GGATTACTT CTCTGATCTT 75364 |||||||||| | |||||| | |||||||||| | |||||||| ||| ||||| |||||| ||| CTTCGTTTCA ACACACTTGA ACTCTTGGAA TATGGGTACT GGGACTACTT CTCTGAACTT 476 CATGACGAAC CTGCAGGACG GACCGTCATA TCCACGACAG ACCGTAACAA GCTACGTAAC 75424 |||||||||| |||||||||| ||||||| | | | | | | | | | || | | CATGACGAAC CTGCAGGACG GACCGTC--A T----G--A- A-C-T--C-C G-TA-G---C 517 CCCTCACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT TCACTACGCT GCCACCTACG 75484 ||| |||||| |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| CCCGCACTTG GTCAGACTTC CCCATCTTCT TTCAGCAGCT GCACTACGCT GCCACCTACA 577 GACCGTCACA AGCACGACGG ACTGTCATAA GCTCCGTAGG TGGTCTCTTC TGCATTTCTT 75544 |||||||||| |||||||||| || ||||||| |||| ||||| | |||| ||| |||||||||| GACCGTCACA AGCACGACGG ACCGTCATAA GCTCTGTAGG TCGTCTATTC TGCATTTCTT 637 CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTA CAAAA 75589 | |||||||| |||||||||| | |||||||| ||||||||| |||| CACTCAAAAT CTCCGCATTC ATCTTTGGAC AGATTTCCTT AAAAA 682 hqPGS_C08HBa0027D09.1+_SGN-E369291- (74123 74256,75046 75589) ******************************************************************************** EST sequence 147 +strand 737 n (File: SGN-E369290+) 1 TTTTTTTTTT TTTTTTTTTT TTTAAAATCC AAAAGTTTGC TTGATTAATC ACCAATAATC 61 ACTTGCAAGA ATCTTAAAGT AATCAACAAT CTCACAAAAA GTGTAATGAT TCTCAAAAGT 121 CTAACAATAC AGTGTCTACT AATATGATGT CTAACAATAC GGAGTATAAC CTCAAAAACG 181 AGGTTTTTCG AACTATTTAT AGAAAATAAA AACCTAACTA AACAAGGACT CTATTTGCTG 241 GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA CGGATCGTCA TGGTCACGAT 301 GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC TCTCTTCATT 361 ACCCTCGACG GCAGGTATGA CGGACCGTCA TAGGCACAAC GGTCTATCGA GGGTCTTCGT 421 TTCAACACAC TTGAACTCTT GGAATATGGG TACTGGGACT ACTTCTCTGA ACTTCATGAC 481 GAACCTGCAG GACGGACCGT CATGAACTCC GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT 541 CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT 601 CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT 661 TGGACAGATT TCCTTAAAAA GTAAATCGCT TACTACTGAA TGGAGATGCT TGGCGTCGAA 721 AACATTGAGA ACATGAC Predicted gene structure (within gDNA segment 69639 to 77516): Exon 1 73446 73465 ( 20 n); cDNA 3 22 ( 20 n); score: 0.600 Intron 1 73466 74122 ( 657 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 74123 74256 ( 134 n); cDNA 23 156 ( 134 n); score: 0.858 Intron 2 74257 75045 ( 789 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.84) Exon 3 75046 75583 ( 538 n); cDNA 157 674 ( 518 n); score: 0.869 MATCH C08HBa0027D09.1+ SGN-E369290+ 0.867 692 0.939 C PGS_C08HBa0027D09.1+_SGN-E369290+ (73446 73465,74123 74256,75046 75583) Alignment (genomic DNA sequence = upper lines): TTATTACTAT TGTTTTGTCG ATTTCCTTGG AAAGTAAAAA CATAAAAAGA GGGTTTATAT 73505 || || | | | |||| | TTTTTTTTTT TTTTTTTTTT .......... .......... .......... .......... 22 TTCTAAATGA GTGAAAATAA ATAACGAACT TGAAAGAGAC ACTTAACAAC TTTGACAGTT 73565 .......... .......... .......... .......... .......... .......... 22 GGATTTTAAT CAATTAATCA AAGTAACTAG GGTTTACGTG TTCCCCGCAG GTTCATAACT 73625 .......... .......... .......... .......... .......... .......... 22 TGATAATATT AACTATATCT TGCATGCAAA GTGATAAGTT ATGTATTTCT AAATCCTTGG 73685 .......... .......... .......... .......... .......... .......... 22 TCCAGCATCT AGAAAATCTC AGTCCGCACC TTGGTCCGGC TACGTGTGTT GCTATCCTAA 73745 .......... .......... .......... .......... .......... .......... 22 CCCTTATCCT TACCTCATAT TGAGCATCGT ATTCGATATT TGACTATGTT ATTACCTCAT 73805 .......... .......... .......... .......... .......... .......... 22 ACCAATCAAT ACTAGCCTAT TAGATAGTAT ACACTAAATC TATGTTAATA ATCTTTTCCT 73865 .......... .......... .......... .......... .......... .......... 22 ATTATCTACC TCCTTGGTCC GACAAGTAGC ATTAAGGCGA GTTCTAACGT TGGCCATCCG 73925 .......... .......... .......... .......... .......... .......... 22 TTAAAAGGAC TTCTAAGAGA AAGAATTATT AATACATGCA TGACACTATT CTAGAATGTT 73985 .......... .......... .......... .......... .......... .......... 22 ATTTTAGTTA GGGTTTATCT CATTATTTGC CTATGATTTC CACAACCCTA GTTATGGAGT 74045 .......... .......... .......... .......... .......... .......... 22 TTAGTTACTC ATAGCCATAA ACACAATATT CAAATATAGT AGATAAGAAT TCATGTACTT 74105 .......... .......... .......... .......... .......... .......... 22 ACTTCAATGA GAAAAACTAA AATCCAAAAG TTTGCTTGAT TAATCTCCAA AAATCACTTG 74165 ||| |||||||||| |||||||||| ||||| |||| ||||||||| .......... .......TAA AATCCAAAAG TTTGCTTGAT TAATCACCAA TAATCACTTG 65 CAAGAATCTC AAAGTAATCA ATAATCTCAC AAAAACTCTA ATTATTATCA AGAATCTCAC 74225 ||||||||| |||||||||| | |||||||| ||||| | || || ||| ||| | | ||| || CAAGAATCTT AAAGTAATCA ACAATCTCAC AAAAAGTGTA ATGATTCTCA AAAGTCTAAC 125 AATACAATGT TTACCAATAC AGAGTTTAAC AATCTAAGAG TCTAACTATC TGGTGTCTAA 74285 |||||| ||| ||| |||| || |||| | AATACAGTGT CTACTAATAT GATGTCTAAC A......... .......... .......... 156 CCTCAAAAAC AAGTTTTTTC GAACTATTTA TAAAAAAACA AAAACCTAAT TAAACGAGGA 74345 .......... .......... .......... .......... .......... .......... 156 TTCTAATTGC TGGATATCTA CCAAAACACG GCTGGGTCGA CGGACCTCGC GAAGGACTAT 74405 .......... .......... .......... .......... .......... .......... 156 CGTGGTCACA ACGGACCGTC ATGGACTCCG TCATCCCATA CTTGTGCAAT TTCTTCTGCT 74465 .......... .......... .......... .......... .......... .......... 156 GCTCTCTTCA TTCCCCTTGA CGGCAAGTAT GACGGACCGT CATAGGCACA ACGGTCCGTC 74525 .......... .......... .......... .......... .......... .......... 156 GAGGGTCTTC GTTTCAAAAC ACTTCAACAC TTGGAATCTG GGTACTGGAT CACTTCTCTG 74585 .......... .......... .......... .......... .......... .......... 156 AACTTCATGA CAAACCTGCA GGACGGACCG TCATAGACAT GACGGACCGT CACAAGCTTC 74645 .......... .......... .......... .......... .......... .......... 156 GTAACCCACA CTTGGCCAGA CTTCCCCACT TCCTTCAGCA GCTGCACTAC GCTGCCACCT 74705 .......... .......... .......... .......... .......... .......... 156 ACGGACCGTC GCAAGCACGA CGGACCGTCA TAAGCTCCGT AGGTGGTCTC TTCTGCATTT 74765 .......... .......... .......... .......... .......... .......... 156 CTTCGCTCAA AATCTCCGCA TTCAGCTTTG GACAGATTTC CTGCAAAATA AAGAGAAACT 74825 .......... .......... .......... .......... .......... .......... 156 TATATAAAAA TTAGCATAAA AAGACTTTTA GACAGACTAA ACTTAAGGAA AAAGTATTAA 74885 .......... .......... .......... .......... .......... .......... 156 TTATACCGTG AAACCACGGT ATATCAATAT TCACTTGCAA GAATCTCAAA GTAATCAATA 74945 .......... .......... .......... .......... .......... .......... 156 ATCTCATAAA AAGACTAATG ATTATCAAGA ATCTCACAAT ACAATGTTTA CCAATAAGGA 75005 .......... .......... .......... .......... .......... .......... 156 ATTTTACAAT CTAAGAGTCT AACCTAACAG AGTCCAACCT ATCTGCCGTC TAACCTCAAA 75065 || | || |||||||||| .......... .......... .......... .......... ATACGGAGTA TAACCTCAAA 176 AATGAGGTAT TTCGAACTAT TTATAAAAAA TAAAAAACCT AATTAAACAA GGACTTTGTT 75125 || ||||| | |||||||||| ||||| |||| | |||||||| || ||||||| ||||| | || AACGAGGTTT TTCGAACTAT TTATAGAAAA T-AAAAACCT AACTAAACAA GGACTCTATT 235 TGCTGGAAAT CTGCCAAAAT GCAGCTAGGT TGACGGACCT CGCGACGGAT CGTCAGGGTC 75185 |||||||||| ||||||||| || ||| ||| ||| || || | |||||||| ||||| |||| TGCTGGAAAT CTGCCAAAAC GCGGCTGGGT CGACAGAACT CACGACGGAT CGTCATGGTC 295 ACGACGGACC ATCATGGACT CCGTCGTACC ATACTTGTGC AATTTCTTTT GGTGCTCTTC 75245 |||| ||||| ||||||||| | ||||| || |||||| ||| |||||||||| | | ||| || ACGATGGACC GTCATGGACT CTGTCGTCCC ATACTTATGC AATTTCTTTT GCTTCTC-TC 354 TTCATTACCC TCGATGGCAA GTACGACGGA CCGTCATAGG CACAACGGTC CGTCGAGGGT 75305 |||||||||| |||| |||| ||| |||||| |||||||||| |||||||||| |||||||| TTCATTACCC TCGACGGCAG GTATGACGGA CCGTCATAGG CACAACGGTC TATCGAGGGT 414 CTTCGTTTCA AAACACTTCA ACTCTTGGAA TCTGGGTACT -GGATTACTT CTCTGATCTT 75364 |||||||||| | |||||| | |||||||||| | |||||||| ||| ||||| |||||| ||| CTTCGTTTCA ACACACTTGA ACTCTTGGAA TATGGGTACT GGGACTACTT CTCTGAACTT 474 CATGACGAAC CTGCAGGACG GACCGTCATA TCCACGACAG ACCGTAACAA GCTACGTAAC 75424 |||||||||| |||||||||| ||||||| | | | | | | | | |||| | CATGACGAAC CTGCAGGACG GACCGTC--A T----G--A- A-C-T----- -C--CGTAGC 515 CCCTCACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT TCACTACGCT GCCACCTACG 75484 ||| |||||| |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| CCCGCACTTG GTCAGACTTC CCCATCTTCT TTCAGCAGCT GCACTACGCT GCCACCTACA 575 GACCGTCACA AGCACGACGG ACTGTCATAA GCTCCGTAGG TGGTCTCTTC TGCATTTCTT 75544 |||||||||| |||||||||| || ||||||| |||| ||||| | |||| ||| |||||||||| GACCGTCACA AGCACGACGG ACCGTCATAA GCTCTGTAGG TCGTCTATTC TGCATTTCTT 635 CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCT 75583 | |||||||| |||||||||| | |||||||| ||||||||| CACTCAAAAT CTCCGCATTC ATCTTTGGAC AGATTTCCT 674 hqPGS_C08HBa0027D09.1+_SGN-E369290+ (74123 74256,75046 75583) ******************************************************************************** EST sequence 151 +strand 750 n (File: SGN-E546519+) 1 GAGAGAGAGA CTAGTCTCGA GTTTTTTTTT TTTTTTTTTT AAAATCCGAA AGTTTTCTTG 61 ATTAATCACC AACAATCACT TGCAAGAATT TCAAAGTAAT CAAGAATCTC ACAAAAAGTC 121 TAATGATAAT CAAAAGTCTA ACACTAATAC ACAGAGTCTA ATAATTATCC AGAGTCTAAC 181 CTCAAAAATG AGGTTTTTTT GAACTATTTA TAGAAATTAA AAACCTAATT AAATAAGGAC 241 TCTATTTGCT GGAAATTTGT CAAAACGCGG CTGGGTCAAC GGACCTCGCG ACGGATCATC 301 GTGGTCACGA CGGACCGTCA TGGACTCCGT CGTCCCATAC TTGATGAAAT TTCTTCTGCT 361 TCTCTCTTCA TTACCCTCGA CGGCAAGTAT GACGGACCGT CAAAGGCACA ACGGTCCGTC 421 GAGGGTCTTC GTTCCAAAAC ACTTAAACTC TTGGAATATG GGTACTGGGA TTACTTCTCT 481 GAACTTCATG AAGAACCTGC AGGACGGACC GTCATAGACA CGAAGGACCG TCATGGACTC 541 CGTAACCCCA CACTTGGTCA GACTTCCCCA TATTCCTTCA GCAGCTGCAC TATGCTGCCA 601 CCTACGTACC GTCACAAGCA TGACGGACCG TCACAAGCTC CGTAGGTGGT CTCTTCTGCA 661 TTTCTTCACT CAAAAACCTC TGCATACATC TTTGAACAGA TTTCCTTGGA ACTGTTGTGT 721 GGACCTTGAA AACTGACTAT NATTGCCTTG Predicted gene structure (within gDNA segment 70104 to 76209): Exon 1 74123 74233 ( 111 n); cDNA 40 150 ( 111 n); score: 0.856 Intron 1 74234 74952 ( 719 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0) Exon 2 74953 74975 ( 23 n); cDNA 151 173 ( 23 n); score: 0.783 Intron 2 74976 75052 ( 77 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.85) Exon 3 75053 75583 ( 531 n); cDNA 174 706 ( 533 n); score: 0.874 PPA cDNA 39 21 MATCH C08HBa0027D09.1+ SGN-E546519+ 0.871 665 0.887 C PGS_C08HBa0027D09.1+_SGN-E546519+ (74123 74233,74953 74975,75053 75583) Alignment (genomic DNA sequence = upper lines): TAAAATCCAA AAGTTTGCTT GATTAATCTC CAAAAATCAC TTGCAAGAAT CTCAAAGTAA 74182 |||||||| | |||||| ||| |||||||| | ||| |||||| |||||||||| ||||||||| TAAAATCCGA AAGTTTTCTT GATTAATCAC CAACAATCAC TTGCAAGAAT TTCAAAGTAA 99 TCAATAATCT CACAAAAACT CTAATTATTA TCAAGAATCT CACAATACAA TGTTTACCAA 74242 |||| ||||| |||||||| | ||||| || | |||| | ||| ||| || | TCAAGAATCT CACAAAAAGT CTAATGATAA TCAAAAGTCT AACACTAATA C......... 150 TACAGAGTTT AACAATCTAA GAGTCTAACT ATCTGGTGTC TAACCTCAAA AACAAGTTTT 74302 .......... .......... .......... .......... .......... .......... 150 TTCGAACTAT TTATAAAAAA ACAAAAACCT AATTAAACGA GGATTCTAAT TGCTGGATAT 74362 .......... .......... .......... .......... .......... .......... 150 CTACCAAAAC ACGGCTGGGT CGACGGACCT CGCGAAGGAC TATCGTGGTC ACAACGGACC 74422 .......... .......... .......... .......... .......... .......... 150 GTCATGGACT CCGTCATCCC ATACTTGTGC AATTTCTTCT GCTGCTCTCT TCATTCCCCT 74482 .......... .......... .......... .......... .......... .......... 150 TGACGGCAAG TATGACGGAC CGTCATAGGC ACAACGGTCC GTCGAGGGTC TTCGTTTCAA 74542 .......... .......... .......... .......... .......... .......... 150 AACACTTCAA CACTTGGAAT CTGGGTACTG GATCACTTCT CTGAACTTCA TGACAAACCT 74602 .......... .......... .......... .......... .......... .......... 150 GCAGGACGGA CCGTCATAGA CATGACGGAC CGTCACAAGC TTCGTAACCC ACACTTGGCC 74662 .......... .......... .......... .......... .......... .......... 150 AGACTTCCCC ACTTCCTTCA GCAGCTGCAC TACGCTGCCA CCTACGGACC GTCGCAAGCA 74722 .......... .......... .......... .......... .......... .......... 150 CGACGGACCG TCATAAGCTC CGTAGGTGGT CTCTTCTGCA TTTCTTCGCT CAAAATCTCC 74782 .......... .......... .......... .......... .......... .......... 150 GCATTCAGCT TTGGACAGAT TTCCTGCAAA ATAAAGAGAA ACTTATATAA AAATTAGCAT 74842 .......... .......... .......... .......... .......... .......... 150 AAAAAGACTT TTAGACAGAC TAAACTTAAG GAAAAAGTAT TAATTATACC GTGAAACCAC 74902 .......... .......... .......... .......... .......... .......... 150 GGTATATCAA TATTCACTTG CAAGAATCTC AAAGTAATCA ATAATCTCAT AAAAAGACTA 74962 | | || ||| .......... .......... .......... .......... .......... ACAGAGTCTA 160 ATGATTATCA AGAATCTCAC AATACAATGT TTACCAATAA GGAATTTTAC AATCTAAGAG 75022 || |||||| ||| ATAATTATCC AGA....... .......... .......... .......... .......... 173 TCTAACCTAA CAGAGTCCAA CCTATCTGCC GTCTAACCTC AAAAATGAGG -TATTTCGAA 75081 |||||||||| |||||||||| | ||| ||| .......... .......... .......... GTCTAACCTC AAAAATGAGG TTTTTTTGAA 203 CTATTTATAA AAAATAAAAA ACCTAATTAA ACAAGGACTT TGTTTGCTGG AAATCTGCCA 75141 |||||||| | |||| |||| |||||||||| | ||||||| | |||||||| |||| || || CTATTTAT-A GAAATTAAAA ACCTAATTAA ATAAGGACTC TATTTGCTGG AAATTTGTCA 262 AAATGCAGCT AGGTTGACGG ACCTCGCGAC GGATCGTCAG GGTCACGACG GACCATCATG 75201 ||| || ||| ||| |||| |||||||||| ||||| || |||||||||| |||| ||||| AAACGCGGCT GGGTCAACGG ACCTCGCGAC GGATCATCGT GGTCACGACG GACCGTCATG 322 GACTCCGTCG TACCATACTT G-TGCAATTT CTTTTGGTGC TCTTCTTCAT TACCCTCGAT 75260 |||||||||| | |||||||| | || ||||| ||| || | | || ||||||| ||||||||| GACTCCGTCG TCCCATACTT GATGAAATTT CTTCTGCTTC TC-TCTTCAT TACCCTCGAC 381 GGCAAGTACG ACGGACCGTC ATAGGCACAA CGGTCCGTCG AGGGTCTTCG TTTCAAAACA 75320 |||||||| | |||||||||| | |||||||| |||||||||| |||||||||| || ||||||| GGCAAGTATG ACGGACCGTC AAAGGCACAA CGGTCCGTCG AGGGTCTTCG TTCCAAAACA 441 CTTCAACTCT TGGAATCTGG GTACT-GGAT TACTTCTCTG ATCTTCATGA CGAACCTGCA 75379 ||| |||||| |||||| ||| ||||| |||| |||||||||| | |||||||| ||||||||| CTTAAACTCT TGGAATATGG GTACTGGGAT TACTTCTCTG AACTTCATGA AGAACCTGCA 501 GGACGGACCG TCATATCCAC GACAGACCGT AACAAGCTAC GTAACCCCTC ACTTGGTCAG 75439 |||||||||| ||||| ||| || |||||| | || | |||||||| | |||||||||| GGACGGACCG TCATAGACAC GAAGGACCGT CATGGACTCC GTAACCCCAC ACTTGGTCAG 561 ACTTCCCCAT CTTCCTTCAG CAGCTTCACT ACGCTGCCAC CTACGGACCG TCACAAGCAC 75499 |||||||||| ||||||||| ||||| |||| | |||||||| ||||| |||| ||||||||| ACTTCCCCAT ATTCCTTCAG CAGCTGCACT ATGCTGCCAC CTACGTACCG TCACAAGCAT 621 GACGGACTGT CATAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC -AAAATCTCC 75558 ||||||| || || ||||||| |||||||||| |||||||||| |||||| ||| |||| ||| GACGGACCGT CACAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCACTC AAAAACCTCT 681 GCATTCAGCT TTGGACAGAT TTCCT 75583 |||| || || ||| |||||| ||||| GCATACATCT TTGAACAGAT TTCCT 706 hqPGS_C08HBa0027D09.1+_SGN-E546519+ (74123 74233,74953 74975,75053 75583) ******************************************************************************** EST sequence 314 -strand 384 n (File: SGN-E357596-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTA AAATCCAAAA GTTTTCTTGA 61 TTAATCTCCA AAAATCACTT GCAAGAATCT CAAAATCCAA CACTAATACA CAAAGTCTTA 121 GAATATGATG TCTAATATAA TAGAGTCTAA CCTAACAGAG TCCAACAATC TAAGAGTCTA 181 ACAATCTCAG ACTCTAACAA TCTCAGAGTC TAACCTCAAA AACAAGGTTT TTTCGAACTA 241 TTTATAAAAA ACAAAAACCT AATTAAACAA GGATTTTAAT TGCTGGAAAT CTGCAAAATG 301 CGGTTGGGTC GACGGACCTC GCGACGGACC GTCGTGGTCA CTACGGACCG TCATGGACTC 361 CGTCGTCCTA TACTTGTGCA ATTT Predicted gene structure (within gDNA segment 73133 to 75237): Exon 1 74123 74277 ( 155 n); cDNA 39 188 ( 150 n); score: 0.774 Intron 1 74278 75033 ( 756 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.69) Exon 2 75034 75230 ( 197 n); cDNA 189 384 ( 196 n); score: 0.838 PPA cDNA 38 1 MATCH C08HBa0027D09.1+ SGN-E357596- 0.810 352 0.917 C PGS_C08HBa0027D09.1+_SGN-E357596- (74123 74277,75034 75230) Alignment (genomic DNA sequence = upper lines): TAAAATCCAA AAGTTTGCTT GATTAATCTC CAAAAATCAC TTGCAAGAAT CTCAAAGTAA 74182 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||| | TAAAATCCAA AAGTTTTCTT GATTAATCTC CAAAAATCAC TTGCAAGAAT CTCAAA--AT 96 TCAATAATCT CACAAAAACT CTAATTATTA TCAAGAATCT CACAATACAA TGTTTACCAA 74242 ||| | | ||| ||| | || | | || | | | | | |||| | | | ||| | CCAACACTAA TACACAAAGT CTTA-GAATA TGATGTCTAA TATAATAGAG T-CTAACCTA 154 TACAGAGTTT AACAATCTAA GAGTCTAACT ATCTGGTGTC TAACCTCAAA AACAAGTTTT 74302 ||||||| |||||||||| ||||||||| |||| -ACAGAGTCC AACAATCTAA GAGTCTAACA ATCTC..... .......... .......... 188 TTCGAACTAT TTATAAAAAA ACAAAAACCT AATTAAACGA GGATTCTAAT TGCTGGATAT 74362 .......... .......... .......... .......... .......... .......... 188 CTACCAAAAC ACGGCTGGGT CGACGGACCT CGCGAAGGAC TATCGTGGTC ACAACGGACC 74422 .......... .......... .......... .......... .......... .......... 188 GTCATGGACT CCGTCATCCC ATACTTGTGC AATTTCTTCT GCTGCTCTCT TCATTCCCCT 74482 .......... .......... .......... .......... .......... .......... 188 TGACGGCAAG TATGACGGAC CGTCATAGGC ACAACGGTCC GTCGAGGGTC TTCGTTTCAA 74542 .......... .......... .......... .......... .......... .......... 188 AACACTTCAA CACTTGGAAT CTGGGTACTG GATCACTTCT CTGAACTTCA TGACAAACCT 74602 .......... .......... .......... .......... .......... .......... 188 GCAGGACGGA CCGTCATAGA CATGACGGAC CGTCACAAGC TTCGTAACCC ACACTTGGCC 74662 .......... .......... .......... .......... .......... .......... 188 AGACTTCCCC ACTTCCTTCA GCAGCTGCAC TACGCTGCCA CCTACGGACC GTCGCAAGCA 74722 .......... .......... .......... .......... .......... .......... 188 CGACGGACCG TCATAAGCTC CGTAGGTGGT CTCTTCTGCA TTTCTTCGCT CAAAATCTCC 74782 .......... .......... .......... .......... .......... .......... 188 GCATTCAGCT TTGGACAGAT TTCCTGCAAA ATAAAGAGAA ACTTATATAA AAATTAGCAT 74842 .......... .......... .......... .......... .......... .......... 188 AAAAAGACTT TTAGACAGAC TAAACTTAAG GAAAAAGTAT TAATTATACC GTGAAACCAC 74902 .......... .......... .......... .......... .......... .......... 188 GGTATATCAA TATTCACTTG CAAGAATCTC AAAGTAATCA ATAATCTCAT AAAAAGACTA 74962 .......... .......... .......... .......... .......... .......... 188 ATGATTATCA AGAATCTCAC AATACAATGT TTACCAATAA GGAATTTTAC AATCTAAGAG 75022 .......... .......... .......... .......... .......... .......... 188 TCTAACCTAA CAGAGTCCAA CCTATCT-GC CGTCTAACCT CAAAAATGAG G-TATTTCGA 75080 ||| || || | |||| ||||||||| |||||| || | | |||||| .......... .AGACTCTAA -CAATCTCAG AGTCTAACCT CAAAAACAAG GTTTTTTCGA 236 ACTATTTATA AAAAATAAAA AACCTAATTA AACAAGGACT TTGTTTGCTG GAAATCTGCC 75140 |||||||||| ||||| ||| |||||||||| |||||||| | || |||||| |||||||| | ACTATTTATA AAAAA-CAAA AACCTAATTA AACAAGGATT TTAATTGCTG GAAATCTG-C 294 AAAATGCAGC TAGGTTGACG GACCTCGCGA CGGATCGTCA GGGTCACGAC GGACCATCAT 75200 ||||||| | | ||| |||| |||||||||| |||| |||| |||||| || ||||| |||| AAAATGCGGT TGGGTCGACG GACCTCGCGA CGGACCGTCG TGGTCACTAC GGACCGTCAT 354 GGACTCCGTC GTACCATACT TGTGCAATTT 75230 |||||||||| || | ||||| |||||||||| GGACTCCGTC GTCCTATACT TGTGCAATTT 384 hqPGS_C08HBa0027D09.1+_SGN-E357596- (74123 74277,75034 75230) ******************************************************************************** EST sequence 170 -strand 731 n (File: SGN-E261921-) 1 AATATCACTG CAAAAGATCT TAAAGTAATC ACCAATCTCA CAAAAAGTGT AATGATTCTC 61 AAAAGTCTAA CAATACAGTG TCTACTAATA TGATGTCTAA CAATACGGAG TATAACCTCA 121 AAAACGAGGT TTTTCGAACT ATTTATAGAA AATAAAAACC TAACTAAACA AGGACTCTAT 181 TTGCTGGAAA TCTGCCAAAA CGCGGCTGGG TCGACAGAAC TCACGACGGA TCGTCATGGT 241 CACGATGGAC CGTCATGGAC TCTGTCGTCC CATACTTATG CAATTTCTTT TGCTTCTCTC 301 TTCATTACCC TCGACGGCAG GTATGACGGA CCGTCATAGG CACAACGGTC TATCGAGGGT 361 CTTCGTTTCA ACACACTTGA ACTCTTGGAA TATGGGTACT GGGACTACTT CTCTGAACTT 421 CATGACGAAC CTGCAGGACG GACCGTCATG AACTCCGTAG CCCCGCACTT GGTCAGACTT 481 CCCCATCTTC TTTCAGCAGC TGCACTACGC TGCCACCTAC AGACCGTCAC AAGCACGACG 541 GACCGTCATA AGCTCTGTAG GTCGTCTATT CTGCATTTCT TCACTCAAAA TCTCCGCATT 601 CATCTTTGGA CAGATTTCCT TAAAAAGTAA ATCGCTTACT ACTGAATGGA GATGCTTGGC 661 GTCGAAAACA TTGAGAACAT GACCACCAGT ATATCTTTTT CGTGAGATAA ACCTTGCACC 721 ATACGTCCAT A Predicted gene structure (within gDNA segment 71654 to 77293): Exon 1 74155 74256 ( 102 n); cDNA 1 102 ( 102 n); score: 0.765 Intron 1 74257 75045 ( 789 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.84) Exon 2 75046 75589 ( 544 n); cDNA 103 626 ( 524 n); score: 0.867 MATCH C08HBa0027D09.1+ SGN-E261921- 0.851 646 0.884 C PGS_C08HBa0027D09.1+_SGN-E261921- (74155 74256,75046 75589) Alignment (genomic DNA sequence = upper lines): AAAATCACTT GCAAGAATCT CAAAGTAATC AATAATCTCA CAAAAACTCT AATTATTATC 74214 || |||||| || |||| ||||||||| | ||||||| |||||| | | ||| ||| || AATATCACTG CAAAAGATCT TAAAGTAATC ACCAATCTCA CAAAAAGTGT AATGATTCTC 60 AAGAATCTCA CAATACAATG TTTACCAATA CAGAGTTTAA CAATCTAAGA GTCTAACTAT 74274 || | ||| | ||||||| || | ||| |||| || ||| || AAAAGTCTAA CAATACAGTG TCTACTAATA TGATGTCTAA CA........ .......... 102 CTGGTGTCTA ACCTCAAAAA CAAGTTTTTT CGAACTATTT ATAAAAAAAC AAAAACCTAA 74334 .......... .......... .......... .......... .......... .......... 102 TTAAACGAGG ATTCTAATTG CTGGATATCT ACCAAAACAC GGCTGGGTCG ACGGACCTCG 74394 .......... .......... .......... .......... .......... .......... 102 CGAAGGACTA TCGTGGTCAC AACGGACCGT CATGGACTCC GTCATCCCAT ACTTGTGCAA 74454 .......... .......... .......... .......... .......... .......... 102 TTTCTTCTGC TGCTCTCTTC ATTCCCCTTG ACGGCAAGTA TGACGGACCG TCATAGGCAC 74514 .......... .......... .......... .......... .......... .......... 102 AACGGTCCGT CGAGGGTCTT CGTTTCAAAA CACTTCAACA CTTGGAATCT GGGTACTGGA 74574 .......... .......... .......... .......... .......... .......... 102 TCACTTCTCT GAACTTCATG ACAAACCTGC AGGACGGACC GTCATAGACA TGACGGACCG 74634 .......... .......... .......... .......... .......... .......... 102 TCACAAGCTT CGTAACCCAC ACTTGGCCAG ACTTCCCCAC TTCCTTCAGC AGCTGCACTA 74694 .......... .......... .......... .......... .......... .......... 102 CGCTGCCACC TACGGACCGT CGCAAGCACG ACGGACCGTC ATAAGCTCCG TAGGTGGTCT 74754 .......... .......... .......... .......... .......... .......... 102 CTTCTGCATT TCTTCGCTCA AAATCTCCGC ATTCAGCTTT GGACAGATTT CCTGCAAAAT 74814 .......... .......... .......... .......... .......... .......... 102 AAAGAGAAAC TTATATAAAA ATTAGCATAA AAAGACTTTT AGACAGACTA AACTTAAGGA 74874 .......... .......... .......... .......... .......... .......... 102 AAAAGTATTA ATTATACCGT GAAACCACGG TATATCAATA TTCACTTGCA AGAATCTCAA 74934 .......... .......... .......... .......... .......... .......... 102 AGTAATCAAT AATCTCATAA AAAGACTAAT GATTATCAAG AATCTCACAA TACAATGTTT 74994 .......... .......... .......... .......... .......... .......... 102 ACCAATAAGG AATTTTACAA TCTAAGAGTC TAACCTAACA GAGTCCAACC TATCTGCCGT 75054 || | || .......... .......... .......... .......... .......... .ATACGGAGT 111 CTAACCTCAA AAATGAGGTA TTTCGAACTA TTTATAAAAA ATAAAAAACC TAATTAAACA 75114 ||||||||| ||| ||||| |||||||||| |||||| ||| || ||||||| ||| |||||| ATAACCTCAA AAACGAGGTT TTTCGAACTA TTTATAGAAA AT-AAAAACC TAACTAAACA 170 AGGACTTTGT TTGCTGGAAA TCTGCCAAAA TGCAGCTAGG TTGACGGACC TCGCGACGGA 75174 |||||| | | |||||||||| |||||||||| || ||| || | ||| || | || ||||||| AGGACTCTAT TTGCTGGAAA TCTGCCAAAA CGCGGCTGGG TCGACAGAAC TCACGACGGA 230 TCGTCAGGGT CACGACGGAC CATCATGGAC TCCGTCGTAC CATACTTGTG CAATTTCTTT 75234 |||||| ||| ||||| |||| | |||||||| || ||||| | ||||||| || |||||||||| TCGTCATGGT CACGATGGAC CGTCATGGAC TCTGTCGTCC CATACTTATG CAATTTCTTT 290 TGGTGCTCTT CTTCATTACC CTCGATGGCA AGTACGACGG ACCGTCATAG GCACAACGGT 75294 || | ||| | |||||||||| ||||| |||| ||| ||||| |||||||||| |||||||||| TGCTTCTC-T CTTCATTACC CTCGACGGCA GGTATGACGG ACCGTCATAG GCACAACGGT 349 CCGTCGAGGG TCTTCGTTTC AAAACACTTC AACTCTTGGA ATCTGGGTAC T-GGATTACT 75353 | ||||||| |||||||||| || |||||| |||||||||| || ||||||| | ||| |||| CTATCGAGGG TCTTCGTTTC AACACACTTG AACTCTTGGA ATATGGGTAC TGGGACTACT 409 TCTCTGATCT TCATGACGAA CCTGCAGGAC GGACCGTCAT ATCCACGACA GACCGTAACA 75413 ||||||| || |||||||||| |||||||||| |||||||| || | | | | | TCTCTGAACT TCATGACGAA CCTGCAGGAC GGACCGTC-- AT----G--A -A-C-T---- 454 AGCTACGTAA CCCCTCACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC TTCACTACGC 75473 | |||| |||| ||||| |||||||||| |||||||||| ||||||||| | |||||||| --C--CGTAG CCCCGCACTT GGTCAGACTT CCCCATCTTC TTTCAGCAGC TGCACTACGC 510 TGCCACCTAC GGACCGTCAC AAGCACGACG GACTGTCATA AGCTCCGTAG GTGGTCTCTT 75533 |||||||||| ||||||||| |||||||||| ||| |||||| ||||| |||| || |||| || TGCCACCTAC AGACCGTCAC AAGCACGACG GACCGTCATA AGCTCTGTAG GTCGTCTATT 570 CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT ACAAAA 75589 |||||||||| || ||||||| |||||||||| || ||||||| |||||||||| |||| CTGCATTTCT TCACTCAAAA TCTCCGCATT CATCTTTGGA CAGATTTCCT TAAAAA 626 hqPGS_C08HBa0027D09.1+_SGN-E261921- (74155 74256,75046 75589) ******************************************************************************** EST sequence 141 +strand 746 n (File: SGN-E546025+) 1 TTTTTTTTTT TTAATCAATA ATCTCACGAA AAGTCTAATG ATTATCAAGA ATTTTCCAAT 61 ACAATGTTCA CCAATACGAA GTTTTAACAA TCTAAGAGTC TAACTATCAG GTGTCTAACC 121 TCAAAAATGA GGTTTTTCGA ACTATTTATA TAAAAATAAA AACCTAATTA CACAAGAATT 181 CTAATTGGTG GAAATCTGCC AAAACGCGGC TGGGTCGACG GACCATGCGA CGGACCGTCG 241 TGGTCATGAC GGACCGTCAT GGACTCCGTC GTCCCATACT TGTGCACTTT CTTCTGCTGC 301 TCTCTTCATT CCCCTCGACG GCAAGTATGA CGGACTGTCA TAGGCACAAC GGTCTGTCAA 361 GGGTCTTCGT TTCAAAATAC TTCAACTCTC GGAATCTAGG TACTGGATTA CTTCTCTGAA 421 CTCCACGACG AACCTGCAGA ACAGACCGTC ATAGCCATGA CGGACCGTCA CAAGCTTCGT 481 AATCCCACAC TTGGTCAGAC TTCCCCATCT TCCTTCAGCA ACTTCTCTAC ACTGCCACCT 541 ACGGACCGTC ACAAGCACGA CGGACCGTCA TCAGCTCCAT AGGTGGTCTC TTCTGCATTT 601 CTTCTCTCAA AATCTCCGCA TTTGGCTTTG GACAAATTTC ATGATCACTT CAGCTCGCGG 661 CTCAATCCAC ACGTCTGGAT CTTCGGNATT TTTCTTCTTT CTTATGTGTG TTGCCTTGAA 721 TGCCTCAGCT TGAGTTACTG GTCTTC Predicted gene structure (within gDNA segment 72830 to 77413): Exon 1 73455 73465 ( 11 n); cDNA 1 11 ( 11 n); score: 0.636 Intron 1 73466 74179 ( 714 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 74180 74487 ( 308 n); cDNA 12 320 ( 309 n); score: 0.888 Intron 2 74488 75261 ( 774 n); Pd: 0.999 (s: 0.94), Pa: 0.000 (s: 0.92) Exon 3 75262 75581 ( 320 n); cDNA 321 640 ( 320 n); score: 0.909 Intron 3 75582 75863 ( 282 n); Pd: 0.000 (s: 0.92), Pa: 0.612 (s: 0) Exon 4 75864 75879 ( 16 n); cDNA 641 656 ( 16 n); score: 0.625 MATCH C08HBa0027D09.1+ SGN-E546025+ 0.899 655 0.878 C PGS_C08HBa0027D09.1+_SGN-E546025+ (73455 73465,74180 74487,75262 75581,75864 75879) Alignment (genomic DNA sequence = upper lines): TTGTTTTGTC GATTTCCTTG GAAAGTAAAA ACATAAAAAG AGGGTTTATA TTTCTAAATG 73514 || |||| | TTTTTTTTTT T......... .......... .......... .......... .......... 11 AGTGAAAATA AATAACGAAC TTGAAAGAGA CACTTAACAA CTTTGACAGT TGGATTTTAA 73574 .......... .......... .......... .......... .......... .......... 11 TCAATTAATC AAAGTAACTA GGGTTTACGT GTTCCCCGCA GGTTCATAAC TTGATAATAT 73634 .......... .......... .......... .......... .......... .......... 11 TAACTATATC TTGCATGCAA AGTGATAAGT TATGTATTTC TAAATCCTTG GTCCAGCATC 73694 .......... .......... .......... .......... .......... .......... 11 TAGAAAATCT CAGTCCGCAC CTTGGTCCGG CTACGTGTGT TGCTATCCTA ACCCTTATCC 73754 .......... .......... .......... .......... .......... .......... 11 TTACCTCATA TTGAGCATCG TATTCGATAT TTGACTATGT TATTACCTCA TACCAATCAA 73814 .......... .......... .......... .......... .......... .......... 11 TACTAGCCTA TTAGATAGTA TACACTAAAT CTATGTTAAT AATCTTTTCC TATTATCTAC 73874 .......... .......... .......... .......... .......... .......... 11 CTCCTTGGTC CGACAAGTAG CATTAAGGCG AGTTCTAACG TTGGCCATCC GTTAAAAGGA 73934 .......... .......... .......... .......... .......... .......... 11 CTTCTAAGAG AAAGAATTAT TAATACATGC ATGACACTAT TCTAGAATGT TATTTTAGTT 73994 .......... .......... .......... .......... .......... .......... 11 AGGGTTTATC TCATTATTTG CCTATGATTT CCACAACCCT AGTTATGGAG TTTAGTTACT 74054 .......... .......... .......... .......... .......... .......... 11 CATAGCCATA AACACAATAT TCAAATATAG TAGATAAGAA TTCATGTACT TACTTCAATG 74114 .......... .......... .......... .......... .......... .......... 11 AGAAAAACTA AAATCCAAAA GTTTGCTTGA TTAATCTCCA AAAATCACTT GCAAGAATCT 74174 .......... .......... .......... .......... .......... .......... 11 CAAAGTAATC AATAATCTCA CAAAAACTCT AATTATTATC AAGAATCTCA CAATACAATG 74234 ||||| |||||||||| | |||| ||| ||| |||||| |||||| | |||||||||| .....TAATC AATAATCTCA CGAAAAGTCT AATGATTATC AAGAATTTTC CAATACAATG 66 TTTACCAATA CAGAG-TTTA ACAATCTAAG AGTCTAACTA TCTGGTGTCT AACCTCAAAA 74293 || ||||||| | || |||| |||||||||| |||||||||| || ||||||| |||||||||| TTCACCAATA CGAAGTTTTA ACAATCTAAG AGTCTAACTA TCAGGTGTCT AACCTCAAAA 126 ACAAGTTTTT TCGAACTATT TATAAAAAAA CAAAAACCTA ATTAAACGAG GATTCTAATT 74353 | || |||| |||||||||| |||| ||||| ||||||||| |||| || || ||||||||| ATGAGGTTTT TCGAACTATT TATATAAAAA TAAAAACCTA ATTACACAAG AATTCTAATT 186 GCTGGATATC TACCAAAACA CGGCTGGGTC GACGGACCTC GCGAAGGACT ATCGTGGTCA 74413 | |||| ||| | ||||||| |||||||||| |||||||| |||| |||| ||||||||| GGTGGAAATC TGCCAAAACG CGGCTGGGTC GACGGACCAT GCGACGGACC GTCGTGGTCA 246 CAACGGACCG TCATGGACTC CGTCATCCCA TACTTGTGCA ATTTCTTCTG CTGCTCTCTT 74473 |||||||| |||||||||| |||| ||||| |||||||||| ||||||||| |||||||||| TGACGGACCG TCATGGACTC CGTCGTCCCA TACTTGTGCA CTTTCTTCTG CTGCTCTCTT 306 CATTCCCCTT GACGGCAAGT ATGACGGACC GTCATAGGCA CAACGGTCCG TCGAGGGTCT 74533 ||||||||| |||| CATTCCCCTC GACG...... .......... .......... .......... .......... 320 TCGTTTCAAA ACACTTCAAC ACTTGGAATC TGGGTACTGG ATCACTTCTC TGAACTTCAT 74593 .......... .......... .......... .......... .......... .......... 320 GACAAACCTG CAGGACGGAC CGTCATAGAC ATGACGGACC GTCACAAGCT TCGTAACCCA 74653 .......... .......... .......... .......... .......... .......... 320 CACTTGGCCA GACTTCCCCA CTTCCTTCAG CAGCTGCACT ACGCTGCCAC CTACGGACCG 74713 .......... .......... .......... .......... .......... .......... 320 TCGCAAGCAC GACGGACCGT CATAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC 74773 .......... .......... .......... .......... .......... .......... 320 AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTGCAAAA TAAAGAGAAA CTTATATAAA 74833 .......... .......... .......... .......... .......... .......... 320 AATTAGCATA AAAAGACTTT TAGACAGACT AAACTTAAGG AAAAAGTATT AATTATACCG 74893 .......... .......... .......... .......... .......... .......... 320 TGAAACCACG GTATATCAAT ATTCACTTGC AAGAATCTCA AAGTAATCAA TAATCTCATA 74953 .......... .......... .......... .......... .......... .......... 320 AAAAGACTAA TGATTATCAA GAATCTCACA ATACAATGTT TACCAATAAG GAATTTTACA 75013 .......... .......... .......... .......... .......... .......... 320 ATCTAAGAGT CTAACCTAAC AGAGTCCAAC CTATCTGCCG TCTAACCTCA AAAATGAGGT 75073 .......... .......... .......... .......... .......... .......... 320 ATTTCGAACT ATTTATAAAA AATAAAAAAC CTAATTAAAC AAGGACTTTG TTTGCTGGAA 75133 .......... .......... .......... .......... .......... .......... 320 ATCTGCCAAA ATGCAGCTAG GTTGACGGAC CTCGCGACGG ATCGTCAGGG TCACGACGGA 75193 .......... .......... .......... .......... .......... .......... 320 CCATCATGGA CTCCGTCGTA CCATACTTGT GCAATTTCTT TTGGTGCTCT TCTTCATTAC 75253 .......... .......... .......... .......... .......... .......... 320 CCTCGATGGC AAGTACGACG GACCGTCATA GGCACAACGG TCCGTCGAGG GTCTTCGTTT 75313 || ||||| |||| ||| |||||| |||||||||| || ||| ||| |||||||||| ........GC AAGTATGACG GACTGTCATA GGCACAACGG TCTGTCAAGG GTCTTCGTTT 372 CAAAACACTT CAACTCTTGG AATCTGGGTA CTGGATTACT TCTCTGATCT TCATGACGAA 75373 ||||| |||| ||||||| || ||||| |||| |||||||||| ||||||| || || |||||| CAAAATACTT CAACTCTCGG AATCTAGGTA CTGGATTACT TCTCTGAACT CCACGACGAA 432 CCTGCAGGAC GGACCGTCAT ATCCACGACA GACCGTAACA AGCTACGTAA CCCCTCACTT 75433 ||||||| || ||||||||| | ||| ||| |||||| ||| |||| ||||| ||| ||||| CCTGCAGAAC AGACCGTCAT AGCCATGACG GACCGTCACA AGCTTCGTAA TCCCACACTT 492 GGTCAGACTT CCCCATCTTC CTTCAGCAGC TTCACTACGC TGCCACCTAC GGACCGTCAC 75493 |||||||||| |||||||||| |||||||| | ||| |||| | |||||||||| |||||||||| GGTCAGACTT CCCCATCTTC CTTCAGCAAC TTCTCTACAC TGCCACCTAC GGACCGTCAC 552 AAGCACGACG GACTGTCATA AGCTCCGTAG GTGGTCTCTT CTGCATTTCT TCGCTCAAAA 75553 |||||||||| ||| ||||| |||||| ||| |||||||||| |||||||||| || ||||||| AAGCACGACG GACCGTCATC AGCTCCATAG GTGGTCTCTT CTGCATTTCT TCTCTCAAAA 612 TCTCCGCATT CAGCTTTGGA CAGATTTCCT ACAAAACAAA GAGAAACTTA TATAAAAATT 75613 |||||||||| |||||||| || ||||| TCTCCGCATT TGGCTTTGGA CAAATTTC.. .......... .......... .......... 640 AGCACAAAAA AGTCTTTTGG ACACACTAAA CTTAAGGAAA AAGTATTAAT TATACCGTGA 75673 .......... .......... .......... .......... .......... .......... 640 AACCACGGTA TATCAACACC CTCAACTTAA ATTCGTTGTT TGTCCTCAAG CGACGCACTA 75733 .......... .......... .......... .......... .......... .......... 640 TGACACACTA CACAATCTTT GTACAATAGT ATCCATGTTT TATCCTTTTC AATATTTGCC 75793 .......... .......... .......... .......... .......... .......... 640 TATCAATCTC GATTAATCTC ATCAAATCTA CGCGTGCTAT CACTATTAGG CTTCAATTGT 75853 .......... .......... .......... .......... .......... .......... 640 GTGGGATCAG AACATGACAT AGGCTC 75879 | || || | |||| .......... ATGATCACTT CAGCTC 656 hqPGS_C08HBa0027D09.1+_SGN-E546025+ (74180 74487,75262 75581) ******************************************************************************** EST sequence 145 +strand 783 n (File: SGN-E546250+) 1 TTTTTTTTTT TTGAGAAAAA ATAAAATTCA GAAATTTACT TGATTAATCG ACAAAATCAC 61 CAACAATCAA CTCCAGAGAA AAGTGTAATA ATAAAAATAA TCTCCTCACA AAGAATATAA 121 CATAAAAGTG TCTAATAACT AAGAGTCTAA CCCCAAAAAT GAGGTTTTTT GAACTATTTT 181 TTTAAAAAAT AAAAATCTAA TCAAAGAAGG ACTCTATTTG TTGAAAATCT GTCGAAACGC 241 GATTTGGTCG ACGGACCTCG GGACGGGTCG TCGTGGTCAC GACGGGTCAT CATGGACTCC 301 GTCGTCCCAT ACTTGGCGAA TTCTTCTGCT GCTGTCTTCA TTACGCTCGG CGGCAGGTAT 361 GACGGATTGT CACATGCATA ATTTCTCTGA CTACTTCTCT GATCTTCACG ACGAACCAGC 421 AGGACGGACC GTCATGGTTA CGACGGTCCG TCACGCACTC CGTAACCCAC ACTTGGTCAG 481 ACTTCCCCAT CTTCCTTCAG CAGCTTCACT ACGATGCCAC CTATGGACCG TTACAGGCAC 541 GACGGACCGT TACAAGCTCC GTAGGTGGTA CTTTTCTGCA GTTTTTGCTC AAAAACTTCC 601 GCGTTCATCT TTAGACAAAT TTCCTGGACG GGTCTGTTAC AGATCTGTCT TTGACAAACT 661 CAAAATTTCA AAAGTTTCAC CGGAGCTCAC TTGTTCAGAG TCTCGCCTAG AGATGCTTGG 721 TTGTTGGAGC TTGTGTTGCT CTCCTCATCG GCTGTCGTTG CTGCTGCTTT TGGTTGTTTT 781 GTC Predicted gene structure (within gDNA segment 70840 to 78782): Exon 1 73060 73066 ( 7 n); cDNA 107 113 ( 7 n); score: 0.714 Intron 1 73067 74247 (1181 n); Pd: 0.120 (s: 0), Pa: 0.232 (s: 0.68) Exon 2 74248 74314 ( 67 n); cDNA 114 179 ( 66 n); score: 0.739 Intron 2 74315 75085 ( 771 n); Pd: 0.000 (s: 0.77), Pa: 0.000 (s: 0.82) Exon 3 75086 75296 ( 211 n); cDNA 180 386 ( 207 n); score: 0.787 Intron 3 75297 75344 ( 48 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.88) Exon 4 75345 75583 ( 239 n); cDNA 387 625 ( 239 n); score: 0.837 PPA cDNA 12 1 MATCH C08HBa0027D09.1+ SGN-E546250+ 0.804 524 0.669 C PGS_C08HBa0027D09.1+_SGN-E546250+ (73060 73066,74248 74314,75086 75296,75345 75583) Alignment (genomic DNA sequence = upper lines): CATTAAGGCG AGTTCTAACG TTGGCCATCC GTTAAAAGGA CTTCTAAGCG AAAGAATTAT 73119 || ||| CACAAAG... .......... .......... .......... .......... .......... 113 TAATACATGC AAGACACTGT TCTAGAATTG TTATATTAGT TAGGGTTTAT CTCATTATTT 73179 .......... .......... .......... .......... .......... .......... 113 GCCTATGGTT CGCACAACCC TAGTTATGAA GTTTAGTTAG TCATAGCCAT AAACACAATA 73239 .......... .......... .......... .......... .......... .......... 113 TTCAAATATA GTAGATAAGA ATTCATGTAC TTACTTCAAT GAGAGAGAGT AAAATCCAAA 73299 .......... .......... .......... .......... .......... .......... 113 AGTTTGCTTG ATTAATCACC AATATTTGAT ACGCTCAAAC TTACTTCTCA AATAAGAAGT 73359 .......... .......... .......... .......... .......... .......... 113 AAAGTGGTTG TGTCAAGTAA ATAACCCAAC TAGTGAGGTT GGGATCGTTC CCACGAGGAA 73419 .......... .......... .......... .......... .......... .......... 113 AATAGTCTAG ACTTAACTTC AACCTGTTAT TACTATTGTT TTGTCGATTT CCTTGGAAAG 73479 .......... .......... .......... .......... .......... .......... 113 TAAAAACATA AAAAGAGGGT TTATATTTCT AAATGAGTGA AAATAAATAA CGAACTTGAA 73539 .......... .......... .......... .......... .......... .......... 113 AGAGACACTT AACAACTTTG ACAGTTGGAT TTTAATCAAT TAATCAAAGT AACTAGGGTT 73599 .......... .......... .......... .......... .......... .......... 113 TACGTGTTCC CCGCAGGTTC ATAACTTGAT AATATTAACT ATATCTTGCA TGCAAAGTGA 73659 .......... .......... .......... .......... .......... .......... 113 TAAGTTATGT ATTTCTAAAT CCTTGGTCCA GCATCTAGAA AATCTCAGTC CGCACCTTGG 73719 .......... .......... .......... .......... .......... .......... 113 TCCGGCTACG TGTGTTGCTA TCCTAACCCT TATCCTTACC TCATATTGAG CATCGTATTC 73779 .......... .......... .......... .......... .......... .......... 113 GATATTTGAC TATGTTATTA CCTCATACCA ATCAATACTA GCCTATTAGA TAGTATACAC 73839 .......... .......... .......... .......... .......... .......... 113 TAAATCTATG TTAATAATCT TTTCCTATTA TCTACCTCCT TGGTCCGACA AGTAGCATTA 73899 .......... .......... .......... .......... .......... .......... 113 AGGCGAGTTC TAACGTTGGC CATCCGTTAA AAGGACTTCT AAGAGAAAGA ATTATTAATA 73959 .......... .......... .......... .......... .......... .......... 113 CATGCATGAC ACTATTCTAG AATGTTATTT TAGTTAGGGT TTATCTCATT ATTTGCCTAT 74019 .......... .......... .......... .......... .......... .......... 113 GATTTCCACA ACCCTAGTTA TGGAGTTTAG TTACTCATAG CCATAAACAC AATATTCAAA 74079 .......... .......... .......... .......... .......... .......... 113 TATAGTAGAT AAGAATTCAT GTACTTACTT CAATGAGAAA AACTAAAATC CAAAAGTTTG 74139 .......... .......... .......... .......... .......... .......... 113 CTTGATTAAT CTCCAAAAAT CACTTGCAAG AATCTCAAAG TAATCAATAA TCTCACAAAA 74199 .......... .......... .......... .......... .......... .......... 113 ACTCTAATTA TTATCAAGAA TCTCACAATA CAATGTTTAC CAATACAGAG TTTAACAATC 74259 | | ||||| | .......... .......... .......... .......... ........AA TATAACA-TA 124 TAAGAGTCTA ACTATCT-GG TGTCTAACCT CAAAAACAAG TTTTTTCGAA CTATTTATAA 74318 ||| ||||| | || || | |||||||| |||||| || ||||| ||| |||||| AAAGTGTCTA A-TAACTAAG AGTCTAACCC CAAAAATGAG GTTTTTTGAA CTATTT.... 179 AAAAACAAAA ACCTAATTAA ACGAGGATTC TAATTGCTGG ATATCTACCA AAACACGGCT 74378 .......... .......... .......... .......... .......... .......... 179 GGGTCGACGG ACCTCGCGAA GGACTATCGT GGTCACAACG GACCGTCATG GACTCCGTCA 74438 .......... .......... .......... .......... .......... .......... 179 TCCCATACTT GTGCAATTTC TTCTGCTGCT CTCTTCATTC CCCTTGACGG CAAGTATGAC 74498 .......... .......... .......... .......... .......... .......... 179 GGACCGTCAT AGGCACAACG GTCCGTCGAG GGTCTTCGTT TCAAAACACT TCAACACTTG 74558 .......... .......... .......... .......... .......... .......... 179 GAATCTGGGT ACTGGATCAC TTCTCTGAAC TTCATGACAA ACCTGCAGGA CGGACCGTCA 74618 .......... .......... .......... .......... .......... .......... 179 TAGACATGAC GGACCGTCAC AAGCTTCGTA ACCCACACTT GGCCAGACTT CCCCACTTCC 74678 .......... .......... .......... .......... .......... .......... 179 TTCAGCAGCT GCACTACGCT GCCACCTACG GACCGTCGCA AGCACGACGG ACCGTCATAA 74738 .......... .......... .......... .......... .......... .......... 179 GCTCCGTAGG TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC 74798 .......... .......... .......... .......... .......... .......... 179 AGATTTCCTG CAAAATAAAG AGAAACTTAT ATAAAAATTA GCATAAAAAG ACTTTTAGAC 74858 .......... .......... .......... .......... .......... .......... 179 AGACTAAACT TAAGGAAAAA GTATTAATTA TACCGTGAAA CCACGGTATA TCAATATTCA 74918 .......... .......... .......... .......... .......... .......... 179 CTTGCAAGAA TCTCAAAGTA ATCAATAATC TCATAAAAAG ACTAATGATT ATCAAGAATC 74978 .......... .......... .......... .......... .......... .......... 179 TCACAATACA ATGTTTACCA ATAAGGAATT TTACAATCTA AGAGTCTAAC CTAACAGAGT 75038 .......... .......... .......... .......... .......... .......... 179 CCAACCTATC TGCCGTCTAA CCTCAAAAAT GAGGTATTTC GAACTATTTA TAAAAAATAA 75098 || |||||||| | .......... .......... .......... .......... .......TTT TAAAAAAT-A 191 AAAACCTAAT TAAACAAGGA CTTTGTTTGC TGGAAATCTG CCAAAATGCA GCTAGGTTGA 75158 |||| ||||| ||| ||||| || | |||| || ||||||| | ||| || | ||| || AAAATCTAAT CAAAGAAGGA CTCTATTTGT TGAAAATCTG TCGAAACGCG ATTTGGTCGA 251 CGGACCTCGC GACGGATCGT CAGGGTCACG ACGGACCATC ATGGACTCCG TCGTACCATA 75218 ||||||||| ||||| |||| | ||||||| |||| |||| |||||||||| |||| ||||| CGGACCTCGG GACGGGTCGT CGTGGTCACG ACGGGTCATC ATGGACTCCG TCGTCCCATA 311 CTTGTGCAAT TTCTTTTGGT GCTCTTCTTC ATTACCCTCG ATGGCAAGTA CGACGGACCG 75278 |||| || | ||||| || | ||| ||||| ||||| |||| |||| ||| |||||| | CTTG-GCGAA TTCTTCTGCT GCT-GTCTTC ATTACGCTCG GCGGCAGGTA TGACGGATTG 369 TCATAGGCAC AACGGTCCGT CGAGGGTCTT CGTTTCAAAA CACTTCAACT CTTGGAATCT 75338 ||| | ||| || || TCACATGCAT AA-TTTCT.. .......... .......... .......... .......... 386 GGGTACTGGA TTACTTCTCT GATCTTCATG ACGAACCTGC AGGACGGACC GTCATATCCA 75398 || ||||||||| |||||||| | ||||||| || |||||||||| ||||| | ......CTGA CTACTTCTCT GATCTTCACG ACGAACCAGC AGGACGGACC GTCATGGTTA 440 CGACAGACCG TAACAAGCTA CGTAACCCCT CACTTGGTCA GACTTCCCCA TCTTCCTTCA 75458 |||| | ||| | || || ||||| ||| |||||||||| |||||||||| |||||||||| CGACGGTCCG TCACGCACTC CGTAA-CCCA CACTTGGTCA GACTTCCCCA TCTTCCTTCA 499 GCAGCTTCAC TACGCTGCCA CCTACGGACC GTCACAAGCA CGACGGACTG TCATAAGCTC 75518 |||||||||| |||| ||||| |||| ||||| || ||| ||| |||||||| | | | |||||| GCAGCTTCAC TACGATGCCA CCTATGGACC GTTACAGGCA CGACGGACCG TTACAAGCTC 559 CGTAGGTGGT -CTCTTCTGC ATTTCTTCGC TCAAAATC-T CCGCATTCAG CTTTGGACAG 75576 |||||||||| || |||||| | || || || |||||| | | |||| |||| |||| |||| CGTAGGTGGT ACTTTTCTGC AGTT-TTTGC TCAAAAACTT CCGCGTTCAT CTTTAGACAA 618 ATTTCCT 75583 ||||||| ATTTCCT 625 hqPGS_C08HBa0027D09.1+_SGN-E546250+ (74248 74314,75086 75296,75345 75583) ******************************************************************************** EST sequence 25 +strand 673 n (File: SGN-E352282+) 1 GACGGGCCGT CATGGCCTCC GTCGTCCCAT ACTTCACATA TTCTTCTTCT TCTATCTTCA 61 TTACCCTCAA CAAACAGGTA TGACAGACTG TTCCAAGAAC GATGGTCTGT CGAGGGTCTC 121 CGTTCCATAA TACTTTAACT TATTTGAATT TGGGTACTGG GAGTACTCTC TGATCATTAT 181 GATGAACCAG CAGGATGGAC CGTTGTGGCA ATGACGGTCC GTCATGGACT TCCGTAATCC 241 CACACTAGGT CATACTTCCC CATCTTCCTT CAGCAACTTC TCTTCTCACT ATGATGACAC 301 CTATGGACCG TCACAGACTC GACGGATCGT CATAAGCTCC GTAGGTGGTC TCTGCTGCAT 361 TTATCACTCA AAAACTTCTG CGTTCATCTT TGGACAGATA ACCTGTAAAT AAGTAGAAAC 421 TGACATAAAA ATCAATACAA AAAGGCTTTT GGACACACAC TAAACTTAAG GAAAAAGCAT 481 TAAAAATACC GTGAAACCAC GGTACATCAA CACCCTCAAC TTAAATTTGT TGTTTGTCCT 541 CAAGTGACAC ACTATGACTC ACTACAAAAT CTTTGTACNA GAGTATCTAT ATTTTAGCGT 601 TCGCAATCAT TTGACTATCA ATCCCAATCA TTCTCATCAT GTTTATGCAT GTTATCACTA 661 TTATGCTTGA ATT Predicted gene structure (within gDNA segment 70494 to 77623): Exon 1 74416 74695 ( 280 n); cDNA 2 285 ( 284 n); score: 0.721 Intron 1 74696 75464 ( 769 n); Pd: 0.000 (s: 0.75), Pa: 0.000 (s: 0.82) Exon 2 75465 75851 ( 387 n); cDNA 286 673 ( 388 n); score: 0.814 MATCH C08HBa0027D09.1+ SGN-E352282+ 0.775 667 0.991 C PGS_C08HBa0027D09.1+_SGN-E352282+ (74416 74695,75465 75851) Alignment (genomic DNA sequence = upper lines): ACGGACCGTC ATGGACTCCG TCATCCCATA CTTGTGCAAT TTCTTCTGCT GCTCTCTTCA 74475 |||| ||||| |||| ||||| || ||||||| ||| || ||||||| || || |||||| ACGGGCCGTC ATGGCCTCCG TCGTCCCATA CTT-CACATA TTCTTCTTCT TCTATCTTCA 60 TTCCCCTTGA C-GGCAAGTA TGACGGACCG TCATAGGCAC AACGGTCCGT CGAGGGTCTT 74534 || |||| | | || ||| |||| ||| | | | | || | |||| || ||||||||| TTACCCTCAA CAAACAGGTA TGACAGACTG TTCCAAGAAC GATGGTCTGT CGAGGGTCTC 120 CGTTTCAAAA CACTTCAAC- ACTTGGAATC TGGGTACT-G GATCACTTCT CTGAACTTCA 74592 |||| || || |||| ||| || |||| |||||||| | || || ||| |||| | | | CGTTCCATAA TACTTTAACT TATTTGAATT TGGGTACTGG GAGTAC-TCT CTGATCATTA 179 TGACAAACCT GCAGGACGGA CCGTCATAGA CATGACGGAC CGTCACAAGC TT-CGTAA-C 74650 ||| |||| |||||| ||| |||| | | ||||||| | ||||| | || ||||| | TGATGAACCA GCAGGATGGA CCGTTGTGGC AATGACGGTC CGTCATGGAC TTCCGTAATC 239 CCACACTTGG CCAGACTTCC CCA-CTTCCT TCAGCAGCTG CACTACGCTG CCACCTACGG 74709 ||||||| || || |||||| ||| |||||| |||||| || | || | CCACACTAGG TCATACTTCC CCATCTTCCT TCAGCAACTT CTCTTC.... .......... 285 ACCGTCGCAA GCACGACGGA CCGTCATAAG CTCCGTAGGT GGTCTCTTCT GCATTTCTTC 74769 .......... .......... .......... .......... .......... .......... 285 GCTCAAAATC TCCGCATTCA GCTTTGGACA GATTTCCTGC AAAATAAAGA GAAACTTATA 74829 .......... .......... .......... .......... .......... .......... 285 TAAAAATTAG CATAAAAAGA CTTTTAGACA GACTAAACTT AAGGAAAAAG TATTAATTAT 74889 .......... .......... .......... .......... .......... .......... 285 ACCGTGAAAC CACGGTATAT CAATATTCAC TTGCAAGAAT CTCAAAGTAA TCAATAATCT 74949 .......... .......... .......... .......... .......... .......... 285 CATAAAAAGA CTAATGATTA TCAAGAATCT CACAATACAA TGTTTACCAA TAAGGAATTT 75009 .......... .......... .......... .......... .......... .......... 285 TACAATCTAA GAGTCTAACC TAACAGAGTC CAACCTATCT GCCGTCTAAC CTCAAAAATG 75069 .......... .......... .......... .......... .......... .......... 285 AGGTATTTCG AACTATTTAT AAAAAATAAA AAACCTAATT AAACAAGGAC TTTGTTTGCT 75129 .......... .......... .......... .......... .......... .......... 285 GGAAATCTGC CAAAATGCAG CTAGGTTGAC GGACCTCGCG ACGGATCGTC AGGGTCACGA 75189 .......... .......... .......... .......... .......... .......... 285 CGGACCATCA TGGACTCCGT CGTACCATAC TTGTGCAATT TCTTTTGGTG CTCTTCTTCA 75249 .......... .......... .......... .......... .......... .......... 285 TTACCCTCGA TGGCAAGTAC GACGGACCGT CATAGGCACA ACGGTCCGTC GAGGGTCTTC 75309 .......... .......... .......... .......... .......... .......... 285 GTTTCAAAAC ACTTCAACTC TTGGAATCTG GGTACTGGAT TACTTCTCTG ATCTTCATGA 75369 .......... .......... .......... .......... .......... .......... 285 CGAACCTGCA GGACGGACCG TCATATCCAC GACAGACCGT AACAAGCTAC GTAACCCCTC 75429 .......... .......... .......... .......... .......... .......... 285 ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG CAGCTTCACT ACGCTGCCAC CTACGGACCG 75489 ||||| | | || ||| ||| |||||| .......... .......... .......... .....TCACT ATGATGACAC CTATGGACCG 310 TCACAAGCAC GACGGACTGT CATAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC 75549 ||||| | | |||||| || |||||||||| |||||||||| ||| |||||| || || ||| TCACAGACTC GACGGATCGT CATAAGCTCC GTAGGTGGTC TCTGCTGCAT TT-ATCACTC 369 AAAATC-TCC GCATTCAGCT TTGGACAGAT TTCCTACAAA ACAAAGAGAA ACTTATATAA 75608 |||| | || || |||| || |||||||||| ||| || | || |||| ||| | |||| AAAAACTTCT GCGTTCATCT TTGGACAGAT AACCT-GTAA ATAAGTAGAA ACTGACATAA 428 AAATTAGCAC AAAAAAGTCT TTTGG--ACA CACTAAACTT AAGGAAAAAG TATTAATTAT 75666 |||| | || |||||| || ||||| ||| |||||||||| |||||||||| ||||| || AAATCAATAC -AAAAAGGCT TTTGGACACA CACTAAACTT AAGGAAAAAG CATTAAAAAT 487 ACCGTGAAAC CACGGTATAT CAACACCCTC AACTTAAATT CGTTGTTTGT CCTCAAGCGA 75726 |||||||||| ||||||| || |||||||||| |||||||||| ||||||||| ||||||| || ACCGTGAAAC CACGGTACAT CAACACCCTC AACTTAAATT TGTTGTTTGT CCTCAAGTGA 547 CGCACTATGA CACACTACAC AATCTTTGTA CAATAGTATC CATGTTTTAT CCTTTTCAAT 75786 | |||||||| | ||||||| |||||||||| | | |||||| || ||||| | || |||| CACACTATGA CTCACTACAA AATCTTTGTA CNAGAGTATC TATATTTTAG CGTTCGCAAT 607 -ATTTGCCTA TCAATCTCGA TTAATCTCAT CAAATCTACG CGTGCTATCA CTATTAGGCT 75845 ||||| ||| |||||| | | | | |||||| || | || | | || ||||| |||||| ||| CATTTGACTA TCAATCCCAA TCATTCTCAT CATGTTTATG CATGTTATCA CTATTATGCT 667 TCAATT 75851 | |||| TGAATT 673 hqPGS_C08HBa0027D09.1+_SGN-E352282+ (74416 74695,75465 75851) ******************************************************************************** EST sequence 60 +strand 522 n (File: SGN-E243969+) 1 GGAAATCTGC CAAAACGCGG CTTGGTCGAC GGACCACGCG ACGGACCGTC GTGGACTCTG 61 TCGTCCCATA CTTGGTGCAA TTTCTTCTGC TGCTTTCTTC ATTCCCCTCG ACGGCAAGTG 121 TAACGGACCG TCATAGGTAC AACGGTCTGT CGAGGGTCTT CGTTTCAAAA TACTTCAACT 181 CTTGGAATCT GGGTACTGGG ATCACTTCTC TGATCTTCAC GACGAACCTG CAGGACGGAC 241 CGTCATAGCC ATGACGGACC GTCACAAGCT TCGTAATCCC ACACTTGGTC AGACTTCCCC 301 ATCTTCCTTC AGCAGCTTCT CTACGCTACC ACCTACGGAC CGTCACAAGC ACGACAGACC 361 TTCAAAAGCT CCGTAGGTGG TCTCTTCTGC ATTTTTTTGC TCAAAATCTC CGCTTTCAGC 421 TTTTGACAGA TTTCCTGCAA AACAAAGAGA AACTTATATC AAAATTAGCA CAAAAAAGGC 481 TTTCGGACAC TTTAAACTTA AGGCAAAAGT ATTAATTATA CC Predicted gene structure (within gDNA segment 73217 to 76675): Exon 1 74449 74487 ( 39 n); cDNA 75 113 ( 39 n); score: 0.949 Intron 1 74488 75261 ( 774 n); Pd: 0.999 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 75262 75669 ( 408 n); cDNA 114 522 ( 409 n); score: 0.915 MATCH C08HBa0027D09.1+ SGN-E243969+ 0.915 447 0.856 C PGS_C08HBa0027D09.1+_SGN-E243969+ (74449 74487,75262 75669) Alignment (genomic DNA sequence = upper lines): GTGCAATTTC TTCTGCTGCT CTCTTCATTC CCCTTGACGG CAAGTATGAC GGACCGTCAT 74508 |||||||||| |||||||||| ||||||||| |||| |||| GTGCAATTTC TTCTGCTGCT TTCTTCATTC CCCTCGACG. .......... .......... 113 AGGCACAACG GTCCGTCGAG GGTCTTCGTT TCAAAACACT TCAACACTTG GAATCTGGGT 74568 .......... .......... .......... .......... .......... .......... 113 ACTGGATCAC TTCTCTGAAC TTCATGACAA ACCTGCAGGA CGGACCGTCA TAGACATGAC 74628 .......... .......... .......... .......... .......... .......... 113 GGACCGTCAC AAGCTTCGTA ACCCACACTT GGCCAGACTT CCCCACTTCC TTCAGCAGCT 74688 .......... .......... .......... .......... .......... .......... 113 GCACTACGCT GCCACCTACG GACCGTCGCA AGCACGACGG ACCGTCATAA GCTCCGTAGG 74748 .......... .......... .......... .......... .......... .......... 113 TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 74808 .......... .......... .......... .......... .......... .......... 113 CAAAATAAAG AGAAACTTAT ATAAAAATTA GCATAAAAAG ACTTTTAGAC AGACTAAACT 74868 .......... .......... .......... .......... .......... .......... 113 TAAGGAAAAA GTATTAATTA TACCGTGAAA CCACGGTATA TCAATATTCA CTTGCAAGAA 74928 .......... .......... .......... .......... .......... .......... 113 TCTCAAAGTA ATCAATAATC TCATAAAAAG ACTAATGATT ATCAAGAATC TCACAATACA 74988 .......... .......... .......... .......... .......... .......... 113 ATGTTTACCA ATAAGGAATT TTACAATCTA AGAGTCTAAC CTAACAGAGT CCAACCTATC 75048 .......... .......... .......... .......... .......... .......... 113 TGCCGTCTAA CCTCAAAAAT GAGGTATTTC GAACTATTTA TAAAAAATAA AAAACCTAAT 75108 .......... .......... .......... .......... .......... .......... 113 TAAACAAGGA CTTTGTTTGC TGGAAATCTG CCAAAATGCA GCTAGGTTGA CGGACCTCGC 75168 .......... .......... .......... .......... .......... .......... 113 GACGGATCGT CAGGGTCACG ACGGACCATC ATGGACTCCG TCGTACCATA CTTGTGCAAT 75228 .......... .......... .......... .......... .......... .......... 113 TTCTTTTGGT GCTCTTCTTC ATTACCCTCG ATGGCAAGTA CGACGGACCG TCATAGGCAC 75288 |||||| |||||||| ||||||| || .......... .......... .......... ...GCAAGTG TAACGGACCG TCATAGGTAC 140 AACGGTCCGT CGAGGGTCTT CGTTTCAAAA CACTTCAACT CTTGGAATCT GGGTACT-GG 75347 ||||||| || |||||||||| |||||||||| ||||||||| |||||||||| ||||||| || AACGGTCTGT CGAGGGTCTT CGTTTCAAAA TACTTCAACT CTTGGAATCT GGGTACTGGG 200 ATTACTTCTC TGATCTTCAT GACGAACCTG CAGGACGGAC CGTCATATCC ACGACAGACC 75407 || ||||||| ||||||||| |||||||||| |||||||||| ||||||| || | ||| |||| ATCACTTCTC TGATCTTCAC GACGAACCTG CAGGACGGAC CGTCATAGCC ATGACGGACC 260 GTAACAAGCT ACGTAACCCC TCACTTGGTC AGACTTCCCC ATCTTCCTTC AGCAGCTTCA 75467 || ||||||| ||||| ||| ||||||||| |||||||||| |||||||||| ||||||||| GTCACAAGCT TCGTAATCCC ACACTTGGTC AGACTTCCCC ATCTTCCTTC AGCAGCTTCT 320 CTACGCTGCC ACCTACGGAC CGTCACAAGC ACGACGGACT GTCATAAGCT CCGTAGGTGG 75527 ||||||| || |||||||||| |||||||||| ||||| ||| ||| ||||| |||||||||| CTACGCTACC ACCTACGGAC CGTCACAAGC ACGACAGACC TTCAAAAGCT CCGTAGGTGG 380 TCTCTTCTGC ATTTCTTCGC TCAAAATCTC CGCATTCAGC TTTGGACAGA TTTCCTACAA 75587 |||||||||| |||| || || |||||||||| ||| |||||| ||| |||||| |||||| ||| TCTCTTCTGC ATTTTTTTGC TCAAAATCTC CGCTTTCAGC TTTTGACAGA TTTCCTGCAA 440 AACAAAGAGA AACTTATATA AAAATTAGCA CAAAAAAGTC TTTTGGACAC ACTAAACTTA 75647 |||||||||| ||||||||| |||||||||| |||||||| | ||| |||||| |||||||| AACAAAGAGA AACTTATATC AAAATTAGCA CAAAAAAGGC TTTCGGACAC TTTAAACTTA 500 AGGAAAAAGT ATTAATTATA CC 75669 ||| |||||| |||||||||| || AGGCAAAAGT ATTAATTATA CC 522 hqPGS_C08HBa0027D09.1+_SGN-E243969+ (74449 74487,75262 75669) ******************************************************************************** EST sequence 320 -strand 767 n (File: SGN-E546251-) 1 CTGCTGCTGT CTTCATTACG CTCGGCGGCA GGTATGACGG ATTGTCACAT GCATAATTTC 61 TCTGACTACT TCTCTGATCT TCACGACGAA CCAGCAGGAC GGACCGTCAT GGTTACGACG 121 GTCCGTCACG CACTTCCGTA ACCCACACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 181 TTCACTACGA TGCCACCTAT GGACCGTTAC AGGCACGACG GACCGTTACA AGCTCCGTAG 241 GTGGTACTTT TCTGCAGTTT TTGCTCAAAA ACTTCCGCGT TCATCTTTAG ACAAATTTCC 301 TGGACGGGTC TGTTACAGAT CTGTCTTTGA CAAACTCAAA ATTTCAAAAG TTTCACCGGA 361 GCTCACTTGT TCAGAGTCTC GCCTAGAGAT GCTTGGTTGT TGGAGCTTGT GTTGCTCTCC 421 TCATCGGCTG TCGTTGCTGC TGCTTTTGGT TGTTTTGTCG GAGACAAGGA GAAGAGGAGA 481 GGAGTTGAGC GACGTTGCCT CACCACTGCT ACTGGTGTTT CTGTCCGGAT GCTGGTTGCT 541 GCTTCTCGTT GCTTTCACCG AGCTGCTGTC CACAGAATAA GAGCAGAGGC AGCCAGCGCC 601 TGCTGGTTCC TGCACTGTTG CTCCTCTACC GGAGGAGAAG AGAAAAAATG AGAGGGAGCG 661 AAGGCGAAGA GAAGAGAGGG GAGGAACAGA GGGACGGAGG AAGGTGGCCA CCTCTGCCTT 721 CGCGGCGTTT TGCCGGAGCA AGGAGAGAGG AGGGGTAGCG GCTGCTT Predicted gene structure (within gDNA segment 73480 to 81852): Exon 1 74579 74808 ( 230 n); cDNA 70 302 ( 233 n); score: 0.826 Intron 1 74809 75116 ( 308 n); Pd: 0.000 (s: 0.79), Pa: 0.507 (s: 0) Exon 2 75117 75140 ( 24 n); cDNA 303 325 ( 23 n); score: 0.625 Intron 2 75141 75731 ( 591 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 75732 75753 ( 22 n); cDNA 326 345 ( 20 n); score: 0.727 Intron 3 75754 76752 ( 999 n); Pd: 0.638 (s: 0), Pa: 0.916 (s: 0) Exon 4 76753 76773 ( 21 n); cDNA 346 366 ( 21 n); score: 0.619 MATCH C08HBa0027D09.1+ SGN-E546251- 0.826 297 0.387 C PGS_C08HBa0027D09.1+_SGN-E546251- (74579 74808,75117 75140,75732 75753,76753 76773) Alignment (genomic DNA sequence = upper lines): TTCTCTGAAC TTCATGACAA ACCTGCAGGA CGGACCGTCA TAGACATGAC GGACCGTCAC 74638 |||||||| | |||| ||| | ||| |||||| |||||||||| | | | ||| || ||||||| TTCTCTGATC TTCACGACGA ACCAGCAGGA CGGACCGTCA TGGTTACGAC GGTCCGTCAC 129 AAGCTT-CGT AACCCACACT TGGCCAGACT TCCCCA-CTT CCTTCAGCAG CTGCACTACG 74696 ||| ||| |||||||||| ||| |||||| |||||| ||| |||||||||| || ||||||| GCACTTCCGT AACCCACACT TGGTCAGACT TCCCCATCTT CCTTCAGCAG CTTCACTACG 189 CTGCCACCTA CGGACCGTCG CAAGCACGAC GGACCGTCAT AAGCTCCGTA GGTGGT-CTC 74755 ||||||||| ||||||| || ||||||| ||||||| | |||||||||| |||||| || ATGCCACCTA TGGACCGTTA CAGGCACGAC GGACCGTTAC AAGCTCCGTA GGTGGTACTT 249 TTCTGCATTT CTTCGCTCAA AATC-TCCGC ATTCAGCTTT GGACAGATTT CCTGCAAAAT 74814 ||||||| || || |||||| || | ||||| |||| |||| |||| |||| |||| TTCTGCAGTT -TTTGCTCAA AAACTTCCGC GTTCATCTTT AGACAAATTT CCTG...... 302 AAAGAGAAAC TTATATAAAA ATTAGCATAA AAAGACTTTT AGACAGACTA AACTTAAGGA 74874 .......... .......... .......... .......... .......... .......... 302 AAAAGTATTA ATTATACCGT GAAACCACGG TATATCAATA TTCACTTGCA AGAATCTCAA 74934 .......... .......... .......... .......... .......... .......... 302 AGTAATCAAT AATCTCATAA AAAGACTAAT GATTATCAAG AATCTCACAA TACAATGTTT 74994 .......... .......... .......... .......... .......... .......... 302 ACCAATAAGG AATTTTACAA TCTAAGAGTC TAACCTAACA GAGTCCAACC TATCTGCCGT 75054 .......... .......... .......... .......... .......... .......... 302 CTAACCTCAA AAATGAGGTA TTTCGAACTA TTTATAAAAA ATAAAAAACC TAATTAAACA 75114 .......... .......... .......... .......... .......... .......... 302 AGGACTTTGT TTGCTGGAAA TCTGCCAAAA TGCAGCTAGG TTGACGGACC TCGCGACGGA 75174 ||| || || | | | |||| | ..GAC-GGGT CTGTTACAGA TCTGTC.... .......... .......... .......... 325 TCGTCAGGGT CACGACGGAC CATCATGGAC TCCGTCGTAC CATACTTGTG CAATTTCTTT 75234 .......... .......... .......... .......... .......... .......... 325 TGGTGCTCTT CTTCATTACC CTCGATGGCA AGTACGACGG ACCGTCATAG GCACAACGGT 75294 .......... .......... .......... .......... .......... .......... 325 CCGTCGAGGG TCTTCGTTTC AAAACACTTC AACTCTTGGA ATCTGGGTAC TGGATTACTT 75354 .......... .......... .......... .......... .......... .......... 325 CTCTGATCTT CATGACGAAC CTGCAGGACG GACCGTCATA TCCACGACAG ACCGTAACAA 75414 .......... .......... .......... .......... .......... .......... 325 GCTACGTAAC CCCTCACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT TCACTACGCT 75474 .......... .......... .......... .......... .......... .......... 325 GCCACCTACG GACCGTCACA AGCACGACGG ACTGTCATAA GCTCCGTAGG TGGTCTCTTC 75534 .......... .......... .......... .......... .......... .......... 325 TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTA CAAAACAAAG 75594 .......... .......... .......... .......... .......... .......... 325 AGAAACTTAT ATAAAAATTA GCACAAAAAA GTCTTTTGGA CACACTAAAC TTAAGGAAAA 75654 .......... .......... .......... .......... .......... .......... 325 AGTATTAATT ATACCGTGAA ACCACGGTAT ATCAACACCC TCAACTTAAA TTCGTTGTTT 75714 .......... .......... .......... .......... .......... .......... 325 GTCCTCAAGC GACGCACTAT GACACACTAC ACAATCTTTG TACAATAGTA TCCATGTTTT 75774 | | |||| ||| | | ||| || .......... .......TTT GACAAACT-C AAAAT-TTC. .......... .......... 345 ATCCTTTTCA ATATTTGCCT ATCAATCTCG ATTAATCTCA TCAAATCTAC GCGTGCTATC 75834 .......... .......... .......... .......... .......... .......... 345 ACTATTAGGC TTCAATTGTG TGGGATCAGA ACATGACATA GGCTCACCAT GCATTAACAC 75894 .......... .......... .......... .......... .......... .......... 345 CTATCCTCTT CAATTTCTCA CCGAGGTGCT AACAATTCCG GTATTGCAAC TAGTGTCCTC 75954 .......... .......... .......... .......... .......... .......... 345 ACTTTAAAAC AAAATCCTCA TTTTTCACAC AATGATTTCA GTTCGAGTAT AAAGATTACT 76014 .......... .......... .......... .......... .......... .......... 345 TTTCAACACT CGCTCTCAGA ACAAAGTCAC ACTCATTCAT ACCTATTGCC ATAAGTTTGC 76074 .......... .......... .......... .......... .......... .......... 345 CCTTATTTTC ACTGCCTTAA GTTCGCTATA CAACCCTTAG GATCACGATA GGACTTTCTT 76134 .......... .......... .......... .......... .......... .......... 345 AGCTAGGAAC ATAGGCTCAG GCTCAGGTAG GGTGTATTTA GGTATACTTT AGTGACTTTT 76194 .......... .......... .......... .......... .......... .......... 345 TGCCCTCCTT GACATATCGA CTAAACCTTC CACTTTCTAT TATTTGATCT CGCCCAATTT 76254 .......... .......... .......... .......... .......... .......... 345 CTCATATTCT TTCACCTTTT TTTCTCTTCT TTCATCATTT GTGTAAGTGA CTCTCTTCTT 76314 .......... .......... .......... .......... .......... .......... 345 TTCTTGCTTG TATTTCTTAT ATATTTTCTT TTTCTTTACT TTTGTTTTAA CTAATTCTTG 76374 .......... .......... .......... .......... .......... .......... 345 AGTCACTTTA CTTTTGTTCT TTCAACCCCA CTTTCCAGAG CATTCCTCAT AATAGCCACC 76434 .......... .......... .......... .......... .......... .......... 345 CTCAAACTCA TGGCTTTGCA TGAGACAAGG TACACAATAC CCAAAGTTGG GTCAGGGCCA 76494 .......... .......... .......... .......... .......... .......... 345 TAACAAAGGT TGTTTACTGC ATTAGCCACC CTCAACTTAT GCTTTTGGCA TAAGCTGAGG 76554 .......... .......... .......... .......... .......... .......... 345 TGCACATGTC CAAGGAGGGA CCAGGGCCAA CACATTGTTC CCAGAAAAGA TCAGTTGGGG 76614 .......... .......... .......... .......... .......... .......... 345 TGTAAAAGAA AGGTCTATTT TAAGCTCAGA TCATTTGGAT CAAAGAAGGA TAAATTTCAT 76674 .......... .......... .......... .......... .......... .......... 345 TTGGTTTTCT TTTATTTAGG CTAGAAATGG GCTATATTGA ATAAGGGCCT ATGATCCTTT 76734 .......... .......... .......... .......... .......... .......... 345 CCTAATTGTC TATTACAGCT TACTTTCAGC AGGGCTAAC 76773 | ||||| | | ||| || .......... ........AA AAGTTTCACC GGAGCTCAC 366 hqPGS_C08HBa0027D09.1+_SGN-E546251- (74579 74808,75117 75140,75732 75753) ******************************************************************************** EST sequence 189 -strand 624 n (File: SGN-E336039-) 1 ACCGTCATAA GCTCCGTAGG TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCTACATTC 61 ATCTTTGGAC AGATTTCTGT GAAACCACGT TATATCAACT GTCCATCACG CACTCCGTAA 121 CCCCATGCTT GGTCAGAATT CTCCATCTTC TTTCAGCAGC TGCGCTACGA TACCATCTAC 181 GGATCTTCAC GAGCACGACG AACCGTCACA ATCTCCGTAG GTGGTAGTTT TCTATATTTC 241 TTGCTAAAAA ACCTCCGTAT TCATCTTTTA GACAAATTTC CTCCCATTTC TGGTTGGAGC 301 CTACTCGTCT ATCGCATGTT CTCGCTGCTG CTTGCTGCTG TCGGAGCTGG TGGCCGGAGT 361 TTTGCTGTTG CTGCTCCTAA TCCTGCAAAA AGAAGAGGAA CGAGAGGTGG AGGGAGATGG 421 CTTGGCGTCG ACTACTGGCT GTCCTTGCCT GTGGAGCTGC TCGCTGCTCT CCTCGCCTCC 481 ACTGGAGAGA ATGGGGTAAC GAGAGGAGGG GGGACGGCAG CTACCTGGCT CTTCGCCAGT 541 TGCTGCTGCC CACCGGTGGT GTTTGGAGCC GCTGGAATTG AGAAGACGAG AGGAGGAGGA 601 GCAACGGAGG AGTTGGAGGC GGAT Predicted gene structure (within gDNA segment 74119 to 81091): Exon 1 74729 74805 ( 77 n); cDNA 1 77 ( 77 n); score: 0.961 Intron 1 74806 74891 ( 86 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 74892 74911 ( 20 n); cDNA 78 97 ( 20 n); score: 0.900 Intron 2 74912 75400 ( 489 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.74) Exon 3 75401 75587 ( 187 n); cDNA 98 286 ( 189 n); score: 0.751 Intron 3 75588 77994 (2407 n); Pd: 0.000 (s: 0.71), Pa: 0.850 (s: 0.57) Exon 4 77995 78038 ( 44 n); cDNA 287 330 ( 44 n); score: 0.568 MATCH C08HBa0027D09.1+ SGN-E336039- 0.812 328 0.526 C PGS_C08HBa0027D09.1+_SGN-E336039- (74729 74805,74892 74911,75401 75587,77995 78038) Alignment (genomic DNA sequence = upper lines): ACCGTCATAA GCTCCGTAGG TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC 74788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| ACCGTCATAA GCTCCGTAGG TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCTACATTC 60 AGCTTTGGAC AGATTTCCTG CAAAATAAAG AGAAACTTAT ATAAAAATTA GCATAAAAAG 74848 | |||||||| ||||||| ATCTTTGGAC AGATTTC... .......... .......... .......... .......... 77 ACTTTTAGAC AGACTAAACT TAAGGAAAAA GTATTAATTA TACCGTGAAA CCACGGTATA 74908 |||||| ||||| |||| .......... .......... .......... .......... ...TGTGAAA CCACGTTATA 94 TCAATATTCA CTTGCAAGAA TCTCAAAGTA ATCAATAATC TCATAAAAAG ACTAATGATT 74968 ||| TCA....... .......... .......... .......... .......... .......... 97 ATCAAGAATC TCACAATACA ATGTTTACCA ATAAGGAATT TTACAATCTA AGAGTCTAAC 75028 .......... .......... .......... .......... .......... .......... 97 CTAACAGAGT CCAACCTATC TGCCGTCTAA CCTCAAAAAT GAGGTATTTC GAACTATTTA 75088 .......... .......... .......... .......... .......... .......... 97 TAAAAAATAA AAAACCTAAT TAAACAAGGA CTTTGTTTGC TGGAAATCTG CCAAAATGCA 75148 .......... .......... .......... .......... .......... .......... 97 GCTAGGTTGA CGGACCTCGC GACGGATCGT CAGGGTCACG ACGGACCATC ATGGACTCCG 75208 .......... .......... .......... .......... .......... .......... 97 TCGTACCATA CTTGTGCAAT TTCTTTTGGT GCTCTTCTTC ATTACCCTCG ATGGCAAGTA 75268 .......... .......... .......... .......... .......... .......... 97 CGACGGACCG TCATAGGCAC AACGGTCCGT CGAGGGTCTT CGTTTCAAAA CACTTCAACT 75328 .......... .......... .......... .......... .......... .......... 97 CTTGGAATCT GGGTACTGGA TTACTTCTCT GATCTTCATG ACGAACCTGC AGGACGGACC 75388 .......... .......... .......... .......... .......... .......... 97 GTCATATCCA CGACAGACCG TAACAAGCTA CGTAACCCCT CACTTGGTCA GACTTCCCCA 75448 || | || | || || ||||||||| |||||||| || ||| ||| .......... ..ACTGTCCA TCACGCACTC CGTAACCCCA TGCTTGGTCA GAATTCTCCA 145 TCTTCCTTCA GCAGCTTCAC TACGCTGCCA CCTACGGACC GTCACAAGCA CGACGGACTG 75508 ||||| |||| |||||| | | |||| | ||| ||||||| | |||| |||| ||||| || | TCTTCTTTCA GCAGCTGCGC TACGATACCA TCTACGGATC TTCACGAGCA CGACGAACCG 205 TCATAAGCTC CGTAGGTGGT -CTCTTCTGC ATTTCTTCGC T-CAAAATCT CCGCATTCAG 75566 ||| || ||| |||||||||| | |||| ||||||| || | |||| || ||| ||||| TCACAATCTC CGTAGGTGGT AGTTTTCTAT ATTTCTT-GC TAAAAAACCT CCGTATTCAT 264 C-TTTGGACA GATTTCCTAC AAAACAAAGA GAAACTTATA TAAAAATTAG CACAAAAAAG 75625 | ||| |||| ||||||| | | CTTTTAGACA AATTTCCTCC CA........ .......... .......... .......... 286 TCTTTTGGAC ACACTAAACT TAAGGAAAAA GTATTAATTA TACCGTGAAA CCACGGTATA 75685 .......... .......... .......... .......... .......... .......... 286 TCAACACCCT CAACTTAAAT TCGTTGTTTG TCCTCAAGCG ACGCACTATG ACACACTACA 75745 .......... .......... .......... .......... .......... .......... 286 CAATCTTTGT ACAATAGTAT CCATGTTTTA TCCTTTTCAA TATTTGCCTA TCAATCTCGA 75805 .......... .......... .......... .......... .......... .......... 286 TTAATCTCAT CAAATCTACG CGTGCTATCA CTATTAGGCT TCAATTGTGT GGGATCAGAA 75865 .......... .......... .......... .......... .......... .......... 286 CATGACATAG GCTCACCATG CATTAACACC TATCCTCTTC AATTTCTCAC CGAGGTGCTA 75925 .......... .......... .......... .......... .......... .......... 286 ACAATTCCGG TATTGCAACT AGTGTCCTCA CTTTAAAACA AAATCCTCAT TTTTCACACA 75985 .......... .......... .......... .......... .......... .......... 286 ATGATTTCAG TTCGAGTATA AAGATTACTT TTCAACACTC GCTCTCAGAA CAAAGTCACA 76045 .......... .......... .......... .......... .......... .......... 286 CTCATTCATA CCTATTGCCA TAAGTTTGCC CTTATTTTCA CTGCCTTAAG TTCGCTATAC 76105 .......... .......... .......... .......... .......... .......... 286 AACCCTTAGG ATCACGATAG GACTTTCTTA GCTAGGAACA TAGGCTCAGG CTCAGGTAGG 76165 .......... .......... .......... .......... .......... .......... 286 GTGTATTTAG GTATACTTTA GTGACTTTTT GCCCTCCTTG ACATATCGAC TAAACCTTCC 76225 .......... .......... .......... .......... .......... .......... 286 ACTTTCTATT ATTTGATCTC GCCCAATTTC TCATATTCTT TCACCTTTTT TTCTCTTCTT 76285 .......... .......... .......... .......... .......... .......... 286 TCATCATTTG TGTAAGTGAC TCTCTTCTTT TCTTGCTTGT ATTTCTTATA TATTTTCTTT 76345 .......... .......... .......... .......... .......... .......... 286 TTCTTTACTT TTGTTTTAAC TAATTCTTGA GTCACTTTAC TTTTGTTCTT TCAACCCCAC 76405 .......... .......... .......... .......... .......... .......... 286 TTTCCAGAGC ATTCCTCATA ATAGCCACCC TCAAACTCAT GGCTTTGCAT GAGACAAGGT 76465 .......... .......... .......... .......... .......... .......... 286 ACACAATACC CAAAGTTGGG TCAGGGCCAT AACAAAGGTT GTTTACTGCA TTAGCCACCC 76525 .......... .......... .......... .......... .......... .......... 286 TCAACTTATG CTTTTGGCAT AAGCTGAGGT GCACATGTCC AAGGAGGGAC CAGGGCCAAC 76585 .......... .......... .......... .......... .......... .......... 286 ACATTGTTCC CAGAAAAGAT CAGTTGGGGT GTAAAAGAAA GGTCTATTTT AAGCTCAGAT 76645 .......... .......... .......... .......... .......... .......... 286 CATTTGGATC AAAGAAGGAT AAATTTCATT TGGTTTTCTT TTATTTAGGC TAGAAATGGG 76705 .......... .......... .......... .......... .......... .......... 286 CTATATTGAA TAAGGGCCTA TGATCCTTTC CTAATTGTCT ATTACAGCTT ACTTTCAGCA 76765 .......... .......... .......... .......... .......... .......... 286 GGGCTAACCA GGCAAGTTCT ATCTCAGTAC CAATAGTGGA CTTTTTCGAA TTTTCCTCAC 76825 .......... .......... .......... .......... .......... .......... 286 ACTCACTTGA CATCTCATCA CTATACCAAA TTATCACACA CCTAGTTCGA ATTTAAGACT 76885 .......... .......... .......... .......... .......... .......... 286 TAGGATAATG CAATGGTGTA ACTCTATGTC ATGCTTAGGG CTACACAATT ATCAGTTACT 76945 .......... .......... .......... .......... .......... .......... 286 ATGCCTAGTC ATGCATCATT TTCAAGTTTA TTAAGATATA ATTTTAGCCA TCATGCTCCA 77005 .......... .......... .......... .......... .......... .......... 286 TAATTAAACT ATGTACGAAA GATATAAACA TGCGGGTTCA ACAGAAAAAG TAATCAGTCT 77065 .......... .......... .......... .......... .......... .......... 286 TTTGCGGAAT AAGAACATAG GCAAGAAAAC CCCAAAAGAG GATAGTGAAT TGGGCTACTC 77125 .......... .......... .......... .......... .......... .......... 286 AGACTTCACC CTAACACTCA CTTTCCATTT ACCCCACCCT CAACAAAAAA ACATGCAATT 77185 .......... .......... .......... .......... .......... .......... 286 GTACTCAATG CATAAAAAAA TTGAAATACA AGAGTGGTAG GTGAAGCAAA CCTGGGGCGC 77245 .......... .......... .......... .......... .......... .......... 286 AAAGCGCCGA CAATTAGCAC GGACCATTGT GATTATGACG GTCCGTCATC GATGTAAGTC 77305 .......... .......... .......... .......... .......... .......... 286 GTGGGACACT TACAAAAATG GAGACCCTTA AGAGAGGGGT CTCTAACCGC CATGACGGTT 77365 .......... .......... .......... .......... .......... .......... 286 ATGATGGAGG AACCGTCGAG AGTATGACGG TCCGTCGTAG ATGTCCGTTG GAGGACCCTT 77425 .......... .......... .......... .......... .......... .......... 286 AGAAAATGTG AGAGACCTTT AGGAGTAGGG TCTCTGACAA CCAGCATGGT TGTGCAGGAC 77485 .......... .......... .......... .......... .......... .......... 286 GGACCGTCGA GAGCACGACG GTCCATCGCA TGTGTCCGTT GATGACTGTT TCAGAGTGAT 77545 .......... .......... .......... .......... .......... .......... 286 CTTCTGCAGA ATTTCCTGGT GATGTGCCTG CAAATTTAAA ACCCATTAGT AGAGAATGCT 77605 .......... .......... .......... .......... .......... .......... 286 ACCATTACTA AAAAGACTAT AAATATTGGG TTGCCTCCCA ACAAGCGCCT GATTTAATGT 77665 .......... .......... .......... .......... .......... .......... 286 CGCGGCATGA CTGGGGACCC TTGATTACTC AGACTTCATC AAGATTGTAT GCCTCTATCA 77725 .......... .......... .......... .......... .......... .......... 286 CTTTATTCCC CGATGCTTTA TGCCCACAAT AAAGTTTTAT TCTATCTATA TTCCTCTTAA 77785 .......... .......... .......... .......... .......... .......... 286 ACCACACTCC CTCCTTGGCT TTTAACTCAA CTACTCCATG AGGGAATACT TGGGTAATCA 77845 .......... .......... .......... .......... .......... .......... 286 AGTAAAGGCC AGTCCATTTG GACTTGAGCT TGCCCAGAAG ACAAGGCACC CCAGAACTAT 77905 .......... .......... .......... .......... .......... .......... 286 CTACAAGCAC CAAATCCCCA ACCATCAACT CTTGTTTTGC ATTTTTCTGT TCAGTCTCCT 77965 .......... .......... .......... .......... .......... .......... 286 TCTTCATCTT TTCTTAGGGG ATATGGCAGA TACCGATTGG AGCTCACCAC TCTGCCTCAT 78025 | | | |||| ||| || ||| | ||| .......... .......... .........T TTCTGGTTGG AGCCTACTCG TCTATCGCAT 317 GGTCCTACAA ATG 78038 | || | || GTTCTCGCTG CTG 330 hqPGS_C08HBa0027D09.1+_SGN-E336039- (74729 74805,74892 74911,75401 75587) ******************************************************************************** EST sequence 47 +strand 534 n (File: SGN-E286708+) 1 TCGCGAGGTC CGTCATGGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTATGC 61 AATTTCTTTT GTTGCTCTTC TTCATTACCC TCAACGGCAA GTATGGCGGA CCGTCATAGG 121 CACAACGGTC CGTCGAGGGC CTTCGTTCCA AAACACTTTA ACTCTTGGAA TATGGGTACT 181 GGGATTACTT CTCTGAACTT CATGACGAAC CTGTAGGACG GACCGTCATA GACACGATGG 241 ACCGTCACAA GCTTCGTAAC CCCATACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT 301 GCACTACGCT GACACCTACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 361 TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 421 CAAAATAAAA AGAAACTAAT ATAGAAATTA GCACAAAAAG GATTTTAGAC ACACTAAACT 481 TAAGGAAAAA GTATTAATAA TACCATGAAA CCACGGTATA TCACTTGGCC ACCA Predicted gene structure (within gDNA segment 72838 to 75631): Exon 1 74392 74903 ( 512 n); cDNA 1 515 ( 515 n); score: 0.908 MATCH C08HBa0027D09.1+ SGN-E286708+ 0.908 512 0.959 C PGS_C08HBa0027D09.1+_SGN-E286708+ (74392 74903) Alignment (genomic DNA sequence = upper lines): TCGCGAAGGA CTATCGTGGT CACAACGGAC CGTCATGGAC TCCGTCATCC CATACTTGTG 74451 ||||| ||| | || |||| ||| |||||| |||||||||| |||||| ||| ||||||| || TCGCG-AGGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 59 CAATTTCTTC TGCTGCTC-T CTTCATTCCC CTTGACGGCA AGTATGACGG ACCGTCATAG 74510 ||||||||| || ||||| | ||||||| || || |||||| |||||| ||| |||||||||| CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 119 GCACAACGGT CCGTCGAGGG TCTTCGTTTC AAAACACTTC AACACTTGGA ATCTGGGTAC 74570 |||||||||| |||||||||| ||||||| | ||||||||| ||| |||||| || ||||||| GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 179 T-GGATCACT TCTCTGAACT TCATGACAAA CCTGCAGGAC GGACCGTCAT AGACATGACG 74629 | |||| ||| |||||||||| ||||||| || |||| ||||| |||||||||| ||||| || | TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 239 GACCGTCACA AGCTTCGTAA -CCCACACTT GGCCAGACTT CCCCA-CTTC CTTCAGCAGC 74687 |||||||||| |||||||||| |||| |||| || ||||||| ||||| |||| |||||||||| GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 299 TGCACTACGC TGCCACCTAC GGACCGTCGC AAGCACGACG GACCGTCATA AGCTCCGTAG 74747 |||||||||| || ||||||| |||||||| | |||||||||| |||||||||| |||||||||| TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 359 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 74807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 419 GCAAAATAAA GAGAAACTTA TATAAAAATT AGCATAAAAA GACTTTTAGA CAGACTAAAC 74867 |||||||||| ||||||| | |||| ||||| |||| ||||| | ||||||| || ||||||| GCAAAATAAA AAGAAACTAA TATAGAAATT AGCACAAAAA GGATTTTAGA CACACTAAAC 479 TTAAGGAAAA AGTATTAATT ATACCGTGAA ACCACG 74903 |||||||||| ||||||||| ||||| |||| |||||| TTAAGGAAAA AGTATTAATA ATACCATGAA ACCACG 515 hqPGS_C08HBa0027D09.1+_SGN-E286708+ (74392 74903) ******************************************************************************** EST sequence 292 -strand 582 n (File: SGN-E322644-) 1 AACAAGGACT CTATTTGCTG GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA 61 CGGATCGTCA TGGTCACGAT GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT 121 CTTTTGCTTC TCTCTTCATT ACCCTCGACG GCAGGTATGA CGGACCGTCA TAGGCACAAC 181 GGTCTATCGA GGGTCTTCGT TTCAACACAC TTGAACTCTT GGAATATGGG TACTGGGACT 241 ACTTCTCTGA ACTTCATGAC GAACCTGCAG GACGGACCGT CATGAACTCC GTAGCCCCGC 301 ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG 361 TCACAAGCAC GACGGACCGT CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC 421 AAAATCTCCG CATTCATCTT TGGACAGATT TCCTTAAAAA GTAAATCGCT TACTACTGAA 481 TGGAGATGCT TGGCGTCGAA AACATTGAGA ACATGACCAC CAGTATATCT TTTTCGTGAG 541 ATAAACCTTG CACCATACGT CCATACCAGA TAGCCAAAGC AT Predicted gene structure (within gDNA segment 70819 to 76687): Exon 1 75111 75589 ( 479 n); cDNA 1 460 ( 460 n); score: 0.870 MATCH C08HBa0027D09.1+ SGN-E322644- 0.870 479 0.823 C PGS_C08HBa0027D09.1+_SGN-E322644- (75111 75589) Alignment (genomic DNA sequence = upper lines): AACAAGGACT TTGTTTGCTG GAAATCTGCC AAAATGCAGC TAGGTTGACG GACCTCGCGA 75170 |||||||||| | ||||||| |||||||||| |||| || || | ||| ||| || ||| ||| AACAAGGACT CTATTTGCTG GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA 60 CGGATCGTCA GGGTCACGAC GGACCATCAT GGACTCCGTC GTACCATACT TGTGCAATTT 75230 |||||||||| |||||||| ||||| |||| |||||| ||| || ||||||| | |||||||| CGGATCGTCA TGGTCACGAT GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT 120 CTTTTGGTGC TCTTCTTCAT TACCCTCGAT GGCAAGTACG ACGGACCGTC ATAGGCACAA 75290 |||||| | | || ||||||| ||||||||| |||| ||| | |||||||||| |||||||||| CTTTTGCTTC TC-TCTTCAT TACCCTCGAC GGCAGGTATG ACGGACCGTC ATAGGCACAA 179 CGGTCCGTCG AGGGTCTTCG TTTCAAAACA CTTCAACTCT TGGAATCTGG GTACT-GGAT 75349 ||||| ||| |||||||||| |||||| ||| ||| |||||| |||||| ||| ||||| ||| CGGTCTATCG AGGGTCTTCG TTTCAACACA CTTGAACTCT TGGAATATGG GTACTGGGAC 239 TACTTCTCTG ATCTTCATGA CGAACCTGCA GGACGGACCG TCATATCCAC GACAGACCGT 75409 |||||||||| | |||||||| |||||||||| |||||||||| || || | | | | | TACTTCTCTG AACTTCATGA CGAACCTGCA GGACGGACCG TC--AT---- G--A-A-C-T 288 AACAAGCTAC GTAACCCCTC ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG CAGCTTCACT 75469 | | ||| |||| | |||||||||| |||||||||| |||| ||||| ||||| |||| ------C--C GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG CAGCTGCACT 340 ACGCTGCCAC CTACGGACCG TCACAAGCAC GACGGACTGT CATAAGCTCC GTAGGTGGTC 75529 |||||||||| |||| ||||| |||||||||| ||||||| || ||||||||| |||||| ||| ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT CATAAGCTCT GTAGGTCGTC 400 TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTACAAAA 75589 | |||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| |||| |||| TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT TGGACAGATT TCCTTAAAAA 460 hqPGS_C08HBa0027D09.1+_SGN-E322644- (75111 75589) ******************************************************************************** EST sequence 199 -strand 680 n (File: SGN-E346859-) 1 TGCCAAAACG CGGCTGGGTC GACGGACCAC GCGACAGAAC GTCGTGGTCA TGACGGACCG 61 TCATGGGCTC CGTCGCCCCA TACTTGGGTG CAATTCTTCT GCTGCTTTCT TCATTCCCCT 121 CGACGGCAAG TGTGACGGAC CGTCACAGGC ACGACGGTCC GTCGAGGGTC TTCGTTACAA 181 AATACTTCAA CTTTTGGAAT TTGGGTACTG GGATCACTTC TCTGATCTTC GCGACGAACC 241 TGCAGGACGG ACCGTCATAT CCATGACGGA CCGTCACAAG CTTCGTAATC CCACACTTGG 301 TCAGACTTCC CCATCTTCCT TCAGCAGCTT CTCTACGCTG CCACCTACGG ACCGTCACAA 361 GCACGACGGA CCGTCATAAG CTCCGTAGGT GGTCTCTTCT GCATTTATCG CTCAAAATCT 421 CCGCATTCAG CTTTAGACAG ATTTCCTGCA AAACAAAGAA AAACTTATAT CAAAATTAGC 481 ACAAAAAGGG CTTTCGGACA CACTAAACTT AAGGAAAAAG TATTAATTAT ACCGTGAAAC 541 CACGGTATAT CAATCCCCTA GTTCTACGTG TCAGTTCGTG ATACCCGATC CCCTAATTCT 601 ACGTGTCGGT TCATGACACC CGCTCCACTA ATCTTATTCT GTCAATCGAT CAAGCCTTCT 661 TTTATACCAA GGCATATCAA Predicted gene structure (within gDNA segment 70762 to 77683): Exon 1 75137 75695 ( 559 n); cDNA 1 559 ( 559 n); score: 0.897 MATCH C08HBa0027D09.1+ SGN-E346859- 0.897 559 0.822 C PGS_C08HBa0027D09.1+_SGN-E346859- (75137 75695) Alignment (genomic DNA sequence = upper lines): TGCCAAAATG CAGCTAGGTT GACGGACCTC GCGACGGATC GTCAGGGTCA CGACGGACCA 75196 |||||||| | | ||| ||| |||||||| | ||||| || | ||| ||||| |||||||| TGCCAAAACG CGGCTGGGTC GACGGACCAC GCGACAGAAC GTCGTGGTCA TGACGGACCG 60 TCATGGACTC CGTCGTACCA TACTT--GTG CAATTTCTTT TGGTGCTCTT CTTCATTACC 75254 |||||| ||| ||||| ||| ||||| ||| ||| ||||| || |||| || ||||||| || TCATGGGCTC CGTCGCCCCA TACTTGGGTG CAA-TTCTTC TGCTGCT-TT CTTCATTCCC 118 CTCGATGGCA AGTACGACGG ACCGTCATAG GCACAACGGT CCGTCGAGGG TCTTCGTTTC 75314 ||||| |||| ||| ||||| ||||||| || |||| ||||| |||||||||| |||||||| | CTCGACGGCA AGTGTGACGG ACCGTCACAG GCACGACGGT CCGTCGAGGG TCTTCGTTAC 178 AAAACACTTC AACTCTTGGA ATCTGGGTAC T-GGATTACT TCTCTGATCT TCATGACGAA 75373 |||| ||||| |||| ||||| || ||||||| | |||| ||| |||||||||| || |||||| AAAATACTTC AACTTTTGGA ATTTGGGTAC TGGGATCACT TCTCTGATCT TCGCGACGAA 238 CCTGCAGGAC GGACCGTCAT ATCCACGACA GACCGTAACA AGCTACGTAA CCCCTCACTT 75433 |||||||||| |||||||||| ||||| ||| |||||| ||| |||| ||||| ||| ||||| CCTGCAGGAC GGACCGTCAT ATCCATGACG GACCGTCACA AGCTTCGTAA TCCCACACTT 298 GGTCAGACTT CCCCATCTTC CTTCAGCAGC TTCACTACGC TGCCACCTAC GGACCGTCAC 75493 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GGTCAGACTT CCCCATCTTC CTTCAGCAGC TTCTCTACGC TGCCACCTAC GGACCGTCAC 358 AAGCACGACG GACTGTCATA AGCTCCGTAG GTGGTCTCTT CTGCATTTCT TCGCTCAAAA 75553 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||| |||||||||| AAGCACGACG GACCGTCATA AGCTCCGTAG GTGGTCTCTT CTGCATTT-A TCGCTCAAAA 417 TCTCCGCATT CAGCTTTGGA CAGATTTCCT ACAAAACAAA GAGAAACTTA TATAAAAATT 75613 |||||||||| ||||||| || |||||||||| ||||||||| || ||||||| ||| |||||| TCTCCGCATT CAGCTTTAGA CAGATTTCCT GCAAAACAAA GAAAAACTTA TATCAAAATT 477 AGCACAAAAA AGTCTTTTGG ACACACTAAA CTTAAGGAAA AAGTATTAAT TATACCGTGA 75673 |||||||||| | |||| || |||||||||| |||||||||| |||||||||| |||||||||| AGCACAAAAA GGGCTTTCGG ACACACTAAA CTTAAGGAAA AAGTATTAAT TATACCGTGA 537 AACCACGGTA TATCAACACC CT 75695 |||||||||| |||||| || || AACCACGGTA TATCAATCCC CT 559 hqPGS_C08HBa0027D09.1+_SGN-E346859- (75137 75695) ******************************************************************************** EST sequence 245 -strand 508 n (File: SGN-E243137-) 1 AAAACGCGGT TGGGTAACAA AAACTCACGA CGGATCGTCA TGGTCACGAT GGACCGTCAT 61 GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC TCTCTTCATT ACCCTCGACG 121 GCAGGTATGA CGGACCGTCA TAGGCACAAC GGTCTATCGA GGGTCTTCGT TTCAACACAC 181 TTGAACTCTT GGAATATGGG TACTGGGACT ACTTCTCTGA ACTTCATGAC GAACCTGCAG 241 GACGGACCGT CATGAACTCC GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG 301 CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT CATAAGCTCT 361 GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT TGGACAGATT 421 TCTACTGAAT GGAGATGCTT GGCGTCGAAA ACATTGAGAA CATGACCACC AGTATATCTT 481 TTTCGTGAGA TAAACCTTGC ACCATACG Predicted gene structure (within gDNA segment 71119 to 76832): Exon 1 75141 75580 ( 440 n); cDNA 1 421 ( 421 n); score: 0.856 MATCH C08HBa0027D09.1+ SGN-E243137- 0.856 440 0.866 C PGS_C08HBa0027D09.1+_SGN-E243137- (75141 75580) Alignment (genomic DNA sequence = upper lines): AAAATGCAGC TAGGTTGACG GACCTCGCGA CGGATCGTCA GGGTCACGAC GGACCATCAT 75200 |||| || | | ||| | ||| ||| |||||||||| |||||||| ||||| |||| AAAACGCGGT TGGGTAACAA AAACTCACGA CGGATCGTCA TGGTCACGAT GGACCGTCAT 60 GGACTCCGTC GTACCATACT TGTGCAATTT CTTTTGGTGC TCTTCTTCAT TACCCTCGAT 75260 |||||| ||| || ||||||| | |||||||| |||||| | | || ||||||| ||||||||| GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC TC-TCTTCAT TACCCTCGAC 119 GGCAAGTACG ACGGACCGTC ATAGGCACAA CGGTCCGTCG AGGGTCTTCG TTTCAAAACA 75320 |||| ||| | |||||||||| |||||||||| ||||| ||| |||||||||| |||||| ||| GGCAGGTATG ACGGACCGTC ATAGGCACAA CGGTCTATCG AGGGTCTTCG TTTCAACACA 179 CTTCAACTCT TGGAATCTGG GTACT-GGAT TACTTCTCTG ATCTTCATGA CGAACCTGCA 75379 ||| |||||| |||||| ||| ||||| ||| |||||||||| | |||||||| |||||||||| CTTGAACTCT TGGAATATGG GTACTGGGAC TACTTCTCTG AACTTCATGA CGAACCTGCA 239 GGACGGACCG TCATATCCAC GACAGACCGT AACAAGCTAC GTAACCCCTC ACTTGGTCAG 75439 |||||||||| || || | | | | | | | ||| |||| | |||||||||| GGACGGACCG TC--AT---- G--A-A-C-T ------C--C GTAGCCCCGC ACTTGGTCAG 280 ACTTCCCCAT CTTCCTTCAG CAGCTTCACT ACGCTGCCAC CTACGGACCG TCACAAGCAC 75499 |||||||||| |||| ||||| ||||| |||| |||||||||| |||| ||||| |||||||||| ACTTCCCCAT CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC 340 GACGGACTGT CATAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC AAAATCTCCG 75559 ||||||| || ||||||||| |||||| ||| | |||||||| |||||| ||| |||||||||| GACGGACCGT CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG 400 CATTCAGCTT TGGACAGATT T 75580 |||||| ||| |||||||||| | CATTCATCTT TGGACAGATT T 421 hqPGS_C08HBa0027D09.1+_SGN-E243137- (75141 75580) ******************************************************************************** EST sequence 36 +strand 800 n (File: SGN-E540293+) 1 GTCGCGAGGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 61 CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 121 GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 181 TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 241 GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 301 TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 361 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 421 GCAAAATAAA AAGAAACTAA TATAGAAATT AGCACAAAAA GGATTTTAGA CACACTAAAC 481 TTAAGGAAAA AGTATTAATA ATACCATGAA ACCACGGTAT ATCACTTGGC CACCACTTCC 541 TTAACCCCTC AAAACTAAGT CCCCACCACG AGCCTTTCCA CGGCCAATAA TAGCTTTCAC 601 GAGCCGTGAA ATAGCTTGTG TGGAGGGGGC TATTTTGGGC AGATTTCACC TAGCCACAGC 661 CTAGCCCACC ACGATCTGTG GTCCTCAGCA TTGTCCATTA CGGTGGTCGT GAGAAGGTGG 721 GAAATGTCTG GGGAAAATTT GGCTGCCCTA GCCCTCTTCC TTGGCTCTAG ACCTCTCACA 781 TAGACTTAGT TTAGGCTACT Predicted gene structure (within gDNA segment 73908 to 79058): Exon 1 75165 75688 ( 524 n); cDNA 2 524 ( 523 n); score: 0.919 MATCH C08HBa0027D09.1+ SGN-E540293+ 0.919 524 0.655 C PGS_C08HBa0027D09.1+_SGN-E540293+ (75165 75688) Alignment (genomic DNA sequence = upper lines): TCGCGACGGA TCGTCAGGGT CACGACGGAC CATCATGGAC TCCGTCGTAC CATACTTGTG 75224 |||||| || ||||| ||| |||||||||| | |||||||| |||||||| | ||||||| || TCGCGA-GGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 60 CAATTTCTTT TGGTGCTCTT CTTCATTACC CTCGATGGCA AGTACGACGG ACCGTCATAG 75284 |||||||||| || ||||||| |||||||||| ||| | |||| |||| | ||| |||||||||| CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 120 GCACAACGGT CCGTCGAGGG TCTTCGTTTC AAAACACTTC AACTCTTGGA ATCTGGGTAC 75344 |||||||||| |||||||||| ||||||| | ||||||||| |||||||||| || ||||||| GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 180 T-GGATTACT TCTCTGATCT TCATGACGAA CCTGCAGGAC GGACCGTCAT ATCCACGACA 75403 | |||||||| ||||||| || |||||||||| |||| ||||| |||||||||| | ||||| TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 240 GACCGTAACA AGCTACGTAA CCCCTCACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 75463 |||||| ||| |||| ||||| |||| |||| |||||||||| |||||||||| |||||||||| GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 300 TTCACTACGC TGCCACCTAC GGACCGTCAC AAGCACGACG GACTGTCATA AGCTCCGTAG 75523 | |||||||| || ||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 360 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 75583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 420 ACAAAACAAA GAGAAACTTA TATAAAAATT AGCACAAAAA AGTCTTTTGG ACACACTAAA 75643 ||||| ||| ||||||| | |||| ||||| ||||| |||| || |||| | |||||||||| GCAAAATAAA AAGAAACTAA TATAGAAATT AGCAC-AAAA AGGATTTTAG ACACACTAAA 479 CTTAAGGAAA AAGTATTAAT TATACCGTGA AACCACGGTA TATCA 75688 |||||||||| |||||||||| ||||| ||| |||||||||| ||||| CTTAAGGAAA AAGTATTAAT AATACCATGA AACCACGGTA TATCA 524 hqPGS_C08HBa0027D09.1+_SGN-E540293+ (75165 75688) ******************************************************************************** EST sequence 46 +strand 534 n (File: SGN-E286708+) 1 TCGCGAGGTC CGTCATGGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTATGC 61 AATTTCTTTT GTTGCTCTTC TTCATTACCC TCAACGGCAA GTATGGCGGA CCGTCATAGG 121 CACAACGGTC CGTCGAGGGC CTTCGTTCCA AAACACTTTA ACTCTTGGAA TATGGGTACT 181 GGGATTACTT CTCTGAACTT CATGACGAAC CTGTAGGACG GACCGTCATA GACACGATGG 241 ACCGTCACAA GCTTCGTAAC CCCATACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT 301 GCACTACGCT GACACCTACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 361 TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 421 CAAAATAAAA AGAAACTAAT ATAGAAATTA GCACAAAAAG GATTTTAGAC ACACTAAACT 481 TAAGGAAAAA GTATTAATAA TACCATGAAA CCACGGTATA TCACTTGGCC ACCA Predicted gene structure (within gDNA segment 73918 to 76408): Exon 1 75165 75680 ( 516 n); cDNA 1 515 ( 515 n); score: 0.918 MATCH C08HBa0027D09.1+ SGN-E286708+ 0.918 516 0.966 C PGS_C08HBa0027D09.1+_SGN-E286708+ (75165 75680) Alignment (genomic DNA sequence = upper lines): TCGCGACGGA TCGTCAGGGT CACGACGGAC CATCATGGAC TCCGTCGTAC CATACTTGTG 75224 |||||| || ||||| ||| |||||||||| | |||||||| |||||||| | ||||||| || TCGCGA-GGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 59 CAATTTCTTT TGGTGCTCTT CTTCATTACC CTCGATGGCA AGTACGACGG ACCGTCATAG 75284 |||||||||| || ||||||| |||||||||| ||| | |||| |||| | ||| |||||||||| CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 119 GCACAACGGT CCGTCGAGGG TCTTCGTTTC AAAACACTTC AACTCTTGGA ATCTGGGTAC 75344 |||||||||| |||||||||| ||||||| | ||||||||| |||||||||| || ||||||| GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 179 T-GGATTACT TCTCTGATCT TCATGACGAA CCTGCAGGAC GGACCGTCAT ATCCACGACA 75403 | |||||||| ||||||| || |||||||||| |||| ||||| |||||||||| | ||||| TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 239 GACCGTAACA AGCTACGTAA CCCCTCACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 75463 |||||| ||| |||| ||||| |||| |||| |||||||||| |||||||||| |||||||||| GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 299 TTCACTACGC TGCCACCTAC GGACCGTCAC AAGCACGACG GACTGTCATA AGCTCCGTAG 75523 | |||||||| || ||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 359 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 75583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 419 ACAAAACAAA GAGAAACTTA TATAAAAATT AGCACAAAAA AGTCTTTTGG ACACACTAAA 75643 ||||| ||| ||||||| | |||| ||||| ||||| |||| || |||| | |||||||||| GCAAAATAAA AAGAAACTAA TATAGAAATT AGCAC-AAAA AGGATTTTAG ACACACTAAA 478 CTTAAGGAAA AAGTATTAAT TATACCGTGA AACCACG 75680 |||||||||| |||||||||| ||||| ||| ||||||| CTTAAGGAAA AAGTATTAAT AATACCATGA AACCACG 515 hqPGS_C08HBa0027D09.1+_SGN-E286708+ (75165 75680) ******************************************************************************** EST sequence 308 -strand 498 n (File: SGN-E258752-) 1 TCATGGTCAC GATGGACCGT CATGGACTCT GTCGTCCCAT ACTTATGCAA TTTCTTTTGC 61 TTCTCTCTTC ATTACCCTCG ACGGCAGGTA TGACGGACCG TCATAGGCAC AACGGTCTAT 121 CGAGGGTCTT CGTTTCAACA CACTTGAACT CTTGGAATAT GGGTACTGGG ACTACTTCTC 181 TGAACTTCAT GACGAACCTG CAGGACGGAC CGTCATGAAC TCCGTAGCCC CGCACTTGGT 241 CAGACTTCCC CATCTTCTTT CAGCAGCTGC ACTACGCTGC CACCTACAGA CCGTCACAAG 301 CACGACGGAC CGTCATAAGC TCTGTAGGTC GTCTATTCTG CATTTCTTCA CTCAAAATCT 361 CCGCATTCAT CTTTGGACAG ATTTCCTTAA AAAGTAAATC GCTTACTACT GAATGGAGAT 421 GCTTGGCGTC GAAAACATTG AGAACATGAC CACCAGTATA TCTTTTTCGT GAGATAAACC 481 TTGCACCATA CGTCCATA Predicted gene structure (within gDNA segment 71489 to 76517): Exon 1 75178 75589 ( 412 n); cDNA 1 393 ( 393 n); score: 0.870 MATCH C08HBa0027D09.1+ SGN-E258752- 0.870 412 0.827 C PGS_C08HBa0027D09.1+_SGN-E258752- (75178 75589) Alignment (genomic DNA sequence = upper lines): TCAGGGTCAC GACGGACCAT CATGGACTCC GTCGTACCAT ACTTGTGCAA TTTCTTTTGG 75237 ||| |||||| || ||||| | ||||||||| ||||| |||| |||| ||||| ||||||||| TCATGGTCAC GATGGACCGT CATGGACTCT GTCGTCCCAT ACTTATGCAA TTTCTTTTGC 60 TGCTCTTCTT CATTACCCTC GATGGCAAGT ACGACGGACC GTCATAGGCA CAACGGTCCG 75297 | ||| |||| |||||||||| || |||| || | |||||||| |||||||||| |||||||| TTCTC-TCTT CATTACCCTC GACGGCAGGT ATGACGGACC GTCATAGGCA CAACGGTCTA 119 TCGAGGGTCT TCGTTTCAAA ACACTTCAAC TCTTGGAATC TGGGTACT-G GATTACTTCT 75356 |||||||||| ||||||||| |||||| ||| ||||||||| |||||||| | || ||||||| TCGAGGGTCT TCGTTTCAAC ACACTTGAAC TCTTGGAATA TGGGTACTGG GACTACTTCT 179 CTGATCTTCA TGACGAACCT GCAGGACGGA CCGTCATATC CACGACAGAC CGTAACAAGC 75416 |||| ||||| |||||||||| |||||||||| ||||| || | | | | | | CTGAACTTCA TGACGAACCT GCAGGACGGA CCGTC--AT- ---G--A-A- C-T------C 222 TACGTAACCC CTCACTTGGT CAGACTTCCC CATCTTCCTT CAGCAGCTTC ACTACGCTGC 75476 |||| ||| | |||||||| |||||||||| ||||||| || |||||||| | |||||||||| --CGTAGCCC CGCACTTGGT CAGACTTCCC CATCTTCTTT CAGCAGCTGC ACTACGCTGC 280 CACCTACGGA CCGTCACAAG CACGACGGAC TGTCATAAGC TCCGTAGGTG GTCTCTTCTG 75536 ||||||| || |||||||||| |||||||||| ||||||||| || |||||| |||| ||||| CACCTACAGA CCGTCACAAG CACGACGGAC CGTCATAAGC TCTGTAGGTC GTCTATTCTG 340 CATTTCTTCG CTCAAAATCT CCGCATTCAG CTTTGGACAG ATTTCCTACA AAA 75589 ||||||||| |||||||||| ||||||||| |||||||||| ||||||| | ||| CATTTCTTCA CTCAAAATCT CCGCATTCAT CTTTGGACAG ATTTCCTTAA AAA 393 hqPGS_C08HBa0027D09.1+_SGN-E258752- (75178 75589) ******************************************************************************** EST sequence 178 -strand 502 n (File: SGN-E551207-) 1 CCGTCATGGA CTCCATCATC CCATACTTGT GCAATTTCTT CTTATGCTCT CTTCATTACC 61 CTCGACGGCA AATATGACGA ACCGTCATAG GCAAAACGGT CCGTCAAAGG GTCTTCTTTT 121 CAAAACTATT AAACTCTTGG AATATGGGTA CTAGGACTAC TTCTCAGAAC ATCATGACGA 181 AGATGCAGGA CAGACCGTCA TAAACACGAT GGAGCGTCAT GGACTCCGTA ACCCCACACT 241 TGGTCAAACA TCCCTATATT CCTTCAGCAG ATGCACTACG CTGCCACCTA CGGACCGTCA 301 CAAGCACAAC GGACCGTCAC AAGCTCCGTA GGTGGTCTCC TCTGCATTTC TTCGCTCAAA 361 ATATCCGCAC TCATCTTTGG ATAGATTTCC TGCAAATAAA GAGAAACTTA CATAAAAAAA 421 TAGCACAAAA AGGCTTTAGG ACACACTAAG CTTATGGAAA AAGTATTACT AATATCGTGA 481 AACCACGGTA TATCAACACC CT Predicted gene structure (within gDNA segment 74404 to 77554): Exon 1 75194 75695 ( 502 n); cDNA 1 502 ( 502 n); score: 0.856 MATCH C08HBa0027D09.1+ SGN-E551207- 0.856 502 1.000 C PGS_C08HBa0027D09.1+_SGN-E551207- (75194 75695) Alignment (genomic DNA sequence = upper lines): CCATCATGGA CTCCGTCGTA CCATACTTGT GCAATTTCTT TTGGTGCTCT TCTTCATTAC 75253 || ||||||| |||| || | |||||||||| |||||||||| | ||||| |||||||||| CCGTCATGGA CTCCATCATC CCATACTTGT GCAATTTCTT CTTATGCTC- TCTTCATTAC 59 CCTCGATGGC AAGTACGACG GACCGTCATA GGCACAACGG TCCGTC-GAG GGTCTTCGTT 75312 |||||| ||| || || |||| ||||||||| |||| ||||| |||||| || ||||||| || CCTCGACGGC AAATATGACG AACCGTCATA GGCAAAACGG TCCGTCAAAG GGTCTTCTTT 119 TCAAAACACT TCAACTCTTG GAATCTGGGT ACT-GGATTA CTTCTCTGAT CTTCATGACG 75371 ||||||| | | |||||||| |||| ||||| ||| ||| || |||||| || | |||||||| TCAAAACTAT TAAACTCTTG GAATATGGGT ACTAGGACTA CTTCTCAGAA CATCATGACG 179 AACCTGCAGG ACGGACCGTC ATATCCACGA CAGACCGTAA CAAGCTACGT AACCCCTCAC 75431 || |||||| || ||||||| ||| ||||| || ||| | || ||| |||||| ||| AAGATGCAGG ACAGACCGTC ATAAACACGA TGGAGCGTCA TGGACTCCGT AACCCCACAC 239 TTGGTCAGAC TTCCCCATCT TCCTTCAGCA GCTTCACTAC GCTGCCACCT ACGGACCGTC 75491 ||||||| || |||| || | |||||||||| | | |||||| |||||||||| |||||||||| TTGGTCAAAC ATCCCTATAT TCCTTCAGCA GATGCACTAC GCTGCCACCT ACGGACCGTC 299 ACAAGCACGA CGGACTGTCA TAAGCTCCGT AGGTGGTCTC TTCTGCATTT CTTCGCTCAA 75551 |||||||| | ||||| |||| ||||||||| |||||||||| ||||||||| |||||||||| ACAAGCACAA CGGACCGTCA CAAGCTCCGT AGGTGGTCTC CTCTGCATTT CTTCGCTCAA 359 AATCTCCGCA TTCAGCTTTG GACAGATTTC CTACAAAACA AAGAGAAACT TATAT-AAAA 75610 ||| |||||| ||| ||||| || ||||||| || | ||| | |||||||||| || || |||| AATATCCGCA CTCATCTTTG GATAGATTTC CTGC-AAATA AAGAGAAACT TACATAAAAA 418 ATTAGCACAA AAAAGTCTTT TGGACACACT AAACTTAAGG AAAAAGTATT AATTATACCG 75670 | |||||| | ||||| |||| ||||||||| || |||| || |||||||||| | | ||| || AATAGCAC-A AAAAGGCTTT AGGACACACT AAGCTTATGG AAAAAGTATT ACTAATATCG 477 TGAAACCACG GTATATCAAC ACCCT 75695 |||||||||| |||||||||| ||||| TGAAACCACG GTATATCAAC ACCCT 502 hqPGS_C08HBa0027D09.1+_SGN-E551207- (75194 75695) ******************************************************************************** EST sequence 219 -strand 464 n (File: SGN-E255290-) 1 TCCCATACTT ATGCAATTTC TTTTGCTTCT CTCTTCATTA CCCTCGACGG CAGGTATGAC 61 GGACCGTCAT AGGCACAACG GTCTATCGAG GGTCTTCGTT TCAACACACT TGAACTCTTG 121 GAATATGGGT ACTGGGACTA CTTCTCTGAA CTTCATGACG AACCTGCAGG ACGGACCGTC 181 ATGAACTCCG TAGCCCCGCA CTTGGTCAGA CTTCCCCATC TTCTTTCAGC AGCTGCACTA 241 CGCTGCCACC TACAGACCGT CACAAGCACG ACGGACCGTC ATAAGCTCTG TAGGTCGTCT 301 ATTCTGCATT TCTTCACTCA AAATCTCCGC ATTCATCTTT GGACAGATTT CCTTAAAAAG 361 TAAATCGCTT ACTACTGAAT GGAGATGCTT GGCGTCGAAA ACATTGAGAA CATGACCACC 421 AGTATATCTT TTTCGTGAGA TAAACCTTGC ACCATACGTC CATA Predicted gene structure (within gDNA segment 71829 to 76517): Exon 1 75214 75589 ( 376 n); cDNA 3 359 ( 357 n); score: 0.871 MATCH C08HBa0027D09.1+ SGN-E255290- 0.871 376 0.810 C PGS_C08HBa0027D09.1+_SGN-E255290- (75214 75589) Alignment (genomic DNA sequence = upper lines): CCATACTTGT GCAATTTCTT TTGGTGCTCT TCTTCATTAC CCTCGATGGC AAGTACGACG 75273 |||||||| | |||||||||| ||| | ||| |||||||||| |||||| ||| | ||| |||| CCATACTTAT GCAATTTCTT TTGCTTCTC- TCTTCATTAC CCTCGACGGC AGGTATGACG 61 GACCGTCATA GGCACAACGG TCCGTCGAGG GTCTTCGTTT CAAAACACTT CAACTCTTGG 75333 |||||||||| |||||||||| || |||||| |||||||||| ||| |||||| ||||||||| GACCGTCATA GGCACAACGG TCTATCGAGG GTCTTCGTTT CAACACACTT GAACTCTTGG 121 AATCTGGGTA CT-GGATTAC TTCTCTGATC TTCATGACGA ACCTGCAGGA CGGACCGTCA 75392 ||| |||||| || ||| ||| |||||||| | |||||||||| |||||||||| ||||||||| AATATGGGTA CTGGGACTAC TTCTCTGAAC TTCATGACGA ACCTGCAGGA CGGACCGTC- 180 TATCCACGAC AGACCGTAAC AAGCTACGTA ACCCCTCACT TGGTCAGACT TCCCCATCTT 75452 || | | | | | | |||| |||| |||| |||||||||| |||||||||| -AT----G-- A-A-C-T--- ---C--CGTA GCCCCGCACT TGGTCAGACT TCCCCATCTT 222 CCTTCAGCAG CTTCACTACG CTGCCACCTA CGGACCGTCA CAAGCACGAC GGACTGTCAT 75512 | |||||||| || ||||||| |||||||||| | |||||||| |||||||||| |||| ||||| CTTTCAGCAG CTGCACTACG CTGCCACCTA CAGACCGTCA CAAGCACGAC GGACCGTCAT 282 AAGCTCCGTA GGTGGTCTCT TCTGCATTTC TTCGCTCAAA ATCTCCGCAT TCAGCTTTGG 75572 |||||| ||| ||| |||| | |||||||||| ||| |||||| |||||||||| ||| |||||| AAGCTCTGTA GGTCGTCTAT TCTGCATTTC TTCACTCAAA ATCTCCGCAT TCATCTTTGG 342 ACAGATTTCC TACAAAA 75589 |||||||||| | |||| ACAGATTTCC TTAAAAA 359 hqPGS_C08HBa0027D09.1+_SGN-E255290- (75214 75589) ******************************************************************************** EST sequence 297 -strand 402 n (File: SGN-E258181-) 1 ACGGACCGTC ATAGGCACAA CGGTCTATAG AGGGTTTTCG TTTCAACACA CTTGAACTCT 61 TGGAATATGG GTACTGGGAC TACTTCTCTG AACTTCATGA CGAACCTGCA GGACGGACCG 121 TCATGAACTC CGTAGCCCCG CACTTGGTCA GACTTCCCCA TCTTCTTTCA GCAGCTGCAC 181 TACGCTGCCA CCTACAGACC GTCACAAGCA CGACGGACCG TCATAAGCTC TGTAGGTCGT 241 CTATTCTGCA TTTCTTCACT CAAAATCTCC GCATTCATCT TTGGACAGAT TTCCTTAAAA 301 AGTAAATCGC TTACTACTGA ATGGAGATGC TTGGCGTCGA AAACATTGAG AACATGACCA 361 CCAGTATATC TTTTTCGTGA GATAAACCTT GCACCATACG TC Predicted gene structure (within gDNA segment 72409 to 76477): Exon 1 75271 75589 ( 319 n); cDNA 1 301 ( 301 n); score: 0.864 MATCH C08HBa0027D09.1+ SGN-E258181- 0.864 319 0.794 C PGS_C08HBa0027D09.1+_SGN-E258181- (75271 75589) Alignment (genomic DNA sequence = upper lines): ACGGACCGTC ATAGGCACAA CGGTCCGTCG AGGGTCTTCG TTTCAAAACA CTTCAACTCT 75330 |||||||||| |||||||||| ||||| | | ||||| |||| |||||| ||| ||| |||||| ACGGACCGTC ATAGGCACAA CGGTCTATAG AGGGTTTTCG TTTCAACACA CTTGAACTCT 60 TGGAATCTGG GTACT-GGAT TACTTCTCTG ATCTTCATGA CGAACCTGCA GGACGGACCG 75389 |||||| ||| ||||| ||| |||||||||| | |||||||| |||||||||| |||||||||| TGGAATATGG GTACTGGGAC TACTTCTCTG AACTTCATGA CGAACCTGCA GGACGGACCG 120 TCATATCCAC GACAGACCGT AACAAGCTAC GTAACCCCTC ACTTGGTCAG ACTTCCCCAT 75449 || || | | | | | | | || | |||| | |||||||||| |||||||||| TC--AT---- G--A-A-C-T --C-CG-TA- G---CCCCGC ACTTGGTCAG ACTTCCCCAT 161 CTTCCTTCAG CAGCTTCACT ACGCTGCCAC CTACGGACCG TCACAAGCAC GACGGACTGT 75509 |||| ||||| ||||| |||| |||||||||| |||| ||||| |||||||||| ||||||| || CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT 221 CATAAGCTCC GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT 75569 ||||||||| |||||| ||| | |||||||| |||||| ||| |||||||||| |||||| ||| CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT 281 TGGACAGATT TCCTACAAAA 75589 |||||||||| |||| |||| TGGACAGATT TCCTTAAAAA 301 hqPGS_C08HBa0027D09.1+_SGN-E258181- (75271 75589) ******************************************************************************** EST sequence 9 +strand 716 n (File: SGN-E578039+) 1 CGAGGGTCTT TGTTCTAATA CACTTCAACT CTTGGAATTT GGGTACTGGG ATCACTTCTC 61 TGAACTTCAC GACGAACCTG CAGGACGGAC CGTCAGATCC ACGACGGACC GTCACAAGCT 121 TCGTAATCCC ACACTTAGTC AGACTTCCCT ATCTTCCTTC AGCAGCTGCA CTACGCTTCC 181 ACCTACGGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG TTTCTTCTGC 241 ATTTCTTCGC TCAAAATCTC CGCATTCAGC TTTGGACAGA TTTCCTGCAA AACAAAGAGT 301 AACTTATATA AAAATTAGCA CAAAAAGGCT TTTGGACACA CTAAGCTTAA GGAAAAAGTA 361 TTAATAATAC CGTGAAACCA CGGTATATCA ACACCCTCAA CTTAAATTAG TTGTTTGTCC 421 TCAAGCGACG CACTATGACT CACTACACAA TCTTTGTACA ATAGTATCCA TGTTTTATCC 481 TTTGCAATCA TTTGGCTATC AATCCCGATT AATCTCATCA AATCTATGCA TGCTATCACT 541 ATTAGGTTTG AATTTTGTGG GATCAGAATA TGACACAGAC TTACCATGCA CTAACACCTA 601 TCCTCTTCAA TTTCTCACCG AGGTGCTAAC AATTCTAGTA TTGCAACTAG TGTCCTCACT 661 ATAAGACAAA ATCCTCCTTT TTCACACAGT GATTTTAGTT TGAGTATAAG GATTAC Predicted gene structure (within gDNA segment 73492 to 77127): Exon 1 75299 76013 ( 715 n); cDNA 1 716 ( 716 n); score: 0.923 MATCH C08HBa0027D09.1+ SGN-E578039+ 0.923 715 0.999 C PGS_C08HBa0027D09.1+_SGN-E578039+ (75299 76013) Alignment (genomic DNA sequence = upper lines): CGAGGGTCTT CGTTTCAAAA CACTTCAACT CTTGGAATCT GGGTACT-GG ATTACTTCTC 75357 |||||||||| ||| || | |||||||||| |||||||| | ||||||| || || ||||||| CGAGGGTCTT TGTTCTAATA CACTTCAACT CTTGGAATTT GGGTACTGGG ATCACTTCTC 60 TGATCTTCAT GACGAACCTG CAGGACGGAC CGTCATATCC ACGACAGACC GTAACAAGCT 75417 ||| ||||| |||||||||| |||||||||| ||||| |||| ||||| |||| || ||||||| TGAACTTCAC GACGAACCTG CAGGACGGAC CGTCAGATCC ACGACGGACC GTCACAAGCT 120 ACGTAACCCC TCACTTGGTC AGACTTCCCC ATCTTCCTTC AGCAGCTTCA CTACGCTGCC 75477 ||||| ||| ||||| ||| ||||||||| |||||||||| ||||||| || ||||||| || TCGTAATCCC ACACTTAGTC AGACTTCCCT ATCTTCCTTC AGCAGCTGCA CTACGCTTCC 180 ACCTACGGAC CGTCACAAGC ACGACGGACT GTCATAAGCT CCGTAGGTGG TCTCTTCTGC 75537 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| | |||||||| ACCTACGGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG TTTCTTCTGC 240 ATTTCTTCGC TCAAAATCTC CGCATTCAGC TTTGGACAGA TTTCCTACAA AACAAAGAGA 75597 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| ATTTCTTCGC TCAAAATCTC CGCATTCAGC TTTGGACAGA TTTCCTGCAA AACAAAGAGT 300 AACTTATATA AAAATTAGCA CAAAAAAGTC TTTTGGACAC ACTAAACTTA AGGAAAAAGT 75657 |||||||||| |||||||||| | |||||| | |||||||||| ||||| |||| |||||||||| AACTTATATA AAAATTAGCA C-AAAAAGGC TTTTGGACAC ACTAAGCTTA AGGAAAAAGT 359 ATTAATTATA CCGTGAAACC ACGGTATATC AACACCCTCA ACTTAAATTC GTTGTTTGTC 75717 |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATTAATAATA CCGTGAAACC ACGGTATATC AACACCCTCA ACTTAAATTA GTTGTTTGTC 419 CTCAAGCGAC GCACTATGAC ACACTACACA ATCTTTGTAC AATAGTATCC ATGTTTTATC 75777 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CTCAAGCGAC GCACTATGAC TCACTACACA ATCTTTGTAC AATAGTATCC ATGTTTTATC 479 CTTTTCAAT- ATTTGCCTAT CAATCTCGAT TAATCTCATC AAATCTACGC GTGCTATCAC 75836 |||| |||| ||||| |||| ||||| |||| |||||||||| ||||||| || ||||||||| CTTTGCAATC ATTTGGCTAT CAATCCCGAT TAATCTCATC AAATCTATGC ATGCTATCAC 539 TATTAGGCTT CAATTGTGTG GGATCAGAAC ATGACATAGG CTCACCATGC ATTAACACCT 75896 ||||||| || |||| |||| ||||||||| |||||| || || ||||||| | |||||||| TATTAGGTTT GAATTTTGTG GGATCAGAAT ATGACACAGA CTTACCATGC ACTAACACCT 599 ATCCTCTTCA ATTTCTCACC GAGGTGCTAA CAATTCCGGT ATTGCAACTA GTGTCCTCAC 75956 |||||||||| |||||||||| |||||||||| |||||| || |||||||||| |||||||||| ATCCTCTTCA ATTTCTCACC GAGGTGCTAA CAATTCTAGT ATTGCAACTA GTGTCCTCAC 659 TTTAAAACAA AATCCTCATT TTTCACACAA TGATTTCAGT TCGAGTATAA AGATTAC 76013 | ||| |||| ||||||| || ||||||||| |||||| ||| | |||||||| |||||| TATAAGACAA AATCCTCCTT TTTCACACAG TGATTTTAGT TTGAGTATAA GGATTAC 716 hqPGS_C08HBa0027D09.1+_SGN-E578039+ (75299 76013) ******************************************************************************** EST sequence 7 +strand 411 n (File: SGN-E577891+) 1 TTCGTTTCAA AATACTTCAG CTCTTGGAAT CTGGGTACTG GAATCACTTC TCTGATCTTC 61 ACGACGAACC TGCAGGACGG ACCGTCATAG CCATGACGGA CCGTCACAAT CTTCGTAATC 121 CCACACTTGG TGAGACTTCC CCATCTTCCT TCAGCAGCTT CTCTACGCTG CCACCTACGG 181 AGCGTCAAAG GCACGATGGA CCGTCATAAG CTCAGTAGGT GGTCTCTTCT ACATTTTTTC 241 GCTCAAAATC TCTGCTTTCA GCTTTGGACA GATTTCCTGC AAAATAAAGA GAAACTTATA 301 CCAAAATTAG CACAAAAAGG CTTACGGACA CACTAAACTT AAGGCAAAAG TATTAATTAT 361 ACCGTGAAAC CACGGTATAT CAGGGACATG AACTCGAAGG CCATTGTTGG C Predicted gene structure (within gDNA segment 74527 to 83339): Exon 1 75307 75715 ( 409 n); cDNA 1 409 ( 409 n); score: 0.879 MATCH C08HBa0027D09.1+ SGN-E577891+ 0.879 409 0.995 C PGS_C08HBa0027D09.1+_SGN-E577891+ (75307 75715) Alignment (genomic DNA sequence = upper lines): TTCGTTTCAA AACACTTCAA CTCTTGGAAT CTGGGTACTG G-ATTACTTC TCTGATCTTC 75365 |||||||||| || |||||| |||||||||| |||||||||| | || ||||| |||||||||| TTCGTTTCAA AATACTTCAG CTCTTGGAAT CTGGGTACTG GAATCACTTC TCTGATCTTC 60 ATGACGAACC TGCAGGACGG ACCGTCATAT CCACGACAGA CCGTAACAAG CTACGTAACC 75425 | |||||||| |||||||||| ||||||||| ||| ||| || |||| |||| || ||||| | ACGACGAACC TGCAGGACGG ACCGTCATAG CCATGACGGA CCGTCACAAT CTTCGTAATC 120 CCTCACTTGG TCAGACTTCC CCATCTTCCT TCAGCAGCTT CACTACGCTG CCACCTACGG 75485 || ||||||| | |||||||| |||||||||| |||||||||| | |||||||| |||||||||| CCACACTTGG TGAGACTTCC CCATCTTCCT TCAGCAGCTT CTCTACGCTG CCACCTACGG 180 ACCGTCACAA GCACGACGGA CTGTCATAAG CTCCGTAGGT GGTCTCTTCT GCATTTCTTC 75545 | ||||| | |||||| ||| | |||||||| ||| |||||| |||||||||| ||||| ||| AGCGTCAAAG GCACGATGGA CCGTCATAAG CTCAGTAGGT GGTCTCTTCT ACATTTTTTC 240 GCTCAAAATC TCCGCATTCA GCTTTGGACA GATTTCCTAC AAAACAAAGA GAAACTTATA 75605 |||||||||| || || |||| |||||||||| |||||||| | |||| ||||| |||||||||| GCTCAAAATC TCTGCTTTCA GCTTTGGACA GATTTCCTGC AAAATAAAGA GAAACTTATA 300 TAAAAATTAG CACAAAAAAG TCTTTTGGAC ACACTAAACT TAAGGAAAAA GTATTAATTA 75665 |||||||| ||| |||||| ||| |||| |||||||||| ||||| |||| |||||||||| CCAAAATTAG CAC-AAAAAG GCTTACGGAC ACACTAAACT TAAGGCAAAA GTATTAATTA 359 TACCGTGAAA CCACGGTATA TCAACACCCT CAACTTAAAT TCGTTGTTTG 75715 |||||||||| |||||||||| ||| | | |||| || | | ||| TACCGTGAAA CCACGGTATA TCAGGGACAT GAACTCGAAG GCCATTGTTG 409 hqPGS_C08HBa0027D09.1+_SGN-E577891+ (75307 75715) ******************************************************************************** EST sequence 208 -strand 400 n (File: SGN-E261126-) 1 ATATGGGTAC TAGGACTACT TCTCAGAACA TCATGACGAA GATGCAGGAC AGACCGTCAT 61 AAACACGATG GAGCGTCATG GACTCCGTAA CCCCACACTT GGTCAAACAT CCCTATATTC 121 CTTCAGCAGA TGCACTACGC TGCCACATAC GGACCGTCAC AAGCACAACG GACCGTCACA 181 AGCTCCGTAG GTGGTCTCCT CTGCATTTCT TCGCTCAAAA TATCCGCACT CATCTTTGGA 241 TAGATTTCCT GCAAATAAAG AGAAACTTAC ATAAAAAAAT AGCACAAAAA GGCTTTAGGA 301 CACACTAAGC TTATGGAAAA AGTATTACTA ATATCGTGAA ACCACGGTAT ATCAACACCC 361 TTAACTTAAA TTTGTTGTTG TCCTCAAGCG ACGCACTTTG Predicted gene structure (within gDNA segment 73401 to 76362): Exon 1 75335 75735 ( 401 n); cDNA 1 400 ( 400 n); score: 0.858 MATCH C08HBa0027D09.1+ SGN-E261126- 0.858 401 1.003 C PGS_C08HBa0027D09.1+_SGN-E261126- (75335 75735) Alignment (genomic DNA sequence = upper lines): ATCTGGGTAC T-GGATTACT TCTCTGATCT TCATGACGAA CCTGCAGGAC GGACCGTCAT 75393 || ||||||| | ||| |||| |||| || | |||||||||| |||||||| ||||||||| ATATGGGTAC TAGGACTACT TCTCAGAACA TCATGACGAA GATGCAGGAC AGACCGTCAT 60 ATCCACGACA GACCGTAACA AGCTACGTAA CCCCTCACTT GGTCAGACTT CCCCATCTTC 75453 | ||||| || ||| | || ||||| |||| ||||| ||||| || | ||| || ||| AAACACGATG GAGCGTCATG GACTCCGTAA CCCCACACTT GGTCAAACAT CCCTATATTC 120 CTTCAGCAGC TTCACTACGC TGCCACCTAC GGACCGTCAC AAGCACGACG GACTGTCATA 75513 ||||||||| | |||||||| |||||| ||| |||||||||| |||||| ||| ||| |||| | CTTCAGCAGA TGCACTACGC TGCCACATAC GGACCGTCAC AAGCACAACG GACCGTCACA 180 AGCTCCGTAG GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA 75573 |||||||||| |||||||| | |||||||||| |||||||||| | |||||| | || ||||||| AGCTCCGTAG GTGGTCTCCT CTGCATTTCT TCGCTCAAAA TATCCGCACT CATCTTTGGA 240 CAGATTTCCT ACAAAACAAA GAGAAACTTA TAT-AAAAAT TAGCACAAAA AAGTCTTTTG 75632 ||||||||| | ||| ||| |||||||||| || ||||| |||||| ||| ||| |||| | TAGATTTCCT GC-AAATAAA GAGAAACTTA CATAAAAAAA TAGCAC-AAA AAGGCTTTAG 298 GACACACTAA ACTTAAGGAA AAAGTATTAA TTATACCGTG AAACCACGGT ATATCAACAC 75692 |||||||||| |||| |||| ||||||||| | ||| |||| |||||||||| |||||||||| GACACACTAA GCTTATGGAA AAAGTATTAC TAATATCGTG AAACCACGGT ATATCAACAC 358 CCTCAACTTA AATTCGTTGT TTGTCCTCAA GCGACGCACT ATG 75735 ||| |||||| |||| |||| |||||||||| |||||||||| || CCTTAACTTA AATTTGTTG- TTGTCCTCAA GCGACGCACT TTG 400 hqPGS_C08HBa0027D09.1+_SGN-E261126- (75335 75735) ******************************************************************************** EST sequence 315 -strand 816 n (File: SGN-E546067-) 1 TAGCCATGAC GGACCGTCAC AAGCTTCGTA ATCCCACACT TGGTCAGACT CCCCCATCTT 61 CTTTCAGCAA CTTCTCTACA CTGCCACCTA CGGACCGTCA CAAGCACGAC GGACCGTCAT 121 CAGCTCCATA GGTGGTCTCT TCTGCATTTC TTCTCTCAAA ATCTCCGCAT TTGGCTTTGG 181 ACAAATTTCA TGATCACTTC AGCTCGCGGC TCAATCCACA CGTCTGGATC TTCGGTATTT 241 TTCTTCTTTC TTATGTGTGT TGCCTTGAAT GCCTCAGCTT GAGTTACTGG TCTTCCTAGT 301 TCCTTTTCCA ATTTCCTCCT CACACTTCCT TGACTTTGAG CCCCACTTGG TGTAGAGAAC 361 CACCCTTAAT AGATGATCTA GCCTTCACAC CGATCTCGCT CATCTGCTTA AATCTTGAAT 421 CATTTTCCCA ATGCACAAGT AATTTTTTCC AATCATCCTA TAGAATCCAC TTAGGTTTTT 481 GATCATTTTT ACGAGCTTTA TTCAACAAAC TAGCAAGAAC ACGCGTAACT TTCTTGTGAA 541 AGTTTGCACA AATTTTGGCC TCATGTTCCA GATGCCAAGC ACATTGTTTC TAAACTCCAA 601 AAATATTTGT CTCTTGAGAT TGCTTGGCAT CTTGCCCCAA GTAGGAAAAG CATCTCTATA 661 GAGATCTTTG ATTGACTGAG AAATGATCTC CACAACATCA TCTGGATTGA AACTGTTCAA 721 AATTGATAAT TGGAGTTCTC AGGAATCAAC GACGGAAACT AGGTCTTCAC AGTAAGTGAT 781 GGAATGGTCG GCGACAAGCT CAATGGAGAG GCAACG Predicted gene structure (within gDNA segment 73287 to 81837): Exon 1 75393 75581 ( 189 n); cDNA 1 189 ( 189 n); score: 0.899 Intron 1 75582 75863 ( 282 n); Pd: 0.000 (s: 0.92), Pa: 0.612 (s: 0) Exon 2 75864 75879 ( 16 n); cDNA 190 205 ( 16 n); score: 0.625 MATCH C08HBa0027D09.1+ SGN-E546067- 0.899 205 0.251 C PGS_C08HBa0027D09.1+_SGN-E546067- (75393 75581,75864 75879) Alignment (genomic DNA sequence = upper lines): TATCCACGAC AGACCGTAAC AAGCTACGTA ACCCCTCACT TGGTCAGACT TCCCCATCTT 75452 || ||| ||| |||||| || ||||| |||| | ||| |||| |||||||||| ||||||||| TAGCCATGAC GGACCGTCAC AAGCTTCGTA ATCCCACACT TGGTCAGACT CCCCCATCTT 60 CCTTCAGCAG CTTCACTACG CTGCCACCTA CGGACCGTCA CAAGCACGAC GGACTGTCAT 75512 | ||||||| |||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| CTTTCAGCAA CTTCTCTACA CTGCCACCTA CGGACCGTCA CAAGCACGAC GGACCGTCAT 120 AAGCTCCGTA GGTGGTCTCT TCTGCATTTC TTCGCTCAAA ATCTCCGCAT TCAGCTTTGG 75572 |||||| || |||||||||| |||||||||| ||| |||||| |||||||||| | ||||||| CAGCTCCATA GGTGGTCTCT TCTGCATTTC TTCTCTCAAA ATCTCCGCAT TTGGCTTTGG 180 ACAGATTTCC TACAAAACAA AGAGAAACTT ATATAAAAAT TAGCACAAAA AAGTCTTTTG 75632 ||| ||||| ACAAATTTC. .......... .......... .......... .......... .......... 189 GACACACTAA ACTTAAGGAA AAAGTATTAA TTATACCGTG AAACCACGGT ATATCAACAC 75692 .......... .......... .......... .......... .......... .......... 189 CCTCAACTTA AATTCGTTGT TTGTCCTCAA GCGACGCACT ATGACACACT ACACAATCTT 75752 .......... .......... .......... .......... .......... .......... 189 TGTACAATAG TATCCATGTT TTATCCTTTT CAATATTTGC CTATCAATCT CGATTAATCT 75812 .......... .......... .......... .......... .......... .......... 189 CATCAAATCT ACGCGTGCTA TCACTATTAG GCTTCAATTG TGTGGGATCA GAACATGACA 75872 | || || .......... .......... .......... .......... .......... .ATGATCACT 198 TAGGCTC 75879 | |||| TCAGCTC 205 hqPGS_C08HBa0027D09.1+_SGN-E546067- (75393 75581) ******************************************************************************** EST sequence 121 +strand 222 n (File: SGN-E356584+) 1 CCCCACACTT GTTCAGAATT CCCCATCTTC CTTCATCAGC AGAACTACGA TGTCACCTAT 61 GGACCGGCAC GAGGATGACG GACCGTGAAA AGCTCAGTAG GTTGTACTTT TCTGTATTTC 121 ATGCTCAAAA ACTTTTGAAT TCATCTTTTA CACAGATTTC CTGCAAATAA AGAGAAACTT 181 ATATCAAAAT TAGCACAAAA AGGCTTTTGG ACACACTAAA CT Predicted gene structure (within gDNA segment 73311 to 76255): Exon 1 75424 75645 ( 222 n); cDNA 1 222 ( 222 n); score: 0.804 MATCH C08HBa0027D09.1+ SGN-E356584+ 0.804 222 1.000 C PGS_C08HBa0027D09.1+_SGN-E356584+ (75424 75645) Alignment (genomic DNA sequence = upper lines): CCCCTCACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC TTCACTACGC TGCCACCTAC 75483 |||| ||||| | ||||| || |||||||||| ||||| |||| |||||| || |||||| CCCCACACTT GTTCAGAATT CCCCATCTTC CTTCATCAGC AGAACTACGA TGTCACCTAT 60 GGACCGTCAC AAGCACGACG GACTGTCATA AGCTCCGTAG GTGGT-CTCT TCTGCATTTC 75542 |||||| ||| || | |||| ||| || | | ||||| |||| || || || | |||| ||||| GGACCGGCAC GAGGATGACG GACCGTGAAA AGCTCAGTAG GTTGTACTTT TCTGTATTTC 120 TTCGCTCAAA ATC-TCCGCA TTCAGC-TTT GGACAGATTT CCTACAAAAC AAAGAGAAAC 75600 | ||||||| | | | | | |||| | ||| |||||||| ||| | ||| |||||||||| AT-GCTCAAA AACTTTTGAA TTCATCTTTT ACACAGATTT CCTGC-AAAT AAAGAGAAAC 178 TTATATAAAA ATTAGCACAA AAAAGTCTTT TGGACACACT AAACT 75645 |||||| ||| |||||||| | ||||| |||| |||||||||| ||||| TTATATCAAA ATTAGCAC-A AAAAGGCTTT TGGACACACT AAACT 222 hqPGS_C08HBa0027D09.1+_SGN-E356584+ (75424 75645) ******************************************************************************** EST sequence 68 +strand 560 n (File: SGN-E244201+) 1 TAAGCTTGCA CTTATTTTCA CTGCATTAAG TTTGCTATAC AACTCTTAGG ATCGCGATAG 61 GACTTTCTTA GCTTGTAACA TAGGCTCAGG GTCAGGTAGG GTATATTTAG GTATACTTTA 121 GTGACTTTTT GCCCTCCTTG AAATATCGGC TAAACATACC ATTTTCTATC ATTTTATTTG 181 CCCAGTTTCT CATATTTTTT CACCTTGTTA TTTTCCCTTC TTTCTTCATT TTTGTAAGTG 241 ACTCTTCTTT TCTTGCTTGT ATTTCTTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATATA 301 TATATATATA TATATATATA TATATTAACT TTTCTTTCAA CTAATTCTTG AGTCAATTTA 361 CTTTTATTCT TTCTCTCTCT TTGTTCTTTC AACCCCACTT TCAAGAGCAT TCCTCATAAT 421 AACCACTCTC AACTCATGGC TTTGCCATGA GTCAAAGTAT TCAATACCCA AAGTTGGGTC 481 AGAGCCATAA AAAGGGTTGT TTACTACATT AGCCACTCTC AACTTATGCT TTTGGCATAA 541 TCTGAGGTGC ACATGTCCAA Predicted gene structure (within gDNA segment 74539 to 77177): Exon 1 76066 76332 ( 267 n); cDNA 1 267 ( 267 n); score: 0.875 MATCH C08HBa0027D09.1+ SGN-E244201+ 0.875 267 0.477 C PGS_C08HBa0027D09.1+_SGN-E244201+ (76066 76332) Alignment (genomic DNA sequence = upper lines): TAAGTTTGCC CTTATTTTCA CTGCCTTAAG TTCGCTATAC AACCCTTAGG ATCACGATAG 76125 |||| |||| |||||||||| |||| ||||| || ||||||| ||| |||||| ||| |||||| TAAGCTTGCA CTTATTTTCA CTGCATTAAG TTTGCTATAC AACTCTTAGG ATCGCGATAG 60 GACTTTCTTA GCTAGGAACA TAGGCTCAGG CTCAGGTAGG GTGTATTTAG GTATACTTTA 76185 |||||||||| ||| | |||| |||||||||| ||||||||| || ||||||| |||||||||| GACTTTCTTA GCTTGTAACA TAGGCTCAGG GTCAGGTAGG GTATATTTAG GTATACTTTA 120 GTGACTTTTT GCCCTCCTTG ACATATCGAC TAAACCTTCC ACTTTCTATT ATTTGATCTC 76245 |||||||||| |||||||||| | |||||| | ||||| | || | ||||||| |||| || | GTGACTTTTT GCCCTCCTTG AAATATCGGC TAAACATACC ATTTTCTATC ATTTTAT-TT 179 GCCCAATTTC TCATATTCTT TCACC-T-TT -TTTTCTCTT CTTTCATCAT TTGTGTAAGT 76302 ||||| |||| ||||||| || ||||| | || ||||| ||| ||||| |||| || ||||||| GCCCAGTTTC TCATATTTTT TCACCTTGTT ATTTTCCCTT CTTTCTTCAT TTTTGTAAGT 239 GACTCTCTTC TTTTCTTGCT TGTATTTCTT 76332 || |||||| |||||||||| |||||||||| GA--CTCTTC TTTTCTTGCT TGTATTTCTT 267 hqPGS_C08HBa0027D09.1+_SGN-E244201+ (76066 76332) ******************************************************************************** EST sequence 237 +strand 547 n (File: SGN-E243970+) 1 CCCCCTCGAG AGAGTGCCAA GAGGCGTAGG GGCCGATCAG AGGATGAGGC ACAAGCAAAG 61 AAGAAGGAGC GCCGAGAGAT GGAGGCTGCG AGGAGAGCCT CGCTGAGACG GAGGCACACC 121 AAATCAGAGC ATCGCAGATA GCGGATGGGG CGTCTAGCTC CCGCACTGTA GAGATAGCAA 181 GAGGCACTAC TGATGGTGCG GTTGTTGCTG AGGACATCAC TGAGGGTGTC CAGATTGCTG 241 AGGACACCAC TGAGGGTGTC CAGATTGCAG AGGATGTGGG TTCCAGGAAA CCGGACCCAC 301 CATCTTGTTA AATCGACGGT GCTTTGCGCC ACAGGTTTGC TTCACCTACC ACTCTAATAT 361 TTAGATTTTT TATGCATTGG GGACAGTTGC ATGCTTTTTT GTTGGGGGTG GGGTAAATGG 421 AAAGTGAGTG TTAGGGTGAA GTCTGAGTAG CCCAACTCAC TATCCTCTTT TGGGGTTTTC 481 TTGCCTGTGT TCTTTTTCCC CAAAAGACTG ATTACTTTTT TTGTTGAACC GACACGTTAT 541 ATATTTT Predicted gene structure (within gDNA segment 81814 to 76170): Exon 1 80370 80359 ( 12 n); cDNA 299 310 ( 12 n); score: 0.667 Intron 1 80358 77261 (3098 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 77260 77023 ( 238 n); cDNA 311 546 ( 236 n); score: 0.899 MATCH C08HBa0027D09.1- SGN-E243970+ 0.899 250 0.457 C PGS_C08HBa0027D09.1-_SGN-E243970+ (80370 80359,77260 77023) Alignment (genomic DNA sequence = upper lines): ACTATCTTCC TTGTATGCCA AATACACGGA GTGGAAGAGA ACCCTTGTTT CCCTACGATC 80311 || ||||| | ACCATCTTGT TA........ .......... .......... .......... .......... 310 ACGAGTTAGA GCTACACTGC GCAATATGAA TCCAAACTTA GGAATAAATG ATGAGGATCC 80251 .......... .......... .......... .......... .......... .......... 310 GAACGAGAAC ATCCCAGCTC CGGTTGATGT TCATGGTCAG ATGTTACCCG ATGCTCCGGG 80191 .......... .......... .......... .......... .......... .......... 310 TGAACATCAA CAAAGGGGAC AAAATCCCGT TCCATGGCCC CAAGCACACT ACAGAGGGTA 80131 .......... .......... .......... .......... .......... .......... 310 TGATAACATA GCAGACTCGG ATGGGACACT TGTCTTGCCC TCTCTACCCA CAGCCCACAC 80071 .......... .......... .......... .......... .......... .......... 310 CTTTGTGATA ACTAGTAGCC TGATGCAAAT GCTCACTGCC AGATGTTTGT TTTCAGGGCT 80011 .......... .......... .......... .......... .......... .......... 310 ACCTTCTGAG GATCCACATG CCCATATAGC TAAGGTAAGG GCACTGTGTA AAAGTTGTGT 79951 .......... .......... .......... .......... .......... .......... 310 GGGGAGGCCT GATTTGGATC TAGATGTAAT AGGGCTAAGA GTGTTTCCTC TCTCACTGAC 79891 .......... .......... .......... .......... .......... .......... 310 GGGAGAGGCT GCTATATGGT TCACTGAGCT CCCATACAAC TCAATCTTCA CTTGGAACCA 79831 .......... .......... .......... .......... .......... .......... 310 ATTAAGAGAT GTTTTCTTAG CACGCTACTA TCCGGTCACC AAGAAACTAA ACCACAAAGA 79771 .......... .......... .......... .......... .......... .......... 310 CAGAGTGAAC AACTTTGTGG CACTACCAGG AGAGTCAGTT ACTAGTTCTT GGGATAGATT 79711 .......... .......... .......... .......... .......... .......... 310 CACCTCATAC TTGAGAAGTG TTCCAAATCA CTGTATAGAT GATAAGTCAG TGAAGGAATA 79651 .......... .......... .......... .......... .......... .......... 310 CTTATATCGG GGACAAGATG ATAACAATAG AGCGGTGTTA AACACTATAG TAGGTGGATC 79591 .......... .......... .......... .......... .......... .......... 310 TTATGGGGAG TGTCCTTATG CTGAGATCGC TGAAAAATTA GAGAAAATCT CCCGAAATAA 79531 .......... .......... .......... .......... .......... .......... 310 CAAAGCTTGG AGTACTAGGA AGTCTGATAC AGGGAGAAAC ACCTTCGCAA TATAGTCCAC 79471 .......... .......... .......... .......... .......... .......... 310 TCACAACCCA GCCACAAATG AGATTCGTGA AGAAATGGCT CAGATGAGAT CTGAGCTTGG 79411 .......... .......... .......... .......... .......... .......... 310 GTTGGTACTA AAATATGTCA CAGGGGGTGC AGAAAAGATA AATGCAGTTA ACTACTTGGC 79351 .......... .......... .......... .......... .......... .......... 310 TAAACCACCA CCTCCTAATG ATGAGTGCTA TTATCCAGAG GACACTTATG CAGTAAATGA 79291 .......... .......... .......... .......... .......... .......... 310 GCAGATGGGG GGTTTCCGAC CAAGCGCCCA AGGCTCAAAT CAGGATAATT CGTGCCAAGG 79231 .......... .......... .......... .......... .......... .......... 310 TCAAGGGAAC CAAGGTCGAA CTATGGTAAC TACAACCGTG AGGGTCATTA TGTCCGAGGT 79171 .......... .......... .......... .......... .......... .......... 310 GGAAACTACA ACCGCGACAA CAACTTTAAC AGGGGTAACT ATGCTAATAG AAACGACATG 79111 .......... .......... .......... .......... .......... .......... 310 AATGGGCCCT ATGTCCCTCC TCAAAATCGT GAAGTTAATC CTAGGGATGG TGGAGATAGT 79051 .......... .......... .......... .......... .......... .......... 310 ATGGCGCGAG TTGACGATAT GTTGCATAAA ATGATGAGGA GGTTTGATGC TAATGATGAG 78991 .......... .......... .......... .......... .......... .......... 310 CACATTAAAG AGTTGAGGTG TGATTTAGCT AGTATTGGGC AAAAGGTTGA TACACATGCA 78931 .......... .......... .......... .......... .......... .......... 310 ATTTCGATTA AGCAAATTGA GTTGCTAATG GCCCAATTAT CTGCGACAGT GAACACACGG 78871 .......... .......... .......... .......... .......... .......... 310 CAACCGGGCA CTCTTCCTAG CAACACTGTC CAAAACCCAA AGAATGATGC GCACTGTATG 78811 .......... .......... .......... .......... .......... .......... 310 GCAATCACTA CTCGGGGTGG TAAGCAAACC ATTGACCAAC CTATGCCATC TACTGAGGAA 78751 .......... .......... .......... .......... .......... .......... 310 AATGTGAGAA AGGATAATGA TAATGTGGTA AAGGGTAGTG GTGAAGCAGA GGAAAGTAAT 78691 .......... .......... .......... .......... .......... .......... 310 GGAAAAGATG CAGAAGTACC TATCAATGTA ATTCCCATGC CTAGGCTGCC ACCACCCTTC 78631 .......... .......... .......... .......... .......... .......... 310 CCTCAGAGAT TAGTGAAAAA TACCGAGGAT GGTAAATACC GGCGATTCAT AACAATGTTG 78571 .......... .......... .......... .......... .......... .......... 310 AAGCAACTTT CTATCACTGT CCCTTTGGTA GAAGCTTTAG AAAAAATGCC CGGTTACGCC 78511 .......... .......... .......... .......... .......... .......... 310 AAATTTATGA AAGATCTGGT CACCAAGAAA AGATCAGTCA CTTTCGAGGA TGATGATAGA 78451 .......... .......... .......... .......... .......... .......... 310 CTGTAGCATT GTAGTGCTAT TGCTAAAAGA TCCCTCGTAC AAAAGAAAGA AGATCCTGGT 78391 .......... .......... .......... .......... .......... .......... 310 GCGTTCACTA TTACTTGTAC AGTTGGGTCA TTACATGTTG CGAAAGCATT ATATGATCTG 78331 .......... .......... .......... .......... .......... .......... 310 GGGGCAAGCA TAAATCTCAT GCCCCTCTCA ATTTTAGGGG ATCCAAAACC CACTGCGATG 78271 .......... .......... .......... .......... .......... .......... 310 CGGCTACTAA TGGCTGATGG ACAGTGAAAC GGCCTATAGG GATACTCCAT GATATGCTAG 78211 .......... .......... .......... .......... .......... .......... 310 TAAATGTGGA GTCATTCATC CGTTCGGCTG ATTTTGTTAT TCTTGATTGT GAGGTCGATT 78151 .......... .......... .......... .......... .......... .......... 310 TTGAAGTGCC TATTATTCTT GGGAGGCCAT TTCTTGCTAC AGGTAGAGCA TTAGTTGATA 78091 .......... .......... .......... .......... .......... .......... 310 TGGAGAAGGG ACAGATGACA TTTCAGTTGA ATAATGAAGA AGCGACCTTC AACATTTGTA 78031 .......... .......... .......... .......... .......... .......... 310 GGACCATGAG GCAGAGTGGT GAGCTCCAAT CGGTATCTGC CATATCCCCT AAGAAAAGAT 77971 .......... .......... .......... .......... .......... .......... 310 GAAGAAGGAG ACTGAACAGA AAAATGCAAA ACAAGAGTTG ATGGTTGGGG ATTTGGTGCT 77911 .......... .......... .......... .......... .......... .......... 310 TGTAGATAGT TCTGGGGTGC CTTGTCTTCT GGGCAAGCTC AAGTCCAAAT GGACTGGCCT 77851 .......... .......... .......... .......... .......... .......... 310 TTACTTGATT ACCCAAGTAT TCCCTCATGG AGTAGTTGAG TTAAAAGCCA AGGAGGGAGT 77791 .......... .......... .......... .......... .......... .......... 310 GTGGTTTAAG AGGAATATAG ATAGAATAAA ACTTTATTGT GGGCATAAAG CATCGGGGAA 77731 .......... .......... .......... .......... .......... .......... 310 TAAAGTGATA GAGGCATACA ATCTTGATGA AGTCTGAGTA ATCAAGGGTC CCCAGTCATG 77671 .......... .......... .......... .......... .......... .......... 310 CCGCGACATT AAATCAGGCG CTTGTTGGGA GGCAACCCAA TATTTATAGT CTTTTTAGTA 77611 .......... .......... .......... .......... .......... .......... 310 ATGGTAGCAT TCTCTACTAA TGGGTTTTAA ATTTGCAGGC ACATCACCAG GAAATTCTGC 77551 .......... .......... .......... .......... .......... .......... 310 AGAAGATCAC TCTGAAACAG TCATCAACGG ACACATGCGA TGGACCGTCG TGCTCTCGAC 77491 .......... .......... .......... .......... .......... .......... 310 GGTCCGTCCT GCACAACCAT GCTGGTTGTC AGAGACCCTA CTCCTAAAGG TCTCTCACAT 77431 .......... .......... .......... .......... .......... .......... 310 TTTCTAAGGG TCCTCCAACG GACATCTACG ACGGACCGTC ATACTCTCGA CGGTTCCTCC 77371 .......... .......... .......... .......... .......... .......... 310 ATCATAACCG TCATGGCGGT TAGAGACCCC TCTCTTAAGG GTCTCCATTT TTGTAAGTGT 77311 .......... .......... .......... .......... .......... .......... 310 CCCACGACTT ACATCGATGA CGGACCGTCA TAATCACAAT GGTCCGTGCT AATTGTCGGC 77251 ||| | ||| .......... .......... .......... .......... .......... AATCGACGGT 320 GCTTTGCGCC CCAGGTTTGC TTCACCTACC ACTCTTGTAT TTCAATTTTT TTATGCATTG 77191 |||||||||| ||||||||| |||||||||| ||||| ||| || | |||| |||||||||| GCTTTGCGCC ACAGGTTTGC TTCACCTACC ACTCTAATAT TT-AGATTTT TTATGCATTG 379 AGTACAATTG CATGTTTTTT TGTTGAGGGT GGGGTAAATG GAAAGTGAGT GTTAGGGTGA 77131 | ||| ||| |||| ||||| ||||| |||| |||||||||| |||||||||| |||||||||| GGGACAGTTG CATGCTTTTT TGTTGGGGGT GGGGTAAATG GAAAGTGAGT GTTAGGGTGA 439 AGTCTGAGTA GCCCAATTCA CTATCCTCTT TTGGGGTTTT CTTGCCTATG TTCTTATTCC 77071 |||||||||| |||||| ||| |||||||||| |||||||||| ||||||| || ||||| |||| AGTCTGAGTA GCCCAACTCA CTATCCTCTT TTGGGGTTTT CTTGCCTGTG TTCTTTTTCC 499 GCAAAAGACT GATTACTTTT TCTGTTGAAC CCGCATGTTT ATATCTTT 77023 ||||||||| |||||||||| | |||||||| | || | || |||| ||| CCAAAAGACT GATTACTTTT TTTGTTGAAC CGACACG-TT ATATATTT 546 hqPGS_C08HBa0027D09.1-_SGN-E243970+ (77260 77023) ******************************************************************************** EST sequence 191 +strand 594 n (File: SGN-E350708+) 1 GGGGATTTAG TGCTTCTATT CAATTCCAGA TTGCGCTTGT TTCCAGGCAA ACTCAAGTCC 61 AAATGGACTG GTCCTTACAC GGTTACCCAA CTATTCCCTC ATGGAGCAGT TGAGTTGGAA 121 ACGAAGGAGG GTGTGCGGTT CAAGGTGAAT GGACAGCGCA TAAAAATCTA TCTCGGACAT 181 GCTGAATCGG CGAATGAAGT GATCGAGGCA TACCATCTTG ATGAAGTCTG AGTAATCAAG 241 TGGCCCCAGT CGTGCCGCGA CATTAAATCA GGCGCTTGTT GGGAGGCAAC CCAATACTTA 301 TCGTCTTTTT AATAATGGTA GCATTTTTTT CTATAAATGG GTTTTAAATT TGCAGGCACA 361 TCACCAAGAA ATTCTGCAGA AAACTACTCC GCAGTAGCCA CTGACGGATA CAACAACGGA 421 CCGTCGTATG CATCCGTCAC ACCAGGTATG TATTTCTGTC ATTTTTGAAA TTAGGGCGCA 481 TACGACGGAA CCTACGATGG GGCGTCGCAA GTGCGATGGA CCGTCGTCGG GGAACCGTTG 541 CGCGATTAAT GAAATCTNAC CGACCCACCC GGCTGGACCT TTTCAAATCT GACC Predicted gene structure (within gDNA segment 80450 to 74672): Exon 1 77924 77500 ( 425 n); cDNA 1 427 ( 427 n); score: 0.798 MATCH C08HBa0027D09.1- SGN-E350708+ 0.798 425 0.715 C PGS_C08HBa0027D09.1-_SGN-E350708+ (77924 77500) Alignment (genomic DNA sequence = upper lines): GGGGATTTGG TGCTTGTAGA TAGTTCTGGG GTGC-CTTGT CTTCTGGGCA AGCTCAAGTC 77866 |||||||| | ||||| || | ||| | ||| ||||| ||| |||| | |||||||| GGGGATTTAG TGCTTCTATT CAATTCCAGA TTGCGCTTGT -TTCCAGGCA AACTCAAGTC 59 CAAATGGACT GGCCTTTACT TGATTACCCA AGTATTCCCT CATGGAGTAG TTGAGTTAAA 77806 |||||||||| || | |||| | ||||||| | |||||||| ||||||| || ||||||| | CAAATGGACT GGTCCTTACA CGGTTACCCA ACTATTCCCT CATGGAGCAG TTGAGTTGGA 119 AGCCAAGGAG GGAGTGTGGT TTAAGAGGAA TATAGATAGA ATAAAACTTT ATTGTGGGCA 77746 | | |||||| || ||| ||| | ||| ||| | | | | |||||| | | || || || AACGAAGGAG GGTGTGCGGT TCAAGGTGAA TGGACAGCGC ATAAAAATCT ATCTCGGACA 179 TAAAGCATCG GGGAATAAAG TGATAGAGGC ATACAATCTT GATGAAGTCT GAGTAATCAA 77686 | | |||| | |||| ||| |||| ||||| |||| ||||| |||||||||| |||||||||| TGCTGAATCG GCGAATGAAG TGATCGAGGC ATACCATCTT GATGAAGTCT GAGTAATCAA 239 GGGTCCCCAG TCATGCCGCG ACATTAAATC AGGCGCTTGT TGGGAGGCAA CCCAATATTT 77626 | | |||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||| || GTGGCCCCAG TCGTGCCGCG ACATTAAATC AGGCGCTTGT TGGGAGGCAA CCCAATACTT 299 ATAGTCTTTT TAGTAATGGT AGCA---TTC TCTACTAATG GGTTTTAAAT TTGCAGGCAC 77569 || ||||||| || ||||||| |||| || |||| |||| |||||||||| |||||||||| ATCGTCTTTT TAATAATGGT AGCATTTTTT TCTATAAATG GGTTTTAAAT TTGCAGGCAC 359 ATCACCAGGA AATTCTGCAG AAGATCACTC TGAAACAGTC ATCAACGGAC ACATGCGATG 77509 ||||||| || |||||||||| || | |||| | | || | | ||||| ||| | | | ATCACCAAGA AATTCTGCAG AAAACTACTC CGCAGTAGCC ACTGACGGAT ACA-ACAACG 418 GACCGTCGT 77500 ||||||||| GACCGTCGT 427 hqPGS_C08HBa0027D09.1-_SGN-E350708+ (77924 77500) ******************************************************************************** EST sequence 24 -strand 589 n (File: SGN-E351864-) 1 TTTATGGTAA CTAGTAGCCT GATGCAAATG CTCACTGCTA GAGGTTTGTT TTCAGGGCTA 61 CCGCCTGAGG ATCCACATGC CCAAATAGCT AAGGTAAGGG CAGTGTGTAA ATGTAGTGTG 121 GGGAGGCCTG ACATGGATCT AGATGTAATA GGGCTCACAG TGTTTCCTCT CTCACTGAAG 181 GGAGAGGCTC CTATATGGTT CACTGAGCTT CCATGCAACT CAATCTTCAC TTGGAACCAA 241 TTAAGAGATG TTTTCTTGGC ACTCTACTAT CCAATCTCGA AGAAACTAAA CCACAAAGAC 301 AGAGTAAATA ATTTTGTGGC ACTACCAGTA GAGTCAGTTA GTAGTTCTTG GGATAGATCA 361 CCTCATTCTT GAGAAGTGTT CCAAATCACT GTATAGATGA TGAGTCACGG AAGAAATAGT 421 TCTATCAGGG ACAGGATGAT AGTAACAAAG AAGTGTTGGA CATTATAGAA GGTGGATCTT 481 ATGGAGAATG CCCTTATGCT GAGATCGCTT AAAAATTAGT GAAAATCTCC CGGAATAACA 541 AAGTTTGGAG TACTAGGAAG TCTGATACAG GGAGAAACAC CTTCGAAGT Predicted gene structure (within gDNA segment 80742 to 78844): Exon 1 80069 79484 ( 586 n); cDNA 1 585 ( 585 n); score: 0.904 MATCH C08HBa0027D09.1- SGN-E351864- 0.904 586 0.995 C PGS_C08HBa0027D09.1-_SGN-E351864- (80069 79484) Alignment (genomic DNA sequence = upper lines): TTTGTGATAA CTAGTAGCCT GATGCAAATG CTCACTGCCA GATGTTTGTT TTCAGGGCTA 80010 ||| || ||| |||||||||| |||||||||| |||||||| | || ||||||| |||||||||| TTTATGGTAA CTAGTAGCCT GATGCAAATG CTCACTGCTA GAGGTTTGTT TTCAGGGCTA 60 CCTTCTGAGG ATCCACATGC CCATATAGCT AAGGTAAGGG CACTGTGTAA AAGTTGTGTG 79950 || |||||| |||||||||| ||| |||||| |||||||||| || ||||||| | || ||||| CCGCCTGAGG ATCCACATGC CCAAATAGCT AAGGTAAGGG CAGTGTGTAA ATGTAGTGTG 120 GGGAGGCCTG ATTTGGATCT AGATGTAATA GGGCTAAGAG TGTTTCCTCT CTCACTGACG 79890 |||||||||| | ||||||| |||||||||| ||||| | || |||||||||| |||||||| | GGGAGGCCTG ACATGGATCT AGATGTAATA GGGCTCACAG TGTTTCCTCT CTCACTGAAG 180 GGAGAGGCTG CTATATGGTT CACTGAGCTC CCATACAACT CAATCTTCAC TTGGAACCAA 79830 ||||||||| |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| GGAGAGGCTC CTATATGGTT CACTGAGCTT CCATGCAACT CAATCTTCAC TTGGAACCAA 240 TTAAGAGATG TTTTCTTAGC ACGCTACTAT CCGGTCACCA AGAAACTAAA CCACAAAGAC 79770 |||||||||| ||||||| || || ||||||| || || | | |||||||||| |||||||||| TTAAGAGATG TTTTCTTGGC ACTCTACTAT CCAATCTCGA AGAAACTAAA CCACAAAGAC 300 AGAGTGAACA ACTTTGTGGC ACTACCAGGA GAGTCAGTTA CTAGTTCTTG GGATAGATTC 79710 ||||| || | | |||||||| |||||||| | |||||||||| ||||||||| ||||||| || AGAGTAAATA ATTTTGTGGC ACTACCAGTA GAGTCAGTTA GTAGTTCTTG GGATAGA-TC 359 ACCTCATACT TGAGAAGTGT TCCAAATCAC TGTATAGATG ATAAGTCAGT GAAGGAATAC 79650 ||||||| || |||||||||| |||||||||| |||||||||| || ||||| |||| |||| ACCTCATTCT TGAGAAGTGT TCCAAATCAC TGTATAGATG ATGAGTCACG GAAGAAATAG 419 TTATATCGGG GACAAGATGA TAACAATAGA GCGGTGTTAA ACACTATAGT AGGTGGATCT 79590 || |||| || |||| ||||| || || | | | ||||| ||| ||||| |||||||||| TTCTATCAGG GACAGGATGA TAGTAACAAA GAAGTGTTGG ACATTATAGA AGGTGGATCT 479 TATGGGGAGT GTCCTTATGC TGAGATCGCT GAAAAATTAG AGAAAATCTC CCGAAATAAC 79530 ||||| || | | |||||||| |||||||||| ||||||||| ||||||||| ||| |||||| TATGGAGAAT GCCCTTATGC TGAGATCGCT TAAAAATTAG TGAAAATCTC CCGGAATAAC 539 AAAGCTTGGA GTACTAGGAA GTCTGATACA GGGAGAAACA CCTTCG 79484 |||| ||||| |||||||||| |||||||||| |||||||||| |||||| AAAGTTTGGA GTACTAGGAA GTCTGATACA GGGAGAAACA CCTTCG 585 hqPGS_C08HBa0027D09.1-_SGN-E351864- (80069 79484) ******************************************************************************** EST sequence 37 +strand 574 n (File: SGN-E550629+) 1 CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 61 TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 121 CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 181 GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTAAT 241 GATAATCAAA AGTCTAACAA TAAAATGTTT TCTTATACGA TGTCTAACAA TACGGAGTCT 301 AACAATGATC CAGAGTCTTA CCTCAAAAAT GATGTTTTTA GAACTATTTA TAGAAAATAA 361 AAACCTAATT AAACAAGGAC TATATTTGCT GGAAATCTGC CAAAACGCGG CTGGGTCGAC 421 GGACCTCACG ACGGATCGTC GTGGTCACGA CAGACCGTCA TGGACTCCGT TGTCCCATAC 481 TTATGCAATT TCTTTTGCTG CTCTCTTCAT TACCCTCGAC GGCATGTATG ACGGACCGTC 541 GTAGGCACAA CGGTCCGTCG AGGGTCTTCG TTCC Predicted gene structure (within gDNA segment 80420 to 83799): Exon 1 81110 81340 ( 231 n); cDNA 1 229 ( 229 n); score: 0.857 Intron 1 81341 81371 ( 31 n); Pd: 0.448 (s: 0.78), Pa: 0.000 (s: 0.74) Exon 2 81372 81730 ( 359 n); cDNA 230 572 ( 343 n); score: 0.825 MATCH C08HBa0027D09.1+ SGN-E550629+ 0.837 590 1.028 C PGS_C08HBa0027D09.1+_SGN-E550629+ (81110 81340,81372 81730) Alignment (genomic DNA sequence = upper lines): CTTCTAAGCG AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAGTTG TTATTTTAGT 81169 ||| | ||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 60 TAGGGTTTAT CTCATTATTT GCCTATGGTT CGCACAACCC TAGTTATGGA GTTTAGTTAC 81229 |||| |||| |||| |||| ||||||||| | ||||| || |||||||||| ||||||||| TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 120 TCATAGACAT AAACACAATA TTCAAATATA GTAGATAAGA ATTCATGTAG TTTCTTCAAT 81289 ||||| ||| || ||||||| |||||||||| | |||||| ||||||||| || ||||| CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 180 GAGAAAGAGT AATATCCAAA AGTTTGCTTG ATTAATCACC AATATTCACT TGCAAGAATC 81349 |||||||||| || ||| | ||||| |||| ||| ||||| || | |||| GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCAC- -......... 229 TCAAAGTAAT CAATAATCTC ACCAAAAGTC TAATGATTAT CAAGAATCTC ACAATACAAT 81409 ||| | | ||||||| || ||| | ||| |||||| ||| .......... .......... ..CAACAAT- TAATGATAAT CAAAAGTCTA ACAATAAAAT 266 ATTTACCAAT AAGGAATTTT ACAATTTAAG AGTCTAACCT AATAGAGTCC AACCTATCTA 81469 ||| | || | | | | |||| | | ||||||| | ||| || | || | | GTTTTCTTAT ACGATGTCTA ACAA-TACGG AGTCTAA-C- AAT-GA-T-- --CC-A--GA 314 CCGTCTAACC TCAAAAATGA TGTTTTTTGA ACTATTTATA AAAAATAAAA ACCTAATTAA 81529 |||| ||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| --GTCTTACC TCAAAAATGA TGTTTTTAGA ACTATTTATA GAAAATAAAA ACCTAATTAA 372 ACAACGACTT TGTTTGCTGG AAATCTGCCA AAACGCGGCT AGGTCGGCGG ACATCGCGAC 81589 |||| |||| | |||||||| |||||||||| |||||||||| ||||| ||| || || |||| ACAAGGACTA TATTTGCTGG AAATCTGCCA AAACGCGGCT GGGTCGACGG ACCTCACGAC 432 GGATCGTCAT GGTCACGACG AACCGTCATG GACTCCATCG TCCCATACTT GTGCAATTTC 81649 |||||||| | ||||||||| ||||||||| |||||| | | |||||||||| ||||||||| GGATCGTCGT GGTCACGACA GACCGTCATG GACTCCGTTG TCCCATACTT ATGCAATTTC 492 TTCTGCTGCT GTTCTTCATT ACCCTCGACG ACAAGTATGA TGGGCCATCA TAGGCACAAC 81709 || ||||||| |||||||| |||||||||| || |||||| || || || |||||||||| TTTTGCTGCT -CTCTTCATT ACCCTCGACG GCATGTATGA CGGACCGTCG TAGGCACAAC 551 GGTCCATCGA GGGTCTTCAT T 81730 ||||| |||| |||||||| | | GGTCCGTCGA GGGTCTTCGT T 572 hqPGS_C08HBa0027D09.1+_SGN-E550629+ (81110 81340,81372 81730) ******************************************************************************** EST sequence 39 +strand 574 n (File: SGN-E550645+) 1 CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 61 TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 121 CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 181 GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTAAT 241 GATAATCAAA AGTCTAACAA TAAAATGTTT TCTTATACGA TGTCTAACAA TACGGAGTCT 301 AACAATGATC CAGAGTCTTA CCTCAAAAAT GATGTTTTTA GAACTATTTA TAGAAAATAA 361 AAACCTAATT AAACAAGGAC TATATTTGCT GGAAATCTGC CAAAACGCGG CTGGGTCGAC 421 GGACCTCACG ACGGATCGTC GTGGTCACGA CAGACCGTCA TGGACTCCGT TGTCCCATAC 481 TTATGCAATT TCTTTTGCTG CTCTCTTCAT TACCCTCGAC GGCATGTATG ACGGACCGTC 541 GTAGGCACAA CGGTCCGACG AGGGTCTTCG TTCC Predicted gene structure (within gDNA segment 80420 to 83799): Exon 1 81110 81340 ( 231 n); cDNA 1 229 ( 229 n); score: 0.857 Intron 1 81341 81371 ( 31 n); Pd: 0.448 (s: 0.78), Pa: 0.000 (s: 0.74) Exon 2 81372 81730 ( 359 n); cDNA 230 572 ( 343 n); score: 0.822 MATCH C08HBa0027D09.1+ SGN-E550645+ 0.836 590 1.028 C PGS_C08HBa0027D09.1+_SGN-E550645+ (81110 81340,81372 81730) Alignment (genomic DNA sequence = upper lines): CTTCTAAGCG AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAGTTG TTATTTTAGT 81169 ||| | ||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 60 TAGGGTTTAT CTCATTATTT GCCTATGGTT CGCACAACCC TAGTTATGGA GTTTAGTTAC 81229 |||| |||| |||| |||| ||||||||| | ||||| || |||||||||| ||||||||| TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 120 TCATAGACAT AAACACAATA TTCAAATATA GTAGATAAGA ATTCATGTAG TTTCTTCAAT 81289 ||||| ||| || ||||||| |||||||||| | |||||| ||||||||| || ||||| CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 180 GAGAAAGAGT AATATCCAAA AGTTTGCTTG ATTAATCACC AATATTCACT TGCAAGAATC 81349 |||||||||| || ||| | ||||| |||| ||| ||||| || | |||| GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCAC- -......... 229 TCAAAGTAAT CAATAATCTC ACCAAAAGTC TAATGATTAT CAAGAATCTC ACAATACAAT 81409 ||| | | ||||||| || ||| | ||| |||||| ||| .......... .......... ..CAACAAT- TAATGATAAT CAAAAGTCTA ACAATAAAAT 266 ATTTACCAAT AAGGAATTTT ACAATTTAAG AGTCTAACCT AATAGAGTCC AACCTATCTA 81469 ||| | || | | | | |||| | | ||||||| | ||| || | || | | GTTTTCTTAT ACGATGTCTA ACAA-TACGG AGTCTAA-C- AAT-GA-T-- --CC-A--GA 314 CCGTCTAACC TCAAAAATGA TGTTTTTTGA ACTATTTATA AAAAATAAAA ACCTAATTAA 81529 |||| ||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| --GTCTTACC TCAAAAATGA TGTTTTTAGA ACTATTTATA GAAAATAAAA ACCTAATTAA 372 ACAACGACTT TGTTTGCTGG AAATCTGCCA AAACGCGGCT AGGTCGGCGG ACATCGCGAC 81589 |||| |||| | |||||||| |||||||||| |||||||||| ||||| ||| || || |||| ACAAGGACTA TATTTGCTGG AAATCTGCCA AAACGCGGCT GGGTCGACGG ACCTCACGAC 432 GGATCGTCAT GGTCACGACG AACCGTCATG GACTCCATCG TCCCATACTT GTGCAATTTC 81649 |||||||| | ||||||||| ||||||||| |||||| | | |||||||||| ||||||||| GGATCGTCGT GGTCACGACA GACCGTCATG GACTCCGTTG TCCCATACTT ATGCAATTTC 492 TTCTGCTGCT GTTCTTCATT ACCCTCGACG ACAAGTATGA TGGGCCATCA TAGGCACAAC 81709 || ||||||| |||||||| |||||||||| || |||||| || || || |||||||||| TTTTGCTGCT -CTCTTCATT ACCCTCGACG GCATGTATGA CGGACCGTCG TAGGCACAAC 551 GGTCCATCGA GGGTCTTCAT T 81730 ||||| ||| |||||||| | | GGTCCGACGA GGGTCTTCGT T 572 hqPGS_C08HBa0027D09.1+_SGN-E550645+ (81110 81340,81372 81730) ******************************************************************************** EST sequence 116 +strand 385 n (File: SGN-E273427+) 1 TTTTGAGCCA AAGAATTATT AATACATGCA AGACACTATT CTAGAATTGT TATTTTAGTT 61 AGGTTTTACC TCAATATTCT CCTATGGTTC CCACAATCCT AGTTATGGAG TTTAGTTAAC 121 CATAGTCATA ATCACAATAT TCAAATATAT CATATAAGAA TTCATGTACT TAATTCAAAG 181 AGAAAGAGTA AAATCTGAGA GTTTTCTTGA TTTATCACAA AAAATCACCA ACAATTAATG 241 ATAATCAAAA GTCTAACAAT AAAATGTTTT CTTATACGAT GTCTAACAAT ACGGAGTCTA 301 ACAATGATCC AGAGTCTTAC CTCAAAAATG ATGTTTTTAG AACTATTTAT AGAAAATAAA 361 AACCTAATTA AACAAGGACT ATATT Predicted gene structure (within gDNA segment 80430 to 82243): Exon 1 81111 81340 ( 230 n); cDNA 1 228 ( 228 n); score: 0.857 Intron 1 81341 81371 ( 31 n); Pd: 0.448 (s: 0.78), Pa: 0.000 (s: 0.74) Exon 2 81372 81543 ( 172 n); cDNA 229 385 ( 157 n); score: 0.756 MATCH C08HBa0027D09.1+ SGN-E273427+ 0.813 402 1.044 C PGS_C08HBa0027D09.1+_SGN-E273427+ (81111 81340,81372 81543) Alignment (genomic DNA sequence = upper lines): TTCTAAGCGA AAGAATTATT AATACATGCA AGACACTATT CTAGAGTTGT TATTTTAGTT 81170 || | ||| | |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TTTTGAGCCA AAGAATTATT AATACATGCA AGACACTATT CTAGAATTGT TATTTTAGTT 60 AGGGTTTATC TCATTATTTG CCTATGGTTC GCACAACCCT AGTTATGGAG TTTAGTTACT 81230 ||| |||| | ||| |||| |||||||||| ||||| ||| |||||||||| |||||||| AGGTTTTACC TCAATATTCT CCTATGGTTC CCACAATCCT AGTTATGGAG TTTAGTTAAC 120 CATAGACATA AACACAATAT TCAAATATAG TAGATAAGAA TTCATGTAGT TTCTTCAATG 81290 ||||| |||| | |||||||| ||||||||| | ||||||| |||||||| | | ||||| | CATAGTCATA ATCACAATAT TCAAATATAT CATATAAGAA TTCATGTACT TAATTCAAAG 180 AGAAAGAGTA ATATCCAAAA GTTTGCTTGA TTAATCACCA ATATTCACTT GCAAGAATCT 81350 |||||||||| | ||| | | |||| ||||| || ||||| | | | |||| AGAAAGAGTA AAATCTGAGA GTTTTCTTGA TTTATCACAA AAAATCAC-- .......... 228 CAAAGTAATC AATAATCTCA CCAAAAGTCT AATGATTATC AAGAATCTCA CAATACAATA 81410 ||| | | | |||||| ||| || | ||| | ||||| ||| .......... .......... .CAACAAT-T AATGATAATC AAAAGTCTAA CAATAAAATG 266 TTTACCAATA AGGAATTTTA CAATTTAAGA GTCTAACCTA ATAGAGTCCA ACCTATCTAC 81470 ||| | ||| | | | | ||| | || |||||| | | || || | || | | TTTTCTTATA CGATGTCTAA CAA-TACGGA GTCTAA-C-A AT-GA-T--- -CC-A--GA- 313 CGTCTAACCT CAAAAATGAT GTTTTTTGAA CTATTTATAA AAAATAAAAA CCTAATTAAA 81530 |||| |||| |||||||||| |||||| ||| ||||||||| |||||||||| |||||||||| -GTCTTACCT CAAAAATGAT GTTTTTAGAA CTATTTATAG AAAATAAAAA CCTAATTAAA 372 CAACGACTTT GTT 81543 ||| |||| | || CAAGGACTAT ATT 385 hqPGS_C08HBa0027D09.1+_SGN-E273427+ (81111 81340,81372 81543) ******************************************************************************** EST sequence 146 +strand 737 n (File: SGN-E369290+) 1 TTTTTTTTTT TTTTTTTTTT TTTAAAATCC AAAAGTTTGC TTGATTAATC ACCAATAATC 61 ACTTGCAAGA ATCTTAAAGT AATCAACAAT CTCACAAAAA GTGTAATGAT TCTCAAAAGT 121 CTAACAATAC AGTGTCTACT AATATGATGT CTAACAATAC GGAGTATAAC CTCAAAAACG 181 AGGTTTTTCG AACTATTTAT AGAAAATAAA AACCTAACTA AACAAGGACT CTATTTGCTG 241 GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA CGGATCGTCA TGGTCACGAT 301 GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC TCTCTTCATT 361 ACCCTCGACG GCAGGTATGA CGGACCGTCA TAGGCACAAC GGTCTATCGA GGGTCTTCGT 421 TTCAACACAC TTGAACTCTT GGAATATGGG TACTGGGACT ACTTCTCTGA ACTTCATGAC 481 GAACCTGCAG GACGGACCGT CATGAACTCC GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT 541 CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT 601 CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT 661 TGGACAGATT TCCTTAAAAA GTAAATCGCT TACTACTGAA TGGAGATGCT TGGCGTCGAA 721 AACATTGAGA ACATGAC Predicted gene structure (within gDNA segment 80443 to 83223): Exon 1 81299 81440 ( 142 n); cDNA 23 163 ( 141 n); score: 0.831 Intron 1 81441 81471 ( 31 n); Pd: 0.000 (s: 0.66), Pa: 0.000 (s: 0.90) Exon 2 81472 81983 ( 512 n); cDNA 164 674 ( 511 n); score: 0.891 PPA cDNA 22 1 MATCH C08HBa0027D09.1+ SGN-E369290+ 0.878 654 0.887 C PGS_C08HBa0027D09.1+_SGN-E369290+ (81299 81440,81472 81983) Alignment (genomic DNA sequence = upper lines): TAATATCCAA AAGTTTGCTT GATTAATCAC CAATATTCAC TTGCAAGAAT CTCAAAGTAA 81358 ||| |||||| |||||||||| |||||||||| ||||| |||| |||||||||| || ||||||| TAAAATCCAA AAGTTTGCTT GATTAATCAC CAATAATCAC TTGCAAGAAT CTTAAAGTAA 82 TCAATAATCT CACCAAAAGT CTAATGATTA TCAAGAATCT CACAATACAA TATTTACCAA 81418 |||| ||||| ||| |||||| |||||||| |||| | ||| |||||||| | | ||| || TCAACAATCT CACAAAAAGT GTAATGATTC TCAAAAGTCT AACAATACAG TGTCTACTAA 142 TAAGGAATTT TACAATTTAA GAGTCTAACC TAATAGAGTC CAACCTATCT ACCGTCTAAC 81478 || | | | |||| | || || |||| TATGATGTCT AACAA-TACG GA........ .......... .......... ...GTATAAC 170 CTCAAAAATG ATGTTTTTTG AACTATTTAT AAAAAATAAA AACCTAATTA AACAACGACT 81538 |||||||| | | |||||| | |||||||||| | |||||||| ||||||| || ||||| |||| CTCAAAAACG AGGTTTTTCG AACTATTTAT AGAAAATAAA AACCTAACTA AACAAGGACT 230 TTGTTTGCTG GAAATCTGCC AAAACGCGGC TAGGTCGGCG GACATCGCGA CGGATCGTCA 81598 | ||||||| |||||||||| |||||||||| | ||||| | || || ||| |||||||||| CTATTTGCTG GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA CGGATCGTCA 290 TGGTCACGAC GAACCGTCAT GGACTCCATC GTCCCATACT TGTGCAATTT CTTCTGCTGC 81658 ||||||||| | |||||||| |||||| || |||||||||| | |||||||| ||| |||| | TGGTCACGAT GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC 350 TGTTCTTCAT TACCCTCGAC GACAAGTATG ATGGGCCATC ATAGGCACAA CGGTCCATCG 81718 | ||||||| |||||||||| | || ||||| | || || || |||||||||| ||||| |||| T-CTCTTCAT TACCCTCGAC GGCAGGTATG ACGGACCGTC ATAGGCACAA CGGTCTATCG 409 AGGGTCTTCA TTTCAAAACA CTTCAACTCT TGGAATCTGG GTACTGGGAT TACTTCTCTG 81778 ||||||||| |||||| ||| ||| |||||| |||||| ||| ||||||||| |||||||||| AGGGTCTTCG TTTCAACACA CTTGAACTCT TGGAATATGG GTACTGGGAC TACTTCTCTG 469 ATCATCATGA TGAACCTACA GGACGGACCG TCACAAGATA CGTAACCCCA CACTTGGTCA 81838 | | |||||| |||||| || |||||||||| ||| | | |||| |||| |||||||||| AACTTCATGA CGAACCTGCA GGACGGACCG TCATGAACTC CGTAGCCCCG CACTTGGTCA 529 GACTTCCCCA TCTTCCTTCA GCAACTTCAC TACGCTGCCA CCTACGGACC ATCACAAGCA 81898 |||||||||| ||||| |||| ||| || ||| |||||||||| ||||| |||| ||||||||| GACTTCCCCA TCTTCTTTCA GCAGCTGCAC TACGCTGCCA CCTACAGACC GTCACAAGCA 589 CGACGGACCG TCATAAGCTC CGTAGGTGGT CTCTTCTGCA TTTCTTCGCT CAAAATCTCC 81958 |||||||||| |||||||||| |||||| || || ||||||| ||||||| || |||||||||| CGACGGACCG TCATAAGCTC TGTAGGTCGT CTATTCTGCA TTTCTTCACT CAAAATCTCC 649 GCATTCAGCT TTGGACAGAT TTCCT 81983 ||||||| || |||||||||| ||||| GCATTCATCT TTGGACAGAT TTCCT 674 hqPGS_C08HBa0027D09.1+_SGN-E369290+ (81299 81440,81472 81983) ******************************************************************************** EST sequence 150 +strand 750 n (File: SGN-E546519+) 1 GAGAGAGAGA CTAGTCTCGA GTTTTTTTTT TTTTTTTTTT AAAATCCGAA AGTTTTCTTG 61 ATTAATCACC AACAATCACT TGCAAGAATT TCAAAGTAAT CAAGAATCTC ACAAAAAGTC 121 TAATGATAAT CAAAAGTCTA ACACTAATAC ACAGAGTCTA ATAATTATCC AGAGTCTAAC 181 CTCAAAAATG AGGTTTTTTT GAACTATTTA TAGAAATTAA AAACCTAATT AAATAAGGAC 241 TCTATTTGCT GGAAATTTGT CAAAACGCGG CTGGGTCAAC GGACCTCGCG ACGGATCATC 301 GTGGTCACGA CGGACCGTCA TGGACTCCGT CGTCCCATAC TTGATGAAAT TTCTTCTGCT 361 TCTCTCTTCA TTACCCTCGA CGGCAAGTAT GACGGACCGT CAAAGGCACA ACGGTCCGTC 421 GAGGGTCTTC GTTCCAAAAC ACTTAAACTC TTGGAATATG GGTACTGGGA TTACTTCTCT 481 GAACTTCATG AAGAACCTGC AGGACGGACC GTCATAGACA CGAAGGACCG TCATGGACTC 541 CGTAACCCCA CACTTGGTCA GACTTCCCCA TATTCCTTCA GCAGCTGCAC TATGCTGCCA 601 CCTACGTACC GTCACAAGCA TGACGGACCG TCACAAGCTC CGTAGGTGGT CTCTTCTGCA 661 TTTCTTCACT CAAAAACCTC TGCATACATC TTTGAACAGA TTTCCTTGGA ACTGTTGTGT 721 GGACCTTGAA AACTGACTAT NATTGCCTTG Predicted gene structure (within gDNA segment 79142 to 83385): Exon 1 81299 81408 ( 110 n); cDNA 40 149 ( 110 n); score: 0.864 Intron 1 81409 81447 ( 39 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.66) Exon 2 81448 81983 ( 536 n); cDNA 150 706 ( 557 n); score: 0.782 PPA cDNA 39 21 MATCH C08HBa0027D09.1+ SGN-E546519+ 0.796 646 0.861 C PGS_C08HBa0027D09.1+_SGN-E546519+ (81299 81408,81448 81983) Alignment (genomic DNA sequence = upper lines): TAATATCCAA AAGTTTGCTT GATTAATCAC CAATATTCAC TTGCAAGAAT CTCAAAGTAA 81358 ||| |||| | |||||| ||| |||||||||| ||| | |||| |||||||||| ||||||||| TAAAATCCGA AAGTTTTCTT GATTAATCAC CAACAATCAC TTGCAAGAAT TTCAAAGTAA 99 TCAATAATCT CACCAAAAGT CTAATGATTA TCAAGAATCT CACAATACAA TATTTACCAA 81418 |||| ||||| ||| |||||| |||||||| | |||| | ||| ||| || | TCAAGAATCT CACAAAAAGT CTAATGATAA TCAAAAGTCT AACACTAATA .......... 149 TAAGGAATTT TACAATTTAA GAGTCTAACC TAATAGAGTC CAACCTATCT ACCGTCTAAC 81478 | | || | | |||| | ||||||| .......... .......... .........C ACAGAGTCTA ATAATTATCC AGAGTCTAAC 180 CTCAAAAATG ATG-TTTTTT GAACTATTTA TAAAAAATAA AAACCTAATT AAACAACGAC 81537 |||||||||| | | |||||| |||||||||| || ||| ||| |||||||||| ||| || ||| CTCAAAAATG AGGTTTTTTT GAACTATTTA TAGAAATTAA AAACCTAATT AAATAAGGAC 240 TTTGTTTGCT GGAAATCTGC CAAAACGCGG CTAGGTCGGC GGACATCGCG ACGGATCGTC 81597 | | |||||| |||||| || |||||||||| || |||| | |||| ||||| ||||||| || TCTATTTGCT GGAAATTTGT CAAAACGCGG CTGGGTCAAC GGACCTCGCG ACGGATCATC 300 ATGGTCACGA CGAACCGTCA TGGACTCCAT CGTCCCATAC TTG-TGCAAT TTCTTCTGCT 81656 ||||||||| || ||||||| |||||||| | |||||||||| ||| || ||| |||||||||| GTGGTCACGA CGGACCGTCA TGGACTCCGT CGTCCCATAC TTGATGAAAT TTCTTCTGCT 360 GCTGTTCTTC ATTACCCTCG ACGACAAGTA TGATGGGCCA TCATAGGCAC AACGGTCCAT 81716 || ||||| |||||||||| ||| |||||| ||| || || ||| |||||| |||||||| | TCT-CTCTTC ATTACCCTCG ACGGCAAGTA TGACGGACCG TCAAAGGCAC AACGGTCCGT 419 CGAGGGTCTT CATTTCAAAA CACTTCAACT CTTGGAATCT GGGTACTGGG ATTACTTCTC 81776 |||||||||| | || ||||| ||||| |||| |||||||| | |||||||||| |||||||||| CGAGGGTCTT CGTTCCAAAA CACTTAAACT CTTGGAATAT GGGTACTGGG ATTACTTCTC 479 TGATCATCAT GATGAACCTA CAGGACGGAC CG---T---C AC-AA-GA-- ----T--A-- 81818 ||| | |||| || |||||| |||||||||| || | | || || || | | TGAACTTCAT GAAGAACCTG CAGGACGGAC CGTCATAGAC ACGAAGGACC GTCATGGACT 539 -CGTAACCCC ACACTTGGTC AGACTTCCCC ATCTTCCTTC AGCAACTTCA CTACGCTGCC 81877 ||||||||| |||||||||| |||||||||| || ||||||| |||| || || ||| |||||| CCGTAACCCC ACACTTGGTC AGACTTCCCC ATATTCCTTC AGCAGCTGCA CTATGCTGCC 599 ACCTACGGAC CATCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG TCTCTTCTGC 81937 ||||||| || | |||||||| | |||||||| |||| ||||| |||||||||| |||||||||| ACCTACGTAC CGTCACAAGC ATGACGGACC GTCACAAGCT CCGTAGGTGG TCTCTTCTGC 659 ATTTCTTCGC TC-AAAATCT CCGCATTCAG CTTTGGACAG ATTTCCT 81983 |||||||| | || |||| || | |||| || ||||| |||| ||||||| ATTTCTTCAC TCAAAAACCT CTGCATACAT CTTTGAACAG ATTTCCT 706 hqPGS_C08HBa0027D09.1+_SGN-E546519+ (81299 81408,81448 81983) ******************************************************************************** EST sequence 323 -strand 787 n (File: SGN-E369291-) 1 TTTTTTTTTT TTTTTTTTTT TTTTAAAATT CAAAAAGTTT GGTTGATTAA TCACCAATAA 61 TCACTGCAAA GAATCTTAAA GTAATCAACA ATCTCACAAA AAGTGTAATG ATTCTCAAAA 121 GTCTAACAAT ACAGTGTCTA CTAATATGAT GTCTAACAAT ACGGAGTATA ACCTCAAAAA 181 CGAGGTTTTT CGAACTATTT ATAGAAAATA AAAACCTAAC TAAACAAGGA CTCTATTTGC 241 TGGAAATCTG CCAAAACGCG GCTGGGTCGA CAGAACTCAC GACGGATCGT CATGGTCACG 301 ATGGACCGTC ATGGACTCTG TCGTCCCATA CTTATGCAAT TTCTTTTGCT TCTCTCTTCA 361 TTACCCTCGA CGGCAGGTAT GACGGACCGT CATAGGCACA ACGGTCTATC GAGGGTCTTC 421 GTTTCAACAC ACTTGAACTC TTGGAATATG GGTACTGGGA CTACTTCTCT GAACTTCATG 481 ACGAACCTGC AGGACGGACC GTCATGAACT CCGTAGCCCC GCACTTGGTC AGACTTCCCC 541 ATCTTCTTTC AGCAGCTGCA CTACGCTGCC ACCTACAGAC CGTCACAAGC ACGACGGACC 601 GTCATAAGCT CTGTAGGTCG TCTATTCTGC ATTTCTTCAC TCAAAATCTC CGCATTCATC 661 TTTGGACAGA TTTCCTTAAA AAGTAAATCG CTTACTACTG AATGGAGATG CTTGGCGTCG 721 AAAACATTGA GAACATGACC ACCAGTATAT CTTTTTCGTG AGATAAACCT TGCACCATAC 781 GTCCATA Predicted gene structure (within gDNA segment 78582 to 83693): Exon 1 81307 81440 ( 134 n); cDNA 33 165 ( 133 n); score: 0.799 Intron 1 81441 81471 ( 31 n); Pd: 0.000 (s: 0.66), Pa: 0.000 (s: 0.90) Exon 2 81472 81989 ( 518 n); cDNA 166 682 ( 517 n); score: 0.888 PPA cDNA 24 1 MATCH C08HBa0027D09.1+ SGN-E369291- 0.870 652 0.828 C PGS_C08HBa0027D09.1+_SGN-E369291- (81307 81440,81472 81989) Alignment (genomic DNA sequence = upper lines): AAAAGTTTGC TTGATTAATC ACCAATATTC ACTTGCAAGA ATCTCAAAGT AATCAATAAT 81366 ||||||||| |||||||||| ||||||| || ||| |||| |||| ||||| |||||| ||| AAAAGTTTGG TTGATTAATC ACCAATAATC ACTGCAAAGA ATCTTAAAGT AATCAACAAT 92 CTCACCAAAA GTCTAATGAT TATCAAGAAT CTCACAATAC AATATTTACC AATAAGGAAT 81426 ||||| |||| || ||||||| | |||| | | || ||||||| | | | ||| |||| | | CTCACAAAAA GTGTAATGAT TCTCAAAAGT CTAACAATAC AGTGTCTACT AATATGATGT 152 TTTACAATTT AAGAGTCTAA CCTAATAGAG TCCAACCTAT CTACCGTCTA ACCTCAAAAA 81486 | |||| | || || || |||||||||| CTAACAA-TA CGGA...... .......... .......... .....GTATA ACCTCAAAAA 180 TGATGTTTTT TGAACTATTT ATAAAAAATA AAAACCTAAT TAAACAACGA CTTTGTTTGC 81546 || |||||| ||||||||| ||| |||||| ||||||||| ||||||| || || | ||||| CGAGGTTTTT CGAACTATTT ATAGAAAATA AAAACCTAAC TAAACAAGGA CTCTATTTGC 240 TGGAAATCTG CCAAAACGCG GCTAGGTCGG CGGACATCGC GACGGATCGT CATGGTCACG 81606 |||||||||| |||||||||| ||| ||||| | || || | |||||||||| |||||||||| TGGAAATCTG CCAAAACGCG GCTGGGTCGA CAGAACTCAC GACGGATCGT CATGGTCACG 300 ACGAACCGTC ATGGACTCCA TCGTCCCATA CTTGTGCAAT TTCTTCTGCT GCTGTTCTTC 81666 | | |||||| |||||||| |||||||||| ||| |||||| ||||| |||| || ||||| ATGGACCGTC ATGGACTCTG TCGTCCCATA CTTATGCAAT TTCTTTTGCT TCT-CTCTTC 359 ATTACCCTCG ACGACAAGTA TGATGGGCCA TCATAGGCAC AACGGTCCAT CGAGGGTCTT 81726 |||||||||| ||| || ||| ||| || || |||||||||| ||||||| || |||||||||| ATTACCCTCG ACGGCAGGTA TGACGGACCG TCATAGGCAC AACGGTCTAT CGAGGGTCTT 419 CATTTCAAAA CACTTCAACT CTTGGAATCT GGGTACTGGG ATTACTTCTC TGATCATCAT 81786 | |||||| | ||||| |||| |||||||| | |||||||||| | |||||||| ||| | |||| CGTTTCAACA CACTTGAACT CTTGGAATAT GGGTACTGGG ACTACTTCTC TGAACTTCAT 479 GATGAACCTA CAGGACGGAC CGTCACAAGA TACGTAACCC CACACTTGGT CAGACTTCCC 81846 || |||||| |||||||||| ||||| | | |||| ||| | |||||||| |||||||||| GACGAACCTG CAGGACGGAC CGTCATGAAC TCCGTAGCCC CGCACTTGGT CAGACTTCCC 539 CATCTTCCTT CAGCAACTTC ACTACGCTGC CACCTACGGA CCATCACAAG CACGACGGAC 81906 ||||||| || ||||| || | |||||||||| ||||||| || || ||||||| |||||||||| CATCTTCTTT CAGCAGCTGC ACTACGCTGC CACCTACAGA CCGTCACAAG CACGACGGAC 599 CGTCATAAGC TCCGTAGGTG GTCTCTTCTG CATTTCTTCG CTCAAAATCT CCGCATTCAG 81966 |||||||||| || |||||| |||| ||||| ||||||||| |||||||||| ||||||||| CGTCATAAGC TCTGTAGGTC GTCTATTCTG CATTTCTTCA CTCAAAATCT CCGCATTCAT 659 CTTTGGACAG ATTTCCTGCA AAA 81989 |||||||||| ||||||| | ||| CTTTGGACAG ATTTCCTTAA AAA 682 hqPGS_C08HBa0027D09.1+_SGN-E369291- (81307 81440,81472 81989) ******************************************************************************** EST sequence 171 -strand 731 n (File: SGN-E261921-) 1 AATATCACTG CAAAAGATCT TAAAGTAATC ACCAATCTCA CAAAAAGTGT AATGATTCTC 61 AAAAGTCTAA CAATACAGTG TCTACTAATA TGATGTCTAA CAATACGGAG TATAACCTCA 121 AAAACGAGGT TTTTCGAACT ATTTATAGAA AATAAAAACC TAACTAAACA AGGACTCTAT 181 TTGCTGGAAA TCTGCCAAAA CGCGGCTGGG TCGACAGAAC TCACGACGGA TCGTCATGGT 241 CACGATGGAC CGTCATGGAC TCTGTCGTCC CATACTTATG CAATTTCTTT TGCTTCTCTC 301 TTCATTACCC TCGACGGCAG GTATGACGGA CCGTCATAGG CACAACGGTC TATCGAGGGT 361 CTTCGTTTCA ACACACTTGA ACTCTTGGAA TATGGGTACT GGGACTACTT CTCTGAACTT 421 CATGACGAAC CTGCAGGACG GACCGTCATG AACTCCGTAG CCCCGCACTT GGTCAGACTT 481 CCCCATCTTC TTTCAGCAGC TGCACTACGC TGCCACCTAC AGACCGTCAC AAGCACGACG 541 GACCGTCATA AGCTCTGTAG GTCGTCTATT CTGCATTTCT TCACTCAAAA TCTCCGCATT 601 CATCTTTGGA CAGATTTCCT TAAAAAGTAA ATCGCTTACT ACTGAATGGA GATGCTTGGC 661 GTCGAAAACA TTGAGAACAT GACCACCAGT ATATCTTTTT CGTGAGATAA ACCTTGCACC 721 ATACGTCCAT A Predicted gene structure (within gDNA segment 79142 to 83693): Exon 1 81330 81440 ( 111 n); cDNA 1 109 ( 109 n); score: 0.739 Intron 1 81441 81471 ( 31 n); Pd: 0.000 (s: 0.66), Pa: 0.000 (s: 0.90) Exon 2 81472 81989 ( 518 n); cDNA 110 626 ( 517 n); score: 0.888 MATCH C08HBa0027D09.1+ SGN-E261921- 0.862 629 0.860 C PGS_C08HBa0027D09.1+_SGN-E261921- (81330 81440,81472 81989) Alignment (genomic DNA sequence = upper lines): AATATTCACT TGCAAGAATC TCAAAGTAAT CAATAATCTC ACCAAAAGTC TAATGATTAT 81389 ||||| |||| || ||| | |||||||| || |||||| || |||||| |||||||| | AATAT-CACT GCAAAAGATC TTAAAGTAAT CACCAATCTC ACAAAAAGTG TAATGATTCT 59 CAAGAATCTC ACAATACAAT ATTTACCAAT AAGGAATTTT ACAATTTAAG AGTCTAACCT 81449 ||| | ||| |||||||| | | ||| ||| | | | | |||| | | | CAAAAGTCTA ACAATACAGT GTCTACTAAT ATGATGTCTA ACAA-TACGG A......... 109 AATAGAGTCC AACCTATCTA CCGTCTAACC TCAAAAATGA TGTTTTTTGA ACTATTTATA 81509 || ||||| ||||||| || |||||| || |||||||||| .......... .......... ..GTATAACC TCAAAAACGA GGTTTTTCGA ACTATTTATA 147 AAAAATAAAA ACCTAATTAA ACAACGACTT TGTTTGCTGG AAATCTGCCA AAACGCGGCT 81569 ||||||||| |||||| ||| |||| |||| | |||||||| |||||||||| |||||||||| GAAAATAAAA ACCTAACTAA ACAAGGACTC TATTTGCTGG AAATCTGCCA AAACGCGGCT 207 AGGTCGGCGG ACATCGCGAC GGATCGTCAT GGTCACGACG AACCGTCATG GACTCCATCG 81629 ||||| | | | || |||| |||||||||| |||||||| | ||||||||| ||||| ||| GGGTCGACAG AACTCACGAC GGATCGTCAT GGTCACGATG GACCGTCATG GACTCTGTCG 267 TCCCATACTT GTGCAATTTC TTCTGCTGCT GTTCTTCATT ACCCTCGACG ACAAGTATGA 81689 |||||||||| ||||||||| || |||| || |||||||| |||||||||| || |||||| TCCCATACTT ATGCAATTTC TTTTGCTTCT -CTCTTCATT ACCCTCGACG GCAGGTATGA 326 TGGGCCATCA TAGGCACAAC GGTCCATCGA GGGTCTTCAT TTCAAAACAC TTCAACTCTT 81749 || || ||| |||||||||| |||| ||||| |||||||| | ||||| |||| || ||||||| CGGACCGTCA TAGGCACAAC GGTCTATCGA GGGTCTTCGT TTCAACACAC TTGAACTCTT 386 GGAATCTGGG TACTGGGATT ACTTCTCTGA TCATCATGAT GAACCTACAG GACGGACCGT 81809 ||||| |||| |||||||| | |||||||||| | |||||| |||||| ||| |||||||||| GGAATATGGG TACTGGGACT ACTTCTCTGA ACTTCATGAC GAACCTGCAG GACGGACCGT 446 CACAAGATAC GTAACCCCAC ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG CAACTTCACT 81869 || | | | ||| |||| | |||||||||| |||||||||| |||| ||||| || || |||| CATGAACTCC GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG CAGCTGCACT 506 ACGCTGCCAC CTACGGACCA TCACAAGCAC GACGGACCGT CATAAGCTCC GTAGGTGGTC 81929 |||||||||| |||| |||| |||||||||| |||||||||| ||||||||| |||||| ||| ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT CATAAGCTCT GTAGGTCGTC 566 TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTGCAAAA 81989 | |||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| |||| |||| TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT TGGACAGATT TCCTTAAAAA 626 hqPGS_C08HBa0027D09.1+_SGN-E261921- (81330 81440,81472 81989) ******************************************************************************** EST sequence 55 +strand 695 n (File: SGN-E241731+) 1 TCAGAGTTAT TTTCAATTTG TTATTACTAT TAGTTAGTCA ATTATTTCTT TAGAAAACAA 61 AGACAATAAA AAGGGGGGTT TTAGTTCTAA ATGAATGGAA ATAGCTAGCT AAATTTAAGT 121 AGGCAACTAA CAAATTCAAA TGTTGGAATT TAATCAAATA ATATAATTAA CTAGGGTTTA 181 AGTGTTCTCC ACAAGTTCCT AATTTAATAA TTCTAACTAT AACAATTCTT TCCTAGTATC 241 TTGCATACAA AGTAATAAGT TATGTATTTC TATATCCTTG GTCTTGCATC TAGAAAATAT 301 CACTACGCAC CTTGGTCCGT CTACGTGTGT TGCTATATAA ACCCTTACCA TTACCTCATA 361 TTAAGCATTG TATTCGATAT TTGACTAAGT TATTACCTCG TACCAATCAA TACTAGCCTA 421 TCAAAAAGTA TACACTAAAT TTATGTTAAT AATTCTTTTG CTATTATCTA CCTTCTTGGT 481 CCGGCAAGTA GCACTAAGGC GAGTTCTAAT GTTGACCATC CGTTAAAAAG ACTTCTAAGC 541 AAAACAATTA TCAATACATG CAAGACACTA TTCTAGAATT GTTATTTTAG TTAGATTTTA 601 CCTCATTATT CACCCATGGT TCCCACAACC ATAGTTATGT AGCTTAGTTA CCCATAGTCA 661 TAATCACAAT ATTCATATAT ATCTAATAAT AGAAT Predicted gene structure (within gDNA segment 78057 to 82792): Exon 1 80589 81259 ( 671 n); cDNA 3 681 ( 679 n); score: 0.824 MATCH C08HBa0027D09.1+ SGN-E241731+ 0.824 671 0.965 C PGS_C08HBa0027D09.1+_SGN-E241731+ (80589 81259) Alignment (genomic DNA sequence = upper lines): AGTCTTAACT TCAACCTGTT ATTACTATTC TTTGGTCAAT GACTTCCTTG GAAAGCAAAA 80648 || ||| | |||| |||| ||||||||| || |||||| | ||| || |||| |||| AGAGTTATTT TCAATTTGTT ATTACTATTA GTTAGTCAAT TATTTCTTTA GAAAACAAAG 62 ACAAT-AAAT GGGGGTTTCT ATTTCTAAAT GAGTAAAATT AATTA-AAAA ACTTGA-CA- 80704 ||||| ||| ||||| || | | |||||||| || | || | | || || | || | | ACAATAAAAA GGGGGGTTTT AGTTCTAAAT GAATGGAAAT AGCTAGCTAA ATTTAAGTAG 122 GAGACAAACA ACTTTGAATG TTGGATTTTA ATCAATTAAT CAAAGTAACT AGGGTTTACA 80764 | || |||| | || |||| ||||| |||| ||||| |||| || ||||| |||||||| GCAACTAACA AATTCAAATG TTGGAATTTA ATCAAATAAT ATAATTAACT AGGGTTTAAG 182 TGTTCCCCAC AGGTTCATAA CTTGACAACT CCAACTATAA CAATTCTTTC CTAGTATCTT 80824 ||||| |||| | |||| ||| || | || | | |||||||| |||||||||| |||||||||| TGTTCTCCAC AAGTTCCTAA TTTAATAATT CTAACTATAA CAATTCTTTC CTAGTATCTT 242 GCATGCAAAG TGATAAGTTA TGTATTTCTA AATCCTTGGT CCGGCATCTA GAAAATCTCA 80884 |||| ||||| | |||||||| |||||||||| ||||||||| | ||||||| |||||| ||| GCATACAAAG TAATAAGTTA TGTATTTCTA TATCCTTGGT CTTGCATCTA GAAAATATCA 302 CTCCGCACCT TGGTCCGGCT ACGTGTGTTG CTATCCTAAC CCTTATCCTT ACCTCATATT 80944 || ||||||| ||||||| || |||||||||| |||| ||| ||||| | || |||||||||| CTACGCACCT TGGTCCGTCT ACGTGTGTTG CTATATAAAC CCTTACCATT ACCTCATATT 362 AAGCATCGTA TTCGATATTT GACTAAGTTA TTACCTTGTA CCAATCAATA CTAGCCTATT 81004 |||||| ||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||| AAGCATTGTA TTCGATATTT GACTAAGTTA TTACCTCGTA CCAATCAATA CTAGCCTATC 422 AGATAGTATA CACTAAATCT ATGTTAATAA TTCTTTTCCT ATTATCAATC TCCTTGGTCC 81064 | | |||||| |||||||| | |||||||||| ||||||| || |||||| | | | |||||||| AAAAAGTATA CACTAAATTT ATGTTAATAA TTCTTTTGCT ATTATCTACC TTCTTGGTCC 482 GGCACGTAGC A-T---TCGA GTTCTAACGT TGGCCATCTG TTAAAAGGAC TTCTAAGCGA 81120 |||| ||||| | | ||| ||||||| || || ||||| | |||||| ||| |||||||| | GGCAAGTAGC ACTAAGGCGA GTTCTAATGT TGACCATCCG TTAAAAAGAC TTCTAAGCAA 542 AAGAATTATT AATACATGCA AGACACTATT CTAGAGTTGT TATTTTAGTT AGGGTTTATC 81180 || |||||| |||||||||| |||||||||| ||||| |||| |||||||||| || |||| | AACAATTATC AATACATGCA AGACACTATT CTAGAATTGT TATTTTAGTT AGATTTTACC 602 TCATTATTTG CCTATGGTTC GCACAACCCT AGTTATGGAG TTTAGTTACT CATAGACATA 81240 |||||||| || ||||||| ||||||| | ||||||| || |||||||| ||||| |||| TCATTATTCA CCCATGGTTC CCACAACCAT AGTTATGTAG CTTAGTTACC CATAGTCATA 662 AACACAATAT TCAAATATA 81259 | |||||||| ||| ||||| ATCACAATAT TCATATATA 681 hqPGS_C08HBa0027D09.1+_SGN-E241731+ (80589 81259) ******************************************************************************** EST sequence 8 +strand 716 n (File: SGN-E578039+) 1 CGAGGGTCTT TGTTCTAATA CACTTCAACT CTTGGAATTT GGGTACTGGG ATCACTTCTC 61 TGAACTTCAC GACGAACCTG CAGGACGGAC CGTCAGATCC ACGACGGACC GTCACAAGCT 121 TCGTAATCCC ACACTTAGTC AGACTTCCCT ATCTTCCTTC AGCAGCTGCA CTACGCTTCC 181 ACCTACGGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG TTTCTTCTGC 241 ATTTCTTCGC TCAAAATCTC CGCATTCAGC TTTGGACAGA TTTCCTGCAA AACAAAGAGT 301 AACTTATATA AAAATTAGCA CAAAAAGGCT TTTGGACACA CTAAGCTTAA GGAAAAAGTA 361 TTAATAATAC CGTGAAACCA CGGTATATCA ACACCCTCAA CTTAAATTAG TTGTTTGTCC 421 TCAAGCGACG CACTATGACT CACTACACAA TCTTTGTACA ATAGTATCCA TGTTTTATCC 481 TTTGCAATCA TTTGGCTATC AATCCCGATT AATCTCATCA AATCTATGCA TGCTATCACT 541 ATTAGGTTTG AATTTTGTGG GATCAGAATA TGACACAGAC TTACCATGCA CTAACACCTA 601 TCCTCTTCAA TTTCTCACCG AGGTGCTAAC AATTCTAGTA TTGCAACTAG TGTCCTCACT 661 ATAAGACAAA ATCCTCCTTT TTCACACAGT GATTTTAGTT TGAGTATAAG GATTAC Predicted gene structure (within gDNA segment 79370 to 86972): Exon 1 81800 82088 ( 289 n); cDNA 103 390 ( 288 n); score: 0.941 Intron 1 82089 83747 (1659 n); Pd: 0.000 (s: 0.90), Pa: 0.321 (s: 0) Exon 2 83748 83770 ( 23 n); cDNA 391 410 ( 20 n); score: 0.739 MATCH C08HBa0027D09.1+ SGN-E578039+ 0.941 312 0.436 C PGS_C08HBa0027D09.1+_SGN-E578039+ (81800 82088,83748 83770) Alignment (genomic DNA sequence = upper lines): GACGGACCGT CACAAGATAC GTAACCCCAC ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG 81859 |||||||||| |||||| | | |||| ||||| |||| ||||| ||||||| || |||||||||| GACGGACCGT CACAAGCTTC GTAATCCCAC ACTTAGTCAG ACTTCCCTAT CTTCCTTCAG 162 CAACTTCACT ACGCTGCCAC CTACGGACCA TCACAAGCAC GACGGACCGT CATAAGCTCC 81919 || || |||| ||||| |||| ||||||||| |||||||||| |||||||||| |||||||||| CAGCTGCACT ACGCTTCCAC CTACGGACCG TCACAAGCAC GACGGACCGT CATAAGCTCC 222 GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT 81979 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGGTGGTT TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT 282 TCCTGCAAAA CAAAGAGAAA CTTATATAAA AATTAGCACA AAAAAGGCTT TTGGACACAC 82039 |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| |||||||||| TCCTGCAAAA CAAAGAGTAA CTTATATAAA AATTAGCAC- AAAAAGGCTT TTGGACACAC 341 TAAACTTAAG AAAAAAATAT TAATTATACC ATGAAACCAC GGTATATCAG TGTCTAGAAA 82099 ||| |||||| ||||| ||| |||| ||||| ||||||||| ||||||||| TAAGCTTAAG GAAAAAGTAT TAATAATACC GTGAAACCAC GGTATATCA. .......... 390 CATGTAAATG GGCTTAACTA CCCATGCTCC CTACTTTTTG TCACACCCCA AGCTTTCCCT 82159 .......... .......... .......... .......... .......... .......... 390 AGATGTAGCC CACACCCAAT GACCATTATT GGCCTTGAGC GAACCCTTGA CCTGACTTAC 82219 .......... .......... .......... .......... .......... .......... 390 TTAACTTAGC GGAATACTCA ACTCAACTAA ATAAAGAAAT AAAATATGGT TAAAAGTAAT 82279 .......... .......... .......... .......... .......... .......... 390 ACTTAGTATG ATAGTCTATC CAAAATGGCA CTTAAGTCTC AACACTTGAA GATTTGAAAT 82339 .......... .......... .......... .......... .......... .......... 390 TACATAGTAA ATAAGACTCA AAAACTGAAC TACTAAATGT CTATGAAGCC TCTAAAGTGA 82399 .......... .......... .......... .......... .......... .......... 390 CTGAGATGAA TGTTGAGAAA AAACCCACAA CATTCAATTG AACTAACTAG AGATCAATAA 82459 .......... .......... .......... .......... .......... .......... 390 AAAGATCATC CGGGATGCAA GGAGGCTCAT CACTGACTTT AGACCCCAAA TTGGATCAAC 82519 .......... .......... .......... .......... .......... .......... 390 TAAGTGTTGC ATGCTGATCC TGGTTACCTG CGTCTTCATC ATAAGACGAT GCAGAACAAC 82579 .......... .......... .......... .......... .......... .......... 390 TAGCATCAGT ACATTTAATG TACGAGTATG TGAGTTGGAA TGCTAAACAC AACTATAAGG 82639 .......... .......... .......... .......... .......... .......... 390 CTTGAAAGGA GTAAGAATGA ATTTACCTTG GCTCTGTTCA ACTCAAGAAG TCATAACTCA 82699 .......... .......... .......... .......... .......... .......... 390 ATATAAAGCA GTAAAGATGT ATGCAATATA AGGAGATCTC TTGAAAATCA TATTTTCATT 82759 .......... .......... .......... .......... .......... .......... 390 TTCGGTTCTC AATACTAAAC CCAAATATTT AGCTCATATG TTTTTAAAAC AACATCATTG 82819 .......... .......... .......... .......... .......... .......... 390 GTTTGATTTA ATTTCTCAAA CATATATTTA AAAGATCTCT TGAAAATCAT ATTTTCATTT 82879 .......... .......... .......... .......... .......... .......... 390 TTGTTTTACT AAAACTAACC ATAGTCTATG TGGAAGTCTG TATTCATCTC TTTCTCAAAT 82939 .......... .......... .......... .......... .......... .......... 390 GTTTGAAAAC ATTTTGTTTA AACTCTTAAG GACTACTTAA TTCTCGTATA ACACTTGAGA 82999 .......... .......... .......... .......... .......... .......... 390 AATGAACTCA CCTTGTTACG CTTTGCTTAA CTTGAAACTT AATTCTTAAG GAATACTTAG 83059 .......... .......... .......... .......... .......... .......... 390 TTCCCTTATA GCTTTTGAGA ATTTAATTCA ACTCTTTACT CTTTGCTCAA CTCATTTCTT 83119 .......... .......... .......... .......... .......... .......... 390 GAGACTTAAA AAAAAGTTAT AATGTTTGTT AAGACTCTTG AATGCTTTAG GGACTTACTT 83179 .......... .......... .......... .......... .......... .......... 390 TGACTTACTT CTTAACTTTT AAACTTGACT CTTAACTTCT TTGATTTTGA TCTTAACTTT 83239 .......... .......... .......... .......... .......... .......... 390 TCTTGAATTG GATTATGGAT TCAAGGATCA TGATCTCATA TTTAGGGACA ATTTCATGAT 83299 .......... .......... .......... .......... .......... .......... 390 GTTTAGATAT ACTTTAGAGT GTTTGAATCA GCTAGGAATA ATAAGTACAT CCCTTAGGAA 83359 .......... .......... .......... .......... .......... .......... 390 CTAGCACGAA AAGATGGGGG AGAAATGGGG ACTCTAGGTG ATCCTGGTGC TCTCAGAGGC 83419 .......... .......... .......... .......... .......... .......... 390 GCGGGGCGCT AGAGCAAGAC TGACAGAAAT CTACTTAGCT CATTTACCAC TACATTAGCT 83479 .......... .......... .......... .......... .......... .......... 390 TTTTCTGGGT GATATAAAAT AGTAATATTG TAGTCTTTCA ATAACTCCAT CCACTTTTTT 83539 .......... .......... .......... .......... .......... .......... 390 TCCCTCTAAT TCAAATCCTT CTAAATGAAC ACATATTGTA ACATGCAATG ATTTTTATAC 83599 .......... .......... .......... .......... .......... .......... 390 ACTTTTAACT TGACCCCATA GAGATAATGC CTCAATTGCT TTAGTGCAAA CACAACTACA 83659 .......... .......... .......... .......... .......... .......... 390 ACCAACTTCA AATCATGGTT CAGATAGTTA CATTCATGGA CTTTCAATTG TATTGAAACA 83719 .......... .......... .......... .......... .......... .......... 390 TAACAATTAA ATTCATCTCC TTCATTAGCA CTACACTCAA ATTAGAATCA G 83770 | | || ||||| ||| ||| | | .......... .......... ........-A C-ACCCTCAA CTTA-AATTA G 410 hqPGS_C08HBa0027D09.1+_SGN-E578039+ (81800 82088,83748 83770) ******************************************************************************** EST sequence 333 -strand 758 n (File: SGN-E349968-) 1 AGAATTATTT TTTAGTAGGG TTTACCTCAT TATTCGCCTG TGTTCCCACA ACCNTAGTTA 61 TGGAGTTTAG TTACACATAG TCATAATCAC AATATTCAAA TATGTAATAT AAGAATTCAT 121 GCACTTACTT CAATAAGAAA GAAAATAATC AAGAAGTTCA CTTGATTAAT CAACAAAATC 181 ACCAAAAATT AATTACTAAA ATTAATTGAA GACTAAAGAT TCTCCAAGAG TGTAATAAAA 241 ATTACCAAGT CTAATCCACA AAAGAAGCTA AAATAACCAA AGTCTAACTA TAAGAGAGTC 301 TAATCACCAA AGAGTCTAAA ACTAAAAACA AGGTTTTTCA AATTATTTAT AAAAAACAAA 361 AACCTAATTA GAGAAGGACC CTCTTGGCTG GAAATCTGTC AAAATGCGGC TAGGTCGACG 421 GACCTCGCGA CGGGTCGTCA TGGTCACGAT GGGCCATAAT GGACTCCGAC ATCCCATACC 481 TATGCAAAGT CTTCTGTTGG TCTCTTTATT ATCCACGACG GCAGGTATGA CGGATCATCA 541 CAGGCACAAC GGTCCGTCGA GGGTCTTCAT TCCATAACAC TTGAATTCTT GGAATTTGGG 601 TATTGGGACT ACTTCTTTGA TCTTCATGAC GAACTAGCAG GACAGACCAC CATGGCTACG 661 ACGGTCCGTC ACACTCTCCA TAACCCCACA CTTGGTCAGA CTTCCCCATC TTCCTTCAGC 721 AGCTTCACTA CGATGCCACT TACGGACCGT CACAAGCT Predicted gene structure (within gDNA segment 80060 to 82831): Exon 1 81153 81807 ( 655 n); cDNA 1 648 ( 648 n); score: 0.747 MATCH C08HBa0027D09.1+ SGN-E349968- 0.747 655 0.864 C PGS_C08HBa0027D09.1+_SGN-E349968- (81153 81807) Alignment (genomic DNA sequence = upper lines): AGAGTTGTTA TTTTAGTTAG GGTTTATCTC ATTATTTGCC TATGGTTCGC ACAACCCTAG 81212 ||| || || ||||||| || |||||| ||| |||||| ||| | | |||| | |||||| ||| AGAATTATT- TTTTAGT-AG GGTTTACCTC ATTATTCGCC TGT-GTTCCC ACAACCNTAG 57 TTATGGAGTT TAGTTACTCA TAGACATAAA CACAATATTC AAATATAGTA GATAAGAATT 81272 |||||||||| ||||||| || ||| ||||| |||||||||| |||||| | ||||||||| TTATGGAGTT TAGTTACACA TAGTCATAAT CACAATATTC AAATATGTAA TATAAGAATT 117 CATGTAGTTT CTTCAATGAG AAAGAGTAAT ATCCAAAAGT TTGCTTGATT AATCACCAAT 81332 |||| | || ||||||| || ||||| | ||| | |||| | ||||||| ||||| ||| CATGCACTTA CTTCAATAAG AAAGAAAATA ATCAAGAAGT TCACTTGATT AATCAACAA- 176 ATTCACTTGC AA-GAATCTC AAAGTAATCA ATAATCTCAC CAAA-AGTCT -AATGATTAT 81389 | |||| || ||| | || ||| | || || ||| | ||| | || | | AATCACCAAA AATTAATTAC TAA--AATTA AT-TGAAGAC TAAAGATTCT CCAAGAGTGT 233 CAAGAATCTC ACAATACAAT ATTTACCAAT AAGGAATTTT ACAATTTAAG AGTCTAAC-C 81448 | || | || | | | | | ||| || ||| | | | | |||||||| AATAAAAATT ACCA-AGTCT A-AT-CCACA AAAGAAGCTA AAATAACCAA AGTCTAACTA 290 TAATAGAGTC CAACCTATCT ACCGTCTAAC CTCAAAAATG ATGTTTTTTG AACTATTTAT 81508 ||| |||||| || | | |||||| ||||| | |||||| || ||||||| TAAGAGAGTC TAATCACCAA AGAGTCTAAA ACTAAAAACA AGGTTTTTCA AATTATTTAT 350 AAAAAATAAA AACCTAATTA AACAACGACT TTGTTTGCTG GAAATCTGCC AAAACGCGGC 81568 |||||| ||| |||||||||| | || ||| | || |||| |||||||| | |||| ||||| AAAAAACAAA AACCTAATTA GAGAAGGACC CTCTTGGCTG GAAATCTGTC AAAATGCGGC 410 TAGGTCGGCG GACATCGCGA CGGATCGTCA TGGTCACGAC GAACCGTCAT GGACTCCATC 81628 ||||||| || ||| |||||| ||| |||||| ||||||||| | || | || ||||||| | TAGGTCGACG GACCTCGCGA CGGGTCGTCA TGGTCACGAT GGGCCATAAT GGACTCCGAC 470 GTCCCATACT TGTGCAATTT CTTCTGCTGC TGTTCTTCAT TACCCTCGAC GACAAGTATG 81688 |||||||| | ||||| | |||||| || | |||| || || || |||| | || ||||| ATCCCATACC TATGCAAAGT CTTCTGTTGG T-CTCTTTAT TATCCACGAC GGCAGGTATG 529 ATGGGCCATC ATAGGCACAA CGGTCCATCG AGGGTCTTCA TTTCAAAACA CTTCAACTCT 81748 | || |||| | |||||||| |||||| ||| |||||||||| || || |||| ||| || ||| ACGGATCATC ACAGGCACAA CGGTCCGTCG AGGGTCTTCA TTCCATAACA CTTGAATTCT 589 TGGAATCTGG GTACTGGGAT TACTTCTCTG ATCATCATGA TGAACCTACA GGACGGACC 81807 |||||| ||| ||| ||||| ||||||| || ||| |||||| |||| || |||| |||| TGGAATTTGG GTATTGGGAC TACTTCTTTG ATCTTCATGA CGAACTAGCA GGACAGACC 648 hqPGS_C08HBa0027D09.1+_SGN-E349968- (81153 81807) ******************************************************************************** EST sequence 140 +strand 746 n (File: SGN-E546025+) 1 TTTTTTTTTT TTAATCAATA ATCTCACGAA AAGTCTAATG ATTATCAAGA ATTTTCCAAT 61 ACAATGTTCA CCAATACGAA GTTTTAACAA TCTAAGAGTC TAACTATCAG GTGTCTAACC 121 TCAAAAATGA GGTTTTTCGA ACTATTTATA TAAAAATAAA AACCTAATTA CACAAGAATT 181 CTAATTGGTG GAAATCTGCC AAAACGCGGC TGGGTCGACG GACCATGCGA CGGACCGTCG 241 TGGTCATGAC GGACCGTCAT GGACTCCGTC GTCCCATACT TGTGCACTTT CTTCTGCTGC 301 TCTCTTCATT CCCCTCGACG GCAAGTATGA CGGACTGTCA TAGGCACAAC GGTCTGTCAA 361 GGGTCTTCGT TTCAAAATAC TTCAACTCTC GGAATCTAGG TACTGGATTA CTTCTCTGAA 421 CTCCACGACG AACCTGCAGA ACAGACCGTC ATAGCCATGA CGGACCGTCA CAAGCTTCGT 481 AATCCCACAC TTGGTCAGAC TTCCCCATCT TCCTTCAGCA ACTTCTCTAC ACTGCCACCT 541 ACGGACCGTC ACAAGCACGA CGGACCGTCA TCAGCTCCAT AGGTGGTCTC TTCTGCATTT 601 CTTCTCTCAA AATCTCCGCA TTTGGCTTTG GACAAATTTC ATGATCACTT CAGCTCGCGG 661 CTCAATCCAC ACGTCTGGAT CTTCGGNATT TTTCTTCTTT CTTATGTGTG TTGCCTTGAA 721 TGCCTCAGCT TGAGTTACTG GTCTTC Predicted gene structure (within gDNA segment 80646 to 87529): Exon 1 81356 81983 ( 628 n); cDNA 12 642 ( 631 n); score: 0.788 Intron 1 81984 84415 (2432 n); Pd: 0.000 (s: 0.90), Pa: 0.793 (s: 0) Exon 2 84416 84428 ( 13 n); cDNA 643 654 ( 12 n); score: 0.692 PPA cDNA 11 1 MATCH C08HBa0027D09.1+ SGN-E546025+ 0.788 641 0.859 C PGS_C08HBa0027D09.1+_SGN-E546025+ (81356 81983,84416 84428) Alignment (genomic DNA sequence = upper lines): TAATCAATAA TCTCACCAAA AGTCTAATGA TTATCAAGAA TCTCACAATA CAATATTTAC 81415 |||||||||| |||||| ||| |||||||||| |||||||||| | | ||||| |||| || || TAATCAATAA TCTCACGAAA AGTCTAATGA TTATCAAGAA TTTTCCAATA CAATGTTCAC 71 CAATAAGGAA TTTTACAATT TAAGAGTCTA ACCTAATAGA GTCCAACCTA TCTACCGTCT 81475 |||| | ||| | || | | | | | | || | ||| ||| || ||| || |||| CAAT-ACGAA --GT----TT T-A-A--C-A ATCT-A-AGA GTCTAA-CTA TCAGGTGTCT 116 AACCTCAAAA ATGATGTTTT TTGAACTATT TATA-AAAAA TAAAAACCTA ATTAAACAAC 81534 |||||||||| |||| ||||| | |||||||| |||| ||||| |||||||||| |||| |||| AACCTCAAAA ATGAGGTTTT TCGAACTATT TATATAAAAA TAAAAACCTA ATTACACAAG 176 GACTTTGTTT GCTGGAAATC TGCCAAAACG CGGCTAGGTC GGCGGACATC GCGACGGATC 81594 | | | || | |||||||| |||||||||| ||||| |||| | ||||| |||||||| | AATTCTAATT GGTGGAAATC TGCCAAAACG CGGCTGGGTC GACGGACCAT GCGACGGACC 236 GTCATGGTCA CGACGAACCG TCATGGACTC CATCGTCCCA TACTTGTGCA ATTTCTTCTG 81654 ||| |||||| |||| |||| |||||||||| | |||||||| |||||||||| ||||||||| GTCGTGGTCA TGACGGACCG TCATGGACTC CGTCGTCCCA TACTTGTGCA CTTTCTTCTG 296 CTGCTGTTCT TCATTACCCT CGACGACAAG TATGATGGGC CATCATAGGC ACAACGGTCC 81714 ||||| ||| ||||| |||| ||||| |||| ||||| || | |||||||| ||||||||| CTGCT-CTCT TCATTCCCCT CGACGGCAAG TATGACGGAC TGTCATAGGC ACAACGGTCT 355 ATCGAGGGTC TTCATTTCAA AACACTTCAA CTCTTGGAAT CTGGGTACTG GGATTACTTC 81774 || |||||| ||| |||||| || ||||||| |||| ||||| || |||||| |||||||||| GTCAAGGGTC TTCGTTTCAA AATACTTCAA CTCTCGGAAT CTAGGTACT- GGATTACTTC 414 TCTG-A-T-C A--TC--A-- T---G-A-TG AAC--C-TA- -CAGGACGGA CCGTCACAAG 81815 |||| | | | | | | | | | | | | | || || |||||| |||||||||| TCTGAACTCC ACGACGAACC TGCAGAACAG ACCGTCATAG CCATGACGGA CCGTCACAAG 474 ATACGTAACC CCACACTTGG TCAGACTTCC CCATCTTCCT TCAGCAACTT CACTACGCTG 81875 | ||||| | |||||||||| |||||||||| |||||||||| |||||||||| | |||| ||| CTTCGTAATC CCACACTTGG TCAGACTTCC CCATCTTCCT TCAGCAACTT CTCTACACTG 534 CCACCTACGG ACCATCACAA GCACGACGGA CCGTCATAAG CTCCGTAGGT GGTCTCTTCT 81935 |||||||||| ||| |||||| |||||||||| ||||||| || |||| ||||| |||||||||| CCACCTACGG ACCGTCACAA GCACGACGGA CCGTCATCAG CTCCATAGGT GGTCTCTTCT 594 GCATTTCTTC GCTCAAAATC TCCGCATTCA GCTTTGGACA GATTTCCTGC AAAACAAAGA 81995 |||||||||| ||||||||| |||||||| |||||||||| ||||| | GCATTTCTTC TCTCAAAATC TCCGCATTTG GCTTTGGACA AATTTCAT.. .......... 642 GAAACTTATA TAAAAATTAG CACAAAAAAG GCTTTTGGAC ACACTAAACT TAAGAAAAAA 82055 .......... .......... .......... .......... .......... .......... 642 ATATTAATTA TACCATGAAA CCACGGTATA TCAGTGTCTA GAAACATGTA AATGGGCTTA 82115 .......... .......... .......... .......... .......... .......... 642 ACTACCCATG CTCCCTACTT TTTGTCACAC CCCAAGCTTT CCCTAGATGT AGCCCACACC 82175 .......... .......... .......... .......... .......... .......... 642 CAATGACCAT TATTGGCCTT GAGCGAACCC TTGACCTGAC TTACTTAACT TAGCGGAATA 82235 .......... .......... .......... .......... .......... .......... 642 CTCAACTCAA CTAAATAAAG AAATAAAATA TGGTTAAAAG TAATACTTAG TATGATAGTC 82295 .......... .......... .......... .......... .......... .......... 642 TATCCAAAAT GGCACTTAAG TCTCAACACT TGAAGATTTG AAATTACATA GTAAATAAGA 82355 .......... .......... .......... .......... .......... .......... 642 CTCAAAAACT GAACTACTAA ATGTCTATGA AGCCTCTAAA GTGACTGAGA TGAATGTTGA 82415 .......... .......... .......... .......... .......... .......... 642 GAAAAAACCC ACAACATTCA ATTGAACTAA CTAGAGATCA ATAAAAAGAT CATCCGGGAT 82475 .......... .......... .......... .......... .......... .......... 642 GCAAGGAGGC TCATCACTGA CTTTAGACCC CAAATTGGAT CAACTAAGTG TTGCATGCTG 82535 .......... .......... .......... .......... .......... .......... 642 ATCCTGGTTA CCTGCGTCTT CATCATAAGA CGATGCAGAA CAACTAGCAT CAGTACATTT 82595 .......... .......... .......... .......... .......... .......... 642 AATGTACGAG TATGTGAGTT GGAATGCTAA ACACAACTAT AAGGCTTGAA AGGAGTAAGA 82655 .......... .......... .......... .......... .......... .......... 642 ATGAATTTAC CTTGGCTCTG TTCAACTCAA GAAGTCATAA CTCAATATAA AGCAGTAAAG 82715 .......... .......... .......... .......... .......... .......... 642 ATGTATGCAA TATAAGGAGA TCTCTTGAAA ATCATATTTT CATTTTCGGT TCTCAATACT 82775 .......... .......... .......... .......... .......... .......... 642 AAACCCAAAT ATTTAGCTCA TATGTTTTTA AAACAACATC ATTGGTTTGA TTTAATTTCT 82835 .......... .......... .......... .......... .......... .......... 642 CAAACATATA TTTAAAAGAT CTCTTGAAAA TCATATTTTC ATTTTTGTTT TACTAAAACT 82895 .......... .......... .......... .......... .......... .......... 642 AACCATAGTC TATGTGGAAG TCTGTATTCA TCTCTTTCTC AAATGTTTGA AAACATTTTG 82955 .......... .......... .......... .......... .......... .......... 642 TTTAAACTCT TAAGGACTAC TTAATTCTCG TATAACACTT GAGAAATGAA CTCACCTTGT 83015 .......... .......... .......... .......... .......... .......... 642 TACGCTTTGC TTAACTTGAA ACTTAATTCT TAAGGAATAC TTAGTTCCCT TATAGCTTTT 83075 .......... .......... .......... .......... .......... .......... 642 GAGAATTTAA TTCAACTCTT TACTCTTTGC TCAACTCATT TCTTGAGACT TAAAAAAAAG 83135 .......... .......... .......... .......... .......... .......... 642 TTATAATGTT TGTTAAGACT CTTGAATGCT TTAGGGACTT ACTTTGACTT ACTTCTTAAC 83195 .......... .......... .......... .......... .......... .......... 642 TTTTAAACTT GACTCTTAAC TTCTTTGATT TTGATCTTAA CTTTTCTTGA ATTGGATTAT 83255 .......... .......... .......... .......... .......... .......... 642 GGATTCAAGG ATCATGATCT CATATTTAGG GACAATTTCA TGATGTTTAG ATATACTTTA 83315 .......... .......... .......... .......... .......... .......... 642 GAGTGTTTGA ATCAGCTAGG AATAATAAGT ACATCCCTTA GGAACTAGCA CGAAAAGATG 83375 .......... .......... .......... .......... .......... .......... 642 GGGGAGAAAT GGGGACTCTA GGTGATCCTG GTGCTCTCAG AGGCGCGGGG CGCTAGAGCA 83435 .......... .......... .......... .......... .......... .......... 642 AGACTGACAG AAATCTACTT AGCTCATTTA CCACTACATT AGCTTTTTCT GGGTGATATA 83495 .......... .......... .......... .......... .......... .......... 642 AAATAGTAAT ATTGTAGTCT TTCAATAACT CCATCCACTT TTTTTCCCTC TAATTCAAAT 83555 .......... .......... .......... .......... .......... .......... 642 CCTTCTAAAT GAACACATAT TGTAACATGC AATGATTTTT ATACACTTTT AACTTGACCC 83615 .......... .......... .......... .......... .......... .......... 642 CATAGAGATA ATGCCTCAAT TGCTTTAGTG CAAACACAAC TACAACCAAC TTCAAATCAT 83675 .......... .......... .......... .......... .......... .......... 642 GGTTCAGATA GTTACATTCA TGGACTTTCA ATTGTATTGA AACATAACAA TTAAATTCAT 83735 .......... .......... .......... .......... .......... .......... 642 CTCCTTCATT AGCACTACAC TCAAATTAGA ATCAGATGCA TCACTAAAAA TAGTGAAACT 83795 .......... .......... .......... .......... .......... .......... 642 CTTACCTTCC ACCGGCAGGG AAAGAGTTGG TGGAATACTC AAAAAGGTTT TGTGTTTCAG 83855 .......... .......... .......... .......... .......... .......... 642 GATGCTTTCT TCATACTCAT CCGACCATAC AAATGGAACA TTTTGCTTGG TCAAATTGGT 83915 .......... .......... .......... .......... .......... .......... 642 TAGCTTGGAA GCATTAGAAT AGAATCCCTG GACAAATCGA TGGTAGTATC TAGCTAAACA 83975 .......... .......... .......... .......... .......... .......... 642 ACAAAGCTCC TTACCTCAGA AACATTGGTA GGGCTTATCC AACTCTTCAC TACTTCAATT 84035 .......... .......... .......... .......... .......... .......... 642 TAATGGGGTC CACCCTCACT CCATCCGTAG AAACCACGTT CCCTAAGAAG GACATTGAAT 84095 .......... .......... .......... .......... .......... .......... 642 AAATCCAAAA CTCACACTTG GAGAATTTTA CATAAAGCCT TTTCTCCCAT AACAACCTAA 84155 .......... .......... .......... .......... .......... .......... 642 TACAATTCTC AAATGCTCAT CATGTTCCTT CGTGCTCTTT GAGTATATAA GTATATAATC 84215 .......... .......... .......... .......... .......... .......... 642 AATTATTACA ATAACAAATA GGTCTATATA TAAATTTAAA AATTTATTCT TCATGCTCAT 84275 .......... .......... .......... .......... .......... .......... 642 GAAGGATGCA AGGGCATTTA TAGTCCCAAA AGACATTTCT AAGAATATAT AATTCCCATA 84335 .......... .......... .......... .......... .......... .......... 642 CCTGGTTCGA AAATAAGTCT TTGGCATGTC TATTGCCCAC ATTTTCAATT GATGATAACC 84395 .......... .......... .......... .......... .......... .......... 642 GAACCTCAAA TCTATTTTAG AGATGACATA AGC 84428 ||| || | ||| .......... .......... -GATCACTTC AGC 654 hqPGS_C08HBa0027D09.1+_SGN-E546025+ (81356 81983) ******************************************************************************** EST sequence 293 -strand 582 n (File: SGN-E322644-) 1 AACAAGGACT CTATTTGCTG GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA 61 CGGATCGTCA TGGTCACGAT GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT 121 CTTTTGCTTC TCTCTTCATT ACCCTCGACG GCAGGTATGA CGGACCGTCA TAGGCACAAC 181 GGTCTATCGA GGGTCTTCGT TTCAACACAC TTGAACTCTT GGAATATGGG TACTGGGACT 241 ACTTCTCTGA ACTTCATGAC GAACCTGCAG GACGGACCGT CATGAACTCC GTAGCCCCGC 301 ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG 361 TCACAAGCAC GACGGACCGT CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC 421 AAAATCTCCG CATTCATCTT TGGACAGATT TCCTTAAAAA GTAAATCGCT TACTACTGAA 481 TGGAGATGCT TGGCGTCGAA AACATTGAGA ACATGACCAC CAGTATATCT TTTTCGTGAG 541 ATAAACCTTG CACCATACGT CCATACCAGA TAGCCAAAGC AT Predicted gene structure (within gDNA segment 80802 to 83863): Exon 1 81529 81989 ( 461 n); cDNA 1 460 ( 460 n); score: 0.887 MATCH C08HBa0027D09.1+ SGN-E322644- 0.887 461 0.792 C PGS_C08HBa0027D09.1+_SGN-E322644- (81529 81989) Alignment (genomic DNA sequence = upper lines): AACAACGACT TTGTTTGCTG GAAATCTGCC AAAACGCGGC TAGGTCGGCG GACATCGCGA 81588 ||||| |||| | ||||||| |||||||||| |||||||||| | ||||| | || || ||| AACAAGGACT CTATTTGCTG GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA 60 CGGATCGTCA TGGTCACGAC GAACCGTCAT GGACTCCATC GTCCCATACT TGTGCAATTT 81648 |||||||||| ||||||||| | |||||||| |||||| || |||||||||| | |||||||| CGGATCGTCA TGGTCACGAT GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT 120 CTTCTGCTGC TGTTCTTCAT TACCCTCGAC GACAAGTATG ATGGGCCATC ATAGGCACAA 81708 ||| |||| | | ||||||| |||||||||| | || ||||| | || || || |||||||||| CTTTTGCTTC T-CTCTTCAT TACCCTCGAC GGCAGGTATG ACGGACCGTC ATAGGCACAA 179 CGGTCCATCG AGGGTCTTCA TTTCAAAACA CTTCAACTCT TGGAATCTGG GTACTGGGAT 81768 ||||| |||| ||||||||| |||||| ||| ||| |||||| |||||| ||| ||||||||| CGGTCTATCG AGGGTCTTCG TTTCAACACA CTTGAACTCT TGGAATATGG GTACTGGGAC 239 TACTTCTCTG ATCATCATGA TGAACCTACA GGACGGACCG TCACAAGATA CGTAACCCCA 81828 |||||||||| | | |||||| |||||| || |||||||||| ||| | | |||| |||| TACTTCTCTG AACTTCATGA CGAACCTGCA GGACGGACCG TCATGAACTC CGTAGCCCCG 299 CACTTGGTCA GACTTCCCCA TCTTCCTTCA GCAACTTCAC TACGCTGCCA CCTACGGACC 81888 |||||||||| |||||||||| ||||| |||| ||| || ||| |||||||||| ||||| |||| CACTTGGTCA GACTTCCCCA TCTTCTTTCA GCAGCTGCAC TACGCTGCCA CCTACAGACC 359 ATCACAAGCA CGACGGACCG TCATAAGCTC CGTAGGTGGT CTCTTCTGCA TTTCTTCGCT 81948 ||||||||| |||||||||| |||||||||| |||||| || || ||||||| ||||||| || GTCACAAGCA CGACGGACCG TCATAAGCTC TGTAGGTCGT CTATTCTGCA TTTCTTCACT 419 CAAAATCTCC GCATTCAGCT TTGGACAGAT TTCCTGCAAA A 81989 |||||||||| ||||||| || |||||||||| ||||| ||| | CAAAATCTCC GCATTCATCT TTGGACAGAT TTCCTTAAAA A 460 hqPGS_C08HBa0027D09.1+_SGN-E322644- (81529 81989) ******************************************************************************** EST sequence 200 -strand 680 n (File: SGN-E346859-) 1 TGCCAAAACG CGGCTGGGTC GACGGACCAC GCGACAGAAC GTCGTGGTCA TGACGGACCG 61 TCATGGGCTC CGTCGCCCCA TACTTGGGTG CAATTCTTCT GCTGCTTTCT TCATTCCCCT 121 CGACGGCAAG TGTGACGGAC CGTCACAGGC ACGACGGTCC GTCGAGGGTC TTCGTTACAA 181 AATACTTCAA CTTTTGGAAT TTGGGTACTG GGATCACTTC TCTGATCTTC GCGACGAACC 241 TGCAGGACGG ACCGTCATAT CCATGACGGA CCGTCACAAG CTTCGTAATC CCACACTTGG 301 TCAGACTTCC CCATCTTCCT TCAGCAGCTT CTCTACGCTG CCACCTACGG ACCGTCACAA 361 GCACGACGGA CCGTCATAAG CTCCGTAGGT GGTCTCTTCT GCATTTATCG CTCAAAATCT 421 CCGCATTCAG CTTTAGACAG ATTTCCTGCA AAACAAAGAA AAACTTATAT CAAAATTAGC 481 ACAAAAAGGG CTTTCGGACA CACTAAACTT AAGGAAAAAG TATTAATTAT ACCGTGAAAC 541 CACGGTATAT CAATCCCCTA GTTCTACGTG TCAGTTCGTG ATACCCGATC CCCTAATTCT 601 ACGTGTCGGT TCATGACACC CGCTCCACTA ATCTTATTCT GTCAATCGAT CAAGCCTTCT 661 TTTATACCAA GGCATATCAA Predicted gene structure (within gDNA segment 78550 to 85519): Exon 1 81555 82088 ( 534 n); cDNA 1 552 ( 552 n); score: 0.812 MATCH C08HBa0027D09.1+ SGN-E346859- 0.812 534 0.785 C PGS_C08HBa0027D09.1+_SGN-E346859- (81555 82088) Alignment (genomic DNA sequence = upper lines): TGCCAAAACG CGGCTAGGTC GGCGGACATC GCGACGGATC GTCATGGTCA CGACGAACCG 81614 |||||||||| ||||| |||| | ||||| | ||||| || | ||| |||||| |||| |||| TGCCAAAACG CGGCTGGGTC GACGGACCAC GCGACAGAAC GTCGTGGTCA TGACGGACCG 60 TCATGGACTC CATCGTCCCA TACTT--GTG CAATTTCTTC TGCTGCTGTT CTTCATTACC 81672 |||||| ||| | ||| |||| ||||| ||| ||| |||||| ||||||| || ||||||| || TCATGGGCTC CGTCGCCCCA TACTTGGGTG CAA-TTCTTC TGCTGCT-TT CTTCATTCCC 118 CTCGACGACA AGTATGATGG GCCATCATAG GCACAACGGT CCATCGAGGG TCTTCATTTC 81732 ||||||| || ||| ||| || || ||| || |||| ||||| || ||||||| ||||| || | CTCGACGGCA AGTGTGACGG ACCGTCACAG GCACGACGGT CCGTCGAGGG TCTTCGTTAC 178 AAAACACTTC AACTCTTGGA ATCTGGGTAC TGGGATTACT TCTCTGATCA T-----C--A 81785 |||| ||||| |||| ||||| || ||||||| |||||| ||| ||||||||| | | | AAAATACTTC AACTTTTGGA ATTTGGGTAC TGGGATCACT TCTCTGATCT TCGCGACGAA 238 --TG-ATGA- --A-C--C-T A--CAGGACG GACCGTCACA AGATACGTAA CCCCACACTT 81833 || | || | | | | | || |||| |||||||||| || | ||||| ||||||||| CCTGCAGGAC GGACCGTCAT ATCCATGACG GACCGTCACA AGCTTCGTAA TCCCACACTT 298 GGTCAGACTT CCCCATCTTC CTTCAGCAAC TTCACTACGC TGCCACCTAC GGACCATCAC 81893 |||||||||| |||||||||| |||||||| | ||| |||||| |||||||||| ||||| |||| GGTCAGACTT CCCCATCTTC CTTCAGCAGC TTCTCTACGC TGCCACCTAC GGACCGTCAC 358 AAGCACGACG GACCGTCATA AGCTCCGTAG GTGGTCTCTT CTGCATTTCT TCGCTCAAAA 81953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| AAGCACGACG GACCGTCATA AGCTCCGTAG GTGGTCTCTT CTGCATTT-A TCGCTCAAAA 417 TCTCCGCATT CAGCTTTGGA CAGATTTCCT GCAAAACAAA GAGAAACTTA TATAAAAATT 82013 |||||||||| ||||||| || |||||||||| |||||||||| || ||||||| ||| |||||| TCTCCGCATT CAGCTTTAGA CAGATTTCCT GCAAAACAAA GAAAAACTTA TATCAAAATT 477 AGCACAAAAA AGGCTTTTGG ACACACTAAA CTTAAGAAAA AAATATTAAT TATACCATGA 82073 |||||||||| |||||| || |||||||||| |||||| ||| || ||||||| |||||| ||| AGCACAAAAA GGGCTTTCGG ACACACTAAA CTTAAGGAAA AAGTATTAAT TATACCGTGA 537 AACCACGGTA TATCA 82088 |||||||||| ||||| AACCACGGTA TATCA 552 hqPGS_C08HBa0027D09.1+_SGN-E346859- (81555 82088) ******************************************************************************** EST sequence 246 -strand 508 n (File: SGN-E243137-) 1 AAAACGCGGT TGGGTAACAA AAACTCACGA CGGATCGTCA TGGTCACGAT GGACCGTCAT 61 GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC TCTCTTCATT ACCCTCGACG 121 GCAGGTATGA CGGACCGTCA TAGGCACAAC GGTCTATCGA GGGTCTTCGT TTCAACACAC 181 TTGAACTCTT GGAATATGGG TACTGGGACT ACTTCTCTGA ACTTCATGAC GAACCTGCAG 241 GACGGACCGT CATGAACTCC GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG 301 CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT CATAAGCTCT 361 GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT TGGACAGATT 421 TCTACTGAAT GGAGATGCTT GGCGTCGAAA ACATTGAGAA CATGACCACC AGTATATCTT 481 TTTCGTGAGA TAAACCTTGC ACCATACG Predicted gene structure (within gDNA segment 80032 to 84008): Exon 1 81559 81981 ( 423 n); cDNA 1 422 ( 422 n); score: 0.877 MATCH C08HBa0027D09.1+ SGN-E243137- 0.877 423 0.833 C PGS_C08HBa0027D09.1+_SGN-E243137- (81559 81981) Alignment (genomic DNA sequence = upper lines): AAAACGCGGC TAGGTCGGCG GACATCGCGA CGGATCGTCA TGGTCACGAC GAACCGTCAT 81618 ||||||||| | ||| | || ||| |||||||||| ||||||||| | |||||||| AAAACGCGGT TGGGTAACAA AAACTCACGA CGGATCGTCA TGGTCACGAT GGACCGTCAT 60 GGACTCCATC GTCCCATACT TGTGCAATTT CTTCTGCTGC TGTTCTTCAT TACCCTCGAC 81678 |||||| || |||||||||| | |||||||| ||| |||| | | ||||||| |||||||||| GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC T-CTCTTCAT TACCCTCGAC 119 GACAAGTATG ATGGGCCATC ATAGGCACAA CGGTCCATCG AGGGTCTTCA TTTCAAAACA 81738 | || ||||| | || || || |||||||||| ||||| |||| ||||||||| |||||| ||| GGCAGGTATG ACGGACCGTC ATAGGCACAA CGGTCTATCG AGGGTCTTCG TTTCAACACA 179 CTTCAACTCT TGGAATCTGG GTACTGGGAT TACTTCTCTG ATCATCATGA TGAACCTACA 81798 ||| |||||| |||||| ||| ||||||||| |||||||||| | | |||||| |||||| || CTTGAACTCT TGGAATATGG GTACTGGGAC TACTTCTCTG AACTTCATGA CGAACCTGCA 239 GGACGGACCG TCACAAGATA CGTAACCCCA CACTTGGTCA GACTTCCCCA TCTTCCTTCA 81858 |||||||||| ||| | | |||| |||| |||||||||| |||||||||| ||||| |||| GGACGGACCG TCATGAACTC CGTAGCCCCG CACTTGGTCA GACTTCCCCA TCTTCTTTCA 299 GCAACTTCAC TACGCTGCCA CCTACGGACC ATCACAAGCA CGACGGACCG TCATAAGCTC 81918 ||| || ||| |||||||||| ||||| |||| ||||||||| |||||||||| |||||||||| GCAGCTGCAC TACGCTGCCA CCTACAGACC GTCACAAGCA CGACGGACCG TCATAAGCTC 359 CGTAGGTGGT CTCTTCTGCA TTTCTTCGCT CAAAATCTCC GCATTCAGCT TTGGACAGAT 81978 |||||| || || ||||||| ||||||| || |||||||||| ||||||| || |||||||||| TGTAGGTCGT CTATTCTGCA TTTCTTCACT CAAAATCTCC GCATTCATCT TTGGACAGAT 419 TTC 81981 ||| TTC 422 hqPGS_C08HBa0027D09.1+_SGN-E243137- (81559 81981) ******************************************************************************** EST sequence 59 +strand 522 n (File: SGN-E243969+) 1 GGAAATCTGC CAAAACGCGG CTTGGTCGAC GGACCACGCG ACGGACCGTC GTGGACTCTG 61 TCGTCCCATA CTTGGTGCAA TTTCTTCTGC TGCTTTCTTC ATTCCCCTCG ACGGCAAGTG 121 TAACGGACCG TCATAGGTAC AACGGTCTGT CGAGGGTCTT CGTTTCAAAA TACTTCAACT 181 CTTGGAATCT GGGTACTGGG ATCACTTCTC TGATCTTCAC GACGAACCTG CAGGACGGAC 241 CGTCATAGCC ATGACGGACC GTCACAAGCT TCGTAATCCC ACACTTGGTC AGACTTCCCC 301 ATCTTCCTTC AGCAGCTTCT CTACGCTACC ACCTACGGAC CGTCACAAGC ACGACAGACC 361 TTCAAAAGCT CCGTAGGTGG TCTCTTCTGC ATTTTTTTGC TCAAAATCTC CGCTTTCAGC 421 TTTTGACAGA TTTCCTGCAA AACAAAGAGA AACTTATATC AAAATTAGCA CAAAAAAGGC 481 TTTCGGACAC TTTAAACTTA AGGCAAAAGT ATTAATTATA CC Predicted gene structure (within gDNA segment 77132 to 83030): Exon 1 81573 82069 ( 497 n); cDNA 6 522 ( 517 n); score: 0.777 MATCH C08HBa0027D09.1+ SGN-E243969+ 0.777 497 0.952 C PGS_C08HBa0027D09.1+_SGN-E243969+ (81573 82069) Alignment (genomic DNA sequence = upper lines): TCGGCGGACA TCGCGAC-GG ATCGTC-ATG GTCACGACGA ACCGTCATGG ACTCCATCGT 81630 || || | | |||| | | ||| | | ||||| |||||| ||| |||| |||| TCTGC-CAAA ACGCGGCTTG GTCGACGGAC CACGCGACGG ACCGTCGTGG ACTCTGTCGT 64 CCCATACTT- GTGCAATTTC TTCTGCTGCT GTTCTTCATT ACCCTCGACG ACAAGTATGA 81689 ||||||||| |||||||||| |||||||||| ||||||||| ||||||||| ||||| | | CCCATACTTG GTGCAATTTC TTCTGCTGCT -TTCTTCATT CCCCTCGACG GCAAGTGTAA 123 TGGGCCATCA TAGGCACAAC GGTCCATCGA GGGTCTTCAT TTCAAAACAC TTCAACTCTT 81749 || || ||| |||| ||||| |||| |||| |||||||| | ||||||| || |||||||||| CGGACCGTCA TAGGTACAAC GGTCTGTCGA GGGTCTTCGT TTCAAAATAC TTCAACTCTT 183 GGAATCTGGG TACTGGGATT ACTTCTCTGA TCATCATGAT GAACCTACAG GACGGACCGT 81809 |||||||||| ||||||||| |||||||||| || ||| || |||||| ||| |||||||||| GGAATCTGGG TACTGGGATC ACTTCTCTGA TCTTCACGAC GAACCTGCAG GACGGACCGT 243 C--A--CA-- A--GA---T- AC--G----- TAACCCCACA CTTGGTCAGA CTTCCCCATC 81850 | | || | || | || | ||| |||||| |||||||||| |||||||||| CATAGCCATG ACGGACCGTC ACAAGCTTCG TAATCCCACA CTTGGTCAGA CTTCCCCATC 303 TTCCTTCAGC AACTTCACTA CGCTGCCACC TACGGACCAT CACAAGCACG ACGGACCGTC 81910 |||||||||| | |||| ||| |||| ||||| |||||||| | |||||||||| || |||| || TTCCTTCAGC AGCTTCTCTA CGCTACCACC TACGGACCGT CACAAGCACG ACAGACCTTC 363 ATAAGCTCCG TAGGTGGTCT CTTCTGCATT TCTTCGCTCA AAATCTCCGC ATTCAGCTTT 81970 | |||||||| |||||||||| |||||||||| | || ||||| |||||||||| ||||||||| AAAAGCTCCG TAGGTGGTCT CTTCTGCATT TTTTTGCTCA AAATCTCCGC TTTCAGCTTT 423 GGACAGATTT CCTGCAAAAC AAAGAGAAAC TTATATAAAA ATTAGCACAA AAAAGGCTTT 82030 ||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TGACAGATTT CCTGCAAAAC AAAGAGAAAC TTATATCAAA ATTAGCACAA AAAAGGCTTT 483 TGGACACACT AAACTTAAGA AAAAAATATT AATTATACC 82069 |||||| | ||||||||| |||| |||| ||||||||| CGGACACTTT AAACTTAAGG CAAAAGTATT AATTATACC 522 hqPGS_C08HBa0027D09.1+_SGN-E243969+ (81573 82069) ******************************************************************************** EST sequence 35 +strand 800 n (File: SGN-E540293+) 1 GTCGCGAGGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 61 CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 121 GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 181 TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 241 GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 301 TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 361 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 421 GCAAAATAAA AAGAAACTAA TATAGAAATT AGCACAAAAA GGATTTTAGA CACACTAAAC 481 TTAAGGAAAA AGTATTAATA ATACCATGAA ACCACGGTAT ATCACTTGGC CACCACTTCC 541 TTAACCCCTC AAAACTAAGT CCCCACCACG AGCCTTTCCA CGGCCAATAA TAGCTTTCAC 601 GAGCCGTGAA ATAGCTTGTG TGGAGGGGGC TATTTTGGGC AGATTTCACC TAGCCACAGC 661 CTAGCCCACC ACGATCTGTG GTCCTCAGCA TTGTCCATTA CGGTGGTCGT GAGAAGGTGG 721 GAAATGTCTG GGGAAAATTT GGCTGCCCTA GCCCTCTTCC TTGGCTCTAG ACCTCTCACA 781 TAGACTTAGT TTAGGCTACT Predicted gene structure (within gDNA segment 78030 to 86939): Exon 1 81583 82088 ( 506 n); cDNA 2 524 ( 523 n); score: 0.825 Intron 1 82089 85435 (3347 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 85436 85464 ( 29 n); cDNA 525 552 ( 28 n); score: 0.690 MATCH C08HBa0027D09.1+ SGN-E540293+ 0.825 535 0.669 C PGS_C08HBa0027D09.1+_SGN-E540293+ (81583 82088,85436 85464) Alignment (genomic DNA sequence = upper lines): TCGCGACGGA TCGTCATGGT CACGACGAAC CGTCATGGAC TCCATCGTCC CATACTTGTG 81642 |||||| || ||||||||| ||||||| || |||||||||| ||| |||||| ||||||| || TCGCGA-GGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 60 CAATTTCTTC TGCTGCTGTT CTTCATTACC CTCGACGACA AGTATGATGG GCCATCATAG 81702 ||||||||| || |||| || |||||||||| ||| ||| || |||||| || || |||||| CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 120 GCACAACGGT CCATCGAGGG TCTTCATTTC AAAACACTTC AACTCTTGGA ATCTGGGTAC 81762 |||||||||| || ||||||| |||| || | ||||||||| |||||||||| || ||||||| GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 180 TGGGATTACT TCTCTG-A-- TCAT--C--A --TG-ATGA- --A-C--C-T --ACAGGACG 81803 |||||||||| |||||| | |||| | | || | || | | | | ||| || | TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 240 GACCGTCACA AGATACGTAA CCCCACACTT GGTCAGACTT CCCCATCTTC CTTCAGCAAC 81863 |||||||||| || | ||||| ||||| |||| |||||||||| |||||||||| |||||||| | GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 300 TTCACTACGC TGCCACCTAC GGACCATCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 81923 | |||||||| || ||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 360 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 81983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 420 GCAAAACAAA GAGAAACTTA TATAAAAATT AGCACAAAAA AGGCTTTTGG ACACACTAAA 82043 |||||| ||| ||||||| | |||| ||||| ||||| |||| ||| |||| | |||||||||| GCAAAATAAA AAGAAACTAA TATAGAAATT AGCAC-AAAA AGGATTTTAG ACACACTAAA 479 CTTAAGAAAA AAATATTAAT TATACCATGA AACCACGGTA TATCAGTGTC TAGAAACATG 82103 |||||| ||| || ||||||| ||||||||| |||||||||| ||||| CTTAAGGAAA AAGTATTAAT AATACCATGA AACCACGGTA TATCA..... .......... 524 TAAATGGGCT TAACTACCCA TGCTCCCTAC TTTTTGTCAC ACCCCAAGCT TTCCCTAGAT 82163 .......... .......... .......... .......... .......... .......... 524 GTAGCCCACA CCCAATGACC ATTATTGGCC TTGAGCGAAC CCTTGACCTG ACTTACTTAA 82223 .......... .......... .......... .......... .......... .......... 524 CTTAGCGGAA TACTCAACTC AACTAAATAA AGAAATAAAA TATGGTTAAA AGTAATACTT 82283 .......... .......... .......... .......... .......... .......... 524 AGTATGATAG TCTATCCAAA ATGGCACTTA AGTCTCAACA CTTGAAGATT TGAAATTACA 82343 .......... .......... .......... .......... .......... .......... 524 TAGTAAATAA GACTCAAAAA CTGAACTACT AAATGTCTAT GAAGCCTCTA AAGTGACTGA 82403 .......... .......... .......... .......... .......... .......... 524 GATGAATGTT GAGAAAAAAC CCACAACATT CAATTGAACT AACTAGAGAT CAATAAAAAG 82463 .......... .......... .......... .......... .......... .......... 524 ATCATCCGGG ATGCAAGGAG GCTCATCACT GACTTTAGAC CCCAAATTGG ATCAACTAAG 82523 .......... .......... .......... .......... .......... .......... 524 TGTTGCATGC TGATCCTGGT TACCTGCGTC TTCATCATAA GACGATGCAG AACAACTAGC 82583 .......... .......... .......... .......... .......... .......... 524 ATCAGTACAT TTAATGTACG AGTATGTGAG TTGGAATGCT AAACACAACT ATAAGGCTTG 82643 .......... .......... .......... .......... .......... .......... 524 AAAGGAGTAA GAATGAATTT ACCTTGGCTC TGTTCAACTC AAGAAGTCAT AACTCAATAT 82703 .......... .......... .......... .......... .......... .......... 524 AAAGCAGTAA AGATGTATGC AATATAAGGA GATCTCTTGA AAATCATATT TTCATTTTCG 82763 .......... .......... .......... .......... .......... .......... 524 GTTCTCAATA CTAAACCCAA ATATTTAGCT CATATGTTTT TAAAACAACA TCATTGGTTT 82823 .......... .......... .......... .......... .......... .......... 524 GATTTAATTT CTCAAACATA TATTTAAAAG ATCTCTTGAA AATCATATTT TCATTTTTGT 82883 .......... .......... .......... .......... .......... .......... 524 TTTACTAAAA CTAACCATAG TCTATGTGGA AGTCTGTATT CATCTCTTTC TCAAATGTTT 82943 .......... .......... .......... .......... .......... .......... 524 GAAAACATTT TGTTTAAACT CTTAAGGACT ACTTAATTCT CGTATAACAC TTGAGAAATG 83003 .......... .......... .......... .......... .......... .......... 524 AACTCACCTT GTTACGCTTT GCTTAACTTG AAACTTAATT CTTAAGGAAT ACTTAGTTCC 83063 .......... .......... .......... .......... .......... .......... 524 CTTATAGCTT TTGAGAATTT AATTCAACTC TTTACTCTTT GCTCAACTCA TTTCTTGAGA 83123 .......... .......... .......... .......... .......... .......... 524 CTTAAAAAAA AGTTATAATG TTTGTTAAGA CTCTTGAATG CTTTAGGGAC TTACTTTGAC 83183 .......... .......... .......... .......... .......... .......... 524 TTACTTCTTA ACTTTTAAAC TTGACTCTTA ACTTCTTTGA TTTTGATCTT AACTTTTCTT 83243 .......... .......... .......... .......... .......... .......... 524 GAATTGGATT ATGGATTCAA GGATCATGAT CTCATATTTA GGGACAATTT CATGATGTTT 83303 .......... .......... .......... .......... .......... .......... 524 AGATATACTT TAGAGTGTTT GAATCAGCTA GGAATAATAA GTACATCCCT TAGGAACTAG 83363 .......... .......... .......... .......... .......... .......... 524 CACGAAAAGA TGGGGGAGAA ATGGGGACTC TAGGTGATCC TGGTGCTCTC AGAGGCGCGG 83423 .......... .......... .......... .......... .......... .......... 524 GGCGCTAGAG CAAGACTGAC AGAAATCTAC TTAGCTCATT TACCACTACA TTAGCTTTTT 83483 .......... .......... .......... .......... .......... .......... 524 CTGGGTGATA TAAAATAGTA ATATTGTAGT CTTTCAATAA CTCCATCCAC TTTTTTTCCC 83543 .......... .......... .......... .......... .......... .......... 524 TCTAATTCAA ATCCTTCTAA ATGAACACAT ATTGTAACAT GCAATGATTT TTATACACTT 83603 .......... .......... .......... .......... .......... .......... 524 TTAACTTGAC CCCATAGAGA TAATGCCTCA ATTGCTTTAG TGCAAACACA ACTACAACCA 83663 .......... .......... .......... .......... .......... .......... 524 ACTTCAAATC ATGGTTCAGA TAGTTACATT CATGGACTTT CAATTGTATT GAAACATAAC 83723 .......... .......... .......... .......... .......... .......... 524 AATTAAATTC ATCTCCTTCA TTAGCACTAC ACTCAAATTA GAATCAGATG CATCACTAAA 83783 .......... .......... .......... .......... .......... .......... 524 AATAGTGAAA CTCTTACCTT CCACCGGCAG GGAAAGAGTT GGTGGAATAC TCAAAAAGGT 83843 .......... .......... .......... .......... .......... .......... 524 TTTGTGTTTC AGGATGCTTT CTTCATACTC ATCCGACCAT ACAAATGGAA CATTTTGCTT 83903 .......... .......... .......... .......... .......... .......... 524 GGTCAAATTG GTTAGCTTGG AAGCATTAGA ATAGAATCCC TGGACAAATC GATGGTAGTA 83963 .......... .......... .......... .......... .......... .......... 524 TCTAGCTAAA CAACAAAGCT CCTTACCTCA GAAACATTGG TAGGGCTTAT CCAACTCTTC 84023 .......... .......... .......... .......... .......... .......... 524 ACTACTTCAA TTTAATGGGG TCCACCCTCA CTCCATCCGT AGAAACCACG TTCCCTAAGA 84083 .......... .......... .......... .......... .......... .......... 524 AGGACATTGA ATAAATCCAA AACTCACACT TGGAGAATTT TACATAAAGC CTTTTCTCCC 84143 .......... .......... .......... .......... .......... .......... 524 ATAACAACCT AATACAATTC TCAAATGCTC ATCATGTTCC TTCGTGCTCT TTGAGTATAT 84203 .......... .......... .......... .......... .......... .......... 524 AAGTATATAA TCAATTATTA CAATAACAAA TAGGTCTATA TATAAATTTA AAAATTTATT 84263 .......... .......... .......... .......... .......... .......... 524 CTTCATGCTC ATGAAGGATG CAAGGGCATT TATAGTCCCA AAAGACATTT CTAAGAATAT 84323 .......... .......... .......... .......... .......... .......... 524 ATAATTCCCA TACCTGGTTC GAAAATAAGT CTTTGGCATG TCTATTGCCC ACATTTTCAA 84383 .......... .......... .......... .......... .......... .......... 524 TTGATGATAA CCGAACCTCA AATCTATTTT AGAGATGACA TAAGCACCAT GTAACTAATC 84443 .......... .......... .......... .......... .......... .......... 524 AAACAAGTCA TCAATGCGAG GAATGAGGTA CTTTTTATTA ATAGTTAACT TATTTAACTT 84503 .......... .......... .......... .......... .......... .......... 524 TCTGTAGTCA ATGCACATCC GAAAACCATT ATCGTTCTTC TTAAAAAATA AAACTGGAGC 84563 .......... .......... .......... .......... .......... .......... 524 ACCACAAGGA GATGCACTGG GTCTAATAAA ACCTTTACCT AACAACTCCT ACAACTGGGC 84623 .......... .......... .......... .......... .......... .......... 524 CTTTAACTCT CTTAACTCAA CTGGGGCCAT TCTATAAAGT GGAATACAAA TGGGGTGAGT 84683 .......... .......... .......... .......... .......... .......... 524 CCTCGACTTC AAGTCAATTC AAGAATCAAT ATCTCTTTCT AGTGGCATAC CACACATGTG 84743 .......... .......... .......... .......... .......... .......... 524 TGTAGAAAAA ACATCCACAA ACTCACAAAC TGTTGGAACA GACTCGATCA AAGGCTTTTT 84803 .......... .......... .......... .......... .......... .......... 524 AGAAGTATCA TCTCTGAGAT GTTCCGAGAA ATCTAAACAA GCCTTACTCA CCAACCTCTT 84863 .......... .......... .......... .......... .......... .......... 524 AGCACAAAGA AGAGAGATAA TATGAATTGG GGTGGAAATA TAGTCAAACT CTGACACTAG 84923 .......... .......... .......... .......... .......... .......... 524 TGGATCTATC CCAAGCTTGG ATATGGTCAC ACTCTTAGAA TTACAATCTA AGATAGCAGA 84983 .......... .......... .......... .......... .......... .......... 524 TTCGGAGAAA GACACGTTAT TCCAAAAATT ATATCAAAAT CAACCATCTC TAGAATAATG 85043 .......... .......... .......... .......... .......... .......... 524 ATATCTACAT AACTGTTTAT CTTAAAAAAA TATCATAAGG CAATACCTTC TCAACTATCA 85103 .......... .......... .......... .......... .......... .......... 524 CAGACTCACT TACAGACGTA GAGACACAAA TAAGCAAGTA ACAATGCAAA TCAAGACCAA 85163 .......... .......... .......... .......... .......... .......... 524 CAGCGAACAA AGAAGATATA TAAGAAAATG TGGATCGAGT ATCAAACAAT ACCGAAGCCA 85223 .......... .......... .......... .......... .......... .......... 524 TGTGATCACA AACTAGAAGA GTACATATGA TAACAACATT ATATGTCCCT ACCTCTGGGA 85283 .......... .......... .......... .......... .......... .......... 524 TCCAAGAGAA AACATAACTA TGGGCCCCAT CACCTATCAG TCCATTGCCC TGCCACACTG 85343 .......... .......... .......... .......... .......... .......... 524 CGCTCCAGTA GTTGCAACCT TCTTGCCACC CCGACTGAAC TTGTGCACAC CATTATCTTG 85403 .......... .......... .......... .......... .......... .......... 524 ATCAACACAT CCCCCAAAAT GATGGCCCTT TCCACGACCA CCTCTACCTA TGACTCCTGA 85463 | | ||| || || ||| | || ||| | .......... .......... .......... ..CTTGGCCA CCACTTCCT- TAACCCCTCA 551 A 85464 | A 552 hqPGS_C08HBa0027D09.1+_SGN-E540293+ (81583 82088) ******************************************************************************** EST sequence 45 +strand 534 n (File: SGN-E286708+) 1 TCGCGAGGTC CGTCATGGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTATGC 61 AATTTCTTTT GTTGCTCTTC TTCATTACCC TCAACGGCAA GTATGGCGGA CCGTCATAGG 121 CACAACGGTC CGTCGAGGGC CTTCGTTCCA AAACACTTTA ACTCTTGGAA TATGGGTACT 181 GGGATTACTT CTCTGAACTT CATGACGAAC CTGTAGGACG GACCGTCATA GACACGATGG 241 ACCGTCACAA GCTTCGTAAC CCCATACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT 301 GCACTACGCT GACACCTACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 361 TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 421 CAAAATAAAA AGAAACTAAT ATAGAAATTA GCACAAAAAG GATTTTAGAC ACACTAAACT 481 TAAGGAAAAA GTATTAATAA TACCATGAAA CCACGGTATA TCACTTGGCC ACCA Predicted gene structure (within gDNA segment 78040 to 83689): Exon 1 81583 82088 ( 506 n); cDNA 1 523 ( 523 n); score: 0.825 MATCH C08HBa0027D09.1+ SGN-E286708+ 0.825 506 0.948 C PGS_C08HBa0027D09.1+_SGN-E286708+ (81583 82088) Alignment (genomic DNA sequence = upper lines): TCGCGACGGA TCGTCATGGT CACGACGAAC CGTCATGGAC TCCATCGTCC CATACTTGTG 81642 |||||| || ||||||||| ||||||| || |||||||||| ||| |||||| ||||||| || TCGCGA-GGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 59 CAATTTCTTC TGCTGCTGTT CTTCATTACC CTCGACGACA AGTATGATGG GCCATCATAG 81702 ||||||||| || |||| || |||||||||| ||| ||| || |||||| || || |||||| CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 119 GCACAACGGT CCATCGAGGG TCTTCATTTC AAAACACTTC AACTCTTGGA ATCTGGGTAC 81762 |||||||||| || ||||||| |||| || | ||||||||| |||||||||| || ||||||| GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 179 TGGGATTACT TCTCTG-A-- TCAT--C--A --TG-ATGA- --A-C--C-T --ACAGGACG 81803 |||||||||| |||||| | |||| | | || | || | | | | ||| || | TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 239 GACCGTCACA AGATACGTAA CCCCACACTT GGTCAGACTT CCCCATCTTC CTTCAGCAAC 81863 |||||||||| || | ||||| ||||| |||| |||||||||| |||||||||| |||||||| | GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 299 TTCACTACGC TGCCACCTAC GGACCATCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 81923 | |||||||| || ||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 359 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 81983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 419 GCAAAACAAA GAGAAACTTA TATAAAAATT AGCACAAAAA AGGCTTTTGG ACACACTAAA 82043 |||||| ||| ||||||| | |||| ||||| ||||| |||| ||| |||| | |||||||||| GCAAAATAAA AAGAAACTAA TATAGAAATT AGCAC-AAAA AGGATTTTAG ACACACTAAA 478 CTTAAGAAAA AAATATTAAT TATACCATGA AACCACGGTA TATCA 82088 |||||| ||| || ||||||| ||||||||| |||||||||| ||||| CTTAAGGAAA AAGTATTAAT AATACCATGA AACCACGGTA TATCA 523 hqPGS_C08HBa0027D09.1+_SGN-E286708+ (81583 82088) ******************************************************************************** EST sequence 309 -strand 498 n (File: SGN-E258752-) 1 TCATGGTCAC GATGGACCGT CATGGACTCT GTCGTCCCAT ACTTATGCAA TTTCTTTTGC 61 TTCTCTCTTC ATTACCCTCG ACGGCAGGTA TGACGGACCG TCATAGGCAC AACGGTCTAT 121 CGAGGGTCTT CGTTTCAACA CACTTGAACT CTTGGAATAT GGGTACTGGG ACTACTTCTC 181 TGAACTTCAT GACGAACCTG CAGGACGGAC CGTCATGAAC TCCGTAGCCC CGCACTTGGT 241 CAGACTTCCC CATCTTCTTT CAGCAGCTGC ACTACGCTGC CACCTACAGA CCGTCACAAG 301 CACGACGGAC CGTCATAAGC TCTGTAGGTC GTCTATTCTG CATTTCTTCA CTCAAAATCT 361 CCGCATTCAT CTTTGGACAG ATTTCCTTAA AAAGTAAATC GCTTACTACT GAATGGAGAT 421 GCTTGGCGTC GAAAACATTG AGAACATGAC CACCAGTATA TCTTTTTCGT GAGATAAACC 481 TTGCACCATA CGTCCATA Predicted gene structure (within gDNA segment 80402 to 83693): Exon 1 81596 81989 ( 394 n); cDNA 1 393 ( 393 n); score: 0.891 MATCH C08HBa0027D09.1+ SGN-E258752- 0.891 394 0.791 C PGS_C08HBa0027D09.1+_SGN-E258752- (81596 81989) Alignment (genomic DNA sequence = upper lines): TCATGGTCAC GACGAACCGT CATGGACTCC ATCGTCCCAT ACTTGTGCAA TTTCTTCTGC 81655 |||||||||| || | ||||| ||||||||| ||||||||| |||| ||||| |||||| ||| TCATGGTCAC GATGGACCGT CATGGACTCT GTCGTCCCAT ACTTATGCAA TTTCTTTTGC 60 TGCTGTTCTT CATTACCCTC GACGACAAGT ATGATGGGCC ATCATAGGCA CAACGGTCCA 81715 | || |||| |||||||||| |||| || || |||| || || ||||||||| |||||||| | TTCT-CTCTT CATTACCCTC GACGGCAGGT ATGACGGACC GTCATAGGCA CAACGGTCTA 119 TCGAGGGTCT TCATTTCAAA ACACTTCAAC TCTTGGAATC TGGGTACTGG GATTACTTCT 81775 |||||||||| || |||||| |||||| ||| ||||||||| |||||||||| || ||||||| TCGAGGGTCT TCGTTTCAAC ACACTTGAAC TCTTGGAATA TGGGTACTGG GACTACTTCT 179 CTGATCATCA TGATGAACCT ACAGGACGGA CCGTCACAAG ATACGTAACC CCACACTTGG 81835 |||| | ||| ||| |||||| ||||||||| |||||| | | |||| || || ||||||| CTGAACTTCA TGACGAACCT GCAGGACGGA CCGTCATGAA CTCCGTAGCC CCGCACTTGG 239 TCAGACTTCC CCATCTTCCT TCAGCAACTT CACTACGCTG CCACCTACGG ACCATCACAA 81895 |||||||||| |||||||| | |||||| || |||||||||| |||||||| | ||| |||||| TCAGACTTCC CCATCTTCTT TCAGCAGCTG CACTACGCTG CCACCTACAG ACCGTCACAA 299 GCACGACGGA CCGTCATAAG CTCCGTAGGT GGTCTCTTCT GCATTTCTTC GCTCAAAATC 81955 |||||||||| |||||||||| ||| |||||| |||| |||| |||||||||| ||||||||| GCACGACGGA CCGTCATAAG CTCTGTAGGT CGTCTATTCT GCATTTCTTC ACTCAAAATC 359 TCCGCATTCA GCTTTGGACA GATTTCCTGC AAAA 81989 |||||||||| ||||||||| |||||||| |||| TCCGCATTCA TCTTTGGACA GATTTCCTTA AAAA 393 hqPGS_C08HBa0027D09.1+_SGN-E258752- (81596 81989) ******************************************************************************** EST sequence 179 -strand 502 n (File: SGN-E551207-) 1 CCGTCATGGA CTCCATCATC CCATACTTGT GCAATTTCTT CTTATGCTCT CTTCATTACC 61 CTCGACGGCA AATATGACGA ACCGTCATAG GCAAAACGGT CCGTCAAAGG GTCTTCTTTT 121 CAAAACTATT AAACTCTTGG AATATGGGTA CTAGGACTAC TTCTCAGAAC ATCATGACGA 181 AGATGCAGGA CAGACCGTCA TAAACACGAT GGAGCGTCAT GGACTCCGTA ACCCCACACT 241 TGGTCAAACA TCCCTATATT CCTTCAGCAG ATGCACTACG CTGCCACCTA CGGACCGTCA 301 CAAGCACAAC GGACCGTCAC AAGCTCCGTA GGTGGTCTCC TCTGCATTTC TTCGCTCAAA 361 ATATCCGCAC TCATCTTTGG ATAGATTTCC TGCAAATAAA GAGAAACTTA CATAAAAAAA 421 TAGCACAAAA AGGCTTTAGG ACACACTAAG CTTATGGAAA AAGTATTACT AATATCGTGA 481 AACCACGGTA TATCAACACC CT Predicted gene structure (within gDNA segment 81002 to 83954): Exon 1 81612 82088 ( 477 n); cDNA 1 495 ( 495 n); score: 0.770 MATCH C08HBa0027D09.1+ SGN-E551207- 0.770 477 0.950 C PGS_C08HBa0027D09.1+_SGN-E551207- (81612 82088) Alignment (genomic DNA sequence = upper lines): CCGTCATGGA CTCCATCGTC CCATACTTGT GCAATTTCTT CTGCTGCTGT TCTTCATTAC 81671 |||||||||| ||||||| || |||||||||| |||||||||| || |||| |||||||||| CCGTCATGGA CTCCATCATC CCATACTTGT GCAATTTCTT CTTATGCT-C TCTTCATTAC 59 CCTCGACGAC AAGTATGATG GGCCATCATA GGCACAACGG TCCATC-GAG GGTCTTCATT 81730 |||||||| | || ||||| | || ||||| |||| ||||| ||| || || ||||||| || CCTCGACGGC AAATATGACG AACCGTCATA GGCAAAACGG TCCGTCAAAG GGTCTTCTTT 119 TCAAAACACT TCAACTCTTG GAATCTGGGT ACTGGGATTA CTTCTCTGAT CATCATGATG 81790 ||||||| | | |||||||| |||| ||||| ||| ||| || |||||| || |||||||| | TCAAAACTAT TAAACTCTTG GAATATGGGT ACTAGGACTA CTTCTCAGAA CATCATGACG 179 AACCTACAGG ACGGACCGTC ----ACA--A --GA------ T--AC---GT AACCCCACAC 81831 || | |||| || ||||||| ||| | || | || || |||||||||| AAGATGCAGG ACAGACCGTC ATAAACACGA TGGAGCGTCA TGGACTCCGT AACCCCACAC 239 TTGGTCAGAC TTCCCCATCT TCCTTCAGCA ACTTCACTAC GCTGCCACCT ACGGACCATC 81891 ||||||| || |||| || | |||||||||| | |||||| |||||||||| ||||||| || TTGGTCAAAC ATCCCTATAT TCCTTCAGCA GATGCACTAC GCTGCCACCT ACGGACCGTC 299 ACAAGCACGA CGGACCGTCA TAAGCTCCGT AGGTGGTCTC TTCTGCATTT CTTCGCTCAA 81951 |||||||| | |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| ACAAGCACAA CGGACCGTCA CAAGCTCCGT AGGTGGTCTC CTCTGCATTT CTTCGCTCAA 359 AATCTCCGCA TTCAGCTTTG GACAGATTTC CTGCAAAACA AAGAGAAACT TATAT-AAAA 82010 ||| |||||| ||| ||||| || ||||||| |||| ||| | |||||||||| || || |||| AATATCCGCA CTCATCTTTG GATAGATTTC CTGC-AAATA AAGAGAAACT TACATAAAAA 418 ATTAGCACAA AAAAGGCTTT TGGACACACT AAACTTAAGA AAAAAATATT AATTATACCA 82070 | |||||| | |||||||||| ||||||||| || |||| | ||||| |||| | | ||| | AATAGCAC-A AAAAGGCTTT AGGACACACT AAGCTTATGG AAAAAGTATT ACTAATATCG 477 TGAAACCACG GTATATCA 82088 |||||||||| |||||||| TGAAACCACG GTATATCA 495 hqPGS_C08HBa0027D09.1+_SGN-E551207- (81612 82088) ******************************************************************************** EST sequence 220 -strand 464 n (File: SGN-E255290-) 1 TCCCATACTT ATGCAATTTC TTTTGCTTCT CTCTTCATTA CCCTCGACGG CAGGTATGAC 61 GGACCGTCAT AGGCACAACG GTCTATCGAG GGTCTTCGTT TCAACACACT TGAACTCTTG 121 GAATATGGGT ACTGGGACTA CTTCTCTGAA CTTCATGACG AACCTGCAGG ACGGACCGTC 181 ATGAACTCCG TAGCCCCGCA CTTGGTCAGA CTTCCCCATC TTCTTTCAGC AGCTGCACTA 241 CGCTGCCACC TACAGACCGT CACAAGCACG ACGGACCGTC ATAAGCTCTG TAGGTCGTCT 301 ATTCTGCATT TCTTCACTCA AAATCTCCGC ATTCATCTTT GGACAGATTT CCTTAAAAAG 361 TAAATCGCTT ACTACTGAAT GGAGATGCTT GGCGTCGAAA ACATTGAGAA CATGACCACC 421 AGTATATCTT TTTCGTGAGA TAAACCTTGC ACCATACGTC CATA Predicted gene structure (within gDNA segment 80742 to 83693): Exon 1 81630 81989 ( 360 n); cDNA 1 359 ( 359 n); score: 0.892 MATCH C08HBa0027D09.1+ SGN-E255290- 0.892 360 0.776 C PGS_C08HBa0027D09.1+_SGN-E255290- (81630 81989) Alignment (genomic DNA sequence = upper lines): TCCCATACTT GTGCAATTTC TTCTGCTGCT GTTCTTCATT ACCCTCGACG ACAAGTATGA 81689 |||||||||| ||||||||| || |||| || |||||||| |||||||||| || |||||| TCCCATACTT ATGCAATTTC TTTTGCTTCT -CTCTTCATT ACCCTCGACG GCAGGTATGA 59 TGGGCCATCA TAGGCACAAC GGTCCATCGA GGGTCTTCAT TTCAAAACAC TTCAACTCTT 81749 || || ||| |||||||||| |||| ||||| |||||||| | ||||| |||| || ||||||| CGGACCGTCA TAGGCACAAC GGTCTATCGA GGGTCTTCGT TTCAACACAC TTGAACTCTT 119 GGAATCTGGG TACTGGGATT ACTTCTCTGA TCATCATGAT GAACCTACAG GACGGACCGT 81809 ||||| |||| |||||||| | |||||||||| | |||||| |||||| ||| |||||||||| GGAATATGGG TACTGGGACT ACTTCTCTGA ACTTCATGAC GAACCTGCAG GACGGACCGT 179 CACAAGATAC GTAACCCCAC ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG CAACTTCACT 81869 || | | | ||| |||| | |||||||||| |||||||||| |||| ||||| || || |||| CATGAACTCC GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG CAGCTGCACT 239 ACGCTGCCAC CTACGGACCA TCACAAGCAC GACGGACCGT CATAAGCTCC GTAGGTGGTC 81929 |||||||||| |||| |||| |||||||||| |||||||||| ||||||||| |||||| ||| ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT CATAAGCTCT GTAGGTCGTC 299 TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTGCAAAA 81989 | |||||||| |||||| ||| |||||||||| |||||| ||| |||||||||| |||| |||| TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT TGGACAGATT TCCTTAAAAA 359 hqPGS_C08HBa0027D09.1+_SGN-E255290- (81630 81989) ******************************************************************************** EST sequence 298 -strand 402 n (File: SGN-E258181-) 1 ACGGACCGTC ATAGGCACAA CGGTCTATAG AGGGTTTTCG TTTCAACACA CTTGAACTCT 61 TGGAATATGG GTACTGGGAC TACTTCTCTG AACTTCATGA CGAACCTGCA GGACGGACCG 121 TCATGAACTC CGTAGCCCCG CACTTGGTCA GACTTCCCCA TCTTCTTTCA GCAGCTGCAC 181 TACGCTGCCA CCTACAGACC GTCACAAGCA CGACGGACCG TCATAAGCTC TGTAGGTCGT 241 CTATTCTGCA TTTCTTCACT CAAAATCTCC GCATTCATCT TTGGACAGAT TTCCTTAAAA 301 AGTAAATCGC TTACTACTGA ATGGAGATGC TTGGCGTCGA AAACATTGAG AACATGACCA 361 CCAGTATATC TTTTTCGTGA GATAAACCTT GCACCATACG TC Predicted gene structure (within gDNA segment 79819 to 83653): Exon 1 81691 81989 ( 299 n); cDNA 3 301 ( 299 n); score: 0.890 MATCH C08HBa0027D09.1+ SGN-E258181- 0.890 299 0.744 C PGS_C08HBa0027D09.1+_SGN-E258181- (81691 81989) Alignment (genomic DNA sequence = upper lines): GGGCCATCAT AGGCACAACG GTCCATCGAG GGTCTTCATT TCAAAACACT TCAACTCTTG 81750 || || |||| |||||||||| ||| || ||| ||| ||| || |||| ||||| | |||||||| GGACCGTCAT AGGCACAACG GTCTATAGAG GGTTTTCGTT TCAACACACT TGAACTCTTG 62 GAATCTGGGT ACTGGGATTA CTTCTCTGAT CATCATGATG AACCTACAGG ACGGACCGTC 81810 |||| ||||| ||||||| || ||||||||| | |||||| | ||||| |||| |||||||||| GAATATGGGT ACTGGGACTA CTTCTCTGAA CTTCATGACG AACCTGCAGG ACGGACCGTC 122 ACAAGATACG TAACCCCACA CTTGGTCAGA CTTCCCCATC TTCCTTCAGC AACTTCACTA 81870 | | | || || |||| || |||||||||| |||||||||| ||| |||||| | || ||||| ATGAACTCCG TAGCCCCGCA CTTGGTCAGA CTTCCCCATC TTCTTTCAGC AGCTGCACTA 182 CGCTGCCACC TACGGACCAT CACAAGCACG ACGGACCGTC ATAAGCTCCG TAGGTGGTCT 81930 |||||||||| ||| |||| | |||||||||| |||||||||| |||||||| | ||||| |||| CGCTGCCACC TACAGACCGT CACAAGCACG ACGGACCGTC ATAAGCTCTG TAGGTCGTCT 242 CTTCTGCATT TCTTCGCTCA AAATCTCCGC ATTCAGCTTT GGACAGATTT CCTGCAAAA 81989 ||||||||| ||||| |||| |||||||||| ||||| |||| |||||||||| ||| |||| ATTCTGCATT TCTTCACTCA AAATCTCCGC ATTCATCTTT GGACAGATTT CCTTAAAAA 301 hqPGS_C08HBa0027D09.1+_SGN-E258181- (81691 81989) ******************************************************************************** EST sequence 6 +strand 411 n (File: SGN-E577891+) 1 TTCGTTTCAA AATACTTCAG CTCTTGGAAT CTGGGTACTG GAATCACTTC TCTGATCTTC 61 ACGACGAACC TGCAGGACGG ACCGTCATAG CCATGACGGA CCGTCACAAT CTTCGTAATC 121 CCACACTTGG TGAGACTTCC CCATCTTCCT TCAGCAGCTT CTCTACGCTG CCACCTACGG 181 AGCGTCAAAG GCACGATGGA CCGTCATAAG CTCAGTAGGT GGTCTCTTCT ACATTTTTTC 241 GCTCAAAATC TCTGCTTTCA GCTTTGGACA GATTTCCTGC AAAATAAAGA GAAACTTATA 301 CCAAAATTAG CACAAAAAGG CTTACGGACA CACTAAACTT AAGGCAAAAG TATTAATTAT 361 ACCGTGAAAC CACGGTATAT CAGGGACATG AACTCGAAGG CCATTGTTGG C Predicted gene structure (within gDNA segment 79918 to 84355): Exon 1 81800 82088 ( 289 n); cDNA 95 382 ( 288 n); score: 0.907 MATCH C08HBa0027D09.1+ SGN-E577891+ 0.907 289 0.703 C PGS_C08HBa0027D09.1+_SGN-E577891+ (81800 82088) Alignment (genomic DNA sequence = upper lines): GACGGACCGT CACAAGATAC GTAACCCCAC ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG 81859 |||||||||| ||||| | | |||| ||||| ||||||| || |||||||||| |||||||||| GACGGACCGT CACAATCTTC GTAATCCCAC ACTTGGTGAG ACTTCCCCAT CTTCCTTCAG 154 CAACTTCACT ACGCTGCCAC CTACGGACCA TCACAAGCAC GACGGACCGT CATAAGCTCC 81919 || |||| || |||||||||| ||||||| | ||| | |||| || ||||||| ||||||||| CAGCTTCTCT ACGCTGCCAC CTACGGAGCG TCAAAGGCAC GATGGACCGT CATAAGCTCA 214 GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT 81979 |||||||||| |||||| ||| || ||||||| |||||||| | | |||||||| |||||||||| GTAGGTGGTC TCTTCTACAT TTTTTCGCTC AAAATCTCTG CTTTCAGCTT TGGACAGATT 274 TCCTGCAAAA CAAAGAGAAA CTTATATAAA AATTAGCACA AAAAAGGCTT TTGGACACAC 82039 |||||||||| ||||||||| |||||| || ||||||||| |||||||||| |||||||| TCCTGCAAAA TAAAGAGAAA CTTATACCAA AATTAGCAC- AAAAAGGCTT ACGGACACAC 333 TAAACTTAAG AAAAAAATAT TAATTATACC ATGAAACCAC GGTATATCA 82088 |||||||||| |||| ||| |||||||||| ||||||||| ||||||||| TAAACTTAAG GCAAAAGTAT TAATTATACC GTGAAACCAC GGTATATCA 382 hqPGS_C08HBa0027D09.1+_SGN-E577891+ (81800 82088) ******************************************************************************** EST sequence 317 -strand 816 n (File: SGN-E546067-) 1 TAGCCATGAC GGACCGTCAC AAGCTTCGTA ATCCCACACT TGGTCAGACT CCCCCATCTT 61 CTTTCAGCAA CTTCTCTACA CTGCCACCTA CGGACCGTCA CAAGCACGAC GGACCGTCAT 121 CAGCTCCATA GGTGGTCTCT TCTGCATTTC TTCTCTCAAA ATCTCCGCAT TTGGCTTTGG 181 ACAAATTTCA TGATCACTTC AGCTCGCGGC TCAATCCACA CGTCTGGATC TTCGGTATTT 241 TTCTTCTTTC TTATGTGTGT TGCCTTGAAT GCCTCAGCTT GAGTTACTGG TCTTCCTAGT 301 TCCTTTTCCA ATTTCCTCCT CACACTTCCT TGACTTTGAG CCCCACTTGG TGTAGAGAAC 361 CACCCTTAAT AGATGATCTA GCCTTCACAC CGATCTCGCT CATCTGCTTA AATCTTGAAT 421 CATTTTCCCA ATGCACAAGT AATTTTTTCC AATCATCCTA TAGAATCCAC TTAGGTTTTT 481 GATCATTTTT ACGAGCTTTA TTCAACAAAC TAGCAAGAAC ACGCGTAACT TTCTTGTGAA 541 AGTTTGCACA AATTTTGGCC TCATGTTCCA GATGCCAAGC ACATTGTTTC TAAACTCCAA 601 AAATATTTGT CTCTTGAGAT TGCTTGGCAT CTTGCCCCAA GTAGGAAAAG CATCTCTATA 661 GAGATCTTTG ATTGACTGAG AAATGATCTC CACAACATCA TCTGGATTGA AACTGTTCAA 721 AATTGATAAT TGGAGTTCTC AGGAATCAAC GACGGAAACT AGGTCTTCAC AGTAAGTGAT 781 GGAATGGTCG GCGACAAGCT CAATGGAGAG GCAACG Predicted gene structure (within gDNA segment 81120 to 90213): Exon 1 81800 81983 ( 184 n); cDNA 8 191 ( 184 n); score: 0.918 Intron 1 81984 87898 (5915 n); Pd: 0.000 (s: 0.90), Pa: 0.444 (s: 0) Exon 2 87899 87909 ( 11 n); cDNA 192 201 ( 10 n); score: 0.909 MATCH C08HBa0027D09.1+ SGN-E546067- 0.918 195 0.239 C PGS_C08HBa0027D09.1+_SGN-E546067- (81800 81983,87899 87909) Alignment (genomic DNA sequence = upper lines): GACGGACCGT CACAAGATAC GTAACCCCAC ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG 81859 |||||||||| |||||| | | |||| ||||| |||||||||| ||| |||||| |||| ||||| GACGGACCGT CACAAGCTTC GTAATCCCAC ACTTGGTCAG ACTCCCCCAT CTTCTTTCAG 67 CAACTTCACT ACGCTGCCAC CTACGGACCA TCACAAGCAC GACGGACCGT CATAAGCTCC 81919 ||||||| || || ||||||| ||||||||| |||||||||| |||||||||| ||| |||||| CAACTTCTCT ACACTGCCAC CTACGGACCG TCACAAGCAC GACGGACCGT CATCAGCTCC 127 GTAGGTGGTC TCTTCTGCAT TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT 81979 ||||||||| |||||||||| |||||| ||| |||||||||| |||| |||| |||||| ||| ATAGGTGGTC TCTTCTGCAT TTCTTCTCTC AAAATCTCCG CATTTGGCTT TGGACAAATT 187 TCCTGCAAAA CAAAGAGAAA CTTATATAAA AATTAGCACA AAAAAGGCTT TTGGACACAC 82039 || | TCAT...... .......... .......... .......... .......... .......... 191 TAAACTTAAG AAAAAAATAT TAATTATACC ATGAAACCAC GGTATATCAG TGTCTAGAAA 82099 .......... .......... .......... .......... .......... .......... 191 CATGTAAATG GGCTTAACTA CCCATGCTCC CTACTTTTTG TCACACCCCA AGCTTTCCCT 82159 .......... .......... .......... .......... .......... .......... 191 AGATGTAGCC CACACCCAAT GACCATTATT GGCCTTGAGC GAACCCTTGA CCTGACTTAC 82219 .......... .......... .......... .......... .......... .......... 191 TTAACTTAGC GGAATACTCA ACTCAACTAA ATAAAGAAAT AAAATATGGT TAAAAGTAAT 82279 .......... .......... .......... .......... .......... .......... 191 ACTTAGTATG ATAGTCTATC CAAAATGGCA CTTAAGTCTC AACACTTGAA GATTTGAAAT 82339 .......... .......... .......... .......... .......... .......... 191 TACATAGTAA ATAAGACTCA AAAACTGAAC TACTAAATGT CTATGAAGCC TCTAAAGTGA 82399 .......... .......... .......... .......... .......... .......... 191 CTGAGATGAA TGTTGAGAAA AAACCCACAA CATTCAATTG AACTAACTAG AGATCAATAA 82459 .......... .......... .......... .......... .......... .......... 191 AAAGATCATC CGGGATGCAA GGAGGCTCAT CACTGACTTT AGACCCCAAA TTGGATCAAC 82519 .......... .......... .......... .......... .......... .......... 191 TAAGTGTTGC ATGCTGATCC TGGTTACCTG CGTCTTCATC ATAAGACGAT GCAGAACAAC 82579 .......... .......... .......... .......... .......... .......... 191 TAGCATCAGT ACATTTAATG TACGAGTATG TGAGTTGGAA TGCTAAACAC AACTATAAGG 82639 .......... .......... .......... .......... .......... .......... 191 CTTGAAAGGA GTAAGAATGA ATTTACCTTG GCTCTGTTCA ACTCAAGAAG TCATAACTCA 82699 .......... .......... .......... .......... .......... .......... 191 ATATAAAGCA GTAAAGATGT ATGCAATATA AGGAGATCTC TTGAAAATCA TATTTTCATT 82759 .......... .......... .......... .......... .......... .......... 191 TTCGGTTCTC AATACTAAAC CCAAATATTT AGCTCATATG TTTTTAAAAC AACATCATTG 82819 .......... .......... .......... .......... .......... .......... 191 GTTTGATTTA ATTTCTCAAA CATATATTTA AAAGATCTCT TGAAAATCAT ATTTTCATTT 82879 .......... .......... .......... .......... .......... .......... 191 TTGTTTTACT AAAACTAACC ATAGTCTATG TGGAAGTCTG TATTCATCTC TTTCTCAAAT 82939 .......... .......... .......... .......... .......... .......... 191 GTTTGAAAAC ATTTTGTTTA AACTCTTAAG GACTACTTAA TTCTCGTATA ACACTTGAGA 82999 .......... .......... .......... .......... .......... .......... 191 AATGAACTCA CCTTGTTACG CTTTGCTTAA CTTGAAACTT AATTCTTAAG GAATACTTAG 83059 .......... .......... .......... .......... .......... .......... 191 TTCCCTTATA GCTTTTGAGA ATTTAATTCA ACTCTTTACT CTTTGCTCAA CTCATTTCTT 83119 .......... .......... .......... .......... .......... .......... 191 GAGACTTAAA AAAAAGTTAT AATGTTTGTT AAGACTCTTG AATGCTTTAG GGACTTACTT 83179 .......... .......... .......... .......... .......... .......... 191 TGACTTACTT CTTAACTTTT AAACTTGACT CTTAACTTCT TTGATTTTGA TCTTAACTTT 83239 .......... .......... .......... .......... .......... .......... 191 TCTTGAATTG GATTATGGAT TCAAGGATCA TGATCTCATA TTTAGGGACA ATTTCATGAT 83299 .......... .......... .......... .......... .......... .......... 191 GTTTAGATAT ACTTTAGAGT GTTTGAATCA GCTAGGAATA ATAAGTACAT CCCTTAGGAA 83359 .......... .......... .......... .......... .......... .......... 191 CTAGCACGAA AAGATGGGGG AGAAATGGGG ACTCTAGGTG ATCCTGGTGC TCTCAGAGGC 83419 .......... .......... .......... .......... .......... .......... 191 GCGGGGCGCT AGAGCAAGAC TGACAGAAAT CTACTTAGCT CATTTACCAC TACATTAGCT 83479 .......... .......... .......... .......... .......... .......... 191 TTTTCTGGGT GATATAAAAT AGTAATATTG TAGTCTTTCA ATAACTCCAT CCACTTTTTT 83539 .......... .......... .......... .......... .......... .......... 191 TCCCTCTAAT TCAAATCCTT CTAAATGAAC ACATATTGTA ACATGCAATG ATTTTTATAC 83599 .......... .......... .......... .......... .......... .......... 191 ACTTTTAACT TGACCCCATA GAGATAATGC CTCAATTGCT TTAGTGCAAA CACAACTACA 83659 .......... .......... .......... .......... .......... .......... 191 ACCAACTTCA AATCATGGTT CAGATAGTTA CATTCATGGA CTTTCAATTG TATTGAAACA 83719 .......... .......... .......... .......... .......... .......... 191 TAACAATTAA ATTCATCTCC TTCATTAGCA CTACACTCAA ATTAGAATCA GATGCATCAC 83779 .......... .......... .......... .......... .......... .......... 191 TAAAAATAGT GAAACTCTTA CCTTCCACCG GCAGGGAAAG AGTTGGTGGA ATACTCAAAA 83839 .......... .......... .......... .......... .......... .......... 191 AGGTTTTGTG TTTCAGGATG CTTTCTTCAT ACTCATCCGA CCATACAAAT GGAACATTTT 83899 .......... .......... .......... .......... .......... .......... 191 GCTTGGTCAA ATTGGTTAGC TTGGAAGCAT TAGAATAGAA TCCCTGGACA AATCGATGGT 83959 .......... .......... .......... .......... .......... .......... 191 AGTATCTAGC TAAACAACAA AGCTCCTTAC CTCAGAAACA TTGGTAGGGC TTATCCAACT 84019 .......... .......... .......... .......... .......... .......... 191 CTTCACTACT TCAATTTAAT GGGGTCCACC CTCACTCCAT CCGTAGAAAC CACGTTCCCT 84079 .......... .......... .......... .......... .......... .......... 191 AAGAAGGACA TTGAATAAAT CCAAAACTCA CACTTGGAGA ATTTTACATA AAGCCTTTTC 84139 .......... .......... .......... .......... .......... .......... 191 TCCCATAACA ACCTAATACA ATTCTCAAAT GCTCATCATG TTCCTTCGTG CTCTTTGAGT 84199 .......... .......... .......... .......... .......... .......... 191 ATATAAGTAT ATAATCAATT ATTACAATAA CAAATAGGTC TATATATAAA TTTAAAAATT 84259 .......... .......... .......... .......... .......... .......... 191 TATTCTTCAT GCTCATGAAG GATGCAAGGG CATTTATAGT CCCAAAAGAC ATTTCTAAGA 84319 .......... .......... .......... .......... .......... .......... 191 ATATATAATT CCCATACCTG GTTCGAAAAT AAGTCTTTGG CATGTCTATT GCCCACATTT 84379 .......... .......... .......... .......... .......... .......... 191 TCAATTGATG ATAACCGAAC CTCAAATCTA TTTTAGAGAT GACATAAGCA CCATGTAACT 84439 .......... .......... .......... .......... .......... .......... 191 AATCAAACAA GTCATCAATG CGAGGAATGA GGTACTTTTT ATTAATAGTT AACTTATTTA 84499 .......... .......... .......... .......... .......... .......... 191 ACTTTCTGTA GTCAATGCAC ATCCGAAAAC CATTATCGTT CTTCTTAAAA AATAAAACTG 84559 .......... .......... .......... .......... .......... .......... 191 GAGCACCACA AGGAGATGCA CTGGGTCTAA TAAAACCTTT ACCTAACAAC TCCTACAACT 84619 .......... .......... .......... .......... .......... .......... 191 GGGCCTTTAA CTCTCTTAAC TCAACTGGGG CCATTCTATA AAGTGGAATA CAAATGGGGT 84679 .......... .......... .......... .......... .......... .......... 191 GAGTCCTCGA CTTCAAGTCA ATTCAAGAAT CAATATCTCT TTCTAGTGGC ATACCACACA 84739 .......... .......... .......... .......... .......... .......... 191 TGTGTGTAGA AAAAACATCC ACAAACTCAC AAACTGTTGG AACAGACTCG ATCAAAGGCT 84799 .......... .......... .......... .......... .......... .......... 191 TTTTAGAAGT ATCATCTCTG AGATGTTCCG AGAAATCTAA ACAAGCCTTA CTCACCAACC 84859 .......... .......... .......... .......... .......... .......... 191 TCTTAGCACA AAGAAGAGAG ATAATATGAA TTGGGGTGGA AATATAGTCA AACTCTGACA 84919 .......... .......... .......... .......... .......... .......... 191 CTAGTGGATC TATCCCAAGC TTGGATATGG TCACACTCTT AGAATTACAA TCTAAGATAG 84979 .......... .......... .......... .......... .......... .......... 191 CAGATTCGGA GAAAGACACG TTATTCCAAA AATTATATCA AAATCAACCA TCTCTAGAAT 85039 .......... .......... .......... .......... .......... .......... 191 AATGATATCT ACATAACTGT TTATCTTAAA AAAATATCAT AAGGCAATAC CTTCTCAACT 85099 .......... .......... .......... .......... .......... .......... 191 ATCACAGACT CACTTACAGA CGTAGAGACA CAAATAAGCA AGTAACAATG CAAATCAAGA 85159 .......... .......... .......... .......... .......... .......... 191 CCAACAGCGA ACAAAGAAGA TATATAAGAA AATGTGGATC GAGTATCAAA CAATACCGAA 85219 .......... .......... .......... .......... .......... .......... 191 GCCATGTGAT CACAAACTAG AAGAGTACAT ATGATAACAA CATTATATGT CCCTACCTCT 85279 .......... .......... .......... .......... .......... .......... 191 GGGATCCAAG AGAAAACATA ACTATGGGCC CCATCACCTA TCAGTCCATT GCCCTGCCAC 85339 .......... .......... .......... .......... .......... .......... 191 ACTGCGCTCC AGTAGTTGCA ACCTTCTTGC CACCCCGACT GAACTTGTGC ACACCATTAT 85399 .......... .......... .......... .......... .......... .......... 191 CTTGATCAAC ACATCCCCCA AAATGATGGC CCTTTCCACG ACCACCTCTA CCTATGACTC 85459 .......... .......... .......... .......... .......... .......... 191 CTGAAGATCT GTAACTCTAA TCGCACAGAG GCTGACTTTT ATTTGGACAA TATTTCTTGA 85519 .......... .......... .......... .......... .......... .......... 191 TATTTCTAGC CTTAACACAT CCATAACAAG TCCTAGAATA GAGTGTAGGT ATTTGTAGAT 85579 .......... .......... .......... .......... .......... .......... 191 ATGAAGAAGA ATAGAGATAA CCCCCAAACT TTGAAAAAGA CAGATTGGTA TGCAATGGAC 85639 .......... .......... .......... .......... .......... .......... 191 CCTCAACTTT AGCCTACAGG GAAGACTGAA TAGAACGTGT GGATAGCCCC TGAACTCTGA 85699 .......... .......... .......... .......... .......... .......... 191 CCTCTTGAGT ACAAACCACT AAAGTCACCC CCTTAGAGAA ATTTTAAAAT ATTGACACCT 85759 .......... .......... .......... .......... .......... .......... 191 TGGTGAAGTC ATTCGGCTTC ACCCCCTTTA CCTCTATAAA AAAGTCAACC ACTTTTGATA 85819 .......... .......... .......... .......... .......... .......... 191 ATATTTTGTA GAAGCAACTA CTTGTAAAGA TGAAATCTTC AAATTTGACC TCAATCCCTT 85879 .......... .......... .......... .......... .......... .......... 191 TACGAACTGG AAAATCCACT CTTGCAGACT TAAGAAAAGA TGAATGACAT ACTTGGATAA 85939 .......... .......... .......... .......... .......... .......... 191 TGCACGAAAT TTAGCCTCAT AAGCTGCAAT AAACATCCTT CCTTTCTCAA TGTTTAGGAA 85999 .......... .......... .......... .......... .......... .......... 191 CTCATCTCTT CTCATGTTCC TAAAAATCCG TGGTATATAC TTCTCAATAA AGAAACTAGA 86059 .......... .......... .......... .......... .......... .......... 191 AGGGTGTCAA AGTCATATGT GGTGCCTTTT CTCGTCGACA CTTAACATGA GAACACCATC 86119 .......... .......... .......... .......... .......... .......... 191 ATATTTTGGC ATTCCCCTGA AACTAACTTG TCACAAACTC AACACAAAAC CTCTCCACTA 86179 .......... .......... .......... .......... .......... .......... 191 TGTCTATCTT ATATAGAAAC TCATGAAAAT CAACCAGGAA ATCATAAGCA TCTTCAAATT 86239 .......... .......... .......... .......... .......... .......... 191 CATTACCATT GAATATTGGA GGTTTCAAAT TTAAAAGCTC AATAAAAAGG TCATGGTGGT 86299 .......... .......... .......... .......... .......... .......... 191 CACTAGTATT TATAGGCCCT GTAGTCAATC GTGGAAACAT GCCTGTTTCC AAGGAAGCAT 86359 .......... .......... .......... .......... .......... .......... 191 CCATGCGGGA TGCCACCACA TCTGCATATT GTACTCCATG AACCTGAGGT GCTGGTGTAA 86419 .......... .......... .......... .......... .......... .......... 191 AAACTACTAA AGGTGTTTTA CCCTATCTAA GTGTTTGACC CACTGAGATA AGTAAGGTCC 86479 .......... .......... .......... .......... .......... .......... 191 TTATTTATAA TCTCTGAATA GGTTGTGGTG GTATTTTTTC CTCCAGAATC TGATCATCTT 86539 .......... .......... .......... .......... .......... .......... 191 CCCCTTCATC ACCCTCTCTC ACCACCTCAT CAGTCGGTGG AGGATTCACC GCTCTATCCC 86599 .......... .......... .......... .......... .......... .......... 191 TAACTGGACC GAAATCTTAT CCAATGCTTT TAGTGGGCCT TCCTCGTGAC CTCTACTATG 86659 .......... .......... .......... .......... .......... .......... 191 ACCTCTCACC ATTTCTCCCT TATCCACTTG CAGTCCCAAT GGTTGGCTTT GGATAGCCCT 86719 .......... .......... .......... .......... .......... .......... 191 ATCTTACCGG TGTTGGTGTT ATCACAACGT TTGCTCTAGT TCTACGATCT GCGAAATAGA 86779 .......... .......... .......... .......... .......... .......... 191 GTGAAAAAGG TTAGATACCA ATTGGATTTA AGTATAAAAC AAAATATAGA AAAATAATGG 86839 .......... .......... .......... .......... .......... .......... 191 TTTCCTAAAG TCCTATAGCC TTTCAAATAA AAGTAAAGTT TTCCCTATAC CATTCCGCAA 86899 .......... .......... .......... .......... .......... .......... 191 GAGTCTAGTA GACATGTCCT TGTGTGATGA GATCATAGAA CATAACGATC TGGTACAAAG 86959 .......... .......... .......... .......... .......... .......... 191 TTTGCCAAGA TGCAAAACAA GTCATGAGTG ACACTTACAC TTAACCTTAT AGGTTGTAGA 87019 .......... .......... .......... .......... .......... .......... 191 ACCAACAAAT TAAACCCCAA CTTATATTCA ATAGTTCAAC TACGGATAAC AACCATAATG 87079 .......... .......... .......... .......... .......... .......... 191 CTGAAGTTTA AAACTTATTA AAGTAACCAA TCAAATAAAC CTCTAAAGTC TATTATATAT 87139 .......... .......... .......... .......... .......... .......... 191 TATCCCCAAA ATTTAAATTC ATGTCCTAAA TGACATATGA TCTTCAAATA CTACATTTAA 87199 .......... .......... .......... .......... .......... .......... 191 GAGTATTAAA TACACCAAAA TAAATAAATA AAAAATTTAT TTCTGAAAAC TAAGGACATC 87259 .......... .......... .......... .......... .......... .......... 191 ATGCCATGAC CAAGAGAATC CAACATGAGC TTGAATGAAT GACTCACCCT CGAACCTCAT 87319 .......... .......... .......... .......... .......... .......... 191 ATGCTTGAGA CTAGCATGAG ATGAGGGCTA TTCAAAGTTG TTGCAACAGT TAATGAACTC 87379 .......... .......... .......... .......... .......... .......... 191 CACTAAAGAA ACACAAAGAA AAACAAAAGT AGGGATCACT ATAGGACAAC ATGTACTAAG 87439 .......... .......... .......... .......... .......... .......... 191 TAGATATCAT TGGTTAACTC AAAATAGTAA TTAATACGCA TAAAGTAATA ATATTTAGCA 87499 .......... .......... .......... .......... .......... .......... 191 AGTGATAAAC AACAAACGAC ATGAACAAGT GACAACTGAA AAAAGTATCT AATCATTCAC 87559 .......... .......... .......... .......... .......... .......... 191 GATATCAAGC ACACACACGA GGACTCATGC CCCCACACCA TGCTCGTTTT AGAAATGGGT 87619 .......... .......... .......... .......... .......... .......... 191 TCTTTGAGAT AGAGTACAAT CAATTAATTC AATATGCTTT CCTCTATAAT ATTGCCATGT 87679 .......... .......... .......... .......... .......... .......... 191 CAGAATGTAA CACCCTTACC CAATAATGCA GTATCAAAAT ATGACACCCC GATCCAATAA 87739 .......... .......... .......... .......... .......... .......... 191 TATTGTATCA AATTGTGACA CCGCGATCCA ATAATACCAT GTCGAAAAGT GGCACCCCAA 87799 .......... .......... .......... .......... .......... .......... 191 TGCAATAATA CCGTGTCGGA ACGTAACACC CCAATCAAAA AATATTATCA CCACTTTTCA 87859 .......... .......... .......... .......... .......... .......... 191 CTTTCTTAAC AATATTTCAT CAAGCCTTCT TTTTTCAAGG CATCACTTCA 87909 | ||||||||| .......... .......... .......... .........G -ATCACTTCA 201 hqPGS_C08HBa0027D09.1+_SGN-E546067- (81800 81983) ******************************************************************************** EST sequence 190 -strand 624 n (File: SGN-E336039-) 1 ACCGTCATAA GCTCCGTAGG TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCTACATTC 61 ATCTTTGGAC AGATTTCTGT GAAACCACGT TATATCAACT GTCCATCACG CACTCCGTAA 121 CCCCATGCTT GGTCAGAATT CTCCATCTTC TTTCAGCAGC TGCGCTACGA TACCATCTAC 181 GGATCTTCAC GAGCACGACG AACCGTCACA ATCTCCGTAG GTGGTAGTTT TCTATATTTC 241 TTGCTAAAAA ACCTCCGTAT TCATCTTTTA GACAAATTTC CTCCCATTTC TGGTTGGAGC 301 CTACTCGTCT ATCGCATGTT CTCGCTGCTG CTTGCTGCTG TCGGAGCTGG TGGCCGGAGT 361 TTTGCTGTTG CTGCTCCTAA TCCTGCAAAA AGAAGAGGAA CGAGAGGTGG AGGGAGATGG 421 CTTGGCGTCG ACTACTGGCT GTCCTTGCCT GTGGAGCTGC TCGCTGCTCT CCTCGCCTCC 481 ACTGGAGAGA ATGGGGTAAC GAGAGGAGGG GGGACGGCAG CTACCTGGCT CTTCGCCAGT 541 TGCTGCTGCC CACCGGTGGT GTTTGGAGCC GCTGGAATTG AGAAGACGAG AGGAGGAGGA 601 GCAACGGAGG AGTTGGAGGC GGAT Predicted gene structure (within gDNA segment 80695 to 88267): Exon 1 81801 81983 ( 183 n); cDNA 98 282 ( 185 n); score: 0.762 MATCH C08HBa0027D09.1+ SGN-E336039- 0.762 183 0.293 C PGS_C08HBa0027D09.1+_SGN-E336039- (81801 81983) Alignment (genomic DNA sequence = upper lines): ACGGACCGTC ACAAGATACG TAACCCCACA CTTGGTCAGA CTTCCCCATC TTCCTTCAGC 81860 || | || || || | || |||||||| |||||||||| ||| ||||| ||| |||||| ACTGTCCATC ACGCACTCCG TAACCCCATG CTTGGTCAGA ATTCTCCATC TTCTTTCAGC 157 AACTTCACTA CGCTGCCACC TACGGACCAT CACAAGCACG ACGGACCGTC ATAAGCTCCG 81920 | || | ||| || | ||| | |||||| | | ||| |||||| ||| |||||| | || ||||| AGCTGCGCTA CGATACCATC TACGGATCTT CACGAGCACG ACGAACCGTC ACAATCTCCG 217 TAGGTGGT-C TCTTCTGCAT TTCTTCGCT- CAAAATCTCC GCATTCAGC- TTTGGACAGA 81977 |||||||| | |||| || ||||| ||| |||| |||| | ||||| | ||| |||| | TAGGTGGTAG TTTTCTATAT TTCTT-GCTA AAAAACCTCC GTATTCATCT TTTAGACAAA 276 TTTCCT 81983 |||||| TTTCCT 282 hqPGS_C08HBa0027D09.1+_SGN-E336039- (81801 81983) ******************************************************************************** EST sequence 120 +strand 222 n (File: SGN-E356584+) 1 CCCCACACTT GTTCAGAATT CCCCATCTTC CTTCATCAGC AGAACTACGA TGTCACCTAT 61 GGACCGGCAC GAGGATGACG GACCGTGAAA AGCTCAGTAG GTTGTACTTT TCTGTATTTC 121 ATGCTCAAAA ACTTTTGAAT TCATCTTTTA CACAGATTTC CTGCAAATAA AGAGAAACTT 181 ATATCAAAAT TAGCACAAAA AGGCTTTTGG ACACACTAAA CT Predicted gene structure (within gDNA segment 79863 to 82655): Exon 1 81824 82045 ( 222 n); cDNA 1 222 ( 222 n); score: 0.813 MATCH C08HBa0027D09.1+ SGN-E356584+ 0.813 222 1.000 C PGS_C08HBa0027D09.1+_SGN-E356584+ (81824 82045) Alignment (genomic DNA sequence = upper lines): CCCCACACTT GGTCAGACTT CCCCATCTTC CTTCAGCAAC TTCACTACGC TGCCACCTAC 81883 |||||||||| | ||||| || |||||||||| ||||| || | |||||| || |||||| CCCCACACTT GTTCAGAATT CCCCATCTTC CTTCATCAGC AGAACTACGA TGTCACCTAT 60 GGACCATCAC AAGCACGACG GACCGTCATA AGCTCCGTAG GTGGT-CTCT TCTGCATTTC 81942 ||||| ||| || | |||| |||||| | | ||||| |||| || || || | |||| ||||| GGACCGGCAC GAGGATGACG GACCGTGAAA AGCTCAGTAG GTTGTACTTT TCTGTATTTC 120 TTCGCTCAAA ATC-TCCGCA TTCAGC-TTT GGACAGATTT CCTGCAAAAC AAAGAGAAAC 82000 | ||||||| | | | | | |||| | ||| |||||||| ||||| ||| |||||||||| AT-GCTCAAA AACTTTTGAA TTCATCTTTT ACACAGATTT CCTGC-AAAT AAAGAGAAAC 178 TTATATAAAA ATTAGCACAA AAAAGGCTTT TGGACACACT AAACT 82045 |||||| ||| |||||||| | |||||||||| |||||||||| ||||| TTATATCAAA ATTAGCAC-A AAAAGGCTTT TGGACACACT AAACT 222 hqPGS_C08HBa0027D09.1+_SGN-E356584+ (81824 82045) Total number of EST alignments reported: 327 ________________________________________________________________________________ Predicted gene locations (13) in segment 1 to 116639: PGL 1 (- strand): 22641 19346 AGS-1 (22641 22484,22329 22152,22019 21863,19537 19346) SCR (e 1.000 d 0.997 a 1.000,e 1.000 d 0.996 a 0.993,e 1.000 d 0.994 a 0.999,e 1.000) Exon 1 22641 22484 ( 158 n); score: 1.000 Intron 1 22483 22330 ( 154 n); Pd: 0.997 Pa: 1.000 Exon 2 22329 22152 ( 178 n); score: 1.000 Intron 2 22151 22020 ( 132 n); Pd: 0.996 Pa: 0.993 Exon 3 22019 21863 ( 157 n); score: 1.000 Intron 3 21862 19538 (2325 n); Pd: 0.994 Pa: 0.999 Exon 4 19537 19346 ( 192 n); score: 1.000 PGS (22620 22484,22329 22152,22019 21863,19537 19346) SGN-E346307+ PGS (22622 22484,22329 22152,22019 21863,19537 19360) SGN-E377730+ PGS (22622 22484,22329 22152,22019 21863,19537 19457) SGN-E231929+ PGS (22526 22484,22329 22152,22019 21863) SGN-E289418+ PGS (22641 22484,22329 22152,22019 21946) SGN-E241148+ 3-phase translation of AGS-1 (-strand): . . . . . . 22641 GAATAAAATACGAAACTGTACTTTTCCCTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAA E - N T K L Y F S L N L V F F S S V E K N K I R N C T F P L I - C F F Q V - R K I K Y E T V L F P - F S V F F K C R E . . . . . . 22581 AATGCAAGAGCAAGCGACGAGTTCTATTGCCGCTAGTTCACTACCTTCAAGTAGTGAGAG N A R A S D E F Y C R - F T T F K - - E M Q E Q A T S S I A A S S L P S S S E R K C K S K R R V L L P L V H Y L Q V V R . . . . : . . 22521 ATCATCTAGTTCAGCTTTACATCATGAACTCAAAGAAG : GTATGGAGAGTGATGATGAGAT I I - F S F T S - T Q R R : Y G E - - - D S S S S A L H H E L K E : G M E S D D E I D H L V Q L Y I M N S K K : V W R V M M R . . . . . . 22307 CAGAAGAGTGCCGGAGATGGGCGGAGAAGCGACGGGGACAACGTCAGCTTCTGGAAGAGA Q K S A G D G R R S D G D N V S F W K R R R V P E M G G E A T G T T S A S G R D S E E C R R W A E K R R G Q R Q L L E E . . . . . . 22247 TGGAGTATCGGCCGCCGGTCAAGCTCAACCATCAGCTGGGACTCAAAGGAAGAGAGGAAG W S I G R R S S S T I S W D S K E E R K G V S A A G Q A Q P S A G T Q R K R G R M E Y R P P V K L N H Q L G L K G R E E . . . . : . . 22187 AAGCCCAGCTGACAAAGAAAACAAAAGGTTAAAAAG : ATTGTTGAGAAATAGAGTATCAGC K P S - Q R K Q K V K K : I V E K - S I S S P A D K E N K R L K R : L L R N R V S A E A Q L T K K T K G - K : D C - E I E Y Q . . . . . . 21995 ACAACAAGCAAGGGAGAGGAAGAAAGCATATTTGATAGATCTGGAAGCAAGGGTGAAGGA T T S K G E E E S I F D R S G S K G E G Q Q A R E R K K A Y L I D L E A R V K E H N K Q G R G R K H I - - I W K Q G - R . . . . . . 21935 ATTGGAAACAAAGAATGCAGAACTTGAAGAGAGGTTGTCTACTTTGCAAAATGAGAACCA I G N K E C R T - R E V V Y F A K - E P L E T K N A E L E E R L S T L Q N E N Q N W K Q R M Q N L K R G C L L C K M R T . . : . . . . 21875 AATGCTTAGACAT : ATACTGAAGAACACAACAGCAGGTGCACAGGAAGGGAGGAAGTAGAC N A - T : Y T E E H N S R C T G R E E V D M L R H : I L K N T T A G A Q E G R K - T K C L D I : Y - R T Q Q Q V H R K G G S R . . . . . . 19490 ATATGATCGATCTTATGTCGATATGTCAGCATTCTTGTTTAGATCCTATGTAGGCACTGA I - S I L C R Y V S I L V - I L C R H - Y D R S Y V D M S A F L F R S Y V G T E H M I D L M S I C Q H S C L D P M - A L . . . . . . 19430 AGAGAAATTCTCTTCTGGATTTGAGAATGCATGCTAGTTTCGGGTGGATTGTTCTGATTT R E I L F W I - E C M L V S G G L F - F E K F S S G F E N A C - F R V D C S D L K R N S L L D L R M H A S F G W I V L I . . . 19370 GATGCATTGCATACTTGCTACTCTT D A L H T C Y S M H C I L A T L - C I A Y L L L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-1_AGS-1_PPS_1 (22586 22484,22329 22152,22019 21863,19537 19493) (frame '2'; 480 bp, 160 residues) 1 RKMQEQATSS IAASSLPSSS ERSSSSALHH ELKEGMESDD EIRRVPEMGG EATGTTSASG 61 RDGVSAAGQA QPSAGTQRKR GRSPADKENK RLKRLLRNRV SAQQARERKK AYLIDLEARV 121 KELETKNAEL EERLSTLQNE NQMLRHILKN TTAGAQEGRK - AGS-2 (22614 22484,22329 22152,22019 21863,21761 21757) SCR (e 1.000 d 0.997 a 1.000,e 1.000 d 0.996 a 0.993,e 0.984 d 0.994 a 0.876,e 1.000) Exon 1 22614 22484 ( 131 n); score: 1.000 Intron 1 22483 22330 ( 154 n); Pd: 0.997 Pa: 1.000 Exon 2 22329 22152 ( 178 n); score: 1.000 Intron 2 22151 22020 ( 132 n); Pd: 0.996 Pa: 0.993 Exon 3 22019 21863 ( 157 n); score: 0.984 Intron 3 21862 21762 ( 101 n); Pd: 0.994 Pa: 0.876 Exon 4 21761 21757 ( 5 n); score: 1.000 PGS (22614 22484,22329 22152,22019 21863,21761 21757) SGN-E251111+ 3-phase translation of AGS-2 (-strand): . . . . . . 22614 CTTAATTTAGTGTTTTTTTCAAGTGTAGAGAAAAATGCAAGAGCAAGCGACGAGTTCTAT L N L V F F S S V E K N A R A S D E F Y L I - C F F Q V - R K M Q E Q A T S S I - F S V F F K C R E K C K S K R R V L . . . . . . 22554 TGCCGCTAGTTCACTACCTTCAAGTAGTGAGAGATCATCTAGTTCAGCTTTACATCATGA C R - F T T F K - - E I I - F S F T S - A A S S L P S S S E R S S S S A L H H E L P L V H Y L Q V V R D H L V Q L Y I M . . : . . . . 22494 ACTCAAAGAAG : GTATGGAGAGTGATGATGAGATCAGAAGAGTGCCGGAGATGGGCGGAGA T Q R R : Y G E - - - D Q K S A G D G R R L K E : G M E S D D E I R R V P E M G G E N S K K : V W R V M M R S E E C R R W A E . . . . . . 22280 AGCGACGGGGACAACGTCAGCTTCTGGAAGAGATGGAGTATCGGCCGCCGGTCAAGCTCA S D G D N V S F W K R W S I G R R S S S A T G T T S A S G R D G V S A A G Q A Q K R R G Q R Q L L E E M E Y R P P V K L . . . . . . 22220 ACCATCAGCTGGGACTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAAGAAAACAAAAG T I S W D S K E E R K K P S - Q R K Q K P S A G T Q R K R G R S P A D K E N K R N H Q L G L K G R E E E A Q L T K K T K . : . . . . . 22160 GTTAAAAAG : ATTGTTGAGAAATAGAGTATCAGCACAACAAGCAAGGGAGAGGAAGAAAGC V K K : I V E K - S I S T T S K G E E E S L K R : L L R N R V S A Q Q A R E R K K A G - K : D C - E I E Y Q H N K Q G R G R K . . . . . . 21968 ATATTTGATAGATCTGGAAGCAAGGGTGAAGGAATTGGAAACAAAGAATGCAGAACTTGA I F D R S G S K G E G I G N K E C R T - Y L I D L E A R V K E L E T K N A E L E H I - - I W K Q G - R N W K Q R M Q N L . . . . . : . 21908 AGAGAGGTTGTCTACTTTGCAAAATGAGAACCAAATGCTTAGACAT : ATACT R E V V Y F A K - E P N A - T : Y T E R L S T L Q N E N Q M L R H : I K R G C L L C K M R T K C L D I : Y Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-1_AGS-2_PPS_1 (22586 22484,22329 22152,22019 21863,21761 21759) (frame '2'; 441 bp, 147 residues) 1 RKMQEQATSS IAASSLPSSS ERSSSSALHH ELKEGMESDD EIRRVPEMGG EATGTTSASG 61 RDGVSAAGQA QPSAGTQRKR GRSPADKENK RLKRLLRNRV SAQQARERKK AYLIDLEARV 121 KELETKNAEL EERLSTLQNE NQMLRHI PGL 2 (+ strand): 27520 28502 AGS-1 (27520 28502) SCR (e 0.779) Exon 1 27520 28502 ( 983 n); score: 0.779 PGS (27520 27935) SGN-E370357+ PGS (27698 28389) SGN-E546506+ PGS (27802 28502) SGN-E241789+ PGS (27843 28244) SGN-E246710- PGS (27998 28442) SGN-E349977- PGS (28126 28244) SGN-E391780- 3-phase translation of AGS-1 (+strand): . . . . . . 27520 TGTCACGACCCAAAACGAGTCACGAGTGGCACCCACATTTATCCTCTTATGTGAGCAAAC C H D P K R V T S G T H I Y P L M - A N V T T Q N E S R V A P T F I L L C E Q T S R P K T S H E W H P H L S S Y V S K . . . . . . 27580 CAACCAATCTAAACCCCAAATCATTTACCAATAATTGAACCATAATGAACAGAATACAAT Q P I - T P N H L P I I E P - - T E Y N N Q S K P Q I I Y Q - L N H N E Q N T M P T N L N P K S F T N N - T I M N R I Q . . . . . . 27640 GCGGATGATTTAAAACTCATTAATGAAAATAGATTAATAACTTCTAAACACTCAATACTT A D D L K L I N E N R L I T S K H S I L R M I - N S L M K I D - - L L N T Q Y L C G - F K T H - - K - I N N F - T L N T . . . . . . 27700 ATTATTCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATCCTCAAATTACTAAATC I I P K I W K S S P Q E H L S S N Y - I L F P K S G S H H H K N I Y P Q I T K S Y Y S Q N L E V I T T R T S I L K L L N . . . . . . 27760 TAAGAGTATGTAAGAAGCTAAAATAAATAAACAGCTAGTCTGTGCCAGAACTTCAAGGCG - E Y V R S - N K - T A S L C Q N F K A K S M - E A K I N K Q L V C A R T S R R L R V C K K L K - I N S - S V P E L Q G . . . . . . 27820 TCAAGACGTGAAGAAGAAGATCCAGTCCAAGCTAGAAACAATAGCTCACCCTGAATTCTG S R R E E E D P V Q A R N N S S P - I L Q D V K K K I Q S K L E T I A H P E F W V K T - R R R S S P S - K Q - L T L N S . . . . . . 27880 GTGTGATGAAGACTGGCTAGAGTTGAGAACGAGTTGAAGACGATGGCACGCTTGCTGCAC V - - R L A R V E N E L K T M A R L L H C D E D W L E L R T S - R R W H A C C T G V M K T G - S - E R V E D D G T L A A . . . . . . 27940 TCCACAAATAACAAGAAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAG S T N N K K N K Y K - G S V Q G T S T E P Q I T R K T N T S R G Q Y K A Q V L S L H K - Q E K Q I Q V G V S T R H K Y - . . . . . . 28000 TAGGTATCATCGACCAACTCAAAATAGAAAGCAATATATATCAGATAATAGTATAAAATC - V S S T N S K - K A I Y I R - - Y K I R Y H R P T Q N R K Q Y I S D N S I K S V G I I D Q L K I E S N I Y Q I I V - N . . . . . . 28060 AACCGTAACACTTAACAGATGACAACAACAAGTACCATAACCATTGGCCACAACCCAAGC N R N T - Q M T T T S T I T I G H N P S T V T L N R - Q Q Q V P - P L A T T Q A Q P - H L T D D N N K Y H N H W P Q P K . . . . . . 28120 ACATCTATGAGGACTCAAGCCTCCACACCATACTCATTTGGGAAATAGGTTCTTTAGATT T S M R T Q A S T P Y S F G K - V L - I H L - G L K P P H H T H L G N R F F R L H I Y E D S S L H T I L I W E I G S L D . . . . . . 28180 GAGTATATTAACATATTTCAAGATTCATTATTTTTACTATCCTGGTGTCGGAACGTGACA E Y I N I F Q D S L F L L S W C R N V T S I L T Y F K I H Y F Y Y P G V G T - H - V Y - H I S R F I I F T I L V S E R D . . . . . . 28240 CTCCGATCCTCCTCATACTATCCTGGCGTCGGAACGTGACACCCGATCCACTACTACTAT L R S S S Y Y P G V G T - H P I H Y Y Y S D P P H T I L A S E R D T R S T T T I T P I L L I L S W R R N V T P D P L L L . . . . . . 28300 CCTGGTGTCGGAACGTGACACTCCGATCCTCTACTATCCTGGTGTCGAAATGTGACACCC P G V G T - H S D P L L S W C R N V T P L V S E R D T P I L Y Y P G V E M - H P S W C R N V T L R S S T I L V S K C D T . . . . . . 28360 GATCCACTACTACTATCCTAGTGCCGGAACGTGACACCCGATCCACTACTACTATCCTGG D P L L L S - C R N V T P D P L L L S W I H Y Y Y P S A G T - H P I H Y Y Y P G R S T T T I L V P E R D T R S T T T I L . . . . . . 28420 TGTCGGAACGTGACACCCGATCCATTAACCTCATTCTTTTAGTTCATCAAACCTTCTTTT C R N V T P D P L T S F F - F I K P S F V G T - H P I H - P H S F S S S N L L L V S E R D T R S I N L I L L V H Q T F F . . . 28480 ATACTAAGGCATCATCATTAACA I L R H H H - Y - G I I I N Y T K A S S L T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-2_AGS-1_PPS_1 (28191 28502) (frame '0'; 312 bp, 104 residues) 1 HISRFIIFTI LVSERDTPIL LILSWRRNVT PDPLLLSWCR NVTLRSSTIL VSKCDTRSTT 61 TILVPERDTR STTTILVSER DTRSINLILL VHQTFFYTKA SSLT 3-phase translation of AGS-1 (-strand): . . . . . . 28502 TGTTAATGATGATGCCTTAGTATAAAAGAAGGTTTGATGAACTAAAAGAATGAGGTTAAT C - - - C L S I K E G L M N - K N E V N V N D D A L V - K K V - - T K R M R L M L M M M P - Y K R R F D E L K E - G - . . . . . . 28442 GGATCGGGTGTCACGTTCCGACACCAGGATAGTAGTAGTGGATCGGGTGTCACGTTCCGG G S G V T F R H Q D S S S G S G V T F R D R V S R S D T R I V V V D R V S R S G W I G C H V P T P G - - - W I G C H V P . . . . . . 28382 CACTAGGATAGTAGTAGTGGATCGGGTGTCACATTTCGACACCAGGATAGTAGAGGATCG H - D S S S G S G V T F R H Q D S R G S T R I V V V D R V S H F D T R I V E D R A L G - - - W I G C H I S T P G - - R I . . . . . . 28322 GAGTGTCACGTTCCGACACCAGGATAGTAGTAGTGGATCGGGTGTCACGTTCCGACGCCA E C H V P T P G - - - W I G C H V P T P S V T F R H Q D S S S G S G V T F R R Q G V S R S D T R I V V V D R V S R S D A . . . . . . 28262 GGATAGTATGAGGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTAAAAATAATGAA G - Y E E D R S V T F R H Q D S K N N E D S M R R I G V S R S D T R I V K I M N R I V - G G S E C H V P T P G - - K - - . . . . . . 28202 TCTTGAAATATGTTAATATACTCAATCTAAAGAACCTATTTCCCAAATGAGTATGGTGTG S - N M L I Y S I - R T Y F P N E Y G V L E I C - Y T Q S K E P I S Q M S M V W I L K Y V N I L N L K N L F P K - V W C . . . . . . 28142 GAGGCTTGAGTCCTCATAGATGTGCTTGGGTTGTGGCCAATGGTTATGGTACTTGTTGTT E A - V L I D V L G L W P M V M V L V V R L E S S - M C L G C G Q W L W Y L L L G G L S P H R C A W V V A N G Y G T C C . . . . . . 28082 GTCATCTGTTAAGTGTTACGGTTGATTTTATACTATTATCTGATATATATTGCTTTCTAT V I C - V L R L I L Y Y Y L I Y I A F Y S S V K C Y G - F Y T I I - Y I L L S I C H L L S V T V D F I L L S D I Y C F L . . . . . . 28022 TTTGAGTTGGTCGATGATACCTACTCAGTACTTGTGCCTTGTACTGACCCCTACTTGTAT F E L V D D T Y S V L V P C T D P Y L Y L S W S M I P T Q Y L C L V L T P T C I F - V G R - Y L L S T C A L Y - P L L V . . . . . . 27962 TTGTTTTTCTTGTTATTTGTGGAGTGCAGCAAGCGTGCCATCGTCTTCAACTCGTTCTCA L F F L L F V E C S K R A I V F N S F S C F S C Y L W S A A S V P S S S T R S Q F V F L V I C G V Q Q A C H R L Q L V L . . . . . . 27902 ACTCTAGCCAGTCTTCATCACACCAGAATTCAGGGTGAGCTATTGTTTCTAGCTTGGACT T L A S L H H T R I Q G E L L F L A W T L - P V F I T P E F R V S Y C F - L G L N S S Q S S S H Q N S G - A I V S S L D . . . . . . 27842 GGATCTTCTTCTTCACGTCTTGACGCCTTGAAGTTCTGGCACAGACTAGCTGTTTATTTA G S S S S R L D A L K F W H R L A V Y L D L L L H V L T P - S S G T D - L F I Y W I F F F T S - R L E V L A Q T S C L F . . . . . . 27782 TTTTAGCTTCTTACATACTCTTAGATTTAGTAATTTGAGGATAGATGTTCTTGTGGTGAT F - L L T Y S - I - - F E D R C S C G D F S F L H T L R F S N L R I D V L V V M I L A S Y I L L D L V I - G - M F L W - . . . . . . 27722 GACTTCCAGATTTTGGGAATAATAAGTATTGAGTGTTTAGAAGTTATTAATCTATTTTCA D F Q I L G I I S I E C L E V I N L F S T S R F W E - - V L S V - K L L I Y F H - L P D F G N N K Y - V F R S Y - S I F . . . . . . 27662 TTAATGAGTTTTAAATCATCCGCATTGTATTCTGTTCATTATGGTTCAATTATTGGTAAA L M S F K S S A L Y S V H Y G S I I G K - - V L N H P H C I L F I M V Q L L V N I N E F - I I R I V F C S L W F N Y W - . . . . . . 27602 TGATTTGGGGTTTAGATTGGTTGGTTTGCTCACATAAGAGGATAAATGTGGGTGCCACTC - F G V - I G W F A H I R G - M W V P L D L G F R L V G L L T - E D K C G C H S M I W G L D W L V C S H K R I N V G A T . . . 27542 GTGACTCGTTTTGGGTCGTGACA V T R F G S - - L V L G R D R D S F W V V T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-2_AGS-1_PPS_1 (28070 27777) (frame '1'; 291 bp, 97 residues) 1 VLRLILYYYL IYIAFYFELV DDTYSVLVPC TDPYLYLFFL LFVECSKRAI VFNSFSTLAS 61 LHHTRIQGEL LFLAWTGSSS SRLDALKFWH RLAVYLF- >C08HBa0027D09.1-_PGL-2_AGS-1_PPS_2 (28462 28187) (frame '2'; 273 bp, 91 residues) 1 TKRMRLMDRV SRSDTRIVVV DRVSRSGTRI VVVDRVSHFD TRIVEDRSVT FRHQDSSSGS 61 GVTFRRQDSM RRIGVSRSDT RIVKIMNLEI C- PGL 3 (+ strand): 28862 41092 AGS-1 (28862 29884) SCR (e 0.881) Exon 1 28862 29884 (1023 n); score: 0.881 PGS (28862 29210) SGN-E242274- PGS (29024 29542) SGN-E252199- PGS (29203 29884) SGN-E354383- 3-phase translation of AGS-1 (+strand): . . . . . . 28862 TTATTCCAAGGTTGTCTCCTTTAACCCTCAAGTAATTGAATTATTAACATTAACCCACTA L F Q G C L L - P S S N - I I N I N P L Y S K V V S F N P Q V I E L L T L T H - I P R L S P L T L K - L N Y - H - P T . . . . . . 28922 ACTTTATAATTATAAGCAGGAATAGTCCAAAACGCTCATTAAAAACTTTTAACAGAAATC T L - L - A G I V Q N A H - K L L T E I L Y N Y K Q E - S K T L I K N F - Q K S N F I I I S R N S P K R S L K T F N R N . . . . . . 28982 CGACCCAGTCAGGATTACGCAGTCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTG R P S Q D Y A V C D G P S C L R R S V L D P V R I T Q S V T A R R A C D G P S C P T Q S G L R S L - R P V V P A T V R P . . . . . . 29042 CTGAGTCGTCACAGAGTTCAGAGACTCAATTCTATTTAAGAGGTCTATGACGGCCCGTCT L S R H R V Q R L N S I - E V Y D G P S - V V T E F R D S I L F K R S M T A R L A E S S Q S S E T Q F Y L R G L - R P V . . . . . . 29102 TGCCTGCGAAGGTCCGTCCTGCCATTCTGTCGCAAAGTTCAGAGAGTCGATCTCAGTACC C L R R S V L P F C R K V Q R V D L S T A C E G P S C H S V A K F R E S I S V P L P A K V R P A I L S Q S S E S R S Q Y . . . . . . 29162 CAAATTTTCAGAATCTAAGTGTTTTGGAACGAGACCCCCTCGACGGTCCGTCGAGGGATC Q I F R I - V F W N E T P S T V R R G I K F S E S K C F G T R P P R R S V E G S P N F Q N L S V L E R D P L D G P S R D . . . . . . 29222 CGTCGACCCAGACAGTTATTACCAGAATAAACTCTACTTCTCAAAACGACTAAACAGGTC R R P R Q L L P E - T L L L K T T K Q V V D P D S Y Y Q N K L Y F S K R L N R S P S T Q T V I T R I N S T S Q N D - T G . . . . . . 29282 GTTACAATAAATACCAATTTACCCATCGTTCGTCCTCGAACGATCACCGGAAGAAAAACA V T I N T N L P I V R P R T I T G R K T L Q - I P I Y P S F V L E R S P E E K Q R Y N K Y Q F T H R S S S N D H R K K N . . . . . . 29342 AGGGCGAGAAAGAGTACCTGAGTCTGTAAAAAGGTGTGGATATTTTTTTTGCATATCAAC R A R K S T - V C K K V W I F F L H I N G R E R V P E S V K R C G Y F F C I S T K G E K E Y L S L - K G V D I F F A Y Q . . . . . . 29402 CTCCTTCTCCCAGGTGGACTCTTCAACTGGTCGATTCTTCCACTGAACCTTGATTGATGC L L L P G G L F N W S I L P L N L D - C S F S Q V D S S T G R F F H - T L I D A P P S P R W T L Q L V D S S T E P - L M . . . . . . 29462 AATCTCCCTTGACCTCAACTTGCGGACTTCTCTATCTAAGATAGCAACAGGCTCCTCCTC N L P - P Q L A D F S I - D S N R L L L I S L D L N L R T S L S K I A T G S S S Q S P L T S T C G L L Y L R - Q Q A P P . . . . . . 29522 ATAAGACAAATTCTCATCAAGCAGAACTGAATCCCAACGAATGATGTAGTTTCCATCCCC I R Q I L I K Q N - I P T N D V V S I P - D K F S S S R T E S Q R M M - F P S P H K T N S H Q A E L N P N E - C S F H P . . . . . . 29582 ATGGTATCTTTTCAACATAGACACATGAAATACCGGATGCACTCCTGACAGTCCTGGGGG M V S F Q H R H M K Y R M H S - Q S W G W Y L F N I D T - N T G C T P D S P G G H G I F S T - T H E I P D A L L T V L G . . . . . . 29642 CAAGGCTAATTCATAAGCTACCTCCCCCACGCGCTTCAGAACTTCAAATGGACCAATATA Q G - F I S Y L P H A L Q N F K W T N I K A N S - A T S P T R F R T S N G P I Y A R L I H K L P P P R A S E L Q M D Q Y . . . . . . 29702 CCTCGGACTAAGCTTACCTCGCTTACCAAACCACATCACCCCTTTCATGGGCGAAACCTT P R T K L T S L T K P H H P F H G R N L L G L S L P R L P N H I T P F M G E T F T S D - A Y L A Y Q T T S P L S W A K P . . . . . . 29762 CAGCAAGACTTGCTCACCCTCCATAAATGCCAAGTCTCTAACCTTTCAATCTGCGTATTC Q Q D L L T L H K C Q V S N L S I C V F S K T C S P S I N A K S L T F Q S A Y S S A R L A H P P - M P S L - P F N L R I . . . . . . 29822 TTTCTGCCTACTTTGAGCCGCTAAAAGCTTTTCTTGAATGCATTTCACTTTATCTAACGA F L P T L S R - K L F L N A F H F I - R F C L L - A A K S F S - M H F T L S N D L S A Y F E P L K A F L E C I S L Y L T . 29882 TTC F I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-1_PPS_1 (29046 29291) (frame '2'; 243 bp, 81 residues) 1 VVTEFRDSIL FKRSMTARLA CEGPSCHSVA KFRESISVPK FSESKCFGTR PPRRSVEGSV 61 DPDSYYQNKL YFSKRLNRSL Q- >C08HBa0027D09.1+_PGL-3_AGS-1_PPS_2 (29651 29845) (frame '1'; 192 bp, 64 residues) 1 FISYLPHALQ NFKWTNIPRT KLTSLTKPHH PFHGRNLQQD LLTLHKCQVS NLSICVFFLP 61 TLSR- 3-phase translation of AGS-1 (-strand): . . . . . . 29884 GAATCGTTAGATAAAGTGAAATGCATTCAAGAAAAGCTTTTAGCGGCTCAAAGTAGGCAG E S L D K V K C I Q E K L L A A Q S R Q N R - I K - N A F K K S F - R L K V G R I V R - S E M H S R K A F S G S K - A . . . . . . 29824 AAAGAATACGCAGATTGAAAGGTTAGAGACTTGGCATTTATGGAGGGTGAGCAAGTCTTG K E Y A D - K V R D L A F M E G E Q V L K N T Q I E R L E T W H L W R V S K S C E R I R R L K G - R L G I Y G G - A S L . . . . . . 29764 CTGAAGGTTTCGCCCATGAAAGGGGTGATGTGGTTTGGTAAGCGAGGTAAGCTTAGTCCG L K V S P M K G V M W F G K R G K L S P - R F R P - K G - C G L V S E V S L V R A E G F A H E R G D V V W - A R - A - S . . . . . . 29704 AGGTATATTGGTCCATTTGAAGTTCTGAAGCGCGTGGGGGAGGTAGCTTATGAATTAGCC R Y I G P F E V L K R V G E V A Y E L A G I L V H L K F - S A W G R - L M N - P E V Y W S I - S S E A R G G G S L - I S . . . . . . 29644 TTGCCCCCAGGACTGTCAGGAGTGCATCCGGTATTTCATGTGTCTATGTTGAAAAGATAC L P P G L S G V H P V F H V S M L K R Y C P Q D C Q E C I R Y F M C L C - K D T L A P R T V R S A S G I S C V Y V E K I . . . . . . 29584 CATGGGGATGGAAACTACATCATTCGTTGGGATTCAGTTCTGCTTGATGAGAATTTGTCT H G D G N Y I I R W D S V L L D E N L S M G M E T T S F V G I Q F C L M R I C L P W G W K L H H S L G F S S A - - E F V . . . . . . 29524 TATGAGGAGGAGCCTGTTGCTATCTTAGATAGAGAAGTCCGCAAGTTGAGGTCAAGGGAG Y E E E P V A I L D R E V R K L R S R E M R R S L L L S - I E K S A S - G Q G R L - G G A C C Y L R - R S P Q V E V K G . . . . . . 29464 ATTGCATCAATCAAGGTTCAGTGGAAGAATCGACCAGTTGAAGAGTCCACCTGGGAGAAG I A S I K V Q W K N R P V E E S T W E K L H Q S R F S G R I D Q L K S P P G R R D C I N Q G S V E E S T S - R V H L G E . . . . . . 29404 GAGGTTGATATGCAAAAAAAATATCCACACCTTTTTACAGACTCAGGTACTCTTTCTCGC E V D M Q K K Y P H L F T D S G T L S R R L I C K K N I H T F L Q T Q V L F L A G G - Y A K K I S T P F Y R L R Y S F S . . . . . . 29344 CCTTGTTTTTCTTCCGGTGATCGTTCGAGGACGAACGATGGGTAAATTGGTATTTATTGT P C F S S G D R S R T N D G - I G I Y C L V F L P V I V R G R T M G K L V F I V P L F F F R - S F E D E R W V N W Y L L . . . . . . 29284 AACGACCTGTTTAGTCGTTTTGAGAAGTAGAGTTTATTCTGGTAATAACTGTCTGGGTCG N D L F S R F E K - S L F W - - L S G S T T C L V V L R S R V Y S G N N C L G R - R P V - S F - E V E F I L V I T V W V . . . . . . 29224 ACGGATCCCTCGACGGACCGTCGAGGGGGTCTCGTTCCAAAACACTTAGATTCTGAAAAT T D P S T D R R G G L V P K H L D S E N R I P R R T V E G V S F Q N T - I L K I D G S L D G P S R G S R S K T L R F - K . . . . . . 29164 TTGGGTACTGAGATCGACTCTCTGAACTTTGCGACAGAATGGCAGGACGGACCTTCGCAG L G T E I D S L N F A T E W Q D G P S Q W V L R S T L - T L R Q N G R T D L R R F G Y - D R L S E L C D R M A G R T F A . . . . . . 29104 GCAAGACGGGCCGTCATAGACCTCTTAAATAGAATTGAGTCTCTGAACTCTGTGACGACT A R R A V I D L L N R I E S L N S V T T Q D G P S - T S - I E L S L - T L - R L G K T G R H R P L K - N - V S E L C D D . . . . . . 29044 CAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGACTGCGTAATCCTGACTGGG Q Q D G P S Q A R R A V T D C V I L T G S R T D R R R H D G P S Q T A - S - L G S A G R T V A G T T G R H R L R N P D W . . . . . . 28984 TCGGATTTCTGTTAAAAGTTTTTAATGAGCGTTTTGGACTATTCCTGCTTATAATTATAA S D F C - K F L M S V L D Y S C L - L - R I S V K S F - - A F W T I P A Y N Y K V G F L L K V F N E R F G L F L L I I I . . . . . . 28924 AGTTAGTGGGTTAATGTTAATAATTCAATTACTTGAGGGTTAAAGGAGACAACCTTGGAA S - W V N V N N S I T - G L K E T T L E V S G L M L I I Q L L E G - R R Q P W N K L V G - C - - F N Y L R V K G D N L G . 28864 TAA - I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-3_AGS-1_PPS_1 (29806 29300) (frame '1'; 504 bp, 168 residues) 1 KVRDLAFMEG EQVLLKVSPM KGVMWFGKRG KLSPRYIGPF EVLKRVGEVA YELALPPGLS 61 GVHPVFHVSM LKRYHGDGNY IIRWDSVLLD ENLSYEEEPV AILDREVRKL RSREIASIKV 121 QWKNRPVEES TWEKEVDMQK KYPHLFTDSG TLSRPCFSSG DRSRTNDG- >C08HBa0027D09.1-_PGL-3_AGS-1_PPS_2 (29236 28970) (frame '1'; 264 bp, 88 residues) 1 LSGSTDPSTD RRGGLVPKHL DSENLGTEID SLNFATEWQD GPSQARRAVI DLLNRIESLN 61 SVTTQQDGPS QARRAVTDCV ILTGSDFC- AGS-2 (30167 31198) SCR (e 0.893) Exon 1 30167 31198 (1032 n); score: 0.893 PGS (30167 30708) SGN-E353207+ PGS (30197 30495) SGN-E578131+ PGS (30612 31198) SGN-E352950+ PGS (30612 31198) SGN-E357100+ PGS (30612 31163) SGN-E352647+ 3-phase translation of AGS-2 (+strand): . . . . . . 30167 TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTTCCTCTATCTGATATGATG S A C N V F Q N L E V N C V P L S D M M Q H A M F S K T - K - T A F L Y L I - W S M Q C F P K L R S K L R S S I - Y D . . . . . . 30227 GAAAGTGGAACTCCATGCAATTGAACAATTTCTGAGACGTAAAGTTTGGCTAACTTCTCT E S G T P C N - T I S E T - S L A N F S K V E L H A I E Q F L R R K V W L T S L G K W N S M Q L N N F - D V K F G - L L . . . . . . 30287 GCATTGTAAGTCACCTTAACCGGAATGAAGTGAGTAGACTTAGTTAACCTATCAACAATT A L - V T L T G M K - V D L V N L S T I H C K S P - P E - S E - T - L T Y Q Q L C I V S H L N R N E V S R L S - P I N N . . . . . . 30347 ACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCA T Q M E S Y L P I V F G R P T T K S I A P K W S H T Y P L S L E D Q P R S P L Q Y P N G V I L T H C L W K T N H E V H C . . . . . . 30407 ATTCTCTCCCACTTCCATTAAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGG I L S H F H - G M G I L - S V P P G L W F S P T S I K E W A F S E V S L Q A S G N S L P L P L R N G H S L K C P S R P L . . . . . . 30467 TGTTCATACTTTACCTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCGCCC C S Y F T C - Q F G H - A T K S T M S P V H T L P A D N S G I E Q Q N Q Q C R P V F I L Y L L T I R A L S N K I N N V A . . . . . . 30527 TTCATCCTACTCCACCAGAAATGTTGCTTTAGGTCGCGATACATCTTGGTTGCACCAGGA F I L L H Q K C C F R S R Y I L V A P G S S Y S T R N V A L G R D T S W L H Q D L H P T P P E M L L - V A I H L G C T R . . . . . . 30587 TGTATAGAATACCTTGAACTATGAGCCTCCGTAAGAATAGTGTGAATCAAATAATCTATA C I E Y L E L - A S V R I V - I K - S I V - N T L N Y E P P - E - C E S N N L Y M Y R I P - T M S L R K N S V N Q I I Y . . . . . . 30647 CGGGGCATACATACCCTTCCCTTAATTCTCAAAATGCCTACCTCATCGATTTTTGCTTCT R G I H T L P L I L K M P T S S I F A S G A Y I P F P - F S K C L P H R F L L L T G H T Y P S L N S Q N A Y L I D F C F . . . . . . 30707 TTAGCCTCTCCACGTTATGCCTTATCTCGAATCCGAATCAGCTTCTCATCATTAAACTGC L A S P R Y A L S R I R I S F S S L N C - P L H V M P Y L E S E S A S H H - T A F S L S T L C L I S N P N Q L L I I K L . . . . . . 30767 TTTTCCTTAATCTTGTTAAGAAAGGAAGATCTTGCCTCCAAACAAGCCAAAAATCCTCCC F S L I L L R K E D L A S K Q A K N P P F P - S C - E R K I L P P N K P K I L P L F L N L V K K G R S C L Q T S Q K S S . . . . . . 30827 TTCTCATCTACTTCTAGCCTCATAAAGTTATTAGCCAGAGTCTGAACTTCTCTAGCCAAT F S S T S S L I K L L A R V - T S L A N S H L L L A S - S Y - P E S E L L - P M L L I Y F - P H K V I S Q S L N F S S Q . . . . . . 30887 GGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTACCTTTCTACTTAAA G R L E T C K - A R L P M L P T F L L K G V - K P A S E L D F P C S L P F Y L K W A S R N L Q V S - T S H A P Y L S T - . . . . . . 30947 GCATCTGCCACAGCGCTAGCTTTTCCTGGGTGGTACAAAATAGTGATATCGTAGTCCTTC A S A T A L A F P G W Y K I V I S - S F H L P Q R - L F L G G T K - - Y R S P S S I C H S A S F S W V V Q N S D I V V L . . . . . . 31007 AGTAGTTCCATCCATCTCATCTGTCTCAAATTCAAATCTTTCTGATTAAAGACATACTGT S S S I H L I C L K F K S F - L K T Y C V V P S I S S V S N S N L S D - R H T V Q - F H P S H L S Q I Q I F L I K D I L . . . . . . 31067 AAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGC K L R - S V - T S H L T P Y R - C L H C N Y D D P Y R L H T - P H I D N V S I A - T T M I R I D F T L N P I - I M S P L . . . . . . 31127 TTTAATGAAAATACTACCACAGCCAACTCCAAATCATCGGTCGGATAATTACGTTCGTGC F N E N T T T A N S K S S V G - L R S C L M K I L P Q P T P N H R S D N Y V R A L - - K Y Y H S Q L Q I I G R I I T F V . . 31187 ACCTTTAATTGC T F N C P L I H L - L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-2_PPS_1 (30330 30593) (frame '2'; 261 bp, 87 residues) 1 LTYQQLPKWS HTYPLSLEDQ PRSPLQFSPT SIKEWAFSEV SLQASGVHTL PADNSGIEQQ 61 NQQCRPSSYS TRNVALGRDT SWLHQDV- >C08HBa0027D09.1+_PGL-3_AGS-2_PPS_2 (30604 30843) (frame '0'; 237 bp, 79 residues) 1 TMSLRKNSVN QIIYTGHTYP SLNSQNAYLI DFCFFSLSTL CLISNPNQLL IIKLLFLNLV 61 KKGRSCLQTS QKSSLLIYF- 3-phase translation of AGS-2 (-strand): . . . . . . 31198 GCAATTAAAGGTGCACGAACGTAATTATCCGACCGATGATTTGGAGTTGGCTGTGGTAGT A I K G A R T - L S D R - F G V G C G S Q L K V H E R N Y P T D D L E L A V V V N - R C T N V I I R P M I W S W L W - . . . . . . 31138 ATTTTCATTAAAGCAATGGAGACATTATCTATATGGGGTTAAGTGTGAAGTCTATACGGA I F I K A M E T L S I W G - V - S L Y G F S L K Q W R H Y L Y G V K C E V Y T D Y F H - S N G D I I Y M G L S V K S I R . . . . . . 31078 TCATCGTAGTTTACAGTATGTCTTTAATCAGAAAGATTTGAATTTGAGACAGATGAGATG S S - F T V C L - S E R F E F E T D E M H R S L Q Y V F N Q K D L N L R Q M R W I I V V Y S M S L I R K I - I - D R - D . . . . . . 31018 GATGGAACTACTGAAGGACTACGATATCACTATTTTGTACCACCCAGGAAAAGCTAGCGC D G T T E G L R Y H Y F V P P R K S - R M E L L K D Y D I T I L Y H P G K A S A G W N Y - R T T I S L F C T T Q E K L A . . . . . . 30958 TGTGGCAGATGCTTTAAGTAGAAAGGTAGGGAGCATGGGAAGTCTAGCTCACTTGCAGGT C G R C F K - K G R E H G K S S S L A G V A D A L S R K V G S M G S L A H L Q V L W Q M L - V E R - G A W E V - L T C R . . . . . . 30898 TTCTAGACGCCCATTGGCTAGAGAAGTTCAGACTCTGGCTAATAACTTTATGAGGCTAGA F - T P I G - R S S D S G - - L Y E A R S R R P L A R E V Q T L A N N F M R L E F L D A H W L E K F R L W L I T L - G - . . . . . . 30838 AGTAGATGAGAAGGGAGGATTTTTGGCTTGTTTGGAGGCAAGATCTTCCTTTCTTAACAA S R - E G R I F G L F G G K I F L S - Q V D E K G G F L A C L E A R S S F L N K K - M R R E D F W L V W R Q D L P F L T . . . . . . 30778 GATTAAGGAAAAGCAGTTTAATGATGAGAAGCTGATTCGGATTCGAGATAAGGCATAACG D - G K A V - - - E A D S D S R - G I T I K E K Q F N D E K L I R I R D K A - R R L R K S S L M M R S - F G F E I R H N . . . . . . 30718 TGGAGAGGCTAAAGAAGCAAAAATCGATGAGGTAGGCATTTTGAGAATTAAGGGAAGGGT W R G - R S K N R - G R H F E N - G K G G E A K E A K I D E V G I L R I K G R V V E R L K K Q K S M R - A F - E L R E G . . . . . . 30658 ATGTATGCCCCGTATAGATTATTTGATTCACACTATTCTTACGGAGGCTCATAGTTCAAG M Y A P Y R L F D S H Y S Y G G S - F K C M P R I D Y L I H T I L T E A H S S R Y V C P V - I I - F T L F L R R L I V Q . . . . . . 30598 GTATTCTATACATCCTGGTGCAACCAAGATGTATCGCGACCTAAAGCAACATTTCTGGTG V F Y T S W C N Q D V S R P K A T F L V Y S I H P G A T K M Y R D L K Q H F W W G I L Y I L V Q P R C I A T - S N I S G . . . . . . 30538 GAGTAGGATGAAGGGCGACATTGTTGATTTTGTTGCTCAATGCCCGAATTGTCAGCAGGT E - D E G R H C - F C C S M P E L S A G S R M K G D I V D F V A Q C P N C Q Q V G V G - R A T L L I L L L N A R I V S R . . . . . . 30478 AAAGTATGAACACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTTAATGGAA K V - T P E A W R D T S E N A H S L M E K Y E H Q R P G G T L Q R M P I P - W K - S M N T R G L E G H F R E C P F L N G . . . . . . 30418 GTGGGAGAGAATTGCAATGGACTTCGTGGTTGGTCTTCCAAAGACAATGGGTAAGTATGA V G E N C N G L R G W S S K D N G - V - W E R I A M D F V V G L P K T M G K Y D S G R E L Q W T S W L V F Q R Q W V S M . . . . . . 30358 CTCCATTTGGGTAATTGTTGATAGGTTAACTAAGTCTACTCACTTCATTCCGGTTAAGGT L H L G N C - - V N - V Y S L H S G - G S I W V I V D R L T K S T H F I P V K V T P F G - L L I G - L S L L T S F R L R . . . . . . 30298 GACTTACAATGCAGAGAAGTTAGCCAAACTTTACGTCTCAGAAATTGTTCAATTGCATGG D L Q C R E V S Q T L R L R N C S I A W T Y N A E K L A K L Y V S E I V Q L H G - L T M Q R S - P N F T S Q K L F N C M . . . . . . 30238 AGTTCCACTTTCCATCATATCAGATAGAGGAACGCAGTTTACTTCTAAGTTTTGGAAAAC S S T F H H I R - R N A V Y F - V L E N V P L S I I S D R G T Q F T S K F W K T E F H F P S Y Q I E E R S L L L S F G K . . 30178 ATTGCATGCTGA I A C - L H A H C M L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-3_AGS-2_PPS_1 (31197 30721) (frame '2'; 474 bp, 158 residues) 1 QLKVHERNYP TDDLELAVVV FSLKQWRHYL YGVKCEVYTD HRSLQYVFNQ KDLNLRQMRW 61 MELLKDYDIT ILYHPGKASA VADALSRKVG SMGSLAHLQV SRRPLAREVQ TLANNFMRLE 121 VDEKGGFLAC LEARSSFLNK IKEKQFNDEK LIRIRDKA- >C08HBa0027D09.1-_PGL-3_AGS-2_PPS_2 (30720 30424) (frame '2'; 294 bp, 98 residues) 1 RGEAKEAKID EVGILRIKGR VCMPRIDYLI HTILTEAHSS RYSIHPGATK MYRDLKQHFW 61 WSRMKGDIVD FVAQCPNCQQ VKYEHQRPGG TLQRMPIP- >C08HBa0027D09.1-_PGL-3_AGS-2_PPS_3 (30423 30169) (frame '2'; 255 bp, 85 residues) 1 WKWERIAMDF VVGLPKTMGK YDSIWVIVDR LTKSTHFIPV KVTYNAEKLA KLYVSEIVQL 61 HGVPLSIISD RGTQFTSKFW KTLHA AGS-3 (31427 33061,33098 34168) SCR (e 0.877 d 0.000 a 0.000,e 0.826) Exon 1 31427 33061 (1635 n); score: 0.877 Intron 1 33062 33097 ( 36 n); Pd: 0.000 Pa: 0.000 Exon 2 33098 34168 (1071 n); score: 0.826 PGS (31427 32137) SGN-E379315+ PGS (31427 32021) SGN-E375319+ PGS (31427 31951) SGN-E204434+ PGS (31497 32174) SGN-E368762+ PGS (31497 31855) SGN-E240817+ PGS (31810 31961) SGN-E578078+ PGS (31946 32602) SGN-E355232+ PGS (32018 32775) SGN-E355244+ PGS (32018 32674) SGN-E351414+ PGS (32058 32717) SGN-E352117- PGS (32242 32783) SGN-E355026+ PGS (32265 32648) SGN-E242765+ PGS (32417 32747) SGN-E352716+ PGS (32624 33061,33098 33218) SGN-E244046+ PGS (32628 33061,33098 33427) SGN-E214046+ PGS (32673 33061,33098 33236) SGN-E577713+ PGS (32784 33061,33098 33516) SGN-E356209+ PGS (33186 33886) SGN-E349404+ PGS (33186 33858) SGN-E351625+ PGS (33186 33793) SGN-E357065+ PGS (33381 34099) SGN-E356614+ PGS (33384 34047) SGN-E352401+ PGS (33551 34104) SGN-E329287- PGS (33739 34168) SGN-E352180+ 3-phase translation of AGS-3 (+strand): . . . . . . 31427 AATCCCTTGACAAATCGACGGTAGTAGATAGCTAAACCAACAAAGCTCCTTACCTCTGTA N P L T N R R - - I A K P T K L L T S V I P - Q I D G S R - L N Q Q S S L P L - S L D K S T V V D S - T N K A P Y L C . . . . . . 31487 ACATTAGTAGGTCTTACCCAACTCTTCACTGCTTCGATCTTAGTAGGATCCACCATCACT T L V G L T Q L F T A S I L V G S T I T H - - V L P N S S L L R S - - D P P S L N I S R S Y P T L H C F D L S R I H H H . . . . . . 31547 CCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGAATCTAGCCAAAACTCACACTTG P S L E T T C P K K D T E S S Q N S H L H P - K P H A P R R T L N L A K T H T W S I L R N H M P Q E G H - I - P K L T L . . . . . . 31607 GAGAATTTGGCATAGAGCTTTTTCTCCCTCAACATTTCCAATACAATCCTCAAGTGCTCC E N L A - S F F S L N I S N T I L K C S R I W H R A F S P S T F P I Q S S S A P G E F G I E L F L P Q H F Q Y N P Q V L . . . . . . 31667 TCATGTTCTTTCCTGCTCTTTGAGTATACCAATATATCATCTATGAATACAATGACAAAG S C S F L L F E Y T N I S S M N T M T K H V L S C S L S I P I Y H L - I Q - Q R L M F F P A L - V Y Q Y I I Y E Y N D K . . . . . . 31727 AGATCTAGATAGGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCGGGGGCATTC R S R - G L K I P F I K L M K A A G A F D L D R A - K S H S S S S - K Q R G H S E I - I G L K N P I H Q A H E S S G G I . . . . . . 31787 GTAAGCCCAAAAGACATTACTAAGAACTCATAATGTCCATATCTGGTTCGAAAAGCAGTC V S P K D I T K N S - C P Y L V R K A V - A Q K T L L R T H N V H I W F E K Q S R K P K R H Y - E L I M S I S G S K S S . . . . . . 31847 TTGGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAATTGTTTTTT L G T S V A H I F N - - - P D L K L F F W A H P L P I F S I D D N Q I S N C F L L G H I R C P Y F Q L M I T R S Q I V F . . . . . . 31907 GAGAAGGTACAAGCACCTTGTAACTTATCGAACAAATCATCGATGCGAGGAAGAGGATAC E K V Q A P C N L S N K S S M R G R G Y R R Y K H L V T Y R T N H R C E E E D T - E G T S T L - L I E Q I I D A R K R I . . . . . . 31967 CTGTTCTTAATAGTTACCTTATTCAGTTGCCTGTAGTCTATGCACATCCTAAAACTTCCA L F L I V T L F S C L - S M H I L K L P C S - - L P Y S V A C S L C T S - N F H P V L N S Y L I Q L P V V Y A H P K T S . . . . . . 32027 TCCTTCTTCTTCACAAACAAAACGGGAGCACCCCTTAGGGATGCACTTGGTCTAATAAAG S F F F T N K T G A P L R D A L G L I K P S S S Q T K R E H P L G M H L V - - S I L L L H K Q N G S T P - G C T W S N K . . . . . . 32087 CCTTTTCCTAACAATTCTTGAAGTTGGCCTTTACCTCTCTTAACTCAGCGGGAGCCATTC P F P N N S - S W P L P L L T Q R E P F L F L T I L E V G L Y L S - L S G S H S A F S - Q F L K L A F T S L N S A G A I . . . . . . 32147 TATAAGGGGGTATGGAAATGAGGCAAGTACCCGGCTCCAGATCAATGCAAAAGTCAATAT Y K G V W K - G K Y P A P D Q C K S Q Y I R G Y G N E A S T R L Q I N A K V N I L - G G M E M R Q V P G S R S M Q K S I . . . . . . 32207 ACCTATCCGGTGGCATACCAGGAAGGTCTGGAGGAAACACATCCAAAAACTCACGGACTA T Y P V A Y Q E G L E E T H P K T H G L P I R W H T R K V W R K H I Q K L T D Y Y L S G G I P G R S G G N T S K N S R T . . . . . . 32267 TCGAAACCGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGGTGTGCCAAGAAAG S K P T Q L K V L G - Y H P - G V P R K R N R L N - R Y L G S I I P E V C Q E S I E T D S I E G T W V V S S L R C A K K . . . . . . 32327 CTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACGATACGAACCGGAT L N T L Y - P F S - H E E R R R Y E P D - T P F T N H S L S T K K G D D T N R I A K H P L L T I L L A R R K E T I R T G . . . . . . 32387 TGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCTAGGCTTGGCTAACGTCACAG W K C S H P P T L T D L S - A W L T S Q G S V V T L P H - R I C P R L G - R H S L E V - S P S H T N G S V L G L A N V T . . . . . . 32447 TTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTA F - H Y N P R L Q N L E K A K S Y P E L F S I T I Q D C K I W R K P S H T Q N Y V L A L Q S K I A K F G E S Q V I P R I . . . . . . 32507 CATCGAAGTCAACCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAG H R S Q P F L G - P S L H E Y C S P Q K I E V N H F - D N Q V Y M S I A P H K S T S K S T I S R I T K S T - V L L P T K . . . . . . 32567 TCAAAAGACAAGACCTATACACCTTTTCAACTATCAAAGACTCACCCACCGGAGTAGAAA S K D K T Y T P F Q L S K T H P P E - K Q K T R P I H L F N Y Q R L T H R S R N V K R Q D L Y T F S T I K D S P T G V E . . . . . . 32627 CACGAATAGGCATGTCAAGAAAATCACAATGTAAATCAAGACCAGTAGGAAATGAGGAAG H E - A C Q E N H N V N Q D Q - E M R K T N R H V K K I T M - I K T S R K - G R T R I G M S R K S Q C K S R P V G N E E . . . . . . 32687 ATACATAAGAAAATGTGGATCCAGGATCAAATAATACAGAAGCGATGTAATCACAAACCA I H K K M W I Q D Q I I Q K R C N H K P Y I R K C G S R I K - Y R S D V I T N Q D T - E N V D P G S N N T E A M - S Q T . . . . . . 32747 AAAGATTACCTGTGATAACAGCATCAGATGTCTCCGCTTCAGACCTCCCAGGGAAAGCAT K D Y L - - Q H Q M S P L Q T S Q G K H K I T C D N S I R C L R F R P P R E S I K R L P V I T A S D V S A S D L P G K A . . . . . . 32807 AACAATGGGCCCTATCACCTGTCTGCCCGTTGCCCCTACCATGTTGCGCTGCAGTGGTTC N N G P Y H L S A R C P Y H V A L Q W F T M G P I T C L P V A P T M L R C S G S - Q W A L S P V C P L P L P C C A A V V . . . . . . 32867 CAGTTTGCCTGCCACCCTGATTGATTTGGTGACCACCATTACCTCGGCCACCACGTTCTC Q F A C H P D - F G D H H Y L G H H V L S L P A T L I D L V T T I T S A T T F S P V C L P P - L I W - P P L P R P P R S . . . . . . 32927 CAGAATAGCGGCCTCTCCCATGACCACCTCTACCTCTGACTATTGGGGGTCTGTAACTCT Q N S G L S H D H L Y L - L L G V C N S R I A A S P M T T S T S D Y W G S V T L P E - R P L P - P P L P L T I G G L - L . . . . . . 32987 GTTTTGGACAACATCTCTTAATATGTCCAATTTCCCCACATCCATAACACTCTCTGGGTT V L D N I S - Y V Q F P H I H N T L W V F W T T S L N M S N F P T S I T L S G F C F G Q H L L I C P I S P H P - H S L G . . : . . . . 33047 CAAGCATAGGTCTCT : CAGAGAAATGTTGACCGGTCTGGGGTGGACCCCCAGCTACAGCCT Q A - V S : Q R N V D R S G V D P Q L Q P K H R S L : R E M L T G L G W T P S Y S L S S I G L : S E K C - P V W G G P P A T A . . . . . . 33143 GTAGTGAAGACTGAATTGATCGGGCTGGGTAACCTCCTGAACCCTGTCCTCTGGAGTAAG V V K T E L I G L G N L L N P V L W S K - - R L N - S G W V T S - T L S S G V R C S E D - I D R A G - P P E P C P L E - . . . . . . 33203 AACCATTAAACTCACCTCCCTTACGAAACTTTTTAAAGGTCAATGCCATGGTGAAGTCTT N H - T H L P Y E T F - R S M P W - S L T I K L T S L T K L F K G Q C H G E V F E P L N S P P L R N F L K V N A M V K S . . . . . . 33263 CTGGATTCACTCCCTCCACTTCTATCACAATATCTACCACTTCCTGAAAGGATTTTGCTG L D S L P P L L S Q Y L P L P E R I L L W I H S L H F Y H N I Y H F L K G F C C S G F T P S T S I T I S T T S - K D F A . . . . . . 33323 TAGCAGCTACCTGTAAGGCTGAAATCCGCAAATTTGACCTCAACCCCTTCACAAAATGGC - Q L P V R L K S A N L T S T P S Q N G S S Y L - G - N P Q I - P Q P L H K M A V A A T C K A E I R K F D L N P F T K W . . . . . . 33383 GAATCCGCTCTTGTGGACTGAAGCAAAGCTGGGTGGCATATCTGGATAGTGCACGAAACC E S A L V D - S K A G W H I W I V H E T N P L L W T E A K L G G I S G - C T K P R I R S C G L K Q S W V A Y L D S A R N . . . . . . 33443 TAGCCTCATAAGCAGTAACTGACATCCTGCCTTGCTCTAGGCTTAGAAACTAATCTCTCC - P H K Q - L T S C L A L G L E T N L S S L I S S N - H P A L L - A - K L I S P L A S - A V T D I L P C S R L R N - S L . . . . . . 33503 TCCTATCCCTCAAAGTACGGGGTATATACTTCTCCATAAATAAACTAGAGAATGATGCCC S Y P S K Y G V Y T S P - I N - R M M P P I P Q S T G Y I L L H K - T R E - C P L L S L K V R G I Y F S I N K L E N D A . . . . . . 33563 AAGTCATGGGTGGTGCCTGTGCTGGTTGACACTCAACATATGACCGCCACCACATTTTGG K S W V V P V L V D T Q H M T A T T F W S H G W C L C W L T L N I - P P P H F G Q V M G G A C A G - H S T Y D R H H I L . . . . . . 33623 CATTTCCCTGAAACTGATAGGTTACGAACTCAACACCGAATGGTTCCACTATGCCCATCT H F P E T D R L R T Q H R M V P L C P S I S L K L I G Y E L N T E W F H Y A H L A F P - N - - V T N S T P N G S T M P I . . . . . . 33683 TATGTAGCAACTCATGACAATCAACCACAAAATCATAGGCATCCTCAGATTCAACACCCT Y V A T H D N Q P Q N H R H P Q I Q H P M - Q L M T I N H K I I G I L R F N T L L C S N S - Q S T T K S - A S S D S T P . . . . . . 33743 TGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTTTCA - R L E V S I S R T Y - K V H A D H F S E D W R F Q F Q E L T E K F M L I T F H L K T G G F N F K N L L K S S C - S L F . . . . . . 33803 TTATAGGCCCTGTAGTCAACCGAGGAAACGTTCCTATTTCCATTGAAGCATCCATGCGGG L - A L - S T E E T F L F P L K H P C G Y R P C S Q P R K R S Y F H - S I H A G I I G P V V N R G N V P I S I E A S M R . . . . . . 33863 GATCCCCAGCAGCGGCACGTCGTACTCCCGTAACCTGGGGTGCTGGTGCAGAAAACACTG D P Q Q R H V V L P - P G V L V Q K T L I P S S G T S Y S R N L G C W C R K H W G S P A A A R R T P V T W G A G A E N T . . . . . . 33923 GAGGTGTCTGACCTTGATCAGATAACCCACTAAGATAAGCAAGAACCTGATTAATCATCT E V S D L D Q I T H - D K Q E P D - S S R C L T L I R - P T K I S K N L I N H L G G V - P - S D N P L R - A R T - L I I . . . . . . 33983 CTGGGGTAGGTTGGGGTGGTAACTCCTCACTCCGCACTTGTTCATTCTCCCCTTCCTCAC L G - V G V V T P H S A L V H S P L P H W G R L G W - L L T P H L F I L P F L T S G V G W G G N S S L R T C S F S P S S . . . . . . 34043 CCTCTCTCAAAACTTCCTCAGTCGGCTGAGGAGTCACCGCCCTAGTACTAGATGGGCCAG P L S K L P Q S A E E S P P - Y - M G Q L S Q N F L S R L R S H R P S T R W A R P S L K T S S V G - G V T A L V L D G P . . . . . . 34103 GTGCTTGTCCTCTTCCTCTAGAGGACGTCCTCCCGCGACCTCTACCACGGCCTCTTGCAA V L V L F L - R T S S R D L Y H G L L Q C L S S S S R G R P P A T S T T A S C N G A C P L P L E D V L P R P L P R P L A . 34163 CTGCTC L L C T A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-3_PPS_1 (32721 33061,33098 33146) (frame '2'; 387 bp, 129 residues) 1 YRSDVITNQK ITCDNSIRCL RFRPPRESIT MGPITCLPVA PTMLRCSGSS LPATLIDLVT 61 TITSATTFSR IAASPMTTST SDYWGSVTLF WTTSLNMSNF PTSITLSGFK HRSLREMLTG 121 LGWTPSYSL- >C08HBa0027D09.1+_PGL-3_AGS-3_PPS_2 (32152 32397) (frame '0'; 243 bp, 81 residues) 1 GGMEMRQVPG SRSMQKSIYL SGGIPGRSGG NTSKNSRTIE TDSIEGTWVV SSLRCAKKAK 61 HPLLTILLAR RKETIRTGLE V- >C08HBa0027D09.1+_PGL-3_AGS-3_PPS_3 (33551 33745) (frame '1'; 192 bp, 64 residues) 1 RMMPKSWVVP VLVDTQHMTA TTFWHFPETD RLRTQHRMVP LCPSYVATHD NQPQNHRHPQ 61 IQHP- AGS-4 (31998 32526,33307 33477) SCR (e 0.884 d 0.000 a 0.000,e 0.883) Exon 1 31998 32526 ( 529 n); score: 0.884 Intron 1 32527 33306 ( 780 n); Pd: 0.000 Pa: 0.000 Exon 2 33307 33477 ( 171 n); score: 0.883 PGS (31998 32526,33307 33477) SGN-E353359+ 3-phase translation of AGS-4 (+strand): . . . . . . 31998 TGTAGTCTATGCACATCCTAAAACTTCCATCCTTCTTCTTCACAAACAAAACGGGAGCAC C S L C T S - N F H P S S S Q T K R E H V V Y A H P K T S I L L L H K Q N G S T - S M H I L K L P S F F F T N K T G A . . . . . . 32058 CCCTTAGGGATGCACTTGGTCTAATAAAGCCTTTTCCTAACAATTCTTGAAGTTGGCCTT P L G M H L V - - S L F L T I L E V G L P - G C T W S N K A F S - Q F L K L A F P L R D A L G L I K P F P N N S - S W P . . . . . . 32118 TACCTCTCTTAACTCAGCGGGAGCCATTCTATAAGGGGGTATGGAAATGAGGCAAGTACC Y L S - L S G S H S I R G Y G N E A S T T S L N S A G A I L - G G M E M R Q V P L P L L T Q R E P F Y K G V W K - G K Y . . . . . . 32178 CGGCTCCAGATCAATGCAAAAGTCAATATACCTATCCGGTGGCATACCAGGAAGGTCTGG R L Q I N A K V N I P I R W H T R K V W G S R S M Q K S I Y L S G G I P G R S G P A P D Q C K S Q Y T Y P V A Y Q E G L . . . . . . 32238 AGGAAACACATCCAAAAACTCACGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGT R K H I Q K L T D Y R N R L N - R Y L G G N T S K N S R T I E T D S I E G T W V E E T H P K T H G L S K P T Q L K V L G . . . . . . 32298 AGTATCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGC S I I P E V C Q E S - T P F T N H S L S V S S L R C A K K A K H P L L T I L L A - Y H P - G V P R K L N T L Y - P F S - . . . . . . 32358 ACGAAGAAAGGAGACGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGG T K K G D D T N R I G S V V T L P H - R R R K E T I R T G L E V - S P S H T N G H E E R R R Y E P D W K C S H P P T L T . . . . . . 32418 ATCTGTCCTAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATT I C P R L G - R H S F S I T I Q D C K I S V L G L A N V T V L A L Q S K I A K F D L S - A W L T S Q F - H Y N P R L Q N . . . . . : . 32478 TGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCT : TGAAAGGATTT W R K P S H T Q N Y I E V N H F : L K G F G E S Q V I P R I T S K S T I S : - K D F L E K A K S Y P E L H R S Q P F L : E R I . . . . . . 33318 TGCTGTAGCAGCTACCTGTAAGGCTGAAATCCGCAAATTTGACCTCAACCCCTTCACAAA C C S S Y L - G - N P Q I - P Q P L H K A V A A T C K A E I R K F D L N P F T K L L - Q L P V R L K S A N L T S T P S Q . . . . . . 33378 ATGGCGAATCCGCTCTTGTGGACTGAAGCAAAGCTGGGTGGCATATCTGGATAGTGCACG M A N P L L W T E A K L G G I S G - C T W R I R S C G L K Q S W V A Y L D S A R N G E S A L V D - S K A G W H I W I V H . . . . 33438 AAACCTAGCCTCATAAGCAGTAACTGACATCCTGCCTTGC K P S L I S S N - H P A L N L A S - A V T D I L P C E T - P H K Q - L T S C L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-4_PPS_1 (32152 32397) (frame '2'; 243 bp, 81 residues) 1 GGMEMRQVPG SRSMQKSIYL SGGIPGRSGG NTSKNSRTIE TDSIEGTWVV SSLRCAKKAK 61 HPLLTILLAR RKETIRTGLE V- AGS-5 (33232 33252,34245 34271,37942 37974,38977 39041,39324 39863) SCR (e 0.714 d 0.643 a 0.000,e 0.704 d 0.598 a 0.697,e 0.682 d 0.000 a 0.000,e 0.631 d 0.000 a 0.000,e 0.878) Exon 1 33232 33252 ( 21 n); score: 0.714 Intron 1 33253 34244 ( 992 n); Pd: 0.643 Pa: 0.000 Exon 2 34245 34271 ( 27 n); score: 0.704 Intron 2 34272 37941 (3670 n); Pd: 0.598 Pa: 0.697 Exon 3 37942 37974 ( 33 n); score: 0.682 Intron 3 37975 38976 (1002 n); Pd: 0.000 Pa: 0.000 Exon 4 38977 39041 ( 65 n); score: 0.631 Intron 4 39042 39323 ( 282 n); Pd: 0.000 Pa: 0.000 Exon 5 39324 39863 ( 540 n); score: 0.878 PGS (33232 33252,34245 34271,37942 37974,38977 39041,39324 39479) SGN-E578078- PGS (39339 39863) SGN-E204434- 3-phase translation of AGS-5 (+strand): . . . : . . : . 33232 TTTTTAAAGGTCAATGCCATG : TCTAGTTCTAACCATCTGCGAAATAGA : TCCACAAGAGCG F L K V N A M : S S S N H L R N R : S T R A F - R S M P C : L V L T I C E I D : P Q E R F K G Q C H : V - F - P S A K - : I H K S . . . : . . . 37954 GATTCACCATTTTGTGAAGGG : TCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAG D S P F C E G : S G M I L P K Y L Q L S Q I H H F V K G : Q G - Y Y P S T F N - V S G F T I L - R : V R D D T T Q V P S I E S . . . : . . . 39016 TTTCGATAGTCTGTGAGTTTCTAGAT : TATCCTCTTCCTCGTATCGATGATTTGTTCGATC F R - S V S F - I : I L F L V S M I C S I F D S L - V S R : L S S S S Y R - F V R S V S I V C E F L D : Y P L P R I D D L F D . . . . . . 39358 AGTTACAAGGTGCTTATACTTTCTCAAAAATTGACTTGAGATCTGGTTACCATCAATTGA S Y K V L I L S Q K L T - D L V T I N - V T R C L Y F L K N - L E I W L P S I E Q L Q G A Y T F S K I D L R S G Y H Q L . . . . . . 39418 AAATACGGGCAACGTATGTGCCCAAGACTGCTTTTCGGACCAGGTATAGGCATTATGAGT K Y G Q R M C P R L L F G P G I G I M S N T G N V C A Q D C F S D Q V - A L - V K I R A T Y V P K T A F R T R Y R H Y E . . . . . . 39478 TCTTAGTAATGTCTTTTGGGCTTACGAATGCCCCTGCTGCTTTCATGAGCTTGATGAATG S - - C L L G L R M P L L L S - A - - M L S N V F W A Y E C P C C F H E L D E W F L V M S F G L T N A P A A F M S L M N . . . . . . 39538 GGATTTTTAAGCCATATCTGGATCTCTTTGTCATCCTATTCATCGATGATATATTGGTAT G F L S H I W I S L S S Y S S M I Y W Y D F - A I S G S L C H P I H R - Y I G I G I F K P Y L D L F V I L F I D D I L V . . . . . . 39598 ACTCAAAGAGCAAGAAGGAACATGAGGAGCACTTGAGAATTGTATTGGAAACGTTGAGGG T Q R A R R N M R S T - E L Y W K R - G L K E Q E G T - G A L E N C I G N V E G Y S K S K K E H E E H L R I V L E T L R . . . . . . 39658 AGAAAAAGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATTCAGTGTCTTTCT R K S F M P N S P S V S F G - I Q C L S E K A L C Q I L Q V - V L A R F S V F L E K K L Y A K F S K C E F W L D S V S F . . . . . . 39718 TGGGACACGTGGTTTCTAAGGATGGAGTGATAGTGGATCCATCTAAGATTGAAATAGTGA W D T W F L R M E - - W I H L R L K - - G T R G F - G W S D S G S I - D - N S E L G H V V S K D G V I V D P S K I E I V . . . . . . 39778 GGAATTGGGTAAGACCTACTAATGTGTCAGAAGTAAGGAGATTCGTTGGTTTAGCTAGCT G I G - D L L M C Q K - G D S L V - L A E L G K T Y - C V R S K E I R W F S - L R N W V R P T N V S E V R R F V G L A S . . . 39838 ACTACCGCCGATTTGTCAAGGGGTTC T T A D L S R G L P P I C Q G V Y Y R R F V K G F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-5_PPS_1 (37971 37974,38977 39041,39324 39863) (frame '0'; 609 bp, 203 residues) 1 RVRDDTTQVP SIESVSIVCE FLDYPLPRID DLFDQLQGAY TFSKIDLRSG YHQLKIRATY 61 VPKTAFRTRY RHYEFLVMSF GLTNAPAAFM SLMNGIFKPY LDLFVILFID DILVYSKSKK 121 EHEEHLRIVL ETLREKKLYA KFSKCEFWLD SVSFLGHVVS KDGVIVDPSK IEIVRNWVRP 181 TNVSEVRRFV GLASYYRRFV KGF AGS-6 (34180 35240) SCR (e 0.838) Exon 1 34180 35240 (1061 n); score: 0.838 PGS (34180 34459) SGN-E355114- PGS (34215 34893) SGN-E392027+ PGS (34240 34934) SGN-E351546- PGS (34334 34934) SGN-E356696- PGS (34483 34879) SGN-E370357+ PGS (34655 34879) SGN-E373116+ PGS (34655 34879) SGN-E373117- PGS (34933 35240) SGN-E252199+ 3-phase translation of AGS-6 (+strand): . . . . . . 34180 ACAGCCCCAGTGGGTGGCTCAGACACATCTTGTCTTGCCGGTGTTGGCGTTGGCGCATTT T A P V G G S D T S C L A G V G V G A F Q P Q W V A Q T H L V L P V L A L A H L S P S G W L R H I L S C R C W R W R I . . . . . . 34240 GTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAGGATGGTCAGATACATATTTGTAT V A L V L T I C E I E - G W S D T Y L Y L L - F - P S A K - S E D G Q I H I C I C C S S S N H L R N R V R M V R Y I F V . . . . . . 34300 CACCTAGATACCAATTGGATCCAAGTAATAGCACGAAAGAAAGAAAGAATGAAATTTTCC H L D T N W I Q V I A R K K E R M K F S T - I P I G S K - - H E R K K E - N F P S P R Y Q L D P S N S T K E R K N E I F . . . . . . 34360 TAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTC - S L I A S Q R K V K A S P Y R S L R L K V L - P L K E K - R R P P T V P - D S L K S Y S L S K K S K G V P L P F L K T . . . . . . 34420 TACTCGACTCGTTCTTGTGTGATGAGACCAATGAACCTAATGCTCTGATACCAAGTTTGT Y S T R S C V M R P M N L M L - Y Q V C T R L V L V - - D Q - T - C S D T K F V L L D S F L C D E T N E P N A L I P S L . . . . . . 34480 CAGGACCCAAAACGAGCTGCGAGTGGCACCCACATTTATCCTTTTATGTGAGCGAACCAA Q D P K R A A S G T H I Y P F M - A N Q R T Q N E L R V A P T F I L L C E R T N S G P K T S C E W H P H L S F Y V S E P . . . . . . 34540 TCAATCTAAACCCAAAATCATTTACCAATAATTGAACCATAATAAAAAAAATACAATGCG S I - T Q N H L P I I E P - - K K Y N A Q S K P K I I Y Q - L N H N K K N T M R I N L N P K S F T N N - T I I K K I Q C . . . . . . 34600 GAAGACTTAAAACTCATTAATGAAAATAGATTAATAACTTCTAAAAACTCGATACTTATT E D L K L I N E N R L I T S K N S I L I K T - N S L M K I D - - L L K T R Y L L G R L K T H - - K - I N N F - K L D T Y . . . . . . 34660 ATTCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATCCTCAAATTACTAAATCTAA I P K I W K S S P Q E H L S S N Y - I - F P K S G S H H H K N I Y P Q I T K S K Y S Q N L E V I T T R T S I L K L L N L . . . . . . 34720 GAGTATCTAAGAAGCTAAAATAAATAAACAGCTAGTCCGTGCCAGAACTTCAAGGAATCA E Y L R S - N K - T A S P C Q N F K E S S I - E A K I N K Q L V R A R T S R N Q R V S K K L K - I N S - S V P E L Q G I . . . . . . 34780 AGACGTGAAGAAGAAGATCCAGTCCAAGCTAGAAACAATAGCTCACCCTGAATTCTGGTG R R E E E D P V Q A R N N S S P - I L V D V K K K I Q S K L E T I A H P E F W C K T - R R R S S P S - K Q - L T L N S G . . . . . . 34840 TGATGAAGACTGACTAGAGTTGAGGACGAGTTGAAGACGATGGCACGCTTACTGCACTCC - - R L T R V E D E L K T M A R L L H S D E D - L E L R T S - R R W H A Y C T P V M K T D - S - G R V E D D G T L T A L . . . . . . 34900 ACAAATAACAAGAAAAACAAATACAAGTAGGGGTGTAACGACTTGTTTAGTCGTTTTGAG T N N K K N K Y K - G C N D L F S R F E Q I T R K T N T S R G V T T C L V V L S H K - Q E K Q I Q V G V - R L V - S F - . . . . . . 34960 CAGCAGATTTTATTCTGGAAAAACTGTCTTGGTCGACGGATCCCACGACGGACCGTCATG Q Q I L F W K N C L G R R I P R R T V M S R F Y S G K T V L V D G S H D G P S W A A D F I L E K L S W S T D P T T D R H . . . . . . 35020 GGCATGACGGACCGTCGAGGGGTTCTCGTTCCAAAACACTTAGAATTTCTGAAATTTGGG G M T D R R G V L V P K H L E F L K F G A - R T V E G F S F Q N T - N F - N L G G H D G P S R G S R S K T L R I S E I W . . . . . . 35080 TATTGAAATCGACTCTCTGAACTTCGTGACGACATGGCAGGACGGACCATCGTGGGCACG Y - N R L S E L R D D M A G R T I V G T I E I D S L N F V T T W Q D G P S W A R V L K S T L - T S - R H G R T D H R G H . . . . . . 35140 ATGGACCGTCACAGACCTTTCAAAGAATTGAGGCTCTGAACTCTGTGACGGAAGCAGCAG M D R H R P F K E L R L - T L - R K Q Q W T V T D L S K N - G S E L C D G S S R D G P S Q T F Q R I E A L N S V T E A A . . . . . 35200 GACGGACCGTTTCAGGCATGACGGGCCGTCACAGACTGTGT D G P F Q A - R A V T D C T D R F R H D G P S Q T V G R T V S G M T G R H R L C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-6_PPS_1 (34182 34574) (frame '0'; 390 bp, 130 residues) 1 SPSGWLRHIL SCRCWRWRIC CSSSNHLRNR VRMVRYIFVS PRYQLDPSNS TKERKNEIFL 61 KSYSLSKKSK GVPLPFLKTL LDSFLCDETN EPNALIPSLS GPKTSCEWHP HLSFYVSEPI 121 NLNPKSFTNN - 3-phase translation of AGS-6 (-strand): . . . . . . 35240 ACACAGTCTGTGACGGCCCGTCATGCCTGAAACGGTCCGTCCTGCTGCTTCCGTCACAGA T Q S V T A R H A - N G P S C C F R H R H S L - R P V M P E T V R P A A S V T E T V C D G P S C L K R S V L L L P S Q . . . . . . 35180 GTTCAGAGCCTCAATTCTTTGAAAGGTCTGTGACGGTCCATCGTGCCCACGATGGTCCGT V Q S L N S L K G L - R S I V P T M V R F R A S I L - K V C D G P S C P R W S V S S E P Q F F E R S V T V H R A H D G P . . . . . . 35120 CCTGCCATGTCGTCACGAAGTTCAGAGAGTCGATTTCAATACCCAAATTTCAGAAATTCT P A M S S R S S E S R F Q Y P N F R N S L P C R H E V Q R V D F N T Q I S E I L S C H V V T K F R E S I S I P K F Q K F . . . . . . 35060 AAGTGTTTTGGAACGAGAACCCCTCGACGGTCCGTCATGCCCATGACGGTCCGTCGTGGG K C F G T R T P R R S V M P M T V R R G S V L E R E P L D G P S C P - R S V V G - V F W N E N P S T V R H A H D G P S W . . . . . . 35000 ATCCGTCGACCAAGACAGTTTTTCCAGAATAAAATCTGCTGCTCAAAACGACTAAACAAG I R R P R Q F F Q N K I C C S K R L N K S V D Q D S F S R I K S A A Q N D - T S D P S T K T V F P E - N L L L K T T K Q . . . . . . 34940 TCGTTACACCCCTACTTGTATTTGTTTTTCTTGTTATTTGTGGAGTGCAGTAAGCGTGCC S L H P Y L Y L F F L L F V E C S K R A R Y T P T C I C F S C Y L W S A V S V P V V T P L L V F V F L V I C G V Q - A C . . . . . . 34880 ATCGTCTTCAACTCGTCCTCAACTCTAGTCAGTCTTCATCACACCAGAATTCAGGGTGAG I V F N S S S T L V S L H H T R I Q G E S S S T R P Q L - S V F I T P E F R V S H R L Q L V L N S S Q S S S H Q N S G - . . . . . . 34820 CTATTGTTTCTAGCTTGGACTGGATCTTCTTCTTCACGTCTTGATTCCTTGAAGTTCTGG L L F L A W T G S S S S R L D S L K F W Y C F - L G L D L L L H V L I P - S S G A I V S S L D W I F F F T S - F L E V L . . . . . . 34760 CACGGACTAGCTGTTTATTTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAG H G L A V Y L F - L L R Y S - I - - F E T D - L F I Y F S F L D T L R F S N L R A R T S C L F I L A S - I L L D L V I - . . . . . . 34700 GATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGAATAATAAGTATCGAGTTTTTA D R C S C G D D F Q I L G I I S I E F L I D V L V V M T S R F W E - - V S S F - G - M F L W - - L P D F G N N K Y R V F . . . . . . 34640 GAAGTTATTAATCTATTTTCATTAATGAGTTTTAAGTCTTCCGCATTGTATTTTTTTTAT E V I N L F S L M S F K S S A L Y F F Y K L L I Y F H - - V L S L P H C I F F I R S Y - S I F I N E F - V F R I V F F L . . . . . . 34580 TATGGTTCAATTATTGGTAAATGATTTTGGGTTTAGATTGATTGGTTCGCTCACATAAAA Y G S I I G K - F W V - I D W F A H I K M V Q L L V N D F G F R L I G S L T - K L W F N Y W - M I L G L D - L V R S H K . . . . . . 34520 GGATAAATGTGGGTGCCACTCGCAGCTCGTTTTGGGTCCTGACAAACTTGGTATCAGAGC G - M W V P L A A R F G S - Q T W Y Q S D K C G C H S Q L V L G P D K L G I R A R I N V G A T R S S F W V L T N L V S E . . . . . . 34460 ATTAGGTTCATTGGTCTCATCACACAAGAACGAGTCGAGTAGAGTCTTAAGGAACGGTAG I R F I G L I T Q E R V E - S L K E R - L G S L V S S H K N E S S R V L R N G R H - V H W S H H T R T S R V E S - G T V . . . . . . 34400 GGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCATTCTTTCT G D A F T F L - E A I R L - E N F I L S G T P L L F F E R L - D F R K I S F F L G G R L Y F S L R G Y K T L G K F H S F . . . . . . 34340 TTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATATGTATCTGAC F F R A I T W I Q L V S R - Y K Y V S D S F V L L L G S N W Y L G D T N M Y L T F L S C Y Y L D P I G I - V I Q I C I - . . . . . . 34280 CATCCTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAAATGCGCCAACGCCAACA H P H S I S Q M V R T R A T N A P T P T I L T L F R R W L E L E Q Q M R Q R Q H P S S L Y F A D G - N - S N K C A N A N . . . . . 34220 CCGGCAAGACAAGATGTGTCTGAGCCACCCACTGGGGCTGT P A R Q D V S E P P T G A R Q D K M C L S H P L G L T G K T R C V - A T H W G C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-3_AGS-6_PPS_1 (35147 34734) (frame '1'; 411 bp, 137 residues) 1 RSIVPTMVRP AMSSRSSESR FQYPNFRNSK CFGTRTPRRS VMPMTVRRGI RRPRQFFQNK 61 ICCSKRLNKS LHPYLYLFFL LFVECSKRAI VFNSSSTLVS LHHTRIQGEL LFLAWTGSSS 121 SRLDSLKFWH GLAVYLF- AGS-7 (35531 35733,35778 37161) SCR (e 0.865 d 0.000 a 0.000,e 0.797) Exon 1 35531 35733 ( 203 n); score: 0.865 Intron 1 35734 35777 ( 44 n); Pd: 0.000 Pa: 0.000 Exon 2 35778 37161 (1384 n); score: 0.797 PGS (35531 35733,35778 36109) SGN-E347579+ PGS (36096 36694) SGN-E546506- PGS (36141 36550) SGN-E246710+ PGS (36377 37101) SGN-E351546+ PGS (36377 37027) SGN-E356696+ PGS (36377 36952) SGN-E356206+ PGS (36429 36694) SGN-E222578- PGS (36457 37161) SGN-E392027- PGS (36458 36857) SGN-E370357- PGS (36460 36696) SGN-E373117+ PGS (36460 36696) SGN-E373116- PGS (36490 36726) SGN-E216150- PGS (36505 36696) SGN-E298638+ PGS (36536 36687) SGN-E352844+ PGS (36536 36687) SGN-E368629+ PGS (36536 36684) SGN-E238551+ PGS (36875 37161) SGN-E355114+ 3-phase translation of AGS-7 (+strand): . . . . . . 35531 TTGCTTGCTTGATCACAATTCTTTGGTGGAGGTAGGTTATGGTTTTTATGCTATTCGTAG L L A - S Q F F G G G R L W F L C Y S - C L L D H N S L V E V G Y G F Y A I R S A C L I T I L W W R - V M V F M L F V . . . . . . 35591 TAAACTCTTAATAGCGAATGATATGTATTGGGTAGTGTTGTAAACCCTTCTATATGCTTA - T L N S E - Y V L G S V V N P S I C L K L L I A N D M Y W V V L - T L L Y A - V N S - - R M I C I G - C C K P F Y M L . . . . . . 35651 ATTGTGTGCTTGCATGATGTGTTTATATAATTGTGATAAAATAAGCATGATGAAGCTATT I V C L H D V F I - L - - N K H D E A I L C A C M M C L Y N C D K I S M M K L L N C V L A - C V Y I I V I K - A - - S Y . . . : . . . 35711 GAATCCTAAATCTTGAAAACCTC : TAAAGTAATGAGATTGATGATGCCTTGGTATAAGAGA E S - I L K T S : K V M R L M M P W Y K R N P K S - K P : L K - - D - - C L G I R E - I L N L E N L : - S N E I D D A L V - E . . . . . . 35815 AGTCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTGTAAAAGAAGGCTTGATG S L D E L K - - D - - C L G V K E G L M V L M N - S N E I D D A L V - K K A - - K S - - T K V M R L M M P W C K R R L D . . . . . . 35875 AATTAACAGAATGAGACTAGTGGAGCGGGTGTCACGAATCGACACGTAAAATTAGGGGAT N - Q N E T S G A G V T N R H V K L G D I N R M R L V E R V S R I D T - N - G I E L T E - D - W S G C H E S T R K I R G . . . . . . 35935 CGGGTGTCACGAAACGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGA R V S R N D T - N - G I G C H E P T R R G C H E T T R R I R G S G V T N R H V E S G V T K R H V E L G D R V S R T D T - . . . . . . 35995 ATTAGGGGATCAGGTGTCACGAACCAACACGTAGAATTAGGGGATCGGGTGTCACGGACC I R G S G V T N Q H V E L G D R V S R T L G D Q V S R T N T - N - G I G C H G P N - G I R C H E P T R R I R G S G V T D . . . . . . 36055 GACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGGAG D T - N - G I G C H E P T R R I R G S E T R R I R G S G V M N R H V E L G D R S R H V E L G D R V S - T D T - N - G I G . . . . . . 36115 TGTCACGTTCTGACATATAGTAGTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGGAA C H V L T Y S S R G A E C H V P T Q E E V T F - H I V V G E R S V T Y R H K R N V S R S D I - - - G S G V S R T D T R G . . . . . . 36175 TAAAGATAATGAGTCTTGAAATTATGTTAACAAATTCGAATGAAAAGAACCTATATCCCA - R - - V L K L C - Q I R M K R T Y I P K D N E S - N Y V N K F E - K E P I S Q I K I M S L E I M L T N S N E K N L Y P . . . . . . 36235 AATGAGTATGGTGTGGAGACTGGAGTTCTCATAGGTGTGTTTGATGTGGTTACACATGAT N E Y G V E T G V L I G V F D V V T H D M S M V W R L E F S - V C L M W L H M I K - V W C G D W S S H R C V - C G Y T - . . . . . . 36295 TTGTGAACTTGTTGCTTTCACATGTTGAGTATTGTAGTTGATTTTATGATATTATCTGAT L - T C C F H M L S I V V D F M I L S D C E L V A F T C - V L - L I L - Y Y L I F V N L L L S H V E Y C S - F Y D I I - . . . . . . 36355 ATATACTATTTTCTATTTTGAGTTGGCCGATGATATCTACTAAGTACCCGTGTTTTGTAC I Y Y F L F - V G R - Y L L S T R V L Y Y T I F Y F E L A D D I Y - V P V F C T Y I L F S I L S W P M I S T K Y P C F V . . . . . . 36415 TGACCCCTACTTGTATGTTTTCTTTTTGTTAATTGTGGAGTGCAGCAAACGTACCGTCAT - P L L V C F L F V N C G V Q Q T Y R H D P Y L Y V F F L L I V E C S K R T V I L T P T C M F S F C - L W S A A N V P S . . . . . . 36475 CTTCAACTCAACCGAAACTCTAGCCAGTCTTCATTACACCGGATTTCAGGGTGAGCTAAT L Q L N R N S S Q S S L H R I S G - A N F N S T E T L A S L H Y T G F Q G E L M S S T Q P K L - P V F I T P D F R V S - . . . . . . 36535 GCTTCTAGCTTGGACTGGATCTTCTTCTTCACGTCTTGATGCCTTGAACTTCCGGCATGG A S S L D W I F F F T S - C L E L P A W L L A W T G S S S S R L D A L N F R H G C F - L G L D L L L H V L M P - T S G M . . . . . . 36595 ACTAGCTTTTTTACTTATTTTAGCTTCTTCGATACTCTTAGATTAGTAATGTGAGGATAG T S F F T Y F S F F D T L R L V M - G - L A F L L I L A S S I L L D - - C E D R D - L F Y L F - L L R Y S - I S N V R I . . . . . . 36655 ATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATATTAATTGATAAGTTTTAGAAGTT M F L - - - L P D F G D I N - - V L E V C S C D D D F Q I L G I L I D K F - K L D V L V M M T S R F W G Y - L I S F R S . . . . . . 36715 GATTATTGATTTCATTAATGAGTTTAAGTCTTCCGCATTATATTATGTTATTATTGGTAA D Y - F H - - V - V F R I I L C Y Y W - I I D F I N E F K S S A L Y Y V I I G K - L L I S L M S L S L P H Y I M L L L V . . . . . . 36775 ACGATTGGGGTTTAGATTGGTTGGTTAGCTCACATAGGAGGATAAATGTGGGTGCCACTC T I G V - I G W L A H I G G - M W V P L R L G F R L V G - L T - E D K C G C H S N D W G L D W L V S S H R R I N V G A T . . . . . . 36835 ACAGCTCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATC T A R F G S - Q T W Y Q S I R F V G L I Q L D L G R D K L G I R A L G S L V S S H S S I W V V T N L V S E H - V R W S H . . . . . . 36895 ACACAAGAATGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTT T Q E - V - - S L K E R - G D A F T F L H K N E S S R V L R N G R G T P L L F F H T R M S L V E S - G T V G G R L Y F S . . . . . . 36955 TGAGAGCCTATAAGACTTTAGGAAAACTCCATTCTTTCTTTTCTTCTTTCGTGCTATTAC - E P I R L - E N S I L S F L L S C Y Y E S L - D F R K T P F F L F F F R A I T L R A Y K T L G K L H S F F S S F V L L . . . . . . 37015 TTGGATCCAATTGGTATCTAGGTGATAAAAATTGGTATCTGGCCATCTTCATTCTATTTC L D P I G I - V I K I G I W P S S F Y F W I Q L V S R - - K L V S G H L H S I S L G S N W Y L G D K N W Y L A I F I L F . . . . . . 37075 GCAGATGGTTAGAACTAGAGCAACAACGAATGCGCCAACACCAACATTGGCAAGACAAGA A D G - N - S N N E C A N T N I G K T R Q M V R T R A T T N A P T P T L A R Q E R R W L E L E Q Q R M R Q H Q H W Q D K . . . 37135 AGCGTCTGAGCCAGCCACTGGGGCTGT S V - A S H W G C A S E P A T G A K R L S Q P L G L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-7_PPS_1 (36398 36640) (frame '2'; 240 bp, 80 residues) 1 VPVFCTDPYL YVFFLLIVEC SKRTVIFNST ETLASLHYTG FQGELMLLAW TGSSSSRLDA 61 LNFRHGLAFL LILASSILLD - >C08HBa0027D09.1+_PGL-3_AGS-7_PPS_2 (36924 37160) (frame '0'; 237 bp, 79 residues) 1 GTVGGRLYFS LRAYKTLGKL HSFFSSFVLL LGSNWYLGDK NWYLAIFILF RRWLELEQQR 61 MRQHQHWQDK KRLSQPLGL AGS-8 (35550 35813,35864 36171) SCR (e 0.799 d 0.000 a 0.750,e 0.877) Exon 1 35550 35813 ( 264 n); score: 0.799 Intron 1 35814 35863 ( 50 n); Pd: 0.000 Pa: 0.750 Exon 2 35864 36171 ( 308 n); score: 0.877 PGS (35550 35813,35864 36171) SGN-E349726+ PGS (35550 35813,35864 35989) SGN-E357559+ 3-phase translation of AGS-8 (+strand): . . . . . . 35550 TCTTTGGTGGAGGTAGGTTATGGTTTTTATGCTATTCGTAGTAAACTCTTAATAGCGAAT S L V E V G Y G F Y A I R S K L L I A N L W W R - V M V F M L F V V N S - - R M F G G G R L W F L C Y S - - T L N S E . . . . . . 35610 GATATGTATTGGGTAGTGTTGTAAACCCTTCTATATGCTTAATTGTGTGCTTGCATGATG D M Y W V V L - T L L Y A - L C A C M M I C I G - C C K P F Y M L N C V L A - C - Y V L G S V V N P S I C L I V C L H D . . . . . . 35670 TGTTTATATAATTGTGATAAAATAAGCATGATGAAGCTATTGAATCCTAAATCTTGAAAA C L Y N C D K I S M M K L L N P K S - K V Y I I V I K - A - - S Y - I L N L E N V F I - L - - N K H D E A I E S - I L K . . . . . . 35730 CCTCTTTGTTAATGATGATGCCTTAGTATGAAAGAAGGCTTGATGAACTAAAGTAATGAG P L C - - - C L S M K E G L M N - S N E L F V N D D A L V - K K A - - T K V M R T S L L M M M P - Y E R R L D E L K - - . . . : . . . 35790 ATTGATGATGCCTTGGTATAAGAG : AAGGCTTGATGAATTAACAGAATGAGACTAGTGGAG I D D A L V - E : K A - - I N R M R L V E L M M P W Y K R : R L D E L T E - D - W S D - - C L G I R : E G L M N - Q N E T S G . . . . . . 35900 CGGGTGTCACGAATCGACACGTAAAATTAGGGGATCGGGTGTCACGAAACGACACGTAGA R V S R I D T - N - G I G C H E T T R R G C H E S T R K I R G S G V T K R H V E A G V T N R H V K L G D R V S R N D T - . . . . . . 35960 ATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGGTGTCACGAACC I R G S G V T N R H V E L G D Q V S R T L G D R V S R T D T - N - G I R C H E P N - G I G C H E P T R R I R G S G V T N . . . . . . 36020 AACACGTAGAATTAGGGGATCGGGTGTCACGGACCGACACGTAGAATTAGGGGATCGGGT N T - N - G I G C H G P T R R I R G S G T R R I R G S G V T D R H V E L G D R V Q H V E L G D R V S R T D T - N - G I G . . . . . . 36080 GTCATGAACCGACACGTAGAATTAGGGGATCGGAGTGTCACGTTCTGACATATAGTAGTA V M N R H V E L G D R S V T F - H I V V S - T D T - N - G I G V S R S D I - - - C H E P T R R I R G S E C H V L T Y S S . . . . 36140 GGGGAGCGGAGTGTCACGTACCGACACAAGAG G E R S V T Y R H K G S G V S R T D T R R G A E C H V P T Q E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-9 (35836 36074,36146 36592) SCR (e 0.870 d 0.000 a 0.000,e 0.813) Exon 1 35836 36074 ( 239 n); score: 0.870 Intron 1 36075 36145 ( 71 n); Pd: 0.000 Pa: 0.000 Exon 2 36146 36592 ( 447 n); score: 0.813 PGS (35836 36074,36146 36592) SGN-E241789- 3-phase translation of AGS-9 (+strand): . . . . . . 35836 TGAGATTGATGATGCCTTGGTGTAAAAGAAGGCTTGATGAATTAACAGAATGAGACTAGT - D - - C L G V K E G L M N - Q N E T S E I D D A L V - K K A - - I N R M R L V R L M M P W C K R R L D E L T E - D - . . . . . . 35896 GGAGCGGGTGTCACGAATCGACACGTAAAATTAGGGGATCGGGTGTCACGAAACGACACG G A G V T N R H V K L G D R V S R N D T E R V S R I D T - N - G I G C H E T T R W S G C H E S T R K I R G S G V T K R H . . . . . . 35956 TAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGGTGTCACG - N - G I G C H E P T R R I R G S G V T R I R G S G V T N R H V E L G D Q V S R V E L G D R V S R T D T - N - G I R C H . . . . . . : 36016 AACCAACACGTAGAATTAGGGGATCGGGTGTCACGGACCGACACGTAGAATTAGGGGAT : C N Q H V E L G D R V S R T D T - N - G I : T N T - N - G I G C H G P T R R I R G : S E P T R R I R G S G V T D R H V E L G D : . . . . . . 36147 GGAGTGTCACGTACCGACACAAGAGGAATAAAGATAATGAGTCTTGAAATTATGTTAACA G V S R T D T R G I K I M S L E I M L T E C H V P T Q E E - R - - V L K L C - Q R S V T Y R H K R N K D N E S - N Y V N . . . . . . 36207 AATTCGAATGAAAAGAACCTATATCCCAAATGAGTATGGTGTGGAGACTGGAGTTCTCAT N S N E K N L Y P K - V W C G D W S S H I R M K R T Y I P N E Y G V E T G V L I K F E - K E P I S Q M S M V W R L E F S . . . . . . 36267 AGGTGTGTTTGATGTGGTTACACATGATTTGTGAACTTGTTGCTTTCACATGTTGAGTAT R C V - C G Y T - F V N L L L S H V E Y G V F D V V T H D L - T C C F H M L S I - V C L M W L H M I C E L V A F T C - V . . . . . . 36327 TGTAGTTGATTTTATGATATTATCTGATATATACTATTTTCTATTTTGAGTTGGCCGATG C S - F Y D I I - Y I L F S I L S W P M V V D F M I L S D I Y Y F L F - V G R - L - L I L - Y Y L I Y T I F Y F E L A D . . . . . . 36387 ATATCTACTAAGTACCCGTGTTTTGTACTGACCCCTACTTGTATGTTTTCTTTTTGTTAA I S T K Y P C F V L T P T C M F S F C - Y L L S T R V L Y - P L L V C F L F V N D I Y - V P V F C T D P Y L Y V F F L L . . . . . . 36447 TTGTGGAGTGCAGCAAACGTACCGTCATCTTCAACTCAACCGAAACTCTAGCCAGTCTTC L W S A A N V P S S S T Q P K L - P V F C G V Q Q T Y R H L Q L N R N S S Q S S I V E C S K R T V I F N S T E T L A S L . . . . . . 36507 ATTACACCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAC I T P D F R V S - C F - L G L D L L L H L H R I S G - A N A S S L D W I F F F T H Y T G F Q G E L M L L A W T G S S S S . . . 36567 GTCTTGATGCCTTGAACTTCCGGCAT V L M P - T S G S - C L E L P A R L D A L N F R H Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-9_PPS_1 (36398 36592) (frame '0'; 195 bp, 65 residues) 1 VPVFCTDPYL YVFFLLIVEC SKRTVIFNST ETLASLHYTG FQGELMLLAW TGSSSSRLDA 61 LNFRH AGS-10 (37173 39863) SCR (e 0.889) Exon 1 37173 39863 (2691 n); score: 0.889 PGS (37173 37602) SGN-E352180- PGS (37237 37790) SGN-E329287+ PGS (37241 37958) SGN-E356614- PGS (37294 37957) SGN-E352401- PGS (37451 38155) SGN-E349404- PGS (37483 38155) SGN-E351625- PGS (37548 38155) SGN-E357065- PGS (37640 38155) SGN-E352365- PGS (37808 38597) SGN-E356912- PGS (37824 38521) SGN-E356209- PGS (37916 38677) SGN-E214046- PGS (38062 38594) SGN-E353805- PGS (38104 38632) SGN-E577713- PGS (38123 38681) SGN-E244046- PGS (38522 39046) SGN-E355026- PGS (38530 39274) SGN-E355244- PGS (38558 38871) SGN-E352716- PGS (38588 39231) SGN-E352117+ PGS (38728 39343) SGN-E355232- PGS (38728 39274) SGN-E351414- PGS (38728 39023) SGN-E242765- PGS (39114 39792) SGN-E368762- PGS (39151 39863) SGN-E379315- PGS (39270 39863) SGN-E375319- 3-phase translation of AGS-10 (+strand): . . . . . . 37173 GAGTAGTGGCAAGAGGCCGTGGAAGGGGTCGCGGGAGGACGTCCTCTAGAGGAATAGGAC E - W Q E A V E G V A G G R P L E E - D S S G K R P W K G S R E D V L - R N R T V V A R G R G R G R G R T S S R G I G . . . . . . 37233 AAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGGCTGAAGAAGTAGTAA K H L A H L V L G R - L L H R L K K - - S T - P I W Y - G G D S S T G - R S S K Q A P S P S G T R A V T P P P A E E V V . . . . . . 37293 GAGAGGGGGAGGATGGGGAAAATGAGCAAGTACAGAATGAGGAATTACCACCCCAACCTA E R G R M G K M S K Y R M R N Y H P N L R G G G W G K - A S T E - G I T T P T Y R E G E D G E N E Q V Q N E E L P P Q P . . . . . . 37353 CCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGCCAGA P Q R - S I R F L L I L V G Y L I K A R P R D D Q S G S C L S - W V I - S R P D T P E M I N Q V L A Y L S G L S D Q G Q . . . . . . 37413 CACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTATAACATGCAGCTACTG H L Q C F L H Q H L R F R R Y N M Q L L T S S V F C T S T S G S G G I T C S Y C T P P V F S A P A P Q V P E V - H A A T . . . . . . 37473 TAGCTCCTCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGAC - L L A W M P H W K - A R F L V - L Q D S S S H G C L I G N R H V S S S D Y R T V A P R M D A S L E I G T F P R L T T G . . . . . . 37533 CTATAATGATAAATGATCAGCATGTACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAA L - - - M I S M Y F S V S S - N - N L Q Y N D K - S A C T F Q - V L E I K T S N P I M I N D Q H V L F S K F L K L K P P . . . . . . 37593 TCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTAC S S R V L N L R M P T I F W L T V M S Y L Q G C - I - G C L R F S G - L S - A T I F K G A E S E D A Y D F L V D C H E L . . . . . . 37653 TACACAAGATGGGAATAGTAAAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAG Y T R W E - - N G L V L S L - L I S F K T Q D G N S K T V W C - V C D L S V S R L H K M G I V K R F G V E F V T Y Q F Q . . . . . . 37713 GAAACGCCAAAATGTGGTGGCGGTCACATGTTGACTGTCAACCAACAGAGGCACCACCTA E T P K C G G G H M L T V N Q Q R H H L K R Q N V V A V T C - L S T N R G T T Y G N A K M W W R S H V D C Q P T E A P P . . . . . . 37773 TGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGG - L G H H S L A C L W R S I S P G L - G D L G I I L - L V Y G E V Y P P D F E G M T W A S F S S L F M E K Y I P R T L R . . . . . . 37833 ATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCCAGGTAGGATGTCGGTTACTGCATATG I G K E M S S - A - S Q V G C R L L H M - E K R - V L E P R A R - D V G Y C I - D R K R D E F L S L E P G R M S V T A Y . . . . . . 37893 AGGCTAAGTTTCGTGCATTATCTAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGC R L S F V H Y L G M P P N F V S V H K S G - V S C I I - V C H P T L F Q S T R A E A K F R A L S R Y A T Q L C F S P Q E . . . . . . 37953 GGATTCACCATTTTGTGAAGGGGTTGAGGTCAGAACTGCGGATTTCAGCCTTACAGGTAG G F T I L - R G - G Q N C G F Q P Y R - D S P F C E G V E V R T A D F S L T G S R I H H F V K G L R S E L R I S A L Q V . . . . . . 38013 CGGCTACGGCAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAAAGGTGGAAGGAGTGA R L R Q N P F K K W - T S - - R W K E - G Y G K I L S R S G R L R D K G G R S E A A T A K S F Q E V V D F V I K V E G V . . . . . . 38073 AGCCAGATGACTTCACCATGGCATCGACATCAAAAAGGTTTCAAAAGGGAGGTGAGTTTA S Q M T S P W H R H Q K G F K R E V S L A R - L H H G I D I K K V S K G R - V - K P D D F T M A S T S K R F Q K G G E F . . . . . . 38133 ATTGTTCTTACTCTAGAGGACAGGGTTCAGAAGGTTACTCAGTCCGACCAATTCAGTCTT I V L T L E D R V Q K V T Q S D Q F S L L F L L - R T G F R R L L S P T N S V F N C S Y S R G Q G S E G Y S V R P I Q S . . . . . . 38193 CACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTATGAGAGACCTA H Y R L - L G V H L R P V N T S M R D L T T D C S W G S T S D R S T L L - E T Y S L Q T V V G G P P Q T G Q H F Y E R P . . . . . . 38253 TGCTTGACTCCAGGGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTC C L T P G S V M D V G R L D I L G G I V A - L Q G V L W M W G D W T Y - E E L S M L D S R E C Y G C G E T G H I R R N C . . . . . . 38313 CAAAACAGAGTTATATACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTT Q N R V I Y P Q - L E V E V V M V E A V K T E L Y T P N S - R - R W S W - R P L P K Q S Y I P P I A R G R G G H G R G R . . . . . . 38373 ATTTTGGAGAACGCGGTGGCCGAGGTAATGGTGGTCACTAAAACGGCTGGGGTAACGGGC I L E N A V A E V M V V T K T A G V T G F W R T R W P R - W W S L K R L G - R A Y F G E R G G R G N G G H - N G W G N G . . . . . . 38433 AAACTGGAGCCACTACAGCACAACATGGTAGGGGCAACGGGCAGACAGGTGATAGGGCCC K L E P L Q H N M V G A T G R Q V I G P N W S H Y S T T W - G Q R A D R - - G P Q T G A T T A Q H G R G N G Q T G D R A . . . . . . 38493 ATTGTTATGCTTTCCCTGGGAGATCTGAAGCGGAGACATCTGATGCTGTCATCACAGGTA I V M L S L G D L K R R H L M L S S Q V L L C F P W E I - S G D I - C C H H R - H C Y A F P G R S E A E T S D A V I T G . . . . . . 38553 ATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTTTTTGATCATGGATCCACATTTTCTT I F W F V I A W L L Y F L I M D P H F L S F G L - L H G F C I F - S W I H I F L N L L V C D C M A S V F F D H G S T F S . . . . . . 38613 ATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAACTGCTTGACATGCCTA M Y L P H L L M V L I Y I V N C L T C L C I F L I C - W S - F T L - T A - H A Y Y V S S S F A N G L N L H C E L L D M P . . . . . . 38673 TTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTGGGG F V F L L R W V S L - - L K K Y I G L G S C F Y S G G - V C D S - K S I - V W G I R V S T P V G E S V I V E K V Y R S G . . . . . . 38733 AGCAATACTCATGTAGACTTGGTTATCTCAGAAATGGTTGATTTTGATGTAATTCTGGGT S N T H V D L V I S E M V D F D V I L G A I L M - T W L S Q K W L I L M - F W V E Q Y S C R L G Y L R N G - F - C N S G . . . . . . 38793 TTGACTTGGCTTTCTCTGAATTTTGCGATCTTGGATTGTAATGCTAAAACTGTGACGTTA L T W L S L N F A I L D C N A K T V T L - L G F L - I L R S W I V M L K L - R - F D L A F S E F C D L G L - C - N C D V . . . . . . 38853 GCCAAGCCTGGGACAGATCCGTTAGCGTGGGAGGGCGACTACACTTCCACTCCGGTTCGT A K P G T D P L A W E G D Y T S T P V R P S L G Q I R - R G R A T T L P L R F V S Q A W D R S V S V G G R L H F H S G S . . . . . . 38913 ATCATCTCCGTTCTTCGTGCTAAGAGAATGGTAAGTAAGGGGTGTTTAGATTTCTTGTCA I I S V L R A K R M V S K G C L D F L S S S P F F V L R E W - V R G V - I S C H Y H L R S S C - E N G K - G V F R F L V . . . . . . 38973 CATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCTGTGAG H L R D D T T Q V P S I E S V S I V C E I S G M I L P K Y L Q L S Q F R - S V S T S Q G - Y Y P S T F N - V S F D S L - . . . . . . 39033 TTTCTAGATGTGTTTCCCACAGATCTTCCTGGTATGCCACCGGATAGAGATATTGACTTC F L D V F P T D L P G M P P D R D I D F F - M C F P Q I F L V C H R I E I L T S V S R C V S H R S S W Y A T G - R Y - L . . . . . . 39093 TGCATCGATCTTGAACCGGGTACTCGCCCCGTTTCTATACCCCCTTATAGAATGGCTCCC C I D L E P G T R P V S I P P Y R M A P A S I L N R V L A P F L Y P L I E W L P L H R S - T G Y S P R F Y T P L - N G S . . . . . . 39153 GCGGAGTTGAGCGAGTTAAAGGCTCAACTTCAAGAATTGTTAGGAAATGGCTTCATTAGA A E L S E L K A Q L Q E L L G N G F I R R S - A S - R L N F K N C - E M A S L D R G V E R V K G S T S R I V R K W L H - . . . . . . 39213 CAAAGTGCATATCCTTGGGGTGCTCTTGTTTTGTTTGTGAAGAAGAACGATGGAAGCTTT Q S A Y P W G A L V L F V K K N D G S F K V H I L G V L L F C L - R R T M E A F T K C I S L G C S C F V C E E E R W K L . . . . . . 39273 CGGATGTCCATAGACTACAAATAACTAAATAAGGTAACGGTTAAGAACAAGTATCCTCTT R M S I D Y K - L N K V T V K N K Y P L G C P - T T N N - I R - R L R T S I L F S D V H R L Q I T K - G N G - E Q V S S . . . . . . 39333 CCTCGTATCGATGATTTGTTCGATCAGTTACAAGGTGCTTATACTTTCTCAAAAATTGAC P R I D D L F D Q L Q G A Y T F S K I D L V S M I C S I S Y K V L I L S Q K L T S S Y R - F V R S V T R C L Y F L K N - . . . . . . 39393 TTGAGATCTGGTTACCATCAATTGAAAATACGGGCAACGTATGTGCCCAAGACTGCTTTT L R S G Y H Q L K I R A T Y V P K T A F - D L V T I N - K Y G Q R M C P R L L F L E I W L P S I E N T G N V C A Q D C F . . . . . . 39453 CGGACCAGGTATAGGCATTATGAGTTCTTAGTAATGTCTTTTGGGCTTACGAATGCCCCT R T R Y R H Y E F L V M S F G L T N A P G P G I G I M S S - - C L L G L R M P L S D Q V - A L - V L S N V F W A Y E C P . . . . . . 39513 GCTGCTTTCATGAGCTTGATGAATGGGATTTTTAAGCCATATCTGGATCTCTTTGTCATC A A F M S L M N G I F K P Y L D L F V I L L S - A - - M G F L S H I W I S L S S C C F H E L D E W D F - A I S G S L C H . . . . . . 39573 CTATTCATCGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAGGAGCACTTG L F I D D I L V Y S K S K K E H E E H L Y S S M I Y W Y T Q R A R R N M R S T - P I H R - Y I G I L K E Q E G T - G A L . . . . . . 39633 AGAATTGTATTGGAAACGTTGAGGGAGAAAAAGCTTTATGCCAAATTCTCCAAGTGTGAG R I V L E T L R E K K L Y A K F S K C E E L Y W K R - G R K S F M P N S P S V S E N C I G N V E G E K A L C Q I L Q V - . . . . . . 39693 TTTTGGCTAGATTCAGTGTCTTTCTTGGGACACGTGGTTTCTAAGGATGGAGTGATAGTG F W L D S V S F L G H V V S K D G V I V F G - I Q C L S W D T W F L R M E - - W V L A R F S V F L G T R G F - G W S D S . . . . . . 39753 GATCCATCTAAGATTGAAATAGTGAGGAATTGGGTAAGACCTACTAATGTGTCAGAAGTA D P S K I E I V R N W V R P T N V S E V I H L R L K - - G I G - D L L M C Q K - G S I - D - N S E E L G K T Y - C V R S . . . . . . 39813 AGGAGATTCGTTGGTTTAGCTAGCTACTACCGCCGATTTGTCAAGGGGTTC R R F V G L A S Y Y R R F V K G F G D S L V - L A T T A D L S R G K E I R W F S - L L P P I C Q G V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-10_PPS_1 (37460 38413) (frame '0'; 951 bp, 317 residues) 1 HAATVAPRMD ASLEIGTFPR LTTGPIMIND QHVLFSKFLK LKPPIFKGAE SEDAYDFLVD 61 CHELLHKMGI VKRFGVEFVT YQFQGNAKMW WRSHVDCQPT EAPPMTWASF SSLFMEKYIP 121 RTLRDRKRDE FLSLEPGRMS VTAYEAKFRA LSRYATQLCF SPQERIHHFV KGLRSELRIS 181 ALQVAATAKS FQEVVDFVIK VEGVKPDDFT MASTSKRFQK GGEFNCSYSR GQGSEGYSVR 241 PIQSSLQTVV GGPPQTGQHF YERPMLDSRE CYGCGETGHI RRNCPKQSYI PPIARGRGGH 301 GRGRYFGERG GRGNGGH- >C08HBa0027D09.1+_PGL-3_AGS-10_PPS_2 (38709 39296) (frame '1'; 585 bp, 195 residues) 1 LKKYIGLGSN THVDLVISEM VDFDVILGLT WLSLNFAILD CNAKTVTLAK PGTDPLAWEG 61 DYTSTPVRII SVLRAKRMVS KGCLDFLSHL RDDTTQVPSI ESVSIVCEFL DVFPTDLPGM 121 PPDRDIDFCI DLEPGTRPVS IPPYRMAPAE LSELKAQLQE LLGNGFIRQS AYPWGALVLF 181 VKKNDGSFRM SIDYK- >C08HBa0027D09.1+_PGL-3_AGS-10_PPS_3 (39297 39863) (frame '1'; 567 bp, 189 residues) 1 LNKVTVKNKY PLPRIDDLFD QLQGAYTFSK IDLRSGYHQL KIRATYVPKT AFRTRYRHYE 61 FLVMSFGLTN APAAFMSLMN GIFKPYLDLF VILFIDDILV YSKSKKEHEE HLRIVLETLR 121 EKKLYAKFSK CEFWLDSVSF LGHVVSKDGV IVDPSKIEIV RNWVRPTNVS EVRRFVGLAS 181 YYRRFVKGF >C08HBa0027D09.1+_PGL-3_AGS-10_PPS_4 (37175 37459) (frame '0'; 282 bp, 94 residues) 1 VVARGRGRGR GRTSSRGIGQ APSPSGTRAV TPPPAEEVVR EGEDGENEQV QNEELPPQPT 61 PEMINQVLAY LSGLSDQGQT PPVFSAPAPQ VPEV- 3-phase translation of AGS-10 (-strand): . . . . . . 39863 GAACCCCTTGACAAATCGGCGGTAGTAGCTAGCTAAACCAACGAATCTCCTTACTTCTGA E P L D K S A V V A S - T N E S P Y F - N P L T N R R - - L A K P T N L L T S D T P - Q I G G S S - L N Q R I S L L L . . . . . . 39803 CACATTAGTAGGTCTTACCCAATTCCTCACTATTTCAATCTTAGATGGATCCACTATCAC H I S R S Y P I P H Y F N L R W I H Y H T L V G L T Q F L T I S I L D G S T I T T H - - V L P N S S L F Q S - M D P L S . . . . . . 39743 TCCATCCTTAGAAACCACGTGTCCCAAGAAAGACACTGAATCTAGCCAAAACTCACACTT S I L R N H V S Q E R H - I - P K L T L P S L E T T C P K K D T E S S Q N S H L L H P - K P R V P R K T L N L A K T H T . . . . . . 39683 GGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACGTTTCCAATACAATTCTCAAGTGCTC G E F G I K L F L P Q R F Q Y N S Q V L E N L A - S F F S L N V S N T I L K C S W R I W H K A F S P S T F P I Q F S S A . . . . . . 39623 CTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCGATGAATAGGATGACAAA L M F L L A L - V Y Q Y I I D E - D D K S C S F L L F E Y T N I S S M N R M T K P H V P S C S L S I P I Y H R - I G - Q . . . . . . 39563 GAGATCCAGATATGGCTTAAAAATCCCATTCATCAAGCTCATGAAAGCAGCAGGGGCATT E I Q I W L K N P I H Q A H E S S R G I R S R Y G L K I P F I K L M K A A G A F R D P D M A - K S H S S S S - K Q Q G H . . . . . . 39503 CGTAAGCCCAAAAGACATTACTAAGAACTCATAATGCCTATACCTGGTCCGAAAAGCAGT R K P K R H Y - E L I M P I P G P K S S V S P K D I T K N S - C L Y L V R K A V S - A Q K T L L R T H N A Y T W S E K Q . . . . . . 39443 CTTGGGCACATACGTTGCCCGTATTTTCAATTGATGGTAACCAGATCTCAAGTCAATTTT L G H I R C P Y F Q L M V T R S Q V N F L G T Y V A R I F N - W - P D L K S I F S W A H T L P V F S I D G N Q I S S Q F . . . . . . 39383 TGAGAAAGTATAAGCACCTTGTAACTGATCGAACAAATCATCGATACGAGGAAGAGGATA - E S I S T L - L I E Q I I D T R K R I E K V - A P C N - S N K S S I R G R G Y L R K Y K H L V T D R T N H R Y E E E D . . . . . . 39323 CTTGTTCTTAACCGTTACCTTATTTAGTTATTTGTAGTCTATGGACATCCGAAAGCTTCC L V L N R Y L I - L F V V Y G H P K A S L F L T V T L F S Y L - S M D I R K L P T C S - P L P Y L V I C S L W T S E S F . . . . . . 39263 ATCGTTCTTCTTCACAAACAAAACAAGAGCACCCCAAGGATATGCACTTTGTCTAATGAA I V L L H K Q N K S T P R I C T L S N E S F F F T N K T R A P Q G Y A L C L M K H R S S S Q T K Q E H P K D M H F V - - . . . . . . 39203 GCCATTTCCTAACAATTCTTGAAGTTGAGCCTTTAACTCGCTCAACTCCGCGGGAGCCAT A I S - Q F L K L S L - L A Q L R G S H P F P N N S - S - A F N S L N S A G A I S H F L T I L E V E P L T R S T P R E P . . . . . . 39143 TCTATAAGGGGGTATAGAAACGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAAT S I R G Y R N G A S T R F K I D A E V N L - G G I E T G R V P G S R S M Q K S I F Y K G V - K R G E Y P V Q D R C R S Q . . . . . . 39083 ATCTCTATCCGGTGGCATACCAGGAAGATCTGTGGGAAACACATCTAGAAACTCACAGAC I S I R W H T R K I C G K H I - K L T D S L S G G I P G R S V G N T S R N S Q T Y L Y P V A Y Q E D L W E T H L E T H R . . . . . . 39023 TATCGAAACTGACTCAATTGAAGGTACTTGGGTAGTATCATCCCTGAGATGTGACAAGAA Y R N - L N - R Y L G S I I P E M - Q E I E T D S I E G T W V V S S L R C D K K L S K L T Q L K V L G - Y H P - D V T R . . . . . . 38963 ATCTAAACACCCCTTACTTACCATTCTCTTAGCACGAAGAACGGAGATGATACGAACCGG I - T P L T Y H S L S T K N G D D T N R S K H P L L T I L L A R R T E M I R T G N L N T P Y L P F S - H E E R R - Y E P . . . . . . 38903 AGTGGAAGTGTAGTCGCCCTCCCACGCTAACGGATCTGTCCCAGGCTTGGCTAACGTCAC S G S V V A L P R - R I C P R L G - R H V E V - S P S H A N G S V P G L A N V T E W K C S R P P T L T D L S Q A W L T S . . . . . . 38843 AGTTTTAGCATTACAATCCAAGATCGCAAAATTCAGAGAAAGCCAAGTCAAACCCAGAAT S F S I T I Q D R K I Q R K P S Q T Q N V L A L Q S K I A K F R E S Q V K P R I Q F - H Y N P R S Q N S E K A K S N P E . . . . . . 38783 TACATCAAAATCAACCATTTCTGAGATAACCAAGTCTACATGAGTATTGCTCCCCAGACC Y I K I N H F - D N Q V Y M S I A P Q T T S K S T I S E I T K S T - V L L P R P L H Q N Q P F L R - P S L H E Y C S P D . . . . . . 38723 TATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGT Y I L F Q L S Q T H P P E - K H E - A C I Y F F N Y H R L T H R S R N T N R H V L Y T F S T I T D S P T G V E T R I G M . . . . . . 38663 CAAGCAGTTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATG Q A V H N V N - D H - Q M R K I H K K M K Q F T M - I K T I S K - G R Y I R K C S S S S Q C K L R P L A N E E D T - E N . . . . . . 38603 TGGATCCATGATCAAAAAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGA W I H D Q K I Q K P C N H K P K D Y L - G S M I K K Y R S H A I T N Q K I T C D V D P - S K N T E A M Q S Q T K R L P V . . . . . . 38543 TGACAGCATCAGATGTCTCCGCTTCAGATCTCCCAGGGAAAGCATAACAATGGGCCCTAT - Q H Q M S P L Q I S Q G K H N N G P Y D S I R C L R F R S P R E S I T M G P I M T A S D V S A S D L P G K A - Q W A L . . . . . . 38483 CACCTGTCTGCCCGTTGCCCCTACCATGTTGTGCTGTAGTGGCTCCAGTTTGCCCGTTAC H L S A R C P Y H V V L - W L Q F A R Y T C L P V A P T M L C C S G S S L P V T S P V C P L P L P C C A V V A P V C P L . . . . . . 38423 CCCAGCCGTTTTAGTGACCACCATTACCTCGGCCACCGCGTTCTCCAAAATAACGGCCTC P S R F S D H H Y L G H R V L Q N N G L P A V L V T T I T S A T A F S K I T A S P Q P F - - P P L P R P P R S P K - R P . . . . . . 38363 TACCATGACCACCTCTACCTCTAGCTATTGGGGGTATATAACTCTGTTTTGGACAATTCC Y H D H L Y L - L L G V Y N S V L D N S T M T T S T S S Y W G Y I T L F W T I P L P - P P L P L A I G G I - L C F G Q F . . . . . . 38303 TCCTAATATGTCCAGTCTCCCCACATCCATAACACTCCCTGGAGTCAAGCATAGGTCTCT S - Y V Q S P H I H N T P W S Q A - V S P N M S S L P T S I T L P G V K H R S L L L I C P V S P H P - H S L E S S I G L . . . . . . 38243 CATAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAA H R S V D R S E V D P Q L Q S V V K T E I E V L T G L R W T P N Y S L - - R L N S - K C - P V - G G P P T T V C S E D - . . . . . . 38183 TTGGTCGGACTGAGTAACCTTCTGAACCCTGTCCTCTAGAGTAAGAACAATTAAACTCAC L V G L S N L L N P V L - S K N N - T H W S D - V T F - T L S S R V R T I K L T I G R T E - P S E P C P L E - E Q L N S . . . . . . 38123 CTCCCTTTTGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCTGGCTTCACTCCTT L P F E T F L M S M P W - S H L A S L L S L L K P F - C R C H G E V I W L H S F P P F - N L F D V D A M V K S S G F T P . . . . . . 38063 CCACCTTTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTA P P L S R S L P L L E R I L P - P L P V H L Y H E V Y H F L K G F C R S R Y L - S T F I T K S T T S - K D F A V A A T C . . . . . . 38003 AGGCTGAAATCCGCAGTTCTGACCTCAACCCCTTCACAAAATGGTGAATCCGCTCTTGTG R L K S A V L T S T P S Q N G E S A L V G - N P Q F - P Q P L H K M V N P L L W K A E I R S S D L N P F T K W - I R S C . . . . . . 37943 GACTGAAACAAAGTTGGGTGGCATACCTAGATAATGCACGAAACTTAGCCTCATATGCAG D - N K V G W H T - I M H E T - P H M Q T E T K L G G I P R - C T K L S L I C S G L K Q S W V A Y L D N A R N L A S Y A . . . . . . 37883 TAACCGACATCCTACCTGGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAG - P T S Y L A L G S R T H L F S Y P S K N R H P T W L - A Q E L I S F P I P Q S V T D I L P G S R L K N S S L F L S L K . . . . . . 37823 TCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTG S G G Y T S P - T S - R M M P K S - V V P G D I L L H K Q A R E - C P S H R W C V R G I Y F S I N K L E N D A Q V I G G . . . . . . 37763 CCTCTGTTGGTTGACAGTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGAAACT P L L V D S Q H V T A T T F W R F L E T L C W L T V N M - P P P H F G V S L K L A S V G - Q S T C D R H H I L A F P - N . . . . . . 37703 GATAAGTCACAAACTCAACACCAAACCGTTTTACTATTCCCATCTTGTGTAGTAGCTCAT D K S Q T Q H Q T V L L F P S C V V A H I S H K L N T K P F Y Y S H L V - - L M - - V T N S T P N R F T I P I L C S S S . . . . . . 37643 GACAGTCAACCAGAAAATCGTAGGCATCCTCAGATTCAGCACCCTTGAAGATTGGAGGTT D S Q P E N R R H P Q I Q H P - R L E V T V N Q K I V G I L R F S T L E D W R F - Q S T R K S - A S S D S A P L K I G G . . . . . . 37583 TTAATTTCAAGAACTTACTGAAAAGTACATGCTGATCATTTATCATTATAGGTCCTGTAG L I S R T Y - K V H A D H L S L - V L - - F Q E L T E K Y M L I I Y H Y R S C S F N F K N L L K S T C - S F I I I G P V . . . . . . 37523 TCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGAGGAGCTACAGTAGCTG S D E E T C L F P M R H P C E E L Q - L Q T R K R A Y F Q - G I H A R S Y S S C V R R G N V P I S N E A S M R G A T V A . . . . . . 37463 CATGTTATACCTCCGGAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCCTT H V I P P E P E V L V Q K T L E V S G L M L Y L R N L R C W C R K H W R C L A L A C Y T S G T - G A G A E N T G G V W P . . . . . . 37403 GATCAGATAACCCACTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGG D Q I T H - D K Q E P D - S S L G - V G I R - P T K I S K N L I D H L W G R L G - S D N P L R - A R T - L I I S G V G W . . . . . . 37343 GTGGTAATTCCTCATTCTGTACTTGCTCATTTTCCCCATCCTCCCCCTCTCTTACTACTT V V I P H S V L A H F P H P P P L L L L W - F L I L Y L L I F P I L P L S Y Y F G G N S S F C T C S F S P S S P S L T T . . . . . . 37283 CTTCAGCCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTAGGTGCTTGTCCTATTC L Q P V E E S P P - Y Q M G - V L V L F F S R W R S H R P S T R W A R C L S Y S S S A G G G V T A L V P D G L G A C P I . . . . . . 37223 CTCTAGAGGACGTCCTCCCGCGACCCCTTCCACGGCCTCTTGCCACTACTC L - R T S S R D P F H G L L P L L S R G R P P A T P S T A S C H Y P L E D V L P R P L P R P L A T T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-3_AGS-10_PPS_1 (38623 38195) (frame '2'; 426 bp, 142 residues) 1 GRYIRKCGSM IKKYRSHAIT NQKITCDDSI RCLRFRSPRE SITMGPITCL PVAPTMLCCS 61 GSSLPVTPAV LVTTITSATA FSKITASTMT TSTSSYWGYI TLFWTIPPNM SSLPTSITLP 121 GVKHRSLIEV LTGLRWTPNY SL- >C08HBa0027D09.1-_PGL-3_AGS-10_PPS_2 (39136 38891) (frame '2'; 243 bp, 81 residues) 1 GGIETGRVPG SRSMQKSISL SGGIPGRSVG NTSRNSQTIE TDSIEGTWVV SSLRCDKKSK 61 HPLLTILLAR RTEMIRTGVE V- >C08HBa0027D09.1-_PGL-3_AGS-10_PPS_3 (37956 37750) (frame '0'; 204 bp, 68 residues) 1 IRSCGLKQSW VAYLDNARNL ASYAVTDILP GSRLKNSSLF LSLKVRGIYF SINKLENDAQ 61 VIGGASVG- >C08HBa0027D09.1-_PGL-3_AGS-10_PPS_5 (39667 39470) (frame '2'; 195 bp, 65 residues) 1 SFFSLNVSNT ILKCSSCSFL LFEYTNISSM NRMTKRSRYG LKIPFIKLMK AAGAFVSPKD 61 ITKNS- >C08HBa0027D09.1-_PGL-3_AGS-10_PPS_4 (37368 37174) (frame '0'; 195 bp, 65 residues) 1 LIISGVGWGG NSSFCTCSFS PSSPSLTTSS AGGGVTALVP DGLGACPIPL EDVLPRPLPR 61 PLATT AGS-11 (37864 38050,38778 39291) SCR (e 0.898 d 0.000 a 0.000,e 0.868) Exon 1 37864 38050 ( 187 n); score: 0.898 Intron 1 38051 38777 ( 727 n); Pd: 0.000 Pa: 0.000 Exon 2 38778 39291 ( 514 n); score: 0.868 PGS (37864 38050,38778 39291) SGN-E353359- 3-phase translation of AGS-11 (+strand): . . . . . . 37864 GCCAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCTAGGTATGC A R - D V G Y C I - G - V S C I I - V C P G R M S V T A Y E A K F R A L S R Y A Q V G C R L L H M R L S F V H Y L G M . . . . . . 37924 CACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCACCATTTTGTGAAGGGGTTGAGGTC H P T L F Q S T R A D S P F C E G V E V T Q L C F S P Q E R I H H F V K G L R S P P N F V S V H K S G F T I L - R G - G . . . . . . 37984 AGAACTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAGTGGT R T A D F S L T G S G Y G K I L S R S G E L R I S A L Q V A A T A K S F Q E V V Q N C G F Q P Y R - R L R Q N P F K K W . : . . . . . 38044 AGACTTC : GATGTAATTCTGGGTTTGACTTGGCTTTCTCTGAATTTTGCGATCTTGGATTG R L : R C N S G F D L A F S E F C D L G L D F : D V I L G L T W L S L N F A I L D C - T S : M - F W V - L G F L - I L R S W I . . . . . . 38831 TAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGCGTGGGAGGGCGA - C - N C D V S Q A W D R S V S V G G R N A K T V T L A K P G T D P L A W E G D V M L K L - R - P S L G Q I R - R G R A . . . . . . 38891 CTACACTTCCACTCCGGTTCGTATCATCTCCGTTCTTCGTGCTAAGAGAATGGTAAGTAA L H F H S G S Y H L R S S C - E N G K - Y T S T P V R I I S V L R A K R M V S K T T L P L R F V S S P F F V L R E W - V . . . . . . 38951 GGGGTGTTTAGATTTCTTGTCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGA G V F R F L V T S Q G - Y Y P S T F N - G C L D F L S H L R D D T T Q V P S I E R G V - I S C H I S G M I L P K Y L Q L . . . . . . 39011 GTCAGTTTCGATAGTCTGTGAGTTTCTAGATGTGTTTCCCACAGATCTTCCTGGTATGCC V S F D S L - V S R C V S H R S S W Y A S V S I V C E F L D V F P T D L P G M P S Q F R - S V S F - M C F P Q I F L V C . . . . . . 39071 ACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCGTTTCTAT T G - R Y - L L H R S - T G Y S P R F Y P D R D I D F C I D L E P G T R P V S I H R I E I L T S A S I L N R V L A P F L . . . . . . 39131 ACCCCCTTATAGAATGGCTCCCGCGGAGTTGAGCGAGTTAAAGGCTCAACTTCAAGAATT T P L - N G S R G V E R V K G S T S R I P P Y R M A P A E L S E L K A Q L Q E L Y P L I E W L P R S - A S - R L N F K N . . . . . . 39191 GTTAGGAAATGGCTTCATTAGACAAAGTGCATATCCTTGGGGTGCTCTTGTTTTGTTTGT V R K W L H - T K C I S L G C S C F V C L G N G F I R Q S A Y P W G A L V L F V C - E M A S L D K V H I L G V L L F C L . . . . . 39251 GAAGAAGAACGATGGAAGCTTTCGGATGTCCATAGACTACA E E E R W K L S D V H R L K K N D G S F R M S I D Y - R R T M E A F G C P - T T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-11_PPS_1 (37865 38050,38778 39290) (frame '2'; 699 bp, 233 residues) 1 PGRMSVTAYE AKFRALSRYA TQLCFSPQER IHHFVKGLRS ELRISALQVA ATAKSFQEVV 61 DFDVILGLTW LSLNFAILDC NAKTVTLAKP GTDPLAWEGD YTSTPVRIIS VLRAKRMVSK 121 GCLDFLSHLR DDTTQVPSIE SVSIVCEFLD VFPTDLPGMP PDRDIDFCID LEPGTRPVSI 181 PPYRMAPAEL SELKAQLQEL LGNGFIRQSA YPWGALVLFV KKNDGSFRMS IDY AGS-12 (40060 41092) SCR (e 0.886) Exon 1 40060 41092 (1033 n); score: 0.886 PGS (40060 40646) SGN-E352950- PGS (40060 40646) SGN-E357100- PGS (40093 40646) SGN-E352647- PGS (40550 41092) SGN-E353207- PGS (40775 41062) SGN-E578131- 3-phase translation of AGS-12 (+strand): . . . . . . 40060 GCAATTAAAGGTGCATGAACGTAACTATGCGACCCATGATTTGGGGTTGGCTGCGGTAGT A I K G A - T - L C D P - F G V G C G S Q L K V H E R N Y A T H D L G L A A V V N - R C M N V T M R P M I W G W L R - . . . . . . 40120 GTTTGCATTAAAGCAATGGAGACATTATTTATATGGGGTTAAGTGTGAAGTCTACATGGA V C I K A M E T L F I W G - V - S L H G F A L K Q W R H Y L Y G V K C E V Y M D C L H - S N G D I I Y M G L S V K S T W . . . . . . 40180 TCATCGTAGCCTACAGTGTGTCTTTACTCAGAAAGATTTGAATTTAAGAGAGAGAAGGTG S S - P T V C L Y S E R F E F K R E K V H R S L Q C V F T Q K D L N L R E R R W I I V A Y S V S L L R K I - I - E R E G . . . . . . 40240 GATGGAACTACCGAAGGATTATGACATCACTATCTTGTATCATCCGGGAAAGGCTAATGT D G T T E G L - H H Y L V S S G K G - C M E L P K D Y D I T I L Y H P G K A N V G W N Y R R I M T S L S C I I R E R L M . . . . . . 40300 TGTGGCAGATGCCTTAAGTAGAAAGGCAGGGAGCATGGGAAGTCTAGCCCACTTGAAAGT C G R C L K - K G R E H G K S S P L E S V A D A L S R K A G S M G S L A H L K V L W Q M P - V E R Q G A W E V - P T - K . . . . . . 40360 TTCTAGACATGCATTCGCTAGAGAGGTTCAGACTCTGGCTATCGACTTTATGAGGTTAGA F - T C I R - R G S D S G Y R L Y E V R S R H A F A R E V Q T L A I D F M R L E F L D M H S L E R F R L W L S T L - G - . . . . . . 40420 GGTAAATGAGAAAGGAGGATTGTTGGCTTGTATAGAGGCAAGATCTTCCTTTCTTGACAA G K - E R R I V G L Y R G K I F L S - Q V N E K G G L L A C I E A R S S F L D K R - M R K E D C W L V - R Q D L P F L T . . . . . . 40480 GATTAAGGGAAAGCAATTTAATGATGAGAAGCTGATTCGGATACGAGATAAGGTGTTGCG D - G K A I - - - E A D S D T R - G V A I K G K Q F N D E K L I R I R D K V L R R L R E S N L M M R S - F G Y E I R C C . . . . . . 40540 AGGAGAGGCTAAAGAAGCAATAATGGATGAGGAAGGTGTTTTGAGAATTAAGGGAAGGGT R R G - R S N N G - G R C F E N - G K G G E A K E A I M D E E G V L R I K G R V E E R L K K Q - W M R K V F - E L R E G . . . . . . 40600 ATGTGTGCCCCGTGTTGATGATTTGATCCACACTATTCTCACTGAGGCTCATAGCTCAAG M C A P C - - F D P H Y S H - G S - L K C V P R V D D L I H T I L T E A H S S R Y V C P V L M I - S T L F S L R L I A Q . . . . . . 40660 GTATTCTATACATCCTGGTGCAACCAAGATGTACCGCGACCTAAAGCAACACTTTTGGTG V F Y T S W C N Q D V P R P K A T L L V Y S I H P G A T K M Y R D L K Q H F W W G I L Y I L V Q P R C T A T - S N T F G . . . . . . 40720 GAGTAGAATGAAGCGTGACATTGTGGAGTTTATTGCCAAATGTCCAAATTATCAGCAAGT E - N E A - H C G V Y C Q M S K L S A S S R M K R D I V E F I A K C P N Y Q Q V G V E - S V T L W S L L P N V Q I I S K . . . . . . 40780 AAAATATGAACACCAGAGGCCCGGAGGAACACTTTAGAGAATGCCTATTCCTGAATGGAA K I - T P E A R R N T L E N A Y S - M E K Y E H Q R P G G T L - R M P I P E W K - N M N T R G P E E H F R E C L F L N G . . . . . . 40840 GTGGGAAAGGATTGCAATGGACTTCGTGGTTGGTCTTCCCAAGACAATGGGTAAGTATGA V G K D C N G L R G W S S Q D N G - V - W E R I A M D F V V G L P K T M G K Y D S G K G L Q W T S W L V F P R Q W V S M . . . . . . 40900 CTCCATTTGGGGTAATTTTTGATAGGTTAACTAAGTCTGCTCACTTCATTCCGGTCAAGG L H L G - F L I G - L S L L T S F R S R S I W G N F - - V N - V C S L H S G Q G T P F G V I F D R L T K S A H F I P V K . . . . . . 40960 TGACTTACAATGCAGAGAAGTTAGCCAAACTTTACATTTCGGAAGTTGTGCGATTGCATG - L T M Q R S - P N F T F R K L C D C M D L Q C R E V S Q T L H F G S C A I A W V T Y N A E K L A K L Y I S E V V R L H . . . . . . 41020 GAGTTCCACTTTCCATTATATCAGATAGAGGTACGCAGTTTACTTCTACGTTTTGGAAAA E F H F P L Y Q I E V R S L L L R F G K S S T F H Y I R - R Y A V Y F Y V L E N G V P L S I I S D R G T Q F T S T F W K . . 41080 CATTGCATGCAGA H C M Q I A C R T L H A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-3_AGS-12_PPS_1 (40061 40816) (frame '2'; 753 bp, 251 residues) 1 QLKVHERNYA THDLGLAAVV FALKQWRHYL YGVKCEVYMD HRSLQCVFTQ KDLNLRERRW 61 MELPKDYDIT ILYHPGKANV VADALSRKAG SMGSLAHLKV SRHAFAREVQ TLAIDFMRLE 121 VNEKGGLLAC IEARSSFLDK IKGKQFNDEK LIRIRDKVLR GEAKEAIMDE EGVLRIKGRV 181 CVPRVDDLIH TILTEAHSSR YSIHPGATKM YRDLKQHFWW SRMKRDIVEF IAKCPNYQQV 241 KYEHQRPGGT L- 3-phase translation of AGS-12 (-strand): . . . . . . 41092 TCTGCATGCAATGTTTTCCAAAACGTAGAAGTAAACTGCGTACCTCTATCTGATATAATG S A C N V F Q N V E V N C V P L S D I M L H A M F S K T - K - T A Y L Y L I - W C M Q C F P K R R S K L R T S I - Y N . . . . . . 41032 GAAAGTGGAACTCCATGCAATCGCACAACTTCCGAAATGTAAAGTTTGGCTAACTTCTCT E S G T P C N R T T S E M - S L A N F S K V E L H A I A Q L P K C K V W L T S L G K W N S M Q S H N F R N V K F G - L L . . . . . . 40972 GCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAAAAATT A L - V T L T G M K - A D L V N L S K I H C K S P - P E - S E Q T - L T Y Q K L C I V S H L D R N E V S R L S - P I K N . . . . . . 40912 ACCCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCCATTGC T P N G V I L T H C L G K T N H E V H C P Q M E S Y L P I V L G R P T T K S I A Y P K W S H T Y P L S W E D Q P R S P L . . . . . . 40852 AATCCTTTCCCACTTCCATTCAGGAATAGGCATTCTCTAAAGTGTTCCTCCGGGCCTCTG N P F P L P F R N R H S L K C S S G P L I L S H F H S G I G I L - S V P P G L W Q S F P T S I Q E - A F S K V F L R A S . . . . . . 40792 GTGTTCATATTTTACTTGCTGATAATTTGGACATTTGGCAATAAACTCCACAATGTCACG V F I F Y L L I I W T F G N K L H N V T C S Y F T C - - F G H L A I N S T M S R G V H I L L A D N L D I W Q - T P Q C H . . . . . . 40732 CTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCGCGGTACATCTTGGTTGCACCAGG L H S T P P K V L L - V A V H L G C T R F I L L H Q K C C F R S R Y I L V A P G A S F Y S T K S V A L G R G T S W L H Q . . . . . . 40672 ATGTATAGAATACCTTGAGCTATGAGCCTCAGTGAGAATAGTGTGGATCAAATCATCAAC M Y R I P - A M S L S E N S V D Q I I N C I E Y L E L - A S V R I V W I K S S T D V - N T L S Y E P Q - E - C G S N H Q . . . . . . 40612 ACGGGGCACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCCATTATTGCTTC T G H T Y P S L N S Q N T F L I H Y C F R G T H T L P L I L K T P S S S I I A S H G A H I P F P - F S K H L P H P L L L . . . . . . 40552 TTTAGCCTCTCCTCGCAACACCTTATCTCGTATCCGAATCAGCTTCTCATCATTAAATTG F S L S S Q H L I S Y P N Q L L I I K L L A S P R N T L S R I R I S F S S L N C L - P L L A T P Y L V S E S A S H H - I . . . . . . 40492 CTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCTATACAAGCCAACAATCCTCC L S L N L V K K G R S C L Y T S Q Q S S F P L I L S R K E D L A S I Q A N N P P A F P - S C Q E R K I L P L Y K P T I L . . . . . . 40432 TTTCTCATTTACCTCTAACCTCATAAAGTCGATAGCCAGAGTCTGAACCTCTCTAGCGAA F L I Y L - P H K V D S Q S L N L S S E F S F T S N L I K S I A R V - T S L A N L S H L P L T S - S R - P E S E P L - R . . . . . . 40372 TGCATGTCTAGAAACTTTCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAA C M S R N F Q V G - T S H A P C L S T - A C L E T F K W A R L P M L P A F L L K M H V - K L S S G L D F P C S L P F Y L . . . . . . 40312 GGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATGTCATAATCCTT G I C H N I S L S R M I Q D S D V I I L A S A T T L A F P G - Y K I V M S - S F R H L P Q H - P F P D D T R - - C H N P . . . . . . 40252 CGGTAGTTCCATCCACCTTCTCTCTCTTAAATTCAAATCTTTCTGAGTAAAGACACACTG R - F H P P S L S - I Q I F L S K D T L G S S I H L L S L K F K S F - V K T H C S V V P S T F S L L N S N L S E - R H T . . . . . . 40192 TAGGCTACGATGATCCATGTAGACTTCACACTTAACCCCATATAAATAATGTCTCCATTG - A T M I H V D F T L N P I - I M S P L R L R - S M - T S H L T P Y K - C L H C V G Y D D P C R L H T - P H I N N V S I . . . . . . 40132 CTTTAATGCAAACACTACCGCAGCCAACCCCAAATCATGGGTCGCATAGTTACGTTCATG L - C K H Y R S Q P Q I M G R I V T F M F N A N T T A A N P K S W V A - L R S C A L M Q T L P Q P T P N H G S H S Y V H . . 40072 CACCTTTAATTGC H L - L T F N C A P L I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-3_AGS-12_PPS_1 (40647 40387) (frame '2'; 258 bp, 86 residues) 1 ASVRIVWIKS STRGTHTLPL ILKTPSSSII ASLASPRNTL SRIRISFSSL NCFPLILSRK 61 EDLASIQANN PPFSFTSNLI KSIARV- >C08HBa0027D09.1-_PGL-3_AGS-12_PPS_3 (40939 40700) (frame '1'; 237 bp, 79 residues) 1 ADLVNLSKIT PNGVILTHCL GKTNHEVHCN PFPLPFRNRH SLKCSSGPLV FIFYLLIIWT 61 FGNKLHNVTL HSTPPKVLL- >C08HBa0027D09.1-_PGL-3_AGS-12_PPS_2 (40654 40415) (frame '1'; 237 bp, 79 residues) 1 AMSLSENSVD QIINTGHTYP SLNSQNTFLI HYCFFSLSSQ HLISYPNQLL IIKLLSLNLV 61 KKGRSCLYTS QQSSFLIYL- PGL 4 (- strand): 49529 41813 AGS-1 (42842 41813) SCR (e 0.882) Exon 1 42842 41813 (1030 n); score: 0.882 PGS (42352 41813) SGN-E353207- PGS (42842 42256) SGN-E352950- PGS (42842 42256) SGN-E357100- PGS (42809 42256) SGN-E352647- 3-phase translation of AGS-1 (-strand): . . . . . . 42842 GCAATTGAAAGTGCATGAACATAACTATCCGACCCATGATTTGGAGTTGGCTGCAGTCGT A I E S A - T - L S D P - F G V G C S R Q L K V H E H N Y P T H D L E L A A V V N - K C M N I T I R P M I W S W L Q S . . . . . . 42782 GTTTGCATTAAAGCTATGAAGACATTATCTATATGGGGTTAAGTGTGAAGTCTATACAGA V C I K A M K T L S I W G - V - S L Y R F A L K L - R H Y L Y G V K C E V Y T D C L H - S Y E D I I Y M G L S V K S I Q . . . . . . 42722 TCATCGTTGTTTTTAGTATGCTTTTACTCAGAAAGATTTGAATTTAAGGCAGAGGAGGTG S S L F L V C F Y S E R F E F K A E E V H R C F - Y A F T Q K D L N L R Q R R W I I V V F S M L L L R K I - I - G R G G . . . . . . 42662 GATGGAACTACTGAAGGACTATGATATGACTATTTTGTATCACCCAGGAAAAGCTAATGT D G T T E G L - Y D Y F V S P R K S - C M E L L K D Y D M T I L Y H P G K A N V G W N Y - R T M I - L F C I T Q E K L M . . . . . . 42602 TGTGGCAGATGCTTTAAGTAGAAAAGCAGGGAGCATGGGAAGTCTAGCCCACTTACAGGT C G R C F K - K S R E H G K S S P L T G V A D A L S R K A G S M G S L A H L Q V L W Q M L - V E K Q G A W E V - P T Y R . . . . . . 42542 TTCTAGACGCCCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGATGTTATGAGGCTGGA F - T P I G - R G S D S S - - C Y E A G S R R P L A R E V Q T L A N D V M R L E F L D A H W L E R F R L - L M M L - G W . . . . . . 42482 AGTACTAGAGAAGGGAGGATTTCTGGCCTGTGTGGAGGCAAGATCTTCTTTTCTTGACAA S T R E G R I S G L C G G K I F F S - Q V L E K G G F L A C V E A R S S F L D K K Y - R R E D F W P V W R Q D L L F L T . . . . . . 42422 GATTAAGGGAAAACAGTTTACTAATGAGAAACTGATCCGAATTCGAGATATGGTATTACG D - G K T V Y - - E T D P N S R Y G I T I K G K Q F T N E K L I R I R D M V L R R L R E N S L L M R N - S E F E I W Y Y . . . . . . 42362 AGGAGAGGCTAAAGAGGAAATAATTGATGAGGAAGGTTTTTTGAGAATTAAGGGAAGGGT R R G - R G N N - - G R F F E N - G K G G E A K E E I I D E E G F L R I K G R V E E R L K R K - L M R K V F - E L R E G . . . . . . 42302 ATGTGTGCCCCGTGTTGATAATTTGATTCACACTATTCTTACAGAGGCTCATAGTTCAAG M C A P C - - F D S H Y S Y R G S - F K C V P R V D N L I H T I L T E A H S S R Y V C P V L I I - F T L F L Q R L I V Q . . . . . . 42242 GCATTCTATACATCCTGGTGCAACCAAGATGTATCGCGACCTAAAGCATTATTTTTGGTG A F Y T S W C N Q D V S R P K A L F L V H S I H P G A T K M Y R D L K H Y F W W G I L Y I L V Q P R C I A T - S I I F G . . . . . . 42182 GAGTAGGATGAAGCGTGACAATGTTGATTTTGTTGACCAATGTCTGAATTGTCAGCAGGT E - D E A - Q C - F C - P M S E L S A G S R M K R D N V D F V D Q C L N C Q Q V G V G - S V T M L I L L T N V - I V S R . . . . . . 42122 AAAGTATGAACACCAGAGGCCCGGAGGAACACTTCAAAAAATGCCCATTCCTGAATGGAA K V - T P E A R R N T S K N A H S - M E K Y E H Q R P G G T L Q K M P I P E W K - S M N T R G P E E H F K K C P F L N G . . . . . . 42062 ATGGGAAAGAATTGCAATGGATTTTGTGGTTAGTCTTCCAAAGACATTGGGTAAGTTTGA M G K N C N G F C G - S S K D I G - V - W E R I A M D F V V S L P K T L G K F D N G K E L Q W I L W L V F Q R H W V S L . . . . . . 42002 TTCTACTTGGGTAATTGTTGATAAATTAACTAAGTCTGCTCACTTTATTCCGGTCAAGGT F Y L G N C - - I N - V C S L Y S G Q G S T W V I V D K L T K S A H F I P V K V I L L G - L L I N - L S L L T L F R S R . . . . . . 41942 GACTTATAATGCTAAGAAGTTAGCCAAACTCTATACCTCAGAAATTGTTCGATTGCATGG D L - C - E V S Q T L Y L R N C S I A W T Y N A K K L A K L Y T S E I V R L H G - L I M L R S - P N S I P Q K L F D C M . . . . . . 41882 AGTTCCACTTTCCATCATATCAGATAGAGATACGCAATTTACTTCTAAATTTTGGAACAT S S T F H H I R - R Y A I Y F - I L E H V P L S I I S D R D T Q F T S K F W N I E F H F P S Y Q I E I R N L L L N F G T . 41822 TGCATGCTGA C M L A C - L H A Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-4_AGS-1_PPS_1 (42706 41813) (frame '2'; 891 bp, 297 residues) 1 YAFTQKDLNL RQRRWMELLK DYDMTILYHP GKANVVADAL SRKAGSMGSL AHLQVSRRPL 61 AREVQTLAND VMRLEVLEKG GFLACVEARS SFLDKIKGKQ FTNEKLIRIR DMVLRGEAKE 121 EIIDEEGFLR IKGRVCVPRV DNLIHTILTE AHSSRHSIHP GATKMYRDLK HYFWWSRMKR 181 DNVDFVDQCL NCQQVKYEHQ RPGGTLQKMP IPEWKWERIA MDFVVSLPKT LGKFDSTWVI 241 VDKLTKSAHF IPVKVTYNAK KLAKLYTSEI VRLHGVPLSI ISDRDTQFTS KFWNIAC- 3-phase translation of AGS-1 (+strand): . . . . . . 41813 TCAGCATGCAATGTTCCAAAATTTAGAAGTAAATTGCGTATCTCTATCTGATATGATGGA S A C N V P K F R S K L R I S I - Y D G Q H A M F Q N L E V N C V S L S D M M E S M Q C S K I - K - I A Y L Y L I - W . . . . . . 41873 AAGTGGAACTCCATGCAATCGAACAATTTCTGAGGTATAGAGTTTGGCTAACTTCTTAGC K W N S M Q S N N F - G I E F G - L L S S G T P C N R T I S E V - S L A N F L A K V E L H A I E Q F L R Y R V W L T S - . . . . . . 41933 ATTATAAGTCACCTTGACCGGAATAAAGTGAGCAGACTTAGTTAATTTATCAACAATTAC I I S H L D R N K V S R L S - F I N N Y L - V T L T G I K - A D L V N L S T I T H Y K S P - P E - S E Q T - L I Y Q Q L . . . . . . 41993 CCAAGTAGAATCAAACTTACCCAATGTCTTTGGAAGACTAACCACAAAATCCATTGCAAT P S R I K L T Q C L W K T N H K I H C N Q V E S N L P N V F G R L T T K S I A I P K - N Q T Y P M S L E D - P Q N P L Q . . . . . . 42053 TCTTTCCCATTTCCATTCAGGAATGGGCATTTTTTGAAGTGTTCCTCCGGGCCTCTGGTG S F P F P F R N G H F L K C S S G P L V L S H F H S G M G I F - S V P P G L W C F F P I S I Q E W A F F E V F L R A S G . . . . . . 42113 TTCATACTTTACCTGCTGACAATTCAGACATTGGTCAACAAAATCAACATTGTCACGCTT F I L Y L L T I Q T L V N K I N I V T L S Y F T C - Q F R H W S T K S T L S R F V H T L P A D N S D I G Q Q N Q H C H A . . . . . . 42173 CATCCTACTCCACCAAAAATAATGCTTTAGGTCGCGATACATCTTGGTTGCACCAGGATG H P T P P K I M L - V A I H L G C T R M I L L H Q K - C F R S R Y I L V A P G C S S Y S T K N N A L G R D T S W L H Q D . . . . . . 42233 TATAGAATGCCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATTATCAACACG Y R M P - T M S L C K N S V N Q I I N T I E C L E L - A S V R I V - I K L S T R V - N A L N Y E P L - E - C E S N Y Q H . . . . . . 42293 GGGCACACATACCCTTCCCTTAATTCTCAAAAAACCTTCCTCATCAATTATTTCCTCTTT G H T Y P S L N S Q K T F L I N Y F L F G T H T L P L I L K K P S S S I I S S L G A H I P F P - F S K N L P H Q L F P L . . . . . . 42353 AGCCTCTCCTCGTAATACCATATCTCGAATTCGGATCAGTTTCTCATTAGTAAACTGTTT S L S S - Y H I S N S D Q F L I S K L F A S P R N T I S R I R I S F S L V N C F - P L L V I P Y L E F G S V S H - - T V . . . . . . 42413 TCCCTTAATCTTGTCAAGAAAAGAAGATCTTGCCTCCACACAGGCCAGAAATCCTCCCTT S L N L V K K R R S C L H T G Q K S S L P L I L S R K E D L A S T Q A R N P P F F P - S C Q E K K I L P P H R P E I L P . . . . . . 42473 CTCTAGTACTTCCAGCCTCATAACATCATTAGCTAGAGTCTGAACCTCTCTAGCCAATGG L - Y F Q P H N I I S - S L N L S S Q W S S T S S L I T S L A R V - T S L A N G S L V L P A S - H H - L E S E P L - P M . . . . . . 42533 GCGTCTAGAAACCTGTAAGTGGGCTAGACTTCCCATGCTCCCTGCTTTTCTACTTAAAGC A S R N L - V G - T S H A P C F S T - S R L E T C K W A R L P M L P A F L L K A G V - K P V S G L D F P C S L L F Y L K . . . . . . 42593 ATCTGCCACAACATTAGCTTTTCCTGGGTGATACAAAATAGTCATATCATAGTCCTTCAG I C H N I S F S W V I Q N S H I I V L Q S A T T L A F P G - Y K I V I S - S F S H L P Q H - L F L G D T K - S Y H S P S . . . . . . 42653 TAGTTCCATCCACCTCCTCTGCCTTAAATTCAAATCTTTCTGAGTAAAAGCATACTAAAA - F H P P P L P - I Q I F L S K S I L K S S I H L L C L K F K S F - V K A Y - K V V P S T S S A L N S N L S E - K H T K . . . . . . 42713 ACAACGATGATCTGTATAGACTTCACACTTAACCCCATATAGATAATGTCTTCATAGCTT T T M I C I D F T L N P I - I M S S - L Q R - S V - T S H L T P Y R - C L H S F N N D D L Y R L H T - P H I D N V F I A . . . . . . 42773 TAATGCAAACACGACTGCAGCCAACTCCAAATCATGGGTCGGATAGTTATGTTCATGCAC - C K H D C S Q L Q I M G R I V M F M H N A N T T A A N S K S W V G - L C S C T L M Q T R L Q P T P N H G S D S Y V H A . 42833 TTTCAATTGC F Q L F N C L S I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-4_AGS-1_PPS_1 (42276 42515) (frame '2'; 237 bp, 79 residues) 1 IKLSTRGTHT LPLILKKPSS SIISSLASPR NTISRIRISF SLVNCFPLIL SRKEDLASTQ 61 ARNPPFSSTS SLITSLARV- >C08HBa0027D09.1+_PGL-4_AGS-1_PPS_2 (41978 42202) (frame '1'; 222 bp, 74 residues) 1 FINNYPSRIK LTQCLWKTNH KIHCNSFPFP FRNGHFLKCS SGPLVFILYL LTIQTLVNKI 61 NIVTLHPTPP KIML- AGS-2 (44863 44742,44705 43071) SCR (e 0.828 d 0.000 a 0.000,e 0.857) Exon 1 44863 44742 ( 122 n); score: 0.828 Intron 1 44741 44706 ( 36 n); Pd: 0.000 Pa: 0.000 Exon 2 44705 43071 (1635 n); score: 0.857 PGS (43780 43071) SGN-E379315- PGS (43665 43071) SGN-E375319- PGS (43595 43071) SGN-E204434- PGS (43819 43141) SGN-E368762- PGS (43499 43141) SGN-E240817- PGS (43609 43454) SGN-E578078- PGS (44248 43590) SGN-E355232- PGS (44420 43662) SGN-E355244- PGS (44319 43662) SGN-E351414- PGS (44362 43702) SGN-E352117+ PGS (44428 43887) SGN-E355026- PGS (44392 44062) SGN-E352716- PGS (44863 44742,44705 44271) SGN-E244046- 3-phase translation of AGS-2 (-strand): . . . . . . 44863 GGTGAATTTAGTGGTTCTTACTCCAGAGGGCAGAGTTCAGGAGGTTACCCAGCCCGACCT G E F S G S Y S R G Q S S G G Y P A R P V N L V V L T P E G R V Q E V T Q P D L - I - W F L L Q R A E F R R L P S P T . . . . . . 44803 ATTCAGTCTTCACTGCAGGCTGTAGATGGGGGTCCATCGCAGACCAGTCAACATTTCTCT I Q S S L Q A V D G G P S Q T S Q H F S F S L H C R L - M G V H R R P V N I S L Y S V F T A G C R W G S I A D Q S T F L . : . . . . . 44743 GA : GAGACCTATGCTTGACTCCAAAAATTGTTATGGATGTGGAGAGACTGGACATATTAGG E : R P M L D S K N C Y G C G E T G H I R : R D L C L T P K I V M D V E R L D I L G - : E T Y A - L Q K L L W M W R D W T Y - . . . . . . 44647 AGGTATTGTCCAAAACAGAGTTACAGACCCCCAATAGTTAGAGGTAGAGGTGGTCATGGG R Y C P K Q S Y R P P I V R G R G G H G G I V Q N R V T D P Q - L E V E V V M G E V L S K T E L Q T P N S - R - R W S W . . . . . . 44587 AGAGGCCGCCATTCTGGAGGATGTGGTGTCCAAGGTAATGGTGGTCACCAAATCAGCCGG R G R H S G G C G V Q G N G G H Q I S R E A A I L E D V V S K V M V V T K S A G E R P P F W R M W C P R - W W S P N Q P . . . . . . 44527 GGTGGCGGGCAAGCTGGAGCTACTACAGCGCAACATGGTAGGGGCAACGGGCAGACAGGT G G G Q A G A T T A Q H G R G N G Q T G V A G K L E L L Q R N M V G A T G R Q V G W R A S W S Y Y S A T W - G Q R A D R . . . . . . 44467 GATAGGGCCCATTGTTATGCTTTCCCCGGGAGGTCTGAAGCAGAGACATCTGATGTTGTT D R A H C Y A F P G R S E A E T S D V V I G P I V M L S P G G L K Q R H L M L L - - G P L L C F P R E V - S R D I - C C . . . . . . 44407 ATCACAGGTAATCTTTTGGTCTGTGATTGCATGGCTTCTGTATTATTTGATCTTGGATCC I T G N L L V C D C M A S V L F D L G S S Q V I F W S V I A W L L Y Y L I L D P Y H R - S F G L - L H G F C I I - S W I . . . . . . 44347 ACATTTTCATATGTATCTTCCTCATTTGCTACTGATCTTGATTTACATTATGATTTGCTT T F S Y V S S S F A T D L D L H Y D L L H F H M Y L P H L L L I L I Y I M I C L H I F I C I F L I C Y - S - F T L - F A . . . . . . 44287 GACATGCCTATTCGTGTCTCTACTCCTGTGGGTGAGTCTGTGATAGCTGAGAAGGTGTAT D M P I R V S T P V G E S V I A E K V Y T C L F V S L L L W V S L - - L R R C I - H A Y S C L Y S C G - V C D S - E G V . . . . . . 44227 AGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGATTTGATTATTCTAGAG R S C L V T F V G S N T H V D L I I L E G L V L - L L W G A I L M - I - L F - R - V L S C D F C G E Q Y S C R F D Y S R . . . . . . 44167 ATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTA M V D F D V I L G M T W L S P N F A I L W L I S M - F W V - L G F L Q I L Q S - D G - F R C N S G Y D L A F S K F C N L . . . . . . 44107 GATTATAATGCTAAAACTGTGACATTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAG D Y N A K T V T L A K P G T D P L V W E I I M L K L - H W P S L G Q I R - C G R R L - C - N C D I G Q A W D R S V S V G . . . . . . 44047 GTTGACTATATTTCCACTCCAGTTCGTATTATCTCTTTTCTTCGTGCTAAGAGGATAATT V D Y I S T P V R I I S F L R A K R I I L T I F P L Q F V L S L F F V L R G - L G - L Y F H S S S Y Y L F S S C - E D N . . . . . . 43987 AGTAAGGGTTGTTTAGCTTTCTTGGCCCATCTTAGGGATGATACTTCCAAAGTACCTTCG S K G C L A F L A H L R D D T S K V P S V R V V - L S W P I L G M I L P K Y L R - - G L F S F L G P S - G - Y F Q S T F . . . . . . 43927 ATTGAGTCTGTTTCGATAGTCTGTGAGTTCCTGGATGTGTTTCCTGCAGCTCTTCCTGGT I E S V S I V C E F L D V F P A A L P G L S L F R - S V S S W M C F L Q L F L V D - V C F D S L - V P G C V S C S S S W . . . . . . 43867 ATGCCACCAGATAGGGATATTGAGTTTTGTATTAATCTGGAGCCGGGTACTCGCCCCATT M P P D R D I E F C I N L E P G T R P I C H Q I G I L S F V L I W S R V L A P F Y A T R - G Y - V L Y - S G A G Y S P H . . . . . . 43807 TCCATACCCCCTTATAGAATGGCTCCAGCTGAGTTAAGGGAGTTAAAGACCCAACTTCAA S I P P Y R M A P A E L R E L K T Q L Q P Y P L I E W L Q L S - G S - R P N F K F H T P L - N G S S - V K G V K D P T S . . . . . . 43747 GAATTGTTAGGAAAAGGCTTTATTAGACCAAGTGCATCCCCTTGGGGTGCTCCTATTTTA E L L G K G F I R P S A S P W G A P I L N C - E K A L L D Q V H P L G V L L F Y R I V R K R L Y - T K C I P L G C S Y F . . . . . . 43687 TTTGTGAAGAAGAAGGATGGAAGTTTTTGGATGTGCATAGACTACAGGCAACTGAATAAG F V K K K D G S F W M C I D Y R Q L N K L - R R R M E V F G C A - T T G N - I R I C E E E G W K F L D V H R L Q A T E - . . . . . . 43627 GTAAATATTAAGAACAAGTATCCTATTCCTCACATTGATGATTTGTTCGATCAGTTACAA V N I K N K Y P I P H I D D L F D Q L Q - I L R T S I L F L T L M I C S I S Y K G K Y - E Q V S Y S S H - - F V R S V T . . . . . . 43567 GGTGCTTGTACCTTCTCAAAAATTGATTTGAGATTTGGTTATCATCAATTGAAAATAGGG G A C T F S K I D L R F G Y H Q L K I G V L V P S Q K L I - D L V I I N - K - G R C L Y L L K N - F E I W L S S I E N R . . . . . . 43507 GCAGCAGATGTGCCAAAGACTGCTTTTCAAACCAGGTATGAACATTATGAATTCTTAGTA A A D V P K T A F Q T R Y E H Y E F L V Q Q M C Q R L L F K P G M N I M N S - - G S R C A K D C F S N Q V - T L - I L S . . . . . . 43447 ATGTCTTTTGGGCTTACGAATGCCCCTTCTTCTTTCATGAGCCTGATGAACGGGATTTTT M S F G L T N A P S S F M S L M N G I F C L L G L R M P L L L S - A - - T G F L N V F W A Y E C P F F F H E P D E R D F . . . . . . 43387 AAGCCATATCTGGATCTCGTTGTTATTGTATTTATTGATGATATACTGATATACTCAAAG K P Y L D L V V I V F I D D I L I Y S K S H I W I S L L L Y L L M I Y - Y T Q R - A I S G S R C Y C I Y - - Y T D I L K . . . . . . 43327 AGCAGGAAAGAACATGAGGAGCATTTGAAAATTGTATTGGAATTGTTGAGGGAGAAAAGG S R K E H E E H L K I V L E L L R E K R A G K N M R S I - K L Y W N C - G R K G E Q E R T - G A F E N C I G I V E G E K . . . . . . 43267 CTTTATGCCAAATTCTTTAAGTGTGAGTTTTGGCTAGATTCAGTGTCCTTCTTGGGGCAC L Y A K F F K C E F W L D S V S F L G H F M P N S L S V S F G - I Q C P S W G T A L C Q I L - V - V L A R F S V L L G A . . . . . . 43207 GTGGTTTCTAAGGATGGAGTGATGGTGGATCCATCTAAGATTGAAGCAGTGAAGAGTTGG V V S K D G V M V D P S K I E A V K S W W F L R M E - W W I H L R L K Q - R V G R G F - G W S D G G S I - D - S S E E L . . . . . . 43147 GTAACACCTACTAATGTTACAGAGGTAAGGAGCTTTGCTGGTTTGGCTAGCTACTACCGT V T P T N V T E V R S F A G L A S Y Y R - H L L M L Q R - G A L L V W L A T T V G N T Y - C Y R G K E L C W F G - L L P . . 43087 CGATTTGTCAAGGGATT R F V K G D L S R D S I C Q G I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-4_AGS-2_PPS_1 (44863 44742,44705 43073) (frame '1'; 1755 bp, 585 residues) 1 GEFSGSYSRG QSSGGYPARP IQSSLQAVDG GPSQTSQHFS ERPMLDSKNC YGCGETGHIR 61 RYCPKQSYRP PIVRGRGGHG RGRHSGGCGV QGNGGHQISR GGGQAGATTA QHGRGNGQTG 121 DRAHCYAFPG RSEAETSDVV ITGNLLVCDC MASVLFDLGS TFSYVSSSFA TDLDLHYDLL 181 DMPIRVSTPV GESVIAEKVY RSCLVTFVGS NTHVDLIILE MVDFDVILGM TWLSPNFAIL 241 DYNAKTVTLA KPGTDPLVWE VDYISTPVRI ISFLRAKRII SKGCLAFLAH LRDDTSKVPS 301 IESVSIVCEF LDVFPAALPG MPPDRDIEFC INLEPGTRPI SIPPYRMAPA ELRELKTQLQ 361 ELLGKGFIRP SASPWGAPIL FVKKKDGSFW MCIDYRQLNK VNIKNKYPIP HIDDLFDQLQ 421 GACTFSKIDL RFGYHQLKIG AADVPKTAFQ TRYEHYEFLV MSFGLTNAPS SFMSLMNGIF 481 KPYLDLVVIV FIDDILIYSK SRKEHEEHLK IVLELLREKR LYAKFFKCEF WLDSVSFLGH 541 VVSKDGVMVD PSKIEAVKSW VTPTNVTEVR SFAGLASYYR RFVKG AGS-3 (45748 44948,44167 43642) SCR (e 0.827 d 0.000 a 0.000,e 0.854) Exon 1 45748 44948 ( 801 n); score: 0.827 Intron 1 44947 44168 ( 780 n); Pd: 0.000 Pa: 0.000 Exon 2 44167 43642 ( 526 n); score: 0.854 PGS (45122 44948,44167 43642) SGN-E353359- PGS (45741 45026) SGN-E356614- PGS (45691 45029) SGN-E352401- PGS (45748 45196) SGN-E329287+ 3-phase translation of AGS-3 (-strand): . . . . . . 45748 ACCTGGTCCAGCCAGTAATAGGGCGGTGACTCCTCCACCGACTGATGAGGTACTAAGAGA T W S S Q - - G G D S S T D - - G T K R P G P A S N R A V T P P P T D E V L R E L V Q P V I G R - L L H R L M R Y - E . . . . . . 45688 GGTTGAGGAAGGGGAAAACGAGTAGGTTCAAGATGAGGAATTACCATCCCAGCCTACCTC G - G R G K R V G S R - G I T I P A Y L V E E G E N E - V Q D E E L P S Q P T S R L R K G K T S R F K M R N Y H P S L P . . . . . . 45628 AGAGATGATTAACCAGGTTCTTACTTATCTTAGCGGGTTATCTGATCAGGGACAAACACC R D D - P G S Y L S - R V I - S G T N T E M I N Q V L T Y L S G L S D Q G Q T P Q R - L T R F L L I L A G Y L I R D K H . . . . . . 45568 TCCAGTGTTTTCTACACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGC S S V F Y T S T S G S G S T T C S C C G P V F S T P A P Q V P G V Q H A A A V A L Q C F L H Q H L R F R E Y N M Q L L W . . . . . . 45508 TCCCCACATGGATTCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTAT S P H G F L I G S R H V S S I D Y R V Y P H M D S S L E V G T F P R L T T G S I L P T W I P H W K - A R F L D - L Q G L . . . . . . 45448 AGTGACAAGTGTTCAGCATGAACTTTTCACTAAATTCTTAAAATTGAAACATCCAGTCTT S D K C S A - T F H - I L K I E T S S L V T S V Q H E L F T K F L K L K H P V F - - Q V F S M N F S L N S - N - N I Q S . . . . . . 45388 CAAGGGTGCTGAATCTGAGGATTCCTATGATTTTCTGGTATATTGTCATGAGCTGCTAGA Q G C - I - G F L - F S G I L S - A A R K G A E S E D S Y D F L V Y C H E L L D S R V L N L R I P M I F W Y I V M S C - . . . . . . 45328 TAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGAAT - D G H S R T I R C - V C D L P V S G N K M D I V E R F G V E F V T Y Q F Q G M I R W T - - N D S V L S L - P T S F R E . . . . . . 45268 GCCAAAATGTGGTGGTGGTCGTATGTTGAGTGTCAACCAGCACAGGCATCACCTATGACT A K M W W W S Y V E C Q P A Q A S P M T P K C G G G R M L S V N Q H R H H L - L C Q N V V V V V C - V S T S T G I T Y D . . . . . . 45208 TGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCTCGGACTTTGAGGGACAAG W A S F S S L F M E K Y I P R T L R D K G H H S L A Y L W R S I Y L G L - G T R L G I I L - L I Y G E V Y T S D F E G Q . . . . . . 45148 AGGAGAGATGAGTTCCTGAGCTTAGAGCAAGGCAGGATGTATGTTACTGCTTATGAGGCT R R D E F L S L E Q G R M Y V T A Y E A G E M S S - A - S K A G C M L L L M R L E E R - V P E L R A R Q D V C Y C L - G . . . . . . 45088 AAATTTCGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATT K F R A L S R Y A T Q L C F S P Q E R I N F V H Y P G M P P S F A S V H K S G F - I S C T I Q V C H P A L L Q S T R A D . . . . . . 45028 TGCCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTAGCTGTT C R F V K G L R S D L Q I P A L Q V A V A V L - K D - G Q I C R S Q P Y R - L L L P F C E R I E V R F A D P S L T G S C . . . : . . . 44968 GCAGTAAAATCCTTTCAGGAA : ATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTT A V K S F Q E : M V D F D V I L G M T W L Q - N P F R K : W L I S M - F W V - L G F C S K I L S G : N G - F R C N S G Y D L A . . . . . . 44128 TCTCCAAATTTTGCAATCTTAGATTATAATGCTAAAACTGTGACATTGGCCAAGCCTGGG S P N F A I L D Y N A K T V T L A K P G L Q I L Q S - I I M L K L - H W P S L G F S K F C N L R L - C - N C D I G Q A W . . . . . . 44068 ACAGATCCGTTAGTGTGGGAGGTTGACTATATTTCCACTCCAGTTCGTATTATCTCTTTT T D P L V W E V D Y I S T P V R I I S F Q I R - C G R L T I F P L Q F V L S L F D R S V S V G G - L Y F H S S S Y Y L F . . . . . . 44008 CTTCGTGCTAAGAGGATAATTAGTAAGGGTTGTTTAGCTTTCTTGGCCCATCTTAGGGAT L R A K R I I S K G C L A F L A H L R D F V L R G - L V R V V - L S W P I L G M S S C - E D N - - G L F S F L G P S - G . . . . . . 43948 GATACTTCCAAAGTACCTTCGATTGAGTCTGTTTCGATAGTCTGTGAGTTCCTGGATGTG D T S K V P S I E S V S I V C E F L D V I L P K Y L R L S L F R - S V S S W M C - Y F Q S T F D - V C F D S L - V P G C . . . . . . 43888 TTTCCTGCAGCTCTTCCTGGTATGCCACCAGATAGGGATATTGAGTTTTGTATTAATCTG F P A A L P G M P P D R D I E F C I N L F L Q L F L V C H Q I G I L S F V L I W V S C S S S W Y A T R - G Y - V L Y - S . . . . . . 43828 GAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCAGCTGAGTTAAGG E P G T R P I S I P P Y R M A P A E L R S R V L A P F P Y P L I E W L Q L S - G G A G Y S P H F H T P L - N G S S - V K . . . . . . 43768 GAGTTAAAGACCCAACTTCAAGAATTGTTAGGAAAAGGCTTTATTAGACCAAGTGCATCC E L K T Q L Q E L L G K G F I R P S A S S - R P N F K N C - E K A L L D Q V H P G V K D P T S R I V R K R L Y - T K C I . . . . . . 43708 CCTTGGGGTGCTCCTATTTTATTTGTGAAGAAGAAGGATGGAAGTTTTTGGATGTGCATA P W G A P I L F V K K K D G S F W M C I L G V L L F Y L - R R R M E V F G C A - P L G C S Y F I C E E E G W K F L D V H . 43648 GACTACA D Y T T R L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-4_AGS-3_PPS_1 (45295 44948,44167 43643) (frame '1'; 873 bp, 291 residues) 1 VCDLPVSGNA KMWWWSYVEC QPAQASPMTW ASFSSLFMEK YIPRTLRDKR RDEFLSLEQG 61 RMYVTAYEAK FRALSRYATQ LCFSPQERIC RFVKGLRSDL QIPALQVAVA VKSFQEMVDF 121 DVILGMTWLS PNFAILDYNA KTVTLAKPGT DPLVWEVDYI STPVRIISFL RAKRIISKGC 181 LAFLAHLRDD TSKVPSIESV SIVCEFLDVF PAALPGMPPD RDIEFCINLE PGTRPISIPP 241 YRMAPAELRE LKTQLQELLG KGFIRPSASP WGAPILFVKK KDGSFWMCID Y AGS-4 (45983 45824) SCR (e 0.834) Exon 1 45983 45824 ( 160 n); score: 0.834 PGS (45983 45824) SGN-E355114+ 3-phase translation of AGS-4 (-strand): . . . . . . 45983 TTCTTTCATGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGAT F F H A I T W I Q L V S R - Y K L V S D S F M L L L G S N W Y L G D T N W Y L I L S C Y Y L D P I G I - V I Q I G I - . . . . . . 45923 ATCCTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACTGTGCCAACACCAACAC I L T L F R R W L E L E Q Q L C Q H Q H S S L Y F A D G - N - S N N C A N T N T Y P H S I S Q M V R T R A T T V P T P T . . . . 45863 CGGCAAGACAGGGTGCGTCTAAGCCAACCATTGGGGCTGT R Q D R V R L S Q P L G L G K T G C V - A N H W G C P A R Q G A S K P T I G A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 45824 ACAGCCCCAATGGTTGGCTTAGACGCACCCTGTCTTGCCGGTGTTGGTGTTGGCACAGTT T A P M V G L D A P C L A G V G V G T V Q P Q W L A - T H P V L P V L V L A Q L S P N G W L R R T L S C R C W C W H S . . . . . . 45884 GTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAGGATATCAGATACCAATTTGTATC V A L V L T I C E I E - G Y Q I P I C I L L - F - P S A K - S E D I R Y Q F V S C C S S S N H L R N R V R I S D T N L Y . . . . 45944 ACCTAGATACCAATTGGATCCAAGTAATAGCATGAAAGAA T - I P I G S K - - H E R P R Y Q L D P S N S M K E H L D T N W I Q V I A - K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (49529 49499,46417 45985) SCR (e 0.710 d 0.900 a 0.807,e 0.838) Exon 1 49529 49499 ( 31 n); score: 0.710 Intron 1 49498 46418 (3081 n); Pd: 0.900 Pa: 0.807 Exon 2 46417 45985 ( 433 n); score: 0.838 PGS (46415 45985) SGN-E392027- PGS (49529 49499,46417 46137) SGN-E546219- 3-phase translation of AGS-5 (-strand): . . . . : . . 49529 AAAAAATGAAGTGAAATATGCAGCTATGAAA : TGCAGCAAGCGTGCCACCGACTTCGACTC K K - S E I C S Y E : M Q Q A C H R L R L K N E V K Y A A M K : C S K R A T D F D S K M K - N M Q L - N : A A S V P P T S T . . . . . . 46388 GTCCTCAGATCTAGCCAGTCTTCAGCACATCAGAGTTCAGGGTGGGCTATTATTTCTAGC V L R S S Q S S A H Q S S G W A I I S S S S D L A S L Q H I R V Q G G L L F L A R P Q I - P V F S T S E F R V G Y Y F - . . . . . . 46328 TCGTGCTGCGTTCTCTCATTCACGTCTTGATGTCTTGAAGTTCGGACATGGACCATCTTT S C C V L S F T S - C L E V R T W T I F R A A F S H S R L D V L K F G H G P S F L V L R S L I H V L M S - S S D M D H L . . . . . . 46268 TTACTATTTTTAGCTTCTTAAATACTCTTAGATTTAGAAATTTGAGGATAGATGTTCTTG L L F L A S - I L L D L E I - G - M F L Y Y F - L L K Y S - I - K F E D R C S W F T I F S F L N T L R F R N L R I D V L . . . . . . 46208 GTGTGATGACTTCCAGATTTTGAGAATAATAAGTATTAAAATTTAGAAGTTTATTTAATT V - - L P D F E N N K Y - N L E V Y L I C D D F Q I L R I I S I K I - K F I - L G V M T S R F - E - - V L K F R S L F N . . . . . . 46148 GATTTCGTTAATGAGCTTTGGATCTTCCACATTTTTTTTTACTATTTATAATTGATATAC D F V N E L W I F H I F F Y Y L - L I Y I S L M S F G S S T F F F T I Y N - Y T - F R - - A L D L P H F F L L F I I D I . . . . . . 46088 CGGTAAATGTTGGGGTTTAGATTTGTTGGTTCGCTCACCTAGGAGAATAAGTGTGGGTGC R - M L G F R F V G S L T - E N K C G C G K C W G L D L L V R S P R R I S V G A P V N V G V - I C W F A H L G E - V W V . . . . . 46028 CACTCGCGACTCGTTTTGGGTCGTGACAAACTTGGTATCAGAGC H S R L V L G R D K L G I R T R D S F W V V T N L V S E P L A T R F G S - Q T W Y Q S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-6 (46998 46775,46704 46322) SCR (e 0.779 d 0.000 a 0.000,e 0.826) Exon 1 46998 46775 ( 224 n); score: 0.779 Intron 1 46774 46705 ( 70 n); Pd: 0.000 Pa: 0.000 Exon 2 46704 46322 ( 383 n); score: 0.826 PGS (46725 46322) SGN-E246710+ PGS (46597 46348) SGN-E353206+ PGS (46998 46775,46704 46596) SGN-E252547+ 3-phase translation of AGS-6 (-strand): . . . . . . 46998 TTGTAAAGTCTTCTATATGCTTGATTGTGTGTTTGTATGTTGTGATTGTGTAATTGTGGT L - S L L Y A - L C V C M L - L C N C G C K V F Y M L D C V F V C C D C V I V V V K S S I C L I V C L Y V V I V - L W . . . . . . 46938 GGATTAGAATTATAAGATTGTTGAAAATCCTAACTTAAATCCTCTCTAATAAGATGACGC G L E L - D C - K S - L K S S L I R - R D - N Y K I V E N P N L N P L - - D D A W I R I I R L L K I L T - I L S N K M T . . . . . . 46878 CTTGACATAAAGAAGACTTGATGAAATAAAATAATGAGATAAATAGATCAATGTGTCACG L D I K K T - - N K I M R - I D Q C V T L T - R R L D E I K - - D K - I N V S R P - H K E D L M K - N N E I N R S M C H . . . . . : . 46818 TTCCGACACGATAACATTGGATCGAAGTGTCACGTTCCGACACG : ATAATAATAAAGAGAA F R H D N I G S K C H V P T R : - - - R E S D T I T L D R S V T F R H : D N N K E N V P T R - H W I E V S R S D T : I I I K R . . . . . . 46688 TGAATCTTGAATTATGTTAATATACTCAAATTCGAAGAATCTATTTCCCAAATGAGTATG - I L N Y V N I L K F E E S I S Q M S M E S - I M L I Y S N S K N L F P K - V W M N L E L C - Y T Q I R R I Y F P N E Y . . . . . . 46628 GTGTGGAGGCTTGAGACCTCATAGGTGTGCTTGGTGTTGTTGCCAATGGTTCTTGTACTT V W R L E T S - V C L V L L P M V L V L C G G L R P H R C A W C C C Q W F L Y L G V E A - D L I G V L G V V A N G S C T . . . . . . 46568 GTTGATTGCCACTTGTTAAGTATTATGGTTGATTTTATATTATTATTCAGTATATATTGC V D C H L L S I M V D F I L L F S I Y C L I A T C - V L W L I L Y Y Y S V Y I A C - L P L V K Y Y G - F Y I I I Q Y I L . . . . . . 46508 TTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACGTGTTTCTTGTACTGACCCCTA F L F - V G R - Y L L S T C F L Y - P L F Y F E L A D D T Y S V R V S C T D P Y L S I L S W P M I P T Q Y V F L V L T P . . . . . . 46448 CTTGTAACTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAGCGTGCCACCGACTTCGACTC L V T F F F V I C G V Q Q A C H R L R L L - L S S L L F V E C S K R A T D F D S T C N F L L C Y L W S A A S V P P T S T . . . . . . 46388 GTCCTCAGATCTAGCCAGTCTTCAGCACATCAGAGTTCAGGGTGGGCTATTATTTCTAGC V L R S S Q S S A H Q S S G W A I I S S S S D L A S L Q H I R V Q G G L L F L A R P Q I - P V F S T S E F R V G Y Y F - . 46328 TCGTGCT S C R A L V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 56627 49944 AGS-1 (50111 49944) SCR (e 0.940) Exon 1 50111 49944 ( 168 n); score: 0.940 PGS (50111 49944) SGN-E308440- 3-phase translation of AGS-1 (-strand): . . . . . . 50111 TTTTTTTACGAAACCAAATTTTATAAATATCAATGATAACAACTGCACTCAATAAAATAA F F Y E T K F Y K Y Q - - Q L H S I K - F F T K P N F I N I N D N N C T Q - N K F L R N Q I L - I S M I T T A L N K I . . . . . . 50051 AACGTGTTTCTAACATTCAAAACAACACAATAACAAATGTAACATTACGAAATCATTGTT N V F L T F K T T Q - Q M - H Y E I I V T C F - H S K Q H N N K C N I T K S L F K R V S N I Q N N T I T N V T L R N H C . . . . . 49991 TTTGCACAGGATAATTTAAATATGTCTTTCTATTGTGTCCAACTTGAC F A Q D N L N M S F Y C V Q L D L H R I I - I C L S I V S N L F C T G - F K Y V F L L C P T - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 49944 GTCAAGTTGGACACAATAGAAAGACATATTTAAATTATCCTGTGCAAAAACAATGATTTC V K L D T I E R H I - I I L C K N N D F S S W T Q - K D I F K L S C A K T M I S Q V G H N R K T Y L N Y P V Q K Q - F . . . . . . 50004 GTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAGAAACACGTTTTATTTTATTGA V M L H L L L C C F E C - K H V L F Y - - C Y I C Y C V V L N V R N T F Y F I E R N V T F V I V L F - M L E T R F I L L . . . . . 50064 GTGCAGTTGTTATCATTGATATTTATAAAATTTGGTTTCGTAAAAAAA V Q L L S L I F I K F G F V K K C S C Y H - Y L - N L V S - K S A V V I I D I Y K I W F R K K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (53910 52235,51071 51050,50037 50014) SCR (e 0.884 d 0.000 a 0.000,e 0.682 d 0.901 a 0.000,e 0.750) Exon 1 53910 52235 (1676 n); score: 0.884 Intron 1 52234 51072 (1163 n); Pd: 0.000 Pa: 0.000 Exon 2 51071 51050 ( 22 n); score: 0.682 Intron 2 51049 50038 (1012 n); Pd: 0.901 Pa: 0.000 Exon 3 50037 50014 ( 24 n); score: 0.750 PGS (52596 52235,51071 51050,50037 50014) SGN-E578076- PGS (52853 52240) SGN-E347579- PGS (52920 52332) SGN-E349726- PGS (52733 52332) SGN-E357559- PGS (53147 52815) SGN-E357033+ PGS (53056 52825) SGN-E391780- PGS (53300 52826) SGN-E246710- PGS (53439 52840) SGN-E546506+ PGS (53200 53047) SGN-E209683- PGS (53851 53125) SGN-E351546- PGS (53777 53125) SGN-E356696- PGS (53702 53125) SGN-E356206- PGS (53470 53196) SGN-E222578+ PGS (53869 53206) SGN-E392027+ PGS (53607 53210) SGN-E542084+ PGS (53607 53218) SGN-E370357+ PGS (53439 53218) SGN-E373117- PGS (53439 53218) SGN-E373116+ PGS (53445 53236) SGN-E216150+ PGS (53439 53254) SGN-E298638- PGS (53455 53285) SGN-E352844- PGS (53455 53285) SGN-E368629- PGS (53446 53285) SGN-E238551- PGS (53910 53625) SGN-E355114- 3-phase translation of AGS-2 (-strand): . . . . . . 53910 CCACAGCCCCAGGGGCTGGCTCAGTTGTTTCTTGTCTGGCCGGTGTCGCTGCTGGCGCGG P Q P Q G L A Q L F L V W P V S L L A R H S P R G W L S C F L S G R C R C W R G T A P G A G S V V S C L A G V A A G A . . . . . . 53850 TCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGT S L L - F - P S A K - S E D G Q I P I C R C S S S N H L R N R V K M V R Y Q F V V V A L V L T I C E I E - R W S D T N L . . . . . . 53790 ATCACCTAGATACCAATTGGATCCAAGTAATAGCACGAAAGAAAGAATGAAAGAGTGAAA I T - I P I G S K - - H E R K N E R V K S P R Y Q L D P S N S T K E R M K E - N Y H L D T N W I Q V I A R K K E - K S E . . . . . . 53730 TTTTCCTAAAGTCCTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTA F S - S P I A S Q G K V K A S P Y R S L F P K V L - P L K E K - R R P P T V P - I F L K S Y S L S R K S K G V P L P F L . . . . . . 53670 AGACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAA R L Y - T C S C V M R P T N L M L - Y Q D S T R P V L V - - D Q R T - C S D T K K T L L D L F L C D E T N E P N A L I P . . . . . . 53610 GTTTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACGCTCCTATGTGAGC V C H D P N P G R D W H P H L R S Y V S F V T T Q I R A A T G T H T Y A P M - A S L S R P K S G P R L A P T L T L L C E . . . . . . 53550 GAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAG E P T N L N L N I S R - Y Q H K V M R K N Q P I - T L T F Q G N I N I K - C G R R T N Q S K P - H F K V I S T - S N A E . . . . . . 53490 ACTTAAACTCATTAATAAAATCAATAACTATTATTATTCAACATCTATTATTCCCCAAAA T - T H - - N Q - L L L F N I Y Y S P K L K L I N K I N N Y Y Y S T S I I P Q N D L N S L I K S I T I I I Q H L L F P K . . . . . . 53430 TCTGGAAGTCATCATCACAAGAACATCTACTTTAAACTACTAATTCTAAGAGTTTCTAAG S G S H H H K N I Y F K L L I L R V S K L E V I I T R T S T L N Y - F - E F L R I W K S S S Q E H L L - T T N S K S F - . . . . . . 53370 AAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGGAGTTCAAGGCATCAAGACATGAAG K L K I H K K L V H A G S S R H Q D M K S - K Y I R S - S M P G V Q G I K T - R E A K N T - E A S P C R E F K A S R H E . . . . . . 53310 GAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAGATCCGGTGTGACGAAGA E K I Q S K L E A L A H P E D P V - R R R R S S P S - K H - L T L K I R C D E D G E D P V Q A R S I S S P - R S G V T K . . . . . . 53250 CTGGCTAGAATTACTGTTGAGTTGAGGACGACGGCACGTTTGTTGCACTCCACAAATAAC L A R I T V E L R T T A R L L H S T N N W L E L L L S - G R R H V C C T P Q I T T G - N Y C - V E D D G T F V A L H K - . . . . . . 53190 AAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATC K K K N I K V G V S T K H G Y - V D I I R R K T - K - G S V Q N T G T E - I S S Q E E K H K S R G Q Y K T R V L S R Y H . . . . . . 53130 GGCCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCATAAACTCAACTATGATAC G Q L K I E N S I Y Q V I S - T Q L - Y A N S K - K T V Y T K - Y H K L N Y D T R P T Q N R K Q Y I P S N I I N S T M I . . . . . . 53070 TCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTCCACTCACGA S T C S N N K H Y I I N N Y R Q V H S R Q H V A T T S T I S L T I T V K S T H E L N M - Q Q Q A L Y H - Q L P S S P L T . . . . . . 53010 GGAATCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTA G I K P Q Y H T H L G I M F I R L S I L E S S P N T I L I W E S C S L D - V Y - R N Q A P I P Y S F G N H V H - I E Y I . . . . . . 52950 ACATCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAT T S R F I I F I S L V S V R D T P L P H H Q D S L S L F L L C R Y V T L R S L I N I K I H Y L Y F S C V G T - H S A P S . . . . . . 52890 ATTCATTATTCCTCTTGTGTCGGTTCGTAACACCCCGATCCCCTAATTCTACGTGTCGAT I H Y S S C V G S - H P D P L I L R V D F I I P L V S V R N T P I P - F Y V S I Y S L F L L C R F V T P R S P N S T C R . . . . . . 52830 TCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCT S - H P I P - F Y V S V R D T R S P N S R D T R S P N S T C R F V T P D P L I L F V T P D P L I L R V G S - H P I P - F . . . . . . 52770 ACGTGTCGATTCATGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATC T C R F M T P D P L N L R V G S - H P I R V D S - H P I P - I Y V S V R D T R S Y V S I H D T R S P K S T C R F V T P D . . . . . . 52710 CCCTAATTCTACGTGTCGGTTAGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTG P - F Y V S V S D T R S P N S T C R F V P N S T C R L V T P D P L I L R V G S - P L I L R V G - - H P I P - F Y V S V R . . . . . . 52650 ACACCCGATCCACTAATATCATTCTGTAAATCATCAAGCCTTCTTTATACCAAGGCATCC T P D P L I S F C K S S S L L Y T K A S H P I H - Y H S V N H Q A F F I P R H P D T R S T N I I L - I I K P S L Y Q G I . . . . . . 52590 TCAATCCCATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAA S I P L L - F I K P S S I P R H H H - - Q S H Y F N S S S L L L Y Q G I I I N N L N P I T L I H Q A F F Y T K A S S L I . . . . . . 52530 TGTATATTAAAGTTTCTTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTAT C I L K F L F K I W D S I F S S C L S Y V Y - S F F S R F G I Q Y F H H A Y L I M Y I K V S F Q D L G F N I F I M L I L . . . . . . 52470 CACAATCACATAGTCATATTCATGCAAGCGTACAATTAAGCATATAGCAGGGTTTACAAT H N H I V I F M Q A Y N - A Y S R V Y N T I T - S Y S C K R T I K H I A G F T I S Q S H S H I H A S V Q L S I - Q G L Q . . . . . . 52410 ATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCAT I I N T Y H S L L R V Y Y E Y R K R N H L S I H I I L Y - E F T T N I V R E T I Y Y Q Y I S F S I K S L L R I S - E K P . . . . . . 52350 AACCTACCTCCACCGAAGAATTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCC N L P P P K N - I K Q E F S Q S F V S P T Y L H R R I E S S K N F P K A L F L P - P T S T E E L N Q A R I F P K L C F S . . . . . . : 52290 TTCTCGTTCGATTCTCTCTCTCTCTCTCCTGTTCTTTCTATTTTCTTTATTCAAAC : ATCC F S F D S L S L S P V L S I F F I Q T : S S R S I L S L S L L F F L F S L F K : H P L L V R F S L S L S C S F Y F L Y S N : I . . : . . . 51067 TAAGGAGATTCACAAGAG : ATTCAAAACAACACAATAACAAAT - G D S Q E : I Q N N T I T N K E I H K R : F K T T Q - Q L R R F T R : D S K Q H N N K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-5_AGS-2_PPS_2 (53740 53528) (frame '0'; 210 bp, 70 residues) 1 KSEIFLKSYS LSRKSKGVPL PFLKTLLDLF LCDETNEPNA LIPSLSRPKS GPRLAPTLTL 61 LCERTNQSKP - >C08HBa0027D09.1-_PGL-5_AGS-2_PPS_1 (53073 52861) (frame '1'; 210 bp, 70 residues) 1 YSTCSNNKHY IINNYRQVHS RGIKPQYHTH LGIMFIRLSI LTSRFIIFIS LVSVRDTPLP 61 HIHYSSCVGS - >C08HBa0027D09.1-_PGL-5_AGS-2_PPS_3 (53463 53257) (frame '1'; 204 bp, 68 residues) 1 LLLFNIYYSP KSGSHHHKNI YFKLLILRVS KKLKIHKKLV HAGSSRHQDM KEKIQSKLEA 61 LAHPEDPV- >C08HBa0027D09.1-_PGL-5_AGS-2_PPS_4 (52621 52424) (frame '0'; 195 bp, 65 residues) 1 IIKPSLYQGI LNPITLIHQA FFYTKASSLI MYIKVSFQDL GFNIFIMLIL SQSHSHIHAS 61 VQLSI- AGS-3 (50655 50615,50391 50218) SCR (e 0.780 d 0.000 a 0.000,e 0.859) Exon 1 50655 50615 ( 41 n); score: 0.780 Intron 1 50614 50392 ( 223 n); Pd: 0.000 Pa: 0.000 Exon 2 50391 50218 ( 174 n); score: 0.859 PGS (50655 50615,50391 50218) SGN-E352130+ PGS (50655 50615,50391 50253) SGN-E350862+ 3-phase translation of AGS-3 (-strand): . . . . . : . 50655 TTGTATAAAATATATTTAACTATATATATATATATCATAAT : ATTTTATGAATGACAGTAA L Y K I Y L T I Y I Y I I I : F Y E - Q - C I K Y I - L Y I Y I S - : Y F M N D S K V - N I F N Y I Y I Y H N : I L - M T V . . . . . . 50372 AGTTCAATGTATATATATAATGTATAAACATTGTATGAATTATGAATCTCATATCGAACT S S M Y I Y N V - T L Y E L - I S Y R T V Q C I Y I M Y K H C M N Y E S H I E L K F N V Y I - C I N I V - I M N L I S N . . . . . . 50312 TGGATATATGTAACAGAAACAAATGGTACATAAATGAACATTGTATGAATATTGTATGAA W I Y V T E T N G T - M N I V - I L Y E G Y M - Q K Q M V H K - T L Y E Y C M N L D I C N R N K W Y I N E H C M N I V - . . . . 50252 CATTGTATTAATACTATATGAACATTTTATGAATG H C I N T I - T F Y E I V L I L Y E H F M N T L Y - Y Y M N I L - M Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (52937 52915,52297 51754) SCR (e 0.739 d 0.958 a 0.000,e 0.955) Exon 1 52937 52915 ( 23 n); score: 0.739 Intron 1 52914 52298 ( 617 n); Pd: 0.958 Pa: 0.000 Exon 2 52297 51754 ( 544 n); score: 0.955 PGS (51865 51754) SGN-E356257+ PGS (52937 52915,52297 51790) SGN-E349296- PGS (52238 51927) SGN-E356257- 3-phase translation of AGS-4 (-strand): . . . : . . . 52937 TTATCTTTATTTCTCTTGTGTCG : TTCTCCCTTCTCGTTCGATTCTCTCTCTCTCTCTCCT L S L F L L C R : S P F S F D S L S L S P Y L Y F S C V : V L P S R S I L S L S L L I F I S L V S : F S L L V R F S L S L S . . . . . . 52260 GTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAG V L S I F F I Q T L F L L P - L V Y N - F F L F S L F K P S F F Y P N - Y I I R C S F Y F L Y S N P L S F T L I S I - L . . . . . . 52200 GAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTC E - K M A I I P H - L T - G Y L F - P L N K R W Q - Y P T N - L R V T S F N P S G I K D G N N T P L I N L G L P L L T P . . . . . . 52140 AAGAATTTTAGTTATTAATATAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCAA K N F S Y - Y K P T K S I I K E R I V Q R I L V I N I N P R N L - L R K E - S K Q E F - L L I - T H E I Y N - G K N S P . . . . . . 52080 AAACGTCCTTTAAAACTTCACCAGAAATCCGACTCTGCCTGGGATTTGTGCAACCTGTGA K R P L K L H Q K S D S A W D L C N L - N V L - N F T R N P T L P G I C A T C D K T S F K T S P E I R L C L G F V Q P V . . . . . . 52020 CGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCATGTCGTCGCAAAGTTCAGAGAATGGAT R A V V P A T V R P A C R R K V Q R M D G P S C L R R S V L H V V A K F R E W I T G R R A C D G P S C M S S Q S S E N G . . . . . . 51960 TTTCACTGAAGTCTCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTTAGAGAGTCG F H - S L C D G P S C H S V T K F R E S F T E V S V T V R P A I P S R S L E S R F S L K S L - R S V L P F R H E V - R V . . . . . . 51900 ATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCC I F S T Q F Q I F - V F - N E T L R R S F S V P N F R F S K C F E T R P C D G P D F Q Y P I S D F L S V L K R D P A T V . . . . . . 51840 GTCGTGCCCATGACGTTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGA V V P M T F R R G V R R F C Q F F Q N - S C P - R S V V G S V A S A S F S R I E R R A H D V P S W G P S L L P V F P E L . . . 51780 AGTCTGTTGCTCAAAACGACTAAACGG S L L L K T T K R V C C S K R L N K S V A Q N D - T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-5_AGS-4_PPS_1 (52067 51828) (frame '2'; 237 bp, 79 residues) 1 NFTRNPTLPG ICATCDGPSC LRRSVLHVVA KFREWIFTEV SVTVRPAIPS RSLESRFSVP 61 NFRFSKCFET RPCDGPSCP- AGS-5 (52525 52043) SCR (e 0.705) Exon 1 52525 52043 ( 483 n); score: 0.705 PGS (52525 52043) SGN-E546548- 3-phase translation of AGS-5 (-strand): . . . . . . 52525 ATTAAAGTTTCTTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAA I K V S F Q D L G F N I F I M L I L S Q L K F L F K I W D S I F S S C L S Y H N - S F F S R F G I Q Y F H H A Y L I T . . . . . . 52465 TCACATAGTCATATTCATGCAAGCGTACAATTAAGCATATAGCAGGGTTTACAATATTAT S H S H I H A S V Q L S I - Q G L Q Y Y H I V I F M Q A Y N - A Y S R V Y N I I I T - S Y S C K R T I K H I A G F T I L . . . . . . 52405 CAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCT Q Y I S F S I K S L L R I S - E K P - P N T Y H S L L R V Y Y E Y R K R N H N L S I H I I L Y - E F T T N I V R E T I T . . . . . . 52345 ACCTCCACCGAAGAATTGAATCAAGCAAGAATTTTCCCAAAGCTTTGTTTCTCCCTTCTC T S T E E L N Q A R I F P K L C F S L L P P P K N - I K Q E F S Q S F V S P F S Y L H R R I E S S K N F P K A L F L P S . . . . . . 52285 GTTCGATTCTCTCTCTCTCTCTCCTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCT V R F S L S L S C S F Y F L Y S N P L S F D S L S L S P V L S I F F I Q T L F L R S I L S L S L L F F L F S L F K P S F . . . . . . 52225 TTTACCCTAATTAGTATATAATTAGGAATAAAAGATGGCAATAATACCCCACTAATTAAC F T L I S I - L G I K D G N N T P L I N L P - L V Y N - E - K M A I I P H - L T F Y P N - Y I I R N K R W Q - Y P T N - . . . . . . 52165 TTAGGGTTACCTCTTTTAACCCCTCAAGAATTTTAGTTATTAATATAAACCCACGAAATC L G L P L L T P Q E F - L L I - T H E I - G Y L F - P L K N F S Y - Y K P T K S L R V T S F N P S R I L V I N I N P R N . . . . . . 52105 TATAATTAAGGAAAGAATAGTCCAAAAACGTCCTTTAAAACTTCACCAGAAATCCGACTC Y N - G K N S P K T S F K T S P E I R L I I K E R I V Q K R P L K L H Q K S D S L - L R K E - S K N V L - N F T R N P T . 52045 TGC C L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-5 (+strand): . . . . . . 52043 GCAGAGTCGGATTTCTGGTGAAGTTTTAAAGGACGTTTTTGGACTATTCTTTCCTTAATT A E S D F W - S F K G R F W T I L S L I Q S R I S G E V L K D V F G L F F P - L R V G F L V K F - R T F L D Y S F L N . . . . . . 52103 ATAGATTTCGTGGGTTTATATTAATAACTAAAATTCTTGAGGGGTTAAAAGAGGTAACCC I D F V G L Y - - L K F L R G - K R - P - I S W V Y I N N - N S - G V K R G N P Y R F R G F I L I T K I L E G L K E V T . . . . . . 52163 TAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCCTAATTATATACTAATTAGGGT - V N - W G I I A I F Y S - L Y T N - G K L I S G V L L P S F I P N Y I L I R V L S - L V G Y Y C H L L F L I I Y - L G . . . . . . 52223 AAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAGGAGAGAGAGAGAGAGAATCG K R K R V - I K K I E R T G E R E R E S K E R G F E - R K - K E Q E R E R E N R - K K E G L N K E N R K N R R E R E R I . . . . . . 52283 AACGAGAAGGGAGAAACAAAGCTTTGGGAAAATTCTTGCTTGATTCAATTCTTCGGTGGA N E K G E T K L W E N S C L I Q F F G G T R R E K Q S F G K I L A - F N S S V E E R E G R N K A L G K F L L D S I L R W . . . . . . 52343 GGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTA G R L W F L L R Y S - - T L N R E - Y V V G Y G F S Y D I R S K L L I E N D M Y R - V M V S L T I F V V N S - - R M I C . . . . . . 52403 TTGATAATATTGTAAACCCTGCTATATGCTTAATTGTACGCTTGCATGAATATGACTATG L I I L - T L L Y A - L Y A C M N M T M - - Y C K P C Y M L N C T L A - I - L C I D N I V N P A I C L I V R L H E Y D Y . . . . . . 52463 TGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTT - L - - D K H D E N I E S Q I L K R N F D C D K I S M M K I L N P K S - K E T L V I V I R - A - - K Y - I P N L E K K L . 52523 AAT N - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-6 (53342 52915,52838 52626,52577 52531) SCR (e 0.782 d 0.958 a 0.000,e 0.871 d 0.851 a 0.000,e 0.915) Exon 1 53342 52915 ( 428 n); score: 0.782 Intron 1 52914 52839 ( 76 n); Pd: 0.958 Pa: 0.000 Exon 2 52838 52626 ( 213 n); score: 0.871 Intron 2 52625 52578 ( 48 n); Pd: 0.851 Pa: 0.000 Exon 3 52577 52531 ( 47 n); score: 0.915 PGS (53342 52915,52838 52626,52577 52531) SGN-E241789+ 3-phase translation of AGS-6 (-strand): . . . . . . 53342 ATGCCGGGAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCAT M P G V Q G I K T - R R R S S P S - K H C R E F K A S R H E G E D P V Q A R S I A G S S R H Q D M K E K I Q S K L E A . . . . . . 53282 TAGCTCACCCTGAAGATCCGGTGTGACGAAGACTGGCTAGAATTACTGTTGAGTTGAGGA - L T L K I R C D E D W L E L L L S - G S S P - R S G V T K T G - N Y C - V E D L A H P E D P V - R R L A R I T V E L R . . . . . . 53222 CGACGGCACGTTTGTTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCA R R H V C C T P Q I T R R K T - K - G S D G T F V A L H K - Q E E K H K S R G Q T T A R L L H S T N N K K K N I K V G V . . . . . . 53162 GTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATAT V Q N T G T E - I S S A N S K - K T V Y Y K T R V L S R Y H R P T Q N R K Q Y I S T K H G Y - V D I I G Q L K I E N S I . . . . . . 53102 ACCAAGTAATATCATAAACTCAACTATGATACTCAACATGTAGCAACAACAAGCACTATA T K - Y H K L N Y D T Q H V A T T S T I P S N I I N S T M I L N M - Q Q Q A L Y Y Q V I S - T Q L - Y S T C S N N K H Y . . . . . . 53042 TCATTAACAATTACCGTCAAGTCCACTCACGAGGAATCAAGCCCCAATACCATACTCATT S L T I T V K S T H E E S S P N T I L I H - Q L P S S P L T R N Q A P I P Y S F I I N N Y R Q V H S R G I K P Q Y H T H . . . . . . 52982 TGGGAATCATGTTCATTAGATTGAGTATATTAACATCAAGATTCATTATCTTTATTTCTC W E S C S L D - V Y - H Q D S L S L F L G N H V H - I E Y I N I K I H Y L Y F S L G I M F I R L S I L T S R F I I F I S . : . . . . . 52922 TTGTGTCG : GTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACAC L C R : C R F V T P D P L I L R V G S - H C V : G V D S - H P I P - F Y V S V R D T L V S : V S I R D T R S P N S T C R F V T . . . . . . 52786 CCGATCCCCTAATTCTACGTGTCGATTCATGACACCCGATCCCCTAAATCTACGTGTCGG P I P - F Y V S I H D T R S P K S T C R R S P N S T C R F M T P D P L N L R V G P D P L I L R V D S - H P I P - I Y V S . . . . . . 52726 TTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTAGTGACACCCGATCCCCTAATTC F V T P D P L I L R V G - - H P I P - F S - H P I P - F Y V S V S D T R S P N S V R D T R S P N S T C R L V T P D P L I . . . . . : . 52666 TACGTGTCGGTTCGTGACACCCGATCCACTAATATCATTCT : TTTAATTCATCAAGCCTTC Y V S V R D T R S T N I I L : L I H Q A F T C R F V T P D P L I S F : F - F I K P S L R V G S - H P I H - Y H S : F N S S S L . . . 52558 TTCTATACCAAGGCATCATCATTAATAA F Y T K A S S L I S I P R H H H - - L L Y Q G I I I N Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-5_AGS-6_PPS_1 (53073 52915,52838 52755) (frame '0'; 240 bp, 80 residues) 1 YSTCSNNKHY IINNYRQVHS RGIKPQYHTH LGIMFIRLSI LTSRFIIFIS LVSVSIRDTR 61 SPNSTCRFVT PDPLILRVDS - AGS-7 (56627 53919) SCR (e 0.922) Exon 1 56627 53919 (2709 n); score: 0.922 PGS (54349 53919) SGN-E352180+ PGS (54537 53984) SGN-E329287- PGS (54707 53988) SGN-E356614+ PGS (54704 54041) SGN-E352401+ PGS (54902 54198) SGN-E349404+ PGS (54902 54230) SGN-E351625+ PGS (54902 54295) SGN-E357065+ PGS (54902 54387) SGN-E352365+ PGS (55344 54555) SGN-E356912+ PGS (55268 54571) SGN-E356209+ PGS (55422 54663) SGN-E214046+ PGS (55342 54809) SGN-E353805+ PGS (55428 54870) SGN-E244046+ PGS (55811 55269) SGN-E355026+ PGS (56038 55277) SGN-E355244+ PGS (55633 55306) SGN-E352716+ PGS (55995 55335) SGN-E352117- PGS (56038 55378) SGN-E351414+ PGS (55787 55404) SGN-E242765+ PGS (56107 55449) SGN-E355232+ PGS (56556 55878) SGN-E368762+ PGS (56627 55915) SGN-E379315+ PGS (56084 55959) SGN-E578271+ PGS (56627 56032) SGN-E375319+ PGS (56242 56092) SGN-E578078+ PGS (56627 56102) SGN-E204434+ PGS (56556 56198) SGN-E240817+ 3-phase translation of AGS-7 (-strand): . . . . . . 56627 GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGA E S L D K S A V V A S - P N K A P Y F - N P L T N R R - - L A N P T K L L I S D I P - Q I G G S S - L T Q Q S S L F L . . . . . . 56567 CACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCAT H I S R S Y P I L H C L N L R R I H H H T L V G L T Q F F T V S I L E G S T I I T H - - V L P N S S L S Q S - K D P P S . . . . . . 56507 TCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTT S I L R N H V S Q E G H C I - P K L T L P S L E T T C P K K D T A S S Q N S H L F H P - K P R V P R R T L H L A K T H T . . . . . . 56447 AGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTC R E L G I K L F L P Q H F Q Y H S Q M L E N L A - S F F S L N I S N T I L K C S - R T W H K A F S P S T F P I P F S N A . . . . . . 56387 TTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAA F M F L L A L - V Y Q Y I I N K Y D H E S C S F L L F E Y T N I S S I N T I T K L H V P S C S L S I P I Y H Q - I R S R . . . . . . 56327 GAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAACGCAGCAGGGGCATT E V Q I W L K N P I H Q A H E R S R G I R S K Y G L K I P F I K L M N A A G A F R G P N M A - K S H S S S S - T Q Q G H . . . . . . 56267 CGTAAGACCAAAAGACATCACTACAAATTCGTAATTCCCATACCTCGTTTGAAAAGCAGT R K T K R H H Y K F V I P I P R L K S S V R P K D I T T N S - F P Y L V - K A V S - D Q K T S L Q I R N S H T S F E K Q . . . . . . 56207 CTTGGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTT L G H I R C P Y F Q L M I T G S Q V N L L G T S V A R I F N - - - P D L K S I L S W A H P L P V F S I D D N R I S S Q S . . . . . . 56147 AGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATA R E D T S T L - L I E Q I I N A G K R I E K T Q A P C N - S N K S S M R G R G Y - R R H K H L V T D R T N H Q C G E E D . . . . . . 56087 CTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCC L V L Y G Y L V - L S V V Y T H S K T P L F F M V T L F S Y L - S I H I R K L P T C S L W L P C L V I C S L Y T F E N S . . . . . . 56027 ATCCTTCTTCTTTACAAACAAAACCGAAGCACCCCAAGGGGATGCACTTGGTCTAATGAA I L L L Y K Q N R S T P R G C T W S N E S F F F T N K T E A P Q G D A L G L M K H P S S L Q T K P K H P K G M H L V - - . . . . . . 55967 GCCTTTATTCAATAATTCTTGAAGTTGTGACTTTAACTCTCTTAACTCCGCGGGAGCCAT A F I Q - F L K L - L - L S - L R G S H P L F N N S - S C D F N S L N S A G A I S L Y S I I L E V V T L T L L T P R E P . . . . . . 55907 TCTATAAGGGGGTACAGAGATGGGACAAGTACCGGGTTCAAGATCAATACAGAAGTCAAT S I R G Y R D G T S T G F K I N T E V N L - G G T E M G Q V P G S R S I Q K S I F Y K G V Q R W D K Y R V Q D Q Y R S Q . . . . . . 55847 ATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGAAC I P I R W H T R K I C R E H I Q K L T N S L S G G I P G R S A G N T S K N S R T Y P Y P V A Y Q E D L Q G T H P K T H E . . . . . . 55787 TACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAA Y - N R L N R R Y L G S V I L E M C Q E T E T D S I E G T W V V S S L R C A K K L L K P T Q S K V L G - C H P - D V P R . . . . . . 55727 AGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGTGGACCGG S - T P F T N H F L S T K K G D D V D R A K H P L L I I F L A R R K E T M W T G K L N T L Y - S F S - H E E R R R C G P . . . . . . 55667 ATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCAC I G S V V T L P H - R V C P R L G - R H L E V - S P S H T N G S V P G L A N V T D W K C S H P P T L T G L S Q A W L T S . . . . . . 55607 CGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAAT R F S I T I Q D C K L R R K P S H T Q N V L A L Q S K I A N C G E S Q V I P R I P F - H Y N P R L Q I A E K A K S Y P E . . . . . . 55547 CACATCAAAATCGTCCATTTCTAAGATAACCAAATCTACATAGGTGTTGCTCCCCACAAA H I K I V H F - D N Q I Y I G V A P H K T S K S S I S K I T K S T - V L L P T K S H Q N R P F L R - P N L H R C C S P Q . . . . . . 55487 GTTCACCAAATAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGA V H Q I R P I H L F N Y H R L T H R S R F T K - D L Y T F S T T T D S P T G V E S S P N K T Y T P F Q L P Q T H P P E - . . . . . . 55427 AACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGA N M N R H I K - F T M - I - T I S K - G T - I G I S S N S Q C K F R P L A N E E K H E - A Y Q V I H N V N L D H - Q M R . . . . . . 55367 AGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAAC R Y I R K R G S R I K Q Y R S H A I T N D T - E N V D P G S N N T E A M Q S Q T K I H K K T W I Q D Q T I Q K P C N H K . . . . . . 55307 AAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGC K K I T C D D S I R C L R F R P P R E S R R L P V M T A S D A S A S D R P G K A Q E D Y L - - Q H Q M P P L Q T A Q G K . . . . . . 55247 GTAACAATGGGCCCTATCATTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGC V T M G P I I R L S V A P T M L - C S G - Q W A L S F V C P L P L P C C D V V A R N N G P Y H S S V R C P Y H V V M - W . . . . . . 55187 CCCAGTTTGCCCATTACCTCTGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTCC P S L P I T S A V L V T T I T S T T T S P V C P L P L P F W - P P L P R P P R P P Q F A H Y L C R S G D H H Y L D H H V . . . . . . 55127 TCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACT S R I T A S T M T T S T S S Y W G S I T P E - R P L P - P P L P L A I G G L - L L Q N N G L Y H D H L Y L - L L G V Y N . . . . . . 55067 TGGTCTGGGACAATTTCTCCTAATATGTCCAATATCCCCACATCCATAACATTCTTTGGA W S G T I S P N M S N I P T S I T F F G G L G Q F L L I C P I S P H P - H S L E L V W D N F S - Y V Q Y P H I H N I L W . . . . . . 55007 GTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGT V D H M P L G E V L T G L R W S P N Y S S I I C P S E K C - P V - G G P P T T V S R S Y A P R R S V D R S E V V P Q L Q . . . . . . 54947 CTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTA L - - R L N W S D - V T S R T L S S S V C S E D - I G R T E - L P E P C P L V - S V V K T E L V G L S N F P N P V L - C . . . . . . 54887 AGAACCATTCAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTC R T I Q L T S L S K P F - C R C C G E V E P F N S P P F R S L F D V D V V V K S K N H S T H L P F E A F L M S M L W - S . . . . . . 54827 GTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGC V W L H S F H F Y H K V Y H L L E G F C S G F T P S T S I T K S T T S W K D F A R L A S L L P L L S Q S L P P L G R I L . . . . . . 54767 CGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCG R C R Y L - G R N P Q F - P Q P L H K P V A A I C K A E I R N S D L N P F T N R P L P L S V R P K S A I L T S T P S Q T . . . . . . 54707 GCGAATTCGCTCTTGGGGACTGAAACATAATTGAGTGGCATATCTAGATAGTGCACGGAA A N S L L G T E T - L S G I S R - C T E R I R S W G L K H N - V A Y L D S A R N G E F A L G D - N I I E W H I - I V H G . . . . . . 54647 CTTAGCCTCATAAGCATTAACCGACATCCTACCTTTCTCTAGGCTCAGGAACTCATCCCT L S L I S I N R H P T F L - A Q E L I P L A S - A L T D I L P F S R L R N S S L T - P H K H - P T S Y L S L G S G T H P . . . . . . 54587 TTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATGAACAAGCTAGAGAATGAGGC F P I P Q S P G D I L L H E Q A R E - G F L S L K V R G I Y F S M N K L E N E A F S Y P S K S G G Y T S P - T S - R M R . . . . . . 54527 CCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTT P S H R W C L Y W L T L D M - P P P H F Q V I G G A S I G - H S I C D R H H I L P K S - V V P L L V D T R Y V T A T T F . . . . . . 54467 GGCGTTCCCTTGAAACTGATAAGTCACGAACTCAACACCAAACCGTTCTACTATACCCAT G V P L K L I S H E L N T K P F Y Y T H A F P - N - - V T N S T P N R S T I P I W R S L E T D K S R T Q H Q T V L L Y P . . . . . . 54407 CTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACC L V - - L M T V N Q K I V S I L R F R T L C S S S - Q S T R K S - A S S D S A P S C V V A H D S Q P E N R K H P Q I P H . . . . . . 54347 CTTGAAGACTGGGGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGT L E D W G F Q F Q E L T E K F M L I I C L K T G G F N F K N L L K S S C - S F V P - R L G V S I S R T Y - K V H A D H L . . . . . . 54287 CAATATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCG Q Y R P S S Q T W K R A Y F Q W N I H A N I G P V V R R G N V P I S N G T S M R S I - A Q - S D V E T C L F P M E H P C . . . . . . 54227 GGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAGAACAC G S H S S R M L Y L R S L R C W C R E H G A I V A A C C T S G A - G A G A E N T G E P - - P H V V P P E P E V L V Q R T . . . . . . 54167 TGGGGGTGTCTGGCCCTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCAT W G C L A L I R Q P T E I G E N L I D H G G V W P - S D N P L R - A R T - L I I L G V S G P D Q T T H - D R R E P D - S . . . . . . 54107 CTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTC L W G R L G W H F L I L H L F S F P I L S G V G W G G I S S F C T C S V S P S S S L G - V G V A F P H F A L V Q F P H P . . . . . . 54047 CCCTTCTCTTATTACCTCCTCAGTCAATGGAGGAGTCACTGCCCTAGTATCAGATGGGCT P F S Y Y L L S Q W R S H C P S I R W A P S L I T S S V N G G V T A L V S D G L P L L L L P P Q S M E E S L P - Y Q M G . . . . . . 53987 AGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCAACCACGGCCTCTTGC R C S S S S P R G R P P T T S T T A S C G A R P L P L E D V L P R P Q P R P L A - V L V L F P - R T S S H D L N H G L L . 53927 CGTTGTTCT R C S V V P L F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-5_AGS-7_PPS_1 (54395 53919) (frame '1'; 477 bp, 159 residues) 1 LMTVNQKIVS ILRFRTLEDW GFQFQELTEK FMLIICQYRP SSQTWKRAYF QWNIHAGSHS 61 SRMLYLRSLR CWCREHWGCL ALIRQPTEIG ENLIDHLWGR LGWHFLILHL FSFPILPFSY 121 YLLSQWRSHC PSIRWARCSS SSPRGRPPTT STTASCRCS >C08HBa0027D09.1-_PGL-5_AGS-7_PPS_2 (55196 54942) (frame '1'; 252 bp, 84 residues) 1 CSGPSLPITS AVLVTTITST TTSSRITAST MTTSTSSYWG SITWSGTISP NMSNIPTSIT 61 FFGVDHMPLG EVLTGLRWSP NYSL- >C08HBa0027D09.1-_PGL-5_AGS-7_PPS_3 (55900 55655) (frame '2'; 243 bp, 81 residues) 1 GGTEMGQVPG SRSIQKSISL SGGIPGRSAG NTSKNSRTTE TDSIEGTWVV SSLRCAKKAK 61 HPLLIIFLAR RKETMWTGLE V- >C08HBa0027D09.1-_PGL-5_AGS-7_PPS_4 (56363 56124) (frame '1'; 237 bp, 79 residues) 1 VYQYIINKYD HEEVQIWLKN PIHQAHERSR GIRKTKRHHY KFVIPIPRLK SSLGHIRCPY 61 FQLMITGSQV NLREDTSTL- >C08HBa0027D09.1-_PGL-5_AGS-7_PPS_5 (54886 54674) (frame '2'; 210 bp, 70 residues) 1 EPFNSPPFRS LFDVDVVVKS SGFTPSTSIT KSTTSWKDFA VAAICKAEIR NSDLNPFTNR 61 RIRSWGLKHN - 3-phase translation of AGS-7 (+strand): . . . . . . 53919 AGAACAACGGCAAGAGGCCGTGGTTGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGA R T T A R G R G - G R G R T S S R G R G E Q R Q E A V V E V V G G R P L G E E D N N G K R P W L R S W E D V L - G K R . . . . . . 53979 CGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCATTGACTGAGGAGGTAATA R A P S P S D T R A V T P P L T E E V I E H L A H L I L G Q - L L H - L R R - - T S T - P I - Y - G S D S S I D - G G N . . . . . . 54039 AGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCT R E G E D G E T E Q V Q N E E M P P Q P E K G R M G K L N K C K M R K C H P N L K R R G G W G N - T S A K - G N A T P T . . . . . . 54099 ACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAGGGCCAG T P E M I N Q V L A Y L S G L S D Q G Q P Q R - S I R F S P I S V G C L I R A R Y P R D D Q S G S R L S Q W V V - S G P . . . . . . 54159 ACACCCCCAGTGTTCTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACT T P P V F S A P A P Q A P E V Q H A A T H P Q C S L H Q H L R L R R Y N M R L L D T P S V L C T S T S G S G G T T C G Y . . . . . . 54219 ATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGG M A P R M D V P L E I G T F P R L T T G W L P A W M F H W K - A R F H V - L L G Y G S P H G C S I G N R H V S T S D Y W . . . . . . 54279 CCTATATTGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCCCCA P I L T N D Q H E L F S K F L K L K P P L Y - Q M I S M N F S V S S - N - N P Q A Y I D K - S A - T F Q - V L E I E T P . . . . . . 54339 GTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTA V F K G A E S E D A Y D F L V D C H E L S S R V R N L R M L T I F W L T V M S Y S L Q G C G I - G C L R F S G - L S - A . . . . . . 54399 CTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGACTTATCAGTTTCAA L H K M G I V E R F G V E F V T Y Q F Q Y T R W V - - N G L V L S S - L I S F K T T Q D G Y S R T V W C - V R D L S V S . . . . . . 54459 GGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCT G N A K M W W R S H I E C Q P I E A P P G T P K C G G G H I S S V N Q - R H H L R E R Q N V V A V T Y R V S T N R G T T . . . . . . 54519 ATGACTTGGGCCTCATTCTCTAGCTTGTTCATGGAGAAGTATATCCCCCGGACTTTGAGG M T W A S F S S L F M E K Y I P R T L R - L G P H S L A C S W R S I S P G L - G Y D L G L I L - L V H G E V Y P P D F E . . . . . . 54579 GATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGAAAGGTAGGATGTCGGTTAATGCTTAT D R K R D E F L S L E K G R M S V N A Y I G K G M S S - A - R K V G C R L M L M G - E K G - V P E P R E R - D V G - C L . . . . . . 54639 GAGGCTAAGTTCCGTGCACTATCTAGATATGCCACTCAATTATGTTTCAGTCCCCAAGAG E A K F R A L S R Y A T Q L C F S P Q E R L S S V H Y L D M P L N Y V S V P K S - G - V P C T I - I C H S I M F Q S P R . . . . . . 54699 CGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATA R I R R F V K G L R S E L R I S A L Q I E F A G L - R G - G Q N C G F R P Y R - A N S P V C E G V E V R I A D F G L T D . . . . . . 54759 GCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTG A A T A K S F Q E V V D F V I E V E G V R Q R Q N P S K R W - T L - - K W K E - S G N G K I L P R G G R L C D R S G R S . . . . . . 54819 AAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTG K P D D F T T T S T S K R L R K G G E L S Q T T S P Q H R H Q K G F E R E V S - E A R R L H H N I D I K K A S K G R - V . . . . . . 54879 AATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCT N G S Y T R G Q G S G S Y S V R P I Q S M V L T L E D R V R E V T Q S D Q F S L E W F L H - R T G F G K L L S P T N S V . . . . . . 54939 TCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCAT S L Q T V V G G P P Q T G Q H F S E G H H Y R L - L G D H L R P V N T S P R G I F T T D C S W G T T S D R S T L L R G A . . . . . . 54999 ATGATCGACTCCAAAGAATGTTATGGATGTGGGGATATTGGACATATTAGGAGAAATTGT M I D S K E C Y G C G D I G H I R R N C - S T P K N V M D V G I L D I L G E I V Y D R L Q R M L W M W G Y W T Y - E K L . . . . . . 55059 CCCAGACCAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGT P R P S Y R P P I A R G R G G H G R G R P D Q V I D P Q - L E V E V V M V E A V S Q T K L - T P N S - R - R W S W - R P . . . . . . 55119 TATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAGAACGGCAGAGGTAATGGG Y S G G R G G R G N G G H Q N G R G N G I L E D V V V E V M V V T R T A E V M G L F W R T W W S R - W W S P E R Q R - W . . . . . . 55179 CAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAATGATAGGGCC Q T G A T T S Q H G R G N G Q T N D R A K L G P L H H N M V G A T D R R M I G P A N W G H Y I T T W - G Q R T D E - - G . . . . . . 55239 CATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGT H C Y A F P G R S E A E A S D A V I T G I V T L S L G G L K R R H L M L S S Q V P L L R F P W A V - S G G I - C C H H R . . . . . . 55299 AATCTTCTTGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCT N L L V C D C M A S V L F D P G S T F S I F L F V I A W L L Y C L I L D P R F L - S S C L - L H G F C I V - S W I H V F . . . . . . 55359 TATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCT Y V S S S F A N G L N L H C E L L D M P M Y L P H L L M V - I Y I V N Y L I C L L C I F L I C - W S K F T L - I T - Y A . . . . . . 55419 ATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTAT I H V S T P V G E S V V V E K V Y R S Y F M F L L R W V S L W - L K R C I G L I Y S C F Y S G G - V C G S - K G V - V L . . . . . . 55479 TTGGTGAACTTTGTGGGGAGCAACACCTATGTAGATTTGGTTATCTTAGAAATGGACGAT L V N F V G S N T Y V D L V I L E M D D W - T L W G A T P M - I W L S - K W T I F G E L C G E Q H L C R F G Y L R N G R . . . . . . 55539 TTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAAT F D V I L G M T W L S P Q F A I L D C N L M - F W V - L G F L R N L Q S W I V M F - C D S G Y D L A F S A I C N L G L - . . . . . . 55599 GCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTAC A K T V T L A K P G T D P L V W E G D Y L K R - R - P S L G Q T R - C G R V T T C - N G D V S Q A W D R P V S V G G - L . . . . . . 55659 ACTTCCAATCCGGTCCACATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGG T S N P V H I V S F L R A K K M I S K G L P I R S T S S P F F V L R K - L V K G H F Q S G P H R L L S S C - E N D - - R . . . . . . 55719 TGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCG C L A F L A H L K D D T T Q V P S I E S V - L S W H I S R M T L P K Y L R L S R V F S F L G T S Q G - H Y P S T F D - V . . . . . . 55779 GTTTCAGTAGTTCGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCG V S V V R E F L D V F P A D L P G M P P F Q - F V S F W M C S L Q I F L V C H R G F S S S - V F G C V P C R S S W Y A T . . . . . . 55839 GATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTTGTCCCATCTCTGTACCC D R D I D F C I D L E P G T C P I S V P I G I L T S V L I L N P V L V P S L Y P G - G Y - L L Y - S - T R Y L S H L C T . . . . . . 55899 CCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGTCACAACTTCAAGAATTATTG P Y R M A P A E L R E L K S Q L Q E L L L I E W L P R S - E S - S H N F K N Y - P L - N G S R G V K R V K V T T S R I I . . . . . . 55959 AATAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTTCGGTTTTGTTTGTAAAG N K G F I R P S A S P W G A S V L F V K I K A S L D Q V H P L G V L R F C L - R E - R L H - T K C I P L G C F G F V C K . . . . . . 56019 AAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGATAACTAAACAAGGTAACCATA K K D G S F R M C I D Y R - L N K V T I R R M G V F E C V - T T D N - T R - P - E E G W E F S N V Y R L Q I T K Q G N H . . . . . . 56079 AAGAACAAGTATCCTCTTCCCCGCATTGATGATTTGTTCGATCAGTTACAAGGTGCTTGT K N K Y P L P R I D D L F D Q L Q G A C R T S I L F P A L M I C S I S Y K V L V K E Q V S S S P H - - F V R S V T R C L . . . . . . 56139 GTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGAT V F S K I D L R S G Y H Q L K I R A T D S S L R L T - D P V I I N - K Y G Q R M C L L - D - L E I R L S S I E N T G N G . . . . . . 56199 GTGCCCAAGACTGCTTTTCAAACGAGGTATGGGAATTACGAATTTGTAGTGATGTCTTTT V P K T A F Q T R Y G N Y E F V V M S F C P R L L F K R G M G I T N L - - C L L C A Q D C F S N E V W E L R I C S D V F . . . . . . 56259 GGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAATGGGATTTTTAAGCCATAT G L T N A P A A F M S L M N G I F K P Y V L R M P L L R S - A - - M G F L S H I W S Y E C P C C V H E L D E W D F - A I . . . . . . 56319 TTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAG L D L F V I V F I D D I L V Y S K S K K W T S S - S Y L L M I Y W Y T Q R A R R F G P L R D R I Y - - Y I G I L K E Q E . . . . . . 56379 GAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCC E H E E H L R M V L E M L R E K K L Y A N M K S I - E W Y W K C - G R K S F M P G T - R A F E N G I G N V E G E K A L C . . . . . . 56439 AAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGACACGTGGTTTCT K F S K C E F W L D A V S F L G H V V S S S L S V S F G - M Q C P S W D T W F L Q V L - V - V L A R C S V L L G T R G F . . . . . . 56499 AAGGATGGAATGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCT K D G M M V D P S K I E T V K N W V R P R M E - W W I L L R L R Q - R I G - D L - G W N D G G S F - D - D S E E L G K T . . . . . . 56559 ACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTC T N V S E I R S F V G L A S Y Y R R F V L M C Q K - G A L L G - L A T T A D L S Y - C V R N K E L C W V S - L L P P I C . 56619 AAGGGATTC K G F R D Q G I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-5_AGS-7_PPS_1 (53946 56060) (frame '1'; 2112 bp, 704 residues) 1 GRGRTSSRGR GRAPSPSDTR AVTPPLTEEV IREGEDGETE QVQNEEMPPQ PTPEMINQVL 61 AYLSGLSDQG QTPPVFSAPA PQAPEVQHAA TMAPRMDVPL EIGTFPRLTT GPILTNDQHE 121 LFSKFLKLKP PVFKGAESED AYDFLVDCHE LLHKMGIVER FGVEFVTYQF QGNAKMWWRS 181 HIECQPIEAP PMTWASFSSL FMEKYIPRTL RDRKRDEFLS LEKGRMSVNA YEAKFRALSR 241 YATQLCFSPQ ERIRRFVKGL RSELRISALQ IAATAKSFQE VVDFVIEVEG VKPDDFTTTS 301 TSKRLRKGGE LNGSYTRGQG SGSYSVRPIQ SSLQTVVGGP PQTGQHFSEG HMIDSKECYG 361 CGDIGHIRRN CPRPSYRPPI ARGRGGHGRG RYSGGRGGRG NGGHQNGRGN GQTGATTSQH 421 GRGNGQTNDR AHCYAFPGRS EAEASDAVIT GNLLVCDCMA SVLFDPGSTF SYVSSSFANG 481 LNLHCELLDM PIHVSTPVGE SVVVEKVYRS YLVNFVGSNT YVDLVILEMD DFDVILGMTW 541 LSPQFAILDC NAKTVTLAKP GTDPLVWEGD YTSNPVHIVS FLRAKKMISK GCLAFLAHLK 601 DDTTQVPSIE SVSVVREFLD VFPADLPGMP PDRDIDFCID LEPGTCPISV PPYRMAPAEL 661 RELKSQLQEL LNKGFIRPSA SPWGASVLFV KKKDGSFRMC IDYR- >C08HBa0027D09.1+_PGL-5_AGS-7_PPS_2 (56061 56627) (frame '1'; 567 bp, 189 residues) 1 LNKVTIKNKY PLPRIDDLFD QLQGACVFSK IDLRSGYHQL KIRATDVPKT AFQTRYGNYE 61 FVVMSFGLTN APAAFMSLMN GIFKPYLDLF VIVFIDDILV YSKSKKEHEE HLRMVLEMLR 121 EKKLYAKFSK CEFWLDAVSF LGHVVSKDGM MVDPSKIETV KNWVRPTNVS EIRSFVGLAS 181 YYRRFVKGF AGS-8 (56055 55539,54794 54613) SCR (e 0.911 d 0.000 a 0.000,e 0.879) Exon 1 56055 55539 ( 517 n); score: 0.911 Intron 1 55538 54795 ( 744 n); Pd: 0.000 Pa: 0.000 Exon 2 54794 54613 ( 182 n); score: 0.879 PGS (56055 55539,54794 54613) SGN-E353359+ 3-phase translation of AGS-8 (-strand): . . . . . . 56055 TGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGAAGCAC C S L Y T F E N S H P S S L Q T K P K H V V Y T H S K T P I L L L Y K Q N R S T - S I H I R K L P S F F F T N K T E A . . . . . . 55995 CCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAATTCTTGAAGTTGTGACT P K G M H L V - - S L Y S I I L E V V T P R G C T W S N E A F I Q - F L K L - L P Q G D A L G L M K P L F N N S - S C D . . . . . . 55935 TTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTACAGAGATGGGACAAGTAC L T L L T P R E P F Y K G V Q R W D K Y - L S - L R G S H S I R G Y R D G T S T F N S L N S A G A I L - G G T E M G Q V . . . . . . 55875 CGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTG R V Q D Q Y R S Q Y P Y P V A Y Q E D L G F K I N T E V N I P I R W H T R K I C P G S R S I Q K S I S L S G G I P G R S . . . . . . 55815 CAGGGAACACATCCAAAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGG Q G T H P K T H E L L K P T Q S K V L G R E H I Q K L T N Y - N R L N R R Y L G A G N T S K N S R T T E T D S I E G T W . . . . . . 55755 TAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAG - C H P - D V P R K L N T L Y - S F S - S V I L E M C Q E S - T P F T N H F L S V V S S L R C A K K A K H P L L I I F L . . . . . . 55695 CACGAAGAAAGGAGACGATGTGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACG H E E R R R C G P D W K C S H P P T L T T K K G D D V D R I G S V V T L P H - R A R R K E T M W T G L E V - S P S H T N . . . . . . 55635 GGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATT G L S Q A W L T S P F - H Y N P R L Q I V C P R L G - R H R F S I T I Q D C K L G S V P G L A N V T V L A L Q S K I A N . . . . : . . 55575 GCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAA : GTCTACCACCTCTTGGAAGGATT A E K A K S Y P E S H Q : S L P P L G R I R R K P S H T Q N H I K : V Y H L L E G F C G E S Q V I P R I T S K : S T T S W K D . . . . . . 54771 TTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAA L P L P L S V R P K S A I L T S T P S Q C R C R Y L - G R N P Q F - P Q P L H K F A V A A I C K A E I R N S D L N P F T . . . . . . 54711 ACCGGCGAATTCGCTCTTGGGGACTGAAACATAATTGAGTGGCATATCTAGATAGTGCAC T G E F A L G D - N I I E W H I - I V H P A N S L L G T E T - L S G I S R - C T N R R I R S W G L K H N - V A Y L D S A . . . . 54651 GGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTT G T - P H K H - P T S Y L E L S L I S I N R H P T R N L A S - A L T D I L P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-5_AGS-8_PPS_1 (55900 55655) (frame '0'; 243 bp, 81 residues) 1 GGTEMGQVPG SRSIQKSISL SGGIPGRSAG NTSKNSRTTE TDSIEGTWVV SSLRCAKKAK 61 HPLLIIFLAR RKETMWTGLE V- >C08HBa0027D09.1-_PGL-5_AGS-8_PPS_2 (55654 55539,54794 54674) (frame '0'; 234 bp, 78 residues) 1 SPSHTNGSVP GLANVTVLAL QSKIANCGES QVIPRITSKS TTSWKDFAVA AICKAEIRNS 61 DLNPFTNRRI RSWGLKHN- AGS-9 (55446 55417,55385 54851) SCR (e 0.633 d 0.661 a 0.181,e 0.961) Exon 1 55446 55417 ( 30 n); score: 0.633 Intron 1 55416 55386 ( 31 n); Pd: 0.661 Pa: 0.181 Exon 2 55385 54851 ( 535 n); score: 0.961 PGS (55446 55417,55385 54851) SGN-E577713+ 3-phase translation of AGS-9 (-strand): . . . : . . . 55446 ACTCACCCACCGGAGTAGAAACATGAATAG : ACCATTAGCAAATGAGGAAGATACATAAGA T H P P E - K H E - : T I S K - G R Y I R L T H R S R N M N R : P L A N E E D T - E S P T G V E T - I : D H - Q M R K I H K . . . . . . 55355 AAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACC K R G S R I K Q Y R S H A I T N K K I T N V D P G S N N T E A M Q S Q T R R L P K T W I Q D Q T I Q K P C N H K Q E D Y . . . . . . 55295 TGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGC C D D S I R C L R F R P P R E S V T M G V M T A S D A S A S D R P G K A - Q W A L - - Q H Q M P P L Q T A Q G K R N N G . . . . . . 55235 CCTATCATTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCC P I I R L S V A P T M L - C S G P S L P L S F V C P L P L P C C D V V A P V C P P Y H S S V R C P Y H V V M - W P Q F A . . . . . . 55175 ATTACCTCTGCCGTTCTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACG I T S A V L V T T I T S T T T S S R I T L P L P F W - P P L P R P P R P P E - R H Y L C R S G D H H Y L D H H V L Q N N . . . . . . 55115 GCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACA A S T M T T S T S S Y W G S I T W S G T P L P - P P L P L A I G G L - L G L G Q G L Y H D H L Y L - L L G V Y N L V W D . . . . . . 55055 ATTTCTCCTAATATGTCCAATATCCCCACATCCATAACATTCTTTGGAGTCGATCATATG I S P N M S N I P T S I T F F G V D H M F L L I C P I S P H P - H S L E S I I C N F S - Y V Q Y P H I H N I L W S R S Y . . . . . . 54995 CCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGA P L G E V L T G L R W S P N Y S L - - R P S E K C - P V - G G P P T T V C S E D A P R R S V D R S E V V P Q L Q S V V K . . . . . . 54935 CTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTCAA L N W S D - V T S R T L S S S V R T I Q - I G R T E - L P E P C P L V - E P F N T E L V G L S N F P N P V L - C K N H S . . . 54875 CTCACCTCCCTTTCGAAGCCTTTTT L T S L S K P F S P P F R S L F T H L P F E A F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-5_AGS-9_PPS_1 (55196 54942) (frame '1'; 252 bp, 84 residues) 1 CSGPSLPITS AVLVTTITST TTSSRITAST MTTSTSSYWG SITWSGTISP NMSNIPTSIT 61 FFGVDHMPLG EVLTGLRWSP NYSL- PGL 6 (+ strand): 57344 58107 AGS-1 (57344 57885) SCR (e 0.877) Exon 1 57344 57885 ( 542 n); score: 0.877 PGS (57344 57885) SGN-E353207- 3-phase translation of AGS-1 (+strand): . . . . . . 57344 AAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCC K E A Q I D E E G V L R I K G R V C V P R K H K S M R K V F - E S R E G Y V Y P G S T N R - G R C F E N Q G K G M C T . . . . . . 57404 CGCGTCGATGATTTGATCAACACTATTCTGACTGAGGCTCATAGTTCAAGGTATTCGATA R V D D L I N T I L T E A H S S R Y S I A S M I - S T L F - L R L I V Q G I R Y P R R - F D Q H Y S D - G S - F K V F D . . . . . . 57464 CATCCGGGTGCAACCAAGATGTATCGTGACCTAAAACAACACTTTTGGTGGAGTAGAATG H P G A T K M Y R D L K Q H F W W S R M I R V Q P R C I V T - N N T F G G V E - T S G C N Q D V S - P K T T L L V E - N . . . . . . 57524 AAGCGTGACATTGTGGATTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAA K R D I V D F I A K C P N C Q Q V K Y E S V T L W I L L P N V Q T V N K - S M N E A - H C G F Y C Q M S K L S T S K V - . . . . . . 57584 CACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGA H Q R P G G T L Q R M P I P E W K W E R T K G P E E H F R E C P F R N G S G K E T P K A R R N T S E N A H S G M E V G K . . . . . . 57644 ATTGCAATGAACTTTGTGGTTGGTCTTCCGAAGACAATGGGTAAGTATGACTCCATTTGG I A M N F V V G L P K T M G K Y D S I W L Q - T L W L V F R R Q W V S M T P F G N C N E L C G W S S E D N G - V - L H L . . . . . . 57704 GTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTCAAGGTGACTTACAAT V I V D R L T K S A H F I P V K V T Y N - L L I G - L N L L I S F R S R - L T M G D C - - V N - I C S F H S G Q G D L Q . . . . . . 57764 GCAGAAAAGTTAGCCCAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGCTCCACTA A E K L A Q L Y I S E V V R L H G A P L Q K S - P N F T S R K W C D C M G L H Y C R K V S P T L H L G S G A I A W G S T . . . . . . 57824 TCCATCATATCAGATAGAGGTACGCAGTTTACTTCTATGTTTTGGAAAACATTGCATGCA S I I S D R G T Q F T S M F W K T L H A P S Y Q I E V R S L L L C F G K H C M Q I H H I R - R Y A V Y F Y V L E N I A C . 57884 GA R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-6_AGS-1_PPS_1 (57344 57883) (frame '1'; 540 bp, 180 residues) 1 KEAQIDEEGV LRIKGRVCVP RVDDLINTIL TEAHSSRYSI HPGATKMYRD LKQHFWWSRM 61 KRDIVDFIAK CPNCQQVKYE HQRPGGTLQR MPIPEWKWER IAMNFVVGLP KTMGKYDSIW 121 VIVDRLTKSA HFIPVKVTYN AEKLAQLYIS EVVRLHGAPL SIISDRGTQF TSMFWKTLHA 3-phase translation of AGS-1 (-strand): . . . . . . 57885 TCTGCATGCAATGTTTTCCAAAACATAGAAGTAAACTGCGTACCTCTATCTGATATGATG S A C N V F Q N I E V N C V P L S D M M L H A M F S K T - K - T A Y L Y L I - W C M Q C F P K H R S K L R T S I - Y D . . . . . . 57825 GATAGTGGAGCCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTGGGCTAACTTTTCT D S G A P C N R T T S E M - S W A N F S I V E P H A I A P L P R C K V G L T F L G - W S P M Q S H H F R D V K L G - L F . . . . . . 57765 GCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATC A L - V T L T G M K - A D L V N L S T I H C K S P - P E - N E Q I - L T Y Q Q S C I V S H L D R N E M S R F S - P I N N . . . . . . 57705 ACCCAAATGGAGTCATACTTACCCATTGTCTTCGGAAGACCAACCACAAAGTTCATTGCA T Q M E S Y L P I V F G R P T T K F I A P K W S H T Y P L S S E D Q P Q S S L Q H P N G V I L T H C L R K T N H K V H C . . . . . . 57645 ATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGG I L S H F H S G M G I L - S V P P G L W F F P T S I P E W A F S E V F L R A F G N S F P L P F R N G H S L K C S S G P L . . . . . . 57585 TGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATGTCACGC C S Y F T C - Q F G H L A I K S T M S R V H T L L V D S L D I W Q - N P Q C H A V F I L Y L L T V W T F G N K I H N V T . . . . . . 57525 TTCATTCTACTCCACCAAAAGTGTTGTTTTAGGTCACGATACATCTTGGTTGCACCCGGA F I L L H Q K C C F R S R Y I L V A P G S F Y S T K S V V L G H D T S W L H P D L H S T P P K V L F - V T I H L G C T R . . . . . . 57465 TGTATCGAATACCTTGAACTATGAGCCTCAGTCAGAATAGTGTTGATCAAATCATCGACG C I E Y L E L - A S V R I V L I K S S T V S N T L N Y E P Q S E - C - S N H R R M Y R I P - T M S L S Q N S V D Q I I D . . . . . . 57405 CGGGGTACACATACCCTTCCCTTGATTCTCAAAACACCTTCCTCATCGATTTGTGCTTCC R G T H T L P L I L K T P S S S I C A S G V H I P F P - F S K H L P H R F V L P A G Y T Y P S L D S Q N T F L I D L C F . 57345 TT L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-6_AGS-1_PPS_1 (57718 57494) (frame '0'; 222 bp, 74 residues) 1 PINNHPNGVI LTHCLRKTNH KVHCNSFPLP FRNGHSLKCS SGPLVFILYL LTVWTFGNKI 61 HNVTLHSTPP KVLF- AGS-2 (57931 58107) SCR (e 0.949) Exon 1 57931 58107 ( 177 n); score: 0.949 PGS (57931 58107) SGN-E577888- 3-phase translation of AGS-2 (+strand): . . . . . . 57931 CGATGGTAAGTCTGAAAGGACGATTCAAGTGTTGGAGGATATGTTTCGTGCGTGTGTGAT R W - V - K D D S S V G G Y V S C V C D D G K S E R T I Q V L E D M F R A C V I M V S L K G R F K C W R I C F V R V - . . . . . . 57991 AGAGTTTGGTGGTCATTGGGATAGCTTCCTACCCTTAGCGGAGTTTTCATACAATAATAG R V W W S L G - L P T L S G V F I Q - - E F G G H W D S F L P L A E F S Y N N S - S L V V I G I A S Y P - R S F H T I I . . . . . . 58051 CTATCACTCAAGTATTGATATGGCTCCATTCGAAGCATTGTATGGTAGGAGATGTAG L S L K Y - Y G S I R S I V W - E M - Y H S S I D M A P F E A L Y G R R C A I T Q V L I W L H S K H C M V G D V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 58107 CTACATCTCCTACCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTA L H L L P Y N A S N G A I S I L E - - L Y I S Y H T M L R M E P Y Q Y L S D S Y T S P T I Q C F E W S H I N T - V I A . . . . . . 58047 TTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATC L L Y E N S A K G R K L S Q - P P N S I Y C M K T P L R V G S Y P N D H Q T L S I I V - K L R - G - E A I P M T T K L Y . . . . . . 57987 ACACACGCACGAAACATATCCTCCAACACTTGAATCGTCCTTTCAGACTTACCATCG T H A R N I S S N T - I V L S D L P S H T H E T Y P P T L E S S F Q T Y H H T R T K H I L Q H L N R P F R L T I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 60745 58169 AGS-1 (60061 60039,59335 58169) SCR (e 0.739 d 0.827 a 0.000,e 0.894) Exon 1 60061 60039 ( 23 n); score: 0.739 Intron 1 60038 59336 ( 703 n); Pd: 0.827 Pa: 0.000 Exon 2 59335 58169 (1167 n); score: 0.894 PGS (58930 58169) SGN-E354383- PGS (59047 58511) SGN-E252199- PGS (58892 58763) SGN-E356257+ PGS (59321 58764) SGN-E389553- PGS (59321 58764) SGN-E550212+ PGS (59321 58764) SGN-E550065+ PGS (59321 58764) SGN-E550201+ PGS (59321 58764) SGN-E550207+ PGS (59321 58764) SGN-E550335+ PGS (59321 58764) SGN-E390013+ PGS (59321 58764) SGN-E389834+ PGS (59321 58764) SGN-E550484+ PGS (59321 58764) SGN-E550211+ PGS (59321 58764) SGN-E550464+ PGS (59321 58764) SGN-E549941+ PGS (59321 58764) SGN-E550025+ PGS (59321 58764) SGN-E231589+ PGS (59321 58764) SGN-E374999+ PGS (59321 58764) SGN-E396039+ PGS (59321 58764) SGN-E396056+ PGS (59321 58764) SGN-E377133+ PGS (59321 58764) SGN-E550140- PGS (59321 58764) SGN-E550127- PGS (59314 58764) SGN-E550322+ PGS (59288 58764) SGN-E396057- PGS (59272 58764) SGN-E377132- PGS (59256 58764) SGN-E396055- PGS (59254 58764) SGN-E398551- PGS (59244 58764) SGN-E396038- PGS (59138 58764) SGN-E396069- PGS (59131 58764) SGN-E374998- PGS (59321 58767) SGN-E396054+ PGS (59321 58767) SGN-E396058+ PGS (59321 58777) SGN-E241959+ PGS (60061 60039,59335 58811) SGN-E349296- PGS (59321 58849) SGN-E236652+ PGS (59278 58885) SGN-E356257- 3-phase translation of AGS-1 (-strand): . . . : . . . 60061 TTATCTTTATTTCTCTTGTGTCG : TTCTCCCTTCTCGTTCGATTCTCTCTCTCTCTCCTGT L S L F L L C R : S P F S F D S L S L S C Y L Y F S C V : V L P S R S I L S L S P V I F I S L V S : F S L L V R F S L S L L . . . . . . 59298 TCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGA S F Y F L Y S N P L S F T L I S I - L R L S I F F I Q T L F L L P - L V Y N - E F F L F S L F K P S F F Y P N - Y I I K . . . . . . 59238 ATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCTCAA I K D G N N T P L I N L G L P L L T P Q - K M A I I P H - L T - G Y L F - P L K N K R W Q - Y P T N - L R V T S F N P S . . . . . . 59178 GAATTTTAGTTATTAATATAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCAAAA E F - L L I - T H E I Y N - G K N S P K N F S Y - Y K P T K S I I K E R I V Q K R I L V I N I N P R N L - L R K E - S K . . . . . . 59118 ACGTCCCTTAAAACTTCACCAGAAATCCGACTCTGCCTGGGATTTGCGCAACCTGTGACG T S L K T S P E I R L C L G F A Q P V T R P L K L H Q K S D S A W D L R N L - R N V P - N F T R N P T L P G I C A T C D . . . . . . 59058 GGCCGTCGTGCCTGCGACGGTCCGTCCTGCATGTCGTCGCAAAGTTCAGAGAATGGATTT G R R A C D G P S C M S S Q S S E N G F A V V P A T V R P A C R R K V Q R M D F G P S C L R R S V L H V V A K F R E W I . . . . . . 58998 TCACTGAAGTCTCCGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTCA S L K S P - R S V T P V T V R P A I P S H - S L R D G P S R L - R S V L P F R H F T E V S V T V R H A C D G P S C H S V . . . . . . 58938 CGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACG R S S E S R F S V P N F R F S K C F E T E V Q R V D F Q Y P I S D F L S V L K R T K F R E S I F S T Q F Q I F - V F - N . . . . . . 58878 AGACCCTGCGACGGTCCGTCGTGCCCATGACGTTCCATCGTGGGGTCCGTCGCTTCTGCC R P C D G P S C P - R S I V G S V A S A D P A T V R R A H D V P S W G P S L L P E T L R R S V V P M T F H R G V R R F C . . . . . . 58818 AGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGTCGTTACATTAGATA S F S R I E V C C S K R L N G S L H - I V F P E L K S V A Q N D - T G R Y I R Y Q F F Q N - S L L L K T T K R V V T L D . . . . . . 58758 CCAATTTACCCATCGTTCGTCCCCGAACGATCAAAAGAAGGAAAACAAGGGCTAAAAGGA P I Y P S F V P E R S K E G K Q G L K G Q F T H R S S P N D Q K K E N K G - K E T N L P I V R P R T I K R R K T R A K R . . . . . . 58698 GTACCTGAATCTGTAATCAGATGTGGGTATTTTTCTCGCATATTCGCCTCCTTCTCCCAA V P E S V I R C G Y F S R I F A S F S Q Y L N L - S D V G I F L A Y S P P S P K S T - I C N Q M W V F F S H I R L L L P . . . . . . 58638 GTGGCTTCTTCAACCGGTCGATTCTTCCATTGCACCTTGATGGATGCAATCTCTCTTGAC V A S S T G R F F H C T L M D A I S L D W L L Q P V D S S I A P - W M Q S L L T S G F F N R S I L P L H L D G C N L S - . . . . . . 58578 CTCAACTTGCGAACTTCTCTATCTAAAATAGCAACAGGCTTCTCCTCATAAGACAAGTTC L N L R T S L S K I A T G F S S - D K F S T C E L L Y L K - Q Q A S P H K T S S P Q L A N F S I - N S N R L L L I R Q V . . . . . . 58518 TCATCAAGCAAAACTGAATCCCAACGGATAATGTAGTTTCCATCCCCGTGGCATCTTTTC S S S K T E S Q R I M - F P S P W H L F H Q A K L N P N G - C S F H P R G I F S L I K Q N - I P T D N V V S I P V A S F . . . . . . 58458 AACATCGACACATGGAATACCGGATGTACTACGGACAGCCCTGGGGGCAAGGCTAACTCA N I D T W N T G C T T D S P G G K A N S T S T H G I P D V L R T A L G A R L T H Q H R H M E Y R M Y Y G Q P W G Q G - L . . . . . . 58398 TAAGCCACCTCCCCTACTCGCTTGAGTACTTCAAATTGTCCAATGTACCTTGGACTTAGT - A T S P T R L S T S N C P M Y L G L S K P P P L L A - V L Q I V Q C T L D L V I S H L P Y S L E Y F K L S N V P W T - . . . . . . 58338 TTACCCCTTTTTCCAAACCGCATCACCTCTTTCATGGGCGAAACTTTCAACAAGACTTGT L P L F P N R I T S F M G E T F N K T C Y P F F Q T A S P L S W A K L S T R L V F T P F S K P H H L F H G R N F Q Q D L . . . . . . 58278 TCACCTTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGTCTACTT S P S M N S K S L T F R S A Y S F C L L H L P - T L S L - P F D L H I L F V Y F F T F H E L - V S N L S I C I F F L S T . . . . . 58218 TGCGCCGCTAGAAGCTTTTCTTGAATAGACTTCACTTTTTCCATCGAATC C A A R S F S - I D F T F S I E A P L E A F L E - T S L F P S N L R R - K L F L N R L H F F H R I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-7_AGS-1_PPS_1 (58761 58528) (frame '1'; 231 bp, 77 residues) 1 IPIYPSFVPE RSKEGKQGLK GVPESVIRCG YFSRIFASFS QVASSTGRFF HCTLMDAISL 61 DLNLRTSLSK IATGFSS- >C08HBa0027D09.1-_PGL-7_AGS-1_PPS_2 (59107 58892) (frame '0'; 213 bp, 71 residues) 1 NFTRNPTLPG ICATCDGPSC LRRSVLHVVA KFREWIFTEV SVTVRHACDG PSCHSVTKFR 61 ESIFSTQFQI F- >C08HBa0027D09.1-_PGL-7_AGS-1_PPS_3 (58395 58195) (frame '1'; 198 bp, 66 residues) 1 ATSPTRLSTS NCPMYLGLSL PLFPNRITSF MGETFNKTCS PSMNSKSLTF RSAYSFCLLC 61 AARSFS- AGS-2 (60745 59966,59707 59601,59564 59083) SCR (e 0.828 d 0.000 a 0.000,e 0.799 d 0.000 a 0.000,e 0.707) Exon 1 60745 59966 ( 780 n); score: 0.828 Intron 1 59965 59708 ( 258 n); Pd: 0.000 Pa: 0.000 Exon 2 59707 59601 ( 107 n); score: 0.799 Intron 2 59600 59565 ( 36 n); Pd: 0.000 Pa: 0.000 Exon 3 59564 59083 ( 482 n); score: 0.707 PGS (60044 59966,59707 59601,59564 59083) SGN-E546548- PGS (60184 59949) SGN-E391780- PGS (60428 59950) SGN-E246710- PGS (60567 59964) SGN-E546506+ PGS (60328 60175) SGN-E209683- PGS (60740 60253) SGN-E356206- PGS (60740 60253) SGN-E351546- PGS (60740 60253) SGN-E356696- PGS (60598 60324) SGN-E222578+ PGS (60745 60334) SGN-E392027+ PGS (60735 60337) SGN-E542084+ PGS (60735 60346) SGN-E370357+ PGS (60567 60346) SGN-E373117- PGS (60567 60346) SGN-E373116+ PGS (60573 60365) SGN-E216150+ PGS (60580 60382) SGN-E298638- PGS (60583 60413) SGN-E352844- PGS (60583 60413) SGN-E368629- PGS (60574 60413) SGN-E238551- 3-phase translation of AGS-2 (-strand): . . . . . . 60745 ATAATAAATTTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACGCTCCTA I I N L S R P K S G P R L A P T L T L L - - I C H D P N P G R D W H P H L R S Y N K F V T T Q I R A A T G T H T Y A P . . . . . . 60685 TGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAAT C E R T N Q S K P - H F K V I S T - S N V S E P T N L N L N I S R - Y Q H K V M M - A N Q P I - T L T F Q G N I N I K - . . . . . . 60625 GCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATTCAACATCTATTATTC A E D L N S L I K S I T I I I Q H L L F R K T - T H - - N Q - L L L F N I Y Y S C G R L K L I N K I N N Y Y Y S T S I I . . . . . . 60565 CCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTTAAACTACTAATTCTAAGAGT P K I W K S S S Q E H L L - T T N S K S P K S G S H H H K N I Y F K L L I L R V P Q N L E V I I T R T S T L N Y - F - E . . . . . . 60505 TTCTAAGAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGGAGTTCAAGGCATCAAGA F - E A K N T - E A S P C R E F K A S R S K K L K I H K K L V H A G S S R H Q D F L R S - K Y I R S - S M P G V Q G I K . . . . . . 60445 CATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAGATCCGGTGTG H E G E D P V Q A R S V S S P - R S G V M K E K I Q S K L E A L A H P E D P V - T - R R R S S P S - K R - L T L K I R C . . . . . . 60385 ACGAAGACTGGCTAGAATTACCGTTGAGTTGAGGACGACGGCACGTTTGTTGCACTCCAC T K T G - N Y R - V E D D G T F V A L H R R L A R I T V E L R T T A R L L H S T D E D W L E L P L S - G R R H V C C T P . . . . . . 60325 AAATAACAAGAAGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGA K - Q E E K H K S R G Q Y K T R V L S R N N K K K N I K V G V S T K H G Y - V D Q I T R R K T - K - G S V Q N T G T E - . . . . . . 60265 TATCATCGGCCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCATAAACTCAACT Y H R P T Q N R K Q Y I P S N I I N S T I I G Q L K I E N S I Y Q V I S - T Q L I S S A N S K - K T V Y T K - Y H K L N . . . . . . 60205 ATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCA M I L N M - Q Q Q A L Y H - Q L P S S S - Y S T C S N N K H Y I I N N Y R Q V H Y D T Q H V A T T S T I S L T I T V K F . . . . . . 60145 CTCATGAGGACTCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAG L M R T Q A P I P Y S F G N H V H - I E S - G L K P Q Y H T H L G I M F I R L S T H E D S S P N T I L I W E S C S L D - . . . . . . 60085 TATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTC Y I N I F Q D S L S L F L L C R Y V T L I L T S F K I H Y L Y F S C V G T - H S V Y - H L S R F I I F I S L V S V R D T . . . . . . : 60025 CGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTTCGTGACACCTCGATCCCCTAATTC : R S L I F I I P L V S V R D T S I P - F : A P S Y S L F L L C R F V T P R S P N S : P L P H I H Y S S C V G S - H L D P L I : . . . . . . 59707 ATCAAGCCTTCTCTATACCAAGGCATCCTCAATCCCATTACTTTAATTCATCAAGCCTTC I K P S L Y Q G I L N P I T L I H Q A F S S L L Y T K A S S I P L L - F I K P S H Q A F S I P R H P Q S H Y F N S S S L . . . . . : . 59647 TTCTATACCAAGGCATCATCAATCCCATTACTTTAATTCATCAAGCC : ATTAAAGTTTCTT F Y T K A S S I P L L - F I K P : L K F L S I P R H H Q S H Y F N S S S : H - S F F L L Y Q G I I N P I T L I H Q A : I K V S . . . . . . 59551 TTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAGTCATA F K I W D S I F S S C L S Y H N H I V I S R F G I Q Y F H H A Y L I T I T - S Y F Q D L G F N I F I M L I L S Q S H S H . . . . . . 59491 TTCATGCAAGCATACAATTAAGCATATAGCAGGGTTTACAATATTATCAATACATATCAT F M Q A Y N - A Y S R V Y N I I N T Y H S C K H T I K H I A G F T I L S I H I I I H A S I Q L S I - Q G L Q Y Y Q Y I S . . . . . . 59431 TCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAG S L L R V Y Y E Y R K R N H N L P P P K L Y - E F T T N I V R E T I T Y L H R R F S I K S L L R I S - E K P - P T S T E . . . . . . 59371 AATTGAATCAAGCAAGAATTTTCCCAAAAGCTTTGTTTCTCCCTTCTCGTTCGATTCTCT N - I K Q E F S Q K L C F S L L V R F S I E S S K N F P K S F V S P F S F D S L E L N Q A R I F P K A L F L P S R S I L . . . . . . 59311 CTCTCTCTCCTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAG L S L L F F L F S L F K P S F F Y P N - S L S C S F Y F L Y S N P L S F T L I S S L S P V L S I F F I Q T L F L L P - L . . . . . . 59251 TATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCT Y I I K N K R W Q - Y P T N - L R V T S I - L R I K D G N N T P L I N L G L P L V Y N - E - K M A I I P H - L T - G Y L . . . . . . 59191 TTTAACCCCTCAAGAATTTTAGTTATTAATATAAACCCACGAAATCTATAATTAAGGAAA F N P S R I L V I N I N P R N L - L R K L T P Q E F - L L I - T H E I Y N - G K F - P L K N F S Y - Y K P T K S I I K E . . . . . 59131 GAATAGTCCAAAAACGTCCCTTAAAACTTCACCAGAAATCCGACTCTGC E - S K N V P - N F T R N P T L N S P K T S L K T S P E I R L C R I V Q K R P L K L H Q K S D S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-7_AGS-2_PPS_1 (59984 59966,59707 59601,59564 59463) (frame '0'; 225 bp, 75 residues) 1 HLDPLIHQAF SIPRHPQSHY FNSSSLLLYQ GIINPITLIH QAIKVSFQDL GFNIFIMLIL 61 SQSHSHIHAS IQLSI- >C08HBa0027D09.1-_PGL-7_AGS-2_PPS_2 (60591 60385) (frame '2'; 204 bp, 68 residues) 1 LLLFNIYYSP KSGSHHHKNI YFKLLILRVS KKLKIHKKLV HAGSSRHQDM KEKIQSKLEA 61 LAHPEDPV- AGS-3 (60275 59686,59635 59280) SCR (e 0.895 d 0.054 a 0.000,e 0.868) Exon 1 60275 59686 ( 590 n); score: 0.895 Intron 1 59685 59636 ( 50 n); Pd: 0.054 Pa: 0.000 Exon 2 59635 59280 ( 356 n); score: 0.868 PGS (59942 59686,59635 59280) SGN-E347579- PGS (59635 59301) SGN-E578076- PGS (60275 59939) SGN-E357033+ 3-phase translation of AGS-3 (-strand): . . . . . . 60275 ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCAT T E - I S S A N S K - K T V Y T K - Y H L S R Y H R P T Q N R K Q Y I P S N I I - V D I I G Q L K I E N S I Y Q V I S . . . . . . 60215 AAACTCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACC K L N Y D T Q H V A T T S T I S L T I T N S T M I L N M - Q Q Q A L Y H - Q L P - T Q L - Y S T C S N N K H Y I I N N Y . . . . . . 60155 GTCAAGTTCACTCATGAGGACTCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCA V K F T H E D S S P N T I L I W E S C S S S S L M R T Q A P I P Y S F G N H V H R Q V H S - G L K P Q Y H T H L G I M F . . . . . . 60095 TTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTA L D - V Y - H L S R F I I F I S L V S V - I E Y I N I F Q D S L S L F L L C R Y I R L S I L T S F K I H Y L Y F S C V G . . . . . . 60035 CGTGACACTCCGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTTCGTGACACCTCGAT R D T P L P H I H Y S S C V G S - H L D V T L R S L I F I I P L V S V R D T S I T - H S A P S Y S L F L L C R F V T P R . . . . . . 59975 CCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGATTCGT P L I L R V G S - H P I P - F Y V S I R P - F Y V S V R D T R S P N S T C R F V S P N S T C R F V T P D P L I L R V D S . . . . . . 59915 GACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGT D T R S P N S T C R F V T P D P L N L R T P D P L I L R V G S - H P I P - I Y V - H P I P - F Y V S V R D T R S P K S T . . . . . . 59855 GTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCT V G S - H P I S - F Y V S V R D T R S P S V R D T R S P N S T C R F V T P D L L C R F V T P D L L I L R V G S - H P I S . . . . . . 59795 AATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACAC N S T C R F V T P D P L I L R V G S - H I L R V G S - H P I P - F Y V S V R D T - F Y V S V R D T R S P N S T C R F V T . . . . . : . 59735 CCGATCCACTAATATCATTCTGTAAATCATCAAGCCTTCTCTATACCAAG : GCATCATCAA P I H - Y H S V N H Q A F S I P R : H H Q R S T N I I L - I I K P S L Y Q : G I I N P D P L I S F C K S S S L L Y T K : A S S . . . . . . 59625 TCCCATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTA S H Y F N S S S L L L Y Q G I I I N N V P I T L I H Q A F F Y T K A S S L I M Y I P L L - F I K P S S I P R H H H - - C . . . . . . 59565 TATTAAAGTTTCTTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACA Y - S F F S R F G I Q Y F H H A Y L I T I K V S F Q D L G F N I F I M L I L S Q I L K F L F K I W D S I F S S C L S Y H . . . . . . 59505 ATCACATAGTCATATTCATGCAAGCATACAATTAAGCATATAGCAGGGTTTACAATATTA I T - S Y S C K H T I K H I A G F T I L S H S H I H A S I Q L S I - Q G L Q Y Y N H I V I F M Q A Y N - A Y S R V Y N I . . . . . . 59445 TCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACC S I H I I L Y - E F T T N I V R E T I T Q Y I S F S I K S L L R I S - E K P - P I N T Y H S L L R V Y Y E Y R K R N H N . . . . . . 59385 TACCTCCACCGAAGAATTGAATCAAGCAAGAATTTTCCCAAAAGCTTTGTTTCTCCCTTC Y L H R R I E S S K N F P K S F V S P F T S T E E L N Q A R I F P K A L F L P S L P P P K N - I K Q E F S Q K L C F S L . . . . . 59325 TCGTTCGATTCTCTCTCTCTCTCCTGTTCTTTCTATTTTCTTTATT S F D S L S L S C S F Y F L Y R S I L S L S P V L S I F F I L V R F S L S L L F F L F S L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-7_AGS-3_PPS_1 (59710 59686,59635 59463) (frame '2'; 195 bp, 65 residues) 1 IIKPSLYQGI INPITLIHQA FFYTKASSLI MYIKVSFQDL GFNIFIMLIL SQSHSHIHAS 61 IQLSI- AGS-4 (60102 59371) SCR (e 0.879) Exon 1 60102 59371 ( 732 n); score: 0.879 PGS (60102 59371) SGN-E349726- 3-phase translation of AGS-4 (-strand): . . . . . . 60102 ATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGT M F I R L S I L T S F K I H Y L Y F S C C S L D - V Y - H L S R F I I F I S L V V H - I E Y I N I F Q D S L S L F L L . . . . . . 60042 GTCGGTACGTGACACTCCGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTTCGTGACA V G T - H S A P S Y S L F L L C R F V T S V R D T P L P H I H Y S S C V G S - H C R Y V T L R S L I F I I P L V S V R D . . . . . . 59982 CCTCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTC P R S P N S T C R F V T P D P L I L R V L D P L I L R V G S - H P I P - F Y V S T S I P - F Y V S V R D T R S P N S T C . . . . . . 59922 GATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAA D S - H P I P - F Y V S V R D T R S P K I R D T R S P N S T C R F V T P D P L N R F V T P D P L I L R V G S - H P I P - . . . . . . 59862 TCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCG S T C R F V T P D L L I L R V G S - H P L R V G S - H P I S - F Y V S V R D T R I Y V S V R D T R S P N S T C R F V T P . . . . . . 59802 ATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTC I S - F Y V S V R D T R S P N S T C R F S P N S T C R F V T P D P L I L R V G S D L L I L R V G S - H P I P - F Y V S V . . . . . . 59742 GTGACACCCGATCCACTAATATCATTCTGTAAATCATCAAGCCTTCTCTATACCAAGGCA V T P D P L I S F C K S S S L L Y T K A - H P I H - Y H S V N H Q A F S I P R H R D T R S T N I I L - I I K P S L Y Q G . . . . . . 59682 TCCTCAATCCCATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCAATCC S S I P L L - F I K P S S I P R H H Q S P Q S H Y F N S S S L L L Y Q G I I N P I L N P I T L I H Q A F F Y T K A S S I . . . . . . 59622 CATTACTTTAATTCATCAAGCCTTCTTCTATACCAAGGCATCATCATTAATAATGTATAT H Y F N S S S L L L Y Q G I I I N N V Y I T L I H Q A F F Y T K A S S L I M Y I P L L - F I K P S S I P R H H H - - C I . . . . . . 59562 TAAAGTTTCTTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATC - S F F S R F G I Q Y F H H A Y L I T I K V S F Q D L G F N I F I M L I L S Q S L K F L F K I W D S I F S S C L S Y H N . . . . . . 59502 ACATAGTCATATTCATGCAAGCATACAATTAAGCATATAGCAGGGTTTACAATATTATCA T - S Y S C K H T I K H I A G F T I L S H S H I H A S I Q L S I - Q G L Q Y Y Q H I V I F M Q A Y N - A Y S R V Y N I I . . . . . . 59442 ATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTAC I H I I L Y - E F T T N I V R E T I T Y Y I S F S I K S L L R I S - E K P - P T N T Y H S L L R V Y Y E Y R K R N H N L . . 59382 CTCCACCGAAGA L H R R S T E P P P K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-7_AGS-4_PPS_1 (59723 59463) (frame '2'; 258 bp, 86 residues) 1 YHSVNHQAFS IPRHPQSHYF NSSSLLLYQG IINPITLIHQ AFFYTKASSL IMYIKVSFQD 61 LGFNIFIMLI LSQSHSHIHA SIQLSI- 3-phase translation of AGS-4 (+strand): . . . . . . 59371 TCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAG S S V E V G Y G F S Y D I R S K L L I E L R W R - V M V S L T I F V V N S - - R F G G G R L W F L L R Y S - - T L N R . . . . . . 59431 AATGATATGTATTGATAATATTGTAAACCCTGCTATATGCTTAATTGTATGCTTGCATGA N D M Y - - Y C K P C Y M L N C M L A - M I C I D N I V N P A I C L I V C L H E E - Y V L I I L - T L L Y A - L Y A C M . . . . . . 59491 ATATGACTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGA I - L C D C D K I S M M K I L N P K S - Y D Y V I V I R - A - - K Y - I P N L E N M T M - L - - D K H D E N I E S Q I L . . . . . . 59551 AAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGA K E T L I Y I I N D D A L V - K K A - - K K L - Y T L L M M M P W Y R R R L D E K R N F N I H Y - - - C L G I E E G L M . . . . . . 59611 ATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAA I K V M G L M M P W Y R R R L D E L K - L K - W D - - C L G I E E G L M N - S N N - S N G I D D A L V - K K A - - I K V . . . . . . 59671 TGGGATTGAGGATGCCTTGGTATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGG W D - G C L G I E K A - - F T E - Y - W G I E D A L V - R R L D D L Q N D I S G M G L R M P W Y R E G L M I Y R M I L V . . . . . . 59731 ATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTA I G C H E P T R R I R G S G V T N R H V S G V T N R H V E L G D R V S R T D T - D R V S R T D T - N - G I G C H E P T R . . . . . . 59791 GAATTAGGAGATCGGGTGTCACGAACCGACACGTAGAATTAGGAGATCGGGTGTCACGAA E L G D R V S R T D T - N - E I G C H E N - E I G C H E P T R R I R R S G V T N R I R R S G V T N R H V E L G D R V S R . . . . . . 59851 CCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGG P T R R F R G S G V T N R H V E L G D R R H V D L G D R V S R T D T - N - G I G T D T - I - G I G C H E P T R R I R G S . . . . . . 59911 GTGTCACGAATCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATT V S R I D T - N - G I G C H E P T R R I C H E S T R R I R G S G V T N R H V E L G V T N R H V E L G D R V S R T D T - N . . . . . . 59971 AGGGGATCGAGGTGTCACGAACCGACACAAGAGGAATAATGAATATGAGGGAGCGGAGTG R G S R C H E P T Q E E - - I - G S G V G D R G V T N R H K R N N E Y E G A E C - G I E V S R T D T R G I M N M R E R S . . . . . . 60031 TCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAA S R T D T R E I K I M N L E R C - Y T Q H V P T Q E K - R - - I L K D V N I L N V T Y R H K R N K D N E S - K M L I Y S . . 60091 TCTAATGAACAT S N E H L M N I - - T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (59822 59715,59666 59371) SCR (e 0.917 d 0.814 a 0.000,e 0.899) Exon 1 59822 59715 ( 108 n); score: 0.917 Intron 1 59714 59667 ( 48 n); Pd: 0.814 Pa: 0.000 Exon 2 59666 59371 ( 296 n); score: 0.899 PGS (59822 59715,59666 59371) SGN-E357559- 3-phase translation of AGS-5 (-strand): . . . . . . 59822 GTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCC V S V R D T R S P N S T C R F V T P D P C R F V T P D L L I L R V G S - H P I P V G S - H P I S - F Y V S V R D T R S . . . . . : . 59762 CTAATTCTACGTGTCGGTTCGTGACACCCGATCCACTAATATCATTCT : TTTAATTCATCA L I L R V G S - H P I H - Y H S : F N S S - F Y V S V R D T R S T N I I L : L I H Q P N S T C R F V T P D P L I S F : F - F I . . . . . . 59654 AGCCTTCTTCTATACCAAGGCATCATCAATCCCATTACTTTAATTCATCAAGCCTTCTTC S L L L Y Q G I I N P I T L I H Q A F F A F F Y T K A S S I P L L - F I K P S S K P S S I P R H H Q S H Y F N S S S L L . . . . . . 59594 TATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCTTTTCAAGATTTGGGATTC Y T K A S S L I M Y I K V S F Q D L G F I P R H H H - - C I L K F L F K I W D S L Y Q G I I I N N V Y - S F F S R F G I . . . . . . 59534 AATATTTTCATCATGCTTATCTTATCACAATCACATAGTCATATTCATGCAAGCATACAA N I F I M L I L S Q S H S H I H A S I Q I F S S C L S Y H N H I V I F M Q A Y N Q Y F H H A Y L I T I T - S Y S C K H T . . . . . . 59474 TTAAGCATATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTA L S I - Q G L Q Y Y Q Y I S F S I K S L - A Y S R V Y N I I N T Y H S L L R V Y I K H I A G F T I L S I H I I L Y - E F . . . . . 59414 CTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAGA L R I S - E K P - P T S T E Y E Y R K R N H N L P P P K T T N I V R E T I T Y L H R R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-7_AGS-5_PPS_1 (59723 59715,59666 59463) (frame '1'; 210 bp, 70 residues) 1 YHSFNSSSLL LYQGIINPIT LIHQAFFYTK ASSLIMYIKV SFQDLGFNIF IMLILSQSHS 61 HIHASIQLSI - AGS-6 (60271 59893,59862 59604,59568 59448) SCR (e 0.743 d 0.000 a 0.000,e 0.616 d 0.000 a 0.000,e 0.744) Exon 1 60271 59893 ( 379 n); score: 0.743 Intron 1 59892 59863 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 59862 59604 ( 259 n); score: 0.616 Intron 2 59603 59569 ( 35 n); Pd: 0.000 Pa: 0.000 Exon 3 59568 59448 ( 121 n); score: 0.744 PGS (60271 59893,59862 59604,59568 59448) SGN-E349977- 3-phase translation of AGS-6 (-strand): . . . . . . 60271 AGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATACCAAGTAATATCATAAAC S R Y H R P T Q N R K Q Y I P S N I I N V D I I G Q L K I E N S I Y Q V I S - T - I S S A N S K - K T V Y T K - Y H K . . . . . . 60211 TCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCA S T M I L N M - Q Q Q A L Y H - Q L P S Q L - Y S T C S N N K H Y I I N N Y R Q L N Y D T Q H V A T T S T I S L T I T V . . . . . . 60151 AGTTCACTCATGAGGACTCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCATTAG S S L M R T Q A P I P Y S F G N H V H - V H S - G L K P Q Y H T H L G I M F I R K F T H E D S S P N T I L I W E S C S L . . . . . . 60091 ATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTG I E Y I N I F Q D S L S L F L L C R Y V L S I L T S F K I H Y L Y F S C V G T - D - V Y - H L S R F I I F I S L V S V R . . . . . . 60031 ACACTCCGCTCCCTCATATTCATTATTCCTCTTGTGTCGGTTCGTGACACCTCGATCCCC T L R S L I F I I P L V S V R D T S I P H S A P S Y S L F L L C R F V T P R S P D T P L P H I H Y S S C V G S - H L D P . . . . . . 59971 TAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGATTCGTGACA - F Y V S V R D T R S P N S T C R F V T N S T C R F V T P D P L I L R V D S - H L I L R V G S - H P I P - F Y V S I R D . . : . . . . 59911 CCCGATCCCCTAATTCTAC : TCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACG P D P L I L : L Y V S V R D T R S P N S T P I P - F Y : S T C R F V T P D L L I L R T R S P N S T : L R V G S - H P I S - F Y . . . . . . 59821 TGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCC C R F V T P D L L I L R V G S - H P I P V G S - H P I S - F Y V S V R D T R S P V S V R D T R S P N S T C R F V T P D P . . . . . . 59761 TAATTCTACGTGTCGGTTCGTGACACCCGATCCACTAATATCATTCTGTAAATCATCAAG - F Y V S V R D T R S T N I I L - I I K N S T C R F V T P D P L I S F C K S S S L I L R V G S - H P I H - Y H S V N H Q . . . . . . 59701 CCTTCTCTATACCAAGGCATCCTCAATCCCATTACTTTAATTCATCAAGCCTTCTTCTAT P S L Y Q G I L N P I T L I H Q A F F Y L L Y T K A S S I P L L - F I K P S S I A F S I P R H P Q S H Y F N S S S L L L . . . . : . . 59641 ACCAAGGCATCATCAATCCCATTACTTTAATTCATCAA : GTATATTAAAGTTTCTTTTCAA T K A S S I P L L - F I K : Y I K V S F Q P R H H Q S H Y F N S S : S I L K F L F K Y Q G I I N P I T L I H Q : V Y - S F F S . . . . . . 59546 GATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAGTCATATTCAT D L G F N I F I M L I L S Q S H S H I H I W D S I F S S C L S Y H N H I V I F M R F G I Q Y F H H A Y L I T I T - S Y S . . . . 59486 GCAAGCATACAATTAAGCATATAGCAGGGTTTACAATAT A S I Q L S I - Q G L Q Y Q A Y N - A Y S R V Y N C K H T I K H I A G F T I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-7 (60470 60027,59910 59715,59616 59570) SCR (e 0.802 d 0.000 a 0.000,e 0.908 d 0.814 a 0.000,e 0.915) Exon 1 60470 60027 ( 444 n); score: 0.802 Intron 1 60026 59911 ( 116 n); Pd: 0.000 Pa: 0.000 Exon 2 59910 59715 ( 196 n); score: 0.908 Intron 2 59714 59617 ( 98 n); Pd: 0.814 Pa: 0.000 Exon 3 59616 59570 ( 47 n); score: 0.915 PGS (60470 60027,59910 59715,59616 59570) SGN-E241789+ 3-phase translation of AGS-7 (-strand): . . . . . . 60470 ATGCCGGGAGTTCAAGGCATCAAGACATGAAGGAGAAGATCCAGTCCAAGCTAGAAGCGT M P G V Q G I K T - R R R S S P S - K R C R E F K A S R H E G E D P V Q A R S V A G S S R H Q D M K E K I Q S K L E A . . . . . . 60410 TAGCTCACCCTGAAGATCCGGTGTGACGAAGACTGGCTAGAATTACCGTTGAGTTGAGGA - L T L K I R C D E D W L E L P L S - G S S P - R S G V T K T G - N Y R - V E D L A H P E D P V - R R L A R I T V E L R . . . . . . 60350 CGACGGCACGTTTGTTGCACTCCACAAATAACAAGAAGAAAAACATAAAAGTAGGGGTCA R R H V C C T P Q I T R R K T - K - G S D G T F V A L H K - Q E E K H K S R G Q T T A R L L H S T N N K K K N I K V G V . . . . . . 60290 GTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATAT V Q N T G T E - I S S A N S K - K T V Y Y K T R V L S R Y H R P T Q N R K Q Y I S T K H G Y - V D I I G Q L K I E N S I . . . . . . 60230 ACCAAGTAATATCATAAACTCAACTATGATACTCAACATGTAGCAACAACAAGCACTATA T K - Y H K L N Y D T Q H V A T T S T I P S N I I N S T M I L N M - Q Q Q A L Y Y Q V I S - T Q L - Y S T C S N N K H Y . . . . . . 60170 TCATTAACAATTACCGTCAAGTTCACTCATGAGGACTCAAGCCCCAATACCATACTCATT S L T I T V K F T H E D S S P N T I L I H - Q L P S S S L M R T Q A P I P Y S F I I N N Y R Q V H S - G L K P Q Y H T H . . . . . . 60110 TGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATT W E S C S L D - V Y - H L S R F I I F I G N H V H - I E Y I N I F Q D S L S L F L G I M F I R L S I L T S F K I H Y L Y . . . : . . . 60050 TCTCTTGTGTCGGTACGTGACACT : CCGATCCCCTAATTCTACGTGTCGGTTCGTGACACC S L V S V R D T : P I P - F Y V S V R D T L L C R Y V T L : R S P N S T C R F V T P F S C V G T - H : S D P L I L R V G S - H . . . . . . 59874 CGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGT R S P K S T C R F V T P D L L I L R V G D P L N L R V G S - H P I S - F Y V S V P I P - I Y V S V R D T R S P N S T C R . . . . . . 59814 TCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCT S - H P I S - F Y V S V R D T R S P N S R D T R S P N S T C R F V T P D P L I L F V T P D L L I L R V G S - H P I P - F . . . . : . . 59754 ACGTGTCGGTTCGTGACACCCGATCCACTAATATCATTCT : TTTAATTCATCAAGCCTTCT T C R F V T P D P L I S F : F - F I K P S R V G S - H P I H - Y H S : F N S S S L L Y V S V R D T R S T N I I L : L I H Q A F . . . 59596 TCTATACCAAGGCATCATCATTAATAA S I P R H H H - - L Y Q G I I I N F Y T K A S S L I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 66275 61547 AGS-1 (66275 66067,64707 64336,63797 63492,62167 61547) SCR (e 1.000 d 1.000 a 0.999,e 1.000 d 0.928 a 0.716,e 0.980 d 0.998 a 0.980,e 0.998) Exon 1 66275 66067 ( 209 n); score: 1.000 Intron 1 66066 64708 (1359 n); Pd: 1.000 Pa: 0.999 Exon 2 64707 64336 ( 372 n); score: 1.000 Intron 2 64335 63798 ( 538 n); Pd: 0.928 Pa: 0.716 Exon 3 63797 63492 ( 306 n); score: 0.980 Intron 3 63491 62168 (1324 n); Pd: 0.998 Pa: 0.980 Exon 4 62167 61547 ( 621 n); score: 0.998 PGS (62009 61547) SGN-E319181- PGS (63690 63492,62167 61678) SGN-E371390- PGS (66274 66067,64707 64336,63797 63684) SGN-E371391+ PGS (66274 66067,64707 64336,63797 63740) SGN-E276843+ PGS (66275 66067,64707 64336,63797 63743) SGN-E248696+ PGS (66274 66067,64707 64357) SGN-E276836+ PGS (66274 66067,64707 64407) SGN-E271475+ PGS (66247 66067,64707 64472) SGN-E276641+ PGS (66274 66067,64707 64505) SGN-E276634+ 3-phase translation of AGS-1 (-strand): . . . . . . 66275 ATTTGAGAAAGTAGAGAATGGCGTCTTCTTCCACAACTCTGGGCATTTCCATTAGACTTG I - E S R E W R L L P Q L W A F P L D L F E K V E N G V F F H N S G H F H - T W L R K - R M A S S S T T L G I S I R L . . . . . . 66215 GATGTTCCAGCAATGAACATCTCATGTTGGTTCATCCCAGAAGCAGAACTAACATCGCCT D V P A M N I S C W F I P E A E L T S P M F Q Q - T S H V G S S Q K Q N - H R L G C S S N E H L M L V H P R S R T N I A . . . . . . 66155 TGCTATTTCATTCTTATTCCTCTCGTCTTGTTACTTTCTCTCGCCGTCGAAACAATTCTG C Y F I L I P L V L L L S L A V E T I L A I S F L F L S S C Y F L S P S K Q F C L L F H S Y S S R L V T F S R R R N N S . . . : . . . 66095 CTATCACTTCTTCCAACAAAAAGAAAAAG : AGTCCACCTAGGAAAGATACGGAGGAAGTTG L S L L P T K R K R : V H L G K I R R K L Y H F F Q Q K E K : E S T - E R Y G G S W A I T S S N K K K K : S P P R K D T E E V . . . . . . 64676 GTGATATAGATGAAGATGCTTTTGAGGCACTCTTTCAGCTGCTGGAAGAAGATCTGAAAA V I - M K M L L R H S F S C W K K I - K - Y R - R C F - G T L S A A G R R S E K G D I D E D A F E A L F Q L L E E D L K . . . . . . 64616 ATGATGAGCTATCCTTGGACGATGATGATATAACTGAGGAGGACCTTGCGAAGCTTGAAC M M S Y P W T M M I - L R R T L R S L N - - A I L G R - - Y N - G G P C E A - T N D E L S L D D D D I T E E D L A K L E . . . . . . 64556 GTGAATTGGAGGAAGCACTGAAGGATGATGAACTACTAGGAGAAATTGACTCAATTGCCA V N W R K H - R M M N Y - E K L T Q L P - I G G S T E G - - T T R R N - L N C Q R E L E E A L K D D E L L G E I D S I A . . . . . . 64496 ATGAGAACACTGAAAGTAGTATGGCTAAAGATGAAGAAGCAGTAGCAGAAGATGCCAATG M R T L K V V W L K M K K Q - Q K M P M - E H - K - Y G - R - R S S S R R C Q W N E N T E S S M A K D E E A V A E D A N . . . . . . 64436 GAGATGATGATGATGAAGATGTAGATATGCTAGTGAAATTGAAAAATTGGCAACTTAAGA E M M M M K M - I C - - N - K I G N L R R - - - - R C R Y A S E I E K L A T - E G D D D D E D V D M L V K L K N W Q L K . . . . . : . 64376 AACTGGCATATGCCTTGAAAAAGGGACGGCGTAAGTTAAAT : ATAAAGAATCTTGCTGCTG N W H M P - K R D G V S - I : - R I L L L T G I C L E K G T A - V K : Y K E S C C - K L A Y A L K K G R R K L N : I K N L A A . . . . . . 63778 ACCTATGCCTTGATAGAGCTGTTGTTCTTGAAATGCTTCGCAATCCTCCACCAAATCTTG T Y A L I E L L F L K C F A I L H Q I L P M P - - S C C S - N A S Q S S T K S C D L C L D R A V V L E M L R N P P P N L . . . . . . 63718 TGTTACTGAGTGCTGCCTTACCTGATGAACCTGTTCCCAGAATGTTAGAGGCTGCAAGCA C Y - V L P Y L M N L F P E C - R L Q A V T E C C L T - - T C S Q N V R G C K Q V L L S A A L P D E P V P R M L E A A S . . . . . . 63658 AACCCCTGGAGACTGTTCCCATCGAGATGAGTGATGCTGTGAAGCCAGATGCTAAGGTGG N P W R L F P S R - V M L - S Q M L R W T P G D C S H R D E - C C E A R C - G G K P L E T V P I E M S D A V K P D A K V . . . . . . 63598 AAACGCCAGTTCATGTGATGCAAAGTAACTGGTCTGCTCAAAAGAGACTAAAGAAAGTTC K R Q F M - C K V T G L L K R D - R K F N A S S C D A K - L V C S K E T K E S S E T P V H V M Q S N W S A Q K R L K K V . . . . . : . 63538 AATTGGAAACCCTTGAACAAGTTTATAGACGATCGAAGCGGCCCACT : AATGCCATGATTA N W K P L N K F I D D R S G P L : M P - L I G N P - T S L - T I E A A H : - C H D - Q L E T L E Q V Y R R S K R P T : N A M I . . . . . . 62154 GCAGCATTGTGCATGTAACAAATCTGCCTCGGAGAAGAGTTCTAAAATGGTTTGAAGAAA A A L C M - Q I C L G E E F - N G L K K Q H C A C N K S A S E K S S K M V - R K S S I V H V T N L P R R R V L K W F E E . . . . . . 62094 GACGGTCTGAAGAAGGGGTTCCTGCTCATCGACTTCCATACCAACCATCCTCTATATCTG D G L K K G F L L I D F H T N H P L Y L T V - R R G S C S S T S I P T I L Y I - R R S E E G V P A H R L P Y Q P S S I S . . . . . . 62034 AATAGTACTTTCCTTGTAAATACCAGCTAAAAGAAGTAGTTTCTACATGTGGAACTGGGA N S T F L V N T S - K K - F L H V E L G I V L S L - I P A K R S S F Y M W N W D E - Y F P C K Y Q L K E V V S T C G T G . . . . . . 61974 TACCAGAATTATTTGATACGGTCACAGCTTCCTTTGGCTATTCGTCTTACTGAAGCTATA Y Q N Y L I R S Q L P L A I R L T E A I T R I I - Y G H S F L W L F V L L K L - I P E L F D T V T A S F G Y S S Y - S Y . . . . . . 61914 ACAATAGCAATATCCTCTGTAAGGAAAAGACGGTGATCAACAAAAAGAAATGAACATCTT T I A I S S V R K R R - S T K R N E H L Q - Q Y P L - G K D G D Q Q K E M N I F N N S N I L C K E K T V I N K K K - T S . . . . . . 61854 TACAGCTTTTGTCTGTTCCTATCTTCTTTAGCTCCATTGAGTCTAACTATGTATACATTT Y S F C L F L S S L A P L S L T M Y T F T A F V C S Y L L - L H - V - L C I H F L Q L L S V P I F F S S I E S N Y V Y I . . . . . . 61794 TTTCTTACATTCCAGCATACTTCGTTAATAAAAGGGATATTGTAATAATATAATTAAACA F L T F Q H T S L I K G I L - - Y N - T F L H S S I L R - - K G Y C N N I I K H F S Y I P A Y F V N K R D I V I I - L N . . . . . . 61734 TGGTGACCTAAGTATTTTGAATTTCAATGTAATAGGCAGTAAAAATAAAGCTAAAAATAT W - P K Y F E F Q C N R Q - K - S - K Y G D L S I L N F N V I G S K N K A K N I M V T - V F - I S M - - A V K I K L K I . . . . . . 61674 AAAATAAAATTGTAATAGCCAGTAATATAGATAGACGATAGTAATGTATTTCATGTATTA K I K L - - P V I - I D D S N V F H V L K - N C N S Q - Y R - T I V M Y F M Y - - N K I V I A S N I D R R - - C I S C I . . . . . . 61614 ATCTTCTATTTCATAATAACTGTATCCTAATTTAATTATTTAGTTTATAAAATGAAAAGA I F Y F I I T V S - F N Y L V Y K M K R S S I S - - L Y P N L I I - F I K - K E N L L F H N N C I L I - L F S L - N E K . 61554 ATTTTATT I L F Y N F I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-8_AGS-1_PPS_1 (66261 66067,64707 64336,63797 63492,62167 62030) (frame '0'; 1008 bp, 336 residues) 1 RMASSSTTLG ISIRLGCSSN EHLMLVHPRS RTNIALLFHS YSSRLVTFSR RRNNSAITSS 61 NKKKKSPPRK DTEEVGDIDE DAFEALFQLL EEDLKNDELS LDDDDITEED LAKLERELEE 121 ALKDDELLGE IDSIANENTE SSMAKDEEAV AEDANGDDDD EDVDMLVKLK NWQLKKLAYA 181 LKKGRRKLNI KNLAADLCLD RAVVLEMLRN PPPNLVLLSA ALPDEPVPRM LEAASKPLET 241 VPIEMSDAVK PDAKVETPVH VMQSNWSAQK RLKKVQLETL EQVYRRSKRP TNAMISSIVH 301 VTNLPRRRVL KWFEERRSEE GVPAHRLPYQ PSSISE- PGL 9 (- strand): 73257 72574 AGS-1 (73257 72574) SCR (e 0.833) Exon 1 73257 72574 ( 684 n); score: 0.833 PGS (73257 72574) SGN-E241731- 3-phase translation of AGS-1 (-strand): . . . . . . 73257 TTATCTACTATATTTGAATATTGTGTTTATGGCTATGACTAACTAAACTTCATAACTAGG L S T I F E Y C V Y G Y D - L N F I T R Y L L Y L N I V F M A M T N - T S - L G I Y Y I - I L C L W L - L T K L H N - . . . . . . 73197 GTTGTGCGAACCATAGGCAAATAATGAGATAAACCCTAACTAATATAACAATTCTAGAAC V V R T I G K - - D K P - L I - Q F - N L C E P - A N N E I N P N - Y N N S R T G C A N H R Q I M R - T L T N I T I L E . . . . . . 73137 AGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAGTCCTTTTAACGGATGGCCAACG S V L H V L I I L S L R S P F N G W P T V S C M Y - - F F R L E V L L T D G Q R Q C L A C I N N S F A - K S F - R M A N . . . . . . 73077 TTAGAACTCGCCTTAATGCTACTTGCCGGACAAAGGAGGTAGATAATAAGAAAAGAATTA L E L A L M L L A G Q R R - I I R K E L - N S P - C Y L P D K G G R - - E K N Y V R T R L N A T C R T K E V D N K K R I . . . . . . 73017 TTAAAATAGATTTAGTGTATACTATCTAATAGGCTAGTATTGATTGGTACAAGGTAATAA L K - I - C I L S N R L V L I G T R - - - N R F S V Y Y L I G - Y - L V Q G N N I K I D L V Y T I - - A S I D W Y K V I . . . . . . 72957 CTTAGTTAAATATCGAATACGATGCTTATATGAGGTAAGGATAAGGGTTAGGATAGCAAC L S - I S N T M L I - G K D K G - D S N L V K Y R I R C L Y E V R I R V R I A T T - L N I E Y D A Y M R - G - G L G - Q . . . . . . 72897 ACACGTACCCAGACCAAGGTGCGGAGTGAGATTTTCTAGATGCCGGATCAAGGATTTAGA T R T Q T K V R S E I F - M P D Q G F R H V P R P R C G V R F S R C R I K D L E H T Y P D Q G A E - D F L D A G S R I - . . . . . . 72837 AATACATAACTTATCACTTTGTATGAAAGATACTAGGAAAGAATTGTTAGAGTTAGAGTT N T - L I T L Y E R Y - E R I V R V R V I H N L S L C M K D T R K E L L E L E L K Y I T Y H F V - K I L G K N C - S - S . . . . . . 72777 ATCAAGTTATGAACCTGTGGAAAACACGTAAACCCTAGTTACTTTGACTAATTGATTAAA I K L - T C G K H V N P S Y F D - L I K S S Y E P V E N T - T L V T L T N - L N Y Q V M N L W K T R K P - L L - L I D - . . . . . . 72717 TCCAACATTCAAAGTTGTTAAGTGTCTCTGTCAATTTTGTTAATTAATTTTACTCATTTA S N I Q S C - V S L S I L L I N F T H L P T F K V V K C L C Q F C - L I L L I - I Q H S K L L S V S V N F V N - F Y S F . . . . . . 72657 GAAATAGAAACCCCCATTTATTGTTTTTACTTTCCAAGGAAGTCACTGACCAAACAATAG E I E T P I Y C F Y F P R K S L T K Q - K - K P P F I V F T F Q G S H - P N N S R N R N P H L L F L L S K E V T D Q T I . . . 72597 TAATAACAGGTTGAAGTTAAGTCT - - Q V E V K S N N R L K L S V I T G - S - V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-9_AGS-1_PPS_1 (72974 72747) (frame '2'; 225 bp, 75 residues) 1 LVQGNNLVKY RIRCLYEVRI RVRIATHVPR PRCGVRFSRC RIKDLEIHNL SLCMKDTRKE 61 LLELELSSYE PVENT- 3-phase translation of AGS-1 (+strand): . . . . . . 72574 AGACTTAACTTCAACCTGTTATTACTATTGTTTGGTCAGTGACTTCCTTGGAAAGTAAAA R L N F N L L L L L F G Q - L P W K V K D L T S T C Y Y Y C L V S D F L G K - K T - L Q P V I T I V W S V T S L E S K . . . . . . 72634 ACAATAAATGGGGGTTTCTATTTCTAAATGAGTAAAATTAATTAACAAAATTGACAGAGA T I N G G F Y F - M S K I N - Q N - Q R Q - M G V S I S K - V K L I N K I D R D N N K W G F L F L N E - N - L T K L T E . . . . . . 72694 CACTTAACAACTTTGAATGTTGGATTTAATCAATTAGTCAAAGTAACTAGGGTTTACGTG H L T T L N V G F N Q L V K V T R V Y V T - Q L - M L D L I N - S K - L G F T C T L N N F E C W I - S I S Q S N - G L R . . . . . . 72754 TTTTCCACAGGTTCATAACTTGATAACTCTAACTCTAACAATTCTTTCCTAGTATCTTTC F S T G S - L D N S N S N N S F L V S F F P Q V H N L I T L T L T I L S - Y L S V F H R F I T - - L - L - Q F F P S I F . . . . . . 72814 ATACAAAGTGATAAGTTATGTATTTCTAAATCCTTGATCCGGCATCTAGAAAATCTCACT I Q S D K L C I S K S L I R H L E N L T Y K V I S Y V F L N P - S G I - K I S L H T K - - V M Y F - I L D P A S R K S H . . . . . . 72874 CCGCACCTTGGTCTGGGTACGTGTGTTGCTATCCTAACCCTTATCCTTACCTCATATAAG P H L G L G T C V A I L T L I L T S Y K R T L V W V R V L L S - P L S L P H I S S A P W S G Y V C C Y P N P Y P Y L I - . . . . . . 72934 CATCGTATTCGATATTTAACTAAGTTATTACCTTGTACCAATCAATACTAGCCTATTAGA H R I R Y L T K L L P C T N Q Y - P I R I V F D I - L S Y Y L V P I N T S L L D A S Y S I F N - V I T L Y Q S I L A Y - . . . . . . 72994 TAGTATACACTAAATCTATTTTAATAATTCTTTTCTTATTATCTACCTCCTTTGTCCGGC - Y T L N L F - - F F S Y Y L P P L S G S I H - I Y F N N S F L I I Y L L C P A I V Y T K S I L I I L F L L S T S F V R . . . . . . 73054 AAGTAGCATTAAGGCGAGTTCTAACGTTGGCCATCCGTTAAAAGGACTTCTAAGCGAAAG K - H - G E F - R W P S V K R T S K R K S S I K A S S N V G H P L K G L L S E R Q V A L R R V L T L A I R - K D F - A K . . . . . . 73114 AATTATTAATACATGCAAGACACTGTTCTAGAATTGTTATATTAGTTAGGGTTTATCTCA N Y - Y M Q D T V L E L L Y - L G F I S I I N T C K T L F - N C Y I S - G L S H E L L I H A R H C S R I V I L V R V Y L . . . . . . 73174 TTATTTGCCTATGGTTCGCACAACCCTAGTTATGAAGTTTAGTTAGTCATAGCCATAAAC L F A Y G S H N P S Y E V - L V I A I N Y L P M V R T T L V M K F S - S - P - T I I C L W F A Q P - L - S L V S H S H K . . . 73234 ACAATATTCAAATATAGTAGATAA T I F K Y S R - Q Y S N I V D H N I Q I - - I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-9_AGS-1_PPS_1 (72772 72984) (frame '1'; 210 bp, 70 residues) 1 LDNSNSNNSF LVSFIQSDKL CISKSLIRHL ENLTPHLGLG TCVAILTLIL TSYKHRIRYL 61 TKLLPCTNQY - PGL 10 (+ strand): 73935 76332 AGS-1 (73935 74164,74196 74275,75046 76013) SCR (e 0.846 d 0.697 a 0.000,e 0.725 d 0.000 a 0.000,e 0.923) Exon 1 73935 74164 ( 230 n); score: 0.846 Intron 1 74165 74195 ( 31 n); Pd: 0.697 Pa: 0.000 Exon 2 74196 74275 ( 80 n); score: 0.725 Intron 2 74276 75045 ( 770 n); Pd: 0.000 Pa: 0.000 Exon 3 75046 76013 ( 968 n); score: 0.923 PGS (73935 74164,74196 74275,75046 75312) SGN-E550629+ PGS (73935 74164,74196 74275,75046 75312) SGN-E550645+ PGS (73936 74164,74196 74275,75046 75125) SGN-E273427+ PGS (75111 75589) SGN-E322644- PGS (75137 75695) SGN-E346859- PGS (75141 75580) SGN-E243137- PGS (75165 75688) SGN-E540293+ PGS (75165 75680) SGN-E286708+ PGS (75178 75589) SGN-E258752- PGS (75194 75695) SGN-E551207- PGS (75214 75589) SGN-E255290- PGS (75271 75589) SGN-E258181- PGS (75299 76013) SGN-E578039+ PGS (75307 75715) SGN-E577891+ PGS (75335 75735) SGN-E261126- PGS (75393 75581) SGN-E546067- PGS (75424 75645) SGN-E356584+ 3-phase translation of AGS-1 (+strand): . . . . . . 73935 CTTCTAAGAGAAAGAATTATTAATACATGCATGACACTATTCTAGAATGTTATTTTAGTT L L R E R I I N T C M T L F - N V I L V F - E K E L L I H A - H Y S R M L F - L S K R K N Y - Y M H D T I L E C Y F S . . . . . . 73995 AGGGTTTATCTCATTATTTGCCTATGATTTCCACAACCCTAGTTATGGAGTTTAGTTACT R V Y L I I C L - F P Q P - L W S L V T G F I S L F A Y D F H N P S Y G V - L L - G L S H Y L P M I S T T L V M E F S Y . . . . . . 74055 CATAGCCATAAACACAATATTCAAATATAGTAGATAAGAATTCATGTACTTACTTCAATG H S H K H N I Q I - - I R I H V L T S M I A I N T I F K Y S R - E F M Y L L Q - S - P - T Q Y S N I V D K N S C T Y F N . . . . . : . 74115 AGAAAAACTAAAATCCAAAAGTTTGCTTGATTAATCTCCAAAAATCACTT : AAAAACTCTA R K T K I Q K F A - L I S K N H L : K T L E K L K S K S L L D - S P K I T : - K L - E K N - N P K V C L I N L Q K S L : K N S . . . . . . 74206 ATTATTATCAAGAATCTCACAATACAATGTTTACCAATACAGAGTTTAACAATCTAAGAG I I I K N L T I Q C L P I Q S L T I - E L L S R I S Q Y N V Y Q Y R V - Q S K S N Y Y Q E S H N T M F T N T E F N N L R . : . . . . . 74266 TCTAACTATC : ATCTGCCGTCTAACCTCAAAAATGAGGTATTTCGAACTATTTATAAAAAA S N Y : H L P S N L K N E V F R T I Y K K L T I : I C R L T S K M R Y F E L F I K N V - L S : S A V - P Q K - G I S N Y L - K . . . . . . 75096 TAAAAAACCTAATTAAACAAGGACTTTGTTTGCTGGAAATCTGCCAAAATGCAGCTAGGT - K T - L N K D F V C W K S A K M Q L G K K P N - T R T L F A G N L P K C S - V I K N L I K Q G L C L L E I C Q N A A R . . . . . . 75156 TGACGGACCTCGCGACGGATCGTCAGGGTCACGACGGACCATCATGGACTCCGTCGTACC - R T S R R I V R V T T D H H G L R R T D G P R D G S S G S R R T I M D S V V P L T D L A T D R Q G H D G P S W T P S Y . . . . . . 75216 ATACTTGTGCAATTTCTTTTGGTGCTCTTCTTCATTACCCTCGATGGCAAGTACGACGGA I L V Q F L L V L F F I T L D G K Y D G Y L C N F F W C S S S L P S M A S T T D H T C A I S F G A L L H Y P R W Q V R R . . . . . . 75276 CCGTCATAGGCACAACGGTCCGTCGAGGGTCTTCGTTTCAAAACACTTCAACTCTTGGAA P S - A Q R S V E G L R F K T L Q L L E R H R H N G P S R V F V S K H F N S W N T V I G T T V R R G S S F Q N T S T L G . . . . . . 75336 TCTGGGTACTGGATTACTTCTCTGATCTTCATGACGAACCTGCAGGACGGACCGTCATAT S G Y W I T S L I F M T N L Q D G P S Y L G T G L L L - S S - R T C R T D R H I I W V L D Y F S D L H D E P A G R T V I . . . . . . 75396 CCACGACAGACCGTAACAAGCTACGTAACCCCTCACTTGGTCAGACTTCCCCATCTTCCT P R Q T V T S Y V T P H L V R L P H L P H D R P - Q A T - P L T W S D F P I F L S T T D R N K L R N P S L G Q T S P S S . . . . . . 75456 TCAGCAGCTTCACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACTGTCATAAG S A A S L R C H L R T V T S T T D C H K Q Q L H Y A A T Y G P S Q A R R T V I S F S S F T T L P P T D R H K H D G L S - . . . . . . 75516 CTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACA L R R W S L L H F F A Q N L R I Q L W T S V G G L F C I S S L K I S A F S F G Q A P - V V S S A F L R S K S P H S A L D . . . . . . 75576 GATTTCCTACAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAAGTCTTTTGGAC D F L Q N K E K L I - K L A Q K S L L D I S Y K T K R N L Y K N - H K K V F W T R F P T K Q R E T Y I K I S T K K S F G . . . . . . 75636 ACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCT T L N L R K K Y - L Y R E T T V Y Q H P H - T - G K S I N Y T V K P R Y I N T L H T K L K E K V L I I P - N H G I S T P . . . . . . 75696 CAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACACACTACACAATCTTTGT Q L K F V V C P Q A T H Y D T L H N L C N L N S L F V L K R R T M T H Y T I F V S T - I R C L S S S D A L - H T T Q S L . . . . . . 75756 ACAATAGTATCCATGTTTTATCCTTTTCAATATTTGCCTATCAATCTCGATTAATCTCAT T I V S M F Y P F Q Y L P I N L D - S H Q - Y P C F I L F N I C L S I S I N L I Y N S I H V L S F S I F A Y Q S R L I S . . . . . . 75816 CAAATCTACGCGTGCTATCACTATTAGGCTTCAATTGTGTGGGATCAGAACATGACATAG Q I Y A C Y H Y - A S I V W D Q N M T - K S T R A I T I R L Q L C G I R T - H R S N L R V L S L L G F N C V G S E H D I . . . . . . 75876 GCTCACCATGCATTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGG A H H A L T P I L F N F S P R C - Q F R L T M H - H L S S S I S H R G A N N S G G S P C I N T Y P L Q F L T E V L T I P . . . . . . 75936 TATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCATTTTTCACACAATGATTTCAG Y C N - C P H F K T K S S F F T Q - F Q I A T S V L T L K Q N P H F S H N D F S V L Q L V S S L - N K I L I F H T M I S . . 75996 TTCGAGTATAAAGATTAC F E Y K D Y S S I K I V R V - R L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-1_PPS_1 (75092 75514) (frame '0'; 420 bp, 140 residues) 1 KIKNLIKQGL CLLEICQNAA RLTDLATDRQ GHDGPSWTPS YHTCAISFGA LLHYPRWQVR 61 RTVIGTTVRR GSSFQNTSTL GIWVLDYFSD LHDEPAGRTV ISTTDRNKLR NPSLGQTSPS 121 SFSSFTTLPP TDRHKHDGLS - >C08HBa0027D09.1+_PGL-10_AGS-1_PPS_2 (75737 75961) (frame '0'; 222 bp, 74 residues) 1 HTTQSLYNSI HVLSFSIFAY QSRLISSNLR VLSLLGFNCV GSEHDIGSPC INTYPLQFLT 61 EVLTIPVLQL VSSL- AGS-2 (73978 74164,74196 74272,74997 75497) SCR (e 0.829 d 0.697 a 0.000,e 0.584 d 0.000 a 0.000,e 0.797) Exon 1 73978 74164 ( 187 n); score: 0.829 Intron 1 74165 74195 ( 31 n); Pd: 0.697 Pa: 0.000 Exon 2 74196 74272 ( 77 n); score: 0.584 Intron 2 74273 74996 ( 724 n); Pd: 0.000 Pa: 0.000 Exon 3 74997 75497 ( 501 n); score: 0.797 PGS (73978 74164,74196 74272,74997 75497) SGN-E349968- 3-phase translation of AGS-2 (+strand): . . . . . . 73978 AGAATGTTATTTTAGTTAGGGTTTATCTCATTATTTGCCTATGATTTCCACAACCCTAGT R M L F - L G F I S L F A Y D F H N P S E C Y F S - G L S H Y L P M I S T T L V N V I L V R V Y L I I C L - F P Q P - . . . . . . 74038 TATGGAGTTTAGTTACTCATAGCCATAAACACAATATTCAAATATAGTAGATAAGAATTC Y G V - L L I A I N T I F K Y S R - E F M E F S Y S - P - T Q Y S N I V D K N S L W S L V T H S H K H N I Q I - - I R I . . . . . . 74098 ATGTACTTACTTCAATGAGAAAAACTAAAATCCAAAAGTTTGCTTGATTAATCTCCAAAA M Y L L Q - E K L K S K S L L D - S P K C T Y F N E K N - N P K V C L I N L Q K H V L T S M R K T K I Q K F A - L I S K . : . . . . . 74158 ATCACTT : AAAAACTCTAATTATTATCAAGAATCTCACAATACAATGTTTACCAATACAGA I T : - K L - L L S R I S Q Y N V Y Q Y R S L : K N S N Y Y Q E S H N T M F T N T E N H L : K T L I I I K N L T I Q C L P I Q . . . : . . . 74249 GTTTAACAATCTAAGAGTCTAACT : CAATAAGGAATTTTACAATCTAAGAGTCTAACCTAA V - Q S K S L T : Q - G I L Q S K S L T - F N N L R V - L : N K E F Y N L R V - P N S L T I - E S N : S I R N F T I - E S N L . . . . . . 75033 CAGAGTCCAACCTATCTGCCGTCTAACCTCAAAAATGAGGTATTTCGAACTATTTATAAA Q S P T Y L P S N L K N E V F R T I Y K R V Q P I C R L T S K M R Y F E L F I K T E S N L S A V - P Q K - G I S N Y L - . . . . . . 75093 AAATAAAAAACCTAATTAAACAAGGACTTTGTTTGCTGGAAATCTGCCAAAATGCAGCTA K - K T - L N K D F V C W K S A K M Q L N K K P N - T R T L F A G N L P K C S - K I K N L I K Q G L C L L E I C Q N A A . . . . . . 75153 GGTTGACGGACCTCGCGACGGATCGTCAGGGTCACGACGGACCATCATGGACTCCGTCGT G - R T S R R I V R V T T D H H G L R R V D G P R D G S S G S R R T I M D S V V R L T D L A T D R Q G H D G P S W T P S . . . . . . 75213 ACCATACTTGTGCAATTTCTTTTGGTGCTCTTCTTCATTACCCTCGATGGCAAGTACGAC T I L V Q F L L V L F F I T L D G K Y D P Y L C N F F W C S S S L P S M A S T T Y H T C A I S F G A L L H Y P R W Q V R . . . . . . 75273 GGACCGTCATAGGCACAACGGTCCGTCGAGGGTCTTCGTTTCAAAACACTTCAACTCTTG G P S - A Q R S V E G L R F K T L Q L L D R H R H N G P S R V F V S K H F N S W R T V I G T T V R R G S S F Q N T S T L . . . . . . 75333 GAATCTGGGTACTGGATTACTTCTCTGATCTTCATGACGAACCTGCAGGACGGACCGTCA E S G Y W I T S L I F M T N L Q D G P S N L G T G L L L - S S - R T C R T D R H G I W V L D Y F S D L H D E P A G R T V . . . . . . 75393 TATCCACGACAGACCGTAACAAGCTACGTAACCCCTCACTTGGTCAGACTTCCCCATCTT Y P R Q T V T S Y V T P H L V R L P H L I H D R P - Q A T - P L T W S D F P I F I S T T D R N K L R N P S L G Q T S P S . . . . . 75453 CCTTCAGCAGCTTCACTACGCTGCCACCTACGGACCGTCACAAGC P S A A S L R C H L R T V T S L Q Q L H Y A A T Y G P S Q S F S S F T T L P P T D R H K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-2_PPS_1 (75092 75496) (frame '0'; 405 bp, 135 residues) 1 KIKNLIKQGL CLLEICQNAA RLTDLATDRQ GHDGPSWTPS YHTCAISFGA LLHYPRWQVR 61 RTVIGTTVRR GSSFQNTSTL GIWVLDYFSD LHDEPAGRTV ISTTDRNKLR NPSLGQTSPS 121 SFSSFTTLPP TDRHK AGS-3 (74123 74256,75046 75589) SCR (e 0.858 d 0.000 a 0.000,e 0.869) Exon 1 74123 74256 ( 134 n); score: 0.858 Intron 1 74257 75045 ( 789 n); Pd: 0.000 Pa: 0.000 Exon 2 75046 75589 ( 544 n); score: 0.869 PGS (74123 74256,75046 75589) SGN-E369291- PGS (74123 74256,75046 75583) SGN-E369290+ PGS (74155 74256,75046 75589) SGN-E261921- 3-phase translation of AGS-3 (+strand): . . . . . . 74123 TAAAATCCAAAAGTTTGCTTGATTAATCTCCAAAAATCACTTGCAAGAATCTCAAAGTAA - N P K V C L I N L Q K S L A R I S K - K I Q K F A - L I S K N H L Q E S Q S N K S K S L L D - S P K I T C K N L K V . . . . . . 74183 TCAATAATCTCACAAAAACTCTAATTATTATCAAGAATCTCACAATACAATGTTTACCAA S I I S Q K L - L L S R I S Q Y N V Y Q Q - S H K N S N Y Y Q E S H N T M F T N I N N L T K T L I I I K N L T I Q C L P . . : . . . . 74243 TACAGAGTTTAACA : ATCTGCCGTCTAACCTCAAAAATGAGGTATTTCGAACTATTTATAA Y R V - Q : S A V - P Q K - G I S N Y L - T E F N : N L P S N L K N E V F R T I Y K I Q S L T : I C R L T S K M R Y F E L F I . . . . . . 75092 AAAATAAAAAACCTAATTAAACAAGGACTTTGTTTGCTGGAAATCTGCCAAAATGCAGCT K I K N L I K Q G L C L L E I C Q N A A K - K T - L N K D F V C W K S A K M Q L K N K K P N - T R T L F A G N L P K C S . . . . . . 75152 AGGTTGACGGACCTCGCGACGGATCGTCAGGGTCACGACGGACCATCATGGACTCCGTCG R L T D L A T D R Q G H D G P S W T P S G - R T S R R I V R V T T D H H G L R R - V D G P R D G S S G S R R T I M D S V . . . . . . 75212 TACCATACTTGTGCAATTTCTTTTGGTGCTCTTCTTCATTACCCTCGATGGCAAGTACGA Y H T C A I S F G A L L H Y P R W Q V R T I L V Q F L L V L F F I T L D G K Y D V P Y L C N F F W C S S S L P S M A S T . . . . . . 75272 CGGACCGTCATAGGCACAACGGTCCGTCGAGGGTCTTCGTTTCAAAACACTTCAACTCTT R T V I G T T V R R G S S F Q N T S T L G P S - A Q R S V E G L R F K T L Q L L T D R H R H N G P S R V F V S K H F N S . . . . . . 75332 GGAATCTGGGTACTGGATTACTTCTCTGATCTTCATGACGAACCTGCAGGACGGACCGTC G I W V L D Y F S D L H D E P A G R T V E S G Y W I T S L I F M T N L Q D G P S W N L G T G L L L - S S - R T C R T D R . . . . . . 75392 ATATCCACGACAGACCGTAACAAGCTACGTAACCCCTCACTTGGTCAGACTTCCCCATCT I S T T D R N K L R N P S L G Q T S P S Y P R Q T V T S Y V T P H L V R L P H L H I H D R P - Q A T - P L T W S D F P I . . . . . . 75452 TCCTTCAGCAGCTTCACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACTGTCA S F S S F T T L P P T D R H K H D G L S P S A A S L R C H L R T V T S T T D C H F L Q Q L H Y A A T Y G P S Q A R R T V . . . . . . 75512 TAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTG - A P - V V S S A F L R S K S P H S A L K L R R W S L L H F F A Q N L R I Q L W I S S V G G L F C I S S L K I S A F S F . . 75572 GACAGATTTCCTACAAAA D R F P T K T D F L Q G Q I S Y K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-3_PPS_1 (75092 75514) (frame '1'; 420 bp, 140 residues) 1 KIKNLIKQGL CLLEICQNAA RLTDLATDRQ GHDGPSWTPS YHTCAISFGA LLHYPRWQVR 61 RTVIGTTVRR GSSFQNTSTL GIWVLDYFSD LHDEPAGRTV ISTTDRNKLR NPSLGQTSPS 121 SFSSFTTLPP TDRHKHDGLS - AGS-4 (74123 74233,74953 74975,75053 75583) SCR (e 0.856 d 0.000 a 0.000,e 0.783 d 0.000 a 0.000,e 0.874) Exon 1 74123 74233 ( 111 n); score: 0.856 Intron 1 74234 74952 ( 719 n); Pd: 0.000 Pa: 0.000 Exon 2 74953 74975 ( 23 n); score: 0.783 Intron 2 74976 75052 ( 77 n); Pd: 0.000 Pa: 0.000 Exon 3 75053 75583 ( 531 n); score: 0.874 PGS (74123 74233,74953 74975,75053 75583) SGN-E546519+ 3-phase translation of AGS-4 (+strand): . . . . . . 74123 TAAAATCCAAAAGTTTGCTTGATTAATCTCCAAAAATCACTTGCAAGAATCTCAAAGTAA - N P K V C L I N L Q K S L A R I S K - K I Q K F A - L I S K N H L Q E S Q S N K S K S L L D - S P K I T C K N L K V . . . . . . : 74183 TCAATAATCTCACAAAAACTCTAATTATTATCAAGAATCTCACAATACAAT : AAAAAGACT S I I S Q K L - L L S R I S Q Y N : K K T Q - S H K N S N Y Y Q E S H N T I : K R L I N N L T K T L I I I K N L T I Q : - K D . . : . . . . 74962 AATGATTATCAAGA : GTCTAACCTCAAAAATGAGGTATTTCGAACTATTTATAAAAAATAA N D Y Q E : S N L K N E V F R T I Y K K - M I I K : S L T S K M R Y F E L F I K N K - - L S R : V - P Q K - G I S N Y L - K I . . . . . . 75099 AAAACCTAATTAAACAAGGACTTTGTTTGCTGGAAATCTGCCAAAATGCAGCTAGGTTGA K T - L N K D F V C W K S A K M Q L G - K P N - T R T L F A G N L P K C S - V D K N L I K Q G L C L L E I C Q N A A R L . . . . . . 75159 CGGACCTCGCGACGGATCGTCAGGGTCACGACGGACCATCATGGACTCCGTCGTACCATA R T S R R I V R V T T D H H G L R R T I G P R D G S S G S R R T I M D S V V P Y T D L A T D R Q G H D G P S W T P S Y H . . . . . . 75219 CTTGTGCAATTTCTTTTGGTGCTCTTCTTCATTACCCTCGATGGCAAGTACGACGGACCG L V Q F L L V L F F I T L D G K Y D G P L C N F F W C S S S L P S M A S T T D R T C A I S F G A L L H Y P R W Q V R R T . . . . . . 75279 TCATAGGCACAACGGTCCGTCGAGGGTCTTCGTTTCAAAACACTTCAACTCTTGGAATCT S - A Q R S V E G L R F K T L Q L L E S H R H N G P S R V F V S K H F N S W N L V I G T T V R R G S S F Q N T S T L G I . . . . . . 75339 GGGTACTGGATTACTTCTCTGATCTTCATGACGAACCTGCAGGACGGACCGTCATATCCA G Y W I T S L I F M T N L Q D G P S Y P G T G L L L - S S - R T C R T D R H I H W V L D Y F S D L H D E P A G R T V I S . . . . . . 75399 CGACAGACCGTAACAAGCTACGTAACCCCTCACTTGGTCAGACTTCCCCATCTTCCTTCA R Q T V T S Y V T P H L V R L P H L P S D R P - Q A T - P L T W S D F P I F L Q T T D R N K L R N P S L G Q T S P S S F . . . . . . 75459 GCAGCTTCACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACTGTCATAAGCTC A A S L R C H L R T V T S T T D C H K L Q L H Y A A T Y G P S Q A R R T V I S S S S F T T L P P T D R H K H D G L S - A . . . . . . 75519 CGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGAT R R W S L L H F F A Q N L R I Q L W T D V G G L F C I S S L K I S A F S F G Q I P - V V S S A F L R S K S P H S A L D R . 75579 TTCCT F S F P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-4_PPS_1 (75092 75514) (frame '0'; 420 bp, 140 residues) 1 KIKNLIKQGL CLLEICQNAA RLTDLATDRQ GHDGPSWTPS YHTCAISFGA LLHYPRWQVR 61 RTVIGTTVRR GSSFQNTSTL GIWVLDYFSD LHDEPAGRTV ISTTDRNKLR NPSLGQTSPS 121 SFSSFTTLPP TDRHKHDGLS - AGS-5 (74123 74277,75034 75230) SCR (e 0.774 d 0.000 a 0.000,e 0.838) Exon 1 74123 74277 ( 155 n); score: 0.774 Intron 1 74278 75033 ( 756 n); Pd: 0.000 Pa: 0.000 Exon 2 75034 75230 ( 197 n); score: 0.838 PGS (74123 74277,75034 75230) SGN-E357596- 3-phase translation of AGS-5 (+strand): . . . . . . 74123 TAAAATCCAAAAGTTTGCTTGATTAATCTCCAAAAATCACTTGCAAGAATCTCAAAGTAA - N P K V C L I N L Q K S L A R I S K - K I Q K F A - L I S K N H L Q E S Q S N K S K S L L D - S P K I T C K N L K V . . . . . . 74183 TCAATAATCTCACAAAAACTCTAATTATTATCAAGAATCTCACAATACAATGTTTACCAA S I I S Q K L - L L S R I S Q Y N V Y Q Q - S H K N S N Y Y Q E S H N T M F T N I N N L T K T L I I I K N L T I Q C L P . . . . : . . 74243 TACAGAGTTTAACAATCTAAGAGTCTAACTATCTG : AGAGTCCAACCTATCTGCCGTCTAA Y R V - Q S K S L T I - : E S N L S A V - T E F N N L R V - L S : E S P T Y L P S N I Q S L T I - E S N Y L : R V Q P I C R L . . . . . . 75059 CCTCAAAAATGAGGTATTTCGAACTATTTATAAAAAATAAAAAACCTAATTAAACAAGGA P Q K - G I S N Y L - K I K N L I K Q G L K N E V F R T I Y K K - K T - L N K D T S K M R Y F E L F I K N K K P N - T R . . . . . . 75119 CTTTGTTTGCTGGAAATCTGCCAAAATGCAGCTAGGTTGACGGACCTCGCGACGGATCGT L C L L E I C Q N A A R L T D L A T D R F V C W K S A K M Q L G - R T S R R I V T L F A G N L P K C S - V D G P R D G S . . . . . . 75179 CAGGGTCACGACGGACCATCATGGACTCCGTCGTACCATACTTGTGCAATTT Q G H D G P S W T P S Y H T C A I R V T T D H H G L R R T I L V Q F S G S R R T I M D S V V P Y L C N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-6 (74180 74487,75262 75669) SCR (e 0.888 d 0.999 a 0.000,e 0.915) Exon 1 74180 74487 ( 308 n); score: 0.888 Intron 1 74488 75261 ( 774 n); Pd: 0.999 Pa: 0.000 Exon 2 75262 75669 ( 408 n); score: 0.915 PGS (74180 74487,75262 75581) SGN-E546025+ PGS (74449 74487,75262 75669) SGN-E243969+ 3-phase translation of AGS-6 (+strand): . . . . . . 74180 TAATCAATAATCTCACAAAAACTCTAATTATTATCAAGAATCTCACAATACAATGTTTAC - S I I S Q K L - L L S R I S Q Y N V Y N Q - S H K N S N Y Y Q E S H N T M F T I N N L T K T L I I I K N L T I Q C L . . . . . . 74240 CAATACAGAGTTTAACAATCTAAGAGTCTAACTATCTGGTGTCTAACCTCAAAAACAAGT Q Y R V - Q S K S L T I W C L T S K T S N T E F N N L R V - L S G V - P Q K Q V P I Q S L T I - E S N Y L V S N L K N K . . . . . . 74300 TTTTTCGAACTATTTATAAAAAAACAAAAACCTAATTAAACGAGGATTCTAATTGCTGGA F F E L F I K K Q K P N - T R I L I A G F S N Y L - K N K N L I K R G F - L L D F F R T I Y K K T K T - L N E D S N C W . . . . . . 74360 TATCTACCAAAACACGGCTGGGTCGACGGACCTCGCGAAGGACTATCGTGGTCACAACGG Y L P K H G W V D G P R E G L S W S Q R I Y Q N T A G S T D L A K D Y R G H N G I S T K T R L G R R T S R R T I V V T T . . . . . . 74420 ACCGTCATGGACTCCGTCATCCCATACTTGTGCAATTTCTTCTGCTGCTCTCTTCATTCC T V M D S V I P Y L C N F F C C S L H S P S W T P S S H T C A I S S A A L F I P D R H G L R H P I L V Q F L L L L S S F . : . . . . . 74480 CCTTGACG : GCAAGTACGACGGACCGTCATAGGCACAACGGTCCGTCGAGGGTCTTCGTTT P - R : Q V R R T V I G T T V R R G S S F L D : G K Y D G P S - A Q R S V E G L R F P L T : A S T T D R H R H N G P S R V F V . . . . . . 75314 CAAAACACTTCAACTCTTGGAATCTGGGTACTGGATTACTTCTCTGATCTTCATGACGAA Q N T S T L G I W V L D Y F S D L H D E K T L Q L L E S G Y W I T S L I F M T N S K H F N S W N L G T G L L L - S S - R . . . . . . 75374 CCTGCAGGACGGACCGTCATATCCACGACAGACCGTAACAAGCTACGTAACCCCTCACTT P A G R T V I S T T D R N K L R N P S L L Q D G P S Y P R Q T V T S Y V T P H L T C R T D R H I H D R P - Q A T - P L T . . . . . . 75434 GGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCACTACGCTGCCACCTACGGACCGTCAC G Q T S P S S F S S F T T L P P T D R H V R L P H L P S A A S L R C H L R T V T W S D F P I F L Q Q L H Y A A T Y G P S . . . . . . 75494 AAGCACGACGGACTGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAA K H D G L S - A P - V V S S A F L R S K S T T D C H K L R R W S L L H F F A Q N Q A R R T V I S S V G G L F C I S S L K . . . . . . 75554 TCTCCGCATTCAGCTTTGGACAGATTTCCTACAAAACAAAGAGAAACTTATATAAAAATT S P H S A L D R F P T K Q R E T Y I K I L R I Q L W T D F L Q N K E K L I - K L I S A F S F G Q I S Y K T K R N L Y K N . . . . . . 75614 AGCACAAAAAAGTCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATACC S T K K S F G H T K L K E K V L I I A Q K S L L D T L N L R K K Y - L Y - H K K V F W T H - T - G K S I N Y T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-6_PPS_1 (75285 75608) (frame '2'; 321 bp, 107 residues) 1 AQRSVEGLRF KTLQLLESGY WITSLIFMTN LQDGPSYPRQ TVTSYVTPHL VRLPHLPSAA 61 SLRCHLRTVT STTDCHKLRR WSLLHFFAQN LRIQLWTDFL QNKEKLI- AGS-7 (74248 74314,75086 75296,75345 75583) SCR (e 0.739 d 0.000 a 0.000,e 0.787 d 0.000 a 0.000,e 0.837) Exon 1 74248 74314 ( 67 n); score: 0.739 Intron 1 74315 75085 ( 771 n); Pd: 0.000 Pa: 0.000 Exon 2 75086 75296 ( 211 n); score: 0.787 Intron 2 75297 75344 ( 48 n); Pd: 0.000 Pa: 0.000 Exon 3 75345 75583 ( 239 n); score: 0.837 PGS (74248 74314,75086 75296,75345 75583) SGN-E546250+ 3-phase translation of AGS-7 (+strand): . . . . . . 74248 AGTTTAACAATCTAAGAGTCTAACTATCTGGTGTCTAACCTCAAAAACAAGTTTTTTCGA S L T I - E S N Y L V S N L K N K F F R V - Q S K S L T I W C L T S K T S F F E F N N L R V - L S G V - P Q K Q V F S . : . . . . . 74308 ACTATTT : TTATAAAAAATAAAAAACCTAATTAAACAAGGACTTTGTTTGCTGGAAATCTG T I : F I K N K K P N - T R T L F A G N L L F : L - K I K N L I K Q G L C L L E I C N Y F : Y K K - K T - L N K D F V C W K S . . . . . . 75139 CCAAAATGCAGCTAGGTTGACGGACCTCGCGACGGATCGTCAGGGTCACGACGGACCATC P K C S - V D G P R D G S S G S R R T I Q N A A R L T D L A T D R Q G H D G P S A K M Q L G - R T S R R I V R V T T D H . . . . . . 75199 ATGGACTCCGTCGTACCATACTTGTGCAATTTCTTTTGGTGCTCTTCTTCATTACCCTCG M D S V V P Y L C N F F W C S S S L P S W T P S Y H T C A I S F G A L L H Y P R H G L R R T I L V Q F L L V L F F I T L . . . . : . . 75259 ATGGCAAGTACGACGGACCGTCATAGGCACAACGGTCC : TGGATTACTTCTCTGATCTTCA M A S T T D R H R H N G P : G L L L - S S W Q V R R T V I G T T V : L D Y F S D L H D G K Y D G P S - A Q R S : W I T S L I F . . . . . . 75367 TGACGAACCTGCAGGACGGACCGTCATATCCACGACAGACCGTAACAAGCTACGTAACCC - R T C R T D R H I H D R P - Q A T - P D E P A G R T V I S T T D R N K L R N P M T N L Q D G P S Y P R Q T V T S Y V T . . . . . . 75427 CTCACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCACTACGCTGCCACCTACGGA L T W S D F P I F L Q Q L H Y A A T Y G S L G Q T S P S S F S S F T T L P P T D P H L V R L P H L P S A A S L R C H L R . . . . . . 75487 CCGTCACAAGCACGACGGACTGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCG P S Q A R R T V I S S V G G L F C I S S R H K H D G L S - A P - V V S S A F L R T V T S T T D C H K L R R W S L L H F F . . . . 75547 CTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCT L K I S A F S F G Q I S S K S P H S A L D R F P A Q N L R I Q L W T D F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-7_PPS_1 (75092 75296,75345 75514) (frame '2'; 372 bp, 124 residues) 1 KIKNLIKQGL CLLEICQNAA RLTDLATDRQ GHDGPSWTPS YHTCAISFGA LLHYPRWQVR 61 RTVIGTTVLD YFSDLHDEPA GRTVISTTDR NKLRNPSLGQ TSPSSFSSFT TLPPTDRHKH 121 DGLS- AGS-8 (74392 74903) SCR (e 0.908) Exon 1 74392 74903 ( 512 n); score: 0.908 PGS (74392 74903) SGN-E286708+ 3-phase translation of AGS-8 (+strand): . . . . . . 74392 TCGCGAAGGACTATCGTGGTCACAACGGACCGTCATGGACTCCGTCATCCCATACTTGTG S R R T I V V T T D R H G L R H P I L V R E G L S W S Q R T V M D S V I P Y L C A K D Y R G H N G P S W T P S S H T C . . . . . . 74452 CAATTTCTTCTGCTGCTCTCTTCATTCCCCTTGACGGCAAGTATGACGGACCGTCATAGG Q F L L L L S S F P L T A S M T D R H R N F F C C S L H S P - R Q V - R T V I G A I S S A A L F I P L D G K Y D G P S - . . . . . . 74512 CACAACGGTCCGTCGAGGGTCTTCGTTTCAAAACACTTCAACACTTGGAATCTGGGTACT H N G P S R V F V S K H F N T W N L G T T T V R R G S S F Q N T S T L G I W V L A Q R S V E G L R F K T L Q H L E S G Y . . . . . . 74572 GGATCACTTCTCTGAACTTCATGACAAACCTGCAGGACGGACCGTCATAGACATGACGGA G S L L - T S - Q T C R T D R H R H D G D H F S E L H D K P A G R T V I D M T D W I T S L N F M T N L Q D G P S - T - R . . . . . . 74632 CCGTCACAAGCTTCGTAACCCACACTTGGCCAGACTTCCCCACTTCCTTCAGCAGCTGCA P S Q A S - P T L G Q T S P L P S A A A R H K L R N P H L A R L P H F L Q Q L H T V T S F V T H T W P D F P T S F S S C . . . . . . 74692 CTACGCTGCCACCTACGGACCGTCGCAAGCACGACGGACCGTCATAAGCTCCGTAGGTGG L R C H L R T V A S T T D R H K L R R W Y A A T Y G P S Q A R R T V I S S V G G T T L P P T D R R K H D G P S - A P - V . . . . . . 74752 TCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAA S L L H F F A Q N L R I Q L W T D F L Q L F C I S S L K I S A F S F G Q I S C K V S S A F L R S K S P H S A L D R F P A . . . . . . 74812 AATAAAGAGAAACTTATATAAAAATTAGCATAAAAAGACTTTTAGACAGACTAAACTTAA N K E K L I - K L A - K D F - T D - T - I K R N L Y K N - H K K T F R Q T K L K K - R E T Y I K I S I K R L L D R L N L . . . . 74872 GGAAAAAGTATTAATTATACCGTGAAACCACG G K S I N Y T V K P E K V L I I P - N H R K K Y - L Y R E T T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-8_PPS_1 (74498 74839) (frame '2'; 339 bp, 113 residues) 1 RTVIGTTVRR GSSFQNTSTL GIWVLDHFSE LHDKPAGRTV IDMTDRHKLR NPHLARLPHF 61 LQQLHYAATY GPSQARRTVI SSVGGLFCIS SLKISAFSFG QISCKIKRNL YKN- 3-phase translation of AGS-8 (-strand): . . . . . . 74903 CGTGGTTTCACGGTATAATTAATACTTTTTCCTTAAGTTTAGTCTGTCTAAAAGTCTTTT R G F T V - L I L F P - V - S V - K S F V V S R Y N - Y F F L K F S L S K S L F W F H G I I N T F S L S L V C L K V F . . . . . . 74843 TATGCTAATTTTTATATAAGTTTCTCTTTATTTTGCAGGAAATCTGTCCAAAGCTGAATG Y A N F Y I S F S L F C R K S V Q S - M M L I F I - V S L Y F A G N L S K A E C L C - F L Y K F L F I L Q E I C P K L N . . . . . . 74783 CGGAGATTTTGAGCGAAGAAATGCAGAAGAGACCACCTACGGAGCTTATGACGGTCCGTC R R F - A K K C R R D H L R S L - R S V G D F E R R N A E E T T Y G A Y D G P S A E I L S E E M Q K R P P T E L M T V R . . . . . . 74723 GTGCTTGCGACGGTCCGTAGGTGGCAGCGTAGTGCAGCTGCTGAAGGAAGTGGGGAAGTC V L A T V R R W Q R S A A A E G S G E V C L R R S V G G S V V Q L L K E V G K S R A C D G P - V A A - C S C - R K W G S . . . . . . 74663 TGGCCAAGTGTGGGTTACGAAGCTTGTGACGGTCCGTCATGTCTATGACGGTCCGTCCTG W P S V G Y E A C D G P S C L - R S V L G Q V W V T K L V T V R H V Y D G P S C L A K C G L R S L - R S V M S M T V R P . . . . . . 74603 CAGGTTTGTCATGAAGTTCAGAGAAGTGATCCAGTACCCAGATTCCAAGTGTTGAAGTGT Q V C H E V Q R S D P V P R F Q V L K C R F V M K F R E V I Q Y P D S K C - S V A G L S - S S E K - S S T Q I P S V E V . . . . . . 74543 TTTGAAACGAAGACCCTCGACGGACCGTTGTGCCTATGACGGTCCGTCATACTTGCCGTC F E T K T L D G P L C L - R S V I L A V L K R R P S T D R C A Y D G P S Y L P S F - N E D P R R T V V P M T V R H T C R . . . . . . 74483 AAGGGGAATGAAGAGAGCAGCAGAAGAAATTGCACAAGTATGGGATGACGGAGTCCATGA K G N E E S S R R N C T S M G - R S P - R G M K R A A E E I A Q V W D D G V H D Q G E - R E Q Q K K L H K Y G M T E S M . . . . 74423 CGGTCCGTTGTGACCACGATAGTCCTTCGCGA R S V V T T I V L R G P L - P R - S F A T V R C D H D S P S R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-10_AGS-8_PPS_1 (74824 74549) (frame '2'; 273 bp, 91 residues) 1 VSLYFAGNLS KAECGDFERR NAEETTYGAY DGPSCLRRSV GGSVVQLLKE VGKSGQVWVT 61 KLVTVRHVYD GPSCRFVMKF REVIQYPDSK C- AGS-9 (74416 74695,75465 75851) SCR (e 0.721 d 0.000 a 0.000,e 0.814) Exon 1 74416 74695 ( 280 n); score: 0.721 Intron 1 74696 75464 ( 769 n); Pd: 0.000 Pa: 0.000 Exon 2 75465 75851 ( 387 n); score: 0.814 PGS (74416 74695,75465 75851) SGN-E352282+ 3-phase translation of AGS-9 (+strand): . . . . . . 74416 ACGGACCGTCATGGACTCCGTCATCCCATACTTGTGCAATTTCTTCTGCTGCTCTCTTCA T D R H G L R H P I L V Q F L L L L S S R T V M D S V I P Y L C N F F C C S L H G P S W T P S S H T C A I S S A A L F . . . . . . 74476 TTCCCCTTGACGGCAAGTATGACGGACCGTCATAGGCACAACGGTCCGTCGAGGGTCTTC F P L T A S M T D R H R H N G P S R V F S P - R Q V - R T V I G T T V R R G S S I P L D G K Y D G P S - A Q R S V E G L . . . . . . 74536 GTTTCAAAACACTTCAACACTTGGAATCTGGGTACTGGATCACTTCTCTGAACTTCATGA V S K H F N T W N L G T G S L L - T S - F Q N T S T L G I W V L D H F S E L H D R F K T L Q H L E S G Y W I T S L N F M . . . . . . 74596 CAAACCTGCAGGACGGACCGTCATAGACATGACGGACCGTCACAAGCTTCGTAACCCACA Q T C R T D R H R H D G P S Q A S - P T K P A G R T V I D M T D R H K L R N P H T N L Q D G P S - T - R T V T S F V T H . . . . : . . 74656 CTTGGCCAGACTTCCCCACTTCCTTCAGCAGCTGCACTAC : TCACTACGCTGCCACCTACG L G Q T S P L P S A A A L : L T T L P P T L A R L P H F L Q Q L H Y : S L R C H L R T W P D F P T S F S S C T T : H Y A A T Y . . . . . . 75485 GACCGTCACAAGCACGACGGACTGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTT D R H K H D G L S - A P - V V S S A F L T V T S T T D C H K L R R W S L L H F F G P S Q A R R T V I S S V G G L F C I S . . . . . . 75545 CGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTACAAAACAAAGAGAAACTTAT R S K S P H S A L D R F P T K Q R E T Y A Q N L R I Q L W T D F L Q N K E K L I S L K I S A F S F G Q I S Y K T K R N L . . . . . . 75605 ATAAAAATTAGCACAAAAAAGTCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATT I K I S T K K S F G H T K L K E K V L I - K L A Q K S L L D T L N L R K K Y - L Y K N - H K K V F W T H - T - G K S I N . . . . . . 75665 ATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGC I P - N H G I S T P S T - I R C L S S S Y R E T T V Y Q H P Q L K F V V C P Q A Y T V K P R Y I N T L N L N S L F V L K . . . . . . 75725 GACGCACTATGACACACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTTCA D A L - H T T Q S L Y N S I H V L S F S T H Y D T L H N L C T I V S M F Y P F Q R R T M T H Y T I F V Q - Y P C F I L F . . . . . . 75785 ATATTTGCCTATCAATCTCGATTAATCTCATCAAATCTACGCGTGCTATCACTATTAGGC I F A Y Q S R L I S S N L R V L S L L G Y L P I N L D - S H Q I Y A C Y H Y - A N I C L S I S I N L I K S T R A I T I R . 75845 TTCAATT F N S I L Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-9_PPS_1 (74498 74695,75465 75608) (frame '2'; 339 bp, 113 residues) 1 RTVIGTTVRR GSSFQNTSTL GIWVLDHFSE LHDKPAGRTV IDMTDRHKLR NPHLARLPHF 61 LQQLHYSLRC HLRTVTSTTD CHKLRRWSLL HFFAQNLRIQ LWTDFLQNKE KLI- AGS-10 (74579 74808,75117 75140,75732 75753) SCR (e 0.826 d 0.000 a 0.507,e 0.625 d 0.000 a 0.000,e 0.727) Exon 1 74579 74808 ( 230 n); score: 0.826 Intron 1 74809 75116 ( 308 n); Pd: 0.000 Pa: 0.507 Exon 2 75117 75140 ( 24 n); score: 0.625 Intron 2 75141 75731 ( 591 n); Pd: 0.000 Pa: 0.000 Exon 3 75732 75753 ( 22 n); score: 0.727 PGS (74579 74808,75117 75140,75732 75753) SGN-E546251- 3-phase translation of AGS-10 (+strand): . . . . . . 74579 TTCTCTGAACTTCATGACAAACCTGCAGGACGGACCGTCATAGACATGACGGACCGTCAC F S E L H D K P A G R T V I D M T D R H S L N F M T N L Q D G P S - T - R T V T L - T S - Q T C R T D R H R H D G P S . . . . . . 74639 AAGCTTCGTAACCCACACTTGGCCAGACTTCCCCACTTCCTTCAGCAGCTGCACTACGCT K L R N P H L A R L P H F L Q Q L H Y A S F V T H T W P D F P T S F S S C T T L Q A S - P T L G Q T S P L P S A A A L R . . . . . . 74699 GCCACCTACGGACCGTCGCAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTC A T Y G P S Q A R R T V I S S V G G L F P P T D R R K H D G P S - A P - V V S S C H L R T V A S T T D R H K L R R W S L . . . . . : . 74759 TGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTG : GACTTTGTTT C I S S L K I S A F S F G Q I S W : T L F A F L R S K S P H S A L D R F P : G L C L L H F F A Q N L R I Q L W T D F L : D F V . . : . . 75127 GCTGGAAATCTGCC : TATGACACACTACACAATCTTT A G N L P : M T H Y T I F L E I C : L - H T T Q S C W K S A : Y D T L H N L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-10_PPS_1 (74579 74808,75117 75140,75732 75753) (frame '1'; 276 bp, 92 residues) 1 FSELHDKPAG RTVIDMTDRH KLRNPHLARL PHFLQQLHYA ATYGPSQARR TVISSVGGLF 61 CISSLKISAF SFGQISWTLF AGNLPMTHYT IF AGS-11 (74729 74805,74892 74911,75401 75587) SCR (e 0.961 d 0.000 a 0.000,e 0.900 d 0.000 a 0.000,e 0.751) Exon 1 74729 74805 ( 77 n); score: 0.961 Intron 1 74806 74891 ( 86 n); Pd: 0.000 Pa: 0.000 Exon 2 74892 74911 ( 20 n); score: 0.900 Intron 2 74912 75400 ( 489 n); Pd: 0.000 Pa: 0.000 Exon 3 75401 75587 ( 187 n); score: 0.751 PGS (74729 74805,74892 74911,75401 75587) SGN-E336039- 3-phase translation of AGS-11 (+strand): . . . . . . 74729 ACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTC T V I S S V G G L F C I S S L K I S A F P S - A P - V V S S A F L R S K S P H S R H K L R R W S L L H F F A Q N L R I . . : . . : . . 74789 AGCTTTGGACAGATTTC : CGTGAAACCACGGTATATCA : ACAGACCGTAACAAGCTACGTAA S F G Q I S : V K P R Y I : N R P - Q A T - A L D R F : P - N H G I S : T D R N K L R N Q L W T D F : R E T T V Y Q : Q T V T S Y V . . . . . . 75424 CCCCTCACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCACTACGCTGCCACCTAC P L T W S D F P I F L Q Q L H Y A A T Y P S L G Q T S P S S F S S F T T L P P T T P H L V R L P H L P S A A S L R C H L . . . . . . 75484 GGACCGTCACAAGCACGACGGACTGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCT G P S Q A R R T V I S S V G G L F C I S D R H K H D G L S - A P - V V S S A F L R T V T S T T D C H K L R R W S L L H F . . . . . 75544 TCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTACAA S L K I S A F S F G Q I S Y R S K S P H S A L D R F P T F A Q N L R I Q L W T D F L Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-10_AGS-11_PPS_1 (74731 74805,74892 74911,75401 75587) (frame '0'; 282 bp, 94 residues) 1 RHKLRRWSLL HFFAQNLRIQ LWTDFRETTV YQQTVTSYVT PHLVRLPHLP SAASLRCHLR 61 TVTSTTDCHK LRRWSLLHFF AQNLRIQLWT DFLQ AGS-12 (76066 76332) SCR (e 0.875) Exon 1 76066 76332 ( 267 n); score: 0.875 PGS (76066 76332) SGN-E244201+ 3-phase translation of AGS-12 (+strand): . . . . . . 76066 TAAGTTTGCCCTTATTTTCACTGCCTTAAGTTCGCTATACAACCCTTAGGATCACGATAG - V C P Y F H C L K F A I Q P L G S R - K F A L I F T A L S S L Y N P - D H D R S L P L F S L P - V R Y T T L R I T I . . . . . . 76126 GACTTTCTTAGCTAGGAACATAGGCTCAGGCTCAGGTAGGGTGTATTTAGGTATACTTTA D F L S - E H R L R L R - G V F R Y T L T F L A R N I G S G S G R V Y L G I L - G L S - L G T - A Q A Q V G C I - V Y F . . . . . . 76186 GTGACTTTTTGCCCTCCTTGACATATCGACTAAACCTTCCACTTTCTATTATTTGATCTC V T F C P P - H I D - T F H F L L F D L - L F A L L D I S T K P S T F Y Y L I S S D F L P S L T Y R L N L P L S I I - S . . . . . . 76246 GCCCAATTTCTCATATTCTTTCACCTTTTTTTCTCTTCTTTCATCATTTGTGTAAGTGAC A Q F L I F F H L F F S S F I I C V S D P N F S Y S F T F F S L L S S F V - V T R P I S H I L S P F F L F F H H L C K - . . . 76306 TCTCTTCTTTTCTTGCTTGTATTTCTT S L L F L L V F L L F F S C L Y F L S S F L A C I S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-12 (-strand): . . . . . . 76332 AAGAAATACAAGCAAGAAAAGAAGAGAGTCACTTACACAAATGATGAAAGAAGAGAAAAA K K Y K Q E K K R V T Y T N D E R R E K R N T S K K R R E S L T Q M M K E E K K E I Q A R K E E S H L H K - - K K R K . . . . . . 76272 AAGGTGAAAGAATATGAGAAATTGGGCGAGATCAAATAATAGAAAGTGGAAGGTTTAGTC K V K E Y E K L G E I K - - K V E G L V R - K N M R N W A R S N N R K W K V - S K G E R I - E I G R D Q I I E S G R F S . . . . . . 76212 GATATGTCAAGGAGGGCAAAAAGTCACTAAAGTATACCTAAATACACCCTACCTGAGCCT D M S R R A K S H - S I P K Y T L P E P I C Q G G Q K V T K V Y L N T P Y L S L R Y V K E G K K S L K Y T - I H P T - A . . . . . . 76152 GAGCCTATGTTCCTAGCTAAGAAAGTCCTATCGTGATCCTAAGGGTTGTATAGCGAACTT E P M F L A K K V L S - S - G L Y S E L S L C S - L R K S Y R D P K G C I A N L - A Y V P S - E S P I V I L R V V - R T . . . 76092 AAGGCAGTGAAAATAAGGGCAAACTTA K A V K I R A N L R Q - K - G Q T - G S E N K G K L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (- strand): 77924 77023 AGS-1 (77260 77023) SCR (e 0.899) Exon 1 77260 77023 ( 238 n); score: 0.899 PGS (77260 77023) SGN-E243970+ 3-phase translation of AGS-1 (-strand): . . . . . . 77260 AATTGTCGGCGCTTTGCGCCCCAGGTTTGCTTCACCTACCACTCTTGTATTTCAATTTTT N C R R F A P Q V C F T Y H S C I S I F I V G A L R P R F A S P T T L V F Q F F L S A L C A P G L L H L P L L Y F N F . . . . . . 77200 TTATGCATTGAGTACAATTGCATGTTTTTTTGTTGAGGGTGGGGTAAATGGAAAGTGAGT L C I E Y N C M F F C - G W G K W K V S Y A L S T I A C F F V E G G V N G K - V F M H - V Q L H V F L L R V G - M E S E . . . . . . 77140 GTTAGGGTGAAGTCTGAGTAGCCCAATTCACTATCCTCTTTTGGGGTTTTCTTGCCTATG V R V K S E - P N S L S S F G V F L P M L G - S L S S P I H Y P L L G F S C L C C - G E V - V A Q F T I L F W G F L A Y . . . . . . 77080 TTCTTATTCCGCAAAAGACTGATTACTTTTTCTGTTGAACCCGCATGTTTATATCTTT F L F R K R L I T F S V E P A C L Y L S Y S A K D - L L F L L N P H V Y I F V L I P Q K T D Y F F C - T R M F I S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 77023 AAAGATATAAACATGCGGGTTCAACAGAAAAAGTAATCAGTCTTTTGCGGAATAAGAACA K D I N M R V Q Q K K - S V F C G I R T K I - T C G F N R K S N Q S F A E - E H R Y K H A G S T E K V I S L L R N K N . . . . . . 77083 TAGGCAAGAAAACCCCAAAAGAGGATAGTGAATTGGGCTACTCAGACTTCACCCTAACAC - A R K P Q K R I V N W A T Q T S P - H R Q E N P K R G - - I G L L R L H P N T I G K K T P K E D S E L G Y S D F T L T . . . . . . 77143 TCACTTTCCATTTACCCCACCCTCAACAAAAAAACATGCAATTGTACTCAATGCATAAAA S L S I Y P T L N K K T C N C T Q C I K H F P F T P P S T K K H A I V L N A - K L T F H L P H P Q Q K N M Q L Y S M H K . . . . . . 77203 AAATTGAAATACAAGAGTGGTAGGTGAAGCAAACCTGGGGCGCAAAGCGCCGACAATT K L K Y K S G R - S K P G A Q S A D N N - N T R V V G E A N L G R K A P T I K I E I Q E W - V K Q T W G A K R R Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-11_AGS-1_PPS_1 (77025 77225) (frame '0'; 198 bp, 66 residues) 1 RYKHAGSTEK VISLLRNKNI GKKTPKEDSE LGYSDFTLTL TFHLPHPQQK NMQLYSMHKK 61 IEIQEW- AGS-2 (77924 77500) SCR (e 0.798) Exon 1 77924 77500 ( 425 n); score: 0.798 PGS (77924 77500) SGN-E350708+ 3-phase translation of AGS-2 (-strand): . . . . . . 77924 GGGGATTTGGTGCTTGTAGATAGTTCTGGGGTGCCTTGTCTTCTGGGCAAGCTCAAGTCC G D L V L V D S S G V P C L L G K L K S G I W C L - I V L G C L V F W A S S S P G F G A C R - F W G A L S S G Q A Q V . . . . . . 77864 AAATGGACTGGCCTTTACTTGATTACCCAAGTATTCCCTCATGGAGTAGTTGAGTTAAAA K W T G L Y L I T Q V F P H G V V E L K N G L A F T - L P K Y S L M E - L S - K Q M D W P L L D Y P S I P S W S S - V K . . . . . . 77804 GCCAAGGAGGGAGTGTGGTTTAAGAGGAATATAGATAGAATAAAACTTTATTGTGGGCAT A K E G V W F K R N I D R I K L Y C G H P R R E C G L R G I - I E - N F I V G I S Q G G S V V - E E Y R - N K T L L W A . . . . . . 77744 AAAGCATCGGGGAATAAAGTGATAGAGGCATACAATCTTGATGAAGTCTGAGTAATCAAG K A S G N K V I E A Y N L D E V - V I K K H R G I K - - R H T I L M K S E - S R - S I G E - S D R G I Q S - - S L S N Q . . . . . . 77684 GGTCCCCAGTCATGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATATTTA G P Q S C R D I K S G A C W E A T Q Y L V P S H A A T L N Q A L V G R Q P N I Y G S P V M P R H - I R R L L G G N P I F . . . . . . 77624 TAGTCTTTTTAGTAATGGTAGCATTCTCTACTAATGGGTTTTAAATTTGCAGGCACATCA - S F - - W - H S L L M G F K F A G T S S L F S N G S I L Y - W V L N L Q A H H I V F L V M V A F S T N G F - I C R H I . . . . . . 77564 CCAGGAAATTCTGCAGAAGATCACTCTGAAACAGTCATCAACGGACACATGCGATGGACC P G N S A E D H S E T V I N G H M R W T Q E I L Q K I T L K Q S S T D T C D G P T R K F C R R S L - N S H Q R T H A M D . 77504 GTCGT V S R R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-11_AGS-2_PPS_1 (77924 77694) (frame '1'; 228 bp, 76 residues) 1 GDLVLVDSSG VPCLLGKLKS KWTGLYLITQ VFPHGVVELK AKEGVWFKRN IDRIKLYCGH 61 KASGNKVIEA YNLDEV- 3-phase translation of AGS-2 (+strand): . . . . . . 77500 ACGACGGTCCATCGCATGTGTCCGTTGATGACTGTTTCAGAGTGATCTTCTGCAGAATTT T T V H R M C P L M T V S E - S S A E F R R S I A C V R - - L F Q S D L L Q N F D G P S H V S V D D C F R V I F C R I . . . . . . 77560 CCTGGTGATGTGCCTGCAAATTTAAAACCCATTAGTAGAGAATGCTACCATTACTAAAAA P G D V P A N L K P I S R E C Y H Y - K L V M C L Q I - N P L V E N A T I T K K S W - C A C K F K T H - - R M L P L L K . . . . . . 77620 GACTATAAATATTGGGTTGCCTCCCAACAAGCGCCTGATTTAATGTCGCGGCATGACTGG D Y K Y W V A S Q Q A P D L M S R H D W T I N I G L P P N K R L I - C R G M T G R L - I L G C L P T S A - F N V A A - L . . . . . . 77680 GGACCCTTGATTACTCAGACTTCATCAAGATTGTATGCCTCTATCACTTTATTCCCCGAT G P L I T Q T S S R L Y A S I T L F P D D P - L L R L H Q D C M P L S L Y S P M G T L D Y S D F I K I V C L Y H F I P R . . . . . . 77740 GCTTTATGCCCACAATAAAGTTTTATTCTATCTATATTCCTCTTAAACCACACTCCCTCC A L C P Q - S F I L S I F L L N H T P S L Y A H N K V L F Y L Y S S - T T L P P C F M P T I K F Y S I Y I P L K P H S L . . . . . . 77800 TTGGCTTTTAACTCAACTACTCCATGAGGGAATACTTGGGTAATCAAGTAAAGGCCAGTC L A F N S T T P - G N T W V I K - R P V W L L T Q L L H E G I L G - S S K G Q S L G F - L N Y S M R E Y L G N Q V K A S . . . . . . 77860 CATTTGGACTTGAGCTTGCCCAGAAGACAAGGCACCCCAGAACTATCTACAAGCACCAAA H L D L S L P R R Q G T P E L S T S T K I W T - A C P E D K A P Q N Y L Q A P N P F G L E L A Q K T R H P R T I Y K H Q . 77920 TCCCC S P I P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (- strand): 80069 79484 AGS-1 (80069 79484) SCR (e 0.904) Exon 1 80069 79484 ( 586 n); score: 0.904 PGS (80069 79484) SGN-E351864- 3-phase translation of AGS-1 (-strand): . . . . . . 80069 TTTGTGATAACTAGTAGCCTGATGCAAATGCTCACTGCCAGATGTTTGTTTTCAGGGCTA F V I T S S L M Q M L T A R C L F S G L L - - L V A - C K C S L P D V C F Q G Y C D N - - P D A N A H C Q M F V F R A . . . . . . 80009 CCTTCTGAGGATCCACATGCCCATATAGCTAAGGTAAGGGCACTGTGTAAAAGTTGTGTG P S E D P H A H I A K V R A L C K S C V L L R I H M P I - L R - G H C V K V V W T F - G S T C P Y S - G K G T V - K L C . . . . . . 79949 GGGAGGCCTGATTTGGATCTAGATGTAATAGGGCTAAGAGTGTTTCCTCTCTCACTGACG G R P D L D L D V I G L R V F P L S L T G G L I W I - M - - G - E C F L S H - R G E A - F G S R C N R A K S V S S L T D . . . . . . 79889 GGAGAGGCTGCTATATGGTTCACTGAGCTCCCATACAACTCAATCTTCACTTGGAACCAA G E A A I W F T E L P Y N S I F T W N Q E R L L Y G S L S S H T T Q S S L G T N G R G C Y M V H - A P I Q L N L H L E P . . . . . . 79829 TTAAGAGATGTTTTCTTAGCACGCTACTATCCGGTCACCAAGAAACTAAACCACAAAGAC L R D V F L A R Y Y P V T K K L N H K D - E M F S - H A T I R S P R N - T T K T I K R C F L S T L L S G H Q E T K P Q R . . . . . . 79769 AGAGTGAACAACTTTGTGGCACTACCAGGAGAGTCAGTTACTAGTTCTTGGGATAGATTC R V N N F V A L P G E S V T S S W D R F E - T T L W H Y Q E S Q L L V L G I D S Q S E Q L C G T T R R V S Y - F L G - I . . . . . . 79709 ACCTCATACTTGAGAAGTGTTCCAAATCACTGTATAGATGATAAGTCAGTGAAGGAATAC T S Y L R S V P N H C I D D K S V K E Y P H T - E V F Q I T V - M I S Q - R N T H L I L E K C S K S L Y R - - V S E G I . . . . . . 79649 TTATATCGGGGACAAGATGATAACAATAGAGCGGTGTTAAACACTATAGTAGGTGGATCT L Y R G Q D D N N R A V L N T I V G G S Y I G D K M I T I E R C - T L - - V D L L I S G T R - - Q - S G V K H Y S R W I . . . . . . 79589 TATGGGGAGTGTCCTTATGCTGAGATCGCTGAAAAATTAGAGAAAATCTCCCGAAATAAC Y G E C P Y A E I A E K L E K I S R N N M G S V L M L R S L K N - R K S P E I T L W G V S L C - D R - K I R E N L P K - . . . . . 79529 AAAGCTTGGAGTACTAGGAAGTCTGATACAGGGAGAAACACCTTCG K A W S T R K S D T G R N T F K L G V L G S L I Q G E T P S Q S L E Y - E V - Y R E K H L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1-_PGL-12_AGS-1_PPS_1 (80069 79485) (frame '1'; 585 bp, 195 residues) 1 FVITSSLMQM LTARCLFSGL PSEDPHAHIA KVRALCKSCV GRPDLDLDVI GLRVFPLSLT 61 GEAAIWFTEL PYNSIFTWNQ LRDVFLARYY PVTKKLNHKD RVNNFVALPG ESVTSSWDRF 121 TSYLRSVPNH CIDDKSVKEY LYRGQDDNNR AVLNTIVGGS YGECPYAEIA EKLEKISRNN 181 KAWSTRKSDT GRNTF 3-phase translation of AGS-1 (+strand): . . . . . . 79484 CGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTTCGGGAGA R R C F S L Y Q T S - Y S K L C Y F G R E G V S P C I R L P S T P S F V I S G D K V F L P V S D F L V L Q A L L F R E . . . . . . 79544 TTTTCTCTAATTTTTCAGCGATCTCAGCATAAGGACACTCCCCATAAGATCCACCTACTA F S L I F Q R S Q H K D T P H K I H L L F L - F F S D L S I R T L P I R S T Y Y I F S N F S A I S A - G H S P - D P P T . . . . . . 79604 TAGTGTTTAACACCGCTCTATTGTTATCATCTTGTCCCCGATATAAGTATTCCTTCACTG - C L T P L Y C Y H L V P D I S I P S L S V - H R S I V I I L S P I - V F L H - I V F N T A L L L S S C P R Y K Y S F T . . . . . . 79664 ACTTATCATCTATACAGTGATTTGGAACACTTCTCAAGTATGAGGTGAATCTATCCCAAG T Y H L Y S D L E H F S S M R - I Y P K L I I Y T V I W N T S Q V - G E S I P R D L S S I Q - F G T L L K Y E V N L S Q . . . . . . 79724 AACTAGTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTA N - - L T L L V V P Q S C S L C L C G L T S N - L S W - C H K V V H S V F V V - E L V T D S P G S A T K L F T L S L W F . . . . . . 79784 GTTTCTTGGTGACCGGATAGTAGCGTGCTAAGAAAACATCTCTTAATTGGTTCCAAGTGA V S W - P D S S V L R K H L L I G S K - F L G D R I V A C - E N I S - L V P S E S F L V T G - - R A K K T S L N W F Q V . . . . . . 79844 AGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAG R L S C M G A Q - T I - Q P L P S V R E D - V V W E L S E P Y S S L S R Q - E R K I E L Y G S S V N H I A A S P V S E R . . . . . . 79904 GAAACACTCTTAGCCCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTAC E T L L A L L H L D P N Q A S P H N F Y K H S - P Y Y I - I Q I R P P H T T F T G N T L S P I T S R S K S G L P T Q L L . . . . . . 79964 ACAGTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACA T V P L P - L Y G H V D P Q K V A L K T Q C P Y L S Y M G M W I L R R - P - K Q H S A L T L A I W A C G S S E G S P E N . . . . . 80024 AACATCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTATCACAAA N I W Q - A F A S G Y - L S Q T S G S E H L H Q A T S Y H K K H L A V S I C I R L L V I T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-12_AGS-1_PPS_1 (79807 80067) (frame '0'; 261 bp, 87 residues) 1 RAKKTSLNWF QVKIELYGSS VNHIAASPVS ERGNTLSPIT SRSKSGLPTQ LLHSALTLAI 61 WACGSSEGSP ENKHLAVSIC IRLLVIT PGL 13 (+ strand): 80589 83770 AGS-1 (80589 81340,81372 82088,83748 83770) SCR (e 0.857 d 0.448 a 0.000,e 0.788 d 0.000 a 0.321,e 0.739) Exon 1 80589 81340 ( 752 n); score: 0.857 Intron 1 81341 81371 ( 31 n); Pd: 0.448 Pa: 0.000 Exon 2 81372 82088 ( 717 n); score: 0.788 Intron 2 82089 83747 (1659 n); Pd: 0.000 Pa: 0.321 Exon 3 83748 83770 ( 23 n); score: 0.739 PGS (80589 81259) SGN-E241731+ PGS (81110 81340,81372 81730) SGN-E550629+ PGS (81110 81340,81372 81730) SGN-E550645+ PGS (81111 81340,81372 81543) SGN-E273427+ PGS (81356 81983) SGN-E546025+ PGS (81529 81989) SGN-E322644- PGS (81555 82088) SGN-E346859- PGS (81559 81981) SGN-E243137- PGS (81573 82069) SGN-E243969+ PGS (81583 82088) SGN-E540293+ PGS (81583 82088) SGN-E286708+ PGS (81596 81989) SGN-E258752- PGS (81612 82088) SGN-E551207- PGS (81630 81989) SGN-E255290- PGS (81691 81989) SGN-E258181- PGS (81800 82088,83748 83770) SGN-E578039+ PGS (81800 82088) SGN-E577891+ PGS (81800 81983) SGN-E546067- PGS (81801 81983) SGN-E336039- PGS (81824 82045) SGN-E356584+ 3-phase translation of AGS-1 (+strand): . . . . . . 80589 AGTCTTAACTTCAACCTGTTATTACTATTCTTTGGTCAATGACTTCCTTGGAAAGCAAAA S L N F N L L L L F F G Q - L P W K A K V L T S T C Y Y Y S L V N D F L G K Q K S - L Q P V I T I L W S M T S L E S K . . . . . . 80649 ACAATAAATGGGGGTTTCTATTTCTAAATGAGTAAAATTAATTAAAAAACTTGACAGAGA T I N G G F Y F - M S K I N - K T - Q R Q - M G V S I S K - V K L I K K L D R D N N K W G F L F L N E - N - L K N L T E . . . . . . 80709 CAAACAACTTTGAATGTTGGATTTTAATCAATTAATCAAAGTAACTAGGGTTTACATGTT Q T T L N V G F - S I N Q S N - G L H V K Q L - M L D F N Q L I K V T R V Y M F T N N F E C W I L I N - S K - L G F T C . . . . . . 80769 CCCCACAGGTTCATAACTTGACAACTCCAACTATAACAATTCTTTCCTAGTATCTTGCAT P H R F I T - Q L Q L - Q F F P S I L H P T G S - L D N S N Y N N S F L V S C M S P Q V H N L T T P T I T I L S - Y L A . . . . . . 80829 GCAAAGTGATAAGTTATGTATTTCTAAATCCTTGGTCCGGCATCTAGAAAATCTCACTCC A K - - V M Y F - I L G P A S R K S H S Q S D K L C I S K S L V R H L E N L T P C K V I S Y V F L N P W S G I - K I S L . . . . . . 80889 GCACCTTGGTCCGGCTACGTGTGTTGCTATCCTAACCCTTATCCTTACCTCATATTAAGC A P W S G Y V C C Y P N P Y P Y L I L S H L G P A T C V A I L T L I L T S Y - A R T L V R L R V L L S - P L S L P H I K . . . . . . 80949 ATCGTATTCGATATTTGACTAAGTTATTACCTTGTACCAATCAATACTAGCCTATTAGAT I V F D I - L S Y Y L V P I N T S L L D S Y S I F D - V I T L Y Q S I L A Y - I H R I R Y L T K L L P C T N Q Y - P I R . . . . . . 81009 AGTATACACTAAATCTATGTTAATAATTCTTTTCCTATTATCAATCTCCTTGGTCCGGCA S I H - I Y V N N S F P I I N L L G P A V Y T K S M L I I L F L L S I S L V R H - Y T L N L C - - F F S Y Y Q S P W S G . . . . . . 81069 CGTAGCATTCGAGTTCTAACGTTGGCCATCTGTTAAAAGGACTTCTAAGCGAAAGAATTA R S I R V L T L A I C - K D F - A K E L V A F E F - R W P S V K R T S K R K N Y T - H S S S N V G H L L K G L L S E R I . . . . . . 81129 TTAATACATGCAAGACACTATTCTAGAGTTGTTATTTTAGTTAGGGTTTATCTCATTATT L I H A R H Y S R V V I L V R V Y L I I - Y M Q D T I L E L L F - L G F I S L F I N T C K T L F - S C Y F S - G L S H Y . . . . . . 81189 TGCCTATGGTTCGCACAACCCTAGTTATGGAGTTTAGTTACTCATAGACATAAACACAAT C L W F A Q P - L W S L V T H R H K H N A Y G S H N P S Y G V - L L I D I N T I L P M V R T T L V M E F S Y S - T - T Q . . . . . . 81249 ATTCAAATATAGTAGATAAGAATTCATGTAGTTTCTTCAATGAGAAAGAGTAATATCCAA I Q I - - I R I H V V S S M R K S N I Q F K Y S R - E F M - F L Q - E R V I S K Y S N I V D K N S C S F F N E K E - Y P . . . . : . . 81309 AAGTTTGCTTGATTAATCACCAATATTCACTT : CAAAAGTCTAATGATTATCAAGAATCTC K F A - L I T N I H F : K S L M I I K N L S L L D - S P I F T : S K V - - L S R I S K V C L I N H Q Y S L : Q K S N D Y Q E S . . . . . . 81400 ACAATACAATATTTACCAATAAGGAATTTTACAATTTAAGAGTCTAACCTAATAGAGTCC T I Q Y L P I R N F T I - E S N L I E S Q Y N I Y Q - G I L Q F K S L T - - S P H N T I F T N K E F Y N L R V - P N R V . . . . . . 81460 AACCTATCTACCGTCTAACCTCAAAAATGATGTTTTTTGAACTATTTATAAAAAATAAAA N L S T V - P Q K - C F L N Y L - K I K T Y L P S N L K N D V F - T I Y K K - K Q P I Y R L T S K M M F F E L F I K N K . . . . . . 81520 ACCTAATTAAACAACGACTTTGTTTGCTGGAAATCTGCCAAAACGCGGCTAGGTCGGCGG T - L N N D F V C W K S A K T R L G R R P N - T T T L F A G N L P K R G - V G G N L I K Q R L C L L E I C Q N A A R S A . . . . . . 81580 ACATCGCGACGGATCGTCATGGTCACGACGAACCGTCATGGACTCCATCGTCCCATACTT T S R R I V M V T T N R H G L H R P I L H R D G S S W S R R T V M D S I V P Y L D I A T D R H G H D E P S W T P S S H T . . . . . . 81640 GTGCAATTTCTTCTGCTGCTGTTCTTCATTACCCTCGACGACAAGTATGATGGGCCATCA V Q F L L L L F F I T L D D K Y D G P S C N F F C C C S S L P S T T S M M G H H C A I S S A A V L H Y P R R Q V - W A I . . . . . . 81700 TAGGCACAACGGTCCATCGAGGGTCTTCATTTCAAAACACTTCAACTCTTGGAATCTGGG - A Q R S I E G L H F K T L Q L L E S G R H N G P S R V F I S K H F N S W N L G I G T T V H R G S S F Q N T S T L G I W . . . . . . 81760 TACTGGGATTACTTCTCTGATCATCATGATGAACCTACAGGACGGACCGTCACAAGATAC Y W D Y F S D H H D E P T G R T V T R Y T G I T S L I I M M N L Q D G P S Q D T V L G L L L - S S - - T Y R T D R H K I . . . . . . 81820 GTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAACTTCACTACGCTGCCAC V T P H L V R L P H L P S A T S L R C H - P H T W S D F P I F L Q Q L H Y A A T R N P T L G Q T S P S S F S N F T T L P . . . . . . 81880 CTACGGACCATCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCAT L R T I T S T T D R H K L R R W S L L H Y G P S Q A R R T V I S S V G G L F C I P T D H H K H D G P S - A P - V V S S A . . . . . . 81940 TTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAA F F A Q N L R I Q L W T D F L Q N K E K S S L K I S A F S F G Q I S C K T K R N F L R S K S P H S A L D R F P A K Q R E . . . . . . 82000 CTTATATAAAAATTAGCACAAAAAAGGCTTTTGGACACACTAAACTTAAGAAAAAAATAT L I - K L A Q K R L L D T L N L R K K Y L Y K N - H K K G F W T H - T - E K N I T Y I K I S T K K A F G H T K L K K K I . . . : . . . 82060 TAATTATACCATGAAACCACGGTATATCA : CACTACACTCAAATTAGAATCAG - L Y H E T T V Y H : T T L K L E S N Y T M K P R Y I : T L H S N - N Q L I I P - N H G I S : H Y T Q I R I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-13_AGS-1_PPS_1 (81703 82008) (frame '1'; 303 bp, 101 residues) 1 AQRSIEGLHF KTLQLLESGY WDYFSDHHDE PTGRTVTRYV TPHLVRLPHL PSATSLRCHL 61 RTITSTTDRH KLRRWSLLHF FAQNLRIQLW TDFLQNKEKL I- >C08HBa0027D09.1+_PGL-13_AGS-1_PPS_2 (81447 81689) (frame '0'; 240 bp, 80 residues) 1 PNRVQPIYRL TSKMMFFELF IKNKNLIKQR LCLLEICQNA ARSADIATDR HGHDEPSWTP 61 SSHTCAISSA AVLHYPRRQV - AGS-2 (81153 81807) SCR (e 0.747) Exon 1 81153 81807 ( 655 n); score: 0.747 PGS (81153 81807) SGN-E349968- 3-phase translation of AGS-2 (+strand): . . . . . . 81153 AGAGTTGTTATTTTAGTTAGGGTTTATCTCATTATTTGCCTATGGTTCGCACAACCCTAG R V V I L V R V Y L I I C L W F A Q P - E L L F - L G F I S L F A Y G S H N P S S C Y F S - G L S H Y L P M V R T T L . . . . . . 81213 TTATGGAGTTTAGTTACTCATAGACATAAACACAATATTCAAATATAGTAGATAAGAATT L W S L V T H R H K H N I Q I - - I R I Y G V - L L I D I N T I F K Y S R - E F V M E F S Y S - T - T Q Y S N I V D K N . . . . . . 81273 CATGTAGTTTCTTCAATGAGAAAGAGTAATATCCAAAAGTTTGCTTGATTAATCACCAAT H V V S S M R K S N I Q K F A - L I T N M - F L Q - E R V I S K S L L D - S P I S C S F F N E K E - Y P K V C L I N H Q . . . . . . 81333 ATTCACTTGCAAGAATCTCAAAGTAATCAATAATCTCACCAAAAGTCTAATGATTATCAA I H L Q E S Q S N Q - S H Q K S N D Y Q F T C K N L K V I N N L T K S L M I I K Y S L A R I S K - S I I S P K V - - L S . . . . . . 81393 GAATCTCACAATACAATATTTACCAATAAGGAATTTTACAATTTAAGAGTCTAACCTAAT E S H N T I F T N K E F Y N L R V - P N N L T I Q Y L P I R N F T I - E S N L I R I S Q Y N I Y Q - G I L Q F K S L T - . . . . . . 81453 AGAGTCCAACCTATCTACCGTCTAACCTCAAAAATGATGTTTTTTGAACTATTTATAAAA R V Q P I Y R L T S K M M F F E L F I K E S N L S T V - P Q K - C F L N Y L - K - S P T Y L P S N L K N D V F - T I Y K . . . . . . 81513 AATAAAAACCTAATTAAACAACGACTTTGTTTGCTGGAAATCTGCCAAAACGCGGCTAGG N K N L I K Q R L C L L E I C Q N A A R I K T - L N N D F V C W K S A K T R L G K - K P N - T T T L F A G N L P K R G - . . . . . . 81573 TCGGCGGACATCGCGACGGATCGTCATGGTCACGACGAACCGTCATGGACTCCATCGTCC S A D I A T D R H G H D E P S W T P S S R R T S R R I V M V T T N R H G L H R P V G G H R D G S S W S R R T V M D S I V . . . . . . 81633 CATACTTGTGCAATTTCTTCTGCTGCTGTTCTTCATTACCCTCGACGACAAGTATGATGG H T C A I S S A A V L H Y P R R Q V - W I L V Q F L L L L F F I T L D D K Y D G P Y L C N F F C C C S S L P S T T S M M . . . . . . 81693 GCCATCATAGGCACAACGGTCCATCGAGGGTCTTCATTTCAAAACACTTCAACTCTTGGA A I I G T T V H R G S S F Q N T S T L G P S - A Q R S I E G L H F K T L Q L L E G H H R H N G P S R V F I S K H F N S W . . . . . . 81753 ATCTGGGTACTGGGATTACTTCTCTGATCATCATGATGAACCTACAGGACGGACC I W V L G L L L - S S - - T Y R T D S G Y W D Y F S D H H D E P T G R T N L G T G I T S L I I M M N L Q D G Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-13_AGS-2_PPS_1 (81447 81689) (frame '1'; 240 bp, 80 residues) 1 PNRVQPIYRL TSKMMFFELF IKNKNLIKQR LCLLEICQNA ARSADIATDR HGHDEPSWTP 61 SSHTCAISSA AVLHYPRRQV - >C08HBa0027D09.1+_PGL-13_AGS-2_PPS_2 (81572 81805) (frame '0'; 234 bp, 78 residues) 1 VGGHRDGSSW SRRTVMDSIV PYLCNFFCCC SSLPSTTSMM GHHRHNGPSR VFISKHFNSW 61 NLGTGITSLI IMMNLQDG 3-phase translation of AGS-2 (-strand): . . . . . . 81807 GGTCCGTCCTGTAGGTTCATCATGATGATCAGAGAAGTAATCCCAGTACCCAGATTCCAA G P S C R F I M M I R E V I P V P R F Q V R P V G S S - - S E K - S Q Y P D S K S V L - V H H D D Q R S N P S T Q I P . . . . . . 81747 GAGTTGAAGTGTTTTGAAATGAAGACCCTCGATGGACCGTTGTGCCTATGATGGCCCATC E L K C F E M K T L D G P L C L - W P I S - S V L K - R P S M D R C A Y D G P S R V E V F - N E D P R W T V V P M M A H . . . . . . 81687 ATACTTGTCGTCGAGGGTAATGAAGAACAGCAGCAGAAGAAATTGCACAAGTATGGGACG I L V V E G N E E Q Q Q K K L H K Y G T Y L S S R V M K N S S R R N C T S M G R H T C R R G - - R T A A E E I A Q V W D . . . . . . 81627 ATGGAGTCCATGACGGTTCGTCGTGACCATGACGATCCGTCGCGATGTCCGCCGACCTAG M E S M T V R R D H D D P S R C P P T - W S P - R F V V T M T I R R D V R R P S D G V H D G S S - P - R S V A M S A D L . . . . . . 81567 CCGCGTTTTGGCAGATTTCCAGCAAACAAAGTCGTTGTTTAATTAGGTTTTTATTTTTTA P R F G R F P A N K V V V - L G F Y F L R V L A D F Q Q T K S L F N - V F I F Y A A F W Q I S S K Q S R C L I R F L F F . . . . . . 81507 TAAATAGTTCAAAAAACATCATTTTTGAGGTTAGACGGTAGATAGGTTGGACTCTATTAG - I V Q K T S F L R L D G R - V G L Y - K - F K K H H F - G - T V D R L D S I R I N S S K N I I F E V R R - I G W T L L . . . . . . 81447 GTTAGACTCTTAAATTGTAAAATTCCTTATTGGTAAATATTGTATTGTGAGATTCTTGAT V R L L N C K I P Y W - I L Y C E I L D L D S - I V K F L I G K Y C I V R F L I G - T L K L - N S L L V N I V L - D S - . . . . . . 81387 AATCATTAGACTTTTGGTGAGATTATTGATTACTTTGAGATTCTTGCAAGTGAATATTGG N H - T F G E I I D Y F E I L A S E Y W I I R L L V R L L I T L R F L Q V N I G - S L D F W - D Y - L L - D S C K - I L . . . . . . 81327 TGATTAATCAAGCAAACTTTTGGATATTACTCTTTCTCATTGAAGAAACTACATGAATTC - L I K Q T F G Y Y S F S L K K L H E F D - S S K L L D I T L S H - R N Y M N S V I N Q A N F W I L L F L I E E T T - I . . . . . . 81267 TTATCTACTATATTTGAATATTGTGTTTATGTCTATGAGTAACTAAACTCCATAACTAGG L S T I F E Y C V Y V Y E - L N S I T R Y L L Y L N I V F M S M S N - T P - L G L I Y Y I - I L C L C L - V T K L H N - . . . . . . 81207 GTTGTGCGAACCATAGGCAAATAATGAGATAAACCCTAACTAAAATAACAACTCT V V R T I G K - - D K P - L K - Q L L C E P - A N N E I N P N - N N N S G C A N H R Q I M R - T L T K I T T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (81299 81440,81472 81989) SCR (e 0.831 d 0.000 a 0.000,e 0.891) Exon 1 81299 81440 ( 142 n); score: 0.831 Intron 1 81441 81471 ( 31 n); Pd: 0.000 Pa: 0.000 Exon 2 81472 81989 ( 518 n); score: 0.891 PGS (81299 81440,81472 81983) SGN-E369290+ PGS (81307 81440,81472 81989) SGN-E369291- PGS (81330 81440,81472 81989) SGN-E261921- 3-phase translation of AGS-3 (+strand): . . . . . . 81299 TAATATCCAAAAGTTTGCTTGATTAATCACCAATATTCACTTGCAAGAATCTCAAAGTAA - Y P K V C L I N H Q Y S L A R I S K - N I Q K F A - L I T N I H L Q E S Q S N I S K S L L D - S P I F T C K N L K V . . . . . . 81359 TCAATAATCTCACCAAAAGTCTAATGATTATCAAGAATCTCACAATACAATATTTACCAA S I I S P K V - - L S R I S Q Y N I Y Q Q - S H Q K S N D Y Q E S H N T I F T N I N N L T K S L M I I K N L T I Q Y L P . . . : . . . 81419 TAAGGAATTTTACAATTTAAGA : GTCTAACCTCAAAAATGATGTTTTTTGAACTATTTATA - G I L Q F K : S L T S K M M F F E L F I K E F Y N L R : V - P Q K - C F L N Y L - I R N F T I - E : S N L K N D V F - T I Y . . . . . . 81510 AAAAATAAAAACCTAATTAAACAACGACTTTGTTTGCTGGAAATCTGCCAAAACGCGGCT K N K N L I K Q R L C L L E I C Q N A A K I K T - L N N D F V C W K S A K T R L K K - K P N - T T T L F A G N L P K R G . . . . . . 81570 AGGTCGGCGGACATCGCGACGGATCGTCATGGTCACGACGAACCGTCATGGACTCCATCG R S A D I A T D R H G H D E P S W T P S G R R T S R R I V M V T T N R H G L H R - V G G H R D G S S W S R R T V M D S I . . . . . . 81630 TCCCATACTTGTGCAATTTCTTCTGCTGCTGTTCTTCATTACCCTCGACGACAAGTATGA S H T C A I S S A A V L H Y P R R Q V - P I L V Q F L L L L F F I T L D D K Y D V P Y L C N F F C C C S S L P S T T S M . . . . . . 81690 TGGGCCATCATAGGCACAACGGTCCATCGAGGGTCTTCATTTCAAAACACTTCAACTCTT W A I I G T T V H R G S S F Q N T S T L G P S - A Q R S I E G L H F K T L Q L L M G H H R H N G P S R V F I S K H F N S . . . . . . 81750 GGAATCTGGGTACTGGGATTACTTCTCTGATCATCATGATGAACCTACAGGACGGACCGT G I W V L G L L L - S S - - T Y R T D R E S G Y W D Y F S D H H D E P T G R T V W N L G T G I T S L I I M M N L Q D G P . . . . . . 81810 CACAAGATACGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAACTTCACT H K I R N P T L G Q T S P S S F S N F T T R Y V T P H L V R L P H L P S A T S L S Q D T - P H T W S D F P I F L Q Q L H . . . . . . 81870 ACGCTGCCACCTACGGACCATCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTC T L P P T D H H K H D G P S - A P - V V R C H L R T I T S T T D R H K L R R W S Y A A T Y G P S Q A R R T V I S S V G G . . . . . . 81930 TCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAA S S A F L R S K S P H S A L D R F P A K L L H F F A Q N L R I Q L W T D F L Q L F C I S S L K I S A F S F G Q I S C K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-13_AGS-3_PPS_1 (81703 81987) (frame '2'; 285 bp, 95 residues) 1 AQRSIEGLHF KTLQLLESGY WDYFSDHHDE PTGRTVTRYV TPHLVRLPHL PSATSLRCHL 61 RTITSTTDRH KLRRWSLLHF FAQNLRIQLW TDFLQ >C08HBa0027D09.1+_PGL-13_AGS-3_PPS_2 (81422 81440,81472 81689) (frame '1'; 234 bp, 78 residues) 1 GILQFKSLTS KMMFFELFIK NKNLIKQRLC LLEICQNAAR SADIATDRHG HDEPSWTPSS 61 HTCAISSAAV LHYPRRQV- AGS-4 (81299 81408,81448 81983) SCR (e 0.864 d 0.000 a 0.000,e 0.782) Exon 1 81299 81408 ( 110 n); score: 0.864 Intron 1 81409 81447 ( 39 n); Pd: 0.000 Pa: 0.000 Exon 2 81448 81983 ( 536 n); score: 0.782 PGS (81299 81408,81448 81983) SGN-E546519+ 3-phase translation of AGS-4 (+strand): . . . . . . 81299 TAATATCCAAAAGTTTGCTTGATTAATCACCAATATTCACTTGCAAGAATCTCAAAGTAA - Y P K V C L I N H Q Y S L A R I S K - N I Q K F A - L I T N I H L Q E S Q S N I S K S L L D - S P I F T C K N L K V . . . . . : . 81359 TCAATAATCTCACCAAAAGTCTAATGATTATCAAGAATCTCACAATACAA : CTAATAGAGT S I I S P K V - - L S R I S Q Y N : - - S Q - S H Q K S N D Y Q E S H N T : T N R V I N N L T K S L M I I K N L T I Q : L I E . . . . . . 81458 CCAACCTATCTACCGTCTAACCTCAAAAATGATGTTTTTTGAACTATTTATAAAAAATAA P T Y L P S N L K N D V F - T I Y K K - Q P I Y R L T S K M M F F E L F I K N K S N L S T V - P Q K - C F L N Y L - K I . . . . . . 81518 AAACCTAATTAAACAACGACTTTGTTTGCTGGAAATCTGCCAAAACGCGGCTAGGTCGGC K P N - T T T L F A G N L P K R G - V G N L I K Q R L C L L E I C Q N A A R S A K T - L N N D F V C W K S A K T R L G R . . . . . . 81578 GGACATCGCGACGGATCGTCATGGTCACGACGAACCGTCATGGACTCCATCGTCCCATAC G H R D G S S W S R R T V M D S I V P Y D I A T D R H G H D E P S W T P S S H T R T S R R I V M V T T N R H G L H R P I . . . . . . 81638 TTGTGCAATTTCTTCTGCTGCTGTTCTTCATTACCCTCGACGACAAGTATGATGGGCCAT L C N F F C C C S S L P S T T S M M G H C A I S S A A V L H Y P R R Q V - W A I L V Q F L L L L F F I T L D D K Y D G P . . . . . . 81698 CATAGGCACAACGGTCCATCGAGGGTCTTCATTTCAAAACACTTCAACTCTTGGAATCTG H R H N G P S R V F I S K H F N S W N L I G T T V H R G S S F Q N T S T L G I W S - A Q R S I E G L H F K T L Q L L E S . . . . . . 81758 GGTACTGGGATTACTTCTCTGATCATCATGATGAACCTACAGGACGGACCGTCACAAGAT G T G I T S L I I M M N L Q D G P S Q D V L G L L L - S S - - T Y R T D R H K I G Y W D Y F S D H H D E P T G R T V T R . . . . . . 81818 ACGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAACTTCACTACGCTGCC T - P H T W S D F P I F L Q Q L H Y A A R N P T L G Q T S P S S F S N F T T L P Y V T P H L V R L P H L P S A T S L R C . . . . . . 81878 ACCTACGGACCATCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGC T Y G P S Q A R R T V I S S V G G L F C P T D H H K H D G P S - A P - V V S S A H L R T I T S T T D R H K L R R W S L L . . . . . 81938 ATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCT I S S L K I S A F S F G Q I S F L R S K S P H S A L D R F P H F F A Q N L R I Q L W T D F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0027D09.1+_PGL-13_AGS-4_PPS_1 (81366 81408,81448 81689) (frame '2'; 282 bp, 94 residues) 1 SHQKSNDYQE SHNTTNRVQP IYRLTSKMMF FELFIKNKNL IKQRLCLLEI CQNAARSADI 61 ATDRHGHDEP SWTPSSHTCA ISSAAVLHYP RRQV- >C08HBa0027D09.1+_PGL-13_AGS-4_PPS_2 (81703 81981) (frame '0'; 279 bp, 93 residues) 1 AQRSIEGLHF KTLQLLESGY WDYFSDHHDE PTGRTVTRYV TPHLVRLPHL PSATSLRCHL 61 RTITSTTDRH KLRRWSLLHF FAQNLRIQLW TDF ... finished at: Tue Jul 25 11:47:50 2006