GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 11:42:04 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-QPpxV/C08HBa0037O11/C08HBa0037O11.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0037O11.1, from 1 to 124690, both strands analyzed. ... started at: Tue Jul 25 12:09:55 2006 EST library file: /tmp/cxgn-bacpublish-resources-4cUdXj/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 97 EST library file: /tmp/cxgn-bacpublish-resources-4cUdXj/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 6 HitsTableSize = 32 ******************************************************************************** EST sequence 117 +strand 178 n (File: SGN-E308440+) 1 CGCAGTCAAG TTGGACACAA TAGAAAGACA TGTTCAAATT ATCCCGTGCA AAAATAATGA 61 TTTCGTAATG TTACATTTGT TATTGTGTTG TTTTGAATGT TAAAAACACG TTTTGTTTTA 121 TTGAGTGCAG TTGTTATCAT TGACATTTAT AAAGTTTGAT TTCGTACAAA AAAAAAAA Predicted gene structure (within gDNA segment 2597 to 575): Exon 1 1463 1300 ( 164 n); cDNA 5 171 ( 167 n); score: 0.860 MATCH C08HBa0037O11.1- SGN-E308440+ 0.860 164 0.921 C PGS_C08HBa0037O11.1-_SGN-E308440+ (1463 1300) Alignment (genomic DNA sequence = upper lines): GTCAAGTTGG ACACAAATAG AAAGACATGT TCATATTATA ATGTGTAAAA GCAATAATTT 1404 |||||||||| |||| ||||| |||||||||| ||| ||||| ||| |||| ||| |||| GTCAAGTTGG ACAC-AATAG AAAGACATGT TCAAATTATC CCGTGCAAAA ATAATGATTT 63 CGTAATGTTA CATTTGTTAT TGTGTTGTTT TGAAAGATAC A--CA--TTT TGTTTTATTG 1348 |||||||||| |||||||||| |||||||||| |||| | || | || ||| |||||||||| CGTAATGTTA CATTTGTTAT TGTGTTGTTT TGAATGTTAA AAACACGTTT TGTTTTATTG 123 AGTGCAGTTG TTATCATTGA CATTTATAAA GTTTGATTTC GTAAAAAA 1300 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| AGTGCAGTTG TTATCATTGA CATTTATAAA GTTTGATTTC GTACAAAA 171 hqPGS_C08HBa0037O11.1-_SGN-E308440+ (1463 1300) ******************************************************************************** EST sequence 124 +strand 480 n (File: SGN-E302081+) 1 AAACTTAGTA TTGTCCTTCT CCTGCGCATA GTCCAAACTA AATTCTCTTC TTCTTGCCAT 61 CAACATTCGG CCTCTAGACA CCTTTTGACA ACTACCCCAA GCAACATAAT CAAACAATAC 121 CTTAACCCCC ACAACAAAGC TAGAGCAAAA CTTGGACTTC CACCACTCAA ATGGAGCAAT 181 AAATTAGCAA ATTACGCAAG CTGGTGGGGA CACCAACGAC AGGTGAGTTG TGAGTTGGTT 241 CATTCTCGTG GCGACTACTG GGAGAACCTC TTTTGGGGGA GCGGAAAGGA TTGGAAGCCA 301 AGCAATGCTG TGACGATGTG GGCGAAAGAA AGACCTTATT ATGATTATAA GAGCAATTCT 361 TGCAAGAAAA ATGAGCAATG CTTGCATTAT ACACAAATTA TTTGGAAACA AAGCACAAGA 421 GTTGGGTGTG CAAAAGTTCT ATACAAAACA AGAGATACTT TGATTAGTTG CAACTATGAT Predicted gene structure (within gDNA segment 7493 to 4412): Exon 1 6263 6042 ( 222 n); cDNA 1 222 ( 222 n); score: 0.964 Intron 1 6041 5280 ( 762 n); Pd: 1.000 (s: 1.00), Pa: 0.979 (s: 0.98) Exon 2 5279 5022 ( 258 n); cDNA 223 480 ( 258 n); score: 0.984 MATCH C08HBa0037O11.1- SGN-E302081+ 0.975 480 1.000 C PGS_C08HBa0037O11.1-_SGN-E302081+ (6263 6042,5279 5022) Alignment (genomic DNA sequence = upper lines): AAACTTAGTA TTTTCCTTCT CCTTTGCATA GTCCAAACTT CATTCTCTTC TTCTTCCCAT 6204 |||||||||| || ||||||| ||| ||||| ||||||||| ||||||||| ||||| |||| AAACTTAGTA TTGTCCTTCT CCTGCGCATA GTCCAAACTA AATTCTCTTC TTCTTGCCAT 60 CAACATTTGT CCTCTAGACA CCTTTTGACA ACTACCCCAA GCAACATAAT CAAACAATAC 6144 ||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACATTCGG CCTCTAGACA CCTTTTGACA ACTACCCCAA GCAACATAAT CAAACAATAC 120 CTTAACCCCC ACAACAAAGC TAGAGCAAAA CTTGGACTTC CACCACTCAA ATGGAGCAAT 6084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAACCCCC ACAACAAAGC TAGAGCAAAA CTTGGACTTC CACCACTCAA ATGGAGCAAT 180 AAATTAGCAA ATTACGCAAG CTGGTGGGGA CACCAACGAC AGGTGAGTAA AGAATGTGGA 6024 |||||||||| |||||||||| |||||||||| |||||||||| || AAATTAGCAA ATTACGCAAG CTGGTGGGGA CACCAACGAC AG........ .......... 222 TTCAAAATTT AAATTTGATT AGTTCATACT CTAATATAGT AACATTAGTG ACAAGAGGAA 5964 .......... .......... .......... .......... .......... .......... 222 CGAAACGATA TTTCTAAAAT CTTACATGCA TAAAAAAATA TAATAGAATA CTCAAGGCAT 5904 .......... .......... .......... .......... .......... .......... 222 AAAACATAAA TATGACCCTT CACTTGGTTT CAACAGACAA ATATGTGTTT CAACTTTGAA 5844 .......... .......... .......... .......... .......... .......... 222 TTTGCACAAG TAGACATTTA AACTAGTATA AAATTAAACA AGTATACATT ATGTGTTCTA 5784 .......... .......... .......... .......... .......... .......... 222 CGTTGTATAG TACCCGTAGG ACGCCACCTT GGACACAAAA CTGCCTTGTA GGAGGTCATG 5724 .......... .......... .......... .......... .......... .......... 222 TAGGACGAAT GTGTTTATTT GTTCAATTTT ATACAAATTT AAGTGTCTAC TTGTACACAC 5664 .......... .......... .......... .......... .......... .......... 222 CAAAGTTAAA AGTCATAATT TATCATCCGG ATCATGTTTA TGTATTATGC CAGTAGTCAA 5604 .......... .......... .......... .......... .......... .......... 222 TCATGAATAA ATAAATGTAG GCAAATATTA TCTCATTTTG CTATAATGTA AATAAAATAA 5544 .......... .......... .......... .......... .......... .......... 222 AGTCTATGAG TCTATCACAT AGGAAAAAAC TAGCAAATAC ATTAGACATC AGACGTCTAT 5484 .......... .......... .......... .......... .......... .......... 222 CGTTTTTTCA AATTATTAAT ACTGACTTAG AGTGAGAATC TAGTCCATTG TGTTACTTAC 5424 .......... .......... .......... .......... .......... .......... 222 TATATTTACT ATGTTTATTA ACTTCTCTCC TATTACCTTA AAGTTATTGA CTAACTTAAC 5364 .......... .......... .......... .......... .......... .......... 222 ATTTTCTAAA ACTTTTCGTA TATATATATA TATTTGTTTT TTGGTGTAAA AATATTGAAT 5304 .......... .......... .......... .......... .......... .......... 222 TCAGTTGAAC TCATTGCTTT GCAGGTGAGT TGTGAGTTGG TTCATTCTCG TGGCGACTAC 5244 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTGAGT TGTGAGTTGG TTCATTCTCG TGGCGACTAC 258 GGGGAGAACC TCTTTTGGGG GAGCGGAAAG GATTGGAAGC CAAGCGATGC TGTGACGATG 5184 ||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TGGGAGAACC TCTTTTGGGG GAGCGGAAAG GATTGGAAGC CAAGCAATGC TGTGACGATG 318 TGGGCGAAAG AAAGACCTTA TTATGATTAT AAGAGCAATT CTTGCAAGAA AAATGAGCAA 5124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCGAAAG AAAGACCTTA TTATGATTAT AAGAGCAATT CTTGCAAGAA AAATGAGCAA 378 TGCTTGCATT ATACACAAAT TATTTGGAAA CAAAGCACAA GAGTTGGGTG TGCAAAAGTT 5064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTGCATT ATACACAAAT TATTTGGAAA CAAAGCACAA GAGTTGGGTG TGCAAAAGTT 438 CTATGCAAAA CAGGAGATAC TTTGATTAGT TGCAACTATG AT 5022 |||| ||||| || ||||||| |||||||||| |||||||||| || CTATACAAAA CAAGAGATAC TTTGATTAGT TGCAACTATG AT 480 hqPGS_C08HBa0037O11.1-_SGN-E302081+ (6263 6042,5279 5022) ******************************************************************************** EST sequence 129 +strand 703 n (File: SGN-E261055+) 1 TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 61 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 121 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 181 CCCTTGTCGG TAGTAACTGG AGTGTTTGGG ATGAATGTTG GAGGTGTTCC TTGGACCAAC 241 CAAAGAGAAC CTGAGTTGAA GGAAGGGTTC CGCAATGTTA TGATGCTGTG TGTGGTTCTG 301 CTGCTGTTGG TTCTCCTCTG CTTCCTTTTT CCAGCACTTT ATAGTCATTT AATGGCTTGG 361 AAGAGAAGGC GAGACATGAA AAGAAACTGG TCTCTCAACC GGAGATCCTT CCTTAGAAGA 421 AGTACTGGCG TTAGGGAAAG AAATGAAAGG GGAGGTTACT TGAGACTATA CTGAGATGAA 481 AGTGGTAGGC AAATCTAAAA ACTGCAGCTG TTTTCTGCTC CTTCCTTCAT ATCTTTCTCC 541 AACATGAATC AATTTTGGCA TTAGTTCTGG CTTGGTAAGA TTTCTCCTTT TCGCGAGATG 601 CATGCACTTT GAAATGCGAT GGATGTAACA GCAAAGTCTT CCTTTGTTTT ACCAACTCTT 661 GTGCTTGTAT AGAGAATTCT TTTTGATCTT TTAAAAAAAA AAA Predicted gene structure (within gDNA segment 10390 to 8295): Exon 1 9790 9589 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 9588 9496 ( 93 n); Pd: 0.999 (s: 1.00), Pa: 0.931 (s: 1.00) Exon 2 9495 9002 ( 494 n); cDNA 203 696 ( 494 n); score: 0.994 Intron 2 9001 8718 ( 284 n); Pd: 0.900 (s: 0.94), Pa: 0.000 (s: 0) Exon 3 8717 8711 ( 7 n); cDNA 697 703 ( 7 n); score: 1.000 MATCH C08HBa0037O11.1- SGN-E261055+ 0.996 703 1.000 C PGS_C08HBa0037O11.1-_SGN-E261055+ (9790 9589,9495 9002,8717 8711) Alignment (genomic DNA sequence = upper lines): TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 9731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 60 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 9671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 120 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 9611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 180 CCCTTGTCGG TAGTAACTGG AGGTAAGGAA CTTGTTTCAT AAAGTCAAAA ATTATTTTTG 9551 |||||||||| |||||||||| || CCCTTGTCGG TAGTAACTGG AG........ .......... .......... .......... 202 CCATTTCATA GTTTAAAAGC ATCTGACGTC TCTACATTGT CTGCTACTAT TGTAGTGTTT 9491 ||||| .......... .......... .......... .......... .......... .....TGTTT 207 GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 9431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 267 TTCCGCAATG TTATGATGCT GTGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 9371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCAATG TTATGATGCT GTGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 327 TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 9311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 387 TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 9251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 447 AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGCAAATCTA AAAACTGCAG 9191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGCAAATCTA AAAACTGCAG 507 CTGTTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 9131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 567 TGGCTTGGTA AGATTTCTCC TTTTCGCGAG ATGCATGCAC TTTGAAATGC GATGGATGTA 9071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTTGGTA AGATTTCTCC TTTTCGCGAG ATGCATGCAC TTTGAAATGC GATGGATGTA 627 ACAGCAAAGT CTTCCTTTGT TTTACCAACT CTTGTGCTTG TATAGAGAAT TCTTTTTGAT 9011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCAAAGT CTTCCTTTGT TTTACCAACT CTTGTGCTTG TATAGAGAAT TCTTTTTGAT 687 CTTTTACTCA TAACCTTTTG TTCTACTTCA TCCATGAATG TATAAGTTTA TTCATGTACA 8951 |||||| CTTTTAAAA. .......... .......... .......... .......... .......... 696 AATGGAGTCA AAGATCTGGT TGGAGAGCAT TTCTCTGTCA TAAACTAGGA ATAGGGATGA 8891 .......... .......... .......... .......... .......... .......... 696 CAATTGGGCG GGTGATAATC AGGTCAAGAT TCAATCCAAC ACAAATTAGC TTGGGTCAAA 8831 .......... .......... .......... .......... .......... .......... 696 ATGGGTTAGA TAATAGGTTA AGATAAAATC CAACTTAATT TTTATCAAAC TTAAAATTTT 8771 .......... .......... .......... .......... .......... .......... 696 AGTACCTAGT AAGTTTTTTT TCTCTCTTTA TTATGAGTAC ATATCTTATT AAGAAAAAAA 8711 ||||||| .......... .......... .......... .......... .......... ...AAAAAAA 703 hqPGS_C08HBa0037O11.1-_SGN-E261055+ (9790 9589,9495 9002) ******************************************************************************** EST sequence 101 +strand 626 n (File: SGN-E262844+) 1 TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 61 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 121 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 181 CCCTTGTCGG TAGTAACTGG AGTGTTTGGG ATGAATGTTG GAGGTGTTCC TTGGACCAAC 241 CAAAGAGAAC CTGAGTTGAA GGAAGGGTTC CGCAATGTTA TGATGCTGTG TGTGGTTCTG 301 CTGCTGTTGG TTCTCCTCTG CTTCCTTTTT CCAGCACTTT ATAGTCATTT AATGGCTTGG 361 AAGAGAAGGC GAGACATGAA AAGAAACTGG TCTCTCAACC GGAGATCCTT CCTTAGAAGA 421 AGTACTGGCG TTAGGGAAAG AAATGAAAGG GGAGGTTACT TGAGACTATA CTGAGATGAA 481 AGTGGTAGGC AAATCTAAAA ACTGCAGCTG TTTTCTGCTC CTTCCTTCAT ATCTTTCTCC 541 AACATGAATC AATTTTGGCA TTAGTTCTGG CTTGGTAAGA TTTCTCCTTT TCGCGAGATG 601 CATGCACTTT GAAATGCGAT GGATGT Predicted gene structure (within gDNA segment 10390 to 8462): Exon 1 9790 9589 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 9588 9496 ( 93 n); Pd: 0.999 (s: 1.00), Pa: 0.931 (s: 1.00) Exon 2 9495 9072 ( 424 n); cDNA 203 626 ( 424 n); score: 1.000 MATCH C08HBa0037O11.1- SGN-E262844+ 1.000 626 1.000 C PGS_C08HBa0037O11.1-_SGN-E262844+ (9790 9589,9495 9072) Alignment (genomic DNA sequence = upper lines): TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 9731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 60 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 9671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 120 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 9611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 180 CCCTTGTCGG TAGTAACTGG AGGTAAGGAA CTTGTTTCAT AAAGTCAAAA ATTATTTTTG 9551 |||||||||| |||||||||| || CCCTTGTCGG TAGTAACTGG AG........ .......... .......... .......... 202 CCATTTCATA GTTTAAAAGC ATCTGACGTC TCTACATTGT CTGCTACTAT TGTAGTGTTT 9491 ||||| .......... .......... .......... .......... .......... .....TGTTT 207 GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 9431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 267 TTCCGCAATG TTATGATGCT GTGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 9371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCAATG TTATGATGCT GTGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 327 TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 9311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 387 TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 9251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 447 AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGCAAATCTA AAAACTGCAG 9191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGCAAATCTA AAAACTGCAG 507 CTGTTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 9131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 567 TGGCTTGGTA AGATTTCTCC TTTTCGCGAG ATGCATGCAC TTTGAAATGC GATGGATGT 9072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGGCTTGGTA AGATTTCTCC TTTTCGCGAG ATGCATGCAC TTTGAAATGC GATGGATGT 626 hqPGS_C08HBa0037O11.1-_SGN-E262844+ (9790 9589,9495 9072) ******************************************************************************** EST sequence 120 +strand 625 n (File: SGN-E258563+) 1 TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 61 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 121 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 181 CCCTTGTCGG TAGTAACTGG AGTGTTTGGG ATGAATGTTG GAGGTGTTCC TTGGACCAAC 241 CAAAGAGAAC CTGAGTTGAA GGAAGGGTTC CGCAATGTTA TGATGCTGTG TGTGGTTCTG 301 CTGCTGTTGG TTCTCCTCTG CTTCCTTTTT CCAGCACTTT ATAGTCATTT AATGGCTTGG 361 AAGAGAAGGC GAGACATGAA AAGAAACTGG TCTCTCAACC GGAGATCCTT CCTTAGAAGA 421 AGTACTGGCG TTAGGGAAAG AAATGAAAGG GGAGGTTACT TGAGACTATA CTGAGATGAA 481 AGTGGTAGGC AAATCTAAAA ACTGCAGCTG TTTTCTGCTC CTTCCTTCAT ATCTTTCTCC 541 AACATGAATC AATTTTGGCA TTAGTTCTGG CTTGGGAAGA ATTCTCCTTT TCGCGAGATG 601 CATGCACTTT GAAATGCGAT GGATG Predicted gene structure (within gDNA segment 10390 to 8463): Exon 1 9790 9589 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 9588 9496 ( 93 n); Pd: 0.999 (s: 1.00), Pa: 0.931 (s: 1.00) Exon 2 9495 9073 ( 423 n); cDNA 203 625 ( 423 n); score: 0.995 MATCH C08HBa0037O11.1- SGN-E258563+ 0.997 625 1.000 C PGS_C08HBa0037O11.1-_SGN-E258563+ (9790 9589,9495 9073) Alignment (genomic DNA sequence = upper lines): TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 9731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 60 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 9671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 120 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 9611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 180 CCCTTGTCGG TAGTAACTGG AGGTAAGGAA CTTGTTTCAT AAAGTCAAAA ATTATTTTTG 9551 |||||||||| |||||||||| || CCCTTGTCGG TAGTAACTGG AG........ .......... .......... .......... 202 CCATTTCATA GTTTAAAAGC ATCTGACGTC TCTACATTGT CTGCTACTAT TGTAGTGTTT 9491 ||||| .......... .......... .......... .......... .......... .....TGTTT 207 GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 9431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 267 TTCCGCAATG TTATGATGCT GTGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 9371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGCAATG TTATGATGCT GTGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 327 TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 9311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 387 TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 9251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 447 AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGCAAATCTA AAAACTGCAG 9191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGCAAATCTA AAAACTGCAG 507 CTGTTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 9131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 567 TGGCTTGGTA AGATTTCTCC TTTTCGCGAG ATGCATGCAC TTTGAAATGC GATGGATG 9073 |||||||| | ||| |||||| |||||||||| |||||||||| |||||||||| |||||||| TGGCTTGGGA AGAATTCTCC TTTTCGCGAG ATGCATGCAC TTTGAAATGC GATGGATG 625 hqPGS_C08HBa0037O11.1-_SGN-E258563+ (9790 9589,9495 9073) ******************************************************************************** EST sequence 109 +strand 572 n (File: SGN-E254504+) 1 TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AGGACTGAAG 61 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 121 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 181 CCCTTGTCGG TAGTAACTGG AGTGTTTGGG ATGAATGTTG GAGGTGTTCC TTGGACCAAC 241 CAAAGAGAAC CTGAGTTGAA GGAAGGGTTC CGCAATGTTA TGATGCTGGG TGTGGTTCTG 301 CTGCTGTTGG TTCTCCTCTG CTTCCTTTTT CCAGCACTTT ATAGTCATTT AATGGCTTGG 361 AAGAGAAGGC GAGACATGAA AAGAAACTGG TCTCTCAACC GGAGATCCTT CCTTAGAAGA 421 AGTACTGGCG TTAGGGAAAG AAATGAAAGG GGAGGTTACT TGAGACTATA CTGAGATGAA 481 AGTGGTAGGG CAATCTAAAA ACTGCAGCTG NTTTCTGCTC CTTCCTTCAT ATCTTTCTCC 541 AACATGAATC AATTTTGGCA TTAGTTCTGG CT Predicted gene structure (within gDNA segment 10390 to 8516): Exon 1 9790 9589 ( 202 n); cDNA 1 202 ( 202 n); score: 0.995 Intron 1 9588 9496 ( 93 n); Pd: 0.999 (s: 1.00), Pa: 0.931 (s: 1.00) Exon 2 9495 9126 ( 370 n); cDNA 203 572 ( 370 n); score: 0.989 MATCH C08HBa0037O11.1- SGN-E254504+ 0.991 572 1.000 C PGS_C08HBa0037O11.1-_SGN-E254504+ (9790 9589,9495 9126) Alignment (genomic DNA sequence = upper lines): TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 9731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AGGACTGAAG 60 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 9671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 120 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 9611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 180 CCCTTGTCGG TAGTAACTGG AGGTAAGGAA CTTGTTTCAT AAAGTCAAAA ATTATTTTTG 9551 |||||||||| |||||||||| || CCCTTGTCGG TAGTAACTGG AG........ .......... .......... .......... 202 CCATTTCATA GTTTAAAAGC ATCTGACGTC TCTACATTGT CTGCTACTAT TGTAGTGTTT 9491 ||||| .......... .......... .......... .......... .......... .....TGTTT 207 GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 9431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATGAATG TTGGAGGTGT TCCTTGGACC AACCAAAGAG AACCTGAGTT GAAGGAAGGG 267 TTCCGCAATG TTATGATGCT GTGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 9371 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTCCGCAATG TTATGATGCT GGGTGTGGTT CTGCTGCTGT TGGTTCTCCT CTGCTTCCTT 327 TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 9311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAGCAC TTTATAGTCA TTTAATGGCT TGGAAGAGAA GGCGAGACAT GAAAAGAAAC 387 TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 9251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTCTCA ACCGGAGATC CTTCCTTAGA AGAAGTACTG GCGTTAGGGA AAGAAATGAA 447 AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGCAAATCTA AAAACTGCAG 9191 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| |||||||||| AGGGGAGGTT ACTTGAGACT ATACTGAGAT GAAAGTGGTA GGGCAATCTA AAAACTGCAG 507 CTGTTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 9131 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGNTTTCTG CTCCTTCCTT CATATCTTTC TCCAACATGA ATCAATTTTG GCATTAGTTC 567 TGGCT 9126 ||||| TGGCT 572 hqPGS_C08HBa0037O11.1-_SGN-E254504+ (9790 9589,9495 9126) ******************************************************************************** EST sequence 107 +strand 223 n (File: SGN-E263452+) 1 TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 61 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 121 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 181 CCCTTGTCGG TAGTAACTGG AGTGTTTGGG ATGAATGTTG GAG Predicted gene structure (within gDNA segment 10390 to 8769): Exon 1 9790 9589 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 9588 9496 ( 93 n); Pd: 0.999 (s: 1.00), Pa: 0.931 (s: 0) Exon 2 9495 9475 ( 21 n); cDNA 203 223 ( 21 n); score: 1.000 MATCH C08HBa0037O11.1- SGN-E263452+ 1.000 223 1.000 C PGS_C08HBa0037O11.1-_SGN-E263452+ (9790 9589,9495 9475) Alignment (genomic DNA sequence = upper lines): TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 9731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCAGCG ATGACATCAA CTCACTTGAA GAGTTAATTG GTCGGCTGAG AAGACTGAAG 60 GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 9671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGTTG GATTTATCGC CAATCGTGTC ACAGCAATTC AGGCAGGTCT CGACAGTTGG 120 CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 9611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCTGAGC AGATAAATAA AAAACTTTAC TATCTTTCCT TCCTCTCCAT TGTCTTTCTT 180 CCCTTGTCGG TAGTAACTGG AGGTAAGGAA CTTGTTTCAT AAAGTCAAAA ATTATTTTTG 9551 |||||||||| |||||||||| || CCCTTGTCGG TAGTAACTGG AG........ .......... .......... .......... 202 CCATTTCATA GTTTAAAAGC ATCTGACGTC TCTACATTGT CTGCTACTAT TGTAGTGTTT 9491 ||||| .......... .......... .......... .......... .......... .....TGTTT 207 GGGATGAATG TTGGAG 9475 |||||||||| |||||| GGGATGAATG TTGGAG 223 hqPGS_C08HBa0037O11.1-_SGN-E263452+ (9790 9589,9495 9475) ******************************************************************************** EST sequence 34 +strand 746 n (File: SGN-E539636+) 1 GTTCAATGCT CACTTCTCAG CAGATGTTTT CACCAATATT CTTTTTCAGG ATGGTACTCT 61 TGAGGGCGTG GAGCGGGAGG TTGCCTCCTT ATTTCACCTT CCCCACAATT TTCAGCTAAT 121 AATTGATCAC GAGCTTCAAC ATGTGGTACA CCTTTTTATA TATAAATACA TACTTCATAT 181 ATTTAATATA CACACAAACA TCTTTATAAT AACATTTCAT TATAATAATA TTAAGTTCTC 241 TTTGAAATAT TTGGATTAAA AACAGTACTC CCTCCATCTG AAATTATTAG TCATGTTATG 301 CTTATCAAAA GTCAATTTAA CTAGTTTTCA AAGGTAAATT GGATCACTAT AATTCGATAT 361 TTTAAATAAA AATACTAGAT ATTCTAAAAC TATATGAAAA GTACTGTAAA TCATAATTTT 421 TTTTACATAT TAATATGATT AAAAAAATAC ATCTAATATT AATAATTTGA TTCTAAAAAT 481 AGAAATTATA ACGAACAATA ATGGAGGGAG TAATAATAAA GTTAATACAA GAATTTATCC 541 ATATACATGT AACTAAGATA AATAAACAAT CTCTATTAAA TACATGTTTT TTTTTTGTTT 601 TTGGAAAAAG TTTGTTCCGA AATTTTCGGC CAAGTAGTTT GACTAGAAAA GGAGAAAACC 661 GGAACTGTCA CAACTGCATA ACCTGAAATT CAGCCGGACA TCTTTTGGAC TTCTTTTATG 721 TGTACAATTC ATTTATATTG CTATCT Predicted gene structure (within gDNA segment 13595 to 22663): Exon 1 14728 14771 ( 44 n); cDNA 94 134 ( 41 n); score: 0.705 Intron 1 14772 15131 ( 360 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0) Exon 2 15132 15140 ( 9 n); cDNA 135 143 ( 9 n); score: 0.889 Intron 2 15141 16610 (1470 n); Pd: 0.995 (s: 0), Pa: 0.000 (s: 0.68) Exon 3 16611 16657 ( 47 n); cDNA 144 189 ( 46 n); score: 0.681 Intron 3 16658 16702 ( 45 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 4 16703 16716 ( 14 n); cDNA 190 203 ( 14 n); score: 0.571 Intron 4 16717 18356 (1640 n); Pd: 0.970 (s: 0), Pa: 0.000 (s: 0.62) Exon 5 18357 18615 ( 259 n); cDNA 204 459 ( 256 n); score: 0.763 Intron 5 18616 18652 ( 37 n); Pd: 0.000 (s: 0.65), Pa: 0.849 (s: 0.62) Exon 6 18653 18705 ( 53 n); cDNA 460 513 ( 54 n); score: 0.632 Intron 6 18706 19015 ( 310 n); Pd: 0.905 (s: 0.64), Pa: 0.000 (s: 0.64) Exon 7 19016 19087 ( 72 n); cDNA 514 581 ( 68 n); score: 0.653 Intron 7 19088 19422 ( 335 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 8 19423 19443 ( 21 n); cDNA 582 601 ( 20 n); score: 0.857 Intron 8 19444 20536 (1093 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 9 20537 20563 ( 27 n); cDNA 602 628 ( 27 n); score: 0.704 Intron 9 20564 21783 (1220 n); Pd: 0.000 (s: 0), Pa: 0.402 (s: 0) Exon 10 21784 21793 ( 10 n); cDNA 629 638 ( 10 n); score: 0.700 MATCH C08HBa0037O11.1+ SGN-E539636+ 0.724 556 0.745 C PGS_C08HBa0037O11.1+_SGN-E539636+ (14728 14771,15132 15140,16611 16657,16703 16716,18357 18615,18653 18705,19016 19087,19423 19443,20537 20563,21784 21793) Alignment (genomic DNA sequence = upper lines): TCACCTTCCT CAGAATGATT CATCATCAAT AGAAAATCAA GAACATGCTC CCTGATTACA 14787 ||||||||| || ||| || || | | ||| | |||| || | TCACCTTCCC CACAAT-TTT CAGC-T-AAT AATTGATCAC GAGC...... .......... 134 GTCCCACCCC TTTCCTTCAT TTCTCCGCCA ACAGAACTTG GACTTTCCAC AATGGGAACC 14847 .......... .......... .......... .......... .......... .......... 134 TCTGAGAGAA GGGACTGATT TACCGGGGAG AAACCCAATC TCGGAACACG GCCTAATGAC 14907 .......... .......... .......... .......... .......... .......... 134 ACAGTGATCA CTGAATTCTC GGTAACTCTT GCTGCAATTC TAAATGTAAA TTTGCTGGAT 14967 .......... .......... .......... .......... .......... .......... 134 GCAGGGCCAG GTGAATTAAC TCGAAACACA AGAGCCCCAT CTACATGTCC ACAAAAGGGT 15027 .......... .......... .......... .......... .......... .......... 134 CCATTGCTAA CAAGTGACAA AATGTCTTGA AGCTTCATAG GAGGACAGAG TACATCAATA 15087 .......... .......... .......... .......... .......... .......... 134 AGATATTGTG CAGACTCTGA GAGTCTCTGG TTCCACTTTG GAAGCTCAAC ATGGTACCAA 15147 ||||| ||| .......... .......... .......... .......... ....TTCAAC ATG....... 143 CAAAATTCTT TGCCTCTACC CTCTGTTAAA TCCCATTCCT TATTAAAATA ATTCCCTTCT 15207 .......... .......... .......... .......... .......... .......... 143 CCATCAAAGA TATAAGCTTT TTGCCTCACA GCACCAGAAT ATCTGGAGTT ACTGTAACCA 15267 .......... .......... .......... .......... .......... .......... 143 TTGTCTCTAC TATGCACCCG CGAGATCGTT TCTCTATCCA TTTCATCACC TTCTCCTTCT 15327 .......... .......... .......... .......... .......... .......... 143 ATAATTGGAT CTTTGTGACT AAGATCCATT ACTCCTTACC CAACTTGTTT AATCTAGCTA 15387 .......... .......... .......... .......... .......... .......... 143 ATAATGACAC AACTCTCTAT AACCAAAACA ATATTCAACG TGGATACCGA CTTACACTCC 15447 .......... .......... .......... .......... .......... .......... 143 CTGAAATTTC CGACTTTATA TACATTTTTC CCAGAAACAA TTCCAAAACA AAGAACTAAA 15507 .......... .......... .......... .......... .......... .......... 143 CCAACAATAA TGACCCAAAT GAAGATAGGC AGAAATGTAG ATAACTCATG AAAACAGCAC 15567 .......... .......... .......... .......... .......... .......... 143 TATCAGGTTT TCCCCAAAGA AGGAAAAATC AGGCAAACCA CATTAAGAAT CCATGCAAAT 15627 .......... .......... .......... .......... .......... .......... 143 TTAGAATTCA ATCTCATCAC AGGCTCACCC CAATATATCA TTATCCCATT GCATCAATAA 15687 .......... .......... .......... .......... .......... .......... 143 TCTGAGAATA AATTACATAC ACCCTCAAAA GTCAAAAGCT TCACCTTGTT AAAGATATCC 15747 .......... .......... .......... .......... .......... .......... 143 TCAATAAAAG ACACACAACA CAATCAAACA CAACTATTCT TCAAATCCAA GCTAATTGGG 15807 .......... .......... .......... .......... .......... .......... 143 GTCACCCAAA AACACATCTG TTTGAAAAAT GAAGAGTATA GGCCCAAACA AATTAATTTC 15867 .......... .......... .......... .......... .......... .......... 143 TGCTCGATTC TTGGAAAAAA CAATCAAGAA TTGACAAAAA AGATTAGCGG AGAAAATAAG 15927 .......... .......... .......... .......... .......... .......... 143 AAAGAATCAA TTGGTCAGAT AAAGGCAATG ACTTTTCAAA ATATTGGGAA GTTTCTTCGA 15987 .......... .......... .......... .......... .......... .......... 143 AAGTTCTTGT TGCACCTGCG ATTGTCAGTT GAATTTTTTA ACATTTTCTT GATTATTTTT 16047 .......... .......... .......... .......... .......... .......... 143 AAGATAAGAG TTGTCCAGTA ATGGTATGTC CACCAACCCA AAATATAAAA TTTGTAAAAC 16107 .......... .......... .......... .......... .......... .......... 143 AGAGAAGAAA ATACCGCATT TGTAGCCTGT GTTCCATAGA ATGCGGTTGC TGAATTTTCT 16167 .......... .......... .......... .......... .......... .......... 143 GCTTCCTCTT GTAATGCTGA AAAGGAAGTT ACAGCGGATT TATTGAATAG GATGGATGTG 16227 .......... .......... .......... .......... .......... .......... 143 GTGGCACACA TAGGTTAGGT TGTTGAGGTT TTTCGTTTCG ATTCGAGTTT TAGATATAAA 16287 .......... .......... .......... .......... .......... .......... 143 AACTTTTTGT TAAAGAGCGA TAAAATTATT ATTTTTTCAT TCGATTCGAG TGCTGGTTGT 16347 .......... .......... .......... .......... .......... .......... 143 AAAAGAATTC TTAATAGAAA AGATTTTCTC AAATGAAATC TCAAGTATAT GTCAAATTTT 16407 .......... .......... .......... .......... .......... .......... 143 AATGTGACTA TTAAACACCT AACGAAAATC AAAAAGTAGT AGAGAATTAA AAAATTAATG 16467 .......... .......... .......... .......... .......... .......... 143 CAACTCATAA ATTATCTATC CTTATTATTT TCAAGATTAT TATGGATAAA TAGAATAATA 16527 .......... .......... .......... .......... .......... .......... 143 TTTACAAAAT TATAATTGAT AGGGAACTAG CATCTGAAAT TGGTAGGTAA CTAATATCTA 16587 .......... .......... .......... .......... .......... .......... 143 CTTTCTCTCA TGATGATCAA GGATATTATA TATTTTTATA TTTATATATA AATTTAAAAA 16647 | || | |||||||| | || ||| | | || | | .......... .......... ...TGGTACA CCTTTTTATA TATAAATACA TACTTCATA- 179 TAATTAATAA ATTTAATTAA GAATTTTAAG CTTATTGTTT TCTTTCGTTA TCTACACATA 16707 || |||||| ||| | TATTTAATAT .......... .......... .......... .......... .....ACACA 194 TTAAAATTGG CAAGTTCATA AAAACTGCAT AAACTAGACT TTACAAGATT GAATATTTAA 16767 || || CAAACATCT. .......... .......... .......... .......... .......... 203 TCGTTTATTT TTATCCAGTT ATTAATAACT TTATTATTTT AGATAATAAT TGATAGAATG 16827 .......... .......... .......... .......... .......... .......... 203 AAGTATGAAC GCTTATAACA AATCCTATTA ATATAAAGAA ATATCGACCT ACTTTTATCA 16887 .......... .......... .......... .......... .......... .......... 203 TTCACATAAA GATAATCAGA GTTTTTACGA AAAAAATTTA TTAATGAAAA AAGATATTTA 16947 .......... .......... .......... .......... .......... .......... 203 ACGGATAAAA AATATTAAAC TAAGTGCTTG TAACTCTTTT ATAAAAGTCT CAATCAATTA 17007 .......... .......... .......... .......... .......... .......... 203 ATTATTTTGA AGATTTTTTA TAATTATTTA TGTGATATTA TTTAATTAGA CATTAATTTT 17067 .......... .......... .......... .......... .......... .......... 203 TTTTAAAAAG AATCTACGAT TTGAAACAAA TCTAAAACAA AACAATTTGA CAATAATTAA 17127 .......... .......... .......... .......... .......... .......... 203 TGACAAAATA ATATCTAATC ACTGGCCTCT ATTTCTTGGC ATGTTTTTTG TGCAATTTGA 17187 .......... .......... .......... .......... .......... .......... 203 TGGGACCTAA AAAGCATCTA GGTTTTAGAT TTTTTACTTT TGCGTGTACA TGAATGACAA 17247 .......... .......... .......... .......... .......... .......... 203 AGTACTGTTA TTTTATGGGA AAAAAATAAT TTAACTAGAT TCTGATTCTT AAGTGTTTTT 17307 .......... .......... .......... .......... .......... .......... 203 GGTGTAATAT TTAATAAAAA AGTTTTATGT ATATATTTAG CGTTTGTTTG AATTGATTTA 17367 .......... .......... .......... .......... .......... .......... 203 AAAATTATTT TTAATTTAAA AATAAAAAGT AGAGGAAATT TATATTTTTG GTTTTAAATT 17427 .......... .......... .......... .......... .......... .......... 203 TATTTTTAAG TCATTTAAAA TTTGTATCAA AGGGACAAAA ATGGCTCAGG AAGAAAATCA 17487 .......... .......... .......... .......... .......... .......... 203 ATCAAAGTTT TGTTTTAAGC CTTTAAATTA TTTCATTGTA ACAAATAAGT AGTAAAAAAT 17547 .......... .......... .......... .......... .......... .......... 203 AAAACTATTA TTATGAACTA ATACGAATAA AAATTCAAGC ACGAATAACA AAAAAATACT 17607 .......... .......... .......... .......... .......... .......... 203 AATATGATGT AATGATTGGA GATGCCAAAT AGCAATTTCA TGAACAAGAA CGAAAAAAAT 17667 .......... .......... .......... .......... .......... .......... 203 TGAACAAAAT AAGATATATA CAAATATAAA GATTTAAGGA GTCAACGCTA TTTTTATGCA 17727 .......... .......... .......... .......... .......... .......... 203 ACTATAATTC TAATTGATAA AGGAGATTTT GAGTTTTATA CTAATTCTAA AAATATTAAT 17787 .......... .......... .......... .......... .......... .......... 203 AAAAAAAGAC TATTAGATTT TGAATATATT AAACTTAAAC TATAATTCTA ATTAATAGAA 17847 .......... .......... .......... .......... .......... .......... 203 GAGATTTTGA ATTTTATATT AATTATAAAA AAAATTGTTA AATTTTAAAT GAGAGTATGT 17907 .......... .......... .......... .......... .......... .......... 203 ATATTTTTAA TGAAGGGATC TATTGCTTTG AATTCAAAAC AAACACTAAA TAATTTGAAA 17967 .......... .......... .......... .......... .......... .......... 203 ATAATAATAA TCAAAACATG AATTTTGAAA AAAAACATTC CTTCCCTGGG AATGGAGAAC 18027 .......... .......... .......... .......... .......... .......... 203 CCATGACATT GGGCACGGAA TATGTGGCAG CTGCTATTTG CGCTAGGCGA TTTCTTTTAC 18087 .......... .......... .......... .......... .......... .......... 203 AAGGGATGTC CTTTCAATTA TTTTATCCGT TATATATATG TGTATATATA TATATATTGA 18147 .......... .......... .......... .......... .......... .......... 203 TATAATTGAT AAAAAAATTT GATTAAGTCG TAAAGTTTTA CGTGACACAC TTTGGGTATG 18207 .......... .......... .......... .......... .......... .......... 203 CCTAGATCTG CCCCACAGCC CAAGTGATCC AACTATTAAG ATTTCACACT CTGTATATGT 18267 .......... .......... .......... .......... .......... .......... 203 CTAAAATGTC TGATATAATT ATTATTCTTT CCGTCTCATT TTACATGAGG TAACTTGATT 18327 .......... .......... .......... .......... .......... .......... 203 TCGCATAAGT TTTAAAAAGA AAGGAAGACT TCTAAAATTC ATGTTCTAAA ATGAATGATA 18387 | | ||| | | || ||| | || ||| ||| .......... .......... .........T TATAATA-AC AT-TTC-ATT AT-AATAATA 230 TAAATTTATG TGTTTATTCA TTCAAAGAAT ATAAATACTC CCTCCGTCCG AAATTGTTTG 18447 | || || | | | | | || | || | | ||||| ||||| || | ||||| || | TTAAGTTCTC TTTGAAATAT TTGGATTAAA AACAGTACTC CCTCCATCTG AAATTATTAG 290 TCATGTTGTG CTTATAGAAA GTCAATTTAA CTAATTTTCA AAGGTAAATT AGATCACATT 18507 ||||||| || ||||| ||| |||||||||| ||| |||||| |||||||||| |||||| | TCATGTTATG CTTATCAAAA GTCAATTTAA CTAGTTTTCA AAGGTAAATT GGATCACTAT 350 AATTCGATAT TTTAAACAAA AAAATTAGAT ATTCTAAAAC TATATGGAAA ATACTATAAA 18567 |||||||||| |||||| ||| || | ||||| |||||||||| |||||| ||| |||| |||| AATTCGATAT TTTAAATAAA AATACTAGAT ATTCTAAAAC TATATGAAAA GTACTGTAAA 410 T--T-ACATT TTTTGCATAT TAATATGATG AAAATAATTC TATCTTAAAA TGTTAGTCAA 18624 | | | || |||| ||||| ||||||||| |||| ||| | ||| ||| | | TCATAATTTT TTTTACATAT TAATATGATT AAAAAAATAC -ATC-TAATA T......... 459 AGTTTTTATA GTTTGACTTT AAAAATAGAA ACCATGACAA AC-AAAAATA GAAACTATGA 18683 | | || | | ||||||| |||| ||| | .......... .......... ........TA ATAATTTGAT TCTAAAAATA GAAATTATAA 491 CAAACAAAAC CGGACAGAGA AAGTATTCTA AAACTGAATT ATTACTTAAA TATAGAAATA 18743 | ||||| | ||| ||| || CGAACAATAA TGGAGGGAGT AA........ .......... .......... .......... 513 TGTCATCTTT TAAAACCGAT TAAAAAAAAG TAAATCAGAA TAATATATAT TTTTTAATAT 18803 .......... .......... .......... .......... .......... .......... 513 ATATATATAT GAGTAACATA TAATGTCAAA TTACTAAATA ATGAAAAATA TTGATCAAAC 18863 .......... .......... .......... .......... .......... .......... 513 AAAAACATCC TATAGTAATT GCAACATATA ATGAATACAA AGAGGAGAAA CGAGTAAAAA 18923 .......... .......... .......... .......... .......... .......... 513 TCTCAAAAGA TCATTTAATT TTGACAATTT ATCTGCAAAA TTATTGAGAT ATATTTTATA 18983 .......... .......... .......... .......... .......... .......... 513 TAAATTAAAT CATTCAATTT AAATTTTTAT ATCAATAAAA TCATTCAACT AAATTTATCA 19043 |||||| | | | | |||||||| .......... .......... .......... ..TAATAAAG TTAAT-ACAA GAATTTATC- 539 CTATAAAACT TAAAATTAAC ATGAAAAAAT AAATTCTTTT TAATATCACA ATAATAATAA 19103 | || | || | || ||| || || ||| || ||| || ||| C-AT-ATACA TGTAACTAAG ATAAATAAAC AATCTCTATT AAAT...... .......... 581 TTAAAATAAT GAATTCGGAA ACTAGTAGGA TATTTATTTT ATTTCTTGTA TTAATTAACA 19163 .......... .......... .......... .......... .......... .......... 581 TTCCCAAAAG TATACAGACA AGAGTTTGAC ACATTCAATA GACTGATTTG GAGAAACAAA 19223 .......... .......... .......... .......... .......... .......... 581 ATAATTTGGA TACACTCCAT CTTTTATATC AATGTTATTT GTCTTGAGTA TTTTTTTTTA 19283 .......... .......... .......... .......... .......... .......... 581 TAAAAAAATC TATAGGAAAA TATTTTCATT AAGTAGGCGT TTAGAGAGAT TTTTTTTGTT 19343 .......... .......... .......... .......... .......... .......... 581 AAAAAAAAAA AAAGTATTTG AAGTCATACT AGAAACAATA ATACGAAAGT TAAAATTGTA 19403 .......... .......... .......... .......... .......... .......... 581 TTTTAATATC TCAAAATTGA CATTTATTTT TTATTGTTTT ATTTTATAAT GACATAGTAA 19463 | ||| | |||| || ||||||| .......... .........A CATGT-TTTT TTTTTGTTTT .......... .......... 601 TTTTGAAAAA AATTATTTTA TTATTTAAAT TATAAACATG ATATAAAATT TAATTTATTT 19523 .......... .......... .......... .......... .......... .......... 601 TGTTATGCCA AATTTTTTTT AAAAAGTGAT AAATTTAATT GAGTGATTTT ATTGATATAA 19583 .......... .......... .......... .......... .......... .......... 601 AATTTTAAGT TGAGTGTTTT TATTGATACA GATAAAAGTT CAATAGTTTT GCTAGACAAA 19643 .......... .......... .......... .......... .......... .......... 601 TTTTAAAGTT CAGTGCCTTT TGAAATATTT ACTTAGTTAT AAACATCATA AACACACTTA 19703 .......... .......... .......... .......... .......... .......... 601 AACTTTACAC GATTATTAAT TTTATTTTTA AATCTTAAAA ATCTTTGTTT ATTTAATTAA 19763 .......... .......... .......... .......... .......... .......... 601 TTAAACTTAA ATTACTCCCG GTCTTCTAAC ATTAATAAGA TATACTTTAA AATTCTCGAC 19823 .......... .......... .......... .......... .......... .......... 601 AAATTTAAAA GTGTTTTCAA TACTTTTCTT GATTTTTTTA TTAAGAGCTC GTTTGGCCAT 19883 .......... .......... .......... .......... .......... .......... 601 AGTTTTTTCA AATAATATTT AGGGGAAAAT TTGGCAAATA ATATATGTTC ATACAATTTG 19943 .......... .......... .......... .......... .......... .......... 601 TTATCATTTG ACAAATTTTC AAATAATATT TTTTTCTAGT ATTTTGGCTA AATCTCATTA 20003 .......... .......... .......... .......... .......... .......... 601 TTTGAGATCT TTTGAAAATT GATTTTTTAC ACCAAACTTT AATCTTTTAC GAAAACACCA 20063 .......... .......... .......... .......... .......... .......... 601 TCTATAGTAG TTGTTTGCGT TATATTACAT AATCTTTTTA CGTGAACATC AAAGTAGTGA 20123 .......... .......... .......... .......... .......... .......... 601 TGAAATATTC TCTGAATATG AAAGTGATGA TATAATTGTT GAATAAAATG ATAAATAGTT 20183 .......... .......... .......... .......... .......... .......... 601 AGCTCATGTG CTTTGTCTAC TTCATAATGT ATGGAATGAT GCTTGTTGCA CCACTTCAAA 20243 .......... .......... .......... .......... .......... .......... 601 CTACCACATT GCCTTAGTGT CATGAGTACT TCTTGCTATT TATTGTAATG AAGATCCAAT 20303 .......... .......... .......... .......... .......... .......... 601 TGATTTGTAA TACGAATTTA TGGTAAATTT TGATAGTTTA AAAAAACTAT GGATAAATCA 20363 .......... .......... .......... .......... .......... .......... 601 TTTTTTTTTA AAAAAATGAA ATATATTTCT TAAATAGATC AAACACATGT CTAGTTAAAT 20423 .......... .......... .......... .......... .......... .......... 601 TTTACCCAGA TAATATTTGT AATATTTTAA AAATATATGA CGAAATACCG ATAAAGCTAC 20483 .......... .......... .......... .......... .......... .......... 601 TCATAATGTG TCACATGACA TATCAAATAT ATATCTAAAA TTAATTAGTC GAGTAGATAA 20543 | || || .......... .......... .......... .......... .......... ...TGGAAAA 608 CATTTGTTAC GAAACATTAG AAAAGGAATA AGAAAGAAAA AGTAATGGAT ATGTAGATGA 20603 |||||| | |||| || | AGTTTGTTCC GAAATTTTCG .......... .......... .......... .......... 628 TATAAAATAT TGGGAATCCT CACTTTACCC GCCAATTGTC CTTCTCTCTT CCACATTATC 20663 .......... .......... .......... .......... .......... .......... 628 CATTAACCCC CAATTCCTTC ACTCTTCAAC CTCCAATTGC TGCCGCCGAT CAAATGTGGA 20723 .......... .......... .......... .......... .......... .......... 628 GCTATGGTTA ATCTGCCAAT GGACCAAATG CATCACTTTC AAGCCTTACC TGCTCATATT 20783 .......... .......... .......... .......... .......... .......... 628 CATGGAGATA TGTCAGTGCT TCTGTTTCCT TTTAGAAAAT GCTGGCAGCA ACAGAAACAA 20843 .......... .......... .......... .......... .......... .......... 628 AACCATTTTC AGAGACCGGC ATTGTCTTCT TCTTCCTCGC CGGTCTCCGG CTGTCAGCCC 20903 .......... .......... .......... .......... .......... .......... 628 AGAAGGTATT ATTTGGGCAG ATTCAAAAGA CGCTTCCGTT CTGAACCTAA TCTAAAACCA 20963 .......... .......... .......... .......... .......... .......... 628 CTAACTTCCC GCATTGTTGA TCTTACTCGC AGAAGGCAAC TCCACCAGGT CTCTCTCAGG 21023 .......... .......... .......... .......... .......... .......... 628 GTTATTTTCC CTCAAGTTCT GTTCCTACTG CTAAATTAGA ATTTTTTTTT AATCGAGACT 21083 .......... .......... .......... .......... .......... .......... 628 GCTTAGTAAT GTATTATTAG TTTCAAAACA AGGAACATAA ATTAACTGAA AATGTCTAGG 21143 .......... .......... .......... .......... .......... .......... 628 CATACTACAT CATTGATTTA AATTATTGAA CTGAAACATA ACACATGAGT TATGGTCAAA 21203 .......... .......... .......... .......... .......... .......... 628 ACATTTGCTT CTTTCGAAGA GTGGATATAC GGCTAGTCCA AGTACTAAGA AGAAATGCTT 21263 .......... .......... .......... .......... .......... .......... 628 TCACAGTACA AGCACTTCTT AATGCTAGAA TTGGTAAGAC TTATCATTGT TATGTTGCAG 21323 .......... .......... .......... .......... .......... .......... 628 TTCTACCCTG TTGTAGAAAC TTTGACAAGC AGCCTACAAC ACGATAACAT CAGCTACTGT 21383 .......... .......... .......... .......... .......... .......... 628 TGTTTTCTTC TCTTGTGGTT ATGCCTATTT TTGTATTACA TACTATCTTC TACTACTCCA 21443 .......... .......... .......... .......... .......... .......... 628 AACATTCCTC AAGGTGGCAG ATTGTTGTGT GACACTCAGC TGATAATTTG GACAGTTATG 21503 .......... .......... .......... .......... .......... .......... 628 TTTGAGATGT CCCAAGGCAT TTGAAAGATT TACTGGATAG ATGTCCATTA CATAAAACAT 21563 .......... .......... .......... .......... .......... .......... 628 GCATGAAGAT CTATCAAAAG TTAAAACTTT TTCCCATAAT CAACTTAGAA GGTTTAGAAC 21623 .......... .......... .......... .......... .......... .......... 628 CTGCGTTACA CTAAGGAGTT CTAACCTGTC TTTTAAAATG TTGGCGGTCT TAGCATCTTT 21683 .......... .......... .......... .......... .......... .......... 628 ACCTCAACTT TTTACTCAGA CTTAAATCTA CCTGAACCAT AATCTTGGGT TTAAATTATT 21743 .......... .......... .......... .......... .......... .......... 628 ATATTTTTGT AGCTTGAATG TTTGAATTTC TTTTATGAAG CATAAGTAGT 21793 ||||||| .......... .......... .......... .......... GCCAAGTAGT 638 hqPGS_C08HBa0037O11.1+_SGN-E539636+ (14728 14771,15132 15140,16611 16657,16703 16716,18357 18615,18653 18705,19016 19087,19423 19443,20537 20563) ******************************************************************************** EST sequence 28 +strand 593 n (File: SGN-E285125+) 1 TTCAATGCTC ACTTCTCAGC AGATGTTTTC ACCAATATTC TTTTTCAGGA TGGTACTCTT 61 GAGGGCGTGG AGCGGGAGGT TGCCTCCTTA TTTCACCTTC CCCACAATTT TCAGCTAATA 121 ATTGATCACG AGCTTCAACA TGTGGTACAC CTTTTTATAT ATAAATACAT ACTTCATATA 181 TTTAATATAC ACACAAACAT CTTTATAATA ACATTTCATT ATAATAATAT TAAGTTCTCT 241 TTGAAATATT TGGATTAAAA ACAGTACTCC CTCCATCTGA AATTATTAGT CATGTTATGC 301 TTATCAAAAG TCAATTTAAC TAGTTTTCAA AGGTAAATTG GATCACTATA ATTCGATATT 361 TTAAATAAAA ATACTAGATA TTCTAAAACT ATATGAAAAG TACTGTAAAT CATAATTTTT 421 TTTACATATT AATATGATTA AAAAAATACA TCTAATATTA ATAATTTGAT TCTAAAAATA 481 GAAATTATAA CGAACAATAA TGGAGGGAGT AATAATAAAG TTAATACAAG AATTTATCCA 541 TATACATGTA ACTAAAATAA ATAAACAATC TCTATTAAAT ACATGTGTTT TTT Predicted gene structure (within gDNA segment 13605 to 21143): Exon 1 14728 14771 ( 44 n); cDNA 93 133 ( 41 n); score: 0.705 Intron 1 14772 15131 ( 360 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0) Exon 2 15132 15140 ( 9 n); cDNA 134 142 ( 9 n); score: 0.889 Intron 2 15141 16610 (1470 n); Pd: 0.995 (s: 0), Pa: 0.000 (s: 0.68) Exon 3 16611 16657 ( 47 n); cDNA 143 188 ( 46 n); score: 0.681 Intron 3 16658 16702 ( 45 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 4 16703 16716 ( 14 n); cDNA 189 202 ( 14 n); score: 0.571 Intron 4 16717 18356 (1640 n); Pd: 0.970 (s: 0), Pa: 0.000 (s: 0.62) Exon 5 18357 18615 ( 259 n); cDNA 203 458 ( 256 n); score: 0.763 Intron 5 18616 18652 ( 37 n); Pd: 0.000 (s: 0.65), Pa: 0.849 (s: 0.62) Exon 6 18653 18705 ( 53 n); cDNA 459 512 ( 54 n); score: 0.632 MATCH C08HBa0037O11.1+ SGN-E285125+ 0.740 426 0.718 C PGS_C08HBa0037O11.1+_SGN-E285125+ (14728 14771,15132 15140,16611 16657,16703 16716,18357 18615,18653 18705) Alignment (genomic DNA sequence = upper lines): TCACCTTCCT CAGAATGATT CATCATCAAT AGAAAATCAA GAACATGCTC CCTGATTACA 14787 ||||||||| || ||| || || | | ||| | |||| || | TCACCTTCCC CACAAT-TTT CAGC-T-AAT AATTGATCAC GAGC...... .......... 133 GTCCCACCCC TTTCCTTCAT TTCTCCGCCA ACAGAACTTG GACTTTCCAC AATGGGAACC 14847 .......... .......... .......... .......... .......... .......... 133 TCTGAGAGAA GGGACTGATT TACCGGGGAG AAACCCAATC TCGGAACACG GCCTAATGAC 14907 .......... .......... .......... .......... .......... .......... 133 ACAGTGATCA CTGAATTCTC GGTAACTCTT GCTGCAATTC TAAATGTAAA TTTGCTGGAT 14967 .......... .......... .......... .......... .......... .......... 133 GCAGGGCCAG GTGAATTAAC TCGAAACACA AGAGCCCCAT CTACATGTCC ACAAAAGGGT 15027 .......... .......... .......... .......... .......... .......... 133 CCATTGCTAA CAAGTGACAA AATGTCTTGA AGCTTCATAG GAGGACAGAG TACATCAATA 15087 .......... .......... .......... .......... .......... .......... 133 AGATATTGTG CAGACTCTGA GAGTCTCTGG TTCCACTTTG GAAGCTCAAC ATGGTACCAA 15147 ||||| ||| .......... .......... .......... .......... ....TTCAAC ATG....... 142 CAAAATTCTT TGCCTCTACC CTCTGTTAAA TCCCATTCCT TATTAAAATA ATTCCCTTCT 15207 .......... .......... .......... .......... .......... .......... 142 CCATCAAAGA TATAAGCTTT TTGCCTCACA GCACCAGAAT ATCTGGAGTT ACTGTAACCA 15267 .......... .......... .......... .......... .......... .......... 142 TTGTCTCTAC TATGCACCCG CGAGATCGTT TCTCTATCCA TTTCATCACC TTCTCCTTCT 15327 .......... .......... .......... .......... .......... .......... 142 ATAATTGGAT CTTTGTGACT AAGATCCATT ACTCCTTACC CAACTTGTTT AATCTAGCTA 15387 .......... .......... .......... .......... .......... .......... 142 ATAATGACAC AACTCTCTAT AACCAAAACA ATATTCAACG TGGATACCGA CTTACACTCC 15447 .......... .......... .......... .......... .......... .......... 142 CTGAAATTTC CGACTTTATA TACATTTTTC CCAGAAACAA TTCCAAAACA AAGAACTAAA 15507 .......... .......... .......... .......... .......... .......... 142 CCAACAATAA TGACCCAAAT GAAGATAGGC AGAAATGTAG ATAACTCATG AAAACAGCAC 15567 .......... .......... .......... .......... .......... .......... 142 TATCAGGTTT TCCCCAAAGA AGGAAAAATC AGGCAAACCA CATTAAGAAT CCATGCAAAT 15627 .......... .......... .......... .......... .......... .......... 142 TTAGAATTCA ATCTCATCAC AGGCTCACCC CAATATATCA TTATCCCATT GCATCAATAA 15687 .......... .......... .......... .......... .......... .......... 142 TCTGAGAATA AATTACATAC ACCCTCAAAA GTCAAAAGCT TCACCTTGTT AAAGATATCC 15747 .......... .......... .......... .......... .......... .......... 142 TCAATAAAAG ACACACAACA CAATCAAACA CAACTATTCT TCAAATCCAA GCTAATTGGG 15807 .......... .......... .......... .......... .......... .......... 142 GTCACCCAAA AACACATCTG TTTGAAAAAT GAAGAGTATA GGCCCAAACA AATTAATTTC 15867 .......... .......... .......... .......... .......... .......... 142 TGCTCGATTC TTGGAAAAAA CAATCAAGAA TTGACAAAAA AGATTAGCGG AGAAAATAAG 15927 .......... .......... .......... .......... .......... .......... 142 AAAGAATCAA TTGGTCAGAT AAAGGCAATG ACTTTTCAAA ATATTGGGAA GTTTCTTCGA 15987 .......... .......... .......... .......... .......... .......... 142 AAGTTCTTGT TGCACCTGCG ATTGTCAGTT GAATTTTTTA ACATTTTCTT GATTATTTTT 16047 .......... .......... .......... .......... .......... .......... 142 AAGATAAGAG TTGTCCAGTA ATGGTATGTC CACCAACCCA AAATATAAAA TTTGTAAAAC 16107 .......... .......... .......... .......... .......... .......... 142 AGAGAAGAAA ATACCGCATT TGTAGCCTGT GTTCCATAGA ATGCGGTTGC TGAATTTTCT 16167 .......... .......... .......... .......... .......... .......... 142 GCTTCCTCTT GTAATGCTGA AAAGGAAGTT ACAGCGGATT TATTGAATAG GATGGATGTG 16227 .......... .......... .......... .......... .......... .......... 142 GTGGCACACA TAGGTTAGGT TGTTGAGGTT TTTCGTTTCG ATTCGAGTTT TAGATATAAA 16287 .......... .......... .......... .......... .......... .......... 142 AACTTTTTGT TAAAGAGCGA TAAAATTATT ATTTTTTCAT TCGATTCGAG TGCTGGTTGT 16347 .......... .......... .......... .......... .......... .......... 142 AAAAGAATTC TTAATAGAAA AGATTTTCTC AAATGAAATC TCAAGTATAT GTCAAATTTT 16407 .......... .......... .......... .......... .......... .......... 142 AATGTGACTA TTAAACACCT AACGAAAATC AAAAAGTAGT AGAGAATTAA AAAATTAATG 16467 .......... .......... .......... .......... .......... .......... 142 CAACTCATAA ATTATCTATC CTTATTATTT TCAAGATTAT TATGGATAAA TAGAATAATA 16527 .......... .......... .......... .......... .......... .......... 142 TTTACAAAAT TATAATTGAT AGGGAACTAG CATCTGAAAT TGGTAGGTAA CTAATATCTA 16587 .......... .......... .......... .......... .......... .......... 142 CTTTCTCTCA TGATGATCAA GGATATTATA TATTTTTATA TTTATATATA AATTTAAAAA 16647 | || | |||||||| | || ||| | | || | | .......... .......... ...TGGTACA CCTTTTTATA TATAAATACA TACTTCATA- 178 TAATTAATAA ATTTAATTAA GAATTTTAAG CTTATTGTTT TCTTTCGTTA TCTACACATA 16707 || |||||| ||| | TATTTAATAT .......... .......... .......... .......... .....ACACA 193 TTAAAATTGG CAAGTTCATA AAAACTGCAT AAACTAGACT TTACAAGATT GAATATTTAA 16767 || || CAAACATCT. .......... .......... .......... .......... .......... 202 TCGTTTATTT TTATCCAGTT ATTAATAACT TTATTATTTT AGATAATAAT TGATAGAATG 16827 .......... .......... .......... .......... .......... .......... 202 AAGTATGAAC GCTTATAACA AATCCTATTA ATATAAAGAA ATATCGACCT ACTTTTATCA 16887 .......... .......... .......... .......... .......... .......... 202 TTCACATAAA GATAATCAGA GTTTTTACGA AAAAAATTTA TTAATGAAAA AAGATATTTA 16947 .......... .......... .......... .......... .......... .......... 202 ACGGATAAAA AATATTAAAC TAAGTGCTTG TAACTCTTTT ATAAAAGTCT CAATCAATTA 17007 .......... .......... .......... .......... .......... .......... 202 ATTATTTTGA AGATTTTTTA TAATTATTTA TGTGATATTA TTTAATTAGA CATTAATTTT 17067 .......... .......... .......... .......... .......... .......... 202 TTTTAAAAAG AATCTACGAT TTGAAACAAA TCTAAAACAA AACAATTTGA CAATAATTAA 17127 .......... .......... .......... .......... .......... .......... 202 TGACAAAATA ATATCTAATC ACTGGCCTCT ATTTCTTGGC ATGTTTTTTG TGCAATTTGA 17187 .......... .......... .......... .......... .......... .......... 202 TGGGACCTAA AAAGCATCTA GGTTTTAGAT TTTTTACTTT TGCGTGTACA TGAATGACAA 17247 .......... .......... .......... .......... .......... .......... 202 AGTACTGTTA TTTTATGGGA AAAAAATAAT TTAACTAGAT TCTGATTCTT AAGTGTTTTT 17307 .......... .......... .......... .......... .......... .......... 202 GGTGTAATAT TTAATAAAAA AGTTTTATGT ATATATTTAG CGTTTGTTTG AATTGATTTA 17367 .......... .......... .......... .......... .......... .......... 202 AAAATTATTT TTAATTTAAA AATAAAAAGT AGAGGAAATT TATATTTTTG GTTTTAAATT 17427 .......... .......... .......... .......... .......... .......... 202 TATTTTTAAG TCATTTAAAA TTTGTATCAA AGGGACAAAA ATGGCTCAGG AAGAAAATCA 17487 .......... .......... .......... .......... .......... .......... 202 ATCAAAGTTT TGTTTTAAGC CTTTAAATTA TTTCATTGTA ACAAATAAGT AGTAAAAAAT 17547 .......... .......... .......... .......... .......... .......... 202 AAAACTATTA TTATGAACTA ATACGAATAA AAATTCAAGC ACGAATAACA AAAAAATACT 17607 .......... .......... .......... .......... .......... .......... 202 AATATGATGT AATGATTGGA GATGCCAAAT AGCAATTTCA TGAACAAGAA CGAAAAAAAT 17667 .......... .......... .......... .......... .......... .......... 202 TGAACAAAAT AAGATATATA CAAATATAAA GATTTAAGGA GTCAACGCTA TTTTTATGCA 17727 .......... .......... .......... .......... .......... .......... 202 ACTATAATTC TAATTGATAA AGGAGATTTT GAGTTTTATA CTAATTCTAA AAATATTAAT 17787 .......... .......... .......... .......... .......... .......... 202 AAAAAAAGAC TATTAGATTT TGAATATATT AAACTTAAAC TATAATTCTA ATTAATAGAA 17847 .......... .......... .......... .......... .......... .......... 202 GAGATTTTGA ATTTTATATT AATTATAAAA AAAATTGTTA AATTTTAAAT GAGAGTATGT 17907 .......... .......... .......... .......... .......... .......... 202 ATATTTTTAA TGAAGGGATC TATTGCTTTG AATTCAAAAC AAACACTAAA TAATTTGAAA 17967 .......... .......... .......... .......... .......... .......... 202 ATAATAATAA TCAAAACATG AATTTTGAAA AAAAACATTC CTTCCCTGGG AATGGAGAAC 18027 .......... .......... .......... .......... .......... .......... 202 CCATGACATT GGGCACGGAA TATGTGGCAG CTGCTATTTG CGCTAGGCGA TTTCTTTTAC 18087 .......... .......... .......... .......... .......... .......... 202 AAGGGATGTC CTTTCAATTA TTTTATCCGT TATATATATG TGTATATATA TATATATTGA 18147 .......... .......... .......... .......... .......... .......... 202 TATAATTGAT AAAAAAATTT GATTAAGTCG TAAAGTTTTA CGTGACACAC TTTGGGTATG 18207 .......... .......... .......... .......... .......... .......... 202 CCTAGATCTG CCCCACAGCC CAAGTGATCC AACTATTAAG ATTTCACACT CTGTATATGT 18267 .......... .......... .......... .......... .......... .......... 202 CTAAAATGTC TGATATAATT ATTATTCTTT CCGTCTCATT TTACATGAGG TAACTTGATT 18327 .......... .......... .......... .......... .......... .......... 202 TCGCATAAGT TTTAAAAAGA AAGGAAGACT TCTAAAATTC ATGTTCTAAA ATGAATGATA 18387 | | ||| | | || ||| | || ||| ||| .......... .......... .........T TATAATA-AC AT-TTC-ATT AT-AATAATA 229 TAAATTTATG TGTTTATTCA TTCAAAGAAT ATAAATACTC CCTCCGTCCG AAATTGTTTG 18447 | || || | | | | | || | || | | ||||| ||||| || | ||||| || | TTAAGTTCTC TTTGAAATAT TTGGATTAAA AACAGTACTC CCTCCATCTG AAATTATTAG 289 TCATGTTGTG CTTATAGAAA GTCAATTTAA CTAATTTTCA AAGGTAAATT AGATCACATT 18507 ||||||| || ||||| ||| |||||||||| ||| |||||| |||||||||| |||||| | TCATGTTATG CTTATCAAAA GTCAATTTAA CTAGTTTTCA AAGGTAAATT GGATCACTAT 349 AATTCGATAT TTTAAACAAA AAAATTAGAT ATTCTAAAAC TATATGGAAA ATACTATAAA 18567 |||||||||| |||||| ||| || | ||||| |||||||||| |||||| ||| |||| |||| AATTCGATAT TTTAAATAAA AATACTAGAT ATTCTAAAAC TATATGAAAA GTACTGTAAA 409 T--T-ACATT TTTTGCATAT TAATATGATG AAAATAATTC TATCTTAAAA TGTTAGTCAA 18624 | | | || |||| ||||| ||||||||| |||| ||| | ||| ||| | | TCATAATTTT TTTTACATAT TAATATGATT AAAAAAATAC -ATC-TAATA T......... 458 AGTTTTTATA GTTTGACTTT AAAAATAGAA ACCATGACAA AC-AAAAATA GAAACTATGA 18683 | | || | | ||||||| |||| ||| | .......... .......... ........TA ATAATTTGAT TCTAAAAATA GAAATTATAA 490 CAAACAAAAC CGGACAGAGA AA 18705 | ||||| | ||| ||| || CGAACAATAA TGGAGGGAGT AA 512 hqPGS_C08HBa0037O11.1+_SGN-E285125+ (14728 14771,15132 15140,16611 16657,16703 16716,18357 18615,18653 18705) ******************************************************************************** EST sequence 106 -strand 826 n (File: SGN-E539633-) 1 AATTTTCAGC TAATAATTGA TCACGAGCTT CAACATGTGG TACACCTTTT TATATATAAA 61 TACATACTTC ATATATTTAA TATACGCACA AACATCTTTA TAATAACATT TCATTATAAT 121 AATATCAAGT TCTCTTTGAA ATATTTGGAT TAAAAACAGT ACTCCCTCCA TCTGAAATTA 181 TTAGTCATGT TATGCTTATC AAAAGTCAAT TTAACTAGTT TTCAAAGGTA AATTGGATCA 241 CTATAATTCG ATATTTTAAA TAAAAATACT AGATATTCTA AAACTATATG AAAAGTACTG 301 TAAATCATAA TTTTTTTTAC ATATTAATAT GATTAAAAAA ATACATCTAA TATTAATAAT 361 TTGATTCTAA AAATAGAAAT TATAACGAAC AATAATGGAG GGAGTAATAA TAAAGTTAAT 421 ACAAGAATTT ATCCATATAC ATGTAACTAA AATAAATAAA CAATCTCTAT TAAATACATG 481 TTTTTTTTTT GTTTTTGGAA AAAGTTTGTT CCGAAATTTT CGGCCAAGTA GTTTGACTAG 541 AAAAGGAAAA AACCGGAACT GTCACAACTG CATAACCTGA AATTCAGCCG GACATCTTTT 601 GGACTTCTTT TATGTGTACA ATTCATTTAT ATTGCTATCT AAGAGATAAT TAATTTTAAA 661 ATTAATTATT TTATTTTTAA AACTATAGAA ATGAGTTATC TGGTCTTAAG ATAATAAACA 721 TGATTAGCTT CCCATAAAAT AATCGACATG TGATATTTCT CATCATTCGT TATATGTATG 781 TTGTTTTTAT TATAAATAGA TGTTTTTAAA TAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 15245 to 26313): Exon 1 18357 18615 ( 259 n); cDNA 98 353 ( 256 n); score: 0.763 Intron 1 18616 18652 ( 37 n); Pd: 0.000 (s: 0.65), Pa: 0.849 (s: 0.62) Exon 2 18653 18705 ( 53 n); cDNA 354 407 ( 54 n); score: 0.632 Intron 2 18706 19015 ( 310 n); Pd: 0.905 (s: 0.64), Pa: 0.000 (s: 0.64) Exon 3 19016 19087 ( 72 n); cDNA 408 475 ( 68 n); score: 0.653 Intron 3 19088 19422 ( 335 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 4 19423 19443 ( 21 n); cDNA 476 495 ( 20 n); score: 0.857 Intron 4 19444 20536 (1093 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 5 20537 20563 ( 27 n); cDNA 496 522 ( 27 n); score: 0.704 Intron 5 20564 21783 (1220 n); Pd: 0.000 (s: 0), Pa: 0.402 (s: 0) Exon 6 21784 21793 ( 10 n); cDNA 523 532 ( 10 n); score: 0.700 Intron 6 21794 21831 ( 38 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 7 21832 21844 ( 13 n); cDNA 533 545 ( 13 n); score: 0.615 Intron 7 21845 24789 (2945 n); Pd: 0.181 (s: 0), Pa: 1.000 (s: 0) Exon 8 24790 24804 ( 15 n); cDNA 546 560 ( 15 n); score: 0.600 Intron 8 24805 25669 ( 865 n); Pd: 0.000 (s: 0), Pa: 0.866 (s: 0) Exon 9 25670 25676 ( 7 n); cDNA 561 567 ( 7 n); score: 1.000 PPA cDNA 808 826 MATCH C08HBa0037O11.1+ SGN-E539633- 0.724 477 0.577 C PGS_C08HBa0037O11.1+_SGN-E539633- (18357 18615,18653 18705,19016 19087,19423 19443,20537 20563,21784 21793,21832 21844,24790 24804,25670 25676) Alignment (genomic DNA sequence = upper lines): TTCTAAAATT CATGTTCTAA AATGAATGAT ATAAATTTAT GTGTTTATTC ATTCAAAGAA 18416 || ||| | ||| ||| | || ||| || || || || | | | | | || | || TTATAATA-A CAT-TTC-AT TAT-AATAAT ATCAAGTTCT CTTTGAAATA TTTGGATTAA 153 TATAAATACT CCCTCCGTCC GAAATTGTTT GTCATGTTGT GCTTATAGAA AGTCAATTTA 18476 | | |||| |||||| || |||||| || |||||||| | |||||| || |||||||||| AAACAGTACT CCCTCCATCT GAAATTATTA GTCATGTTAT GCTTATCAAA AGTCAATTTA 213 ACTAATTTTC AAAGGTAAAT TAGATCACAT TAATTCGATA TTTTAAACAA AAAAATTAGA 18536 |||| ||||| |||||||||| | |||||| |||||||||| ||||||| || ||| | |||| ACTAGTTTTC AAAGGTAAAT TGGATCACTA TAATTCGATA TTTTAAATAA AAATACTAGA 273 TATTCTAAAA CTATATGGAA AATACTATAA AT--T-ACAT TTTTTGCATA TTAATATGAT 18593 |||||||||| ||||||| || | |||| ||| || | | | ||||| |||| |||||||||| TATTCTAAAA CTATATGAAA AGTACTGTAA ATCATAATTT TTTTTACATA TTAATATGAT 333 GAAAATAATT CTATCTTAAA ATGTTAGTCA AAGTTTTTAT AGTTTGACTT TAAAAATAGA 18653 |||| ||| | ||| ||| || TAAAAAAATA C-ATC-TAAT AT........ .......... .......... .........T 354 AACCATGACA AAC-AAAAAT AGAAACTATG ACAAACAAAA CCGGACAGAG AAAGTATTCT 18712 || || | | |||||| ||||| ||| || ||||| | ||| ||| || AATAATTTGA TTCTAAAAAT AGAAATTATA ACGAACAATA ATGGAGGGAG TAA....... 407 AAAACTGAAT TATTACTTAA ATATAGAAAT ATGTCATCTT TTAAAACCGA TTAAAAAAAA 18772 .......... .......... .......... .......... .......... .......... 407 GTAAATCAGA ATAATATATA TTTTTTAATA TATATATATA TGAGTAACAT ATAATGTCAA 18832 .......... .......... .......... .......... .......... .......... 407 ATTACTAAAT AATGAAAAAT ATTGATCAAA CAAAAACATC CTATAGTAAT TGCAACATAT 18892 .......... .......... .......... .......... .......... .......... 407 AATGAATACA AAGAGGAGAA ACGAGTAAAA ATCTCAAAAG ATCATTTAAT TTTGACAATT 18952 .......... .......... .......... .......... .......... .......... 407 TATCTGCAAA ATTATTGAGA TATATTTTAT ATAAATTAAA TCATTCAATT TAAATTTTTA 19012 .......... .......... .......... .......... .......... .......... 407 TATCAATAAA ATCATTCAAC TAAATTTATC ACTATAAAAC TTAAAATTAA CATGAAAAAA 19072 |||||| | | | | |||||||| | || | || | || ||| || || ||| ...TAATAAA GTTAAT-ACA AGAATTTATC -C-AT-ATAC ATGTAACTAA AATAAATAAA 460 TAAATTCTTT TTAATATCAC AATAATAATA ATTAAAATAA TGAATTCGGA AACTAGTAGG 19132 || ||| | | ||| CAATCTCTAT TAAAT..... .......... .......... .......... .......... 475 ATATTTATTT TATTTCTTGT ATTAATTAAC ATTCCCAAAA GTATACAGAC AAGAGTTTGA 19192 .......... .......... .......... .......... .......... .......... 475 CACATTCAAT AGACTGATTT GGAGAAACAA AATAATTTGG ATACACTCCA TCTTTTATAT 19252 .......... .......... .......... .......... .......... .......... 475 CAATGTTATT TGTCTTGAGT ATTTTTTTTT ATAAAAAAAT CTATAGGAAA ATATTTTCAT 19312 .......... .......... .......... .......... .......... .......... 475 TAAGTAGGCG TTTAGAGAGA TTTTTTTTGT TAAAAAAAAA AAAAGTATTT GAAGTCATAC 19372 .......... .......... .......... .......... .......... .......... 475 TAGAAACAAT AATACGAAAG TTAAAATTGT ATTTTAATAT CTCAAAATTG ACATTTATTT 19432 |||| | ||| .......... .......... .......... .......... .......... ACATGT-TTT 484 TTTATTGTTT TATTTTATAA TGACATAGTA ATTTTGAAAA AAATTATTTT ATTATTTAAA 19492 ||| |||||| | TTTTTTGTTT T......... .......... .......... .......... .......... 495 TTATAAACAT GATATAAAAT TTAATTTATT TTGTTATGCC AAATTTTTTT TAAAAAGTGA 19552 .......... .......... .......... .......... .......... .......... 495 TAAATTTAAT TGAGTGATTT TATTGATATA AAATTTTAAG TTGAGTGTTT TTATTGATAC 19612 .......... .......... .......... .......... .......... .......... 495 AGATAAAAGT TCAATAGTTT TGCTAGACAA ATTTTAAAGT TCAGTGCCTT TTGAAATATT 19672 .......... .......... .......... .......... .......... .......... 495 TACTTAGTTA TAAACATCAT AAACACACTT AAACTTTACA CGATTATTAA TTTTATTTTT 19732 .......... .......... .......... .......... .......... .......... 495 AAATCTTAAA AATCTTTGTT TATTTAATTA ATTAAACTTA AATTACTCCC GGTCTTCTAA 19792 .......... .......... .......... .......... .......... .......... 495 CATTAATAAG ATATACTTTA AAATTCTCGA CAAATTTAAA AGTGTTTTCA ATACTTTTCT 19852 .......... .......... .......... .......... .......... .......... 495 TGATTTTTTT ATTAAGAGCT CGTTTGGCCA TAGTTTTTTC AAATAATATT TAGGGGAAAA 19912 .......... .......... .......... .......... .......... .......... 495 TTTGGCAAAT AATATATGTT CATACAATTT GTTATCATTT GACAAATTTT CAAATAATAT 19972 .......... .......... .......... .......... .......... .......... 495 TTTTTTCTAG TATTTTGGCT AAATCTCATT ATTTGAGATC TTTTGAAAAT TGATTTTTTA 20032 .......... .......... .......... .......... .......... .......... 495 CACCAAACTT TAATCTTTTA CGAAAACACC ATCTATAGTA GTTGTTTGCG TTATATTACA 20092 .......... .......... .......... .......... .......... .......... 495 TAATCTTTTT ACGTGAACAT CAAAGTAGTG ATGAAATATT CTCTGAATAT GAAAGTGATG 20152 .......... .......... .......... .......... .......... .......... 495 ATATAATTGT TGAATAAAAT GATAAATAGT TAGCTCATGT GCTTTGTCTA CTTCATAATG 20212 .......... .......... .......... .......... .......... .......... 495 TATGGAATGA TGCTTGTTGC ACCACTTCAA ACTACCACAT TGCCTTAGTG TCATGAGTAC 20272 .......... .......... .......... .......... .......... .......... 495 TTCTTGCTAT TTATTGTAAT GAAGATCCAA TTGATTTGTA ATACGAATTT ATGGTAAATT 20332 .......... .......... .......... .......... .......... .......... 495 TTGATAGTTT AAAAAAACTA TGGATAAATC ATTTTTTTTT AAAAAAATGA AATATATTTC 20392 .......... .......... .......... .......... .......... .......... 495 TTAAATAGAT CAAACACATG TCTAGTTAAA TTTTACCCAG ATAATATTTG TAATATTTTA 20452 .......... .......... .......... .......... .......... .......... 495 AAAATATATG ACGAAATACC GATAAAGCTA CTCATAATGT GTCACATGAC ATATCAAATA 20512 .......... .......... .......... .......... .......... .......... 495 TATATCTAAA ATTAATTAGT CGAGTAGATA ACATTTGTTA CGAAACATTA GAAAAGGAAT 20572 | || | | |||||| ||||| || | .......... .......... ....TGGAAA AAGTTTGTTC CGAAATTTTC G......... 522 AAGAAAGAAA AAGTAATGGA TATGTAGATG ATATAAAATA TTGGGAATCC TCACTTTACC 20632 .......... .......... .......... .......... .......... .......... 522 CGCCAATTGT CCTTCTCTCT TCCACATTAT CCATTAACCC CCAATTCCTT CACTCTTCAA 20692 .......... .......... .......... .......... .......... .......... 522 CCTCCAATTG CTGCCGCCGA TCAAATGTGG AGCTATGGTT AATCTGCCAA TGGACCAAAT 20752 .......... .......... .......... .......... .......... .......... 522 GCATCACTTT CAAGCCTTAC CTGCTCATAT TCATGGAGAT ATGTCAGTGC TTCTGTTTCC 20812 .......... .......... .......... .......... .......... .......... 522 TTTTAGAAAA TGCTGGCAGC AACAGAAACA AAACCATTTT CAGAGACCGG CATTGTCTTC 20872 .......... .......... .......... .......... .......... .......... 522 TTCTTCCTCG CCGGTCTCCG GCTGTCAGCC CAGAAGGTAT TATTTGGGCA GATTCAAAAG 20932 .......... .......... .......... .......... .......... .......... 522 ACGCTTCCGT TCTGAACCTA ATCTAAAACC ACTAACTTCC CGCATTGTTG ATCTTACTCG 20992 .......... .......... .......... .......... .......... .......... 522 CAGAAGGCAA CTCCACCAGG TCTCTCTCAG GGTTATTTTC CCTCAAGTTC TGTTCCTACT 21052 .......... .......... .......... .......... .......... .......... 522 GCTAAATTAG AATTTTTTTT TAATCGAGAC TGCTTAGTAA TGTATTATTA GTTTCAAAAC 21112 .......... .......... .......... .......... .......... .......... 522 AAGGAACATA AATTAACTGA AAATGTCTAG GCATACTACA TCATTGATTT AAATTATTGA 21172 .......... .......... .......... .......... .......... .......... 522 ACTGAAACAT AACACATGAG TTATGGTCAA AACATTTGCT TCTTTCGAAG AGTGGATATA 21232 .......... .......... .......... .......... .......... .......... 522 CGGCTAGTCC AAGTACTAAG AAGAAATGCT TTCACAGTAC AAGCACTTCT TAATGCTAGA 21292 .......... .......... .......... .......... .......... .......... 522 ATTGGTAAGA CTTATCATTG TTATGTTGCA GTTCTACCCT GTTGTAGAAA CTTTGACAAG 21352 .......... .......... .......... .......... .......... .......... 522 CAGCCTACAA CACGATAACA TCAGCTACTG TTGTTTTCTT CTCTTGTGGT TATGCCTATT 21412 .......... .......... .......... .......... .......... .......... 522 TTTGTATTAC ATACTATCTT CTACTACTCC AAACATTCCT CAAGGTGGCA GATTGTTGTG 21472 .......... .......... .......... .......... .......... .......... 522 TGACACTCAG CTGATAATTT GGACAGTTAT GTTTGAGATG TCCCAAGGCA TTTGAAAGAT 21532 .......... .......... .......... .......... .......... .......... 522 TTACTGGATA GATGTCCATT ACATAAAACA TGCATGAAGA TCTATCAAAA GTTAAAACTT 21592 .......... .......... .......... .......... .......... .......... 522 TTTCCCATAA TCAACTTAGA AGGTTTAGAA CCTGCGTTAC ACTAAGGAGT TCTAACCTGT 21652 .......... .......... .......... .......... .......... .......... 522 CTTTTAAAAT GTTGGCGGTC TTAGCATCTT TACCTCAACT TTTTACTCAG ACTTAAATCT 21712 .......... .......... .......... .......... .......... .......... 522 ACCTGAACCA TAATCTTGGG TTTAAATTAT TATATTTTTG TAGCTTGAAT GTTTGAATTT 21772 .......... .......... .......... .......... .......... .......... 522 CTTTTATGAA GCATAAGTAG TGTCTCCTTG CTTTGTAAGC ACCTTCATGT ACTGACAAGT 21832 |||||| | | .......... .GCCAAGTAG T......... .......... .......... .........T 533 CACCAAGAAA ATGTAAAACA ATGCAGTAGT ACAAAACTAA ATTGAACTGT TATTTTTGAA 21892 | ||||| | TGACTAGAAA AG........ .......... .......... .......... .......... 545 ATGCTTAATT TTTTTACAAC TGGTTTTAAC TCCCAAAATT GCTCATGGAT CTCTAGATTT 21952 .......... .......... .......... .......... .......... .......... 545 TTGTGGAAAT TGAGATTGCA AAGAAGCGAC ATGGACAGTT GAACACCATT GTTATGAATG 22012 .......... .......... .......... .......... .......... .......... 545 CAGTGATGCA GGCTTGTGTT CATTGTGCTG ATATAGAATC TGCCTTGAGG CTCTTTGATG 22072 .......... .......... .......... .......... .......... .......... 545 AAATGTCTGG CCCAGAGGGT TGTGGTGTTG ATAATATCAC TTACGCTACA CTTTTAAAGG 22132 .......... .......... .......... .......... .......... .......... 545 TATTTGTAAC ACTGTGGTTT CCATATAATT ATTTTAAAAG TTGTAGCCTG TAATAGTGGA 22192 .......... .......... .......... .......... .......... .......... 545 AATTGAAGTA CTCAACATAT CTATGCCTGT TAAATATGTT TCCTGGTAGG GTTTGGGTGA 22252 .......... .......... .......... .......... .......... .......... 545 TGCCCGAAGA ATTGATCAAG CATTTCAATT ACTTGAGGCT GTTGAACAAG GTACTGCTGC 22312 .......... .......... .......... .......... .......... .......... 545 TGGAAGTCCA AAACTTTCAC CTCCCCTTGT TAGAGGTCTG CTGAATTCTC TAATTGAAGC 22372 .......... .......... .......... .......... .......... .......... 545 AGGTTAGTTT GTTCTTGGAG TAAATGGAAT TCAGGACATG CTTTTATTGT TCTCCGAGAT 22432 .......... .......... .......... .......... .......... .......... 545 TATATTGCTG GTGAAATATT TGGAGATGTA GGAGTAGGAT TAACCCCTTA TCGATGTTTG 22492 .......... .......... .......... .......... .......... .......... 545 ATATCACTAC TTAAAGAAGG ATGGTAACTC CACGACATCT GAGCTATACA AGTGTAGAGG 22552 .......... .......... .......... .......... .......... .......... 545 ATTTGTATTA CCACATCATA TGTTTCTGAA TCAATGTTTT TCTTTTTCTG GTTAATTGTT 22612 .......... .......... .......... .......... .......... .......... 545 AGATTTTCCT AATTAAAGCT ATCAAGTTCA AGTGACATTG TGATTGGAGT TCTTTCGGTA 22672 .......... .......... .......... .......... .......... .......... 545 AGTAAGTGAA CATATGAATA CTGCTGTCCT AAAGATGCAC CGGTCCATAG ATGTGGAACT 22732 .......... .......... .......... .......... .......... .......... 545 ATGGCAAGTG AAGGTGTTAA GAGATGGGTA AACCAAAAAT TACACAGAAG GAAGTGATCT 22792 .......... .......... .......... .......... .......... .......... 545 AGAAAGACCT ACAAATGCTT GGTATCAATA CAAACTTAGC TAAAGATTGA GCATGATGGA 22852 .......... .......... .......... .......... .......... .......... 545 AGTAAAAGAT CCATATAGGT GATAACTACT AGTCGAGGAT AGGTTTTAGA CTTGTTAGAG 22912 .......... .......... .......... .......... .......... .......... 545 AACTTCTAAT AATAATATTG TTAGAGAATT CATATTTTTT TAAAAATTAT TCTTGATAAA 22972 .......... .......... .......... .......... .......... .......... 545 AATTATTACT ATTATTTATG TGCATATAAC TTATTTTTCA CTTCTATTTT ATTTAGTTTG 23032 .......... .......... .......... .......... .......... .......... 545 ATGATGATAT GTCATGAGCT TAAATGAAAA ATAGGGATTC ATATAGCCGG CCTCAACTTG 23092 .......... .......... .......... .......... .......... .......... 545 GTGGAAAATC AGTTAAGTGA TTTCACTGAT GATATCAAGG TCATGAGGTG TAGTTGTGGT 23152 .......... .......... .......... .......... .......... .......... 545 TGTTGTAAGT AAGTCTAACA TTTTGTTGAA ATATAGAAGC ACACAAATTG TGCTGTAGCT 23212 .......... .......... .......... .......... .......... .......... 545 TACATCAGGA TCCTTACAAA AAGAAATAGG TTTTGTATCT AGGAACCTTA CAACAAAACT 23272 .......... .......... .......... .......... .......... .......... 545 TCAGTTCCTA TCTACTCTAA ACTGAGGGTA AACTAAGAAA ATTTTAGAAA GCTACATATA 23332 .......... .......... .......... .......... .......... .......... 545 CAATATACAT ACTGCATTTT GCACCAAAAT TTTAATCTTC TAAAATATGT GGAAGATTTG 23392 .......... .......... .......... .......... .......... .......... 545 GGGTCTTGAA AGTTGGTCTT CTTATCTCTG GATCCTTGTG CAAATTCGTA AATAAATTGT 23452 .......... .......... .......... .......... .......... .......... 545 AGGATATGCT CTTTGACTTC TAGGGCACCT TTTTCCGTTT ATAGTTTGTC AATGTGGTTA 23512 .......... .......... .......... .......... .......... .......... 545 TGTCTTCCGA GGATATTGCC CATCTTTTGG AAGAAACTAA TTTTTATTAC ATTACTTTAG 23572 .......... .......... .......... .......... .......... .......... 545 TCACAGACAC TTAGATTTTT TTGTCTTGGA GATTTCTTCA TGTTCTTCCA CCTTGTGTAA 23632 .......... .......... .......... .......... .......... .......... 545 GTCCATCTCT AGCCCTGCAT CCTTGTTCTT TGATAGAATT CTTCTTCCTT CAACTCTCTA 23692 .......... .......... .......... .......... .......... .......... 545 CTTTCTGCCA GCCCATTTAA ATCCAGTAAC TCTTGAAGGA TGTCATTTTT CTTTTTTGAT 23752 .......... .......... .......... .......... .......... .......... 545 GATTCCCTAA GGTCTTGTTA TTCCATTCCG TTGATTTACT TTGCTGACCT TTTGGCCGAA 23812 .......... .......... .......... .......... .......... .......... 545 CTGAAATCAG GTCTGTCATT TATTTTTGGA ATTGTTTAGT ATCTTTACAT CAGCTATACA 23872 .......... .......... .......... .......... .......... .......... 545 TAATTGTTTT TGGTGTAAAC AATTATGTAG ATGTAGATCA AATCATAGAA CTGATTGGAA 23932 .......... .......... .......... .......... .......... .......... 545 GCTTTGTAGG TTTTGTTTGG GTCATGGTTG TAACCCTTTT TAATGTCGGC CAGCATTTGA 23992 .......... .......... .......... .......... .......... .......... 545 ATACTACTTA CCAATTGTTA AATAAATAAA ATCTGAGATA GTTTTTCTAG CACTAGCCTC 24052 .......... .......... .......... .......... .......... .......... 545 ATTATAGAAT CAAGTATCAT GCGAGGGCTT TTCCAGAATG AGATGACTAT GAGTTTGTGG 24112 .......... .......... .......... .......... .......... .......... 545 AAGAAAATAA AACAAGAGTT TGACTCTTTA TCATTCTTTA CTTTCTCTAC TAACTTGTCA 24172 .......... .......... .......... .......... .......... .......... 545 TTTTATTTCC CTTCTTTTTT CTTGAATGCT TTCCACACAA ATGCCAGGTG GTGCTTAATT 24232 .......... .......... .......... .......... .......... .......... 545 ATTGGATATA GTTGTTTGTG TCAAGATTTA TGTCTTGGCT TACTTAATAT ACCTCCTTTA 24292 .......... .......... .......... .......... .......... .......... 545 CTTCTGCCTT TCTAGTGCAG GGGATCTACG CCGTGCTAAT GGTCTTCTTG CACGTTATGG 24352 .......... .......... .......... .......... .......... .......... 545 TTTTGTATTT CACGAGGGCG GATATCCATC CATCTTGGTC TACAACTTAT TGATGAAGGT 24412 .......... .......... .......... .......... .......... .......... 545 CTTCTGCTTA CCCACAAGTT TAACTTCTGG ATTTGTTGGA TCTCTGCATT TATCATTCTT 24472 .......... .......... .......... .......... .......... .......... 545 TATAAAAAAA ATCATACATC AAATTATTTC TCAGAGCCAT TTCCTAAATT TCAGGGGTAC 24532 .......... .......... .......... .......... .......... .......... 545 ATAAACACAG GTTGTCCTGA GGTAGCGCTA CGTTTGCATG ATGAAATACT AAGACATGGA 24592 .......... .......... .......... .......... .......... .......... 545 CTGAACCTTG ACAAGCTCAC ATATAATACA CTAATCCTAG CATGTGTGGA GTCTGAAAAG 24652 .......... .......... .......... .......... .......... .......... 545 TTGGATGTTG CAATGCAGTT CTTTGAGGGC ATGAAGGTTT CATCTCTGAA CTCGAAAGGC 24712 .......... .......... .......... .......... .......... .......... 545 CAGTTTAGAG CTCATTATTT GCTCAGATGA TGTTGCAAAC ATTGTTGTAA TCTGAACTGT 24772 .......... .......... .......... .......... .......... .......... 545 ATATTTGAAT GGTGCAGGAC AGAGCACAAA CTGCTGCTGA TGATGACATT TTACCAGATG 24832 || | | | || || .......... .......GAA AAAACCGGAA CT........ .......... .......... 560 TAGTTACCTA CACTACGTTG CTGAAGGTGC GTGTGCATGA TGCATTTCGT ATACAGTTAA 24892 .......... .......... .......... .......... .......... .......... 560 AAATAATCTT TTGTAACCTG TACTGAGATA AATAGGTCTC AGATAGATTG AGCAGTAGTT 24952 .......... .......... .......... .......... .......... .......... 560 GAGAGTATGA GATGTTGTGC TATTGATCTT AATTCCTTTT TATTCTTACG AAGTTATATA 25012 .......... .......... .......... .......... .......... .......... 560 TCTTAATGTA TACCATCTTT TCCATCAAAA TTCACAGTGT AGTAATTCTT TCACCAGATA 25072 .......... .......... .......... .......... .......... .......... 560 AGTATATGGT TTTAACGAAA GAGTATATGG TTTTAACGAA AGAGACTCAA TTGAAACTTT 25132 .......... .......... .......... .......... .......... .......... 560 GCCAGAAACC TGTTCGCTCT TACATTTGAT ATGATGAATT AGGTTCTCTA CTGTCATTTC 25192 .......... .......... .......... .......... .......... .......... 560 TTGTTAGTGT TTAGAATTTC TGCTCCTTTT TGCAGGGTTT TGGTCATGCC CAGGATCTCA 25252 .......... .......... .......... .......... .......... .......... 560 TTTCAGTTCA AAAGATTTTC ATAGAAATGA AATTATCCAA CAACTTGCAT ATTGATCGAG 25312 .......... .......... .......... .......... .......... .......... 560 TTGCTTACAC TGCAATCATT GATGCCTTCT TGAATTGTGG GACAATAAAA GGTATTCTTT 25372 .......... .......... .......... .......... .......... .......... 560 ATGCAGATAT TACTAAACTT CTACAACTCA GGGTTATGAG GTATATTCAA AAAACTCATG 25432 .......... .......... .......... .......... .......... .......... 560 TCAAGTCCAA ATAATAATTA ACATATGGTG GTTATCACTG GTGAAACTGA AGTAACATTT 25492 .......... .......... .......... .......... .......... .......... 560 AACACAACAT TGTCCATATT GAATCTTAGC ATCTACAGAT AAGGGTCTAA AAGGCATGCA 25552 .......... .......... .......... .......... .......... .......... 560 TACTAATTGC TTCCACAAAA AATTTACTAT GTATGTCATG TGAATTCTTC TATCTATGTG 25612 .......... .......... .......... .......... .......... .......... 560 CAAGTATATC AGCTTTCTTT GAGTTTCCTC CACTTACAAT TTGATAAACT GATTCAGGTC 25672 ||| .......... .......... .......... .......... .......... .......GTC 563 ACAA 25676 |||| ACAA 567 hqPGS_C08HBa0037O11.1+_SGN-E539633- (18357 18615,18653 18705,19016 19087,19423 19443,20537 20563) ******************************************************************************** EST sequence 7 +strand 632 n (File: SGN-E346693+) 1 TCCAATTGCT GCCGCCGATC AAATGTGGAG CTATGGTTAA TCTGCCAATG GACCAAATGC 61 ATCACTTTCA AGCCTTACCT GCTCATATTC ATGGAGATAT GTCAGTGCTT CTGTTTCCTT 121 TTAGAAAATG CTGGCAGCAA CAGAAACAAA ACCATTTTCA GAGACCGGCA TTGTCTTCTT 181 CTTCCTCGCC GGTCTCCGGC TGTCAGCCCA GAAGGTATTA TTTGGGCAGA TTCAAAAGAC 241 GCTTCCGTTC TGAACCTAAT CTAAAACCAC TAACTTCCCG CATTGTTGAT CTTACTCGCA 301 GAAGGCAACT CCACCAGATT TTTGTGGAAA TTGAGATTGC AAAGAAGCGA CATGGACAGT 361 TGAACACCAT TGTTATGAAT GCAGTGATGC AGGCTTTGTG TTCATTGTGC TGATATAGAA 421 TCTGCCTTGA GGCTCTTTGA TGAAATGTCT GGCCAGAGGG TTGTGGGTGT TGATAATATC 481 ACTTACGCTA CACTTTTAAA GGGTTTGGGG TGATGCCCCG AGAAATTGAT CAAGCATTTC 541 AATTACTTGA NGGCTGTTGA ACAAAGTACT GCTGCTGGGA AGTCCAAAAC TTTCACCTCC 601 CCTTGTTAGA GGTCTGCTGA ATTCTCTAAT TG Predicted gene structure (within gDNA segment 20095 to 22978): Exon 1 20695 21011 ( 317 n); cDNA 1 317 ( 317 n); score: 1.000 Intron 1 21012 21948 ( 937 n); Pd: 0.431 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 2 21949 22131 ( 183 n); cDNA 318 501 ( 184 n); score: 0.967 Intron 2 22132 22241 ( 110 n); Pd: 0.986 (s: 0.93), Pa: 0.994 (s: 0.80) Exon 3 22242 22368 ( 127 n); cDNA 502 632 ( 131 n); score: 0.898 MATCH C08HBa0037O11.1+ SGN-E346693+ 0.970 627 0.992 C PGS_C08HBa0037O11.1+_SGN-E346693+ (20695 21011,21949 22131,22242 22368) Alignment (genomic DNA sequence = upper lines): TCCAATTGCT GCCGCCGATC AAATGTGGAG CTATGGTTAA TCTGCCAATG GACCAAATGC 20754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAATTGCT GCCGCCGATC AAATGTGGAG CTATGGTTAA TCTGCCAATG GACCAAATGC 60 ATCACTTTCA AGCCTTACCT GCTCATATTC ATGGAGATAT GTCAGTGCTT CTGTTTCCTT 20814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACTTTCA AGCCTTACCT GCTCATATTC ATGGAGATAT GTCAGTGCTT CTGTTTCCTT 120 TTAGAAAATG CTGGCAGCAA CAGAAACAAA ACCATTTTCA GAGACCGGCA TTGTCTTCTT 20874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAAAATG CTGGCAGCAA CAGAAACAAA ACCATTTTCA GAGACCGGCA TTGTCTTCTT 180 CTTCCTCGCC GGTCTCCGGC TGTCAGCCCA GAAGGTATTA TTTGGGCAGA TTCAAAAGAC 20934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCTCGCC GGTCTCCGGC TGTCAGCCCA GAAGGTATTA TTTGGGCAGA TTCAAAAGAC 240 GCTTCCGTTC TGAACCTAAT CTAAAACCAC TAACTTCCCG CATTGTTGAT CTTACTCGCA 20994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCCGTTC TGAACCTAAT CTAAAACCAC TAACTTCCCG CATTGTTGAT CTTACTCGCA 300 GAAGGCAACT CCACCAGGTC TCTCTCAGGG TTATTTTCCC TCAAGTTCTG TTCCTACTGC 21054 |||||||||| ||||||| GAAGGCAACT CCACCAG... .......... .......... .......... .......... 317 TAAATTAGAA TTTTTTTTTA ATCGAGACTG CTTAGTAATG TATTATTAGT TTCAAAACAA 21114 .......... .......... .......... .......... .......... .......... 317 GGAACATAAA TTAACTGAAA ATGTCTAGGC ATACTACATC ATTGATTTAA ATTATTGAAC 21174 .......... .......... .......... .......... .......... .......... 317 TGAAACATAA CACATGAGTT ATGGTCAAAA CATTTGCTTC TTTCGAAGAG TGGATATACG 21234 .......... .......... .......... .......... .......... .......... 317 GCTAGTCCAA GTACTAAGAA GAAATGCTTT CACAGTACAA GCACTTCTTA ATGCTAGAAT 21294 .......... .......... .......... .......... .......... .......... 317 TGGTAAGACT TATCATTGTT ATGTTGCAGT TCTACCCTGT TGTAGAAACT TTGACAAGCA 21354 .......... .......... .......... .......... .......... .......... 317 GCCTACAACA CGATAACATC AGCTACTGTT GTTTTCTTCT CTTGTGGTTA TGCCTATTTT 21414 .......... .......... .......... .......... .......... .......... 317 TGTATTACAT ACTATCTTCT ACTACTCCAA ACATTCCTCA AGGTGGCAGA TTGTTGTGTG 21474 .......... .......... .......... .......... .......... .......... 317 ACACTCAGCT GATAATTTGG ACAGTTATGT TTGAGATGTC CCAAGGCATT TGAAAGATTT 21534 .......... .......... .......... .......... .......... .......... 317 ACTGGATAGA TGTCCATTAC ATAAAACATG CATGAAGATC TATCAAAAGT TAAAACTTTT 21594 .......... .......... .......... .......... .......... .......... 317 TCCCATAATC AACTTAGAAG GTTTAGAACC TGCGTTACAC TAAGGAGTTC TAACCTGTCT 21654 .......... .......... .......... .......... .......... .......... 317 TTTAAAATGT TGGCGGTCTT AGCATCTTTA CCTCAACTTT TTACTCAGAC TTAAATCTAC 21714 .......... .......... .......... .......... .......... .......... 317 CTGAACCATA ATCTTGGGTT TAAATTATTA TATTTTTGTA GCTTGAATGT TTGAATTTCT 21774 .......... .......... .......... .......... .......... .......... 317 TTTATGAAGC ATAAGTAGTG TCTCCTTGCT TTGTAAGCAC CTTCATGTAC TGACAAGTCA 21834 .......... .......... .......... .......... .......... .......... 317 CCAAGAAAAT GTAAAACAAT GCAGTAGTAC AAAACTAAAT TGAACTGTTA TTTTTGAAAT 21894 .......... .......... .......... .......... .......... .......... 317 GCTTAATTTT TTTACAACTG GTTTTAACTC CCAAAATTGC TCATGGATCT CTAGATTTTT 21954 |||||| .......... .......... .......... .......... .......... ....ATTTTT 323 GTGGAAATTG AGATTGCAAA GAAGCGACAT GGACAGTTGA ACACCATTGT TATGAATGCA 22014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAAATTG AGATTGCAAA GAAGCGACAT GGACAGTTGA ACACCATTGT TATGAATGCA 383 GTGATGCAGG C-TTGTGTTC ATTGTGCTGA TATAGAATCT GCCTTGAGGC TCTTTGATGA 22073 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATGCAGG CTTTGTGTTC ATTGTGCTGA TATAGAATCT GCCTTGAGGC TCTTTGATGA 443 AATGTCTGGC CCAGAGGGTT GT-GGTGTTG ATAATATCAC TTACGCTACA CTTTTAAAGG 22132 ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| AATGTCTGG- CCAGAGGGTT GTGGGTGTTG ATAATATCAC TTACGCTACA CTTTTAAAG. 501 TATTTGTAAC ACTGTGGTTT CCATATAATT ATTTTAAAAG TTGTAGCCTG TAATAGTGGA 22192 .......... .......... .......... .......... .......... .......... 501 AATTGAAGTA CTCAACATAT CTATGCCTGT TAAATATGTT TCCTGGTAGG GTTT-GGGTG 22251 | |||| ||||| .......... .......... .......... .......... .........G GTTTGGGGTG 512 ATG-CCCGAA GAATTGATCA AGCATTTCAA TTACTTGA-G GCTGTTGAAC AAGGTACTGC 22309 ||| ||||| ||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ATGCCCCGAG AAATTGATCA AGCATTTCAA TTACTTGANG GCTGTTGAAC AAAGTACTGC 572 TGCT-GGAAG TCCAAAACTT TCACCTCCCC TTGTTAGAGG TCTGCTGAAT TCTCTAATTG 22368 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGGGAAG TCCAAAACTT TCACCTCCCC TTGTTAGAGG TCTGCTGAAT TCTCTAATTG 632 hqPGS_C08HBa0037O11.1+_SGN-E346693+ (20695 21011,21949 22131,22242 22368) ******************************************************************************** EST sequence 48 +strand 708 n (File: SGN-E548564+) 1 CTGCCGCCGA TCAAATGTGG AGCTATGGTT AATCTGCCAA TGGACCAAAT GCATCACTTT 61 CAAGCCTTAC CTGCTCATAT TCATGGAGAT ATGTCAGTGC TTCTGTTTCC TTTTAGAAAA 121 TGCTGGCAGC AACAGAAACA AAACCATTTT CAGAGACCGG CATTGTCTTC TTCTTCCTCG 181 CCGGTCTCCG GCTGTCAGCC CAGAAGGTAT TATTTGGGCA GATTCAAAAG ACGCTTCCGT 241 TCTGAACCTA ATCTAAAACC ACTAACTTCC CGCATTGTTG ATCTTACTCG CAGAAGGCAA 301 CTCCACCAGA TTTTTGTGGA AATTGAGATT GCAAAGAAGC GACATGGACA GTTGAACACC 361 ATTGTTATGA ATGCAGTGAT GCAGGCTTGT GTTCATTGTG CTGATATAGA ATCTGCCTTG 421 AGGCTCTTTG ATGAAATGTC TGGCCCAGAG GGTTGTGGTG TTGATAATAT CACTTACGCT 481 ACACTTTTAA AGGGTTTGGG TGATGCCCGA AGAATTGATC AAGCATTTCA ATTACTTGAG 541 GCTGTTGAAC AAGGTACTGC TGCTGGAAGT CCAAAACTTT CACCTCCCCT TGTTAGAGGT 601 CTGCTGAATT CTCTAATTGA AGCAGGGGAT CTACGCCGTG CTAATGGTCT TCTTGCACGT 661 TATGGTTTTG TATTTCACGA GGGCGGATAT CCATCCATCT TGGTCTAC Predicted gene structure (within gDNA segment 20103 to 25005): Exon 1 20703 21011 ( 309 n); cDNA 1 309 ( 309 n); score: 1.000 Intron 1 21012 21948 ( 937 n); Pd: 0.431 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 2 21949 22131 ( 183 n); cDNA 310 492 ( 183 n); score: 1.000 Intron 2 22132 22241 ( 110 n); Pd: 0.986 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 22242 22374 ( 133 n); cDNA 493 625 ( 133 n); score: 1.000 Intron 3 22375 24312 (1938 n); Pd: 0.941 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 4 24313 24395 ( 83 n); cDNA 626 708 ( 83 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E548564+ 1.000 708 1.000 C PGS_C08HBa0037O11.1+_SGN-E548564+ (20703 21011,21949 22131,22242 22374,24313 24395) Alignment (genomic DNA sequence = upper lines): CTGCCGCCGA TCAAATGTGG AGCTATGGTT AATCTGCCAA TGGACCAAAT GCATCACTTT 20762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCGCCGA TCAAATGTGG AGCTATGGTT AATCTGCCAA TGGACCAAAT GCATCACTTT 60 CAAGCCTTAC CTGCTCATAT TCATGGAGAT ATGTCAGTGC TTCTGTTTCC TTTTAGAAAA 20822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCCTTAC CTGCTCATAT TCATGGAGAT ATGTCAGTGC TTCTGTTTCC TTTTAGAAAA 120 TGCTGGCAGC AACAGAAACA AAACCATTTT CAGAGACCGG CATTGTCTTC TTCTTCCTCG 20882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGGCAGC AACAGAAACA AAACCATTTT CAGAGACCGG CATTGTCTTC TTCTTCCTCG 180 CCGGTCTCCG GCTGTCAGCC CAGAAGGTAT TATTTGGGCA GATTCAAAAG ACGCTTCCGT 20942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTCTCCG GCTGTCAGCC CAGAAGGTAT TATTTGGGCA GATTCAAAAG ACGCTTCCGT 240 TCTGAACCTA ATCTAAAACC ACTAACTTCC CGCATTGTTG ATCTTACTCG CAGAAGGCAA 21002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAACCTA ATCTAAAACC ACTAACTTCC CGCATTGTTG ATCTTACTCG CAGAAGGCAA 300 CTCCACCAGG TCTCTCTCAG GGTTATTTTC CCTCAAGTTC TGTTCCTACT GCTAAATTAG 21062 ||||||||| CTCCACCAG. .......... .......... .......... .......... .......... 309 AATTTTTTTT TAATCGAGAC TGCTTAGTAA TGTATTATTA GTTTCAAAAC AAGGAACATA 21122 .......... .......... .......... .......... .......... .......... 309 AATTAACTGA AAATGTCTAG GCATACTACA TCATTGATTT AAATTATTGA ACTGAAACAT 21182 .......... .......... .......... .......... .......... .......... 309 AACACATGAG TTATGGTCAA AACATTTGCT TCTTTCGAAG AGTGGATATA CGGCTAGTCC 21242 .......... .......... .......... .......... .......... .......... 309 AAGTACTAAG AAGAAATGCT TTCACAGTAC AAGCACTTCT TAATGCTAGA ATTGGTAAGA 21302 .......... .......... .......... .......... .......... .......... 309 CTTATCATTG TTATGTTGCA GTTCTACCCT GTTGTAGAAA CTTTGACAAG CAGCCTACAA 21362 .......... .......... .......... .......... .......... .......... 309 CACGATAACA TCAGCTACTG TTGTTTTCTT CTCTTGTGGT TATGCCTATT TTTGTATTAC 21422 .......... .......... .......... .......... .......... .......... 309 ATACTATCTT CTACTACTCC AAACATTCCT CAAGGTGGCA GATTGTTGTG TGACACTCAG 21482 .......... .......... .......... .......... .......... .......... 309 CTGATAATTT GGACAGTTAT GTTTGAGATG TCCCAAGGCA TTTGAAAGAT TTACTGGATA 21542 .......... .......... .......... .......... .......... .......... 309 GATGTCCATT ACATAAAACA TGCATGAAGA TCTATCAAAA GTTAAAACTT TTTCCCATAA 21602 .......... .......... .......... .......... .......... .......... 309 TCAACTTAGA AGGTTTAGAA CCTGCGTTAC ACTAAGGAGT TCTAACCTGT CTTTTAAAAT 21662 .......... .......... .......... .......... .......... .......... 309 GTTGGCGGTC TTAGCATCTT TACCTCAACT TTTTACTCAG ACTTAAATCT ACCTGAACCA 21722 .......... .......... .......... .......... .......... .......... 309 TAATCTTGGG TTTAAATTAT TATATTTTTG TAGCTTGAAT GTTTGAATTT CTTTTATGAA 21782 .......... .......... .......... .......... .......... .......... 309 GCATAAGTAG TGTCTCCTTG CTTTGTAAGC ACCTTCATGT ACTGACAAGT CACCAAGAAA 21842 .......... .......... .......... .......... .......... .......... 309 ATGTAAAACA ATGCAGTAGT ACAAAACTAA ATTGAACTGT TATTTTTGAA ATGCTTAATT 21902 .......... .......... .......... .......... .......... .......... 309 TTTTTACAAC TGGTTTTAAC TCCCAAAATT GCTCATGGAT CTCTAGATTT TTGTGGAAAT 21962 |||| |||||||||| .......... .......... .......... .......... ......ATTT TTGTGGAAAT 323 TGAGATTGCA AAGAAGCGAC ATGGACAGTT GAACACCATT GTTATGAATG CAGTGATGCA 22022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGATTGCA AAGAAGCGAC ATGGACAGTT GAACACCATT GTTATGAATG CAGTGATGCA 383 GGCTTGTGTT CATTGTGCTG ATATAGAATC TGCCTTGAGG CTCTTTGATG AAATGTCTGG 22082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTGTGTT CATTGTGCTG ATATAGAATC TGCCTTGAGG CTCTTTGATG AAATGTCTGG 443 CCCAGAGGGT TGTGGTGTTG ATAATATCAC TTACGCTACA CTTTTAAAGG TATTTGTAAC 22142 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCCAGAGGGT TGTGGTGTTG ATAATATCAC TTACGCTACA CTTTTAAAG. .......... 492 ACTGTGGTTT CCATATAATT ATTTTAAAAG TTGTAGCCTG TAATAGTGGA AATTGAAGTA 22202 .......... .......... .......... .......... .......... .......... 492 CTCAACATAT CTATGCCTGT TAAATATGTT TCCTGGTAGG GTTTGGGTGA TGCCCGAAGA 22262 | |||||||||| |||||||||| .......... .......... .......... .........G GTTTGGGTGA TGCCCGAAGA 513 ATTGATCAAG CATTTCAATT ACTTGAGGCT GTTGAACAAG GTACTGCTGC TGGAAGTCCA 22322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATCAAG CATTTCAATT ACTTGAGGCT GTTGAACAAG GTACTGCTGC TGGAAGTCCA 573 AAACTTTCAC CTCCCCTTGT TAGAGGTCTG CTGAATTCTC TAATTGAAGC AGGTTAGTTT 22382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AAACTTTCAC CTCCCCTTGT TAGAGGTCTG CTGAATTCTC TAATTGAAGC AG........ 625 GTTCTTGGAG TAAATGGAAT TCAGGACATG CTTTTATTGT TCTCCGAGAT TATATTGCTG 22442 .......... .......... .......... .......... .......... .......... 625 GTGAAATATT TGGAGATGTA GGAGTAGGAT TAACCCCTTA TCGATGTTTG ATATCACTAC 22502 .......... .......... .......... .......... .......... .......... 625 TTAAAGAAGG ATGGTAACTC CACGACATCT GAGCTATACA AGTGTAGAGG ATTTGTATTA 22562 .......... .......... .......... .......... .......... .......... 625 CCACATCATA TGTTTCTGAA TCAATGTTTT TCTTTTTCTG GTTAATTGTT AGATTTTCCT 22622 .......... .......... .......... .......... .......... .......... 625 AATTAAAGCT ATCAAGTTCA AGTGACATTG TGATTGGAGT TCTTTCGGTA AGTAAGTGAA 22682 .......... .......... .......... .......... .......... .......... 625 CATATGAATA CTGCTGTCCT AAAGATGCAC CGGTCCATAG ATGTGGAACT ATGGCAAGTG 22742 .......... .......... .......... .......... .......... .......... 625 AAGGTGTTAA GAGATGGGTA AACCAAAAAT TACACAGAAG GAAGTGATCT AGAAAGACCT 22802 .......... .......... .......... .......... .......... .......... 625 ACAAATGCTT GGTATCAATA CAAACTTAGC TAAAGATTGA GCATGATGGA AGTAAAAGAT 22862 .......... .......... .......... .......... .......... .......... 625 CCATATAGGT GATAACTACT AGTCGAGGAT AGGTTTTAGA CTTGTTAGAG AACTTCTAAT 22922 .......... .......... .......... .......... .......... .......... 625 AATAATATTG TTAGAGAATT CATATTTTTT TAAAAATTAT TCTTGATAAA AATTATTACT 22982 .......... .......... .......... .......... .......... .......... 625 ATTATTTATG TGCATATAAC TTATTTTTCA CTTCTATTTT ATTTAGTTTG ATGATGATAT 23042 .......... .......... .......... .......... .......... .......... 625 GTCATGAGCT TAAATGAAAA ATAGGGATTC ATATAGCCGG CCTCAACTTG GTGGAAAATC 23102 .......... .......... .......... .......... .......... .......... 625 AGTTAAGTGA TTTCACTGAT GATATCAAGG TCATGAGGTG TAGTTGTGGT TGTTGTAAGT 23162 .......... .......... .......... .......... .......... .......... 625 AAGTCTAACA TTTTGTTGAA ATATAGAAGC ACACAAATTG TGCTGTAGCT TACATCAGGA 23222 .......... .......... .......... .......... .......... .......... 625 TCCTTACAAA AAGAAATAGG TTTTGTATCT AGGAACCTTA CAACAAAACT TCAGTTCCTA 23282 .......... .......... .......... .......... .......... .......... 625 TCTACTCTAA ACTGAGGGTA AACTAAGAAA ATTTTAGAAA GCTACATATA CAATATACAT 23342 .......... .......... .......... .......... .......... .......... 625 ACTGCATTTT GCACCAAAAT TTTAATCTTC TAAAATATGT GGAAGATTTG GGGTCTTGAA 23402 .......... .......... .......... .......... .......... .......... 625 AGTTGGTCTT CTTATCTCTG GATCCTTGTG CAAATTCGTA AATAAATTGT AGGATATGCT 23462 .......... .......... .......... .......... .......... .......... 625 CTTTGACTTC TAGGGCACCT TTTTCCGTTT ATAGTTTGTC AATGTGGTTA TGTCTTCCGA 23522 .......... .......... .......... .......... .......... .......... 625 GGATATTGCC CATCTTTTGG AAGAAACTAA TTTTTATTAC ATTACTTTAG TCACAGACAC 23582 .......... .......... .......... .......... .......... .......... 625 TTAGATTTTT TTGTCTTGGA GATTTCTTCA TGTTCTTCCA CCTTGTGTAA GTCCATCTCT 23642 .......... .......... .......... .......... .......... .......... 625 AGCCCTGCAT CCTTGTTCTT TGATAGAATT CTTCTTCCTT CAACTCTCTA CTTTCTGCCA 23702 .......... .......... .......... .......... .......... .......... 625 GCCCATTTAA ATCCAGTAAC TCTTGAAGGA TGTCATTTTT CTTTTTTGAT GATTCCCTAA 23762 .......... .......... .......... .......... .......... .......... 625 GGTCTTGTTA TTCCATTCCG TTGATTTACT TTGCTGACCT TTTGGCCGAA CTGAAATCAG 23822 .......... .......... .......... .......... .......... .......... 625 GTCTGTCATT TATTTTTGGA ATTGTTTAGT ATCTTTACAT CAGCTATACA TAATTGTTTT 23882 .......... .......... .......... .......... .......... .......... 625 TGGTGTAAAC AATTATGTAG ATGTAGATCA AATCATAGAA CTGATTGGAA GCTTTGTAGG 23942 .......... .......... .......... .......... .......... .......... 625 TTTTGTTTGG GTCATGGTTG TAACCCTTTT TAATGTCGGC CAGCATTTGA ATACTACTTA 24002 .......... .......... .......... .......... .......... .......... 625 CCAATTGTTA AATAAATAAA ATCTGAGATA GTTTTTCTAG CACTAGCCTC ATTATAGAAT 24062 .......... .......... .......... .......... .......... .......... 625 CAAGTATCAT GCGAGGGCTT TTCCAGAATG AGATGACTAT GAGTTTGTGG AAGAAAATAA 24122 .......... .......... .......... .......... .......... .......... 625 AACAAGAGTT TGACTCTTTA TCATTCTTTA CTTTCTCTAC TAACTTGTCA TTTTATTTCC 24182 .......... .......... .......... .......... .......... .......... 625 CTTCTTTTTT CTTGAATGCT TTCCACACAA ATGCCAGGTG GTGCTTAATT ATTGGATATA 24242 .......... .......... .......... .......... .......... .......... 625 GTTGTTTGTG TCAAGATTTA TGTCTTGGCT TACTTAATAT ACCTCCTTTA CTTCTGCCTT 24302 .......... .......... .......... .......... .......... .......... 625 TCTAGTGCAG GGGATCTACG CCGTGCTAAT GGTCTTCTTG CACGTTATGG TTTTGTATTT 24362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GGGATCTACG CCGTGCTAAT GGTCTTCTTG CACGTTATGG TTTTGTATTT 675 CACGAGGGCG GATATCCATC CATCTTGGTC TAC 24395 |||||||||| |||||||||| |||||||||| ||| CACGAGGGCG GATATCCATC CATCTTGGTC TAC 708 hqPGS_C08HBa0037O11.1+_SGN-E548564+ (20703 21011,21949 22131,22242 22374,24313 24395) ******************************************************************************** EST sequence 47 +strand 437 n (File: SGN-E296714+) 1 ATCAAATGTG GAGCTATGGT TAATCTGCCA ATGGACCAAA TGCATCACTT TCAAGCCTTA 61 CCTGCTCATA TTCATGGAGA TATGTCAGTG CTTCTGTTTC CTTTTAGAAA ATGCTGGCAG 121 CAACAGAAAC AAAACCATTT TCAGAGACCG GCATTGTCTT CTTCTTCCTC GCCGGTCTCC 181 GGCTGTCAGC CCAGAAGGTA TTATTTGGGC AGATTCAAAA GACGCTTCCG TTCTGAACCT 241 AATCTAAAAC CACTAACTTC CCGCATTGTT GATCTTACTC GCAGAAGGCA ACTCCACCAG 301 ATTTTTGTGG AAATTGAGAT TGCAAAGAAG CGACATGGAC AGTTGAACAC CATTGTTATG 361 AATGCAGTGA TGCAGGCTTG TGTTCATTGT GCTGATATAG AATCTGCCTT GAGGCTCTTT 421 GATGAAATGT CTGGCCC Predicted gene structure (within gDNA segment 20112 to 22695): Exon 1 20712 21011 ( 300 n); cDNA 1 300 ( 300 n); score: 1.000 Intron 1 21012 21948 ( 937 n); Pd: 0.431 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 2 21949 22085 ( 137 n); cDNA 301 437 ( 137 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E296714+ 1.000 437 1.000 C PGS_C08HBa0037O11.1+_SGN-E296714+ (20712 21011,21949 22085) Alignment (genomic DNA sequence = upper lines): ATCAAATGTG GAGCTATGGT TAATCTGCCA ATGGACCAAA TGCATCACTT TCAAGCCTTA 20771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAATGTG GAGCTATGGT TAATCTGCCA ATGGACCAAA TGCATCACTT TCAAGCCTTA 60 CCTGCTCATA TTCATGGAGA TATGTCAGTG CTTCTGTTTC CTTTTAGAAA ATGCTGGCAG 20831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCTCATA TTCATGGAGA TATGTCAGTG CTTCTGTTTC CTTTTAGAAA ATGCTGGCAG 120 CAACAGAAAC AAAACCATTT TCAGAGACCG GCATTGTCTT CTTCTTCCTC GCCGGTCTCC 20891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAGAAAC AAAACCATTT TCAGAGACCG GCATTGTCTT CTTCTTCCTC GCCGGTCTCC 180 GGCTGTCAGC CCAGAAGGTA TTATTTGGGC AGATTCAAAA GACGCTTCCG TTCTGAACCT 20951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGTCAGC CCAGAAGGTA TTATTTGGGC AGATTCAAAA GACGCTTCCG TTCTGAACCT 240 AATCTAAAAC CACTAACTTC CCGCATTGTT GATCTTACTC GCAGAAGGCA ACTCCACCAG 21011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTAAAAC CACTAACTTC CCGCATTGTT GATCTTACTC GCAGAAGGCA ACTCCACCAG 300 GTCTCTCTCA GGGTTATTTT CCCTCAAGTT CTGTTCCTAC TGCTAAATTA GAATTTTTTT 21071 .......... .......... .......... .......... .......... .......... 300 TTAATCGAGA CTGCTTAGTA ATGTATTATT AGTTTCAAAA CAAGGAACAT AAATTAACTG 21131 .......... .......... .......... .......... .......... .......... 300 AAAATGTCTA GGCATACTAC ATCATTGATT TAAATTATTG AACTGAAACA TAACACATGA 21191 .......... .......... .......... .......... .......... .......... 300 GTTATGGTCA AAACATTTGC TTCTTTCGAA GAGTGGATAT ACGGCTAGTC CAAGTACTAA 21251 .......... .......... .......... .......... .......... .......... 300 GAAGAAATGC TTTCACAGTA CAAGCACTTC TTAATGCTAG AATTGGTAAG ACTTATCATT 21311 .......... .......... .......... .......... .......... .......... 300 GTTATGTTGC AGTTCTACCC TGTTGTAGAA ACTTTGACAA GCAGCCTACA ACACGATAAC 21371 .......... .......... .......... .......... .......... .......... 300 ATCAGCTACT GTTGTTTTCT TCTCTTGTGG TTATGCCTAT TTTTGTATTA CATACTATCT 21431 .......... .......... .......... .......... .......... .......... 300 TCTACTACTC CAAACATTCC TCAAGGTGGC AGATTGTTGT GTGACACTCA GCTGATAATT 21491 .......... .......... .......... .......... .......... .......... 300 TGGACAGTTA TGTTTGAGAT GTCCCAAGGC ATTTGAAAGA TTTACTGGAT AGATGTCCAT 21551 .......... .......... .......... .......... .......... .......... 300 TACATAAAAC ATGCATGAAG ATCTATCAAA AGTTAAAACT TTTTCCCATA ATCAACTTAG 21611 .......... .......... .......... .......... .......... .......... 300 AAGGTTTAGA ACCTGCGTTA CACTAAGGAG TTCTAACCTG TCTTTTAAAA TGTTGGCGGT 21671 .......... .......... .......... .......... .......... .......... 300 CTTAGCATCT TTACCTCAAC TTTTTACTCA GACTTAAATC TACCTGAACC ATAATCTTGG 21731 .......... .......... .......... .......... .......... .......... 300 GTTTAAATTA TTATATTTTT GTAGCTTGAA TGTTTGAATT TCTTTTATGA AGCATAAGTA 21791 .......... .......... .......... .......... .......... .......... 300 GTGTCTCCTT GCTTTGTAAG CACCTTCATG TACTGACAAG TCACCAAGAA AATGTAAAAC 21851 .......... .......... .......... .......... .......... .......... 300 AATGCAGTAG TACAAAACTA AATTGAACTG TTATTTTTGA AATGCTTAAT TTTTTTACAA 21911 .......... .......... .......... .......... .......... .......... 300 CTGGTTTTAA CTCCCAAAAT TGCTCATGGA TCTCTAGATT TTTGTGGAAA TTGAGATTGC 21971 ||| |||||||||| |||||||||| .......... .......... .......... .......ATT TTTGTGGAAA TTGAGATTGC 323 AAAGAAGCGA CATGGACAGT TGAACACCAT TGTTATGAAT GCAGTGATGC AGGCTTGTGT 22031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAGCGA CATGGACAGT TGAACACCAT TGTTATGAAT GCAGTGATGC AGGCTTGTGT 383 TCATTGTGCT GATATAGAAT CTGCCTTGAG GCTCTTTGAT GAAATGTCTG GCCC 22085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TCATTGTGCT GATATAGAAT CTGCCTTGAG GCTCTTTGAT GAAATGTCTG GCCC 437 hqPGS_C08HBa0037O11.1+_SGN-E296714+ (20712 21011,21949 22085) ******************************************************************************** EST sequence 21 +strand 676 n (File: SGN-E316129+) 1 ACACAGGTTG TCCTGAGGTA GCGCTACGTT TGCATGATGA AATACTAAGA CATGGACTGA 61 ACCTTGACAA GCTCACATAT AATACACTAA TCCTAGCATG TGTGGAGTCT GAAAAGTTGG 121 ATGTTGCAAT GCAGTTCTTT GAGGGCATGA AGGACAGAGC ACAAACTGCT GCTGATGATG 181 ACATTTTACC AGATGTAGTT ACCTACACTA CGTTGCTGAA GGGTTTTGGT CATGCCCAGG 241 ATCTCATTTC AGTTCAAAAG ATTTTCATAG AAATGAAATT ATCCAACAAC TTGCATATTG 301 ATCGAGTTGC TTACACTGCA ATCATTGATG CCTTCTTGAA TTGTGGGACA ATAAAAGGCG 361 CTCTGACTGT GTATGGGGAA CTACTAAAGA AAGCTGGAGA AGATTCTAGC TTGAGGCCAA 421 AGCCTCATCT TTTCCTTGCT CTGATGCGTG CTTTTGCTGT TAGAGGAGAG TATGAAATGG 481 TTAAAATACT GCATGGACGC ATGTGGCTAG ATTCATCTGG AACAATCACC TCTAAAGTTA 541 ATGAAGAGGC TGATCATCTC CTAATGGAGG CAGCATTGAG CAATGGACAG TTGGATTTGG 601 CCCTACAATA CATGAAAGGC AATGTTGAGA AATGGAAGCA ATACCATGGG CTAGTCGGGG 661 TGGAATGGGT GCTCTG Predicted gene structure (within gDNA segment 23937 to 30915): Exon 1 24537 24688 ( 152 n); cDNA 1 152 ( 152 n); score: 1.000 Intron 1 24689 24789 ( 101 n); Pd: 0.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 24790 24858 ( 69 n); cDNA 153 221 ( 69 n); score: 1.000 Intron 2 24859 25227 ( 369 n); Pd: 0.948 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 25228 25363 ( 136 n); cDNA 222 357 ( 136 n); score: 1.000 Intron 3 25364 28259 (2896 n); Pd: 0.970 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 4 28260 28492 ( 233 n); cDNA 358 590 ( 233 n); score: 1.000 Intron 4 28493 30146 (1654 n); Pd: 0.994 (s: 1.00), Pa: 0.991 (s: 0.98) Exon 5 30147 30224 ( 78 n); cDNA 591 667 ( 77 n); score: 0.987 MATCH C08HBa0037O11.1+ SGN-E316129+ 0.999 668 0.988 C PGS_C08HBa0037O11.1+_SGN-E316129+ (24537 24688,24790 24858,25228 25363,28260 28492,30147 30224) Alignment (genomic DNA sequence = upper lines): ACACAGGTTG TCCTGAGGTA GCGCTACGTT TGCATGATGA AATACTAAGA CATGGACTGA 24596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAGGTTG TCCTGAGGTA GCGCTACGTT TGCATGATGA AATACTAAGA CATGGACTGA 60 ACCTTGACAA GCTCACATAT AATACACTAA TCCTAGCATG TGTGGAGTCT GAAAAGTTGG 24656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTGACAA GCTCACATAT AATACACTAA TCCTAGCATG TGTGGAGTCT GAAAAGTTGG 120 ATGTTGCAAT GCAGTTCTTT GAGGGCATGA AGGTTTCATC TCTGAACTCG AAAGGCCAGT 24716 |||||||||| |||||||||| |||||||||| || ATGTTGCAAT GCAGTTCTTT GAGGGCATGA AG........ .......... .......... 152 TTAGAGCTCA TTATTTGCTC AGATGATGTT GCAAACATTG TTGTAATCTG AACTGTATAT 24776 .......... .......... .......... .......... .......... .......... 152 TTGAATGGTG CAGGACAGAG CACAAACTGC TGCTGATGAT GACATTTTAC CAGATGTAGT 24836 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GACAGAG CACAAACTGC TGCTGATGAT GACATTTTAC CAGATGTAGT 199 TACCTACACT ACGTTGCTGA AGGTGCGTGT GCATGATGCA TTTCGTATAC AGTTAAAAAT 24896 |||||||||| |||||||||| || TACCTACACT ACGTTGCTGA AG........ .......... .......... .......... 221 AATCTTTTGT AACCTGTACT GAGATAAATA GGTCTCAGAT AGATTGAGCA GTAGTTGAGA 24956 .......... .......... .......... .......... .......... .......... 221 GTATGAGATG TTGTGCTATT GATCTTAATT CCTTTTTATT CTTACGAAGT TATATATCTT 25016 .......... .......... .......... .......... .......... .......... 221 AATGTATACC ATCTTTTCCA TCAAAATTCA CAGTGTAGTA ATTCTTTCAC CAGATAAGTA 25076 .......... .......... .......... .......... .......... .......... 221 TATGGTTTTA ACGAAAGAGT ATATGGTTTT AACGAAAGAG ACTCAATTGA AACTTTGCCA 25136 .......... .......... .......... .......... .......... .......... 221 GAAACCTGTT CGCTCTTACA TTTGATATGA TGAATTAGGT TCTCTACTGT CATTTCTTGT 25196 .......... .......... .......... .......... .......... .......... 221 TAGTGTTTAG AATTTCTGCT CCTTTTTGCA GGGTTTTGGT CATGCCCAGG ATCTCATTTC 25256 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGTTTTGGT CATGCCCAGG ATCTCATTTC 250 AGTTCAAAAG ATTTTCATAG AAATGAAATT ATCCAACAAC TTGCATATTG ATCGAGTTGC 25316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCAAAAG ATTTTCATAG AAATGAAATT ATCCAACAAC TTGCATATTG ATCGAGTTGC 310 TTACACTGCA ATCATTGATG CCTTCTTGAA TTGTGGGACA ATAAAAGGTA TTCTTTATGC 25376 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTACACTGCA ATCATTGATG CCTTCTTGAA TTGTGGGACA ATAAAAG... .......... 357 AGATATTACT AAACTTCTAC AACTCAGGGT TATGAGGTAT ATTCAAAAAA CTCATGTCAA 25436 .......... .......... .......... .......... .......... .......... 357 GTCCAAATAA TAATTAACAT ATGGTGGTTA TCACTGGTGA AACTGAAGTA ACATTTAACA 25496 .......... .......... .......... .......... .......... .......... 357 CAACATTGTC CATATTGAAT CTTAGCATCT ACAGATAAGG GTCTAAAAGG CATGCATACT 25556 .......... .......... .......... .......... .......... .......... 357 AATTGCTTCC ACAAAAAATT TACTATGTAT GTCATGTGAA TTCTTCTATC TATGTGCAAG 25616 .......... .......... .......... .......... .......... .......... 357 TATATCAGCT TTCTTTGAGT TTCCTCCACT TACAATTTGA TAAACTGATT CAGGTCACAA 25676 .......... .......... .......... .......... .......... .......... 357 AGACCAAAAT GTTCAGTTTG GAGATCAACT TTGAAAGTTA ATTGCTAAGT CTTTTTGAAA 25736 .......... .......... .......... .......... .......... .......... 357 CAAAATTTTT TGATTTAGAA GTGACATATA AACATACCAC CGGGGACTAT ATGCCAATGT 25796 .......... .......... .......... .......... .......... .......... 357 TGGGATAATT GTGACATTTG GTGAACATCC TTCTTAGAAA TTCCCTAATT CGCCTGAAAT 25856 .......... .......... .......... .......... .......... .......... 357 TAGTTTTACC AGAGTAGTAT GCAATAATAT GGACATGAAT AAGGCGGAAT GGTTACAGAA 25916 .......... .......... .......... .......... .......... .......... 357 ATTCCATATA ACCGACCACA ATTTTGTTGG GACAGAGTCA TCGTAGTTTT ACAGAAATCA 25976 .......... .......... .......... .......... .......... .......... 357 TGCACAGAGT TCTATTACCA CAAATTTTAG CATCGAGAAA CTTTCAAGAA CTATTTGATA 26036 .......... .......... .......... .......... .......... .......... 357 AGTTGGTGGT AGAAGAGAAA TTTGTTTGAC CTCTCGGTAG GTCCAGTAAA ATAGGAACAG 26096 .......... .......... .......... .......... .......... .......... 357 TGCCTATCCC TTAAGTCGCC TCAAATATAC ATTTCTCTAT GACAAGTGAA AAATAACAAC 26156 .......... .......... .......... .......... .......... .......... 357 ATACCCAGTA TATTCCCACA AGTGGGGTTT GGGGAGGGGG GGGGGGTGTC GCGACCTTAC 26216 .......... .......... .......... .......... .......... .......... 357 CTCTAACTTG TAGGTAGAGA GGACAAGTGA AAATACCAAG ACAGAAAATG TAGAAATACA 26276 .......... .......... .......... .......... .......... .......... 357 ACTAACAAAA GAAAGAAGAG TAGCTTTCCT ATTTGACTTT TATGAGTTTA CTCCTCCTGT 26336 .......... .......... .......... .......... .......... .......... 357 CACTGTCTTA CTGGCCAATC TTTCAGTGAT CTGTTGAGAG GAGTCCATTA TTTGAGTTCA 26396 .......... .......... .......... .......... .......... .......... 357 GTGCTTCCCT GGTCTATGTT TTAAATCTTC GAAAGTTGTT TCGCTAAAAC ATCAGTGCTT 26456 .......... .......... .......... .......... .......... .......... 357 GAAAAATGGA ACCTTTTCAT CATTGTTTTT TCCTATTTGA TTTTCTGACA ATCAGACCAC 26516 .......... .......... .......... .......... .......... .......... 357 ATTTACGTTT CAGAGTTTCT AAAAGTTAAA CCCTGATAGG CTTAGTGGTT TAGAATTCAG 26576 .......... .......... .......... .......... .......... .......... 357 ATCTGTGTAT CAGTATTTAA AAGTTATATA GTCAAATAAT GAGCTTTCAG TTTAAGAATC 26636 .......... .......... .......... .......... .......... .......... 357 ATGGGTTTTA AAGAAAGTAG CTAAAAGGCT GTTAGCTGGC AGATCAGGGA ACATGAAATG 26696 .......... .......... .......... .......... .......... .......... 357 GGATCTTAAG AACCTTCACA AGAAAGGTTA GACAAACTCC AAATGTTCCA TAATGTTAAC 26756 .......... .......... .......... .......... .......... .......... 357 TTCATATAAC ATGTCACTGG AAAATGCAGA TAGACAATAG ATCTACTGTT TATTTGGTGA 26816 .......... .......... .......... .......... .......... .......... 357 TATCAGTAAG CGATTTCACA TTTTTAATTC ATTCAGTATC GAGAAAAAGA ATTGTGGTAA 26876 .......... .......... .......... .......... .......... .......... 357 GGTTTTGATA AATATGTAAA ACTTGCTAGA GTGCAGAAAA CATTGTTAAG TTTTATTGGC 26936 .......... .......... .......... .......... .......... .......... 357 AAGATTCTTT CTACAATGGT TAACTCTGTG ACTAGTCTAA AGCATTTATG CGAGTGAGGC 26996 .......... .......... .......... .......... .......... .......... 357 TTCTGTCCGC ATCAAGATTG TACTTAAGAA CAAAACTGTG AGTTCAATTG GGATCTGGGC 27056 .......... .......... .......... .......... .......... .......... 357 TGAAATGGAG AGTGTCACCT CTCACACAAC AATACATCAG ACATTTTTCT TGATCTAGTA 27116 .......... .......... .......... .......... .......... .......... 357 ATAACAACAA TATATCAGAC ATGTACATGG TGCTTGTTGC TAGGCCTCCT GGCTGTCACA 27176 .......... .......... .......... .......... .......... .......... 357 GGTCATCCAT TACTATATAC AGAAGAAGGT ATAAATAAGT CTTGACCACA GTTCTTTCCA 27236 .......... .......... .......... .......... .......... .......... 357 TTGGCAGGCT GATATCTGGG GACTGTCCCA CATAAATAAG TTAACTGAAG TGTTAGTAAC 27296 .......... .......... .......... .......... .......... .......... 357 ACCTTCATAA GAGTGAGGAG AATGTCAGTT CACTGAATTG CCTTATATAA TGGAAAAACT 27356 .......... .......... .......... .......... .......... .......... 357 AACAATAGCG GGCAACTCTG GTAATACCTC TCATATTGGA TATAGATGCA GTCCATTTAA 27416 .......... .......... .......... .......... .......... .......... 357 ATCTATCATC ATTTATAGAA TTGAGTGTTG TCCATTTTGA AAGAACTAAT AATTGCTTAG 27476 .......... .......... .......... .......... .......... .......... 357 GTATTTATTG TTATTGGTAT TATGGGTTCA TGTAAATCAA TTCTGCAATA TGTGCCAAAT 27536 .......... .......... .......... .......... .......... .......... 357 GCCTTTTTTT TTCTAGCGCA GGAAAGAAAA AACCCATAGA CTAATGACTA TACCTCTAGA 27596 .......... .......... .......... .......... .......... .......... 357 CTAATGGGAA GTATTCCTAA ATTCCTATAA CTCTAGACTA ATGACTTTTT GTCAGCATTA 27656 .......... .......... .......... .......... .......... .......... 357 ATTGGTTTAT GTGTTCAGAT TACCAAACAG ATTGATGCAC AAACTTACTC TGGCGGAGTG 27716 .......... .......... .......... .......... .......... .......... 357 AATTAATCTC TTAATGAAGT ATGTTTTCTG TAGTATGAGT ATGCAGCATA TCCATCTCCT 27776 .......... .......... .......... .......... .......... .......... 357 ATGAAGTTGA CATTTTTGTG GGAATTCATA CTTCAATGCA TAAATCAATG TGCACTGTCG 27836 .......... .......... .......... .......... .......... .......... 357 TGTTGTTTAA TTCTCTTCCA AGTAGCTTAT ACGGTATTGT TTTTGCTGAT AAGGCTTAAA 27896 .......... .......... .......... .......... .......... .......... 357 TTCCTCCTTG AATGACTGGA CCATCAAGTT GTAAATCCCT TGCTTAATTT ATCCGTACTC 27956 .......... .......... .......... .......... .......... .......... 357 ACTATCCTGA ATCTCACTCA TGAATATCCG TGTTCTCCTT TGTTTCCTGC ATTATAGTTA 28016 .......... .......... .......... .......... .......... .......... 357 TCCATTTTAT ATTTTCCGAT GCATGGACGA CTTCTACAGC GCAACTTGAT CAATAATTTC 28076 .......... .......... .......... .......... .......... .......... 357 TCTCGTACCA TCAAAATTTT GCTTTCGTCA TTATAATGTG CAATTTTAAC TAATTAAAGA 28136 .......... .......... .......... .......... .......... .......... 357 AAAGAGTATG TAAGTTATAA CTTATAACTG TGTTGATTAT TCTCGCACTG TAATTGTGTT 28196 .......... .......... .......... .......... .......... .......... 357 GATGATTTTT CTGCTACCTC CATTGTCACT TTGCATATTA AATATTTGTG CACAATATGA 28256 .......... .......... .......... .......... .......... .......... 357 TAGGCGCTCT GACTGTGTAT GGGGAACTAC TAAAGAAAGC TGGAGAAGAT TCTAGCTTGA 28316 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GCGCTCT GACTGTGTAT GGGGAACTAC TAAAGAAAGC TGGAGAAGAT TCTAGCTTGA 414 GGCCAAAGCC TCATCTTTTC CTTGCTCTGA TGCGTGCTTT TGCTGTTAGA GGAGAGTATG 28376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAAAGCC TCATCTTTTC CTTGCTCTGA TGCGTGCTTT TGCTGTTAGA GGAGAGTATG 474 AAATGGTTAA AATACTGCAT GGACGCATGT GGCTAGATTC ATCTGGAACA ATCACCTCTA 28436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTTAA AATACTGCAT GGACGCATGT GGCTAGATTC ATCTGGAACA ATCACCTCTA 534 AAGTTAATGA AGAGGCTGAT CATCTCCTAA TGGAGGCAGC ATTGAGCAAT GGACAGGTAC 28496 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAGTTAATGA AGAGGCTGAT CATCTCCTAA TGGAGGCAGC ATTGAGCAAT GGACAG.... 590 TTTTTGCTTA CACTTGGACC ACGGTGGTAG TCCTAGTACT AAATACTAGA TACTACATAA 28556 .......... .......... .......... .......... .......... .......... 590 TCCGGCCAGT CACGAGTGAC ATAATATCCT TATCTGCTTG TACACGGATG ACTGCTTCAT 28616 .......... .......... .......... .......... .......... .......... 590 TGAAGTAGCT TTGCCTAACA CCTTAGAAGT GCTACTTGCT CGCCTAAGTG ACCACTTTCT 28676 .......... .......... .......... .......... .......... .......... 590 AACTGCTTTT CACTCCACTG GATGATGGTC TTCCTTTAAT GTTTCCAAGC TAACCATAAT 28736 .......... .......... .......... .......... .......... .......... 590 ACATTAGATA GGTGAAGCAG TCAATAGCAG TTTGTCCCAG TGTTGTCAAA AGCTCGTTTA 28796 .......... .......... .......... .......... .......... .......... 590 AGGTGCCATA AGTCTTGAAA CTCAGCAGTA GAAGCAGTAC AAGGGGGTAT CTGCAAGCAA 28856 .......... .......... .......... .......... .......... .......... 590 TCTCTGTGAC GGAGAAAGCA AGGGAGGAAA ACTCTAACGA AACACTGGGA ATTGAAAGCA 28916 .......... .......... .......... .......... .......... .......... 590 GGATCTCTGA TTCTGGCCAA AAATCAATGA TTCCGGCAGA AAATCTGGGA GGGATTATCC 28976 .......... .......... .......... .......... .......... .......... 590 TCCTTTCACC TCCACAAAAT TCGATTTCTC CAATTTATTT TACCTAGTTT ACAATTGATA 29036 .......... .......... .......... .......... .......... .......... 590 AAGTAATTTT GTCCACAGCA CTTAGTGTAA CCTCTTTTCA TAAATCAAGA ACAATGTCAA 29096 .......... .......... .......... .......... .......... .......... 590 TGATTTCCAC GAATGTGGAA CATATATAAC AGTCCAGTAA GATGAATTCC AGGGAAAGTG 29156 .......... .......... .......... .......... .......... .......... 590 GAACATATAT TGTTGTCTAG AGTTACTTGA GCTCTTCGTT ATGATAGTGG TAATTCCTTC 29216 .......... .......... .......... .......... .......... .......... 590 AGTATTGCAA CTTTCAAGAT AGTCTGAGAT AGCAACTAAA TAACAGTAAT TTTTTTATCC 29276 .......... .......... .......... .......... .......... .......... 590 ATCTTCTTTC TGGGCTAAAT CAATTTTATT AATTTTCTGA CCATCGTGAA GGCATTTTCT 29336 .......... .......... .......... .......... .......... .......... 590 AACTTAACCT GAGCAAATAG TGGATCCTAT TAACTGGTTT TCTCTTAATG TCTAAACCTG 29396 .......... .......... .......... .......... .......... .......... 590 GACTTTTCTA CTTAACTTGA CCAGATAGTG GATACTATTA TCTGGTTATT TCTCTTTATG 29456 .......... .......... .......... .......... .......... .......... 590 TCTAAACCCT TTTTGTCATT AAATAATCCA TTTTTTCTTT CAAAAATCAT GAGTGGTAAC 29516 .......... .......... .......... .......... .......... .......... 590 CACAAGCAGT TGCTATATTA AGTGTTTGCA GAGGCTCATT TATTTGTTTC GGCATGAATT 29576 .......... .......... .......... .......... .......... .......... 590 TATCATTGTT CTTCCTCTAT TATACATTCT GGTTTTTATT GAATGACTTT CCGGTTGGTT 29636 .......... .......... .......... .......... .......... .......... 590 GCTCAAACTG ACATTAAAAT ACTTTTCTTC TTTTTTGATA ATGGTAACTT TTAAAAAGTA 29696 .......... .......... .......... .......... .......... .......... 590 GTAACTTTTT AAGCCTTTTG TTTTTTGTTC AATTCTGTGA ACTGTCTCAT CTAAATGGTT 29756 .......... .......... .......... .......... .......... .......... 590 TGATCGTTGA AGAATGATCA GTTTATATAT TTTTCTTAGG TCTGCAACAT GCCTCTTGTG 29816 .......... .......... .......... .......... .......... .......... 590 ACCTATTTCT TTCCTTTGAA TCAAGCACTT GAAAATATTT TTATTGATGG GTTAGCATAG 29876 .......... .......... .......... .......... .......... .......... 590 CAGTGAGACT TGAACTTAGA ACCTCTGCTC GTAACGGTAT CAAGTTGGCT TGCAACAACC 29936 .......... .......... .......... .......... .......... .......... 590 TTGCATCAAT ATAATTTACA TATTTTTATG AGATCAGTCA TCTATTCTAC TTGTTATATC 29996 .......... .......... .......... .......... .......... .......... 590 TCATCTTTAA AGTTTAAATA TGTTTCAAAA AGAGCACTCC TCATGTCATG GATCCACCCT 30056 .......... .......... .......... .......... .......... .......... 590 ATTGTGTATA ATTTTTTTAT TATAAATACC TTATCTAATT TTTTTCCAAT GAGTATCTAT 30116 .......... .......... .......... .......... .......... .......... 590 GCTAATTGTT GCTCAACTGT CCTTTTTCAG TTGGATTTGG CCCTACAATA CATGAAAGGC 30176 |||||||||| |||||||||| |||||||||| .......... .......... .......... TTGGATTTGG CCCTACAATA CATGAAAGGC 620 AATGTTGAGA AATGGAAGCA AATACCATGG GCTAGTCGGG GTGGAATG 30224 |||||||||| ||||||||| |||||||||| |||||||||| |||||||| AATGTTGAGA AATGGAAGC- AATACCATGG GCTAGTCGGG GTGGAATG 667 hqPGS_C08HBa0037O11.1+_SGN-E316129+ (24537 24688,24790 24858,25228 25363,28260 28492,30147 30224) ******************************************************************************** EST sequence 31 +strand 756 n (File: SGN-E339946+) 1 TTTAGTCCTT GCATACTACC ACAGGGTCTA TCAGAAACAA CCTCTCTGCC TCAACAGGTG 61 TCAGTACGCG ATACTATTGA GCATATCATG GTTCCATTTA CTGAAGCACA GCCTTTGCAA 121 GCTACCCTGA AACTAAAGCA AGTGGTCATG CGTTTCTTCA GGGATTCGAC TGTTCCAGTC 181 ATAGATGATT GGGGAAGTTG TGTTGGAATA CTGCATTGTG AAGACTGCAA TGAGCTGGAT 241 GCGCCGCTTT CAGCCATGAT GAGAAGTCCA CCTCCTTCTG TGACAACCTC AACATCCATT 301 GGTCGTGTTA TTGATCTAAT GCTAGAGAAG AAGTACAAAA TGGTTATTGT TGCAAAATAC 361 GAAAATGTGC GCGGGATGTT TTACAGCTCC AGTGTAAGGG CTGTCGGAGT TTTTACGTCT 421 GAACAGCTAT ATAAGCTTGC TCCAACTTCA TCAGAGCTAA GTCTTCAATA TTCTTCTGCC 481 TGTAGAGAAC ATATTGAAAT TTGTAGGTAG TATACCTCGA GAAAGAAGTT TGCTTGAACT 541 TGCTCTTTTT CCACTGTAGA GTAGGCTATC ATTTCTTTTG GGCTGCTGAG TTTTTCGTGT 601 GTCACTTATT GCGTGCTAGA TTGCAATACT ATTGACTNTG AATGGTTTGA CTATCTGTTC 661 AACTTTATAT AATGTTGGTG CTGGGCCTGA CAAAATATTC ACAGTATATG GAAATTTTGG 721 AGTTGTTGAG ACAACTAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 30750 to 35083): Exon 1 31340 31363 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000 Intron 1 31364 32171 ( 808 n); Pd: 0.965 (s: 0), Pa: 0.000 (s: 0) Exon 2 32172 32204 ( 33 n); cDNA 25 57 ( 33 n); score: 1.000 Intron 2 32205 32322 ( 118 n); Pd: 0.976 (s: 0), Pa: 0.999 (s: 1.00) Exon 3 32323 32499 ( 177 n); cDNA 58 234 ( 177 n); score: 1.000 Intron 3 32500 33824 (1325 n); Pd: 0.995 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 33825 34338 ( 514 n); cDNA 235 747 ( 513 n); score: 0.992 MATCH C08HBa0037O11.1+ SGN-E339946+ 0.994 748 0.989 C PGS_C08HBa0037O11.1+_SGN-E339946+ (31340 31363,32172 32204,32323 32499,33825 34338) Alignment (genomic DNA sequence = upper lines): TTTAGTCCTT GCATACTACC ACAGGTACAC AATCCCATTT TGCACTCTCA GAACCATTGA 31399 |||||||||| |||||||||| |||| TTTAGTCCTT GCATACTACC ACAG...... .......... .......... .......... 24 TGTCAACTAA TTCCTTTGTT TGCCAGGCAA GCACTGTATT TCTACTTATG GTAGAGATGA 31459 .......... .......... .......... .......... .......... .......... 24 GCTTTCAGTA CTTCTTCTGT TTCAAATACT CATCAAGATG GTATTTGTAA TATTTTCTTT 31519 .......... .......... .......... .......... .......... .......... 24 TCTGCTCCGA GACTGAGTTT GTGTGGAGAA TTAGGTAAGT GCTCTAAAGA TAATAGAAGT 31579 .......... .......... .......... .......... .......... .......... 24 TGACCATGTT CAGTCTGATC GTAGTGTTGT TTGGAAAAGT GACTGAGAAG CTATGGAAAT 31639 .......... .......... .......... .......... .......... .......... 24 ATTTCATTAA CTTGAGAGGT ATCACATGGA CCTTGCCTAG AAATACTGCA GAAGTCCTAG 31699 .......... .......... .......... .......... .......... .......... 24 CATGTCGGAA TAGAGATGGA AATCAGTCTG GACACAAGGA GAGATGGAAG ATTGTCCCTG 31759 .......... .......... .......... .......... .......... .......... 24 CCTGCATCTG GTGGACAATA TGGAGGGAGG GAAATCAGAG ATGTTTGGAG AACAAGAGTA 31819 .......... .......... .......... .......... .......... .......... 24 TCCCTTTCCA AAGCATTAAA ATGAATTGCT TAGTGACCTT CTACTTTTGG TGTATTCATA 31879 .......... .......... .......... .......... .......... .......... 24 CTATTCCCAA GGATCCTGGG GACGTCACCC TATTCTTAGA TATTTTATGT GGGGGATAAG 31939 .......... .......... .......... .......... .......... .......... 24 TGTTTAGATT CTTTTTGACA AACCCTCTAT ACTTTTGATG TAATTACTAC ACGAGTTCAC 31999 .......... .......... .......... .......... .......... .......... 24 TATTGGTGTA CTTCTCTGTT TATAATACCA GTTAACTTTC CAAAAATATG TATATAAACT 32059 .......... .......... .......... .......... .......... .......... 24 ACTGGTTACT TATATTTTAC TATTTTTGCT GTCAATATTT CTCTTTTCTC ACTAGAGCTT 32119 .......... .......... .......... .......... .......... .......... 24 CTTTCACCTT GTATTCTTTA AACCTGTTTT GAAATATTTT TCTTGAGGGG AGGGTCTATC 32179 |||||||| .......... .......... .......... .......... .......... ..GGTCTATC 32 AGAAACAACC TCTCTGCCTC AACAGGTATG GATAATGTCT GCAGACATCT ACCTTCCCTA 32239 |||||||||| |||||||||| ||||| AGAAACAACC TCTCTGCCTC AACAG..... .......... .......... .......... 57 GACCTCACTT TTGAGATCAC GTTTGAGTAT ACTGTTGTGA TACAAACTAT TGATAGGACA 32299 .......... .......... .......... .......... .......... .......... 57 ATTTCGTCTT TTTCCTGGTA CAGGTGTCAG TACGCGATAC TATTGAGCAT ATCATGGTTC 32359 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTGTCAG TACGCGATAC TATTGAGCAT ATCATGGTTC 94 CATTTACTGA AGCACAGCCT TTGCAAGCTA CCCTGAAACT AAAGCAAGTG GTCATGCGTT 32419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTACTGA AGCACAGCCT TTGCAAGCTA CCCTGAAACT AAAGCAAGTG GTCATGCGTT 154 TCTTCAGGGA TTCGACTGTT CCAGTCATAG ATGATTGGGG AAGTTGTGTT GGAATACTGC 32479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCAGGGA TTCGACTGTT CCAGTCATAG ATGATTGGGG AAGTTGTGTT GGAATACTGC 214 ATTGTGAAGA CTGCAATGAG GTACTTTATC TTCGACTTCT ATGATCTATT TGGCTATCTT 32539 |||||||||| |||||||||| ATTGTGAAGA CTGCAATGAG .......... .......... .......... .......... 234 TATTCACTGC ACGACTCTAT TCTGTAGTTT TTCTTGGTGT GCTTCTGAAA TATTATACAC 32599 .......... .......... .......... .......... .......... .......... 234 TCTTCTACCG CTACAACTCT ATCTTAGTAA TATCTTTATC ATTTGGTTAC ATTGACATTG 32659 .......... .......... .......... .......... .......... .......... 234 TATGTTTGAG GTGTTGTAGA GATTATTTAT CTATTAGCAG CTTGCTTGGG AATCTTATCC 32719 .......... .......... .......... .......... .......... .......... 234 CGGATGTCGA AATCTGATTA CTACCATATT CATGCCGATA ATAAGATTAT ATATCCTTAA 32779 .......... .......... .......... .......... .......... .......... 234 GAACATAGAG TTTTTAGTGA TGAGCTATTG AATTAGCTGT GGGCAGGGAT TGAATTAGCT 32839 .......... .......... .......... .......... .......... .......... 234 GAAGAGGGGT TTATGTAAAT AAGAAAATTT TGGGATTTTA AAAATGTTTT ATTAGTACTC 32899 .......... .......... .......... .......... .......... .......... 234 TAATTAAAAA AGAGTCCCTC CTACCCAATT TTTAAAACTT GAGTTTTAGA CTCTGAAATA 32959 .......... .......... .......... .......... .......... .......... 234 AAAGCCACAA AAGGTTCTTT TGATTCAACG TCCTTACTAT GTCTCAATTA GCAAGTTATA 33019 .......... .......... .......... .......... .......... .......... 234 GGACATGTTT TTCAAGATGG TGCATGGGAC CCAGTTACTG CTTAAGTGGC TCCTTTCTGA 33079 .......... .......... .......... .......... .......... .......... 234 ACGATCCAGT CAATGGCATC CTTGCAGACG GATCAGAGCC TTTCTCTGGA TGCTTATAGA 33139 .......... .......... .......... .......... .......... .......... 234 ACCCAAGACA AGGAATTATC ATTGTTCTAA CCCAAGGAAC TAAGCAGGAA AACAGAAACA 33199 .......... .......... .......... .......... .......... .......... 234 CCTCTTATTA ATTCTGCATT GTTCATCCCT TACACTTTCT CCAACTTCAA CGGAGAGGAA 33259 .......... .......... .......... .......... .......... .......... 234 ATTATGGTCA GTCCTCACAG ATGAGGTCAA CCTCCTTGTC CCTTGAAAAT GACTGGTTGA 33319 .......... .......... .......... .......... .......... .......... 234 TCCTATCCAG ACAGTTTGAA AAAATAGAAG TGAGTCAAGT GACTAAGGTG GGAAGTATTG 33379 .......... .......... .......... .......... .......... .......... 234 GTCTTCATTT CAAGCAATTA TCAGTCTACC TCACATAGAG ATAGAGTTAT CTGCTTCTAC 33439 .......... .......... .......... .......... .......... .......... 234 ATGACATCAA ACTCCAGAAG ACTAGTATAT GAGAAAGTTC AATAGTGGAT CAGATTACTA 33499 .......... .......... .......... .......... .......... .......... 234 AGAGTTAAAC TTAAGGACAG CTATCCTAGA GCAAGGACAC TGCTATGTGG TTGGCATTTT 33559 .......... .......... .......... .......... .......... .......... 234 CTCAGTTCCA CGCCTTTGTT CAGGCTGCAT GGACTATTTC TCATTCTTCA TTCTGTTTCC 33619 .......... .......... .......... .......... .......... .......... 234 TGTTCATGTG AAATTGATCT GAACTTGTTA TCTCAGAAAA AATGCTCGGG TTCATTGTGA 33679 .......... .......... .......... .......... .......... .......... 234 AACGTAAAAG AAAAATAAAA ACAGAAACTA ATATTCTAAA TTCCTGTGTC CATTGCTTTA 33739 .......... .......... .......... .......... .......... .......... 234 TTGAATAGTT AATTTGGTTG TCTGCTCAGA GATGACACAC TTGGGTTGCG GAGTTCTTAT 33799 .......... .......... .......... .......... .......... .......... 234 AATGTTATTA TACCTGTTGT TGCAGCTGGA TGCGCCGCTT TCAGCCATGA TGAGAAGTCC 33859 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CTGGA TGCGCCGCTT TCAGCCATGA TGAGAAGTCC 269 ACCTCCTTCT GTGACAACCT CAACATCCAT TGGTCGTGTT ATTGATCTAA TGCTAGAGAA 33919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCCTTCT GTGACAACCT CAACATCCAT TGGTCGTGTT ATTGATCTAA TGCTAGAGAA 329 GAAGTACAAA ATGGTTATTG TTGCAAAATA CGAAAATGTG CGCGGGATGT TTTACAGCTC 33979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTACAAA ATGGTTATTG TTGCAAAATA CGAAAATGTG CGCGGGATGT TTTACAGCTC 389 CAGTGTAAGG GCTGTCGGAG TTTTTACGTC TGAACAGCTA TATAAGCTTG CTCCAACTTC 34039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGTAAGG GCTGTCGGAG TTTTTACGTC TGAACAGCTA TATAAGCTTG CTCCAACTTC 449 ATCAGAGCTA AGTCTTCAAT ATTCTTCTGC CTGTAGAGAA CATATTGAAA TTTGTAGGTA 34099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGAGCTA AGTCTTCAAT ATTCTTCTGC CTGTAGAGAA CATATTGAAA TTTGTAGGTA 509 GTATACCTCG AGAAAGAAGT TTGCTTGAAC TTGCTCTTTT TCCACTGTAG AGTAGGCTAT 34159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATACCTCG AGAAAGAAGT TTGCTTGAAC TTGCTCTTTT TCCACTGTAG AGTAGGCTAT 569 CATTTCTTTT GGGCTGCTGA GTTTTTCGTG TGTCACTTAT TGCGTGCTAG ATTGCAATAC 34219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCTTTT GGGCTGCTGA GTTTTTCGTG TGTCACTTAT TGCGTGCTAG ATTGCAATAC 629 TATTGACTTT GAATGGTTTG ACTATCTGTT CAACTTTATA TAATGTTGGT GCTGGGCCTG 34279 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGACTNT GAATGGTTTG ACTATCTGTT CAACTTTATA TAATGTTGGT GCTGGGCCTG 689 ACAAAAATAT TCACAGTATA TGGAAATTTT GGAGTTGTTG AGACAACTAA AAAACTAAA 34338 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||| AC-AAAATAT TCACAGTATA TGGAAATTTT GGAGTTGTTG AGACAACTAA AAAAAAAAA 747 hqPGS_C08HBa0037O11.1+_SGN-E339946+ (31340 31363,32172 32204,32323 32499,33825 34338) ******************************************************************************** EST sequence 111 -strand 612 n (File: SGN-E541526-) 1 GTTCCATTTA CTGAAGCCCA GCCTTTGCAA GTTTCCCTGA AAATAAAGCA AGTGGTCATG 61 CGTTTTTTCA GGGGTTCGAC TGTTCCAGTC ATAGAAGATT GGGGAAATTG TGTTGGAAAA 121 CTGCATTGTG AAGACCGCAA TGAGCTGGGT GCGCCGCTTT CAGCCCTGAT GGGAAGTCCC 181 CCTCCTTTTG TGGCAACCTC AACATCCCTT GGTGGGGTTA TTGATCTAAT GCTAGGGAAG 241 AAGTTCAAAA TGGTTTTTGT TGCAAAATAC GAAAAAGTGC GCGGGGTGTT TTACAGCTCC 301 CGTGTAAGGG CTGTCGGGGT TTTTACGTTT GAACAGCTAT ATAAGCTTGC TCCCACTTCA 361 TCAGGGGTAA GTTTTCAATA TTTTTTTGCC CGTAGGGAAC ATATTGAAAT TTGTAGGGAG 421 TATACCTCGG GAAAGAAGTT TGCTTGAACT TGCTCTTTTT CCCCTGTAGA GTAGGGTATC 481 ATTTTTTTTG GGGGGCTGAG TTTTTCGGGT GTCCCTTATT GCGGGGTAGA TTGCAAAACT 541 ATTGACTTTG AATGGTTTGG AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 601 AAAAAAAGGG AA Predicted gene structure (within gDNA segment 31359 to 36242): Exon 1 32356 32499 ( 144 n); cDNA 1 144 ( 144 n); score: 0.931 Intron 1 32500 33824 (1325 n); Pd: 0.995 (s: 0.92), Pa: 0.992 (s: 0.88) Exon 2 33825 34239 ( 415 n); cDNA 145 559 ( 415 n); score: 0.911 PPA cDNA 562 608 MATCH C08HBa0037O11.1+ SGN-E541526- 0.916 559 0.913 C PGS_C08HBa0037O11.1+_SGN-E541526- (32356 32499,33825 34239) Alignment (genomic DNA sequence = upper lines): GTTCCATTTA CTGAAGCACA GCCTTTGCAA GCTACCCTGA AACTAAAGCA AGTGGTCATG 32415 |||||||||| ||||||| || |||||||||| | | |||||| || ||||||| |||||||||| GTTCCATTTA CTGAAGCCCA GCCTTTGCAA GTTTCCCTGA AAATAAAGCA AGTGGTCATG 60 CGTTTCTTCA GGGATTCGAC TGTTCCAGTC ATAGATGATT GGGGAAGTTG TGTTGGAATA 32475 ||||| |||| ||| |||||| |||||||||| ||||| |||| |||||| ||| |||||||| | CGTTTTTTCA GGGGTTCGAC TGTTCCAGTC ATAGAAGATT GGGGAAATTG TGTTGGAAAA 120 CTGCATTGTG AAGACTGCAA TGAGGTACTT TATCTTCGAC TTCTATGATC TATTTGGCTA 32535 |||||||||| ||||| |||| |||| CTGCATTGTG AAGACCGCAA TGAG...... .......... .......... .......... 144 TCTTTATTCA CTGCACGACT CTATTCTGTA GTTTTTCTTG GTGTGCTTCT GAAATATTAT 32595 .......... .......... .......... .......... .......... .......... 144 ACACTCTTCT ACCGCTACAA CTCTATCTTA GTAATATCTT TATCATTTGG TTACATTGAC 32655 .......... .......... .......... .......... .......... .......... 144 ATTGTATGTT TGAGGTGTTG TAGAGATTAT TTATCTATTA GCAGCTTGCT TGGGAATCTT 32715 .......... .......... .......... .......... .......... .......... 144 ATCCCGGATG TCGAAATCTG ATTACTACCA TATTCATGCC GATAATAAGA TTATATATCC 32775 .......... .......... .......... .......... .......... .......... 144 TTAAGAACAT AGAGTTTTTA GTGATGAGCT ATTGAATTAG CTGTGGGCAG GGATTGAATT 32835 .......... .......... .......... .......... .......... .......... 144 AGCTGAAGAG GGGTTTATGT AAATAAGAAA ATTTTGGGAT TTTAAAAATG TTTTATTAGT 32895 .......... .......... .......... .......... .......... .......... 144 ACTCTAATTA AAAAAGAGTC CCTCCTACCC AATTTTTAAA ACTTGAGTTT TAGACTCTGA 32955 .......... .......... .......... .......... .......... .......... 144 AATAAAAGCC ACAAAAGGTT CTTTTGATTC AACGTCCTTA CTATGTCTCA ATTAGCAAGT 33015 .......... .......... .......... .......... .......... .......... 144 TATAGGACAT GTTTTTCAAG ATGGTGCATG GGACCCAGTT ACTGCTTAAG TGGCTCCTTT 33075 .......... .......... .......... .......... .......... .......... 144 CTGAACGATC CAGTCAATGG CATCCTTGCA GACGGATCAG AGCCTTTCTC TGGATGCTTA 33135 .......... .......... .......... .......... .......... .......... 144 TAGAACCCAA GACAAGGAAT TATCATTGTT CTAACCCAAG GAACTAAGCA GGAAAACAGA 33195 .......... .......... .......... .......... .......... .......... 144 AACACCTCTT ATTAATTCTG CATTGTTCAT CCCTTACACT TTCTCCAACT TCAACGGAGA 33255 .......... .......... .......... .......... .......... .......... 144 GGAAATTATG GTCAGTCCTC ACAGATGAGG TCAACCTCCT TGTCCCTTGA AAATGACTGG 33315 .......... .......... .......... .......... .......... .......... 144 TTGATCCTAT CCAGACAGTT TGAAAAAATA GAAGTGAGTC AAGTGACTAA GGTGGGAAGT 33375 .......... .......... .......... .......... .......... .......... 144 ATTGGTCTTC ATTTCAAGCA ATTATCAGTC TACCTCACAT AGAGATAGAG TTATCTGCTT 33435 .......... .......... .......... .......... .......... .......... 144 CTACATGACA TCAAACTCCA GAAGACTAGT ATATGAGAAA GTTCAATAGT GGATCAGATT 33495 .......... .......... .......... .......... .......... .......... 144 ACTAAGAGTT AAACTTAAGG ACAGCTATCC TAGAGCAAGG ACACTGCTAT GTGGTTGGCA 33555 .......... .......... .......... .......... .......... .......... 144 TTTTCTCAGT TCCACGCCTT TGTTCAGGCT GCATGGACTA TTTCTCATTC TTCATTCTGT 33615 .......... .......... .......... .......... .......... .......... 144 TTCCTGTTCA TGTGAAATTG ATCTGAACTT GTTATCTCAG AAAAAATGCT CGGGTTCATT 33675 .......... .......... .......... .......... .......... .......... 144 GTGAAACGTA AAAGAAAAAT AAAAACAGAA ACTAATATTC TAAATTCCTG TGTCCATTGC 33735 .......... .......... .......... .......... .......... .......... 144 TTTATTGAAT AGTTAATTTG GTTGTCTGCT CAGAGATGAC ACACTTGGGT TGCGGAGTTC 33795 .......... .......... .......... .......... .......... .......... 144 TTATAATGTT ATTATACCTG TTGTTGCAGC TGGATGCGCC GCTTTCAGCC ATGATGAGAA 33855 | ||| |||||| |||||||||| ||||| ||| .......... .......... .........C TGGGTGCGCC GCTTTCAGCC CTGATGGGAA 175 GTCCACCTCC TTCTGTGACA ACCTCAACAT CCATTGGTCG TGTTATTGAT CTAATGCTAG 33915 |||| ||||| || |||| || |||||||||| || ||||| | ||||||||| |||||||||| GTCCCCCTCC TTTTGTGGCA ACCTCAACAT CCCTTGGTGG GGTTATTGAT CTAATGCTAG 235 AGAAGAAGTA CAAAATGGTT ATTGTTGCAA AATACGAAAA TGTGCGCGGG ATGTTTTACA 33975 |||||||| |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| GGAAGAAGTT CAAAATGGTT TTTGTTGCAA AATACGAAAA AGTGCGCGGG GTGTTTTACA 295 GCTCCAGTGT AAGGGCTGTC GGAGTTTTTA CGTCTGAACA GCTATATAAG CTTGCTCCAA 34035 ||||| |||| |||||||||| || ||||||| ||| |||||| |||||||||| |||||||| | GCTCCCGTGT AAGGGCTGTC GGGGTTTTTA CGTTTGAACA GCTATATAAG CTTGCTCCCA 355 CTTCATCAGA GCTAAGTCTT CAATATTCTT CTGCCTGTAG AGAACATATT GAAATTTGTA 34095 ||||||||| | ||||| || ||||||| || |||| |||| ||||||||| |||||||||| CTTCATCAGG GGTAAGTTTT CAATATTTTT TTGCCCGTAG GGAACATATT GAAATTTGTA 415 GGTAGTATAC CTCGAGAAAG AAGTTTGCTT GAACTTGCTC TTTTTCCACT GTAGAGTAGG 34155 || ||||||| |||| ||||| |||||||||| |||||||||| ||||||| || |||||||||| GGGAGTATAC CTCGGGAAAG AAGTTTGCTT GAACTTGCTC TTTTTCCCCT GTAGAGTAGG 475 CTATCATTTC TTTTGGGCTG CTGAGTTTTT CGTGTGTCAC TTATTGCGTG CTAGATTGCA 34215 |||||||| ||||||| | |||||||||| || ||||| | |||||||| | ||||||||| GTATCATTTT TTTTGGGGGG CTGAGTTTTT CGGGTGTCCC TTATTGCGGG GTAGATTGCA 535 ATACTATTGA CTTTGAATGG TTTG 34239 | |||||||| |||||||||| |||| AAACTATTGA CTTTGAATGG TTTG 559 hqPGS_C08HBa0037O11.1+_SGN-E541526- (32356 32499,33825 34239) ******************************************************************************** EST sequence 128 +strand 514 n (File: SGN-E330401+) 1 AAGAGCAAGA GAGCCAGCTC CTGCAGGGAA GGAGAAGAGA GGAACATCAC CAATACATCA 61 CCAAAGAAGC ACAACAAACA CATCAAAAAC AACATCAACT GTTAGAAAAC AAACTGATCC 121 AACATTAACC ACTAGTTCCT TAAACAAGAA TGTTCCTAGC TACCTCAAAC CAACAATTAC 181 TCAAGCTAAG AAGTCTGCAT CTTCAGGTGA CCTGCACAAC ACTCACAGTA CCAAAACTTC 241 TAATCTAGCT CGAAAGAGAT CATTCGATAA TAACCCTCCC CTGCATTCTT CCTCACCAAA 301 AACCCGAATT TCCCCTAGTC CTAAAGAGAG AATTCCTCGT TCATCGTCTT CTTTATCAAC 361 CAAGACTTCC ACTTCCCAGA AACCCCTTTT GGATAGATTA TCAAAAACTA CGACTAGTAA 421 GGATGCCATT GGCAAACAAC GCAGTGCTGG CCTAAATTCT AGGCCAGTGA CCAAAAGAAA 481 GACGACCACA ACCACAACCA GGAAGCATGA TAGT Predicted gene structure (within gDNA segment 37107 to 35384): Exon 1 36507 35994 ( 514 n); cDNA 1 514 ( 514 n); score: 0.996 MATCH C08HBa0037O11.1- SGN-E330401+ 0.996 514 1.000 C PGS_C08HBa0037O11.1-_SGN-E330401+ (36507 35994) Alignment (genomic DNA sequence = upper lines): AAGAGCAAGA GAGCCAGCTC CTGCAGGGAA GGAGAAGAGA GGAACATCAC CAATACATCA 36448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGCAAGA GAGCCAGCTC CTGCAGGGAA GGAGAAGAGA GGAACATCAC CAATACATCA 60 CCAAAGAAGC ACAACAAACA CATCAAAAAC AACATCAACT GTTAGAAAAC AAACTGATCC 36388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAGAAGC ACAACAAACA CATCAAAAAC AACATCAACT GTTAGAAAAC AAACTGATCC 120 AACATTAACC ACTAGTTCCT TAAACAAGAA TGTTCCTAGC TACCTCAAAC CAACAATTAC 36328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATTAACC ACTAGTTCCT TAAACAAGAA TGTTCCTAGC TACCTCAAAC CAACAATTAC 180 TCAAGCTAAG AAGTCTGCAT CTTCAGGTGA CCTGCACAAC ACTCACAGTA CCAAAACTTC 36268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGCTAAG AAGTCTGCAT CTTCAGGTGA CCTGCACAAC ACTCACAGTA CCAAAACTTC 240 TAATCTAGCT CGAAGGAGAT CATTCGATAA TAACCCTCCC CTGCATTCTT CCTCACCAAA 36208 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCTAGCT CGAAAGAGAT CATTCGATAA TAACCCTCCC CTGCATTCTT CCTCACCAAA 300 AACCCGAATT TCCCCTAGTC CTAAGGAGAG AATTCCTCGT TCATCGTCTT CTTTATCAAC 36148 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AACCCGAATT TCCCCTAGTC CTAAAGAGAG AATTCCTCGT TCATCGTCTT CTTTATCAAC 360 CAAGACTTCC ACTTCCCAGA AACCCCTTTT GGATAGATTA TCAAAAACTA CGACTAGTAA 36088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACTTCC ACTTCCCAGA AACCCCTTTT GGATAGATTA TCAAAAACTA CGACTAGTAA 420 GGATGCCATT GGCAAACAAC GCAGTGCTGG CCTAAATTCT AGGCCAGTGA CCAAAAGAAA 36028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGCCATT GGCAAACAAC GCAGTGCTGG CCTAAATTCT AGGCCAGTGA CCAAAAGAAA 480 GACGACCACA ACCACAACCA GGAAGCATGA TAGT 35994 |||||||||| |||||||||| |||||||||| |||| GACGACCACA ACCACAACCA GGAAGCATGA TAGT 514 hqPGS_C08HBa0037O11.1-_SGN-E330401+ (36507 35994) ******************************************************************************** EST sequence 13 -strand 716 n (File: SGN-E577713-) 1 AAAAAGGCTT CGAAAGGGAG GTGAGTTTAA TGGTTCTTAC ACTAGAGGAC AGGGTTCGGG 61 AAGTTACTCA GTCCGACCAA TTGAGTCTTC ACTACAGACT GTAGTTGGGG GACCACCTCA 121 GACCGGTCAA CACTTCTCCG AGGGGCCTAG GATTGACTCC AGAGAATGGT ATGGATGTGG 181 GGAGATTGGA CATATTAGGA AAAATTGTCC CAGACAAAGT TATAGACCCC CAATAGCTAG 241 AGGTAGAGGT GGTCATGGTA GAGGCCGTTA TTCTGGAGGA CGTGGTGGTC GAGGTAATGG 301 TGGTCACCAA AACGGCAGAG GTAATGGGCA AACTTGGGCC ACTACATCAC AACATGGTAG 361 GGGCAACGGA CAGACGAACG ATAGGGCCCA TTGTTACGCT TTCCCTGGGC GGTGTGAAGC 421 GGAGGCATCT GATGTTGTCA TCACAGGTAA TCTTCTGGTT TGTGATTGCA TGGCTTCTGT 481 ATTGTTTGAT CCTGGATCCA CGTTTTCTTA TGTATCTTCC TTATTTGCTT TCTTTTCCTC 541 TGGCTACTAA GATGTTTCAG TTCGCCAGGT TGTCTCTTGC CTGCCCATGG ATTCAGCAGC 601 AGTTCGAAAG GTTGCCCTAT TCGGGAATCT CCGGATCTAT GCTTATTTTC AACTCCCCGA 661 AGCATTTCGT CGATTACTAC GCCCTTCCTC GTCTCTGGGT GCCTAGGTAT CCACCG Predicted gene structure (within gDNA segment 45021 to 37363): Exon 1 38041 37964 ( 78 n); cDNA 638 715 ( 78 n); score: 1.000 MATCH C08HBa0037O11.1- SGN-E577713- 1.000 78 0.109 C PGS_C08HBa0037O11.1-_SGN-E577713- (38041 37964) Alignment (genomic DNA sequence = upper lines): TATGCTTATT TTCAACTCCC CGAAGCATTT CGTCGATTAC TACGCCCTTC CTCGTCTCTG 37982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCTTATT TTCAACTCCC CGAAGCATTT CGTCGATTAC TACGCCCTTC CTCGTCTCTG 697 GGTGCCTAGG TATCCACC 37964 |||||||||| |||||||| GGTGCCTAGG TATCCACC 715 hqPGS_C08HBa0037O11.1-_SGN-E577713- (38041 37964) ******************************************************************************** EST sequence 38 -strand 651 n (File: SGN-E549799-) 1 GGATGTGGAG CACGAACGCA TAGAACTTTT TTCTTTTCCT TTCCCTCCCT CGCTTACAGT 61 TACTTCCAAT TCCAACCAAT TTCTAGTTAA TGCACCCATA AGAACCCGAC AATCCCCCGT 121 ATGGAGCCAC CGTCGTTTCG TCTGGCATGT ACTCTCGGGA CCTCCGAGTA CGACAAAGTG 181 AAAGGAGACA AGACTCACCT CCCCCTACTT TGTCAATCAC AGCCGTCTCG TCTATTCTAT 241 TCTCGAAAGC GTGTAGACAG AAGGCCCTTT TTTCGGACTG TCTTGTTTTC AGGCCTCCAC 301 GGCCGTCCGG GGTTCTCCAT TCTCAGAAAG CTTCAACTTT CCCACGTGTG CGCAAGCTTG 361 CGAATAGTTT CTGCGATCAC TCTACGTAAT TTATTAAACC GGTTTATGCT TGTAGCTACC 421 CCCGGGGGGA ATACGTGTAA TAGCCCCGCG GGGAACCCCC GCCCGGAGGC GGGAATCTCT 481 TTTAATTTGT CTCTGCGATT GGTCTTTCCT GCAGCTGGAC CGCACCTTCG CTTCGCACCT 541 CTGCTTTGTA TGCAAAATAT TGAATAAGGG TTTAATAAGG AGATCTCTTA ATTACTTGAT 601 CAAGGAACAG TGCTTTCGAA CATTACTTAC GAGAATCTCA ATCCTTCTGC C Predicted gene structure (within gDNA segment 42515 to 35831): Exon 1 38973 38958 ( 16 n); cDNA 358 373 ( 16 n); score: 0.750 Intron 1 38957 38158 ( 800 n); Pd: 1.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 38157 38043 ( 115 n); cDNA 374 488 ( 115 n); score: 0.974 PPA cDNA 37 27 MATCH C08HBa0037O11.1- SGN-E549799- 0.974 131 0.201 C PGS_C08HBa0037O11.1-_SGN-E549799- (38973 38958,38157 38043) Alignment (genomic DNA sequence = upper lines): TTTCAAATAG TTTAAGGCAA AATTGAAGGG AAAAATGACC TATTTTTCTT ATTTTAAAGT 38914 || | ||||| ||| | TTGCGAATAG TTTCTG.... .......... .......... .......... .......... 373 CATAGTTAAT AAGAAGAGTA TTTTAAGCTA TTTTGATAGT TAAAAGAATA TTTAATAAGT 38854 .......... .......... .......... .......... .......... .......... 373 TATCAAATAA TAATATTGCT TCTTTGGCGT GTTTTTTTTA TCTCATAACT AAAAACTTTC 38794 .......... .......... .......... .......... .......... .......... 373 TTTCTTTCTT TTCTCAATCA AACACCCTTT TTTCCTCTTG AATTGGTAAG TTTTCATAAA 38734 .......... .......... .......... .......... .......... .......... 373 TATTTTTAAG TTTTTTTTAT ATTAATAATT TTATTGTATT GACTGTGTCA AGAACACTGT 38674 .......... .......... .......... .......... .......... .......... 373 TTGTGTATTG GTGTTTATCA AGGTTTGAAT AATTGTACTC TAAATCATGA TTATTAAAAC 38614 .......... .......... .......... .......... .......... .......... 373 TTTCAAAACT TTTTTTTATC AAAAGTGATA TATTTTGTTG AAATGAAATT TTTATGACAT 38554 .......... .......... .......... .......... .......... .......... 373 TTTATTAATT TAATGTTAAT TTTACATGCA CATTCATATA TTAAAAACAA ACAACATTAA 38494 .......... .......... .......... .......... .......... .......... 373 TTATTTAGTG TTTAGATTTA GAGACCACAT CTTAATATTT AGATGTGTAT TCAGATCAAA 38434 .......... .......... .......... .......... .......... .......... 373 ACACTTGAAT CTTAATGTAA ATCTTAATAT TCAGATTCAG ACCTTTTAAT CTTAATAAAA 38374 .......... .......... .......... .......... .......... .......... 373 ACAAATGAGT TCTTAGTGTA CGAAGCTTTA AGCTCTTATT GTTTGCTTCA CCGTATTTTT 38314 .......... .......... .......... .......... .......... .......... 373 TGATGCGTCG GTACATTTGA CGCCGATAAT ATAATCAAAG TTGAGGCCCC ATTTCGAACC 38254 .......... .......... .......... .......... .......... .......... 373 TTATACAAAA GGTTTTTCCG TACCAGCTCC TTCTACCTAT ACCGCAGTTG AAGCACCTAA 38194 .......... .......... .......... .......... .......... .......... 373 AGGAGAATTT GGTGTCTTTC TGGTCAGTAA TGGAAGCAAT CACTCTACGT AATTTATTAA 38134 | || |||||||||| |||||||||| .......... .......... .......... ......CGAT CACTCTACGT AATTTATTAA 397 ACCGGTTTAT GCTTGTAGCT ACCCTCGGGG GGAATACGTG TAATAGCCCC GCGGGGAACC 38074 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ACCGGTTTAT GCTTGTAGCT ACCCCCGGGG GGAATACGTG TAATAGCCCC GCGGGGAACC 457 CCCGCCCGGA GGCGGAAATC TCTTTTAATT T 38043 |||||||||| ||||| |||| |||||||||| | CCCGCCCGGA GGCGGGAATC TCTTTTAATT T 488 hqPGS_C08HBa0037O11.1-_SGN-E549799- (38157 38043) ******************************************************************************** EST sequence 18 -strand 382 n (File: SGN-E239658-) 1 TTTTTTCGGA CTGTCATGTT TTCAGGCCTC CACGGCCGTA CGGGGTTCTC CATTCTCAGA 61 AAGCTTCAAC TTTCCCACGT GTGCGCAAGC ATGCGAATAG TTTCTGCGAT CACTCTACGT 121 AATTTATTAA ACCGGTTTAT GCTTGTAGCT ACCCCCGGGG GGAATACGTG TAATAGCCCC 181 GCGGGGAACC CCCGCCCGGA GGCGGGAATC TCTTTTAATT TGTCTCTGCG ATTGGTCTTT 241 CCTGCAGGTG GACCGCACCT TCGCTTCGCA CCTCTGCTTT GTATGCAAAA TATTGAATAA 301 GGGTTTAATA AGGAGATCTC TTAATTACTT GATCAAGGAA CAGTGCTTTC GAACATTACT 361 TACGAGAATC TCAATCCTTC TG Predicted gene structure (within gDNA segment 40445 to 35851): Exon 1 38155 38043 ( 113 n); cDNA 109 221 ( 113 n); score: 0.982 MATCH C08HBa0037O11.1- SGN-E239658- 0.982 113 0.296 C PGS_C08HBa0037O11.1-_SGN-E239658- (38155 38043) Alignment (genomic DNA sequence = upper lines): ATCACTCTAC GTAATTTATT AAACCGGTTT ATGCTTGTAG CTACCCTCGG GGGGAATACG 38096 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ATCACTCTAC GTAATTTATT AAACCGGTTT ATGCTTGTAG CTACCCCCGG GGGGAATACG 168 TGTAATAGCC CCGCGGGGAA CCCCCGCCCG GAGGCGGAAA TCTCTTTTAA TTT 38043 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||| TGTAATAGCC CCGCGGGGAA CCCCCGCCCG GAGGCGGGAA TCTCTTTTAA TTT 221 hqPGS_C08HBa0037O11.1-_SGN-E239658- (38155 38043) ******************************************************************************** EST sequence 5 -strand 731 n (File: SGN-E578234-) 1 GCTTGTAGCT ACCCCGGGGG GGAATACGTG TAATAGCNCC GCGGGGAACC CCCGCCCGGA 61 GGCGGGAATC TCTTTTAATT TGTCTCTGCG ATTGGTCTTT CCTGCAGCTG GACCGCACCT 121 TCGCTTCGCA CCTCTGCTTT GTATGCAAAA TATTGAATAA GGGTTTAATA AGGAGATCTC 181 TTAATTACTT GATCAAGGAA CAGTGCTTTC GAACATTACT TACGAGAATC TCAATCCTTC 241 TGCCTCACCT TCTGAAAGGG TAGTAAGAAG GGGGGTTCGG GTGCGCTTCT TCTTCCTGCC 301 GGTTCAGGAG CTTAGGCCCA AGCGGTAGTA GTTTCCTAGT TGGAGTTGGC ACACGTAGGC 361 CCGACACCAG AGGTTGGTTG GCGCATTCGG TAAAGCATTC CGCTAGCTGG CGCATAGCAA 421 GCAAGAAAGC TCAAAGCAAA GCCAGCAGTA AGGTCCGGAG CAGGAGCATT AGGGTAGGCG 481 ATGGCCGCTG CATGGTGGAA TTTAGCAAGT TGCCGGAAAC CGGCACCACC TACCCGAGCA 541 AGAGTTGTGC TCACCGGGTA AATCCGGAGA AGGGGAATTG AACTCTATGA GATCGAATCT 601 CCTGTTGTTC CTCAGTAGCT CAGTGGTAGA GCGGTCGGCT GTTAACCGAT TGGTCGTAGG 661 TTCGAATCCT ACTTGGGGAG ATTTGATTGA TTCCTAATTC TTTAATTCAG AATAAAGGGG 721 CTCGCTTTGC C Predicted gene structure (within gDNA segment 38877 to 30961): Exon 1 38123 38043 ( 81 n); cDNA 1 81 ( 81 n); score: 0.951 MATCH C08HBa0037O11.1- SGN-E578234- 0.951 81 0.111 C PGS_C08HBa0037O11.1-_SGN-E578234- (38123 38043) Alignment (genomic DNA sequence = upper lines): GCTTGTAGCT ACCCTCGGGG GGAATACGTG TAATAGCCCC GCGGGGAACC CCCGCCCGGA 38064 |||||||||| |||| |||| |||||||||| ||||||| || |||||||||| |||||||||| GCTTGTAGCT ACCCCGGGGG GGAATACGTG TAATAGCNCC GCGGGGAACC CCCGCCCGGA 60 GGCGGAAATC TCTTTTAATT T 38043 ||||| |||| |||||||||| | GGCGGGAATC TCTTTTAATT T 81 hqPGS_C08HBa0037O11.1-_SGN-E578234- (38123 38043) ******************************************************************************** EST sequence 114 +strand 784 n (File: SGN-E542260+) 1 GAAAAGTCTC TTCCAATGGA TTGTCAATTT CTCCTCAACA AGTGCTTTGT CTAATACATT 61 ACACCAAGTT TGAGAAAAAC AAGATCCAGC GGATGAAAAT ACAACAAAAA AAGAGGCAGC 121 GCTGGATTGT CAATTTCTCC TCAACAATAG CTCTCTCTAA TACATTAGAG CAAGTTGAAG 181 AAAATATACA TCAAGTTAAA AGTGGAAGGA AGAACGAGAG AACAAAGAAC AGACCTTTTT 241 TTAAATCTCC ATCTGTTAGA CTCGTAAATT ACTTGATCTA ATTACGTACA AACATGTCAA 301 GGACTTGGGC ATTGGTCTTG ACATGAATGA GGGCAAAACA GTGCAACACA GGTTCAAGGT 361 GTTTGGGTGT TGGCAAGGCA ACTTGAACAT GCAAGGCTTA AGTGCGGGCT AGAGTCATCG 421 GCAAGGCAGC GTGTTGGCTT GACAAGGCAA AACTGTGAAG ACTTGACGAT GGTAAGAACA 481 AAGGCATTCC ACGTAAATTG CTGAAATAAA ACCAAGTGTT GGAGGACAAC TAAAATATTC 541 TAAGTGTTGG AAGCTGGCTG AAATAATCTA AGTGTTGGAA TGTAGCCTGA AATATTCTAA 601 GTGTTAAAAT ATTAATATTT CGTGTGGATA AAGATGTAAT TTAAATTAGA GTCTATCTGT 661 TAGAAATATA TCTGTTGGAA ACTTAGTTTG AATCTTGTGA TGACNAGTGT CGGACATGTG 721 TCATTTGTAA CTGCCGCATG TAACTGCCAT GTGCAGAAAT TTTAATAGGG TGGAAAATTT 781 GTTT Predicted gene structure (within gDNA segment 44987 to 40080): Exon 1 41374 41035 ( 340 n); cDNA 251 589 ( 339 n); score: 0.885 Intron 1 41034 40898 ( 137 n); Pd: 0.000 (s: 0.84), Pa: 0.509 (s: 0) Exon 2 40897 40874 ( 24 n); cDNA 590 612 ( 23 n); score: 0.708 Intron 2 40873 40727 ( 147 n); Pd: 0.000 (s: 0), Pa: 0.742 (s: 0) Exon 3 40726 40708 ( 19 n); cDNA 613 632 ( 20 n); score: 0.658 MATCH C08HBa0037O11.1- SGN-E542260+ 0.885 383 0.489 C PGS_C08HBa0037O11.1-_SGN-E542260+ (41374 41035,40897 40874,40726 40708) Alignment (genomic DNA sequence = upper lines): ATGTGTTAGA CCCGTAAACT ATTTGATCTA ACTACGTGCA GACATGTCAA GATCTTAGGC 41315 || ||||||| | |||||| | | |||||||| | ||||| || ||||||||| | ||| ||| ATCTGTTAGA CTCGTAAATT ACTTGATCTA ATTACGTACA AACATGTCAA GGACTTGGGC 310 ATTGGTCTTG ACATGGATGA GGGCAAAACA GTGCAACACA AGTTCAAGAT GCTTGAGTGT 41255 |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| | | ||| |||| ATTGGTCTTG ACATGAATGA GGGCAAAACA GTGCAACACA GGTTCAAGGT GTTTGGGTGT 370 TGGCAAGGCA GCTTGAATGT GCAAGGCTTA CGTGCGGGCT AGAGTCATTG GCAAGACAGC 41195 |||||||||| |||||| | |||||||||| ||||||||| |||||||| | ||||| |||| TGGCAAGGCA ACTTGAACAT GCAAGGCTTA AGTGCGGGCT AGAGTCATCG GCAAGGCAGC 430 GTGTTGGCTT GACAAGGCAA AGCTGTGAAG ACTTGATAAT GGCAAGAACA AAGGCAGTTC 41135 |||||||||| |||||||||| | |||||||| |||||| || || ||||||| |||||| | | GTGTTGGCTT GACAAGGCAA AACTGTGAAG ACTTGACGAT GGTAAGAACA AAGGCATTCC 490 GCGTGAATTG CTGAAATAAA ACTAAGTGTT GGAGGACAGC TAAAATATTC TAAGTGTTGG 41075 ||| ||||| |||||||||| || ||||||| |||||||| | |||||||||| |||||||||| ACGTAAATTG CTGAAATAAA ACCAAGTGTT GGAGGACAAC TAAAATATTC TAAGTGTTGG 550 AAGCTGACTG AAATATTCTA AGTGTTAGAA TATTAGTATT TCGTGTAGAT AAGAATGTAA 41015 |||||| ||| ||||| |||| |||||| ||| | ||| | AAGCTGGCTG AAATAATCTA AGTGTTGGAA T-GTAGCCTG .......... .......... 589 TTTGAATTAG ATTTTATCTG TTAGAAATAT AGCTGTTGGA AACTTAGTTT GAACCCTGTG 40955 .......... .......... .......... .......... .......... .......... 589 ATGACAAGTG TCGGACATGT GTCATTTGTA ACTGCCGCAT GTAACTGCCA TGTGCAGAAA 40895 ||| .......... .......... .......... .......... .......... .......AAA 592 TTTTATTAAG GGTGAAAATT CGTCTAAGGT TGGGAGAGTG TTTTCTAGCC ATAGACAAAT 40835 | || |||| || ||||| TATT-CTAAG TGTTAAAATA T......... .......... .......... .......... 612 TCGTGAAGCT TTCCTTTATA TTAATTATCA GATTAATAAA GGTTGGGACG AGTTCCTGTA 40775 .......... .......... .......... .......... .......... .......... 612 AAGTCTGTTT GTTGTTTAAC TTTGCTGTTA AAATATTTCT ATACTTAGTC A-ATTTCGTG 40716 | | |||||||| .......... .......... .......... .......... ........TA ATATTTCGTG 624 GGTGTAAA 40708 | |||| TGGATAAA 632 hqPGS_C08HBa0037O11.1-_SGN-E542260+ (41374 41035,40897 40874) ******************************************************************************** EST sequence 115 +strand 624 n (File: SGN-E542827+) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TTGG Predicted gene structure (within gDNA segment 42735 to 37313): Exon 1 41992 41636 ( 357 n); cDNA 1 367 ( 367 n); score: 0.835 Intron 1 41635 41590 ( 46 n); Pd: 0.000 (s: 0.90), Pa: 0.974 (s: 0) Exon 2 41589 41563 ( 27 n); cDNA 368 391 ( 24 n); score: 0.704 Intron 2 41562 41526 ( 37 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 41525 41498 ( 28 n); cDNA 392 418 ( 27 n); score: 0.714 Intron 3 41497 39713 (1785 n); Pd: 0.961 (s: 0), Pa: 0.000 (s: 0) Exon 4 39712 39687 ( 26 n); cDNA 419 443 ( 25 n); score: 0.692 MATCH C08HBa0037O11.1- SGN-E542827+ 0.835 438 0.702 C PGS_C08HBa0037O11.1-_SGN-E542827+ (41992 41636,41589 41563,41525 41498,39712 39687) Alignment (genomic DNA sequence = upper lines): TTTTGACTTT TTTTGTTTTA ATGACTAATT TATAACTATT ATTTTGATAA TCAAATTTAT 41933 |||| ||| ||||| | || |||||||||| ||||| |||| |||||||||| |||||||||| TTTTCTTTTT TTTTGGT-TA ATGACTAATT TATAATTATT ATTTTGATAA TCAAATTTAT 59 TTATGTTTCA CTAATATTCT TGTAAAACTT ATTATAGATG ACCAAATTTT TTCTTCGAAT 41873 |||| ||||| |||||||||| |||||||||| ||| |||||| |||||| ||| ||||| |||| TTATATTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAAATTT TTCTTTGAAT 119 ACGAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTA- AATTTTTT-T -TTAAAACTA 41816 || ||||||| |||||||||| |||||||||| ||||||||| |||||| | || |||||| ACCAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTAG TTTTTTTTCT CTTTAAACTA 179 AGGAATGAAA GAAAAAACA- -AG------A AACTCAAATA ATTATAATAA AAGAAGTCAA 41764 |||||||||| ||||||| | || | |||||||||| |||||||||| |||||||||| AGGAATGAAA GAAAAAAAAT TAGAATAACA AACTCAAATA ATTATAATAA AAGAAGTCAA 239 AAAATAATTT ATGTATGAAA AAAATTAAA- ATATACCTTA AACTTTGATA AAAGAATCAT 41705 | |||||||| |||||| ||| ||||||||| ||| |||| |||||||||| |||||| || ACAATAATTT ATGTATAAAA AAAATTAAAT ATA-ACCTCG AACTTTGATA GAAGAATAAT 298 ATATACCCCT AAATAATTTT TTTAAAAAAA ATTAGAAGTA ACAAATATAA ATTTAAAACT 41645 ||||||| | |||||||||| |||||||| | || | ||||| | |||||||| |||||||| | ATATACCTTT AAATAATTTT TTTAAAAACA ATCAAAAGTA ATAAATATAA ATTTAAAATT 358 AATTTTTTAA TTTCCGTTAA ATAAAGGGTA TATGTGAGCC ATTTTGTAAC GGCAGGGGTA 41585 ||||||||| || AATTTTTTA. .......... .......... .......... .......... .....--ATA 370 TATGTGAGCC GTTTGTATAA CGGTAAGGGC ATATATGAGC CATTTTTATA ACGAGGGGTA 41525 ||| | |||| ||| | ||| || | TATATTAGCC ATTT-TGTAA CG........ .......... .......... .........A 392 TATCAGCTCT AAATGACAAA GTTGAGGGTA TATCAGACCC TTTTCCCTTC TTCTTTTTTT 41465 | ||| |||||||||| ||||| CA-GTGCTGC AAATGACAAA ATTGAGA... .......... .......... .......... 418 GACACATAAA AATTGAGAAG GGAGAGTGAA TGCTTACTAA ATCGTCACTT CATCAAAAGG 41405 .......... .......... .......... .......... .......... .......... 418 ATAAATATAC CACCAACTAT CATAAATGGT ATGTGTTAGA CCCGTAAACT ATTTGATCTA 41345 .......... .......... .......... .......... .......... .......... 418 ACTACGTGCA GACATGTCAA GATCTTAGGC ATTGGTCTTG ACATGGATGA GGGCAAAACA 41285 .......... .......... .......... .......... .......... .......... 418 GTGCAACACA AGTTCAAGAT GCTTGAGTGT TGGCAAGGCA GCTTGAATGT GCAAGGCTTA 41225 .......... .......... .......... .......... .......... .......... 418 CGTGCGGGCT AGAGTCATTG GCAAGACAGC GTGTTGGCTT GACAAGGCAA AGCTGTGAAG 41165 .......... .......... .......... .......... .......... .......... 418 ACTTGATAAT GGCAAGAACA AAGGCAGTTC GCGTGAATTG CTGAAATAAA ACTAAGTGTT 41105 .......... .......... .......... .......... .......... .......... 418 GGAGGACAGC TAAAATATTC TAAGTGTTGG AAGCTGACTG AAATATTCTA AGTGTTAGAA 41045 .......... .......... .......... .......... .......... .......... 418 TATTAGTATT TCGTGTAGAT AAGAATGTAA TTTGAATTAG ATTTTATCTG TTAGAAATAT 40985 .......... .......... .......... .......... .......... .......... 418 AGCTGTTGGA AACTTAGTTT GAACCCTGTG ATGACAAGTG TCGGACATGT GTCATTTGTA 40925 .......... .......... .......... .......... .......... .......... 418 ACTGCCGCAT GTAACTGCCA TGTGCAGAAA TTTTATTAAG GGTGAAAATT CGTCTAAGGT 40865 .......... .......... .......... .......... .......... .......... 418 TGGGAGAGTG TTTTCTAGCC ATAGACAAAT TCGTGAAGCT TTCCTTTATA TTAATTATCA 40805 .......... .......... .......... .......... .......... .......... 418 GATTAATAAA GGTTGGGACG AGTTCCTGTA AAGTCTGTTT GTTGTTTAAC TTTGCTGTTA 40745 .......... .......... .......... .......... .......... .......... 418 AAATATTTCT ATACTTAGTC AATTTCGTGG GTGTAAATAG GCTGAGTGTT ACAGACGTTT 40685 .......... .......... .......... .......... .......... .......... 418 GTAAGACTGC CTAGGGTGGT GTTCGGTAAA ATAAATCGAC CATCTTTCAG TATGCAAGTA 40625 .......... .......... .......... .......... .......... .......... 418 TCATCCGTCA TATTTTGGGA CATTAGTGCT GCTGCCATTC AAAAACTAAA ACATATATAG 40565 .......... .......... .......... .......... .......... .......... 418 TCTTATACTA ACGGACATAT ACGTATCATA ATCTTATCCA CCGATCCGAC ATTTATCAAC 40505 .......... .......... .......... .......... .......... .......... 418 GGGTAAAATT GTGTCACGTG TCCCAATTTA GTCTTCAGTT AGTGTAAAGA ACATATTTGC 40445 .......... .......... .......... .......... .......... .......... 418 TCTAGCTTTT GGACAGCAGG GGCACCAATG TTCCAAAGAT ATCTATATAC CATTTACGAT 40385 .......... .......... .......... .......... .......... .......... 418 AGTTCGAAGG TGTATTTGTT CTTTTCTCGT TAAGCTAAGC GGAATTTTTG GCAAATTTTA 40325 .......... .......... .......... .......... .......... .......... 418 GTATATCCTG GAGAGTAAAA TTATTTCAAT CACTAAACAA TTAGTATGAC TTTTTAATAA 40265 .......... .......... .......... .......... .......... .......... 418 AAAATTATCA ATAATTGGCC TTCTAAATAA GGTGGTTAGT TAAGACCAAA TCATTTATTA 40205 .......... .......... .......... .......... .......... .......... 418 ATTCTAAACT ATTTTTTCAA TATATTTCTA CAAAATCTTT GCTTTTAGGA CTTCAAAGGC 40145 .......... .......... .......... .......... .......... .......... 418 ACGCAGCCCC CGCACTCTCC ATTAAATAAC TTTATTTAGA AGTATTTGAG TCGTGAAAAT 40085 .......... .......... .......... .......... .......... .......... 418 AGTCATTAAT TTTTGCATAA GGATATATCA TATTTGCAGA AAAAGCTTGT ATTATGATAA 40025 .......... .......... .......... .......... .......... .......... 418 ATTGTCAACA TCACATGTCA TACAAAGCAA AAAATAAATA AAATATACAA AGCAAAAAAA 39965 .......... .......... .......... .......... .......... .......... 418 AAATATACAA AGAATTATTA ATTTTTTTTT ACAAAAAAAG AGTAAATATT ACGTGGCAGC 39905 .......... .......... .......... .......... .......... .......... 418 GTATATAGAC CATTGCCTAA TACAAATCTG AGCGTGAATT TATAGGGGGC TAGATATTTT 39845 .......... .......... .......... .......... .......... .......... 418 ACATTTAAAA AGTTCACAGG GGTGATAGGA CCTCCGTAAA GAATAAGTGT GTAGTTGGGA 39785 .......... .......... .......... .......... .......... .......... 418 ATTTAAGCTT AGGGGGACTT TTGGCCATTT TCTCTTTAAA ATAGTCATAA TAATCACATA 39725 .......... .......... .......... .......... .......... .......... 418 ATCTCCCATA TAAAAGTTTC AAATATTTAC CATTAAAA 39687 || | || ||| ||| | | ||||| .......... ..AATATATC AAACTTTTTC C-GTAAAA 443 hqPGS_C08HBa0037O11.1-_SGN-E542827+ (41992 41636,41589 41563,41525 41498) ******************************************************************************** EST sequence 6 -strand 741 n (File: SGN-E371396-) 1 TAGATCATGG CATTTAGTTT AAGGTTCCTA GCTCGGAATC TTTGGTCTGT CTGAGTCNTC 61 AGTAACAGCT TGGTTGTATA CATTGAAATT TTGTGGACTG TTTCTGTTAG ACCCGCAATC 121 TACTTGATCT AACTACGTGC AGACATGCCA AGGACTTGGG CATTGGTCTT GGCATGGATG 181 ATGGCAAAAC AGTGCAACAC AAGTTCAAGG TGCTTGGGTG TTGGCAAGGC AGCTTGAACG 241 TGCATGGCTT ACGTGCGGGC TAAGGGCGTT GACAAGACAA CATGTTGACT TGATGAAGCA 301 AGGCTGTGAA GACTTGGCAA GGTCAAAGAC AAAGGCAGTT CACCCGAAAT TGCTGAAATA 361 AAACTAAGTG TGGAAGACAG CTAAAATATT CTAAGTGTTG GAAGCTGGCA GGATTATTCT 421 AAGTGTTGGA ATGAAGCCTG AAATATTCTA AGTGTTAGAA TATTAGTATT TCGTGTAGAT 481 AAGAATGTAA TTTGAATTAG ATTCTATCTG TTGGAAATAT AGTTGTTGGA AAGTTAGTTT 541 TGAACCCTGG GCTGACATGT GTCGGACAGG TGTCATGTGT AACCGCTTGT AACTGCCATT 601 GTGCAGAATT TTGATTTAAG GTGGAAATTC GTCTAAAGCA GAGGACAGAG AGTTTTCTAG 661 CCTTAGACTG ATTTGTGAAG TCTTCCTTTG TATTAATTAT TGATTAATAA AGGTTGAGAC 721 TTGGTCCTGT AAAAAAAAAA A Predicted gene structure (within gDNA segment 43723 to 38022): Exon 1 42209 42202 ( 8 n); cDNA 95 102 ( 8 n); score: 0.750 Intron 1 42201 41374 ( 828 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 41373 40773 ( 601 n); cDNA 103 733 ( 631 n); score: 0.735 MATCH C08HBa0037O11.1- SGN-E371396- 0.735 609 0.822 C PGS_C08HBa0037O11.1-_SGN-E371396- (42209 42202,41373 40773) Alignment (genomic DNA sequence = upper lines): GGTCTGATAT ATCCCTCAAC TTTGTTATTT AGAGCTGATA TACCCCTCGT TATAAAAGTG 42150 || ||| | GGACTGTT.. .......... .......... .......... .......... .......... 102 GCTCATATAT ACCCCTACTT GTAAACAAAT GGCCCACATA TACCCTTTTC CTCTAACGGA 42090 .......... .......... .......... .......... .......... .......... 102 AATGAAAAAA ATAATAATTT TAATCTAAAT TTTTATTATT TTTTTCTAAA AAATATAATC 42030 .......... .......... .......... .......... .......... .......... 102 CCATATGAGT AAATTTAATT CTTGTCAAAC ATATTTTTTT TGACTTTTTT TGTTTTAATG 41970 .......... .......... .......... .......... .......... .......... 102 ACTAATTTAT AACTATTATT TTGATAATCA AATTTATTTA TGTTTCACTA ATATTCTTGT 41910 .......... .......... .......... .......... .......... .......... 102 AAAACTTATT ATAGATGACC AAATTTTTTC TTCGAATACG AAATTAAATT ACAATACACA 41850 .......... .......... .......... .......... .......... .......... 102 CAAAAAAAAT AGTTTAAATT TTTTTTTAAA ACTAAGGAAT GAAAGAAAAA ACAAGAAACT 41790 .......... .......... .......... .......... .......... .......... 102 CAAATAATTA TAATAAAAGA AGTCAAAAAA TAATTTATGT ATGAAAAAAA TTAAAATATA 41730 .......... .......... .......... .......... .......... .......... 102 CCTTAAACTT TGATAAAAGA ATCATATATA CCCCTAAATA ATTTTTTTAA AAAAAATTAG 41670 .......... .......... .......... .......... .......... .......... 102 AAGTAACAAA TATAAATTTA AAACTAATTT TTTAATTTCC GTTAAATAAA GGGTATATGT 41610 .......... .......... .......... .......... .......... .......... 102 GAGCCATTTT GTAACGGCAG GGGTATATGT GAGCCGTTTG TATAACGGTA AGGGCATATA 41550 .......... .......... .......... .......... .......... .......... 102 TGAGCCATTT TTATAACGAG GGGTATATCA GCTCTAAATG ACAAAGTTGA GGGTATATCA 41490 .......... .......... .......... .......... .......... .......... 102 GACCCTTTTC CCTTCTTCTT TTTTTGACAC ATAAAAATTG AGAAGGGAGA GTGAATGCTT 41430 .......... .......... .......... .......... .......... .......... 102 ACTAAATCGT CACTTCATCA AAAGGATAAA TATACCACCA ACTATCATAA ATGGTATGTG 41370 | || .......... .......... .......... .......... .......... ......TCTG 106 TTAGACCCGT AAACTATTTG ATCTAACTAC GTGCAGACAT GTCAAGATCT TAGGCATTGG 41310 ||||||||| || ||| ||| |||||||||| |||||||||| | |||| || | |||||||| TTAGACCCGC AATCTACTTG ATCTAACTAC GTGCAGACAT GCCAAGGACT TGGGCATTGG 166 TCTTGACATG GATGAGGGCA AAACAGTGCA ACACAAGTTC AAGATGCTTG AGTGTTGGCA 41250 ||||| |||| ||||| |||| |||||||||| |||||||||| ||| |||||| ||||||||| TCTTGGCATG GATGATGGCA AAACAGTGCA ACACAAGTTC AAGGTGCTTG GGTGTTGGCA 226 AGGCAGCTTG AATGTGCAAG GCTTACGTGC GGGCTAGAGT CATTGGCAAG ACAGCGTGTT 41190 |||||||||| || ||||| | |||||||||| |||||| | | ||| |||| ||| | |||| AGGCAGCTTG AACGTGCATG GCTTACGTGC GGGCTAAGGG CGTTGACAAG ACAACATGTT 286 GGCTTGACAA GGCAAAGCTG TGAAGACTTG ATAATGGCAA GAACAAAGGC AGTTCGCGTG 41130 | ||||| | |||| |||| |||||||||| || | ||| |||||||| ||||| | | GACTTGATGA AGCAAGGCTG TGAAGACTTG GCAAGGTCAA AGACAAAGGC AGTTCACCCG 346 -AATTGCTGA AATAAAACTA AGTGTTGGAG GACAGCTAAA ATATTCTAAG TGTTGG-A-- 41074 ||||||||| |||||||||| |||| |||| |||||||||| |||||||||| |||||| | AAATTGCTGA AATAAAACTA AGTG-TGGAA GACAGCTAAA ATATTCTAAG TGTTGGAAGC 405 ----A-G--- ---C------ ------TG-A --CTGAAATA TTCTAAGTGT TAGAATATTA 41040 | | | || | |||||||| |||||||||| |||||||||| TGGCAGGATT ATTCTAAGTG TTGGAATGAA GCCTGAAATA TTCTAAGTGT TAGAATATTA 465 GTATTTCGTG TAGATAAGAA TGTAATTTGA ATTAGATTTT ATCTGTTAGA AATATAGCTG 40980 |||||||||| |||||||||| |||||||||| |||||||| | ||||||| || ||||||| || GTATTTCGTG TAGATAAGAA TGTAATTTGA ATTAGATTCT ATCTGTTGGA AATATAGTTG 525 TTGGAAACTT AG-TTTGAAC CCTGTGATGA CAAGTGTCGG ACATGTGTCA TTTGTAACTG 40921 ||||||| || || ||||||| |||| | ||| || ||||||| ||| |||||| | ||||| TTGGAAAGTT AGTTTTGAAC CCTGGGCTGA CATGTGTCGG ACAGGTGTCA TGTGTAA--- 582 CCGCATGTAA CTGCCA-TGT GCAGAAATTT TATTAAGGGT GAAAATTCGT CTAAGGTTG- 40863 |||| ||||| |||||| ||| |||||| ||| ||| | ||| | |||||||| |||| | | CCGCTTGTAA CTGCCATTGT GCAGAATTTT GATTTAAGGT GGAAATTCGT CTAAAGCAGA 642 GG--AGAGTG TTTTCTAGCC ATAGACAAAT TCGTGAAGCT TTCCTTTATA TTAATTATCA 40805 || |||| | |||||||||| ||||| || | |||||| ||||||| || |||||||| GGACAGAGAG TTTTCTAGCC TTAGACTGAT TTGTGAAGTC TTCCTTTGTA TTAATTAT-T 701 GATTAATAAA GGTTGGGACG AGTTCCTGTA AA 40773 |||||||||| ||||| ||| | ||||||| || GATTAATAAA GGTTGAGACT TGGTCCTGTA AA 733 hqPGS_C08HBa0037O11.1-_SGN-E371396- (41373 40773) ******************************************************************************** EST sequence 70 -strand 791 n (File: SGN-E543846-) 1 TCTTTCCCTG ATTATAAATA ATACTACAAG CAGTTTGAGG ATGCCCTAAT AGATCATTGG 61 CATTAGTTTA AGGTTCCTAG CTCGGAATCT TTGGTCTGTC TGAGTCCTCA GTAACAGCTT 121 GGTTGTATAC ATTGAAATTT TGTGGACTGT TTCTGTTAGA CCCGCAATCT ACTTGATCTA 181 ACTACGTGCA GACATGCCAA GGACTTGGGC ATTGGTCTTG GCATGGATGA TGGCAAAACA 241 GTGCAACACA AGTTCAAGGT GCTTGGGTGT TGGCAAGGCA GCTTGAACGT GCATGGCTTA 301 CGTGCGGGCT AAGGGCGTTG ACAAGACAAC ATGTTGACTT GATGAAGCAA GGCTGTGAAG 361 ACTTGGCAAG GTCAAAGACA AAGGCAGTTC ACCCGAAATT GCTGAAATAA AACTAAGTGT 421 GGAAGACAGC TAAAATATTC TAAGTGTTGG AAGCTGGCAG GATTATTCTA AGTGTTGGAA 481 TGAAGCCTGA AATATTCTAA GTGTTAGAAT ATTAGTATTT CGTGTAGATA AGAATGTAAT 541 TTGAATTAGA TTCTATCTGT TGGAAATATA GTTGTTGGAA AGTTAGTTTT GAACCCTGGG 601 CTGACATGTG TCGGACAGGT GTCATGTGTA ACCGCTTGTA ACTGCCATTG TGCAGAATTT 661 TGATTTAAGG TGGAAATTCG TCTAAAGCAG AGGACAGAGA GTTTTCTAGC CTTAGACTGA 721 TTTGTGAAGT CTTCCTTTGT ATTAATTATT GATTAATAAA GGTTGAGACT TGGTCCTGTA 781 AAAAAAAAAA A Predicted gene structure (within gDNA segment 44213 to 38012): Exon 1 42209 42202 ( 8 n); cDNA 144 151 ( 8 n); score: 0.750 Intron 1 42201 41374 ( 828 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 41373 40773 ( 601 n); cDNA 152 782 ( 631 n); score: 0.735 MATCH C08HBa0037O11.1- SGN-E543846- 0.735 609 0.770 C PGS_C08HBa0037O11.1-_SGN-E543846- (42209 42202,41373 40773) Alignment (genomic DNA sequence = upper lines): GGTCTGATAT ATCCCTCAAC TTTGTTATTT AGAGCTGATA TACCCCTCGT TATAAAAGTG 42150 || ||| | GGACTGTT.. .......... .......... .......... .......... .......... 151 GCTCATATAT ACCCCTACTT GTAAACAAAT GGCCCACATA TACCCTTTTC CTCTAACGGA 42090 .......... .......... .......... .......... .......... .......... 151 AATGAAAAAA ATAATAATTT TAATCTAAAT TTTTATTATT TTTTTCTAAA AAATATAATC 42030 .......... .......... .......... .......... .......... .......... 151 CCATATGAGT AAATTTAATT CTTGTCAAAC ATATTTTTTT TGACTTTTTT TGTTTTAATG 41970 .......... .......... .......... .......... .......... .......... 151 ACTAATTTAT AACTATTATT TTGATAATCA AATTTATTTA TGTTTCACTA ATATTCTTGT 41910 .......... .......... .......... .......... .......... .......... 151 AAAACTTATT ATAGATGACC AAATTTTTTC TTCGAATACG AAATTAAATT ACAATACACA 41850 .......... .......... .......... .......... .......... .......... 151 CAAAAAAAAT AGTTTAAATT TTTTTTTAAA ACTAAGGAAT GAAAGAAAAA ACAAGAAACT 41790 .......... .......... .......... .......... .......... .......... 151 CAAATAATTA TAATAAAAGA AGTCAAAAAA TAATTTATGT ATGAAAAAAA TTAAAATATA 41730 .......... .......... .......... .......... .......... .......... 151 CCTTAAACTT TGATAAAAGA ATCATATATA CCCCTAAATA ATTTTTTTAA AAAAAATTAG 41670 .......... .......... .......... .......... .......... .......... 151 AAGTAACAAA TATAAATTTA AAACTAATTT TTTAATTTCC GTTAAATAAA GGGTATATGT 41610 .......... .......... .......... .......... .......... .......... 151 GAGCCATTTT GTAACGGCAG GGGTATATGT GAGCCGTTTG TATAACGGTA AGGGCATATA 41550 .......... .......... .......... .......... .......... .......... 151 TGAGCCATTT TTATAACGAG GGGTATATCA GCTCTAAATG ACAAAGTTGA GGGTATATCA 41490 .......... .......... .......... .......... .......... .......... 151 GACCCTTTTC CCTTCTTCTT TTTTTGACAC ATAAAAATTG AGAAGGGAGA GTGAATGCTT 41430 .......... .......... .......... .......... .......... .......... 151 ACTAAATCGT CACTTCATCA AAAGGATAAA TATACCACCA ACTATCATAA ATGGTATGTG 41370 | || .......... .......... .......... .......... .......... ......TCTG 155 TTAGACCCGT AAACTATTTG ATCTAACTAC GTGCAGACAT GTCAAGATCT TAGGCATTGG 41310 ||||||||| || ||| ||| |||||||||| |||||||||| | |||| || | |||||||| TTAGACCCGC AATCTACTTG ATCTAACTAC GTGCAGACAT GCCAAGGACT TGGGCATTGG 215 TCTTGACATG GATGAGGGCA AAACAGTGCA ACACAAGTTC AAGATGCTTG AGTGTTGGCA 41250 ||||| |||| ||||| |||| |||||||||| |||||||||| ||| |||||| ||||||||| TCTTGGCATG GATGATGGCA AAACAGTGCA ACACAAGTTC AAGGTGCTTG GGTGTTGGCA 275 AGGCAGCTTG AATGTGCAAG GCTTACGTGC GGGCTAGAGT CATTGGCAAG ACAGCGTGTT 41190 |||||||||| || ||||| | |||||||||| |||||| | | ||| |||| ||| | |||| AGGCAGCTTG AACGTGCATG GCTTACGTGC GGGCTAAGGG CGTTGACAAG ACAACATGTT 335 GGCTTGACAA GGCAAAGCTG TGAAGACTTG ATAATGGCAA GAACAAAGGC AGTTCGCGTG 41130 | ||||| | |||| |||| |||||||||| || | ||| |||||||| ||||| | | GACTTGATGA AGCAAGGCTG TGAAGACTTG GCAAGGTCAA AGACAAAGGC AGTTCACCCG 395 -AATTGCTGA AATAAAACTA AGTGTTGGAG GACAGCTAAA ATATTCTAAG TGTTGG-A-- 41074 ||||||||| |||||||||| |||| |||| |||||||||| |||||||||| |||||| | AAATTGCTGA AATAAAACTA AGTG-TGGAA GACAGCTAAA ATATTCTAAG TGTTGGAAGC 454 ----A-G--- ---C------ ------TG-A --CTGAAATA TTCTAAGTGT TAGAATATTA 41040 | | | || | |||||||| |||||||||| |||||||||| TGGCAGGATT ATTCTAAGTG TTGGAATGAA GCCTGAAATA TTCTAAGTGT TAGAATATTA 514 GTATTTCGTG TAGATAAGAA TGTAATTTGA ATTAGATTTT ATCTGTTAGA AATATAGCTG 40980 |||||||||| |||||||||| |||||||||| |||||||| | ||||||| || ||||||| || GTATTTCGTG TAGATAAGAA TGTAATTTGA ATTAGATTCT ATCTGTTGGA AATATAGTTG 574 TTGGAAACTT AG-TTTGAAC CCTGTGATGA CAAGTGTCGG ACATGTGTCA TTTGTAACTG 40921 ||||||| || || ||||||| |||| | ||| || ||||||| ||| |||||| | ||||| TTGGAAAGTT AGTTTTGAAC CCTGGGCTGA CATGTGTCGG ACAGGTGTCA TGTGTAA--- 631 CCGCATGTAA CTGCCA-TGT GCAGAAATTT TATTAAGGGT GAAAATTCGT CTAAGGTTG- 40863 |||| ||||| |||||| ||| |||||| ||| ||| | ||| | |||||||| |||| | | CCGCTTGTAA CTGCCATTGT GCAGAATTTT GATTTAAGGT GGAAATTCGT CTAAAGCAGA 691 GG--AGAGTG TTTTCTAGCC ATAGACAAAT TCGTGAAGCT TTCCTTTATA TTAATTATCA 40805 || |||| | |||||||||| ||||| || | |||||| ||||||| || |||||||| GGACAGAGAG TTTTCTAGCC TTAGACTGAT TTGTGAAGTC TTCCTTTGTA TTAATTAT-T 750 GATTAATAAA GGTTGGGACG AGTTCCTGTA AA 40773 |||||||||| ||||| ||| | ||||||| || GATTAATAAA GGTTGAGACT TGGTCCTGTA AA 782 hqPGS_C08HBa0037O11.1-_SGN-E543846- (41373 40773) ******************************************************************************** EST sequence 51 -strand 622 n (File: SGN-E542258-) 1 CAAAACAGTG CAACCCAGGT TCAAGGTGTT TGGGTGTTGG CAAGGCAACT TGAACATGCA 61 AGGCTTAAGT GCGGGCTAGA GTCATCGGCA AGGCAGCGTG TTGGCTTGAC AAGGCAAAAC 121 TGTGAAGACT TGACGATGGT AAGAACAAAG GCATTCCCCG TAAATTGCTG AAATAAAACC 181 AAGTGTTGGG GGACAACTAA AATATTTTAA GTGTTGGAAG CTGGCTGAAA TAATTTAAGT 241 GTTGGAATGT ACCCTGAAAT ATTTTAAGGG TTAAAATATT AATATTTCGG GGGGATAAGG 301 ATGTAATTTA AATTAGGGTC TTTTTGTTAG AAATATATTT GTTGGAAACT TAGTTTGAAT 361 CTTGGGATGA CAAGTGTCGG ACATGTGTCA TTTGTAACTG CCGCATGTAA CTCCCATGGG 421 CAGAAATTTT AATAAGGGGG GAAATTTTGT TTAAGGCTTA GAGGAGTGTG TTTTTTGGCC 481 TTAGACAAAT TCGGGAAGCC TTCCCTTTGT ATTAATTATC AGATTAATAA AGGTTGGACG 541 AGTTCCTTTA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 601 AAAAGAAAAA AAAAAACTCG AG Predicted gene structure (within gDNA segment 42513 to 38209): Exon 1 41291 40773 ( 519 n); cDNA 1 552 ( 552 n); score: 0.726 PPA cDNA 572 616 MATCH C08HBa0037O11.1- SGN-E542258- 0.726 519 0.834 C PGS_C08HBa0037O11.1-_SGN-E542258- (41291 40773) Alignment (genomic DNA sequence = upper lines): CAAAACAGTG CAACACAAGT TCAAGATGCT TGAGTGTTGG CAAGGCAGCT TGAATGTGCA 41232 |||||||||| |||| || || ||||| || | || ||||||| ||||||| || |||| |||| CAAAACAGTG CAACCCAGGT TCAAGGTGTT TGGGTGTTGG CAAGGCAACT TGAACATGCA 60 AGGCTTACGT GCGGGCTAGA GTCATTGGCA AGACAGCGTG TTGGCTTGAC AAGGCAAAGC 41172 ||||||| || |||||||||| ||||| |||| || ||||||| |||||||||| |||||||| | AGGCTTAAGT GCGGGCTAGA GTCATCGGCA AGGCAGCGTG TTGGCTTGAC AAGGCAAAAC 120 TGTGAAGACT TGATAATGGC AAGAACAAAG GCAGTTCGCG TGAATTGCTG AAATAAAACT 41112 |||||||||| ||| |||| |||||||||| ||| | | || | |||||||| ||||||||| TGTGAAGACT TGACGATGGT AAGAACAAAG GCATTCCCCG TAAATTGCTG AAATAAAACC 180 AAGTGTTGGA GGACAGCTAA AATATTCTAA GTGTTGGAAG CTGACTGAAA T-A--T---T 41058 ||||||||| ||||| |||| |||||| ||| |||||||||| ||| |||||| | | | | AAGTGTTGGG GGACAACTAA AATATTTTAA GTGTTGGAAG CTGGCTGAAA TAATTTAAGT 240 -CT--AA-G- ----TG---- ---TT-A--G ---A-ATATT AGTATTTCGT GTAGATAAGA 41021 | || | || || | | | ||||| | ||||||| | |||||| GTTGGAATGT ACCCTGAAAT ATTTTAAGGG TTAAAATATT AATATTTCGG GGGGATAAGG 300 ATGTAATTTG AATTAGATTT TATCTGTTAG AAATATAGCT GTTGGAAACT TAGTTTGAAC 40961 ||||||||| |||||| | | | |||||| ||||||| | |||||||||| ||||||||| ATGTAATTTA AATTAGGGTC TTTTTGTTAG AAATATATTT GTTGGAAACT TAGTTTGAAT 360 CCTGTGATGA CAAGTGTCGG ACATGTGTCA TTTGTAACTG CCGCATGTAA CTGCCATGTG 40901 | || ||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||| | CTTGGGATGA CAAGTGTCGG ACATGTGTCA TTTGTAACTG CCGCATGTAA CTCCCATGGG 420 CAGAAATTTT ATTAA-GGGT GAAAATTCGT CTAAGG-TT- G-GGAGAGTG TTTTCTAGCC 40845 |||||||||| | ||| ||| |||| || || ||||| || | |||| ||| |||| | ||| CAGAAATTTT AATAAGGGGG GAAATTTTGT TTAAGGCTTA GAGGAGTGTG TTTTTTGGCC 480 ATAGACAAAT TCGTGAAG-C TTTCCTTTAT ATTAATTATC AGATTAATAA AGGTTGGGAC 40786 ||||||||| ||| |||| | || ||||| | |||||||||| |||||||||| ||||| |||| TTAGACAAAT TCGGGAAGCC TTCCCTTTGT ATTAATTATC AGATTAATAA AGGTT-GGAC 539 GAGTTCCTGT AAA 40773 |||||||| | ||| GAGTTCCTTT AAA 552 hqPGS_C08HBa0037O11.1-_SGN-E542258- (41291 40773) ******************************************************************************** EST sequence 108 +strand 642 n (File: SGN-E250289+) 1 ACTGGCAGTT GACTTTGCTG AAGAAAAGTC TCTTCCAATG GATTGTCAAT TTCTCCTCAA 61 CAAGTGCTTT GTCTAATACA TTACACCAAG TTTGAGAAAA ACAAGATCCA GCGGATGAAA 121 ATACAACAAA AAAAGAGGCA GCGCTGGATT GTCAATTTCT CCTCAACAAT AGCTCTCTCT 181 AATACATTAG AGCAAGTTGA AGAAAATATA CATCAAGGAC TTGGGCATTG GTCTTGACAT 241 GAATGAGGGC AAAACAGTGC AACACAGGTT CAAGGTGTTT GGGTGTTGGC AAGGCAACTT 301 GAACATGCAA GGCTTAAGTG CGGGCTAGAG TCATCGGCAA GGCAGCGTGT TGGCTTGACA 361 AGGCAAAACT TGGTTGGNCA GACTTGACGA TGGTAAGAAC AAAGGCATTC ACGTAAATTG 421 CTGAAATAAA ACCAAGTGTT GGAGGACAAC TAAAATATTC TAAGTGTTGG AAGCTGGCTG 481 AAATAATCTA AGTGTTGGAA TGTAGCCTGA AATATTCTAA GTGTTAAAAT ATTAATATTT 541 CGTGTGGATA AGGATGTAAT TTAAATTAGA GTCTATCTGT TAGAAATATA TCTGTTGGAA 601 ACTTAGTTTG AATCTTGTGA TGACAAGTGT CGGACATGTG TC Predicted gene structure (within gDNA segment 44147 to 40322): Exon 1 41328 41044 ( 285 n); cDNA 213 501 ( 289 n); score: 0.861 MATCH C08HBa0037O11.1- SGN-E250289+ 0.861 285 0.444 C PGS_C08HBa0037O11.1-_SGN-E250289+ (41328 41044) Alignment (genomic DNA sequence = upper lines): TCAAGATCTT AGGCATTGGT CTTGACATGG ATGAGGGCAA AACAGTGCAA CACAAGTTCA 41269 ||||| ||| ||||||||| ||||||||| |||||||||| |||||||||| |||| ||||| TCAAGGACTT GGGCATTGGT CTTGACATGA ATGAGGGCAA AACAGTGCAA CACAGGTTCA 272 AGATGCTTGA GTGTTGGCAA GGCAGCTTGA ATGTGCAAGG CTTACGTGCG GGCTAGAGTC 41209 || || ||| |||||||||| |||| ||||| | ||||||| |||| ||||| |||||||||| AGGTGTTTGG GTGTTGGCAA GGCAACTTGA ACATGCAAGG CTTAAGTGCG GGCTAGAGTC 332 ATTGGCAAGA CAGCGTGTTG GCTTGACAAG GCAAAGC-T- G-T-GA-AGA CTTGATAATG 41154 || |||||| |||||||||| |||||||||| ||||| | | | | | ||| ||||| ||| ATCGGCAAGG CAGCGTGTTG GCTTGACAAG GCAAAACTTG GTTGGNCAGA CTTGACGATG 392 GCAAGAACAA AGGCAGTTCG CGTGAATTGC TGAAATAAAA CTAAGTGTTG GAGGACAGCT 41094 | |||||||| ||||| ||| ||| |||||| |||||||||| | |||||||| ||||||| || GTAAGAACAA AGGCA-TTCA CGTAAATTGC TGAAATAAAA CCAAGTGTTG GAGGACAACT 451 AAAATATTCT AAGTGTTGGA AGCTGACTGA AATATTCTAA GTGTTAGAAT 41044 |||||||||| |||||||||| ||||| |||| |||| ||||| ||||| |||| AAAATATTCT AAGTGTTGGA AGCTGGCTGA AATAATCTAA GTGTTGGAAT 501 hqPGS_C08HBa0037O11.1-_SGN-E250289+ (41328 41044) ******************************************************************************** EST sequence 110 +strand 292 n (File: SGN-E213783+) 1 CGCAATCTAC TTGATCTAAC TACGTGCAGA CATGCCAAGG ACTTGGGCAT TGGTCTTGGC 61 ATGGATGATG GCAAAACAGT GCAACACAAG TTCAAGGTGC TTGGGTGTTG GCAAGGCAGC 121 TTGAACGTGC ATGGCTTACG TGCGGGCTAA GGGCGTTGAC AAGACAACAT GTTGACTTGA 181 TGAAGCAAGG CTGTGAAGAC TTGGCAAGGG CAAAAAAAAA AGCAGTTCAC CCCAAATTGC 241 TGAAATAAAA CTAAGTGGGG AAAAAAGCTA AAATATTCCA AATGGTGGAA AC Predicted gene structure (within gDNA segment 42583 to 39174): Exon 1 41362 41073 ( 290 n); cDNA 1 290 ( 290 n); score: 0.843 MATCH C08HBa0037O11.1- SGN-E213783+ 0.843 290 0.993 C PGS_C08HBa0037O11.1-_SGN-E213783+ (41362 41073) Alignment (genomic DNA sequence = upper lines): CGTAAACTAT TTGATCTAAC TACGTGCAGA CATGTCAAGA TCTTAGGCAT TGGTCTTGAC 41303 || || ||| |||||||||| |||||||||| |||| |||| ||| ||||| |||||||| | CGCAATCTAC TTGATCTAAC TACGTGCAGA CATGCCAAGG ACTTGGGCAT TGGTCTTGGC 60 ATGGATGAGG GCAAAACAGT GCAACACAAG TTCAAGATGC TTGAGTGTTG GCAAGGCAGC 41243 |||||||| | |||||||||| |||||||||| |||||| ||| ||| |||||| |||||||||| ATGGATGATG GCAAAACAGT GCAACACAAG TTCAAGGTGC TTGGGTGTTG GCAAGGCAGC 120 TTGAATGTGC AAGGCTTACG TGCGGGCTAG AGTCATTGGC AAGACAGCGT GTTGGCTTGA 41183 ||||| |||| | |||||||| ||||||||| | | ||| | |||||| | | |||| ||||| TTGAACGTGC ATGGCTTACG TGCGGGCTAA GGGCGTTGAC AAGACAACAT GTTGACTTGA 180 CAAGGCAAAG CTGTGAAGAC TTGATAATGG CAAGAACAAA GGCAGTTC-G CGTGAATTGC 41124 | |||| | |||||||||| ||| || || ||| || ||| ||||||| | |||||| TGAAGCAAGG CTGTGAAGAC TTGGCAAGGG CAAAAAAAAA AGCAGTTCAC CCCAAATTGC 240 TGAAATAAAA CTAAGTGTTG GAGGACAGCT AAAATATTCT AAGTGTTGGA A 41073 |||||||||| ||||||| | || | |||| ||||||||| || || |||| | TGAAATAAAA CTAAGTG-GG GAAAAAAGCT AAAATATTCC AAATGGTGGA A 290 hqPGS_C08HBa0037O11.1-_SGN-E213783+ (41362 41073) ******************************************************************************** EST sequence 99 +strand 662 n (File: SGN-E371397+) 1 CTCGTGCCGG CTTAATCCAA TCTTGGTAGC ATCCCTCATT CCTTGAGAAT GAATCTGTTT 61 GAGTATCAAG TCGAGAAACG AAAGGAGAAA TAGACAGCTT TTCTTTTCCA GGTCATCTTC 121 TTTTCTCATT GTTCTTTGGA TGTTCAACAA TTTATAGCAG GAGTAGACTG TCCTTTTTTA 181 CTTTCCACAT AGCTTATCTG TTTCATCCAT GCTTCCTCTG TTTAGAGTTT CCTCTTTCCC 241 TGATTATAAA TAATACTACA AGCAGTTTGA GGATGCCCTA ATAGATCATT GGCATTAGTT 301 TAAGGTTCCT AGCTCGGAAT CTTTGGTCTG TCTGAGTCCT CAGTAACAGC TTGGTTGTAT 361 ACATTGAAAT TTTGTGGACT GTTTCTGTTA GACCCGCAAT CTACTTGATC TAACTACGTG 421 CAGACATGCC AAGGACTTGG GCATTGGTCT TGGCATGGAT GATGGCAAAA CAGTGCAACA 481 CAAGTTCAAG GTGCTTGGGT GTTGGCAAGG CAGCTTGAAC GTGCATGGCT TACGTGCGGG 541 CTAAGGGCGT TGACAAGACA ACATGTTGAC TTGATGAAGC AAGGCTGTGA AGACTTGGCA 601 AGGTCAAAGA CAAAGGCAGT TCACCCGAAA TTGCTGGAAT AAAACTAAGT GTGGAAGACA 661 GC Predicted gene structure (within gDNA segment 46523 to 39414): Exon 1 42209 42202 ( 8 n); cDNA 376 383 ( 8 n); score: 0.750 Intron 1 42201 41374 ( 828 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 41373 41095 ( 279 n); cDNA 384 662 ( 279 n); score: 0.855 MATCH C08HBa0037O11.1- SGN-E371397+ 0.855 287 0.434 C PGS_C08HBa0037O11.1-_SGN-E371397+ (42209 42202,41373 41095) Alignment (genomic DNA sequence = upper lines): GGTCTGATAT ATCCCTCAAC TTTGTTATTT AGAGCTGATA TACCCCTCGT TATAAAAGTG 42150 || ||| | GGACTGTT.. .......... .......... .......... .......... .......... 383 GCTCATATAT ACCCCTACTT GTAAACAAAT GGCCCACATA TACCCTTTTC CTCTAACGGA 42090 .......... .......... .......... .......... .......... .......... 383 AATGAAAAAA ATAATAATTT TAATCTAAAT TTTTATTATT TTTTTCTAAA AAATATAATC 42030 .......... .......... .......... .......... .......... .......... 383 CCATATGAGT AAATTTAATT CTTGTCAAAC ATATTTTTTT TGACTTTTTT TGTTTTAATG 41970 .......... .......... .......... .......... .......... .......... 383 ACTAATTTAT AACTATTATT TTGATAATCA AATTTATTTA TGTTTCACTA ATATTCTTGT 41910 .......... .......... .......... .......... .......... .......... 383 AAAACTTATT ATAGATGACC AAATTTTTTC TTCGAATACG AAATTAAATT ACAATACACA 41850 .......... .......... .......... .......... .......... .......... 383 CAAAAAAAAT AGTTTAAATT TTTTTTTAAA ACTAAGGAAT GAAAGAAAAA ACAAGAAACT 41790 .......... .......... .......... .......... .......... .......... 383 CAAATAATTA TAATAAAAGA AGTCAAAAAA TAATTTATGT ATGAAAAAAA TTAAAATATA 41730 .......... .......... .......... .......... .......... .......... 383 CCTTAAACTT TGATAAAAGA ATCATATATA CCCCTAAATA ATTTTTTTAA AAAAAATTAG 41670 .......... .......... .......... .......... .......... .......... 383 AAGTAACAAA TATAAATTTA AAACTAATTT TTTAATTTCC GTTAAATAAA GGGTATATGT 41610 .......... .......... .......... .......... .......... .......... 383 GAGCCATTTT GTAACGGCAG GGGTATATGT GAGCCGTTTG TATAACGGTA AGGGCATATA 41550 .......... .......... .......... .......... .......... .......... 383 TGAGCCATTT TTATAACGAG GGGTATATCA GCTCTAAATG ACAAAGTTGA GGGTATATCA 41490 .......... .......... .......... .......... .......... .......... 383 GACCCTTTTC CCTTCTTCTT TTTTTGACAC ATAAAAATTG AGAAGGGAGA GTGAATGCTT 41430 .......... .......... .......... .......... .......... .......... 383 ACTAAATCGT CACTTCATCA AAAGGATAAA TATACCACCA ACTATCATAA ATGGTATGTG 41370 | || .......... .......... .......... .......... .......... ......TCTG 387 TTAGACCCGT AAACTATTTG ATCTAACTAC GTGCAGACAT GTCAAGATCT TAGGCATTGG 41310 ||||||||| || ||| ||| |||||||||| |||||||||| | |||| || | |||||||| TTAGACCCGC AATCTACTTG ATCTAACTAC GTGCAGACAT GCCAAGGACT TGGGCATTGG 447 TCTTGACATG GATGAGGGCA AAACAGTGCA ACACAAGTTC AAGATGCTTG AGTGTTGGCA 41250 ||||| |||| ||||| |||| |||||||||| |||||||||| ||| |||||| ||||||||| TCTTGGCATG GATGATGGCA AAACAGTGCA ACACAAGTTC AAGGTGCTTG GGTGTTGGCA 507 AGGCAGCTTG AATGTGCAAG GCTTACGTGC GGGCTAGAGT CATTGGCAAG ACAGCGTGTT 41190 |||||||||| || ||||| | |||||||||| |||||| | | ||| |||| ||| | |||| AGGCAGCTTG AACGTGCATG GCTTACGTGC GGGCTAAGGG CGTTGACAAG ACAACATGTT 567 GGCTTGACAA GGCAAAGCTG TGAAGACTTG ATAATGGCAA GAACAAAGGC AGTTCGCGTG 41130 | ||||| | |||| |||| |||||||||| || | ||| |||||||| ||||| | | GACTTGATGA AGCAAGGCTG TGAAGACTTG GCAAGGTCAA AGACAAAGGC AGTTCACCCG 627 -AATTGCTGA AATAAAACTA AGTGTTGGAG GACAGC 41095 |||||||| |||||||||| |||| |||| |||||| AAATTGCTGG AATAAAACTA AGTG-TGGAA GACAGC 662 hqPGS_C08HBa0037O11.1-_SGN-E371397+ (41373 41095) ******************************************************************************** EST sequence 122 +strand 477 n (File: SGN-E297757+) 1 GAGGGAAAAG TCTCTTCCAA TGGATTGTCA ATTTCTCCTC GGCAGGTGCC TTTGTCTAAT 61 ACATTACACC CAAGTTTGAG AAAAACAAGA TCCAGCGGAT GAAAATACCA ACAAAAAAAG 121 AGGCAGCGCT GGATTGTCAA TTTCTCCTCA ACCAATAGCT CTCTCTAATA CCATTAGAGC 181 AAGTTGAAGA AAATATACCA TCAAGTTAAA AGTGGAAGGA AGAACCGAGA GAACAAAGAA 241 CCAGACCTTT TTTTAAATCT CCATCTGTTA GACTCGTAAA TTACCTTGAT CTAATTACCG 301 TACCAAACCA TGTCAAGGAC CTTGGGCATT GGTCTTGACA TGAATGAGGG CAAAACAGTG 361 CAACACAGGT TCAAGGTGTT TGGGTGTTGG CAAGGCAACT TGAACATGCC AGGCTTAAGT 421 GCGGGCTAGA GTCATCGGCA AGGCAGCGTG TTGGCTTGAC AAGGCAAAAC TGTGAAG Predicted gene structure (within gDNA segment 45157 to 40474): Exon 1 41374 41165 ( 210 n); cDNA 263 477 ( 215 n); score: 0.836 MATCH C08HBa0037O11.1- SGN-E297757+ 0.836 210 0.440 C PGS_C08HBa0037O11.1-_SGN-E297757+ (41374 41165) Alignment (genomic DNA sequence = upper lines): ATGTGTTAGA CCCGTAAACT A-TTTGATCT AACTA-CGTG C-AGA-CATG TCAAG-ATCT 41320 || ||||||| | |||||| | | ||||||| || || ||| | | | |||| ||||| | || ATCTGTTAGA CTCGTAAATT ACCTTGATCT AATTACCGTA CCAAACCATG TCAAGGACCT 322 TAGGCATTGG TCTTGACATG GATGAGGGCA AAACAGTGCA ACACAAGTTC AAGATGCTTG 41260 | |||||||| |||||||||| ||||||||| |||||||||| ||||| |||| ||| || ||| TGGGCATTGG TCTTGACATG AATGAGGGCA AAACAGTGCA ACACAGGTTC AAGGTGTTTG 382 AGTGTTGGCA AGGCAGCTTG AATGTGCAAG GCTTACGTGC GGGCTAGAGT CATTGGCAAG 41200 ||||||||| ||||| |||| || ||| || ||||| |||| |||||||||| ||| |||||| GGTGTTGGCA AGGCAACTTG AACATGCCAG GCTTAAGTGC GGGCTAGAGT CATCGGCAAG 442 ACAGCGTGTT GGCTTGACAA GGCAAAGCTG TGAAG 41165 ||||||||| |||||||||| |||||| ||| ||||| GCAGCGTGTT GGCTTGACAA GGCAAAACTG TGAAG 477 hqPGS_C08HBa0037O11.1-_SGN-E297757+ (41374 41165) ******************************************************************************** EST sequence 113 +strand 460 n (File: SGN-E243215+) 1 TTATTGTAGA TGACCAATTT TTTCTTCGAA TACGAAATTA AATTACAATA CACACAAAAA 61 AAATATTTGA ATTTTTTTTA TTTAAACTAA GGAATGAAAG AAAAAAACAA AATAAGAATA 121 AGAAACTCAA ATTATTATAA TAAAAGAAGT CAAAAAATAA TTTTTGTATG AAAAAATTAA 181 AATATACCTT GAACTTTGAT AGAAGAATCA TATATATCCC TAAATATTTT TTTTAAAAAA 241 AAATTAGAAG TAACAAATAT AAATTTAAAA CTAATTTTTT AACTTTCGTT AAATGAAGGG 301 TATATGTGAG CCATTTTCTA ACGGCAGGGG TATATGTGAG CCGTTTGTAT AACGATAAGG 361 GCATATATGA ACCACTTTTA TTACGAGGGA TATATCAGCT CTAAATGACA AAGTTGAGAG 421 GTATATCAGA CCCTTTTCCC TATTTTTTAA AATTTCATAC Predicted gene structure (within gDNA segment 42638 to 40677): Exon 1 41904 41461 ( 444 n); cDNA 1 457 ( 457 n); score: 0.846 MATCH C08HBa0037O11.1- SGN-E243215+ 0.846 444 0.965 C PGS_C08HBa0037O11.1-_SGN-E243215+ (41904 41461) Alignment (genomic DNA sequence = upper lines): TTATTATAGA TGACCAAATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 41845 ||||| |||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGTAGA TGACC-AATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 59 AAAATAGTTT AAATTTTTTT -TTAAAACTA AGGAATGAAA G-AAAAAAC- -AA------- 41796 |||||| || || ||||||| || |||||| |||||||||| | ||||||| || AAAATATTTG AATTTTTTTT ATTTAAACTA AGGAATGAAA GAAAAAAACA AAATAAGAAT 119 --GAAACTCA AATAATTATA ATAAAAGAAG TCAAAAAATA ATTTATGTAT GAAAAAAATT 41738 |||||||| ||| |||||| |||||||||| |||||||||| |||| ||||| | |||||||| AAGAAACTCA AATTATTATA ATAAAAGAAG TCAAAAAATA ATTTTTGTAT G-AAAAAATT 178 AAAATATACC TTAAACTTTG ATAAAAGAAT CATATATACC CCTAAATAAT TTTTTT-AAA 41679 |||||||||| || ||||||| ||| |||||| |||||||| | |||||||| | |||||| ||| AAAATATACC TTGAACTTTG ATAGAAGAAT CATATATATC CCTAAATATT TTTTTTAAAA 238 AAAAATTAGA AGTAACAAAT ATAAATTTAA AACTAATTTT TTAATTTCCG TTAAATAAAG 41619 |||||||||| |||||||||| |||||||||| |||||||||| |||| || || |||||| ||| AAAAATTAGA AGTAACAAAT ATAAATTTAA AACTAATTTT TTAACTTTCG TTAAATGAAG 298 GGTATATGTG AGCCATTTTG TAACGGCAGG GGTATATGTG AGCCGTTTGT ATAACGGTAA 41559 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GGTATATGTG AGCCATTTTC TAACGGCAGG GGTATATGTG AGCCGTTTGT ATAACGATAA 358 GGGCATATAT GAGCCATTTT TATAACGAGG GGTATATCAG CTCTAAATGA CAAAGTTGAG 41499 |||||||||| || ||| ||| ||| |||||| | |||||||| |||||||||| |||||||||| GGGCATATAT GAACCACTTT TATTACGAGG GATATATCAG CTCTAAATGA CAAAGTTGAG 418 -GGTATATCA GACCCTTTTC CCTTCTTCTT TTTTTGACA 41461 ||||||||| |||||||||| ||| || || | || AGGTATATCA GACCCTTTTC CCTATTTTTT AAAATTTCA 457 hqPGS_C08HBa0037O11.1-_SGN-E243215+ (41904 41461) ******************************************************************************** EST sequence 8 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 42400 to 36019): Exon 1 41790 41478 ( 313 n); cDNA 1 313 ( 313 n); score: 0.866 Intron 1 41477 38848 (2630 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0) Exon 2 38847 38828 ( 20 n); cDNA 314 332 ( 19 n); score: 0.800 MATCH C08HBa0037O11.1- SGN-E578389- 0.866 333 0.475 C PGS_C08HBa0037O11.1-_SGN-E578389- (41790 41478,38847 38828) Alignment (genomic DNA sequence = upper lines): TCAAATAATT ATAATAAAAG AAGTCA-AAA AATAATTTAT GTATGAAAAA AA-TTAAAAT 41733 |||||||||| ||||||| | |||||| ||| |||||||||| |||| ||||| || || |||| TCAAATAATT ATAATAA-AT AAGTCAAAAA AATAATTTAT GTATTAAAAA AATTTGAAAT 59 ATACCTTAAA CTTTGATAAA AGAATCATAT ATACCCCTAA ATAATTTTTT TAAAAAAAAT 41673 ||||||| || |||||| ||| |||||||||| || ||||||| || || |||| | ||||| ATACCTTGAA CTTTGAAAAA AGAATCATAT ATGCCCCTAA AT-ATATTTT TTTTTAAAAT 118 TAGAAGTAAC AAATATAAAT TTAAAACTAA TTTTTTAATT TCCGTTAAAT AAAGGGTATA 41613 || |||||| || ||||||| |||||| ||| |||||| | | | |||||||| ||||||||| TA-AAGTAA- AATTATAAAT TTAAAAGTAA TTTTTTCACT TTCGTTAAAT GAAGGGTATA 176 TGTGAGC-CA TTTTGTAACG GCAGGGGTAT ATGTGAGCCG TTTGTATAAC GGTAAGGGCA 41554 | ||||| || |||||||||| |||| ||||| |||||| || |||||||||| |||||||| | TATGAGCTCA TTTTGTAACG GCAGAGGTAT ATGTGAACCA TTTGTATAAC GGTAAGGGTA 236 TATATGAGCC ATTTTTATAA CGAGGGGTAT ATCAGCTCTA AATGACAAAG TTGA-GGGTA 41495 |||||||||| | ||| |||| |||||||||| ||||| | | |||||||||| |||| ||||| TATATGAGCC ACTTTCATAA CGAGGGGTAT ATCAGTTTCA AATGACAAAG TTGAGGGGTA 296 TATCAGACCC TTTTCCCTTC TTCTTTTTTT GACACATAAA AATTGAGAAG GGAGAGTGAA 41435 ||||| |||| ||||||| TATCATACCC TTTTCCC... .......... .......... .......... .......... 313 TGCTTACTAA ATCGTCACTT CATCAAAAGG ATAAATATAC CACCAACTAT CATAAATGGT 41375 .......... .......... .......... .......... .......... .......... 313 ATGTGTTAGA CCCGTAAACT ATTTGATCTA ACTACGTGCA GACATGTCAA GATCTTAGGC 41315 .......... .......... .......... .......... .......... .......... 313 ATTGGTCTTG ACATGGATGA GGGCAAAACA GTGCAACACA AGTTCAAGAT GCTTGAGTGT 41255 .......... .......... .......... .......... .......... .......... 313 TGGCAAGGCA GCTTGAATGT GCAAGGCTTA CGTGCGGGCT AGAGTCATTG GCAAGACAGC 41195 .......... .......... .......... .......... .......... .......... 313 GTGTTGGCTT GACAAGGCAA AGCTGTGAAG ACTTGATAAT GGCAAGAACA AAGGCAGTTC 41135 .......... .......... .......... .......... .......... .......... 313 GCGTGAATTG CTGAAATAAA ACTAAGTGTT GGAGGACAGC TAAAATATTC TAAGTGTTGG 41075 .......... .......... .......... .......... .......... .......... 313 AAGCTGACTG AAATATTCTA AGTGTTAGAA TATTAGTATT TCGTGTAGAT AAGAATGTAA 41015 .......... .......... .......... .......... .......... .......... 313 TTTGAATTAG ATTTTATCTG TTAGAAATAT AGCTGTTGGA AACTTAGTTT GAACCCTGTG 40955 .......... .......... .......... .......... .......... .......... 313 ATGACAAGTG TCGGACATGT GTCATTTGTA ACTGCCGCAT GTAACTGCCA TGTGCAGAAA 40895 .......... .......... .......... .......... .......... .......... 313 TTTTATTAAG GGTGAAAATT CGTCTAAGGT TGGGAGAGTG TTTTCTAGCC ATAGACAAAT 40835 .......... .......... .......... .......... .......... .......... 313 TCGTGAAGCT TTCCTTTATA TTAATTATCA GATTAATAAA GGTTGGGACG AGTTCCTGTA 40775 .......... .......... .......... .......... .......... .......... 313 AAGTCTGTTT GTTGTTTAAC TTTGCTGTTA AAATATTTCT ATACTTAGTC AATTTCGTGG 40715 .......... .......... .......... .......... .......... .......... 313 GTGTAAATAG GCTGAGTGTT ACAGACGTTT GTAAGACTGC CTAGGGTGGT GTTCGGTAAA 40655 .......... .......... .......... .......... .......... .......... 313 ATAAATCGAC CATCTTTCAG TATGCAAGTA TCATCCGTCA TATTTTGGGA CATTAGTGCT 40595 .......... .......... .......... .......... .......... .......... 313 GCTGCCATTC AAAAACTAAA ACATATATAG TCTTATACTA ACGGACATAT ACGTATCATA 40535 .......... .......... .......... .......... .......... .......... 313 ATCTTATCCA CCGATCCGAC ATTTATCAAC GGGTAAAATT GTGTCACGTG TCCCAATTTA 40475 .......... .......... .......... .......... .......... .......... 313 GTCTTCAGTT AGTGTAAAGA ACATATTTGC TCTAGCTTTT GGACAGCAGG GGCACCAATG 40415 .......... .......... .......... .......... .......... .......... 313 TTCCAAAGAT ATCTATATAC CATTTACGAT AGTTCGAAGG TGTATTTGTT CTTTTCTCGT 40355 .......... .......... .......... .......... .......... .......... 313 TAAGCTAAGC GGAATTTTTG GCAAATTTTA GTATATCCTG GAGAGTAAAA TTATTTCAAT 40295 .......... .......... .......... .......... .......... .......... 313 CACTAAACAA TTAGTATGAC TTTTTAATAA AAAATTATCA ATAATTGGCC TTCTAAATAA 40235 .......... .......... .......... .......... .......... .......... 313 GGTGGTTAGT TAAGACCAAA TCATTTATTA ATTCTAAACT ATTTTTTCAA TATATTTCTA 40175 .......... .......... .......... .......... .......... .......... 313 CAAAATCTTT GCTTTTAGGA CTTCAAAGGC ACGCAGCCCC CGCACTCTCC ATTAAATAAC 40115 .......... .......... .......... .......... .......... .......... 313 TTTATTTAGA AGTATTTGAG TCGTGAAAAT AGTCATTAAT TTTTGCATAA GGATATATCA 40055 .......... .......... .......... .......... .......... .......... 313 TATTTGCAGA AAAAGCTTGT ATTATGATAA ATTGTCAACA TCACATGTCA TACAAAGCAA 39995 .......... .......... .......... .......... .......... .......... 313 AAAATAAATA AAATATACAA AGCAAAAAAA AAATATACAA AGAATTATTA ATTTTTTTTT 39935 .......... .......... .......... .......... .......... .......... 313 ACAAAAAAAG AGTAAATATT ACGTGGCAGC GTATATAGAC CATTGCCTAA TACAAATCTG 39875 .......... .......... .......... .......... .......... .......... 313 AGCGTGAATT TATAGGGGGC TAGATATTTT ACATTTAAAA AGTTCACAGG GGTGATAGGA 39815 .......... .......... .......... .......... .......... .......... 313 CCTCCGTAAA GAATAAGTGT GTAGTTGGGA ATTTAAGCTT AGGGGGACTT TTGGCCATTT 39755 .......... .......... .......... .......... .......... .......... 313 TCTCTTTAAA ATAGTCATAA TAATCACATA ATCTCCCATA TAAAAGTTTC AAATATTTAC 39695 .......... .......... .......... .......... .......... .......... 313 CATTAAAAGT ACGAGTTAAT ATCTTAAAAA GTCACTCAAT TTTAAGAATT TTTCTAGCAA 39635 .......... .......... .......... .......... .......... .......... 313 AATCATTAAA CTTTGTTTTG TATCAATAAA ATAACTCAAC TTAAACTTTT GTATCAATAA 39575 .......... .......... .......... .......... .......... .......... 313 AATTAGTTAA CTAAATTTAT CATTAATTTT TTTTATATCA CAAAATAGTA TATTTTTTTT 39515 .......... .......... .......... .......... .......... .......... 313 TATGTCAAGT GTACATCAAC GAAATCTAAT AATCATGCAT TTAGTTAAGG AACAAATAAA 39455 .......... .......... .......... .......... .......... .......... 313 GGGCTCCTGG GTTGGATCTA TATCACGGGT AAAATGTTGA TTTAGTGTGT TAATTCTATT 39395 .......... .......... .......... .......... .......... .......... 313 AAATTAAGTG CATAAAATAA TAATAATTAT AAATTAAGCG AATACAACAA TGATTATGGT 39335 .......... .......... .......... .......... .......... .......... 313 TGTCACGTTT TATTTGCAGT GAAAAATTTG TAATTAAACT TCATTAATAA ATGTATACAT 39275 .......... .......... .......... .......... .......... .......... 313 GGCTCAAAAA TAACTACGAA AAGAAAAAAA AATCTCGTGT AAAAACGCGC AAACTAATTT 39215 .......... .......... .......... .......... .......... .......... 313 GATTATCAAA CTTCTCCATA TTCACTGCTA TTAGTTAGGT TTAAGACGTT AACAATTTTA 39155 .......... .......... .......... .......... .......... .......... 313 ATGATAAATG TAGTTAAATA ATTTTATTGA TACAAATATT AAAATTGAGT AATTTTATTG 39095 .......... .......... .......... .......... .......... .......... 313 ATATAAAATA AAGTTTAATA ACTTTACTAT ATAAATTCTC AAAGTTAAGT GACCTTTTAA 39035 .......... .......... .......... .......... .......... .......... 313 GATATTAACT CTTAAAAGCA TAGAATCCGA ATTTTGAATG GGGAGCCAAA AAAAATTCTC 38975 .......... .......... .......... .......... .......... .......... 313 ATTTCAAATA GTTTAAGGCA AAATTGAAGG GAAAAATGAC CTATTTTTCT TATTTTAAAG 38915 .......... .......... .......... .......... .......... .......... 313 TCATAGTTAA TAAGAAGAGT ATTTTAAGCT ATTTTGATAG TTAAAAGAAT ATTTAATAAG 38855 .......... .......... .......... .......... .......... .......... 313 TTATCAAATA ATAATATTGC TTCTTTG 38828 ||| ||| |||| | | |||| .......ATA ATATTATT-C ATTTTTG 332 hqPGS_C08HBa0037O11.1-_SGN-E578389- (41790 41478) ******************************************************************************** EST sequence 66 +strand 758 n (File: SGN-E332734+) 1 TCATCTTCAG ATAAGATTAT TCAACTCTCC TTCCTTCAAA GTGCTGCTTA TCTGAGCAAT 61 CATGGCTTCT GCGGCAATGT TGAATGCACC TTGTAATATT GGAGCTGTAA AGTTTGAGGT 121 GAAACTGAAG CCATCGCCAA ATTTGTTTTG TGCACGGCCT TCTGTTAAGT TGAATCAAAG 181 GAGGGTGTTA ACCATTAGAG CTAGCAAGGA AGGGCATGAT AATGGGTCTA GCTCAGGGCC 241 CTTGAGAAAG ATGGGGTTGA CTGATGAGGA GTGTGAGGCT GCTGTAGTTG CCGGAAATGT 301 ACCTGAAGCT CCTCCGGTTC CACCAAAGCC GGCTGCACCT GACGGTACCC CTATTGTGTC 361 TTCACTGCCA ATTAATAGGA GACCACGCCG TAATCGTAGG TCGTCAGCAG CAAGAGCTGC 421 ATTCCAGGAA ACAAATATAA GCCCTGCAAA TCTTGTATAT CCACTATTTA TTCATGAGGG 481 TGAAGAGGAC ACACCTATTG GAGCAATGCC TGGATGTTAT AGGCTTGGAT GGAGGCATGG 541 TCTTGTTGAA GAGGTCGCAA AGGCAAGGGA TGTTGGAGTC AACAGCATTG TGCTCTNNTC 601 CAAAGTTCCA GATGCTTTNA AGACTCTACA GGAGATGAAG CTTACNATGA CNATGGATTA 661 GTGCCCCGAA CAATACGTTT GCTGAAAGAC ANNATACCTG ATCTGTATCT ACACTGATGN 721 TGCTTTGGAT CATATTCATC TGATGGGCAT GATGGCAT Predicted gene structure (within gDNA segment 41839 to 48556): Exon 1 42439 42479 ( 41 n); cDNA 1 41 ( 41 n); score: 1.000 Intron 1 42480 43240 ( 761 n); Pd: 0.998 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 43241 43566 ( 326 n); cDNA 42 367 ( 326 n); score: 1.000 Intron 2 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 44683 44794 ( 112 n); cDNA 368 479 ( 112 n); score: 1.000 Intron 3 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 4 44867 44940 ( 74 n); cDNA 480 553 ( 74 n); score: 1.000 Intron 4 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 0.92) Exon 5 47056 47124 ( 69 n); cDNA 554 622 ( 69 n); score: 0.928 Intron 5 47125 47206 ( 82 n); Pd: 0.974 (s: 0.90), Pa: 0.992 (s: 0.94) Exon 6 47207 47290 ( 84 n); cDNA 623 704 ( 82 n); score: 0.893 Intron 6 47291 47390 ( 100 n); Pd: 0.910 (s: 0.88), Pa: 0.954 (s: 0.94) Exon 7 47391 47446 ( 56 n); cDNA 705 758 ( 54 n); score: 0.946 MATCH C08HBa0037O11.1+ SGN-E332734+ 0.976 762 1.005 C PGS_C08HBa0037O11.1+_SGN-E332734+ (42439 42479,43241 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47446) Alignment (genomic DNA sequence = upper lines): TCATCTTCAG ATAAGATTAT TCAACTCTCC TTCCTTCAAA GGTAAAATTT TTTGCTCCTC 42498 |||||||||| |||||||||| |||||||||| |||||||||| | TCATCTTCAG ATAAGATTAT TCAACTCTCC TTCCTTCAAA G......... .......... 41 TTTTACTTGG TGTTCTGTAA AATTACTTGA GAAAAATCAC ATCTTTTGGC TCAATTTTGC 42558 .......... .......... .......... .......... .......... .......... 41 TTTTCAATAC CTCAAATTGT CAATTCTTGT AATATTAGCT CTTTTGGTTT TACTCTAGTT 42618 .......... .......... .......... .......... .......... .......... 41 GATTTATACA TTTTGAATTC ACTTTGTTTT GCCAATTGAT TGAGAAAATT ATATGTTAAG 42678 .......... .......... .......... .......... .......... .......... 41 CTCAATTATG GTTTGGAATG CTCAAAATCA TTTTTTTTTT GGGTAGGTGA GTGGGTGGGT 42738 .......... .......... .......... .......... .......... .......... 41 GGTAGGGGTT GTTTCTGTTA TTGGGTTTGC TTCAGTTGGA GAGATGAGTT TGAAAGTTCC 42798 .......... .......... .......... .......... .......... .......... 41 TATCTTTTTT GGGTTTTATC CAAATAGCTC AAGAAATCAT ATATTCATCT CCATTGTGCT 42858 .......... .......... .......... .......... .......... .......... 41 TACAAATGCT AAAATTTCTA ATTTTGTAAT GAAAGTGTTT CTAGGTTCTT GTTGTTATTG 42918 .......... .......... .......... .......... .......... .......... 41 GTTTTTTTAA CAGTATCATT AGATAAAATT TGGGTTTGGG CCAGATTTTT GAGAAAATCA 42978 .......... .......... .......... .......... .......... .......... 41 CATGGTATGC TCAATTATGT TTTGGAATGC TCAAATTCCA ATTTTGTGAT GTACTGTTTT 43038 .......... .......... .......... .......... .......... .......... 41 TCATATTTTT TTTTGTTATT ATGTGTGGAT TTGTTGCAGT AAAATGATGC ATTTGAAGTT 43098 .......... .......... .......... .......... .......... .......... 41 CGTAGCTAAA TTATGCTTTG TAAAGCTCAG AATTCCATCT GTAAAATATG ATCTTTTCGG 43158 .......... .......... .......... .......... .......... .......... 41 GTCTTCGTGT TATGGGATTT TGAGTTGTGT GCATATTATG GGATTTCAAA TTGTAATATA 43218 .......... .......... .......... .......... .......... .......... 41 TGCACTTTCC CTCATATTGT AGTGCTGCTT ATCTGAGCAA TCATGGCTTC TGCGGCAATG 43278 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TGCTGCTT ATCTGAGCAA TCATGGCTTC TGCGGCAATG 79 TTGAATGCAC CTTGTAATAT TGGAGCTGTA AAGTTTGAGG TGAAACTGAA GCCATCGCCA 43338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATGCAC CTTGTAATAT TGGAGCTGTA AAGTTTGAGG TGAAACTGAA GCCATCGCCA 139 AATTTGTTTT GTGCACGGCC TTCTGTTAAG TTGAATCAAA GGAGGGTGTT AACCATTAGA 43398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGTTTT GTGCACGGCC TTCTGTTAAG TTGAATCAAA GGAGGGTGTT AACCATTAGA 199 GCTAGCAAGG AAGGGCATGA TAATGGGTCT AGCTCAGGGC CCTTGAGAAA GATGGGGTTG 43458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAGCAAGG AAGGGCATGA TAATGGGTCT AGCTCAGGGC CCTTGAGAAA GATGGGGTTG 259 ACTGATGAGG AGTGTGAGGC TGCTGTAGTT GCCGGAAATG TACCTGAAGC TCCTCCGGTT 43518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGATGAGG AGTGTGAGGC TGCTGTAGTT GCCGGAAATG TACCTGAAGC TCCTCCGGTT 319 CCACCAAAGC CGGCTGCACC TGACGGTACC CCTATTGTGT CTTCACTGGT TAGTTTTCAG 43578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CCACCAAAGC CGGCTGCACC TGACGGTACC CCTATTGTGT CTTCACTG.. .......... 367 ACATCATTAT TTTTAATTAT GCCAATTTTG CCATTTTAGA GATGGCGAGG AAGTGTTAAG 43638 .......... .......... .......... .......... .......... .......... 367 TGGACCACCT TTTTCATTAG TTTTGGAGGA CTGTTTTGAT TGCTTATTGG CTTTGGTTTT 43698 .......... .......... .......... .......... .......... .......... 367 GGTGGCATAT TCTCTAATCT GCTAAACGTT ATTTTCTAAT CTCCGTATCA AATTGTTACA 43758 .......... .......... .......... .......... .......... .......... 367 GGAATTAGAT GTTTCATGAG TCCAGAGTGT TTGATTTGTT TGTAATTGAA CTAGCCAGAT 43818 .......... .......... .......... .......... .......... .......... 367 GTAAGTTGGA TACTATGGTG TATTTTACAT GTAATATACA TTGTTTCTGA ATTACAAGTA 43878 .......... .......... .......... .......... .......... .......... 367 ACTTACCAAC TGTCAAAATA GCAGAAGCAG TGGAGAACAA ATTGCTCTGA CAACTTAGTC 43938 .......... .......... .......... .......... .......... .......... 367 ATAATTGAGT ACAGGCATCT CCATAAATGA TAACTAACTT AGGATATTAA AAATGGATTC 43998 .......... .......... .......... .......... .......... .......... 367 ATCTACTGAA TTGAGGCAAA AATTTCATAA AATGCTAGTA CTGTATTGGA AGACTGCTTA 44058 .......... .......... .......... .......... .......... .......... 367 ACTATTGTTG ATGGGTGTTA TTACATTTGA ATTCAAGATT CTTTCAAACA TTTATCCAGA 44118 .......... .......... .......... .......... .......... .......... 367 GTTCTAGTTA CAGAAAGGCG AAAGCCTTAT AAAGGAAAGT GATCATACTT TGAGAAAATT 44178 .......... .......... .......... .......... .......... .......... 367 ACACCGGACT ATAAAATCTT GAAATTGACA GATAAGGTCT AACGACAACT TCTTTGAACA 44238 .......... .......... .......... .......... .......... .......... 367 TCTTTGACTA TTCTTATCTG GATGGAGGAT GCTGAATGTT GATGCGATAC TTGCAAATTA 44298 .......... .......... .......... .......... .......... .......... 367 CATGATATTT ACTTGTAGTG TATTTCTGGT ATTTTTAGAA CATTGAGGGT CCTTATTCCA 44358 .......... .......... .......... .......... .......... .......... 367 TTTACACAAG ATGATCAGCG ATCTTTGTGA GACATCCCTA TGATTACTTG ACTCTGAAGT 44418 .......... .......... .......... .......... .......... .......... 367 GGTGTAGTTA ATATTTTATC CTTCAACTTC TAGAAAAAAA TATCCTTCAA CTTCTACTCT 44478 .......... .......... .......... .......... .......... .......... 367 TCTTGTAGGT TGTCAGTGGG TACTACATTT ATAATTTTGT AAGTAATAGT GTTAACTTGT 44538 .......... .......... .......... .......... .......... .......... 367 TTAGTTTGTA TAACTGATAG CATCTTGGTT GAATTGTTGG ATGGTATGGT GATAATGCTT 44598 .......... .......... .......... .......... .......... .......... 367 TAATATAGAC TCAACACTGC ATCAGAAGTT GATAGATTGA TTTGCTATGT GCCTGTAGCT 44658 .......... .......... .......... .......... .......... .......... 367 AATGACTGGA TGTTGCTTGT ATAGCCAATT AATAGGAGAC CACGCCGTAA TCGTAGGTCG 44718 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CCAATT AATAGGAGAC CACGCCGTAA TCGTAGGTCG 403 TCAGCAGCAA GAGCTGCATT CCAGGAAACA AATATAAGCC CTGCAAATCT TGTATATCCA 44778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCAGCAA GAGCTGCATT CCAGGAAACA AATATAAGCC CTGCAAATCT TGTATATCCA 463 CTATTTATTC ATGAGGGTGA GTACTTGTCT GAATTCCTCT CTGCTTATAA CATGTATCAA 44838 |||||||||| |||||| CTATTTATTC ATGAGG.... .......... .......... .......... .......... 479 TCTGTTCTTA CGAATCACAC ACTTGCAGGT GAAGAGGACA CACCTATTGG AGCAATGCCT 44898 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT GAAGAGGACA CACCTATTGG AGCAATGCCT 511 GGATGTTATA GGCTTGGATG GAGGCATGGT CTTGTTGAAG AGGTCGGTGA GCTATCCCTA 44958 |||||||||| |||||||||| |||||||||| |||||||||| || GGATGTTATA GGCTTGGATG GAGGCATGGT CTTGTTGAAG AG........ .......... 553 GGATTCTTTG TCCTCTATAA TGTCTTTTTT TAGATCAGAA TTTCAGCATT TTGGTTCCTT 45018 .......... .......... .......... .......... .......... .......... 553 AATTCAATTC TTCTTTGTCT AATTGATCTT GTCATATAAT CCTGCTCCCT GTTCTTCCAA 45078 .......... .......... .......... .......... .......... .......... 553 ATTTTAGCTG GTGATAATGA AGTATCTGAT GCATTTGATC ACATAAATAG CGAGCAATGT 45138 .......... .......... .......... .......... .......... .......... 553 TCTTTATCAA GTATCTAATG TTTATGATAG GTGGAAGGTA GTTTCGTTTA AGGCAGCCTG 45198 .......... .......... .......... .......... .......... .......... 553 ACCACCGTAA CTCTACTTTG GGCCATAAGT AGCTCTCTCC TTGATTAATT TTGATATGTT 45258 .......... .......... .......... .......... .......... .......... 553 GACCTTGTAG CCCTGCTTTG TATTGGTTCA CAGTGTATCT AATTGATGAT GATGTGCTGC 45318 .......... .......... .......... .......... .......... .......... 553 ATTGGTCTTG TTGCTATGAT TTTGCTATAT CTTGAGGGTG ATTTGCTTTC CATTGTCCAT 45378 .......... .......... .......... .......... .......... .......... 553 TTGTTTTCCA TTATGTATGT TATTATGACC AGACCAGTAT CATTACAATA TTGCTAGTAT 45438 .......... .......... .......... .......... .......... .......... 553 TAATGATAAA AACCATTATC ATTACATTAT TGCTGGTATC AATGATCAAA GTTTTACCAT 45498 .......... .......... .......... .......... .......... .......... 553 AGCATTAGGG GTAAAGTGTC TTTCTTGTTT GGTGATCAGT CAACGAAGTC ATTCTGGATA 45558 .......... .......... .......... .......... .......... .......... 553 AACAAAACGC TATCCTCGTA ATTTGTTGTA GGTTTTTATT TTTCAATTTT CGATGTTGTA 45618 .......... .......... .......... .......... .......... .......... 553 TTTATTGGAG AGGGGTAGAG GGGCAGAGGG GCAGGCCCAT TATTCACTTT GTTTTAAACC 45678 .......... .......... .......... .......... .......... .......... 553 ATGCTCCAAG GGCTAGGGGG ATTTCTCTGT TACAAAAAAA AAAGATTTCC TCTTTTTGGG 45738 .......... .......... .......... .......... .......... .......... 553 TTGGGAAAAT ACATCACCGG ATTTTAGGCT AAATAAAGAC TATGATCATT TGTGGGTACC 45798 .......... .......... .......... .......... .......... .......... 553 AGTCACACAT GTCAGGATTA TCAACGGACA TGCCTGTCTA GATTCTGACT GCTCTTGTTT 45858 .......... .......... .......... .......... .......... .......... 553 GGCAAAAATA ATTAAAATAA CGCTGTCAAG AACTCTGCTC TCAGATTCCT CTGAGGCACT 45918 .......... .......... .......... .......... .......... .......... 553 CGCGATGTGT AATAAGAGAG GTGTGTGGTC TGGACATATT ATTCAGTATT TTAAATATAT 45978 .......... .......... .......... .......... .......... .......... 553 TCAAGACTTC AATTACAGAT ACCAGAACAA AGTATAAATT TCGAATTCAG GTCCAATATT 46038 .......... .......... .......... .......... .......... .......... 553 CATTGTAACT TTGTTAGGTT GGGTAGGATG AAAGACATTA TTTTTTCAAA AGAAAGAAAG 46098 .......... .......... .......... .......... .......... .......... 553 ACCTGCAAAG AATTCCTTTT CTTTTTTTTC ACCAAAACAG TATTTAATTA TAATCTTCCA 46158 .......... .......... .......... .......... .......... .......... 553 GTGAATAAAT CGATCTTTTT TTCCCATCTC AAAAAAGACT GATTTATTCA CTGGAAGATG 46218 .......... .......... .......... .......... .......... .......... 553 ATAGTTAAAT TCTGGTTTGG TAAAAAGGAA ATCTTTGCAG GTCCTAGGTG CAGGTTTAAC 46278 .......... .......... .......... .......... .......... .......... 553 TTTTAAGTGT AGATATCAGG AAAAAGGGAA GGACAATAAA CAGAGAAAAA GAAAAAGAAA 46338 .......... .......... .......... .......... .......... .......... 553 AAGAAATAGA AATGCATACA ACAACTATTA AAATTTACTA CTACACCTCA ATCACAAGCA 46398 .......... .......... .......... .......... .......... .......... 553 AATTGGGGGA TCAGACAAGC TACCATGTAT ACTCACGTAT ATACTTATTT GCTAATGGGT 46458 .......... .......... .......... .......... .......... .......... 553 TGAGAATGTA TAGGATGCTC TTTTAATTGG AGGAAATTAC CTTGGAGGCT AATAAGTACT 46518 .......... .......... .......... .......... .......... .......... 553 TTGGCGATAA TTGGTACTTT TACAATTCTT TTGTCCATGT TATTGACAGC CTCATGTACA 46578 .......... .......... .......... .......... .......... .......... 553 ATATTCAAGG AAACCTACAT TTACTTGAGT AGAAATCAAA CAAAGTACTT GTAAGCTAAA 46638 .......... .......... .......... .......... .......... .......... 553 ATTAGTTGCT GTAAATCTGT TGTAGCAGAA GTGGAGTCTC CAGTGGATGA TACATGGGTA 46698 .......... .......... .......... .......... .......... .......... 553 GGCTATTATA GATGGGTCTG TATTGCACTC AATTGCTCAT CTGCAGTTGC CGCCTCTGAT 46758 .......... .......... .......... .......... .......... .......... 553 TGAGAAGTAA ATACCAAATG GAACTTGAAC ATTTCTAGAA TTTTACCAGC TTCCAGAATA 46818 .......... .......... .......... .......... .......... .......... 553 TGATCATTCT TCACACTTAC TGTCATATGC TTTTAGAGGG CTCATATAAG TCTTGTCGAT 46878 .......... .......... .......... .......... .......... .......... 553 GATTTGGTTC CAAGCTTGCT GTCCGTGACA CATAATTTTC AGTACTTAAC AAAACAACAA 46938 .......... .......... .......... .......... .......... .......... 553 ATTGGCTTGG TTAAAGATAC ATCTAGATCA TATTTAAGGA TTCAACTGCG ATCATAGCAC 46998 .......... .......... .......... .......... .......... .......... 553 CTTTGTAATA CTTCTGTGCA TTCTTTTGAG CAAGTGGATT TACTTTTTCT TATGCAGGTC 47058 ||| .......... .......... .......... .......... .......... .......GTC 556 GCAAAGGCAA GGGATGTTGG AGTCAACAGC ATTGTGCTCT TCCCAAAAGT TCCAGATGCT 47118 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| |||||||||| GCAAAGGCAA GGGATGTTGG AGTCAACAGC ATTGTGCTCT NNTCCAAAGT TCCAGATGCT 616 TTAAAGGTCC TCTTCTAGAC TTCTACCAGC ATAAATTTCC ATGTACCATC TGACTTCAGA 47178 || ||| TTNAAG.... .......... .......... .......... .......... .......... 622 TTATATAACT TGTTTCCTGC AACTTCAGAC CTCTACAGGA GATGAAGCTT ACAATGACAA 47238 | |||||||||| |||||||||| || ||||| | .......... .......... ........A- CTCTACAGGA GATGAAGCTT ACNATGACNA 653 TGGATTAGTG CCCCGAACAA TACGTTTGCT GAAAGACAAA TACCCTGATC TTGTATGTCG 47298 |||||||||| |||||||||| |||||||||| |||||||| ||||||| | TGGATTAGTG CCCCGAACAA TACGTTTGCT GAAAGACANN ATACCTGATC -T........ 704 ATACATATCA TCTGGTTTCT TTTATCTGCT TAAACAACTT TTCTGTGGGA AAATCCTGGC 47358 .......... .......... .......... .......... .......... .......... 704 GCTTCCTTTT ATGTTTGATG CGTTTTCAAT AGGTTATCTA CACTGATGTT GCTTTGGATC 47418 | |||||| |||||||| | ||||||||| .......... .......... .......... ..G-TATCTA CACTGATGNT GCTTTGGAT- 730 CATATTCATC TGATGGGCAT GATGGCAT 47446 |||||||||| |||||||||| |||||||| CATATTCATC TGATGGGCAT GATGGCAT 758 hqPGS_C08HBa0037O11.1+_SGN-E332734+ (42439 42479,43241 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47446) ******************************************************************************** EST sequence 22 +strand 594 n (File: SGN-E346861+) 1 ATCTTCAGAT AAGATATTCA ACTCTCCTTC CTTAAAGTGC TGCTTATCTG AGCAATCATG 61 GCTTCTGCGG CAATGTTGAA TGCACCTTGT AATATTGGAG CTGTAAAGTT TGAGGTGAAA 121 CTGAAGCCAT CGCCAAATTT GTTTTGTGCA CGGCCTTCTG TTAAGTTGAA TCAAAGGAGG 181 GTGTTAACCA TTAGAGCTAG CAAGGAAGGG CATGATAATG GGTCTAGCTC AGGGCCCTTG 241 AGAAAGATTG GGTTGACTGA TGAGGAGTGT GAGGCTGCTG TAGTTGCCGG AAATGTACCT 301 GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 361 CTGCCAATTA ATAGGAGACC ACGCCGTAAT CGTAGGTCGT CAGCAGCAAG AGCTGCATTC 421 CAGGAAACAA ATATAAGCCC TGCAAATCTT GTATATCCAC TATTTATTCA TGAGGGTGAA 481 GAGGACACAC CTATTGGAGC AATGCCTGGA TGTTATANGC TTGGATGGAG GCATGGTCTT 541 GTTGAAGAGG TCGCAAAGGC AAGGGATGTT GGAGTCAACA GCATTGTGCT CTTC Predicted gene structure (within gDNA segment 42289 to 47710): Exon 1 42441 42479 ( 39 n); cDNA 1 37 ( 37 n); score: 0.949 Intron 1 42480 43240 ( 761 n); Pd: 0.998 (s: 0), Pa: 0.974 (s: 1.00) Exon 2 43241 43566 ( 326 n); cDNA 38 363 ( 326 n); score: 0.997 Intron 2 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 44683 44794 ( 112 n); cDNA 364 475 ( 112 n); score: 1.000 Intron 3 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 0.98) Exon 4 44867 44940 ( 74 n); cDNA 476 549 ( 74 n); score: 0.986 Intron 4 44941 47055 (2115 n); Pd: 0.872 (s: 0.98), Pa: 0.993 (s: 1.00) Exon 5 47056 47100 ( 45 n); cDNA 550 594 ( 45 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E346861+ 0.996 596 1.003 C PGS_C08HBa0037O11.1+_SGN-E346861+ (42441 42479,43241 43566,44683 44794,44867 44940,47056 47100) Alignment (genomic DNA sequence = upper lines): ATCTTCAGAT AAGATTATTC AACTCTCCTT CCTTCAAAGG TAAAATTTTT TGCTCCTCTT 42500 |||||||||| |||| ||||| |||||||||| |||| |||| ATCTTCAGAT AAGA-TATTC AACTCTCCTT CCTT-AAAG. .......... .......... 37 TTACTTGGTG TTCTGTAAAA TTACTTGAGA AAAATCACAT CTTTTGGCTC AATTTTGCTT 42560 .......... .......... .......... .......... .......... .......... 37 TTCAATACCT CAAATTGTCA ATTCTTGTAA TATTAGCTCT TTTGGTTTTA CTCTAGTTGA 42620 .......... .......... .......... .......... .......... .......... 37 TTTATACATT TTGAATTCAC TTTGTTTTGC CAATTGATTG AGAAAATTAT ATGTTAAGCT 42680 .......... .......... .......... .......... .......... .......... 37 CAATTATGGT TTGGAATGCT CAAAATCATT TTTTTTTTGG GTAGGTGAGT GGGTGGGTGG 42740 .......... .......... .......... .......... .......... .......... 37 TAGGGGTTGT TTCTGTTATT GGGTTTGCTT CAGTTGGAGA GATGAGTTTG AAAGTTCCTA 42800 .......... .......... .......... .......... .......... .......... 37 TCTTTTTTGG GTTTTATCCA AATAGCTCAA GAAATCATAT ATTCATCTCC ATTGTGCTTA 42860 .......... .......... .......... .......... .......... .......... 37 CAAATGCTAA AATTTCTAAT TTTGTAATGA AAGTGTTTCT AGGTTCTTGT TGTTATTGGT 42920 .......... .......... .......... .......... .......... .......... 37 TTTTTTAACA GTATCATTAG ATAAAATTTG GGTTTGGGCC AGATTTTTGA GAAAATCACA 42980 .......... .......... .......... .......... .......... .......... 37 TGGTATGCTC AATTATGTTT TGGAATGCTC AAATTCCAAT TTTGTGATGT ACTGTTTTTC 43040 .......... .......... .......... .......... .......... .......... 37 ATATTTTTTT TTGTTATTAT GTGTGGATTT GTTGCAGTAA AATGATGCAT TTGAAGTTCG 43100 .......... .......... .......... .......... .......... .......... 37 TAGCTAAATT ATGCTTTGTA AAGCTCAGAA TTCCATCTGT AAAATATGAT CTTTTCGGGT 43160 .......... .......... .......... .......... .......... .......... 37 CTTCGTGTTA TGGGATTTTG AGTTGTGTGC ATATTATGGG ATTTCAAATT GTAATATATG 43220 .......... .......... .......... .......... .......... .......... 37 CACTTTCCCT CATATTGTAG TGCTGCTTAT CTGAGCAATC ATGGCTTCTG CGGCAATGTT 43280 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... TGCTGCTTAT CTGAGCAATC ATGGCTTCTG CGGCAATGTT 77 GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG AAACTGAAGC CATCGCCAAA 43340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG AAACTGAAGC CATCGCCAAA 137 TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG AGGGTGTTAA CCATTAGAGC 43400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG AGGGTGTTAA CCATTAGAGC 197 TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC TTGAGAAAGA TGGGGTTGAC 43460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC TTGAGAAAGA TTGGGTTGAC 257 TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA CCTGAAGCTC CTCCGGTTCC 43520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA CCTGAAGCTC CTCCGGTTCC 317 ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT TCACTGGTTA GTTTTCAGAC 43580 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT TCACTG.... .......... 363 ATCATTATTT TTAATTATGC CAATTTTGCC ATTTTAGAGA TGGCGAGGAA GTGTTAAGTG 43640 .......... .......... .......... .......... .......... .......... 363 GACCACCTTT TTCATTAGTT TTGGAGGACT GTTTTGATTG CTTATTGGCT TTGGTTTTGG 43700 .......... .......... .......... .......... .......... .......... 363 TGGCATATTC TCTAATCTGC TAAACGTTAT TTTCTAATCT CCGTATCAAA TTGTTACAGG 43760 .......... .......... .......... .......... .......... .......... 363 AATTAGATGT TTCATGAGTC CAGAGTGTTT GATTTGTTTG TAATTGAACT AGCCAGATGT 43820 .......... .......... .......... .......... .......... .......... 363 AAGTTGGATA CTATGGTGTA TTTTACATGT AATATACATT GTTTCTGAAT TACAAGTAAC 43880 .......... .......... .......... .......... .......... .......... 363 TTACCAACTG TCAAAATAGC AGAAGCAGTG GAGAACAAAT TGCTCTGACA ACTTAGTCAT 43940 .......... .......... .......... .......... .......... .......... 363 AATTGAGTAC AGGCATCTCC ATAAATGATA ACTAACTTAG GATATTAAAA ATGGATTCAT 44000 .......... .......... .......... .......... .......... .......... 363 CTACTGAATT GAGGCAAAAA TTTCATAAAA TGCTAGTACT GTATTGGAAG ACTGCTTAAC 44060 .......... .......... .......... .......... .......... .......... 363 TATTGTTGAT GGGTGTTATT ACATTTGAAT TCAAGATTCT TTCAAACATT TATCCAGAGT 44120 .......... .......... .......... .......... .......... .......... 363 TCTAGTTACA GAAAGGCGAA AGCCTTATAA AGGAAAGTGA TCATACTTTG AGAAAATTAC 44180 .......... .......... .......... .......... .......... .......... 363 ACCGGACTAT AAAATCTTGA AATTGACAGA TAAGGTCTAA CGACAACTTC TTTGAACATC 44240 .......... .......... .......... .......... .......... .......... 363 TTTGACTATT CTTATCTGGA TGGAGGATGC TGAATGTTGA TGCGATACTT GCAAATTACA 44300 .......... .......... .......... .......... .......... .......... 363 TGATATTTAC TTGTAGTGTA TTTCTGGTAT TTTTAGAACA TTGAGGGTCC TTATTCCATT 44360 .......... .......... .......... .......... .......... .......... 363 TACACAAGAT GATCAGCGAT CTTTGTGAGA CATCCCTATG ATTACTTGAC TCTGAAGTGG 44420 .......... .......... .......... .......... .......... .......... 363 TGTAGTTAAT ATTTTATCCT TCAACTTCTA GAAAAAAATA TCCTTCAACT TCTACTCTTC 44480 .......... .......... .......... .......... .......... .......... 363 TTGTAGGTTG TCAGTGGGTA CTACATTTAT AATTTTGTAA GTAATAGTGT TAACTTGTTT 44540 .......... .......... .......... .......... .......... .......... 363 AGTTTGTATA ACTGATAGCA TCTTGGTTGA ATTGTTGGAT GGTATGGTGA TAATGCTTTA 44600 .......... .......... .......... .......... .......... .......... 363 ATATAGACTC AACACTGCAT CAGAAGTTGA TAGATTGATT TGCTATGTGC CTGTAGCTAA 44660 .......... .......... .......... .......... .......... .......... 363 TGACTGGATG TTGCTTGTAT AGCCAATTAA TAGGAGACCA CGCCGTAATC GTAGGTCGTC 44720 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..CCAATTAA TAGGAGACCA CGCCGTAATC GTAGGTCGTC 401 AGCAGCAAGA GCTGCATTCC AGGAAACAAA TATAAGCCCT GCAAATCTTG TATATCCACT 44780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCAAGA GCTGCATTCC AGGAAACAAA TATAAGCCCT GCAAATCTTG TATATCCACT 461 ATTTATTCAT GAGGGTGAGT ACTTGTCTGA ATTCCTCTCT GCTTATAACA TGTATCAATC 44840 |||||||||| |||| ATTTATTCAT GAGG...... .......... .......... .......... .......... 475 TGTTCTTACG AATCACACAC TTGCAGGTGA AGAGGACACA CCTATTGGAG CAATGCCTGG 44900 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTGA AGAGGACACA CCTATTGGAG CAATGCCTGG 509 ATGTTATAGG CTTGGATGGA GGCATGGTCT TGTTGAAGAG GTCGGTGAGC TATCCCTAGG 44960 |||||||| | |||||||||| |||||||||| |||||||||| ATGTTATANG CTTGGATGGA GGCATGGTCT TGTTGAAGAG .......... .......... 549 ATTCTTTGTC CTCTATAATG TCTTTTTTTA GATCAGAATT TCAGCATTTT GGTTCCTTAA 45020 .......... .......... .......... .......... .......... .......... 549 TTCAATTCTT CTTTGTCTAA TTGATCTTGT CATATAATCC TGCTCCCTGT TCTTCCAAAT 45080 .......... .......... .......... .......... .......... .......... 549 TTTAGCTGGT GATAATGAAG TATCTGATGC ATTTGATCAC ATAAATAGCG AGCAATGTTC 45140 .......... .......... .......... .......... .......... .......... 549 TTTATCAAGT ATCTAATGTT TATGATAGGT GGAAGGTAGT TTCGTTTAAG GCAGCCTGAC 45200 .......... .......... .......... .......... .......... .......... 549 CACCGTAACT CTACTTTGGG CCATAAGTAG CTCTCTCCTT GATTAATTTT GATATGTTGA 45260 .......... .......... .......... .......... .......... .......... 549 CCTTGTAGCC CTGCTTTGTA TTGGTTCACA GTGTATCTAA TTGATGATGA TGTGCTGCAT 45320 .......... .......... .......... .......... .......... .......... 549 TGGTCTTGTT GCTATGATTT TGCTATATCT TGAGGGTGAT TTGCTTTCCA TTGTCCATTT 45380 .......... .......... .......... .......... .......... .......... 549 GTTTTCCATT ATGTATGTTA TTATGACCAG ACCAGTATCA TTACAATATT GCTAGTATTA 45440 .......... .......... .......... .......... .......... .......... 549 ATGATAAAAA CCATTATCAT TACATTATTG CTGGTATCAA TGATCAAAGT TTTACCATAG 45500 .......... .......... .......... .......... .......... .......... 549 CATTAGGGGT AAAGTGTCTT TCTTGTTTGG TGATCAGTCA ACGAAGTCAT TCTGGATAAA 45560 .......... .......... .......... .......... .......... .......... 549 CAAAACGCTA TCCTCGTAAT TTGTTGTAGG TTTTTATTTT TCAATTTTCG ATGTTGTATT 45620 .......... .......... .......... .......... .......... .......... 549 TATTGGAGAG GGGTAGAGGG GCAGAGGGGC AGGCCCATTA TTCACTTTGT TTTAAACCAT 45680 .......... .......... .......... .......... .......... .......... 549 GCTCCAAGGG CTAGGGGGAT TTCTCTGTTA CAAAAAAAAA AGATTTCCTC TTTTTGGGTT 45740 .......... .......... .......... .......... .......... .......... 549 GGGAAAATAC ATCACCGGAT TTTAGGCTAA ATAAAGACTA TGATCATTTG TGGGTACCAG 45800 .......... .......... .......... .......... .......... .......... 549 TCACACATGT CAGGATTATC AACGGACATG CCTGTCTAGA TTCTGACTGC TCTTGTTTGG 45860 .......... .......... .......... .......... .......... .......... 549 CAAAAATAAT TAAAATAACG CTGTCAAGAA CTCTGCTCTC AGATTCCTCT GAGGCACTCG 45920 .......... .......... .......... .......... .......... .......... 549 CGATGTGTAA TAAGAGAGGT GTGTGGTCTG GACATATTAT TCAGTATTTT AAATATATTC 45980 .......... .......... .......... .......... .......... .......... 549 AAGACTTCAA TTACAGATAC CAGAACAAAG TATAAATTTC GAATTCAGGT CCAATATTCA 46040 .......... .......... .......... .......... .......... .......... 549 TTGTAACTTT GTTAGGTTGG GTAGGATGAA AGACATTATT TTTTCAAAAG AAAGAAAGAC 46100 .......... .......... .......... .......... .......... .......... 549 CTGCAAAGAA TTCCTTTTCT TTTTTTTCAC CAAAACAGTA TTTAATTATA ATCTTCCAGT 46160 .......... .......... .......... .......... .......... .......... 549 GAATAAATCG ATCTTTTTTT CCCATCTCAA AAAAGACTGA TTTATTCACT GGAAGATGAT 46220 .......... .......... .......... .......... .......... .......... 549 AGTTAAATTC TGGTTTGGTA AAAAGGAAAT CTTTGCAGGT CCTAGGTGCA GGTTTAACTT 46280 .......... .......... .......... .......... .......... .......... 549 TTAAGTGTAG ATATCAGGAA AAAGGGAAGG ACAATAAACA GAGAAAAAGA AAAAGAAAAA 46340 .......... .......... .......... .......... .......... .......... 549 GAAATAGAAA TGCATACAAC AACTATTAAA ATTTACTACT ACACCTCAAT CACAAGCAAA 46400 .......... .......... .......... .......... .......... .......... 549 TTGGGGGATC AGACAAGCTA CCATGTATAC TCACGTATAT ACTTATTTGC TAATGGGTTG 46460 .......... .......... .......... .......... .......... .......... 549 AGAATGTATA GGATGCTCTT TTAATTGGAG GAAATTACCT TGGAGGCTAA TAAGTACTTT 46520 .......... .......... .......... .......... .......... .......... 549 GGCGATAATT GGTACTTTTA CAATTCTTTT GTCCATGTTA TTGACAGCCT CATGTACAAT 46580 .......... .......... .......... .......... .......... .......... 549 ATTCAAGGAA ACCTACATTT ACTTGAGTAG AAATCAAACA AAGTACTTGT AAGCTAAAAT 46640 .......... .......... .......... .......... .......... .......... 549 TAGTTGCTGT AAATCTGTTG TAGCAGAAGT GGAGTCTCCA GTGGATGATA CATGGGTAGG 46700 .......... .......... .......... .......... .......... .......... 549 CTATTATAGA TGGGTCTGTA TTGCACTCAA TTGCTCATCT GCAGTTGCCG CCTCTGATTG 46760 .......... .......... .......... .......... .......... .......... 549 AGAAGTAAAT ACCAAATGGA ACTTGAACAT TTCTAGAATT TTACCAGCTT CCAGAATATG 46820 .......... .......... .......... .......... .......... .......... 549 ATCATTCTTC ACACTTACTG TCATATGCTT TTAGAGGGCT CATATAAGTC TTGTCGATGA 46880 .......... .......... .......... .......... .......... .......... 549 TTTGGTTCCA AGCTTGCTGT CCGTGACACA TAATTTTCAG TACTTAACAA AACAACAAAT 46940 .......... .......... .......... .......... .......... .......... 549 TGGCTTGGTT AAAGATACAT CTAGATCATA TTTAAGGATT CAACTGCGAT CATAGCACCT 47000 .......... .......... .......... .......... .......... .......... 549 TTGTAATACT TCTGTGCATT CTTTTGAGCA AGTGGATTTA CTTTTTCTTA TGCAGGTCGC 47060 ||||| .......... .......... .......... .......... .......... .....GTCGC 554 AAAGGCAAGG GATGTTGGAG TCAACAGCAT TGTGCTCTTC 47100 |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCAAGG GATGTTGGAG TCAACAGCAT TGTGCTCTTC 594 hqPGS_C08HBa0037O11.1+_SGN-E346861+ (42441 42479,43241 43566,44683 44794,44867 44940,47056 47100) ******************************************************************************** EST sequence 54 +strand 589 n (File: SGN-E321051+) 1 TTCAGATAAG ATTATTCAAC TCTCCTTCCT TCAAAGTGCT GCTTATCTGA GCAATCATGG 61 CTTCTGCGGC AATGTTGAAT GCACCTTGTA ATATTGGAGC TGTAAAGTTT GAGGTGAAAC 121 TGAAGCCATC GCCAAATTTG TTTTGTGCAC GGCCTTCTGT TAAGTTGAAT CAAAGGAGGG 181 TGTTAACCAT TAGAGCTAGC AAGGAAGGGC ATGATAATGG GTCTAGCTCA GGGCCCTTGA 241 GAAAGATGGG GTTGACTGAT GAGGAGTGTG AGGCTGCTGT AGTTGCCGGA AATGTACCTG 301 AAGCTCCTCC GGTTCCACCA AAGCCGGCTG CACCTGACGG TACCCCTATT GTGTCTTCAC 361 TGCCAATTAA TAGGAGACCA CGCCGTAATC GTAGGTCGTC AGCAGCAAGA GCTGCATTCC 421 AGGAAACAAA TATAAGCCCT GCAAATCTTG TATATCCACT ATTTATTCAT GAGGGTGAAG 481 AGGACACACC TATTGGAGCA ATGCCTGGAT GTTATAGGCT TGGATGGAGG CATGGTCTTG 541 TTGAAGAGGT CGCAAAGGCA AGGGATGTTG GAGTCAACAG CATTGTGCT Predicted gene structure (within gDNA segment 41844 to 47706): Exon 1 42444 42479 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 42480 43240 ( 761 n); Pd: 0.998 (s: 0), Pa: 0.974 (s: 1.00) Exon 2 43241 43566 ( 326 n); cDNA 37 362 ( 326 n); score: 1.000 Intron 2 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 44683 44794 ( 112 n); cDNA 363 474 ( 112 n); score: 1.000 Intron 3 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 4 44867 44940 ( 74 n); cDNA 475 548 ( 74 n); score: 1.000 Intron 4 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 47056 47096 ( 41 n); cDNA 549 589 ( 41 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E321051+ 1.000 589 1.000 C PGS_C08HBa0037O11.1+_SGN-E321051+ (42444 42479,43241 43566,44683 44794,44867 44940,47056 47096) Alignment (genomic DNA sequence = upper lines): TTCAGATAAG ATTATTCAAC TCTCCTTCCT TCAAAGGTAA AATTTTTTGC TCCTCTTTTA 42503 |||||||||| |||||||||| |||||||||| |||||| TTCAGATAAG ATTATTCAAC TCTCCTTCCT TCAAAG.... .......... .......... 36 CTTGGTGTTC TGTAAAATTA CTTGAGAAAA ATCACATCTT TTGGCTCAAT TTTGCTTTTC 42563 .......... .......... .......... .......... .......... .......... 36 AATACCTCAA ATTGTCAATT CTTGTAATAT TAGCTCTTTT GGTTTTACTC TAGTTGATTT 42623 .......... .......... .......... .......... .......... .......... 36 ATACATTTTG AATTCACTTT GTTTTGCCAA TTGATTGAGA AAATTATATG TTAAGCTCAA 42683 .......... .......... .......... .......... .......... .......... 36 TTATGGTTTG GAATGCTCAA AATCATTTTT TTTTTGGGTA GGTGAGTGGG TGGGTGGTAG 42743 .......... .......... .......... .......... .......... .......... 36 GGGTTGTTTC TGTTATTGGG TTTGCTTCAG TTGGAGAGAT GAGTTTGAAA GTTCCTATCT 42803 .......... .......... .......... .......... .......... .......... 36 TTTTTGGGTT TTATCCAAAT AGCTCAAGAA ATCATATATT CATCTCCATT GTGCTTACAA 42863 .......... .......... .......... .......... .......... .......... 36 ATGCTAAAAT TTCTAATTTT GTAATGAAAG TGTTTCTAGG TTCTTGTTGT TATTGGTTTT 42923 .......... .......... .......... .......... .......... .......... 36 TTTAACAGTA TCATTAGATA AAATTTGGGT TTGGGCCAGA TTTTTGAGAA AATCACATGG 42983 .......... .......... .......... .......... .......... .......... 36 TATGCTCAAT TATGTTTTGG AATGCTCAAA TTCCAATTTT GTGATGTACT GTTTTTCATA 43043 .......... .......... .......... .......... .......... .......... 36 TTTTTTTTTG TTATTATGTG TGGATTTGTT GCAGTAAAAT GATGCATTTG AAGTTCGTAG 43103 .......... .......... .......... .......... .......... .......... 36 CTAAATTATG CTTTGTAAAG CTCAGAATTC CATCTGTAAA ATATGATCTT TTCGGGTCTT 43163 .......... .......... .......... .......... .......... .......... 36 CGTGTTATGG GATTTTGAGT TGTGTGCATA TTATGGGATT TCAAATTGTA ATATATGCAC 43223 .......... .......... .......... .......... .......... .......... 36 TTTCCCTCAT ATTGTAGTGC TGCTTATCTG AGCAATCATG GCTTCTGCGG CAATGTTGAA 43283 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......TGC TGCTTATCTG AGCAATCATG GCTTCTGCGG CAATGTTGAA 79 TGCACCTTGT AATATTGGAG CTGTAAAGTT TGAGGTGAAA CTGAAGCCAT CGCCAAATTT 43343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACCTTGT AATATTGGAG CTGTAAAGTT TGAGGTGAAA CTGAAGCCAT CGCCAAATTT 139 GTTTTGTGCA CGGCCTTCTG TTAAGTTGAA TCAAAGGAGG GTGTTAACCA TTAGAGCTAG 43403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGTGCA CGGCCTTCTG TTAAGTTGAA TCAAAGGAGG GTGTTAACCA TTAGAGCTAG 199 CAAGGAAGGG CATGATAATG GGTCTAGCTC AGGGCCCTTG AGAAAGATGG GGTTGACTGA 43463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAAGGG CATGATAATG GGTCTAGCTC AGGGCCCTTG AGAAAGATGG GGTTGACTGA 259 TGAGGAGTGT GAGGCTGCTG TAGTTGCCGG AAATGTACCT GAAGCTCCTC CGGTTCCACC 43523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGAGTGT GAGGCTGCTG TAGTTGCCGG AAATGTACCT GAAGCTCCTC CGGTTCCACC 319 AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA CTGGTTAGTT TTCAGACATC 43583 |||||||||| |||||||||| |||||||||| |||||||||| ||| AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA CTG....... .......... 362 ATTATTTTTA ATTATGCCAA TTTTGCCATT TTAGAGATGG CGAGGAAGTG TTAAGTGGAC 43643 .......... .......... .......... .......... .......... .......... 362 CACCTTTTTC ATTAGTTTTG GAGGACTGTT TTGATTGCTT ATTGGCTTTG GTTTTGGTGG 43703 .......... .......... .......... .......... .......... .......... 362 CATATTCTCT AATCTGCTAA ACGTTATTTT CTAATCTCCG TATCAAATTG TTACAGGAAT 43763 .......... .......... .......... .......... .......... .......... 362 TAGATGTTTC ATGAGTCCAG AGTGTTTGAT TTGTTTGTAA TTGAACTAGC CAGATGTAAG 43823 .......... .......... .......... .......... .......... .......... 362 TTGGATACTA TGGTGTATTT TACATGTAAT ATACATTGTT TCTGAATTAC AAGTAACTTA 43883 .......... .......... .......... .......... .......... .......... 362 CCAACTGTCA AAATAGCAGA AGCAGTGGAG AACAAATTGC TCTGACAACT TAGTCATAAT 43943 .......... .......... .......... .......... .......... .......... 362 TGAGTACAGG CATCTCCATA AATGATAACT AACTTAGGAT ATTAAAAATG GATTCATCTA 44003 .......... .......... .......... .......... .......... .......... 362 CTGAATTGAG GCAAAAATTT CATAAAATGC TAGTACTGTA TTGGAAGACT GCTTAACTAT 44063 .......... .......... .......... .......... .......... .......... 362 TGTTGATGGG TGTTATTACA TTTGAATTCA AGATTCTTTC AAACATTTAT CCAGAGTTCT 44123 .......... .......... .......... .......... .......... .......... 362 AGTTACAGAA AGGCGAAAGC CTTATAAAGG AAAGTGATCA TACTTTGAGA AAATTACACC 44183 .......... .......... .......... .......... .......... .......... 362 GGACTATAAA ATCTTGAAAT TGACAGATAA GGTCTAACGA CAACTTCTTT GAACATCTTT 44243 .......... .......... .......... .......... .......... .......... 362 GACTATTCTT ATCTGGATGG AGGATGCTGA ATGTTGATGC GATACTTGCA AATTACATGA 44303 .......... .......... .......... .......... .......... .......... 362 TATTTACTTG TAGTGTATTT CTGGTATTTT TAGAACATTG AGGGTCCTTA TTCCATTTAC 44363 .......... .......... .......... .......... .......... .......... 362 ACAAGATGAT CAGCGATCTT TGTGAGACAT CCCTATGATT ACTTGACTCT GAAGTGGTGT 44423 .......... .......... .......... .......... .......... .......... 362 AGTTAATATT TTATCCTTCA ACTTCTAGAA AAAAATATCC TTCAACTTCT ACTCTTCTTG 44483 .......... .......... .......... .......... .......... .......... 362 TAGGTTGTCA GTGGGTACTA CATTTATAAT TTTGTAAGTA ATAGTGTTAA CTTGTTTAGT 44543 .......... .......... .......... .......... .......... .......... 362 TTGTATAACT GATAGCATCT TGGTTGAATT GTTGGATGGT ATGGTGATAA TGCTTTAATA 44603 .......... .......... .......... .......... .......... .......... 362 TAGACTCAAC ACTGCATCAG AAGTTGATAG ATTGATTTGC TATGTGCCTG TAGCTAATGA 44663 .......... .......... .......... .......... .......... .......... 362 CTGGATGTTG CTTGTATAGC CAATTAATAG GAGACCACGC CGTAATCGTA GGTCGTCAGC 44723 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........C CAATTAATAG GAGACCACGC CGTAATCGTA GGTCGTCAGC 403 AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA AATCTTGTAT ATCCACTATT 44783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA AATCTTGTAT ATCCACTATT 463 TATTCATGAG GGTGAGTACT TGTCTGAATT CCTCTCTGCT TATAACATGT ATCAATCTGT 44843 |||||||||| | TATTCATGAG G......... .......... .......... .......... .......... 474 TCTTACGAAT CACACACTTG CAGGTGAAGA GGACACACCT ATTGGAGCAA TGCCTGGATG 44903 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTGAAGA GGACACACCT ATTGGAGCAA TGCCTGGATG 511 TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAGGTC GGTGAGCTAT CCCTAGGATT 44963 |||||||||| |||||||||| |||||||||| ||||||| TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAG... .......... .......... 548 CTTTGTCCTC TATAATGTCT TTTTTTAGAT CAGAATTTCA GCATTTTGGT TCCTTAATTC 45023 .......... .......... .......... .......... .......... .......... 548 AATTCTTCTT TGTCTAATTG ATCTTGTCAT ATAATCCTGC TCCCTGTTCT TCCAAATTTT 45083 .......... .......... .......... .......... .......... .......... 548 AGCTGGTGAT AATGAAGTAT CTGATGCATT TGATCACATA AATAGCGAGC AATGTTCTTT 45143 .......... .......... .......... .......... .......... .......... 548 ATCAAGTATC TAATGTTTAT GATAGGTGGA AGGTAGTTTC GTTTAAGGCA GCCTGACCAC 45203 .......... .......... .......... .......... .......... .......... 548 CGTAACTCTA CTTTGGGCCA TAAGTAGCTC TCTCCTTGAT TAATTTTGAT ATGTTGACCT 45263 .......... .......... .......... .......... .......... .......... 548 TGTAGCCCTG CTTTGTATTG GTTCACAGTG TATCTAATTG ATGATGATGT GCTGCATTGG 45323 .......... .......... .......... .......... .......... .......... 548 TCTTGTTGCT ATGATTTTGC TATATCTTGA GGGTGATTTG CTTTCCATTG TCCATTTGTT 45383 .......... .......... .......... .......... .......... .......... 548 TTCCATTATG TATGTTATTA TGACCAGACC AGTATCATTA CAATATTGCT AGTATTAATG 45443 .......... .......... .......... .......... .......... .......... 548 ATAAAAACCA TTATCATTAC ATTATTGCTG GTATCAATGA TCAAAGTTTT ACCATAGCAT 45503 .......... .......... .......... .......... .......... .......... 548 TAGGGGTAAA GTGTCTTTCT TGTTTGGTGA TCAGTCAACG AAGTCATTCT GGATAAACAA 45563 .......... .......... .......... .......... .......... .......... 548 AACGCTATCC TCGTAATTTG TTGTAGGTTT TTATTTTTCA ATTTTCGATG TTGTATTTAT 45623 .......... .......... .......... .......... .......... .......... 548 TGGAGAGGGG TAGAGGGGCA GAGGGGCAGG CCCATTATTC ACTTTGTTTT AAACCATGCT 45683 .......... .......... .......... .......... .......... .......... 548 CCAAGGGCTA GGGGGATTTC TCTGTTACAA AAAAAAAAGA TTTCCTCTTT TTGGGTTGGG 45743 .......... .......... .......... .......... .......... .......... 548 AAAATACATC ACCGGATTTT AGGCTAAATA AAGACTATGA TCATTTGTGG GTACCAGTCA 45803 .......... .......... .......... .......... .......... .......... 548 CACATGTCAG GATTATCAAC GGACATGCCT GTCTAGATTC TGACTGCTCT TGTTTGGCAA 45863 .......... .......... .......... .......... .......... .......... 548 AAATAATTAA AATAACGCTG TCAAGAACTC TGCTCTCAGA TTCCTCTGAG GCACTCGCGA 45923 .......... .......... .......... .......... .......... .......... 548 TGTGTAATAA GAGAGGTGTG TGGTCTGGAC ATATTATTCA GTATTTTAAA TATATTCAAG 45983 .......... .......... .......... .......... .......... .......... 548 ACTTCAATTA CAGATACCAG AACAAAGTAT AAATTTCGAA TTCAGGTCCA ATATTCATTG 46043 .......... .......... .......... .......... .......... .......... 548 TAACTTTGTT AGGTTGGGTA GGATGAAAGA CATTATTTTT TCAAAAGAAA GAAAGACCTG 46103 .......... .......... .......... .......... .......... .......... 548 CAAAGAATTC CTTTTCTTTT TTTTCACCAA AACAGTATTT AATTATAATC TTCCAGTGAA 46163 .......... .......... .......... .......... .......... .......... 548 TAAATCGATC TTTTTTTCCC ATCTCAAAAA AGACTGATTT ATTCACTGGA AGATGATAGT 46223 .......... .......... .......... .......... .......... .......... 548 TAAATTCTGG TTTGGTAAAA AGGAAATCTT TGCAGGTCCT AGGTGCAGGT TTAACTTTTA 46283 .......... .......... .......... .......... .......... .......... 548 AGTGTAGATA TCAGGAAAAA GGGAAGGACA ATAAACAGAG AAAAAGAAAA AGAAAAAGAA 46343 .......... .......... .......... .......... .......... .......... 548 ATAGAAATGC ATACAACAAC TATTAAAATT TACTACTACA CCTCAATCAC AAGCAAATTG 46403 .......... .......... .......... .......... .......... .......... 548 GGGGATCAGA CAAGCTACCA TGTATACTCA CGTATATACT TATTTGCTAA TGGGTTGAGA 46463 .......... .......... .......... .......... .......... .......... 548 ATGTATAGGA TGCTCTTTTA ATTGGAGGAA ATTACCTTGG AGGCTAATAA GTACTTTGGC 46523 .......... .......... .......... .......... .......... .......... 548 GATAATTGGT ACTTTTACAA TTCTTTTGTC CATGTTATTG ACAGCCTCAT GTACAATATT 46583 .......... .......... .......... .......... .......... .......... 548 CAAGGAAACC TACATTTACT TGAGTAGAAA TCAAACAAAG TACTTGTAAG CTAAAATTAG 46643 .......... .......... .......... .......... .......... .......... 548 TTGCTGTAAA TCTGTTGTAG CAGAAGTGGA GTCTCCAGTG GATGATACAT GGGTAGGCTA 46703 .......... .......... .......... .......... .......... .......... 548 TTATAGATGG GTCTGTATTG CACTCAATTG CTCATCTGCA GTTGCCGCCT CTGATTGAGA 46763 .......... .......... .......... .......... .......... .......... 548 AGTAAATACC AAATGGAACT TGAACATTTC TAGAATTTTA CCAGCTTCCA GAATATGATC 46823 .......... .......... .......... .......... .......... .......... 548 ATTCTTCACA CTTACTGTCA TATGCTTTTA GAGGGCTCAT ATAAGTCTTG TCGATGATTT 46883 .......... .......... .......... .......... .......... .......... 548 GGTTCCAAGC TTGCTGTCCG TGACACATAA TTTTCAGTAC TTAACAAAAC AACAAATTGG 46943 .......... .......... .......... .......... .......... .......... 548 CTTGGTTAAA GATACATCTA GATCATATTT AAGGATTCAA CTGCGATCAT AGCACCTTTG 47003 .......... .......... .......... .......... .......... .......... 548 TAATACTTCT GTGCATTCTT TTGAGCAAGT GGATTTACTT TTTCTTATGC AGGTCGCAAA 47063 |||||||| .......... .......... .......... .......... .......... ..GTCGCAAA 556 GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCT 47096 |||||||||| |||||||||| |||||||||| ||| GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCT 589 hqPGS_C08HBa0037O11.1+_SGN-E321051+ (42444 42479,43241 43566,44683 44794,44867 44940,47056 47096) ******************************************************************************** EST sequence 79 +strand 492 n (File: SGN-E320655+) 1 TCAGATAAGA TTATTCAACT CTCCTTCCTT CAAAGTGCTG CTTATCTGAG CAATCATGGC 61 TTCTGCGGCA ATGTTGAATG CACCTTGTAA TATTGGAGCT GTAAAGTTTG AGGTGAAACT 121 GAAGCCATCG CCAAATTTGT TTTGTGCACG GCCTTCTGTT AAGTTGAATC AAAGGAGGGT 181 GTTAACCATT AGAGCTAGCA AGGAAGGGCA TGATAATGGG TCTAGCTCAG GGCCCTTGAG 241 AAAGATGGGG TTGACTGATG AGGAGTGTGA GGCTGCTGTA GTTGCCGGAA ATGTACCTGA 301 AGCTCCTCCG GTTCCACCAA AGCCGGCTGC ACCTGACGGT ACCCCTATTG TGTCTTCACT 361 GCCAATTAAT AGGAGACCAC GCCGTAATCG TAGGTCGTCA GCAGCAAGAG CTGCATTCCA 421 GGAAACAAAT ATAAGCCCTG CAAATCTTGT ATATCCACTA TTTATTCATG AGGGTGAAGA 481 GGACACACCT AT Predicted gene structure (within gDNA segment 41845 to 45558): Exon 1 42445 42479 ( 35 n); cDNA 1 35 ( 35 n); score: 1.000 Intron 1 42480 43240 ( 761 n); Pd: 0.998 (s: 0), Pa: 0.974 (s: 1.00) Exon 2 43241 43566 ( 326 n); cDNA 36 361 ( 326 n); score: 1.000 Intron 2 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 44683 44794 ( 112 n); cDNA 362 473 ( 112 n); score: 1.000 Intron 3 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 0) Exon 4 44867 44885 ( 19 n); cDNA 474 492 ( 19 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E320655+ 1.000 492 1.000 C PGS_C08HBa0037O11.1+_SGN-E320655+ (42445 42479,43241 43566,44683 44794,44867 44885) Alignment (genomic DNA sequence = upper lines): TCAGATAAGA TTATTCAACT CTCCTTCCTT CAAAGGTAAA ATTTTTTGCT CCTCTTTTAC 42504 |||||||||| |||||||||| |||||||||| ||||| TCAGATAAGA TTATTCAACT CTCCTTCCTT CAAAG..... .......... .......... 35 TTGGTGTTCT GTAAAATTAC TTGAGAAAAA TCACATCTTT TGGCTCAATT TTGCTTTTCA 42564 .......... .......... .......... .......... .......... .......... 35 ATACCTCAAA TTGTCAATTC TTGTAATATT AGCTCTTTTG GTTTTACTCT AGTTGATTTA 42624 .......... .......... .......... .......... .......... .......... 35 TACATTTTGA ATTCACTTTG TTTTGCCAAT TGATTGAGAA AATTATATGT TAAGCTCAAT 42684 .......... .......... .......... .......... .......... .......... 35 TATGGTTTGG AATGCTCAAA ATCATTTTTT TTTTGGGTAG GTGAGTGGGT GGGTGGTAGG 42744 .......... .......... .......... .......... .......... .......... 35 GGTTGTTTCT GTTATTGGGT TTGCTTCAGT TGGAGAGATG AGTTTGAAAG TTCCTATCTT 42804 .......... .......... .......... .......... .......... .......... 35 TTTTGGGTTT TATCCAAATA GCTCAAGAAA TCATATATTC ATCTCCATTG TGCTTACAAA 42864 .......... .......... .......... .......... .......... .......... 35 TGCTAAAATT TCTAATTTTG TAATGAAAGT GTTTCTAGGT TCTTGTTGTT ATTGGTTTTT 42924 .......... .......... .......... .......... .......... .......... 35 TTAACAGTAT CATTAGATAA AATTTGGGTT TGGGCCAGAT TTTTGAGAAA ATCACATGGT 42984 .......... .......... .......... .......... .......... .......... 35 ATGCTCAATT ATGTTTTGGA ATGCTCAAAT TCCAATTTTG TGATGTACTG TTTTTCATAT 43044 .......... .......... .......... .......... .......... .......... 35 TTTTTTTTGT TATTATGTGT GGATTTGTTG CAGTAAAATG ATGCATTTGA AGTTCGTAGC 43104 .......... .......... .......... .......... .......... .......... 35 TAAATTATGC TTTGTAAAGC TCAGAATTCC ATCTGTAAAA TATGATCTTT TCGGGTCTTC 43164 .......... .......... .......... .......... .......... .......... 35 GTGTTATGGG ATTTTGAGTT GTGTGCATAT TATGGGATTT CAAATTGTAA TATATGCACT 43224 .......... .......... .......... .......... .......... .......... 35 TTCCCTCATA TTGTAGTGCT GCTTATCTGA GCAATCATGG CTTCTGCGGC AATGTTGAAT 43284 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TGCT GCTTATCTGA GCAATCATGG CTTCTGCGGC AATGTTGAAT 79 GCACCTTGTA ATATTGGAGC TGTAAAGTTT GAGGTGAAAC TGAAGCCATC GCCAAATTTG 43344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCTTGTA ATATTGGAGC TGTAAAGTTT GAGGTGAAAC TGAAGCCATC GCCAAATTTG 139 TTTTGTGCAC GGCCTTCTGT TAAGTTGAAT CAAAGGAGGG TGTTAACCAT TAGAGCTAGC 43404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTGCAC GGCCTTCTGT TAAGTTGAAT CAAAGGAGGG TGTTAACCAT TAGAGCTAGC 199 AAGGAAGGGC ATGATAATGG GTCTAGCTCA GGGCCCTTGA GAAAGATGGG GTTGACTGAT 43464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGGGC ATGATAATGG GTCTAGCTCA GGGCCCTTGA GAAAGATGGG GTTGACTGAT 259 GAGGAGTGTG AGGCTGCTGT AGTTGCCGGA AATGTACCTG AAGCTCCTCC GGTTCCACCA 43524 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGTGTG AGGCTGCTGT AGTTGCCGGA AATGTACCTG AAGCTCCTCC GGTTCCACCA 319 AAGCCGGCTG CACCTGACGG TACCCCTATT GTGTCTTCAC TGGTTAGTTT TCAGACATCA 43584 |||||||||| |||||||||| |||||||||| |||||||||| || AAGCCGGCTG CACCTGACGG TACCCCTATT GTGTCTTCAC TG........ .......... 361 TTATTTTTAA TTATGCCAAT TTTGCCATTT TAGAGATGGC GAGGAAGTGT TAAGTGGACC 43644 .......... .......... .......... .......... .......... .......... 361 ACCTTTTTCA TTAGTTTTGG AGGACTGTTT TGATTGCTTA TTGGCTTTGG TTTTGGTGGC 43704 .......... .......... .......... .......... .......... .......... 361 ATATTCTCTA ATCTGCTAAA CGTTATTTTC TAATCTCCGT ATCAAATTGT TACAGGAATT 43764 .......... .......... .......... .......... .......... .......... 361 AGATGTTTCA TGAGTCCAGA GTGTTTGATT TGTTTGTAAT TGAACTAGCC AGATGTAAGT 43824 .......... .......... .......... .......... .......... .......... 361 TGGATACTAT GGTGTATTTT ACATGTAATA TACATTGTTT CTGAATTACA AGTAACTTAC 43884 .......... .......... .......... .......... .......... .......... 361 CAACTGTCAA AATAGCAGAA GCAGTGGAGA ACAAATTGCT CTGACAACTT AGTCATAATT 43944 .......... .......... .......... .......... .......... .......... 361 GAGTACAGGC ATCTCCATAA ATGATAACTA ACTTAGGATA TTAAAAATGG ATTCATCTAC 44004 .......... .......... .......... .......... .......... .......... 361 TGAATTGAGG CAAAAATTTC ATAAAATGCT AGTACTGTAT TGGAAGACTG CTTAACTATT 44064 .......... .......... .......... .......... .......... .......... 361 GTTGATGGGT GTTATTACAT TTGAATTCAA GATTCTTTCA AACATTTATC CAGAGTTCTA 44124 .......... .......... .......... .......... .......... .......... 361 GTTACAGAAA GGCGAAAGCC TTATAAAGGA AAGTGATCAT ACTTTGAGAA AATTACACCG 44184 .......... .......... .......... .......... .......... .......... 361 GACTATAAAA TCTTGAAATT GACAGATAAG GTCTAACGAC AACTTCTTTG AACATCTTTG 44244 .......... .......... .......... .......... .......... .......... 361 ACTATTCTTA TCTGGATGGA GGATGCTGAA TGTTGATGCG ATACTTGCAA ATTACATGAT 44304 .......... .......... .......... .......... .......... .......... 361 ATTTACTTGT AGTGTATTTC TGGTATTTTT AGAACATTGA GGGTCCTTAT TCCATTTACA 44364 .......... .......... .......... .......... .......... .......... 361 CAAGATGATC AGCGATCTTT GTGAGACATC CCTATGATTA CTTGACTCTG AAGTGGTGTA 44424 .......... .......... .......... .......... .......... .......... 361 GTTAATATTT TATCCTTCAA CTTCTAGAAA AAAATATCCT TCAACTTCTA CTCTTCTTGT 44484 .......... .......... .......... .......... .......... .......... 361 AGGTTGTCAG TGGGTACTAC ATTTATAATT TTGTAAGTAA TAGTGTTAAC TTGTTTAGTT 44544 .......... .......... .......... .......... .......... .......... 361 TGTATAACTG ATAGCATCTT GGTTGAATTG TTGGATGGTA TGGTGATAAT GCTTTAATAT 44604 .......... .......... .......... .......... .......... .......... 361 AGACTCAACA CTGCATCAGA AGTTGATAGA TTGATTTGCT ATGTGCCTGT AGCTAATGAC 44664 .......... .......... .......... .......... .......... .......... 361 TGGATGTTGC TTGTATAGCC AATTAATAGG AGACCACGCC GTAATCGTAG GTCGTCAGCA 44724 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CC AATTAATAGG AGACCACGCC GTAATCGTAG GTCGTCAGCA 403 GCAAGAGCTG CATTCCAGGA AACAAATATA AGCCCTGCAA ATCTTGTATA TCCACTATTT 44784 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGAGCTG CATTCCAGGA AACAAATATA AGCCCTGCAA ATCTTGTATA TCCACTATTT 463 ATTCATGAGG GTGAGTACTT GTCTGAATTC CTCTCTGCTT ATAACATGTA TCAATCTGTT 44844 |||||||||| ATTCATGAGG .......... .......... .......... .......... .......... 473 CTTACGAATC ACACACTTGC AGGTGAAGAG GACACACCTA T 44885 |||||||| |||||||||| | .......... .......... ..GTGAAGAG GACACACCTA T 492 hqPGS_C08HBa0037O11.1+_SGN-E320655+ (42445 42479,43241 43566,44683 44794,44867 44885) ******************************************************************************** EST sequence 16 +strand 584 n (File: SGN-E326104+) 1 GATAAGATTA TTCAACTCTC CTTCCTTCAA AGTGCTGCTT ATCTGAGCAA TCATGGCTTC 61 TGCGGCAATG TTGAATGCAC CTTGTAATAT TGGAGCTGTA AAGTTTGAGG TGAAACTGAA 121 GCCATCGCCA AATTTGTTTT GTGCACGGCC TTCTGTTAAG TTGAATCAAA GGAGGGTGTT 181 AACCATTAGA GCTAGCAAGG AAGGGCATGA TAATGGGTCT AGCTCAGGGC CCTTGAGAAA 241 GATGGGGTTG ACTGATGAGG AGTGTGAGGC TGCTGTAGTT GCCGGAAATG TACCTGAAGC 301 TCCTCCGGTT CCACCAAAGC CGGCTGCACC TGACGGTACC CCTATTGTGT CTTCACTGCC 361 AATTAATAGG AGACCACGCC GTAATCGTAG GTCGTCAGCA GCAAGAGCTG CATTCCAGGA 421 AACAAATATA AGCCCTGCAA ATCTTGTATA TCCACTATTT ATTCATGAGG GTGAAGAGGA 481 CACACCTATT GGAGCAATGC CTGGATGTTA TANGCTTGGA TGGAGGCATG GTCTTGTTGA 541 AGAGGTCGCA AAGGCAAGGG ATGTTGGAGT CAACAGCATT GTGC Predicted gene structure (within gDNA segment 41848 to 47705): Exon 1 42448 42479 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 42480 43240 ( 761 n); Pd: 0.998 (s: 0), Pa: 0.974 (s: 1.00) Exon 2 43241 43566 ( 326 n); cDNA 33 358 ( 326 n); score: 1.000 Intron 2 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 44683 44794 ( 112 n); cDNA 359 470 ( 112 n); score: 1.000 Intron 3 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 0.98) Exon 4 44867 44940 ( 74 n); cDNA 471 544 ( 74 n); score: 0.986 Intron 4 44941 47055 (2115 n); Pd: 0.872 (s: 0.98), Pa: 0.993 (s: 1.00) Exon 5 47056 47095 ( 40 n); cDNA 545 584 ( 40 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E326104+ 0.998 584 1.000 C PGS_C08HBa0037O11.1+_SGN-E326104+ (42448 42479,43241 43566,44683 44794,44867 44940,47056 47095) Alignment (genomic DNA sequence = upper lines): GATAAGATTA TTCAACTCTC CTTCCTTCAA AGGTAAAATT TTTTGCTCCT CTTTTACTTG 42507 |||||||||| |||||||||| |||||||||| || GATAAGATTA TTCAACTCTC CTTCCTTCAA AG........ .......... .......... 32 GTGTTCTGTA AAATTACTTG AGAAAAATCA CATCTTTTGG CTCAATTTTG CTTTTCAATA 42567 .......... .......... .......... .......... .......... .......... 32 CCTCAAATTG TCAATTCTTG TAATATTAGC TCTTTTGGTT TTACTCTAGT TGATTTATAC 42627 .......... .......... .......... .......... .......... .......... 32 ATTTTGAATT CACTTTGTTT TGCCAATTGA TTGAGAAAAT TATATGTTAA GCTCAATTAT 42687 .......... .......... .......... .......... .......... .......... 32 GGTTTGGAAT GCTCAAAATC ATTTTTTTTT TGGGTAGGTG AGTGGGTGGG TGGTAGGGGT 42747 .......... .......... .......... .......... .......... .......... 32 TGTTTCTGTT ATTGGGTTTG CTTCAGTTGG AGAGATGAGT TTGAAAGTTC CTATCTTTTT 42807 .......... .......... .......... .......... .......... .......... 32 TGGGTTTTAT CCAAATAGCT CAAGAAATCA TATATTCATC TCCATTGTGC TTACAAATGC 42867 .......... .......... .......... .......... .......... .......... 32 TAAAATTTCT AATTTTGTAA TGAAAGTGTT TCTAGGTTCT TGTTGTTATT GGTTTTTTTA 42927 .......... .......... .......... .......... .......... .......... 32 ACAGTATCAT TAGATAAAAT TTGGGTTTGG GCCAGATTTT TGAGAAAATC ACATGGTATG 42987 .......... .......... .......... .......... .......... .......... 32 CTCAATTATG TTTTGGAATG CTCAAATTCC AATTTTGTGA TGTACTGTTT TTCATATTTT 43047 .......... .......... .......... .......... .......... .......... 32 TTTTTGTTAT TATGTGTGGA TTTGTTGCAG TAAAATGATG CATTTGAAGT TCGTAGCTAA 43107 .......... .......... .......... .......... .......... .......... 32 ATTATGCTTT GTAAAGCTCA GAATTCCATC TGTAAAATAT GATCTTTTCG GGTCTTCGTG 43167 .......... .......... .......... .......... .......... .......... 32 TTATGGGATT TTGAGTTGTG TGCATATTAT GGGATTTCAA ATTGTAATAT ATGCACTTTC 43227 .......... .......... .......... .......... .......... .......... 32 CCTCATATTG TAGTGCTGCT TATCTGAGCA ATCATGGCTT CTGCGGCAAT GTTGAATGCA 43287 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...TGCTGCT TATCTGAGCA ATCATGGCTT CTGCGGCAAT GTTGAATGCA 79 CCTTGTAATA TTGGAGCTGT AAAGTTTGAG GTGAAACTGA AGCCATCGCC AAATTTGTTT 43347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGTAATA TTGGAGCTGT AAAGTTTGAG GTGAAACTGA AGCCATCGCC AAATTTGTTT 139 TGTGCACGGC CTTCTGTTAA GTTGAATCAA AGGAGGGTGT TAACCATTAG AGCTAGCAAG 43407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCACGGC CTTCTGTTAA GTTGAATCAA AGGAGGGTGT TAACCATTAG AGCTAGCAAG 199 GAAGGGCATG ATAATGGGTC TAGCTCAGGG CCCTTGAGAA AGATGGGGTT GACTGATGAG 43467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGGCATG ATAATGGGTC TAGCTCAGGG CCCTTGAGAA AGATGGGGTT GACTGATGAG 259 GAGTGTGAGG CTGCTGTAGT TGCCGGAAAT GTACCTGAAG CTCCTCCGGT TCCACCAAAG 43527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGTGAGG CTGCTGTAGT TGCCGGAAAT GTACCTGAAG CTCCTCCGGT TCCACCAAAG 319 CCGGCTGCAC CTGACGGTAC CCCTATTGTG TCTTCACTGG TTAGTTTTCA GACATCATTA 43587 |||||||||| |||||||||| |||||||||| ||||||||| CCGGCTGCAC CTGACGGTAC CCCTATTGTG TCTTCACTG. .......... .......... 358 TTTTTAATTA TGCCAATTTT GCCATTTTAG AGATGGCGAG GAAGTGTTAA GTGGACCACC 43647 .......... .......... .......... .......... .......... .......... 358 TTTTTCATTA GTTTTGGAGG ACTGTTTTGA TTGCTTATTG GCTTTGGTTT TGGTGGCATA 43707 .......... .......... .......... .......... .......... .......... 358 TTCTCTAATC TGCTAAACGT TATTTTCTAA TCTCCGTATC AAATTGTTAC AGGAATTAGA 43767 .......... .......... .......... .......... .......... .......... 358 TGTTTCATGA GTCCAGAGTG TTTGATTTGT TTGTAATTGA ACTAGCCAGA TGTAAGTTGG 43827 .......... .......... .......... .......... .......... .......... 358 ATACTATGGT GTATTTTACA TGTAATATAC ATTGTTTCTG AATTACAAGT AACTTACCAA 43887 .......... .......... .......... .......... .......... .......... 358 CTGTCAAAAT AGCAGAAGCA GTGGAGAACA AATTGCTCTG ACAACTTAGT CATAATTGAG 43947 .......... .......... .......... .......... .......... .......... 358 TACAGGCATC TCCATAAATG ATAACTAACT TAGGATATTA AAAATGGATT CATCTACTGA 44007 .......... .......... .......... .......... .......... .......... 358 ATTGAGGCAA AAATTTCATA AAATGCTAGT ACTGTATTGG AAGACTGCTT AACTATTGTT 44067 .......... .......... .......... .......... .......... .......... 358 GATGGGTGTT ATTACATTTG AATTCAAGAT TCTTTCAAAC ATTTATCCAG AGTTCTAGTT 44127 .......... .......... .......... .......... .......... .......... 358 ACAGAAAGGC GAAAGCCTTA TAAAGGAAAG TGATCATACT TTGAGAAAAT TACACCGGAC 44187 .......... .......... .......... .......... .......... .......... 358 TATAAAATCT TGAAATTGAC AGATAAGGTC TAACGACAAC TTCTTTGAAC ATCTTTGACT 44247 .......... .......... .......... .......... .......... .......... 358 ATTCTTATCT GGATGGAGGA TGCTGAATGT TGATGCGATA CTTGCAAATT ACATGATATT 44307 .......... .......... .......... .......... .......... .......... 358 TACTTGTAGT GTATTTCTGG TATTTTTAGA ACATTGAGGG TCCTTATTCC ATTTACACAA 44367 .......... .......... .......... .......... .......... .......... 358 GATGATCAGC GATCTTTGTG AGACATCCCT ATGATTACTT GACTCTGAAG TGGTGTAGTT 44427 .......... .......... .......... .......... .......... .......... 358 AATATTTTAT CCTTCAACTT CTAGAAAAAA ATATCCTTCA ACTTCTACTC TTCTTGTAGG 44487 .......... .......... .......... .......... .......... .......... 358 TTGTCAGTGG GTACTACATT TATAATTTTG TAAGTAATAG TGTTAACTTG TTTAGTTTGT 44547 .......... .......... .......... .......... .......... .......... 358 ATAACTGATA GCATCTTGGT TGAATTGTTG GATGGTATGG TGATAATGCT TTAATATAGA 44607 .......... .......... .......... .......... .......... .......... 358 CTCAACACTG CATCAGAAGT TGATAGATTG ATTTGCTATG TGCCTGTAGC TAATGACTGG 44667 .......... .......... .......... .......... .......... .......... 358 ATGTTGCTTG TATAGCCAAT TAATAGGAGA CCACGCCGTA ATCGTAGGTC GTCAGCAGCA 44727 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CCAAT TAATAGGAGA CCACGCCGTA ATCGTAGGTC GTCAGCAGCA 403 AGAGCTGCAT TCCAGGAAAC AAATATAAGC CCTGCAAATC TTGTATATCC ACTATTTATT 44787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCTGCAT TCCAGGAAAC AAATATAAGC CCTGCAAATC TTGTATATCC ACTATTTATT 463 CATGAGGGTG AGTACTTGTC TGAATTCCTC TCTGCTTATA ACATGTATCA ATCTGTTCTT 44847 ||||||| CATGAGG... .......... .......... .......... .......... .......... 470 ACGAATCACA CACTTGCAGG TGAAGAGGAC ACACCTATTG GAGCAATGCC TGGATGTTAT 44907 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TGAAGAGGAC ACACCTATTG GAGCAATGCC TGGATGTTAT 511 AGGCTTGGAT GGAGGCATGG TCTTGTTGAA GAGGTCGGTG AGCTATCCCT AGGATTCTTT 44967 | |||||||| |||||||||| |||||||||| ||| ANGCTTGGAT GGAGGCATGG TCTTGTTGAA GAG....... .......... .......... 544 GTCCTCTATA ATGTCTTTTT TTAGATCAGA ATTTCAGCAT TTTGGTTCCT TAATTCAATT 45027 .......... .......... .......... .......... .......... .......... 544 CTTCTTTGTC TAATTGATCT TGTCATATAA TCCTGCTCCC TGTTCTTCCA AATTTTAGCT 45087 .......... .......... .......... .......... .......... .......... 544 GGTGATAATG AAGTATCTGA TGCATTTGAT CACATAAATA GCGAGCAATG TTCTTTATCA 45147 .......... .......... .......... .......... .......... .......... 544 AGTATCTAAT GTTTATGATA GGTGGAAGGT AGTTTCGTTT AAGGCAGCCT GACCACCGTA 45207 .......... .......... .......... .......... .......... .......... 544 ACTCTACTTT GGGCCATAAG TAGCTCTCTC CTTGATTAAT TTTGATATGT TGACCTTGTA 45267 .......... .......... .......... .......... .......... .......... 544 GCCCTGCTTT GTATTGGTTC ACAGTGTATC TAATTGATGA TGATGTGCTG CATTGGTCTT 45327 .......... .......... .......... .......... .......... .......... 544 GTTGCTATGA TTTTGCTATA TCTTGAGGGT GATTTGCTTT CCATTGTCCA TTTGTTTTCC 45387 .......... .......... .......... .......... .......... .......... 544 ATTATGTATG TTATTATGAC CAGACCAGTA TCATTACAAT ATTGCTAGTA TTAATGATAA 45447 .......... .......... .......... .......... .......... .......... 544 AAACCATTAT CATTACATTA TTGCTGGTAT CAATGATCAA AGTTTTACCA TAGCATTAGG 45507 .......... .......... .......... .......... .......... .......... 544 GGTAAAGTGT CTTTCTTGTT TGGTGATCAG TCAACGAAGT CATTCTGGAT AAACAAAACG 45567 .......... .......... .......... .......... .......... .......... 544 CTATCCTCGT AATTTGTTGT AGGTTTTTAT TTTTCAATTT TCGATGTTGT ATTTATTGGA 45627 .......... .......... .......... .......... .......... .......... 544 GAGGGGTAGA GGGGCAGAGG GGCAGGCCCA TTATTCACTT TGTTTTAAAC CATGCTCCAA 45687 .......... .......... .......... .......... .......... .......... 544 GGGCTAGGGG GATTTCTCTG TTACAAAAAA AAAAGATTTC CTCTTTTTGG GTTGGGAAAA 45747 .......... .......... .......... .......... .......... .......... 544 TACATCACCG GATTTTAGGC TAAATAAAGA CTATGATCAT TTGTGGGTAC CAGTCACACA 45807 .......... .......... .......... .......... .......... .......... 544 TGTCAGGATT ATCAACGGAC ATGCCTGTCT AGATTCTGAC TGCTCTTGTT TGGCAAAAAT 45867 .......... .......... .......... .......... .......... .......... 544 AATTAAAATA ACGCTGTCAA GAACTCTGCT CTCAGATTCC TCTGAGGCAC TCGCGATGTG 45927 .......... .......... .......... .......... .......... .......... 544 TAATAAGAGA GGTGTGTGGT CTGGACATAT TATTCAGTAT TTTAAATATA TTCAAGACTT 45987 .......... .......... .......... .......... .......... .......... 544 CAATTACAGA TACCAGAACA AAGTATAAAT TTCGAATTCA GGTCCAATAT TCATTGTAAC 46047 .......... .......... .......... .......... .......... .......... 544 TTTGTTAGGT TGGGTAGGAT GAAAGACATT ATTTTTTCAA AAGAAAGAAA GACCTGCAAA 46107 .......... .......... .......... .......... .......... .......... 544 GAATTCCTTT TCTTTTTTTT CACCAAAACA GTATTTAATT ATAATCTTCC AGTGAATAAA 46167 .......... .......... .......... .......... .......... .......... 544 TCGATCTTTT TTTCCCATCT CAAAAAAGAC TGATTTATTC ACTGGAAGAT GATAGTTAAA 46227 .......... .......... .......... .......... .......... .......... 544 TTCTGGTTTG GTAAAAAGGA AATCTTTGCA GGTCCTAGGT GCAGGTTTAA CTTTTAAGTG 46287 .......... .......... .......... .......... .......... .......... 544 TAGATATCAG GAAAAAGGGA AGGACAATAA ACAGAGAAAA AGAAAAAGAA AAAGAAATAG 46347 .......... .......... .......... .......... .......... .......... 544 AAATGCATAC AACAACTATT AAAATTTACT ACTACACCTC AATCACAAGC AAATTGGGGG 46407 .......... .......... .......... .......... .......... .......... 544 ATCAGACAAG CTACCATGTA TACTCACGTA TATACTTATT TGCTAATGGG TTGAGAATGT 46467 .......... .......... .......... .......... .......... .......... 544 ATAGGATGCT CTTTTAATTG GAGGAAATTA CCTTGGAGGC TAATAAGTAC TTTGGCGATA 46527 .......... .......... .......... .......... .......... .......... 544 ATTGGTACTT TTACAATTCT TTTGTCCATG TTATTGACAG CCTCATGTAC AATATTCAAG 46587 .......... .......... .......... .......... .......... .......... 544 GAAACCTACA TTTACTTGAG TAGAAATCAA ACAAAGTACT TGTAAGCTAA AATTAGTTGC 46647 .......... .......... .......... .......... .......... .......... 544 TGTAAATCTG TTGTAGCAGA AGTGGAGTCT CCAGTGGATG ATACATGGGT AGGCTATTAT 46707 .......... .......... .......... .......... .......... .......... 544 AGATGGGTCT GTATTGCACT CAATTGCTCA TCTGCAGTTG CCGCCTCTGA TTGAGAAGTA 46767 .......... .......... .......... .......... .......... .......... 544 AATACCAAAT GGAACTTGAA CATTTCTAGA ATTTTACCAG CTTCCAGAAT ATGATCATTC 46827 .......... .......... .......... .......... .......... .......... 544 TTCACACTTA CTGTCATATG CTTTTAGAGG GCTCATATAA GTCTTGTCGA TGATTTGGTT 46887 .......... .......... .......... .......... .......... .......... 544 CCAAGCTTGC TGTCCGTGAC ACATAATTTT CAGTACTTAA CAAAACAACA AATTGGCTTG 46947 .......... .......... .......... .......... .......... .......... 544 GTTAAAGATA CATCTAGATC ATATTTAAGG ATTCAACTGC GATCATAGCA CCTTTGTAAT 47007 .......... .......... .......... .......... .......... .......... 544 ACTTCTGTGC ATTCTTTTGA GCAAGTGGAT TTACTTTTTC TTATGCAGGT CGCAAAGGCA 47067 || |||||||||| .......... .......... .......... .......... ........GT CGCAAAGGCA 556 AGGGATGTTG GAGTCAACAG CATTGTGC 47095 |||||||||| |||||||||| |||||||| AGGGATGTTG GAGTCAACAG CATTGTGC 584 hqPGS_C08HBa0037O11.1+_SGN-E326104+ (42448 42479,43241 43566,44683 44794,44867 44940,47056 47095) ******************************************************************************** EST sequence 24 +strand 283 n (File: SGN-E327418+) 1 GATAAGATTA TTCAACTCTC CTTCCTTCAA AGTGCTGCTT ATCTGAGCAA TCATGGCTTC 61 TGCGGCAATG TTGAATGCAC CTTGTAATAT TGGAGCTGTA AAGTTTGAGG TGAAACTGAA 121 GCCATCGCCA AATTTGTTTT GTGCACGGCC TTCTGTTAAG TTGAATCAAA GGAGGGTGTT 181 AACCATTAGA GCTAGCAAGG AAGGGCATGA TAATGGGTCT AGCTCCAGGC CCTTGAGAAA 241 GATGGGGTTG ACTGATGAGG AGTGTGAGGC TGCTGTAATT GCC Predicted gene structure (within gDNA segment 41848 to 44155): Exon 1 42448 42479 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 42480 43240 ( 761 n); Pd: 0.998 (s: 0), Pa: 0.974 (s: 1.00) Exon 2 43241 43491 ( 251 n); cDNA 33 283 ( 251 n); score: 0.988 MATCH C08HBa0037O11.1+ SGN-E327418+ 0.988 283 1.000 C PGS_C08HBa0037O11.1+_SGN-E327418+ (42448 42479,43241 43491) Alignment (genomic DNA sequence = upper lines): GATAAGATTA TTCAACTCTC CTTCCTTCAA AGGTAAAATT TTTTGCTCCT CTTTTACTTG 42507 |||||||||| |||||||||| |||||||||| || GATAAGATTA TTCAACTCTC CTTCCTTCAA AG........ .......... .......... 32 GTGTTCTGTA AAATTACTTG AGAAAAATCA CATCTTTTGG CTCAATTTTG CTTTTCAATA 42567 .......... .......... .......... .......... .......... .......... 32 CCTCAAATTG TCAATTCTTG TAATATTAGC TCTTTTGGTT TTACTCTAGT TGATTTATAC 42627 .......... .......... .......... .......... .......... .......... 32 ATTTTGAATT CACTTTGTTT TGCCAATTGA TTGAGAAAAT TATATGTTAA GCTCAATTAT 42687 .......... .......... .......... .......... .......... .......... 32 GGTTTGGAAT GCTCAAAATC ATTTTTTTTT TGGGTAGGTG AGTGGGTGGG TGGTAGGGGT 42747 .......... .......... .......... .......... .......... .......... 32 TGTTTCTGTT ATTGGGTTTG CTTCAGTTGG AGAGATGAGT TTGAAAGTTC CTATCTTTTT 42807 .......... .......... .......... .......... .......... .......... 32 TGGGTTTTAT CCAAATAGCT CAAGAAATCA TATATTCATC TCCATTGTGC TTACAAATGC 42867 .......... .......... .......... .......... .......... .......... 32 TAAAATTTCT AATTTTGTAA TGAAAGTGTT TCTAGGTTCT TGTTGTTATT GGTTTTTTTA 42927 .......... .......... .......... .......... .......... .......... 32 ACAGTATCAT TAGATAAAAT TTGGGTTTGG GCCAGATTTT TGAGAAAATC ACATGGTATG 42987 .......... .......... .......... .......... .......... .......... 32 CTCAATTATG TTTTGGAATG CTCAAATTCC AATTTTGTGA TGTACTGTTT TTCATATTTT 43047 .......... .......... .......... .......... .......... .......... 32 TTTTTGTTAT TATGTGTGGA TTTGTTGCAG TAAAATGATG CATTTGAAGT TCGTAGCTAA 43107 .......... .......... .......... .......... .......... .......... 32 ATTATGCTTT GTAAAGCTCA GAATTCCATC TGTAAAATAT GATCTTTTCG GGTCTTCGTG 43167 .......... .......... .......... .......... .......... .......... 32 TTATGGGATT TTGAGTTGTG TGCATATTAT GGGATTTCAA ATTGTAATAT ATGCACTTTC 43227 .......... .......... .......... .......... .......... .......... 32 CCTCATATTG TAGTGCTGCT TATCTGAGCA ATCATGGCTT CTGCGGCAAT GTTGAATGCA 43287 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...TGCTGCT TATCTGAGCA ATCATGGCTT CTGCGGCAAT GTTGAATGCA 79 CCTTGTAATA TTGGAGCTGT AAAGTTTGAG GTGAAACTGA AGCCATCGCC AAATTTGTTT 43347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGTAATA TTGGAGCTGT AAAGTTTGAG GTGAAACTGA AGCCATCGCC AAATTTGTTT 139 TGTGCACGGC CTTCTGTTAA GTTGAATCAA AGGAGGGTGT TAACCATTAG AGCTAGCAAG 43407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCACGGC CTTCTGTTAA GTTGAATCAA AGGAGGGTGT TAACCATTAG AGCTAGCAAG 199 GAAGGGCATG ATAATGGGTC TAGCTCAGGG CCCTTGAGAA AGATGGGGTT GACTGATGAG 43467 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| GAAGGGCATG ATAATGGGTC TAGCTCCAGG CCCTTGAGAA AGATGGGGTT GACTGATGAG 259 GAGTGTGAGG CTGCTGTAGT TGCC 43491 |||||||||| |||||||| | |||| GAGTGTGAGG CTGCTGTAAT TGCC 283 hqPGS_C08HBa0037O11.1+_SGN-E327418+ (42448 42479,43241 43491) ******************************************************************************** EST sequence 20 +strand 768 n (File: SGN-E327022+) 1 ATGGCTTCTG CGGCAATGTT GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG 61 AAACTGAAGC CATCGCCAAA TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG 121 AGGGTGTTAA CCATTAGAGC TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC 181 TTGAGAAAGA TGGGGTTGAC TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA 241 CCTGAAGCTC CTCCGGTTCC ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT 301 TCACTGCCAA TTAATAGGAG ACCACGCCGT AATCGTAGGT CGTCAGCAGC AAGAGCTGCA 361 TTCCAGGAAA CAAATATAAG CCCTGCAAAT CTTGTATATC CACTATTTAT TCATGAGGGT 421 GAAGAGGACA CACCTATTGG AGCAATGCCT GGATGTTATA GGCTTGGATG GAGGCATGGT 481 CTTGTTGAAG AGGTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 541 AAAGTTCCAG ATGCTTTTAA GACCTCTACA GGAGATGAAG CTTACNATGA CAATGGATTA 601 GTGCCCCGAA CAATACGTTT GCTGAAAGAA CAATACCCTG ATCTTGNTAT CTACACTGAT 661 GTTGCTTTGG ATCCATATTC ATCTGATGGG CATGATGGCA TTGTGAGAAG AGATGGAGTT 721 ATCATGAATG ACGAGACTGT GCATCAGTTT GTGCAACAGG CAGTTGCT Predicted gene structure (within gDNA segment 42661 to 50136): Exon 1 43261 43566 ( 306 n); cDNA 1 306 ( 306 n); score: 1.000 Intron 1 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 44683 44794 ( 112 n); cDNA 307 418 ( 112 n); score: 1.000 Intron 2 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 44867 44940 ( 74 n); cDNA 419 492 ( 74 n); score: 1.000 Intron 3 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 47056 47124 ( 69 n); cDNA 493 561 ( 69 n); score: 0.986 Intron 4 47125 47206 ( 82 n); Pd: 0.974 (s: 0.98), Pa: 0.992 (s: 0.98) Exon 5 47207 47290 ( 84 n); cDNA 562 645 ( 84 n); score: 0.964 Intron 5 47291 47390 ( 100 n); Pd: 0.910 (s: 0.96), Pa: 0.954 (s: 0.98) Exon 6 47391 47460 ( 70 n); cDNA 646 715 ( 70 n); score: 0.957 Intron 6 47461 49302 (1842 n); Pd: 0.957 (s: 0.96), Pa: 0.984 (s: 0.93) Exon 7 49303 49355 ( 53 n); cDNA 716 768 ( 53 n); score: 0.934 MATCH C08HBa0037O11.1+ SGN-E327022+ 0.986 768 1.000 C PGS_C08HBa0037O11.1+_SGN-E327022+ (43261 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49355) Alignment (genomic DNA sequence = upper lines): ATGGCTTCTG CGGCAATGTT GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG 43320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTTCTG CGGCAATGTT GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG 60 AAACTGAAGC CATCGCCAAA TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG 43380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTGAAGC CATCGCCAAA TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG 120 AGGGTGTTAA CCATTAGAGC TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC 43440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGTTAA CCATTAGAGC TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC 180 TTGAGAAAGA TGGGGTTGAC TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA 43500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGAAAGA TGGGGTTGAC TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA 240 CCTGAAGCTC CTCCGGTTCC ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT 43560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGAAGCTC CTCCGGTTCC ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT 300 TCACTGGTTA GTTTTCAGAC ATCATTATTT TTAATTATGC CAATTTTGCC ATTTTAGAGA 43620 |||||| TCACTG.... .......... .......... .......... .......... .......... 306 TGGCGAGGAA GTGTTAAGTG GACCACCTTT TTCATTAGTT TTGGAGGACT GTTTTGATTG 43680 .......... .......... .......... .......... .......... .......... 306 CTTATTGGCT TTGGTTTTGG TGGCATATTC TCTAATCTGC TAAACGTTAT TTTCTAATCT 43740 .......... .......... .......... .......... .......... .......... 306 CCGTATCAAA TTGTTACAGG AATTAGATGT TTCATGAGTC CAGAGTGTTT GATTTGTTTG 43800 .......... .......... .......... .......... .......... .......... 306 TAATTGAACT AGCCAGATGT AAGTTGGATA CTATGGTGTA TTTTACATGT AATATACATT 43860 .......... .......... .......... .......... .......... .......... 306 GTTTCTGAAT TACAAGTAAC TTACCAACTG TCAAAATAGC AGAAGCAGTG GAGAACAAAT 43920 .......... .......... .......... .......... .......... .......... 306 TGCTCTGACA ACTTAGTCAT AATTGAGTAC AGGCATCTCC ATAAATGATA ACTAACTTAG 43980 .......... .......... .......... .......... .......... .......... 306 GATATTAAAA ATGGATTCAT CTACTGAATT GAGGCAAAAA TTTCATAAAA TGCTAGTACT 44040 .......... .......... .......... .......... .......... .......... 306 GTATTGGAAG ACTGCTTAAC TATTGTTGAT GGGTGTTATT ACATTTGAAT TCAAGATTCT 44100 .......... .......... .......... .......... .......... .......... 306 TTCAAACATT TATCCAGAGT TCTAGTTACA GAAAGGCGAA AGCCTTATAA AGGAAAGTGA 44160 .......... .......... .......... .......... .......... .......... 306 TCATACTTTG AGAAAATTAC ACCGGACTAT AAAATCTTGA AATTGACAGA TAAGGTCTAA 44220 .......... .......... .......... .......... .......... .......... 306 CGACAACTTC TTTGAACATC TTTGACTATT CTTATCTGGA TGGAGGATGC TGAATGTTGA 44280 .......... .......... .......... .......... .......... .......... 306 TGCGATACTT GCAAATTACA TGATATTTAC TTGTAGTGTA TTTCTGGTAT TTTTAGAACA 44340 .......... .......... .......... .......... .......... .......... 306 TTGAGGGTCC TTATTCCATT TACACAAGAT GATCAGCGAT CTTTGTGAGA CATCCCTATG 44400 .......... .......... .......... .......... .......... .......... 306 ATTACTTGAC TCTGAAGTGG TGTAGTTAAT ATTTTATCCT TCAACTTCTA GAAAAAAATA 44460 .......... .......... .......... .......... .......... .......... 306 TCCTTCAACT TCTACTCTTC TTGTAGGTTG TCAGTGGGTA CTACATTTAT AATTTTGTAA 44520 .......... .......... .......... .......... .......... .......... 306 GTAATAGTGT TAACTTGTTT AGTTTGTATA ACTGATAGCA TCTTGGTTGA ATTGTTGGAT 44580 .......... .......... .......... .......... .......... .......... 306 GGTATGGTGA TAATGCTTTA ATATAGACTC AACACTGCAT CAGAAGTTGA TAGATTGATT 44640 .......... .......... .......... .......... .......... .......... 306 TGCTATGTGC CTGTAGCTAA TGACTGGATG TTGCTTGTAT AGCCAATTAA TAGGAGACCA 44700 |||||||| |||||||||| .......... .......... .......... .......... ..CCAATTAA TAGGAGACCA 324 CGCCGTAATC GTAGGTCGTC AGCAGCAAGA GCTGCATTCC AGGAAACAAA TATAAGCCCT 44760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGTAATC GTAGGTCGTC AGCAGCAAGA GCTGCATTCC AGGAAACAAA TATAAGCCCT 384 GCAAATCTTG TATATCCACT ATTTATTCAT GAGGGTGAGT ACTTGTCTGA ATTCCTCTCT 44820 |||||||||| |||||||||| |||||||||| |||| GCAAATCTTG TATATCCACT ATTTATTCAT GAGG...... .......... .......... 418 GCTTATAACA TGTATCAATC TGTTCTTACG AATCACACAC TTGCAGGTGA AGAGGACACA 44880 |||| |||||||||| .......... .......... .......... .......... ......GTGA AGAGGACACA 432 CCTATTGGAG CAATGCCTGG ATGTTATAGG CTTGGATGGA GGCATGGTCT TGTTGAAGAG 44940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTGGAG CAATGCCTGG ATGTTATAGG CTTGGATGGA GGCATGGTCT TGTTGAAGAG 492 GTCGGTGAGC TATCCCTAGG ATTCTTTGTC CTCTATAATG TCTTTTTTTA GATCAGAATT 45000 .......... .......... .......... .......... .......... .......... 492 TCAGCATTTT GGTTCCTTAA TTCAATTCTT CTTTGTCTAA TTGATCTTGT CATATAATCC 45060 .......... .......... .......... .......... .......... .......... 492 TGCTCCCTGT TCTTCCAAAT TTTAGCTGGT GATAATGAAG TATCTGATGC ATTTGATCAC 45120 .......... .......... .......... .......... .......... .......... 492 ATAAATAGCG AGCAATGTTC TTTATCAAGT ATCTAATGTT TATGATAGGT GGAAGGTAGT 45180 .......... .......... .......... .......... .......... .......... 492 TTCGTTTAAG GCAGCCTGAC CACCGTAACT CTACTTTGGG CCATAAGTAG CTCTCTCCTT 45240 .......... .......... .......... .......... .......... .......... 492 GATTAATTTT GATATGTTGA CCTTGTAGCC CTGCTTTGTA TTGGTTCACA GTGTATCTAA 45300 .......... .......... .......... .......... .......... .......... 492 TTGATGATGA TGTGCTGCAT TGGTCTTGTT GCTATGATTT TGCTATATCT TGAGGGTGAT 45360 .......... .......... .......... .......... .......... .......... 492 TTGCTTTCCA TTGTCCATTT GTTTTCCATT ATGTATGTTA TTATGACCAG ACCAGTATCA 45420 .......... .......... .......... .......... .......... .......... 492 TTACAATATT GCTAGTATTA ATGATAAAAA CCATTATCAT TACATTATTG CTGGTATCAA 45480 .......... .......... .......... .......... .......... .......... 492 TGATCAAAGT TTTACCATAG CATTAGGGGT AAAGTGTCTT TCTTGTTTGG TGATCAGTCA 45540 .......... .......... .......... .......... .......... .......... 492 ACGAAGTCAT TCTGGATAAA CAAAACGCTA TCCTCGTAAT TTGTTGTAGG TTTTTATTTT 45600 .......... .......... .......... .......... .......... .......... 492 TCAATTTTCG ATGTTGTATT TATTGGAGAG GGGTAGAGGG GCAGAGGGGC AGGCCCATTA 45660 .......... .......... .......... .......... .......... .......... 492 TTCACTTTGT TTTAAACCAT GCTCCAAGGG CTAGGGGGAT TTCTCTGTTA CAAAAAAAAA 45720 .......... .......... .......... .......... .......... .......... 492 AGATTTCCTC TTTTTGGGTT GGGAAAATAC ATCACCGGAT TTTAGGCTAA ATAAAGACTA 45780 .......... .......... .......... .......... .......... .......... 492 TGATCATTTG TGGGTACCAG TCACACATGT CAGGATTATC AACGGACATG CCTGTCTAGA 45840 .......... .......... .......... .......... .......... .......... 492 TTCTGACTGC TCTTGTTTGG CAAAAATAAT TAAAATAACG CTGTCAAGAA CTCTGCTCTC 45900 .......... .......... .......... .......... .......... .......... 492 AGATTCCTCT GAGGCACTCG CGATGTGTAA TAAGAGAGGT GTGTGGTCTG GACATATTAT 45960 .......... .......... .......... .......... .......... .......... 492 TCAGTATTTT AAATATATTC AAGACTTCAA TTACAGATAC CAGAACAAAG TATAAATTTC 46020 .......... .......... .......... .......... .......... .......... 492 GAATTCAGGT CCAATATTCA TTGTAACTTT GTTAGGTTGG GTAGGATGAA AGACATTATT 46080 .......... .......... .......... .......... .......... .......... 492 TTTTCAAAAG AAAGAAAGAC CTGCAAAGAA TTCCTTTTCT TTTTTTTCAC CAAAACAGTA 46140 .......... .......... .......... .......... .......... .......... 492 TTTAATTATA ATCTTCCAGT GAATAAATCG ATCTTTTTTT CCCATCTCAA AAAAGACTGA 46200 .......... .......... .......... .......... .......... .......... 492 TTTATTCACT GGAAGATGAT AGTTAAATTC TGGTTTGGTA AAAAGGAAAT CTTTGCAGGT 46260 .......... .......... .......... .......... .......... .......... 492 CCTAGGTGCA GGTTTAACTT TTAAGTGTAG ATATCAGGAA AAAGGGAAGG ACAATAAACA 46320 .......... .......... .......... .......... .......... .......... 492 GAGAAAAAGA AAAAGAAAAA GAAATAGAAA TGCATACAAC AACTATTAAA ATTTACTACT 46380 .......... .......... .......... .......... .......... .......... 492 ACACCTCAAT CACAAGCAAA TTGGGGGATC AGACAAGCTA CCATGTATAC TCACGTATAT 46440 .......... .......... .......... .......... .......... .......... 492 ACTTATTTGC TAATGGGTTG AGAATGTATA GGATGCTCTT TTAATTGGAG GAAATTACCT 46500 .......... .......... .......... .......... .......... .......... 492 TGGAGGCTAA TAAGTACTTT GGCGATAATT GGTACTTTTA CAATTCTTTT GTCCATGTTA 46560 .......... .......... .......... .......... .......... .......... 492 TTGACAGCCT CATGTACAAT ATTCAAGGAA ACCTACATTT ACTTGAGTAG AAATCAAACA 46620 .......... .......... .......... .......... .......... .......... 492 AAGTACTTGT AAGCTAAAAT TAGTTGCTGT AAATCTGTTG TAGCAGAAGT GGAGTCTCCA 46680 .......... .......... .......... .......... .......... .......... 492 GTGGATGATA CATGGGTAGG CTATTATAGA TGGGTCTGTA TTGCACTCAA TTGCTCATCT 46740 .......... .......... .......... .......... .......... .......... 492 GCAGTTGCCG CCTCTGATTG AGAAGTAAAT ACCAAATGGA ACTTGAACAT TTCTAGAATT 46800 .......... .......... .......... .......... .......... .......... 492 TTACCAGCTT CCAGAATATG ATCATTCTTC ACACTTACTG TCATATGCTT TTAGAGGGCT 46860 .......... .......... .......... .......... .......... .......... 492 CATATAAGTC TTGTCGATGA TTTGGTTCCA AGCTTGCTGT CCGTGACACA TAATTTTCAG 46920 .......... .......... .......... .......... .......... .......... 492 TACTTAACAA AACAACAAAT TGGCTTGGTT AAAGATACAT CTAGATCATA TTTAAGGATT 46980 .......... .......... .......... .......... .......... .......... 492 CAACTGCGAT CATAGCACCT TTGTAATACT TCTGTGCATT CTTTTGAGCA AGTGGATTTA 47040 .......... .......... .......... .......... .......... .......... 492 CTTTTTCTTA TGCAGGTCGC AAAGGCAAGG GATGTTGGAG TCAACAGCAT TGTGCTCTTC 47100 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTCGC AAAGGCAAGG GATGTTGGAG TCAACAGCAT TGTGCTCTTC 537 CCAAAAGTTC CAGATGCTTT AAAGGTCCTC TTCTAGACTT CTACCAGCAT AAATTTCCAT 47160 |||||||||| |||||||||| ||| CCAAAAGTTC CAGATGCTTT TAAG...... .......... .......... .......... 561 GTACCATCTG ACTTCAGATT ATATAACTTG TTTCCTGCAA CTTCAGACCT CTACAGGAGA 47220 |||| |||||||||| .......... .......... .......... .......... ......ACCT CTACAGGAGA 575 TGAAGCTTAC AATGACAATG GATTAGTGCC CCGAACAATA CGTTTGCTGA AAGACAAATA 47280 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||| |||| TGAAGCTTAC NATGACAATG GATTAGTGCC CCGAACAATA CGTTTGCTGA AAGAACAATA 635 CCCTGATCTT GTATGTCGAT ACATATCATC TGGTTTCTTT TATCTGCTTA AACAACTTTT 47340 |||||||||| CCCTGATCTT .......... .......... .......... .......... .......... 645 CTGTGGGAAA ATCCTGGCGC TTCCTTTTAT GTTTGATGCG TTTTCAATAG GTTATCTACA 47400 | |||||||| .......... .......... .......... .......... .......... GNTATCTACA 655 CTGATGTTGC TTTGGATCCA TATTCATCTG ATGGGCATGA TGGCATTGTG AGAGAAGATG 47460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| CTGATGTTGC TTTGGATCCA TATTCATCTG ATGGGCATGA TGGCATTGTG AGAAGAGATG 715 GTAAGACATA ATTTTGTGTT CATACCAGCC TAATGAGAAA ACCTTTTATT GCCAAATTAC 47520 .......... .......... .......... .......... .......... .......... 715 ATAAAAATTA AGAAAAAACA GTTCTAATAG ATATAATACA CATGAACCCA TGGAATCCAT 47580 .......... .......... .......... .......... .......... .......... 715 TCTGTAAATT CTATCTCATA TAGCATATCC TATTATTGTA GCTTATGTTT ATTATCTCTG 47640 .......... .......... .......... .......... .......... .......... 715 TTAACTTTGA ATTGATGCTG ATGCAATGAG GTAAGTTCTC TTTCTTGGTT ATGGTGATAG 47700 .......... .......... .......... .......... .......... .......... 715 CTGTTAGTGT ACTTCAGTCT TTAGCTTCTT GAATTATTAT ATGAAGGAGT AAGTTGTCTT 47760 .......... .......... .......... .......... .......... .......... 715 GTTTACTGAA ATATTTGGAT GATGATCTTT TCTTTCATCA CTTCGGGTCA CCATAAAGCA 47820 .......... .......... .......... .......... .......... .......... 715 TAAACCGCCA GTAGCAAAAT TCCTCTTCAA CACAAAACCA TTCTTTTTTG TTGAAATCAT 47880 .......... .......... .......... .......... .......... .......... 715 TTCATCAAAC ATGAAAACTT CATACATCTT ACTTTTGTGA CTCCTATTTG TAAGGTAATA 47940 .......... .......... .......... .......... .......... .......... 715 ACTGATAGCT TTTGAAACTA TACTGATTCT TGATGACACT TTATCTCTAT CATGGATGCT 48000 .......... .......... .......... .......... .......... .......... 715 TCCCTGGATT GCAATCTGAA ATATAAATGC AAGTTATATT TATCAAAAGT AATTAAAGCT 48060 .......... .......... .......... .......... .......... .......... 715 GCATTTATCA TTGCAAATAA TTTTACAGAA AATATTTGCT GTGAAGATGA GGAGAAAATA 48120 .......... .......... .......... .......... .......... .......... 715 ACTTGTATTG GGCTTTTTAA GAGCTTATGA TAGATAAACC TTTTTCTTGT TTTCTCTTTC 48180 .......... .......... .......... .......... .......... .......... 715 TATGTATTAT TTTAAAAATA AAGATATGAA CAAAAAAGGC CTTTATTTGG AAAAATTGGG 48240 .......... .......... .......... .......... .......... .......... 715 AATGCTTTTA ATTCCTGTTG CAGTATAGTA ATCTTTGTTT AGCAGCTGTA GGATTCCTAA 48300 .......... .......... .......... .......... .......... .......... 715 AGCACCTTAT AGTTTTTTTT AATTTTTGGG TAATACCACT CTCAATTAGG AGTATCTATA 48360 .......... .......... .......... .......... .......... .......... 715 GTTCTGTTTG ATTTAGTTTT AACCTAAAAG GAAACCAACA AACTATGTTG GTTTGATAAA 48420 .......... .......... .......... .......... .......... .......... 715 TAAACAAACC AAACTAAATC AAATGTTTTT TTTTCAGTTT TTTTTCTTCG ATTTTTTAGT 48480 .......... .......... .......... .......... .......... .......... 715 CACGTGAAAC ACAAATTCAA TTCACAGCAA AAGGTAAAAT CTCTCAAATG TCAATACATG 48540 .......... .......... .......... .......... .......... .......... 715 TTTAGAAATA ATCAAGCAGA TAGATTAACT TATCATCTAT TGAAACATCC ACATATGGGA 48600 .......... .......... .......... .......... .......... .......... 715 AGTTCACCTT GAGACATGAT AATTATCCAC TTCCAAAACT AATAAAACAA ATATACATCC 48660 .......... .......... .......... .......... .......... .......... 715 ATCTATGCTG CCAAAATTAA TTAAACTTAA TGATTTAAAA ATAATATACA AATCACGCCT 48720 .......... .......... .......... .......... .......... .......... 715 AAATGACTTC AATATATGTG AATAGAAAAT TCAAGCAAGC ATCACGAACA TGTTAAGACA 48780 .......... .......... .......... .......... .......... .......... 715 AATTTAAAAT TTTTTTGTTA TTAAAACTAT ATAAAGTTCT AAAAGAATAT CTACCAGATA 48840 .......... .......... .......... .......... .......... .......... 715 TTTATGTCTG TAGAATTATA CAAAATCCAA TTGATACAAG TCAATGAACA AGTTTTTTCA 48900 .......... .......... .......... .......... .......... .......... 715 GTCAGTTTGG TTTGGTTTTT TAGTAACACC TAACTCTCTT GGAAGTTCTA ATACTGCAGT 48960 .......... .......... .......... .......... .......... .......... 715 TTGTATGTGT TTGAGAAAGG CTTCCAACAG TTGATACCTT TAGCATGGCC TTAGTTATGA 49020 .......... .......... .......... .......... .......... .......... 715 ATGTTTGTCA AAGTTTTGTT GGTGACATTT GTACTTGTTT CTCTGTTGTT AATTGTGTAT 49080 .......... .......... .......... .......... .......... .......... 715 CTCCTCTTTT GCATCAATGG TATTTTATTT TCCATAAAAG GATTAGAATT GGATGAATTT 49140 .......... .......... .......... .......... .......... .......... 715 CCTTGTTAAT AGAGCTTGAG CGAAGACAAA ATGTTTAAAG ACGAAGATAA CACAAAAATA 49200 .......... .......... .......... .......... .......... .......... 715 TTTGCCTTTA TGTGTTTAAT AAAAATGAAT GACCACAAAT GTACAGAGTT AATGGCTTTT 49260 .......... .......... .......... .......... .......... .......... 715 TGAATACTTA AGTTTGGTTT TGGTCTTCTG AAATGGCTGC AGGAGTTATC ATGAATGACG 49320 |||||||| |||||||||| .......... .......... .......... .......... ..GAGTTATC ATGAATGACG 733 AGACTGTGCA TCAG-TTGTG CAAACAGGCA GTTGCT 49355 |||||||||| |||| ||||| | |||||||| |||||| AGACTGTGCA TCAGTTTGTG C-AACAGGCA GTTGCT 768 hqPGS_C08HBa0037O11.1+_SGN-E327022+ (43261 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49355) ******************************************************************************** EST sequence 35 +strand 583 n (File: SGN-E328450+) 1 ATGGCTTCTG CGGCAATGTT GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG 61 AAACTGAAGC CATCGCCAAA TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG 121 AGGGTGTTAA CCATTAGAGC TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC 181 TTGAGAAAGA TGGGGTTGAC TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA 241 CCTGAAGCTC CTCCGGTTCC ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT 301 TCACTGCCAA TTAATAGGAG ACCACGCCGT AATCGTAGGT CGTCAGCAGC AAGAGCTGCA 361 TTCCAGGAAA CAAATATAAG CCCTGCAAAT CTTGTATATC CACTATTTAT TCATGAGGGT 421 GAAGAGGACA CACCTATTGG AGCAATGCCT GGATGTTATA GGCTTGGATG GAGGCATGGT 481 CTTGTTGAAG AGGTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 541 AAAGTTCCAG ATGCTTTAAA GACCTCTACA GGAGATGAAG CTT Predicted gene structure (within gDNA segment 42661 to 47954): Exon 1 43261 43566 ( 306 n); cDNA 1 306 ( 306 n); score: 1.000 Intron 1 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 44683 44794 ( 112 n); cDNA 307 418 ( 112 n); score: 1.000 Intron 2 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 44867 44940 ( 74 n); cDNA 419 492 ( 74 n); score: 1.000 Intron 3 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 47056 47124 ( 69 n); cDNA 493 561 ( 69 n); score: 1.000 Intron 4 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 0) Exon 5 47207 47228 ( 22 n); cDNA 562 583 ( 22 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E328450+ 1.000 583 1.000 C PGS_C08HBa0037O11.1+_SGN-E328450+ (43261 43566,44683 44794,44867 44940,47056 47124,47207 47228) Alignment (genomic DNA sequence = upper lines): ATGGCTTCTG CGGCAATGTT GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG 43320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTTCTG CGGCAATGTT GAATGCACCT TGTAATATTG GAGCTGTAAA GTTTGAGGTG 60 AAACTGAAGC CATCGCCAAA TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG 43380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTGAAGC CATCGCCAAA TTTGTTTTGT GCACGGCCTT CTGTTAAGTT GAATCAAAGG 120 AGGGTGTTAA CCATTAGAGC TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC 43440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGTTAA CCATTAGAGC TAGCAAGGAA GGGCATGATA ATGGGTCTAG CTCAGGGCCC 180 TTGAGAAAGA TGGGGTTGAC TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA 43500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGAAAGA TGGGGTTGAC TGATGAGGAG TGTGAGGCTG CTGTAGTTGC CGGAAATGTA 240 CCTGAAGCTC CTCCGGTTCC ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT 43560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGAAGCTC CTCCGGTTCC ACCAAAGCCG GCTGCACCTG ACGGTACCCC TATTGTGTCT 300 TCACTGGTTA GTTTTCAGAC ATCATTATTT TTAATTATGC CAATTTTGCC ATTTTAGAGA 43620 |||||| TCACTG.... .......... .......... .......... .......... .......... 306 TGGCGAGGAA GTGTTAAGTG GACCACCTTT TTCATTAGTT TTGGAGGACT GTTTTGATTG 43680 .......... .......... .......... .......... .......... .......... 306 CTTATTGGCT TTGGTTTTGG TGGCATATTC TCTAATCTGC TAAACGTTAT TTTCTAATCT 43740 .......... .......... .......... .......... .......... .......... 306 CCGTATCAAA TTGTTACAGG AATTAGATGT TTCATGAGTC CAGAGTGTTT GATTTGTTTG 43800 .......... .......... .......... .......... .......... .......... 306 TAATTGAACT AGCCAGATGT AAGTTGGATA CTATGGTGTA TTTTACATGT AATATACATT 43860 .......... .......... .......... .......... .......... .......... 306 GTTTCTGAAT TACAAGTAAC TTACCAACTG TCAAAATAGC AGAAGCAGTG GAGAACAAAT 43920 .......... .......... .......... .......... .......... .......... 306 TGCTCTGACA ACTTAGTCAT AATTGAGTAC AGGCATCTCC ATAAATGATA ACTAACTTAG 43980 .......... .......... .......... .......... .......... .......... 306 GATATTAAAA ATGGATTCAT CTACTGAATT GAGGCAAAAA TTTCATAAAA TGCTAGTACT 44040 .......... .......... .......... .......... .......... .......... 306 GTATTGGAAG ACTGCTTAAC TATTGTTGAT GGGTGTTATT ACATTTGAAT TCAAGATTCT 44100 .......... .......... .......... .......... .......... .......... 306 TTCAAACATT TATCCAGAGT TCTAGTTACA GAAAGGCGAA AGCCTTATAA AGGAAAGTGA 44160 .......... .......... .......... .......... .......... .......... 306 TCATACTTTG AGAAAATTAC ACCGGACTAT AAAATCTTGA AATTGACAGA TAAGGTCTAA 44220 .......... .......... .......... .......... .......... .......... 306 CGACAACTTC TTTGAACATC TTTGACTATT CTTATCTGGA TGGAGGATGC TGAATGTTGA 44280 .......... .......... .......... .......... .......... .......... 306 TGCGATACTT GCAAATTACA TGATATTTAC TTGTAGTGTA TTTCTGGTAT TTTTAGAACA 44340 .......... .......... .......... .......... .......... .......... 306 TTGAGGGTCC TTATTCCATT TACACAAGAT GATCAGCGAT CTTTGTGAGA CATCCCTATG 44400 .......... .......... .......... .......... .......... .......... 306 ATTACTTGAC TCTGAAGTGG TGTAGTTAAT ATTTTATCCT TCAACTTCTA GAAAAAAATA 44460 .......... .......... .......... .......... .......... .......... 306 TCCTTCAACT TCTACTCTTC TTGTAGGTTG TCAGTGGGTA CTACATTTAT AATTTTGTAA 44520 .......... .......... .......... .......... .......... .......... 306 GTAATAGTGT TAACTTGTTT AGTTTGTATA ACTGATAGCA TCTTGGTTGA ATTGTTGGAT 44580 .......... .......... .......... .......... .......... .......... 306 GGTATGGTGA TAATGCTTTA ATATAGACTC AACACTGCAT CAGAAGTTGA TAGATTGATT 44640 .......... .......... .......... .......... .......... .......... 306 TGCTATGTGC CTGTAGCTAA TGACTGGATG TTGCTTGTAT AGCCAATTAA TAGGAGACCA 44700 |||||||| |||||||||| .......... .......... .......... .......... ..CCAATTAA TAGGAGACCA 324 CGCCGTAATC GTAGGTCGTC AGCAGCAAGA GCTGCATTCC AGGAAACAAA TATAAGCCCT 44760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCGTAATC GTAGGTCGTC AGCAGCAAGA GCTGCATTCC AGGAAACAAA TATAAGCCCT 384 GCAAATCTTG TATATCCACT ATTTATTCAT GAGGGTGAGT ACTTGTCTGA ATTCCTCTCT 44820 |||||||||| |||||||||| |||||||||| |||| GCAAATCTTG TATATCCACT ATTTATTCAT GAGG...... .......... .......... 418 GCTTATAACA TGTATCAATC TGTTCTTACG AATCACACAC TTGCAGGTGA AGAGGACACA 44880 |||| |||||||||| .......... .......... .......... .......... ......GTGA AGAGGACACA 432 CCTATTGGAG CAATGCCTGG ATGTTATAGG CTTGGATGGA GGCATGGTCT TGTTGAAGAG 44940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTGGAG CAATGCCTGG ATGTTATAGG CTTGGATGGA GGCATGGTCT TGTTGAAGAG 492 GTCGGTGAGC TATCCCTAGG ATTCTTTGTC CTCTATAATG TCTTTTTTTA GATCAGAATT 45000 .......... .......... .......... .......... .......... .......... 492 TCAGCATTTT GGTTCCTTAA TTCAATTCTT CTTTGTCTAA TTGATCTTGT CATATAATCC 45060 .......... .......... .......... .......... .......... .......... 492 TGCTCCCTGT TCTTCCAAAT TTTAGCTGGT GATAATGAAG TATCTGATGC ATTTGATCAC 45120 .......... .......... .......... .......... .......... .......... 492 ATAAATAGCG AGCAATGTTC TTTATCAAGT ATCTAATGTT TATGATAGGT GGAAGGTAGT 45180 .......... .......... .......... .......... .......... .......... 492 TTCGTTTAAG GCAGCCTGAC CACCGTAACT CTACTTTGGG CCATAAGTAG CTCTCTCCTT 45240 .......... .......... .......... .......... .......... .......... 492 GATTAATTTT GATATGTTGA CCTTGTAGCC CTGCTTTGTA TTGGTTCACA GTGTATCTAA 45300 .......... .......... .......... .......... .......... .......... 492 TTGATGATGA TGTGCTGCAT TGGTCTTGTT GCTATGATTT TGCTATATCT TGAGGGTGAT 45360 .......... .......... .......... .......... .......... .......... 492 TTGCTTTCCA TTGTCCATTT GTTTTCCATT ATGTATGTTA TTATGACCAG ACCAGTATCA 45420 .......... .......... .......... .......... .......... .......... 492 TTACAATATT GCTAGTATTA ATGATAAAAA CCATTATCAT TACATTATTG CTGGTATCAA 45480 .......... .......... .......... .......... .......... .......... 492 TGATCAAAGT TTTACCATAG CATTAGGGGT AAAGTGTCTT TCTTGTTTGG TGATCAGTCA 45540 .......... .......... .......... .......... .......... .......... 492 ACGAAGTCAT TCTGGATAAA CAAAACGCTA TCCTCGTAAT TTGTTGTAGG TTTTTATTTT 45600 .......... .......... .......... .......... .......... .......... 492 TCAATTTTCG ATGTTGTATT TATTGGAGAG GGGTAGAGGG GCAGAGGGGC AGGCCCATTA 45660 .......... .......... .......... .......... .......... .......... 492 TTCACTTTGT TTTAAACCAT GCTCCAAGGG CTAGGGGGAT TTCTCTGTTA CAAAAAAAAA 45720 .......... .......... .......... .......... .......... .......... 492 AGATTTCCTC TTTTTGGGTT GGGAAAATAC ATCACCGGAT TTTAGGCTAA ATAAAGACTA 45780 .......... .......... .......... .......... .......... .......... 492 TGATCATTTG TGGGTACCAG TCACACATGT CAGGATTATC AACGGACATG CCTGTCTAGA 45840 .......... .......... .......... .......... .......... .......... 492 TTCTGACTGC TCTTGTTTGG CAAAAATAAT TAAAATAACG CTGTCAAGAA CTCTGCTCTC 45900 .......... .......... .......... .......... .......... .......... 492 AGATTCCTCT GAGGCACTCG CGATGTGTAA TAAGAGAGGT GTGTGGTCTG GACATATTAT 45960 .......... .......... .......... .......... .......... .......... 492 TCAGTATTTT AAATATATTC AAGACTTCAA TTACAGATAC CAGAACAAAG TATAAATTTC 46020 .......... .......... .......... .......... .......... .......... 492 GAATTCAGGT CCAATATTCA TTGTAACTTT GTTAGGTTGG GTAGGATGAA AGACATTATT 46080 .......... .......... .......... .......... .......... .......... 492 TTTTCAAAAG AAAGAAAGAC CTGCAAAGAA TTCCTTTTCT TTTTTTTCAC CAAAACAGTA 46140 .......... .......... .......... .......... .......... .......... 492 TTTAATTATA ATCTTCCAGT GAATAAATCG ATCTTTTTTT CCCATCTCAA AAAAGACTGA 46200 .......... .......... .......... .......... .......... .......... 492 TTTATTCACT GGAAGATGAT AGTTAAATTC TGGTTTGGTA AAAAGGAAAT CTTTGCAGGT 46260 .......... .......... .......... .......... .......... .......... 492 CCTAGGTGCA GGTTTAACTT TTAAGTGTAG ATATCAGGAA AAAGGGAAGG ACAATAAACA 46320 .......... .......... .......... .......... .......... .......... 492 GAGAAAAAGA AAAAGAAAAA GAAATAGAAA TGCATACAAC AACTATTAAA ATTTACTACT 46380 .......... .......... .......... .......... .......... .......... 492 ACACCTCAAT CACAAGCAAA TTGGGGGATC AGACAAGCTA CCATGTATAC TCACGTATAT 46440 .......... .......... .......... .......... .......... .......... 492 ACTTATTTGC TAATGGGTTG AGAATGTATA GGATGCTCTT TTAATTGGAG GAAATTACCT 46500 .......... .......... .......... .......... .......... .......... 492 TGGAGGCTAA TAAGTACTTT GGCGATAATT GGTACTTTTA CAATTCTTTT GTCCATGTTA 46560 .......... .......... .......... .......... .......... .......... 492 TTGACAGCCT CATGTACAAT ATTCAAGGAA ACCTACATTT ACTTGAGTAG AAATCAAACA 46620 .......... .......... .......... .......... .......... .......... 492 AAGTACTTGT AAGCTAAAAT TAGTTGCTGT AAATCTGTTG TAGCAGAAGT GGAGTCTCCA 46680 .......... .......... .......... .......... .......... .......... 492 GTGGATGATA CATGGGTAGG CTATTATAGA TGGGTCTGTA TTGCACTCAA TTGCTCATCT 46740 .......... .......... .......... .......... .......... .......... 492 GCAGTTGCCG CCTCTGATTG AGAAGTAAAT ACCAAATGGA ACTTGAACAT TTCTAGAATT 46800 .......... .......... .......... .......... .......... .......... 492 TTACCAGCTT CCAGAATATG ATCATTCTTC ACACTTACTG TCATATGCTT TTAGAGGGCT 46860 .......... .......... .......... .......... .......... .......... 492 CATATAAGTC TTGTCGATGA TTTGGTTCCA AGCTTGCTGT CCGTGACACA TAATTTTCAG 46920 .......... .......... .......... .......... .......... .......... 492 TACTTAACAA AACAACAAAT TGGCTTGGTT AAAGATACAT CTAGATCATA TTTAAGGATT 46980 .......... .......... .......... .......... .......... .......... 492 CAACTGCGAT CATAGCACCT TTGTAATACT TCTGTGCATT CTTTTGAGCA AGTGGATTTA 47040 .......... .......... .......... .......... .......... .......... 492 CTTTTTCTTA TGCAGGTCGC AAAGGCAAGG GATGTTGGAG TCAACAGCAT TGTGCTCTTC 47100 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTCGC AAAGGCAAGG GATGTTGGAG TCAACAGCAT TGTGCTCTTC 537 CCAAAAGTTC CAGATGCTTT AAAGGTCCTC TTCTAGACTT CTACCAGCAT AAATTTCCAT 47160 |||||||||| |||||||||| |||| CCAAAAGTTC CAGATGCTTT AAAG...... .......... .......... .......... 561 GTACCATCTG ACTTCAGATT ATATAACTTG TTTCCTGCAA CTTCAGACCT CTACAGGAGA 47220 |||| |||||||||| .......... .......... .......... .......... ......ACCT CTACAGGAGA 575 TGAAGCTT 47228 |||||||| TGAAGCTT 583 hqPGS_C08HBa0037O11.1+_SGN-E328450+ (43261 43566,44683 44794,44867 44940,47056 47124,47207 47228) ******************************************************************************** EST sequence 39 +strand 699 n (File: SGN-E342358+) 1 TTCTGCGGCA ATGTTGAATG CACCTTGTAA TATTGGAGCT GTAAAGTTTG AGGTGAAACT 61 GAAGCCATCG CCAAATTTGT TTTGTGCACG GCCTTCTGTT AAGTTGAATC AAAGGAGGGT 121 GTTAACCATT AGAGCTAGCA AGGAAGGGCA TGATAATGGG TCTAGCTCAG GGCCCTTGAG 181 AAAGATGGGG TTGACTGATG AGGAGTGTGA GGCTGCTGTA GTTGCCGGAA ATGTACCTGA 241 AGCTCCTCCG GTTCCACCAA AGCCGGCTGC ACCTGACGGT ACCCCTATTG TGTCTTCACT 301 GCCAATTAAT AGGAGACCAC GCCGTAATCG TAGGTCGTCA GCAGCAAGAG CTGCATTCCA 361 GGAAACAAAT ATAAGCCCTG CAAATCTTGT ATATCCACTA TTTATTCATG AGGGTGAAGA 421 GGACACACCT ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT 481 TGAAGAGGTC GCAAAGGCAA GGGATGTTGG AGTAACGNCA TTGTGCTCTT CCCAAAAGTT 541 CCAGATGCTT TAAAGACCTC TACAGGAGAT GAAGCTTACA ATGACAATGG ATTAGTGCCC 601 CGAACAATAC GTTTGCTGAA AGACNATACC CTGATCTTGT TATCTACACT GATGTTGCTT 661 TGGATCCATA TTCATCTGAT GGGCATGATG GCATTGTGA Predicted gene structure (within gDNA segment 42666 to 48061): Exon 1 43266 43566 ( 301 n); cDNA 1 301 ( 301 n); score: 1.000 Intron 1 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 44683 44794 ( 112 n); cDNA 302 413 ( 112 n); score: 1.000 Intron 2 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 44867 44940 ( 74 n); cDNA 414 487 ( 74 n); score: 1.000 Intron 3 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 0.94) Exon 4 47056 47124 ( 69 n); cDNA 488 555 ( 68 n); score: 0.957 Intron 4 47125 47206 ( 82 n); Pd: 0.974 (s: 0.94), Pa: 0.992 (s: 1.00) Exon 5 47207 47290 ( 84 n); cDNA 556 638 ( 83 n); score: 0.976 Intron 5 47291 47390 ( 100 n); Pd: 0.910 (s: 0.96), Pa: 0.954 (s: 1.00) Exon 6 47391 47451 ( 61 n); cDNA 639 699 ( 61 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E342358+ 0.993 701 1.003 C PGS_C08HBa0037O11.1+_SGN-E342358+ (43266 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47451) Alignment (genomic DNA sequence = upper lines): TTCTGCGGCA ATGTTGAATG CACCTTGTAA TATTGGAGCT GTAAAGTTTG AGGTGAAACT 43325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGCGGCA ATGTTGAATG CACCTTGTAA TATTGGAGCT GTAAAGTTTG AGGTGAAACT 60 GAAGCCATCG CCAAATTTGT TTTGTGCACG GCCTTCTGTT AAGTTGAATC AAAGGAGGGT 43385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCCATCG CCAAATTTGT TTTGTGCACG GCCTTCTGTT AAGTTGAATC AAAGGAGGGT 120 GTTAACCATT AGAGCTAGCA AGGAAGGGCA TGATAATGGG TCTAGCTCAG GGCCCTTGAG 43445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAACCATT AGAGCTAGCA AGGAAGGGCA TGATAATGGG TCTAGCTCAG GGCCCTTGAG 180 AAAGATGGGG TTGACTGATG AGGAGTGTGA GGCTGCTGTA GTTGCCGGAA ATGTACCTGA 43505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGATGGGG TTGACTGATG AGGAGTGTGA GGCTGCTGTA GTTGCCGGAA ATGTACCTGA 240 AGCTCCTCCG GTTCCACCAA AGCCGGCTGC ACCTGACGGT ACCCCTATTG TGTCTTCACT 43565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCTCCG GTTCCACCAA AGCCGGCTGC ACCTGACGGT ACCCCTATTG TGTCTTCACT 300 GGTTAGTTTT CAGACATCAT TATTTTTAAT TATGCCAATT TTGCCATTTT AGAGATGGCG 43625 | G......... .......... .......... .......... .......... .......... 301 AGGAAGTGTT AAGTGGACCA CCTTTTTCAT TAGTTTTGGA GGACTGTTTT GATTGCTTAT 43685 .......... .......... .......... .......... .......... .......... 301 TGGCTTTGGT TTTGGTGGCA TATTCTCTAA TCTGCTAAAC GTTATTTTCT AATCTCCGTA 43745 .......... .......... .......... .......... .......... .......... 301 TCAAATTGTT ACAGGAATTA GATGTTTCAT GAGTCCAGAG TGTTTGATTT GTTTGTAATT 43805 .......... .......... .......... .......... .......... .......... 301 GAACTAGCCA GATGTAAGTT GGATACTATG GTGTATTTTA CATGTAATAT ACATTGTTTC 43865 .......... .......... .......... .......... .......... .......... 301 TGAATTACAA GTAACTTACC AACTGTCAAA ATAGCAGAAG CAGTGGAGAA CAAATTGCTC 43925 .......... .......... .......... .......... .......... .......... 301 TGACAACTTA GTCATAATTG AGTACAGGCA TCTCCATAAA TGATAACTAA CTTAGGATAT 43985 .......... .......... .......... .......... .......... .......... 301 TAAAAATGGA TTCATCTACT GAATTGAGGC AAAAATTTCA TAAAATGCTA GTACTGTATT 44045 .......... .......... .......... .......... .......... .......... 301 GGAAGACTGC TTAACTATTG TTGATGGGTG TTATTACATT TGAATTCAAG ATTCTTTCAA 44105 .......... .......... .......... .......... .......... .......... 301 ACATTTATCC AGAGTTCTAG TTACAGAAAG GCGAAAGCCT TATAAAGGAA AGTGATCATA 44165 .......... .......... .......... .......... .......... .......... 301 CTTTGAGAAA ATTACACCGG ACTATAAAAT CTTGAAATTG ACAGATAAGG TCTAACGACA 44225 .......... .......... .......... .......... .......... .......... 301 ACTTCTTTGA ACATCTTTGA CTATTCTTAT CTGGATGGAG GATGCTGAAT GTTGATGCGA 44285 .......... .......... .......... .......... .......... .......... 301 TACTTGCAAA TTACATGATA TTTACTTGTA GTGTATTTCT GGTATTTTTA GAACATTGAG 44345 .......... .......... .......... .......... .......... .......... 301 GGTCCTTATT CCATTTACAC AAGATGATCA GCGATCTTTG TGAGACATCC CTATGATTAC 44405 .......... .......... .......... .......... .......... .......... 301 TTGACTCTGA AGTGGTGTAG TTAATATTTT ATCCTTCAAC TTCTAGAAAA AAATATCCTT 44465 .......... .......... .......... .......... .......... .......... 301 CAACTTCTAC TCTTCTTGTA GGTTGTCAGT GGGTACTACA TTTATAATTT TGTAAGTAAT 44525 .......... .......... .......... .......... .......... .......... 301 AGTGTTAACT TGTTTAGTTT GTATAACTGA TAGCATCTTG GTTGAATTGT TGGATGGTAT 44585 .......... .......... .......... .......... .......... .......... 301 GGTGATAATG CTTTAATATA GACTCAACAC TGCATCAGAA GTTGATAGAT TGATTTGCTA 44645 .......... .......... .......... .......... .......... .......... 301 TGTGCCTGTA GCTAATGACT GGATGTTGCT TGTATAGCCA ATTAATAGGA GACCACGCCG 44705 ||| |||||||||| |||||||||| .......... .......... .......... .......CCA ATTAATAGGA GACCACGCCG 324 TAATCGTAGG TCGTCAGCAG CAAGAGCTGC ATTCCAGGAA ACAAATATAA GCCCTGCAAA 44765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCGTAGG TCGTCAGCAG CAAGAGCTGC ATTCCAGGAA ACAAATATAA GCCCTGCAAA 384 TCTTGTATAT CCACTATTTA TTCATGAGGG TGAGTACTTG TCTGAATTCC TCTCTGCTTA 44825 |||||||||| |||||||||| ||||||||| TCTTGTATAT CCACTATTTA TTCATGAGG. .......... .......... .......... 413 TAACATGTAT CAATCTGTTC TTACGAATCA CACACTTGCA GGTGAAGAGG ACACACCTAT 44885 ||||||||| |||||||||| .......... .......... .......... .......... .GTGAAGAGG ACACACCTAT 432 TGGAGCAATG CCTGGATGTT ATAGGCTTGG ATGGAGGCAT GGTCTTGTTG AAGAGGTCGG 44945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGGAGCAATG CCTGGATGTT ATAGGCTTGG ATGGAGGCAT GGTCTTGTTG AAGAG..... 487 TGAGCTATCC CTAGGATTCT TTGTCCTCTA TAATGTCTTT TTTTAGATCA GAATTTCAGC 45005 .......... .......... .......... .......... .......... .......... 487 ATTTTGGTTC CTTAATTCAA TTCTTCTTTG TCTAATTGAT CTTGTCATAT AATCCTGCTC 45065 .......... .......... .......... .......... .......... .......... 487 CCTGTTCTTC CAAATTTTAG CTGGTGATAA TGAAGTATCT GATGCATTTG ATCACATAAA 45125 .......... .......... .......... .......... .......... .......... 487 TAGCGAGCAA TGTTCTTTAT CAAGTATCTA ATGTTTATGA TAGGTGGAAG GTAGTTTCGT 45185 .......... .......... .......... .......... .......... .......... 487 TTAAGGCAGC CTGACCACCG TAACTCTACT TTGGGCCATA AGTAGCTCTC TCCTTGATTA 45245 .......... .......... .......... .......... .......... .......... 487 ATTTTGATAT GTTGACCTTG TAGCCCTGCT TTGTATTGGT TCACAGTGTA TCTAATTGAT 45305 .......... .......... .......... .......... .......... .......... 487 GATGATGTGC TGCATTGGTC TTGTTGCTAT GATTTTGCTA TATCTTGAGG GTGATTTGCT 45365 .......... .......... .......... .......... .......... .......... 487 TTCCATTGTC CATTTGTTTT CCATTATGTA TGTTATTATG ACCAGACCAG TATCATTACA 45425 .......... .......... .......... .......... .......... .......... 487 ATATTGCTAG TATTAATGAT AAAAACCATT ATCATTACAT TATTGCTGGT ATCAATGATC 45485 .......... .......... .......... .......... .......... .......... 487 AAAGTTTTAC CATAGCATTA GGGGTAAAGT GTCTTTCTTG TTTGGTGATC AGTCAACGAA 45545 .......... .......... .......... .......... .......... .......... 487 GTCATTCTGG ATAAACAAAA CGCTATCCTC GTAATTTGTT GTAGGTTTTT ATTTTTCAAT 45605 .......... .......... .......... .......... .......... .......... 487 TTTCGATGTT GTATTTATTG GAGAGGGGTA GAGGGGCAGA GGGGCAGGCC CATTATTCAC 45665 .......... .......... .......... .......... .......... .......... 487 TTTGTTTTAA ACCATGCTCC AAGGGCTAGG GGGATTTCTC TGTTACAAAA AAAAAAGATT 45725 .......... .......... .......... .......... .......... .......... 487 TCCTCTTTTT GGGTTGGGAA AATACATCAC CGGATTTTAG GCTAAATAAA GACTATGATC 45785 .......... .......... .......... .......... .......... .......... 487 ATTTGTGGGT ACCAGTCACA CATGTCAGGA TTATCAACGG ACATGCCTGT CTAGATTCTG 45845 .......... .......... .......... .......... .......... .......... 487 ACTGCTCTTG TTTGGCAAAA ATAATTAAAA TAACGCTGTC AAGAACTCTG CTCTCAGATT 45905 .......... .......... .......... .......... .......... .......... 487 CCTCTGAGGC ACTCGCGATG TGTAATAAGA GAGGTGTGTG GTCTGGACAT ATTATTCAGT 45965 .......... .......... .......... .......... .......... .......... 487 ATTTTAAATA TATTCAAGAC TTCAATTACA GATACCAGAA CAAAGTATAA ATTTCGAATT 46025 .......... .......... .......... .......... .......... .......... 487 CAGGTCCAAT ATTCATTGTA ACTTTGTTAG GTTGGGTAGG ATGAAAGACA TTATTTTTTC 46085 .......... .......... .......... .......... .......... .......... 487 AAAAGAAAGA AAGACCTGCA AAGAATTCCT TTTCTTTTTT TTCACCAAAA CAGTATTTAA 46145 .......... .......... .......... .......... .......... .......... 487 TTATAATCTT CCAGTGAATA AATCGATCTT TTTTTCCCAT CTCAAAAAAG ACTGATTTAT 46205 .......... .......... .......... .......... .......... .......... 487 TCACTGGAAG ATGATAGTTA AATTCTGGTT TGGTAAAAAG GAAATCTTTG CAGGTCCTAG 46265 .......... .......... .......... .......... .......... .......... 487 GTGCAGGTTT AACTTTTAAG TGTAGATATC AGGAAAAAGG GAAGGACAAT AAACAGAGAA 46325 .......... .......... .......... .......... .......... .......... 487 AAAGAAAAAG AAAAAGAAAT AGAAATGCAT ACAACAACTA TTAAAATTTA CTACTACACC 46385 .......... .......... .......... .......... .......... .......... 487 TCAATCACAA GCAAATTGGG GGATCAGACA AGCTACCATG TATACTCACG TATATACTTA 46445 .......... .......... .......... .......... .......... .......... 487 TTTGCTAATG GGTTGAGAAT GTATAGGATG CTCTTTTAAT TGGAGGAAAT TACCTTGGAG 46505 .......... .......... .......... .......... .......... .......... 487 GCTAATAAGT ACTTTGGCGA TAATTGGTAC TTTTACAATT CTTTTGTCCA TGTTATTGAC 46565 .......... .......... .......... .......... .......... .......... 487 AGCCTCATGT ACAATATTCA AGGAAACCTA CATTTACTTG AGTAGAAATC AAACAAAGTA 46625 .......... .......... .......... .......... .......... .......... 487 CTTGTAAGCT AAAATTAGTT GCTGTAAATC TGTTGTAGCA GAAGTGGAGT CTCCAGTGGA 46685 .......... .......... .......... .......... .......... .......... 487 TGATACATGG GTAGGCTATT ATAGATGGGT CTGTATTGCA CTCAATTGCT CATCTGCAGT 46745 .......... .......... .......... .......... .......... .......... 487 TGCCGCCTCT GATTGAGAAG TAAATACCAA ATGGAACTTG AACATTTCTA GAATTTTACC 46805 .......... .......... .......... .......... .......... .......... 487 AGCTTCCAGA ATATGATCAT TCTTCACACT TACTGTCATA TGCTTTTAGA GGGCTCATAT 46865 .......... .......... .......... .......... .......... .......... 487 AAGTCTTGTC GATGATTTGG TTCCAAGCTT GCTGTCCGTG ACACATAATT TTCAGTACTT 46925 .......... .......... .......... .......... .......... .......... 487 AACAAAACAA CAAATTGGCT TGGTTAAAGA TACATCTAGA TCATATTTAA GGATTCAACT 46985 .......... .......... .......... .......... .......... .......... 487 GCGATCATAG CACCTTTGTA ATACTTCTGT GCATTCTTTT GAGCAAGTGG ATTTACTTTT 47045 .......... .......... .......... .......... .......... .......... 487 TCTTATGCAG GTCGCAAAGG CAAGGGATGT TGGAGTCAAC AGCATTGTGC TCTTCCCAAA 47105 |||||||||| |||||||||| |||||| ||| |||||||| |||||||||| .......... GTCGCAAAGG CAAGGGATGT TGGAGT-AAC GNCATTGTGC TCTTCCCAAA 536 AGTTCCAGAT GCTTTAAAGG TCCTCTTCTA GACTTCTACC AGCATAAATT TCCATGTACC 47165 |||||||||| ||||||||| AGTTCCAGAT GCTTTAAAG. .......... .......... .......... .......... 555 ATCTGACTTC AGATTATATA ACTTGTTTCC TGCAACTTCA GACCTCTACA GGAGATGAAG 47225 ||||||||| |||||||||| .......... .......... .......... .......... .ACCTCTACA GGAGATGAAG 574 CTTACAATGA CAATGGATTA GTGCCCCGAA CAATACGTTT GCTGAAAGAC AAATACCCTG 47285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTTACAATGA CAATGGATTA GTGCCCCGAA CAATACGTTT GCTGAAAGAC -NATACCCTG 633 ATCTTGTATG TCGATACATA TCATCTGGTT TCTTTTATCT GCTTAAACAA CTTTTCTGTG 47345 ||||| ATCTT..... .......... .......... .......... .......... .......... 638 GGAAAATCCT GGCGCTTCCT TTTATGTTTG ATGCGTTTTC AATAGGTTAT CTACACTGAT 47405 ||||| |||||||||| .......... .......... .......... .......... .....GTTAT CTACACTGAT 653 GTTGCTTTGG ATCCATATTC ATCTGATGGG CATGATGGCA TTGTGA 47451 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GTTGCTTTGG ATCCATATTC ATCTGATGGG CATGATGGCA TTGTGA 699 hqPGS_C08HBa0037O11.1+_SGN-E342358+ (43266 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47451) ******************************************************************************** EST sequence 10 +strand 573 n (File: SGN-E211391+) 1 GATGGGGTTG ACTGATGAGG AGTGTGAGGC TGCTGTAGTT GCCGGAAATG TACCTGAAGC 61 TCCTCCGGTT CCACCAAAGC CGGCTGCACC TGACGGTACC CCTATTGTGT CTTCACTGCC 121 AATTAATAGG AGACCACGCC GTAATCGTAG GTCGTCAGCA GCAAGAGCTG CATTCCAGGA 181 AACAAATATA AGCCCTGCAA ATCTTGTATA TCCACTATTT ATTCATGAGG GTGAAGAGGA 241 CACACCTATT GGAGCAATGC CTGGATGTTA TAGGCTTGGA TGGAGGCATG GTCTTGTTGA 301 AGAGGTCGCA AAGGCAAGGG ATGTTGGAGT CAACAGCATT GTGCTCTTCC CAAAAGTTCC 361 AGATGCTTTA AAGACCTCTA CAGGAGATGA AGCTTACAAT GACAATGGAT TAGTGCCCCG 421 AACAATACGT TTGCTGAAAG ACAAATACCC TGATCTTGTT ATCTACACTG ATGTTGCTTT 481 GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATGGAG TTATCATGAA 541 TGACGAGACT GTGCATCAGT TGTGCAAACA GGC Predicted gene structure (within gDNA segment 42849 to 49958): Exon 1 43449 43566 ( 118 n); cDNA 1 118 ( 118 n); score: 1.000 Intron 1 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 44683 44794 ( 112 n); cDNA 119 230 ( 112 n); score: 1.000 Intron 2 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 44867 44940 ( 74 n); cDNA 231 304 ( 74 n); score: 1.000 Intron 3 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 47056 47124 ( 69 n); cDNA 305 373 ( 69 n); score: 1.000 Intron 4 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 47207 47290 ( 84 n); cDNA 374 457 ( 84 n); score: 1.000 Intron 5 47291 47390 ( 100 n); Pd: 0.910 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 6 47391 47460 ( 70 n); cDNA 458 527 ( 70 n); score: 1.000 Intron 6 47461 49302 (1842 n); Pd: 0.957 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 49303 49346 ( 44 n); cDNA 528 571 ( 44 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E211391+ 1.000 571 0.997 C PGS_C08HBa0037O11.1+_SGN-E211391+ (43449 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49346) Alignment (genomic DNA sequence = upper lines): GATGGGGTTG ACTGATGAGG AGTGTGAGGC TGCTGTAGTT GCCGGAAATG TACCTGAAGC 43508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGGGTTG ACTGATGAGG AGTGTGAGGC TGCTGTAGTT GCCGGAAATG TACCTGAAGC 60 TCCTCCGGTT CCACCAAAGC CGGCTGCACC TGACGGTACC CCTATTGTGT CTTCACTGGT 43568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TCCTCCGGTT CCACCAAAGC CGGCTGCACC TGACGGTACC CCTATTGTGT CTTCACTG.. 118 TAGTTTTCAG ACATCATTAT TTTTAATTAT GCCAATTTTG CCATTTTAGA GATGGCGAGG 43628 .......... .......... .......... .......... .......... .......... 118 AAGTGTTAAG TGGACCACCT TTTTCATTAG TTTTGGAGGA CTGTTTTGAT TGCTTATTGG 43688 .......... .......... .......... .......... .......... .......... 118 CTTTGGTTTT GGTGGCATAT TCTCTAATCT GCTAAACGTT ATTTTCTAAT CTCCGTATCA 43748 .......... .......... .......... .......... .......... .......... 118 AATTGTTACA GGAATTAGAT GTTTCATGAG TCCAGAGTGT TTGATTTGTT TGTAATTGAA 43808 .......... .......... .......... .......... .......... .......... 118 CTAGCCAGAT GTAAGTTGGA TACTATGGTG TATTTTACAT GTAATATACA TTGTTTCTGA 43868 .......... .......... .......... .......... .......... .......... 118 ATTACAAGTA ACTTACCAAC TGTCAAAATA GCAGAAGCAG TGGAGAACAA ATTGCTCTGA 43928 .......... .......... .......... .......... .......... .......... 118 CAACTTAGTC ATAATTGAGT ACAGGCATCT CCATAAATGA TAACTAACTT AGGATATTAA 43988 .......... .......... .......... .......... .......... .......... 118 AAATGGATTC ATCTACTGAA TTGAGGCAAA AATTTCATAA AATGCTAGTA CTGTATTGGA 44048 .......... .......... .......... .......... .......... .......... 118 AGACTGCTTA ACTATTGTTG ATGGGTGTTA TTACATTTGA ATTCAAGATT CTTTCAAACA 44108 .......... .......... .......... .......... .......... .......... 118 TTTATCCAGA GTTCTAGTTA CAGAAAGGCG AAAGCCTTAT AAAGGAAAGT GATCATACTT 44168 .......... .......... .......... .......... .......... .......... 118 TGAGAAAATT ACACCGGACT ATAAAATCTT GAAATTGACA GATAAGGTCT AACGACAACT 44228 .......... .......... .......... .......... .......... .......... 118 TCTTTGAACA TCTTTGACTA TTCTTATCTG GATGGAGGAT GCTGAATGTT GATGCGATAC 44288 .......... .......... .......... .......... .......... .......... 118 TTGCAAATTA CATGATATTT ACTTGTAGTG TATTTCTGGT ATTTTTAGAA CATTGAGGGT 44348 .......... .......... .......... .......... .......... .......... 118 CCTTATTCCA TTTACACAAG ATGATCAGCG ATCTTTGTGA GACATCCCTA TGATTACTTG 44408 .......... .......... .......... .......... .......... .......... 118 ACTCTGAAGT GGTGTAGTTA ATATTTTATC CTTCAACTTC TAGAAAAAAA TATCCTTCAA 44468 .......... .......... .......... .......... .......... .......... 118 CTTCTACTCT TCTTGTAGGT TGTCAGTGGG TACTACATTT ATAATTTTGT AAGTAATAGT 44528 .......... .......... .......... .......... .......... .......... 118 GTTAACTTGT TTAGTTTGTA TAACTGATAG CATCTTGGTT GAATTGTTGG ATGGTATGGT 44588 .......... .......... .......... .......... .......... .......... 118 GATAATGCTT TAATATAGAC TCAACACTGC ATCAGAAGTT GATAGATTGA TTTGCTATGT 44648 .......... .......... .......... .......... .......... .......... 118 GCCTGTAGCT AATGACTGGA TGTTGCTTGT ATAGCCAATT AATAGGAGAC CACGCCGTAA 44708 |||||| |||||||||| |||||||||| .......... .......... .......... ....CCAATT AATAGGAGAC CACGCCGTAA 144 TCGTAGGTCG TCAGCAGCAA GAGCTGCATT CCAGGAAACA AATATAAGCC CTGCAAATCT 44768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTAGGTCG TCAGCAGCAA GAGCTGCATT CCAGGAAACA AATATAAGCC CTGCAAATCT 204 TGTATATCCA CTATTTATTC ATGAGGGTGA GTACTTGTCT GAATTCCTCT CTGCTTATAA 44828 |||||||||| |||||||||| |||||| TGTATATCCA CTATTTATTC ATGAGG.... .......... .......... .......... 230 CATGTATCAA TCTGTTCTTA CGAATCACAC ACTTGCAGGT GAAGAGGACA CACCTATTGG 44888 || |||||||||| |||||||||| .......... .......... .......... ........GT GAAGAGGACA CACCTATTGG 252 AGCAATGCCT GGATGTTATA GGCTTGGATG GAGGCATGGT CTTGTTGAAG AGGTCGGTGA 44948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AGCAATGCCT GGATGTTATA GGCTTGGATG GAGGCATGGT CTTGTTGAAG AG........ 304 GCTATCCCTA GGATTCTTTG TCCTCTATAA TGTCTTTTTT TAGATCAGAA TTTCAGCATT 45008 .......... .......... .......... .......... .......... .......... 304 TTGGTTCCTT AATTCAATTC TTCTTTGTCT AATTGATCTT GTCATATAAT CCTGCTCCCT 45068 .......... .......... .......... .......... .......... .......... 304 GTTCTTCCAA ATTTTAGCTG GTGATAATGA AGTATCTGAT GCATTTGATC ACATAAATAG 45128 .......... .......... .......... .......... .......... .......... 304 CGAGCAATGT TCTTTATCAA GTATCTAATG TTTATGATAG GTGGAAGGTA GTTTCGTTTA 45188 .......... .......... .......... .......... .......... .......... 304 AGGCAGCCTG ACCACCGTAA CTCTACTTTG GGCCATAAGT AGCTCTCTCC TTGATTAATT 45248 .......... .......... .......... .......... .......... .......... 304 TTGATATGTT GACCTTGTAG CCCTGCTTTG TATTGGTTCA CAGTGTATCT AATTGATGAT 45308 .......... .......... .......... .......... .......... .......... 304 GATGTGCTGC ATTGGTCTTG TTGCTATGAT TTTGCTATAT CTTGAGGGTG ATTTGCTTTC 45368 .......... .......... .......... .......... .......... .......... 304 CATTGTCCAT TTGTTTTCCA TTATGTATGT TATTATGACC AGACCAGTAT CATTACAATA 45428 .......... .......... .......... .......... .......... .......... 304 TTGCTAGTAT TAATGATAAA AACCATTATC ATTACATTAT TGCTGGTATC AATGATCAAA 45488 .......... .......... .......... .......... .......... .......... 304 GTTTTACCAT AGCATTAGGG GTAAAGTGTC TTTCTTGTTT GGTGATCAGT CAACGAAGTC 45548 .......... .......... .......... .......... .......... .......... 304 ATTCTGGATA AACAAAACGC TATCCTCGTA ATTTGTTGTA GGTTTTTATT TTTCAATTTT 45608 .......... .......... .......... .......... .......... .......... 304 CGATGTTGTA TTTATTGGAG AGGGGTAGAG GGGCAGAGGG GCAGGCCCAT TATTCACTTT 45668 .......... .......... .......... .......... .......... .......... 304 GTTTTAAACC ATGCTCCAAG GGCTAGGGGG ATTTCTCTGT TACAAAAAAA AAAGATTTCC 45728 .......... .......... .......... .......... .......... .......... 304 TCTTTTTGGG TTGGGAAAAT ACATCACCGG ATTTTAGGCT AAATAAAGAC TATGATCATT 45788 .......... .......... .......... .......... .......... .......... 304 TGTGGGTACC AGTCACACAT GTCAGGATTA TCAACGGACA TGCCTGTCTA GATTCTGACT 45848 .......... .......... .......... .......... .......... .......... 304 GCTCTTGTTT GGCAAAAATA ATTAAAATAA CGCTGTCAAG AACTCTGCTC TCAGATTCCT 45908 .......... .......... .......... .......... .......... .......... 304 CTGAGGCACT CGCGATGTGT AATAAGAGAG GTGTGTGGTC TGGACATATT ATTCAGTATT 45968 .......... .......... .......... .......... .......... .......... 304 TTAAATATAT TCAAGACTTC AATTACAGAT ACCAGAACAA AGTATAAATT TCGAATTCAG 46028 .......... .......... .......... .......... .......... .......... 304 GTCCAATATT CATTGTAACT TTGTTAGGTT GGGTAGGATG AAAGACATTA TTTTTTCAAA 46088 .......... .......... .......... .......... .......... .......... 304 AGAAAGAAAG ACCTGCAAAG AATTCCTTTT CTTTTTTTTC ACCAAAACAG TATTTAATTA 46148 .......... .......... .......... .......... .......... .......... 304 TAATCTTCCA GTGAATAAAT CGATCTTTTT TTCCCATCTC AAAAAAGACT GATTTATTCA 46208 .......... .......... .......... .......... .......... .......... 304 CTGGAAGATG ATAGTTAAAT TCTGGTTTGG TAAAAAGGAA ATCTTTGCAG GTCCTAGGTG 46268 .......... .......... .......... .......... .......... .......... 304 CAGGTTTAAC TTTTAAGTGT AGATATCAGG AAAAAGGGAA GGACAATAAA CAGAGAAAAA 46328 .......... .......... .......... .......... .......... .......... 304 GAAAAAGAAA AAGAAATAGA AATGCATACA ACAACTATTA AAATTTACTA CTACACCTCA 46388 .......... .......... .......... .......... .......... .......... 304 ATCACAAGCA AATTGGGGGA TCAGACAAGC TACCATGTAT ACTCACGTAT ATACTTATTT 46448 .......... .......... .......... .......... .......... .......... 304 GCTAATGGGT TGAGAATGTA TAGGATGCTC TTTTAATTGG AGGAAATTAC CTTGGAGGCT 46508 .......... .......... .......... .......... .......... .......... 304 AATAAGTACT TTGGCGATAA TTGGTACTTT TACAATTCTT TTGTCCATGT TATTGACAGC 46568 .......... .......... .......... .......... .......... .......... 304 CTCATGTACA ATATTCAAGG AAACCTACAT TTACTTGAGT AGAAATCAAA CAAAGTACTT 46628 .......... .......... .......... .......... .......... .......... 304 GTAAGCTAAA ATTAGTTGCT GTAAATCTGT TGTAGCAGAA GTGGAGTCTC CAGTGGATGA 46688 .......... .......... .......... .......... .......... .......... 304 TACATGGGTA GGCTATTATA GATGGGTCTG TATTGCACTC AATTGCTCAT CTGCAGTTGC 46748 .......... .......... .......... .......... .......... .......... 304 CGCCTCTGAT TGAGAAGTAA ATACCAAATG GAACTTGAAC ATTTCTAGAA TTTTACCAGC 46808 .......... .......... .......... .......... .......... .......... 304 TTCCAGAATA TGATCATTCT TCACACTTAC TGTCATATGC TTTTAGAGGG CTCATATAAG 46868 .......... .......... .......... .......... .......... .......... 304 TCTTGTCGAT GATTTGGTTC CAAGCTTGCT GTCCGTGACA CATAATTTTC AGTACTTAAC 46928 .......... .......... .......... .......... .......... .......... 304 AAAACAACAA ATTGGCTTGG TTAAAGATAC ATCTAGATCA TATTTAAGGA TTCAACTGCG 46988 .......... .......... .......... .......... .......... .......... 304 ATCATAGCAC CTTTGTAATA CTTCTGTGCA TTCTTTTGAG CAAGTGGATT TACTTTTTCT 47048 .......... .......... .......... .......... .......... .......... 304 TATGCAGGTC GCAAAGGCAA GGGATGTTGG AGTCAACAGC ATTGTGCTCT TCCCAAAAGT 47108 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTC GCAAAGGCAA GGGATGTTGG AGTCAACAGC ATTGTGCTCT TCCCAAAAGT 357 TCCAGATGCT TTAAAGGTCC TCTTCTAGAC TTCTACCAGC ATAAATTTCC ATGTACCATC 47168 |||||||||| |||||| TCCAGATGCT TTAAAG.... .......... .......... .......... .......... 373 TGACTTCAGA TTATATAACT TGTTTCCTGC AACTTCAGAC CTCTACAGGA GATGAAGCTT 47228 || |||||||||| |||||||||| .......... .......... .......... ........AC CTCTACAGGA GATGAAGCTT 395 ACAATGACAA TGGATTAGTG CCCCGAACAA TACGTTTGCT GAAAGACAAA TACCCTGATC 47288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATGACAA TGGATTAGTG CCCCGAACAA TACGTTTGCT GAAAGACAAA TACCCTGATC 455 TTGTATGTCG ATACATATCA TCTGGTTTCT TTTATCTGCT TAAACAACTT TTCTGTGGGA 47348 || TT........ .......... .......... .......... .......... .......... 457 AAATCCTGGC GCTTCCTTTT ATGTTTGATG CGTTTTCAAT AGGTTATCTA CACTGATGTT 47408 |||||||| |||||||||| .......... .......... .......... .......... ..GTTATCTA CACTGATGTT 475 GCTTTGGATC CATATTCATC TGATGGGCAT GATGGCATTG TGAGAGAAGA TGGTAAGACA 47468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GCTTTGGATC CATATTCATC TGATGGGCAT GATGGCATTG TGAGAGAAGA TG........ 527 TAATTTTGTG TTCATACCAG CCTAATGAGA AAACCTTTTA TTGCCAAATT ACATAAAAAT 47528 .......... .......... .......... .......... .......... .......... 527 TAAGAAAAAA CAGTTCTAAT AGATATAATA CACATGAACC CATGGAATCC ATTCTGTAAA 47588 .......... .......... .......... .......... .......... .......... 527 TTCTATCTCA TATAGCATAT CCTATTATTG TAGCTTATGT TTATTATCTC TGTTAACTTT 47648 .......... .......... .......... .......... .......... .......... 527 GAATTGATGC TGATGCAATG AGGTAAGTTC TCTTTCTTGG TTATGGTGAT AGCTGTTAGT 47708 .......... .......... .......... .......... .......... .......... 527 GTACTTCAGT CTTTAGCTTC TTGAATTATT ATATGAAGGA GTAAGTTGTC TTGTTTACTG 47768 .......... .......... .......... .......... .......... .......... 527 AAATATTTGG ATGATGATCT TTTCTTTCAT CACTTCGGGT CACCATAAAG CATAAACCGC 47828 .......... .......... .......... .......... .......... .......... 527 CAGTAGCAAA ATTCCTCTTC AACACAAAAC CATTCTTTTT TGTTGAAATC ATTTCATCAA 47888 .......... .......... .......... .......... .......... .......... 527 ACATGAAAAC TTCATACATC TTACTTTTGT GACTCCTATT TGTAAGGTAA TAACTGATAG 47948 .......... .......... .......... .......... .......... .......... 527 CTTTTGAAAC TATACTGATT CTTGATGACA CTTTATCTCT ATCATGGATG CTTCCCTGGA 48008 .......... .......... .......... .......... .......... .......... 527 TTGCAATCTG AAATATAAAT GCAAGTTATA TTTATCAAAA GTAATTAAAG CTGCATTTAT 48068 .......... .......... .......... .......... .......... .......... 527 CATTGCAAAT AATTTTACAG AAAATATTTG CTGTGAAGAT GAGGAGAAAA TAACTTGTAT 48128 .......... .......... .......... .......... .......... .......... 527 TGGGCTTTTT AAGAGCTTAT GATAGATAAA CCTTTTTCTT GTTTTCTCTT TCTATGTATT 48188 .......... .......... .......... .......... .......... .......... 527 ATTTTAAAAA TAAAGATATG AACAAAAAAG GCCTTTATTT GGAAAAATTG GGAATGCTTT 48248 .......... .......... .......... .......... .......... .......... 527 TAATTCCTGT TGCAGTATAG TAATCTTTGT TTAGCAGCTG TAGGATTCCT AAAGCACCTT 48308 .......... .......... .......... .......... .......... .......... 527 ATAGTTTTTT TTAATTTTTG GGTAATACCA CTCTCAATTA GGAGTATCTA TAGTTCTGTT 48368 .......... .......... .......... .......... .......... .......... 527 TGATTTAGTT TTAACCTAAA AGGAAACCAA CAAACTATGT TGGTTTGATA AATAAACAAA 48428 .......... .......... .......... .......... .......... .......... 527 CCAAACTAAA TCAAATGTTT TTTTTTCAGT TTTTTTTCTT CGATTTTTTA GTCACGTGAA 48488 .......... .......... .......... .......... .......... .......... 527 ACACAAATTC AATTCACAGC AAAAGGTAAA ATCTCTCAAA TGTCAATACA TGTTTAGAAA 48548 .......... .......... .......... .......... .......... .......... 527 TAATCAAGCA GATAGATTAA CTTATCATCT ATTGAAACAT CCACATATGG GAAGTTCACC 48608 .......... .......... .......... .......... .......... .......... 527 TTGAGACATG ATAATTATCC ACTTCCAAAA CTAATAAAAC AAATATACAT CCATCTATGC 48668 .......... .......... .......... .......... .......... .......... 527 TGCCAAAATT AATTAAACTT AATGATTTAA AAATAATATA CAAATCACGC CTAAATGACT 48728 .......... .......... .......... .......... .......... .......... 527 TCAATATATG TGAATAGAAA ATTCAAGCAA GCATCACGAA CATGTTAAGA CAAATTTAAA 48788 .......... .......... .......... .......... .......... .......... 527 ATTTTTTTGT TATTAAAACT ATATAAAGTT CTAAAAGAAT ATCTACCAGA TATTTATGTC 48848 .......... .......... .......... .......... .......... .......... 527 TGTAGAATTA TACAAAATCC AATTGATACA AGTCAATGAA CAAGTTTTTT CAGTCAGTTT 48908 .......... .......... .......... .......... .......... .......... 527 GGTTTGGTTT TTTAGTAACA CCTAACTCTC TTGGAAGTTC TAATACTGCA GTTTGTATGT 48968 .......... .......... .......... .......... .......... .......... 527 GTTTGAGAAA GGCTTCCAAC AGTTGATACC TTTAGCATGG CCTTAGTTAT GAATGTTTGT 49028 .......... .......... .......... .......... .......... .......... 527 CAAAGTTTTG TTGGTGACAT TTGTACTTGT TTCTCTGTTG TTAATTGTGT ATCTCCTCTT 49088 .......... .......... .......... .......... .......... .......... 527 TTGCATCAAT GGTATTTTAT TTTCCATAAA AGGATTAGAA TTGGATGAAT TTCCTTGTTA 49148 .......... .......... .......... .......... .......... .......... 527 ATAGAGCTTG AGCGAAGACA AAATGTTTAA AGACGAAGAT AACACAAAAA TATTTGCCTT 49208 .......... .......... .......... .......... .......... .......... 527 TATGTGTTTA ATAAAAATGA ATGACCACAA ATGTACAGAG TTAATGGCTT TTTGAATACT 49268 .......... .......... .......... .......... .......... .......... 527 TAAGTTTGGT TTTGGTCTTC TGAAATGGCT GCAGGAGTTA TCATGAATGA CGAGACTGTG 49328 |||||| |||||||||| |||||||||| .......... .......... .......... ....GAGTTA TCATGAATGA CGAGACTGTG 553 CATCAGTTGT GCAAACAG 49346 |||||||||| |||||||| CATCAGTTGT GCAAACAG 571 hqPGS_C08HBa0037O11.1+_SGN-E211391+ (43449 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49346) ******************************************************************************** EST sequence 41 +strand 674 n (File: SGN-E253626+) 1 GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 61 CTGCCAATTA ATAGGAGACC ACGCCGTAAT CGTAGGTCGT CAGCAGCAAG AGCTGCATTC 121 CAGGAAACAA ATATAAGCCC TGCAAATCTT GTATATCCAC TATTTATTCA TGAGGGTGAA 181 GAGGACACAC CTATTGGAGC AATGCCTGGA TGTTATAGGC TTGGATGGAG GCATGGTCTT 241 GTTGAAGAGG TCGCAAAGGC AAGGGATGTT GGAGTCAACA GCATTGTGCT CTTCCCAAAA 301 GTTCCAGATG CTTTAAAGAC CTCTACAGGA GATGAAGCTT ACAATGACAA TGGATTAGTG 361 CCCCGAACAA TACGTTTGCT GAAAGACAAA TACCCTGATC TTGTTATCTA CACTGATGTT 421 GCTTTGGATC CATATTCATC TGATGGGCAT GATGGCATTG TGAGAGAAGA TGGAGTTATC 481 ATGAATGACG AGACTGTGCA TCAGTTGTGC AAACAGGCAG TTGCTCAGGC CAGAGCAGGA 541 GCAGATGTTG TCAGTCCAAG TGACATGATG GATGGTCGTG TCGGAGCAAT TCGAGCAGCT 601 CTTGATGCTG AAGGATTTCA GCATGTGTCA ATCATGTCAT ATACGGCAAA GTATGCAAGC 661 TCCTTTTATG GACC Predicted gene structure (within gDNA segment 42904 to 51650): Exon 1 43504 43566 ( 63 n); cDNA 1 63 ( 63 n); score: 1.000 Intron 1 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 44683 44794 ( 112 n); cDNA 64 175 ( 112 n); score: 1.000 Intron 2 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 44867 44940 ( 74 n); cDNA 176 249 ( 74 n); score: 1.000 Intron 3 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 47056 47124 ( 69 n); cDNA 250 318 ( 69 n); score: 1.000 Intron 4 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 47207 47290 ( 84 n); cDNA 319 402 ( 84 n); score: 1.000 Intron 5 47291 47390 ( 100 n); Pd: 0.910 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 6 47391 47460 ( 70 n); cDNA 403 472 ( 70 n); score: 1.000 Intron 6 47461 49302 (1842 n); Pd: 0.957 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 49303 49358 ( 56 n); cDNA 473 528 ( 56 n); score: 1.000 Intron 7 49359 50705 (1347 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 8 50706 50827 ( 122 n); cDNA 529 650 ( 122 n); score: 1.000 Intron 8 50828 51269 ( 442 n); Pd: 0.981 (s: 1.00), Pa: 0.998 (s: 0) Exon 9 51270 51293 ( 24 n); cDNA 651 674 ( 24 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E253626+ 1.000 674 1.000 C PGS_C08HBa0037O11.1+_SGN-E253626+ (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51293) Alignment (genomic DNA sequence = upper lines): GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 43563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 60 CTGGTTAGTT TTCAGACATC ATTATTTTTA ATTATGCCAA TTTTGCCATT TTAGAGATGG 43623 ||| CTG....... .......... .......... .......... .......... .......... 63 CGAGGAAGTG TTAAGTGGAC CACCTTTTTC ATTAGTTTTG GAGGACTGTT TTGATTGCTT 43683 .......... .......... .......... .......... .......... .......... 63 ATTGGCTTTG GTTTTGGTGG CATATTCTCT AATCTGCTAA ACGTTATTTT CTAATCTCCG 43743 .......... .......... .......... .......... .......... .......... 63 TATCAAATTG TTACAGGAAT TAGATGTTTC ATGAGTCCAG AGTGTTTGAT TTGTTTGTAA 43803 .......... .......... .......... .......... .......... .......... 63 TTGAACTAGC CAGATGTAAG TTGGATACTA TGGTGTATTT TACATGTAAT ATACATTGTT 43863 .......... .......... .......... .......... .......... .......... 63 TCTGAATTAC AAGTAACTTA CCAACTGTCA AAATAGCAGA AGCAGTGGAG AACAAATTGC 43923 .......... .......... .......... .......... .......... .......... 63 TCTGACAACT TAGTCATAAT TGAGTACAGG CATCTCCATA AATGATAACT AACTTAGGAT 43983 .......... .......... .......... .......... .......... .......... 63 ATTAAAAATG GATTCATCTA CTGAATTGAG GCAAAAATTT CATAAAATGC TAGTACTGTA 44043 .......... .......... .......... .......... .......... .......... 63 TTGGAAGACT GCTTAACTAT TGTTGATGGG TGTTATTACA TTTGAATTCA AGATTCTTTC 44103 .......... .......... .......... .......... .......... .......... 63 AAACATTTAT CCAGAGTTCT AGTTACAGAA AGGCGAAAGC CTTATAAAGG AAAGTGATCA 44163 .......... .......... .......... .......... .......... .......... 63 TACTTTGAGA AAATTACACC GGACTATAAA ATCTTGAAAT TGACAGATAA GGTCTAACGA 44223 .......... .......... .......... .......... .......... .......... 63 CAACTTCTTT GAACATCTTT GACTATTCTT ATCTGGATGG AGGATGCTGA ATGTTGATGC 44283 .......... .......... .......... .......... .......... .......... 63 GATACTTGCA AATTACATGA TATTTACTTG TAGTGTATTT CTGGTATTTT TAGAACATTG 44343 .......... .......... .......... .......... .......... .......... 63 AGGGTCCTTA TTCCATTTAC ACAAGATGAT CAGCGATCTT TGTGAGACAT CCCTATGATT 44403 .......... .......... .......... .......... .......... .......... 63 ACTTGACTCT GAAGTGGTGT AGTTAATATT TTATCCTTCA ACTTCTAGAA AAAAATATCC 44463 .......... .......... .......... .......... .......... .......... 63 TTCAACTTCT ACTCTTCTTG TAGGTTGTCA GTGGGTACTA CATTTATAAT TTTGTAAGTA 44523 .......... .......... .......... .......... .......... .......... 63 ATAGTGTTAA CTTGTTTAGT TTGTATAACT GATAGCATCT TGGTTGAATT GTTGGATGGT 44583 .......... .......... .......... .......... .......... .......... 63 ATGGTGATAA TGCTTTAATA TAGACTCAAC ACTGCATCAG AAGTTGATAG ATTGATTTGC 44643 .......... .......... .......... .......... .......... .......... 63 TATGTGCCTG TAGCTAATGA CTGGATGTTG CTTGTATAGC CAATTAATAG GAGACCACGC 44703 | |||||||||| |||||||||| .......... .......... .......... .........C CAATTAATAG GAGACCACGC 84 CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 44763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 144 AATCTTGTAT ATCCACTATT TATTCATGAG GGTGAGTACT TGTCTGAATT CCTCTCTGCT 44823 |||||||||| |||||||||| |||||||||| | AATCTTGTAT ATCCACTATT TATTCATGAG G......... .......... .......... 175 TATAACATGT ATCAATCTGT TCTTACGAAT CACACACTTG CAGGTGAAGA GGACACACCT 44883 ||||||| |||||||||| .......... .......... .......... .......... ...GTGAAGA GGACACACCT 192 ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAGGTC 44943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAG... 249 GGTGAGCTAT CCCTAGGATT CTTTGTCCTC TATAATGTCT TTTTTTAGAT CAGAATTTCA 45003 .......... .......... .......... .......... .......... .......... 249 GCATTTTGGT TCCTTAATTC AATTCTTCTT TGTCTAATTG ATCTTGTCAT ATAATCCTGC 45063 .......... .......... .......... .......... .......... .......... 249 TCCCTGTTCT TCCAAATTTT AGCTGGTGAT AATGAAGTAT CTGATGCATT TGATCACATA 45123 .......... .......... .......... .......... .......... .......... 249 AATAGCGAGC AATGTTCTTT ATCAAGTATC TAATGTTTAT GATAGGTGGA AGGTAGTTTC 45183 .......... .......... .......... .......... .......... .......... 249 GTTTAAGGCA GCCTGACCAC CGTAACTCTA CTTTGGGCCA TAAGTAGCTC TCTCCTTGAT 45243 .......... .......... .......... .......... .......... .......... 249 TAATTTTGAT ATGTTGACCT TGTAGCCCTG CTTTGTATTG GTTCACAGTG TATCTAATTG 45303 .......... .......... .......... .......... .......... .......... 249 ATGATGATGT GCTGCATTGG TCTTGTTGCT ATGATTTTGC TATATCTTGA GGGTGATTTG 45363 .......... .......... .......... .......... .......... .......... 249 CTTTCCATTG TCCATTTGTT TTCCATTATG TATGTTATTA TGACCAGACC AGTATCATTA 45423 .......... .......... .......... .......... .......... .......... 249 CAATATTGCT AGTATTAATG ATAAAAACCA TTATCATTAC ATTATTGCTG GTATCAATGA 45483 .......... .......... .......... .......... .......... .......... 249 TCAAAGTTTT ACCATAGCAT TAGGGGTAAA GTGTCTTTCT TGTTTGGTGA TCAGTCAACG 45543 .......... .......... .......... .......... .......... .......... 249 AAGTCATTCT GGATAAACAA AACGCTATCC TCGTAATTTG TTGTAGGTTT TTATTTTTCA 45603 .......... .......... .......... .......... .......... .......... 249 ATTTTCGATG TTGTATTTAT TGGAGAGGGG TAGAGGGGCA GAGGGGCAGG CCCATTATTC 45663 .......... .......... .......... .......... .......... .......... 249 ACTTTGTTTT AAACCATGCT CCAAGGGCTA GGGGGATTTC TCTGTTACAA AAAAAAAAGA 45723 .......... .......... .......... .......... .......... .......... 249 TTTCCTCTTT TTGGGTTGGG AAAATACATC ACCGGATTTT AGGCTAAATA AAGACTATGA 45783 .......... .......... .......... .......... .......... .......... 249 TCATTTGTGG GTACCAGTCA CACATGTCAG GATTATCAAC GGACATGCCT GTCTAGATTC 45843 .......... .......... .......... .......... .......... .......... 249 TGACTGCTCT TGTTTGGCAA AAATAATTAA AATAACGCTG TCAAGAACTC TGCTCTCAGA 45903 .......... .......... .......... .......... .......... .......... 249 TTCCTCTGAG GCACTCGCGA TGTGTAATAA GAGAGGTGTG TGGTCTGGAC ATATTATTCA 45963 .......... .......... .......... .......... .......... .......... 249 GTATTTTAAA TATATTCAAG ACTTCAATTA CAGATACCAG AACAAAGTAT AAATTTCGAA 46023 .......... .......... .......... .......... .......... .......... 249 TTCAGGTCCA ATATTCATTG TAACTTTGTT AGGTTGGGTA GGATGAAAGA CATTATTTTT 46083 .......... .......... .......... .......... .......... .......... 249 TCAAAAGAAA GAAAGACCTG CAAAGAATTC CTTTTCTTTT TTTTCACCAA AACAGTATTT 46143 .......... .......... .......... .......... .......... .......... 249 AATTATAATC TTCCAGTGAA TAAATCGATC TTTTTTTCCC ATCTCAAAAA AGACTGATTT 46203 .......... .......... .......... .......... .......... .......... 249 ATTCACTGGA AGATGATAGT TAAATTCTGG TTTGGTAAAA AGGAAATCTT TGCAGGTCCT 46263 .......... .......... .......... .......... .......... .......... 249 AGGTGCAGGT TTAACTTTTA AGTGTAGATA TCAGGAAAAA GGGAAGGACA ATAAACAGAG 46323 .......... .......... .......... .......... .......... .......... 249 AAAAAGAAAA AGAAAAAGAA ATAGAAATGC ATACAACAAC TATTAAAATT TACTACTACA 46383 .......... .......... .......... .......... .......... .......... 249 CCTCAATCAC AAGCAAATTG GGGGATCAGA CAAGCTACCA TGTATACTCA CGTATATACT 46443 .......... .......... .......... .......... .......... .......... 249 TATTTGCTAA TGGGTTGAGA ATGTATAGGA TGCTCTTTTA ATTGGAGGAA ATTACCTTGG 46503 .......... .......... .......... .......... .......... .......... 249 AGGCTAATAA GTACTTTGGC GATAATTGGT ACTTTTACAA TTCTTTTGTC CATGTTATTG 46563 .......... .......... .......... .......... .......... .......... 249 ACAGCCTCAT GTACAATATT CAAGGAAACC TACATTTACT TGAGTAGAAA TCAAACAAAG 46623 .......... .......... .......... .......... .......... .......... 249 TACTTGTAAG CTAAAATTAG TTGCTGTAAA TCTGTTGTAG CAGAAGTGGA GTCTCCAGTG 46683 .......... .......... .......... .......... .......... .......... 249 GATGATACAT GGGTAGGCTA TTATAGATGG GTCTGTATTG CACTCAATTG CTCATCTGCA 46743 .......... .......... .......... .......... .......... .......... 249 GTTGCCGCCT CTGATTGAGA AGTAAATACC AAATGGAACT TGAACATTTC TAGAATTTTA 46803 .......... .......... .......... .......... .......... .......... 249 CCAGCTTCCA GAATATGATC ATTCTTCACA CTTACTGTCA TATGCTTTTA GAGGGCTCAT 46863 .......... .......... .......... .......... .......... .......... 249 ATAAGTCTTG TCGATGATTT GGTTCCAAGC TTGCTGTCCG TGACACATAA TTTTCAGTAC 46923 .......... .......... .......... .......... .......... .......... 249 TTAACAAAAC AACAAATTGG CTTGGTTAAA GATACATCTA GATCATATTT AAGGATTCAA 46983 .......... .......... .......... .......... .......... .......... 249 CTGCGATCAT AGCACCTTTG TAATACTTCT GTGCATTCTT TTGAGCAAGT GGATTTACTT 47043 .......... .......... .......... .......... .......... .......... 249 TTTCTTATGC AGGTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 47103 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 297 AAAGTTCCAG ATGCTTTAAA GGTCCTCTTC TAGACTTCTA CCAGCATAAA TTTCCATGTA 47163 |||||||||| |||||||||| | AAAGTTCCAG ATGCTTTAAA G......... .......... .......... .......... 318 CCATCTGACT TCAGATTATA TAACTTGTTT CCTGCAACTT CAGACCTCTA CAGGAGATGA 47223 ||||||| |||||||||| .......... .......... .......... .......... ...ACCTCTA CAGGAGATGA 335 AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 47283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 395 TGATCTTGTA TGTCGATACA TATCATCTGG TTTCTTTTAT CTGCTTAAAC AACTTTTCTG 47343 ||||||| TGATCTT... .......... .......... .......... .......... .......... 402 TGGGAAAATC CTGGCGCTTC CTTTTATGTT TGATGCGTTT TCAATAGGTT ATCTACACTG 47403 ||| |||||||||| .......... .......... .......... .......... .......GTT ATCTACACTG 415 ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATGGTA 47463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATG... 472 AGACATAATT TTGTGTTCAT ACCAGCCTAA TGAGAAAACC TTTTATTGCC AAATTACATA 47523 .......... .......... .......... .......... .......... .......... 472 AAAATTAAGA AAAAACAGTT CTAATAGATA TAATACACAT GAACCCATGG AATCCATTCT 47583 .......... .......... .......... .......... .......... .......... 472 GTAAATTCTA TCTCATATAG CATATCCTAT TATTGTAGCT TATGTTTATT ATCTCTGTTA 47643 .......... .......... .......... .......... .......... .......... 472 ACTTTGAATT GATGCTGATG CAATGAGGTA AGTTCTCTTT CTTGGTTATG GTGATAGCTG 47703 .......... .......... .......... .......... .......... .......... 472 TTAGTGTACT TCAGTCTTTA GCTTCTTGAA TTATTATATG AAGGAGTAAG TTGTCTTGTT 47763 .......... .......... .......... .......... .......... .......... 472 TACTGAAATA TTTGGATGAT GATCTTTTCT TTCATCACTT CGGGTCACCA TAAAGCATAA 47823 .......... .......... .......... .......... .......... .......... 472 ACCGCCAGTA GCAAAATTCC TCTTCAACAC AAAACCATTC TTTTTTGTTG AAATCATTTC 47883 .......... .......... .......... .......... .......... .......... 472 ATCAAACATG AAAACTTCAT ACATCTTACT TTTGTGACTC CTATTTGTAA GGTAATAACT 47943 .......... .......... .......... .......... .......... .......... 472 GATAGCTTTT GAAACTATAC TGATTCTTGA TGACACTTTA TCTCTATCAT GGATGCTTCC 48003 .......... .......... .......... .......... .......... .......... 472 CTGGATTGCA ATCTGAAATA TAAATGCAAG TTATATTTAT CAAAAGTAAT TAAAGCTGCA 48063 .......... .......... .......... .......... .......... .......... 472 TTTATCATTG CAAATAATTT TACAGAAAAT ATTTGCTGTG AAGATGAGGA GAAAATAACT 48123 .......... .......... .......... .......... .......... .......... 472 TGTATTGGGC TTTTTAAGAG CTTATGATAG ATAAACCTTT TTCTTGTTTT CTCTTTCTAT 48183 .......... .......... .......... .......... .......... .......... 472 GTATTATTTT AAAAATAAAG ATATGAACAA AAAAGGCCTT TATTTGGAAA AATTGGGAAT 48243 .......... .......... .......... .......... .......... .......... 472 GCTTTTAATT CCTGTTGCAG TATAGTAATC TTTGTTTAGC AGCTGTAGGA TTCCTAAAGC 48303 .......... .......... .......... .......... .......... .......... 472 ACCTTATAGT TTTTTTTAAT TTTTGGGTAA TACCACTCTC AATTAGGAGT ATCTATAGTT 48363 .......... .......... .......... .......... .......... .......... 472 CTGTTTGATT TAGTTTTAAC CTAAAAGGAA ACCAACAAAC TATGTTGGTT TGATAAATAA 48423 .......... .......... .......... .......... .......... .......... 472 ACAAACCAAA CTAAATCAAA TGTTTTTTTT TCAGTTTTTT TTCTTCGATT TTTTAGTCAC 48483 .......... .......... .......... .......... .......... .......... 472 GTGAAACACA AATTCAATTC ACAGCAAAAG GTAAAATCTC TCAAATGTCA ATACATGTTT 48543 .......... .......... .......... .......... .......... .......... 472 AGAAATAATC AAGCAGATAG ATTAACTTAT CATCTATTGA AACATCCACA TATGGGAAGT 48603 .......... .......... .......... .......... .......... .......... 472 TCACCTTGAG ACATGATAAT TATCCACTTC CAAAACTAAT AAAACAAATA TACATCCATC 48663 .......... .......... .......... .......... .......... .......... 472 TATGCTGCCA AAATTAATTA AACTTAATGA TTTAAAAATA ATATACAAAT CACGCCTAAA 48723 .......... .......... .......... .......... .......... .......... 472 TGACTTCAAT ATATGTGAAT AGAAAATTCA AGCAAGCATC ACGAACATGT TAAGACAAAT 48783 .......... .......... .......... .......... .......... .......... 472 TTAAAATTTT TTTGTTATTA AAACTATATA AAGTTCTAAA AGAATATCTA CCAGATATTT 48843 .......... .......... .......... .......... .......... .......... 472 ATGTCTGTAG AATTATACAA AATCCAATTG ATACAAGTCA ATGAACAAGT TTTTTCAGTC 48903 .......... .......... .......... .......... .......... .......... 472 AGTTTGGTTT GGTTTTTTAG TAACACCTAA CTCTCTTGGA AGTTCTAATA CTGCAGTTTG 48963 .......... .......... .......... .......... .......... .......... 472 TATGTGTTTG AGAAAGGCTT CCAACAGTTG ATACCTTTAG CATGGCCTTA GTTATGAATG 49023 .......... .......... .......... .......... .......... .......... 472 TTTGTCAAAG TTTTGTTGGT GACATTTGTA CTTGTTTCTC TGTTGTTAAT TGTGTATCTC 49083 .......... .......... .......... .......... .......... .......... 472 CTCTTTTGCA TCAATGGTAT TTTATTTTCC ATAAAAGGAT TAGAATTGGA TGAATTTCCT 49143 .......... .......... .......... .......... .......... .......... 472 TGTTAATAGA GCTTGAGCGA AGACAAAATG TTTAAAGACG AAGATAACAC AAAAATATTT 49203 .......... .......... .......... .......... .......... .......... 472 GCCTTTATGT GTTTAATAAA AATGAATGAC CACAAATGTA CAGAGTTAAT GGCTTTTTGA 49263 .......... .......... .......... .......... .......... .......... 472 ATACTTAAGT TTGGTTTTGG TCTTCTGAAA TGGCTGCAGG AGTTATCATG AATGACGAGA 49323 | |||||||||| |||||||||| .......... .......... .......... .........G AGTTATCATG AATGACGAGA 493 CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CTCAGGTTAT CTTCTATTTC ATATGATAAT 49383 |||||||||| |||||||||| |||||||||| ||||| CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CTCAG..... .......... .......... 528 GTTTCTTCAC AACAGACAAG CTTCCATCGC TGTTTCTACA CTTGCTTATA TACATATTTC 49443 .......... .......... .......... .......... .......... .......... 528 ATTTTGAACT TTGTTGAGCT GCACCATTTC GTGTTCTTCG AGAATAATTT CTGTAATGCT 49503 .......... .......... .......... .......... .......... .......... 528 GGCTGAGTGT TTGACTTGAG AAGTTGAGAT ATTATTCTTA CTTTTGCAAG TAGTGTGACC 49563 .......... .......... .......... .......... .......... .......... 528 TTACCGGGAA AACTATTCAC CATGTCATTT TGCTGGATAT AGAGATTAGA GGCTGATGGC 49623 .......... .......... .......... .......... .......... .......... 528 TAAATATCTA GTTGAAGAAC AATTATTATT GATGGTCGCC ATCTCTTTCT TTTTATTGTT 49683 .......... .......... .......... .......... .......... .......... 528 TTTATTCCTT TCTTTTACCT GCTATTGTTT CTTTTAAGAC TGAACATGAT TGTAGTCATT 49743 .......... .......... .......... .......... .......... .......... 528 ATGATTACTA AGTATAGAAG CTTACAATCC CAAAAAGGTT TGATGGCCAC CATCTCTTTC 49803 .......... .......... .......... .......... .......... .......... 528 TTTTTATTGC TTTTATTCCT TTCATTTACC TACTATTGTT TCTTTTAAGA CTGAACATGA 49863 .......... .......... .......... .......... .......... .......... 528 TTGTAGTCAT TATGATTACT AAGTATAGAA GCTTACAATC CCAAAAAGGT TAATTCATCC 49923 .......... .......... .......... .......... .......... .......... 528 CAAGTGGGGA TACAGCGACA TTGGTGGAAT AATGCTAGTC ATGCAGGAAA ACCAGCCTGA 49983 .......... .......... .......... .......... .......... .......... 528 GTGGGTGTAA TAGGTTGAAG GCAATGGCGC TGAAGATTTG GGTGGGTGGG TAAGGGCATT 50043 .......... .......... .......... .......... .......... .......... 528 GTCAGAGAGA AAATTGGGAA ATAACACATC ATTTAGTTTT ATTTTATGCG GCACCACATG 50103 .......... .......... .......... .......... .......... .......... 528 TAGTACTGGA TGTTACTCAG GAATTAATTT TCAAATAGTA TCATGTTAGT AACTCCACAG 50163 .......... .......... .......... .......... .......... .......... 528 GGGAGTGTCT GTGTGACTAC TACTCTCAAA TCTTCAATAA CTAGGCCATT AGATTGCAAA 50223 .......... .......... .......... .......... .......... .......... 528 CTAAGTCATT TTGCAGTTAG TCAAACCAGG TGGTGATGAA CACTTCTAGG GTTCTCAATA 50283 .......... .......... .......... .......... .......... .......... 528 ACTGCTCTTA TGTATACTTG TTTGTCTGTG TATCCACAAG AATCTGAACC AACAACTTGC 50343 .......... .......... .......... .......... .......... .......... 528 AAGTTCAATA TATCAGCATA GAAGCCCAAT ACGACCTCAA ACAACAGAAA AGAAGAAACT 50403 .......... .......... .......... .......... .......... .......... 528 AGCTGTTGAA AAACAGTCTT CTAACTTTAA AAAAAAAAAA CCGGAGTAAC CAAATTACAA 50463 .......... .......... .......... .......... .......... .......... 528 CACTGAATAA TATATCCTAA AATATGATTA AGTTCAGTAC TCTTTCCAAT TGATGATGCT 50523 .......... .......... .......... .......... .......... .......... 528 AGCTCTTGAA CTTGGTTTTG TCGTTGTGAA TAATGAATAT AATGCTTTTC TAAACTAAAG 50583 .......... .......... .......... .......... .......... .......... 528 CCAGGTATAA ATTAGGTGTC TGTTCATTTT CCCTTTGCTC TTTTATGCTT GCATGCATTT 50643 .......... .......... .......... .......... .......... .......... 528 TATTGATAAT CTTTTATCAA AATGCAGTGT CTAATCTTGT TATTTCTCTT CTTTTATCTT 50703 .......... .......... .......... .......... .......... .......... 528 AGGCCAGAGC AGGAGCAGAT GTTGTCAGTC CAAGTGACAT GATGGATGGT CGTGTCGGAG 50763 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GCCAGAGC AGGAGCAGAT GTTGTCAGTC CAAGTGACAT GATGGATGGT CGTGTCGGAG 586 CAATTCGAGC AGCTCTTGAT GCTGAAGGAT TTCAGCATGT GTCAATCATG TCATATACGG 50823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTCGAGC AGCTCTTGAT GCTGAAGGAT TTCAGCATGT GTCAATCATG TCATATACGG 646 CAAAGTAATT TTCAGAACTC ATAAGTTCTG TCAATGTAGA TATTATATAT AAGTCCTGGA 50883 |||| CAAA...... .......... .......... .......... .......... .......... 650 AATATTTAGT TGTTTGCAGA TAGATTCAGT ATTCAATAGA TTCAGTATTC AATGAGGCCA 50943 .......... .......... .......... .......... .......... .......... 650 TTTTTCTATG TTTGTGCTTT ACCCCTCTTG TATATTGAGA AGTATATCTT ACATCTTAGA 51003 .......... .......... .......... .......... .......... .......... 650 TCAAAGCCTA AATGGGTTAG CATCATCATA TGGTAACTTC TCATTTTATT TTTTAATGTA 51063 .......... .......... .......... .......... .......... .......... 650 AGCACTCAGA GGCAGCTAAA GATCTTATTC TTTTCATGTA AGAGAATTTG GTGATCAGTC 51123 .......... .......... .......... .......... .......... .......... 650 TCTCCAATGG TTCCGGATAT TATTGGTCTA AGAACTTAGA ACTCAGAGCT TTGTTTATTT 51183 .......... .......... .......... .......... .......... .......... 650 TATTTTTTTG CTTTTATGGA TTCTTTAATA TTGAAACTCA ACTTCCATCT TTTTTTTTTG 51243 .......... .......... .......... .......... .......... .......... 650 ACTTGTTAGC TTGAATTATA TTGCAGGTAT GCAAGCTCCT TTTATGGACC 51293 |||| |||||||||| |||||||||| .......... .......... ......GTAT GCAAGCTCCT TTTATGGACC 674 hqPGS_C08HBa0037O11.1+_SGN-E253626+ (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51293) ******************************************************************************** EST sequence 69 +strand 582 n (File: SGN-E259625+) 1 GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 61 CTGCCAATTA ATAGGAGACC ACGCCGTAAT CGTAGGTCGT CAGCAGCAAG AGCTGCATTC 121 CAGGAAACAA ATATAAGCCC TGCAAATCTT GTATATCCAC TATTTATTCA TGAGGGTGAA 181 GAGGACACAC CTATTGGAGC AATGCCTGGA TGTTATAGGC TTGGATGGAG GCATGGTCTT 241 GTTGAAGAGG TCGCAAAGGC AAGGGATGTT GGAGTCAACA GCATTGTGCT CTTCCCAAAA 301 GTTCCAGATG CTTTAAAGAC CTCTACAGGA GATGAAGCTT ACAATGACAA TGGATTAGTG 361 CCCCGAACAA TACGTTTGCT GAAAGACAAA TACCCTGATC TTGTTATCTA CACTGATGTT 421 GCTTTGGATC CATATTCATC TGATGGGCAT GATGGCATTG TGAGAGAAGA TGGAGTTATC 481 ATGAATGACG AGACTGTGCA TCAGTTGTGC AAACAGGCAG TTGCTCATGC CAGAGCAGGA 541 GCAGATGTTG TCAGTCCAAG TGACATGATG GATGGTCGTG TC Predicted gene structure (within gDNA segment 42904 to 51369): Exon 1 43504 43566 ( 63 n); cDNA 1 63 ( 63 n); score: 1.000 Intron 1 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 44683 44794 ( 112 n); cDNA 64 175 ( 112 n); score: 1.000 Intron 2 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 44867 44940 ( 74 n); cDNA 176 249 ( 74 n); score: 1.000 Intron 3 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 47056 47124 ( 69 n); cDNA 250 318 ( 69 n); score: 1.000 Intron 4 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 47207 47290 ( 84 n); cDNA 319 402 ( 84 n); score: 1.000 Intron 5 47291 47390 ( 100 n); Pd: 0.910 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 6 47391 47460 ( 70 n); cDNA 403 472 ( 70 n); score: 1.000 Intron 6 47461 49302 (1842 n); Pd: 0.957 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 49303 49358 ( 56 n); cDNA 473 528 ( 56 n); score: 0.982 Intron 7 49359 50705 (1347 n); Pd: 0.995 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 8 50706 50759 ( 54 n); cDNA 529 582 ( 54 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E259625+ 0.998 582 1.000 C PGS_C08HBa0037O11.1+_SGN-E259625+ (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50759) Alignment (genomic DNA sequence = upper lines): GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 43563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 60 CTGGTTAGTT TTCAGACATC ATTATTTTTA ATTATGCCAA TTTTGCCATT TTAGAGATGG 43623 ||| CTG....... .......... .......... .......... .......... .......... 63 CGAGGAAGTG TTAAGTGGAC CACCTTTTTC ATTAGTTTTG GAGGACTGTT TTGATTGCTT 43683 .......... .......... .......... .......... .......... .......... 63 ATTGGCTTTG GTTTTGGTGG CATATTCTCT AATCTGCTAA ACGTTATTTT CTAATCTCCG 43743 .......... .......... .......... .......... .......... .......... 63 TATCAAATTG TTACAGGAAT TAGATGTTTC ATGAGTCCAG AGTGTTTGAT TTGTTTGTAA 43803 .......... .......... .......... .......... .......... .......... 63 TTGAACTAGC CAGATGTAAG TTGGATACTA TGGTGTATTT TACATGTAAT ATACATTGTT 43863 .......... .......... .......... .......... .......... .......... 63 TCTGAATTAC AAGTAACTTA CCAACTGTCA AAATAGCAGA AGCAGTGGAG AACAAATTGC 43923 .......... .......... .......... .......... .......... .......... 63 TCTGACAACT TAGTCATAAT TGAGTACAGG CATCTCCATA AATGATAACT AACTTAGGAT 43983 .......... .......... .......... .......... .......... .......... 63 ATTAAAAATG GATTCATCTA CTGAATTGAG GCAAAAATTT CATAAAATGC TAGTACTGTA 44043 .......... .......... .......... .......... .......... .......... 63 TTGGAAGACT GCTTAACTAT TGTTGATGGG TGTTATTACA TTTGAATTCA AGATTCTTTC 44103 .......... .......... .......... .......... .......... .......... 63 AAACATTTAT CCAGAGTTCT AGTTACAGAA AGGCGAAAGC CTTATAAAGG AAAGTGATCA 44163 .......... .......... .......... .......... .......... .......... 63 TACTTTGAGA AAATTACACC GGACTATAAA ATCTTGAAAT TGACAGATAA GGTCTAACGA 44223 .......... .......... .......... .......... .......... .......... 63 CAACTTCTTT GAACATCTTT GACTATTCTT ATCTGGATGG AGGATGCTGA ATGTTGATGC 44283 .......... .......... .......... .......... .......... .......... 63 GATACTTGCA AATTACATGA TATTTACTTG TAGTGTATTT CTGGTATTTT TAGAACATTG 44343 .......... .......... .......... .......... .......... .......... 63 AGGGTCCTTA TTCCATTTAC ACAAGATGAT CAGCGATCTT TGTGAGACAT CCCTATGATT 44403 .......... .......... .......... .......... .......... .......... 63 ACTTGACTCT GAAGTGGTGT AGTTAATATT TTATCCTTCA ACTTCTAGAA AAAAATATCC 44463 .......... .......... .......... .......... .......... .......... 63 TTCAACTTCT ACTCTTCTTG TAGGTTGTCA GTGGGTACTA CATTTATAAT TTTGTAAGTA 44523 .......... .......... .......... .......... .......... .......... 63 ATAGTGTTAA CTTGTTTAGT TTGTATAACT GATAGCATCT TGGTTGAATT GTTGGATGGT 44583 .......... .......... .......... .......... .......... .......... 63 ATGGTGATAA TGCTTTAATA TAGACTCAAC ACTGCATCAG AAGTTGATAG ATTGATTTGC 44643 .......... .......... .......... .......... .......... .......... 63 TATGTGCCTG TAGCTAATGA CTGGATGTTG CTTGTATAGC CAATTAATAG GAGACCACGC 44703 | |||||||||| |||||||||| .......... .......... .......... .........C CAATTAATAG GAGACCACGC 84 CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 44763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 144 AATCTTGTAT ATCCACTATT TATTCATGAG GGTGAGTACT TGTCTGAATT CCTCTCTGCT 44823 |||||||||| |||||||||| |||||||||| | AATCTTGTAT ATCCACTATT TATTCATGAG G......... .......... .......... 175 TATAACATGT ATCAATCTGT TCTTACGAAT CACACACTTG CAGGTGAAGA GGACACACCT 44883 ||||||| |||||||||| .......... .......... .......... .......... ...GTGAAGA GGACACACCT 192 ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAGGTC 44943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAG... 249 GGTGAGCTAT CCCTAGGATT CTTTGTCCTC TATAATGTCT TTTTTTAGAT CAGAATTTCA 45003 .......... .......... .......... .......... .......... .......... 249 GCATTTTGGT TCCTTAATTC AATTCTTCTT TGTCTAATTG ATCTTGTCAT ATAATCCTGC 45063 .......... .......... .......... .......... .......... .......... 249 TCCCTGTTCT TCCAAATTTT AGCTGGTGAT AATGAAGTAT CTGATGCATT TGATCACATA 45123 .......... .......... .......... .......... .......... .......... 249 AATAGCGAGC AATGTTCTTT ATCAAGTATC TAATGTTTAT GATAGGTGGA AGGTAGTTTC 45183 .......... .......... .......... .......... .......... .......... 249 GTTTAAGGCA GCCTGACCAC CGTAACTCTA CTTTGGGCCA TAAGTAGCTC TCTCCTTGAT 45243 .......... .......... .......... .......... .......... .......... 249 TAATTTTGAT ATGTTGACCT TGTAGCCCTG CTTTGTATTG GTTCACAGTG TATCTAATTG 45303 .......... .......... .......... .......... .......... .......... 249 ATGATGATGT GCTGCATTGG TCTTGTTGCT ATGATTTTGC TATATCTTGA GGGTGATTTG 45363 .......... .......... .......... .......... .......... .......... 249 CTTTCCATTG TCCATTTGTT TTCCATTATG TATGTTATTA TGACCAGACC AGTATCATTA 45423 .......... .......... .......... .......... .......... .......... 249 CAATATTGCT AGTATTAATG ATAAAAACCA TTATCATTAC ATTATTGCTG GTATCAATGA 45483 .......... .......... .......... .......... .......... .......... 249 TCAAAGTTTT ACCATAGCAT TAGGGGTAAA GTGTCTTTCT TGTTTGGTGA TCAGTCAACG 45543 .......... .......... .......... .......... .......... .......... 249 AAGTCATTCT GGATAAACAA AACGCTATCC TCGTAATTTG TTGTAGGTTT TTATTTTTCA 45603 .......... .......... .......... .......... .......... .......... 249 ATTTTCGATG TTGTATTTAT TGGAGAGGGG TAGAGGGGCA GAGGGGCAGG CCCATTATTC 45663 .......... .......... .......... .......... .......... .......... 249 ACTTTGTTTT AAACCATGCT CCAAGGGCTA GGGGGATTTC TCTGTTACAA AAAAAAAAGA 45723 .......... .......... .......... .......... .......... .......... 249 TTTCCTCTTT TTGGGTTGGG AAAATACATC ACCGGATTTT AGGCTAAATA AAGACTATGA 45783 .......... .......... .......... .......... .......... .......... 249 TCATTTGTGG GTACCAGTCA CACATGTCAG GATTATCAAC GGACATGCCT GTCTAGATTC 45843 .......... .......... .......... .......... .......... .......... 249 TGACTGCTCT TGTTTGGCAA AAATAATTAA AATAACGCTG TCAAGAACTC TGCTCTCAGA 45903 .......... .......... .......... .......... .......... .......... 249 TTCCTCTGAG GCACTCGCGA TGTGTAATAA GAGAGGTGTG TGGTCTGGAC ATATTATTCA 45963 .......... .......... .......... .......... .......... .......... 249 GTATTTTAAA TATATTCAAG ACTTCAATTA CAGATACCAG AACAAAGTAT AAATTTCGAA 46023 .......... .......... .......... .......... .......... .......... 249 TTCAGGTCCA ATATTCATTG TAACTTTGTT AGGTTGGGTA GGATGAAAGA CATTATTTTT 46083 .......... .......... .......... .......... .......... .......... 249 TCAAAAGAAA GAAAGACCTG CAAAGAATTC CTTTTCTTTT TTTTCACCAA AACAGTATTT 46143 .......... .......... .......... .......... .......... .......... 249 AATTATAATC TTCCAGTGAA TAAATCGATC TTTTTTTCCC ATCTCAAAAA AGACTGATTT 46203 .......... .......... .......... .......... .......... .......... 249 ATTCACTGGA AGATGATAGT TAAATTCTGG TTTGGTAAAA AGGAAATCTT TGCAGGTCCT 46263 .......... .......... .......... .......... .......... .......... 249 AGGTGCAGGT TTAACTTTTA AGTGTAGATA TCAGGAAAAA GGGAAGGACA ATAAACAGAG 46323 .......... .......... .......... .......... .......... .......... 249 AAAAAGAAAA AGAAAAAGAA ATAGAAATGC ATACAACAAC TATTAAAATT TACTACTACA 46383 .......... .......... .......... .......... .......... .......... 249 CCTCAATCAC AAGCAAATTG GGGGATCAGA CAAGCTACCA TGTATACTCA CGTATATACT 46443 .......... .......... .......... .......... .......... .......... 249 TATTTGCTAA TGGGTTGAGA ATGTATAGGA TGCTCTTTTA ATTGGAGGAA ATTACCTTGG 46503 .......... .......... .......... .......... .......... .......... 249 AGGCTAATAA GTACTTTGGC GATAATTGGT ACTTTTACAA TTCTTTTGTC CATGTTATTG 46563 .......... .......... .......... .......... .......... .......... 249 ACAGCCTCAT GTACAATATT CAAGGAAACC TACATTTACT TGAGTAGAAA TCAAACAAAG 46623 .......... .......... .......... .......... .......... .......... 249 TACTTGTAAG CTAAAATTAG TTGCTGTAAA TCTGTTGTAG CAGAAGTGGA GTCTCCAGTG 46683 .......... .......... .......... .......... .......... .......... 249 GATGATACAT GGGTAGGCTA TTATAGATGG GTCTGTATTG CACTCAATTG CTCATCTGCA 46743 .......... .......... .......... .......... .......... .......... 249 GTTGCCGCCT CTGATTGAGA AGTAAATACC AAATGGAACT TGAACATTTC TAGAATTTTA 46803 .......... .......... .......... .......... .......... .......... 249 CCAGCTTCCA GAATATGATC ATTCTTCACA CTTACTGTCA TATGCTTTTA GAGGGCTCAT 46863 .......... .......... .......... .......... .......... .......... 249 ATAAGTCTTG TCGATGATTT GGTTCCAAGC TTGCTGTCCG TGACACATAA TTTTCAGTAC 46923 .......... .......... .......... .......... .......... .......... 249 TTAACAAAAC AACAAATTGG CTTGGTTAAA GATACATCTA GATCATATTT AAGGATTCAA 46983 .......... .......... .......... .......... .......... .......... 249 CTGCGATCAT AGCACCTTTG TAATACTTCT GTGCATTCTT TTGAGCAAGT GGATTTACTT 47043 .......... .......... .......... .......... .......... .......... 249 TTTCTTATGC AGGTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 47103 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 297 AAAGTTCCAG ATGCTTTAAA GGTCCTCTTC TAGACTTCTA CCAGCATAAA TTTCCATGTA 47163 |||||||||| |||||||||| | AAAGTTCCAG ATGCTTTAAA G......... .......... .......... .......... 318 CCATCTGACT TCAGATTATA TAACTTGTTT CCTGCAACTT CAGACCTCTA CAGGAGATGA 47223 ||||||| |||||||||| .......... .......... .......... .......... ...ACCTCTA CAGGAGATGA 335 AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 47283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 395 TGATCTTGTA TGTCGATACA TATCATCTGG TTTCTTTTAT CTGCTTAAAC AACTTTTCTG 47343 ||||||| TGATCTT... .......... .......... .......... .......... .......... 402 TGGGAAAATC CTGGCGCTTC CTTTTATGTT TGATGCGTTT TCAATAGGTT ATCTACACTG 47403 ||| |||||||||| .......... .......... .......... .......... .......GTT ATCTACACTG 415 ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATGGTA 47463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATG... 472 AGACATAATT TTGTGTTCAT ACCAGCCTAA TGAGAAAACC TTTTATTGCC AAATTACATA 47523 .......... .......... .......... .......... .......... .......... 472 AAAATTAAGA AAAAACAGTT CTAATAGATA TAATACACAT GAACCCATGG AATCCATTCT 47583 .......... .......... .......... .......... .......... .......... 472 GTAAATTCTA TCTCATATAG CATATCCTAT TATTGTAGCT TATGTTTATT ATCTCTGTTA 47643 .......... .......... .......... .......... .......... .......... 472 ACTTTGAATT GATGCTGATG CAATGAGGTA AGTTCTCTTT CTTGGTTATG GTGATAGCTG 47703 .......... .......... .......... .......... .......... .......... 472 TTAGTGTACT TCAGTCTTTA GCTTCTTGAA TTATTATATG AAGGAGTAAG TTGTCTTGTT 47763 .......... .......... .......... .......... .......... .......... 472 TACTGAAATA TTTGGATGAT GATCTTTTCT TTCATCACTT CGGGTCACCA TAAAGCATAA 47823 .......... .......... .......... .......... .......... .......... 472 ACCGCCAGTA GCAAAATTCC TCTTCAACAC AAAACCATTC TTTTTTGTTG AAATCATTTC 47883 .......... .......... .......... .......... .......... .......... 472 ATCAAACATG AAAACTTCAT ACATCTTACT TTTGTGACTC CTATTTGTAA GGTAATAACT 47943 .......... .......... .......... .......... .......... .......... 472 GATAGCTTTT GAAACTATAC TGATTCTTGA TGACACTTTA TCTCTATCAT GGATGCTTCC 48003 .......... .......... .......... .......... .......... .......... 472 CTGGATTGCA ATCTGAAATA TAAATGCAAG TTATATTTAT CAAAAGTAAT TAAAGCTGCA 48063 .......... .......... .......... .......... .......... .......... 472 TTTATCATTG CAAATAATTT TACAGAAAAT ATTTGCTGTG AAGATGAGGA GAAAATAACT 48123 .......... .......... .......... .......... .......... .......... 472 TGTATTGGGC TTTTTAAGAG CTTATGATAG ATAAACCTTT TTCTTGTTTT CTCTTTCTAT 48183 .......... .......... .......... .......... .......... .......... 472 GTATTATTTT AAAAATAAAG ATATGAACAA AAAAGGCCTT TATTTGGAAA AATTGGGAAT 48243 .......... .......... .......... .......... .......... .......... 472 GCTTTTAATT CCTGTTGCAG TATAGTAATC TTTGTTTAGC AGCTGTAGGA TTCCTAAAGC 48303 .......... .......... .......... .......... .......... .......... 472 ACCTTATAGT TTTTTTTAAT TTTTGGGTAA TACCACTCTC AATTAGGAGT ATCTATAGTT 48363 .......... .......... .......... .......... .......... .......... 472 CTGTTTGATT TAGTTTTAAC CTAAAAGGAA ACCAACAAAC TATGTTGGTT TGATAAATAA 48423 .......... .......... .......... .......... .......... .......... 472 ACAAACCAAA CTAAATCAAA TGTTTTTTTT TCAGTTTTTT TTCTTCGATT TTTTAGTCAC 48483 .......... .......... .......... .......... .......... .......... 472 GTGAAACACA AATTCAATTC ACAGCAAAAG GTAAAATCTC TCAAATGTCA ATACATGTTT 48543 .......... .......... .......... .......... .......... .......... 472 AGAAATAATC AAGCAGATAG ATTAACTTAT CATCTATTGA AACATCCACA TATGGGAAGT 48603 .......... .......... .......... .......... .......... .......... 472 TCACCTTGAG ACATGATAAT TATCCACTTC CAAAACTAAT AAAACAAATA TACATCCATC 48663 .......... .......... .......... .......... .......... .......... 472 TATGCTGCCA AAATTAATTA AACTTAATGA TTTAAAAATA ATATACAAAT CACGCCTAAA 48723 .......... .......... .......... .......... .......... .......... 472 TGACTTCAAT ATATGTGAAT AGAAAATTCA AGCAAGCATC ACGAACATGT TAAGACAAAT 48783 .......... .......... .......... .......... .......... .......... 472 TTAAAATTTT TTTGTTATTA AAACTATATA AAGTTCTAAA AGAATATCTA CCAGATATTT 48843 .......... .......... .......... .......... .......... .......... 472 ATGTCTGTAG AATTATACAA AATCCAATTG ATACAAGTCA ATGAACAAGT TTTTTCAGTC 48903 .......... .......... .......... .......... .......... .......... 472 AGTTTGGTTT GGTTTTTTAG TAACACCTAA CTCTCTTGGA AGTTCTAATA CTGCAGTTTG 48963 .......... .......... .......... .......... .......... .......... 472 TATGTGTTTG AGAAAGGCTT CCAACAGTTG ATACCTTTAG CATGGCCTTA GTTATGAATG 49023 .......... .......... .......... .......... .......... .......... 472 TTTGTCAAAG TTTTGTTGGT GACATTTGTA CTTGTTTCTC TGTTGTTAAT TGTGTATCTC 49083 .......... .......... .......... .......... .......... .......... 472 CTCTTTTGCA TCAATGGTAT TTTATTTTCC ATAAAAGGAT TAGAATTGGA TGAATTTCCT 49143 .......... .......... .......... .......... .......... .......... 472 TGTTAATAGA GCTTGAGCGA AGACAAAATG TTTAAAGACG AAGATAACAC AAAAATATTT 49203 .......... .......... .......... .......... .......... .......... 472 GCCTTTATGT GTTTAATAAA AATGAATGAC CACAAATGTA CAGAGTTAAT GGCTTTTTGA 49263 .......... .......... .......... .......... .......... .......... 472 ATACTTAAGT TTGGTTTTGG TCTTCTGAAA TGGCTGCAGG AGTTATCATG AATGACGAGA 49323 | |||||||||| |||||||||| .......... .......... .......... .........G AGTTATCATG AATGACGAGA 493 CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CTCAGGTTAT CTTCTATTTC ATATGATAAT 49383 |||||||||| |||||||||| |||||||||| |||| CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CTCAT..... .......... .......... 528 GTTTCTTCAC AACAGACAAG CTTCCATCGC TGTTTCTACA CTTGCTTATA TACATATTTC 49443 .......... .......... .......... .......... .......... .......... 528 ATTTTGAACT TTGTTGAGCT GCACCATTTC GTGTTCTTCG AGAATAATTT CTGTAATGCT 49503 .......... .......... .......... .......... .......... .......... 528 GGCTGAGTGT TTGACTTGAG AAGTTGAGAT ATTATTCTTA CTTTTGCAAG TAGTGTGACC 49563 .......... .......... .......... .......... .......... .......... 528 TTACCGGGAA AACTATTCAC CATGTCATTT TGCTGGATAT AGAGATTAGA GGCTGATGGC 49623 .......... .......... .......... .......... .......... .......... 528 TAAATATCTA GTTGAAGAAC AATTATTATT GATGGTCGCC ATCTCTTTCT TTTTATTGTT 49683 .......... .......... .......... .......... .......... .......... 528 TTTATTCCTT TCTTTTACCT GCTATTGTTT CTTTTAAGAC TGAACATGAT TGTAGTCATT 49743 .......... .......... .......... .......... .......... .......... 528 ATGATTACTA AGTATAGAAG CTTACAATCC CAAAAAGGTT TGATGGCCAC CATCTCTTTC 49803 .......... .......... .......... .......... .......... .......... 528 TTTTTATTGC TTTTATTCCT TTCATTTACC TACTATTGTT TCTTTTAAGA CTGAACATGA 49863 .......... .......... .......... .......... .......... .......... 528 TTGTAGTCAT TATGATTACT AAGTATAGAA GCTTACAATC CCAAAAAGGT TAATTCATCC 49923 .......... .......... .......... .......... .......... .......... 528 CAAGTGGGGA TACAGCGACA TTGGTGGAAT AATGCTAGTC ATGCAGGAAA ACCAGCCTGA 49983 .......... .......... .......... .......... .......... .......... 528 GTGGGTGTAA TAGGTTGAAG GCAATGGCGC TGAAGATTTG GGTGGGTGGG TAAGGGCATT 50043 .......... .......... .......... .......... .......... .......... 528 GTCAGAGAGA AAATTGGGAA ATAACACATC ATTTAGTTTT ATTTTATGCG GCACCACATG 50103 .......... .......... .......... .......... .......... .......... 528 TAGTACTGGA TGTTACTCAG GAATTAATTT TCAAATAGTA TCATGTTAGT AACTCCACAG 50163 .......... .......... .......... .......... .......... .......... 528 GGGAGTGTCT GTGTGACTAC TACTCTCAAA TCTTCAATAA CTAGGCCATT AGATTGCAAA 50223 .......... .......... .......... .......... .......... .......... 528 CTAAGTCATT TTGCAGTTAG TCAAACCAGG TGGTGATGAA CACTTCTAGG GTTCTCAATA 50283 .......... .......... .......... .......... .......... .......... 528 ACTGCTCTTA TGTATACTTG TTTGTCTGTG TATCCACAAG AATCTGAACC AACAACTTGC 50343 .......... .......... .......... .......... .......... .......... 528 AAGTTCAATA TATCAGCATA GAAGCCCAAT ACGACCTCAA ACAACAGAAA AGAAGAAACT 50403 .......... .......... .......... .......... .......... .......... 528 AGCTGTTGAA AAACAGTCTT CTAACTTTAA AAAAAAAAAA CCGGAGTAAC CAAATTACAA 50463 .......... .......... .......... .......... .......... .......... 528 CACTGAATAA TATATCCTAA AATATGATTA AGTTCAGTAC TCTTTCCAAT TGATGATGCT 50523 .......... .......... .......... .......... .......... .......... 528 AGCTCTTGAA CTTGGTTTTG TCGTTGTGAA TAATGAATAT AATGCTTTTC TAAACTAAAG 50583 .......... .......... .......... .......... .......... .......... 528 CCAGGTATAA ATTAGGTGTC TGTTCATTTT CCCTTTGCTC TTTTATGCTT GCATGCATTT 50643 .......... .......... .......... .......... .......... .......... 528 TATTGATAAT CTTTTATCAA AATGCAGTGT CTAATCTTGT TATTTCTCTT CTTTTATCTT 50703 .......... .......... .......... .......... .......... .......... 528 AGGCCAGAGC AGGAGCAGAT GTTGTCAGTC CAAGTGACAT GATGGATGGT CGTGTC 50759 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ..GCCAGAGC AGGAGCAGAT GTTGTCAGTC CAAGTGACAT GATGGATGGT CGTGTC 582 hqPGS_C08HBa0037O11.1+_SGN-E259625+ (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50759) ******************************************************************************** EST sequence 74 +strand 525 n (File: SGN-E257224+) 1 GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 61 CTGCCAATTA ATAGGAGACC ACGCCGTAAT CGTAGGTCGT CAGCAGCAAG AGCTGCATTC 121 CAGGAAACAA ATATAAGCCC TGCAAATCTT GTATATCCAC TATTTATTCA TGAGGGTGAA 181 GAGGACACAC CTATTGGAGC AATGCCTGGA TGTTATAGGC TTGGATGGAG GCATGGTCTT 241 GTTGAAGAGG TCGCAAAGGC AAGGGATGTT GGAGTCAACA GCATTGTGCT CTTCCCAAAA 301 GTTCCAGATG CTTTAAAGAC CTCTACAGGA GATGAAGCTT ACAATGACAA TGGATTAGTG 361 CCCCGAACAA TACGTTTGCT GAAAGACAAA TACCCTGATC TTGTTATCTA CACTGATGTT 421 GCTTTGGATC CATATTCATC TGATGGGCAT GATGGCATTG TGAGAGAAGA TGGAGTTATC 481 ATGAATGACG AGACTGTGCA TCAGTTGTGC AAACAGGCAG TTGCT Predicted gene structure (within gDNA segment 42904 to 49965): Exon 1 43504 43566 ( 63 n); cDNA 1 63 ( 63 n); score: 1.000 Intron 1 43567 44682 (1116 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 44683 44794 ( 112 n); cDNA 64 175 ( 112 n); score: 1.000 Intron 2 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 3 44867 44940 ( 74 n); cDNA 176 249 ( 74 n); score: 1.000 Intron 3 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 47056 47124 ( 69 n); cDNA 250 318 ( 69 n); score: 1.000 Intron 4 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 5 47207 47290 ( 84 n); cDNA 319 402 ( 84 n); score: 1.000 Intron 5 47291 47390 ( 100 n); Pd: 0.910 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 6 47391 47460 ( 70 n); cDNA 403 472 ( 70 n); score: 1.000 Intron 6 47461 49302 (1842 n); Pd: 0.957 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 7 49303 49355 ( 53 n); cDNA 473 525 ( 53 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E257224+ 1.000 525 1.000 C PGS_C08HBa0037O11.1+_SGN-E257224+ (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49355) Alignment (genomic DNA sequence = upper lines): GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 43563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTCCTC CGGTTCCACC AAAGCCGGCT GCACCTGACG GTACCCCTAT TGTGTCTTCA 60 CTGGTTAGTT TTCAGACATC ATTATTTTTA ATTATGCCAA TTTTGCCATT TTAGAGATGG 43623 ||| CTG....... .......... .......... .......... .......... .......... 63 CGAGGAAGTG TTAAGTGGAC CACCTTTTTC ATTAGTTTTG GAGGACTGTT TTGATTGCTT 43683 .......... .......... .......... .......... .......... .......... 63 ATTGGCTTTG GTTTTGGTGG CATATTCTCT AATCTGCTAA ACGTTATTTT CTAATCTCCG 43743 .......... .......... .......... .......... .......... .......... 63 TATCAAATTG TTACAGGAAT TAGATGTTTC ATGAGTCCAG AGTGTTTGAT TTGTTTGTAA 43803 .......... .......... .......... .......... .......... .......... 63 TTGAACTAGC CAGATGTAAG TTGGATACTA TGGTGTATTT TACATGTAAT ATACATTGTT 43863 .......... .......... .......... .......... .......... .......... 63 TCTGAATTAC AAGTAACTTA CCAACTGTCA AAATAGCAGA AGCAGTGGAG AACAAATTGC 43923 .......... .......... .......... .......... .......... .......... 63 TCTGACAACT TAGTCATAAT TGAGTACAGG CATCTCCATA AATGATAACT AACTTAGGAT 43983 .......... .......... .......... .......... .......... .......... 63 ATTAAAAATG GATTCATCTA CTGAATTGAG GCAAAAATTT CATAAAATGC TAGTACTGTA 44043 .......... .......... .......... .......... .......... .......... 63 TTGGAAGACT GCTTAACTAT TGTTGATGGG TGTTATTACA TTTGAATTCA AGATTCTTTC 44103 .......... .......... .......... .......... .......... .......... 63 AAACATTTAT CCAGAGTTCT AGTTACAGAA AGGCGAAAGC CTTATAAAGG AAAGTGATCA 44163 .......... .......... .......... .......... .......... .......... 63 TACTTTGAGA AAATTACACC GGACTATAAA ATCTTGAAAT TGACAGATAA GGTCTAACGA 44223 .......... .......... .......... .......... .......... .......... 63 CAACTTCTTT GAACATCTTT GACTATTCTT ATCTGGATGG AGGATGCTGA ATGTTGATGC 44283 .......... .......... .......... .......... .......... .......... 63 GATACTTGCA AATTACATGA TATTTACTTG TAGTGTATTT CTGGTATTTT TAGAACATTG 44343 .......... .......... .......... .......... .......... .......... 63 AGGGTCCTTA TTCCATTTAC ACAAGATGAT CAGCGATCTT TGTGAGACAT CCCTATGATT 44403 .......... .......... .......... .......... .......... .......... 63 ACTTGACTCT GAAGTGGTGT AGTTAATATT TTATCCTTCA ACTTCTAGAA AAAAATATCC 44463 .......... .......... .......... .......... .......... .......... 63 TTCAACTTCT ACTCTTCTTG TAGGTTGTCA GTGGGTACTA CATTTATAAT TTTGTAAGTA 44523 .......... .......... .......... .......... .......... .......... 63 ATAGTGTTAA CTTGTTTAGT TTGTATAACT GATAGCATCT TGGTTGAATT GTTGGATGGT 44583 .......... .......... .......... .......... .......... .......... 63 ATGGTGATAA TGCTTTAATA TAGACTCAAC ACTGCATCAG AAGTTGATAG ATTGATTTGC 44643 .......... .......... .......... .......... .......... .......... 63 TATGTGCCTG TAGCTAATGA CTGGATGTTG CTTGTATAGC CAATTAATAG GAGACCACGC 44703 | |||||||||| |||||||||| .......... .......... .......... .........C CAATTAATAG GAGACCACGC 84 CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 44763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 144 AATCTTGTAT ATCCACTATT TATTCATGAG GGTGAGTACT TGTCTGAATT CCTCTCTGCT 44823 |||||||||| |||||||||| |||||||||| | AATCTTGTAT ATCCACTATT TATTCATGAG G......... .......... .......... 175 TATAACATGT ATCAATCTGT TCTTACGAAT CACACACTTG CAGGTGAAGA GGACACACCT 44883 ||||||| |||||||||| .......... .......... .......... .......... ...GTGAAGA GGACACACCT 192 ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAGGTC 44943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAG... 249 GGTGAGCTAT CCCTAGGATT CTTTGTCCTC TATAATGTCT TTTTTTAGAT CAGAATTTCA 45003 .......... .......... .......... .......... .......... .......... 249 GCATTTTGGT TCCTTAATTC AATTCTTCTT TGTCTAATTG ATCTTGTCAT ATAATCCTGC 45063 .......... .......... .......... .......... .......... .......... 249 TCCCTGTTCT TCCAAATTTT AGCTGGTGAT AATGAAGTAT CTGATGCATT TGATCACATA 45123 .......... .......... .......... .......... .......... .......... 249 AATAGCGAGC AATGTTCTTT ATCAAGTATC TAATGTTTAT GATAGGTGGA AGGTAGTTTC 45183 .......... .......... .......... .......... .......... .......... 249 GTTTAAGGCA GCCTGACCAC CGTAACTCTA CTTTGGGCCA TAAGTAGCTC TCTCCTTGAT 45243 .......... .......... .......... .......... .......... .......... 249 TAATTTTGAT ATGTTGACCT TGTAGCCCTG CTTTGTATTG GTTCACAGTG TATCTAATTG 45303 .......... .......... .......... .......... .......... .......... 249 ATGATGATGT GCTGCATTGG TCTTGTTGCT ATGATTTTGC TATATCTTGA GGGTGATTTG 45363 .......... .......... .......... .......... .......... .......... 249 CTTTCCATTG TCCATTTGTT TTCCATTATG TATGTTATTA TGACCAGACC AGTATCATTA 45423 .......... .......... .......... .......... .......... .......... 249 CAATATTGCT AGTATTAATG ATAAAAACCA TTATCATTAC ATTATTGCTG GTATCAATGA 45483 .......... .......... .......... .......... .......... .......... 249 TCAAAGTTTT ACCATAGCAT TAGGGGTAAA GTGTCTTTCT TGTTTGGTGA TCAGTCAACG 45543 .......... .......... .......... .......... .......... .......... 249 AAGTCATTCT GGATAAACAA AACGCTATCC TCGTAATTTG TTGTAGGTTT TTATTTTTCA 45603 .......... .......... .......... .......... .......... .......... 249 ATTTTCGATG TTGTATTTAT TGGAGAGGGG TAGAGGGGCA GAGGGGCAGG CCCATTATTC 45663 .......... .......... .......... .......... .......... .......... 249 ACTTTGTTTT AAACCATGCT CCAAGGGCTA GGGGGATTTC TCTGTTACAA AAAAAAAAGA 45723 .......... .......... .......... .......... .......... .......... 249 TTTCCTCTTT TTGGGTTGGG AAAATACATC ACCGGATTTT AGGCTAAATA AAGACTATGA 45783 .......... .......... .......... .......... .......... .......... 249 TCATTTGTGG GTACCAGTCA CACATGTCAG GATTATCAAC GGACATGCCT GTCTAGATTC 45843 .......... .......... .......... .......... .......... .......... 249 TGACTGCTCT TGTTTGGCAA AAATAATTAA AATAACGCTG TCAAGAACTC TGCTCTCAGA 45903 .......... .......... .......... .......... .......... .......... 249 TTCCTCTGAG GCACTCGCGA TGTGTAATAA GAGAGGTGTG TGGTCTGGAC ATATTATTCA 45963 .......... .......... .......... .......... .......... .......... 249 GTATTTTAAA TATATTCAAG ACTTCAATTA CAGATACCAG AACAAAGTAT AAATTTCGAA 46023 .......... .......... .......... .......... .......... .......... 249 TTCAGGTCCA ATATTCATTG TAACTTTGTT AGGTTGGGTA GGATGAAAGA CATTATTTTT 46083 .......... .......... .......... .......... .......... .......... 249 TCAAAAGAAA GAAAGACCTG CAAAGAATTC CTTTTCTTTT TTTTCACCAA AACAGTATTT 46143 .......... .......... .......... .......... .......... .......... 249 AATTATAATC TTCCAGTGAA TAAATCGATC TTTTTTTCCC ATCTCAAAAA AGACTGATTT 46203 .......... .......... .......... .......... .......... .......... 249 ATTCACTGGA AGATGATAGT TAAATTCTGG TTTGGTAAAA AGGAAATCTT TGCAGGTCCT 46263 .......... .......... .......... .......... .......... .......... 249 AGGTGCAGGT TTAACTTTTA AGTGTAGATA TCAGGAAAAA GGGAAGGACA ATAAACAGAG 46323 .......... .......... .......... .......... .......... .......... 249 AAAAAGAAAA AGAAAAAGAA ATAGAAATGC ATACAACAAC TATTAAAATT TACTACTACA 46383 .......... .......... .......... .......... .......... .......... 249 CCTCAATCAC AAGCAAATTG GGGGATCAGA CAAGCTACCA TGTATACTCA CGTATATACT 46443 .......... .......... .......... .......... .......... .......... 249 TATTTGCTAA TGGGTTGAGA ATGTATAGGA TGCTCTTTTA ATTGGAGGAA ATTACCTTGG 46503 .......... .......... .......... .......... .......... .......... 249 AGGCTAATAA GTACTTTGGC GATAATTGGT ACTTTTACAA TTCTTTTGTC CATGTTATTG 46563 .......... .......... .......... .......... .......... .......... 249 ACAGCCTCAT GTACAATATT CAAGGAAACC TACATTTACT TGAGTAGAAA TCAAACAAAG 46623 .......... .......... .......... .......... .......... .......... 249 TACTTGTAAG CTAAAATTAG TTGCTGTAAA TCTGTTGTAG CAGAAGTGGA GTCTCCAGTG 46683 .......... .......... .......... .......... .......... .......... 249 GATGATACAT GGGTAGGCTA TTATAGATGG GTCTGTATTG CACTCAATTG CTCATCTGCA 46743 .......... .......... .......... .......... .......... .......... 249 GTTGCCGCCT CTGATTGAGA AGTAAATACC AAATGGAACT TGAACATTTC TAGAATTTTA 46803 .......... .......... .......... .......... .......... .......... 249 CCAGCTTCCA GAATATGATC ATTCTTCACA CTTACTGTCA TATGCTTTTA GAGGGCTCAT 46863 .......... .......... .......... .......... .......... .......... 249 ATAAGTCTTG TCGATGATTT GGTTCCAAGC TTGCTGTCCG TGACACATAA TTTTCAGTAC 46923 .......... .......... .......... .......... .......... .......... 249 TTAACAAAAC AACAAATTGG CTTGGTTAAA GATACATCTA GATCATATTT AAGGATTCAA 46983 .......... .......... .......... .......... .......... .......... 249 CTGCGATCAT AGCACCTTTG TAATACTTCT GTGCATTCTT TTGAGCAAGT GGATTTACTT 47043 .......... .......... .......... .......... .......... .......... 249 TTTCTTATGC AGGTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 47103 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 297 AAAGTTCCAG ATGCTTTAAA GGTCCTCTTC TAGACTTCTA CCAGCATAAA TTTCCATGTA 47163 |||||||||| |||||||||| | AAAGTTCCAG ATGCTTTAAA G......... .......... .......... .......... 318 CCATCTGACT TCAGATTATA TAACTTGTTT CCTGCAACTT CAGACCTCTA CAGGAGATGA 47223 ||||||| |||||||||| .......... .......... .......... .......... ...ACCTCTA CAGGAGATGA 335 AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 47283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 395 TGATCTTGTA TGTCGATACA TATCATCTGG TTTCTTTTAT CTGCTTAAAC AACTTTTCTG 47343 ||||||| TGATCTT... .......... .......... .......... .......... .......... 402 TGGGAAAATC CTGGCGCTTC CTTTTATGTT TGATGCGTTT TCAATAGGTT ATCTACACTG 47403 ||| |||||||||| .......... .......... .......... .......... .......GTT ATCTACACTG 415 ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATGGTA 47463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATG... 472 AGACATAATT TTGTGTTCAT ACCAGCCTAA TGAGAAAACC TTTTATTGCC AAATTACATA 47523 .......... .......... .......... .......... .......... .......... 472 AAAATTAAGA AAAAACAGTT CTAATAGATA TAATACACAT GAACCCATGG AATCCATTCT 47583 .......... .......... .......... .......... .......... .......... 472 GTAAATTCTA TCTCATATAG CATATCCTAT TATTGTAGCT TATGTTTATT ATCTCTGTTA 47643 .......... .......... .......... .......... .......... .......... 472 ACTTTGAATT GATGCTGATG CAATGAGGTA AGTTCTCTTT CTTGGTTATG GTGATAGCTG 47703 .......... .......... .......... .......... .......... .......... 472 TTAGTGTACT TCAGTCTTTA GCTTCTTGAA TTATTATATG AAGGAGTAAG TTGTCTTGTT 47763 .......... .......... .......... .......... .......... .......... 472 TACTGAAATA TTTGGATGAT GATCTTTTCT TTCATCACTT CGGGTCACCA TAAAGCATAA 47823 .......... .......... .......... .......... .......... .......... 472 ACCGCCAGTA GCAAAATTCC TCTTCAACAC AAAACCATTC TTTTTTGTTG AAATCATTTC 47883 .......... .......... .......... .......... .......... .......... 472 ATCAAACATG AAAACTTCAT ACATCTTACT TTTGTGACTC CTATTTGTAA GGTAATAACT 47943 .......... .......... .......... .......... .......... .......... 472 GATAGCTTTT GAAACTATAC TGATTCTTGA TGACACTTTA TCTCTATCAT GGATGCTTCC 48003 .......... .......... .......... .......... .......... .......... 472 CTGGATTGCA ATCTGAAATA TAAATGCAAG TTATATTTAT CAAAAGTAAT TAAAGCTGCA 48063 .......... .......... .......... .......... .......... .......... 472 TTTATCATTG CAAATAATTT TACAGAAAAT ATTTGCTGTG AAGATGAGGA GAAAATAACT 48123 .......... .......... .......... .......... .......... .......... 472 TGTATTGGGC TTTTTAAGAG CTTATGATAG ATAAACCTTT TTCTTGTTTT CTCTTTCTAT 48183 .......... .......... .......... .......... .......... .......... 472 GTATTATTTT AAAAATAAAG ATATGAACAA AAAAGGCCTT TATTTGGAAA AATTGGGAAT 48243 .......... .......... .......... .......... .......... .......... 472 GCTTTTAATT CCTGTTGCAG TATAGTAATC TTTGTTTAGC AGCTGTAGGA TTCCTAAAGC 48303 .......... .......... .......... .......... .......... .......... 472 ACCTTATAGT TTTTTTTAAT TTTTGGGTAA TACCACTCTC AATTAGGAGT ATCTATAGTT 48363 .......... .......... .......... .......... .......... .......... 472 CTGTTTGATT TAGTTTTAAC CTAAAAGGAA ACCAACAAAC TATGTTGGTT TGATAAATAA 48423 .......... .......... .......... .......... .......... .......... 472 ACAAACCAAA CTAAATCAAA TGTTTTTTTT TCAGTTTTTT TTCTTCGATT TTTTAGTCAC 48483 .......... .......... .......... .......... .......... .......... 472 GTGAAACACA AATTCAATTC ACAGCAAAAG GTAAAATCTC TCAAATGTCA ATACATGTTT 48543 .......... .......... .......... .......... .......... .......... 472 AGAAATAATC AAGCAGATAG ATTAACTTAT CATCTATTGA AACATCCACA TATGGGAAGT 48603 .......... .......... .......... .......... .......... .......... 472 TCACCTTGAG ACATGATAAT TATCCACTTC CAAAACTAAT AAAACAAATA TACATCCATC 48663 .......... .......... .......... .......... .......... .......... 472 TATGCTGCCA AAATTAATTA AACTTAATGA TTTAAAAATA ATATACAAAT CACGCCTAAA 48723 .......... .......... .......... .......... .......... .......... 472 TGACTTCAAT ATATGTGAAT AGAAAATTCA AGCAAGCATC ACGAACATGT TAAGACAAAT 48783 .......... .......... .......... .......... .......... .......... 472 TTAAAATTTT TTTGTTATTA AAACTATATA AAGTTCTAAA AGAATATCTA CCAGATATTT 48843 .......... .......... .......... .......... .......... .......... 472 ATGTCTGTAG AATTATACAA AATCCAATTG ATACAAGTCA ATGAACAAGT TTTTTCAGTC 48903 .......... .......... .......... .......... .......... .......... 472 AGTTTGGTTT GGTTTTTTAG TAACACCTAA CTCTCTTGGA AGTTCTAATA CTGCAGTTTG 48963 .......... .......... .......... .......... .......... .......... 472 TATGTGTTTG AGAAAGGCTT CCAACAGTTG ATACCTTTAG CATGGCCTTA GTTATGAATG 49023 .......... .......... .......... .......... .......... .......... 472 TTTGTCAAAG TTTTGTTGGT GACATTTGTA CTTGTTTCTC TGTTGTTAAT TGTGTATCTC 49083 .......... .......... .......... .......... .......... .......... 472 CTCTTTTGCA TCAATGGTAT TTTATTTTCC ATAAAAGGAT TAGAATTGGA TGAATTTCCT 49143 .......... .......... .......... .......... .......... .......... 472 TGTTAATAGA GCTTGAGCGA AGACAAAATG TTTAAAGACG AAGATAACAC AAAAATATTT 49203 .......... .......... .......... .......... .......... .......... 472 GCCTTTATGT GTTTAATAAA AATGAATGAC CACAAATGTA CAGAGTTAAT GGCTTTTTGA 49263 .......... .......... .......... .......... .......... .......... 472 ATACTTAAGT TTGGTTTTGG TCTTCTGAAA TGGCTGCAGG AGTTATCATG AATGACGAGA 49323 | |||||||||| |||||||||| .......... .......... .......... .........G AGTTATCATG AATGACGAGA 493 CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CT 49355 |||||||||| |||||||||| |||||||||| || CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CT 525 hqPGS_C08HBa0037O11.1+_SGN-E257224+ (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49355) ******************************************************************************** EST sequence 95 +strand 499 n (File: SGN-E284052+) 1 CCACGCCGTA ATCGTAGGTC GTCAGCAGCA AGAGCTGCAT TCCAGGAAAC AAATATAAGC 61 CCTGCAAATC TTGTATATCC ACTATTTATT CATGAGGGTG AAGAGGACAC ACCTATTGGA 121 GCAATGCCTG GATGTTATAG GCTTGGATGG AGGCATGGTC TTGTTGAAGA GGTCGCAAAG 181 GCAAGGGATG TTGGAGTCAA CAGCATTGTG CTCTTCCCAA AAGTTCCAGA TGCTTTAAAG 241 ACCTCTACAG GAGATGAAGC TTACAATGAC AATGGATTAG TGCCCCGAAC AATACGTTTG 301 CTGAAAGACA AATACCCTGA TCTTGTTATC TACACTGATG TTGCTTTGGA TCCATATTCA 361 TCTGATGGGC ATGATGGCAT TGTGAGAGAA GATGGAGTTA TCATGAATGA CGAGACTGTG 421 CATCATTTGT GCAAACAGGC AGTTGCTCAA GCCAGAGCAG GAGCAGATGT TGTCAGTCCA 481 AGTGACATGA TGGATGGTC Predicted gene structure (within gDNA segment 44098 to 51364): Exon 1 44698 44794 ( 97 n); cDNA 1 97 ( 97 n); score: 1.000 Intron 1 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 2 44867 44940 ( 74 n); cDNA 98 171 ( 74 n); score: 1.000 Intron 2 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 47056 47124 ( 69 n); cDNA 172 240 ( 69 n); score: 1.000 Intron 3 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 47207 47290 ( 84 n); cDNA 241 324 ( 84 n); score: 1.000 Intron 4 47291 47390 ( 100 n); Pd: 0.910 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 47391 47460 ( 70 n); cDNA 325 394 ( 70 n); score: 1.000 Intron 5 47461 49302 (1842 n); Pd: 0.957 (s: 1.00), Pa: 0.984 (s: 0.98) Exon 6 49303 49358 ( 56 n); cDNA 395 450 ( 56 n); score: 0.964 Intron 6 49359 50705 (1347 n); Pd: 0.995 (s: 0.96), Pa: 1.000 (s: 1.00) Exon 7 50706 50754 ( 49 n); cDNA 451 499 ( 49 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E284052+ 0.996 499 1.000 C PGS_C08HBa0037O11.1+_SGN-E284052+ (44698 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50754) Alignment (genomic DNA sequence = upper lines): CCACGCCGTA ATCGTAGGTC GTCAGCAGCA AGAGCTGCAT TCCAGGAAAC AAATATAAGC 44757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGCCGTA ATCGTAGGTC GTCAGCAGCA AGAGCTGCAT TCCAGGAAAC AAATATAAGC 60 CCTGCAAATC TTGTATATCC ACTATTTATT CATGAGGGTG AGTACTTGTC TGAATTCCTC 44817 |||||||||| |||||||||| |||||||||| ||||||| CCTGCAAATC TTGTATATCC ACTATTTATT CATGAGG... .......... .......... 97 TCTGCTTATA ACATGTATCA ATCTGTTCTT ACGAATCACA CACTTGCAGG TGAAGAGGAC 44877 | |||||||||| .......... .......... .......... .......... .........G TGAAGAGGAC 108 ACACCTATTG GAGCAATGCC TGGATGTTAT AGGCTTGGAT GGAGGCATGG TCTTGTTGAA 44937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACCTATTG GAGCAATGCC TGGATGTTAT AGGCTTGGAT GGAGGCATGG TCTTGTTGAA 168 GAGGTCGGTG AGCTATCCCT AGGATTCTTT GTCCTCTATA ATGTCTTTTT TTAGATCAGA 44997 ||| GAG....... .......... .......... .......... .......... .......... 171 ATTTCAGCAT TTTGGTTCCT TAATTCAATT CTTCTTTGTC TAATTGATCT TGTCATATAA 45057 .......... .......... .......... .......... .......... .......... 171 TCCTGCTCCC TGTTCTTCCA AATTTTAGCT GGTGATAATG AAGTATCTGA TGCATTTGAT 45117 .......... .......... .......... .......... .......... .......... 171 CACATAAATA GCGAGCAATG TTCTTTATCA AGTATCTAAT GTTTATGATA GGTGGAAGGT 45177 .......... .......... .......... .......... .......... .......... 171 AGTTTCGTTT AAGGCAGCCT GACCACCGTA ACTCTACTTT GGGCCATAAG TAGCTCTCTC 45237 .......... .......... .......... .......... .......... .......... 171 CTTGATTAAT TTTGATATGT TGACCTTGTA GCCCTGCTTT GTATTGGTTC ACAGTGTATC 45297 .......... .......... .......... .......... .......... .......... 171 TAATTGATGA TGATGTGCTG CATTGGTCTT GTTGCTATGA TTTTGCTATA TCTTGAGGGT 45357 .......... .......... .......... .......... .......... .......... 171 GATTTGCTTT CCATTGTCCA TTTGTTTTCC ATTATGTATG TTATTATGAC CAGACCAGTA 45417 .......... .......... .......... .......... .......... .......... 171 TCATTACAAT ATTGCTAGTA TTAATGATAA AAACCATTAT CATTACATTA TTGCTGGTAT 45477 .......... .......... .......... .......... .......... .......... 171 CAATGATCAA AGTTTTACCA TAGCATTAGG GGTAAAGTGT CTTTCTTGTT TGGTGATCAG 45537 .......... .......... .......... .......... .......... .......... 171 TCAACGAAGT CATTCTGGAT AAACAAAACG CTATCCTCGT AATTTGTTGT AGGTTTTTAT 45597 .......... .......... .......... .......... .......... .......... 171 TTTTCAATTT TCGATGTTGT ATTTATTGGA GAGGGGTAGA GGGGCAGAGG GGCAGGCCCA 45657 .......... .......... .......... .......... .......... .......... 171 TTATTCACTT TGTTTTAAAC CATGCTCCAA GGGCTAGGGG GATTTCTCTG TTACAAAAAA 45717 .......... .......... .......... .......... .......... .......... 171 AAAAGATTTC CTCTTTTTGG GTTGGGAAAA TACATCACCG GATTTTAGGC TAAATAAAGA 45777 .......... .......... .......... .......... .......... .......... 171 CTATGATCAT TTGTGGGTAC CAGTCACACA TGTCAGGATT ATCAACGGAC ATGCCTGTCT 45837 .......... .......... .......... .......... .......... .......... 171 AGATTCTGAC TGCTCTTGTT TGGCAAAAAT AATTAAAATA ACGCTGTCAA GAACTCTGCT 45897 .......... .......... .......... .......... .......... .......... 171 CTCAGATTCC TCTGAGGCAC TCGCGATGTG TAATAAGAGA GGTGTGTGGT CTGGACATAT 45957 .......... .......... .......... .......... .......... .......... 171 TATTCAGTAT TTTAAATATA TTCAAGACTT CAATTACAGA TACCAGAACA AAGTATAAAT 46017 .......... .......... .......... .......... .......... .......... 171 TTCGAATTCA GGTCCAATAT TCATTGTAAC TTTGTTAGGT TGGGTAGGAT GAAAGACATT 46077 .......... .......... .......... .......... .......... .......... 171 ATTTTTTCAA AAGAAAGAAA GACCTGCAAA GAATTCCTTT TCTTTTTTTT CACCAAAACA 46137 .......... .......... .......... .......... .......... .......... 171 GTATTTAATT ATAATCTTCC AGTGAATAAA TCGATCTTTT TTTCCCATCT CAAAAAAGAC 46197 .......... .......... .......... .......... .......... .......... 171 TGATTTATTC ACTGGAAGAT GATAGTTAAA TTCTGGTTTG GTAAAAAGGA AATCTTTGCA 46257 .......... .......... .......... .......... .......... .......... 171 GGTCCTAGGT GCAGGTTTAA CTTTTAAGTG TAGATATCAG GAAAAAGGGA AGGACAATAA 46317 .......... .......... .......... .......... .......... .......... 171 ACAGAGAAAA AGAAAAAGAA AAAGAAATAG AAATGCATAC AACAACTATT AAAATTTACT 46377 .......... .......... .......... .......... .......... .......... 171 ACTACACCTC AATCACAAGC AAATTGGGGG ATCAGACAAG CTACCATGTA TACTCACGTA 46437 .......... .......... .......... .......... .......... .......... 171 TATACTTATT TGCTAATGGG TTGAGAATGT ATAGGATGCT CTTTTAATTG GAGGAAATTA 46497 .......... .......... .......... .......... .......... .......... 171 CCTTGGAGGC TAATAAGTAC TTTGGCGATA ATTGGTACTT TTACAATTCT TTTGTCCATG 46557 .......... .......... .......... .......... .......... .......... 171 TTATTGACAG CCTCATGTAC AATATTCAAG GAAACCTACA TTTACTTGAG TAGAAATCAA 46617 .......... .......... .......... .......... .......... .......... 171 ACAAAGTACT TGTAAGCTAA AATTAGTTGC TGTAAATCTG TTGTAGCAGA AGTGGAGTCT 46677 .......... .......... .......... .......... .......... .......... 171 CCAGTGGATG ATACATGGGT AGGCTATTAT AGATGGGTCT GTATTGCACT CAATTGCTCA 46737 .......... .......... .......... .......... .......... .......... 171 TCTGCAGTTG CCGCCTCTGA TTGAGAAGTA AATACCAAAT GGAACTTGAA CATTTCTAGA 46797 .......... .......... .......... .......... .......... .......... 171 ATTTTACCAG CTTCCAGAAT ATGATCATTC TTCACACTTA CTGTCATATG CTTTTAGAGG 46857 .......... .......... .......... .......... .......... .......... 171 GCTCATATAA GTCTTGTCGA TGATTTGGTT CCAAGCTTGC TGTCCGTGAC ACATAATTTT 46917 .......... .......... .......... .......... .......... .......... 171 CAGTACTTAA CAAAACAACA AATTGGCTTG GTTAAAGATA CATCTAGATC ATATTTAAGG 46977 .......... .......... .......... .......... .......... .......... 171 ATTCAACTGC GATCATAGCA CCTTTGTAAT ACTTCTGTGC ATTCTTTTGA GCAAGTGGAT 47037 .......... .......... .......... .......... .......... .......... 171 TTACTTTTTC TTATGCAGGT CGCAAAGGCA AGGGATGTTG GAGTCAACAG CATTGTGCTC 47097 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT CGCAAAGGCA AGGGATGTTG GAGTCAACAG CATTGTGCTC 213 TTCCCAAAAG TTCCAGATGC TTTAAAGGTC CTCTTCTAGA CTTCTACCAG CATAAATTTC 47157 |||||||||| |||||||||| ||||||| TTCCCAAAAG TTCCAGATGC TTTAAAG... .......... .......... .......... 240 CATGTACCAT CTGACTTCAG ATTATATAAC TTGTTTCCTG CAACTTCAGA CCTCTACAGG 47217 | |||||||||| .......... .......... .......... .......... .........A CCTCTACAGG 251 AGATGAAGCT TACAATGACA ATGGATTAGT GCCCCGAACA ATACGTTTGC TGAAAGACAA 47277 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGAAGCT TACAATGACA ATGGATTAGT GCCCCGAACA ATACGTTTGC TGAAAGACAA 311 ATACCCTGAT CTTGTATGTC GATACATATC ATCTGGTTTC TTTTATCTGC TTAAACAACT 47337 |||||||||| ||| ATACCCTGAT CTT....... .......... .......... .......... .......... 324 TTTCTGTGGG AAAATCCTGG CGCTTCCTTT TATGTTTGAT GCGTTTTCAA TAGGTTATCT 47397 ||||||| .......... .......... .......... .......... .......... ...GTTATCT 331 ACACTGATGT TGCTTTGGAT CCATATTCAT CTGATGGGCA TGATGGCATT GTGAGAGAAG 47457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTGATGT TGCTTTGGAT CCATATTCAT CTGATGGGCA TGATGGCATT GTGAGAGAAG 391 ATGGTAAGAC ATAATTTTGT GTTCATACCA GCCTAATGAG AAAACCTTTT ATTGCCAAAT 47517 ||| ATG....... .......... .......... .......... .......... .......... 394 TACATAAAAA TTAAGAAAAA ACAGTTCTAA TAGATATAAT ACACATGAAC CCATGGAATC 47577 .......... .......... .......... .......... .......... .......... 394 CATTCTGTAA ATTCTATCTC ATATAGCATA TCCTATTATT GTAGCTTATG TTTATTATCT 47637 .......... .......... .......... .......... .......... .......... 394 CTGTTAACTT TGAATTGATG CTGATGCAAT GAGGTAAGTT CTCTTTCTTG GTTATGGTGA 47697 .......... .......... .......... .......... .......... .......... 394 TAGCTGTTAG TGTACTTCAG TCTTTAGCTT CTTGAATTAT TATATGAAGG AGTAAGTTGT 47757 .......... .......... .......... .......... .......... .......... 394 CTTGTTTACT GAAATATTTG GATGATGATC TTTTCTTTCA TCACTTCGGG TCACCATAAA 47817 .......... .......... .......... .......... .......... .......... 394 GCATAAACCG CCAGTAGCAA AATTCCTCTT CAACACAAAA CCATTCTTTT TTGTTGAAAT 47877 .......... .......... .......... .......... .......... .......... 394 CATTTCATCA AACATGAAAA CTTCATACAT CTTACTTTTG TGACTCCTAT TTGTAAGGTA 47937 .......... .......... .......... .......... .......... .......... 394 ATAACTGATA GCTTTTGAAA CTATACTGAT TCTTGATGAC ACTTTATCTC TATCATGGAT 47997 .......... .......... .......... .......... .......... .......... 394 GCTTCCCTGG ATTGCAATCT GAAATATAAA TGCAAGTTAT ATTTATCAAA AGTAATTAAA 48057 .......... .......... .......... .......... .......... .......... 394 GCTGCATTTA TCATTGCAAA TAATTTTACA GAAAATATTT GCTGTGAAGA TGAGGAGAAA 48117 .......... .......... .......... .......... .......... .......... 394 ATAACTTGTA TTGGGCTTTT TAAGAGCTTA TGATAGATAA ACCTTTTTCT TGTTTTCTCT 48177 .......... .......... .......... .......... .......... .......... 394 TTCTATGTAT TATTTTAAAA ATAAAGATAT GAACAAAAAA GGCCTTTATT TGGAAAAATT 48237 .......... .......... .......... .......... .......... .......... 394 GGGAATGCTT TTAATTCCTG TTGCAGTATA GTAATCTTTG TTTAGCAGCT GTAGGATTCC 48297 .......... .......... .......... .......... .......... .......... 394 TAAAGCACCT TATAGTTTTT TTTAATTTTT GGGTAATACC ACTCTCAATT AGGAGTATCT 48357 .......... .......... .......... .......... .......... .......... 394 ATAGTTCTGT TTGATTTAGT TTTAACCTAA AAGGAAACCA ACAAACTATG TTGGTTTGAT 48417 .......... .......... .......... .......... .......... .......... 394 AAATAAACAA ACCAAACTAA ATCAAATGTT TTTTTTTCAG TTTTTTTTCT TCGATTTTTT 48477 .......... .......... .......... .......... .......... .......... 394 AGTCACGTGA AACACAAATT CAATTCACAG CAAAAGGTAA AATCTCTCAA ATGTCAATAC 48537 .......... .......... .......... .......... .......... .......... 394 ATGTTTAGAA ATAATCAAGC AGATAGATTA ACTTATCATC TATTGAAACA TCCACATATG 48597 .......... .......... .......... .......... .......... .......... 394 GGAAGTTCAC CTTGAGACAT GATAATTATC CACTTCCAAA ACTAATAAAA CAAATATACA 48657 .......... .......... .......... .......... .......... .......... 394 TCCATCTATG CTGCCAAAAT TAATTAAACT TAATGATTTA AAAATAATAT ACAAATCACG 48717 .......... .......... .......... .......... .......... .......... 394 CCTAAATGAC TTCAATATAT GTGAATAGAA AATTCAAGCA AGCATCACGA ACATGTTAAG 48777 .......... .......... .......... .......... .......... .......... 394 ACAAATTTAA AATTTTTTTG TTATTAAAAC TATATAAAGT TCTAAAAGAA TATCTACCAG 48837 .......... .......... .......... .......... .......... .......... 394 ATATTTATGT CTGTAGAATT ATACAAAATC CAATTGATAC AAGTCAATGA ACAAGTTTTT 48897 .......... .......... .......... .......... .......... .......... 394 TCAGTCAGTT TGGTTTGGTT TTTTAGTAAC ACCTAACTCT CTTGGAAGTT CTAATACTGC 48957 .......... .......... .......... .......... .......... .......... 394 AGTTTGTATG TGTTTGAGAA AGGCTTCCAA CAGTTGATAC CTTTAGCATG GCCTTAGTTA 49017 .......... .......... .......... .......... .......... .......... 394 TGAATGTTTG TCAAAGTTTT GTTGGTGACA TTTGTACTTG TTTCTCTGTT GTTAATTGTG 49077 .......... .......... .......... .......... .......... .......... 394 TATCTCCTCT TTTGCATCAA TGGTATTTTA TTTTCCATAA AAGGATTAGA ATTGGATGAA 49137 .......... .......... .......... .......... .......... .......... 394 TTTCCTTGTT AATAGAGCTT GAGCGAAGAC AAAATGTTTA AAGACGAAGA TAACACAAAA 49197 .......... .......... .......... .......... .......... .......... 394 ATATTTGCCT TTATGTGTTT AATAAAAATG AATGACCACA AATGTACAGA GTTAATGGCT 49257 .......... .......... .......... .......... .......... .......... 394 TTTTGAATAC TTAAGTTTGG TTTTGGTCTT CTGAAATGGC TGCAGGAGTT ATCATGAATG 49317 ||||| |||||||||| .......... .......... .......... .......... .....GAGTT ATCATGAATG 409 ACGAGACTGT GCATCAGTTG TGCAAACAGG CAGTTGCTCA GGTTATCTTC TATTTCATAT 49377 |||||||||| |||||| ||| |||||||||| |||||||||| ACGAGACTGT GCATCATTTG TGCAAACAGG CAGTTGCTCA A......... .......... 450 GATAATGTTT CTTCACAACA GACAAGCTTC CATCGCTGTT TCTACACTTG CTTATATACA 49437 .......... .......... .......... .......... .......... .......... 450 TATTTCATTT TGAACTTTGT TGAGCTGCAC CATTTCGTGT TCTTCGAGAA TAATTTCTGT 49497 .......... .......... .......... .......... .......... .......... 450 AATGCTGGCT GAGTGTTTGA CTTGAGAAGT TGAGATATTA TTCTTACTTT TGCAAGTAGT 49557 .......... .......... .......... .......... .......... .......... 450 GTGACCTTAC CGGGAAAACT ATTCACCATG TCATTTTGCT GGATATAGAG ATTAGAGGCT 49617 .......... .......... .......... .......... .......... .......... 450 GATGGCTAAA TATCTAGTTG AAGAACAATT ATTATTGATG GTCGCCATCT CTTTCTTTTT 49677 .......... .......... .......... .......... .......... .......... 450 ATTGTTTTTA TTCCTTTCTT TTACCTGCTA TTGTTTCTTT TAAGACTGAA CATGATTGTA 49737 .......... .......... .......... .......... .......... .......... 450 GTCATTATGA TTACTAAGTA TAGAAGCTTA CAATCCCAAA AAGGTTTGAT GGCCACCATC 49797 .......... .......... .......... .......... .......... .......... 450 TCTTTCTTTT TATTGCTTTT ATTCCTTTCA TTTACCTACT ATTGTTTCTT TTAAGACTGA 49857 .......... .......... .......... .......... .......... .......... 450 ACATGATTGT AGTCATTATG ATTACTAAGT ATAGAAGCTT ACAATCCCAA AAAGGTTAAT 49917 .......... .......... .......... .......... .......... .......... 450 TCATCCCAAG TGGGGATACA GCGACATTGG TGGAATAATG CTAGTCATGC AGGAAAACCA 49977 .......... .......... .......... .......... .......... .......... 450 GCCTGAGTGG GTGTAATAGG TTGAAGGCAA TGGCGCTGAA GATTTGGGTG GGTGGGTAAG 50037 .......... .......... .......... .......... .......... .......... 450 GGCATTGTCA GAGAGAAAAT TGGGAAATAA CACATCATTT AGTTTTATTT TATGCGGCAC 50097 .......... .......... .......... .......... .......... .......... 450 CACATGTAGT ACTGGATGTT ACTCAGGAAT TAATTTTCAA ATAGTATCAT GTTAGTAACT 50157 .......... .......... .......... .......... .......... .......... 450 CCACAGGGGA GTGTCTGTGT GACTACTACT CTCAAATCTT CAATAACTAG GCCATTAGAT 50217 .......... .......... .......... .......... .......... .......... 450 TGCAAACTAA GTCATTTTGC AGTTAGTCAA ACCAGGTGGT GATGAACACT TCTAGGGTTC 50277 .......... .......... .......... .......... .......... .......... 450 TCAATAACTG CTCTTATGTA TACTTGTTTG TCTGTGTATC CACAAGAATC TGAACCAACA 50337 .......... .......... .......... .......... .......... .......... 450 ACTTGCAAGT TCAATATATC AGCATAGAAG CCCAATACGA CCTCAAACAA CAGAAAAGAA 50397 .......... .......... .......... .......... .......... .......... 450 GAAACTAGCT GTTGAAAAAC AGTCTTCTAA CTTTAAAAAA AAAAAACCGG AGTAACCAAA 50457 .......... .......... .......... .......... .......... .......... 450 TTACAACACT GAATAATATA TCCTAAAATA TGATTAAGTT CAGTACTCTT TCCAATTGAT 50517 .......... .......... .......... .......... .......... .......... 450 GATGCTAGCT CTTGAACTTG GTTTTGTCGT TGTGAATAAT GAATATAATG CTTTTCTAAA 50577 .......... .......... .......... .......... .......... .......... 450 CTAAAGCCAG GTATAAATTA GGTGTCTGTT CATTTTCCCT TTGCTCTTTT ATGCTTGCAT 50637 .......... .......... .......... .......... .......... .......... 450 GCATTTTATT GATAATCTTT TATCAAAATG CAGTGTCTAA TCTTGTTATT TCTCTTCTTT 50697 .......... .......... .......... .......... .......... .......... 450 TATCTTAGGC CAGAGCAGGA GCAGATGTTG TCAGTCCAAG TGACATGATG GATGGTC 50754 || |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ........GC CAGAGCAGGA GCAGATGTTG TCAGTCCAAG TGACATGATG GATGGTC 499 hqPGS_C08HBa0037O11.1+_SGN-E284052+ (44698 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50754) ******************************************************************************** EST sequence 90 +strand 716 n (File: SGN-E260499+) 1 CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 61 AATCTTGTAT ATCCACTATT TATTCATGAG GGTGAAGAGG ACACACCTAT TGGAGCAATG 121 CCTGGATGTT ATAGGCTTGG ATGGAGGCAT GGTCTTGTTG AAGAGGTCGC AAAGGCAAGG 181 GATGTTGGAG TCAACAGCAT TGTGCTCTTC CCAAAAGTTC CAGATGCTTT AAAGACCTCT 241 ACAGGAGATG AAGCTTACAA TGACAATGGA TTAGTGCCCC GAACAATACG TTTGCTGAAA 301 GACAAATACC CTGATCTTGT TATCTACACT GATGTTGCTT TGGATCCATA TTCATCTGAT 361 GGGCATGATG GCATTGTGAG AGAAGATGGA GTTATCATGA ATGACGAGAC TGTGCATCAG 421 TTGTGCAAAC AGGCAGTTGC TCAGGCCAGA GCAGGAGCAG ATGTTGTCAG TCCAAGTGAC 481 ATGATGGATG GTCGTGTCGG AGCAATTCGA GCAGCTCTTG ATGCTGAAGG ATTTCAGCAT 541 GTGTCAATCA TGTCATATAC GGCAAAGTAT GCAAGCTCCT TTTATGGACC TTTCAGAGAG 601 GCTTTAGATT CAAATCCACG TTTTGGAGAT AAGAAAACTT ATCAGATGAA CCCCGCAAAT 661 TACAGAGAAG CATTAGTTGA GATGCAAGCA GATGAGTCTG AAGGAACTGA TATTCT Predicted gene structure (within gDNA segment 44104 to 52223): Exon 1 44704 44794 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 44795 44866 ( 72 n); Pd: 0.978 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 2 44867 44940 ( 74 n); cDNA 92 165 ( 74 n); score: 1.000 Intron 2 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 47056 47124 ( 69 n); cDNA 166 234 ( 69 n); score: 1.000 Intron 3 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 47207 47290 ( 84 n); cDNA 235 318 ( 84 n); score: 1.000 Intron 4 47291 47390 ( 100 n); Pd: 0.910 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 47391 47460 ( 70 n); cDNA 319 388 ( 70 n); score: 1.000 Intron 5 47461 49302 (1842 n); Pd: 0.957 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 6 49303 49358 ( 56 n); cDNA 389 444 ( 56 n); score: 1.000 Intron 6 49359 50705 (1347 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 7 50706 50827 ( 122 n); cDNA 445 566 ( 122 n); score: 1.000 Intron 7 50828 51269 ( 442 n); Pd: 0.981 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 8 51270 51341 ( 72 n); cDNA 567 638 ( 72 n); score: 1.000 Intron 8 51342 51436 ( 95 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 9 51437 51514 ( 78 n); cDNA 639 716 ( 78 n); score: 0.987 MATCH C08HBa0037O11.1+ SGN-E260499+ 0.999 716 1.000 C PGS_C08HBa0037O11.1+_SGN-E260499+ (44704 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51514) Alignment (genomic DNA sequence = upper lines): CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 44763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTAATCGTA GGTCGTCAGC AGCAAGAGCT GCATTCCAGG AAACAAATAT AAGCCCTGCA 60 AATCTTGTAT ATCCACTATT TATTCATGAG GGTGAGTACT TGTCTGAATT CCTCTCTGCT 44823 |||||||||| |||||||||| |||||||||| | AATCTTGTAT ATCCACTATT TATTCATGAG G......... .......... .......... 91 TATAACATGT ATCAATCTGT TCTTACGAAT CACACACTTG CAGGTGAAGA GGACACACCT 44883 ||||||| |||||||||| .......... .......... .......... .......... ...GTGAAGA GGACACACCT 108 ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAGGTC 44943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATTGGAGCAA TGCCTGGATG TTATAGGCTT GGATGGAGGC ATGGTCTTGT TGAAGAG... 165 GGTGAGCTAT CCCTAGGATT CTTTGTCCTC TATAATGTCT TTTTTTAGAT CAGAATTTCA 45003 .......... .......... .......... .......... .......... .......... 165 GCATTTTGGT TCCTTAATTC AATTCTTCTT TGTCTAATTG ATCTTGTCAT ATAATCCTGC 45063 .......... .......... .......... .......... .......... .......... 165 TCCCTGTTCT TCCAAATTTT AGCTGGTGAT AATGAAGTAT CTGATGCATT TGATCACATA 45123 .......... .......... .......... .......... .......... .......... 165 AATAGCGAGC AATGTTCTTT ATCAAGTATC TAATGTTTAT GATAGGTGGA AGGTAGTTTC 45183 .......... .......... .......... .......... .......... .......... 165 GTTTAAGGCA GCCTGACCAC CGTAACTCTA CTTTGGGCCA TAAGTAGCTC TCTCCTTGAT 45243 .......... .......... .......... .......... .......... .......... 165 TAATTTTGAT ATGTTGACCT TGTAGCCCTG CTTTGTATTG GTTCACAGTG TATCTAATTG 45303 .......... .......... .......... .......... .......... .......... 165 ATGATGATGT GCTGCATTGG TCTTGTTGCT ATGATTTTGC TATATCTTGA GGGTGATTTG 45363 .......... .......... .......... .......... .......... .......... 165 CTTTCCATTG TCCATTTGTT TTCCATTATG TATGTTATTA TGACCAGACC AGTATCATTA 45423 .......... .......... .......... .......... .......... .......... 165 CAATATTGCT AGTATTAATG ATAAAAACCA TTATCATTAC ATTATTGCTG GTATCAATGA 45483 .......... .......... .......... .......... .......... .......... 165 TCAAAGTTTT ACCATAGCAT TAGGGGTAAA GTGTCTTTCT TGTTTGGTGA TCAGTCAACG 45543 .......... .......... .......... .......... .......... .......... 165 AAGTCATTCT GGATAAACAA AACGCTATCC TCGTAATTTG TTGTAGGTTT TTATTTTTCA 45603 .......... .......... .......... .......... .......... .......... 165 ATTTTCGATG TTGTATTTAT TGGAGAGGGG TAGAGGGGCA GAGGGGCAGG CCCATTATTC 45663 .......... .......... .......... .......... .......... .......... 165 ACTTTGTTTT AAACCATGCT CCAAGGGCTA GGGGGATTTC TCTGTTACAA AAAAAAAAGA 45723 .......... .......... .......... .......... .......... .......... 165 TTTCCTCTTT TTGGGTTGGG AAAATACATC ACCGGATTTT AGGCTAAATA AAGACTATGA 45783 .......... .......... .......... .......... .......... .......... 165 TCATTTGTGG GTACCAGTCA CACATGTCAG GATTATCAAC GGACATGCCT GTCTAGATTC 45843 .......... .......... .......... .......... .......... .......... 165 TGACTGCTCT TGTTTGGCAA AAATAATTAA AATAACGCTG TCAAGAACTC TGCTCTCAGA 45903 .......... .......... .......... .......... .......... .......... 165 TTCCTCTGAG GCACTCGCGA TGTGTAATAA GAGAGGTGTG TGGTCTGGAC ATATTATTCA 45963 .......... .......... .......... .......... .......... .......... 165 GTATTTTAAA TATATTCAAG ACTTCAATTA CAGATACCAG AACAAAGTAT AAATTTCGAA 46023 .......... .......... .......... .......... .......... .......... 165 TTCAGGTCCA ATATTCATTG TAACTTTGTT AGGTTGGGTA GGATGAAAGA CATTATTTTT 46083 .......... .......... .......... .......... .......... .......... 165 TCAAAAGAAA GAAAGACCTG CAAAGAATTC CTTTTCTTTT TTTTCACCAA AACAGTATTT 46143 .......... .......... .......... .......... .......... .......... 165 AATTATAATC TTCCAGTGAA TAAATCGATC TTTTTTTCCC ATCTCAAAAA AGACTGATTT 46203 .......... .......... .......... .......... .......... .......... 165 ATTCACTGGA AGATGATAGT TAAATTCTGG TTTGGTAAAA AGGAAATCTT TGCAGGTCCT 46263 .......... .......... .......... .......... .......... .......... 165 AGGTGCAGGT TTAACTTTTA AGTGTAGATA TCAGGAAAAA GGGAAGGACA ATAAACAGAG 46323 .......... .......... .......... .......... .......... .......... 165 AAAAAGAAAA AGAAAAAGAA ATAGAAATGC ATACAACAAC TATTAAAATT TACTACTACA 46383 .......... .......... .......... .......... .......... .......... 165 CCTCAATCAC AAGCAAATTG GGGGATCAGA CAAGCTACCA TGTATACTCA CGTATATACT 46443 .......... .......... .......... .......... .......... .......... 165 TATTTGCTAA TGGGTTGAGA ATGTATAGGA TGCTCTTTTA ATTGGAGGAA ATTACCTTGG 46503 .......... .......... .......... .......... .......... .......... 165 AGGCTAATAA GTACTTTGGC GATAATTGGT ACTTTTACAA TTCTTTTGTC CATGTTATTG 46563 .......... .......... .......... .......... .......... .......... 165 ACAGCCTCAT GTACAATATT CAAGGAAACC TACATTTACT TGAGTAGAAA TCAAACAAAG 46623 .......... .......... .......... .......... .......... .......... 165 TACTTGTAAG CTAAAATTAG TTGCTGTAAA TCTGTTGTAG CAGAAGTGGA GTCTCCAGTG 46683 .......... .......... .......... .......... .......... .......... 165 GATGATACAT GGGTAGGCTA TTATAGATGG GTCTGTATTG CACTCAATTG CTCATCTGCA 46743 .......... .......... .......... .......... .......... .......... 165 GTTGCCGCCT CTGATTGAGA AGTAAATACC AAATGGAACT TGAACATTTC TAGAATTTTA 46803 .......... .......... .......... .......... .......... .......... 165 CCAGCTTCCA GAATATGATC ATTCTTCACA CTTACTGTCA TATGCTTTTA GAGGGCTCAT 46863 .......... .......... .......... .......... .......... .......... 165 ATAAGTCTTG TCGATGATTT GGTTCCAAGC TTGCTGTCCG TGACACATAA TTTTCAGTAC 46923 .......... .......... .......... .......... .......... .......... 165 TTAACAAAAC AACAAATTGG CTTGGTTAAA GATACATCTA GATCATATTT AAGGATTCAA 46983 .......... .......... .......... .......... .......... .......... 165 CTGCGATCAT AGCACCTTTG TAATACTTCT GTGCATTCTT TTGAGCAAGT GGATTTACTT 47043 .......... .......... .......... .......... .......... .......... 165 TTTCTTATGC AGGTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 47103 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTCGCAAA GGCAAGGGAT GTTGGAGTCA ACAGCATTGT GCTCTTCCCA 213 AAAGTTCCAG ATGCTTTAAA GGTCCTCTTC TAGACTTCTA CCAGCATAAA TTTCCATGTA 47163 |||||||||| |||||||||| | AAAGTTCCAG ATGCTTTAAA G......... .......... .......... .......... 234 CCATCTGACT TCAGATTATA TAACTTGTTT CCTGCAACTT CAGACCTCTA CAGGAGATGA 47223 ||||||| |||||||||| .......... .......... .......... .......... ...ACCTCTA CAGGAGATGA 251 AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 47283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTACAAT GACAATGGAT TAGTGCCCCG AACAATACGT TTGCTGAAAG ACAAATACCC 311 TGATCTTGTA TGTCGATACA TATCATCTGG TTTCTTTTAT CTGCTTAAAC AACTTTTCTG 47343 ||||||| TGATCTT... .......... .......... .......... .......... .......... 318 TGGGAAAATC CTGGCGCTTC CTTTTATGTT TGATGCGTTT TCAATAGGTT ATCTACACTG 47403 ||| |||||||||| .......... .......... .......... .......... .......GTT ATCTACACTG 331 ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATGGTA 47463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATGTTGCTTT GGATCCATAT TCATCTGATG GGCATGATGG CATTGTGAGA GAAGATG... 388 AGACATAATT TTGTGTTCAT ACCAGCCTAA TGAGAAAACC TTTTATTGCC AAATTACATA 47523 .......... .......... .......... .......... .......... .......... 388 AAAATTAAGA AAAAACAGTT CTAATAGATA TAATACACAT GAACCCATGG AATCCATTCT 47583 .......... .......... .......... .......... .......... .......... 388 GTAAATTCTA TCTCATATAG CATATCCTAT TATTGTAGCT TATGTTTATT ATCTCTGTTA 47643 .......... .......... .......... .......... .......... .......... 388 ACTTTGAATT GATGCTGATG CAATGAGGTA AGTTCTCTTT CTTGGTTATG GTGATAGCTG 47703 .......... .......... .......... .......... .......... .......... 388 TTAGTGTACT TCAGTCTTTA GCTTCTTGAA TTATTATATG AAGGAGTAAG TTGTCTTGTT 47763 .......... .......... .......... .......... .......... .......... 388 TACTGAAATA TTTGGATGAT GATCTTTTCT TTCATCACTT CGGGTCACCA TAAAGCATAA 47823 .......... .......... .......... .......... .......... .......... 388 ACCGCCAGTA GCAAAATTCC TCTTCAACAC AAAACCATTC TTTTTTGTTG AAATCATTTC 47883 .......... .......... .......... .......... .......... .......... 388 ATCAAACATG AAAACTTCAT ACATCTTACT TTTGTGACTC CTATTTGTAA GGTAATAACT 47943 .......... .......... .......... .......... .......... .......... 388 GATAGCTTTT GAAACTATAC TGATTCTTGA TGACACTTTA TCTCTATCAT GGATGCTTCC 48003 .......... .......... .......... .......... .......... .......... 388 CTGGATTGCA ATCTGAAATA TAAATGCAAG TTATATTTAT CAAAAGTAAT TAAAGCTGCA 48063 .......... .......... .......... .......... .......... .......... 388 TTTATCATTG CAAATAATTT TACAGAAAAT ATTTGCTGTG AAGATGAGGA GAAAATAACT 48123 .......... .......... .......... .......... .......... .......... 388 TGTATTGGGC TTTTTAAGAG CTTATGATAG ATAAACCTTT TTCTTGTTTT CTCTTTCTAT 48183 .......... .......... .......... .......... .......... .......... 388 GTATTATTTT AAAAATAAAG ATATGAACAA AAAAGGCCTT TATTTGGAAA AATTGGGAAT 48243 .......... .......... .......... .......... .......... .......... 388 GCTTTTAATT CCTGTTGCAG TATAGTAATC TTTGTTTAGC AGCTGTAGGA TTCCTAAAGC 48303 .......... .......... .......... .......... .......... .......... 388 ACCTTATAGT TTTTTTTAAT TTTTGGGTAA TACCACTCTC AATTAGGAGT ATCTATAGTT 48363 .......... .......... .......... .......... .......... .......... 388 CTGTTTGATT TAGTTTTAAC CTAAAAGGAA ACCAACAAAC TATGTTGGTT TGATAAATAA 48423 .......... .......... .......... .......... .......... .......... 388 ACAAACCAAA CTAAATCAAA TGTTTTTTTT TCAGTTTTTT TTCTTCGATT TTTTAGTCAC 48483 .......... .......... .......... .......... .......... .......... 388 GTGAAACACA AATTCAATTC ACAGCAAAAG GTAAAATCTC TCAAATGTCA ATACATGTTT 48543 .......... .......... .......... .......... .......... .......... 388 AGAAATAATC AAGCAGATAG ATTAACTTAT CATCTATTGA AACATCCACA TATGGGAAGT 48603 .......... .......... .......... .......... .......... .......... 388 TCACCTTGAG ACATGATAAT TATCCACTTC CAAAACTAAT AAAACAAATA TACATCCATC 48663 .......... .......... .......... .......... .......... .......... 388 TATGCTGCCA AAATTAATTA AACTTAATGA TTTAAAAATA ATATACAAAT CACGCCTAAA 48723 .......... .......... .......... .......... .......... .......... 388 TGACTTCAAT ATATGTGAAT AGAAAATTCA AGCAAGCATC ACGAACATGT TAAGACAAAT 48783 .......... .......... .......... .......... .......... .......... 388 TTAAAATTTT TTTGTTATTA AAACTATATA AAGTTCTAAA AGAATATCTA CCAGATATTT 48843 .......... .......... .......... .......... .......... .......... 388 ATGTCTGTAG AATTATACAA AATCCAATTG ATACAAGTCA ATGAACAAGT TTTTTCAGTC 48903 .......... .......... .......... .......... .......... .......... 388 AGTTTGGTTT GGTTTTTTAG TAACACCTAA CTCTCTTGGA AGTTCTAATA CTGCAGTTTG 48963 .......... .......... .......... .......... .......... .......... 388 TATGTGTTTG AGAAAGGCTT CCAACAGTTG ATACCTTTAG CATGGCCTTA GTTATGAATG 49023 .......... .......... .......... .......... .......... .......... 388 TTTGTCAAAG TTTTGTTGGT GACATTTGTA CTTGTTTCTC TGTTGTTAAT TGTGTATCTC 49083 .......... .......... .......... .......... .......... .......... 388 CTCTTTTGCA TCAATGGTAT TTTATTTTCC ATAAAAGGAT TAGAATTGGA TGAATTTCCT 49143 .......... .......... .......... .......... .......... .......... 388 TGTTAATAGA GCTTGAGCGA AGACAAAATG TTTAAAGACG AAGATAACAC AAAAATATTT 49203 .......... .......... .......... .......... .......... .......... 388 GCCTTTATGT GTTTAATAAA AATGAATGAC CACAAATGTA CAGAGTTAAT GGCTTTTTGA 49263 .......... .......... .......... .......... .......... .......... 388 ATACTTAAGT TTGGTTTTGG TCTTCTGAAA TGGCTGCAGG AGTTATCATG AATGACGAGA 49323 | |||||||||| |||||||||| .......... .......... .......... .........G AGTTATCATG AATGACGAGA 409 CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CTCAGGTTAT CTTCTATTTC ATATGATAAT 49383 |||||||||| |||||||||| |||||||||| ||||| CTGTGCATCA GTTGTGCAAA CAGGCAGTTG CTCAG..... .......... .......... 444 GTTTCTTCAC AACAGACAAG CTTCCATCGC TGTTTCTACA CTTGCTTATA TACATATTTC 49443 .......... .......... .......... .......... .......... .......... 444 ATTTTGAACT TTGTTGAGCT GCACCATTTC GTGTTCTTCG AGAATAATTT CTGTAATGCT 49503 .......... .......... .......... .......... .......... .......... 444 GGCTGAGTGT TTGACTTGAG AAGTTGAGAT ATTATTCTTA CTTTTGCAAG TAGTGTGACC 49563 .......... .......... .......... .......... .......... .......... 444 TTACCGGGAA AACTATTCAC CATGTCATTT TGCTGGATAT AGAGATTAGA GGCTGATGGC 49623 .......... .......... .......... .......... .......... .......... 444 TAAATATCTA GTTGAAGAAC AATTATTATT GATGGTCGCC ATCTCTTTCT TTTTATTGTT 49683 .......... .......... .......... .......... .......... .......... 444 TTTATTCCTT TCTTTTACCT GCTATTGTTT CTTTTAAGAC TGAACATGAT TGTAGTCATT 49743 .......... .......... .......... .......... .......... .......... 444 ATGATTACTA AGTATAGAAG CTTACAATCC CAAAAAGGTT TGATGGCCAC CATCTCTTTC 49803 .......... .......... .......... .......... .......... .......... 444 TTTTTATTGC TTTTATTCCT TTCATTTACC TACTATTGTT TCTTTTAAGA CTGAACATGA 49863 .......... .......... .......... .......... .......... .......... 444 TTGTAGTCAT TATGATTACT AAGTATAGAA GCTTACAATC CCAAAAAGGT TAATTCATCC 49923 .......... .......... .......... .......... .......... .......... 444 CAAGTGGGGA TACAGCGACA TTGGTGGAAT AATGCTAGTC ATGCAGGAAA ACCAGCCTGA 49983 .......... .......... .......... .......... .......... .......... 444 GTGGGTGTAA TAGGTTGAAG GCAATGGCGC TGAAGATTTG GGTGGGTGGG TAAGGGCATT 50043 .......... .......... .......... .......... .......... .......... 444 GTCAGAGAGA AAATTGGGAA ATAACACATC ATTTAGTTTT ATTTTATGCG GCACCACATG 50103 .......... .......... .......... .......... .......... .......... 444 TAGTACTGGA TGTTACTCAG GAATTAATTT TCAAATAGTA TCATGTTAGT AACTCCACAG 50163 .......... .......... .......... .......... .......... .......... 444 GGGAGTGTCT GTGTGACTAC TACTCTCAAA TCTTCAATAA CTAGGCCATT AGATTGCAAA 50223 .......... .......... .......... .......... .......... .......... 444 CTAAGTCATT TTGCAGTTAG TCAAACCAGG TGGTGATGAA CACTTCTAGG GTTCTCAATA 50283 .......... .......... .......... .......... .......... .......... 444 ACTGCTCTTA TGTATACTTG TTTGTCTGTG TATCCACAAG AATCTGAACC AACAACTTGC 50343 .......... .......... .......... .......... .......... .......... 444 AAGTTCAATA TATCAGCATA GAAGCCCAAT ACGACCTCAA ACAACAGAAA AGAAGAAACT 50403 .......... .......... .......... .......... .......... .......... 444 AGCTGTTGAA AAACAGTCTT CTAACTTTAA AAAAAAAAAA CCGGAGTAAC CAAATTACAA 50463 .......... .......... .......... .......... .......... .......... 444 CACTGAATAA TATATCCTAA AATATGATTA AGTTCAGTAC TCTTTCCAAT TGATGATGCT 50523 .......... .......... .......... .......... .......... .......... 444 AGCTCTTGAA CTTGGTTTTG TCGTTGTGAA TAATGAATAT AATGCTTTTC TAAACTAAAG 50583 .......... .......... .......... .......... .......... .......... 444 CCAGGTATAA ATTAGGTGTC TGTTCATTTT CCCTTTGCTC TTTTATGCTT GCATGCATTT 50643 .......... .......... .......... .......... .......... .......... 444 TATTGATAAT CTTTTATCAA AATGCAGTGT CTAATCTTGT TATTTCTCTT CTTTTATCTT 50703 .......... .......... .......... .......... .......... .......... 444 AGGCCAGAGC AGGAGCAGAT GTTGTCAGTC CAAGTGACAT GATGGATGGT CGTGTCGGAG 50763 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GCCAGAGC AGGAGCAGAT GTTGTCAGTC CAAGTGACAT GATGGATGGT CGTGTCGGAG 502 CAATTCGAGC AGCTCTTGAT GCTGAAGGAT TTCAGCATGT GTCAATCATG TCATATACGG 50823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTCGAGC AGCTCTTGAT GCTGAAGGAT TTCAGCATGT GTCAATCATG TCATATACGG 562 CAAAGTAATT TTCAGAACTC ATAAGTTCTG TCAATGTAGA TATTATATAT AAGTCCTGGA 50883 |||| CAAA...... .......... .......... .......... .......... .......... 566 AATATTTAGT TGTTTGCAGA TAGATTCAGT ATTCAATAGA TTCAGTATTC AATGAGGCCA 50943 .......... .......... .......... .......... .......... .......... 566 TTTTTCTATG TTTGTGCTTT ACCCCTCTTG TATATTGAGA AGTATATCTT ACATCTTAGA 51003 .......... .......... .......... .......... .......... .......... 566 TCAAAGCCTA AATGGGTTAG CATCATCATA TGGTAACTTC TCATTTTATT TTTTAATGTA 51063 .......... .......... .......... .......... .......... .......... 566 AGCACTCAGA GGCAGCTAAA GATCTTATTC TTTTCATGTA AGAGAATTTG GTGATCAGTC 51123 .......... .......... .......... .......... .......... .......... 566 TCTCCAATGG TTCCGGATAT TATTGGTCTA AGAACTTAGA ACTCAGAGCT TTGTTTATTT 51183 .......... .......... .......... .......... .......... .......... 566 TATTTTTTTG CTTTTATGGA TTCTTTAATA TTGAAACTCA ACTTCCATCT TTTTTTTTTG 51243 .......... .......... .......... .......... .......... .......... 566 ACTTGTTAGC TTGAATTATA TTGCAGGTAT GCAAGCTCCT TTTATGGACC TTTCAGAGAG 51303 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTAT GCAAGCTCCT TTTATGGACC TTTCAGAGAG 600 GCTTTAGATT CAAATCCACG TTTTGGAGAT AAGAAAACGT ACTGAACAAC AGGCTATTAT 51363 |||||||||| |||||||||| |||||||||| |||||||| GCTTTAGATT CAAATCCACG TTTTGGAGAT AAGAAAAC.. .......... .......... 638 TATTTTCCTT TCATCAAATA TCATTCATTA TGTAGACAAG ATGAGTGTCT TTGAACTTGG 51423 .......... .......... .......... .......... .......... .......... 638 TTTTCACATG CAGTTATCAG ATGAACCCCG CAAATTACAG AGAAGCATTA GTTGAGATGC 51483 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...TTATCAG ATGAACCCCG CAAATTACAG AGAAGCATTA GTTGAGATGC 685 AAGCAGATGA GTCTGAAGGA GCTGATATTC T 51514 |||||||||| |||||||||| ||||||||| | AAGCAGATGA GTCTGAAGGA ACTGATATTC T 716 hqPGS_C08HBa0037O11.1+_SGN-E260499+ (44704 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51514) ******************************************************************************** EST sequence 73 +strand 595 n (File: SGN-E333768+) 1 GTATATCCAC TATTTATTCA TGAGGGTGAA GAGGACACAC CTATTGGAGC AATGCCTGGA 61 TGTTATAGGC TTGGATGGAG GCATGGTCTT GTTGAAGAGG TCGCAAAGGC AAGGGATGTT 121 GGAGTCAACA GCATTGTGCT CTTCCCAAAA GTTCCAGATG CTTTAAAGAC CTCTACAGGA 181 GATGAAGCTT ACAATGACAA TGGATTAGTG CCCCGAACAA TACGTTTGCT GAAAGACAAA 241 TACCCTGATC TTGTTATCTA CACTGATGTT GCTTTGGATC CATATTCATC TGATGGGCAT 301 GATGGCATTG TGAGAGAAGA TGGAGTTATC ATGAATGACG AGACTGTGCA TCAGTTGTGC 361 AAACAGGCAG TTGCTCAGGC CAGAGCAGGA GCAGATGTTG TCAGTCCAAG TGACATGATG 421 GATGGTCGTG TCGGAGCAAT TCGAGCAGCT CTTGATGCTG AAGGATTTCA GCATGTGTCA 481 ATCATGTCAT ATACGGCAAA GTATGCAAGC TCCTTTTATG GACCTTTCAG AGAGGCTTTA 541 GATTCAAATC CACGTTTTGG AGATAAGAAA ACTTATCAGA TGAACCCCGC AAATT Predicted gene structure (within gDNA segment 44026 to 52181): Exon 1 44770 44794 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 44795 44866 ( 72 n); Pd: 0.978 (s: 0), Pa: 0.979 (s: 1.00) Exon 2 44867 44940 ( 74 n); cDNA 26 99 ( 74 n); score: 1.000 Intron 2 44941 47055 (2115 n); Pd: 0.872 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 47056 47124 ( 69 n); cDNA 100 168 ( 69 n); score: 1.000 Intron 3 47125 47206 ( 82 n); Pd: 0.974 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 4 47207 47290 ( 84 n); cDNA 169 252 ( 84 n); score: 1.000 Intron 4 47291 47390 ( 100 n); Pd: 0.910 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 47391 47460 ( 70 n); cDNA 253 322 ( 70 n); score: 1.000 Intron 5 47461 49302 (1842 n); Pd: 0.957 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 6 49303 49358 ( 56 n); cDNA 323 378 ( 56 n); score: 1.000 Intron 6 49359 50705 (1347 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 7 50706 50827 ( 122 n); cDNA 379 500 ( 122 n); score: 1.000 Intron 7 50828 51269 ( 442 n); Pd: 0.981 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 8 51270 51341 ( 72 n); cDNA 501 572 ( 72 n); score: 1.000 Intron 8 51342 51436 ( 95 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 0) Exon 9 51437 51459 ( 23 n); cDNA 573 595 ( 23 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E333768+ 1.000 595 1.000 C PGS_C08HBa0037O11.1+_SGN-E333768+ (44770 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51459) Alignment (genomic DNA sequence = upper lines): GTATATCCAC TATTTATTCA TGAGGGTGAG TACTTGTCTG AATTCCTCTC TGCTTATAAC 44829 |||||||||| |||||||||| ||||| GTATATCCAC TATTTATTCA TGAGG..... .......... .......... .......... 25 ATGTATCAAT CTGTTCTTAC GAATCACACA CTTGCAGGTG AAGAGGACAC ACCTATTGGA 44889 ||| |||||||||| |||||||||| .......... .......... .......... .......GTG AAGAGGACAC ACCTATTGGA 48 GCAATGCCTG GATGTTATAG GCTTGGATGG AGGCATGGTC TTGTTGAAGA GGTCGGTGAG 44949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GCAATGCCTG GATGTTATAG GCTTGGATGG AGGCATGGTC TTGTTGAAGA G......... 99 CTATCCCTAG GATTCTTTGT CCTCTATAAT GTCTTTTTTT AGATCAGAAT TTCAGCATTT 45009 .......... .......... .......... .......... .......... .......... 99 TGGTTCCTTA ATTCAATTCT TCTTTGTCTA ATTGATCTTG TCATATAATC CTGCTCCCTG 45069 .......... .......... .......... .......... .......... .......... 99 TTCTTCCAAA TTTTAGCTGG TGATAATGAA GTATCTGATG CATTTGATCA CATAAATAGC 45129 .......... .......... .......... .......... .......... .......... 99 GAGCAATGTT CTTTATCAAG TATCTAATGT TTATGATAGG TGGAAGGTAG TTTCGTTTAA 45189 .......... .......... .......... .......... .......... .......... 99 GGCAGCCTGA CCACCGTAAC TCTACTTTGG GCCATAAGTA GCTCTCTCCT TGATTAATTT 45249 .......... .......... .......... .......... .......... .......... 99 TGATATGTTG ACCTTGTAGC CCTGCTTTGT ATTGGTTCAC AGTGTATCTA ATTGATGATG 45309 .......... .......... .......... .......... .......... .......... 99 ATGTGCTGCA TTGGTCTTGT TGCTATGATT TTGCTATATC TTGAGGGTGA TTTGCTTTCC 45369 .......... .......... .......... .......... .......... .......... 99 ATTGTCCATT TGTTTTCCAT TATGTATGTT ATTATGACCA GACCAGTATC ATTACAATAT 45429 .......... .......... .......... .......... .......... .......... 99 TGCTAGTATT AATGATAAAA ACCATTATCA TTACATTATT GCTGGTATCA ATGATCAAAG 45489 .......... .......... .......... .......... .......... .......... 99 TTTTACCATA GCATTAGGGG TAAAGTGTCT TTCTTGTTTG GTGATCAGTC AACGAAGTCA 45549 .......... .......... .......... .......... .......... .......... 99 TTCTGGATAA ACAAAACGCT ATCCTCGTAA TTTGTTGTAG GTTTTTATTT TTCAATTTTC 45609 .......... .......... .......... .......... .......... .......... 99 GATGTTGTAT TTATTGGAGA GGGGTAGAGG GGCAGAGGGG CAGGCCCATT ATTCACTTTG 45669 .......... .......... .......... .......... .......... .......... 99 TTTTAAACCA TGCTCCAAGG GCTAGGGGGA TTTCTCTGTT ACAAAAAAAA AAGATTTCCT 45729 .......... .......... .......... .......... .......... .......... 99 CTTTTTGGGT TGGGAAAATA CATCACCGGA TTTTAGGCTA AATAAAGACT ATGATCATTT 45789 .......... .......... .......... .......... .......... .......... 99 GTGGGTACCA GTCACACATG TCAGGATTAT CAACGGACAT GCCTGTCTAG ATTCTGACTG 45849 .......... .......... .......... .......... .......... .......... 99 CTCTTGTTTG GCAAAAATAA TTAAAATAAC GCTGTCAAGA ACTCTGCTCT CAGATTCCTC 45909 .......... .......... .......... .......... .......... .......... 99 TGAGGCACTC GCGATGTGTA ATAAGAGAGG TGTGTGGTCT GGACATATTA TTCAGTATTT 45969 .......... .......... .......... .......... .......... .......... 99 TAAATATATT CAAGACTTCA ATTACAGATA CCAGAACAAA GTATAAATTT CGAATTCAGG 46029 .......... .......... .......... .......... .......... .......... 99 TCCAATATTC ATTGTAACTT TGTTAGGTTG GGTAGGATGA AAGACATTAT TTTTTCAAAA 46089 .......... .......... .......... .......... .......... .......... 99 GAAAGAAAGA CCTGCAAAGA ATTCCTTTTC TTTTTTTTCA CCAAAACAGT ATTTAATTAT 46149 .......... .......... .......... .......... .......... .......... 99 AATCTTCCAG TGAATAAATC GATCTTTTTT TCCCATCTCA AAAAAGACTG ATTTATTCAC 46209 .......... .......... .......... .......... .......... .......... 99 TGGAAGATGA TAGTTAAATT CTGGTTTGGT AAAAAGGAAA TCTTTGCAGG TCCTAGGTGC 46269 .......... .......... .......... .......... .......... .......... 99 AGGTTTAACT TTTAAGTGTA GATATCAGGA AAAAGGGAAG GACAATAAAC AGAGAAAAAG 46329 .......... .......... .......... .......... .......... .......... 99 AAAAAGAAAA AGAAATAGAA ATGCATACAA CAACTATTAA AATTTACTAC TACACCTCAA 46389 .......... .......... .......... .......... .......... .......... 99 TCACAAGCAA ATTGGGGGAT CAGACAAGCT ACCATGTATA CTCACGTATA TACTTATTTG 46449 .......... .......... .......... .......... .......... .......... 99 CTAATGGGTT GAGAATGTAT AGGATGCTCT TTTAATTGGA GGAAATTACC TTGGAGGCTA 46509 .......... .......... .......... .......... .......... .......... 99 ATAAGTACTT TGGCGATAAT TGGTACTTTT ACAATTCTTT TGTCCATGTT ATTGACAGCC 46569 .......... .......... .......... .......... .......... .......... 99 TCATGTACAA TATTCAAGGA AACCTACATT TACTTGAGTA GAAATCAAAC AAAGTACTTG 46629 .......... .......... .......... .......... .......... .......... 99 TAAGCTAAAA TTAGTTGCTG TAAATCTGTT GTAGCAGAAG TGGAGTCTCC AGTGGATGAT 46689 .......... .......... .......... .......... .......... .......... 99 ACATGGGTAG GCTATTATAG ATGGGTCTGT ATTGCACTCA ATTGCTCATC TGCAGTTGCC 46749 .......... .......... .......... .......... .......... .......... 99 GCCTCTGATT GAGAAGTAAA TACCAAATGG AACTTGAACA TTTCTAGAAT TTTACCAGCT 46809 .......... .......... .......... .......... .......... .......... 99 TCCAGAATAT GATCATTCTT CACACTTACT GTCATATGCT TTTAGAGGGC TCATATAAGT 46869 .......... .......... .......... .......... .......... .......... 99 CTTGTCGATG ATTTGGTTCC AAGCTTGCTG TCCGTGACAC ATAATTTTCA GTACTTAACA 46929 .......... .......... .......... .......... .......... .......... 99 AAACAACAAA TTGGCTTGGT TAAAGATACA TCTAGATCAT ATTTAAGGAT TCAACTGCGA 46989 .......... .......... .......... .......... .......... .......... 99 TCATAGCACC TTTGTAATAC TTCTGTGCAT TCTTTTGAGC AAGTGGATTT ACTTTTTCTT 47049 .......... .......... .......... .......... .......... .......... 99 ATGCAGGTCG CAAAGGCAAG GGATGTTGGA GTCAACAGCA TTGTGCTCTT CCCAAAAGTT 47109 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTCG CAAAGGCAAG GGATGTTGGA GTCAACAGCA TTGTGCTCTT CCCAAAAGTT 153 CCAGATGCTT TAAAGGTCCT CTTCTAGACT TCTACCAGCA TAAATTTCCA TGTACCATCT 47169 |||||||||| ||||| CCAGATGCTT TAAAG..... .......... .......... .......... .......... 168 GACTTCAGAT TATATAACTT GTTTCCTGCA ACTTCAGACC TCTACAGGAG ATGAAGCTTA 47229 ||| |||||||||| |||||||||| .......... .......... .......... .......ACC TCTACAGGAG ATGAAGCTTA 191 CAATGACAAT GGATTAGTGC CCCGAACAAT ACGTTTGCTG AAAGACAAAT ACCCTGATCT 47289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGACAAT GGATTAGTGC CCCGAACAAT ACGTTTGCTG AAAGACAAAT ACCCTGATCT 251 TGTATGTCGA TACATATCAT CTGGTTTCTT TTATCTGCTT AAACAACTTT TCTGTGGGAA 47349 | T......... .......... .......... .......... .......... .......... 252 AATCCTGGCG CTTCCTTTTA TGTTTGATGC GTTTTCAATA GGTTATCTAC ACTGATGTTG 47409 ||||||||| |||||||||| .......... .......... .......... .......... .GTTATCTAC ACTGATGTTG 271 CTTTGGATCC ATATTCATCT GATGGGCATG ATGGCATTGT GAGAGAAGAT GGTAAGACAT 47469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CTTTGGATCC ATATTCATCT GATGGGCATG ATGGCATTGT GAGAGAAGAT G......... 322 AATTTTGTGT TCATACCAGC CTAATGAGAA AACCTTTTAT TGCCAAATTA CATAAAAATT 47529 .......... .......... .......... .......... .......... .......... 322 AAGAAAAAAC AGTTCTAATA GATATAATAC ACATGAACCC ATGGAATCCA TTCTGTAAAT 47589 .......... .......... .......... .......... .......... .......... 322 TCTATCTCAT ATAGCATATC CTATTATTGT AGCTTATGTT TATTATCTCT GTTAACTTTG 47649 .......... .......... .......... .......... .......... .......... 322 AATTGATGCT GATGCAATGA GGTAAGTTCT CTTTCTTGGT TATGGTGATA GCTGTTAGTG 47709 .......... .......... .......... .......... .......... .......... 322 TACTTCAGTC TTTAGCTTCT TGAATTATTA TATGAAGGAG TAAGTTGTCT TGTTTACTGA 47769 .......... .......... .......... .......... .......... .......... 322 AATATTTGGA TGATGATCTT TTCTTTCATC ACTTCGGGTC ACCATAAAGC ATAAACCGCC 47829 .......... .......... .......... .......... .......... .......... 322 AGTAGCAAAA TTCCTCTTCA ACACAAAACC ATTCTTTTTT GTTGAAATCA TTTCATCAAA 47889 .......... .......... .......... .......... .......... .......... 322 CATGAAAACT TCATACATCT TACTTTTGTG ACTCCTATTT GTAAGGTAAT AACTGATAGC 47949 .......... .......... .......... .......... .......... .......... 322 TTTTGAAACT ATACTGATTC TTGATGACAC TTTATCTCTA TCATGGATGC TTCCCTGGAT 48009 .......... .......... .......... .......... .......... .......... 322 TGCAATCTGA AATATAAATG CAAGTTATAT TTATCAAAAG TAATTAAAGC TGCATTTATC 48069 .......... .......... .......... .......... .......... .......... 322 ATTGCAAATA ATTTTACAGA AAATATTTGC TGTGAAGATG AGGAGAAAAT AACTTGTATT 48129 .......... .......... .......... .......... .......... .......... 322 GGGCTTTTTA AGAGCTTATG ATAGATAAAC CTTTTTCTTG TTTTCTCTTT CTATGTATTA 48189 .......... .......... .......... .......... .......... .......... 322 TTTTAAAAAT AAAGATATGA ACAAAAAAGG CCTTTATTTG GAAAAATTGG GAATGCTTTT 48249 .......... .......... .......... .......... .......... .......... 322 AATTCCTGTT GCAGTATAGT AATCTTTGTT TAGCAGCTGT AGGATTCCTA AAGCACCTTA 48309 .......... .......... .......... .......... .......... .......... 322 TAGTTTTTTT TAATTTTTGG GTAATACCAC TCTCAATTAG GAGTATCTAT AGTTCTGTTT 48369 .......... .......... .......... .......... .......... .......... 322 GATTTAGTTT TAACCTAAAA GGAAACCAAC AAACTATGTT GGTTTGATAA ATAAACAAAC 48429 .......... .......... .......... .......... .......... .......... 322 CAAACTAAAT CAAATGTTTT TTTTTCAGTT TTTTTTCTTC GATTTTTTAG TCACGTGAAA 48489 .......... .......... .......... .......... .......... .......... 322 CACAAATTCA ATTCACAGCA AAAGGTAAAA TCTCTCAAAT GTCAATACAT GTTTAGAAAT 48549 .......... .......... .......... .......... .......... .......... 322 AATCAAGCAG ATAGATTAAC TTATCATCTA TTGAAACATC CACATATGGG AAGTTCACCT 48609 .......... .......... .......... .......... .......... .......... 322 TGAGACATGA TAATTATCCA CTTCCAAAAC TAATAAAACA AATATACATC CATCTATGCT 48669 .......... .......... .......... .......... .......... .......... 322 GCCAAAATTA ATTAAACTTA ATGATTTAAA AATAATATAC AAATCACGCC TAAATGACTT 48729 .......... .......... .......... .......... .......... .......... 322 CAATATATGT GAATAGAAAA TTCAAGCAAG CATCACGAAC ATGTTAAGAC AAATTTAAAA 48789 .......... .......... .......... .......... .......... .......... 322 TTTTTTTGTT ATTAAAACTA TATAAAGTTC TAAAAGAATA TCTACCAGAT ATTTATGTCT 48849 .......... .......... .......... .......... .......... .......... 322 GTAGAATTAT ACAAAATCCA ATTGATACAA GTCAATGAAC AAGTTTTTTC AGTCAGTTTG 48909 .......... .......... .......... .......... .......... .......... 322 GTTTGGTTTT TTAGTAACAC CTAACTCTCT TGGAAGTTCT AATACTGCAG TTTGTATGTG 48969 .......... .......... .......... .......... .......... .......... 322 TTTGAGAAAG GCTTCCAACA GTTGATACCT TTAGCATGGC CTTAGTTATG AATGTTTGTC 49029 .......... .......... .......... .......... .......... .......... 322 AAAGTTTTGT TGGTGACATT TGTACTTGTT TCTCTGTTGT TAATTGTGTA TCTCCTCTTT 49089 .......... .......... .......... .......... .......... .......... 322 TGCATCAATG GTATTTTATT TTCCATAAAA GGATTAGAAT TGGATGAATT TCCTTGTTAA 49149 .......... .......... .......... .......... .......... .......... 322 TAGAGCTTGA GCGAAGACAA AATGTTTAAA GACGAAGATA ACACAAAAAT ATTTGCCTTT 49209 .......... .......... .......... .......... .......... .......... 322 ATGTGTTTAA TAAAAATGAA TGACCACAAA TGTACAGAGT TAATGGCTTT TTGAATACTT 49269 .......... .......... .......... .......... .......... .......... 322 AAGTTTGGTT TTGGTCTTCT GAAATGGCTG CAGGAGTTAT CATGAATGAC GAGACTGTGC 49329 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GAGTTAT CATGAATGAC GAGACTGTGC 349 ATCAGTTGTG CAAACAGGCA GTTGCTCAGG TTATCTTCTA TTTCATATGA TAATGTTTCT 49389 |||||||||| |||||||||| ||||||||| ATCAGTTGTG CAAACAGGCA GTTGCTCAG. .......... .......... .......... 378 TCACAACAGA CAAGCTTCCA TCGCTGTTTC TACACTTGCT TATATACATA TTTCATTTTG 49449 .......... .......... .......... .......... .......... .......... 378 AACTTTGTTG AGCTGCACCA TTTCGTGTTC TTCGAGAATA ATTTCTGTAA TGCTGGCTGA 49509 .......... .......... .......... .......... .......... .......... 378 GTGTTTGACT TGAGAAGTTG AGATATTATT CTTACTTTTG CAAGTAGTGT GACCTTACCG 49569 .......... .......... .......... .......... .......... .......... 378 GGAAAACTAT TCACCATGTC ATTTTGCTGG ATATAGAGAT TAGAGGCTGA TGGCTAAATA 49629 .......... .......... .......... .......... .......... .......... 378 TCTAGTTGAA GAACAATTAT TATTGATGGT CGCCATCTCT TTCTTTTTAT TGTTTTTATT 49689 .......... .......... .......... .......... .......... .......... 378 CCTTTCTTTT ACCTGCTATT GTTTCTTTTA AGACTGAACA TGATTGTAGT CATTATGATT 49749 .......... .......... .......... .......... .......... .......... 378 ACTAAGTATA GAAGCTTACA ATCCCAAAAA GGTTTGATGG CCACCATCTC TTTCTTTTTA 49809 .......... .......... .......... .......... .......... .......... 378 TTGCTTTTAT TCCTTTCATT TACCTACTAT TGTTTCTTTT AAGACTGAAC ATGATTGTAG 49869 .......... .......... .......... .......... .......... .......... 378 TCATTATGAT TACTAAGTAT AGAAGCTTAC AATCCCAAAA AGGTTAATTC ATCCCAAGTG 49929 .......... .......... .......... .......... .......... .......... 378 GGGATACAGC GACATTGGTG GAATAATGCT AGTCATGCAG GAAAACCAGC CTGAGTGGGT 49989 .......... .......... .......... .......... .......... .......... 378 GTAATAGGTT GAAGGCAATG GCGCTGAAGA TTTGGGTGGG TGGGTAAGGG CATTGTCAGA 50049 .......... .......... .......... .......... .......... .......... 378 GAGAAAATTG GGAAATAACA CATCATTTAG TTTTATTTTA TGCGGCACCA CATGTAGTAC 50109 .......... .......... .......... .......... .......... .......... 378 TGGATGTTAC TCAGGAATTA ATTTTCAAAT AGTATCATGT TAGTAACTCC ACAGGGGAGT 50169 .......... .......... .......... .......... .......... .......... 378 GTCTGTGTGA CTACTACTCT CAAATCTTCA ATAACTAGGC CATTAGATTG CAAACTAAGT 50229 .......... .......... .......... .......... .......... .......... 378 CATTTTGCAG TTAGTCAAAC CAGGTGGTGA TGAACACTTC TAGGGTTCTC AATAACTGCT 50289 .......... .......... .......... .......... .......... .......... 378 CTTATGTATA CTTGTTTGTC TGTGTATCCA CAAGAATCTG AACCAACAAC TTGCAAGTTC 50349 .......... .......... .......... .......... .......... .......... 378 AATATATCAG CATAGAAGCC CAATACGACC TCAAACAACA GAAAAGAAGA AACTAGCTGT 50409 .......... .......... .......... .......... .......... .......... 378 TGAAAAACAG TCTTCTAACT TTAAAAAAAA AAAACCGGAG TAACCAAATT ACAACACTGA 50469 .......... .......... .......... .......... .......... .......... 378 ATAATATATC CTAAAATATG ATTAAGTTCA GTACTCTTTC CAATTGATGA TGCTAGCTCT 50529 .......... .......... .......... .......... .......... .......... 378 TGAACTTGGT TTTGTCGTTG TGAATAATGA ATATAATGCT TTTCTAAACT AAAGCCAGGT 50589 .......... .......... .......... .......... .......... .......... 378 ATAAATTAGG TGTCTGTTCA TTTTCCCTTT GCTCTTTTAT GCTTGCATGC ATTTTATTGA 50649 .......... .......... .......... .......... .......... .......... 378 TAATCTTTTA TCAAAATGCA GTGTCTAATC TTGTTATTTC TCTTCTTTTA TCTTAGGCCA 50709 |||| .......... .......... .......... .......... .......... ......GCCA 382 GAGCAGGAGC AGATGTTGTC AGTCCAAGTG ACATGATGGA TGGTCGTGTC GGAGCAATTC 50769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAGGAGC AGATGTTGTC AGTCCAAGTG ACATGATGGA TGGTCGTGTC GGAGCAATTC 442 GAGCAGCTCT TGATGCTGAA GGATTTCAGC ATGTGTCAAT CATGTCATAT ACGGCAAAGT 50829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GAGCAGCTCT TGATGCTGAA GGATTTCAGC ATGTGTCAAT CATGTCATAT ACGGCAAA.. 500 AATTTTCAGA ACTCATAAGT TCTGTCAATG TAGATATTAT ATATAAGTCC TGGAAATATT 50889 .......... .......... .......... .......... .......... .......... 500 TAGTTGTTTG CAGATAGATT CAGTATTCAA TAGATTCAGT ATTCAATGAG GCCATTTTTC 50949 .......... .......... .......... .......... .......... .......... 500 TATGTTTGTG CTTTACCCCT CTTGTATATT GAGAAGTATA TCTTACATCT TAGATCAAAG 51009 .......... .......... .......... .......... .......... .......... 500 CCTAAATGGG TTAGCATCAT CATATGGTAA CTTCTCATTT TATTTTTTAA TGTAAGCACT 51069 .......... .......... .......... .......... .......... .......... 500 CAGAGGCAGC TAAAGATCTT ATTCTTTTCA TGTAAGAGAA TTTGGTGATC AGTCTCTCCA 51129 .......... .......... .......... .......... .......... .......... 500 ATGGTTCCGG ATATTATTGG TCTAAGAACT TAGAACTCAG AGCTTTGTTT ATTTTATTTT 51189 .......... .......... .......... .......... .......... .......... 500 TTTGCTTTTA TGGATTCTTT AATATTGAAA CTCAACTTCC ATCTTTTTTT TTTGACTTGT 51249 .......... .......... .......... .......... .......... .......... 500 TAGCTTGAAT TATATTGCAG GTATGCAAGC TCCTTTTATG GACCTTTCAG AGAGGCTTTA 51309 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTATGCAAGC TCCTTTTATG GACCTTTCAG AGAGGCTTTA 540 GATTCAAATC CACGTTTTGG AGATAAGAAA ACGTACTGAA CAACAGGCTA TTATTATTTT 51369 |||||||||| |||||||||| |||||||||| || GATTCAAATC CACGTTTTGG AGATAAGAAA AC........ .......... .......... 572 CCTTTCATCA AATATCATTC ATTATGTAGA CAAGATGAGT GTCTTTGAAC TTGGTTTTCA 51429 .......... .......... .......... .......... .......... .......... 572 CATGCAGTTA TCAGATGAAC CCCGCAAATT 51459 ||| |||||||||| |||||||||| .......TTA TCAGATGAAC CCCGCAAATT 595 hqPGS_C08HBa0037O11.1+_SGN-E333768+ (44770 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51459) ******************************************************************************** EST sequence 2 +strand 562 n (File: SGN-E313185+) 1 GGCATTGTGA GAGAAGATGG AGTTATCATG AATGACGAGA CTGTGCATCA GTTGTGCAAA 61 CAGGCAGTTG CTCAGGCCAG AGCAGGAGCA GATGTTGTCA GTCCAAGTGA CATGATGGAT 121 GGTCGTGTCG GAGCAATTCG AGCAGCTCTT GATGCTGAAG GATTTCAGCA TGTGTCAATC 181 ATGTCATATA CGGCAAAGTA TGCAAGCTCC TTTTATGGAC CTTTCAGAGA GGCTTTAGAT 241 TCAAATCCAC GTTTTGGAGA TAAGAAAACT TATCAGATGA ACCCCGCAAA TTACAGAGAA 301 GCATTAGTTG AGATGCAAGC AGATGAGTCT GAAGGAGCTG ATATTCTTCT TGTTAAACCA 361 GGTTTGCCTT ATTTGGATAT TATTAGGCTT CTTCGGGATA AATCTCCTTT GCCCATAGCT 421 GCCTATCAGG TTTCAGGTGA ATACTCGATG ATCAAAGCAG GTGGGGTTCT AAAAATGATC 481 GATGAAGAAA GGGTTATGAT GGAATCATTG ATGTGCCTTC GACGAGCTGG TGCTGACATA 541 ATTTTGACCT ATTTTGCTCT GC Predicted gene structure (within gDNA segment 48522 to 53501): Exon 1 49303 49358 ( 56 n); cDNA 20 75 ( 56 n); score: 1.000 Intron 1 49359 50705 (1347 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 50706 50827 ( 122 n); cDNA 76 197 ( 122 n); score: 1.000 Intron 2 50828 51269 ( 442 n); Pd: 0.981 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 51270 51341 ( 72 n); cDNA 198 269 ( 72 n); score: 1.000 Intron 3 51342 51436 ( 95 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 51437 51518 ( 82 n); cDNA 270 351 ( 82 n); score: 1.000 Intron 4 51519 51609 ( 91 n); Pd: 0.977 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 5 51610 51687 ( 78 n); cDNA 352 429 ( 78 n); score: 1.000 Intron 5 51688 52758 (1071 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 52759 52891 ( 133 n); cDNA 430 562 ( 133 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E313185+ 1.000 543 0.966 C PGS_C08HBa0037O11.1+_SGN-E313185+ (49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 52891) Alignment (genomic DNA sequence = upper lines): GAGTTATCAT GAATGACGAG ACTGTGCATC AGTTGTGCAA ACAGGCAGTT GCTCAGGTTA 49362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAGTTATCAT GAATGACGAG ACTGTGCATC AGTTGTGCAA ACAGGCAGTT GCTCAG.... 75 TCTTCTATTT CATATGATAA TGTTTCTTCA CAACAGACAA GCTTCCATCG CTGTTTCTAC 49422 .......... .......... .......... .......... .......... .......... 75 ACTTGCTTAT ATACATATTT CATTTTGAAC TTTGTTGAGC TGCACCATTT CGTGTTCTTC 49482 .......... .......... .......... .......... .......... .......... 75 GAGAATAATT TCTGTAATGC TGGCTGAGTG TTTGACTTGA GAAGTTGAGA TATTATTCTT 49542 .......... .......... .......... .......... .......... .......... 75 ACTTTTGCAA GTAGTGTGAC CTTACCGGGA AAACTATTCA CCATGTCATT TTGCTGGATA 49602 .......... .......... .......... .......... .......... .......... 75 TAGAGATTAG AGGCTGATGG CTAAATATCT AGTTGAAGAA CAATTATTAT TGATGGTCGC 49662 .......... .......... .......... .......... .......... .......... 75 CATCTCTTTC TTTTTATTGT TTTTATTCCT TTCTTTTACC TGCTATTGTT TCTTTTAAGA 49722 .......... .......... .......... .......... .......... .......... 75 CTGAACATGA TTGTAGTCAT TATGATTACT AAGTATAGAA GCTTACAATC CCAAAAAGGT 49782 .......... .......... .......... .......... .......... .......... 75 TTGATGGCCA CCATCTCTTT CTTTTTATTG CTTTTATTCC TTTCATTTAC CTACTATTGT 49842 .......... .......... .......... .......... .......... .......... 75 TTCTTTTAAG ACTGAACATG ATTGTAGTCA TTATGATTAC TAAGTATAGA AGCTTACAAT 49902 .......... .......... .......... .......... .......... .......... 75 CCCAAAAAGG TTAATTCATC CCAAGTGGGG ATACAGCGAC ATTGGTGGAA TAATGCTAGT 49962 .......... .......... .......... .......... .......... .......... 75 CATGCAGGAA AACCAGCCTG AGTGGGTGTA ATAGGTTGAA GGCAATGGCG CTGAAGATTT 50022 .......... .......... .......... .......... .......... .......... 75 GGGTGGGTGG GTAAGGGCAT TGTCAGAGAG AAAATTGGGA AATAACACAT CATTTAGTTT 50082 .......... .......... .......... .......... .......... .......... 75 TATTTTATGC GGCACCACAT GTAGTACTGG ATGTTACTCA GGAATTAATT TTCAAATAGT 50142 .......... .......... .......... .......... .......... .......... 75 ATCATGTTAG TAACTCCACA GGGGAGTGTC TGTGTGACTA CTACTCTCAA ATCTTCAATA 50202 .......... .......... .......... .......... .......... .......... 75 ACTAGGCCAT TAGATTGCAA ACTAAGTCAT TTTGCAGTTA GTCAAACCAG GTGGTGATGA 50262 .......... .......... .......... .......... .......... .......... 75 ACACTTCTAG GGTTCTCAAT AACTGCTCTT ATGTATACTT GTTTGTCTGT GTATCCACAA 50322 .......... .......... .......... .......... .......... .......... 75 GAATCTGAAC CAACAACTTG CAAGTTCAAT ATATCAGCAT AGAAGCCCAA TACGACCTCA 50382 .......... .......... .......... .......... .......... .......... 75 AACAACAGAA AAGAAGAAAC TAGCTGTTGA AAAACAGTCT TCTAACTTTA AAAAAAAAAA 50442 .......... .......... .......... .......... .......... .......... 75 ACCGGAGTAA CCAAATTACA ACACTGAATA ATATATCCTA AAATATGATT AAGTTCAGTA 50502 .......... .......... .......... .......... .......... .......... 75 CTCTTTCCAA TTGATGATGC TAGCTCTTGA ACTTGGTTTT GTCGTTGTGA ATAATGAATA 50562 .......... .......... .......... .......... .......... .......... 75 TAATGCTTTT CTAAACTAAA GCCAGGTATA AATTAGGTGT CTGTTCATTT TCCCTTTGCT 50622 .......... .......... .......... .......... .......... .......... 75 CTTTTATGCT TGCATGCATT TTATTGATAA TCTTTTATCA AAATGCAGTG TCTAATCTTG 50682 .......... .......... .......... .......... .......... .......... 75 TTATTTCTCT TCTTTTATCT TAGGCCAGAG CAGGAGCAGA TGTTGTCAGT CCAAGTGACA 50742 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GCCAGAG CAGGAGCAGA TGTTGTCAGT CCAAGTGACA 112 TGATGGATGG TCGTGTCGGA GCAATTCGAG CAGCTCTTGA TGCTGAAGGA TTTCAGCATG 50802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGATGG TCGTGTCGGA GCAATTCGAG CAGCTCTTGA TGCTGAAGGA TTTCAGCATG 172 TGTCAATCAT GTCATATACG GCAAAGTAAT TTTCAGAACT CATAAGTTCT GTCAATGTAG 50862 |||||||||| |||||||||| ||||| TGTCAATCAT GTCATATACG GCAAA..... .......... .......... .......... 197 ATATTATATA TAAGTCCTGG AAATATTTAG TTGTTTGCAG ATAGATTCAG TATTCAATAG 50922 .......... .......... .......... .......... .......... .......... 197 ATTCAGTATT CAATGAGGCC ATTTTTCTAT GTTTGTGCTT TACCCCTCTT GTATATTGAG 50982 .......... .......... .......... .......... .......... .......... 197 AAGTATATCT TACATCTTAG ATCAAAGCCT AAATGGGTTA GCATCATCAT ATGGTAACTT 51042 .......... .......... .......... .......... .......... .......... 197 CTCATTTTAT TTTTTAATGT AAGCACTCAG AGGCAGCTAA AGATCTTATT CTTTTCATGT 51102 .......... .......... .......... .......... .......... .......... 197 AAGAGAATTT GGTGATCAGT CTCTCCAATG GTTCCGGATA TTATTGGTCT AAGAACTTAG 51162 .......... .......... .......... .......... .......... .......... 197 AACTCAGAGC TTTGTTTATT TTATTTTTTT GCTTTTATGG ATTCTTTAAT ATTGAAACTC 51222 .......... .......... .......... .......... .......... .......... 197 AACTTCCATC TTTTTTTTTT GACTTGTTAG CTTGAATTAT ATTGCAGGTA TGCAAGCTCC 51282 ||| |||||||||| .......... .......... .......... .......... .......GTA TGCAAGCTCC 210 TTTTATGGAC CTTTCAGAGA GGCTTTAGAT TCAAATCCAC GTTTTGGAGA TAAGAAAACG 51342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTTATGGAC CTTTCAGAGA GGCTTTAGAT TCAAATCCAC GTTTTGGAGA TAAGAAAAC. 269 TACTGAACAA CAGGCTATTA TTATTTTCCT TTCATCAAAT ATCATTCATT ATGTAGACAA 51402 .......... .......... .......... .......... .......... .......... 269 GATGAGTGTC TTTGAACTTG GTTTTCACAT GCAGTTATCA GATGAACCCC GCAAATTACA 51462 |||||| |||||||||| |||||||||| .......... .......... .......... ....TTATCA GATGAACCCC GCAAATTACA 295 GAGAAGCATT AGTTGAGATG CAAGCAGATG AGTCTGAAGG AGCTGATATT CTTCTTGTTA 51522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAGAAGCATT AGTTGAGATG CAAGCAGATG AGTCTGAAGG AGCTGATATT CTTCTT.... 351 GTATCACATT TGTTGTTCTG CAGAAATTTG GAAATATACT ATTCTTCTAA AGTTGCTGCT 51582 .......... .......... .......... .......... .......... .......... 351 GCTTCTTTTT TTTTTTTGGC ATATCAGGTT AAACCAGGTT TGCCTTATTT GGATATTATT 51642 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT AAACCAGGTT TGCCTTATTT GGATATTATT 384 AGGCTTCTTC GGGATAAATC TCCTTTGCCC ATAGCTGCCT ATCAGGTACT CAGATGTTCA 51702 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGGCTTCTTC GGGATAAATC TCCTTTGCCC ATAGCTGCCT ATCAG..... .......... 429 TTTAGTTTGT TTGTCATCAT CCTTTTTATA AGTAATCAAA GATTTTATAA ATGTTTGCAC 51762 .......... .......... .......... .......... .......... .......... 429 TAGCCACTGC GAGAAAACAT CGCTACTGAT TGTGCAGACT TCCTCTTGTA TCTAAAATTG 51822 .......... .......... .......... .......... .......... .......... 429 CATCAACATC CTGTACAGTA ACCAGGTTGC ACCAAAAAAC TAGCAAAATA ATACTGAATA 51882 .......... .......... .......... .......... .......... .......... 429 TCTTTGTATA AGGCTATGTA AATTTCTCCT ATGGCCTTAA AAAGTTCTTT CATTTCTTTC 51942 .......... .......... .......... .......... .......... .......... 429 AAGCCAAAAG TCCACCAACT GGCTTGAGGG ATGCAATGGA ACCCTAGTTT GTTTTTAAGT 52002 .......... .......... .......... .......... .......... .......... 429 TTGTGCTTAA GAAGAGTTGC TTCATATTCA GCATTGTCAT TTAGATGAGT TGCAATAATA 52062 .......... .......... .......... .......... .......... .......... 429 AGTCCAAAAA GTTCACTCAA GGGTTTTGAT GCTGCTGTGT GACAGATTTG AGATCTCTTC 52122 .......... .......... .......... .......... .......... .......... 429 AATTTACCTG CACGTTATTT TCTTTCTTGA ACAATATATT TGTCACGAAT TTTGGAATCT 52182 .......... .......... .......... .......... .......... .......... 429 GAAACCTTTG TACAGTCTAG ACTTGAGCTA TTGGTATGCA GAATTTAGGA AGATTTCTGG 52242 .......... .......... .......... .......... .......... .......... 429 GGCTCTATGC TCTCAGTATA TCTCGTCACC GCTGCACCTA GTTTTCTGAC TCTTGCCCAT 52302 .......... .......... .......... .......... .......... .......... 429 TTGTTTACAA GCACAAGGGA CTCTGAGGGT AAAGAAAACT CTTTTTCCTG ATAAATGACC 52362 .......... .......... .......... .......... .......... .......... 429 CCTTCTTCCA AATAGCTCTA AATGCTTTGC CAAGTGAATG ATTAAGAGTT CAAGACTTGT 52422 .......... .......... .......... .......... .......... .......... 429 TTTTGCAGAA TTGTTGAATC GTTCAGTTCT GTTAAATTTA ACAGTTTGAC AAAGTAGCAC 52482 .......... .......... .......... .......... .......... .......... 429 TCTGGTGTAT TGAATATAAT TGCTAGTGGA CTAATTCACA CACCATCAAG CATCATAGAG 52542 .......... .......... .......... .......... .......... .......... 429 AGCGTCTTTT CATCGTCATG CAAATTGGGA GTTCATTAAA CAAAAAAATG GAACTTGTGA 52602 .......... .......... .......... .......... .......... .......... 429 CATGACATAT CCATATTCTT TATATGATAC CCTATCATCG TCTTCTTTTA CAGTTTCTGG 52662 .......... .......... .......... .......... .......... .......... 429 TATCTGAAAA CCAATTTCTG CTAATATCCT TCTAGTTTTC GCCTTCATTT CTACACTATA 52722 .......... .......... .......... .......... .......... .......... 429 GTCTTCCAAC AGTTTCTCGG GTTTCTTTCT TCACAGGTTT CAGGTGAATA CTCGATGATC 52782 |||| |||||||||| |||||||||| .......... .......... .......... ......GTTT CAGGTGAATA CTCGATGATC 453 AAAGCAGGTG GGGTTCTAAA AATGATCGAT GAAGAAAGGG TTATGATGGA ATCATTGATG 52842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCAGGTG GGGTTCTAAA AATGATCGAT GAAGAAAGGG TTATGATGGA ATCATTGATG 513 TGCCTTCGAC GAGCTGGTGC TGACATAATT TTGACCTATT TTGCTCTGC 52891 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCCTTCGAC GAGCTGGTGC TGACATAATT TTGACCTATT TTGCTCTGC 562 hqPGS_C08HBa0037O11.1+_SGN-E313185+ (49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 52891) ******************************************************************************** EST sequence 29 +strand 562 n (File: SGN-E262555+) 1 GATGGCATTG TGAGAGAAGA TGGAGTTATC ATGAATGACG AGACTGTGCA TCAGTTGTGC 61 AAACAGGCAG TTGCTCAGGC CAGAGCAGGA GCAGATGTTG TCAGTCCAAG TGACATGATG 121 GATGGTCGTG TCGGAGCAAT TCGAGCAGCT CTTGATGCTG AAGGATTTCA GCATGTGTCA 181 ATCATGTCAT ATACGGCAAA GTATGCAAGC TCCTTTTATG GACCTTTCAG AGAGGCTTTA 241 GATTCAAATC CACGTTTTGG AGATAAGAAA ACTTATCAGA TGAACCCCGC AAATTACAGA 301 GAAGCATTAG TTGAGATGCA AGCAGATGAG TCTGAAGGAG CTGATATTCT TCTTGTTAAA 361 CCAGGTTTGC CTTATTTGGA TATTATTAGG CTTCTTCGGG ATAAATCTCC TTTGCCCATA 421 GCTGCCTATC AGGTTTCAGG TGAATACTCG ATGATCAAAG CAGGTGGGGT TCTAAAAATG 481 ATCGATGAAG AAAGGGTTAT GATGGAATCA TTGATGTGCC TTCGACGAGC TGGTGCTGAC 541 ATAATTTTGA CCTATTTTGC TC Predicted gene structure (within gDNA segment 48492 to 53498): Exon 1 49303 49358 ( 56 n); cDNA 23 78 ( 56 n); score: 1.000 Intron 1 49359 50705 (1347 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 50706 50827 ( 122 n); cDNA 79 200 ( 122 n); score: 1.000 Intron 2 50828 51269 ( 442 n); Pd: 0.981 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 51270 51341 ( 72 n); cDNA 201 272 ( 72 n); score: 1.000 Intron 3 51342 51436 ( 95 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 51437 51518 ( 82 n); cDNA 273 354 ( 82 n); score: 1.000 Intron 4 51519 51609 ( 91 n); Pd: 0.977 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 5 51610 51687 ( 78 n); cDNA 355 432 ( 78 n); score: 1.000 Intron 5 51688 52758 (1071 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 52759 52888 ( 130 n); cDNA 433 562 ( 130 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E262555+ 1.000 540 0.961 C PGS_C08HBa0037O11.1+_SGN-E262555+ (49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 52888) Alignment (genomic DNA sequence = upper lines): GAGTTATCAT GAATGACGAG ACTGTGCATC AGTTGTGCAA ACAGGCAGTT GCTCAGGTTA 49362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAGTTATCAT GAATGACGAG ACTGTGCATC AGTTGTGCAA ACAGGCAGTT GCTCAG.... 78 TCTTCTATTT CATATGATAA TGTTTCTTCA CAACAGACAA GCTTCCATCG CTGTTTCTAC 49422 .......... .......... .......... .......... .......... .......... 78 ACTTGCTTAT ATACATATTT CATTTTGAAC TTTGTTGAGC TGCACCATTT CGTGTTCTTC 49482 .......... .......... .......... .......... .......... .......... 78 GAGAATAATT TCTGTAATGC TGGCTGAGTG TTTGACTTGA GAAGTTGAGA TATTATTCTT 49542 .......... .......... .......... .......... .......... .......... 78 ACTTTTGCAA GTAGTGTGAC CTTACCGGGA AAACTATTCA CCATGTCATT TTGCTGGATA 49602 .......... .......... .......... .......... .......... .......... 78 TAGAGATTAG AGGCTGATGG CTAAATATCT AGTTGAAGAA CAATTATTAT TGATGGTCGC 49662 .......... .......... .......... .......... .......... .......... 78 CATCTCTTTC TTTTTATTGT TTTTATTCCT TTCTTTTACC TGCTATTGTT TCTTTTAAGA 49722 .......... .......... .......... .......... .......... .......... 78 CTGAACATGA TTGTAGTCAT TATGATTACT AAGTATAGAA GCTTACAATC CCAAAAAGGT 49782 .......... .......... .......... .......... .......... .......... 78 TTGATGGCCA CCATCTCTTT CTTTTTATTG CTTTTATTCC TTTCATTTAC CTACTATTGT 49842 .......... .......... .......... .......... .......... .......... 78 TTCTTTTAAG ACTGAACATG ATTGTAGTCA TTATGATTAC TAAGTATAGA AGCTTACAAT 49902 .......... .......... .......... .......... .......... .......... 78 CCCAAAAAGG TTAATTCATC CCAAGTGGGG ATACAGCGAC ATTGGTGGAA TAATGCTAGT 49962 .......... .......... .......... .......... .......... .......... 78 CATGCAGGAA AACCAGCCTG AGTGGGTGTA ATAGGTTGAA GGCAATGGCG CTGAAGATTT 50022 .......... .......... .......... .......... .......... .......... 78 GGGTGGGTGG GTAAGGGCAT TGTCAGAGAG AAAATTGGGA AATAACACAT CATTTAGTTT 50082 .......... .......... .......... .......... .......... .......... 78 TATTTTATGC GGCACCACAT GTAGTACTGG ATGTTACTCA GGAATTAATT TTCAAATAGT 50142 .......... .......... .......... .......... .......... .......... 78 ATCATGTTAG TAACTCCACA GGGGAGTGTC TGTGTGACTA CTACTCTCAA ATCTTCAATA 50202 .......... .......... .......... .......... .......... .......... 78 ACTAGGCCAT TAGATTGCAA ACTAAGTCAT TTTGCAGTTA GTCAAACCAG GTGGTGATGA 50262 .......... .......... .......... .......... .......... .......... 78 ACACTTCTAG GGTTCTCAAT AACTGCTCTT ATGTATACTT GTTTGTCTGT GTATCCACAA 50322 .......... .......... .......... .......... .......... .......... 78 GAATCTGAAC CAACAACTTG CAAGTTCAAT ATATCAGCAT AGAAGCCCAA TACGACCTCA 50382 .......... .......... .......... .......... .......... .......... 78 AACAACAGAA AAGAAGAAAC TAGCTGTTGA AAAACAGTCT TCTAACTTTA AAAAAAAAAA 50442 .......... .......... .......... .......... .......... .......... 78 ACCGGAGTAA CCAAATTACA ACACTGAATA ATATATCCTA AAATATGATT AAGTTCAGTA 50502 .......... .......... .......... .......... .......... .......... 78 CTCTTTCCAA TTGATGATGC TAGCTCTTGA ACTTGGTTTT GTCGTTGTGA ATAATGAATA 50562 .......... .......... .......... .......... .......... .......... 78 TAATGCTTTT CTAAACTAAA GCCAGGTATA AATTAGGTGT CTGTTCATTT TCCCTTTGCT 50622 .......... .......... .......... .......... .......... .......... 78 CTTTTATGCT TGCATGCATT TTATTGATAA TCTTTTATCA AAATGCAGTG TCTAATCTTG 50682 .......... .......... .......... .......... .......... .......... 78 TTATTTCTCT TCTTTTATCT TAGGCCAGAG CAGGAGCAGA TGTTGTCAGT CCAAGTGACA 50742 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GCCAGAG CAGGAGCAGA TGTTGTCAGT CCAAGTGACA 115 TGATGGATGG TCGTGTCGGA GCAATTCGAG CAGCTCTTGA TGCTGAAGGA TTTCAGCATG 50802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGATGG TCGTGTCGGA GCAATTCGAG CAGCTCTTGA TGCTGAAGGA TTTCAGCATG 175 TGTCAATCAT GTCATATACG GCAAAGTAAT TTTCAGAACT CATAAGTTCT GTCAATGTAG 50862 |||||||||| |||||||||| ||||| TGTCAATCAT GTCATATACG GCAAA..... .......... .......... .......... 200 ATATTATATA TAAGTCCTGG AAATATTTAG TTGTTTGCAG ATAGATTCAG TATTCAATAG 50922 .......... .......... .......... .......... .......... .......... 200 ATTCAGTATT CAATGAGGCC ATTTTTCTAT GTTTGTGCTT TACCCCTCTT GTATATTGAG 50982 .......... .......... .......... .......... .......... .......... 200 AAGTATATCT TACATCTTAG ATCAAAGCCT AAATGGGTTA GCATCATCAT ATGGTAACTT 51042 .......... .......... .......... .......... .......... .......... 200 CTCATTTTAT TTTTTAATGT AAGCACTCAG AGGCAGCTAA AGATCTTATT CTTTTCATGT 51102 .......... .......... .......... .......... .......... .......... 200 AAGAGAATTT GGTGATCAGT CTCTCCAATG GTTCCGGATA TTATTGGTCT AAGAACTTAG 51162 .......... .......... .......... .......... .......... .......... 200 AACTCAGAGC TTTGTTTATT TTATTTTTTT GCTTTTATGG ATTCTTTAAT ATTGAAACTC 51222 .......... .......... .......... .......... .......... .......... 200 AACTTCCATC TTTTTTTTTT GACTTGTTAG CTTGAATTAT ATTGCAGGTA TGCAAGCTCC 51282 ||| |||||||||| .......... .......... .......... .......... .......GTA TGCAAGCTCC 213 TTTTATGGAC CTTTCAGAGA GGCTTTAGAT TCAAATCCAC GTTTTGGAGA TAAGAAAACG 51342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTTATGGAC CTTTCAGAGA GGCTTTAGAT TCAAATCCAC GTTTTGGAGA TAAGAAAAC. 272 TACTGAACAA CAGGCTATTA TTATTTTCCT TTCATCAAAT ATCATTCATT ATGTAGACAA 51402 .......... .......... .......... .......... .......... .......... 272 GATGAGTGTC TTTGAACTTG GTTTTCACAT GCAGTTATCA GATGAACCCC GCAAATTACA 51462 |||||| |||||||||| |||||||||| .......... .......... .......... ....TTATCA GATGAACCCC GCAAATTACA 298 GAGAAGCATT AGTTGAGATG CAAGCAGATG AGTCTGAAGG AGCTGATATT CTTCTTGTTA 51522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAGAAGCATT AGTTGAGATG CAAGCAGATG AGTCTGAAGG AGCTGATATT CTTCTT.... 354 GTATCACATT TGTTGTTCTG CAGAAATTTG GAAATATACT ATTCTTCTAA AGTTGCTGCT 51582 .......... .......... .......... .......... .......... .......... 354 GCTTCTTTTT TTTTTTTGGC ATATCAGGTT AAACCAGGTT TGCCTTATTT GGATATTATT 51642 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT AAACCAGGTT TGCCTTATTT GGATATTATT 387 AGGCTTCTTC GGGATAAATC TCCTTTGCCC ATAGCTGCCT ATCAGGTACT CAGATGTTCA 51702 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGGCTTCTTC GGGATAAATC TCCTTTGCCC ATAGCTGCCT ATCAG..... .......... 432 TTTAGTTTGT TTGTCATCAT CCTTTTTATA AGTAATCAAA GATTTTATAA ATGTTTGCAC 51762 .......... .......... .......... .......... .......... .......... 432 TAGCCACTGC GAGAAAACAT CGCTACTGAT TGTGCAGACT TCCTCTTGTA TCTAAAATTG 51822 .......... .......... .......... .......... .......... .......... 432 CATCAACATC CTGTACAGTA ACCAGGTTGC ACCAAAAAAC TAGCAAAATA ATACTGAATA 51882 .......... .......... .......... .......... .......... .......... 432 TCTTTGTATA AGGCTATGTA AATTTCTCCT ATGGCCTTAA AAAGTTCTTT CATTTCTTTC 51942 .......... .......... .......... .......... .......... .......... 432 AAGCCAAAAG TCCACCAACT GGCTTGAGGG ATGCAATGGA ACCCTAGTTT GTTTTTAAGT 52002 .......... .......... .......... .......... .......... .......... 432 TTGTGCTTAA GAAGAGTTGC TTCATATTCA GCATTGTCAT TTAGATGAGT TGCAATAATA 52062 .......... .......... .......... .......... .......... .......... 432 AGTCCAAAAA GTTCACTCAA GGGTTTTGAT GCTGCTGTGT GACAGATTTG AGATCTCTTC 52122 .......... .......... .......... .......... .......... .......... 432 AATTTACCTG CACGTTATTT TCTTTCTTGA ACAATATATT TGTCACGAAT TTTGGAATCT 52182 .......... .......... .......... .......... .......... .......... 432 GAAACCTTTG TACAGTCTAG ACTTGAGCTA TTGGTATGCA GAATTTAGGA AGATTTCTGG 52242 .......... .......... .......... .......... .......... .......... 432 GGCTCTATGC TCTCAGTATA TCTCGTCACC GCTGCACCTA GTTTTCTGAC TCTTGCCCAT 52302 .......... .......... .......... .......... .......... .......... 432 TTGTTTACAA GCACAAGGGA CTCTGAGGGT AAAGAAAACT CTTTTTCCTG ATAAATGACC 52362 .......... .......... .......... .......... .......... .......... 432 CCTTCTTCCA AATAGCTCTA AATGCTTTGC CAAGTGAATG ATTAAGAGTT CAAGACTTGT 52422 .......... .......... .......... .......... .......... .......... 432 TTTTGCAGAA TTGTTGAATC GTTCAGTTCT GTTAAATTTA ACAGTTTGAC AAAGTAGCAC 52482 .......... .......... .......... .......... .......... .......... 432 TCTGGTGTAT TGAATATAAT TGCTAGTGGA CTAATTCACA CACCATCAAG CATCATAGAG 52542 .......... .......... .......... .......... .......... .......... 432 AGCGTCTTTT CATCGTCATG CAAATTGGGA GTTCATTAAA CAAAAAAATG GAACTTGTGA 52602 .......... .......... .......... .......... .......... .......... 432 CATGACATAT CCATATTCTT TATATGATAC CCTATCATCG TCTTCTTTTA CAGTTTCTGG 52662 .......... .......... .......... .......... .......... .......... 432 TATCTGAAAA CCAATTTCTG CTAATATCCT TCTAGTTTTC GCCTTCATTT CTACACTATA 52722 .......... .......... .......... .......... .......... .......... 432 GTCTTCCAAC AGTTTCTCGG GTTTCTTTCT TCACAGGTTT CAGGTGAATA CTCGATGATC 52782 |||| |||||||||| |||||||||| .......... .......... .......... ......GTTT CAGGTGAATA CTCGATGATC 456 AAAGCAGGTG GGGTTCTAAA AATGATCGAT GAAGAAAGGG TTATGATGGA ATCATTGATG 52842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCAGGTG GGGTTCTAAA AATGATCGAT GAAGAAAGGG TTATGATGGA ATCATTGATG 516 TGCCTTCGAC GAGCTGGTGC TGACATAATT TTGACCTATT TTGCTC 52888 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGCCTTCGAC GAGCTGGTGC TGACATAATT TTGACCTATT TTGCTC 562 hqPGS_C08HBa0037O11.1+_SGN-E262555+ (49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 52888) ******************************************************************************** EST sequence 60 +strand 615 n (File: SGN-E319053+) 1 CAAAGTATGC AAGCTCCTTT TATGGACCTT TCAGAGAGGC TTTAGATTCA AATCCACGTT 61 TTGGAGATAA GAAAACTTAT CAGATGAACC CCGCAAATTA CAGAGAAGCA TTAGTTGAGA 121 TGCAAGCAGA TGAGTCTGAA GGAGCTGATA TTCTTCTTGT TAAACCAGGT TTGCCTTATT 181 TGGATATTAT TAGGCTTCTT CGGGATAAAT CTCCTTTGCC CATAGCTGCC TATCAGGTTT 241 CAGGTGAATA CTCGATGATC AAAGCAGGTG GGGTTCTAAA AATGATCGAT GAAGAAAGGG 301 TTATGATGGA ATCATTGATG TGCCTTCGAC GAGCTGGTGC TGACATAATT TTGACCTATT 361 TTGCTCTGCA AGCCGGTAGA TGCCTGTGTG GAGAGAAGAG GTAAAAGCTA GCCGGATCAT 421 AAAGGAATTT GAGACGAAGA AGATTTTCAA GTGAACTTTG TAAACTAGTT GGTGTGAGCT 481 TTGATTTAAA AAAGTAGCAG AACGACTATG TTAGCCGAGG GTCAACGGGA ACAAGTCAAT 541 CTCTCTACCT CACAAAGGTA GGGTAAGGTG TGCGTACATC CTACCCTCCC CAGATCCCAC 601 TTGTGGGACT ACACT Predicted gene structure (within gDNA segment 50630 to 53747): Exon 1 51270 51341 ( 72 n); cDNA 5 76 ( 72 n); score: 1.000 Intron 1 51342 51436 ( 95 n); Pd: 0.960 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 51437 51518 ( 82 n); cDNA 77 158 ( 82 n); score: 1.000 Intron 2 51519 51609 ( 91 n); Pd: 0.977 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 3 51610 51687 ( 78 n); cDNA 159 236 ( 78 n); score: 1.000 Intron 3 51688 52758 (1071 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 52759 53137 ( 379 n); cDNA 237 615 ( 379 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E319053+ 1.000 611 0.993 C PGS_C08HBa0037O11.1+_SGN-E319053+ (51270 51341,51437 51518,51610 51687,52759 53137) Alignment (genomic DNA sequence = upper lines): GTATGCAAGC TCCTTTTATG GACCTTTCAG AGAGGCTTTA GATTCAAATC CACGTTTTGG 51329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGCAAGC TCCTTTTATG GACCTTTCAG AGAGGCTTTA GATTCAAATC CACGTTTTGG 64 AGATAAGAAA ACGTACTGAA CAACAGGCTA TTATTATTTT CCTTTCATCA AATATCATTC 51389 |||||||||| || AGATAAGAAA AC........ .......... .......... .......... .......... 76 ATTATGTAGA CAAGATGAGT GTCTTTGAAC TTGGTTTTCA CATGCAGTTA TCAGATGAAC 51449 ||| |||||||||| .......... .......... .......... .......... .......TTA TCAGATGAAC 89 CCCGCAAATT ACAGAGAAGC ATTAGTTGAG ATGCAAGCAG ATGAGTCTGA AGGAGCTGAT 51509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGCAAATT ACAGAGAAGC ATTAGTTGAG ATGCAAGCAG ATGAGTCTGA AGGAGCTGAT 149 ATTCTTCTTG TTAGTATCAC ATTTGTTGTT CTGCAGAAAT TTGGAAATAT ACTATTCTTC 51569 ||||||||| ATTCTTCTT. .......... .......... .......... .......... .......... 158 TAAAGTTGCT GCTGCTTCTT TTTTTTTTTT GGCATATCAG GTTAAACCAG GTTTGCCTTA 51629 |||||||||| |||||||||| .......... .......... .......... .......... GTTAAACCAG GTTTGCCTTA 178 TTTGGATATT ATTAGGCTTC TTCGGGATAA ATCTCCTTTG CCCATAGCTG CCTATCAGGT 51689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGGATATT ATTAGGCTTC TTCGGGATAA ATCTCCTTTG CCCATAGCTG CCTATCAG.. 236 ACTCAGATGT TCATTTAGTT TGTTTGTCAT CATCCTTTTT ATAAGTAATC AAAGATTTTA 51749 .......... .......... .......... .......... .......... .......... 236 TAAATGTTTG CACTAGCCAC TGCGAGAAAA CATCGCTACT GATTGTGCAG ACTTCCTCTT 51809 .......... .......... .......... .......... .......... .......... 236 GTATCTAAAA TTGCATCAAC ATCCTGTACA GTAACCAGGT TGCACCAAAA AACTAGCAAA 51869 .......... .......... .......... .......... .......... .......... 236 ATAATACTGA ATATCTTTGT ATAAGGCTAT GTAAATTTCT CCTATGGCCT TAAAAAGTTC 51929 .......... .......... .......... .......... .......... .......... 236 TTTCATTTCT TTCAAGCCAA AAGTCCACCA ACTGGCTTGA GGGATGCAAT GGAACCCTAG 51989 .......... .......... .......... .......... .......... .......... 236 TTTGTTTTTA AGTTTGTGCT TAAGAAGAGT TGCTTCATAT TCAGCATTGT CATTTAGATG 52049 .......... .......... .......... .......... .......... .......... 236 AGTTGCAATA ATAAGTCCAA AAAGTTCACT CAAGGGTTTT GATGCTGCTG TGTGACAGAT 52109 .......... .......... .......... .......... .......... .......... 236 TTGAGATCTC TTCAATTTAC CTGCACGTTA TTTTCTTTCT TGAACAATAT ATTTGTCACG 52169 .......... .......... .......... .......... .......... .......... 236 AATTTTGGAA TCTGAAACCT TTGTACAGTC TAGACTTGAG CTATTGGTAT GCAGAATTTA 52229 .......... .......... .......... .......... .......... .......... 236 GGAAGATTTC TGGGGCTCTA TGCTCTCAGT ATATCTCGTC ACCGCTGCAC CTAGTTTTCT 52289 .......... .......... .......... .......... .......... .......... 236 GACTCTTGCC CATTTGTTTA CAAGCACAAG GGACTCTGAG GGTAAAGAAA ACTCTTTTTC 52349 .......... .......... .......... .......... .......... .......... 236 CTGATAAATG ACCCCTTCTT CCAAATAGCT CTAAATGCTT TGCCAAGTGA ATGATTAAGA 52409 .......... .......... .......... .......... .......... .......... 236 GTTCAAGACT TGTTTTTGCA GAATTGTTGA ATCGTTCAGT TCTGTTAAAT TTAACAGTTT 52469 .......... .......... .......... .......... .......... .......... 236 GACAAAGTAG CACTCTGGTG TATTGAATAT AATTGCTAGT GGACTAATTC ACACACCATC 52529 .......... .......... .......... .......... .......... .......... 236 AAGCATCATA GAGAGCGTCT TTTCATCGTC ATGCAAATTG GGAGTTCATT AAACAAAAAA 52589 .......... .......... .......... .......... .......... .......... 236 ATGGAACTTG TGACATGACA TATCCATATT CTTTATATGA TACCCTATCA TCGTCTTCTT 52649 .......... .......... .......... .......... .......... .......... 236 TTACAGTTTC TGGTATCTGA AAACCAATTT CTGCTAATAT CCTTCTAGTT TTCGCCTTCA 52709 .......... .......... .......... .......... .......... .......... 236 TTTCTACACT ATAGTCTTCC AACAGTTTCT CGGGTTTCTT TCTTCACAGG TTTCAGGTGA 52769 | |||||||||| .......... .......... .......... .......... .........G TTTCAGGTGA 247 ATACTCGATG ATCAAAGCAG GTGGGGTTCT AAAAATGATC GATGAAGAAA GGGTTATGAT 52829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTCGATG ATCAAAGCAG GTGGGGTTCT AAAAATGATC GATGAAGAAA GGGTTATGAT 307 GGAATCATTG ATGTGCCTTC GACGAGCTGG TGCTGACATA ATTTTGACCT ATTTTGCTCT 52889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATCATTG ATGTGCCTTC GACGAGCTGG TGCTGACATA ATTTTGACCT ATTTTGCTCT 367 GCAAGCCGGT AGATGCCTGT GTGGAGAGAA GAGGTAAAAG CTAGCCGGAT CATAAAGGAA 52949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGCCGGT AGATGCCTGT GTGGAGAGAA GAGGTAAAAG CTAGCCGGAT CATAAAGGAA 427 TTTGAGACGA AGAAGATTTT CAAGTGAACT TTGTAAACTA GTTGGTGTGA GCTTTGATTT 53009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGACGA AGAAGATTTT CAAGTGAACT TTGTAAACTA GTTGGTGTGA GCTTTGATTT 487 AAAAAAGTAG CAGAACGACT ATGTTAGCCG AGGGTCAACG GGAACAAGTC AATCTCTCTA 53069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAGTAG CAGAACGACT ATGTTAGCCG AGGGTCAACG GGAACAAGTC AATCTCTCTA 547 CCTCACAAAG GTAGGGTAAG GTGTGCGTAC ATCCTACCCT CCCCAGATCC CACTTGTGGG 53129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCACAAAG GTAGGGTAAG GTGTGCGTAC ATCCTACCCT CCCCAGATCC CACTTGTGGG 607 ACTACACT 53137 |||||||| ACTACACT 615 hqPGS_C08HBa0037O11.1+_SGN-E319053+ (51270 51341,51437 51518,51610 51687,52759 53137) ******************************************************************************** EST sequence 85 +strand 527 n (File: SGN-E279461+) 1 CAAGATGAGT GTCTTTGAAC TTGGTTTTCA CATGCAGTTA TCAGATGAAC CCCGCAAATT 61 ACAGAGAAGC ATTAGTTGAG ATGCAAGCAG ATGAGTCTGA AGGAGCTGAT ATTCTTCTTG 121 TTAAACCAGG TTTGCCTTAT TTGGATATTA TTAGGCTTCT TCGGGATAAA TCTCCTTTGC 181 CCATAGCTGC CTATCAGGTT TCAGGTGAAT ACTCGATGAT CAAAGCAGGT GGGGTTCTAA 241 AAATGATCGA TGAAGAAAGG GTTATGATGG AATCATTGAT GTGCCTTCGA CGAGCTGGTG 301 CTGACATAAT TTTGACCTAT TTTGCTCTGC AAGCCGGTAG ATGCCTGTGT GGAGAGAAGA 361 GGTAAAAGCT AGCCGGATCA TAAAGGAATT TGAGACGAAG AAGATTTTCA AGTGAACTTT 421 GTAAACTAGT TGGTGTGAGC TTTGATTTAA AAAAGTAGCA GAACGACTAT GTTAGCCGAG 481 GGTCAACGGG AACAAGTCAA TCTCTCTACC TCACAAAGGT AGGGTAA Predicted gene structure (within gDNA segment 50800 to 53698): Exon 1 51400 51518 ( 119 n); cDNA 1 119 ( 119 n); score: 1.000 Intron 1 51519 51609 ( 91 n); Pd: 0.977 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 2 51610 51687 ( 78 n); cDNA 120 197 ( 78 n); score: 1.000 Intron 2 51688 52758 (1071 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 52759 53088 ( 330 n); cDNA 198 527 ( 330 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E279461+ 1.000 527 1.000 C PGS_C08HBa0037O11.1+_SGN-E279461+ (51400 51518,51610 51687,52759 53088) Alignment (genomic DNA sequence = upper lines): CAAGATGAGT GTCTTTGAAC TTGGTTTTCA CATGCAGTTA TCAGATGAAC CCCGCAAATT 51459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATGAGT GTCTTTGAAC TTGGTTTTCA CATGCAGTTA TCAGATGAAC CCCGCAAATT 60 ACAGAGAAGC ATTAGTTGAG ATGCAAGCAG ATGAGTCTGA AGGAGCTGAT ATTCTTCTTG 51519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACAGAGAAGC ATTAGTTGAG ATGCAAGCAG ATGAGTCTGA AGGAGCTGAT ATTCTTCTT. 119 TTAGTATCAC ATTTGTTGTT CTGCAGAAAT TTGGAAATAT ACTATTCTTC TAAAGTTGCT 51579 .......... .......... .......... .......... .......... .......... 119 GCTGCTTCTT TTTTTTTTTT GGCATATCAG GTTAAACCAG GTTTGCCTTA TTTGGATATT 51639 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTAAACCAG GTTTGCCTTA TTTGGATATT 149 ATTAGGCTTC TTCGGGATAA ATCTCCTTTG CCCATAGCTG CCTATCAGGT ACTCAGATGT 51699 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATTAGGCTTC TTCGGGATAA ATCTCCTTTG CCCATAGCTG CCTATCAG.. .......... 197 TCATTTAGTT TGTTTGTCAT CATCCTTTTT ATAAGTAATC AAAGATTTTA TAAATGTTTG 51759 .......... .......... .......... .......... .......... .......... 197 CACTAGCCAC TGCGAGAAAA CATCGCTACT GATTGTGCAG ACTTCCTCTT GTATCTAAAA 51819 .......... .......... .......... .......... .......... .......... 197 TTGCATCAAC ATCCTGTACA GTAACCAGGT TGCACCAAAA AACTAGCAAA ATAATACTGA 51879 .......... .......... .......... .......... .......... .......... 197 ATATCTTTGT ATAAGGCTAT GTAAATTTCT CCTATGGCCT TAAAAAGTTC TTTCATTTCT 51939 .......... .......... .......... .......... .......... .......... 197 TTCAAGCCAA AAGTCCACCA ACTGGCTTGA GGGATGCAAT GGAACCCTAG TTTGTTTTTA 51999 .......... .......... .......... .......... .......... .......... 197 AGTTTGTGCT TAAGAAGAGT TGCTTCATAT TCAGCATTGT CATTTAGATG AGTTGCAATA 52059 .......... .......... .......... .......... .......... .......... 197 ATAAGTCCAA AAAGTTCACT CAAGGGTTTT GATGCTGCTG TGTGACAGAT TTGAGATCTC 52119 .......... .......... .......... .......... .......... .......... 197 TTCAATTTAC CTGCACGTTA TTTTCTTTCT TGAACAATAT ATTTGTCACG AATTTTGGAA 52179 .......... .......... .......... .......... .......... .......... 197 TCTGAAACCT TTGTACAGTC TAGACTTGAG CTATTGGTAT GCAGAATTTA GGAAGATTTC 52239 .......... .......... .......... .......... .......... .......... 197 TGGGGCTCTA TGCTCTCAGT ATATCTCGTC ACCGCTGCAC CTAGTTTTCT GACTCTTGCC 52299 .......... .......... .......... .......... .......... .......... 197 CATTTGTTTA CAAGCACAAG GGACTCTGAG GGTAAAGAAA ACTCTTTTTC CTGATAAATG 52359 .......... .......... .......... .......... .......... .......... 197 ACCCCTTCTT CCAAATAGCT CTAAATGCTT TGCCAAGTGA ATGATTAAGA GTTCAAGACT 52419 .......... .......... .......... .......... .......... .......... 197 TGTTTTTGCA GAATTGTTGA ATCGTTCAGT TCTGTTAAAT TTAACAGTTT GACAAAGTAG 52479 .......... .......... .......... .......... .......... .......... 197 CACTCTGGTG TATTGAATAT AATTGCTAGT GGACTAATTC ACACACCATC AAGCATCATA 52539 .......... .......... .......... .......... .......... .......... 197 GAGAGCGTCT TTTCATCGTC ATGCAAATTG GGAGTTCATT AAACAAAAAA ATGGAACTTG 52599 .......... .......... .......... .......... .......... .......... 197 TGACATGACA TATCCATATT CTTTATATGA TACCCTATCA TCGTCTTCTT TTACAGTTTC 52659 .......... .......... .......... .......... .......... .......... 197 TGGTATCTGA AAACCAATTT CTGCTAATAT CCTTCTAGTT TTCGCCTTCA TTTCTACACT 52719 .......... .......... .......... .......... .......... .......... 197 ATAGTCTTCC AACAGTTTCT CGGGTTTCTT TCTTCACAGG TTTCAGGTGA ATACTCGATG 52779 | |||||||||| |||||||||| .......... .......... .......... .........G TTTCAGGTGA ATACTCGATG 218 ATCAAAGCAG GTGGGGTTCT AAAAATGATC GATGAAGAAA GGGTTATGAT GGAATCATTG 52839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGCAG GTGGGGTTCT AAAAATGATC GATGAAGAAA GGGTTATGAT GGAATCATTG 278 ATGTGCCTTC GACGAGCTGG TGCTGACATA ATTTTGACCT ATTTTGCTCT GCAAGCCGGT 52899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGCCTTC GACGAGCTGG TGCTGACATA ATTTTGACCT ATTTTGCTCT GCAAGCCGGT 338 AGATGCCTGT GTGGAGAGAA GAGGTAAAAG CTAGCCGGAT CATAAAGGAA TTTGAGACGA 52959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCCTGT GTGGAGAGAA GAGGTAAAAG CTAGCCGGAT CATAAAGGAA TTTGAGACGA 398 AGAAGATTTT CAAGTGAACT TTGTAAACTA GTTGGTGTGA GCTTTGATTT AAAAAAGTAG 53019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGATTTT CAAGTGAACT TTGTAAACTA GTTGGTGTGA GCTTTGATTT AAAAAAGTAG 458 CAGAACGACT ATGTTAGCCG AGGGTCAACG GGAACAAGTC AATCTCTCTA CCTCACAAAG 53079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAACGACT ATGTTAGCCG AGGGTCAACG GGAACAAGTC AATCTCTCTA CCTCACAAAG 518 GTAGGGTAA 53088 ||||||||| GTAGGGTAA 527 hqPGS_C08HBa0037O11.1+_SGN-E279461+ (51400 51518,51610 51687,52759 53088) ******************************************************************************** EST sequence 72 +strand 527 n (File: SGN-E345493+) 1 TTATTTGGAT ATTATTAGGC TTCTTCGGGA TAAATCTCCT TTGCCCATAG CTGCCTATCA 61 GGTTTCAGGT GAATACTCGA TGATCAAAGC AGGTGGGGTT CTAAAAATGA TCGATGAAGA 121 AAGGGTTATG ATGGAATCAT TGATGTGCCT TCGACGAGCT GGTGCTGACA TAATTTTGAC 181 CTATTTTGCT CTGCAAGCCG GTAGATGCCT GTGTGGAGAG AAGAGGTAAA AGCTAGCCGG 241 ATCATAAAGG AATTTGAGAC GAAGAAGATT TTCAAGTGAA CTTTGTAAAC TAGTTGGTGT 301 GAGCTTTGAT TTAAAAAAGT AGCAGAACGA CTATGTTAGC CGAGGGTCAA CGGGAACAAG 361 TCAATCTCTC TACCTCACAA AGGTAGGGTA AGGTGTGCGT ACATCCTACC CTCCCCAGAT 421 CCCACTTGTG GGACTACACT GGGTATGTGT TGTAATTGAG TACGTTGTGT CTCTATTTTC 481 TTGTTTACTC AAGCACCAAA TTTGTTTAGA TTATTTGATG TGAGCTT Predicted gene structure (within gDNA segment 51027 to 53834): Exon 1 51627 51687 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 51688 52758 (1071 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 52759 53224 ( 466 n); cDNA 62 527 ( 466 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E345493+ 1.000 527 1.000 C PGS_C08HBa0037O11.1+_SGN-E345493+ (51627 51687,52759 53224) Alignment (genomic DNA sequence = upper lines): TTATTTGGAT ATTATTAGGC TTCTTCGGGA TAAATCTCCT TTGCCCATAG CTGCCTATCA 51686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTTGGAT ATTATTAGGC TTCTTCGGGA TAAATCTCCT TTGCCCATAG CTGCCTATCA 60 GGTACTCAGA TGTTCATTTA GTTTGTTTGT CATCATCCTT TTTATAAGTA ATCAAAGATT 51746 | G......... .......... .......... .......... .......... .......... 61 TTATAAATGT TTGCACTAGC CACTGCGAGA AAACATCGCT ACTGATTGTG CAGACTTCCT 51806 .......... .......... .......... .......... .......... .......... 61 CTTGTATCTA AAATTGCATC AACATCCTGT ACAGTAACCA GGTTGCACCA AAAAACTAGC 51866 .......... .......... .......... .......... .......... .......... 61 AAAATAATAC TGAATATCTT TGTATAAGGC TATGTAAATT TCTCCTATGG CCTTAAAAAG 51926 .......... .......... .......... .......... .......... .......... 61 TTCTTTCATT TCTTTCAAGC CAAAAGTCCA CCAACTGGCT TGAGGGATGC AATGGAACCC 51986 .......... .......... .......... .......... .......... .......... 61 TAGTTTGTTT TTAAGTTTGT GCTTAAGAAG AGTTGCTTCA TATTCAGCAT TGTCATTTAG 52046 .......... .......... .......... .......... .......... .......... 61 ATGAGTTGCA ATAATAAGTC CAAAAAGTTC ACTCAAGGGT TTTGATGCTG CTGTGTGACA 52106 .......... .......... .......... .......... .......... .......... 61 GATTTGAGAT CTCTTCAATT TACCTGCACG TTATTTTCTT TCTTGAACAA TATATTTGTC 52166 .......... .......... .......... .......... .......... .......... 61 ACGAATTTTG GAATCTGAAA CCTTTGTACA GTCTAGACTT GAGCTATTGG TATGCAGAAT 52226 .......... .......... .......... .......... .......... .......... 61 TTAGGAAGAT TTCTGGGGCT CTATGCTCTC AGTATATCTC GTCACCGCTG CACCTAGTTT 52286 .......... .......... .......... .......... .......... .......... 61 TCTGACTCTT GCCCATTTGT TTACAAGCAC AAGGGACTCT GAGGGTAAAG AAAACTCTTT 52346 .......... .......... .......... .......... .......... .......... 61 TTCCTGATAA ATGACCCCTT CTTCCAAATA GCTCTAAATG CTTTGCCAAG TGAATGATTA 52406 .......... .......... .......... .......... .......... .......... 61 AGAGTTCAAG ACTTGTTTTT GCAGAATTGT TGAATCGTTC AGTTCTGTTA AATTTAACAG 52466 .......... .......... .......... .......... .......... .......... 61 TTTGACAAAG TAGCACTCTG GTGTATTGAA TATAATTGCT AGTGGACTAA TTCACACACC 52526 .......... .......... .......... .......... .......... .......... 61 ATCAAGCATC ATAGAGAGCG TCTTTTCATC GTCATGCAAA TTGGGAGTTC ATTAAACAAA 52586 .......... .......... .......... .......... .......... .......... 61 AAAATGGAAC TTGTGACATG ACATATCCAT ATTCTTTATA TGATACCCTA TCATCGTCTT 52646 .......... .......... .......... .......... .......... .......... 61 CTTTTACAGT TTCTGGTATC TGAAAACCAA TTTCTGCTAA TATCCTTCTA GTTTTCGCCT 52706 .......... .......... .......... .......... .......... .......... 61 TCATTTCTAC ACTATAGTCT TCCAACAGTT TCTCGGGTTT CTTTCTTCAC AGGTTTCAGG 52766 |||||||| .......... .......... .......... .......... .......... ..GTTTCAGG 69 TGAATACTCG ATGATCAAAG CAGGTGGGGT TCTAAAAATG ATCGATGAAG AAAGGGTTAT 52826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATACTCG ATGATCAAAG CAGGTGGGGT TCTAAAAATG ATCGATGAAG AAAGGGTTAT 129 GATGGAATCA TTGATGTGCC TTCGACGAGC TGGTGCTGAC ATAATTTTGA CCTATTTTGC 52886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGAATCA TTGATGTGCC TTCGACGAGC TGGTGCTGAC ATAATTTTGA CCTATTTTGC 189 TCTGCAAGCC GGTAGATGCC TGTGTGGAGA GAAGAGGTAA AAGCTAGCCG GATCATAAAG 52946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCAAGCC GGTAGATGCC TGTGTGGAGA GAAGAGGTAA AAGCTAGCCG GATCATAAAG 249 GAATTTGAGA CGAAGAAGAT TTTCAAGTGA ACTTTGTAAA CTAGTTGGTG TGAGCTTTGA 53006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTGAGA CGAAGAAGAT TTTCAAGTGA ACTTTGTAAA CTAGTTGGTG TGAGCTTTGA 309 TTTAAAAAAG TAGCAGAACG ACTATGTTAG CCGAGGGTCA ACGGGAACAA GTCAATCTCT 53066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAAAAAG TAGCAGAACG ACTATGTTAG CCGAGGGTCA ACGGGAACAA GTCAATCTCT 369 CTACCTCACA AAGGTAGGGT AAGGTGTGCG TACATCCTAC CCTCCCCAGA TCCCACTTGT 53126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACCTCACA AAGGTAGGGT AAGGTGTGCG TACATCCTAC CCTCCCCAGA TCCCACTTGT 429 GGGACTACAC TGGGTATGTG TTGTAATTGA GTACGTTGTG TCTCTATTTT CTTGTTTACT 53186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGACTACAC TGGGTATGTG TTGTAATTGA GTACGTTGTG TCTCTATTTT CTTGTTTACT 489 CAAGCACCAA ATTTGTTTAG ATTATTTGAT GTGAGCTT 53224 |||||||||| |||||||||| |||||||||| |||||||| CAAGCACCAA ATTTGTTTAG ATTATTTGAT GTGAGCTT 527 hqPGS_C08HBa0037O11.1+_SGN-E345493+ (51627 51687,52759 53224) ******************************************************************************** EST sequence 102 -strand 775 n (File: SGN-E537873-) 1 TTCGACTGAA CTGATACTGA AAGTAGGATA CCACCAACAG TCTTCTCCTC TGCAGTCTTA 61 ATCTTCACCA AGACTCTGTC GCCCAAAGGC TTAAGTGTAG TGTACTTAGG AGCTACGGTG 121 GTAGCCGCCT TGACAACAAG ACGACTAAAA GACCTGCTGT TGTTGTGCTT CAAAGGAGCA 181 AAAGATACGG TCTTTACAAT GCAAGTGGAC CTGAGCCCTT CAAAGGATGC AAAACCATTG 241 CCAGAGATAG AGGATGCTGT TAGCTGAGTG GACGCCATTT TTTTTCTGAA TTTGGATAAG 301 TTTTTTCTTC TTCTCAACTG GAGTAAATTG TTGGAAATAT GAGAAGAGGT AAAAGCTAGC 361 CGGATCATAA AGGAATTTGA GACGAAGAAG ATTTTCAAGT GAACTTTGTA AACTAGTTGG 421 TGTGAGCTTT GATTTAAAAA AGTAGCAGAA CGACTATGTT AGCCGAGGGT CAACGGGAAC 481 AAGTCAATCT CTCTACCTCA CAAAGGTAGG GTAAGGTGTG CGTACATCCT ACCCTCCCCA 541 GATCCCACTT GTGGGACTAC ACTGGGTATG TGTTGTAATT GAGTACGTTG TGTCTCTATT 601 TTCTTGTTTA CTCAAGCACC AAATTTGTTT AGATTATTTG ATGTGAGCTT GATTTAGAGG 661 ATTCCCTTTG TAACCATTTT GTTCATTTCC TAGCTCTAAC ATTTTGAAGT TATTAATGAA 721 AAAAATAAAA ATAAAAAGAT GAGTAAAAAT TGTTTCAACT TAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 48905 to 54066): Exon 1 50676 50705 ( 30 n); cDNA 289 317 ( 29 n); score: 0.633 Intron 1 50706 51252 ( 547 n); Pd: 0.000 (s: 0), Pa: 0.797 (s: 0) Exon 2 51253 51269 ( 17 n); cDNA 318 333 ( 16 n); score: 0.647 Intron 2 51270 51609 ( 340 n); Pd: 0.628 (s: 0), Pa: 0.986 (s: 0) Exon 3 51610 51619 ( 10 n); cDNA 334 343 ( 10 n); score: 0.500 Intron 3 51620 52917 (1298 n); Pd: 0.156 (s: 0), Pa: 0.000 (s: 1.00) Exon 4 52918 53336 ( 419 n); cDNA 344 762 ( 419 n); score: 1.000 PPA cDNA 763 775 MATCH C08HBa0037O11.1+ SGN-E537873- 1.000 476 0.614 C PGS_C08HBa0037O11.1+_SGN-E537873- (50676 50705,51253 51269,51610 51619,52918 53336) Alignment (genomic DNA sequence = upper lines): AATCTTGTTA TTTCTCTTCT TTTATCTTAG GCCAGAGCAG GAGCAGATGT TGTCAGTCCA 50735 ||| | | || | | |||| | | ||| | AATTTGGATA AGTTTTTTCT TCT-TCTCAA .......... .......... .......... 317 AGTGACATGA TGGATGGTCG TGTCGGAGCA ATTCGAGCAG CTCTTGATGC TGAAGGATTT 50795 .......... .......... .......... .......... .......... .......... 317 CAGCATGTGT CAATCATGTC ATATACGGCA AAGTAATTTT CAGAACTCAT AAGTTCTGTC 50855 .......... .......... .......... .......... .......... .......... 317 AATGTAGATA TTATATATAA GTCCTGGAAA TATTTAGTTG TTTGCAGATA GATTCAGTAT 50915 .......... .......... .......... .......... .......... .......... 317 TCAATAGATT CAGTATTCAA TGAGGCCATT TTTCTATGTT TGTGCTTTAC CCCTCTTGTA 50975 .......... .......... .......... .......... .......... .......... 317 TATTGAGAAG TATATCTTAC ATCTTAGATC AAAGCCTAAA TGGGTTAGCA TCATCATATG 51035 .......... .......... .......... .......... .......... .......... 317 GTAACTTCTC ATTTTATTTT TTAATGTAAG CACTCAGAGG CAGCTAAAGA TCTTATTCTT 51095 .......... .......... .......... .......... .......... .......... 317 TTCATGTAAG AGAATTTGGT GATCAGTCTC TCCAATGGTT CCGGATATTA TTGGTCTAAG 51155 .......... .......... .......... .......... .......... .......... 317 AACTTAGAAC TCAGAGCTTT GTTTATTTTA TTTTTTTGCT TTTATGGATT CTTTAATATT 51215 .......... .......... .......... .......... .......... .......... 317 GAAACTCAAC TTCCATCTTT TTTTTTTGAC TTGTTAGCTT GAATTATATT GCAGGTATGC 51275 | | | | || ||| | | .......... .......... .......... .......C-T GGAGTAAATT GTTG...... 333 AAGCTCCTTT TATGGACCTT TCAGAGAGGC TTTAGATTCA AATCCACGTT TTGGAGATAA 51335 .......... .......... .......... .......... .......... .......... 333 GAAAACGTAC TGAACAACAG GCTATTATTA TTTTCCTTTC ATCAAATATC ATTCATTATG 51395 .......... .......... .......... .......... .......... .......... 333 TAGACAAGAT GAGTGTCTTT GAACTTGGTT TTCACATGCA GTTATCAGAT GAACCCCGCA 51455 .......... .......... .......... .......... .......... .......... 333 AATTACAGAG AAGCATTAGT TGAGATGCAA GCAGATGAGT CTGAAGGAGC TGATATTCTT 51515 .......... .......... .......... .......... .......... .......... 333 CTTGTTAGTA TCACATTTGT TGTTCTGCAG AAATTTGGAA ATATACTATT CTTCTAAAGT 51575 .......... .......... .......... .......... .......... .......... 333 TGCTGCTGCT TCTTTTTTTT TTTTGGCATA TCAGGTTAAA CCAGGTTTGC CTTATTTGGA 51635 | | | || .......... .......... .......... ....GAAATA TGAG...... .......... 343 TATTATTAGG CTTCTTCGGG ATAAATCTCC TTTGCCCATA GCTGCCTATC AGGTACTCAG 51695 .......... .......... .......... .......... .......... .......... 343 ATGTTCATTT AGTTTGTTTG TCATCATCCT TTTTATAAGT AATCAAAGAT TTTATAAATG 51755 .......... .......... .......... .......... .......... .......... 343 TTTGCACTAG CCACTGCGAG AAAACATCGC TACTGATTGT GCAGACTTCC TCTTGTATCT 51815 .......... .......... .......... .......... .......... .......... 343 AAAATTGCAT CAACATCCTG TACAGTAACC AGGTTGCACC AAAAAACTAG CAAAATAATA 51875 .......... .......... .......... .......... .......... .......... 343 CTGAATATCT TTGTATAAGG CTATGTAAAT TTCTCCTATG GCCTTAAAAA GTTCTTTCAT 51935 .......... .......... .......... .......... .......... .......... 343 TTCTTTCAAG CCAAAAGTCC ACCAACTGGC TTGAGGGATG CAATGGAACC CTAGTTTGTT 51995 .......... .......... .......... .......... .......... .......... 343 TTTAAGTTTG TGCTTAAGAA GAGTTGCTTC ATATTCAGCA TTGTCATTTA GATGAGTTGC 52055 .......... .......... .......... .......... .......... .......... 343 AATAATAAGT CCAAAAAGTT CACTCAAGGG TTTTGATGCT GCTGTGTGAC AGATTTGAGA 52115 .......... .......... .......... .......... .......... .......... 343 TCTCTTCAAT TTACCTGCAC GTTATTTTCT TTCTTGAACA ATATATTTGT CACGAATTTT 52175 .......... .......... .......... .......... .......... .......... 343 GGAATCTGAA ACCTTTGTAC AGTCTAGACT TGAGCTATTG GTATGCAGAA TTTAGGAAGA 52235 .......... .......... .......... .......... .......... .......... 343 TTTCTGGGGC TCTATGCTCT CAGTATATCT CGTCACCGCT GCACCTAGTT TTCTGACTCT 52295 .......... .......... .......... .......... .......... .......... 343 TGCCCATTTG TTTACAAGCA CAAGGGACTC TGAGGGTAAA GAAAACTCTT TTTCCTGATA 52355 .......... .......... .......... .......... .......... .......... 343 AATGACCCCT TCTTCCAAAT AGCTCTAAAT GCTTTGCCAA GTGAATGATT AAGAGTTCAA 52415 .......... .......... .......... .......... .......... .......... 343 GACTTGTTTT TGCAGAATTG TTGAATCGTT CAGTTCTGTT AAATTTAACA GTTTGACAAA 52475 .......... .......... .......... .......... .......... .......... 343 GTAGCACTCT GGTGTATTGA ATATAATTGC TAGTGGACTA ATTCACACAC CATCAAGCAT 52535 .......... .......... .......... .......... .......... .......... 343 CATAGAGAGC GTCTTTTCAT CGTCATGCAA ATTGGGAGTT CATTAAACAA AAAAATGGAA 52595 .......... .......... .......... .......... .......... .......... 343 CTTGTGACAT GACATATCCA TATTCTTTAT ATGATACCCT ATCATCGTCT TCTTTTACAG 52655 .......... .......... .......... .......... .......... .......... 343 TTTCTGGTAT CTGAAAACCA ATTTCTGCTA ATATCCTTCT AGTTTTCGCC TTCATTTCTA 52715 .......... .......... .......... .......... .......... .......... 343 CACTATAGTC TTCCAACAGT TTCTCGGGTT TCTTTCTTCA CAGGTTTCAG GTGAATACTC 52775 .......... .......... .......... .......... .......... .......... 343 GATGATCAAA GCAGGTGGGG TTCTAAAAAT GATCGATGAA GAAAGGGTTA TGATGGAATC 52835 .......... .......... .......... .......... .......... .......... 343 ATTGATGTGC CTTCGACGAG CTGGTGCTGA CATAATTTTG ACCTATTTTG CTCTGCAAGC 52895 .......... .......... .......... .......... .......... .......... 343 CGGTAGATGC CTGTGTGGAG AGAAGAGGTA AAAGCTAGCC GGATCATAAA GGAATTTGAG 52955 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..AAGAGGTA AAAGCTAGCC GGATCATAAA GGAATTTGAG 381 ACGAAGAAGA TTTTCAAGTG AACTTTGTAA ACTAGTTGGT GTGAGCTTTG ATTTAAAAAA 53015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAAGA TTTTCAAGTG AACTTTGTAA ACTAGTTGGT GTGAGCTTTG ATTTAAAAAA 441 GTAGCAGAAC GACTATGTTA GCCGAGGGTC AACGGGAACA AGTCAATCTC TCTACCTCAC 53075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAGAAC GACTATGTTA GCCGAGGGTC AACGGGAACA AGTCAATCTC TCTACCTCAC 501 AAAGGTAGGG TAAGGTGTGC GTACATCCTA CCCTCCCCAG ATCCCACTTG TGGGACTACA 53135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTAGGG TAAGGTGTGC GTACATCCTA CCCTCCCCAG ATCCCACTTG TGGGACTACA 561 CTGGGTATGT GTTGTAATTG AGTACGTTGT GTCTCTATTT TCTTGTTTAC TCAAGCACCA 53195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGTATGT GTTGTAATTG AGTACGTTGT GTCTCTATTT TCTTGTTTAC TCAAGCACCA 621 AATTTGTTTA GATTATTTGA TGTGAGCTTG ATTTAGAGGA TTCCCTTTGT AACCATTTTG 53255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGTTTA GATTATTTGA TGTGAGCTTG ATTTAGAGGA TTCCCTTTGT AACCATTTTG 681 TTCATTTCCT AGCTCTAACA TTTTGAAGTT ATTAATGAAA AAAATAAAAA TAAAAAGATG 53315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTTCCT AGCTCTAACA TTTTGAAGTT ATTAATGAAA AAAATAAAAA TAAAAAGATG 741 AGTAAAAATT GTTTCAACTT A 53336 |||||||||| |||||||||| | AGTAAAAATT GTTTCAACTT A 762 hqPGS_C08HBa0037O11.1+_SGN-E537873- (52918 53336) ******************************************************************************** EST sequence 121 -strand 554 n (File: SGN-E265409-) 1 CAAAGGATGC AAAACCATTG CCAGAGATAG AGGATGCTGT TAGCTGAGTG GACGCCATTT 61 TTTTTCTGAA TTTGGATAAG TTTTTTCTTC TTCTCAACTG GAGTAAATTG TTGGAAATAT 121 GAGAAGAGGT AAAAGCTAGC CGGATCATAA AGGAATTTGA GACGAAGAAG ATTTTCAAGT 181 GAACTTTGTA AACTAGTTGG TGTGAGCTTT GATTTAAAAA AGTAGCAGAA CGACTATGTT 241 AGCCGAGGGT CAACGGGAAC AAGTCAATCT CTCTACCTCA CAAAGGTAGG GTAAGGTGTG 301 CGTACATCCT ACCCTCCCCA GATCCCACTT GTGGGACTAC ACTGGGTATG TGTTGTAATT 361 GAGTACGTTG TGTCTCTATT TTCTTGTTTA CTCAAGCACC AAATTTGTTT AGATTATTTG 421 ATGTGAGCTT GATTTAGAGG ATTCCCTTTG TAACCATTTT GTTCATTTCC TAGCTCTAAC 481 ATTTTGAAGT TATTAATGAA AAAAATAAAA ATAAAAAGAT GAGTAAAAAT TGTTTCAACT 541 TAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 49905 to 54056): Exon 1 51088 51100 ( 13 n); cDNA 85 97 ( 13 n); score: 0.769 Intron 1 51101 51252 ( 152 n); Pd: 0.442 (s: 0), Pa: 0.797 (s: 0) Exon 2 51253 51269 ( 17 n); cDNA 98 113 ( 16 n); score: 0.647 Intron 2 51270 51609 ( 340 n); Pd: 0.628 (s: 0), Pa: 0.986 (s: 0) Exon 3 51610 51619 ( 10 n); cDNA 114 123 ( 10 n); score: 0.500 Intron 3 51620 52917 (1298 n); Pd: 0.156 (s: 0), Pa: 0.000 (s: 1.00) Exon 4 52918 53336 ( 419 n); cDNA 124 542 ( 419 n); score: 1.000 PPA cDNA 543 554 MATCH C08HBa0037O11.1+ SGN-E265409- 1.000 459 0.829 C PGS_C08HBa0037O11.1+_SGN-E265409- (51088 51100,51253 51269,51610 51619,52918 53336) Alignment (genomic DNA sequence = upper lines): TTATTCTTTT CATGTAAGAG AATTTGGTGA TCAGTCTCTC CAATGGTTCC GGATATTATT 51147 || ||||| | || TTCTTCTTCT CAA....... .......... .......... .......... .......... 97 GGTCTAAGAA CTTAGAACTC AGAGCTTTGT TTATTTTATT TTTTTGCTTT TATGGATTCT 51207 .......... .......... .......... .......... .......... .......... 97 TTAATATTGA AACTCAACTT CCATCTTTTT TTTTTGACTT GTTAGCTTGA ATTATATTGC 51267 | || | || |||| .......... .......... .......... .......... .....C-TGG AGTAAATTGT 111 AGGTATGCAA GCTCCTTTTA TGGACCTTTC AGAGAGGCTT TAGATTCAAA TCCACGTTTT 51327 | TG........ .......... .......... .......... .......... .......... 113 GGAGATAAGA AAACGTACTG AACAACAGGC TATTATTATT TTCCTTTCAT CAAATATCAT 51387 .......... .......... .......... .......... .......... .......... 113 TCATTATGTA GACAAGATGA GTGTCTTTGA ACTTGGTTTT CACATGCAGT TATCAGATGA 51447 .......... .......... .......... .......... .......... .......... 113 ACCCCGCAAA TTACAGAGAA GCATTAGTTG AGATGCAAGC AGATGAGTCT GAAGGAGCTG 51507 .......... .......... .......... .......... .......... .......... 113 ATATTCTTCT TGTTAGTATC ACATTTGTTG TTCTGCAGAA ATTTGGAAAT ATACTATTCT 51567 .......... .......... .......... .......... .......... .......... 113 TCTAAAGTTG CTGCTGCTTC TTTTTTTTTT TTGGCATATC AGGTTAAACC AGGTTTGCCT 51627 | | | || .......... .......... .......... .......... ..GAAATATG AG........ 123 TATTTGGATA TTATTAGGCT TCTTCGGGAT AAATCTCCTT TGCCCATAGC TGCCTATCAG 51687 .......... .......... .......... .......... .......... .......... 123 GTACTCAGAT GTTCATTTAG TTTGTTTGTC ATCATCCTTT TTATAAGTAA TCAAAGATTT 51747 .......... .......... .......... .......... .......... .......... 123 TATAAATGTT TGCACTAGCC ACTGCGAGAA AACATCGCTA CTGATTGTGC AGACTTCCTC 51807 .......... .......... .......... .......... .......... .......... 123 TTGTATCTAA AATTGCATCA ACATCCTGTA CAGTAACCAG GTTGCACCAA AAAACTAGCA 51867 .......... .......... .......... .......... .......... .......... 123 AAATAATACT GAATATCTTT GTATAAGGCT ATGTAAATTT CTCCTATGGC CTTAAAAAGT 51927 .......... .......... .......... .......... .......... .......... 123 TCTTTCATTT CTTTCAAGCC AAAAGTCCAC CAACTGGCTT GAGGGATGCA ATGGAACCCT 51987 .......... .......... .......... .......... .......... .......... 123 AGTTTGTTTT TAAGTTTGTG CTTAAGAAGA GTTGCTTCAT ATTCAGCATT GTCATTTAGA 52047 .......... .......... .......... .......... .......... .......... 123 TGAGTTGCAA TAATAAGTCC AAAAAGTTCA CTCAAGGGTT TTGATGCTGC TGTGTGACAG 52107 .......... .......... .......... .......... .......... .......... 123 ATTTGAGATC TCTTCAATTT ACCTGCACGT TATTTTCTTT CTTGAACAAT ATATTTGTCA 52167 .......... .......... .......... .......... .......... .......... 123 CGAATTTTGG AATCTGAAAC CTTTGTACAG TCTAGACTTG AGCTATTGGT ATGCAGAATT 52227 .......... .......... .......... .......... .......... .......... 123 TAGGAAGATT TCTGGGGCTC TATGCTCTCA GTATATCTCG TCACCGCTGC ACCTAGTTTT 52287 .......... .......... .......... .......... .......... .......... 123 CTGACTCTTG CCCATTTGTT TACAAGCACA AGGGACTCTG AGGGTAAAGA AAACTCTTTT 52347 .......... .......... .......... .......... .......... .......... 123 TCCTGATAAA TGACCCCTTC TTCCAAATAG CTCTAAATGC TTTGCCAAGT GAATGATTAA 52407 .......... .......... .......... .......... .......... .......... 123 GAGTTCAAGA CTTGTTTTTG CAGAATTGTT GAATCGTTCA GTTCTGTTAA ATTTAACAGT 52467 .......... .......... .......... .......... .......... .......... 123 TTGACAAAGT AGCACTCTGG TGTATTGAAT ATAATTGCTA GTGGACTAAT TCACACACCA 52527 .......... .......... .......... .......... .......... .......... 123 TCAAGCATCA TAGAGAGCGT CTTTTCATCG TCATGCAAAT TGGGAGTTCA TTAAACAAAA 52587 .......... .......... .......... .......... .......... .......... 123 AAATGGAACT TGTGACATGA CATATCCATA TTCTTTATAT GATACCCTAT CATCGTCTTC 52647 .......... .......... .......... .......... .......... .......... 123 TTTTACAGTT TCTGGTATCT GAAAACCAAT TTCTGCTAAT ATCCTTCTAG TTTTCGCCTT 52707 .......... .......... .......... .......... .......... .......... 123 CATTTCTACA CTATAGTCTT CCAACAGTTT CTCGGGTTTC TTTCTTCACA GGTTTCAGGT 52767 .......... .......... .......... .......... .......... .......... 123 GAATACTCGA TGATCAAAGC AGGTGGGGTT CTAAAAATGA TCGATGAAGA AAGGGTTATG 52827 .......... .......... .......... .......... .......... .......... 123 ATGGAATCAT TGATGTGCCT TCGACGAGCT GGTGCTGACA TAATTTTGAC CTATTTTGCT 52887 .......... .......... .......... .......... .......... .......... 123 CTGCAAGCCG GTAGATGCCT GTGTGGAGAG AAGAGGTAAA AGCTAGCCGG ATCATAAAGG 52947 |||||||||| |||||||||| |||||||||| .......... .......... .......... AAGAGGTAAA AGCTAGCCGG ATCATAAAGG 153 AATTTGAGAC GAAGAAGATT TTCAAGTGAA CTTTGTAAAC TAGTTGGTGT GAGCTTTGAT 53007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGAGAC GAAGAAGATT TTCAAGTGAA CTTTGTAAAC TAGTTGGTGT GAGCTTTGAT 213 TTAAAAAAGT AGCAGAACGA CTATGTTAGC CGAGGGTCAA CGGGAACAAG TCAATCTCTC 53067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAAAGT AGCAGAACGA CTATGTTAGC CGAGGGTCAA CGGGAACAAG TCAATCTCTC 273 TACCTCACAA AGGTAGGGTA AGGTGTGCGT ACATCCTACC CTCCCCAGAT CCCACTTGTG 53127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTCACAA AGGTAGGGTA AGGTGTGCGT ACATCCTACC CTCCCCAGAT CCCACTTGTG 333 GGACTACACT GGGTATGTGT TGTAATTGAG TACGTTGTGT CTCTATTTTC TTGTTTACTC 53187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTACACT GGGTATGTGT TGTAATTGAG TACGTTGTGT CTCTATTTTC TTGTTTACTC 393 AAGCACCAAA TTTGTTTAGA TTATTTGATG TGAGCTTGAT TTAGAGGATT CCCTTTGTAA 53247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCACCAAA TTTGTTTAGA TTATTTGATG TGAGCTTGAT TTAGAGGATT CCCTTTGTAA 453 CCATTTTGTT CATTTCCTAG CTCTAACATT TTGAAGTTAT TAATGAAAAA AATAAAAATA 53307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTTTGTT CATTTCCTAG CTCTAACATT TTGAAGTTAT TAATGAAAAA AATAAAAATA 513 AAAAGATGAG TAAAAATTGT TTCAACTTA 53336 |||||||||| |||||||||| ||||||||| AAAAGATGAG TAAAAATTGT TTCAACTTA 542 hqPGS_C08HBa0037O11.1+_SGN-E265409- (52918 53336) ******************************************************************************** EST sequence 93 -strand 338 n (File: SGN-E216161-) 1 TCAATCAGCT ATCAGCAATA GCTAGTGCCT GGGCTTAAAA ATCCTATGGA TGAGCTAAAA 61 TAGAACCTCG GAAGTGTCAA GTAAGAAGTT TGGATAGCGA CTACAAGAAT TCAGAGGGGA 121 TAACTTGTGT CAAAATTATA TATTATGATT GTTTTCCCAT TTAACCCCTT TTTAAGTTTT 181 CTAGAGATCT AATTCTTTAC CAAGGGGGCA TTGCATAGCT TTCTCTTTCA ACATTGTCAG 241 AGAGCTTCTT CAGATGTTGT CAATAAACTG GAAAAAATCA TGATATTTCC TAGTCACAAT 301 AGAACAAGCT TGCTATTTCT AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 58391 to 56619): Exon 1 57781 57448 ( 334 n); cDNA 1 334 ( 334 n); score: 0.943 MATCH C08HBa0037O11.1- SGN-E216161- 0.943 334 0.988 C PGS_C08HBa0037O11.1-_SGN-E216161- (57781 57448) Alignment (genomic DNA sequence = upper lines): TCAATCAGCT ATCAGCAATA GCTAGTGCCT GGGCTTAGAA ATCCTATGGA TGAGCTGAAA 57722 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||| ||| TCAATCAGCT ATCAGCAATA GCTAGTGCCT GGGCTTAAAA ATCCTATGGA TGAGCTAAAA 60 TAGAACCTCG GAAGTGTCAA GGAAGAAGTT TGGATAGCGA CTACAAGAAT TCAGAGAGGA 57662 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||| ||| TAGAACCTCG GAAGTGTCAA GTAAGAAGTT TGGATAGCGA CTACAAGAAT TCAGAGGGGA 120 TAACTTGTGT CAAAATTATA TATTATGATT GTTTTCCCAT TTAACCCCTT TTTAAGTTTT 57602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTTGTGT CAAAATTATA TATTATGATT GTTTTCCCAT TTAACCCCTT TTTAAGTTTT 180 CTAGAGATCT AATTCTTTAC CAAGGGGGCA TTGCATAGCT TTCTCTTTCA ACATTGTCAG 57542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGAGATCT AATTCTTTAC CAAGGGGGCA TTGCATAGCT TTCTCTTTCA ACATTGTCAG 240 AGAGCTTCTT CAGATGTTGA CAATAAACTG GAAAAAATCA TGATATCTCC TCGTCACAAT 57482 |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| | |||||||| AGAGCTTCTT CAGATGTTGT CAATAAACTG GAAAAAATCA TGATATTTCC TAGTCACAAT 300 AGAACAAGCT TGCAATTTTT TTCCAGGATT TCAA 57448 |||||||||| ||| |||| | | | || AGAACAAGCT TGCTATTTCT AAAAAAAAAA AAAA 334 hqPGS_C08HBa0037O11.1-_SGN-E216161- (57781 57448) ******************************************************************************** EST sequence 118 +strand 418 n (File: SGN-E275775+) 1 AGGATACAAT TAAAGTGGAA AACAAACCGG GTTCCACAGA CCAACATGTT GAATGTCTCA 61 GTGAAACAGG GTCTCCAGCT ACAGTTGTTG ATTCTTTTTC ACCGCCAACT CTTAATGGTT 121 CAGAATCTAA GATAATTGGT GCCAAAGAGG AGCTATTCTC CTTGACCAAC CCCGAGGACA 181 GAATGGAGGT AGATTTTGTG GCAAGTTCTT ATGTCCAGCA AGAGCTGCAG GATGTTAAAC 241 CATACATTAG AGCTGTAGGA ACTTCTTTCC CTAGAGTGGT ATCCAGTAGT TCCTTTGGGG 301 TTAGTTCTTT GGCTGAAGCT GACATTCAAG AATGTGAAAC AATATCCCCT GTTTCTGACA 361 GTAAAGATGG TACTGAACCA TGTCAAAGAA CCACAAATGA CTGTCTTTTG AATTCTTC Predicted gene structure (within gDNA segment 59313 to 57686): Exon 1 58713 58296 ( 418 n); cDNA 1 418 ( 418 n); score: 0.998 MATCH C08HBa0037O11.1- SGN-E275775+ 0.998 418 1.000 C PGS_C08HBa0037O11.1-_SGN-E275775+ (58713 58296) Alignment (genomic DNA sequence = upper lines): AGGATACAAT TAAAGTGGAA AACAAACCGG GTTCCACAGA CCAACATGTT GAATGTCTCA 58654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATACAAT TAAAGTGGAA AACAAACCGG GTTCCACAGA CCAACATGTT GAATGTCTCA 60 GTGAAACAGG GTCTCCAGCT ACAGTTGTTG ATTCTTTTTC ACCGCCAACT CTTAATGGTT 58594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAACAGG GTCTCCAGCT ACAGTTGTTG ATTCTTTTTC ACCGCCAACT CTTAATGGTT 120 CAGAATCTAA GATAATTGGT GCCAAAGAGG AGCTATTCTC CTTGACCAAC CCCGAGGACA 58534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAATCTAA GATAATTGGT GCCAAAGAGG AGCTATTCTC CTTGACCAAC CCCGAGGACA 180 GAATGGAGGT AGATTTTGTG GCAAGTTCTT ATGTCCAGCA GGAGCTGCAG GATGTTAAAC 58474 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GAATGGAGGT AGATTTTGTG GCAAGTTCTT ATGTCCAGCA AGAGCTGCAG GATGTTAAAC 240 CATACATTAG AGCTGTAGGA ACTTCTTTCC CTAGAGTGGT ATCCAGTAGT TCCTTTGGGG 58414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACATTAG AGCTGTAGGA ACTTCTTTCC CTAGAGTGGT ATCCAGTAGT TCCTTTGGGG 300 TTAGTTCTTT GGCTGAAGCT GACATTCAAG AATGTGAAAC AATATCCCCT GTTTCTGACA 58354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTCTTT GGCTGAAGCT GACATTCAAG AATGTGAAAC AATATCCCCT GTTTCTGACA 360 GTAAAGATGG TACTGAACCA TGTCAAAGAA CCACAAATGA CTGTCTTTTG AATTCTTC 58296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTAAAGATGG TACTGAACCA TGTCAAAGAA CCACAAATGA CTGTCTTTTG AATTCTTC 418 hqPGS_C08HBa0037O11.1-_SGN-E275775+ (58713 58296) ******************************************************************************** EST sequence 116 -strand 580 n (File: SGN-E318957-) 1 TTCCACGTGT CATATTTAAG ACCACAAGAT TAAAGAGCAT TTTGGTACAT TTGACATAAC 61 TTTAATTTAG AACCACAAGA TTAGAGTTTT CTTTCTTTTC TTACACTCTG TTCCAAGTCA 121 AACTAGGTCA TCCTTTTGAA ACGAAGGGAG TAATAAATTA CTATGTTTGT ATATTGACAA 181 GCACAATAGT TCTGAAAATT TCTTATATGT ATAAATGCAG AATTTGTATA TACTTACCTT 241 GTTTGTATAT TTGCAAACAA AATATACAAA CGGATGTCAC GAACCAAAAA TGGACTTGAT 301 GGCACTCGTC TTATCTTGCC AAGACAATTC AGCCTAAAAC TCAACTTCTT CGGGGCAGCG 361 AGCTGGAGAC GAAACGAGCA AGGGGATGAC CTTCCACTAC ACAACTTCGA GTTCAAATGA 421 TAATCAAAAA CCCCGCAATC CTTTTGTTTT TAATTCAACT TCAATAGATA TATAGGTGTG 481 CTTAAACTAT TGTAAAATCT TCTTATGACT AAACTCTTTC AATAATTCTT TTCTATCACA 541 AGATGTAAAA AAAAAAAATT CTCTCCAAAA ACCATCCCTT Predicted gene structure (within gDNA segment 59154 to 66742): Exon 1 59890 60047 ( 158 n); cDNA 1 156 ( 156 n); score: 0.889 Intron 1 60048 65264 (5217 n); Pd: 0.000 (s: 0.88), Pa: 0.945 (s: 0) Exon 2 65265 65282 ( 18 n); cDNA 157 174 ( 18 n); score: 0.778 Intron 2 65283 65862 ( 580 n); Pd: 0.000 (s: 0), Pa: 0.617 (s: 0) Exon 3 65863 65887 ( 25 n); cDNA 175 199 ( 25 n); score: 0.600 PPA cDNA 547 559 MATCH C08HBa0037O11.1+ SGN-E318957- 0.889 201 0.347 C PGS_C08HBa0037O11.1+_SGN-E318957- (59890 60047,65265 65282,65863 65887) Alignment (genomic DNA sequence = upper lines): TTCCATGTGG CATGTTTAAG ACCACAAGAT TAAAGGGCAT TTTGGTACAT TTGACATAAC 59949 ||||| ||| ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTCCACGTGT CATATTTAAG ACCACAAGAT TAAAGAGCAT TTTGGTACAT TTGACATAAC 60 TTTAATTTAG AACCACAAGA TTAATTGGTC TTCTTTCTTT TCTTA-ACTC CGTTCCAAGT 60008 |||||||||| |||||||||| ||| || |||||||||| ||||| |||| ||||||||| TTTAATTTAG AACCACAAGA TTAGA--GTT TTCTTTCTTT TCTTACACTC TGTTCCAAGT 118 CAAACTAGGT CATTCTTTTT TAAACGGAGG GAGTAATATT TTTATTATTC AAACAGATCT 60068 |||||||||| || || |||| ||||| ||| |||||||| CAAACTAGGT CA-TCCTTTT GAAACGAAGG GAGTAATAA. .......... .......... 156 ATTGAGGCAA ATGTAGCATT TCACCGCATA TAGCAGCTTA TTAAATTTTA AAGCTTCAGA 60128 .......... .......... .......... .......... .......... .......... 156 GATGTAGTGT AGATTATCAG CACAAAAGAA TATAAATGGA AGTCCAACAT GCCACATTCA 60188 .......... .......... .......... .......... .......... .......... 156 GCAATCAACC AATGTATTTT GTGCATTGGG ACGACATACA ACAATAAACA AGAGGGTGTA 60248 .......... .......... .......... .......... .......... .......... 156 GAGAAAATGA GATGTTTCTA CCTTGCAGTC ATCGATCCGG TGCCAACTTC CACGAAAATC 60308 .......... .......... .......... .......... .......... .......... 156 CTTGATATAG CATATGTAAT GGCCGAAAAA TGACGCATTC AACATATCCA CATGAACAAT 60368 .......... .......... .......... .......... .......... .......... 156 AACTGCATAT AGCTTGTAAA TATCATTGCC ATCTCCTGTT TCGCTCATGT ACGGATGGAG 60428 .......... .......... .......... .......... .......... .......... 156 ATCTAGTGTT TCAGGGAAAG TCACTCTCTT ATTTAATTTG CCAAACCTAC CACTCTGCAT 60488 .......... .......... .......... .......... .......... .......... 156 AGAGATATTG GACATAAATA AACAAAACTA GCAGATTTTG GAGCACAAAC ACACAGAGTT 60548 .......... .......... .......... .......... .......... .......... 156 GCTTCCAAGA ATAAAATGGA ATTTAGGGGG AGAAGAATGT TAATAGAGAG AAAGATGGTC 60608 .......... .......... .......... .......... .......... .......... 156 CATAGTTATT GTAATTTACC CAAGAATAAA ACGGTATTAG GGATGAGGAA TGTTAATAGC 60668 .......... .......... .......... .......... .......... .......... 156 AAGAAAGACA GTCCCTCAGT TATTGTAAAT CACCCAAGAA TAGAATAGAA CTTAGGGGTG 60728 .......... .......... .......... .......... .......... .......... 156 AGGAATGTTG AAAGAGAGAG AACATCCCTG ATTTATTGCA ATTCACTCAT CCCACATAAA 60788 .......... .......... .......... .......... .......... .......... 156 AAAGCAAATT CTATTTCACA GTTCTAAAAG AGATATAATA ACAACAATTA GAAACGCTAC 60848 .......... .......... .......... .......... .......... .......... 156 ACTTAGGGAT CAAATTATCC TTTTGCTTTA CAAGCTAGGA TATGCTTGGT ATTCATACAA 60908 .......... .......... .......... .......... .......... .......... 156 ACTGAGCTAA AGATAGGGCA CAATGGAAGA AAAAGATCAT CTAGGTGATA GCTACTAGTT 60968 .......... .......... .......... .......... .......... .......... 156 GATTAGCATG CATTCGATTG TCATCAACTC TTGGTCAACT CATCAATTCA GAATCTGGTT 61028 .......... .......... .......... .......... .......... .......... 156 GTTGCTGGTT GTTGTTCACA CTTTTTTTTC TATCTTTCAC TTGAAGGATT GAATGGATTC 61088 .......... .......... .......... .......... .......... .......... 156 CTTAAACGGT TCAACTCTTT TGAACTAATA TTACATAGTT GCCATGTGGT TGGCTATTTG 61148 .......... .......... .......... .......... .......... .......... 156 TCTTAAATGA AAAGTTAAAA ATGCAGTCCA CTATTTGTAG TATTTACATC TGTTATTGGA 61208 .......... .......... .......... .......... .......... .......... 156 ATATGGCCAA AAGAATCCCA CCGGGGAAGA GGACCACCTT GATGTGGGGA TGACTTGCTG 61268 .......... .......... .......... .......... .......... .......... 156 GAGAGATGAA AATTGGAAAT GAAACTTTCT TCTAATACTC TCAAGTGCAG GACTAGTATG 61328 .......... .......... .......... .......... .......... .......... 156 ACTCACTTTT TTCACTGGAG AGAATAGAGA TATAGGTCAT TGACCACTAA CTAAAGAAGG 61388 .......... .......... .......... .......... .......... .......... 156 ATAGGTCCTA TAAAAAGATC AAGGATCTTT CATTTACATG TTTGGAAAAG AAAAACTTGT 61448 .......... .......... .......... .......... .......... .......... 156 TTAAGGGCTA TAGTTTATAG TTCACTTAAC CATAGATGAT TGAAGCACAA TAAATAGCAA 61508 .......... .......... .......... .......... .......... .......... 156 AATGAAACCA ACCTGAAACC TTTTCAAGGC AATTGTTAAG ATATTTGGTG CCCTCCTGAC 61568 .......... .......... .......... .......... .......... .......... 156 CATAAGGCGC TTCCATGCTT TGACATAGTC ATTGCATCTG CAAGTTTAAC CGCATTTGTT 61628 .......... .......... .......... .......... .......... .......... 156 GATTAACGAT TAGGTAGCAG TATCAATCAA CTGTGCCTTG ATTGGTTGTC AACCATCAGC 61688 .......... .......... .......... .......... .......... .......... 156 AATTTAACTA GTGAGCTTTA AATAACTCAC ACATGATAAA ATTAAGCATG CCACCCAATA 61748 .......... .......... .......... .......... .......... .......... 156 GAATTAATGC ATAGGATAAA TTGGAAAACT AACATTAAAG TTACTGTCCA ACCACAATTT 61808 .......... .......... .......... .......... .......... .......... 156 TTGAAATATC TTTTTATGAT GTATGTGACA ATTATCCTCA AAAACTCTCC AAATAATAAC 61868 .......... .......... .......... .......... .......... .......... 156 TAAGCCAAAG AAATAGGACA GAAGAGTGAC ATATGTGAAT CAAGATCTAG ATGGATCCCT 61928 .......... .......... .......... .......... .......... .......... 156 ATCTTTATCT CTATCCACGG AGATACCTAT CTATATGGCG AGAGATTTAT CTATGAATCG 61988 .......... .......... .......... .......... .......... .......... 156 GCCTAGACTA TCCTCTATCA GGATAGATAT GTCCCTCTGA GCGACTAAGC TGATCTTTAT 62048 .......... .......... .......... .......... .......... .......... 156 ATGTTTTGGC CACCTCCCTT TCCGCTCCGA AGAAGAAGGT TTGGATCTTT CAATCTTATA 62108 .......... .......... .......... .......... .......... .......... 156 TCATGAGGTA TGTGACCTAT GTTAGGTCCA TAAGATACCA CAGCCTTAGG TGTTCTATGA 62168 .......... .......... .......... .......... .......... .......... 156 TTCACCTCTG GATAATGAGT AGGTAGTTCG AACCTTTTTA TTTTGATCTT ATTAGTAAAC 62228 .......... .......... .......... .......... .......... .......... 156 TGATGGGGGG TTGCGGAGCA ATAGGTCAAA TTACTATACA AAGAAGAGTT GTAAACTATA 62288 .......... .......... .......... .......... .......... .......... 156 GAACTTCTTG TTCAAGTAGG AATATTTCGG TTTTAATGTC TGTATTAATC CACCATGCTA 62348 .......... .......... .......... .......... .......... .......... 156 TTAGATACAG ATGAACACAA AAATCTGAGA ATGGAATCAA TCAGCATTGT AAGGTAAACA 62408 .......... .......... .......... .......... .......... .......... 156 TAAAACTATA CATCATTGCT CAAAGAACAC CAAAATGGCA CTCCAGACTG TAAAAAGGAT 62468 .......... .......... .......... .......... .......... .......... 156 GTAATTAATC ACTGGCATGG GAAACCTCAC CCATCACATT TATACAAGTT ATCGCCATCA 62528 .......... .......... .......... .......... .......... .......... 156 AGCCATTCTC TAGCAGTGAA TTGATCTAAG CACTCCTCCA AAGATTCAGC ATCCCCATGA 62588 .......... .......... .......... .......... .......... .......... 156 ATCTCTACTG TCAGATCCAT CATATTTTCA ATCTGATTTG AGACATTACT GCATTCTGTA 62648 .......... .......... .......... .......... .......... .......... 156 CATATGACCT AAAAACAGAA ATAACTCATT TAGGAAGAGA AGGAAAGGGA AGAGATCAGA 62708 .......... .......... .......... .......... .......... .......... 156 ATAATGTAAG AGCGAAAACA CATATGCAGC TTGAAATATC AAAAAACACA AAATACTTGG 62768 .......... .......... .......... .......... .......... .......... 156 CAGAATACCT AATTATCCCC TTAAACTTGA CACCATTTAT TCGGTGGATG CCTAAATTAT 62828 .......... .......... .......... .......... .......... .......... 156 TTGTAGTCCC AATTACACTG GACTTGGCTA GCATTCCATT ATTTTAGCCA AATAAGAAAG 62888 .......... .......... .......... .......... .......... .......... 156 GTTTAGCCAA AATAATAGGT TCCAAATGTG TATTTCTTTA TCTATTTGGT TTAGATGCAG 62948 .......... .......... .......... .......... .......... .......... 156 TGGCTATTTA TTCCAAACAA TTCCTTTTTT TCTGTTTGAC ACAAATCTGT ATTGGCTAGA 63008 .......... .......... .......... .......... .......... .......... 156 GCTCCATTAT TTTTAGCCAA ATAAAAAGTT CGAGCCAGAA TAAATAATTC CAACTATGTA 63068 .......... .......... .......... .......... .......... .......... 156 CTTCTCAATG CAATGACTAT TTGTTTCAAC TATGCAATTC TTCTTTTTCG GGCCAAATGC 63128 .......... .......... .......... .......... .......... .......... 156 CCAAATCGAA GTTTGATCAA ACTCCAATAT TTTTAGCCAA ATAAAAACTC CAGTCTACAA 63188 .......... .......... .......... .......... .......... .......... 156 TAGAATTCCA ACTAATTTCT TTTACCAATT TATACTGAAC AATTAATGAA ATAAAAAAAA 63248 .......... .......... .......... .......... .......... .......... 156 GGTTAAAGAT ATATTTTATT TTAATGAGAA GTGCAACGTA GCAACATCTG TATATCACTT 63308 .......... .......... .......... .......... .......... .......... 156 CCATGGGATG AGATCGTCAA GGCTAAGGGC TATTAAATAA CCAAATCTAA ATGGGGTAAT 63368 .......... .......... .......... .......... .......... .......... 156 CAAGACTACA AATAGTTAAG GTGTGCACTG AATAAACGGG GCCAAGTTTA GGTGGGTAAT 63428 .......... .......... .......... .......... .......... .......... 156 TTGGTTACTA GCAAAATATT TTCATGATGC AATATTTAAA GTATATAGGA AGTGTCAAGT 63488 .......... .......... .......... .......... .......... .......... 156 CCTATTATGA TACTTTGGAT AGTGACATGC TTATGTCTTC TCTTATCATA AATTAAAATT 63548 .......... .......... .......... .......... .......... .......... 156 ACCTGAGATT GCAGGTGACC ACCAAATATG TGCTGAATAA GTGTTGTCTC CTGTGTGTTA 63608 .......... .......... .......... .......... .......... .......... 156 GGAGGAACAG CCTTCTCTCC ACCAAATTCA TCAAGACACA CAGACTGCAT CATGTCAATA 63668 .......... .......... .......... .......... .......... .......... 156 GCAAACCTAC AAAAGAACAA ATTTTTCATT ATTTTATGTA CCATAGCTTC TGGACATTAA 63728 .......... .......... .......... .......... .......... .......... 156 ACACGGCTGA TTAAACACTA TAGCAGAAAA TACATATCAG ACTTCCTATA AGATACTCAA 63788 .......... .......... .......... .......... .......... .......... 156 CAAATTTATT TTCTGAAAAG AAACATACCT CATAAATTCA TGCGCATCCT CCTGCTTACC 63848 .......... .......... .......... .......... .......... .......... 156 ATACCCGAGA TTACCACCAA TATTAGGCAA CCGTGAAAGT ATGTTGATTG GTGAGAAGGG 63908 .......... .......... .......... .......... .......... .......... 156 CTGCTGACTC CGACTAGCCC GTTCTACATG GTGTTGAAAT TCACAAAGGA AGCACCAACC 63968 .......... .......... .......... .......... .......... .......... 156 ATTCCGCCTA CCTGAGGGAA GAGAGGGAAA AAGTGCATAA CATAAAGAGC TATTCCAATT 64028 .......... .......... .......... .......... .......... .......... 156 ACTTCAAAAA AAAGGCAGTA GCTTGTATAC TTTCTAAATG GATTACATTC TCTCAGATGG 64088 .......... .......... .......... .......... .......... .......... 156 CCTTTTTCCA ACAAGTAGGC AACAAGTGGC TTGGTATATG TCAGACATTG CAGAACCACA 64148 .......... .......... .......... .......... .......... .......... 156 TTAGCGAAGC AACTGCACAA GAACCAAAAA TACATTTAAA ATACAGATAC AAAAGACAGA 64208 .......... .......... .......... .......... .......... .......... 156 TGGCATATTA AACAATTCTT GGTGGCTGGA GTGTAACTGA GGGAATACCT GTTTCCACAA 64268 .......... .......... .......... .......... .......... .......... 156 TTAAGGAGCC CACAAGGTGG AAAACCTGGG CTATCCCAGT TAAAGAGTTC CAAGAATTCC 64328 .......... .......... .......... .......... .......... .......... 156 TCATATGGGA AAAGAACCTA AACGATTTAA CCAAACTTTG GTCAGGTGCT GTGACATAAA 64388 .......... .......... .......... .......... .......... .......... 156 TGCATAGTTG TGTAATTAAC TAAGACGGAG AATACCTTCT TCGAATGGTC TAGAACCTTA 64448 .......... .......... .......... .......... .......... .......... 156 GAGGTTCCAC TAGCATGAGA GAGTGAAACA GCAGAAGATT TCCTCCCATG CAAAGAACTG 64508 .......... .......... .......... .......... .......... .......... 156 CCTTTCCCAG ATAACTGTAA ATCCTTGCAT TTAAATTTGT GCCCTGAGTT CCAATGAGAT 64568 .......... .......... .......... .......... .......... .......... 156 CTCTGGCAAG CTTCAGAGCT ATGAGAGGAA GAAAGAGAGA GAGAGAGAGT AGAACCAATC 64628 .......... .......... .......... .......... .......... .......... 156 ATTAGTTAAC CAACACGGCA CTCCAGAGTC CTGACTATAT AAGGAAAAGG AAACAAAAGT 64688 .......... .......... .......... .......... .......... .......... 156 ATGGTCACCC CTGAGGAGTG TTTTAGAAGT GAAACGTGCA AAACAACAAG GTCAAATGGA 64748 .......... .......... .......... .......... .......... .......... 156 CTTTAAGCGA CTAGTACAAT ACACGTTTTT TTGAAGTGAA GAGCACAAGT TACGTAAAAT 64808 .......... .......... .......... .......... .......... .......... 156 CACAAAAAGG AAAACGGAAA AATTTCCTTG TACTATACAA AATTGAACTG TCATAAAAAA 64868 .......... .......... .......... .......... .......... .......... 156 ATCGACCGCA CTGATCAAGG TCACAATTGT TTATACTTTG GATATATTCA AATCCTGCCG 64928 .......... .......... .......... .......... .......... .......... 156 TTAGAGAAAA ATCTTTACCA ATATATCGTC ACATATTGTG TTTATACCGT AAAATAGAAG 64988 .......... .......... .......... .......... .......... .......... 156 ATCCTGTTAA AAAGAAAACA GAAGTAACCA TTGTGGACAC TAATTGATAG AAGTCAAGTT 65048 .......... .......... .......... .......... .......... .......... 156 ACTTTGTCAA GGGGCTCTAT ATTACAATTT AGTATAAATA GTAGTATATC AGATGATGCT 65108 .......... .......... .......... .......... .......... .......... 156 AGATTGTCAG TTATAAAATT AGACACAATA ACTGGTCACT GTTGTCGCCA TAGAGAGAAA 65168 .......... .......... .......... .......... .......... .......... 156 GGTATTTTAT GGAATCCAAA ATTAAAATCT TCGTAAAGAT ATTGATATTG TTGTAGATTG 65228 .......... .......... .......... .......... .......... .......... 156 TGTAAACATA CAAAAAACCT ATTGTCTGGG CTATAGATCC CTGTGTGTGT ATATATACAT 65288 || || ||| ||| |||| .......... .......... .......... ......ATTA CTATGTTTGT ATAT...... 174 AAAGAGAGAG AGAGAGATGC AATCATAGAT CGTATATGTG GCCACAGGAA ATTGTGCTGT 65348 .......... .......... .......... .......... .......... .......... 174 CAAAGGTGAA AAGAGAGGGA AAAAACAATT AGGCTTGTTG AGGCAATAAG TGCATAGCAC 65408 .......... .......... .......... .......... .......... .......... 174 AAATAAAGCA TCGCTCTAGT GAAGAAATTA TGAATACCTA GATGTAGTTC AAAAATAGTA 65468 .......... .......... .......... .......... .......... .......... 174 ACTATAAACC CAAATAACAA TTATATAGAC AAAAAAATAA CGAAAAAACT AAGTGTAGGT 65528 .......... .......... .......... .......... .......... .......... 174 GAATTACTTA TAGTTTAGTG CACTCTCTTT TGAGGCAAAC ACGTACATCC TACTTTGCAT 65588 .......... .......... .......... .......... .......... .......... 174 CTAACTTGAG GGCTTGAGCA CGCCTCAACC GAGCTTTTGA CAACAATGCC GAGAAGTTAT 65648 .......... .......... .......... .......... .......... .......... 174 TTTATATAAT TAGGGATCTA TATAACAATA TAGGAGAAAA AGCAGAAAAG TATAATCGTG 65708 .......... .......... .......... .......... .......... .......... 174 CATTTATAAC CAACCAAATT GCAGACTCGC AAAAGATTGA CCGCTGTGGA GTGTGCACGA 65768 .......... .......... .......... .......... .......... .......... 174 TAGAACGTAT GTGGTTCAAG TACTGTTATT ATGAGATTAA TAATAATGTA CAGATTTTCA 65828 .......... .......... .......... .......... .......... .......... 174 TATGGTAACT AATAATACTT GAATTGCTAT GCAGGGACTA ACAGTCTAGT AGTTAATAT 65887 ||| | || |||| | || || .......... .......... .......... ....TGACAA GCACAATAGT TCTGAAAAT 199 hqPGS_C08HBa0037O11.1+_SGN-E318957- (59890 60047) ******************************************************************************** EST sequence 64 +strand 429 n (File: SGN-E393272+) 1 TTTTTAGTTT GTTTAAAAAT GAATGACTCC TTTCATTTTG TTTTAACTTT CCAAGTGACA 61 TGTTTAAGAC GACATTTTGG TACATTTGAC ATAACTTTAA TTTAGAACCA CAAAATTAAA 121 AAGTCTTCTT CTTTTCTTAA ACTCCGTTCC AAGTCAAACT AGGTCATTCT TTTTTAAATG 181 AAGGGAGTAC TATTTTGGAA ATTTAGAGTT GGTTTTGTTT TCTCAATGAG ATGGTGAAAG 241 TGTACACCAT AGAATTATGA GATCTTTTTT TCTTGTCCAA CTTGAAATGG TTGCCGAATC 301 ATTATCTTGG TATTATGCTG GGGAAGCTTT TCAGAATTTT CACCTTAGTG TATTCTAATA 361 TTTCTAATAT ATCTAGTTGT ACGAAAGATC TTGCATCCTA TAGTGATGCT TACCTTTTTT 421 ACAATATTC Predicted gene structure (within gDNA segment 58607 to 63752): Exon 1 59927 60074 ( 148 n); cDNA 73 219 ( 147 n); score: 0.828 Intron 1 60075 63069 (2995 n); Pd: 0.282 (s: 0.64), Pa: 0.000 (s: 0) Exon 2 63070 63077 ( 8 n); cDNA 220 227 ( 8 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E393272+ 0.828 156 0.364 C PGS_C08HBa0037O11.1+_SGN-E393272+ (59927 60074,63070 63077) Alignment (genomic DNA sequence = upper lines): CATTTTGGTA CATTTGACAT AACTTTAATT TAGAACCACA AGATTAATTG GTCTTCTTTC 59986 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| |||||| ||| CATTTTGGTA CATTTGACAT AACTTTAATT TAGAACCACA AAATTAAAAA GTCTTC-TTC 131 TTTTCTTA-A CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAACGG AGGGAGTAAT 60045 |||||||| | |||||||||| |||||||||| |||||||||| ||||||| | |||||||| | TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA AGGGAGTACT 191 ATTTTTATTA TTCAAACAGA TCTATTGAGG CAAATGTAGC ATTTCACCGC ATATAGCAGC 60105 ||||| | || | | | ||| ATTTTGGAAA TTTAGA-GTT GGTTTTGTT. .......... .......... .......... 219 TTATTAAATT TTAAAGCTTC AGAGATGTAG TGTAGATTAT CAGCACAAAA GAATATAAAT 60165 .......... .......... .......... .......... .......... .......... 219 GGAAGTCCAA CATGCCACAT TCAGCAATCA ACCAATGTAT TTTGTGCATT GGGACGACAT 60225 .......... .......... .......... .......... .......... .......... 219 ACAACAATAA ACAAGAGGGT GTAGAGAAAA TGAGATGTTT CTACCTTGCA GTCATCGATC 60285 .......... .......... .......... .......... .......... .......... 219 CGGTGCCAAC TTCCACGAAA ATCCTTGATA TAGCATATGT AATGGCCGAA AAATGACGCA 60345 .......... .......... .......... .......... .......... .......... 219 TTCAACATAT CCACATGAAC AATAACTGCA TATAGCTTGT AAATATCATT GCCATCTCCT 60405 .......... .......... .......... .......... .......... .......... 219 GTTTCGCTCA TGTACGGATG GAGATCTAGT GTTTCAGGGA AAGTCACTCT CTTATTTAAT 60465 .......... .......... .......... .......... .......... .......... 219 TTGCCAAACC TACCACTCTG CATAGAGATA TTGGACATAA ATAAACAAAA CTAGCAGATT 60525 .......... .......... .......... .......... .......... .......... 219 TTGGAGCACA AACACACAGA GTTGCTTCCA AGAATAAAAT GGAATTTAGG GGGAGAAGAA 60585 .......... .......... .......... .......... .......... .......... 219 TGTTAATAGA GAGAAAGATG GTCCATAGTT ATTGTAATTT ACCCAAGAAT AAAACGGTAT 60645 .......... .......... .......... .......... .......... .......... 219 TAGGGATGAG GAATGTTAAT AGCAAGAAAG ACAGTCCCTC AGTTATTGTA AATCACCCAA 60705 .......... .......... .......... .......... .......... .......... 219 GAATAGAATA GAACTTAGGG GTGAGGAATG TTGAAAGAGA GAGAACATCC CTGATTTATT 60765 .......... .......... .......... .......... .......... .......... 219 GCAATTCACT CATCCCACAT AAAAAAGCAA ATTCTATTTC ACAGTTCTAA AAGAGATATA 60825 .......... .......... .......... .......... .......... .......... 219 ATAACAACAA TTAGAAACGC TACACTTAGG GATCAAATTA TCCTTTTGCT TTACAAGCTA 60885 .......... .......... .......... .......... .......... .......... 219 GGATATGCTT GGTATTCATA CAAACTGAGC TAAAGATAGG GCACAATGGA AGAAAAAGAT 60945 .......... .......... .......... .......... .......... .......... 219 CATCTAGGTG ATAGCTACTA GTTGATTAGC ATGCATTCGA TTGTCATCAA CTCTTGGTCA 61005 .......... .......... .......... .......... .......... .......... 219 ACTCATCAAT TCAGAATCTG GTTGTTGCTG GTTGTTGTTC ACACTTTTTT TTCTATCTTT 61065 .......... .......... .......... .......... .......... .......... 219 CACTTGAAGG ATTGAATGGA TTCCTTAAAC GGTTCAACTC TTTTGAACTA ATATTACATA 61125 .......... .......... .......... .......... .......... .......... 219 GTTGCCATGT GGTTGGCTAT TTGTCTTAAA TGAAAAGTTA AAAATGCAGT CCACTATTTG 61185 .......... .......... .......... .......... .......... .......... 219 TAGTATTTAC ATCTGTTATT GGAATATGGC CAAAAGAATC CCACCGGGGA AGAGGACCAC 61245 .......... .......... .......... .......... .......... .......... 219 CTTGATGTGG GGATGACTTG CTGGAGAGAT GAAAATTGGA AATGAAACTT TCTTCTAATA 61305 .......... .......... .......... .......... .......... .......... 219 CTCTCAAGTG CAGGACTAGT ATGACTCACT TTTTTCACTG GAGAGAATAG AGATATAGGT 61365 .......... .......... .......... .......... .......... .......... 219 CATTGACCAC TAACTAAAGA AGGATAGGTC CTATAAAAAG ATCAAGGATC TTTCATTTAC 61425 .......... .......... .......... .......... .......... .......... 219 ATGTTTGGAA AAGAAAAACT TGTTTAAGGG CTATAGTTTA TAGTTCACTT AACCATAGAT 61485 .......... .......... .......... .......... .......... .......... 219 GATTGAAGCA CAATAAATAG CAAAATGAAA CCAACCTGAA ACCTTTTCAA GGCAATTGTT 61545 .......... .......... .......... .......... .......... .......... 219 AAGATATTTG GTGCCCTCCT GACCATAAGG CGCTTCCATG CTTTGACATA GTCATTGCAT 61605 .......... .......... .......... .......... .......... .......... 219 CTGCAAGTTT AACCGCATTT GTTGATTAAC GATTAGGTAG CAGTATCAAT CAACTGTGCC 61665 .......... .......... .......... .......... .......... .......... 219 TTGATTGGTT GTCAACCATC AGCAATTTAA CTAGTGAGCT TTAAATAACT CACACATGAT 61725 .......... .......... .......... .......... .......... .......... 219 AAAATTAAGC ATGCCACCCA ATAGAATTAA TGCATAGGAT AAATTGGAAA ACTAACATTA 61785 .......... .......... .......... .......... .......... .......... 219 AAGTTACTGT CCAACCACAA TTTTTGAAAT ATCTTTTTAT GATGTATGTG ACAATTATCC 61845 .......... .......... .......... .......... .......... .......... 219 TCAAAAACTC TCCAAATAAT AACTAAGCCA AAGAAATAGG ACAGAAGAGT GACATATGTG 61905 .......... .......... .......... .......... .......... .......... 219 AATCAAGATC TAGATGGATC CCTATCTTTA TCTCTATCCA CGGAGATACC TATCTATATG 61965 .......... .......... .......... .......... .......... .......... 219 GCGAGAGATT TATCTATGAA TCGGCCTAGA CTATCCTCTA TCAGGATAGA TATGTCCCTC 62025 .......... .......... .......... .......... .......... .......... 219 TGAGCGACTA AGCTGATCTT TATATGTTTT GGCCACCTCC CTTTCCGCTC CGAAGAAGAA 62085 .......... .......... .......... .......... .......... .......... 219 GGTTTGGATC TTTCAATCTT ATATCATGAG GTATGTGACC TATGTTAGGT CCATAAGATA 62145 .......... .......... .......... .......... .......... .......... 219 CCACAGCCTT AGGTGTTCTA TGATTCACCT CTGGATAATG AGTAGGTAGT TCGAACCTTT 62205 .......... .......... .......... .......... .......... .......... 219 TTATTTTGAT CTTATTAGTA AACTGATGGG GGGTTGCGGA GCAATAGGTC AAATTACTAT 62265 .......... .......... .......... .......... .......... .......... 219 ACAAAGAAGA GTTGTAAACT ATAGAACTTC TTGTTCAAGT AGGAATATTT CGGTTTTAAT 62325 .......... .......... .......... .......... .......... .......... 219 GTCTGTATTA ATCCACCATG CTATTAGATA CAGATGAACA CAAAAATCTG AGAATGGAAT 62385 .......... .......... .......... .......... .......... .......... 219 CAATCAGCAT TGTAAGGTAA ACATAAAACT ATACATCATT GCTCAAAGAA CACCAAAATG 62445 .......... .......... .......... .......... .......... .......... 219 GCACTCCAGA CTGTAAAAAG GATGTAATTA ATCACTGGCA TGGGAAACCT CACCCATCAC 62505 .......... .......... .......... .......... .......... .......... 219 ATTTATACAA GTTATCGCCA TCAAGCCATT CTCTAGCAGT GAATTGATCT AAGCACTCCT 62565 .......... .......... .......... .......... .......... .......... 219 CCAAAGATTC AGCATCCCCA TGAATCTCTA CTGTCAGATC CATCATATTT TCAATCTGAT 62625 .......... .......... .......... .......... .......... .......... 219 TTGAGACATT ACTGCATTCT GTACATATGA CCTAAAAACA GAAATAACTC ATTTAGGAAG 62685 .......... .......... .......... .......... .......... .......... 219 AGAAGGAAAG GGAAGAGATC AGAATAATGT AAGAGCGAAA ACACATATGC AGCTTGAAAT 62745 .......... .......... .......... .......... .......... .......... 219 ATCAAAAAAC ACAAAATACT TGGCAGAATA CCTAATTATC CCCTTAAACT TGACACCATT 62805 .......... .......... .......... .......... .......... .......... 219 TATTCGGTGG ATGCCTAAAT TATTTGTAGT CCCAATTACA CTGGACTTGG CTAGCATTCC 62865 .......... .......... .......... .......... .......... .......... 219 ATTATTTTAG CCAAATAAGA AAGGTTTAGC CAAAATAATA GGTTCCAAAT GTGTATTTCT 62925 .......... .......... .......... .......... .......... .......... 219 TTATCTATTT GGTTTAGATG CAGTGGCTAT TTATTCCAAA CAATTCCTTT TTTTCTGTTT 62985 .......... .......... .......... .......... .......... .......... 219 GACACAAATC TGTATTGGCT AGAGCTCCAT TATTTTTAGC CAAATAAAAA GTTCGAGCCA 63045 .......... .......... .......... .......... .......... .......... 219 GAATAAATAA TTCCAACTAT GTACTTCTCA AT 63077 |||||| || .......... .......... ....TTCTCA AT 227 hqPGS_C08HBa0037O11.1+_SGN-E393272+ (59927 60074) ******************************************************************************** EST sequence 78 +strand 525 n (File: SGN-E210228+) 1 TTTTAGTTCG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTG CAAGGGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC CCAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA CAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATCTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTGTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCC Predicted gene structure (within gDNA segment 58617 to 64122): Exon 1 59927 60074 ( 148 n); cDNA 72 218 ( 147 n); score: 0.814 Intron 1 60075 63069 (2995 n); Pd: 0.282 (s: 0.64), Pa: 0.000 (s: 0) Exon 2 63070 63077 ( 8 n); cDNA 219 226 ( 8 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E210228+ 0.814 156 0.297 C PGS_C08HBa0037O11.1+_SGN-E210228+ (59927 60074,63070 63077) Alignment (genomic DNA sequence = upper lines): CATTTTGGTA CATTTGACAT AACTTTAATT TAGAACCACA AGATTAATTG GTCTTCTTTC 59986 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||||| ||| CATTTTGGTA CATTTGACAT AACTTTAATT TAGAACCACC CAATTAAAAA GTCTTC-TTC 130 TTTTCTTAA- CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAACGG AGGGAGTAAT 60045 ||||||||| |||||||||| |||||||||| |||||||||| ||||||| | |||||||| | TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA AGGGAGTACT 190 ATTTTTATTA TTCAAACAGA TCTATTGAGG CAAATGTAGC ATTTCACCGC ATATAGCAGC 60105 ||||| | || | | | ||| ATTTTGGAAA TTTAGA-GTT GGTTTTGTT. .......... .......... .......... 218 TTATTAAATT TTAAAGCTTC AGAGATGTAG TGTAGATTAT CAGCACAAAA GAATATAAAT 60165 .......... .......... .......... .......... .......... .......... 218 GGAAGTCCAA CATGCCACAT TCAGCAATCA ACCAATGTAT TTTGTGCATT GGGACGACAT 60225 .......... .......... .......... .......... .......... .......... 218 ACAACAATAA ACAAGAGGGT GTAGAGAAAA TGAGATGTTT CTACCTTGCA GTCATCGATC 60285 .......... .......... .......... .......... .......... .......... 218 CGGTGCCAAC TTCCACGAAA ATCCTTGATA TAGCATATGT AATGGCCGAA AAATGACGCA 60345 .......... .......... .......... .......... .......... .......... 218 TTCAACATAT CCACATGAAC AATAACTGCA TATAGCTTGT AAATATCATT GCCATCTCCT 60405 .......... .......... .......... .......... .......... .......... 218 GTTTCGCTCA TGTACGGATG GAGATCTAGT GTTTCAGGGA AAGTCACTCT CTTATTTAAT 60465 .......... .......... .......... .......... .......... .......... 218 TTGCCAAACC TACCACTCTG CATAGAGATA TTGGACATAA ATAAACAAAA CTAGCAGATT 60525 .......... .......... .......... .......... .......... .......... 218 TTGGAGCACA AACACACAGA GTTGCTTCCA AGAATAAAAT GGAATTTAGG GGGAGAAGAA 60585 .......... .......... .......... .......... .......... .......... 218 TGTTAATAGA GAGAAAGATG GTCCATAGTT ATTGTAATTT ACCCAAGAAT AAAACGGTAT 60645 .......... .......... .......... .......... .......... .......... 218 TAGGGATGAG GAATGTTAAT AGCAAGAAAG ACAGTCCCTC AGTTATTGTA AATCACCCAA 60705 .......... .......... .......... .......... .......... .......... 218 GAATAGAATA GAACTTAGGG GTGAGGAATG TTGAAAGAGA GAGAACATCC CTGATTTATT 60765 .......... .......... .......... .......... .......... .......... 218 GCAATTCACT CATCCCACAT AAAAAAGCAA ATTCTATTTC ACAGTTCTAA AAGAGATATA 60825 .......... .......... .......... .......... .......... .......... 218 ATAACAACAA TTAGAAACGC TACACTTAGG GATCAAATTA TCCTTTTGCT TTACAAGCTA 60885 .......... .......... .......... .......... .......... .......... 218 GGATATGCTT GGTATTCATA CAAACTGAGC TAAAGATAGG GCACAATGGA AGAAAAAGAT 60945 .......... .......... .......... .......... .......... .......... 218 CATCTAGGTG ATAGCTACTA GTTGATTAGC ATGCATTCGA TTGTCATCAA CTCTTGGTCA 61005 .......... .......... .......... .......... .......... .......... 218 ACTCATCAAT TCAGAATCTG GTTGTTGCTG GTTGTTGTTC ACACTTTTTT TTCTATCTTT 61065 .......... .......... .......... .......... .......... .......... 218 CACTTGAAGG ATTGAATGGA TTCCTTAAAC GGTTCAACTC TTTTGAACTA ATATTACATA 61125 .......... .......... .......... .......... .......... .......... 218 GTTGCCATGT GGTTGGCTAT TTGTCTTAAA TGAAAAGTTA AAAATGCAGT CCACTATTTG 61185 .......... .......... .......... .......... .......... .......... 218 TAGTATTTAC ATCTGTTATT GGAATATGGC CAAAAGAATC CCACCGGGGA AGAGGACCAC 61245 .......... .......... .......... .......... .......... .......... 218 CTTGATGTGG GGATGACTTG CTGGAGAGAT GAAAATTGGA AATGAAACTT TCTTCTAATA 61305 .......... .......... .......... .......... .......... .......... 218 CTCTCAAGTG CAGGACTAGT ATGACTCACT TTTTTCACTG GAGAGAATAG AGATATAGGT 61365 .......... .......... .......... .......... .......... .......... 218 CATTGACCAC TAACTAAAGA AGGATAGGTC CTATAAAAAG ATCAAGGATC TTTCATTTAC 61425 .......... .......... .......... .......... .......... .......... 218 ATGTTTGGAA AAGAAAAACT TGTTTAAGGG CTATAGTTTA TAGTTCACTT AACCATAGAT 61485 .......... .......... .......... .......... .......... .......... 218 GATTGAAGCA CAATAAATAG CAAAATGAAA CCAACCTGAA ACCTTTTCAA GGCAATTGTT 61545 .......... .......... .......... .......... .......... .......... 218 AAGATATTTG GTGCCCTCCT GACCATAAGG CGCTTCCATG CTTTGACATA GTCATTGCAT 61605 .......... .......... .......... .......... .......... .......... 218 CTGCAAGTTT AACCGCATTT GTTGATTAAC GATTAGGTAG CAGTATCAAT CAACTGTGCC 61665 .......... .......... .......... .......... .......... .......... 218 TTGATTGGTT GTCAACCATC AGCAATTTAA CTAGTGAGCT TTAAATAACT CACACATGAT 61725 .......... .......... .......... .......... .......... .......... 218 AAAATTAAGC ATGCCACCCA ATAGAATTAA TGCATAGGAT AAATTGGAAA ACTAACATTA 61785 .......... .......... .......... .......... .......... .......... 218 AAGTTACTGT CCAACCACAA TTTTTGAAAT ATCTTTTTAT GATGTATGTG ACAATTATCC 61845 .......... .......... .......... .......... .......... .......... 218 TCAAAAACTC TCCAAATAAT AACTAAGCCA AAGAAATAGG ACAGAAGAGT GACATATGTG 61905 .......... .......... .......... .......... .......... .......... 218 AATCAAGATC TAGATGGATC CCTATCTTTA TCTCTATCCA CGGAGATACC TATCTATATG 61965 .......... .......... .......... .......... .......... .......... 218 GCGAGAGATT TATCTATGAA TCGGCCTAGA CTATCCTCTA TCAGGATAGA TATGTCCCTC 62025 .......... .......... .......... .......... .......... .......... 218 TGAGCGACTA AGCTGATCTT TATATGTTTT GGCCACCTCC CTTTCCGCTC CGAAGAAGAA 62085 .......... .......... .......... .......... .......... .......... 218 GGTTTGGATC TTTCAATCTT ATATCATGAG GTATGTGACC TATGTTAGGT CCATAAGATA 62145 .......... .......... .......... .......... .......... .......... 218 CCACAGCCTT AGGTGTTCTA TGATTCACCT CTGGATAATG AGTAGGTAGT TCGAACCTTT 62205 .......... .......... .......... .......... .......... .......... 218 TTATTTTGAT CTTATTAGTA AACTGATGGG GGGTTGCGGA GCAATAGGTC AAATTACTAT 62265 .......... .......... .......... .......... .......... .......... 218 ACAAAGAAGA GTTGTAAACT ATAGAACTTC TTGTTCAAGT AGGAATATTT CGGTTTTAAT 62325 .......... .......... .......... .......... .......... .......... 218 GTCTGTATTA ATCCACCATG CTATTAGATA CAGATGAACA CAAAAATCTG AGAATGGAAT 62385 .......... .......... .......... .......... .......... .......... 218 CAATCAGCAT TGTAAGGTAA ACATAAAACT ATACATCATT GCTCAAAGAA CACCAAAATG 62445 .......... .......... .......... .......... .......... .......... 218 GCACTCCAGA CTGTAAAAAG GATGTAATTA ATCACTGGCA TGGGAAACCT CACCCATCAC 62505 .......... .......... .......... .......... .......... .......... 218 ATTTATACAA GTTATCGCCA TCAAGCCATT CTCTAGCAGT GAATTGATCT AAGCACTCCT 62565 .......... .......... .......... .......... .......... .......... 218 CCAAAGATTC AGCATCCCCA TGAATCTCTA CTGTCAGATC CATCATATTT TCAATCTGAT 62625 .......... .......... .......... .......... .......... .......... 218 TTGAGACATT ACTGCATTCT GTACATATGA CCTAAAAACA GAAATAACTC ATTTAGGAAG 62685 .......... .......... .......... .......... .......... .......... 218 AGAAGGAAAG GGAAGAGATC AGAATAATGT AAGAGCGAAA ACACATATGC AGCTTGAAAT 62745 .......... .......... .......... .......... .......... .......... 218 ATCAAAAAAC ACAAAATACT TGGCAGAATA CCTAATTATC CCCTTAAACT TGACACCATT 62805 .......... .......... .......... .......... .......... .......... 218 TATTCGGTGG ATGCCTAAAT TATTTGTAGT CCCAATTACA CTGGACTTGG CTAGCATTCC 62865 .......... .......... .......... .......... .......... .......... 218 ATTATTTTAG CCAAATAAGA AAGGTTTAGC CAAAATAATA GGTTCCAAAT GTGTATTTCT 62925 .......... .......... .......... .......... .......... .......... 218 TTATCTATTT GGTTTAGATG CAGTGGCTAT TTATTCCAAA CAATTCCTTT TTTTCTGTTT 62985 .......... .......... .......... .......... .......... .......... 218 GACACAAATC TGTATTGGCT AGAGCTCCAT TATTTTTAGC CAAATAAAAA GTTCGAGCCA 63045 .......... .......... .......... .......... .......... .......... 218 GAATAAATAA TTCCAACTAT GTACTTCTCA AT 63077 |||||| || .......... .......... ....TTCTCA AT 226 hqPGS_C08HBa0037O11.1+_SGN-E210228+ (59927 60074) ******************************************************************************** EST sequence 52 +strand 696 n (File: SGN-E376578+) 1 TTTTAGTTTG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTC CAAGTGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC AAAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA GAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATTTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTTTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCCTTTTG ATTTCTGCTT 541 TCTTTTGACA AGTAAAAGAA TTTCATTACA TTGGCTACAT TAGCACCAAG TACCTCTTCA 601 AAGTGGATAC AAAATACACC AGCTCCCTAT ACTTCCTGCA AGGAGCTAAA GAGTACAAAT 661 TAATTAGGGA TAATACATAT ATTGGACCCT AAACTT Predicted gene structure (within gDNA segment 58617 to 68832): Exon 1 59927 60074 ( 148 n); cDNA 72 218 ( 147 n); score: 0.828 Intron 1 60075 63069 (2995 n); Pd: 0.282 (s: 0.64), Pa: 0.000 (s: 0) Exon 2 63070 63077 ( 8 n); cDNA 219 226 ( 8 n); score: 1.000 Intron 2 63078 63317 ( 240 n); Pd: 0.650 (s: 0), Pa: 0.000 (s: 0) Exon 3 63318 63329 ( 12 n); cDNA 227 238 ( 12 n); score: 0.750 Intron 3 63330 65758 (2429 n); Pd: 0.178 (s: 0), Pa: 0.000 (s: 0) Exon 4 65759 65774 ( 16 n); cDNA 239 254 ( 16 n); score: 0.812 Intron 4 65775 66919 (1145 n); Pd: 0.966 (s: 0), Pa: 0.000 (s: 0) Exon 5 66920 66952 ( 33 n); cDNA 255 288 ( 34 n); score: 0.591 MATCH C08HBa0037O11.1+ SGN-E376578+ 0.828 217 0.312 C PGS_C08HBa0037O11.1+_SGN-E376578+ (59927 60074,63070 63077,63318 63329,65759 65774,66920 66952) Alignment (genomic DNA sequence = upper lines): CATTTTGGTA CATTTGACAT AACTTTAATT TAGAACCACA AGATTAATTG GTCTTCTTTC 59986 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| |||||| ||| CATTTTGGTA CATTTGACAT AACTTTAATT TAGAACCACA AAATTAAAAA GTCTTC-TTC 130 TTTTCTTAA- CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAACGG AGGGAGTAAT 60045 ||||||||| |||||||||| |||||||||| |||||||||| ||||||| | |||||||| | TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA AGGGAGTACT 190 ATTTTTATTA TTCAAACAGA TCTATTGAGG CAAATGTAGC ATTTCACCGC ATATAGCAGC 60105 ||||| | || | | | ||| ATTTTGGAAA TTTAGA-GTT GGTTTTGTT. .......... .......... .......... 218 TTATTAAATT TTAAAGCTTC AGAGATGTAG TGTAGATTAT CAGCACAAAA GAATATAAAT 60165 .......... .......... .......... .......... .......... .......... 218 GGAAGTCCAA CATGCCACAT TCAGCAATCA ACCAATGTAT TTTGTGCATT GGGACGACAT 60225 .......... .......... .......... .......... .......... .......... 218 ACAACAATAA ACAAGAGGGT GTAGAGAAAA TGAGATGTTT CTACCTTGCA GTCATCGATC 60285 .......... .......... .......... .......... .......... .......... 218 CGGTGCCAAC TTCCACGAAA ATCCTTGATA TAGCATATGT AATGGCCGAA AAATGACGCA 60345 .......... .......... .......... .......... .......... .......... 218 TTCAACATAT CCACATGAAC AATAACTGCA TATAGCTTGT AAATATCATT GCCATCTCCT 60405 .......... .......... .......... .......... .......... .......... 218 GTTTCGCTCA TGTACGGATG GAGATCTAGT GTTTCAGGGA AAGTCACTCT CTTATTTAAT 60465 .......... .......... .......... .......... .......... .......... 218 TTGCCAAACC TACCACTCTG CATAGAGATA TTGGACATAA ATAAACAAAA CTAGCAGATT 60525 .......... .......... .......... .......... .......... .......... 218 TTGGAGCACA AACACACAGA GTTGCTTCCA AGAATAAAAT GGAATTTAGG GGGAGAAGAA 60585 .......... .......... .......... .......... .......... .......... 218 TGTTAATAGA GAGAAAGATG GTCCATAGTT ATTGTAATTT ACCCAAGAAT AAAACGGTAT 60645 .......... .......... .......... .......... .......... .......... 218 TAGGGATGAG GAATGTTAAT AGCAAGAAAG ACAGTCCCTC AGTTATTGTA AATCACCCAA 60705 .......... .......... .......... .......... .......... .......... 218 GAATAGAATA GAACTTAGGG GTGAGGAATG TTGAAAGAGA GAGAACATCC CTGATTTATT 60765 .......... .......... .......... .......... .......... .......... 218 GCAATTCACT CATCCCACAT AAAAAAGCAA ATTCTATTTC ACAGTTCTAA AAGAGATATA 60825 .......... .......... .......... .......... .......... .......... 218 ATAACAACAA TTAGAAACGC TACACTTAGG GATCAAATTA TCCTTTTGCT TTACAAGCTA 60885 .......... .......... .......... .......... .......... .......... 218 GGATATGCTT GGTATTCATA CAAACTGAGC TAAAGATAGG GCACAATGGA AGAAAAAGAT 60945 .......... .......... .......... .......... .......... .......... 218 CATCTAGGTG ATAGCTACTA GTTGATTAGC ATGCATTCGA TTGTCATCAA CTCTTGGTCA 61005 .......... .......... .......... .......... .......... .......... 218 ACTCATCAAT TCAGAATCTG GTTGTTGCTG GTTGTTGTTC ACACTTTTTT TTCTATCTTT 61065 .......... .......... .......... .......... .......... .......... 218 CACTTGAAGG ATTGAATGGA TTCCTTAAAC GGTTCAACTC TTTTGAACTA ATATTACATA 61125 .......... .......... .......... .......... .......... .......... 218 GTTGCCATGT GGTTGGCTAT TTGTCTTAAA TGAAAAGTTA AAAATGCAGT CCACTATTTG 61185 .......... .......... .......... .......... .......... .......... 218 TAGTATTTAC ATCTGTTATT GGAATATGGC CAAAAGAATC CCACCGGGGA AGAGGACCAC 61245 .......... .......... .......... .......... .......... .......... 218 CTTGATGTGG GGATGACTTG CTGGAGAGAT GAAAATTGGA AATGAAACTT TCTTCTAATA 61305 .......... .......... .......... .......... .......... .......... 218 CTCTCAAGTG CAGGACTAGT ATGACTCACT TTTTTCACTG GAGAGAATAG AGATATAGGT 61365 .......... .......... .......... .......... .......... .......... 218 CATTGACCAC TAACTAAAGA AGGATAGGTC CTATAAAAAG ATCAAGGATC TTTCATTTAC 61425 .......... .......... .......... .......... .......... .......... 218 ATGTTTGGAA AAGAAAAACT TGTTTAAGGG CTATAGTTTA TAGTTCACTT AACCATAGAT 61485 .......... .......... .......... .......... .......... .......... 218 GATTGAAGCA CAATAAATAG CAAAATGAAA CCAACCTGAA ACCTTTTCAA GGCAATTGTT 61545 .......... .......... .......... .......... .......... .......... 218 AAGATATTTG GTGCCCTCCT GACCATAAGG CGCTTCCATG CTTTGACATA GTCATTGCAT 61605 .......... .......... .......... .......... .......... .......... 218 CTGCAAGTTT AACCGCATTT GTTGATTAAC GATTAGGTAG CAGTATCAAT CAACTGTGCC 61665 .......... .......... .......... .......... .......... .......... 218 TTGATTGGTT GTCAACCATC AGCAATTTAA CTAGTGAGCT TTAAATAACT CACACATGAT 61725 .......... .......... .......... .......... .......... .......... 218 AAAATTAAGC ATGCCACCCA ATAGAATTAA TGCATAGGAT AAATTGGAAA ACTAACATTA 61785 .......... .......... .......... .......... .......... .......... 218 AAGTTACTGT CCAACCACAA TTTTTGAAAT ATCTTTTTAT GATGTATGTG ACAATTATCC 61845 .......... .......... .......... .......... .......... .......... 218 TCAAAAACTC TCCAAATAAT AACTAAGCCA AAGAAATAGG ACAGAAGAGT GACATATGTG 61905 .......... .......... .......... .......... .......... .......... 218 AATCAAGATC TAGATGGATC CCTATCTTTA TCTCTATCCA CGGAGATACC TATCTATATG 61965 .......... .......... .......... .......... .......... .......... 218 GCGAGAGATT TATCTATGAA TCGGCCTAGA CTATCCTCTA TCAGGATAGA TATGTCCCTC 62025 .......... .......... .......... .......... .......... .......... 218 TGAGCGACTA AGCTGATCTT TATATGTTTT GGCCACCTCC CTTTCCGCTC CGAAGAAGAA 62085 .......... .......... .......... .......... .......... .......... 218 GGTTTGGATC TTTCAATCTT ATATCATGAG GTATGTGACC TATGTTAGGT CCATAAGATA 62145 .......... .......... .......... .......... .......... .......... 218 CCACAGCCTT AGGTGTTCTA TGATTCACCT CTGGATAATG AGTAGGTAGT TCGAACCTTT 62205 .......... .......... .......... .......... .......... .......... 218 TTATTTTGAT CTTATTAGTA AACTGATGGG GGGTTGCGGA GCAATAGGTC AAATTACTAT 62265 .......... .......... .......... .......... .......... .......... 218 ACAAAGAAGA GTTGTAAACT ATAGAACTTC TTGTTCAAGT AGGAATATTT CGGTTTTAAT 62325 .......... .......... .......... .......... .......... .......... 218 GTCTGTATTA ATCCACCATG CTATTAGATA CAGATGAACA CAAAAATCTG AGAATGGAAT 62385 .......... .......... .......... .......... .......... .......... 218 CAATCAGCAT TGTAAGGTAA ACATAAAACT ATACATCATT GCTCAAAGAA CACCAAAATG 62445 .......... .......... .......... .......... .......... .......... 218 GCACTCCAGA CTGTAAAAAG GATGTAATTA ATCACTGGCA TGGGAAACCT CACCCATCAC 62505 .......... .......... .......... .......... .......... .......... 218 ATTTATACAA GTTATCGCCA TCAAGCCATT CTCTAGCAGT GAATTGATCT AAGCACTCCT 62565 .......... .......... .......... .......... .......... .......... 218 CCAAAGATTC AGCATCCCCA TGAATCTCTA CTGTCAGATC CATCATATTT TCAATCTGAT 62625 .......... .......... .......... .......... .......... .......... 218 TTGAGACATT ACTGCATTCT GTACATATGA CCTAAAAACA GAAATAACTC ATTTAGGAAG 62685 .......... .......... .......... .......... .......... .......... 218 AGAAGGAAAG GGAAGAGATC AGAATAATGT AAGAGCGAAA ACACATATGC AGCTTGAAAT 62745 .......... .......... .......... .......... .......... .......... 218 ATCAAAAAAC ACAAAATACT TGGCAGAATA CCTAATTATC CCCTTAAACT TGACACCATT 62805 .......... .......... .......... .......... .......... .......... 218 TATTCGGTGG ATGCCTAAAT TATTTGTAGT CCCAATTACA CTGGACTTGG CTAGCATTCC 62865 .......... .......... .......... .......... .......... .......... 218 ATTATTTTAG CCAAATAAGA AAGGTTTAGC CAAAATAATA GGTTCCAAAT GTGTATTTCT 62925 .......... .......... .......... .......... .......... .......... 218 TTATCTATTT GGTTTAGATG CAGTGGCTAT TTATTCCAAA CAATTCCTTT TTTTCTGTTT 62985 .......... .......... .......... .......... .......... .......... 218 GACACAAATC TGTATTGGCT AGAGCTCCAT TATTTTTAGC CAAATAAAAA GTTCGAGCCA 63045 .......... .......... .......... .......... .......... .......... 218 GAATAAATAA TTCCAACTAT GTACTTCTCA ATGCAATGAC TATTTGTTTC AACTATGCAA 63105 |||||| || .......... .......... ....TTCTCA AT........ .......... .......... 226 TTCTTCTTTT TCGGGCCAAA TGCCCAAATC GAAGTTTGAT CAAACTCCAA TATTTTTAGC 63165 .......... .......... .......... .......... .......... .......... 226 CAAATAAAAA CTCCAGTCTA CAATAGAATT CCAACTAATT TCTTTTACCA ATTTATACTG 63225 .......... .......... .......... .......... .......... .......... 226 AACAATTAAT GAAATAAAAA AAAGGTTAAA GATATATTTT ATTTTAATGA GAAGTGCAAC 63285 .......... .......... .......... .......... .......... .......... 226 GTAGCAACAT CTGTATATCA CTTCCATGGG ATGAGATCGT CAAGGCTAAG GGCTATTAAA 63345 ||||| || || .......... .......... .......... ..GAGATGGT GAAA...... .......... 238 TAACCAAATC TAAATGGGGT AATCAAGACT ACAAATAGTT AAGGTGTGCA CTGAATAAAC 63405 .......... .......... .......... .......... .......... .......... 238 GGGGCCAAGT TTAGGTGGGT AATTTGGTTA CTAGCAAAAT ATTTTCATGA TGCAATATTT 63465 .......... .......... .......... .......... .......... .......... 238 AAAGTATATA GGAAGTGTCA AGTCCTATTA TGATACTTTG GATAGTGACA TGCTTATGTC 63525 .......... .......... .......... .......... .......... .......... 238 TTCTCTTATC ATAAATTAAA ATTACCTGAG ATTGCAGGTG ACCACCAAAT ATGTGCTGAA 63585 .......... .......... .......... .......... .......... .......... 238 TAAGTGTTGT CTCCTGTGTG TTAGGAGGAA CAGCCTTCTC TCCACCAAAT TCATCAAGAC 63645 .......... .......... .......... .......... .......... .......... 238 ACACAGACTG CATCATGTCA ATAGCAAACC TACAAAAGAA CAAATTTTTC ATTATTTTAT 63705 .......... .......... .......... .......... .......... .......... 238 GTACCATAGC TTCTGGACAT TAAACACGGC TGATTAAACA CTATAGCAGA AAATACATAT 63765 .......... .......... .......... .......... .......... .......... 238 CAGACTTCCT ATAAGATACT CAACAAATTT ATTTTCTGAA AAGAAACATA CCTCATAAAT 63825 .......... .......... .......... .......... .......... .......... 238 TCATGCGCAT CCTCCTGCTT ACCATACCCG AGATTACCAC CAATATTAGG CAACCGTGAA 63885 .......... .......... .......... .......... .......... .......... 238 AGTATGTTGA TTGGTGAGAA GGGCTGCTGA CTCCGACTAG CCCGTTCTAC ATGGTGTTGA 63945 .......... .......... .......... .......... .......... .......... 238 AATTCACAAA GGAAGCACCA ACCATTCCGC CTACCTGAGG GAAGAGAGGG AAAAAGTGCA 64005 .......... .......... .......... .......... .......... .......... 238 TAACATAAAG AGCTATTCCA ATTACTTCAA AAAAAAGGCA GTAGCTTGTA TACTTTCTAA 64065 .......... .......... .......... .......... .......... .......... 238 ATGGATTACA TTCTCTCAGA TGGCCTTTTT CCAACAAGTA GGCAACAAGT GGCTTGGTAT 64125 .......... .......... .......... .......... .......... .......... 238 ATGTCAGACA TTGCAGAACC ACATTAGCGA AGCAACTGCA CAAGAACCAA AAATACATTT 64185 .......... .......... .......... .......... .......... .......... 238 AAAATACAGA TACAAAAGAC AGATGGCATA TTAAACAATT CTTGGTGGCT GGAGTGTAAC 64245 .......... .......... .......... .......... .......... .......... 238 TGAGGGAATA CCTGTTTCCA CAATTAAGGA GCCCACAAGG TGGAAAACCT GGGCTATCCC 64305 .......... .......... .......... .......... .......... .......... 238 AGTTAAAGAG TTCCAAGAAT TCCTCATATG GGAAAAGAAC CTAAACGATT TAACCAAACT 64365 .......... .......... .......... .......... .......... .......... 238 TTGGTCAGGT GCTGTGACAT AAATGCATAG TTGTGTAATT AACTAAGACG GAGAATACCT 64425 .......... .......... .......... .......... .......... .......... 238 TCTTCGAATG GTCTAGAACC TTAGAGGTTC CACTAGCATG AGAGAGTGAA ACAGCAGAAG 64485 .......... .......... .......... .......... .......... .......... 238 ATTTCCTCCC ATGCAAAGAA CTGCCTTTCC CAGATAACTG TAAATCCTTG CATTTAAATT 64545 .......... .......... .......... .......... .......... .......... 238 TGTGCCCTGA GTTCCAATGA GATCTCTGGC AAGCTTCAGA GCTATGAGAG GAAGAAAGAG 64605 .......... .......... .......... .......... .......... .......... 238 AGAGAGAGAG AGTAGAACCA ATCATTAGTT AACCAACACG GCACTCCAGA GTCCTGACTA 64665 .......... .......... .......... .......... .......... .......... 238 TATAAGGAAA AGGAAACAAA AGTATGGTCA CCCCTGAGGA GTGTTTTAGA AGTGAAACGT 64725 .......... .......... .......... .......... .......... .......... 238 GCAAAACAAC AAGGTCAAAT GGACTTTAAG CGACTAGTAC AATACACGTT TTTTTGAAGT 64785 .......... .......... .......... .......... .......... .......... 238 GAAGAGCACA AGTTACGTAA AATCACAAAA AGGAAAACGG AAAAATTTCC TTGTACTATA 64845 .......... .......... .......... .......... .......... .......... 238 CAAAATTGAA CTGTCATAAA AAAATCGACC GCACTGATCA AGGTCACAAT TGTTTATACT 64905 .......... .......... .......... .......... .......... .......... 238 TTGGATATAT TCAAATCCTG CCGTTAGAGA AAAATCTTTA CCAATATATC GTCACATATT 64965 .......... .......... .......... .......... .......... .......... 238 GTGTTTATAC CGTAAAATAG AAGATCCTGT TAAAAAGAAA ACAGAAGTAA CCATTGTGGA 65025 .......... .......... .......... .......... .......... .......... 238 CACTAATTGA TAGAAGTCAA GTTACTTTGT CAAGGGGCTC TATATTACAA TTTAGTATAA 65085 .......... .......... .......... .......... .......... .......... 238 ATAGTAGTAT ATCAGATGAT GCTAGATTGT CAGTTATAAA ATTAGACACA ATAACTGGTC 65145 .......... .......... .......... .......... .......... .......... 238 ACTGTTGTCG CCATAGAGAG AAAGGTATTT TATGGAATCC AAAATTAAAA TCTTCGTAAA 65205 .......... .......... .......... .......... .......... .......... 238 GATATTGATA TTGTTGTAGA TTGTGTAAAC ATACAAAAAA CCTATTGTCT GGGCTATAGA 65265 .......... .......... .......... .......... .......... .......... 238 TCCCTGTGTG TGTATATATA CATAAAGAGA GAGAGAGAGA TGCAATCATA GATCGTATAT 65325 .......... .......... .......... .......... .......... .......... 238 GTGGCCACAG GAAATTGTGC TGTCAAAGGT GAAAAGAGAG GGAAAAAACA ATTAGGCTTG 65385 .......... .......... .......... .......... .......... .......... 238 TTGAGGCAAT AAGTGCATAG CACAAATAAA GCATCGCTCT AGTGAAGAAA TTATGAATAC 65445 .......... .......... .......... .......... .......... .......... 238 CTAGATGTAG TTCAAAAATA GTAACTATAA ACCCAAATAA CAATTATATA GACAAAAAAA 65505 .......... .......... .......... .......... .......... .......... 238 TAACGAAAAA ACTAAGTGTA GGTGAATTAC TTATAGTTTA GTGCACTCTC TTTTGAGGCA 65565 .......... .......... .......... .......... .......... .......... 238 AACACGTACA TCCTACTTTG CATCTAACTT GAGGGCTTGA GCACGCCTCA ACCGAGCTTT 65625 .......... .......... .......... .......... .......... .......... 238 TGACAACAAT GCCGAGAAGT TATTTTATAT AATTAGGGAT CTATATAACA ATATAGGAGA 65685 .......... .......... .......... .......... .......... .......... 238 AAAAGCAGAA AAGTATAATC GTGCATTTAT AACCAACCAA ATTGCAGACT CGCAAAAGAT 65745 .......... .......... .......... .......... .......... .......... 238 TGACCGCTGT GGAGTGTGCA CGATAGAACG TATGTGGTTC AAGTACTGTT ATTATGAGAT 65805 |||| || | |||||| .......... ...GTGTACA CCATAGAAT. .......... .......... .......... 254 TAATAATAAT GTACAGATTT TCATATGGTA ACTAATAATA CTTGAATTGC TATGCAGGGA 65865 .......... .......... .......... .......... .......... .......... 254 CTAACAGTCT AGTAGTTAAT ATATATATTC TTATTCCATA TTCTTCCCCA CATAAACACA 65925 .......... .......... .......... .......... .......... .......... 254 ATATATCAGC AATGCAGAGC TTAATCCACA AATCAAGTGT TGCAAGTTTT TGTACCAACA 65985 .......... .......... .......... .......... .......... .......... 254 ACCAATATAG GTTTTAAATT AGTGAAGAAC TGTTTTCTTG TTCCAAATGA GGGATTGAAG 66045 .......... .......... .......... .......... .......... .......... 254 CTAAGTGTGT GTATATATAC AGCTGCCGTC AACACCAATA CCACTAGTAT TAACAGAAAA 66105 .......... .......... .......... .......... .......... .......... 254 AGTAAAAAAA AAAAGTGAGA GAAATTAATA ATTGTATAGA TATTATCACC ACATTGTATT 66165 .......... .......... .......... .......... .......... .......... 254 TGTGTTTAGG AATAATCATA CCAGTACTTA ACCATCTTGC AACGAGAGCA TTGTTTTTTG 66225 .......... .......... .......... .......... .......... .......... 254 GTGACATTAC TGCATACGGC GCAACCTTCC GGCGTTGCCG GGTCCATTCT GCGATCAACA 66285 .......... .......... .......... .......... .......... .......... 254 AAACCGGCCG TCGGCGAAGC AGAAGACTCA AAATTAGAGT CGTCGTCAAC GACAAAGTAC 66345 .......... .......... .......... .......... .......... .......... 254 TTAGAAGCGG TGCTCTTAAC AAGGTAAACC AGTGTTACTA TGACGGCTAT GGCCGTCAAT 66405 .......... .......... .......... .......... .......... .......... 254 ACAAATTGCA AGTAGGAATT CAGATCCACT GCTACATGCA TTAGAAATTT ATACTTTTTC 66465 .......... .......... .......... .......... .......... .......... 254 CTACTATGCG AAAAAACACT TTCTTCTTCC TCAGATAACA ACGCTCTCTC ATAAATTGCA 66525 .......... .......... .......... .......... .......... .......... 254 GCCTAGGGTT TCAATTCCTC CATTGATGAA TTCGACTAAT TTGGGGGAAT CTCCTATGGA 66585 .......... .......... .......... .......... .......... .......... 254 ATTTAAATTT CTGGAAAAAG AAGGAAGGTC TAATTTATAA TTTTTTTCCT TTTCTTTTTT 66645 .......... .......... .......... .......... .......... .......... 254 TCGATTGTCA AGTAAGCTAA TGTGCACCTT CTCAAACCAA AAAAAAAAAA ATACTAGCTT 66705 .......... .......... .......... .......... .......... .......... 254 TCAATTAGTT TTTTGTTTTG TTTTTTTTTC TTTGTCTCTT CGGAATAGAC TCACGATTTA 66765 .......... .......... .......... .......... .......... .......... 254 TTGTTAAAAA TAAAAGAAAT TTATTATCCG AGGCTTTACT AAATAGATTT ACAATTTTAT 66825 .......... .......... .......... .......... .......... .......... 254 TATTAAAAAT GAAAAAAATT TATTATTCGA GCAACTCCTT TAATTCTCCT ATTTTTCTTT 66885 .......... .......... .......... .......... .......... .......... 254 TAACTTTGAA GCTAATGAAA TAATTTTAAT TAAGTATGA- ATCTTCTTTT TGTTTCCAGA 66944 ||||| ||||| |||| | |||| .......... .......... .......... ....TATGAG ATCTTTTTTT CTTGTCCAAC 280 AGTATGTG 66952 | || TTGAAATG 288 hqPGS_C08HBa0037O11.1+_SGN-E376578+ (59927 60074) ******************************************************************************** EST sequence 98 +strand 528 n (File: SGN-E248609+) 1 CAAGCCACTT GTTGCCTACT TGTTGGAAAA AGGCCATCTG AGAGAATGTA GGCGGAATGG 61 TTGGTGCTTC CTTTGTGAAT TTCAACACCA TGTAGAACGG GCTAGTCGGA GTCAGCAGCC 121 CTTCTCACCA ATCAACATAC TTTCACGGTT GCCTAATATT GGTGGTAATC TCGGGTATGG 181 TAAGCAGGAG GATGCGCATG AATTTATGAG GTTTGCTATT GACATGATGC AGTCTGTGTG 241 TCTTGATGAA TTTGGTGGAG AGAAGGCTGT TCCTCCTAAC ACACAGGAGA CAACACTTAT 301 TCAGCACATA TTTGGTGGTC ACCTGCAATC TCAGGTCATA TGTACAGAAT GCAGTAATGT 361 CTCAAATCAG ATTGAAAATA TGATGGATCT GACAGTAGAG ATTCATGGGG ATGCTGAATC 421 TTTGGAGGAG TGCTTAGATC AATTCACTGC TAGAGAATGG CTTGATGGCG ATAACTTGTA 481 TAAATGTGAT GGATGCAATG ACTATGTCAA AGCATGGAAG CGCCTTAT Predicted gene structure (within gDNA segment 64721 to 60960): Exon 1 64121 64075 ( 47 n); cDNA 1 47 ( 47 n); score: 1.000 Intron 1 64074 63980 ( 95 n); Pd: 0.000 (s: 1.00), Pa: 0.893 (s: 1.00) Exon 2 63979 63817 ( 163 n); cDNA 48 210 ( 163 n); score: 1.000 Intron 2 63816 63675 ( 142 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 63674 63551 ( 124 n); cDNA 211 334 ( 124 n); score: 1.000 Intron 3 63550 62657 ( 894 n); Pd: 0.986 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 4 62656 62499 ( 158 n); cDNA 335 492 ( 158 n); score: 1.000 Intron 4 62498 61606 ( 893 n); Pd: 0.751 (s: 1.00), Pa: 0.991 (s: 0) Exon 5 61605 61570 ( 36 n); cDNA 493 528 ( 36 n); score: 1.000 MATCH C08HBa0037O11.1- SGN-E248609+ 1.000 528 1.000 C PGS_C08HBa0037O11.1-_SGN-E248609+ (64121 64075,63979 63817,63674 63551,62656 62499,61605 61570) Alignment (genomic DNA sequence = upper lines): CAAGCCACTT GTTGCCTACT TGTTGGAAAA AGGCCATCTG AGAGAATGTA ATCCATTTAG 64062 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAAGCCACTT GTTGCCTACT TGTTGGAAAA AGGCCATCTG AGAGAAT... .......... 47 AAAGTATACA AGCTACTGCC TTTTTTTTGA AGTAATTGGA ATAGCTCTTT ATGTTATGCA 64002 .......... .......... .......... .......... .......... .......... 47 CTTTTTCCCT CTCTTCCCTC AGGTAGGCGG AATGGTTGGT GCTTCCTTTG TGAATTTCAA 63942 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTAGGCGG AATGGTTGGT GCTTCCTTTG TGAATTTCAA 85 CACCATGTAG AACGGGCTAG TCGGAGTCAG CAGCCCTTCT CACCAATCAA CATACTTTCA 63882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCATGTAG AACGGGCTAG TCGGAGTCAG CAGCCCTTCT CACCAATCAA CATACTTTCA 145 CGGTTGCCTA ATATTGGTGG TAATCTCGGG TATGGTAAGC AGGAGGATGC GCATGAATTT 63822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTGCCTA ATATTGGTGG TAATCTCGGG TATGGTAAGC AGGAGGATGC GCATGAATTT 205 ATGAGGTATG TTTCTTTTCA GAAAATAAAT TTGTTGAGTA TCTTATAGGA AGTCTGATAT 63762 ||||| ATGAG..... .......... .......... .......... .......... .......... 210 GTATTTTCTG CTATAGTGTT TAATCAGCCG TGTTTAATGT CCAGAAGCTA TGGTACATAA 63702 .......... .......... .......... .......... .......... .......... 210 AATAATGAAA AATTTGTTCT TTTGTAGGTT TGCTATTGAC ATGATGCAGT CTGTGTGTCT 63642 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT TGCTATTGAC ATGATGCAGT CTGTGTGTCT 243 TGATGAATTT GGTGGAGAGA AGGCTGTTCC TCCTAACACA CAGGAGACAA CACTTATTCA 63582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGAATTT GGTGGAGAGA AGGCTGTTCC TCCTAACACA CAGGAGACAA CACTTATTCA 303 GCACATATTT GGTGGTCACC TGCAATCTCA GGTAATTTTA ATTTATGATA AGAGAAGACA 63522 |||||||||| |||||||||| |||||||||| | GCACATATTT GGTGGTCACC TGCAATCTCA G......... .......... .......... 334 TAAGCATGTC ACTATCCAAA GTATCATAAT AGGACTTGAC ACTTCCTATA TACTTTAAAT 63462 .......... .......... .......... .......... .......... .......... 334 ATTGCATCAT GAAAATATTT TGCTAGTAAC CAAATTACCC ACCTAAACTT GGCCCCGTTT 63402 .......... .......... .......... .......... .......... .......... 334 ATTCAGTGCA CACCTTAACT ATTTGTAGTC TTGATTACCC CATTTAGATT TGGTTATTTA 63342 .......... .......... .......... .......... .......... .......... 334 ATAGCCCTTA GCCTTGACGA TCTCATCCCA TGGAAGTGAT ATACAGATGT TGCTACGTTG 63282 .......... .......... .......... .......... .......... .......... 334 CACTTCTCAT TAAAATAAAA TATATCTTTA ACCTTTTTTT TATTTCATTA ATTGTTCAGT 63222 .......... .......... .......... .......... .......... .......... 334 ATAAATTGGT AAAAGAAATT AGTTGGAATT CTATTGTAGA CTGGAGTTTT TATTTGGCTA 63162 .......... .......... .......... .......... .......... .......... 334 AAAATATTGG AGTTTGATCA AACTTCGATT TGGGCATTTG GCCCGAAAAA GAAGAATTGC 63102 .......... .......... .......... .......... .......... .......... 334 ATAGTTGAAA CAAATAGTCA TTGCATTGAG AAGTACATAG TTGGAATTAT TTATTCTGGC 63042 .......... .......... .......... .......... .......... .......... 334 TCGAACTTTT TATTTGGCTA AAAATAATGG AGCTCTAGCC AATACAGATT TGTGTCAAAC 62982 .......... .......... .......... .......... .......... .......... 334 AGAAAAAAAG GAATTGTTTG GAATAAATAG CCACTGCATC TAAACCAAAT AGATAAAGAA 62922 .......... .......... .......... .......... .......... .......... 334 ATACACATTT GGAACCTATT ATTTTGGCTA AACCTTTCTT ATTTGGCTAA AATAATGGAA 62862 .......... .......... .......... .......... .......... .......... 334 TGCTAGCCAA GTCCAGTGTA ATTGGGACTA CAAATAATTT AGGCATCCAC CGAATAAATG 62802 .......... .......... .......... .......... .......... .......... 334 GTGTCAAGTT TAAGGGGATA ATTAGGTATT CTGCCAAGTA TTTTGTGTTT TTTGATATTT 62742 .......... .......... .......... .......... .......... .......... 334 CAAGCTGCAT ATGTGTTTTC GCTCTTACAT TATTCTGATC TCTTCCCTTT CCTTCTCTTC 62682 .......... .......... .......... .......... .......... .......... 334 CTAAATGAGT TATTTCTGTT TTTAGGTCAT ATGTACAGAA TGCAGTAATG TCTCAAATCA 62622 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTCAT ATGTACAGAA TGCAGTAATG TCTCAAATCA 369 GATTGAAAAT ATGATGGATC TGACAGTAGA GATTCATGGG GATGCTGAAT CTTTGGAGGA 62562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGAAAAT ATGATGGATC TGACAGTAGA GATTCATGGG GATGCTGAAT CTTTGGAGGA 429 GTGCTTAGAT CAATTCACTG CTAGAGAATG GCTTGATGGC GATAACTTGT ATAAATGTGA 62502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTTAGAT CAATTCACTG CTAGAGAATG GCTTGATGGC GATAACTTGT ATAAATGTGA 489 TGGGTGAGGT TTCCCATGCC AGTGATTAAT TACATCCTTT TTACAGTCTG GAGTGCCATT 62442 ||| TGG....... .......... .......... .......... .......... .......... 492 TTGGTGTTCT TTGAGCAATG ATGTATAGTT TTATGTTTAC CTTACAATGC TGATTGATTC 62382 .......... .......... .......... .......... .......... .......... 492 CATTCTCAGA TTTTTGTGTT CATCTGTATC TAATAGCATG GTGGATTAAT ACAGACATTA 62322 .......... .......... .......... .......... .......... .......... 492 AAACCGAAAT ATTCCTACTT GAACAAGAAG TTCTATAGTT TACAACTCTT CTTTGTATAG 62262 .......... .......... .......... .......... .......... .......... 492 TAATTTGACC TATTGCTCCG CAACCCCCCA TCAGTTTACT AATAAGATCA AAATAAAAAG 62202 .......... .......... .......... .......... .......... .......... 492 GTTCGAACTA CCTACTCATT ATCCAGAGGT GAATCATAGA ACACCTAAGG CTGTGGTATC 62142 .......... .......... .......... .......... .......... .......... 492 TTATGGACCT AACATAGGTC ACATACCTCA TGATATAAGA TTGAAAGATC CAAACCTTCT 62082 .......... .......... .......... .......... .......... .......... 492 TCTTCGGAGC GGAAAGGGAG GTGGCCAAAA CATATAAAGA TCAGCTTAGT CGCTCAGAGG 62022 .......... .......... .......... .......... .......... .......... 492 GACATATCTA TCCTGATAGA GGATAGTCTA GGCCGATTCA TAGATAAATC TCTCGCCATA 61962 .......... .......... .......... .......... .......... .......... 492 TAGATAGGTA TCTCCGTGGA TAGAGATAAA GATAGGGATC CATCTAGATC TTGATTCACA 61902 .......... .......... .......... .......... .......... .......... 492 TATGTCACTC TTCTGTCCTA TTTCTTTGGC TTAGTTATTA TTTGGAGAGT TTTTGAGGAT 61842 .......... .......... .......... .......... .......... .......... 492 AATTGTCACA TACATCATAA AAAGATATTT CAAAAATTGT GGTTGGACAG TAACTTTAAT 61782 .......... .......... .......... .......... .......... .......... 492 GTTAGTTTTC CAATTTATCC TATGCATTAA TTCTATTGGG TGGCATGCTT AATTTTATCA 61722 .......... .......... .......... .......... .......... .......... 492 TGTGTGAGTT ATTTAAAGCT CACTAGTTAA ATTGCTGATG GTTGACAACC AATCAAGGCA 61662 .......... .......... .......... .......... .......... .......... 492 CAGTTGATTG ATACTGCTAC CTAATCGTTA ATCAACAAAT GCGGTTAAAC TTGCAGATGC 61602 |||| .......... .......... .......... .......... .......... ......ATGC 496 AATGACTATG TCAAAGCATG GAAGCGCCTT AT 61570 |||||||||| |||||||||| |||||||||| || AATGACTATG TCAAAGCATG GAAGCGCCTT AT 528 hqPGS_C08HBa0037O11.1-_SGN-E248609+ (64121 64075,63979 63817,63674 63551,62656 62499,61605 61570) ******************************************************************************** EST sequence 50 -strand 587 n (File: SGN-E243114-) 1 TTTGTGAAAC TATTCCTCAA GCAAGGCAGC CGATAAGTCA TCGAAGGGTT TGTGTGAATA 61 ATGGAATGGT TAACATTACT CATTTTAAAC TCTCCCACGG TGATATAATA TCTTTTCAAG 121 AAAATGATGC GAGAACCCGC GGTGAAGAAA TAAAGAGATC CTTCTATATC GAAATCTCAG 181 TTGAGAAAAT AATAGGAAAA TTCCTGGATC ACCCGTGGAG AAGAACCAAA ACAGAATGGT 241 TCCGCCTACT CAAAACTAAG AGGGGATGCC GCCTACTACT AAAATCCCGG TTTTTGCAAC 301 AGTTGCGTTC TTCTATGCAA GAAGAAGACT TAGAAAGAAC AAAGAAGTTT GGATCCGAAA 361 AAGTATGCTT AGGCAGTTCT TTCGCTGAGC ACAACAGAAT GAAGAGGAAT TTTTATCATT 421 TCAAATCCCT ATTCTTATCG AAGAGAAGGA ACGAGAAAAA CCGAAATATT CCTACTCGAA 481 CAAGAAGTCC TATAGTTTAC AACTCTTCTT TATATAGTAA TTCGACCTAT TGCTCCGCAC 541 CCCCCCATCA GTTTACTAAA AAGATCAAAA TAAAAAGGAT CGAACTA Predicted gene structure (within gDNA segment 68692 to 61511): Exon 1 67587 67574 ( 14 n); cDNA 418 431 ( 14 n); score: 0.786 Intron 1 67573 62657 (4917 n); Pd: 0.683 (s: 0), Pa: 0.890 (s: 0) Exon 2 62656 62638 ( 19 n); cDNA 432 451 ( 20 n); score: 0.553 Intron 2 62637 62328 ( 310 n); Pd: 0.000 (s: 0), Pa: 0.243 (s: 0.88) Exon 3 62327 62192 ( 136 n); cDNA 452 587 ( 136 n); score: 0.919 MATCH C08HBa0037O11.1- SGN-E243114- 0.919 169 0.288 C PGS_C08HBa0037O11.1-_SGN-E243114- (67587 67574,62656 62638,62327 62192) Alignment (genomic DNA sequence = upper lines): ATTTCAAAAT CCAAGTTATA TCTCATACAT AAACAATGAA AGAACTATTT TTGATAATTT 67528 |||||||| || | ATTTCAAATC CCTA...... .......... .......... .......... .......... 431 TTTTTAAAAA ATTGTGATAG AGATGAACAA GGAAGAACAA CATAATTGAG AGGAAGATAT 67468 .......... .......... .......... .......... .......... .......... 431 TTTTGTCATG CTAGATTGTT TAGGTGAACA ATAATATTAG CACATATGAC AAAGATAACG 67408 .......... .......... .......... .......... .......... .......... 431 TCTTAAAAAT ATTTGTGATT CAAAATATAA ACGACAAGTA TGATTTCACT CCCAAACATA 67348 .......... .......... .......... .......... .......... .......... 431 AATAAAAATA TATATAACTA TTTTTAATAG TTTAAGAGTA ATTTTAACTC TCCCTTATTA 67288 .......... .......... .......... .......... .......... .......... 431 CTTTATTATT GAAGTGATTG GAATTTGGAG TAGGTTATAA TTAAGAAACC AAATGAAAGA 67228 .......... .......... .......... .......... .......... .......... 431 AAATTATTGA GAATGCTATT GGGCCCGTGC ATCACACTCC TAAAACTATC AACATCTTAT 67168 .......... .......... .......... .......... .......... .......... 431 TTTTTTTTTT TTTTATAAAA ATAAAGCTCA TTTTATATAA AAAGAATATT ACTTTTATTT 67108 .......... .......... .......... .......... .......... .......... 431 GCAATAACCA ATACCAATCA CACTCCTAAA ACTATTAATT TTTTTTTTAA TAAAACATAA 67048 .......... .......... .......... .......... .......... .......... 431 AAGCTCAATT TATAAAACTT TTATTTTGCA AAGAATAAAC AAAGACTATA CAATGCTAGT 66988 .......... .......... .......... .......... .......... .......... 431 TTTTTACAAA GAAAAAAATA ATTATTAAAA CTTGCCACAT ACTTCTGGAA ACAAAAAGAA 66928 .......... .......... .......... .......... .......... .......... 431 GATTCATACT TAATTAAAAT TATTTCATTA GCTTCAAAGT TAAAAGAAAA ATAGGAGAAT 66868 .......... .......... .......... .......... .......... .......... 431 TAAAGGAGTT GCTCGAATAA TAAATTTTTT TCATTTTTAA TAATAAAATT GTAAATCTAT 66808 .......... .......... .......... .......... .......... .......... 431 TTAGTAAAGC CTCGGATAAT AAATTTCTTT TATTTTTAAC AATAAATCGT GAGTCTATTC 66748 .......... .......... .......... .......... .......... .......... 431 CGAAGAGACA AAGAAAAAAA AACAAAACAA AAAACTAATT GAAAGCTAGT ATTTTTTTTT 66688 .......... .......... .......... .......... .......... .......... 431 TTTTGGTTTG AGAAGGTGCA CATTAGCTTA CTTGACAATC GAAAAAAAGA AAAGGAAAAA 66628 .......... .......... .......... .......... .......... .......... 431 AATTATAAAT TAGACCTTCC TTCTTTTTCC AGAAATTTAA ATTCCATAGG AGATTCCCCC 66568 .......... .......... .......... .......... .......... .......... 431 AAATTAGTCG AATTCATCAA TGGAGGAATT GAAACCCTAG GCTGCAATTT ATGAGAGAGC 66508 .......... .......... .......... .......... .......... .......... 431 GTTGTTATCT GAGGAAGAAG AAAGTGTTTT TTCGCATAGT AGGAAAAAGT ATAAATTTCT 66448 .......... .......... .......... .......... .......... .......... 431 AATGCATGTA GCAGTGGATC TGAATTCCTA CTTGCAATTT GTATTGACGG CCATAGCCGT 66388 .......... .......... .......... .......... .......... .......... 431 CATAGTAACA CTGGTTTACC TTGTTAAGAG CACCGCTTCT AAGTACTTTG TCGTTGACGA 66328 .......... .......... .......... .......... .......... .......... 431 CGACTCTAAT TTTGAGTCTT CTGCTTCGCC GACGGCCGGT TTTGTTGATC GCAGAATGGA 66268 .......... .......... .......... .......... .......... .......... 431 CCCGGCAACG CCGGAAGGTT GCGCCGTATG CAGTAATGTC ACCAAAAAAC AATGCTCTCG 66208 .......... .......... .......... .......... .......... .......... 431 TTGCAAGATG GTTAAGTACT GGTATGATTA TTCCTAAACA CAAATACAAT GTGGTGATAA 66148 .......... .......... .......... .......... .......... .......... 431 TATCTATACA ATTATTAATT TCTCTCACTT TTTTTTTTTA CTTTTTCTGT TAATACTAGT 66088 .......... .......... .......... .......... .......... .......... 431 GGTATTGGTG TTGACGGCAG CTGTATATAT ACACACACTT AGCTTCAATC CCTCATTTGG 66028 .......... .......... .......... .......... .......... .......... 431 AACAAGAAAA CAGTTCTTCA CTAATTTAAA ACCTATATTG GTTGTTGGTA CAAAAACTTG 65968 .......... .......... .......... .......... .......... .......... 431 CAACACTTGA TTTGTGGATT AAGCTCTGCA TTGCTGATAT ATTGTGTTTA TGTGGGGAAG 65908 .......... .......... .......... .......... .......... .......... 431 AATATGGAAT AAGAATATAT ATATTAACTA CTAGACTGTT AGTCCCTGCA TAGCAATTCA 65848 .......... .......... .......... .......... .......... .......... 431 AGTATTATTA GTTACCATAT GAAAATCTGT ACATTATTAT TAATCTCATA ATAACAGTAC 65788 .......... .......... .......... .......... .......... .......... 431 TTGAACCACA TACGTTCTAT CGTGCACACT CCACAGCGGT CAATCTTTTG CGAGTCTGCA 65728 .......... .......... .......... .......... .......... .......... 431 ATTTGGTTGG TTATAAATGC ACGATTATAC TTTTCTGCTT TTTCTCCTAT ATTGTTATAT 65668 .......... .......... .......... .......... .......... .......... 431 AGATCCCTAA TTATATAAAA TAACTTCTCG GCATTGTTGT CAAAAGCTCG GTTGAGGCGT 65608 .......... .......... .......... .......... .......... .......... 431 GCTCAAGCCC TCAAGTTAGA TGCAAAGTAG GATGTACGTG TTTGCCTCAA AAGAGAGTGC 65548 .......... .......... .......... .......... .......... .......... 431 ACTAAACTAT AAGTAATTCA CCTACACTTA GTTTTTTCGT TATTTTTTTG TCTATATAAT 65488 .......... .......... .......... .......... .......... .......... 431 TGTTATTTGG GTTTATAGTT ACTATTTTTG AACTACATCT AGGTATTCAT AATTTCTTCA 65428 .......... .......... .......... .......... .......... .......... 431 CTAGAGCGAT GCTTTATTTG TGCTATGCAC TTATTGCCTC AACAAGCCTA ATTGTTTTTT 65368 .......... .......... .......... .......... .......... .......... 431 CCCTCTCTTT TCACCTTTGA CAGCACAATT TCCTGTGGCC ACATATACGA TCTATGATTG 65308 .......... .......... .......... .......... .......... .......... 431 CATCTCTCTC TCTCTCTTTA TGTATATATA CACACACAGG GATCTATAGC CCAGACAATA 65248 .......... .......... .......... .......... .......... .......... 431 GGTTTTTTGT ATGTTTACAC AATCTACAAC AATATCAATA TCTTTACGAA GATTTTAATT 65188 .......... .......... .......... .......... .......... .......... 431 TTGGATTCCA TAAAATACCT TTCTCTCTAT GGCGACAACA GTGACCAGTT ATTGTGTCTA 65128 .......... .......... .......... .......... .......... .......... 431 ATTTTATAAC TGACAATCTA GCATCATCTG ATATACTACT ATTTATACTA AATTGTAATA 65068 .......... .......... .......... .......... .......... .......... 431 TAGAGCCCCT TGACAAAGTA ACTTGACTTC TATCAATTAG TGTCCACAAT GGTTACTTCT 65008 .......... .......... .......... .......... .......... .......... 431 GTTTTCTTTT TAACAGGATC TTCTATTTTA CGGTATAAAC ACAATATGTG ACGATATATT 64948 .......... .......... .......... .......... .......... .......... 431 GGTAAAGATT TTTCTCTAAC GGCAGGATTT GAATATATCC AAAGTATAAA CAATTGTGAC 64888 .......... .......... .......... .......... .......... .......... 431 CTTGATCAGT GCGGTCGATT TTTTTATGAC AGTTCAATTT TGTATAGTAC AAGGAAATTT 64828 .......... .......... .......... .......... .......... .......... 431 TTCCGTTTTC CTTTTTGTGA TTTTACGTAA CTTGTGCTCT TCACTTCAAA AAAACGTGTA 64768 .......... .......... .......... .......... .......... .......... 431 TTGTACTAGT CGCTTAAAGT CCATTTGACC TTGTTGTTTT GCACGTTTCA CTTCTAAAAC 64708 .......... .......... .......... .......... .......... .......... 431 ACTCCTCAGG GGTGACCATA CTTTTGTTTC CTTTTCCTTA TATAGTCAGG ACTCTGGAGT 64648 .......... .......... .......... .......... .......... .......... 431 GCCGTGTTGG TTAACTAATG ATTGGTTCTA CTCTCTCTCT CTCTCTTTCT TCCTCTCATA 64588 .......... .......... .......... .......... .......... .......... 431 GCTCTGAAGC TTGCCAGAGA TCTCATTGGA ACTCAGGGCA CAAATTTAAA TGCAAGGATT 64528 .......... .......... .......... .......... .......... .......... 431 TACAGTTATC TGGGAAAGGC AGTTCTTTGC ATGGGAGGAA ATCTTCTGCT GTTTCACTCT 64468 .......... .......... .......... .......... .......... .......... 431 CTCATGCTAG TGGAACCTCT AAGGTTCTAG ACCATTCGAA GAAGGTATTC TCCGTCTTAG 64408 .......... .......... .......... .......... .......... .......... 431 TTAATTACAC AACTATGCAT TTATGTCACA GCACCTGACC AAAGTTTGGT TAAATCGTTT 64348 .......... .......... .......... .......... .......... .......... 431 AGGTTCTTTT CCCATATGAG GAATTCTTGG AACTCTTTAA CTGGGATAGC CCAGGTTTTC 64288 .......... .......... .......... .......... .......... .......... 431 CACCTTGTGG GCTCCTTAAT TGTGGAAACA GGTATTCCCT CAGTTACACT CCAGCCACCA 64228 .......... .......... .......... .......... .......... .......... 431 AGAATTGTTT AATATGCCAT CTGTCTTTTG TATCTGTATT TTAAATGTAT TTTTGGTTCT 64168 .......... .......... .......... .......... .......... .......... 431 TGTGCAGTTG CTTCGCTAAT GTGGTTCTGC AATGTCTGAC ATATACCAAG CCACTTGTTG 64108 .......... .......... .......... .......... .......... .......... 431 CCTACTTGTT GGAAAAAGGC CATCTGAGAG AATGTAATCC ATTTAGAAAG TATACAAGCT 64048 .......... .......... .......... .......... .......... .......... 431 ACTGCCTTTT TTTTGAAGTA ATTGGAATAG CTCTTTATGT TATGCACTTT TTCCCTCTCT 63988 .......... .......... .......... .......... .......... .......... 431 TCCCTCAGGT AGGCGGAATG GTTGGTGCTT CCTTTGTGAA TTTCAACACC ATGTAGAACG 63928 .......... .......... .......... .......... .......... .......... 431 GGCTAGTCGG AGTCAGCAGC CCTTCTCACC AATCAACATA CTTTCACGGT TGCCTAATAT 63868 .......... .......... .......... .......... .......... .......... 431 TGGTGGTAAT CTCGGGTATG GTAAGCAGGA GGATGCGCAT GAATTTATGA GGTATGTTTC 63808 .......... .......... .......... .......... .......... .......... 431 TTTTCAGAAA ATAAATTTGT TGAGTATCTT ATAGGAAGTC TGATATGTAT TTTCTGCTAT 63748 .......... .......... .......... .......... .......... .......... 431 AGTGTTTAAT CAGCCGTGTT TAATGTCCAG AAGCTATGGT ACATAAAATA ATGAAAAATT 63688 .......... .......... .......... .......... .......... .......... 431 TGTTCTTTTG TAGGTTTGCT ATTGACATGA TGCAGTCTGT GTGTCTTGAT GAATTTGGTG 63628 .......... .......... .......... .......... .......... .......... 431 GAGAGAAGGC TGTTCCTCCT AACACACAGG AGACAACACT TATTCAGCAC ATATTTGGTG 63568 .......... .......... .......... .......... .......... .......... 431 GTCACCTGCA ATCTCAGGTA ATTTTAATTT ATGATAAGAG AAGACATAAG CATGTCACTA 63508 .......... .......... .......... .......... .......... .......... 431 TCCAAAGTAT CATAATAGGA CTTGACACTT CCTATATACT TTAAATATTG CATCATGAAA 63448 .......... .......... .......... .......... .......... .......... 431 ATATTTTGCT AGTAACCAAA TTACCCACCT AAACTTGGCC CCGTTTATTC AGTGCACACC 63388 .......... .......... .......... .......... .......... .......... 431 TTAACTATTT GTAGTCTTGA TTACCCCATT TAGATTTGGT TATTTAATAG CCCTTAGCCT 63328 .......... .......... .......... .......... .......... .......... 431 TGACGATCTC ATCCCATGGA AGTGATATAC AGATGTTGCT ACGTTGCACT TCTCATTAAA 63268 .......... .......... .......... .......... .......... .......... 431 ATAAAATATA TCTTTAACCT TTTTTTTATT TCATTAATTG TTCAGTATAA ATTGGTAAAA 63208 .......... .......... .......... .......... .......... .......... 431 GAAATTAGTT GGAATTCTAT TGTAGACTGG AGTTTTTATT TGGCTAAAAA TATTGGAGTT 63148 .......... .......... .......... .......... .......... .......... 431 TGATCAAACT TCGATTTGGG CATTTGGCCC GAAAAAGAAG AATTGCATAG TTGAAACAAA 63088 .......... .......... .......... .......... .......... .......... 431 TAGTCATTGC ATTGAGAAGT ACATAGTTGG AATTATTTAT TCTGGCTCGA ACTTTTTATT 63028 .......... .......... .......... .......... .......... .......... 431 TGGCTAAAAA TAATGGAGCT CTAGCCAATA CAGATTTGTG TCAAACAGAA AAAAAGGAAT 62968 .......... .......... .......... .......... .......... .......... 431 TGTTTGGAAT AAATAGCCAC TGCATCTAAA CCAAATAGAT AAAGAAATAC ACATTTGGAA 62908 .......... .......... .......... .......... .......... .......... 431 CCTATTATTT TGGCTAAACC TTTCTTATTT GGCTAAAATA ATGGAATGCT AGCCAAGTCC 62848 .......... .......... .......... .......... .......... .......... 431 AGTGTAATTG GGACTACAAA TAATTTAGGC ATCCACCGAA TAAATGGTGT CAAGTTTAAG 62788 .......... .......... .......... .......... .......... .......... 431 GGGATAATTA GGTATTCTGC CAAGTATTTT GTGTTTTTTG ATATTTCAAG CTGCATATGT 62728 .......... .......... .......... .......... .......... .......... 431 GTTTTCGCTC TTACATTATT CTGATCTCTT CCCTTTCCTT CTCTTCCTAA ATGAGTTATT 62668 .......... .......... .......... .......... .......... .......... 431 TCTGTTTTTA GGTCATAT-G TACAGAATGC AGTAATGTCT CAAATCAGAT TGAAAATATG 62609 || ||| | | |||| | | .......... .TTCTTATCG AAGAGAAGGA A......... .......... .......... 451 ATGGATCTGA CAGTAGAGAT TCATGGGGAT GCTGAATCTT TGGAGGAGTG CTTAGATCAA 62549 .......... .......... .......... .......... .......... .......... 451 TTCACTGCTA GAGAATGGCT TGATGGCGAT AACTTGTATA AATGTGATGG GTGAGGTTTC 62489 .......... .......... .......... .......... .......... .......... 451 CCATGCCAGT GATTAATTAC ATCCTTTTTA CAGTCTGGAG TGCCATTTTG GTGTTCTTTG 62429 .......... .......... .......... .......... .......... .......... 451 AGCAATGATG TATAGTTTTA TGTTTACCTT ACAATGCTGA TTGATTCCAT TCTCAGATTT 62369 .......... .......... .......... .......... .......... .......... 451 TTGTGTTCAT CTGTATCTAA TAGCATGGTG GATTAATACA GACATTAAAA CCGAAATATT 62309 | |||| |||||||||| .......... .......... .......... .......... .CGAGAAAAA CCGAAATATT 470 CCTACTTGAA CAAGAAGTTC TATAGTTTAC AACTCTTCTT TGTATAGTAA TTTGACCTAT 62249 |||||| ||| |||||||| | |||||||||| |||||||||| | |||||||| || ||||||| CCTACTCGAA CAAGAAGTCC TATAGTTTAC AACTCTTCTT TATATAGTAA TTCGACCTAT 530 TGCTCCGCAA CCCCCCATCA GTTTACTAAT AAGATCAAAA TAAAAAGGTT CGAACTA 62192 ||||||||| |||||||||| ||||||||| |||||||||| |||||||| | ||||||| TGCTCCGCAC CCCCCCATCA GTTTACTAAA AAGATCAAAA TAAAAAGGAT CGAACTA 587 hqPGS_C08HBa0037O11.1-_SGN-E243114- (62327 62192) ******************************************************************************** EST sequence 44 +strand 552 n (File: SGN-E205976+) 1 TTGCTCGTTT CTCAGTTTGC TGCACACAAG AAGACAAGAA GCACAAATAA TCAATAGCAA 61 ATGTACGCAG CAAAAGAAGC CAAGATCGAG TCCAAGATCG AGTAAAATGG GTCTGTCAAG 121 TAATCAAGAA AATAGAGTGA TTTGTCAAAG CCAAAAATAA TATATTAAAG GTATAAGTTG 181 ATACAAATAA GGAAAACCTT AAATATATTA GTAAGGAAAG AAGTTGTATA TAATAAGGAT 241 TGTGCTTTAA AAGGGAATCC TTGTTTAATA ATAACTTCCT TATCTTATCT GATAAGGACT 301 GAAGGCAAAA GGAACTCTAT AAGAAGAAGA AGACGCTGAT GAAGAAAATG AGGACTTCAT 361 GCAGAGAACA AGGGAGAATT ATTCATCAAA TTGAAGTCTT CAAGGTTGAT AGGATTACTA 421 CGTGTAAAAC ATTCTTGAGT AAGAAGGTTT TATCGTGTAG AACTATTTGT CTTGTTTTTG 481 TTCTTAATTG TAGTTTACAG TTTATTGTAC AAAGGGTGGG TTTGGCTCTT TGTAGGGTTG 541 AGTGTTAGTA AG Predicted gene structure (within gDNA segment 67192 to 69197): Exon 1 68150 68587 ( 438 n); cDNA 92 552 ( 461 n); score: 0.823 MATCH C08HBa0037O11.1+ SGN-E205976+ 0.823 438 0.793 C PGS_C08HBa0037O11.1+_SGN-E205976+ (68150 68587) Alignment (genomic DNA sequence = upper lines): CCAAGCTCGA GTAAAATGGG TCAGCCAAGT AATCAAGAAA ATAGAGTTAT TTGTCAAAGC 68209 ||||| |||| |||||||||| || | ||||| |||||||||| ||||||| || |||||||||| CCAAGATCGA GTAAAATGGG TCTGTCAAGT AATCAAGAAA ATAGAGTGAT TTGTCAAAGC 151 CAAAAATAAT ATATTAAAGG TATAAGTTGA TACAAA-AAG GAAAACCTTA AATATATTAT 68268 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||| CAAAAATAAT ATATTAAAGG TATAAGTTGA TACAAATAAG GAAAACCTTA AATATATTAG 211 TAA-G---G- A-TTG----- --T----A-- ---CTTTAAA AGGGAATCCT TGTTTAACAA 68306 ||| | | | ||| | | ||||||| |||||||||| ||||||| || TAAGGAAAGA AGTTGTATAT AATAAGGATT GTGCTTTAAA AGGGAATCCT TGTTTAATAA 271 TAACTTCTTT ACCTTATCTG ATAAGGACTG AAGGCAAAAG GAACTCTATA AGAAGAAGAA 68366 ||||||| || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTTCCTT ATCTTATCTG ATAAGGACTG AAGGCAAAAG GAACTCTATA AGAAGAAGAA 331 GACGCTGATT GAAAATTTCA CGACTTCACG CAGAGAACAA GGGAGAATTA TTCATCAAAT 68426 ||||||||| | || | | ||||||| | |||||||||| |||||||||| |||||||||| GACGCTGATG AAGAAAATGA GGACTTCATG CAGAGAACAA GGGAGAATTA TTCATCAAAT 391 TGAAGTCTTC AAGGTTGATA GGATTACTAC GTTTAAAACA TTCTTGAGTA AGAAGGTTTT 68486 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TGAAGTCTTC AAGGTTGATA GGATTACTAC GTGTAAAACA TTCTTGAGTA AGAAGGTTTT 451 ATCGTATATA ACTATTTGCC TTGTTTTTGT TCTTAATTGT AGTTTACAGT TTATTGTACA 68546 ||||| || | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATCGTGTAGA ACTATTTGTC TTGTTTTTGT TCTTAATTGT AGTTTACAGT TTATTGTACA 511 AAGGGTGGGT TTGGCTCTTT GTAGGGTTGA GTGTTAGTAA G 68587 |||||||||| |||||||||| |||||||||| |||||||||| | AAGGGTGGGT TTGGCTCTTT GTAGGGTTGA GTGTTAGTAA G 552 hqPGS_C08HBa0037O11.1+_SGN-E205976+ (68150 68587) ******************************************************************************** EST sequence 100 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 66010 to 72292): Exon 1 70804 70901 ( 98 n); cDNA 395 492 ( 98 n); score: 0.893 Intron 1 70902 70949 ( 48 n); Pd: 0.724 (s: 0.88), Pa: 0.000 (s: 0.92) Exon 2 70950 71018 ( 69 n); cDNA 493 561 ( 69 n); score: 0.884 Intron 2 71019 71170 ( 152 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0.78) Exon 3 71171 71221 ( 51 n); cDNA 562 610 ( 49 n); score: 0.765 Intron 3 71222 71638 ( 417 n); Pd: 0.000 (s: 0.76), Pa: 0.689 (s: 0) Exon 4 71639 71650 ( 12 n); cDNA 611 622 ( 12 n); score: 0.833 MATCH C08HBa0037O11.1+ SGN-E578389- 0.860 230 0.328 C PGS_C08HBa0037O11.1+_SGN-E578389- (70804 70901,70950 71018,71171 71221,71639 71650) Alignment (genomic DNA sequence = upper lines): TAATTAA-GG TCAACTTTCA CATATAGCAA ACAAAAAATT CATATTTGTA TAATATAGCA 70862 ||||||| || ||||||||| |||||| ||| |||||||||| |||||||||| | |||| || TAATTAATGG GCAACTTTCA CATATAACAA ACAAAAAATT CATATTTGTA TGCTATAACA 454 AACTTTGCAT AATTGCGCTC CATAGCAAAC ATAAAAACTG TATAATTCGC TATACATATA 70922 || ||||||| |||||||||| |||||||||| || |||| | AAGTTTGCAT AATTGCGCTC CATAGCAAAC AT-AAAATT. .......... .......... 492 CAAGTGTATA ATTCGCTGGC CTAAATTGTA TAATTCGCCG GCCTAAATTG TATAATTCGC 70982 ||| |||||||| | ||||||||| |||||||||| .......... .......... .......GTA TAATTCGCTG ACCTAAATTG TATAATTCGC 525 TAGCCTATTT CGCTGAAGTT GTATAATTTG CTTTGCATAT AGTTGAATCG AATTAAAATG 71042 | |||||||| ||||| | || |||||||| | || | | TGGCCTATTT CGCTGCAATT GTATAATTCG CTATCC.... .......... .......... 561 TATGTATATT GCATAATTAT AAGTTTATAG CAAAAAGATA TATGTTTTTC TCGCTTTATA 71102 .......... .......... .......... .......... .......... .......... 561 CAAAAACAGA AACACAATAT ATACACTTCT GTTGTATAAA GCTAGAGAAA ATTGTATTTT 71162 .......... .......... .......... .......... .......... .......... 561 ACTGCAATTG TATAATTCGC AATTGTATAA TTCGTTGGCC TTTTTCTCTG CAATTTTTGA 71222 | | ||| | | |||||||||| |||| | ||| | |||| ||| |||| || ........TA TTTAACT-AC AATTGTATAA TTCGCT-GCC TATTTCGCTG CAATATTAT. 610 AGTAAAATGT TTGTAAATTG TATAATTAAG TGTATAACAC GAAGATATAC ATTTTTGCAT 71282 .......... .......... .......... .......... .......... .......... 610 TTGTATATAC AATTTTCTCT CGCTTTATAC AAAACAGAAA CAAAATTATA CACTTCTGTG 71342 .......... .......... .......... .......... .......... .......... 610 TATAAAGCGA GAGAGGCGAG CGAGAATGGA AAGTGGCGAG CGAGATTCCT GGGAGAGAGA 71402 .......... .......... .......... .......... .......... .......... 610 CGCTGGCAAA TTTTAGATAA TGTTTGCTAT GGAGCACAAT TAAATCAAAC CCTAACTATT 71462 .......... .......... .......... .......... .......... .......... 610 CTATTTAATT TAGATTATTA GTTTACTATT TTATACAATT TTCCCGATAA TTAATTATAT 71522 .......... .......... .......... .......... .......... .......... 610 TGGGCCCGTG AATGGGCCTT CAATTATCTA GTATATATAT ATATATATTA AAAGGTTGAT 71582 .......... .......... .......... .......... .......... .......... 610 GAATATACTT AGCTAAACAT GTATTGATTA TATTGACCTA ATTTTTTTTA ATGTAGTTTA 71642 | || .......... .......... .......... .......... .......... ......TATA 614 AAACTTGC 71650 ||| |||| AAATTTGC 622 hqPGS_C08HBa0037O11.1+_SGN-E578389- (70804 70901,70950 71018,71171 71221) ******************************************************************************** EST sequence 104 -strand 680 n (File: SGN-E379427-) 1 AAAACTTGCA AAACGGAATG GGCCTATTCA CATCAGATCA AGTTTTGTTC ACAGACCAAA 61 GGTCTAAAGG TACTGTTAAT TTGTGGGCCA GTAATTCTAA AGTTTTTGAA ACCGCATTTG 121 TTAATGCGAT GACTAAATTG GGCCGAGTTG GTGTGAAGAC GGGTAAGAAT GGAAATATTC 181 GTATAGACTG TGGAGCATTT AATTAAGGGC AACTTTCACG TATAGCAAAT AAAAAATTCA 241 TATTTGTATG TTATAACAAA GTTTGCATAA TTGCGCTCCA TAGCAAACAT AAAACTGTAT 301 AATTCGCTAT ACATATACAA TTGTATAATT CGCTGGCCTA AATTGTATAA TTTGATGGCC 361 TATTTCGCTG CAATTGTATA ATTCGCTATC TTCATTCACT GCGATTGTGT AATGCACAAT 421 CGTATAAATC GCTGCTTATT TCGCTGCAAT ATTTTTATAA ATTTGCTTTG CATACCGTTG 481 AATCGAATTA AAATGTATGT ATATTGCATA ATTATAAGTG TATGGCAAGA ATATATATGT 541 TTTTGTCTCG CTTTATACAA AAACAAAAAC ACAATATATA CACTTCTGTT GTATAAAGTT 601 AGAGAAAATT GTATTTCACT GCAATTATAT AATTCACAAT TGTATAATTC GTTGCCCTTT 661 TTCTGAACAA TATTTGAAGT Predicted gene structure (within gDNA segment 67925 to 72401): Exon 1 70804 70971 ( 168 n); cDNA 200 366 ( 167 n); score: 0.911 Intron 1 70972 71126 ( 155 n); Pd: 0.013 (s: 0.86), Pa: 0.000 (s: 0.62) Exon 2 71127 71356 ( 230 n); cDNA 367 605 ( 239 n); score: 0.576 MATCH C08HBa0037O11.1+ SGN-E379427- 0.717 398 0.585 C PGS_C08HBa0037O11.1+_SGN-E379427- (70804 70971,71127 71356) Alignment (genomic DNA sequence = upper lines): TAATTAAGGT CAACTTTCAC ATATAGCAAA CAAAAAATTC ATATTTGTAT AATATAGCAA 70863 ||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||| ||| TAATTAAGGG CAACTTTCAC GTATAGCAAA TAAAAAATTC ATATTTGTAT GTTATAACAA 259 ACTTTGCATA ATTGCGCTCC ATAGCAAACA TAAAAACTGT ATAATTCGCT ATACATATAC 70923 | |||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AGTTTGCATA ATTGCGCTCC ATAGCAAACA T-AAAACTGT ATAATTCGCT ATACATATAC 318 AAGTGTATAA TTCGCTGGCC TAAATTGTAT AATTCGCCGG CCTAAATTGT ATAATTCGCT 70983 || ||||||| |||||||||| |||||||||| |||| | || |||| | AATTGTATAA TTCGCTGGCC TAAATTGTAT AATTTGATGG CCTATTTC.. .......... 366 AGCCTATTTC GCTGAAGTTG TATAATTTGC TTTGCATATA GTTGAATCGA ATTAAAATGT 71043 .......... .......... .......... .......... .......... .......... 366 ATGTATATTG CATAATTATA AGTTTATAGC AAAAAGATAT ATGTTTTTCT CGCTTTATAC 71103 .......... .......... .......... .......... .......... .......... 366 AAAAACAGAA ACACAATATA TACACTTCTG TTGTATAAAG CTAGAGAAAA TTGTATTTTA 71163 || | |||||| || | | | || | || | .......... .......... ...GCTGCAA TTGTAT-AA- TTCG-CTATC TT-CA-TTCA 398 CTGCAATTGT ATAATTCGCA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC AATTTTTGAA 71223 |||| ||||| |||| | || || |||||| ||| | || | |||| |||| ||| ||| | CTGCGATTGT GTAATGCACA ATCGTATAAA TCGCT-GCTT ATTTCGCTGC AATATTTTTA 457 GTAAAATG-T TTG--TA-AA TTGTAT--AA TT-AAGTGTA T-AACA-CG- A-AGATATAC 71272 || || | ||| || ||| || || || || |||| | | | | | | |||| TAAATTTGCT TTGCATACCG TTGAATCGAA TTAAAATGTA TGTATATTGC ATAATTATAA 517 AT-TTTTGCA TTTGTATATA CAATTTTCTC TCGCTTTATA C-AAAACAGA AACAAAAT-T 71329 | | | ||| |||||| |||| || |||||||||| | |||||| | |||| ||| | GTGTATGGCA AGAATATATA TGTTTTTGTC TCGCTTTATA CAAAAACAAA AACACAATAT 577 ATACACTTCT G-TGTATAAA GCGAGAGA 71356 |||||||||| | |||||||| | ||||| ATACACTTCT GTTGTATAAA GTTAGAGA 605 hqPGS_C08HBa0037O11.1+_SGN-E379427- (70804 70971) ******************************************************************************** EST sequence 55 +strand 530 n (File: SGN-E393065+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG CGCATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC TAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGACAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGCATAAT TCCTTGGCCT TTTTCACTGC 181 CATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTCACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATATAAAC ATAATCTATA 301 CACTTCTGTG TATATAACGA GATATGCCAG CGATAATGGA AAATGGCCAG CGAGATTTTT 361 GGGAGGCAGA CGCCTGACCA ACTTTAGCTA ACGTTTGCCA TGAAGCACAA TAAGATCTAA 421 CTCTATCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TGTCCCATAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA Predicted gene structure (within gDNA segment 70436 to 74116): Exon 1 71036 71511 ( 476 n); cDNA 1 479 ( 479 n); score: 0.853 MATCH C08HBa0037O11.1+ SGN-E393065+ 0.853 476 0.898 C PGS_C08HBa0037O11.1+_SGN-E393065+ (71036 71511) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTGCA TAATTATAAG TTTATAGCAA AAAGATATAT GTT-TT-TCT 71093 |||||||||| |||||||||| |||||||||| || |||| || |||||| ||| || ||| TAAAATGTAT GTATATTGCA TAATTATAAG CGCATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATA TACACTTCTG TTGTATAAAG CTAGAGAAAA 71153 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| |||| |||| CGCTTTATAC TAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGACAAAA 120 TTGTATTTTA CTGCAATTGT ATAATTCGCA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 71213 |||||||| | |||||||| | ||||||| || |||| ||||| || ||||||| ||||| |||| TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGCATAAT TCCTTGGCCT TTTTCACTGC 180 AATTTTTGAA GTAAAATGTT TGTAAATTGT ATAATTAAGT GTATAACACG AAGATATACA 71273 || |||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | CATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 240 TTTTTGCATT TGTATATACA ATTTTCTCTC GCTTTATACA AAACAGAAAC AAAAT-TATA 71332 |||| ||| |||||||||| |||||||||| |||||||||| ||| | |||| | ||| |||| TTTTCACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATATAAAC ATAATCTATA 300 CACTTCTGTG TATAAAGCGA GAGAGGCGAG CGAGAATGGA AAGTGGCGAG CGAGATTCCT 71392 |||||||||| |||| | ||| || | || || ||| |||||| || |||| || ||||||| | CACTTCTGTG TATATAACGA GATATGCCAG CGATAATGGA AAATGGCCAG CGAGATTTTT 360 GGGAGAGAGA CG-CTGGCAA ATTTTAGATA ATGTTTGCTA TGGAGCACAA TTAAATCAAA 71451 ||||| ||| || ||| | | | ||||| || | |||||| | || ||||||| | | ||| || GGGAGGCAGA CGCCTGACCA ACTTTAGCTA ACGTTTGCCA TGAAGCACAA TAAGATCTAA 420 CCCTAACTAT TCTATTTAAT TTAGATTATT AGTTTACTAT TTTATACAAT TTTCCCGATA 71511 | ||| ||| || |||| | |||||||| | ||||| |||| | |||||||| || || ||| CTCTATCTAC TCCATTT-AG TTAGATTACT AGTTTGCTAT TATATACAAT TTGTCCCATA 479 hqPGS_C08HBa0037O11.1+_SGN-E393065+ (71036 71511) ******************************************************************************** EST sequence 103 -strand 750 n (File: SGN-E379112-) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ANCACAATAT ATACACTTCT GTTGTATAAA GTTAGAGAAA 121 ATTGTATTTC ACTGCAATTA TATAATTCAC AATTGTATAA TTCGTTGGCC TTTTTCTCTG 181 CAATATTTGA AGTAAAATGT TTGTAATTTG TATAATTAAG TGTATAACAC GAAGATATAT 241 ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAATAGAAA CAGAATTTAT 301 ACACTTCTGT GTATATAGCG AGATAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTT 361 TGGGAGGGAG ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA 421 ACTCTAGCTA CTCCATTTAG TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCCAAGA 481 GCTTGTATAA AATGGAGAGA AGGAAAAAGA TTTAGAATTA TCGCTTGTGA ATGACAAGAA 541 AAGATTGCAA AATAAGAATT TAGTTGTTTT GCTTTAATAA GTTCCTTAAT CATTTCATTA 601 GGGGTGTAAT AATAGAATAA GAAAAGGGGC TTGAAATTCA GCTATAAACA ACCAGGGCAT 661 AGGTAACGTG TATACTTGAT GTTATAGGTG AGATTTCAGC TTCTCAATTT CGTCTAATTA 721 ACGGAATATA TATATATATA TATTCCCACA Predicted gene structure (within gDNA segment 70426 to 75909): Exon 1 71036 71510 ( 475 n); cDNA 1 479 ( 479 n); score: 0.896 Intron 1 71511 74904 (3394 n); Pd: 0.000 (s: 0.82), Pa: 0.999 (s: 0) Exon 2 74905 74910 ( 6 n); cDNA 480 485 ( 6 n); score: 0.833 Intron 2 74911 75118 ( 208 n); Pd: 0.000 (s: 0), Pa: 0.761 (s: 0) Exon 3 75119 75150 ( 32 n); cDNA 486 517 ( 32 n); score: 0.562 MATCH C08HBa0037O11.1+ SGN-E379112- 0.896 513 0.684 C PGS_C08HBa0037O11.1+_SGN-E379112- (71036 71510,74905 74910,75119 75150) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTGCA TAATTATAAG TTTATAGCAA AAAGATATAT G-TTTT-TCT 71093 |||||||||| |||||||||| |||||||||| | ||| |||| || |||||| | |||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA A-CACAATAT ATACACTTCT GTTGTATAAA GCTAGAGAAA 71152 |||||||||| ||||||| || | |||||||| |||||||||| |||||||||| | |||||||| CGCTTTATAC AAAAACAAAA ANCACAATAT ATACACTTCT GTTGTATAAA GTTAGAGAAA 120 ATTGTATTTT ACTGCAATTG TATAATTCGC AATTGTATAA TTCGTTGGCC TTTTTCTCTG 71212 ||||||||| ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ATTGTATTTC ACTGCAATTA TATAATTCAC AATTGTATAA TTCGTTGGCC TTTTTCTCTG 180 CAATTTTTGA AGTAAAATGT TTGTAAATTG TATAATTAAG TGTATAACAC GAAGATATAC 71272 |||| ||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| CAATATTTGA AGTAAAATGT TTGTAATTTG TATAATTAAG TGTATAACAC GAAGATATAT 240 ATTTTTGCAT TTGTATATAC AATTTTCTCT CGCTTTATAC AAAACAGAAA CA-AAATTAT 71331 |||||| ||| ||||||||| |||||||||| |||||||||| |||| ||||| || || |||| ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAATAGAAA CAGAATTTAT 300 ACACTTCTGT GTATAAAGCG AGAGAGGCGA GCGAGAATGG AAAGTGGCGA GCGAGATTCC 71391 |||||||||| ||||| |||| ||| |||||| |||||||||| | |||||||| |||||||| ACACTTCTGT GTATATAGCG AGATAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTT 360 TGGGAGAGAG ACG-CTGGCA AATTTTAGAT AATGTTTGCT ATGGAGCACA ATTAAATCAA 71450 |||||| ||| ||| ||| || || ||||| | || ||||||| |||||||||| |||||||||| TGGGAGGGAG ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA 420 ACCCTAACTA TTCTATTTAA TTTAGATTAT TAGTTTACTA TTTTATACAA TTTTCCCGAT 71510 || ||| ||| || |||| | |||||||| |||||| ||| || ||||||| ||||||| | ACTCTAGCTA CTCCATTT-A GTTAGATTAC TAGTTTGCTA TTATATACAA TTTTCCCAAG 479 AATTAATTAT ATTGGGCCCG TGAATGGGCC TTCAATTATC TAGTATATAT ATATATATAT 71570 .......... .......... .......... .......... .......... .......... 479 TAAAAGGTTG ATGAATATAC TTAGCTAAAC ATGTATTGAT TATATTGACC TAATTTTTTT 71630 .......... .......... .......... .......... .......... .......... 479 TAATGTAGTT TAAAACTTGC CGGCAAAAAT CTTCATATAA CGCCAAAATC TTACTCTTCT 71690 .......... .......... .......... .......... .......... .......... 479 TTTTTAGCAC ATTATGACAT TTTATGTTCT CGAAAGATAA TTCGATTAAT ATTTAAAATT 71750 .......... .......... .......... .......... .......... .......... 479 AAATTGAATT AAATTACCTT ATCTTATTAG AATAAAAAAA TTATATTAAA AAAAACTTAA 71810 .......... .......... .......... .......... .......... .......... 479 CTATAAGCAT TGTAACTTAC ACTTTCTTTT TGAGATATGT CATTAATCGT AGTGTTGTAA 71870 .......... .......... .......... .......... .......... .......... 479 ATGTGGTTTC CTCCATGTTC ATCAATTTTT AGAAGCCGTA AAGGTAAACT AAAAAGCATA 71930 .......... .......... .......... .......... .......... .......... 479 CTCCACCATG CAATTTTATC ATTGTCACTG GCATTTTATT TATTTCAATT AAATATTTAA 71990 .......... .......... .......... .......... .......... .......... 479 TAGAGAGCTA AAATTAAAAT TGATCCTAGT AAATATCACC AAATTAGTCA TGTGGTCATT 72050 .......... .......... .......... .......... .......... .......... 479 ATAAATCAAA GGCTTGAAAC TAGAAGATAA ATATCTCATA TATTTTTTAA AAAACCATAT 72110 .......... .......... .......... .......... .......... .......... 479 ATTTGTATTT TTGAAAGGAC AAATTAATTC GATACAAGAA TCTGAACGGC AGCCACAATA 72170 .......... .......... .......... .......... .......... .......... 479 ATTCATTTAG GTAACCAATT AAATTATTAT TTTTTATTTG TATTGCAAAA AGAAGCCTTT 72230 .......... .......... .......... .......... .......... .......... 479 GAGGACTTTT CCGTCAATTC CTGGTGAGAA AATATCTAAG CAATACAATA TATTAAATTC 72290 .......... .......... .......... .......... .......... .......... 479 GAAAATTTTT TAGAGGTAAT TTTAATTGAC TTGAAGTTGA AATCAAGTAG AAAAATGTCA 72350 .......... .......... .......... .......... .......... .......... 479 TTCTTACATT GTATGTCACA TGTGTATCAT ACATCTATAC ATGAGAATAT ACACAAAATA 72410 .......... .......... .......... .......... .......... .......... 479 TACATGAAGA TATTCATAAA TATACACCTC CCTTTGAAAT CCATCCAATA TATCTCTCCA 72470 .......... .......... .......... .......... .......... .......... 479 CTCAAAATTA TTGTCGCAAA TCCAATACCA ATACACAATT AAAATTTCTT AAAGGCATGT 72530 .......... .......... .......... .......... .......... .......... 479 AAATATTAAA TTGAAAAAAA ATGTTACTGA TTTATTCAGT TTGATCGTAT GAGTATTTTT 72590 .......... .......... .......... .......... .......... .......... 479 TTTATTAATT AAAAAAATTA AACTTTAAAA TTGAAAATTA AAAAAATTAA TAATAAACAA 72650 .......... .......... .......... .......... .......... .......... 479 AAATAAATCG AATCAATTTA TATACGCCAC CCCTGAAAGA AAAAGAAAAA ATGAGTTGGC 72710 .......... .......... .......... .......... .......... .......... 479 CAAAAAGAAC CTAAATGACA CGGCATTTGT TTCAATGAAT AGAAGAATTT GTTTGTTTAG 72770 .......... .......... .......... .......... .......... .......... 479 TCGTCGTTTA CGACTATCCA AACACTTACC CAATTTTGAC TTTTCTTAGC CGTCTTTCTC 72830 .......... .......... .......... .......... .......... .......... 479 AGCATTTTTC TAGCTTGTTT CCATTTTCAT TTTTTCCTAT CGAAATTAAC TTTCTTGTGT 72890 .......... .......... .......... .......... .......... .......... 479 TGATTTGGTA TTATTTATTA ATATCTACTT TTTAATTTTA TAATTTTAAA AAGATATTTC 72950 .......... .......... .......... .......... .......... .......... 479 ATTATACGTA AAAATAAGAA ATGTTTATTA TCCGAACAAC TCTCTTGTAT ATAGAGTAGT 73010 .......... .......... .......... .......... .......... .......... 479 TGGTGATTGA AACTGACAGA GGACCTGGTG ATGACATTAA ATATAGTTAT TTTATTTTTT 73070 .......... .......... .......... .......... .......... .......... 479 TAATAGAAAT TTCTGAACGT GATTTTTGAA TAGCTTCAAT TGGTGCATGT GAGATAAATA 73130 .......... .......... .......... .......... .......... .......... 479 AACATCGAAA AGTGTGGAGC AATCGGGACT TTTGATTTTT AATAACAAAA GTGAAAGAAA 73190 .......... .......... .......... .......... .......... .......... 479 AATCAATTGA TTCTTAAAAT TGAGATTAAA TTCACTATCT TTTTGATCGA CCCCCCTCTA 73250 .......... .......... .......... .......... .......... .......... 479 CTTGCTTATA TTCACAATTA ATAGCATAAA AATATCGCCA AACATTGGCT CTAAAAGACT 73310 .......... .......... .......... .......... .......... .......... 479 TATGCATTCC ATGTCTTTCT TATGTCATGA ACTTTCAAAA ACGAAATTTA ATCGTCAAAA 73370 .......... .......... .......... .......... .......... .......... 479 TCTTAATCAC TAAGCTTAAA CCTTTTTCCT TTCTTCTATA CTTTTTTTTG TTCAACAATT 73430 .......... .......... .......... .......... .......... .......... 479 AACCATATTG CTGCTTAATT CTATTGACAT TTGACACATA ATTACAATTA TGAGTTTATT 73490 .......... .......... .......... .......... .......... .......... 479 AAACCATGAA CGTCAATTTA TGTGGATTCC ATAAGCTATT GTTGTTTGTG TTAAATGTAA 73550 .......... .......... .......... .......... .......... .......... 479 ACAATTGTTG ATAATTATTT TTGGCTTTAT TTTACAATCA TATTATTCAA TCTATGTAAT 73610 .......... .......... .......... .......... .......... .......... 479 GAAATTTTGA ACGTAAAAAG ATATATATCA CCGTAAAAAG ATGACACGAG ATTTTGTTAT 73670 .......... .......... .......... .......... .......... .......... 479 TATAGAGATA TATTATAAAT ATCTTTTTTC TTATCAATCT TATAATTTAC GTAATTCAAA 73730 .......... .......... .......... .......... .......... .......... 479 GTTACCAATA ATTTTGTATC ATCTCCGAAC TACTATATGC ACATTTACGT TTGAGTATAT 73790 .......... .......... .......... .......... .......... .......... 479 TATGTTATCA ATCATTTTAA ATTTTAAGTA GGATAAAGCC AAGAGTTTTA TCTCCTAACA 73850 .......... .......... .......... .......... .......... .......... 479 AAATTGAGTT GTGTTTTTTA ATTTGACGAA AATCTACTAA TGAACTATGT TTCTTATCTT 73910 .......... .......... .......... .......... .......... .......... 479 ATATTAGTCG TCTATATAAT TATTTTATTA ATTTATTAAA TCAATCATAA GAAAACAATT 73970 .......... .......... .......... .......... .......... .......... 479 ATTTTTCTTT TCTATTTTAC TTATATAATT AGTATTTTCT TTTTGTAAGT CTAAACAAGT 74030 .......... .......... .......... .......... .......... .......... 479 TTATAAGTTC CAAAGACTTT CTTTCTTCAA AAAAATAAAT AAAAGATACA TTAATAAAAT 74090 .......... .......... .......... .......... .......... .......... 479 GATCCATTTT ATCTACGATT AAAGCATAAC AATAATAACA TATGGAATTA CATTCCTATT 74150 .......... .......... .......... .......... .......... .......... 479 ACTATCTCAT AAAAAATGAA TTTTTCTTTT TGAAATATCT TCGACTTTAA TATAATAAAT 74210 .......... .......... .......... .......... .......... .......... 479 CAACTAGAAC ATAAGATCGA AGGGAGTGCT ATATTTTTTT TAGTTTCAAA CTTAATTTTT 74270 .......... .......... .......... .......... .......... .......... 479 TTTTAATGCA GCTAGCCCAC TATCTGCCCA CTTTATTTAT TATAATTCCA AAACATAAAA 74330 .......... .......... .......... .......... .......... .......... 479 AAAGATACTA CCATTTGGCA TTATTTTGCT CATTTATTAT TATATATTTT GGACAAAATC 74390 .......... .......... .......... .......... .......... .......... 479 TAAATACTCA ACTAACAAAT AACAAAAATC GTTAATTTCA ATATATAATA CATACAGGTA 74450 .......... .......... .......... .......... .......... .......... 479 AAAGATAGAA GGACCTCACC CCACCCCCAC CCCACCCCAC CCCTACAATC TTCTCCTTTG 74510 .......... .......... .......... .......... .......... .......... 479 ATGATTCAAT AAAAACACAA GAAAACCCCG CGCTCTTCTT CCTTTCCTTG TCCCCTAAAA 74570 .......... .......... .......... .......... .......... .......... 479 AGATCATGAA GAATCGAAAC AGAGCCAAAA TCTCAACTAA ATGGATTGCT ATTCTTTGTA 74630 .......... .......... .......... .......... .......... .......... 479 TTTTTAGCTT TGCTCTTGGT ATGCTTTTCT CTAACAGGTA AAAGGGTCAT GCAAAAAGTG 74690 .......... .......... .......... .......... .......... .......... 479 TTTTTTTTTT TGGTTATGGG GTTTGAATTT TTCATGGGGT TTCAATAAAA AAGCTCTCTT 74750 .......... .......... .......... .......... .......... .......... 479 TTTTCATCTA TTTGTTCTTC AGAGATTTGG TTCGTGGGTT TTTTTCAAGA AATAGGAAAA 74810 .......... .......... .......... .......... .......... .......... 479 AGATGTTTGT TTTTTTTGCT GAAAAGATTT GAATTTTATT GGCTATTTTT TGTGGATTTT 74870 .......... .......... .......... .......... .......... .......... 479 CATTTCTTGA TTTTTTGTTT TGTTGTATAA TTAGAGTTTG GACTCCTCCA GAATCAGATG 74930 || ||| .......... .......... .......... ....AGCTTG .......... .......... 485 GAAGGAACAT ATTTGGAAGG CGCCAGACGC AAGAAAGAGT CTTGCCTTCT GTTTCTGATG 74990 .......... .......... .......... .......... .......... .......... 485 ATTGTGAAAC CAAAAACAGT CAGGTCTAAC CCCCCACCCC CCAACAAACA AAGATAAAAC 75050 .......... .......... .......... .......... .......... .......... 485 TTTTTTTTTT TTTGTCATTG TTATAGTTAT TATTGCTGTT TTTTTAAATA TGGATGATGT 75110 .......... .......... .......... .......... .......... .......... 485 TTTATGAGCA GAAGGAGGAG ATGATGGGAG AGTTTAACAA 75150 | || |||| | | | | || || | || ........TA TAAAATGGAG AGAAGGAAAA AGATTTAGAA 517 hqPGS_C08HBa0037O11.1+_SGN-E379112- (71036 71510) ******************************************************************************** EST sequence 71 +strand 612 n (File: SGN-E394609+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 301 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 361 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 421 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 541 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 601 GGGTGTAATA AT Predicted gene structure (within gDNA segment 70436 to 74549): Exon 1 71036 71507 ( 472 n); cDNA 1 475 ( 475 n); score: 0.905 MATCH C08HBa0037O11.1+ SGN-E394609+ 0.905 472 0.771 C PGS_C08HBa0037O11.1+_SGN-E394609+ (71036 71507) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTGCA TAATTATAAG TTTATAGCAA AAAGATATAT G-TTTT-TCT 71093 |||||||||| |||||||||| |||||||||| | ||| |||| || |||||| | |||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATA TACACTTCTG TTGTATAAAG CTAGAGAAAA 71153 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TTGTATTTTA CTGCAATTGT ATAATTCGCA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 71213 |||||||| | |||||||| | ||||||| || |||||||||| |||||||||| |||||||||| TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 180 AATTTTTGAA GTAAAATGTT TGTAAATTGT ATAATTAAGT GTATAACACG AAGATATACA 71273 ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 240 TTTTTGCATT TGTATATACA ATTTTCTCTC GCTTTATACA AAACAGAAAC A-AAATTATA 71332 ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| | || ||||| TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 300 CACTTCTGTG TATAAAGCGA GAGAGGCGAG CGAGAATGGA AAGTGGCGAG CGAGATTCCT 71392 |||||||||| |||| ||||| || ||||||| |||||||||| ||||||||| ||||||| | CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 360 GGGAGAGAGA CG-CTGGCAA ATTTTAGATA ATGTTTGCTA TGGAGCACAA TTAAATCAAA 71451 ||||| |||| || ||| ||| | ||||| || | |||||||| |||||||||| |||||||||| GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 420 CCCTAACTAT TCTATTTAAT TTAGATTATT AGTTTACTAT TTTATACAAT TTTCCC 71507 | ||| ||| || |||| | |||||||| | ||||| |||| | |||||||| |||||| CTCTAGCTAC TCCATTT-AG TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCC 475 hqPGS_C08HBa0037O11.1+_SGN-E394609+ (71036 71507) ******************************************************************************** EST sequence 58 +strand 325 n (File: SGN-E393076+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAAAAAC AGAATTTATT 301 TTTTTTTGTG TATATAGCGA GATAG Predicted gene structure (within gDNA segment 70436 to 72346): Exon 1 71036 71357 ( 322 n); cDNA 1 325 ( 325 n); score: 0.902 MATCH C08HBa0037O11.1+ SGN-E393076+ 0.902 322 0.991 C PGS_C08HBa0037O11.1+_SGN-E393076+ (71036 71357) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTGCA TAATTATAAG TTTATAGCAA AAAGATATAT G-TTTT-TCT 71093 |||||||||| |||||||||| |||||||||| | ||| |||| || |||||| | |||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATA TACACTTCTG TTGTATAAAG CTAGAGAAAA 71153 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TTGTATTTTA CTGCAATTGT ATAATTCGCA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 71213 |||||||| | |||||||| | ||||||| || |||||||||| |||||||||| |||||||||| TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 180 AATTTTTGAA GTAAAATGTT TGTAAATTGT ATAATTAAGT GTATAACACG AAGATATACA 71273 ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 240 TTTTTGCATT TGTATATACA ATTTTCTCTC GCTTTATACA AAACAGAAAC A-AAATTATA 71332 ||||| ||| |||||||||| |||||||||| |||||||||| ||| | |||| | || |||| TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAAAAAC AGAATTTATT 300 CACTTCTGTG TATAAAGCGA GAGAG 71357 || |||| |||| ||||| || || TTTTTTTGTG TATATAGCGA GATAG 325 hqPGS_C08HBa0037O11.1+_SGN-E393076+ (71036 71357) ******************************************************************************** EST sequence 57 +strand 308 n (File: SGN-E393075+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAGGTTTTT 301 TTTTTTTT Predicted gene structure (within gDNA segment 70436 to 72176): Exon 1 71036 71337 ( 302 n); cDNA 1 304 ( 304 n); score: 0.907 MATCH C08HBa0037O11.1+ SGN-E393075+ 0.907 302 0.981 C PGS_C08HBa0037O11.1+_SGN-E393075+ (71036 71337) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTGCA TAATTATAAG TTTATAGCAA AAAGATATAT G-TTTT-TCT 71093 |||||||||| |||||||||| |||||||||| | ||| |||| || |||||| | |||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATA TACACTTCTG TTGTATAAAG CTAGAGAAAA 71153 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TTGTATTTTA CTGCAATTGT ATAATTCGCA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 71213 |||||||| | |||||||| | ||||||| || |||||||||| |||||||||| |||||||||| TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 180 AATTTTTGAA GTAAAATGTT TGTAAATTGT ATAATTAAGT GTATAACACG AAGATATACA 71273 ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 240 TTTTTGCATT TGTATATACA ATTTTCTCTC GCTTTATACA AAACAGAAAC AAAATTATAC 71333 ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| | | | | TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAGGTTTTT 300 ACTT 71337 || TTTT 304 hqPGS_C08HBa0037O11.1+_SGN-E393075+ (71036 71337) ******************************************************************************** EST sequence 17 +strand 570 n (File: SGN-E379618+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG TTTGCTATTA TATACAATTT TCCCAAGAGC 481 TTGTATAANA TGGAGAGAAG GAAAAAGATT TAGAATTATC GCTTGTGAAT GACAAGAAAA 541 GATTGCAAAA TAAGAATTTA GTTGTTTTGC Predicted gene structure (within gDNA segment 70437 to 74139): Exon 1 71037 71507 ( 471 n); cDNA 1 474 ( 474 n); score: 0.904 MATCH C08HBa0037O11.1+ SGN-E379618+ 0.904 471 0.826 C PGS_C08HBa0037O11.1+_SGN-E379618+ (71037 71507) Alignment (genomic DNA sequence = upper lines): AAAATGTATG TATATTGCAT AATTATAAGT TTATAGCAAA AAGATATATG -TTTT-TCTC 71094 |||||||||| |||||||||| |||||||||| ||| |||| || ||||||| |||| |||| AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATACA AAAACAGAAA CACAATATAT ACACTTCTGT TGTATAAAGC TAGAGAAAAT 71154 |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| |||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 TGTATTTTAC TGCAATTGTA TAATTCGCAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 71214 ||||||| || ||||||| || |||||| ||| |||||||||| |||||||||| |||||||||| TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 180 ATTTTTGAAG TAAAATGTTT GTAAATTGTA TAATTAAGTG TATAACACGA AGATATACAT 71274 || ||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||| || ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 240 TTTTGCATTT GTATATACAA TTTTCTCTCG CTTTATACAA AACAGAAACA -AAATTATAC 71333 |||| ||| | |||||||||| |||||||||| |||||||||| || ||||||| || |||||| TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 300 ACTTCTGTGT ATAAAGCGAG AGAGGCGAGC GAGAATGGAA AGTGGCGAGC GAGATTCCTG 71393 |||||||||| ||| |||||| | |||||||| ||||||||| |||||||||| |||||| || ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 360 GGAGAGAGAC G-CTGGCAAA TTTTAGATAA TGTTTGCTAT GGAGCACAAT TAAATCAAAC 71452 |||| ||||| | ||| |||| ||||| ||| ||||||||| |||||||||| |||||||||| GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 420 CCTAACTATT CTATTTAATT TAGATTATTA GTTTACTATT TTATACAATT TTCCC 71507 ||| ||| | | |||| | | ||||||| || |||| ||||| ||||||||| ||||| TCTAGCTACT CCATTT-AGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCC 474 hqPGS_C08HBa0037O11.1+_SGN-E379618+ (71037 71507) ******************************************************************************** EST sequence 96 +strand 450 n (File: SGN-E200845+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG Predicted gene structure (within gDNA segment 70437 to 72939): Exon 1 71037 71483 ( 447 n); cDNA 1 450 ( 450 n); score: 0.904 MATCH C08HBa0037O11.1+ SGN-E200845+ 0.904 447 0.993 C PGS_C08HBa0037O11.1+_SGN-E200845+ (71037 71483) Alignment (genomic DNA sequence = upper lines): AAAATGTATG TATATTGCAT AATTATAAGT TTATAGCAAA AAGATATATG -TTTT-TCTC 71094 |||||||||| |||||||||| |||||||||| ||| |||| || ||||||| |||| |||| AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATACA AAAACAGAAA CACAATATAT ACACTTCTGT TGTATAAAGC TAGAGAAAAT 71154 |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| |||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 TGTATTTTAC TGCAATTGTA TAATTCGCAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 71214 ||||||| || ||||||| || |||||| ||| |||||||||| |||||||||| |||||||||| TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 180 ATTTTTGAAG TAAAATGTTT GTAAATTGTA TAATTAAGTG TATAACACGA AGATATACAT 71274 || ||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||| || ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 240 TTTTGCATTT GTATATACAA TTTTCTCTCG CTTTATACAA AACAGAAACA -AAATTATAC 71333 |||| ||| | |||||||||| |||||||||| |||||||||| || ||||||| || |||||| TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 300 ACTTCTGTGT ATAAAGCGAG AGAGGCGAGC GAGAATGGAA AGTGGCGAGC GAGATTCCTG 71393 |||||||||| ||| |||||| | |||||||| ||||||||| |||||||||| |||||| || ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 360 GGAGAGAGAC G-CTGGCAAA TTTTAGATAA TGTTTGCTAT GGAGCACAAT TAAATCAAAC 71452 |||| ||||| | ||| |||| ||||| ||| ||||||||| |||||||||| |||||||||| GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 420 CCTAACTATT CTATTTAATT TAGATTATTA G 71483 ||| ||| | | |||| | | ||||||| || | TCTAGCTACT CCATTT-AGT TAGATTACTA G 450 hqPGS_C08HBa0037O11.1+_SGN-E200845+ (71037 71483) ******************************************************************************** EST sequence 119 -strand 651 n (File: SGN-E394141-) 1 CAATTATATA ATTCACAATT GTATAATTCG TTGGCCTTTT TCTTTGCAAT ATTTGAAGTA 61 AAATGTTTGT AATTTGTATA ATTAAGTGTA TAACACGAAG ATATATATTT TTACATGTGT 121 ATATACAATT TTCTCTCGCT TTATACAAAA TAGAAACAGA ATTTATACAC TTCTGTGTAT 181 ATAGCGAGAT AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC 241 CTGACAAACT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC 301 ATTTAGTTAG ATTACTAGTT TGCTATTATA TACAATTTTC CCAAGAGCTT GTATAAAATG 361 GAGAGAAGGA AAAAGATTTA GAATTATCGC TTGTGAATGA CAAGAAAAGA TTGCAAAATA 421 AGAATTTAGT TGTTTTGCTT TAATAAGTTC CTTAATCATT TCATTAGGGG TGTAATAATA 481 GAATAAGAAA AGGGGCTTGA AATTCAGCTA TAAACAACCA GGGCATAGGT AACGTGTATA 541 CTTGATGTTA TAGGTGAAAT TTCAGCTTCT CAATTTCGAT TAATTAACAT TAAAAAGATA 601 TATATATATT CCCCCAGTAT CACATTGATA GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 70422 to 76859): Exon 1 71167 71510 ( 344 n); cDNA 1 345 ( 345 n); score: 0.895 Intron 1 71511 74904 (3394 n); Pd: 0.000 (s: 0.82), Pa: 0.999 (s: 0) Exon 2 74905 74910 ( 6 n); cDNA 346 351 ( 6 n); score: 0.833 Intron 2 74911 75118 ( 208 n); Pd: 0.000 (s: 0), Pa: 0.761 (s: 0) Exon 3 75119 75150 ( 32 n); cDNA 352 383 ( 32 n); score: 0.562 PPA cDNA 632 651 MATCH C08HBa0037O11.1+ SGN-E394141- 0.895 382 0.587 C PGS_C08HBa0037O11.1+_SGN-E394141- (71167 71510,74905 74910,75119 75150) Alignment (genomic DNA sequence = upper lines): CAATTGTATA ATTCGCAATT GTATAATTCG TTGGCCTTTT TCTCTGCAAT TTTTGAAGTA 71226 ||||| |||| |||| ||||| |||||||||| |||||||||| ||| |||||| ||||||||| CAATTATATA ATTCACAATT GTATAATTCG TTGGCCTTTT TCTTTGCAAT ATTTGAAGTA 60 AAATGTTTGT AAATTGTATA ATTAAGTGTA TAACACGAAG ATATACATTT TTGCATTTGT 71286 |||||||||| || ||||||| |||||||||| |||||||||| ||||| |||| || ||| ||| AAATGTTTGT AATTTGTATA ATTAAGTGTA TAACACGAAG ATATATATTT TTACATGTGT 120 ATATACAATT TTCTCTCGCT TTATACAAAA CAGAAACA-A AATTATACAC TTCTGTGTAT 71345 |||||||||| |||||||||| |||||||||| ||||||| | | |||||||| |||||||||| ATATACAATT TTCTCTCGCT TTATACAAAA TAGAAACAGA ATTTATACAC TTCTGTGTAT 180 AAAGCGAGAG AGGCGAGCGA GAATGGAAAG TGGCGAGCGA GATTCCTGGG AGAGAGACG- 71404 | ||||||| |||||||||| ||||||| || |||||||||| |||| |||| || |||||| ATAGCGAGAT AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC 240 CTGGCAAATT TTAGATAATG TTTGCTATGG AGCACAATTA AATCAAACCC TAACTATTCT 71464 ||| |||| | |||| ||| | |||||||||| |||||||||| |||||||| | || ||| || CTGACAAACT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC 300 ATTTAATTTA GATTATTAGT TTACTATTTT ATACAATTTT CCCGATAATT AATTATATTG 71524 |||| | ||| ||||| |||| || ||||| | |||||||||| ||| | ATTT-AGTTA GATTACTAGT TTGCTATTAT ATACAATTTT CCCAAG.... .......... 345 GGCCCGTGAA TGGGCCTTCA ATTATCTAGT ATATATATAT ATATATTAAA AGGTTGATGA 71584 .......... .......... .......... .......... .......... .......... 345 ATATACTTAG CTAAACATGT ATTGATTATA TTGACCTAAT TTTTTTTAAT GTAGTTTAAA 71644 .......... .......... .......... .......... .......... .......... 345 ACTTGCCGGC AAAAATCTTC ATATAACGCC AAAATCTTAC TCTTCTTTTT TAGCACATTA 71704 .......... .......... .......... .......... .......... .......... 345 TGACATTTTA TGTTCTCGAA AGATAATTCG ATTAATATTT AAAATTAAAT TGAATTAAAT 71764 .......... .......... .......... .......... .......... .......... 345 TACCTTATCT TATTAGAATA AAAAAATTAT ATTAAAAAAA ACTTAACTAT AAGCATTGTA 71824 .......... .......... .......... .......... .......... .......... 345 ACTTACACTT TCTTTTTGAG ATATGTCATT AATCGTAGTG TTGTAAATGT GGTTTCCTCC 71884 .......... .......... .......... .......... .......... .......... 345 ATGTTCATCA ATTTTTAGAA GCCGTAAAGG TAAACTAAAA AGCATACTCC ACCATGCAAT 71944 .......... .......... .......... .......... .......... .......... 345 TTTATCATTG TCACTGGCAT TTTATTTATT TCAATTAAAT ATTTAATAGA GAGCTAAAAT 72004 .......... .......... .......... .......... .......... .......... 345 TAAAATTGAT CCTAGTAAAT ATCACCAAAT TAGTCATGTG GTCATTATAA ATCAAAGGCT 72064 .......... .......... .......... .......... .......... .......... 345 TGAAACTAGA AGATAAATAT CTCATATATT TTTTAAAAAA CCATATATTT GTATTTTTGA 72124 .......... .......... .......... .......... .......... .......... 345 AAGGACAAAT TAATTCGATA CAAGAATCTG AACGGCAGCC ACAATAATTC ATTTAGGTAA 72184 .......... .......... .......... .......... .......... .......... 345 CCAATTAAAT TATTATTTTT TATTTGTATT GCAAAAAGAA GCCTTTGAGG ACTTTTCCGT 72244 .......... .......... .......... .......... .......... .......... 345 CAATTCCTGG TGAGAAAATA TCTAAGCAAT ACAATATATT AAATTCGAAA ATTTTTTAGA 72304 .......... .......... .......... .......... .......... .......... 345 GGTAATTTTA ATTGACTTGA AGTTGAAATC AAGTAGAAAA ATGTCATTCT TACATTGTAT 72364 .......... .......... .......... .......... .......... .......... 345 GTCACATGTG TATCATACAT CTATACATGA GAATATACAC AAAATATACA TGAAGATATT 72424 .......... .......... .......... .......... .......... .......... 345 CATAAATATA CACCTCCCTT TGAAATCCAT CCAATATATC TCTCCACTCA AAATTATTGT 72484 .......... .......... .......... .......... .......... .......... 345 CGCAAATCCA ATACCAATAC ACAATTAAAA TTTCTTAAAG GCATGTAAAT ATTAAATTGA 72544 .......... .......... .......... .......... .......... .......... 345 AAAAAAATGT TACTGATTTA TTCAGTTTGA TCGTATGAGT ATTTTTTTTA TTAATTAAAA 72604 .......... .......... .......... .......... .......... .......... 345 AAATTAAACT TTAAAATTGA AAATTAAAAA AATTAATAAT AAACAAAAAT AAATCGAATC 72664 .......... .......... .......... .......... .......... .......... 345 AATTTATATA CGCCACCCCT GAAAGAAAAA GAAAAAATGA GTTGGCCAAA AAGAACCTAA 72724 .......... .......... .......... .......... .......... .......... 345 ATGACACGGC ATTTGTTTCA ATGAATAGAA GAATTTGTTT GTTTAGTCGT CGTTTACGAC 72784 .......... .......... .......... .......... .......... .......... 345 TATCCAAACA CTTACCCAAT TTTGACTTTT CTTAGCCGTC TTTCTCAGCA TTTTTCTAGC 72844 .......... .......... .......... .......... .......... .......... 345 TTGTTTCCAT TTTCATTTTT TCCTATCGAA ATTAACTTTC TTGTGTTGAT TTGGTATTAT 72904 .......... .......... .......... .......... .......... .......... 345 TTATTAATAT CTACTTTTTA ATTTTATAAT TTTAAAAAGA TATTTCATTA TACGTAAAAA 72964 .......... .......... .......... .......... .......... .......... 345 TAAGAAATGT TTATTATCCG AACAACTCTC TTGTATATAG AGTAGTTGGT GATTGAAACT 73024 .......... .......... .......... .......... .......... .......... 345 GACAGAGGAC CTGGTGATGA CATTAAATAT AGTTATTTTA TTTTTTTAAT AGAAATTTCT 73084 .......... .......... .......... .......... .......... .......... 345 GAACGTGATT TTTGAATAGC TTCAATTGGT GCATGTGAGA TAAATAAACA TCGAAAAGTG 73144 .......... .......... .......... .......... .......... .......... 345 TGGAGCAATC GGGACTTTTG ATTTTTAATA ACAAAAGTGA AAGAAAAATC AATTGATTCT 73204 .......... .......... .......... .......... .......... .......... 345 TAAAATTGAG ATTAAATTCA CTATCTTTTT GATCGACCCC CCTCTACTTG CTTATATTCA 73264 .......... .......... .......... .......... .......... .......... 345 CAATTAATAG CATAAAAATA TCGCCAAACA TTGGCTCTAA AAGACTTATG CATTCCATGT 73324 .......... .......... .......... .......... .......... .......... 345 CTTTCTTATG TCATGAACTT TCAAAAACGA AATTTAATCG TCAAAATCTT AATCACTAAG 73384 .......... .......... .......... .......... .......... .......... 345 CTTAAACCTT TTTCCTTTCT TCTATACTTT TTTTTGTTCA ACAATTAACC ATATTGCTGC 73444 .......... .......... .......... .......... .......... .......... 345 TTAATTCTAT TGACATTTGA CACATAATTA CAATTATGAG TTTATTAAAC CATGAACGTC 73504 .......... .......... .......... .......... .......... .......... 345 AATTTATGTG GATTCCATAA GCTATTGTTG TTTGTGTTAA ATGTAAACAA TTGTTGATAA 73564 .......... .......... .......... .......... .......... .......... 345 TTATTTTTGG CTTTATTTTA CAATCATATT ATTCAATCTA TGTAATGAAA TTTTGAACGT 73624 .......... .......... .......... .......... .......... .......... 345 AAAAAGATAT ATATCACCGT AAAAAGATGA CACGAGATTT TGTTATTATA GAGATATATT 73684 .......... .......... .......... .......... .......... .......... 345 ATAAATATCT TTTTTCTTAT CAATCTTATA ATTTACGTAA TTCAAAGTTA CCAATAATTT 73744 .......... .......... .......... .......... .......... .......... 345 TGTATCATCT CCGAACTACT ATATGCACAT TTACGTTTGA GTATATTATG TTATCAATCA 73804 .......... .......... .......... .......... .......... .......... 345 TTTTAAATTT TAAGTAGGAT AAAGCCAAGA GTTTTATCTC CTAACAAAAT TGAGTTGTGT 73864 .......... .......... .......... .......... .......... .......... 345 TTTTTAATTT GACGAAAATC TACTAATGAA CTATGTTTCT TATCTTATAT TAGTCGTCTA 73924 .......... .......... .......... .......... .......... .......... 345 TATAATTATT TTATTAATTT ATTAAATCAA TCATAAGAAA ACAATTATTT TTCTTTTCTA 73984 .......... .......... .......... .......... .......... .......... 345 TTTTACTTAT ATAATTAGTA TTTTCTTTTT GTAAGTCTAA ACAAGTTTAT AAGTTCCAAA 74044 .......... .......... .......... .......... .......... .......... 345 GACTTTCTTT CTTCAAAAAA ATAAATAAAA GATACATTAA TAAAATGATC CATTTTATCT 74104 .......... .......... .......... .......... .......... .......... 345 ACGATTAAAG CATAACAATA ATAACATATG GAATTACATT CCTATTACTA TCTCATAAAA 74164 .......... .......... .......... .......... .......... .......... 345 AATGAATTTT TCTTTTTGAA ATATCTTCGA CTTTAATATA ATAAATCAAC TAGAACATAA 74224 .......... .......... .......... .......... .......... .......... 345 GATCGAAGGG AGTGCTATAT TTTTTTTAGT TTCAAACTTA ATTTTTTTTT AATGCAGCTA 74284 .......... .......... .......... .......... .......... .......... 345 GCCCACTATC TGCCCACTTT ATTTATTATA ATTCCAAAAC ATAAAAAAAG ATACTACCAT 74344 .......... .......... .......... .......... .......... .......... 345 TTGGCATTAT TTTGCTCATT TATTATTATA TATTTTGGAC AAAATCTAAA TACTCAACTA 74404 .......... .......... .......... .......... .......... .......... 345 ACAAATAACA AAAATCGTTA ATTTCAATAT ATAATACATA CAGGTAAAAG ATAGAAGGAC 74464 .......... .......... .......... .......... .......... .......... 345 CTCACCCCAC CCCCACCCCA CCCCACCCCT ACAATCTTCT CCTTTGATGA TTCAATAAAA 74524 .......... .......... .......... .......... .......... .......... 345 ACACAAGAAA ACCCCGCGCT CTTCTTCCTT TCCTTGTCCC CTAAAAAGAT CATGAAGAAT 74584 .......... .......... .......... .......... .......... .......... 345 CGAAACAGAG CCAAAATCTC AACTAAATGG ATTGCTATTC TTTGTATTTT TAGCTTTGCT 74644 .......... .......... .......... .......... .......... .......... 345 CTTGGTATGC TTTTCTCTAA CAGGTAAAAG GGTCATGCAA AAAGTGTTTT TTTTTTTGGT 74704 .......... .......... .......... .......... .......... .......... 345 TATGGGGTTT GAATTTTTCA TGGGGTTTCA ATAAAAAAGC TCTCTTTTTT CATCTATTTG 74764 .......... .......... .......... .......... .......... .......... 345 TTCTTCAGAG ATTTGGTTCG TGGGTTTTTT TCAAGAAATA GGAAAAAGAT GTTTGTTTTT 74824 .......... .......... .......... .......... .......... .......... 345 TTTGCTGAAA AGATTTGAAT TTTATTGGCT ATTTTTTGTG GATTTTCATT TCTTGATTTT 74884 .......... .......... .......... .......... .......... .......... 345 TTGTTTTGTT GTATAATTAG AGTTTGGACT CCTCCAGAAT CAGATGGAAG GAACATATTT 74944 || ||| .......... .......... AGCTTG.... .......... .......... .......... 351 GGAAGGCGCC AGACGCAAGA AAGAGTCTTG CCTTCTGTTT CTGATGATTG TGAAACCAAA 75004 .......... .......... .......... .......... .......... .......... 351 AACAGTCAGG TCTAACCCCC CACCCCCCAA CAAACAAAGA TAAAACTTTT TTTTTTTTTG 75064 .......... .......... .......... .......... .......... .......... 351 TCATTGTTAT AGTTATTATT GCTGTTTTTT TAAATATGGA TGATGTTTTA TGAGCAGAAG 75124 | || .......... .......... .......... .......... .......... ....TATAAA 357 GAGGAGATGA TGGGAGAGTT TAACAA 75150 ||||| | | | || | | | || ATGGAGAGAA GGAAAAAGAT TTAGAA 383 hqPGS_C08HBa0037O11.1+_SGN-E394141- (71167 71510) ******************************************************************************** EST sequence 112 -strand 605 n (File: SGN-E392605-) 1 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 61 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 121 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 181 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 241 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 301 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 361 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 421 GGGTGTAATA ATAGAATAAG AAAAGGGGCT TGAAATTCAG CTATAAACAA CCAGGGCATA 481 GGTAACGTGT ATACTTGATG TTATAGGTGA AATTTCAGCT TCTCAATTTC GATTAATTAA 541 CATTATAGAT ATATATATAT ATTCCCACAG TATCACATTT GATAGGAAAA AAAAAAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 70568 to 76269): Exon 1 71214 71510 ( 297 n); cDNA 1 298 ( 298 n); score: 0.889 Intron 1 71511 74904 (3394 n); Pd: 0.000 (s: 0.82), Pa: 0.999 (s: 0) Exon 2 74905 74910 ( 6 n); cDNA 299 304 ( 6 n); score: 0.833 Intron 2 74911 75118 ( 208 n); Pd: 0.000 (s: 0), Pa: 0.761 (s: 0) Exon 3 75119 75150 ( 32 n); cDNA 305 336 ( 32 n); score: 0.562 PPA cDNA 587 605 MATCH C08HBa0037O11.1+ SGN-E392605- 0.889 335 0.554 C PGS_C08HBa0037O11.1+_SGN-E392605- (71214 71510,74905 74910,75119 75150) Alignment (genomic DNA sequence = upper lines): AATTTTTGAA GTAAAATGTT TGTAAATTGT ATAATTAAGT GTATAACACG AAGATATACA 71273 ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 60 TTTTTGCATT TGTATATACA ATTTTCTCTC GCTTTATACA AAACAGAAAC A-AAATTATA 71332 ||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| | || ||||| TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 120 CACTTCTGTG TATAAAGCGA GAGAGGCGAG CGAGAATGGA AAGTGGCGAG CGAGATTCCT 71392 |||||||||| |||| ||||| || ||||||| |||||||||| ||||||||| ||||||| | CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 180 GGGAGAGAGA CG-CTGGCAA ATTTTAGATA ATGTTTGCTA TGGAGCACAA TTAAATCAAA 71451 ||||| |||| || ||| ||| | ||||| || | |||||||| |||||||||| |||||||||| GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 240 CCCTAACTAT TCTATTTAAT TTAGATTATT AGTTTACTAT TTTATACAAT TTTCCCGATA 71511 | ||| ||| || |||| | |||||||| | ||||| |||| | |||||||| |||||| | CTCTAGCTAC TCCATTT-AG TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCCAAG. 298 ATTAATTATA TTGGGCCCGT GAATGGGCCT TCAATTATCT AGTATATATA TATATATATT 71571 .......... .......... .......... .......... .......... .......... 298 AAAAGGTTGA TGAATATACT TAGCTAAACA TGTATTGATT ATATTGACCT AATTTTTTTT 71631 .......... .......... .......... .......... .......... .......... 298 AATGTAGTTT AAAACTTGCC GGCAAAAATC TTCATATAAC GCCAAAATCT TACTCTTCTT 71691 .......... .......... .......... .......... .......... .......... 298 TTTTAGCACA TTATGACATT TTATGTTCTC GAAAGATAAT TCGATTAATA TTTAAAATTA 71751 .......... .......... .......... .......... .......... .......... 298 AATTGAATTA AATTACCTTA TCTTATTAGA ATAAAAAAAT TATATTAAAA AAAACTTAAC 71811 .......... .......... .......... .......... .......... .......... 298 TATAAGCATT GTAACTTACA CTTTCTTTTT GAGATATGTC ATTAATCGTA GTGTTGTAAA 71871 .......... .......... .......... .......... .......... .......... 298 TGTGGTTTCC TCCATGTTCA TCAATTTTTA GAAGCCGTAA AGGTAAACTA AAAAGCATAC 71931 .......... .......... .......... .......... .......... .......... 298 TCCACCATGC AATTTTATCA TTGTCACTGG CATTTTATTT ATTTCAATTA AATATTTAAT 71991 .......... .......... .......... .......... .......... .......... 298 AGAGAGCTAA AATTAAAATT GATCCTAGTA AATATCACCA AATTAGTCAT GTGGTCATTA 72051 .......... .......... .......... .......... .......... .......... 298 TAAATCAAAG GCTTGAAACT AGAAGATAAA TATCTCATAT ATTTTTTAAA AAACCATATA 72111 .......... .......... .......... .......... .......... .......... 298 TTTGTATTTT TGAAAGGACA AATTAATTCG ATACAAGAAT CTGAACGGCA GCCACAATAA 72171 .......... .......... .......... .......... .......... .......... 298 TTCATTTAGG TAACCAATTA AATTATTATT TTTTATTTGT ATTGCAAAAA GAAGCCTTTG 72231 .......... .......... .......... .......... .......... .......... 298 AGGACTTTTC CGTCAATTCC TGGTGAGAAA ATATCTAAGC AATACAATAT ATTAAATTCG 72291 .......... .......... .......... .......... .......... .......... 298 AAAATTTTTT AGAGGTAATT TTAATTGACT TGAAGTTGAA ATCAAGTAGA AAAATGTCAT 72351 .......... .......... .......... .......... .......... .......... 298 TCTTACATTG TATGTCACAT GTGTATCATA CATCTATACA TGAGAATATA CACAAAATAT 72411 .......... .......... .......... .......... .......... .......... 298 ACATGAAGAT ATTCATAAAT ATACACCTCC CTTTGAAATC CATCCAATAT ATCTCTCCAC 72471 .......... .......... .......... .......... .......... .......... 298 TCAAAATTAT TGTCGCAAAT CCAATACCAA TACACAATTA AAATTTCTTA AAGGCATGTA 72531 .......... .......... .......... .......... .......... .......... 298 AATATTAAAT TGAAAAAAAA TGTTACTGAT TTATTCAGTT TGATCGTATG AGTATTTTTT 72591 .......... .......... .......... .......... .......... .......... 298 TTATTAATTA AAAAAATTAA ACTTTAAAAT TGAAAATTAA AAAAATTAAT AATAAACAAA 72651 .......... .......... .......... .......... .......... .......... 298 AATAAATCGA ATCAATTTAT ATACGCCACC CCTGAAAGAA AAAGAAAAAA TGAGTTGGCC 72711 .......... .......... .......... .......... .......... .......... 298 AAAAAGAACC TAAATGACAC GGCATTTGTT TCAATGAATA GAAGAATTTG TTTGTTTAGT 72771 .......... .......... .......... .......... .......... .......... 298 CGTCGTTTAC GACTATCCAA ACACTTACCC AATTTTGACT TTTCTTAGCC GTCTTTCTCA 72831 .......... .......... .......... .......... .......... .......... 298 GCATTTTTCT AGCTTGTTTC CATTTTCATT TTTTCCTATC GAAATTAACT TTCTTGTGTT 72891 .......... .......... .......... .......... .......... .......... 298 GATTTGGTAT TATTTATTAA TATCTACTTT TTAATTTTAT AATTTTAAAA AGATATTTCA 72951 .......... .......... .......... .......... .......... .......... 298 TTATACGTAA AAATAAGAAA TGTTTATTAT CCGAACAACT CTCTTGTATA TAGAGTAGTT 73011 .......... .......... .......... .......... .......... .......... 298 GGTGATTGAA ACTGACAGAG GACCTGGTGA TGACATTAAA TATAGTTATT TTATTTTTTT 73071 .......... .......... .......... .......... .......... .......... 298 AATAGAAATT TCTGAACGTG ATTTTTGAAT AGCTTCAATT GGTGCATGTG AGATAAATAA 73131 .......... .......... .......... .......... .......... .......... 298 ACATCGAAAA GTGTGGAGCA ATCGGGACTT TTGATTTTTA ATAACAAAAG TGAAAGAAAA 73191 .......... .......... .......... .......... .......... .......... 298 ATCAATTGAT TCTTAAAATT GAGATTAAAT TCACTATCTT TTTGATCGAC CCCCCTCTAC 73251 .......... .......... .......... .......... .......... .......... 298 TTGCTTATAT TCACAATTAA TAGCATAAAA ATATCGCCAA ACATTGGCTC TAAAAGACTT 73311 .......... .......... .......... .......... .......... .......... 298 ATGCATTCCA TGTCTTTCTT ATGTCATGAA CTTTCAAAAA CGAAATTTAA TCGTCAAAAT 73371 .......... .......... .......... .......... .......... .......... 298 CTTAATCACT AAGCTTAAAC CTTTTTCCTT TCTTCTATAC TTTTTTTTGT TCAACAATTA 73431 .......... .......... .......... .......... .......... .......... 298 ACCATATTGC TGCTTAATTC TATTGACATT TGACACATAA TTACAATTAT GAGTTTATTA 73491 .......... .......... .......... .......... .......... .......... 298 AACCATGAAC GTCAATTTAT GTGGATTCCA TAAGCTATTG TTGTTTGTGT TAAATGTAAA 73551 .......... .......... .......... .......... .......... .......... 298 CAATTGTTGA TAATTATTTT TGGCTTTATT TTACAATCAT ATTATTCAAT CTATGTAATG 73611 .......... .......... .......... .......... .......... .......... 298 AAATTTTGAA CGTAAAAAGA TATATATCAC CGTAAAAAGA TGACACGAGA TTTTGTTATT 73671 .......... .......... .......... .......... .......... .......... 298 ATAGAGATAT ATTATAAATA TCTTTTTTCT TATCAATCTT ATAATTTACG TAATTCAAAG 73731 .......... .......... .......... .......... .......... .......... 298 TTACCAATAA TTTTGTATCA TCTCCGAACT ACTATATGCA CATTTACGTT TGAGTATATT 73791 .......... .......... .......... .......... .......... .......... 298 ATGTTATCAA TCATTTTAAA TTTTAAGTAG GATAAAGCCA AGAGTTTTAT CTCCTAACAA 73851 .......... .......... .......... .......... .......... .......... 298 AATTGAGTTG TGTTTTTTAA TTTGACGAAA ATCTACTAAT GAACTATGTT TCTTATCTTA 73911 .......... .......... .......... .......... .......... .......... 298 TATTAGTCGT CTATATAATT ATTTTATTAA TTTATTAAAT CAATCATAAG AAAACAATTA 73971 .......... .......... .......... .......... .......... .......... 298 TTTTTCTTTT CTATTTTACT TATATAATTA GTATTTTCTT TTTGTAAGTC TAAACAAGTT 74031 .......... .......... .......... .......... .......... .......... 298 TATAAGTTCC AAAGACTTTC TTTCTTCAAA AAAATAAATA AAAGATACAT TAATAAAATG 74091 .......... .......... .......... .......... .......... .......... 298 ATCCATTTTA TCTACGATTA AAGCATAACA ATAATAACAT ATGGAATTAC ATTCCTATTA 74151 .......... .......... .......... .......... .......... .......... 298 CTATCTCATA AAAAATGAAT TTTTCTTTTT GAAATATCTT CGACTTTAAT ATAATAAATC 74211 .......... .......... .......... .......... .......... .......... 298 AACTAGAACA TAAGATCGAA GGGAGTGCTA TATTTTTTTT AGTTTCAAAC TTAATTTTTT 74271 .......... .......... .......... .......... .......... .......... 298 TTTAATGCAG CTAGCCCACT ATCTGCCCAC TTTATTTATT ATAATTCCAA AACATAAAAA 74331 .......... .......... .......... .......... .......... .......... 298 AAGATACTAC CATTTGGCAT TATTTTGCTC ATTTATTATT ATATATTTTG GACAAAATCT 74391 .......... .......... .......... .......... .......... .......... 298 AAATACTCAA CTAACAAATA ACAAAAATCG TTAATTTCAA TATATAATAC ATACAGGTAA 74451 .......... .......... .......... .......... .......... .......... 298 AAGATAGAAG GACCTCACCC CACCCCCACC CCACCCCACC CCTACAATCT TCTCCTTTGA 74511 .......... .......... .......... .......... .......... .......... 298 TGATTCAATA AAAACACAAG AAAACCCCGC GCTCTTCTTC CTTTCCTTGT CCCCTAAAAA 74571 .......... .......... .......... .......... .......... .......... 298 GATCATGAAG AATCGAAACA GAGCCAAAAT CTCAACTAAA TGGATTGCTA TTCTTTGTAT 74631 .......... .......... .......... .......... .......... .......... 298 TTTTAGCTTT GCTCTTGGTA TGCTTTTCTC TAACAGGTAA AAGGGTCATG CAAAAAGTGT 74691 .......... .......... .......... .......... .......... .......... 298 TTTTTTTTTT GGTTATGGGG TTTGAATTTT TCATGGGGTT TCAATAAAAA AGCTCTCTTT 74751 .......... .......... .......... .......... .......... .......... 298 TTTCATCTAT TTGTTCTTCA GAGATTTGGT TCGTGGGTTT TTTTCAAGAA ATAGGAAAAA 74811 .......... .......... .......... .......... .......... .......... 298 GATGTTTGTT TTTTTTGCTG AAAAGATTTG AATTTTATTG GCTATTTTTT GTGGATTTTC 74871 .......... .......... .......... .......... .......... .......... 298 ATTTCTTGAT TTTTTGTTTT GTTGTATAAT TAGAGTTTGG ACTCCTCCAG AATCAGATGG 74931 || ||| .......... .......... .......... ...AGCTTG. .......... .......... 304 AAGGAACATA TTTGGAAGGC GCCAGACGCA AGAAAGAGTC TTGCCTTCTG TTTCTGATGA 74991 .......... .......... .......... .......... .......... .......... 304 TTGTGAAACC AAAAACAGTC AGGTCTAACC CCCCACCCCC CAACAAACAA AGATAAAACT 75051 .......... .......... .......... .......... .......... .......... 304 TTTTTTTTTT TTGTCATTGT TATAGTTATT ATTGCTGTTT TTTTAAATAT GGATGATGTT 75111 .......... .......... .......... .......... .......... .......... 304 TTATGAGCAG AAGGAGGAGA TGATGGGAGA GTTTAACAA 75150 | || ||||| | | | | | || | || .......TAT AAAATGGAGA GAAGGAAAAA GATTTAGAA 336 hqPGS_C08HBa0037O11.1+_SGN-E392605- (71214 71510) ******************************************************************************** EST sequence 11 +strand 663 n (File: SGN-E551354+) 1 GAAGAATCCA AACAGAGCCC AAATCTCAAC TAAATGGATT GCTATTCTTT GTATTTTTAG 61 CTTTGCTCTT GGTATGCTTT TCTCTAACAG AGTTTGGACT CCTCCAGAAT CAGATGGAAG 121 GAACATATTT GGAAGGCGCC AGACGCAAGA AAGAGTCTTG CCTTCTGTTT CTGATGATTG 181 TGAAACCAAA AACAGTCAGA AGGAGGAGAT GATGGGAGAG TTTAACAAAG CACAAGTAGC 241 TATCCCGTGA GTTTCAGAGT TTTTCATATC GTTGGATGAT TCAATTGCTA AGATTCAAAG 301 TGAGCTGCCT TCAACAAGGA TCCTCTAATT CCACGGATAA CTGAAGAGGT TCCTTCCTTG 361 AGGACAGATT CTGGAGGAAG TGGAACGAGA AAGAAGACAT TTATGGTTAT TGGGATAAAC 421 ACGGCCTTCA GTAGTAGAAA AAGGCGCGAT TCTATTAGAG AGACTTGGAT GCCTCAAGGT 481 ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 541 AGCGCGATAT CGAATAGCAT TTTAGATCGA GCCATTGATA GTGAAGATGC TCAGCATAAT 601 GACATTCTTC GACTTGATCA CCTAAAANGC TATCATGAGT TAACTGCAAA AACGAAAGCT 661 TTC Predicted gene structure (within gDNA segment 73798 to 78314): Exon 1 74578 74667 ( 90 n); cDNA 1 90 ( 90 n); score: 0.978 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 74905 75013 ( 109 n); cDNA 91 199 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 0.98) Exon 3 75122 75189 ( 68 n); cDNA 200 267 ( 68 n); score: 0.985 Intron 3 75190 75409 ( 220 n); Pd: 0.567 (s: 0.98), Pa: 0.925 (s: 0.98) Exon 4 75410 75621 ( 212 n); cDNA 268 478 ( 211 n); score: 0.995 Intron 4 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 75707 75770 ( 64 n); cDNA 479 542 ( 64 n); score: 1.000 Intron 5 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 6 77504 77576 ( 73 n); cDNA 543 615 ( 73 n); score: 1.000 Intron 6 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0.94) Exon 7 77657 77704 ( 48 n); cDNA 616 663 ( 48 n); score: 0.938 MATCH C08HBa0037O11.1+ SGN-E551354+ 0.994 664 1.002 C PGS_C08HBa0037O11.1+_SGN-E551354+ (74578 74667,74905 75013,75122 75189,75410 75621,75707 75770,77504 77576,77657 77704) Alignment (genomic DNA sequence = upper lines): GAAGAATCGA AACAGAGCCA AAATCTCAAC TAAATGGATT GCTATTCTTT GTATTTTTAG 74637 |||||||| | ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAATCCA AACAGAGCCC AAATCTCAAC TAAATGGATT GCTATTCTTT GTATTTTTAG 60 CTTTGCTCTT GGTATGCTTT TCTCTAACAG GTAAAAGGGT CATGCAAAAA GTGTTTTTTT 74697 |||||||||| |||||||||| |||||||||| CTTTGCTCTT GGTATGCTTT TCTCTAACAG .......... .......... .......... 90 TTTTGGTTAT GGGGTTTGAA TTTTTCATGG GGTTTCAATA AAAAAGCTCT CTTTTTTCAT 74757 .......... .......... .......... .......... .......... .......... 90 CTATTTGTTC TTCAGAGATT TGGTTCGTGG GTTTTTTTCA AGAAATAGGA AAAAGATGTT 74817 .......... .......... .......... .......... .......... .......... 90 TGTTTTTTTT GCTGAAAAGA TTTGAATTTT ATTGGCTATT TTTTGTGGAT TTTCATTTCT 74877 .......... .......... .......... .......... .......... .......... 90 TGATTTTTTG TTTTGTTGTA TAATTAGAGT TTGGACTCCT CCAGAATCAG ATGGAAGGAA 74937 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGT TTGGACTCCT CCAGAATCAG ATGGAAGGAA 123 CATATTTGGA AGGCGCCAGA CGCAAGAAAG AGTCTTGCCT TCTGTTTCTG ATGATTGTGA 74997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATTTGGA AGGCGCCAGA CGCAAGAAAG AGTCTTGCCT TCTGTTTCTG ATGATTGTGA 183 AACCAAAAAC AGTCAGGTCT AACCCCCCAC CCCCCAACAA ACAAAGATAA AACTTTTTTT 75057 |||||||||| |||||| AACCAAAAAC AGTCAG.... .......... .......... .......... .......... 199 TTTTTTGTCA TTGTTATAGT TATTATTGCT GTTTTTTTAA ATATGGATGA TGTTTTATGA 75117 .......... .......... .......... .......... .......... .......... 199 GCAGAAGGAG GAGATGATGG GAGAGTTTAA CAAAGCACAA GTAGCTATCC AGTGAGTTTC 75177 |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ....AAGGAG GAGATGATGG GAGAGTTTAA CAAAGCACAA GTAGCTATCC CGTGAGTTTC 255 AGAGTTTTTC ATGTGATTAC CTTAGACTTT ATCTTTTTTG TACTTAACAT GACAACATAT 75237 |||||||||| || AGAGTTTTTC AT........ .......... .......... .......... .......... 267 GTTACACCAC ATAAGAAATA TGTTAATAAT TTTTGTTTGT TTGTGAGCTC GACGTTGTTT 75297 .......... .......... .......... .......... .......... .......... 267 TCACAAATTT ATGGTAAAAA AGAGAAGTAG AGAGGAGGTG TTGTTCAAAA CTTATGATGT 75357 .......... .......... .......... .......... .......... .......... 267 TTTACTTAAA TCTGTTCTTG ATGTTCCTTC TCTTTATTGG AGCATTGAAC AGATCGTTGG 75417 |||||||| .......... .......... .......... .......... .......... ..ATCGTTGG 275 ATGATTCAAT TGCTAAGATT CAAAGTGAGC TGCCTTCAAC TAAGGATCCT CTAATTCCAC 75477 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATGATTCAAT TGCTAAGATT CAAAGTGAGC TGCCTTCAAC -AAGGATCCT CTAATTCCAC 334 GGATAACTGA AGAGGTTCCT TCCTTGAGGA CAGATTCTGG AGGAAGTGGA ACGAGAAAGA 75537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATAACTGA AGAGGTTCCT TCCTTGAGGA CAGATTCTGG AGGAAGTGGA ACGAGAAAGA 394 AGACATTTAT GGTTATTGGG ATAAACACGG CCTTCAGTAG TAGAAAAAGG CGCGATTCTA 75597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACATTTAT GGTTATTGGG ATAAACACGG CCTTCAGTAG TAGAAAAAGG CGCGATTCTA 454 TTAGAGAGAC TTGGATGCCT CAAGGTATTA ATTATAAGAT TATTGATGTA TATACTTCTT 75657 |||||||||| |||||||||| |||| TTAGAGAGAC TTGGATGCCT CAAG...... .......... .......... .......... 478 CGGTTTTCAT TTTCTTCCTC CTTTGACAAC ATTTTGTGTG TTTGCGTAGG TACAAAGCTA 75717 | |||||||||| .......... .......... .......... .......... .........G TACAAAGCTA 489 CATAGATTAG AGCAAGAAAA GGGGATAATT GTGCGTTTCA TGATAGGCCA CAGGTATGAT 75777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CATAGATTAG AGCAAGAAAA GGGGATAATT GTGCGTTTCA TGATAGGCCA CAG....... 542 CTGCAGTGCT CCATATCTTC TCCATGCCAA ACATATAGAT TCTCATTCAT CAATGAGTTT 75837 .......... .......... .......... .......... .......... .......... 542 CTGCTGGAGT CTCATATTCT TTCTTGATAA TATGCTTCCT GTTCTTTGTT TTAAATATCC 75897 .......... .......... .......... .......... .......... .......... 542 TTTGTTTCAC TTAAAAGTTG AATGTATGAT TAGCTTTTCA AGAGATATAC GAAGGAAATT 75957 .......... .......... .......... .......... .......... .......... 542 ATCAGAAGCT TTGTTAAGAG TTAGTAATTC ACTACTAAAG ATGAAATGGA AAGATTTAAG 76017 .......... .......... .......... .......... .......... .......... 542 ACAAGGTATA GAGAACTGCC AGTGAGTGAT TATAGAATCA TCTGTAATCT AGCATTCTGG 76077 .......... .......... .......... .......... .......... .......... 542 CACCTTTTTC CTTTTCTATC TGGTAATGTG CAGCATGCCA CTTGTGAACG AAGCTGTAAG 76137 .......... .......... .......... .......... .......... .......... 542 AAGTTCATTA TGCTGCTTAA AGGGACCTGC AAGAACTTTG AATCTTCTAT AAAACACTAT 76197 .......... .......... .......... .......... .......... .......... 542 TTGTCTTCAT ATTTCTTAGA ACAAAATACT AAAGGTATTT AGAGTTGGTA TTCTAACTAA 76257 .......... .......... .......... .......... .......... .......... 542 ATTGGAGGGA GCAGCAACTC GGAAGTACTT ACTTCAGTCC CATCACTGAA AGACGTGACT 76317 .......... .......... .......... .......... .......... .......... 542 TTCGGACTGG GAATGCCATT TGTCGCATAA GTTATGATGA TCCATGCTAA TTTTCCTATT 76377 .......... .......... .......... .......... .......... .......... 542 GTAGCTTCAA AATTATCAAA TTAAAGGATA TTAGCTTTTG TTGAGGATGT AGATTTGAAT 76437 .......... .......... .......... .......... .......... .......... 542 CAATGACATT CAACGCTTCA ATTTACTTCT GTCTTTAGAA ATGTCAAAGA CGTGCAAATA 76497 .......... .......... .......... .......... .......... .......... 542 TCTTGCCATG AGCAGTGTGA TGTGCCTCTT AGTTGCTTAG TTCTTACTTG TGAACACTAT 76557 .......... .......... .......... .......... .......... .......... 542 TCCATCGATC AATTTAGTTG GAACTGAATT ACGCTGTTAT TGCATTTGTA CTTATATTGC 76617 .......... .......... .......... .......... .......... .......... 542 AACTGTAAAA GGCAAAGTAA TAACATCCTT TATGAGTTTC ATGTTTGATG GCTTCTATAC 76677 .......... .......... .......... .......... .......... .......... 542 TTTTCAATCT TGGGTAGATA TATCACAAGC CCTGGAGTAT GGCTTTAACT TGATGCCCAA 76737 .......... .......... .......... .......... .......... .......... 542 CATGATAAGA ATAAGTGCAG GATAAGTGTT TTCTTTTGTC TTCTTTTTTG TTTCTTTTAA 76797 .......... .......... .......... .......... .......... .......... 542 TTGAAATTTT AAACAGCAGC ATGAAAGGTT ACTGTTTATC AGAGTATGAA AGGTTTTTTC 76857 .......... .......... .......... .......... .......... .......... 542 TAGGGCTAAA TGGTGCATTT GGATATAAAT GTGGGAGATT GGTTCTCTTG TGGAAATTGT 76917 .......... .......... .......... .......... .......... .......... 542 ATCTTCCATG ATACTAAGTC ATAGATAAGC CATGAGAGGT TCAGACACAG TATGTTGCAC 76977 .......... .......... .......... .......... .......... .......... 542 ATTTTCTCAC CTATGATAAT CTGCCAAATG CTTTTTGCTA TCCTTCTGGA GGCAGTTTAC 77037 .......... .......... .......... .......... .......... .......... 542 AACTTCCTAA TTTTCGAGGT GTCTGTAAAT TGAGTGATAA TTACATTTCT GCTTAAGGGA 77097 .......... .......... .......... .......... .......... .......... 542 TAAGCTCAGT CACCAAAAGT TTCCATCTTT TCTTTCTGTT CACTTTGTTG TGTTCAGATC 77157 .......... .......... .......... .......... .......... .......... 542 ATGTTATTGA ATTTAATCCC GAAGAAGTTT GTACTAAGTT CAAAAATAGA AGTTCAAGTT 77217 .......... .......... .......... .......... .......... .......... 542 ATTACATCAC ATTAGGTTCA AACAAAAAGA CGAGTAGAAC CATCTAAACT GATGAAAGTT 77277 .......... .......... .......... .......... .......... .......... 542 ATTGGATTGC CCAACAAACT GGATCTTTGA TCACTAGTTC TCAATAAGGA TACAGCCAGG 77337 .......... .......... .......... .......... .......... .......... 542 AAATTCTATG TTTGAGGTTT ACAACATACT TAAACGAGGA AAATGTTTCC TATTCTTTCA 77397 .......... .......... .......... .......... .......... .......... 542 CTTCCTCTCT TTATTTTTTG ATTGTTGTTT TGTTGAGCCT ACACCAATAT AATTATCTGA 77457 .......... .......... .......... .......... .......... .......... 542 AATGTCGTAG GCTGTGCTCT AAAAGTTCTT ATACTCCTTA ATACAGCGCG ATATCGAATA 77517 |||| |||||||||| .......... .......... .......... .......... ......CGCG ATATCGAATA 556 GCATTTTAGA TCGAGCCATT GATAGTGAAG ATGCTCAGCA TAATGACATT CTTCGACTTG 77577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCATTTTAGA TCGAGCCATT GATAGTGAAG ATGCTCAGCA TAATGACATT CTTCGACTT. 615 TAAGTAAAAA ATGTTCTCTG ATTTGCTTCC GTCTGATTGT TTTATCTTTC TAGTTTGATC 77637 .......... .......... .......... .......... .......... .......... 615 TCATTACTAT ATTTTACAGG ATCACGTAGA AGGCTATCAT GAGTTAACTG CAAAAACGAA 77697 | ||||| || | | |||||||| |||||||||| |||||||||| .......... .........G ATCACCTAAA ANGCTATCAT GAGTTAACTG CAAAAACGAA 656 AGCTTTC 77704 ||||||| AGCTTTC 663 hqPGS_C08HBa0037O11.1+_SGN-E551354+ (74578 74667,74905 75013,75122 75189,75410 75621,75707 75770,77504 77576,77657 77704) ******************************************************************************** EST sequence 84 +strand 597 n (File: SGN-E260002+) 1 AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 61 TTTGCTCTTG GTATGCTTTT CTCTAACAGA GTTTGGACTC CTCCAGAATC AGATGGAAGG 121 AACATATTTG GAAGGCGCCA GACGCAAGAA AGAGTCTTGC CTTCTGTTTC TGATGATTGT 181 GAAACCAAAA ACAGTCAGAA GGAGGAGATG ATGGGAGAGT TTAACAAAGC ACAAGTAGCT 241 ATCCAATCGT TGGATGATTC AATTGCTAAG ATTCAAAGTG AGCTGCCTTC AACTAAGGAT 301 CCTCTAATTC CACGGATAAC TGAAGAGGTT CCTTCCTTGA GGACAGATTC TGGAGGAAGT 361 GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA CGGCCTTCAG TAGTAGAAAA 421 AGGCGCGATT CTATTAGAGA GACTTGGATG CCTCAAGGTA CAAAGCTACA TAGATTAGAG 481 CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA GCGCGATATC GAATAGCATT 541 TTAGATCGAG CCATTGATAG TGAAGATGCT CAGCATAATG ACATTCTTCG ACTTGAT Predicted gene structure (within gDNA segment 73979 to 78207): Exon 1 74579 74667 ( 89 n); cDNA 1 89 ( 89 n); score: 1.000 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 74905 75013 ( 109 n); cDNA 90 198 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 75122 75168 ( 47 n); cDNA 199 245 ( 47 n); score: 1.000 Intron 3 75169 75409 ( 241 n); Pd: 0.994 (s: 1.00), Pa: 0.925 (s: 1.00) Exon 4 75410 75621 ( 212 n); cDNA 246 457 ( 212 n); score: 1.000 Intron 4 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 75707 75770 ( 64 n); cDNA 458 521 ( 64 n); score: 1.000 Intron 5 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 6 77504 77576 ( 73 n); cDNA 522 594 ( 73 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E260002+ 1.000 594 0.995 C PGS_C08HBa0037O11.1+_SGN-E260002+ (74579 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77576) Alignment (genomic DNA sequence = upper lines): AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 74638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 60 TTTGCTCTTG GTATGCTTTT CTCTAACAGG TAAAAGGGTC ATGCAAAAAG TGTTTTTTTT 74698 |||||||||| |||||||||| ||||||||| TTTGCTCTTG GTATGCTTTT CTCTAACAG. .......... .......... .......... 89 TTTGGTTATG GGGTTTGAAT TTTTCATGGG GTTTCAATAA AAAAGCTCTC TTTTTTCATC 74758 .......... .......... .......... .......... .......... .......... 89 TATTTGTTCT TCAGAGATTT GGTTCGTGGG TTTTTTTCAA GAAATAGGAA AAAGATGTTT 74818 .......... .......... .......... .......... .......... .......... 89 GTTTTTTTTG CTGAAAAGAT TTGAATTTTA TTGGCTATTT TTTGTGGATT TTCATTTCTT 74878 .......... .......... .......... .......... .......... .......... 89 GATTTTTTGT TTTGTTGTAT AATTAGAGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 74938 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 123 ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 74998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 183 ACCAAAAACA GTCAGGTCTA ACCCCCCACC CCCCAACAAA CAAAGATAAA ACTTTTTTTT 75058 |||||||||| ||||| ACCAAAAACA GTCAG..... .......... .......... .......... .......... 198 TTTTTGTCAT TGTTATAGTT ATTATTGCTG TTTTTTTAAA TATGGATGAT GTTTTATGAG 75118 .......... .......... .......... .......... .......... .......... 198 CAGAAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA GTGAGTTTCA 75178 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA .......... 245 GAGTTTTTCA TGTGATTACC TTAGACTTTA TCTTTTTTGT ACTTAACATG ACAACATATG 75238 .......... .......... .......... .......... .......... .......... 245 TTACACCACA TAAGAAATAT GTTAATAATT TTTGTTTGTT TGTGAGCTCG ACGTTGTTTT 75298 .......... .......... .......... .......... .......... .......... 245 CACAAATTTA TGGTAAAAAA GAGAAGTAGA GAGGAGGTGT TGTTCAAAAC TTATGATGTT 75358 .......... .......... .......... .......... .......... .......... 245 TTACTTAAAT CTGTTCTTGA TGTTCCTTCT CTTTATTGGA GCATTGAACA GATCGTTGGA 75418 ||||||||| .......... .......... .......... .......... .......... .ATCGTTGGA 254 TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 75478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 314 GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 75538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 374 GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTAT 75598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTAT 434 TAGAGAGACT TGGATGCCTC AAGGTATTAA TTATAAGATT ATTGATGTAT ATACTTCTTC 75658 |||||||||| |||||||||| ||| TAGAGAGACT TGGATGCCTC AAG....... .......... .......... .......... 457 GGTTTTCATT TTCTTCCTCC TTTGACAACA TTTTGTGTGT TTGCGTAGGT ACAAAGCTAC 75718 || |||||||||| .......... .......... .......... .......... ........GT ACAAAGCTAC 469 ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC AGGTATGATC 75778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC AG........ 521 TGCAGTGCTC CATATCTTCT CCATGCCAAA CATATAGATT CTCATTCATC AATGAGTTTC 75838 .......... .......... .......... .......... .......... .......... 521 TGCTGGAGTC TCATATTCTT TCTTGATAAT ATGCTTCCTG TTCTTTGTTT TAAATATCCT 75898 .......... .......... .......... .......... .......... .......... 521 TTGTTTCACT TAAAAGTTGA ATGTATGATT AGCTTTTCAA GAGATATACG AAGGAAATTA 75958 .......... .......... .......... .......... .......... .......... 521 TCAGAAGCTT TGTTAAGAGT TAGTAATTCA CTACTAAAGA TGAAATGGAA AGATTTAAGA 76018 .......... .......... .......... .......... .......... .......... 521 CAAGGTATAG AGAACTGCCA GTGAGTGATT ATAGAATCAT CTGTAATCTA GCATTCTGGC 76078 .......... .......... .......... .......... .......... .......... 521 ACCTTTTTCC TTTTCTATCT GGTAATGTGC AGCATGCCAC TTGTGAACGA AGCTGTAAGA 76138 .......... .......... .......... .......... .......... .......... 521 AGTTCATTAT GCTGCTTAAA GGGACCTGCA AGAACTTTGA ATCTTCTATA AAACACTATT 76198 .......... .......... .......... .......... .......... .......... 521 TGTCTTCATA TTTCTTAGAA CAAAATACTA AAGGTATTTA GAGTTGGTAT TCTAACTAAA 76258 .......... .......... .......... .......... .......... .......... 521 TTGGAGGGAG CAGCAACTCG GAAGTACTTA CTTCAGTCCC ATCACTGAAA GACGTGACTT 76318 .......... .......... .......... .......... .......... .......... 521 TCGGACTGGG AATGCCATTT GTCGCATAAG TTATGATGAT CCATGCTAAT TTTCCTATTG 76378 .......... .......... .......... .......... .......... .......... 521 TAGCTTCAAA ATTATCAAAT TAAAGGATAT TAGCTTTTGT TGAGGATGTA GATTTGAATC 76438 .......... .......... .......... .......... .......... .......... 521 AATGACATTC AACGCTTCAA TTTACTTCTG TCTTTAGAAA TGTCAAAGAC GTGCAAATAT 76498 .......... .......... .......... .......... .......... .......... 521 CTTGCCATGA GCAGTGTGAT GTGCCTCTTA GTTGCTTAGT TCTTACTTGT GAACACTATT 76558 .......... .......... .......... .......... .......... .......... 521 CCATCGATCA ATTTAGTTGG AACTGAATTA CGCTGTTATT GCATTTGTAC TTATATTGCA 76618 .......... .......... .......... .......... .......... .......... 521 ACTGTAAAAG GCAAAGTAAT AACATCCTTT ATGAGTTTCA TGTTTGATGG CTTCTATACT 76678 .......... .......... .......... .......... .......... .......... 521 TTTCAATCTT GGGTAGATAT ATCACAAGCC CTGGAGTATG GCTTTAACTT GATGCCCAAC 76738 .......... .......... .......... .......... .......... .......... 521 ATGATAAGAA TAAGTGCAGG ATAAGTGTTT TCTTTTGTCT TCTTTTTTGT TTCTTTTAAT 76798 .......... .......... .......... .......... .......... .......... 521 TGAAATTTTA AACAGCAGCA TGAAAGGTTA CTGTTTATCA GAGTATGAAA GGTTTTTTCT 76858 .......... .......... .......... .......... .......... .......... 521 AGGGCTAAAT GGTGCATTTG GATATAAATG TGGGAGATTG GTTCTCTTGT GGAAATTGTA 76918 .......... .......... .......... .......... .......... .......... 521 TCTTCCATGA TACTAAGTCA TAGATAAGCC ATGAGAGGTT CAGACACAGT ATGTTGCACA 76978 .......... .......... .......... .......... .......... .......... 521 TTTTCTCACC TATGATAATC TGCCAAATGC TTTTTGCTAT CCTTCTGGAG GCAGTTTACA 77038 .......... .......... .......... .......... .......... .......... 521 ACTTCCTAAT TTTCGAGGTG TCTGTAAATT GAGTGATAAT TACATTTCTG CTTAAGGGAT 77098 .......... .......... .......... .......... .......... .......... 521 AAGCTCAGTC ACCAAAAGTT TCCATCTTTT CTTTCTGTTC ACTTTGTTGT GTTCAGATCA 77158 .......... .......... .......... .......... .......... .......... 521 TGTTATTGAA TTTAATCCCG AAGAAGTTTG TACTAAGTTC AAAAATAGAA GTTCAAGTTA 77218 .......... .......... .......... .......... .......... .......... 521 TTACATCACA TTAGGTTCAA ACAAAAAGAC GAGTAGAACC ATCTAAACTG ATGAAAGTTA 77278 .......... .......... .......... .......... .......... .......... 521 TTGGATTGCC CAACAAACTG GATCTTTGAT CACTAGTTCT CAATAAGGAT ACAGCCAGGA 77338 .......... .......... .......... .......... .......... .......... 521 AATTCTATGT TTGAGGTTTA CAACATACTT AAACGAGGAA AATGTTTCCT ATTCTTTCAC 77398 .......... .......... .......... .......... .......... .......... 521 TTCCTCTCTT TATTTTTTGA TTGTTGTTTT GTTGAGCCTA CACCAATATA ATTATCTGAA 77458 .......... .......... .......... .......... .......... .......... 521 ATGTCGTAGG CTGTGCTCTA AAAGTTCTTA TACTCCTTAA TACAGCGCGA TATCGAATAG 77518 ||||| |||||||||| .......... .......... .......... .......... .....CGCGA TATCGAATAG 536 CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC TTCGACTT 77576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC TTCGACTT 594 hqPGS_C08HBa0037O11.1+_SGN-E260002+ (74579 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77576) ******************************************************************************** EST sequence 30 +strand 604 n (File: SGN-E253525+) 1 AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 61 TTTGCTCTTG GTATGCTTTT CTCTAACAGA GTTTGGACTC CTCCAGAATC AGATGGAAGG 121 AACATATTTG GAAAGCGCCA GACGCAAGAA AGAGTCTTGC CTTCTGTTTC TGATGATTGT 181 GAAACCAAAA ACAGTCAGAA GGAGGAGATG ATGGGAGAGT TTAACAAAGC ACAAGTAGCT 241 ATCCAGTGAG TTTCAGAGTT TTTCATATCG TTGGATGATT CAATTGCTAA GATTCAAAGT 301 GAGCTGCCTT CAACTAAGGA TCCTCTAATT CCACGGATAA CTGAAGAGGT TCCTTCCTTG 361 AGGACAGATT CTGGAGGAAG TGGAACGAGA AAGAAGACAT TTATGGTTAT TGGGATAAAC 421 ACGGCCTTCA GTAGTAGAAA AAGGCGCGAT TCTATTAGAG AGACTTGGAT GCCTCAAGGT 481 ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 541 AGCGCGATAT CGAATAGCAT TTTAGATCGA GCCATTGATA GTGAAGATGC TCAGCATAAT 601 GACA Predicted gene structure (within gDNA segment 73979 to 78175): Exon 1 74579 74667 ( 89 n); cDNA 1 89 ( 89 n); score: 1.000 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 2 74905 75013 ( 109 n); cDNA 90 198 ( 109 n); score: 0.991 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 75122 75189 ( 68 n); cDNA 199 266 ( 68 n); score: 1.000 Intron 3 75190 75409 ( 220 n); Pd: 0.567 (s: 1.00), Pa: 0.925 (s: 1.00) Exon 4 75410 75621 ( 212 n); cDNA 267 478 ( 212 n); score: 1.000 Intron 4 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 75707 75770 ( 64 n); cDNA 479 542 ( 64 n); score: 1.000 Intron 5 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 6 77504 77565 ( 62 n); cDNA 543 604 ( 62 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E253525+ 0.998 604 1.000 C PGS_C08HBa0037O11.1+_SGN-E253525+ (74579 74667,74905 75013,75122 75189,75410 75621,75707 75770,77504 77565) Alignment (genomic DNA sequence = upper lines): AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 74638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 60 TTTGCTCTTG GTATGCTTTT CTCTAACAGG TAAAAGGGTC ATGCAAAAAG TGTTTTTTTT 74698 |||||||||| |||||||||| ||||||||| TTTGCTCTTG GTATGCTTTT CTCTAACAG. .......... .......... .......... 89 TTTGGTTATG GGGTTTGAAT TTTTCATGGG GTTTCAATAA AAAAGCTCTC TTTTTTCATC 74758 .......... .......... .......... .......... .......... .......... 89 TATTTGTTCT TCAGAGATTT GGTTCGTGGG TTTTTTTCAA GAAATAGGAA AAAGATGTTT 74818 .......... .......... .......... .......... .......... .......... 89 GTTTTTTTTG CTGAAAAGAT TTGAATTTTA TTGGCTATTT TTTGTGGATT TTCATTTCTT 74878 .......... .......... .......... .......... .......... .......... 89 GATTTTTTGT TTTGTTGTAT AATTAGAGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 74938 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 123 ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 74998 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTGGAA AGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 183 ACCAAAAACA GTCAGGTCTA ACCCCCCACC CCCCAACAAA CAAAGATAAA ACTTTTTTTT 75058 |||||||||| ||||| ACCAAAAACA GTCAG..... .......... .......... .......... .......... 198 TTTTTGTCAT TGTTATAGTT ATTATTGCTG TTTTTTTAAA TATGGATGAT GTTTTATGAG 75118 .......... .......... .......... .......... .......... .......... 198 CAGAAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA GTGAGTTTCA 75178 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA GTGAGTTTCA 255 GAGTTTTTCA TGTGATTACC TTAGACTTTA TCTTTTTTGT ACTTAACATG ACAACATATG 75238 |||||||||| | GAGTTTTTCA T......... .......... .......... .......... .......... 266 TTACACCACA TAAGAAATAT GTTAATAATT TTTGTTTGTT TGTGAGCTCG ACGTTGTTTT 75298 .......... .......... .......... .......... .......... .......... 266 CACAAATTTA TGGTAAAAAA GAGAAGTAGA GAGGAGGTGT TGTTCAAAAC TTATGATGTT 75358 .......... .......... .......... .......... .......... .......... 266 TTACTTAAAT CTGTTCTTGA TGTTCCTTCT CTTTATTGGA GCATTGAACA GATCGTTGGA 75418 ||||||||| .......... .......... .......... .......... .......... .ATCGTTGGA 275 TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 75478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 335 GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 75538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 395 GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTAT 75598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTAT 455 TAGAGAGACT TGGATGCCTC AAGGTATTAA TTATAAGATT ATTGATGTAT ATACTTCTTC 75658 |||||||||| |||||||||| ||| TAGAGAGACT TGGATGCCTC AAG....... .......... .......... .......... 478 GGTTTTCATT TTCTTCCTCC TTTGACAACA TTTTGTGTGT TTGCGTAGGT ACAAAGCTAC 75718 || |||||||||| .......... .......... .......... .......... ........GT ACAAAGCTAC 490 ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC AGGTATGATC 75778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC AG........ 542 TGCAGTGCTC CATATCTTCT CCATGCCAAA CATATAGATT CTCATTCATC AATGAGTTTC 75838 .......... .......... .......... .......... .......... .......... 542 TGCTGGAGTC TCATATTCTT TCTTGATAAT ATGCTTCCTG TTCTTTGTTT TAAATATCCT 75898 .......... .......... .......... .......... .......... .......... 542 TTGTTTCACT TAAAAGTTGA ATGTATGATT AGCTTTTCAA GAGATATACG AAGGAAATTA 75958 .......... .......... .......... .......... .......... .......... 542 TCAGAAGCTT TGTTAAGAGT TAGTAATTCA CTACTAAAGA TGAAATGGAA AGATTTAAGA 76018 .......... .......... .......... .......... .......... .......... 542 CAAGGTATAG AGAACTGCCA GTGAGTGATT ATAGAATCAT CTGTAATCTA GCATTCTGGC 76078 .......... .......... .......... .......... .......... .......... 542 ACCTTTTTCC TTTTCTATCT GGTAATGTGC AGCATGCCAC TTGTGAACGA AGCTGTAAGA 76138 .......... .......... .......... .......... .......... .......... 542 AGTTCATTAT GCTGCTTAAA GGGACCTGCA AGAACTTTGA ATCTTCTATA AAACACTATT 76198 .......... .......... .......... .......... .......... .......... 542 TGTCTTCATA TTTCTTAGAA CAAAATACTA AAGGTATTTA GAGTTGGTAT TCTAACTAAA 76258 .......... .......... .......... .......... .......... .......... 542 TTGGAGGGAG CAGCAACTCG GAAGTACTTA CTTCAGTCCC ATCACTGAAA GACGTGACTT 76318 .......... .......... .......... .......... .......... .......... 542 TCGGACTGGG AATGCCATTT GTCGCATAAG TTATGATGAT CCATGCTAAT TTTCCTATTG 76378 .......... .......... .......... .......... .......... .......... 542 TAGCTTCAAA ATTATCAAAT TAAAGGATAT TAGCTTTTGT TGAGGATGTA GATTTGAATC 76438 .......... .......... .......... .......... .......... .......... 542 AATGACATTC AACGCTTCAA TTTACTTCTG TCTTTAGAAA TGTCAAAGAC GTGCAAATAT 76498 .......... .......... .......... .......... .......... .......... 542 CTTGCCATGA GCAGTGTGAT GTGCCTCTTA GTTGCTTAGT TCTTACTTGT GAACACTATT 76558 .......... .......... .......... .......... .......... .......... 542 CCATCGATCA ATTTAGTTGG AACTGAATTA CGCTGTTATT GCATTTGTAC TTATATTGCA 76618 .......... .......... .......... .......... .......... .......... 542 ACTGTAAAAG GCAAAGTAAT AACATCCTTT ATGAGTTTCA TGTTTGATGG CTTCTATACT 76678 .......... .......... .......... .......... .......... .......... 542 TTTCAATCTT GGGTAGATAT ATCACAAGCC CTGGAGTATG GCTTTAACTT GATGCCCAAC 76738 .......... .......... .......... .......... .......... .......... 542 ATGATAAGAA TAAGTGCAGG ATAAGTGTTT TCTTTTGTCT TCTTTTTTGT TTCTTTTAAT 76798 .......... .......... .......... .......... .......... .......... 542 TGAAATTTTA AACAGCAGCA TGAAAGGTTA CTGTTTATCA GAGTATGAAA GGTTTTTTCT 76858 .......... .......... .......... .......... .......... .......... 542 AGGGCTAAAT GGTGCATTTG GATATAAATG TGGGAGATTG GTTCTCTTGT GGAAATTGTA 76918 .......... .......... .......... .......... .......... .......... 542 TCTTCCATGA TACTAAGTCA TAGATAAGCC ATGAGAGGTT CAGACACAGT ATGTTGCACA 76978 .......... .......... .......... .......... .......... .......... 542 TTTTCTCACC TATGATAATC TGCCAAATGC TTTTTGCTAT CCTTCTGGAG GCAGTTTACA 77038 .......... .......... .......... .......... .......... .......... 542 ACTTCCTAAT TTTCGAGGTG TCTGTAAATT GAGTGATAAT TACATTTCTG CTTAAGGGAT 77098 .......... .......... .......... .......... .......... .......... 542 AAGCTCAGTC ACCAAAAGTT TCCATCTTTT CTTTCTGTTC ACTTTGTTGT GTTCAGATCA 77158 .......... .......... .......... .......... .......... .......... 542 TGTTATTGAA TTTAATCCCG AAGAAGTTTG TACTAAGTTC AAAAATAGAA GTTCAAGTTA 77218 .......... .......... .......... .......... .......... .......... 542 TTACATCACA TTAGGTTCAA ACAAAAAGAC GAGTAGAACC ATCTAAACTG ATGAAAGTTA 77278 .......... .......... .......... .......... .......... .......... 542 TTGGATTGCC CAACAAACTG GATCTTTGAT CACTAGTTCT CAATAAGGAT ACAGCCAGGA 77338 .......... .......... .......... .......... .......... .......... 542 AATTCTATGT TTGAGGTTTA CAACATACTT AAACGAGGAA AATGTTTCCT ATTCTTTCAC 77398 .......... .......... .......... .......... .......... .......... 542 TTCCTCTCTT TATTTTTTGA TTGTTGTTTT GTTGAGCCTA CACCAATATA ATTATCTGAA 77458 .......... .......... .......... .......... .......... .......... 542 ATGTCGTAGG CTGTGCTCTA AAAGTTCTTA TACTCCTTAA TACAGCGCGA TATCGAATAG 77518 ||||| |||||||||| .......... .......... .......... .......... .....CGCGA TATCGAATAG 557 CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACA 77565 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACA 604 hqPGS_C08HBa0037O11.1+_SGN-E253525+ (74579 74667,74905 75013,75122 75189,75410 75621,75707 75770,77504 77565) ******************************************************************************** EST sequence 15 +strand 513 n (File: SGN-E251837+) 1 AATAATCGAA ACATTTCCAA AATCTTAACT AAATGGATTG CTATTGGTTG TATTTTTAGC 61 TTTGCTCTTG GTATGCTTTT CTCTAACAGA GTTTGGACTC CTCCAGAATC AGATGGAAGG 121 AACATATTTG GAAGGCGCCA GACGCAAGAA AGAGTCTTGC CTTCTGTTTC TGATGATTGT 181 GAAACCAAAA ACAGTCAGAA GGAGGAGATG ATGGGAGAGT TTAACAAAGC ACAAGTAGCT 241 ATCCAATCGT TGGATGATTC AATTGCTAAG ATTCAAAGTG AGCTGCCTTC AACTAAGGAT 301 CCTCTAATTC CACGGATAAC TGAAGAGGTT CCTTCCTTGA GGACAGATTC TGGAGGAAGT 361 GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA CGGCCTTCAG TAATAGAAAA 421 AGGCGCGATT CTATTAGAGA GACTTGGATG CCTCAAGGTA CAAAGCTACA TAGATTAGAG 481 CAAGAAAAGG GGATAATTGT GCGTTTCATG ATA Predicted gene structure (within gDNA segment 73745 to 76372): Exon 1 74579 74667 ( 89 n); cDNA 1 89 ( 89 n); score: 0.921 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 0.96), Pa: 0.999 (s: 1.00) Exon 2 74905 75013 ( 109 n); cDNA 90 198 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 75122 75168 ( 47 n); cDNA 199 245 ( 47 n); score: 1.000 Intron 3 75169 75409 ( 241 n); Pd: 0.994 (s: 1.00), Pa: 0.925 (s: 1.00) Exon 4 75410 75621 ( 212 n); cDNA 246 457 ( 212 n); score: 0.995 Intron 4 75622 75706 ( 85 n); Pd: 0.995 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 5 75707 75762 ( 56 n); cDNA 458 513 ( 56 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E251837+ 0.983 513 1.000 C PGS_C08HBa0037O11.1+_SGN-E251837+ (74579 74667,74905 75013,75122 75168,75410 75621,75707 75762) Alignment (genomic DNA sequence = upper lines): AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 74638 || ||||||| ||| |||| ||||| |||| |||||||||| ||||| ||| |||||||||| AATAATCGAA ACATTTCCAA AATCTTAACT AAATGGATTG CTATTGGTTG TATTTTTAGC 60 TTTGCTCTTG GTATGCTTTT CTCTAACAGG TAAAAGGGTC ATGCAAAAAG TGTTTTTTTT 74698 |||||||||| |||||||||| ||||||||| TTTGCTCTTG GTATGCTTTT CTCTAACAG. .......... .......... .......... 89 TTTGGTTATG GGGTTTGAAT TTTTCATGGG GTTTCAATAA AAAAGCTCTC TTTTTTCATC 74758 .......... .......... .......... .......... .......... .......... 89 TATTTGTTCT TCAGAGATTT GGTTCGTGGG TTTTTTTCAA GAAATAGGAA AAAGATGTTT 74818 .......... .......... .......... .......... .......... .......... 89 GTTTTTTTTG CTGAAAAGAT TTGAATTTTA TTGGCTATTT TTTGTGGATT TTCATTTCTT 74878 .......... .......... .......... .......... .......... .......... 89 GATTTTTTGT TTTGTTGTAT AATTAGAGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 74938 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 123 ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 74998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 183 ACCAAAAACA GTCAGGTCTA ACCCCCCACC CCCCAACAAA CAAAGATAAA ACTTTTTTTT 75058 |||||||||| ||||| ACCAAAAACA GTCAG..... .......... .......... .......... .......... 198 TTTTTGTCAT TGTTATAGTT ATTATTGCTG TTTTTTTAAA TATGGATGAT GTTTTATGAG 75118 .......... .......... .......... .......... .......... .......... 198 CAGAAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA GTGAGTTTCA 75178 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA .......... 245 GAGTTTTTCA TGTGATTACC TTAGACTTTA TCTTTTTTGT ACTTAACATG ACAACATATG 75238 .......... .......... .......... .......... .......... .......... 245 TTACACCACA TAAGAAATAT GTTAATAATT TTTGTTTGTT TGTGAGCTCG ACGTTGTTTT 75298 .......... .......... .......... .......... .......... .......... 245 CACAAATTTA TGGTAAAAAA GAGAAGTAGA GAGGAGGTGT TGTTCAAAAC TTATGATGTT 75358 .......... .......... .......... .......... .......... .......... 245 TTACTTAAAT CTGTTCTTGA TGTTCCTTCT CTTTATTGGA GCATTGAACA GATCGTTGGA 75418 ||||||||| .......... .......... .......... .......... .......... .ATCGTTGGA 254 TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 75478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 314 GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 75538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 374 GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTAT 75598 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAAT AGAAAAAGGC GCGATTCTAT 434 TAGAGAGACT TGGATGCCTC AAGGTATTAA TTATAAGATT ATTGATGTAT ATACTTCTTC 75658 |||||||||| |||||||||| ||| TAGAGAGACT TGGATGCCTC AAG....... .......... .......... .......... 457 GGTTTTCATT TTCTTCCTCC TTTGACAACA TTTTGTGTGT TTGCGTAGGT ACAAAGCTAC 75718 || |||||||||| .......... .......... .......... .......... ........GT ACAAAGCTAC 469 ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATA 75762 |||||||||| |||||||||| |||||||||| |||||||||| |||| ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATA 513 hqPGS_C08HBa0037O11.1+_SGN-E251837+ (74579 74667,74905 75013,75122 75168,75410 75621,75707 75762) ******************************************************************************** EST sequence 67 +strand 485 n (File: SGN-E259078+) 1 AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 61 TTTGCTCTTG GTATGCTTTT CTCTAACAGA GTTTGGACTC CTCCAGAATC AGATGGAAGG 121 AACATATTTG GAAGGCGCCA GACGCAAGAA AGAGTCTTGC CTTCTGTTTC TGATGATTGT 181 GAAACCAAAA ACAGTCAGAA GGAGGAGATG ATGGGAGAGT TTAACAAAGC ACAAGTAGCT 241 ATCCAATCGT TGGATGATTC AATTGCTAAG ATTCAAAGTG AGCTGCCTTC AACTAAGGAT 301 CCTCTAATTC CACGGATAAC TGAAGAGGTT CCTTCCTTGA GGACAGATTC TGGAGGAAGT 361 GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA CGGCCTTCAG TAGTAGAAAA 421 AGGCGCGATT CTATTAGAGA GACTTGGATG CCTCAAGGTA CAAAGCTACA TAGATTAGAG 481 CAAGA Predicted gene structure (within gDNA segment 73979 to 76344): Exon 1 74579 74667 ( 89 n); cDNA 1 89 ( 89 n); score: 1.000 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 74905 75013 ( 109 n); cDNA 90 198 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 75122 75168 ( 47 n); cDNA 199 245 ( 47 n); score: 1.000 Intron 3 75169 75409 ( 241 n); Pd: 0.994 (s: 1.00), Pa: 0.925 (s: 1.00) Exon 4 75410 75621 ( 212 n); cDNA 246 457 ( 212 n); score: 1.000 Intron 4 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 75707 75734 ( 28 n); cDNA 458 485 ( 28 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E259078+ 1.000 485 1.000 C PGS_C08HBa0037O11.1+_SGN-E259078+ (74579 74667,74905 75013,75122 75168,75410 75621,75707 75734) Alignment (genomic DNA sequence = upper lines): AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 74638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 60 TTTGCTCTTG GTATGCTTTT CTCTAACAGG TAAAAGGGTC ATGCAAAAAG TGTTTTTTTT 74698 |||||||||| |||||||||| ||||||||| TTTGCTCTTG GTATGCTTTT CTCTAACAG. .......... .......... .......... 89 TTTGGTTATG GGGTTTGAAT TTTTCATGGG GTTTCAATAA AAAAGCTCTC TTTTTTCATC 74758 .......... .......... .......... .......... .......... .......... 89 TATTTGTTCT TCAGAGATTT GGTTCGTGGG TTTTTTTCAA GAAATAGGAA AAAGATGTTT 74818 .......... .......... .......... .......... .......... .......... 89 GTTTTTTTTG CTGAAAAGAT TTGAATTTTA TTGGCTATTT TTTGTGGATT TTCATTTCTT 74878 .......... .......... .......... .......... .......... .......... 89 GATTTTTTGT TTTGTTGTAT AATTAGAGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 74938 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 123 ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 74998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 183 ACCAAAAACA GTCAGGTCTA ACCCCCCACC CCCCAACAAA CAAAGATAAA ACTTTTTTTT 75058 |||||||||| ||||| ACCAAAAACA GTCAG..... .......... .......... .......... .......... 198 TTTTTGTCAT TGTTATAGTT ATTATTGCTG TTTTTTTAAA TATGGATGAT GTTTTATGAG 75118 .......... .......... .......... .......... .......... .......... 198 CAGAAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA GTGAGTTTCA 75178 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA .......... 245 GAGTTTTTCA TGTGATTACC TTAGACTTTA TCTTTTTTGT ACTTAACATG ACAACATATG 75238 .......... .......... .......... .......... .......... .......... 245 TTACACCACA TAAGAAATAT GTTAATAATT TTTGTTTGTT TGTGAGCTCG ACGTTGTTTT 75298 .......... .......... .......... .......... .......... .......... 245 CACAAATTTA TGGTAAAAAA GAGAAGTAGA GAGGAGGTGT TGTTCAAAAC TTATGATGTT 75358 .......... .......... .......... .......... .......... .......... 245 TTACTTAAAT CTGTTCTTGA TGTTCCTTCT CTTTATTGGA GCATTGAACA GATCGTTGGA 75418 ||||||||| .......... .......... .......... .......... .......... .ATCGTTGGA 254 TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 75478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 314 GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 75538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 374 GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTAT 75598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTAT 434 TAGAGAGACT TGGATGCCTC AAGGTATTAA TTATAAGATT ATTGATGTAT ATACTTCTTC 75658 |||||||||| |||||||||| ||| TAGAGAGACT TGGATGCCTC AAG....... .......... .......... .......... 457 GGTTTTCATT TTCTTCCTCC TTTGACAACA TTTTGTGTGT TTGCGTAGGT ACAAAGCTAC 75718 || |||||||||| .......... .......... .......... .......... ........GT ACAAAGCTAC 469 ATAGATTAGA GCAAGA 75734 |||||||||| |||||| ATAGATTAGA GCAAGA 485 hqPGS_C08HBa0037O11.1+_SGN-E259078+ (74579 74667,74905 75013,75122 75168,75410 75621,75707 75734) ******************************************************************************** EST sequence 86 +strand 453 n (File: SGN-E260139+) 1 AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 61 TTTGCTCTTG GTATGCTTTT CTCTAACAGA GTTTGGACTC CTCCAGAATC AGATGGAAGG 121 AACATATTTG GAAGGCGCCA GACGCAAGAA AGAGTCTTGC CTTCTGTTTC TGATGATTGT 181 GAAACCAAAA ACAGTCAGAA GGAGGAGATG ATGGGAGAGT TTAACAAAGC ACAAGTAGCT 241 ATCCAGTGAG TTTCAGAGTT TTTCATATCG TTGGATGATT CAATTGCTAA GATTCAAAGT 301 GAGCTGCCTT CAACAAGGAT CCTCTAATTC CACGGATAAC TGAAGAGGTT CCTTCCTTGA 361 GGACAGATTC TGGAGGAAGT GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA 421 CGGCCTTCAG TAGTAGAAAA AGGCGCGATT CTA Predicted gene structure (within gDNA segment 73979 to 76207): Exon 1 74579 74667 ( 89 n); cDNA 1 89 ( 89 n); score: 1.000 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 74905 75013 ( 109 n); cDNA 90 198 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 75122 75189 ( 68 n); cDNA 199 266 ( 68 n); score: 1.000 Intron 3 75190 75409 ( 220 n); Pd: 0.567 (s: 1.00), Pa: 0.925 (s: 0.98) Exon 4 75410 75597 ( 188 n); cDNA 267 453 ( 187 n); score: 0.995 MATCH C08HBa0037O11.1+ SGN-E260139+ 0.998 454 1.002 C PGS_C08HBa0037O11.1+_SGN-E260139+ (74579 74667,74905 75013,75122 75189,75410 75597) Alignment (genomic DNA sequence = upper lines): AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 74638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCGAA ACAGAGCCAA AATCTCAACT AAATGGATTG CTATTCTTTG TATTTTTAGC 60 TTTGCTCTTG GTATGCTTTT CTCTAACAGG TAAAAGGGTC ATGCAAAAAG TGTTTTTTTT 74698 |||||||||| |||||||||| ||||||||| TTTGCTCTTG GTATGCTTTT CTCTAACAG. .......... .......... .......... 89 TTTGGTTATG GGGTTTGAAT TTTTCATGGG GTTTCAATAA AAAAGCTCTC TTTTTTCATC 74758 .......... .......... .......... .......... .......... .......... 89 TATTTGTTCT TCAGAGATTT GGTTCGTGGG TTTTTTTCAA GAAATAGGAA AAAGATGTTT 74818 .......... .......... .......... .......... .......... .......... 89 GTTTTTTTTG CTGAAAAGAT TTGAATTTTA TTGGCTATTT TTTGTGGATT TTCATTTCTT 74878 .......... .......... .......... .......... .......... .......... 89 GATTTTTTGT TTTGTTGTAT AATTAGAGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 74938 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AGTT TGGACTCCTC CAGAATCAGA TGGAAGGAAC 123 ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 74998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTGGAA GGCGCCAGAC GCAAGAAAGA GTCTTGCCTT CTGTTTCTGA TGATTGTGAA 183 ACCAAAAACA GTCAGGTCTA ACCCCCCACC CCCCAACAAA CAAAGATAAA ACTTTTTTTT 75058 |||||||||| ||||| ACCAAAAACA GTCAG..... .......... .......... .......... .......... 198 TTTTTGTCAT TGTTATAGTT ATTATTGCTG TTTTTTTAAA TATGGATGAT GTTTTATGAG 75118 .......... .......... .......... .......... .......... .......... 198 CAGAAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA GTGAGTTTCA 75178 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AAGGAGG AGATGATGGG AGAGTTTAAC AAAGCACAAG TAGCTATCCA GTGAGTTTCA 255 GAGTTTTTCA TGTGATTACC TTAGACTTTA TCTTTTTTGT ACTTAACATG ACAACATATG 75238 |||||||||| | GAGTTTTTCA T......... .......... .......... .......... .......... 266 TTACACCACA TAAGAAATAT GTTAATAATT TTTGTTTGTT TGTGAGCTCG ACGTTGTTTT 75298 .......... .......... .......... .......... .......... .......... 266 CACAAATTTA TGGTAAAAAA GAGAAGTAGA GAGGAGGTGT TGTTCAAAAC TTATGATGTT 75358 .......... .......... .......... .......... .......... .......... 266 TTACTTAAAT CTGTTCTTGA TGTTCCTTCT CTTTATTGGA GCATTGAACA GATCGTTGGA 75418 ||||||||| .......... .......... .......... .......... .......... .ATCGTTGGA 275 TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAACT AAGGATCCTC TAATTCCACG 75478 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGATTCAATT GCTAAGATTC AAAGTGAGCT GCCTTCAAC- AAGGATCCTC TAATTCCACG 334 GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 75538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA CGAGAAAGAA 394 GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTA 75597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC GCGATTCTA 453 hqPGS_C08HBa0037O11.1+_SGN-E260139+ (74579 74667,74905 75013,75122 75189,75410 75597) ******************************************************************************** EST sequence 53 +strand 588 n (File: SGN-E206245+) 1 AGAATCGAAA CAGAGCCAAA ATCTCAACTA AATGGATTGC TATTCTTTGT ATTTTTAGCT 61 TTGCTCTTGG TATGCTTTTC TCTAACAGAG TTTGGACTCC TCCAGAATCA GATGGAAGGA 121 ACATATTTGG AAGGCGCCAG ACGCAAGAAA GAGTCTTGCC TTCTGTTTCT GATGATTGTG 181 AAACCAAAAA CAGTCAGAAG GAGGAGATGA TGGGAGAGTT TAACAAAGCA CAAGTAGCTA 241 TCCAATCGTT GGATGATTCA ATTGCTAAGA TTCAAAGTGA GCTGCCTTCA ACTAAGGATC 301 CTCTAATTCC ACGGATAACT GAAGAGGTTC CTTCCTTGAG GACAGATTCT GGAGGAAGTG 361 GAACGAGAAA GAAGACATTT ATGGTTATTG GGATAAACAC GGCCTTCAGT AGTAGAAAAA 421 GGCGCGATTC TATTAGAGAG ACTTGGATGC CTCAAGGTAC AAAGCTACAT AGATTAGAGC 481 AAGAAAAGGG GATAATTGTG CGTTTCATGA TAGGCCACAG CGCGATATCG AATAGCATTT 541 TAGATCGAGC CATTGATAGT GAAGATGCTC AGCATAATGA CATTCTTC Predicted gene structure (within gDNA segment 73980 to 78181): Exon 1 74580 74667 ( 88 n); cDNA 1 88 ( 88 n); score: 1.000 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 74905 75013 ( 109 n); cDNA 89 197 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 75122 75168 ( 47 n); cDNA 198 244 ( 47 n); score: 1.000 Intron 3 75169 75409 ( 241 n); Pd: 0.994 (s: 1.00), Pa: 0.925 (s: 1.00) Exon 4 75410 75621 ( 212 n); cDNA 245 456 ( 212 n); score: 1.000 Intron 4 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 75707 75770 ( 64 n); cDNA 457 520 ( 64 n); score: 1.000 Intron 5 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 6 77504 77571 ( 68 n); cDNA 521 588 ( 68 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E206245+ 1.000 588 1.000 C PGS_C08HBa0037O11.1+_SGN-E206245+ (74580 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77571) Alignment (genomic DNA sequence = upper lines): AGAATCGAAA CAGAGCCAAA ATCTCAACTA AATGGATTGC TATTCTTTGT ATTTTTAGCT 74639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCGAAA CAGAGCCAAA ATCTCAACTA AATGGATTGC TATTCTTTGT ATTTTTAGCT 60 TTGCTCTTGG TATGCTTTTC TCTAACAGGT AAAAGGGTCA TGCAAAAAGT GTTTTTTTTT 74699 |||||||||| |||||||||| |||||||| TTGCTCTTGG TATGCTTTTC TCTAACAG.. .......... .......... .......... 88 TTGGTTATGG GGTTTGAATT TTTCATGGGG TTTCAATAAA AAAGCTCTCT TTTTTCATCT 74759 .......... .......... .......... .......... .......... .......... 88 ATTTGTTCTT CAGAGATTTG GTTCGTGGGT TTTTTTCAAG AAATAGGAAA AAGATGTTTG 74819 .......... .......... .......... .......... .......... .......... 88 TTTTTTTTGC TGAAAAGATT TGAATTTTAT TGGCTATTTT TTGTGGATTT TCATTTCTTG 74879 .......... .......... .......... .......... .......... .......... 88 ATTTTTTGTT TTGTTGTATA ATTAGAGTTT GGACTCCTCC AGAATCAGAT GGAAGGAACA 74939 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....AGTTT GGACTCCTCC AGAATCAGAT GGAAGGAACA 123 TATTTGGAAG GCGCCAGACG CAAGAAAGAG TCTTGCCTTC TGTTTCTGAT GATTGTGAAA 74999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTGGAAG GCGCCAGACG CAAGAAAGAG TCTTGCCTTC TGTTTCTGAT GATTGTGAAA 183 CCAAAAACAG TCAGGTCTAA CCCCCCACCC CCCAACAAAC AAAGATAAAA CTTTTTTTTT 75059 |||||||||| |||| CCAAAAACAG TCAG...... .......... .......... .......... .......... 197 TTTTGTCATT GTTATAGTTA TTATTGCTGT TTTTTTAAAT ATGGATGATG TTTTATGAGC 75119 .......... .......... .......... .......... .......... .......... 197 AGAAGGAGGA GATGATGGGA GAGTTTAACA AAGCACAAGT AGCTATCCAG TGAGTTTCAG 75179 |||||||| |||||||||| |||||||||| |||||||||| ||||||||| ..AAGGAGGA GATGATGGGA GAGTTTAACA AAGCACAAGT AGCTATCCA. .......... 244 AGTTTTTCAT GTGATTACCT TAGACTTTAT CTTTTTTGTA CTTAACATGA CAACATATGT 75239 .......... .......... .......... .......... .......... .......... 244 TACACCACAT AAGAAATATG TTAATAATTT TTGTTTGTTT GTGAGCTCGA CGTTGTTTTC 75299 .......... .......... .......... .......... .......... .......... 244 ACAAATTTAT GGTAAAAAAG AGAAGTAGAG AGGAGGTGTT GTTCAAAACT TATGATGTTT 75359 .......... .......... .......... .......... .......... .......... 244 TACTTAAATC TGTTCTTGAT GTTCCTTCTC TTTATTGGAG CATTGAACAG ATCGTTGGAT 75419 |||||||||| .......... .......... .......... .......... .......... ATCGTTGGAT 254 GATTCAATTG CTAAGATTCA AAGTGAGCTG CCTTCAACTA AGGATCCTCT AATTCCACGG 75479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAATTG CTAAGATTCA AAGTGAGCTG CCTTCAACTA AGGATCCTCT AATTCCACGG 314 ATAACTGAAG AGGTTCCTTC CTTGAGGACA GATTCTGGAG GAAGTGGAAC GAGAAAGAAG 75539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACTGAAG AGGTTCCTTC CTTGAGGACA GATTCTGGAG GAAGTGGAAC GAGAAAGAAG 374 ACATTTATGG TTATTGGGAT AAACACGGCC TTCAGTAGTA GAAAAAGGCG CGATTCTATT 75599 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTATGG TTATTGGGAT AAACACGGCC TTCAGTAGTA GAAAAAGGCG CGATTCTATT 434 AGAGAGACTT GGATGCCTCA AGGTATTAAT TATAAGATTA TTGATGTATA TACTTCTTCG 75659 |||||||||| |||||||||| || AGAGAGACTT GGATGCCTCA AG........ .......... .......... .......... 456 GTTTTCATTT TCTTCCTCCT TTGACAACAT TTTGTGTGTT TGCGTAGGTA CAAAGCTACA 75719 ||| |||||||||| .......... .......... .......... .......... .......GTA CAAAGCTACA 469 TAGATTAGAG CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA GGTATGATCT 75779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TAGATTAGAG CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA G......... 520 GCAGTGCTCC ATATCTTCTC CATGCCAAAC ATATAGATTC TCATTCATCA ATGAGTTTCT 75839 .......... .......... .......... .......... .......... .......... 520 GCTGGAGTCT CATATTCTTT CTTGATAATA TGCTTCCTGT TCTTTGTTTT AAATATCCTT 75899 .......... .......... .......... .......... .......... .......... 520 TGTTTCACTT AAAAGTTGAA TGTATGATTA GCTTTTCAAG AGATATACGA AGGAAATTAT 75959 .......... .......... .......... .......... .......... .......... 520 CAGAAGCTTT GTTAAGAGTT AGTAATTCAC TACTAAAGAT GAAATGGAAA GATTTAAGAC 76019 .......... .......... .......... .......... .......... .......... 520 AAGGTATAGA GAACTGCCAG TGAGTGATTA TAGAATCATC TGTAATCTAG CATTCTGGCA 76079 .......... .......... .......... .......... .......... .......... 520 CCTTTTTCCT TTTCTATCTG GTAATGTGCA GCATGCCACT TGTGAACGAA GCTGTAAGAA 76139 .......... .......... .......... .......... .......... .......... 520 GTTCATTATG CTGCTTAAAG GGACCTGCAA GAACTTTGAA TCTTCTATAA AACACTATTT 76199 .......... .......... .......... .......... .......... .......... 520 GTCTTCATAT TTCTTAGAAC AAAATACTAA AGGTATTTAG AGTTGGTATT CTAACTAAAT 76259 .......... .......... .......... .......... .......... .......... 520 TGGAGGGAGC AGCAACTCGG AAGTACTTAC TTCAGTCCCA TCACTGAAAG ACGTGACTTT 76319 .......... .......... .......... .......... .......... .......... 520 CGGACTGGGA ATGCCATTTG TCGCATAAGT TATGATGATC CATGCTAATT TTCCTATTGT 76379 .......... .......... .......... .......... .......... .......... 520 AGCTTCAAAA TTATCAAATT AAAGGATATT AGCTTTTGTT GAGGATGTAG ATTTGAATCA 76439 .......... .......... .......... .......... .......... .......... 520 ATGACATTCA ACGCTTCAAT TTACTTCTGT CTTTAGAAAT GTCAAAGACG TGCAAATATC 76499 .......... .......... .......... .......... .......... .......... 520 TTGCCATGAG CAGTGTGATG TGCCTCTTAG TTGCTTAGTT CTTACTTGTG AACACTATTC 76559 .......... .......... .......... .......... .......... .......... 520 CATCGATCAA TTTAGTTGGA ACTGAATTAC GCTGTTATTG CATTTGTACT TATATTGCAA 76619 .......... .......... .......... .......... .......... .......... 520 CTGTAAAAGG CAAAGTAATA ACATCCTTTA TGAGTTTCAT GTTTGATGGC TTCTATACTT 76679 .......... .......... .......... .......... .......... .......... 520 TTCAATCTTG GGTAGATATA TCACAAGCCC TGGAGTATGG CTTTAACTTG ATGCCCAACA 76739 .......... .......... .......... .......... .......... .......... 520 TGATAAGAAT AAGTGCAGGA TAAGTGTTTT CTTTTGTCTT CTTTTTTGTT TCTTTTAATT 76799 .......... .......... .......... .......... .......... .......... 520 GAAATTTTAA ACAGCAGCAT GAAAGGTTAC TGTTTATCAG AGTATGAAAG GTTTTTTCTA 76859 .......... .......... .......... .......... .......... .......... 520 GGGCTAAATG GTGCATTTGG ATATAAATGT GGGAGATTGG TTCTCTTGTG GAAATTGTAT 76919 .......... .......... .......... .......... .......... .......... 520 CTTCCATGAT ACTAAGTCAT AGATAAGCCA TGAGAGGTTC AGACACAGTA TGTTGCACAT 76979 .......... .......... .......... .......... .......... .......... 520 TTTCTCACCT ATGATAATCT GCCAAATGCT TTTTGCTATC CTTCTGGAGG CAGTTTACAA 77039 .......... .......... .......... .......... .......... .......... 520 CTTCCTAATT TTCGAGGTGT CTGTAAATTG AGTGATAATT ACATTTCTGC TTAAGGGATA 77099 .......... .......... .......... .......... .......... .......... 520 AGCTCAGTCA CCAAAAGTTT CCATCTTTTC TTTCTGTTCA CTTTGTTGTG TTCAGATCAT 77159 .......... .......... .......... .......... .......... .......... 520 GTTATTGAAT TTAATCCCGA AGAAGTTTGT ACTAAGTTCA AAAATAGAAG TTCAAGTTAT 77219 .......... .......... .......... .......... .......... .......... 520 TACATCACAT TAGGTTCAAA CAAAAAGACG AGTAGAACCA TCTAAACTGA TGAAAGTTAT 77279 .......... .......... .......... .......... .......... .......... 520 TGGATTGCCC AACAAACTGG ATCTTTGATC ACTAGTTCTC AATAAGGATA CAGCCAGGAA 77339 .......... .......... .......... .......... .......... .......... 520 ATTCTATGTT TGAGGTTTAC AACATACTTA AACGAGGAAA ATGTTTCCTA TTCTTTCACT 77399 .......... .......... .......... .......... .......... .......... 520 TCCTCTCTTT ATTTTTTGAT TGTTGTTTTG TTGAGCCTAC ACCAATATAA TTATCTGAAA 77459 .......... .......... .......... .......... .......... .......... 520 TGTCGTAGGC TGTGCTCTAA AAGTTCTTAT ACTCCTTAAT ACAGCGCGAT ATCGAATAGC 77519 |||||| |||||||||| .......... .......... .......... .......... ....CGCGAT ATCGAATAGC 536 ATTTTAGATC GAGCCATTGA TAGTGAAGAT GCTCAGCATA ATGACATTCT TC 77571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ATTTTAGATC GAGCCATTGA TAGTGAAGAT GCTCAGCATA ATGACATTCT TC 588 hqPGS_C08HBa0037O11.1+_SGN-E206245+ (74580 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77571) ******************************************************************************** EST sequence 49 +strand 492 n (File: SGN-E289541+) 1 AATTTTTAGC TTTGCTCTTG GTATGCCTTT CTCTAACAGA GTTTGGACTC CTCCAGAATC 61 AGATGGAAGG AACATATTTG GAAGGCGCCA GACGCAAGAA AGAGTCTTGC CTTCTGTTTC 121 TGATGATTGT GAAACCAAAA ACAGTCAGAA GGAGGAGATG ATGGGAGAGT TTAACAAAGC 181 ACAAGTAGCT ATCCAATCGT TGGATGATTC AATTGCTAAG ATTCAAAGTG AGCTGCCTTC 241 AACTAAGGAT CCTCTAATTC CACGGATAAC TGAAGAGGTT CCTTCCTTGA GGACAGATTC 301 TGGAGGAAGT GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA CGGCCTTCAG 361 TAGTAGAAAA AGGCGCGATT CTATTAGAGA GACTTGGATG CCTCAAGGTA CAAAGCTACA 421 TAGATTAGAG CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA GCGCGATATC 481 GAATAGCATT TT Predicted gene structure (within gDNA segment 73933 to 76590): Exon 1 74630 74667 ( 38 n); cDNA 2 39 ( 38 n); score: 0.974 Intron 1 74668 74904 ( 237 n); Pd: 0.815 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 74905 75013 ( 109 n); cDNA 40 148 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 75122 75168 ( 47 n); cDNA 149 195 ( 47 n); score: 1.000 Intron 3 75169 75409 ( 241 n); Pd: 0.994 (s: 1.00), Pa: 0.925 (s: 1.00) Exon 4 75410 75621 ( 212 n); cDNA 196 407 ( 212 n); score: 1.000 Intron 4 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 75707 75770 ( 64 n); cDNA 408 471 ( 64 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E289541+ 1.000 470 0.955 C PGS_C08HBa0037O11.1+_SGN-E289541+ (74630 74667,74905 75013,75122 75168,75410 75621,75707 75770) Alignment (genomic DNA sequence = upper lines): ATTTTTAGCT TTGCTCTTGG TATGCTTTTC TCTAACAGGT AAAAGGGTCA TGCAAAAAGT 74689 |||||||||| |||||||||| ||||| |||| |||||||| ATTTTTAGCT TTGCTCTTGG TATGCCTTTC TCTAACAG.. .......... .......... 39 GTTTTTTTTT TTGGTTATGG GGTTTGAATT TTTCATGGGG TTTCAATAAA AAAGCTCTCT 74749 .......... .......... .......... .......... .......... .......... 39 TTTTTCATCT ATTTGTTCTT CAGAGATTTG GTTCGTGGGT TTTTTTCAAG AAATAGGAAA 74809 .......... .......... .......... .......... .......... .......... 39 AAGATGTTTG TTTTTTTTGC TGAAAAGATT TGAATTTTAT TGGCTATTTT TTGTGGATTT 74869 .......... .......... .......... .......... .......... .......... 39 TCATTTCTTG ATTTTTTGTT TTGTTGTATA ATTAGAGTTT GGACTCCTCC AGAATCAGAT 74929 ||||| |||||||||| |||||||||| .......... .......... .......... .....AGTTT GGACTCCTCC AGAATCAGAT 64 GGAAGGAACA TATTTGGAAG GCGCCAGACG CAAGAAAGAG TCTTGCCTTC TGTTTCTGAT 74989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGGAACA TATTTGGAAG GCGCCAGACG CAAGAAAGAG TCTTGCCTTC TGTTTCTGAT 124 GATTGTGAAA CCAAAAACAG TCAGGTCTAA CCCCCCACCC CCCAACAAAC AAAGATAAAA 75049 |||||||||| |||||||||| |||| GATTGTGAAA CCAAAAACAG TCAG...... .......... .......... .......... 148 CTTTTTTTTT TTTTGTCATT GTTATAGTTA TTATTGCTGT TTTTTTAAAT ATGGATGATG 75109 .......... .......... .......... .......... .......... .......... 148 TTTTATGAGC AGAAGGAGGA GATGATGGGA GAGTTTAACA AAGCACAAGT AGCTATCCAG 75169 |||||||| |||||||||| |||||||||| |||||||||| ||||||||| .......... ..AAGGAGGA GATGATGGGA GAGTTTAACA AAGCACAAGT AGCTATCCA. 195 TGAGTTTCAG AGTTTTTCAT GTGATTACCT TAGACTTTAT CTTTTTTGTA CTTAACATGA 75229 .......... .......... .......... .......... .......... .......... 195 CAACATATGT TACACCACAT AAGAAATATG TTAATAATTT TTGTTTGTTT GTGAGCTCGA 75289 .......... .......... .......... .......... .......... .......... 195 CGTTGTTTTC ACAAATTTAT GGTAAAAAAG AGAAGTAGAG AGGAGGTGTT GTTCAAAACT 75349 .......... .......... .......... .......... .......... .......... 195 TATGATGTTT TACTTAAATC TGTTCTTGAT GTTCCTTCTC TTTATTGGAG CATTGAACAG 75409 .......... .......... .......... .......... .......... .......... 195 ATCGTTGGAT GATTCAATTG CTAAGATTCA AAGTGAGCTG CCTTCAACTA AGGATCCTCT 75469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTTGGAT GATTCAATTG CTAAGATTCA AAGTGAGCTG CCTTCAACTA AGGATCCTCT 255 AATTCCACGG ATAACTGAAG AGGTTCCTTC CTTGAGGACA GATTCTGGAG GAAGTGGAAC 75529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCCACGG ATAACTGAAG AGGTTCCTTC CTTGAGGACA GATTCTGGAG GAAGTGGAAC 315 GAGAAAGAAG ACATTTATGG TTATTGGGAT AAACACGGCC TTCAGTAGTA GAAAAAGGCG 75589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAGAAG ACATTTATGG TTATTGGGAT AAACACGGCC TTCAGTAGTA GAAAAAGGCG 375 CGATTCTATT AGAGAGACTT GGATGCCTCA AGGTATTAAT TATAAGATTA TTGATGTATA 75649 |||||||||| |||||||||| |||||||||| || CGATTCTATT AGAGAGACTT GGATGCCTCA AG........ .......... .......... 407 TACTTCTTCG GTTTTCATTT TCTTCCTCCT TTGACAACAT TTTGTGTGTT TGCGTAGGTA 75709 ||| .......... .......... .......... .......... .......... .......GTA 410 CAAAGCTACA TAGATTAGAG CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA 75769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGCTACA TAGATTAGAG CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA 470 G 75770 | G 471 hqPGS_C08HBa0037O11.1+_SGN-E289541+ (74630 74667,74905 75013,75122 75168,75410 75621,75707 75770) ******************************************************************************** EST sequence 83 +strand 497 n (File: SGN-E278676+) 1 TTTGGACTCC TCCAGAATCA GATGGAAGGA ACATATTTGG AAGGCGCCAG ACGCAAGAAA 61 GAGTCTTGCC TTCTGTTTCT GATGATTGTG AAACCAAAAA CAGTCAGAAG GAGGAGATGA 121 TGGGAGAGTT TAACAAAGCA CAAGTAGCTA TCCAATCGTT GGATGATTCA ATTGCTAAGA 181 TTCAAAGTGA GCTGCCTTCA ACTAAGGATC CTCTAATTCC ACGGATAACT GAAGAGGTTC 241 CTTCCTTGAG GACAGATTCT GGAGGAAGTG GAACGAGAAA GAAGACATTT ATGGTTATTG 301 GGATAAACAC GGCCTTCAGT AGTAGAAAAA GGCGCGATTC TATTAGAGAG ACTTGGATGC 361 CTCAAGGTAC AAAGCTACAT AGATTAGAGC AAGAAAAGGG GATAATTGTG CGTTTCATGA 421 TAGGCCACAG CGCGATATCG AATAGCATTT TAGATCGAGC CATTGATAGT GAAGATGCTC 481 AGCATAATGA CATTCTT Predicted gene structure (within gDNA segment 74307 to 78180): Exon 1 74907 75013 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 75014 75121 ( 108 n); Pd: 0.959 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 75122 75168 ( 47 n); cDNA 108 154 ( 47 n); score: 1.000 Intron 2 75169 75409 ( 241 n); Pd: 0.994 (s: 1.00), Pa: 0.925 (s: 1.00) Exon 3 75410 75621 ( 212 n); cDNA 155 366 ( 212 n); score: 1.000 Intron 3 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 75707 75770 ( 64 n); cDNA 367 430 ( 64 n); score: 1.000 Intron 4 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 5 77504 77570 ( 67 n); cDNA 431 497 ( 67 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E278676+ 1.000 497 1.000 C PGS_C08HBa0037O11.1+_SGN-E278676+ (74907 75013,75122 75168,75410 75621,75707 75770,77504 77570) Alignment (genomic DNA sequence = upper lines): TTTGGACTCC TCCAGAATCA GATGGAAGGA ACATATTTGG AAGGCGCCAG ACGCAAGAAA 74966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGACTCC TCCAGAATCA GATGGAAGGA ACATATTTGG AAGGCGCCAG ACGCAAGAAA 60 GAGTCTTGCC TTCTGTTTCT GATGATTGTG AAACCAAAAA CAGTCAGGTC TAACCCCCCA 75026 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAGTCTTGCC TTCTGTTTCT GATGATTGTG AAACCAAAAA CAGTCAG... .......... 107 CCCCCCAACA AACAAAGATA AAACTTTTTT TTTTTTTGTC ATTGTTATAG TTATTATTGC 75086 .......... .......... .......... .......... .......... .......... 107 TGTTTTTTTA AATATGGATG ATGTTTTATG AGCAGAAGGA GGAGATGATG GGAGAGTTTA 75146 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAGGA GGAGATGATG GGAGAGTTTA 132 ACAAAGCACA AGTAGCTATC CAGTGAGTTT CAGAGTTTTT CATGTGATTA CCTTAGACTT 75206 |||||||||| |||||||||| || ACAAAGCACA AGTAGCTATC CA........ .......... .......... .......... 154 TATCTTTTTT GTACTTAACA TGACAACATA TGTTACACCA CATAAGAAAT ATGTTAATAA 75266 .......... .......... .......... .......... .......... .......... 154 TTTTTGTTTG TTTGTGAGCT CGACGTTGTT TTCACAAATT TATGGTAAAA AAGAGAAGTA 75326 .......... .......... .......... .......... .......... .......... 154 GAGAGGAGGT GTTGTTCAAA ACTTATGATG TTTTACTTAA ATCTGTTCTT GATGTTCCTT 75386 .......... .......... .......... .......... .......... .......... 154 CTCTTTATTG GAGCATTGAA CAGATCGTTG GATGATTCAA TTGCTAAGAT TCAAAGTGAG 75446 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATCGTTG GATGATTCAA TTGCTAAGAT TCAAAGTGAG 191 CTGCCTTCAA CTAAGGATCC TCTAATTCCA CGGATAACTG AAGAGGTTCC TTCCTTGAGG 75506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCTTCAA CTAAGGATCC TCTAATTCCA CGGATAACTG AAGAGGTTCC TTCCTTGAGG 251 ACAGATTCTG GAGGAAGTGG AACGAGAAAG AAGACATTTA TGGTTATTGG GATAAACACG 75566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGATTCTG GAGGAAGTGG AACGAGAAAG AAGACATTTA TGGTTATTGG GATAAACACG 311 GCCTTCAGTA GTAGAAAAAG GCGCGATTCT ATTAGAGAGA CTTGGATGCC TCAAGGTATT 75626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCCTTCAGTA GTAGAAAAAG GCGCGATTCT ATTAGAGAGA CTTGGATGCC TCAAG..... 366 AATTATAAGA TTATTGATGT ATATACTTCT TCGGTTTTCA TTTTCTTCCT CCTTTGACAA 75686 .......... .......... .......... .......... .......... .......... 366 CATTTTGTGT GTTTGCGTAG GTACAAAGCT ACATAGATTA GAGCAAGAAA AGGGGATAAT 75746 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTACAAAGCT ACATAGATTA GAGCAAGAAA AGGGGATAAT 406 TGTGCGTTTC ATGATAGGCC ACAGGTATGA TCTGCAGTGC TCCATATCTT CTCCATGCCA 75806 |||||||||| |||||||||| |||| TGTGCGTTTC ATGATAGGCC ACAG...... .......... .......... .......... 430 AACATATAGA TTCTCATTCA TCAATGAGTT TCTGCTGGAG TCTCATATTC TTTCTTGATA 75866 .......... .......... .......... .......... .......... .......... 430 ATATGCTTCC TGTTCTTTGT TTTAAATATC CTTTGTTTCA CTTAAAAGTT GAATGTATGA 75926 .......... .......... .......... .......... .......... .......... 430 TTAGCTTTTC AAGAGATATA CGAAGGAAAT TATCAGAAGC TTTGTTAAGA GTTAGTAATT 75986 .......... .......... .......... .......... .......... .......... 430 CACTACTAAA GATGAAATGG AAAGATTTAA GACAAGGTAT AGAGAACTGC CAGTGAGTGA 76046 .......... .......... .......... .......... .......... .......... 430 TTATAGAATC ATCTGTAATC TAGCATTCTG GCACCTTTTT CCTTTTCTAT CTGGTAATGT 76106 .......... .......... .......... .......... .......... .......... 430 GCAGCATGCC ACTTGTGAAC GAAGCTGTAA GAAGTTCATT ATGCTGCTTA AAGGGACCTG 76166 .......... .......... .......... .......... .......... .......... 430 CAAGAACTTT GAATCTTCTA TAAAACACTA TTTGTCTTCA TATTTCTTAG AACAAAATAC 76226 .......... .......... .......... .......... .......... .......... 430 TAAAGGTATT TAGAGTTGGT ATTCTAACTA AATTGGAGGG AGCAGCAACT CGGAAGTACT 76286 .......... .......... .......... .......... .......... .......... 430 TACTTCAGTC CCATCACTGA AAGACGTGAC TTTCGGACTG GGAATGCCAT TTGTCGCATA 76346 .......... .......... .......... .......... .......... .......... 430 AGTTATGATG ATCCATGCTA ATTTTCCTAT TGTAGCTTCA AAATTATCAA ATTAAAGGAT 76406 .......... .......... .......... .......... .......... .......... 430 ATTAGCTTTT GTTGAGGATG TAGATTTGAA TCAATGACAT TCAACGCTTC AATTTACTTC 76466 .......... .......... .......... .......... .......... .......... 430 TGTCTTTAGA AATGTCAAAG ACGTGCAAAT ATCTTGCCAT GAGCAGTGTG ATGTGCCTCT 76526 .......... .......... .......... .......... .......... .......... 430 TAGTTGCTTA GTTCTTACTT GTGAACACTA TTCCATCGAT CAATTTAGTT GGAACTGAAT 76586 .......... .......... .......... .......... .......... .......... 430 TACGCTGTTA TTGCATTTGT ACTTATATTG CAACTGTAAA AGGCAAAGTA ATAACATCCT 76646 .......... .......... .......... .......... .......... .......... 430 TTATGAGTTT CATGTTTGAT GGCTTCTATA CTTTTCAATC TTGGGTAGAT ATATCACAAG 76706 .......... .......... .......... .......... .......... .......... 430 CCCTGGAGTA TGGCTTTAAC TTGATGCCCA ACATGATAAG AATAAGTGCA GGATAAGTGT 76766 .......... .......... .......... .......... .......... .......... 430 TTTCTTTTGT CTTCTTTTTT GTTTCTTTTA ATTGAAATTT TAAACAGCAG CATGAAAGGT 76826 .......... .......... .......... .......... .......... .......... 430 TACTGTTTAT CAGAGTATGA AAGGTTTTTT CTAGGGCTAA ATGGTGCATT TGGATATAAA 76886 .......... .......... .......... .......... .......... .......... 430 TGTGGGAGAT TGGTTCTCTT GTGGAAATTG TATCTTCCAT GATACTAAGT CATAGATAAG 76946 .......... .......... .......... .......... .......... .......... 430 CCATGAGAGG TTCAGACACA GTATGTTGCA CATTTTCTCA CCTATGATAA TCTGCCAAAT 77006 .......... .......... .......... .......... .......... .......... 430 GCTTTTTGCT ATCCTTCTGG AGGCAGTTTA CAACTTCCTA ATTTTCGAGG TGTCTGTAAA 77066 .......... .......... .......... .......... .......... .......... 430 TTGAGTGATA ATTACATTTC TGCTTAAGGG ATAAGCTCAG TCACCAAAAG TTTCCATCTT 77126 .......... .......... .......... .......... .......... .......... 430 TTCTTTCTGT TCACTTTGTT GTGTTCAGAT CATGTTATTG AATTTAATCC CGAAGAAGTT 77186 .......... .......... .......... .......... .......... .......... 430 TGTACTAAGT TCAAAAATAG AAGTTCAAGT TATTACATCA CATTAGGTTC AAACAAAAAG 77246 .......... .......... .......... .......... .......... .......... 430 ACGAGTAGAA CCATCTAAAC TGATGAAAGT TATTGGATTG CCCAACAAAC TGGATCTTTG 77306 .......... .......... .......... .......... .......... .......... 430 ATCACTAGTT CTCAATAAGG ATACAGCCAG GAAATTCTAT GTTTGAGGTT TACAACATAC 77366 .......... .......... .......... .......... .......... .......... 430 TTAAACGAGG AAAATGTTTC CTATTCTTTC ACTTCCTCTC TTTATTTTTT GATTGTTGTT 77426 .......... .......... .......... .......... .......... .......... 430 TTGTTGAGCC TACACCAATA TAATTATCTG AAATGTCGTA GGCTGTGCTC TAAAAGTTCT 77486 .......... .......... .......... .......... .......... .......... 430 TATACTCCTT AATACAGCGC GATATCGAAT AGCATTTTAG ATCGAGCCAT TGATAGTGAA 77546 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......CGC GATATCGAAT AGCATTTTAG ATCGAGCCAT TGATAGTGAA 473 GATGCTCAGC ATAATGACAT TCTT 77570 |||||||||| |||||||||| |||| GATGCTCAGC ATAATGACAT TCTT 497 hqPGS_C08HBa0037O11.1+_SGN-E278676+ (74907 75013,75122 75168,75410 75621,75707 75770,77504 77570) ******************************************************************************** EST sequence 1 +strand 810 n (File: SGN-E262506+) 1 TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA 61 CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 121 GCGATTCTAT TAGAGAGACT TGGATGCCTC AAGGTACAAA GCTACATAGA TTAGAGCAAG 181 AAAAGGGGAT AATTGTGCGT TTCATGATAG GCCACAGCGC GATATCGAAT AGCATTTTAG 241 ATCGAGCCAT TGATAGTGAA GATGCTCAGC ATAATGACAT TCTTCGACTT GATCACGTAG 301 AAGGCTATCA TGAGTTAACT GCAAAAACGA AAGCTTTCTT CTCCCTTGCA GTTGCGAAAT 361 GGGATGCTGA GTTCTATGTG AAGATTGATG ATGATGTTCA TGTCAATTTA GGTACACTAG 421 CTGCAACTCT TGCCAGGCAC AGGTTGAAAC CCAGGGTGTA TATAGGATGC ATGAAATCTG 481 GACCAGTTCT TTATCAAAAG AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG 541 AGACGGGGAA TAAGTACTTC CGACATGCAA CTGGACAGAT ATACCCATCT TCCNAAAGAG 601 TTGGCAACAT ATGTTGCCAA CAACAGACCT ATTCTGCATA AGTATGCTAA TGAAGATGTG 661 TCACTCGGGG GCATGGTTGT TTTGGTCTAG AAGTTGAGCA TATTGATGAT CGGNAACCTG 721 TGTTGTGGAA CTCCGCCTGA ATGCGAATGG AAAGCACAGC AGGGTAATGT TTTGTGTGGC 781 ATCATTTGAT TGGAGCTGCA GTGGAATCTG Predicted gene structure (within gDNA segment 74869 to 79672): Exon 1 75469 75621 ( 153 n); cDNA 1 153 ( 153 n); score: 1.000 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75707 75770 ( 64 n); cDNA 154 217 ( 64 n); score: 1.000 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 77504 77576 ( 73 n); cDNA 218 290 ( 73 n); score: 1.000 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 77657 77777 ( 121 n); cDNA 291 411 ( 121 n); score: 1.000 Intron 4 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 77889 77976 ( 88 n); cDNA 412 499 ( 88 n); score: 1.000 Intron 5 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 78085 78210 ( 126 n); cDNA 500 626 ( 127 n); score: 0.944 Intron 6 78211 78796 ( 586 n); Pd: 0.999 (s: 0.85), Pa: 0.963 (s: 0.95) Exon 7 78797 78906 ( 110 n); cDNA 627 739 ( 113 n); score: 0.923 Intron 7 78907 78992 ( 86 n); Pd: 0.991 (s: 0.95), Pa: 0.511 (s: 0.87) Exon 8 78993 79062 ( 70 n); cDNA 740 810 ( 71 n); score: 0.907 MATCH C08HBa0037O11.1+ SGN-E262506+ 0.973 805 0.994 C PGS_C08HBa0037O11.1+_SGN-E262506+ (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79062) Alignment (genomic DNA sequence = upper lines): TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA 75528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA 60 CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 75588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 120 GCGATTCTAT TAGAGAGACT TGGATGCCTC AAGGTATTAA TTATAAGATT ATTGATGTAT 75648 |||||||||| |||||||||| |||||||||| ||| GCGATTCTAT TAGAGAGACT TGGATGCCTC AAG....... .......... .......... 153 ATACTTCTTC GGTTTTCATT TTCTTCCTCC TTTGACAACA TTTTGTGTGT TTGCGTAGGT 75708 || .......... .......... .......... .......... .......... ........GT 155 ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 75768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 215 AGGTATGATC TGCAGTGCTC CATATCTTCT CCATGCCAAA CATATAGATT CTCATTCATC 75828 || AG........ .......... .......... .......... .......... .......... 217 AATGAGTTTC TGCTGGAGTC TCATATTCTT TCTTGATAAT ATGCTTCCTG TTCTTTGTTT 75888 .......... .......... .......... .......... .......... .......... 217 TAAATATCCT TTGTTTCACT TAAAAGTTGA ATGTATGATT AGCTTTTCAA GAGATATACG 75948 .......... .......... .......... .......... .......... .......... 217 AAGGAAATTA TCAGAAGCTT TGTTAAGAGT TAGTAATTCA CTACTAAAGA TGAAATGGAA 76008 .......... .......... .......... .......... .......... .......... 217 AGATTTAAGA CAAGGTATAG AGAACTGCCA GTGAGTGATT ATAGAATCAT CTGTAATCTA 76068 .......... .......... .......... .......... .......... .......... 217 GCATTCTGGC ACCTTTTTCC TTTTCTATCT GGTAATGTGC AGCATGCCAC TTGTGAACGA 76128 .......... .......... .......... .......... .......... .......... 217 AGCTGTAAGA AGTTCATTAT GCTGCTTAAA GGGACCTGCA AGAACTTTGA ATCTTCTATA 76188 .......... .......... .......... .......... .......... .......... 217 AAACACTATT TGTCTTCATA TTTCTTAGAA CAAAATACTA AAGGTATTTA GAGTTGGTAT 76248 .......... .......... .......... .......... .......... .......... 217 TCTAACTAAA TTGGAGGGAG CAGCAACTCG GAAGTACTTA CTTCAGTCCC ATCACTGAAA 76308 .......... .......... .......... .......... .......... .......... 217 GACGTGACTT TCGGACTGGG AATGCCATTT GTCGCATAAG TTATGATGAT CCATGCTAAT 76368 .......... .......... .......... .......... .......... .......... 217 TTTCCTATTG TAGCTTCAAA ATTATCAAAT TAAAGGATAT TAGCTTTTGT TGAGGATGTA 76428 .......... .......... .......... .......... .......... .......... 217 GATTTGAATC AATGACATTC AACGCTTCAA TTTACTTCTG TCTTTAGAAA TGTCAAAGAC 76488 .......... .......... .......... .......... .......... .......... 217 GTGCAAATAT CTTGCCATGA GCAGTGTGAT GTGCCTCTTA GTTGCTTAGT TCTTACTTGT 76548 .......... .......... .......... .......... .......... .......... 217 GAACACTATT CCATCGATCA ATTTAGTTGG AACTGAATTA CGCTGTTATT GCATTTGTAC 76608 .......... .......... .......... .......... .......... .......... 217 TTATATTGCA ACTGTAAAAG GCAAAGTAAT AACATCCTTT ATGAGTTTCA TGTTTGATGG 76668 .......... .......... .......... .......... .......... .......... 217 CTTCTATACT TTTCAATCTT GGGTAGATAT ATCACAAGCC CTGGAGTATG GCTTTAACTT 76728 .......... .......... .......... .......... .......... .......... 217 GATGCCCAAC ATGATAAGAA TAAGTGCAGG ATAAGTGTTT TCTTTTGTCT TCTTTTTTGT 76788 .......... .......... .......... .......... .......... .......... 217 TTCTTTTAAT TGAAATTTTA AACAGCAGCA TGAAAGGTTA CTGTTTATCA GAGTATGAAA 76848 .......... .......... .......... .......... .......... .......... 217 GGTTTTTTCT AGGGCTAAAT GGTGCATTTG GATATAAATG TGGGAGATTG GTTCTCTTGT 76908 .......... .......... .......... .......... .......... .......... 217 GGAAATTGTA TCTTCCATGA TACTAAGTCA TAGATAAGCC ATGAGAGGTT CAGACACAGT 76968 .......... .......... .......... .......... .......... .......... 217 ATGTTGCACA TTTTCTCACC TATGATAATC TGCCAAATGC TTTTTGCTAT CCTTCTGGAG 77028 .......... .......... .......... .......... .......... .......... 217 GCAGTTTACA ACTTCCTAAT TTTCGAGGTG TCTGTAAATT GAGTGATAAT TACATTTCTG 77088 .......... .......... .......... .......... .......... .......... 217 CTTAAGGGAT AAGCTCAGTC ACCAAAAGTT TCCATCTTTT CTTTCTGTTC ACTTTGTTGT 77148 .......... .......... .......... .......... .......... .......... 217 GTTCAGATCA TGTTATTGAA TTTAATCCCG AAGAAGTTTG TACTAAGTTC AAAAATAGAA 77208 .......... .......... .......... .......... .......... .......... 217 GTTCAAGTTA TTACATCACA TTAGGTTCAA ACAAAAAGAC GAGTAGAACC ATCTAAACTG 77268 .......... .......... .......... .......... .......... .......... 217 ATGAAAGTTA TTGGATTGCC CAACAAACTG GATCTTTGAT CACTAGTTCT CAATAAGGAT 77328 .......... .......... .......... .......... .......... .......... 217 ACAGCCAGGA AATTCTATGT TTGAGGTTTA CAACATACTT AAACGAGGAA AATGTTTCCT 77388 .......... .......... .......... .......... .......... .......... 217 ATTCTTTCAC TTCCTCTCTT TATTTTTTGA TTGTTGTTTT GTTGAGCCTA CACCAATATA 77448 .......... .......... .......... .......... .......... .......... 217 ATTATCTGAA ATGTCGTAGG CTGTGCTCTA AAAGTTCTTA TACTCCTTAA TACAGCGCGA 77508 ||||| .......... .......... .......... .......... .......... .....CGCGA 222 TATCGAATAG CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC 77568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGAATAG CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC 282 TTCGACTTGT AAGTAAAAAA TGTTCTCTGA TTTGCTTCCG TCTGATTGTT TTATCTTTCT 77628 |||||||| TTCGACTT.. .......... .......... .......... .......... .......... 290 AGTTTGATCT CATTACTATA TTTTACAGGA TCACGTAGAA GGCTATCATG AGTTAACTGC 77688 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA TCACGTAGAA GGCTATCATG AGTTAACTGC 322 AAAAACGAAA GCTTTCTTCT CCCTTGCAGT TGCGAAATGG GATGCTGAGT TCTATGTGAA 77748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACGAAA GCTTTCTTCT CCCTTGCAGT TGCGAAATGG GATGCTGAGT TCTATGTGAA 382 GATTGATGAT GATGTTCATG TCAATTTAGG TACATCTCCC TTTTTTTCTT GCCATATGTA 77808 |||||||||| |||||||||| ||||||||| GATTGATGAT GATGTTCATG TCAATTTAG. .......... .......... .......... 411 CATTATAGTT CCGGACAACT GAAAGCTGAT GATTTTCACT TATTTGGAAA TTAATAGTTG 77868 .......... .......... .......... .......... .......... .......... 411 AACACACCAT GGTATTGTAG GTACACTAGC TGCAACTCTT GCCAGGCACA GGTTGAAACC 77928 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTACACTAGC TGCAACTCTT GCCAGGCACA GGTTGAAACC 451 CAGGGTGTAT ATAGGATGCA TGAAATCTGG ACCAGTTCTT TATCAAAAGT AACTTCTGTG 77988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAGGGTGTAT ATAGGATGCA TGAAATCTGG ACCAGTTCTT TATCAAAA.. .......... 499 AAGCTATTCT GGCCAGCTGA ATTAACTATA AATTTTGAAG TTCAAAATTT CAGGATTTTT 78048 .......... .......... .......... .......... .......... .......... 499 TATTTACTAG TATCTTTTCC ATTTTTTCCT TGATAGGAGT GTTAAGTACC ATGAACCTGA 78108 |||| |||||||||| |||||||||| .......... .......... .......... ......GAGT GTTAAGTACC ATGAACCTGA 523 GTTCTGGAAA TTTGGGGAGA CGGGGAATAA GTACTTCCGA CATGCAACTG GACAGATATA 78168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTGGAAA TTTGGGGAGA CGGGGAATAA GTACTTCCGA CATGCAACTG GACAGATATA 583 CGCCATC-T- CGAAAGAGTT GGCAACATAT GTTGCCAACA ACAGGTGAGA TTTTTGTTCA 78226 | ||||| | | |||||||| |||||||||| |||||||||| |||| C-CCATCTTC CNAAAGAGTT GGCAACATAT GTTGCCAACA ACAG...... .......... 626 TACTAGGCTA AATGCTCTCT TGCTGTAGCA TTCTATTTTG AACATGTTAC CTTTGTAGAA 78286 .......... .......... .......... .......... .......... .......... 626 TATGATGTAT GCTGATTGTA GTTTTGAAGT TCTTTTGCGG TTGGAATTGT TTATGCAAAT 78346 .......... .......... .......... .......... .......... .......... 626 GATAACAAGG AAACATACAC TTGAAATTGG GGAAAATGGA CATTCCTGCT CACTCACTAA 78406 .......... .......... .......... .......... .......... .......... 626 CAGCCACTCC ATCCAAAATT AGTAGATCAT TTTTTACACG CATATAAAGA TATCATAAAT 78466 .......... .......... .......... .......... .......... .......... 626 AAGAAGCTAA TTTTACTAAT TCACCTCTTA AAAAACTTTT TTGAGAATTT TACAAATAGA 78526 .......... .......... .......... .......... .......... .......... 626 TGCAAACAGT GTCAAAAAGA ATTAATTGCA AGGCTAATAT ATGAAAAAAA TTAATTAATG 78586 .......... .......... .......... .......... .......... .......... 626 ATTTCTTGAT TTAGTAAGAT GGACAACCAA TATGGGAGAA CTATTTTAAA TAAGATAATC 78646 .......... .......... .......... .......... .......... .......... 626 AACTAATATG GGATAGAAGG GTATAACAGA TTTATCTAGA TTGCGGGTTG CTCCTGTTTC 78706 .......... .......... .......... .......... .......... .......... 626 AAACTTTCAG TTCTCTAGTA TAATGCCACT AATCAGGAAG TGGATATGAA TGCTTGTCCA 78766 .......... .......... .......... .......... .......... .......... 626 TCTCATAGTG TGTACCGTGG TGATTTTCAG ACCTATTCTG CATAAGTATG CTAATGAAGA 78826 |||||||||| |||||||||| |||||||||| .......... .......... .......... ACCTATTCTG CATAAGTATG CTAATGAAGA 656 TGTGTCACTC -GGGGCATGG TTG-ATTGGT CTAGAAGTTG AGCATATTGA TGATCGG-AA 78883 |||||||||| ||||||||| ||| ||||| |||||||||| |||||||||| ||||||| || TGTGTCACTC GGGGGCATGG TTGTTTTGGT CTAGAAGTTG AGCATATTGA TGATCGGNAA 716 CCTGTGTTGT GGAACTCCGC CTGGTTAGCA CTCCCTAAAT ATTTGTCATT TATCTTAGAT 78943 |||||||||| |||||||||| ||| CCTGTGTTGT GGAACTCCGC CTG....... .......... .......... .......... 739 ATCTTAAAAT CTCAGTACCT AAAGTCTTTT AAACCCTCCG CTGTGACAGA ATGCGAATGG 79003 | |||||||||| .......... .......... .......... .......... .........A ATGCGAATGG 750 AAAGCACAAG CAGGTAATG- TTTGTGTGGC ATCATTTGAT TGGAGCTGCA GTGGAATCTG 79062 |||||||| ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCACAGC AGGGTAATGT TTTGTGTGGC ATCATTTGAT TGGAGCTGCA GTGGAATCTG 810 hqPGS_C08HBa0037O11.1+_SGN-E262506+ (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79062) ******************************************************************************** EST sequence 61 +strand 585 n (File: SGN-E256824+) 1 TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA 61 CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 121 GCGATTCTAT TAGAGAGACT TGGATGCCTC AAGGTACAAA GCTACATAGA TTAGAGCAAG 181 AAAAGGGGAT AATTGTGCGT TTCATGATAG GCCACAGCGC GATATCGAAT AGCATTTTAG 241 ATCGAGCCAT TGATAGTGAA GATGCTCAGC ATAATGACAT TCTTCGACTT GATCACGTAG 301 AAGGCTATCA TGAGTTAACT GCAAAAACGA AAGCTTTCTT CTCCCTTGCA GTTGCGAAAT 361 GGGATGCTGA GTTCTATGTG AAGATTGATG ATGATGTTCA TGTCAATTTA GGTACACTAG 421 CTGCAACTCT TGCCAGGCAC AGGTTGAAAC CCAGGGTGTA TATAGGATGC ATGAAATCTG 481 GACCAGTTCT TTATCAAAAG AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG 541 AGACGGGGAA TAAGTACTTC CGACATGCAA CTGGACAGAT ATACG Predicted gene structure (within gDNA segment 74869 to 78780): Exon 1 75469 75621 ( 153 n); cDNA 1 153 ( 153 n); score: 1.000 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75707 75770 ( 64 n); cDNA 154 217 ( 64 n); score: 1.000 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 77504 77576 ( 73 n); cDNA 218 290 ( 73 n); score: 1.000 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 77657 77777 ( 121 n); cDNA 291 411 ( 121 n); score: 1.000 Intron 4 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 77889 77976 ( 88 n); cDNA 412 499 ( 88 n); score: 1.000 Intron 5 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 78085 78170 ( 86 n); cDNA 500 585 ( 86 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E256824+ 1.000 585 1.000 C PGS_C08HBa0037O11.1+_SGN-E256824+ (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78170) Alignment (genomic DNA sequence = upper lines): TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA 75528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA 60 CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 75588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 120 GCGATTCTAT TAGAGAGACT TGGATGCCTC AAGGTATTAA TTATAAGATT ATTGATGTAT 75648 |||||||||| |||||||||| |||||||||| ||| GCGATTCTAT TAGAGAGACT TGGATGCCTC AAG....... .......... .......... 153 ATACTTCTTC GGTTTTCATT TTCTTCCTCC TTTGACAACA TTTTGTGTGT TTGCGTAGGT 75708 || .......... .......... .......... .......... .......... ........GT 155 ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 75768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 215 AGGTATGATC TGCAGTGCTC CATATCTTCT CCATGCCAAA CATATAGATT CTCATTCATC 75828 || AG........ .......... .......... .......... .......... .......... 217 AATGAGTTTC TGCTGGAGTC TCATATTCTT TCTTGATAAT ATGCTTCCTG TTCTTTGTTT 75888 .......... .......... .......... .......... .......... .......... 217 TAAATATCCT TTGTTTCACT TAAAAGTTGA ATGTATGATT AGCTTTTCAA GAGATATACG 75948 .......... .......... .......... .......... .......... .......... 217 AAGGAAATTA TCAGAAGCTT TGTTAAGAGT TAGTAATTCA CTACTAAAGA TGAAATGGAA 76008 .......... .......... .......... .......... .......... .......... 217 AGATTTAAGA CAAGGTATAG AGAACTGCCA GTGAGTGATT ATAGAATCAT CTGTAATCTA 76068 .......... .......... .......... .......... .......... .......... 217 GCATTCTGGC ACCTTTTTCC TTTTCTATCT GGTAATGTGC AGCATGCCAC TTGTGAACGA 76128 .......... .......... .......... .......... .......... .......... 217 AGCTGTAAGA AGTTCATTAT GCTGCTTAAA GGGACCTGCA AGAACTTTGA ATCTTCTATA 76188 .......... .......... .......... .......... .......... .......... 217 AAACACTATT TGTCTTCATA TTTCTTAGAA CAAAATACTA AAGGTATTTA GAGTTGGTAT 76248 .......... .......... .......... .......... .......... .......... 217 TCTAACTAAA TTGGAGGGAG CAGCAACTCG GAAGTACTTA CTTCAGTCCC ATCACTGAAA 76308 .......... .......... .......... .......... .......... .......... 217 GACGTGACTT TCGGACTGGG AATGCCATTT GTCGCATAAG TTATGATGAT CCATGCTAAT 76368 .......... .......... .......... .......... .......... .......... 217 TTTCCTATTG TAGCTTCAAA ATTATCAAAT TAAAGGATAT TAGCTTTTGT TGAGGATGTA 76428 .......... .......... .......... .......... .......... .......... 217 GATTTGAATC AATGACATTC AACGCTTCAA TTTACTTCTG TCTTTAGAAA TGTCAAAGAC 76488 .......... .......... .......... .......... .......... .......... 217 GTGCAAATAT CTTGCCATGA GCAGTGTGAT GTGCCTCTTA GTTGCTTAGT TCTTACTTGT 76548 .......... .......... .......... .......... .......... .......... 217 GAACACTATT CCATCGATCA ATTTAGTTGG AACTGAATTA CGCTGTTATT GCATTTGTAC 76608 .......... .......... .......... .......... .......... .......... 217 TTATATTGCA ACTGTAAAAG GCAAAGTAAT AACATCCTTT ATGAGTTTCA TGTTTGATGG 76668 .......... .......... .......... .......... .......... .......... 217 CTTCTATACT TTTCAATCTT GGGTAGATAT ATCACAAGCC CTGGAGTATG GCTTTAACTT 76728 .......... .......... .......... .......... .......... .......... 217 GATGCCCAAC ATGATAAGAA TAAGTGCAGG ATAAGTGTTT TCTTTTGTCT TCTTTTTTGT 76788 .......... .......... .......... .......... .......... .......... 217 TTCTTTTAAT TGAAATTTTA AACAGCAGCA TGAAAGGTTA CTGTTTATCA GAGTATGAAA 76848 .......... .......... .......... .......... .......... .......... 217 GGTTTTTTCT AGGGCTAAAT GGTGCATTTG GATATAAATG TGGGAGATTG GTTCTCTTGT 76908 .......... .......... .......... .......... .......... .......... 217 GGAAATTGTA TCTTCCATGA TACTAAGTCA TAGATAAGCC ATGAGAGGTT CAGACACAGT 76968 .......... .......... .......... .......... .......... .......... 217 ATGTTGCACA TTTTCTCACC TATGATAATC TGCCAAATGC TTTTTGCTAT CCTTCTGGAG 77028 .......... .......... .......... .......... .......... .......... 217 GCAGTTTACA ACTTCCTAAT TTTCGAGGTG TCTGTAAATT GAGTGATAAT TACATTTCTG 77088 .......... .......... .......... .......... .......... .......... 217 CTTAAGGGAT AAGCTCAGTC ACCAAAAGTT TCCATCTTTT CTTTCTGTTC ACTTTGTTGT 77148 .......... .......... .......... .......... .......... .......... 217 GTTCAGATCA TGTTATTGAA TTTAATCCCG AAGAAGTTTG TACTAAGTTC AAAAATAGAA 77208 .......... .......... .......... .......... .......... .......... 217 GTTCAAGTTA TTACATCACA TTAGGTTCAA ACAAAAAGAC GAGTAGAACC ATCTAAACTG 77268 .......... .......... .......... .......... .......... .......... 217 ATGAAAGTTA TTGGATTGCC CAACAAACTG GATCTTTGAT CACTAGTTCT CAATAAGGAT 77328 .......... .......... .......... .......... .......... .......... 217 ACAGCCAGGA AATTCTATGT TTGAGGTTTA CAACATACTT AAACGAGGAA AATGTTTCCT 77388 .......... .......... .......... .......... .......... .......... 217 ATTCTTTCAC TTCCTCTCTT TATTTTTTGA TTGTTGTTTT GTTGAGCCTA CACCAATATA 77448 .......... .......... .......... .......... .......... .......... 217 ATTATCTGAA ATGTCGTAGG CTGTGCTCTA AAAGTTCTTA TACTCCTTAA TACAGCGCGA 77508 ||||| .......... .......... .......... .......... .......... .....CGCGA 222 TATCGAATAG CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC 77568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGAATAG CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC 282 TTCGACTTGT AAGTAAAAAA TGTTCTCTGA TTTGCTTCCG TCTGATTGTT TTATCTTTCT 77628 |||||||| TTCGACTT.. .......... .......... .......... .......... .......... 290 AGTTTGATCT CATTACTATA TTTTACAGGA TCACGTAGAA GGCTATCATG AGTTAACTGC 77688 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA TCACGTAGAA GGCTATCATG AGTTAACTGC 322 AAAAACGAAA GCTTTCTTCT CCCTTGCAGT TGCGAAATGG GATGCTGAGT TCTATGTGAA 77748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACGAAA GCTTTCTTCT CCCTTGCAGT TGCGAAATGG GATGCTGAGT TCTATGTGAA 382 GATTGATGAT GATGTTCATG TCAATTTAGG TACATCTCCC TTTTTTTCTT GCCATATGTA 77808 |||||||||| |||||||||| ||||||||| GATTGATGAT GATGTTCATG TCAATTTAG. .......... .......... .......... 411 CATTATAGTT CCGGACAACT GAAAGCTGAT GATTTTCACT TATTTGGAAA TTAATAGTTG 77868 .......... .......... .......... .......... .......... .......... 411 AACACACCAT GGTATTGTAG GTACACTAGC TGCAACTCTT GCCAGGCACA GGTTGAAACC 77928 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTACACTAGC TGCAACTCTT GCCAGGCACA GGTTGAAACC 451 CAGGGTGTAT ATAGGATGCA TGAAATCTGG ACCAGTTCTT TATCAAAAGT AACTTCTGTG 77988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAGGGTGTAT ATAGGATGCA TGAAATCTGG ACCAGTTCTT TATCAAAA.. .......... 499 AAGCTATTCT GGCCAGCTGA ATTAACTATA AATTTTGAAG TTCAAAATTT CAGGATTTTT 78048 .......... .......... .......... .......... .......... .......... 499 TATTTACTAG TATCTTTTCC ATTTTTTCCT TGATAGGAGT GTTAAGTACC ATGAACCTGA 78108 |||| |||||||||| |||||||||| .......... .......... .......... ......GAGT GTTAAGTACC ATGAACCTGA 523 GTTCTGGAAA TTTGGGGAGA CGGGGAATAA GTACTTCCGA CATGCAACTG GACAGATATA 78168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTGGAAA TTTGGGGAGA CGGGGAATAA GTACTTCCGA CATGCAACTG GACAGATATA 583 CG 78170 || CG 585 hqPGS_C08HBa0037O11.1+_SGN-E256824+ (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78170) ******************************************************************************** EST sequence 42 +strand 583 n (File: SGN-E254829+) 1 TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGGAGTGGAA 61 CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 121 GCGATTCTAT TAGAGAGACT TGGATGCCTC AAGGTACAAA GCTACATAGA TTAGAGCAAG 181 AAAAGGGGAT AATTGTGCGT TTCATGATAG GCCACAGCGC GATATCGAAT AGCATTTTAG 241 ATCGAGCCAT TGATAGTGAA GATGCTCAGC ATAATGACAT TCTTCGACTT GATCACGTAG 301 AAGGCTATCA TGAGTTAACT GCAAAAACGA AAGCTTTCTT CTCCCTTGCA GTTGCGAAAT 361 GGGATGCTGA GTTCTATGTG AAGATTGATG ATGATGTTCA TGTCAATTTA GGTACACTAG 421 CTGCAACTCT TGCCAGGCAC AGGTTGAAAC CCAGGGTGTA TATAGGATGC ATGAAATCTG 481 GACCAGTTCT TTATCAAAAG AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG 541 AGACGGGGAA TAAGTACTTC CGACATGCAA CTGGACAGAT ATA Predicted gene structure (within gDNA segment 74869 to 78778): Exon 1 75469 75621 ( 153 n); cDNA 1 153 ( 153 n); score: 0.993 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75707 75770 ( 64 n); cDNA 154 217 ( 64 n); score: 1.000 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 77504 77576 ( 73 n); cDNA 218 290 ( 73 n); score: 1.000 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 77657 77777 ( 121 n); cDNA 291 411 ( 121 n); score: 1.000 Intron 4 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 77889 77976 ( 88 n); cDNA 412 499 ( 88 n); score: 1.000 Intron 5 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 78085 78168 ( 84 n); cDNA 500 583 ( 84 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E254829+ 0.998 583 1.000 C PGS_C08HBa0037O11.1+_SGN-E254829+ (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78168) Alignment (genomic DNA sequence = upper lines): TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGAAGTGGAA 75528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TAATTCCACG GATAACTGAA GAGGTTCCTT CCTTGAGGAC AGATTCTGGA GGGAGTGGAA 60 CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 75588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAAAGAA GACATTTATG GTTATTGGGA TAAACACGGC CTTCAGTAGT AGAAAAAGGC 120 GCGATTCTAT TAGAGAGACT TGGATGCCTC AAGGTATTAA TTATAAGATT ATTGATGTAT 75648 |||||||||| |||||||||| |||||||||| ||| GCGATTCTAT TAGAGAGACT TGGATGCCTC AAG....... .......... .......... 153 ATACTTCTTC GGTTTTCATT TTCTTCCTCC TTTGACAACA TTTTGTGTGT TTGCGTAGGT 75708 || .......... .......... .......... .......... .......... ........GT 155 ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 75768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGCTAC ATAGATTAGA GCAAGAAAAG GGGATAATTG TGCGTTTCAT GATAGGCCAC 215 AGGTATGATC TGCAGTGCTC CATATCTTCT CCATGCCAAA CATATAGATT CTCATTCATC 75828 || AG........ .......... .......... .......... .......... .......... 217 AATGAGTTTC TGCTGGAGTC TCATATTCTT TCTTGATAAT ATGCTTCCTG TTCTTTGTTT 75888 .......... .......... .......... .......... .......... .......... 217 TAAATATCCT TTGTTTCACT TAAAAGTTGA ATGTATGATT AGCTTTTCAA GAGATATACG 75948 .......... .......... .......... .......... .......... .......... 217 AAGGAAATTA TCAGAAGCTT TGTTAAGAGT TAGTAATTCA CTACTAAAGA TGAAATGGAA 76008 .......... .......... .......... .......... .......... .......... 217 AGATTTAAGA CAAGGTATAG AGAACTGCCA GTGAGTGATT ATAGAATCAT CTGTAATCTA 76068 .......... .......... .......... .......... .......... .......... 217 GCATTCTGGC ACCTTTTTCC TTTTCTATCT GGTAATGTGC AGCATGCCAC TTGTGAACGA 76128 .......... .......... .......... .......... .......... .......... 217 AGCTGTAAGA AGTTCATTAT GCTGCTTAAA GGGACCTGCA AGAACTTTGA ATCTTCTATA 76188 .......... .......... .......... .......... .......... .......... 217 AAACACTATT TGTCTTCATA TTTCTTAGAA CAAAATACTA AAGGTATTTA GAGTTGGTAT 76248 .......... .......... .......... .......... .......... .......... 217 TCTAACTAAA TTGGAGGGAG CAGCAACTCG GAAGTACTTA CTTCAGTCCC ATCACTGAAA 76308 .......... .......... .......... .......... .......... .......... 217 GACGTGACTT TCGGACTGGG AATGCCATTT GTCGCATAAG TTATGATGAT CCATGCTAAT 76368 .......... .......... .......... .......... .......... .......... 217 TTTCCTATTG TAGCTTCAAA ATTATCAAAT TAAAGGATAT TAGCTTTTGT TGAGGATGTA 76428 .......... .......... .......... .......... .......... .......... 217 GATTTGAATC AATGACATTC AACGCTTCAA TTTACTTCTG TCTTTAGAAA TGTCAAAGAC 76488 .......... .......... .......... .......... .......... .......... 217 GTGCAAATAT CTTGCCATGA GCAGTGTGAT GTGCCTCTTA GTTGCTTAGT TCTTACTTGT 76548 .......... .......... .......... .......... .......... .......... 217 GAACACTATT CCATCGATCA ATTTAGTTGG AACTGAATTA CGCTGTTATT GCATTTGTAC 76608 .......... .......... .......... .......... .......... .......... 217 TTATATTGCA ACTGTAAAAG GCAAAGTAAT AACATCCTTT ATGAGTTTCA TGTTTGATGG 76668 .......... .......... .......... .......... .......... .......... 217 CTTCTATACT TTTCAATCTT GGGTAGATAT ATCACAAGCC CTGGAGTATG GCTTTAACTT 76728 .......... .......... .......... .......... .......... .......... 217 GATGCCCAAC ATGATAAGAA TAAGTGCAGG ATAAGTGTTT TCTTTTGTCT TCTTTTTTGT 76788 .......... .......... .......... .......... .......... .......... 217 TTCTTTTAAT TGAAATTTTA AACAGCAGCA TGAAAGGTTA CTGTTTATCA GAGTATGAAA 76848 .......... .......... .......... .......... .......... .......... 217 GGTTTTTTCT AGGGCTAAAT GGTGCATTTG GATATAAATG TGGGAGATTG GTTCTCTTGT 76908 .......... .......... .......... .......... .......... .......... 217 GGAAATTGTA TCTTCCATGA TACTAAGTCA TAGATAAGCC ATGAGAGGTT CAGACACAGT 76968 .......... .......... .......... .......... .......... .......... 217 ATGTTGCACA TTTTCTCACC TATGATAATC TGCCAAATGC TTTTTGCTAT CCTTCTGGAG 77028 .......... .......... .......... .......... .......... .......... 217 GCAGTTTACA ACTTCCTAAT TTTCGAGGTG TCTGTAAATT GAGTGATAAT TACATTTCTG 77088 .......... .......... .......... .......... .......... .......... 217 CTTAAGGGAT AAGCTCAGTC ACCAAAAGTT TCCATCTTTT CTTTCTGTTC ACTTTGTTGT 77148 .......... .......... .......... .......... .......... .......... 217 GTTCAGATCA TGTTATTGAA TTTAATCCCG AAGAAGTTTG TACTAAGTTC AAAAATAGAA 77208 .......... .......... .......... .......... .......... .......... 217 GTTCAAGTTA TTACATCACA TTAGGTTCAA ACAAAAAGAC GAGTAGAACC ATCTAAACTG 77268 .......... .......... .......... .......... .......... .......... 217 ATGAAAGTTA TTGGATTGCC CAACAAACTG GATCTTTGAT CACTAGTTCT CAATAAGGAT 77328 .......... .......... .......... .......... .......... .......... 217 ACAGCCAGGA AATTCTATGT TTGAGGTTTA CAACATACTT AAACGAGGAA AATGTTTCCT 77388 .......... .......... .......... .......... .......... .......... 217 ATTCTTTCAC TTCCTCTCTT TATTTTTTGA TTGTTGTTTT GTTGAGCCTA CACCAATATA 77448 .......... .......... .......... .......... .......... .......... 217 ATTATCTGAA ATGTCGTAGG CTGTGCTCTA AAAGTTCTTA TACTCCTTAA TACAGCGCGA 77508 ||||| .......... .......... .......... .......... .......... .....CGCGA 222 TATCGAATAG CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC 77568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGAATAG CATTTTAGAT CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC 282 TTCGACTTGT AAGTAAAAAA TGTTCTCTGA TTTGCTTCCG TCTGATTGTT TTATCTTTCT 77628 |||||||| TTCGACTT.. .......... .......... .......... .......... .......... 290 AGTTTGATCT CATTACTATA TTTTACAGGA TCACGTAGAA GGCTATCATG AGTTAACTGC 77688 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA TCACGTAGAA GGCTATCATG AGTTAACTGC 322 AAAAACGAAA GCTTTCTTCT CCCTTGCAGT TGCGAAATGG GATGCTGAGT TCTATGTGAA 77748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACGAAA GCTTTCTTCT CCCTTGCAGT TGCGAAATGG GATGCTGAGT TCTATGTGAA 382 GATTGATGAT GATGTTCATG TCAATTTAGG TACATCTCCC TTTTTTTCTT GCCATATGTA 77808 |||||||||| |||||||||| ||||||||| GATTGATGAT GATGTTCATG TCAATTTAG. .......... .......... .......... 411 CATTATAGTT CCGGACAACT GAAAGCTGAT GATTTTCACT TATTTGGAAA TTAATAGTTG 77868 .......... .......... .......... .......... .......... .......... 411 AACACACCAT GGTATTGTAG GTACACTAGC TGCAACTCTT GCCAGGCACA GGTTGAAACC 77928 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTACACTAGC TGCAACTCTT GCCAGGCACA GGTTGAAACC 451 CAGGGTGTAT ATAGGATGCA TGAAATCTGG ACCAGTTCTT TATCAAAAGT AACTTCTGTG 77988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAGGGTGTAT ATAGGATGCA TGAAATCTGG ACCAGTTCTT TATCAAAA.. .......... 499 AAGCTATTCT GGCCAGCTGA ATTAACTATA AATTTTGAAG TTCAAAATTT CAGGATTTTT 78048 .......... .......... .......... .......... .......... .......... 499 TATTTACTAG TATCTTTTCC ATTTTTTCCT TGATAGGAGT GTTAAGTACC ATGAACCTGA 78108 |||| |||||||||| |||||||||| .......... .......... .......... ......GAGT GTTAAGTACC ATGAACCTGA 523 GTTCTGGAAA TTTGGGGAGA CGGGGAATAA GTACTTCCGA CATGCAACTG GACAGATATA 78168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTGGAAA TTTGGGGAGA CGGGGAATAA GTACTTCCGA CATGCAACTG GACAGATATA 583 hqPGS_C08HBa0037O11.1+_SGN-E254829+ (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78168) ******************************************************************************** EST sequence 12 +strand 521 n (File: SGN-E261937+) 1 ATTCCACGGA TAACTGAAGA GGTTCCTTCC TTGAGGACAG ATTCTGGAGG AAGTGGAACG 61 AGAAAGAAGA CATTTATGGT TATTGGGATA AACACGGCCT TCAGTAGTAG AAAAAGGCGC 121 GATTCTATTA GAGAGACTTG GATGCCTCAA GGTACAAAGC TACATAGATT AGAGCAAGAA 181 AAGGGGATAA TTGTGCGTTT CATGATAGGC CACAGCGCGA TATCGAATAG CATTTTAGAT 241 CGAGCCATTG ATAGTGAAGA TGCTCAGCAT AATGACATTC TTCGACTTGA TCACGTAGAA 301 GGCTATCATG AGTTAACTGC AAAAACGAAA GCTTTCTTCT CCCTTGCAGT TGCGAAATGG 361 GATGCTGAGT TCTATGTGAA GATTGATGAT GATGTTCATG TCAATTTAGG TACACTAGCT 421 GCAACTCTTG CCAGGCACAG GTTGAAACCC AGGGTGTATA TAGGATGCAT GAAATCTGGA 481 CCAGTTCTTT ATCAAAAGAG TGTTAAGTAC CATGAACCTG A Predicted gene structure (within gDNA segment 74871 to 78817): Exon 1 75471 75621 ( 151 n); cDNA 1 151 ( 151 n); score: 1.000 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75707 75770 ( 64 n); cDNA 152 215 ( 64 n); score: 1.000 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 77504 77576 ( 73 n); cDNA 216 288 ( 73 n); score: 1.000 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 77657 77777 ( 121 n); cDNA 289 409 ( 121 n); score: 1.000 Intron 4 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 77889 77976 ( 88 n); cDNA 410 497 ( 88 n); score: 1.000 Intron 5 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 0) Exon 6 78085 78108 ( 24 n); cDNA 498 521 ( 24 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E261937+ 1.000 521 1.000 C PGS_C08HBa0037O11.1+_SGN-E261937+ (75471 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78108) Alignment (genomic DNA sequence = upper lines): ATTCCACGGA TAACTGAAGA GGTTCCTTCC TTGAGGACAG ATTCTGGAGG AAGTGGAACG 75530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCACGGA TAACTGAAGA GGTTCCTTCC TTGAGGACAG ATTCTGGAGG AAGTGGAACG 60 AGAAAGAAGA CATTTATGGT TATTGGGATA AACACGGCCT TCAGTAGTAG AAAAAGGCGC 75590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGAAGA CATTTATGGT TATTGGGATA AACACGGCCT TCAGTAGTAG AAAAAGGCGC 120 GATTCTATTA GAGAGACTTG GATGCCTCAA GGTATTAATT ATAAGATTAT TGATGTATAT 75650 |||||||||| |||||||||| |||||||||| | GATTCTATTA GAGAGACTTG GATGCCTCAA G......... .......... .......... 151 ACTTCTTCGG TTTTCATTTT CTTCCTCCTT TGACAACATT TTGTGTGTTT GCGTAGGTAC 75710 |||| .......... .......... .......... .......... .......... ......GTAC 155 AAAGCTACAT AGATTAGAGC AAGAAAAGGG GATAATTGTG CGTTTCATGA TAGGCCACAG 75770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTACAT AGATTAGAGC AAGAAAAGGG GATAATTGTG CGTTTCATGA TAGGCCACAG 215 GTATGATCTG CAGTGCTCCA TATCTTCTCC ATGCCAAACA TATAGATTCT CATTCATCAA 75830 .......... .......... .......... .......... .......... .......... 215 TGAGTTTCTG CTGGAGTCTC ATATTCTTTC TTGATAATAT GCTTCCTGTT CTTTGTTTTA 75890 .......... .......... .......... .......... .......... .......... 215 AATATCCTTT GTTTCACTTA AAAGTTGAAT GTATGATTAG CTTTTCAAGA GATATACGAA 75950 .......... .......... .......... .......... .......... .......... 215 GGAAATTATC AGAAGCTTTG TTAAGAGTTA GTAATTCACT ACTAAAGATG AAATGGAAAG 76010 .......... .......... .......... .......... .......... .......... 215 ATTTAAGACA AGGTATAGAG AACTGCCAGT GAGTGATTAT AGAATCATCT GTAATCTAGC 76070 .......... .......... .......... .......... .......... .......... 215 ATTCTGGCAC CTTTTTCCTT TTCTATCTGG TAATGTGCAG CATGCCACTT GTGAACGAAG 76130 .......... .......... .......... .......... .......... .......... 215 CTGTAAGAAG TTCATTATGC TGCTTAAAGG GACCTGCAAG AACTTTGAAT CTTCTATAAA 76190 .......... .......... .......... .......... .......... .......... 215 ACACTATTTG TCTTCATATT TCTTAGAACA AAATACTAAA GGTATTTAGA GTTGGTATTC 76250 .......... .......... .......... .......... .......... .......... 215 TAACTAAATT GGAGGGAGCA GCAACTCGGA AGTACTTACT TCAGTCCCAT CACTGAAAGA 76310 .......... .......... .......... .......... .......... .......... 215 CGTGACTTTC GGACTGGGAA TGCCATTTGT CGCATAAGTT ATGATGATCC ATGCTAATTT 76370 .......... .......... .......... .......... .......... .......... 215 TCCTATTGTA GCTTCAAAAT TATCAAATTA AAGGATATTA GCTTTTGTTG AGGATGTAGA 76430 .......... .......... .......... .......... .......... .......... 215 TTTGAATCAA TGACATTCAA CGCTTCAATT TACTTCTGTC TTTAGAAATG TCAAAGACGT 76490 .......... .......... .......... .......... .......... .......... 215 GCAAATATCT TGCCATGAGC AGTGTGATGT GCCTCTTAGT TGCTTAGTTC TTACTTGTGA 76550 .......... .......... .......... .......... .......... .......... 215 ACACTATTCC ATCGATCAAT TTAGTTGGAA CTGAATTACG CTGTTATTGC ATTTGTACTT 76610 .......... .......... .......... .......... .......... .......... 215 ATATTGCAAC TGTAAAAGGC AAAGTAATAA CATCCTTTAT GAGTTTCATG TTTGATGGCT 76670 .......... .......... .......... .......... .......... .......... 215 TCTATACTTT TCAATCTTGG GTAGATATAT CACAAGCCCT GGAGTATGGC TTTAACTTGA 76730 .......... .......... .......... .......... .......... .......... 215 TGCCCAACAT GATAAGAATA AGTGCAGGAT AAGTGTTTTC TTTTGTCTTC TTTTTTGTTT 76790 .......... .......... .......... .......... .......... .......... 215 CTTTTAATTG AAATTTTAAA CAGCAGCATG AAAGGTTACT GTTTATCAGA GTATGAAAGG 76850 .......... .......... .......... .......... .......... .......... 215 TTTTTTCTAG GGCTAAATGG TGCATTTGGA TATAAATGTG GGAGATTGGT TCTCTTGTGG 76910 .......... .......... .......... .......... .......... .......... 215 AAATTGTATC TTCCATGATA CTAAGTCATA GATAAGCCAT GAGAGGTTCA GACACAGTAT 76970 .......... .......... .......... .......... .......... .......... 215 GTTGCACATT TTCTCACCTA TGATAATCTG CCAAATGCTT TTTGCTATCC TTCTGGAGGC 77030 .......... .......... .......... .......... .......... .......... 215 AGTTTACAAC TTCCTAATTT TCGAGGTGTC TGTAAATTGA GTGATAATTA CATTTCTGCT 77090 .......... .......... .......... .......... .......... .......... 215 TAAGGGATAA GCTCAGTCAC CAAAAGTTTC CATCTTTTCT TTCTGTTCAC TTTGTTGTGT 77150 .......... .......... .......... .......... .......... .......... 215 TCAGATCATG TTATTGAATT TAATCCCGAA GAAGTTTGTA CTAAGTTCAA AAATAGAAGT 77210 .......... .......... .......... .......... .......... .......... 215 TCAAGTTATT ACATCACATT AGGTTCAAAC AAAAAGACGA GTAGAACCAT CTAAACTGAT 77270 .......... .......... .......... .......... .......... .......... 215 GAAAGTTATT GGATTGCCCA ACAAACTGGA TCTTTGATCA CTAGTTCTCA ATAAGGATAC 77330 .......... .......... .......... .......... .......... .......... 215 AGCCAGGAAA TTCTATGTTT GAGGTTTACA ACATACTTAA ACGAGGAAAA TGTTTCCTAT 77390 .......... .......... .......... .......... .......... .......... 215 TCTTTCACTT CCTCTCTTTA TTTTTTGATT GTTGTTTTGT TGAGCCTACA CCAATATAAT 77450 .......... .......... .......... .......... .......... .......... 215 TATCTGAAAT GTCGTAGGCT GTGCTCTAAA AGTTCTTATA CTCCTTAATA CAGCGCGATA 77510 ||||||| .......... .......... .......... .......... .......... ...CGCGATA 222 TCGAATAGCA TTTTAGATCG AGCCATTGAT AGTGAAGATG CTCAGCATAA TGACATTCTT 77570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAATAGCA TTTTAGATCG AGCCATTGAT AGTGAAGATG CTCAGCATAA TGACATTCTT 282 CGACTTGTAA GTAAAAAATG TTCTCTGATT TGCTTCCGTC TGATTGTTTT ATCTTTCTAG 77630 |||||| CGACTT.... .......... .......... .......... .......... .......... 288 TTTGATCTCA TTACTATATT TTACAGGATC ACGTAGAAGG CTATCATGAG TTAACTGCAA 77690 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GATC ACGTAGAAGG CTATCATGAG TTAACTGCAA 322 AAACGAAAGC TTTCTTCTCC CTTGCAGTTG CGAAATGGGA TGCTGAGTTC TATGTGAAGA 77750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACGAAAGC TTTCTTCTCC CTTGCAGTTG CGAAATGGGA TGCTGAGTTC TATGTGAAGA 382 TTGATGATGA TGTTCATGTC AATTTAGGTA CATCTCCCTT TTTTTCTTGC CATATGTACA 77810 |||||||||| |||||||||| ||||||| TTGATGATGA TGTTCATGTC AATTTAG... .......... .......... .......... 409 TTATAGTTCC GGACAACTGA AAGCTGATGA TTTTCACTTA TTTGGAAATT AATAGTTGAA 77870 .......... .......... .......... .......... .......... .......... 409 CACACCATGG TATTGTAGGT ACACTAGCTG CAACTCTTGC CAGGCACAGG TTGAAACCCA 77930 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT ACACTAGCTG CAACTCTTGC CAGGCACAGG TTGAAACCCA 451 GGGTGTATAT AGGATGCATG AAATCTGGAC CAGTTCTTTA TCAAAAGTAA CTTCTGTGAA 77990 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGGTGTATAT AGGATGCATG AAATCTGGAC CAGTTCTTTA TCAAAA.... .......... 497 GCTATTCTGG CCAGCTGAAT TAACTATAAA TTTTGAAGTT CAAAATTTCA GGATTTTTTA 78050 .......... .......... .......... .......... .......... .......... 497 TTTACTAGTA TCTTTTCCAT TTTTTCCTTG ATAGGAGTGT TAAGTACCAT GAACCTGA 78108 |||||| |||||||||| |||||||| .......... .......... .......... ....GAGTGT TAAGTACCAT GAACCTGA 521 hqPGS_C08HBa0037O11.1+_SGN-E261937+ (75471 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78108) ******************************************************************************** EST sequence 36 +strand 579 n (File: SGN-E264427+) 1 AGGTTCCTTC CTTGAGGACA GATTCTGGAG GAAGTGGAAC GAGAAAGAAG ACATTTATGG 61 TTATTGGGAT AAACACGGCC TTCAGTAGTA GAAAAAGGCG CGATTCTATT AGAGAGACTT 121 GGATGCCTCA AGGTACAAAG CTACATAGAT TAGAGCAAGA AAAGGGGATA ATTGTGCGTT 181 TCATGATAGG CCACAGCGCG ATATCGAATA GCATTTTAGA TCGAGCCATT GATAGTGAAG 241 ATGCTCAGCA TAATGACATT CTTCGACTTG ATCACGTAGA AGGCTATCAT GAGTTAACTG 301 CAAAAACGAA AGCTTTCTTC TCCCTTGCAG TTGCGAAATG GGATGCTGAG TTCTATGTGA 361 AGATTGATGA TGATGTTCAT GTCAATTTAG GTACACTAGC TGCAACTCTT GCCAGGCACA 421 GGTTGAAACC CAGGGTGTAT ATAGGATGCA TGAAATCTGG ACCAGTTCTT TATCAAAAGA 481 GTGTTAAGTA CCATGAACCT GAGTTCTGGA AATTTGGGGA GACGGGGAAT AAGTACTTCC 541 GACATGCAAC TGGACAGATA TACGCCATCT CGAAAGAGT Predicted gene structure (within gDNA segment 74890 to 78795): Exon 1 75490 75621 ( 132 n); cDNA 1 132 ( 132 n); score: 1.000 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75707 75770 ( 64 n); cDNA 133 196 ( 64 n); score: 1.000 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 77504 77576 ( 73 n); cDNA 197 269 ( 73 n); score: 1.000 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 77657 77777 ( 121 n); cDNA 270 390 ( 121 n); score: 1.000 Intron 4 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 77889 77976 ( 88 n); cDNA 391 478 ( 88 n); score: 1.000 Intron 5 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 78085 78185 ( 101 n); cDNA 479 579 ( 101 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E264427+ 1.000 579 1.000 C PGS_C08HBa0037O11.1+_SGN-E264427+ (75490 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78185) Alignment (genomic DNA sequence = upper lines): AGGTTCCTTC CTTGAGGACA GATTCTGGAG GAAGTGGAAC GAGAAAGAAG ACATTTATGG 75549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTCCTTC CTTGAGGACA GATTCTGGAG GAAGTGGAAC GAGAAAGAAG ACATTTATGG 60 TTATTGGGAT AAACACGGCC TTCAGTAGTA GAAAAAGGCG CGATTCTATT AGAGAGACTT 75609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGGGAT AAACACGGCC TTCAGTAGTA GAAAAAGGCG CGATTCTATT AGAGAGACTT 120 GGATGCCTCA AGGTATTAAT TATAAGATTA TTGATGTATA TACTTCTTCG GTTTTCATTT 75669 |||||||||| || GGATGCCTCA AG........ .......... .......... .......... .......... 132 TCTTCCTCCT TTGACAACAT TTTGTGTGTT TGCGTAGGTA CAAAGCTACA TAGATTAGAG 75729 ||| |||||||||| |||||||||| .......... .......... .......... .......GTA CAAAGCTACA TAGATTAGAG 155 CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA GGTATGATCT GCAGTGCTCC 75789 |||||||||| |||||||||| |||||||||| |||||||||| | CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA G......... .......... 196 ATATCTTCTC CATGCCAAAC ATATAGATTC TCATTCATCA ATGAGTTTCT GCTGGAGTCT 75849 .......... .......... .......... .......... .......... .......... 196 CATATTCTTT CTTGATAATA TGCTTCCTGT TCTTTGTTTT AAATATCCTT TGTTTCACTT 75909 .......... .......... .......... .......... .......... .......... 196 AAAAGTTGAA TGTATGATTA GCTTTTCAAG AGATATACGA AGGAAATTAT CAGAAGCTTT 75969 .......... .......... .......... .......... .......... .......... 196 GTTAAGAGTT AGTAATTCAC TACTAAAGAT GAAATGGAAA GATTTAAGAC AAGGTATAGA 76029 .......... .......... .......... .......... .......... .......... 196 GAACTGCCAG TGAGTGATTA TAGAATCATC TGTAATCTAG CATTCTGGCA CCTTTTTCCT 76089 .......... .......... .......... .......... .......... .......... 196 TTTCTATCTG GTAATGTGCA GCATGCCACT TGTGAACGAA GCTGTAAGAA GTTCATTATG 76149 .......... .......... .......... .......... .......... .......... 196 CTGCTTAAAG GGACCTGCAA GAACTTTGAA TCTTCTATAA AACACTATTT GTCTTCATAT 76209 .......... .......... .......... .......... .......... .......... 196 TTCTTAGAAC AAAATACTAA AGGTATTTAG AGTTGGTATT CTAACTAAAT TGGAGGGAGC 76269 .......... .......... .......... .......... .......... .......... 196 AGCAACTCGG AAGTACTTAC TTCAGTCCCA TCACTGAAAG ACGTGACTTT CGGACTGGGA 76329 .......... .......... .......... .......... .......... .......... 196 ATGCCATTTG TCGCATAAGT TATGATGATC CATGCTAATT TTCCTATTGT AGCTTCAAAA 76389 .......... .......... .......... .......... .......... .......... 196 TTATCAAATT AAAGGATATT AGCTTTTGTT GAGGATGTAG ATTTGAATCA ATGACATTCA 76449 .......... .......... .......... .......... .......... .......... 196 ACGCTTCAAT TTACTTCTGT CTTTAGAAAT GTCAAAGACG TGCAAATATC TTGCCATGAG 76509 .......... .......... .......... .......... .......... .......... 196 CAGTGTGATG TGCCTCTTAG TTGCTTAGTT CTTACTTGTG AACACTATTC CATCGATCAA 76569 .......... .......... .......... .......... .......... .......... 196 TTTAGTTGGA ACTGAATTAC GCTGTTATTG CATTTGTACT TATATTGCAA CTGTAAAAGG 76629 .......... .......... .......... .......... .......... .......... 196 CAAAGTAATA ACATCCTTTA TGAGTTTCAT GTTTGATGGC TTCTATACTT TTCAATCTTG 76689 .......... .......... .......... .......... .......... .......... 196 GGTAGATATA TCACAAGCCC TGGAGTATGG CTTTAACTTG ATGCCCAACA TGATAAGAAT 76749 .......... .......... .......... .......... .......... .......... 196 AAGTGCAGGA TAAGTGTTTT CTTTTGTCTT CTTTTTTGTT TCTTTTAATT GAAATTTTAA 76809 .......... .......... .......... .......... .......... .......... 196 ACAGCAGCAT GAAAGGTTAC TGTTTATCAG AGTATGAAAG GTTTTTTCTA GGGCTAAATG 76869 .......... .......... .......... .......... .......... .......... 196 GTGCATTTGG ATATAAATGT GGGAGATTGG TTCTCTTGTG GAAATTGTAT CTTCCATGAT 76929 .......... .......... .......... .......... .......... .......... 196 ACTAAGTCAT AGATAAGCCA TGAGAGGTTC AGACACAGTA TGTTGCACAT TTTCTCACCT 76989 .......... .......... .......... .......... .......... .......... 196 ATGATAATCT GCCAAATGCT TTTTGCTATC CTTCTGGAGG CAGTTTACAA CTTCCTAATT 77049 .......... .......... .......... .......... .......... .......... 196 TTCGAGGTGT CTGTAAATTG AGTGATAATT ACATTTCTGC TTAAGGGATA AGCTCAGTCA 77109 .......... .......... .......... .......... .......... .......... 196 CCAAAAGTTT CCATCTTTTC TTTCTGTTCA CTTTGTTGTG TTCAGATCAT GTTATTGAAT 77169 .......... .......... .......... .......... .......... .......... 196 TTAATCCCGA AGAAGTTTGT ACTAAGTTCA AAAATAGAAG TTCAAGTTAT TACATCACAT 77229 .......... .......... .......... .......... .......... .......... 196 TAGGTTCAAA CAAAAAGACG AGTAGAACCA TCTAAACTGA TGAAAGTTAT TGGATTGCCC 77289 .......... .......... .......... .......... .......... .......... 196 AACAAACTGG ATCTTTGATC ACTAGTTCTC AATAAGGATA CAGCCAGGAA ATTCTATGTT 77349 .......... .......... .......... .......... .......... .......... 196 TGAGGTTTAC AACATACTTA AACGAGGAAA ATGTTTCCTA TTCTTTCACT TCCTCTCTTT 77409 .......... .......... .......... .......... .......... .......... 196 ATTTTTTGAT TGTTGTTTTG TTGAGCCTAC ACCAATATAA TTATCTGAAA TGTCGTAGGC 77469 .......... .......... .......... .......... .......... .......... 196 TGTGCTCTAA AAGTTCTTAT ACTCCTTAAT ACAGCGCGAT ATCGAATAGC ATTTTAGATC 77529 |||||| |||||||||| |||||||||| .......... .......... .......... ....CGCGAT ATCGAATAGC ATTTTAGATC 222 GAGCCATTGA TAGTGAAGAT GCTCAGCATA ATGACATTCT TCGACTTGTA AGTAAAAAAT 77589 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GAGCCATTGA TAGTGAAGAT GCTCAGCATA ATGACATTCT TCGACTT... .......... 269 GTTCTCTGAT TTGCTTCCGT CTGATTGTTT TATCTTTCTA GTTTGATCTC ATTACTATAT 77649 .......... .......... .......... .......... .......... .......... 269 TTTACAGGAT CACGTAGAAG GCTATCATGA GTTAACTGCA AAAACGAAAG CTTTCTTCTC 77709 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAT CACGTAGAAG GCTATCATGA GTTAACTGCA AAAACGAAAG CTTTCTTCTC 322 CCTTGCAGTT GCGAAATGGG ATGCTGAGTT CTATGTGAAG ATTGATGATG ATGTTCATGT 77769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGCAGTT GCGAAATGGG ATGCTGAGTT CTATGTGAAG ATTGATGATG ATGTTCATGT 382 CAATTTAGGT ACATCTCCCT TTTTTTCTTG CCATATGTAC ATTATAGTTC CGGACAACTG 77829 |||||||| CAATTTAG.. .......... .......... .......... .......... .......... 390 AAAGCTGATG ATTTTCACTT ATTTGGAAAT TAATAGTTGA ACACACCATG GTATTGTAGG 77889 | .......... .......... .......... .......... .......... .........G 391 TACACTAGCT GCAACTCTTG CCAGGCACAG GTTGAAACCC AGGGTGTATA TAGGATGCAT 77949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACTAGCT GCAACTCTTG CCAGGCACAG GTTGAAACCC AGGGTGTATA TAGGATGCAT 451 GAAATCTGGA CCAGTTCTTT ATCAAAAGTA ACTTCTGTGA AGCTATTCTG GCCAGCTGAA 78009 |||||||||| |||||||||| ||||||| GAAATCTGGA CCAGTTCTTT ATCAAAA... .......... .......... .......... 478 TTAACTATAA ATTTTGAAGT TCAAAATTTC AGGATTTTTT ATTTACTAGT ATCTTTTCCA 78069 .......... .......... .......... .......... .......... .......... 478 TTTTTTCCTT GATAGGAGTG TTAAGTACCA TGAACCTGAG TTCTGGAAAT TTGGGGAGAC 78129 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GAGTG TTAAGTACCA TGAACCTGAG TTCTGGAAAT TTGGGGAGAC 523 GGGGAATAAG TACTTCCGAC ATGCAACTGG ACAGATATAC GCCATCTCGA AAGAGT 78185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGGGAATAAG TACTTCCGAC ATGCAACTGG ACAGATATAC GCCATCTCGA AAGAGT 579 hqPGS_C08HBa0037O11.1+_SGN-E264427+ (75490 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78185) ******************************************************************************** EST sequence 65 +strand 377 n (File: SGN-E258938+) 1 TTGAGGACAG ATTCTGGAGG ACGTGGCACG AGAAAGAAGA CATTTCTGGT TATTGGGATA 61 AACACGGTCT TCAGTAGTAG AAAAAGGCGC GATCCTATTA GAGAGACTTG GATGCCTCAA 121 GGTGCAAAGC TACATAGATT AGAGCAAGAA AAGGGGATAA TAGTGCGTTT CATGATAGGC 181 CACAGCGCGA TATTGAATAG CGTGTTAGAT CTAGCCATTG ATAGTGAAGA TGCTCAGCAT 241 AATGACATTC TTCGACTCGA TCACGTAGAA GGCTATCTTG AGTTAACTGC AAAAACGAAA 301 GCTTTCTTCT CCCTTGCAGT TGCGAAACGG GATGCTGAGT TCTATGTGCA TATTGATGAT 361 GATGTTCATG TCAATTT Predicted gene structure (within gDNA segment 74901 to 78385): Exon 1 75501 75621 ( 121 n); cDNA 1 121 ( 121 n); score: 0.959 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 0.98), Pa: 0.999 (s: 0.96) Exon 2 75707 75770 ( 64 n); cDNA 122 185 ( 64 n); score: 0.969 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 0.98), Pa: 0.960 (s: 0.92) Exon 3 77504 77576 ( 73 n); cDNA 186 258 ( 73 n); score: 0.932 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 0.96), Pa: 0.998 (s: 0.98) Exon 4 77657 77775 ( 119 n); cDNA 259 377 ( 119 n); score: 0.966 MATCH C08HBa0037O11.1+ SGN-E258938+ 0.958 377 1.000 C PGS_C08HBa0037O11.1+_SGN-E258938+ (75501 75621,75707 75770,77504 77576,77657 77775) Alignment (genomic DNA sequence = upper lines): TTGAGGACAG ATTCTGGAGG AAGTGGAACG AGAAAGAAGA CATTTATGGT TATTGGGATA 75560 |||||||||| |||||||||| | |||| ||| |||||||||| ||||| |||| |||||||||| TTGAGGACAG ATTCTGGAGG ACGTGGCACG AGAAAGAAGA CATTTCTGGT TATTGGGATA 60 AACACGGCCT TCAGTAGTAG AAAAAGGCGC GATTCTATTA GAGAGACTTG GATGCCTCAA 75620 ||||||| || |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AACACGGTCT TCAGTAGTAG AAAAAGGCGC GATCCTATTA GAGAGACTTG GATGCCTCAA 120 GGTATTAATT ATAAGATTAT TGATGTATAT ACTTCTTCGG TTTTCATTTT CTTCCTCCTT 75680 | G......... .......... .......... .......... .......... .......... 121 TGACAACATT TTGTGTGTTT GCGTAGGTAC AAAGCTACAT AGATTAGAGC AAGAAAAGGG 75740 || | |||||||||| |||||||||| |||||||||| .......... .......... ......GTGC AAAGCTACAT AGATTAGAGC AAGAAAAGGG 155 GATAATTGTG CGTTTCATGA TAGGCCACAG GTATGATCTG CAGTGCTCCA TATCTTCTCC 75800 |||||| ||| |||||||||| |||||||||| GATAATAGTG CGTTTCATGA TAGGCCACAG .......... .......... .......... 185 ATGCCAAACA TATAGATTCT CATTCATCAA TGAGTTTCTG CTGGAGTCTC ATATTCTTTC 75860 .......... .......... .......... .......... .......... .......... 185 TTGATAATAT GCTTCCTGTT CTTTGTTTTA AATATCCTTT GTTTCACTTA AAAGTTGAAT 75920 .......... .......... .......... .......... .......... .......... 185 GTATGATTAG CTTTTCAAGA GATATACGAA GGAAATTATC AGAAGCTTTG TTAAGAGTTA 75980 .......... .......... .......... .......... .......... .......... 185 GTAATTCACT ACTAAAGATG AAATGGAAAG ATTTAAGACA AGGTATAGAG AACTGCCAGT 76040 .......... .......... .......... .......... .......... .......... 185 GAGTGATTAT AGAATCATCT GTAATCTAGC ATTCTGGCAC CTTTTTCCTT TTCTATCTGG 76100 .......... .......... .......... .......... .......... .......... 185 TAATGTGCAG CATGCCACTT GTGAACGAAG CTGTAAGAAG TTCATTATGC TGCTTAAAGG 76160 .......... .......... .......... .......... .......... .......... 185 GACCTGCAAG AACTTTGAAT CTTCTATAAA ACACTATTTG TCTTCATATT TCTTAGAACA 76220 .......... .......... .......... .......... .......... .......... 185 AAATACTAAA GGTATTTAGA GTTGGTATTC TAACTAAATT GGAGGGAGCA GCAACTCGGA 76280 .......... .......... .......... .......... .......... .......... 185 AGTACTTACT TCAGTCCCAT CACTGAAAGA CGTGACTTTC GGACTGGGAA TGCCATTTGT 76340 .......... .......... .......... .......... .......... .......... 185 CGCATAAGTT ATGATGATCC ATGCTAATTT TCCTATTGTA GCTTCAAAAT TATCAAATTA 76400 .......... .......... .......... .......... .......... .......... 185 AAGGATATTA GCTTTTGTTG AGGATGTAGA TTTGAATCAA TGACATTCAA CGCTTCAATT 76460 .......... .......... .......... .......... .......... .......... 185 TACTTCTGTC TTTAGAAATG TCAAAGACGT GCAAATATCT TGCCATGAGC AGTGTGATGT 76520 .......... .......... .......... .......... .......... .......... 185 GCCTCTTAGT TGCTTAGTTC TTACTTGTGA ACACTATTCC ATCGATCAAT TTAGTTGGAA 76580 .......... .......... .......... .......... .......... .......... 185 CTGAATTACG CTGTTATTGC ATTTGTACTT ATATTGCAAC TGTAAAAGGC AAAGTAATAA 76640 .......... .......... .......... .......... .......... .......... 185 CATCCTTTAT GAGTTTCATG TTTGATGGCT TCTATACTTT TCAATCTTGG GTAGATATAT 76700 .......... .......... .......... .......... .......... .......... 185 CACAAGCCCT GGAGTATGGC TTTAACTTGA TGCCCAACAT GATAAGAATA AGTGCAGGAT 76760 .......... .......... .......... .......... .......... .......... 185 AAGTGTTTTC TTTTGTCTTC TTTTTTGTTT CTTTTAATTG AAATTTTAAA CAGCAGCATG 76820 .......... .......... .......... .......... .......... .......... 185 AAAGGTTACT GTTTATCAGA GTATGAAAGG TTTTTTCTAG GGCTAAATGG TGCATTTGGA 76880 .......... .......... .......... .......... .......... .......... 185 TATAAATGTG GGAGATTGGT TCTCTTGTGG AAATTGTATC TTCCATGATA CTAAGTCATA 76940 .......... .......... .......... .......... .......... .......... 185 GATAAGCCAT GAGAGGTTCA GACACAGTAT GTTGCACATT TTCTCACCTA TGATAATCTG 77000 .......... .......... .......... .......... .......... .......... 185 CCAAATGCTT TTTGCTATCC TTCTGGAGGC AGTTTACAAC TTCCTAATTT TCGAGGTGTC 77060 .......... .......... .......... .......... .......... .......... 185 TGTAAATTGA GTGATAATTA CATTTCTGCT TAAGGGATAA GCTCAGTCAC CAAAAGTTTC 77120 .......... .......... .......... .......... .......... .......... 185 CATCTTTTCT TTCTGTTCAC TTTGTTGTGT TCAGATCATG TTATTGAATT TAATCCCGAA 77180 .......... .......... .......... .......... .......... .......... 185 GAAGTTTGTA CTAAGTTCAA AAATAGAAGT TCAAGTTATT ACATCACATT AGGTTCAAAC 77240 .......... .......... .......... .......... .......... .......... 185 AAAAAGACGA GTAGAACCAT CTAAACTGAT GAAAGTTATT GGATTGCCCA ACAAACTGGA 77300 .......... .......... .......... .......... .......... .......... 185 TCTTTGATCA CTAGTTCTCA ATAAGGATAC AGCCAGGAAA TTCTATGTTT GAGGTTTACA 77360 .......... .......... .......... .......... .......... .......... 185 ACATACTTAA ACGAGGAAAA TGTTTCCTAT TCTTTCACTT CCTCTCTTTA TTTTTTGATT 77420 .......... .......... .......... .......... .......... .......... 185 GTTGTTTTGT TGAGCCTACA CCAATATAAT TATCTGAAAT GTCGTAGGCT GTGCTCTAAA 77480 .......... .......... .......... .......... .......... .......... 185 AGTTCTTATA CTCCTTAATA CAGCGCGATA TCGAATAGCA TTTTAGATCG AGCCATTGAT 77540 ||||||| | ||||||| | ||||||| |||||||||| .......... .......... ...CGCGATA TTGAATAGCG TGTTAGATCT AGCCATTGAT 222 AGTGAAGATG CTCAGCATAA TGACATTCTT CGACTTGTAA GTAAAAAATG TTCTCTGATT 77600 |||||||||| |||||||||| |||||||||| ||||| AGTGAAGATG CTCAGCATAA TGACATTCTT CGACTC.... .......... .......... 258 TGCTTCCGTC TGATTGTTTT ATCTTTCTAG TTTGATCTCA TTACTATATT TTACAGGATC 77660 |||| .......... .......... .......... .......... .......... ......GATC 262 ACGTAGAAGG CTATCATGAG TTAACTGCAA AAACGAAAGC TTTCTTCTCC CTTGCAGTTG 77720 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTAGAAGG CTATCTTGAG TTAACTGCAA AAACGAAAGC TTTCTTCTCC CTTGCAGTTG 322 CGAAATGGGA TGCTGAGTTC TATGTGAAGA TTGATGATGA TGTTCATGTC AATTT 77775 ||||| |||| |||||||||| |||||| | | |||||||||| |||||||||| ||||| CGAAACGGGA TGCTGAGTTC TATGTGCATA TTGATGATGA TGTTCATGTC AATTT 377 hqPGS_C08HBa0037O11.1+_SGN-E258938+ (75501 75621,75707 75770,77504 77576,77657 77775) ******************************************************************************** EST sequence 40 +strand 507 n (File: SGN-E271260+) 1 GAGGACAGAT TCTGGAGGAA GTGGAACGAG AAAGAAGACA TTTATGGTTA TTGGGATAAA 61 CACGGCCTTC AGTAGTAGAA AAAGGCGCGA TTCTATTAGA GAGACTTGGA TGCCTCAAGG 121 TACAAAGCTA CATAGATTAG AGCAAGAAAA GGGGATAATT GTGCGTTTCA TGATAGGCCA 181 CAGCGCGATA TCGAATAGCA TTTTAGATCG AGCCATTGAT AGTGAAGATG CTCAGCATAA 241 TGACATTCTT CGACTTGATC ACGTAGAAGG CTATCATGAG TTAACTGCAA AAACGAAAGC 301 TTTCTTCTCC CTTGCAGTTG CGAAATGGGA TGCTGAGTTC TATGTGAAGA TTGATGATGA 361 TGTTCATGTC AATTTAGGTA CACTAGCTGC AACTCTTGCC AGGCACAGGT TGAAACCCAG 421 CGTGTATATA GGATGCATGA AATCTGGACC AGTTCTTTAT CAAAAGAGTG TTAAGTACCA 481 TGAACCTGAG TTCTGGAAAT TTGGGGA Predicted gene structure (within gDNA segment 74903 to 78736): Exon 1 75503 75621 ( 119 n); cDNA 1 119 ( 119 n); score: 1.000 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75707 75770 ( 64 n); cDNA 120 183 ( 64 n); score: 1.000 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 77504 77576 ( 73 n); cDNA 184 256 ( 73 n); score: 1.000 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 77657 77777 ( 121 n); cDNA 257 377 ( 121 n); score: 1.000 Intron 4 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 0.98) Exon 5 77889 77976 ( 88 n); cDNA 378 465 ( 88 n); score: 0.989 Intron 5 77977 78084 ( 108 n); Pd: 0.024 (s: 0.98), Pa: 0.995 (s: 1.00) Exon 6 78085 78126 ( 42 n); cDNA 466 507 ( 42 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E271260+ 0.998 507 1.000 C PGS_C08HBa0037O11.1+_SGN-E271260+ (75503 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78126) Alignment (genomic DNA sequence = upper lines): GAGGACAGAT TCTGGAGGAA GTGGAACGAG AAAGAAGACA TTTATGGTTA TTGGGATAAA 75562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACAGAT TCTGGAGGAA GTGGAACGAG AAAGAAGACA TTTATGGTTA TTGGGATAAA 60 CACGGCCTTC AGTAGTAGAA AAAGGCGCGA TTCTATTAGA GAGACTTGGA TGCCTCAAGG 75622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CACGGCCTTC AGTAGTAGAA AAAGGCGCGA TTCTATTAGA GAGACTTGGA TGCCTCAAG. 119 TATTAATTAT AAGATTATTG ATGTATATAC TTCTTCGGTT TTCATTTTCT TCCTCCTTTG 75682 .......... .......... .......... .......... .......... .......... 119 ACAACATTTT GTGTGTTTGC GTAGGTACAA AGCTACATAG ATTAGAGCAA GAAAAGGGGA 75742 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTACAA AGCTACATAG ATTAGAGCAA GAAAAGGGGA 155 TAATTGTGCG TTTCATGATA GGCCACAGGT ATGATCTGCA GTGCTCCATA TCTTCTCCAT 75802 |||||||||| |||||||||| |||||||| TAATTGTGCG TTTCATGATA GGCCACAG.. .......... .......... .......... 183 GCCAAACATA TAGATTCTCA TTCATCAATG AGTTTCTGCT GGAGTCTCAT ATTCTTTCTT 75862 .......... .......... .......... .......... .......... .......... 183 GATAATATGC TTCCTGTTCT TTGTTTTAAA TATCCTTTGT TTCACTTAAA AGTTGAATGT 75922 .......... .......... .......... .......... .......... .......... 183 ATGATTAGCT TTTCAAGAGA TATACGAAGG AAATTATCAG AAGCTTTGTT AAGAGTTAGT 75982 .......... .......... .......... .......... .......... .......... 183 AATTCACTAC TAAAGATGAA ATGGAAAGAT TTAAGACAAG GTATAGAGAA CTGCCAGTGA 76042 .......... .......... .......... .......... .......... .......... 183 GTGATTATAG AATCATCTGT AATCTAGCAT TCTGGCACCT TTTTCCTTTT CTATCTGGTA 76102 .......... .......... .......... .......... .......... .......... 183 ATGTGCAGCA TGCCACTTGT GAACGAAGCT GTAAGAAGTT CATTATGCTG CTTAAAGGGA 76162 .......... .......... .......... .......... .......... .......... 183 CCTGCAAGAA CTTTGAATCT TCTATAAAAC ACTATTTGTC TTCATATTTC TTAGAACAAA 76222 .......... .......... .......... .......... .......... .......... 183 ATACTAAAGG TATTTAGAGT TGGTATTCTA ACTAAATTGG AGGGAGCAGC AACTCGGAAG 76282 .......... .......... .......... .......... .......... .......... 183 TACTTACTTC AGTCCCATCA CTGAAAGACG TGACTTTCGG ACTGGGAATG CCATTTGTCG 76342 .......... .......... .......... .......... .......... .......... 183 CATAAGTTAT GATGATCCAT GCTAATTTTC CTATTGTAGC TTCAAAATTA TCAAATTAAA 76402 .......... .......... .......... .......... .......... .......... 183 GGATATTAGC TTTTGTTGAG GATGTAGATT TGAATCAATG ACATTCAACG CTTCAATTTA 76462 .......... .......... .......... .......... .......... .......... 183 CTTCTGTCTT TAGAAATGTC AAAGACGTGC AAATATCTTG CCATGAGCAG TGTGATGTGC 76522 .......... .......... .......... .......... .......... .......... 183 CTCTTAGTTG CTTAGTTCTT ACTTGTGAAC ACTATTCCAT CGATCAATTT AGTTGGAACT 76582 .......... .......... .......... .......... .......... .......... 183 GAATTACGCT GTTATTGCAT TTGTACTTAT ATTGCAACTG TAAAAGGCAA AGTAATAACA 76642 .......... .......... .......... .......... .......... .......... 183 TCCTTTATGA GTTTCATGTT TGATGGCTTC TATACTTTTC AATCTTGGGT AGATATATCA 76702 .......... .......... .......... .......... .......... .......... 183 CAAGCCCTGG AGTATGGCTT TAACTTGATG CCCAACATGA TAAGAATAAG TGCAGGATAA 76762 .......... .......... .......... .......... .......... .......... 183 GTGTTTTCTT TTGTCTTCTT TTTTGTTTCT TTTAATTGAA ATTTTAAACA GCAGCATGAA 76822 .......... .......... .......... .......... .......... .......... 183 AGGTTACTGT TTATCAGAGT ATGAAAGGTT TTTTCTAGGG CTAAATGGTG CATTTGGATA 76882 .......... .......... .......... .......... .......... .......... 183 TAAATGTGGG AGATTGGTTC TCTTGTGGAA ATTGTATCTT CCATGATACT AAGTCATAGA 76942 .......... .......... .......... .......... .......... .......... 183 TAAGCCATGA GAGGTTCAGA CACAGTATGT TGCACATTTT CTCACCTATG ATAATCTGCC 77002 .......... .......... .......... .......... .......... .......... 183 AAATGCTTTT TGCTATCCTT CTGGAGGCAG TTTACAACTT CCTAATTTTC GAGGTGTCTG 77062 .......... .......... .......... .......... .......... .......... 183 TAAATTGAGT GATAATTACA TTTCTGCTTA AGGGATAAGC TCAGTCACCA AAAGTTTCCA 77122 .......... .......... .......... .......... .......... .......... 183 TCTTTTCTTT CTGTTCACTT TGTTGTGTTC AGATCATGTT ATTGAATTTA ATCCCGAAGA 77182 .......... .......... .......... .......... .......... .......... 183 AGTTTGTACT AAGTTCAAAA ATAGAAGTTC AAGTTATTAC ATCACATTAG GTTCAAACAA 77242 .......... .......... .......... .......... .......... .......... 183 AAAGACGAGT AGAACCATCT AAACTGATGA AAGTTATTGG ATTGCCCAAC AAACTGGATC 77302 .......... .......... .......... .......... .......... .......... 183 TTTGATCACT AGTTCTCAAT AAGGATACAG CCAGGAAATT CTATGTTTGA GGTTTACAAC 77362 .......... .......... .......... .......... .......... .......... 183 ATACTTAAAC GAGGAAAATG TTTCCTATTC TTTCACTTCC TCTCTTTATT TTTTGATTGT 77422 .......... .......... .......... .......... .......... .......... 183 TGTTTTGTTG AGCCTACACC AATATAATTA TCTGAAATGT CGTAGGCTGT GCTCTAAAAG 77482 .......... .......... .......... .......... .......... .......... 183 TTCTTATACT CCTTAATACA GCGCGATATC GAATAGCATT TTAGATCGAG CCATTGATAG 77542 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CGCGATATC GAATAGCATT TTAGATCGAG CCATTGATAG 222 TGAAGATGCT CAGCATAATG ACATTCTTCG ACTTGTAAGT AAAAAATGTT CTCTGATTTG 77602 |||||||||| |||||||||| |||||||||| |||| TGAAGATGCT CAGCATAATG ACATTCTTCG ACTT...... .......... .......... 256 CTTCCGTCTG ATTGTTTTAT CTTTCTAGTT TGATCTCATT ACTATATTTT ACAGGATCAC 77662 |||||| .......... .......... .......... .......... .......... ....GATCAC 262 GTAGAAGGCT ATCATGAGTT AACTGCAAAA ACGAAAGCTT TCTTCTCCCT TGCAGTTGCG 77722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAAGGCT ATCATGAGTT AACTGCAAAA ACGAAAGCTT TCTTCTCCCT TGCAGTTGCG 322 AAATGGGATG CTGAGTTCTA TGTGAAGATT GATGATGATG TTCATGTCAA TTTAGGTACA 77782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAATGGGATG CTGAGTTCTA TGTGAAGATT GATGATGATG TTCATGTCAA TTTAG..... 377 TCTCCCTTTT TTTCTTGCCA TATGTACATT ATAGTTCCGG ACAACTGAAA GCTGATGATT 77842 .......... .......... .......... .......... .......... .......... 377 TTCACTTATT TGGAAATTAA TAGTTGAACA CACCATGGTA TTGTAGGTAC ACTAGCTGCA 77902 |||| |||||||||| .......... .......... .......... .......... ......GTAC ACTAGCTGCA 391 ACTCTTGCCA GGCACAGGTT GAAACCCAGG GTGTATATAG GATGCATGAA ATCTGGACCA 77962 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACTCTTGCCA GGCACAGGTT GAAACCCAGC GTGTATATAG GATGCATGAA ATCTGGACCA 451 GTTCTTTATC AAAAGTAACT TCTGTGAAGC TATTCTGGCC AGCTGAATTA ACTATAAATT 78022 |||||||||| |||| GTTCTTTATC AAAA...... .......... .......... .......... .......... 465 TTGAAGTTCA AAATTTCAGG ATTTTTTATT TACTAGTATC TTTTCCATTT TTTCCTTGAT 78082 .......... .......... .......... .......... .......... .......... 465 AGGAGTGTTA AGTACCATGA ACCTGAGTTC TGGAAATTTG GGGA 78126 |||||||| |||||||||| |||||||||| |||||||||| |||| ..GAGTGTTA AGTACCATGA ACCTGAGTTC TGGAAATTTG GGGA 507 hqPGS_C08HBa0037O11.1+_SGN-E271260+ (75503 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78126) ******************************************************************************** EST sequence 62 +strand 566 n (File: SGN-E233760+) 1 TGGAGGAAGT GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA CGGCCTTCAG 61 TAGTAGAAAA AGGCGCGATT CTATTAGAGA GACTTGGATG CCTCAAGGTA CAAAGCTACA 121 TAGATTAGAG CAAGAAAAGG GGATAATTGT GCGTTTCATG ATAGGCCACA GCGCGATATC 181 GAATAGCATT TTAGATCGAG CCATTGATAG TGAAGATGCT CAGCATAATG ACATTCTTCG 241 ACTTGATCAC GTAGAAGGCT ATCATGAGTT AACTGCAAAA ACGAAAGCTT TCTTCTCCCT 301 TGCAGTTGCG AAATGGGATG CTGAGTTCTA TGTGAAGATT GATGATGATG TTCATGTCAA 361 TTTAGGTACA CTAGCTGCAA CTCTTGCCAG GCACAGGTTG AAACCCAGGG TGTATATAGG 421 ATGCATGAAA TCTGGACCAG TTCTTTATCA AAAGAGTGTT AAGTACCATG AACCTGAGTT 481 CTGGAAATTT GGGGAGACGG GGAATAAGTA CTTCCGACAT GCAACTGGAC AGATATACGC 541 CATCTCGAAA GATTGGCAAC ATATGT Predicted gene structure (within gDNA segment 74915 to 78933): Exon 1 75515 75621 ( 107 n); cDNA 1 107 ( 107 n); score: 1.000 Intron 1 75622 75706 ( 85 n); Pd: 0.995 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 75707 75770 ( 64 n); cDNA 108 171 ( 64 n); score: 1.000 Intron 2 75771 77503 (1733 n); Pd: 0.983 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 77504 77576 ( 73 n); cDNA 172 244 ( 73 n); score: 1.000 Intron 3 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 77657 77777 ( 121 n); cDNA 245 365 ( 121 n); score: 1.000 Intron 4 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 5 77889 77976 ( 88 n); cDNA 366 453 ( 88 n); score: 1.000 Intron 5 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 78085 78198 ( 114 n); cDNA 454 566 ( 113 n); score: 0.991 MATCH C08HBa0037O11.1+ SGN-E233760+ 0.998 567 1.002 C PGS_C08HBa0037O11.1+_SGN-E233760+ (75515 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78198) Alignment (genomic DNA sequence = upper lines): TGGAGGAAGT GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA CGGCCTTCAG 75574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGAAGT GGAACGAGAA AGAAGACATT TATGGTTATT GGGATAAACA CGGCCTTCAG 60 TAGTAGAAAA AGGCGCGATT CTATTAGAGA GACTTGGATG CCTCAAGGTA TTAATTATAA 75634 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAGTAGAAAA AGGCGCGATT CTATTAGAGA GACTTGGATG CCTCAAG... .......... 107 GATTATTGAT GTATATACTT CTTCGGTTTT CATTTTCTTC CTCCTTTGAC AACATTTTGT 75694 .......... .......... .......... .......... .......... .......... 107 GTGTTTGCGT AGGTACAAAG CTACATAGAT TAGAGCAAGA AAAGGGGATA ATTGTGCGTT 75754 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTACAAAG CTACATAGAT TAGAGCAAGA AAAGGGGATA ATTGTGCGTT 155 TCATGATAGG CCACAGGTAT GATCTGCAGT GCTCCATATC TTCTCCATGC CAAACATATA 75814 |||||||||| |||||| TCATGATAGG CCACAG.... .......... .......... .......... .......... 171 GATTCTCATT CATCAATGAG TTTCTGCTGG AGTCTCATAT TCTTTCTTGA TAATATGCTT 75874 .......... .......... .......... .......... .......... .......... 171 CCTGTTCTTT GTTTTAAATA TCCTTTGTTT CACTTAAAAG TTGAATGTAT GATTAGCTTT 75934 .......... .......... .......... .......... .......... .......... 171 TCAAGAGATA TACGAAGGAA ATTATCAGAA GCTTTGTTAA GAGTTAGTAA TTCACTACTA 75994 .......... .......... .......... .......... .......... .......... 171 AAGATGAAAT GGAAAGATTT AAGACAAGGT ATAGAGAACT GCCAGTGAGT GATTATAGAA 76054 .......... .......... .......... .......... .......... .......... 171 TCATCTGTAA TCTAGCATTC TGGCACCTTT TTCCTTTTCT ATCTGGTAAT GTGCAGCATG 76114 .......... .......... .......... .......... .......... .......... 171 CCACTTGTGA ACGAAGCTGT AAGAAGTTCA TTATGCTGCT TAAAGGGACC TGCAAGAACT 76174 .......... .......... .......... .......... .......... .......... 171 TTGAATCTTC TATAAAACAC TATTTGTCTT CATATTTCTT AGAACAAAAT ACTAAAGGTA 76234 .......... .......... .......... .......... .......... .......... 171 TTTAGAGTTG GTATTCTAAC TAAATTGGAG GGAGCAGCAA CTCGGAAGTA CTTACTTCAG 76294 .......... .......... .......... .......... .......... .......... 171 TCCCATCACT GAAAGACGTG ACTTTCGGAC TGGGAATGCC ATTTGTCGCA TAAGTTATGA 76354 .......... .......... .......... .......... .......... .......... 171 TGATCCATGC TAATTTTCCT ATTGTAGCTT CAAAATTATC AAATTAAAGG ATATTAGCTT 76414 .......... .......... .......... .......... .......... .......... 171 TTGTTGAGGA TGTAGATTTG AATCAATGAC ATTCAACGCT TCAATTTACT TCTGTCTTTA 76474 .......... .......... .......... .......... .......... .......... 171 GAAATGTCAA AGACGTGCAA ATATCTTGCC ATGAGCAGTG TGATGTGCCT CTTAGTTGCT 76534 .......... .......... .......... .......... .......... .......... 171 TAGTTCTTAC TTGTGAACAC TATTCCATCG ATCAATTTAG TTGGAACTGA ATTACGCTGT 76594 .......... .......... .......... .......... .......... .......... 171 TATTGCATTT GTACTTATAT TGCAACTGTA AAAGGCAAAG TAATAACATC CTTTATGAGT 76654 .......... .......... .......... .......... .......... .......... 171 TTCATGTTTG ATGGCTTCTA TACTTTTCAA TCTTGGGTAG ATATATCACA AGCCCTGGAG 76714 .......... .......... .......... .......... .......... .......... 171 TATGGCTTTA ACTTGATGCC CAACATGATA AGAATAAGTG CAGGATAAGT GTTTTCTTTT 76774 .......... .......... .......... .......... .......... .......... 171 GTCTTCTTTT TTGTTTCTTT TAATTGAAAT TTTAAACAGC AGCATGAAAG GTTACTGTTT 76834 .......... .......... .......... .......... .......... .......... 171 ATCAGAGTAT GAAAGGTTTT TTCTAGGGCT AAATGGTGCA TTTGGATATA AATGTGGGAG 76894 .......... .......... .......... .......... .......... .......... 171 ATTGGTTCTC TTGTGGAAAT TGTATCTTCC ATGATACTAA GTCATAGATA AGCCATGAGA 76954 .......... .......... .......... .......... .......... .......... 171 GGTTCAGACA CAGTATGTTG CACATTTTCT CACCTATGAT AATCTGCCAA ATGCTTTTTG 77014 .......... .......... .......... .......... .......... .......... 171 CTATCCTTCT GGAGGCAGTT TACAACTTCC TAATTTTCGA GGTGTCTGTA AATTGAGTGA 77074 .......... .......... .......... .......... .......... .......... 171 TAATTACATT TCTGCTTAAG GGATAAGCTC AGTCACCAAA AGTTTCCATC TTTTCTTTCT 77134 .......... .......... .......... .......... .......... .......... 171 GTTCACTTTG TTGTGTTCAG ATCATGTTAT TGAATTTAAT CCCGAAGAAG TTTGTACTAA 77194 .......... .......... .......... .......... .......... .......... 171 GTTCAAAAAT AGAAGTTCAA GTTATTACAT CACATTAGGT TCAAACAAAA AGACGAGTAG 77254 .......... .......... .......... .......... .......... .......... 171 AACCATCTAA ACTGATGAAA GTTATTGGAT TGCCCAACAA ACTGGATCTT TGATCACTAG 77314 .......... .......... .......... .......... .......... .......... 171 TTCTCAATAA GGATACAGCC AGGAAATTCT ATGTTTGAGG TTTACAACAT ACTTAAACGA 77374 .......... .......... .......... .......... .......... .......... 171 GGAAAATGTT TCCTATTCTT TCACTTCCTC TCTTTATTTT TTGATTGTTG TTTTGTTGAG 77434 .......... .......... .......... .......... .......... .......... 171 CCTACACCAA TATAATTATC TGAAATGTCG TAGGCTGTGC TCTAAAAGTT CTTATACTCC 77494 .......... .......... .......... .......... .......... .......... 171 TTAATACAGC GCGATATCGA ATAGCATTTT AGATCGAGCC ATTGATAGTG AAGATGCTCA 77554 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C GCGATATCGA ATAGCATTTT AGATCGAGCC ATTGATAGTG AAGATGCTCA 222 GCATAATGAC ATTCTTCGAC TTGTAAGTAA AAAATGTTCT CTGATTTGCT TCCGTCTGAT 77614 |||||||||| |||||||||| || GCATAATGAC ATTCTTCGAC TT........ .......... .......... .......... 244 TGTTTTATCT TTCTAGTTTG ATCTCATTAC TATATTTTAC AGGATCACGT AGAAGGCTAT 77674 |||||||| |||||||||| .......... .......... .......... .......... ..GATCACGT AGAAGGCTAT 262 CATGAGTTAA CTGCAAAAAC GAAAGCTTTC TTCTCCCTTG CAGTTGCGAA ATGGGATGCT 77734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAGTTAA CTGCAAAAAC GAAAGCTTTC TTCTCCCTTG CAGTTGCGAA ATGGGATGCT 322 GAGTTCTATG TGAAGATTGA TGATGATGTT CATGTCAATT TAGGTACATC TCCCTTTTTT 77794 |||||||||| |||||||||| |||||||||| |||||||||| ||| GAGTTCTATG TGAAGATTGA TGATGATGTT CATGTCAATT TAG....... .......... 365 TCTTGCCATA TGTACATTAT AGTTCCGGAC AACTGAAAGC TGATGATTTT CACTTATTTG 77854 .......... .......... .......... .......... .......... .......... 365 GAAATTAATA GTTGAACACA CCATGGTATT GTAGGTACAC TAGCTGCAAC TCTTGCCAGG 77914 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTACAC TAGCTGCAAC TCTTGCCAGG 391 CACAGGTTGA AACCCAGGGT GTATATAGGA TGCATGAAAT CTGGACCAGT TCTTTATCAA 77974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGGTTGA AACCCAGGGT GTATATAGGA TGCATGAAAT CTGGACCAGT TCTTTATCAA 451 AAGTAACTTC TGTGAAGCTA TTCTGGCCAG CTGAATTAAC TATAAATTTT GAAGTTCAAA 78034 || AA........ .......... .......... .......... .......... .......... 453 ATTTCAGGAT TTTTTATTTA CTAGTATCTT TTCCATTTTT TCCTTGATAG GAGTGTTAAG 78094 |||||||||| .......... .......... .......... .......... .......... GAGTGTTAAG 463 TACCATGAAC CTGAGTTCTG GAAATTTGGG GAGACGGGGA ATAAGTACTT CCGACATGCA 78154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCATGAAC CTGAGTTCTG GAAATTTGGG GAGACGGGGA ATAAGTACTT CCGACATGCA 523 ACTGGACAGA TATACGCCAT CTCGAAAGAG TTGGCAACAT ATGT 78198 |||||||||| |||||||||| ||||||||| |||||||||| |||| ACTGGACAGA TATACGCCAT CTCGAAAGA- TTGGCAACAT ATGT 566 hqPGS_C08HBa0037O11.1+_SGN-E233760+ (75515 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78198) ******************************************************************************** EST sequence 33 +strand 572 n (File: SGN-E253031+) 1 AAAAGGGGAT AATTGTGCGT TTCATGATAG GCCACAGCGC GATATCGAAT AGCATTTTAG 61 ATCGAGCCAT TGATAGTGAA GATGCTCAGC ATAATGACAT TCTTCGACTT GATCACGTAG 121 AAGGCTATCA TGAGTTAACT GCAAAAACGA AAGCTTTCTT CTCCCTTGCA GTTGCGAAAT 181 GGGATGCTGA GTTCTATGTG AAGATTGATG ATGATGTTCA TGTCAATTTA GGTACACTAG 241 CTGCAACTCT TGCCAGGCAC AGGTTGAAAC CCAGGGTGTA TATAGGATGC ATGAAATCTG 301 GACCAGTTCT TTATCAAAAG AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG 361 AGACGGGGAA TAAGTACTTC CGACATGCAA CTGGACAGAT ATACGCCATC TCGAAAGAGT 421 TGGCAACATA TGTTGCCAAC AACAGACCTA TTCTGCATAA GTATGCTAAT GAAGATGTGT 481 CACTCGGGGC ATGGTTGATT GGTCTAGAAG TTGAGCATAT TGATGATCGG AACCTGTGTT 541 GTGGAACTCC GCCTGAATGC GAATGGAAAG CA Predicted gene structure (within gDNA segment 75134 to 79686): Exon 1 75734 75770 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 75771 77503 (1733 n); Pd: 0.983 (s: 0), Pa: 0.960 (s: 1.00) Exon 2 77504 77576 ( 73 n); cDNA 38 110 ( 73 n); score: 1.000 Intron 2 77577 77656 ( 80 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 77657 77777 ( 121 n); cDNA 111 231 ( 121 n); score: 1.000 Intron 3 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 77889 77976 ( 88 n); cDNA 232 319 ( 88 n); score: 1.000 Intron 4 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 78085 78210 ( 126 n); cDNA 320 445 ( 126 n); score: 1.000 Intron 5 78211 78796 ( 586 n); Pd: 0.999 (s: 1.00), Pa: 0.963 (s: 1.00) Exon 6 78797 78906 ( 110 n); cDNA 446 555 ( 110 n); score: 1.000 Intron 6 78907 78992 ( 86 n); Pd: 0.991 (s: 1.00), Pa: 0.511 (s: 0) Exon 7 78993 79009 ( 17 n); cDNA 556 572 ( 17 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E253031+ 1.000 572 1.000 C PGS_C08HBa0037O11.1+_SGN-E253031+ (75734 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79009) Alignment (genomic DNA sequence = upper lines): AAAAGGGGAT AATTGTGCGT TTCATGATAG GCCACAGGTA TGATCTGCAG TGCTCCATAT 75793 |||||||||| |||||||||| |||||||||| ||||||| AAAAGGGGAT AATTGTGCGT TTCATGATAG GCCACAG... .......... .......... 37 CTTCTCCATG CCAAACATAT AGATTCTCAT TCATCAATGA GTTTCTGCTG GAGTCTCATA 75853 .......... .......... .......... .......... .......... .......... 37 TTCTTTCTTG ATAATATGCT TCCTGTTCTT TGTTTTAAAT ATCCTTTGTT TCACTTAAAA 75913 .......... .......... .......... .......... .......... .......... 37 GTTGAATGTA TGATTAGCTT TTCAAGAGAT ATACGAAGGA AATTATCAGA AGCTTTGTTA 75973 .......... .......... .......... .......... .......... .......... 37 AGAGTTAGTA ATTCACTACT AAAGATGAAA TGGAAAGATT TAAGACAAGG TATAGAGAAC 76033 .......... .......... .......... .......... .......... .......... 37 TGCCAGTGAG TGATTATAGA ATCATCTGTA ATCTAGCATT CTGGCACCTT TTTCCTTTTC 76093 .......... .......... .......... .......... .......... .......... 37 TATCTGGTAA TGTGCAGCAT GCCACTTGTG AACGAAGCTG TAAGAAGTTC ATTATGCTGC 76153 .......... .......... .......... .......... .......... .......... 37 TTAAAGGGAC CTGCAAGAAC TTTGAATCTT CTATAAAACA CTATTTGTCT TCATATTTCT 76213 .......... .......... .......... .......... .......... .......... 37 TAGAACAAAA TACTAAAGGT ATTTAGAGTT GGTATTCTAA CTAAATTGGA GGGAGCAGCA 76273 .......... .......... .......... .......... .......... .......... 37 ACTCGGAAGT ACTTACTTCA GTCCCATCAC TGAAAGACGT GACTTTCGGA CTGGGAATGC 76333 .......... .......... .......... .......... .......... .......... 37 CATTTGTCGC ATAAGTTATG ATGATCCATG CTAATTTTCC TATTGTAGCT TCAAAATTAT 76393 .......... .......... .......... .......... .......... .......... 37 CAAATTAAAG GATATTAGCT TTTGTTGAGG ATGTAGATTT GAATCAATGA CATTCAACGC 76453 .......... .......... .......... .......... .......... .......... 37 TTCAATTTAC TTCTGTCTTT AGAAATGTCA AAGACGTGCA AATATCTTGC CATGAGCAGT 76513 .......... .......... .......... .......... .......... .......... 37 GTGATGTGCC TCTTAGTTGC TTAGTTCTTA CTTGTGAACA CTATTCCATC GATCAATTTA 76573 .......... .......... .......... .......... .......... .......... 37 GTTGGAACTG AATTACGCTG TTATTGCATT TGTACTTATA TTGCAACTGT AAAAGGCAAA 76633 .......... .......... .......... .......... .......... .......... 37 GTAATAACAT CCTTTATGAG TTTCATGTTT GATGGCTTCT ATACTTTTCA ATCTTGGGTA 76693 .......... .......... .......... .......... .......... .......... 37 GATATATCAC AAGCCCTGGA GTATGGCTTT AACTTGATGC CCAACATGAT AAGAATAAGT 76753 .......... .......... .......... .......... .......... .......... 37 GCAGGATAAG TGTTTTCTTT TGTCTTCTTT TTTGTTTCTT TTAATTGAAA TTTTAAACAG 76813 .......... .......... .......... .......... .......... .......... 37 CAGCATGAAA GGTTACTGTT TATCAGAGTA TGAAAGGTTT TTTCTAGGGC TAAATGGTGC 76873 .......... .......... .......... .......... .......... .......... 37 ATTTGGATAT AAATGTGGGA GATTGGTTCT CTTGTGGAAA TTGTATCTTC CATGATACTA 76933 .......... .......... .......... .......... .......... .......... 37 AGTCATAGAT AAGCCATGAG AGGTTCAGAC ACAGTATGTT GCACATTTTC TCACCTATGA 76993 .......... .......... .......... .......... .......... .......... 37 TAATCTGCCA AATGCTTTTT GCTATCCTTC TGGAGGCAGT TTACAACTTC CTAATTTTCG 77053 .......... .......... .......... .......... .......... .......... 37 AGGTGTCTGT AAATTGAGTG ATAATTACAT TTCTGCTTAA GGGATAAGCT CAGTCACCAA 77113 .......... .......... .......... .......... .......... .......... 37 AAGTTTCCAT CTTTTCTTTC TGTTCACTTT GTTGTGTTCA GATCATGTTA TTGAATTTAA 77173 .......... .......... .......... .......... .......... .......... 37 TCCCGAAGAA GTTTGTACTA AGTTCAAAAA TAGAAGTTCA AGTTATTACA TCACATTAGG 77233 .......... .......... .......... .......... .......... .......... 37 TTCAAACAAA AAGACGAGTA GAACCATCTA AACTGATGAA AGTTATTGGA TTGCCCAACA 77293 .......... .......... .......... .......... .......... .......... 37 AACTGGATCT TTGATCACTA GTTCTCAATA AGGATACAGC CAGGAAATTC TATGTTTGAG 77353 .......... .......... .......... .......... .......... .......... 37 GTTTACAACA TACTTAAACG AGGAAAATGT TTCCTATTCT TTCACTTCCT CTCTTTATTT 77413 .......... .......... .......... .......... .......... .......... 37 TTTGATTGTT GTTTTGTTGA GCCTACACCA ATATAATTAT CTGAAATGTC GTAGGCTGTG 77473 .......... .......... .......... .......... .......... .......... 37 CTCTAAAAGT TCTTATACTC CTTAATACAG CGCGATATCG AATAGCATTT TAGATCGAGC 77533 |||||||||| |||||||||| |||||||||| .......... .......... .......... CGCGATATCG AATAGCATTT TAGATCGAGC 67 CATTGATAGT GAAGATGCTC AGCATAATGA CATTCTTCGA CTTGTAAGTA AAAAATGTTC 77593 |||||||||| |||||||||| |||||||||| |||||||||| ||| CATTGATAGT GAAGATGCTC AGCATAATGA CATTCTTCGA CTT....... .......... 110 TCTGATTTGC TTCCGTCTGA TTGTTTTATC TTTCTAGTTT GATCTCATTA CTATATTTTA 77653 .......... .......... .......... .......... .......... .......... 110 CAGGATCACG TAGAAGGCTA TCATGAGTTA ACTGCAAAAA CGAAAGCTTT CTTCTCCCTT 77713 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GATCACG TAGAAGGCTA TCATGAGTTA ACTGCAAAAA CGAAAGCTTT CTTCTCCCTT 167 GCAGTTGCGA AATGGGATGC TGAGTTCTAT GTGAAGATTG ATGATGATGT TCATGTCAAT 77773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTTGCGA AATGGGATGC TGAGTTCTAT GTGAAGATTG ATGATGATGT TCATGTCAAT 227 TTAGGTACAT CTCCCTTTTT TTCTTGCCAT ATGTACATTA TAGTTCCGGA CAACTGAAAG 77833 |||| TTAG...... .......... .......... .......... .......... .......... 231 CTGATGATTT TCACTTATTT GGAAATTAAT AGTTGAACAC ACCATGGTAT TGTAGGTACA 77893 ||||| .......... .......... .......... .......... .......... .....GTACA 236 CTAGCTGCAA CTCTTGCCAG GCACAGGTTG AAACCCAGGG TGTATATAGG ATGCATGAAA 77953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGCTGCAA CTCTTGCCAG GCACAGGTTG AAACCCAGGG TGTATATAGG ATGCATGAAA 296 TCTGGACCAG TTCTTTATCA AAAGTAACTT CTGTGAAGCT ATTCTGGCCA GCTGAATTAA 78013 |||||||||| |||||||||| ||| TCTGGACCAG TTCTTTATCA AAA....... .......... .......... .......... 319 CTATAAATTT TGAAGTTCAA AATTTCAGGA TTTTTTATTT ACTAGTATCT TTTCCATTTT 78073 .......... .......... .......... .......... .......... .......... 319 TTCCTTGATA GGAGTGTTAA GTACCATGAA CCTGAGTTCT GGAAATTTGG GGAGACGGGG 78133 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GAGTGTTAA GTACCATGAA CCTGAGTTCT GGAAATTTGG GGAGACGGGG 368 AATAAGTACT TCCGACATGC AACTGGACAG ATATACGCCA TCTCGAAAGA GTTGGCAACA 78193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAGTACT TCCGACATGC AACTGGACAG ATATACGCCA TCTCGAAAGA GTTGGCAACA 428 TATGTTGCCA ACAACAGGTG AGATTTTTGT TCATACTAGG CTAAATGCTC TCTTGCTGTA 78253 |||||||||| ||||||| TATGTTGCCA ACAACAG... .......... .......... .......... .......... 445 GCATTCTATT TTGAACATGT TACCTTTGTA GAATATGATG TATGCTGATT GTAGTTTTGA 78313 .......... .......... .......... .......... .......... .......... 445 AGTTCTTTTG CGGTTGGAAT TGTTTATGCA AATGATAACA AGGAAACATA CACTTGAAAT 78373 .......... .......... .......... .......... .......... .......... 445 TGGGGAAAAT GGACATTCCT GCTCACTCAC TAACAGCCAC TCCATCCAAA ATTAGTAGAT 78433 .......... .......... .......... .......... .......... .......... 445 CATTTTTTAC ACGCATATAA AGATATCATA AATAAGAAGC TAATTTTACT AATTCACCTC 78493 .......... .......... .......... .......... .......... .......... 445 TTAAAAAACT TTTTTGAGAA TTTTACAAAT AGATGCAAAC AGTGTCAAAA AGAATTAATT 78553 .......... .......... .......... .......... .......... .......... 445 GCAAGGCTAA TATATGAAAA AAATTAATTA ATGATTTCTT GATTTAGTAA GATGGACAAC 78613 .......... .......... .......... .......... .......... .......... 445 CAATATGGGA GAACTATTTT AAATAAGATA ATCAACTAAT ATGGGATAGA AGGGTATAAC 78673 .......... .......... .......... .......... .......... .......... 445 AGATTTATCT AGATTGCGGG TTGCTCCTGT TTCAAACTTT CAGTTCTCTA GTATAATGCC 78733 .......... .......... .......... .......... .......... .......... 445 ACTAATCAGG AAGTGGATAT GAATGCTTGT CCATCTCATA GTGTGTACCG TGGTGATTTT 78793 .......... .......... .......... .......... .......... .......... 445 CAGACCTATT CTGCATAAGT ATGCTAATGA AGATGTGTCA CTCGGGGCAT GGTTGATTGG 78853 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ACCTATT CTGCATAAGT ATGCTAATGA AGATGTGTCA CTCGGGGCAT GGTTGATTGG 502 TCTAGAAGTT GAGCATATTG ATGATCGGAA CCTGTGTTGT GGAACTCCGC CTGGTTAGCA 78913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TCTAGAAGTT GAGCATATTG ATGATCGGAA CCTGTGTTGT GGAACTCCGC CTG....... 555 CTCCCTAAAT ATTTGTCATT TATCTTAGAT ATCTTAAAAT CTCAGTACCT AAAGTCTTTT 78973 .......... .......... .......... .......... .......... .......... 555 AAACCCTCCG CTGTGACAGA ATGCGAATGG AAAGCA 79009 | |||||||||| |||||| .......... .........A ATGCGAATGG AAAGCA 572 hqPGS_C08HBa0037O11.1+_SGN-E253031+ (75734 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79009) ******************************************************************************** EST sequence 80 +strand 540 n (File: SGN-E238286+) 1 GAAGGCTATC ATGAGTTAAC TGCAAAAACG AAAGCTTTCT TCTCCCTTGC AGTTGCGAAA 61 TGGGATGCTG AGTTCTATGT GAAGATTGAT GATGATGTTC ATGTCAATTT AGGTACACTA 121 GCTGCAACTC TTGCCAGGCA CAGGTTGAAA CCCAGGGTGT ATATAGGATG CATGAAATCT 181 GGACCAGTTC TTTATCAAAA GAGTGTTAAG TACCATGAAC CTGAGTTCTG GAAATTTGGG 241 GAGACGGGGA ATAAGTACTT CCGACATGCA ACTGGACAGA TATACGCCAT CTCGAAAGAG 301 TTGGCAACAT ATGTTGCCAA CAACAGACCT ATTCTGCATA AGTATGCTAA TGAAGATGTG 361 TCACTCGGGG CATGGTTGAT TGGTCTAGAA GTTGAGCATA TTGATGATCG GAACCTGTGT 421 TGTGGAACTC CGCCTGAATG CGAATGGAAA GCACAAGCAG GTAATGTTTG TGTGGCATCA 481 TTTGATTGGA GCTGCAGTGG AATCTGCAAA TCAGTCGAAA GAATCAAGCA AGTACACGCT Predicted gene structure (within gDNA segment 77066 to 79706): Exon 1 77666 77777 ( 112 n); cDNA 1 112 ( 112 n); score: 1.000 Intron 1 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 77889 77976 ( 88 n); cDNA 113 200 ( 88 n); score: 1.000 Intron 2 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 78085 78210 ( 126 n); cDNA 201 326 ( 126 n); score: 1.000 Intron 3 78211 78796 ( 586 n); Pd: 0.999 (s: 1.00), Pa: 0.963 (s: 1.00) Exon 4 78797 78906 ( 110 n); cDNA 327 436 ( 110 n); score: 1.000 Intron 4 78907 78992 ( 86 n); Pd: 0.991 (s: 1.00), Pa: 0.511 (s: 1.00) Exon 5 78993 79096 ( 104 n); cDNA 437 540 ( 104 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E238286+ 1.000 540 1.000 C PGS_C08HBa0037O11.1+_SGN-E238286+ (77666 77777,77889 77976,78085 78210,78797 78906,78993 79096) Alignment (genomic DNA sequence = upper lines): GAAGGCTATC ATGAGTTAAC TGCAAAAACG AAAGCTTTCT TCTCCCTTGC AGTTGCGAAA 77725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCTATC ATGAGTTAAC TGCAAAAACG AAAGCTTTCT TCTCCCTTGC AGTTGCGAAA 60 TGGGATGCTG AGTTCTATGT GAAGATTGAT GATGATGTTC ATGTCAATTT AGGTACATCT 77785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGGGATGCTG AGTTCTATGT GAAGATTGAT GATGATGTTC ATGTCAATTT AG........ 112 CCCTTTTTTT CTTGCCATAT GTACATTATA GTTCCGGACA ACTGAAAGCT GATGATTTTC 77845 .......... .......... .......... .......... .......... .......... 112 ACTTATTTGG AAATTAATAG TTGAACACAC CATGGTATTG TAGGTACACT AGCTGCAACT 77905 ||||||| |||||||||| .......... .......... .......... .......... ...GTACACT AGCTGCAACT 129 CTTGCCAGGC ACAGGTTGAA ACCCAGGGTG TATATAGGAT GCATGAAATC TGGACCAGTT 77965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCCAGGC ACAGGTTGAA ACCCAGGGTG TATATAGGAT GCATGAAATC TGGACCAGTT 189 CTTTATCAAA AGTAACTTCT GTGAAGCTAT TCTGGCCAGC TGAATTAACT ATAAATTTTG 78025 |||||||||| | CTTTATCAAA A......... .......... .......... .......... .......... 200 AAGTTCAAAA TTTCAGGATT TTTTATTTAC TAGTATCTTT TCCATTTTTT CCTTGATAGG 78085 | .......... .......... .......... .......... .......... .........G 201 AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG AGACGGGGAA TAAGTACTTC 78145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG AGACGGGGAA TAAGTACTTC 261 CGACATGCAA CTGGACAGAT ATACGCCATC TCGAAAGAGT TGGCAACATA TGTTGCCAAC 78205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACATGCAA CTGGACAGAT ATACGCCATC TCGAAAGAGT TGGCAACATA TGTTGCCAAC 321 AACAGGTGAG ATTTTTGTTC ATACTAGGCT AAATGCTCTC TTGCTGTAGC ATTCTATTTT 78265 ||||| AACAG..... .......... .......... .......... .......... .......... 326 GAACATGTTA CCTTTGTAGA ATATGATGTA TGCTGATTGT AGTTTTGAAG TTCTTTTGCG 78325 .......... .......... .......... .......... .......... .......... 326 GTTGGAATTG TTTATGCAAA TGATAACAAG GAAACATACA CTTGAAATTG GGGAAAATGG 78385 .......... .......... .......... .......... .......... .......... 326 ACATTCCTGC TCACTCACTA ACAGCCACTC CATCCAAAAT TAGTAGATCA TTTTTTACAC 78445 .......... .......... .......... .......... .......... .......... 326 GCATATAAAG ATATCATAAA TAAGAAGCTA ATTTTACTAA TTCACCTCTT AAAAAACTTT 78505 .......... .......... .......... .......... .......... .......... 326 TTTGAGAATT TTACAAATAG ATGCAAACAG TGTCAAAAAG AATTAATTGC AAGGCTAATA 78565 .......... .......... .......... .......... .......... .......... 326 TATGAAAAAA ATTAATTAAT GATTTCTTGA TTTAGTAAGA TGGACAACCA ATATGGGAGA 78625 .......... .......... .......... .......... .......... .......... 326 ACTATTTTAA ATAAGATAAT CAACTAATAT GGGATAGAAG GGTATAACAG ATTTATCTAG 78685 .......... .......... .......... .......... .......... .......... 326 ATTGCGGGTT GCTCCTGTTT CAAACTTTCA GTTCTCTAGT ATAATGCCAC TAATCAGGAA 78745 .......... .......... .......... .......... .......... .......... 326 GTGGATATGA ATGCTTGTCC ATCTCATAGT GTGTACCGTG GTGATTTTCA GACCTATTCT 78805 ||||||||| .......... .......... .......... .......... .......... .ACCTATTCT 335 GCATAAGTAT GCTAATGAAG ATGTGTCACT CGGGGCATGG TTGATTGGTC TAGAAGTTGA 78865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATAAGTAT GCTAATGAAG ATGTGTCACT CGGGGCATGG TTGATTGGTC TAGAAGTTGA 395 GCATATTGAT GATCGGAACC TGTGTTGTGG AACTCCGCCT GGTTAGCACT CCCTAAATAT 78925 |||||||||| |||||||||| |||||||||| |||||||||| | GCATATTGAT GATCGGAACC TGTGTTGTGG AACTCCGCCT G......... .......... 436 TTGTCATTTA TCTTAGATAT CTTAAAATCT CAGTACCTAA AGTCTTTTAA ACCCTCCGCT 78985 .......... .......... .......... .......... .......... .......... 436 GTGACAGAAT GCGAATGGAA AGCACAAGCA GGTAATGTTT GTGTGGCATC ATTTGATTGG 79045 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AAT GCGAATGGAA AGCACAAGCA GGTAATGTTT GTGTGGCATC ATTTGATTGG 489 AGCTGCAGTG GAATCTGCAA ATCAGTCGAA AGAATCAAGC AAGTACACGC T 79096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AGCTGCAGTG GAATCTGCAA ATCAGTCGAA AGAATCAAGC AAGTACACGC T 540 hqPGS_C08HBa0037O11.1+_SGN-E238286+ (77666 77777,77889 77976,78085 78210,78797 78906,78993 79096) ******************************************************************************** EST sequence 63 +strand 411 n (File: SGN-E233727+) 1 GAAGGCTATC ATGAGTTAAC TGCAAAAACG AAAGCTTTCT TCTCCCTTGC AGTTGCGAAA 61 TGGGATGCTG AGTTCTATGT GAAGATTGAT GATGATGTTC ATGTCAATTT AGGTACACTA 121 GCTGCAACTC TTGCCAGGCA CAGGTTGAAA CCCAGGGTGT ATATAGGATG CATGAAATCT 181 GGACCAGTTC TTTATCAAAA GAGTGTTAAG TACCATGAAC CTGAGTTCTG GAAATTTGGG 241 GAGACGGGGA ATAAGTACTT CCGACATGCA ACTGGACAGA TATACGCCAT CTCGAAAGAG 301 TTGGCAACAT ATGTTGCCAA CAACAGACCT ATTCTGCATA AGTATGCTAA TGAAGATGTG 361 TCACTCGGGG CATGGTTGAT TGGTCTAGAA GTTGAGCATA TTGATGATCG G Predicted gene structure (within gDNA segment 77066 to 79491): Exon 1 77666 77777 ( 112 n); cDNA 1 112 ( 112 n); score: 1.000 Intron 1 77778 77888 ( 111 n); Pd: 0.998 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 2 77889 77976 ( 88 n); cDNA 113 200 ( 88 n); score: 1.000 Intron 2 77977 78084 ( 108 n); Pd: 0.024 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 78085 78210 ( 126 n); cDNA 201 326 ( 126 n); score: 1.000 Intron 3 78211 78796 ( 586 n); Pd: 0.999 (s: 1.00), Pa: 0.963 (s: 1.00) Exon 4 78797 78881 ( 85 n); cDNA 327 411 ( 85 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E233727+ 1.000 411 1.000 C PGS_C08HBa0037O11.1+_SGN-E233727+ (77666 77777,77889 77976,78085 78210,78797 78881) Alignment (genomic DNA sequence = upper lines): GAAGGCTATC ATGAGTTAAC TGCAAAAACG AAAGCTTTCT TCTCCCTTGC AGTTGCGAAA 77725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCTATC ATGAGTTAAC TGCAAAAACG AAAGCTTTCT TCTCCCTTGC AGTTGCGAAA 60 TGGGATGCTG AGTTCTATGT GAAGATTGAT GATGATGTTC ATGTCAATTT AGGTACATCT 77785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGGGATGCTG AGTTCTATGT GAAGATTGAT GATGATGTTC ATGTCAATTT AG........ 112 CCCTTTTTTT CTTGCCATAT GTACATTATA GTTCCGGACA ACTGAAAGCT GATGATTTTC 77845 .......... .......... .......... .......... .......... .......... 112 ACTTATTTGG AAATTAATAG TTGAACACAC CATGGTATTG TAGGTACACT AGCTGCAACT 77905 ||||||| |||||||||| .......... .......... .......... .......... ...GTACACT AGCTGCAACT 129 CTTGCCAGGC ACAGGTTGAA ACCCAGGGTG TATATAGGAT GCATGAAATC TGGACCAGTT 77965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCCAGGC ACAGGTTGAA ACCCAGGGTG TATATAGGAT GCATGAAATC TGGACCAGTT 189 CTTTATCAAA AGTAACTTCT GTGAAGCTAT TCTGGCCAGC TGAATTAACT ATAAATTTTG 78025 |||||||||| | CTTTATCAAA A......... .......... .......... .......... .......... 200 AAGTTCAAAA TTTCAGGATT TTTTATTTAC TAGTATCTTT TCCATTTTTT CCTTGATAGG 78085 | .......... .......... .......... .......... .......... .........G 201 AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG AGACGGGGAA TAAGTACTTC 78145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTAAGT ACCATGAACC TGAGTTCTGG AAATTTGGGG AGACGGGGAA TAAGTACTTC 261 CGACATGCAA CTGGACAGAT ATACGCCATC TCGAAAGAGT TGGCAACATA TGTTGCCAAC 78205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACATGCAA CTGGACAGAT ATACGCCATC TCGAAAGAGT TGGCAACATA TGTTGCCAAC 321 AACAGGTGAG ATTTTTGTTC ATACTAGGCT AAATGCTCTC TTGCTGTAGC ATTCTATTTT 78265 ||||| AACAG..... .......... .......... .......... .......... .......... 326 GAACATGTTA CCTTTGTAGA ATATGATGTA TGCTGATTGT AGTTTTGAAG TTCTTTTGCG 78325 .......... .......... .......... .......... .......... .......... 326 GTTGGAATTG TTTATGCAAA TGATAACAAG GAAACATACA CTTGAAATTG GGGAAAATGG 78385 .......... .......... .......... .......... .......... .......... 326 ACATTCCTGC TCACTCACTA ACAGCCACTC CATCCAAAAT TAGTAGATCA TTTTTTACAC 78445 .......... .......... .......... .......... .......... .......... 326 GCATATAAAG ATATCATAAA TAAGAAGCTA ATTTTACTAA TTCACCTCTT AAAAAACTTT 78505 .......... .......... .......... .......... .......... .......... 326 TTTGAGAATT TTACAAATAG ATGCAAACAG TGTCAAAAAG AATTAATTGC AAGGCTAATA 78565 .......... .......... .......... .......... .......... .......... 326 TATGAAAAAA ATTAATTAAT GATTTCTTGA TTTAGTAAGA TGGACAACCA ATATGGGAGA 78625 .......... .......... .......... .......... .......... .......... 326 ACTATTTTAA ATAAGATAAT CAACTAATAT GGGATAGAAG GGTATAACAG ATTTATCTAG 78685 .......... .......... .......... .......... .......... .......... 326 ATTGCGGGTT GCTCCTGTTT CAAACTTTCA GTTCTCTAGT ATAATGCCAC TAATCAGGAA 78745 .......... .......... .......... .......... .......... .......... 326 GTGGATATGA ATGCTTGTCC ATCTCATAGT GTGTACCGTG GTGATTTTCA GACCTATTCT 78805 ||||||||| .......... .......... .......... .......... .......... .ACCTATTCT 335 GCATAAGTAT GCTAATGAAG ATGTGTCACT CGGGGCATGG TTGATTGGTC TAGAAGTTGA 78865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATAAGTAT GCTAATGAAG ATGTGTCACT CGGGGCATGG TTGATTGGTC TAGAAGTTGA 395 GCATATTGAT GATCGG 78881 |||||||||| |||||| GCATATTGAT GATCGG 411 hqPGS_C08HBa0037O11.1+_SGN-E233727+ (77666 77777,77889 77976,78085 78210,78797 78881) ******************************************************************************** EST sequence 3 +strand 230 n (File: SGN-E239955+) 1 GGCATGGTTG ATTGGTCTAG AAGTTGAGCA TATTGATGAT CGGAACCTGT GTTGTGGAAC 61 TCCGCCTGAA TGCGAATGGA AAGCACAAGC AGGTAATGTT TGTGTGGCAT CATTTGATTG 121 GAGCTGCAGT GGAATCTGCA AATCAGTCGA AAGAATCAAG CAAGTACACG CTAAATGCAG 181 CGAAAGTCCT GCTACTCTAT GGGGTGCTCT TATTTAGTCA TCTTTTTCAT Predicted gene structure (within gDNA segment 78239 to 79764): Exon 1 78839 78906 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 78907 78992 ( 86 n); Pd: 0.991 (s: 1.00), Pa: 0.511 (s: 1.00) Exon 2 78993 79154 ( 162 n); cDNA 69 230 ( 162 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E239955+ 1.000 230 1.000 C PGS_C08HBa0037O11.1+_SGN-E239955+ (78839 78906,78993 79154) Alignment (genomic DNA sequence = upper lines): GGCATGGTTG ATTGGTCTAG AAGTTGAGCA TATTGATGAT CGGAACCTGT GTTGTGGAAC 78898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGGTTG ATTGGTCTAG AAGTTGAGCA TATTGATGAT CGGAACCTGT GTTGTGGAAC 60 TCCGCCTGGT TAGCACTCCC TAAATATTTG TCATTTATCT TAGATATCTT AAAATCTCAG 78958 |||||||| TCCGCCTG.. .......... .......... .......... .......... .......... 68 TACCTAAAGT CTTTTAAACC CTCCGCTGTG ACAGAATGCG AATGGAAAGC ACAAGCAGGT 79018 |||||| |||||||||| |||||||||| .......... .......... .......... ....AATGCG AATGGAAAGC ACAAGCAGGT 94 AATGTTTGTG TGGCATCATT TGATTGGAGC TGCAGTGGAA TCTGCAAATC AGTCGAAAGA 79078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTTGTG TGGCATCATT TGATTGGAGC TGCAGTGGAA TCTGCAAATC AGTCGAAAGA 154 ATCAAGCAAG TACACGCTAA ATGCAGCGAA AGTCCTGCTA CTCTATGGGG TGCTCTTATT 79138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAGCAAG TACACGCTAA ATGCAGCGAA AGTCCTGCTA CTCTATGGGG TGCTCTTATT 214 TAGTCATCTT TTTCAT 79154 |||||||||| |||||| TAGTCATCTT TTTCAT 230 hqPGS_C08HBa0037O11.1+_SGN-E239955+ (78839 78906,78993 79154) ******************************************************************************** EST sequence 127 -strand 499 n (File: SGN-E278593-) 1 GTGTGGCATC ATTTGATTGG AGCTGCAGTG GAATCTGCAA ATCAGTCGAA AGAATCAAGC 61 AAGTACACGC TAAATGCAGC GAAAGTCCTG CTACTCTATG GGGTGCTCTT ATTTAGTCAT 121 CTTTTTCATC ATCAGAAGCT ATTCTTCAAA CATGATACCT ATCCTCTCAA CTTGAAGAGA 181 AGTAAATTGT TGATCATTTA CGAGCCGGAA GAGATCACCC AATGCTACAA AAGATAGTTG 241 CAGATCTTGA TGGAGAACTT AGCTCTGTTG TTTATACATA TCGCTAGCTA GAAACTGTTG 301 ACAAAATGAG AGCATAAATA GTAGGAAGAG TGTAGTCTTC ATTAAGTATA ATTCCATCCA 361 CACAGATTAG AGTCAGTTGG ATGTTAGAGC TATTAGATTT GTACTTCCAC AGTATACTGT 421 GGTAAATATT TTTGCCTAAT AAGAAATTTT CCTCATTTCC ACAGGCTTTT CTAAAAAGAC 481 AAACACAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 78416 to 80376): Exon 1 79026 79496 ( 471 n); cDNA 1 471 ( 471 n); score: 1.000 PPA cDNA 487 499 MATCH C08HBa0037O11.1+ SGN-E278593- 1.000 471 0.944 C PGS_C08HBa0037O11.1+_SGN-E278593- (79026 79496) Alignment (genomic DNA sequence = upper lines): GTGTGGCATC ATTTGATTGG AGCTGCAGTG GAATCTGCAA ATCAGTCGAA AGAATCAAGC 79085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTGGCATC ATTTGATTGG AGCTGCAGTG GAATCTGCAA ATCAGTCGAA AGAATCAAGC 60 AAGTACACGC TAAATGCAGC GAAAGTCCTG CTACTCTATG GGGTGCTCTT ATTTAGTCAT 79145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTACACGC TAAATGCAGC GAAAGTCCTG CTACTCTATG GGGTGCTCTT ATTTAGTCAT 120 CTTTTTCATC ATCAGAAGCT ATTCTTCAAA CATGATACCT ATCCTCTCAA CTTGAAGAGA 79205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTCATC ATCAGAAGCT ATTCTTCAAA CATGATACCT ATCCTCTCAA CTTGAAGAGA 180 AGTAAATTGT TGATCATTTA CGAGCCGGAA GAGATCACCC AATGCTACAA AAGATAGTTG 79265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAAATTGT TGATCATTTA CGAGCCGGAA GAGATCACCC AATGCTACAA AAGATAGTTG 240 CAGATCTTGA TGGAGAACTT AGCTCTGTTG TTTATACATA TCGCTAGCTA GAAACTGTTG 79325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATCTTGA TGGAGAACTT AGCTCTGTTG TTTATACATA TCGCTAGCTA GAAACTGTTG 300 ACAAAATGAG AGCATAAATA GTAGGAAGAG TGTAGTCTTC ATTAAGTATA ATTCCATCCA 79385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAATGAG AGCATAAATA GTAGGAAGAG TGTAGTCTTC ATTAAGTATA ATTCCATCCA 360 CACAGATTAG AGTCAGTTGG ATGTTAGAGC TATTAGATTT GTACTTCCAC AGTATACTGT 79445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGATTAG AGTCAGTTGG ATGTTAGAGC TATTAGATTT GTACTTCCAC AGTATACTGT 420 GGTAAATATT TTTGCCTAAT AAGAAATTTT CCTCATTTCC ACAGGCTTTT C 79496 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GGTAAATATT TTTGCCTAAT AAGAAATTTT CCTCATTTCC ACAGGCTTTT C 471 hqPGS_C08HBa0037O11.1+_SGN-E278593- (79026 79496) ******************************************************************************** EST sequence 126 -strand 423 n (File: SGN-E259864-) 1 AAAGAATCAA GCAAGTACAC GCTAAATGCA GCGAAAGTCC TGCTACTCTA TGGGGTGCTC 61 TTATTTAGTC ATCTTTTTCA TCATCAGAAG CTATTCTTCA AACATGATAC CTATCCTCTC 121 AACTTGAAGA GAAGTAAATT GTTGATCATT TACGAGCCGG AAGAGATCAC CCAATGCTAC 181 AAAAGATAGT TGCAGATCTT GATGGAGAAC TTAGCTCTGT TGTTTATACA TATCGCTAGC 241 TAGAAACTGT TGACAAAATG AGAGCATAAA TAGTAGGAAG AGTGTAGTCT TCATTAAGTA 301 TAATTCCATC CACACAGATT AGAGTCAGTT GGATGTTAGA GCTATTAGAT TTGTACTTCC 361 ACAGTATACT GTGGTAAATA TTTTTGCCTA ATAAGAAATT TTCCTCAAAA AAAAAAAAAA 421 AAA Predicted gene structure (within gDNA segment 78464 to 80240): Exon 1 79074 79479 ( 406 n); cDNA 1 406 ( 406 n); score: 1.000 PPA cDNA 407 423 MATCH C08HBa0037O11.1+ SGN-E259864- 1.000 406 0.960 C PGS_C08HBa0037O11.1+_SGN-E259864- (79074 79479) Alignment (genomic DNA sequence = upper lines): AAAGAATCAA GCAAGTACAC GCTAAATGCA GCGAAAGTCC TGCTACTCTA TGGGGTGCTC 79133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATCAA GCAAGTACAC GCTAAATGCA GCGAAAGTCC TGCTACTCTA TGGGGTGCTC 60 TTATTTAGTC ATCTTTTTCA TCATCAGAAG CTATTCTTCA AACATGATAC CTATCCTCTC 79193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTTAGTC ATCTTTTTCA TCATCAGAAG CTATTCTTCA AACATGATAC CTATCCTCTC 120 AACTTGAAGA GAAGTAAATT GTTGATCATT TACGAGCCGG AAGAGATCAC CCAATGCTAC 79253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGAAGA GAAGTAAATT GTTGATCATT TACGAGCCGG AAGAGATCAC CCAATGCTAC 180 AAAAGATAGT TGCAGATCTT GATGGAGAAC TTAGCTCTGT TGTTTATACA TATCGCTAGC 79313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGATAGT TGCAGATCTT GATGGAGAAC TTAGCTCTGT TGTTTATACA TATCGCTAGC 240 TAGAAACTGT TGACAAAATG AGAGCATAAA TAGTAGGAAG AGTGTAGTCT TCATTAAGTA 79373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAACTGT TGACAAAATG AGAGCATAAA TAGTAGGAAG AGTGTAGTCT TCATTAAGTA 300 TAATTCCATC CACACAGATT AGAGTCAGTT GGATGTTAGA GCTATTAGAT TTGTACTTCC 79433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTCCATC CACACAGATT AGAGTCAGTT GGATGTTAGA GCTATTAGAT TTGTACTTCC 360 ACAGTATACT GTGGTAAATA TTTTTGCCTA ATAAGAAATT TTCCTC 79479 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACAGTATACT GTGGTAAATA TTTTTGCCTA ATAAGAAATT TTCCTC 406 hqPGS_C08HBa0037O11.1+_SGN-E259864- (79074 79479) ******************************************************************************** EST sequence 105 -strand 567 n (File: SGN-E539593-) 1 GAAGTGTTAA CGACAAATCT TAAAGTGATG GAAAATAAAG CACAAATAAA GTACGGCATG 61 ATACATATCT AATCTTGGTT TCAAATTTTA ACTTTGACCT CCAACGTTCA TAGTAAACAA 121 ACAAACACTT CAATTATCTA ACCCTTTAAT AAATAAACAC GCGAGTCGTA CCTGGCAAAC 181 ATGTAATGTG CATGTATTTT GTGCGAGTTA GGAGTAGTAA TTTTTGAGGT CCACAATGGT 241 AAAAAAATGC TGAAATAACA ACTCCACCAT TAATGAATCC CTTTTATATA TTTTTTTATA 301 TTTCCAAATC AAAATTCATT TAAATTTTTT TTAAATTCTA AAATGGACGC ATAAAATATT 361 TAATTAGTTG GCAGTCATTG AGTGGCTCAC TAATATACGT GGGAGCATTT GCATTTCACT 421 CTCTTTGTCT CCAAAAATCG TGTGTTTATT TATTTAATGG TATGATAGTT TAAGTGTCTA 481 TTTGTGCACT ATTAAAGTTG GAGGTCAAAG TCAAAATTTG AAGTCAAGTT TAGGGTCCAA 541 TATATGTATT ATGCCTATAA AATATGA Predicted gene structure (within gDNA segment 81234 to 87506): Exon 1 85067 85554 ( 488 n); cDNA 70 556 ( 487 n); score: 0.784 MATCH C08HBa0037O11.1+ SGN-E539593- 0.784 488 0.861 C PGS_C08HBa0037O11.1+_SGN-E539593- (85067 85554) Alignment (genomic DNA sequence = upper lines): TAAACATGAT TTCAAATTTT AACTTTAATA TTAAATTTTC ATAGTGCACA AGTAGACACT 85126 ||| | || | |||||||||| |||||| | | || ||| ||||| ||| | | ||||| TAATCTTGGT TTCAAATTTT AACTTTGACC TCCAACGTTC ATAGTAAACA AACAAACACT 129 TTAATTATCC AATTTTTTAA TAAATGAACA TGCGAGCCTT ACCTAGCAAA ACGCGTGATG 85186 | ||||||| || ||||| ||||| |||| ||||| | | |||| || || || || ||| TCAATTATCT AACCCTTTAA TAAATAAACA CGCGAGTCGT ACCTGGC-AA ACATGTAATG 188 TGCGCATATT TTGCGCGAGT TAGGA-T--T AAATTTTGAT GCCCACAATA GTAAAAAAAA 85243 ||| |||| ||| |||||| ||||| | | || |||||| | ||||||| || ||||| TGCATGTATT TTGTGCGAGT TAGGAGTAGT AATTTTTGAG GTCCACAATG GT---AAAAA 245 AATACTGAAA TGACAACTCT ACCCTTGATG AATCCGTTTT ATATATTGTA CATTTTTATA 85303 ||| |||||| | ||||||| ||| || ||| ||||| |||| ||||| | | |||||||| AATGCTGAAA TAACAACTCC ACCATTAATG AATCCCTTTT ATATA-T-T- --TTTTTATA 300 TTTTCAAATC AAAATCTCAT TT-TATTTTT TTT-AATTCT GAAATGGACG TGTAAAATAT 85361 ||| |||||| ||||| |||| || |||||| ||| |||||| ||||||||| |||||||| TTTCCAAATC AAAAT-TCAT TTAAATTTTT TTTAAATTCT AAAATGGACG CATAAAATAT 359 TTAATTAGTT GGCATCCATT GA----CTTA CTAATATACG TGGGAGCATT TGCATTTCAT 85417 |||||||||| |||| |||| || || | |||||||||| |||||||||| ||||||||| TTAATTAGTT GGCAGTCATT GAGTGGCTCA CTAATATACG TGGGAGCATT TGCATTTCAC 419 TCTCTTTGGC TCCAAAAGTG ATGTGTTTAT TTATTTAAAA GTAGGATAGT TAAAGTGCAT 85477 |||||||| | ||||||| | ||||||||| |||||||| ||| |||||| | ||||| | TCTCTTTGTC TCCAAAAATC GTGTGTTTAT TTATTTAATG GTATGATAGT TTAAGTGTCT 479 GTTTGTACAC TATAAAAGTT GGAGGTTAAA GTTAAAATTT GAAGTCAAAT TTGAAATCCA 85537 ||||| ||| ||| |||||| |||||| ||| || ||||||| |||||||| | || |||| ATTTGTGCAC TATTAAAGTT GGAGGTCAAA GTCAAAATTT GAAGTCAAGT TTAGGGTCCA 539 ATATATGTAA TATGTCT 85554 ||||||||| |||| || ATATATGTAT TATGCCT 556 hqPGS_C08HBa0037O11.1+_SGN-E539593- (85067 85554) ******************************************************************************** EST sequence 87 -strand 641 n (File: SGN-E301078-) 1 ATATGTAAAT TGTAATGAAT AATAAAATGT AACAATTACA AAATTCAAAG ACATACGACA 61 ATAAATCATT CATAGAAAAC TAAATTAAGA AGTCTAACAG AGTGAAAAAA AAGACTAAAA 121 GAAACAGAAT ATTTAAGAAA AAAATACAAT ATAGACATTA TTCTTATAAG ATTGATGTAT 181 ATATAGATGA AAAAATAAGT AAAAATTAGT ACATAACTCT CTGAGTTTTT ATCGACTCCT 241 TTCATATCCT ATCAAAATTC AAGAGTTTTC AGCATCTATT TTTACTATAG AATAAAAATA 301 ATAATCTTGA TAGGGGTTTC ATGAGATAAA GAAGTTGAAT TTATACAAAT AGAATAGAAG 361 GAATACCAAA AGATATCTTA AAGTTTAATT TAAATATTTG GAGGTTATGA ATATGAAAAG 421 ATGATAGTTA TGAATATTAA GAGTGTTGTG CGAAATTTGA GATAATACGA GAAAATATAT 481 AAACGCGAAA ACCAAGACAC CAGTTTTACG TGGTTCACCA ATAAATTGGC TACGTCCACG 541 GGAAGAGAGG GAGCAATTTT ATTATGGAGA GGCAAAAACA GAATTACAGA ATAGGGTTTG 601 CCATAGCGTC TATATATAGT GCTAAGCTAC ACCCTAAAAG G Predicted gene structure (within gDNA segment 94191 to 86506): Exon 1 93445 93399 ( 47 n); cDNA 239 283 ( 45 n); score: 0.702 Intron 1 93398 89906 (3493 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.66) Exon 2 89905 89854 ( 52 n); cDNA 284 331 ( 48 n); score: 0.673 Intron 2 89853 89602 ( 252 n); Pd: 0.000 (s: 0.66), Pa: 0.000 (s: 0.65) Exon 3 89601 89554 ( 48 n); cDNA 332 377 ( 46 n); score: 0.646 Intron 3 89553 89193 ( 361 n); Pd: 0.000 (s: 0.65), Pa: 0.604 (s: 0) Exon 4 89192 89171 ( 22 n); cDNA 378 398 ( 21 n); score: 0.636 Intron 4 89170 88862 ( 309 n); Pd: 0.560 (s: 0), Pa: 0.000 (s: 0.68) Exon 5 88861 88823 ( 39 n); cDNA 399 438 ( 40 n); score: 0.679 Intron 5 88822 87410 (1413 n); Pd: 0.000 (s: 0.68), Pa: 0.152 (s: 0.77) Exon 6 87409 87205 ( 205 n); cDNA 439 641 ( 203 n); score: 0.917 MATCH C08HBa0037O11.1- SGN-E301078- 0.868 413 0.644 C PGS_C08HBa0037O11.1-_SGN-E301078- (93445 93399,89905 89854,89601 89554,89192 89171,88861 88823,87409 87205) Alignment (genomic DNA sequence = upper lines): CTATCATATG TATATAGAAA TTCAATACTT TTGCTTGTTC TATTCTTATA AAATGGAAAG 93386 || |||||| ||| ||| ||||| | || || | || |||| || CTTTCATATC -CTATCAAAA TTCAAGAGTT TT-CAGCATC TATTTTT... .......... 283 AATATTAACA AATTGTAATC TTTCCATGTC CGGTGATAAA TAAACTTGAA CGTTCTCTCT 93326 .......... .......... .......... .......... .......... .......... 283 TCCACGTGAA CCAGCTAACC CTTTCATCAA CACGGAAATT GTTAAGGAAG TGGCTGGCTC 93266 .......... .......... .......... .......... .......... .......... 283 TCCAGATAAG TAGCATTAAA ATTATTGCAT TTAACAAATG GTCGTACAAA CACCCACGAG 93206 .......... .......... .......... .......... .......... .......... 283 TGGGATCATG TTGAGATGAC GATTAACTGC ATATCTATTC TATCCTTTCC AAAAGGCATA 93146 .......... .......... .......... .......... .......... .......... 283 CACATTGGAG ATAAGTCCGC TTTCTTAATG TTATCTGACT AACCTCTAGC CTATAAATTT 93086 .......... .......... .......... .......... .......... .......... 283 TTTTGAAGTG GCAACATAAC AATGGTTGTT GGGCTTAACA AGGTTTAACC ACTACAAATA 93026 .......... .......... .......... .......... .......... .......... 283 ACTACAGGCA AGTCGAACTG TAGCTCTACA TCACAGACTT GAAGACTTCT AAGTTCACAA 92966 .......... .......... .......... .......... .......... .......... 283 AAATAATTAC TCCCTCCATC CTAATTTATG TGGCATACTT CTATGTTTAG TCTATTCAAA 92906 .......... .......... .......... .......... .......... .......... 283 AAAGAATGTC ATACTCCTTA TTTAGAAACA ATTTAACTTT AACTACTATT TTTTACCATT 92846 .......... .......... .......... .......... .......... .......... 283 AATGAGACAA TTTATAGCGA CACAAATGTC TATAGATTGT TTTACAACAC AAAATCTTTT 92786 .......... .......... .......... .......... .......... .......... 283 TTAACTCCAT GCTCAATAAC AAATCGCCAC AAAAATTGGG ACAGAAGGAG AATTGTTTTG 92726 .......... .......... .......... .......... .......... .......... 283 GAAGTTTCTA GTCGAAGAAG TGCGACAGCC TTCTAGTATA TCGTCACAAA AACTCCACTT 92666 .......... .......... .......... .......... .......... .......... 283 GTTAATGTCA GTCAAAGGAC TTCATGTTTT CCTCCTTTTC AACAATGTTA ACTTCCATCT 92606 .......... .......... .......... .......... .......... .......... 283 ACCTACCACC CTATGAGGTA AGGAAATAAA ATTATTGTTA GGATGTCCTT TATATGTTGG 92546 .......... .......... .......... .......... .......... .......... 283 AAGCTAGACA GTGATTATAA GCAGTCCCTA CAGAAAGGTT CAAGAAACAC ATCTTCCCTT 92486 .......... .......... .......... .......... .......... .......... 283 TCAATTCTTT CCGTAGAACT TGACCTGAAA CGATTCAAAC CAGAGGAAAA TTTGGGAATC 92426 .......... .......... .......... .......... .......... .......... 283 CTCAAAGACT GGTCTTTCCA GAATGCAGAT AGAATCAGCA TGACAGAGTG TATGTACTAC 92366 .......... .......... .......... .......... .......... .......... 283 ACCTTTATAT AAAGGGCCAA ATAGAGCACA ACATTAAACT AGTACCCAAA CAGTTCCCTC 92306 .......... .......... .......... .......... .......... .......... 283 TAGCTCTATG CAATTCAAAA TTTAAAGGCA TAACACACTC ACACTTAAGC ACTGAAAAGT 92246 .......... .......... .......... .......... .......... .......... 283 GGTGAACTGC TAGGAGATAT TCAAAAATGA ATATGATGTC TTCGTATGCA TCTTCCTCTA 92186 .......... .......... .......... .......... .......... .......... 283 GCGGATGAAG TTGAATGGTT TCAAGTTCTA TGTTTACTCA CAAAAATGAC ACACTTGCTT 92126 .......... .......... .......... .......... .......... .......... 283 TAGGTAGAGC GGAAGTCTAG AAATCATATT TTCTAGCTGA CAAAGTGGAA TGGCTTCAAG 92066 .......... .......... .......... .......... .......... .......... 283 TGGCAGGTTT ACTAAGAAAA TGGACAAAGT AGGTATAGTT AGAGCTAACT CACTCAAGTC 92006 .......... .......... .......... .......... .......... .......... 283 TAGCAAGCAT ATAGCAAAAG GATAAACAAT ACATCAAAAA GGTGGCAGAA CTGATAACAC 91946 .......... .......... .......... .......... .......... .......... 283 TAATTCCTTG ACATACCCTT AAACTATAGA TATACATGTT CCAACCCTAA TTAATGATTA 91886 .......... .......... .......... .......... .......... .......... 283 AACATATCAT CAAGTATCTC CTCTACATTT TCTAAACCGG CAACTTAGCT TAATATCCTA 91826 .......... .......... .......... .......... .......... .......... 283 GATTGACCAA TCAAAAGCTC CCCAGAAACT GCATGTGCAT TCCAACTTCA TGGTCTTGGC 91766 .......... .......... .......... .......... .......... .......... 283 ATCTACTCCA ATTTTTGTGT TAGTTCAGAT CCTTGGTAAT TTCTTTTGGA GCCTCAACTC 91706 .......... .......... .......... .......... .......... .......... 283 AAATTTGATC CAACGTCACA AACCTTGTTT ATTCAACCCC CCGCACATTC AACCCCCCGC 91646 .......... .......... .......... .......... .......... .......... 283 ACACGGGCGG ATGACAAAAA GTTATAAATA GGGAAAACCC AAAAACTAAG ATTGACAACC 91586 .......... .......... .......... .......... .......... .......... 283 ATCCTTCTTA AAAGCTCATT TGCAAGAAAC CTTGCCAGTT TGATATTTGG TTAGGAAATA 91526 .......... .......... .......... .......... .......... .......... 283 GTAAACGTTT TTCTTACTAG TTACTGGTAT TATTTTAATC AAGAAAAACA AAAAAAAGGG 91466 .......... .......... .......... .......... .......... .......... 283 CAACATGAAG GTGCTACAAC TTATTAGTGC AAATAATTCA TTTTTTCAAC AAAAGACAAT 91406 .......... .......... .......... .......... .......... .......... 283 GCTCTTGCAC AACCTATAAT CTTAACATCA AAGCAACAGC AAGTTCAATC ATCTAGCTGG 91346 .......... .......... .......... .......... .......... .......... 283 TAAAGGAACG CACGGAAGTA CACTAATAGC ACTGAGTTCA CTCATTATGC AAGTCAACGA 91286 .......... .......... .......... .......... .......... .......... 283 GAAAACTGAA AACAATTCCT TACACAAGCC AGCACATTAA GATCTAAGAA AACAAAATAA 91226 .......... .......... .......... .......... .......... .......... 283 CCACCAAATT GCAAAACAAG ATAAAACATT TTCAACAAAG CACAAACCTG CATAAAATTG 91166 .......... .......... .......... .......... .......... .......... 283 TAACGTTCTC TTCCAATTGA TTCATTTTCT GCAATGGCAA AATACGCCAA CATTGGATAG 91106 .......... .......... .......... .......... .......... .......... 283 TGCCCAACAT AGGACGCATA GCTATCGCGC TGAATGTTTA CCGCCCACTC ACTAAACCAA 91046 .......... .......... .......... .......... .......... .......... 283 ATACAAAACA TCCATAACCT CAGTTATAAT TGTTTGACGA TAAATGTCAA ACAGAGACAA 90986 .......... .......... .......... .......... .......... .......... 283 TAAATAAATA TATAAATTAG ATCAATTTCA AAAAATGCAA AAGTAGGCAA CTTACAATCT 90926 .......... .......... .......... .......... .......... .......... 283 AGTCAAATCG GCATGTCCTG TTCCAACATA TTTAGCTTGT AAGTGCTCAA GCTGGGAGTT 90866 .......... .......... .......... .......... .......... .......... 283 GATGTTGAAC CTGTCACTAG CCTGTATACA CTCATTAATC AACTGTACAT TCTACAAACA 90806 .......... .......... .......... .......... .......... .......... 283 GAGAAAAATT ACAGTAACAT GTACACTGAG CTACACAAAA TAAATTAGGG TTATGGGAAG 90746 .......... .......... .......... .......... .......... .......... 283 AAAACATCGG GTGTTCGTGG AGATCTGGAA GATGATAATC AAATTTGAAT ATGAAGGTAA 90686 .......... .......... .......... .......... .......... .......... 283 AAATAAAACT TCACAAACAT ACATAAGTTG CACATGAAAT TAAAAATCAC GAAAGGACAT 90626 .......... .......... .......... .......... .......... .......... 283 AAAAATCAAA ATTGAAAACA TATACATCAA AGAGGGAAAA TATATTAGGG TTTTGGTTAA 90566 .......... .......... .......... .......... .......... .......... 283 GAAAGAGGAG CGAAATTGAT CGAACAAGGA GATGATAATC AAAATTGGTG TAAATTTACC 90506 .......... .......... .......... .......... .......... .......... 283 TGCATTTTTT TTTTTGTACA GTGAGAAGAT TGAAGGAGAG GAGATGAATA AAGCAGAGCG 90446 .......... .......... .......... .......... .......... .......... 283 CGATATGGAC TAAAATATAC TGTCGAAGAC GGGGAGTGAA GCGGGTCACG CTTTCGGGTA 90386 .......... .......... .......... .......... .......... .......... 283 CATACACAAG AAGCTTACGT AAATATATTA TAATTAAAAA ATATTTATTA TTTATTATAA 90326 .......... .......... .......... .......... .......... .......... 283 TAATATTTTT TTTATTTAAT CACTTTTAGT TTAGCTAAAT ACAAGTTTAA TTCATATTAC 90266 .......... .......... .......... .......... .......... .......... 283 AAAGAATAAT TTTTTATTCA TATATAATAT AAATTTTAGT GATAGATAAT TCATTTATCA 90206 .......... .......... .......... .......... .......... .......... 283 CACATTTTAA TACATTTATA ATATAATGTG TCAAATTTTA CCAAACAAAT AGAATATATT 90146 .......... .......... .......... .......... .......... .......... 283 TTAAAAACAA TTATAATTCA TATATATTAG ATACATAATT TACTTTTAAT ACATATTGCA 90086 .......... .......... .......... .......... .......... .......... 283 GATTTAACAT AATATTATTA TAAATGGTAA TAAATAAAAA ATATTGCTAA AATAAGTAAT 90026 .......... .......... .......... .......... .......... .......... 283 TATTTATCAA AATGTACCAA TTTATGTAAT TTTTCTTACA TTAATATATG AAATATCGCC 89966 .......... .......... .......... .......... .......... .......... 283 AATATAATTA CAGAAATACT CCCTCCCGCC ACTAAAAAAA TAGCCTAATT ATTTTTCATA 89906 .......... .......... .......... .......... .......... .......... 283 ACTATAGTTT GATAATAACA ATTCTTAGCT ACATGTTATA GGGAGGAGAA AGGTGAGCGA 89846 ||||||| | | ||||| | | |||| | | | ||| | || || || || ACTATAGAAT AAAAATAATA A-TCTT-GAT AGGGGTT-TC ATGA-GATAA AG........ 331 GATTGGGAGA GAGAGGAGAG AGGCGAGAGA GAGGGCAAAA AGTGGGAGAG AGCTGAATTG 89786 .......... .......... .......... .......... .......... .......... 331 TATATGTATA TTGGATAGAT AAATGTATAC TATACATATG TATTTGTATA TATGACAAGC 89726 .......... .......... .......... .......... .......... .......... 331 GAGATTGAGA GAGAGAGGAG AGAGGCGAGC AAGATTGGGA GAGAGGCGAG CAAGATTGGG 89666 .......... .......... .......... .......... .......... .......... 331 AGAGAGGTGA GCGAGATTGG GCAGGGAGCA GAAGAGAGGT GAATTATATA TTTATATTGG 89606 .......... .......... .......... .......... .......... .......... 331 TTAGATAATT GTATATTATA CATATACATT TGTACATATA GCAAGCGAGA TTGGGAGAGA 89546 | | || | || ||||| || ||| | | | | ||| ||| || | | ....A-AGTT GAAT-TTATA CAAATAGAAT AGAAGGAATA CCAAAAGATA TC........ 377 GGCGAGCGAG ATTGAGAAAG GGAGGAGAGA AGCAAGCGAG AGTGGTCAGA GAGTGGGAGA 89486 .......... .......... .......... .......... .......... .......... 377 GAGATGAATT GTATATGATA TTGATTAAAT AATTGTATAT TATACATATG CACTTGTATA 89426 .......... .......... .......... .......... .......... .......... 377 TTCTAACGAA TTATACATAT ACAAATGTAG CTAGTTATAG AAACTCGAAA TCAGTGAACA 89366 .......... .......... .......... .......... .......... .......... 377 TAATTAATGT AATATTAGTC GTGAGTGGTG ATTATAGCAA ACTATAACTA TGATGAATAA 89306 .......... .......... .......... .......... .......... .......... 377 TTAAAAAATA TAAATTTGCT TAACCGCGTA ATTTTTCCAA AAAAAGAATG ATCTAATTTT 89246 .......... .......... .......... .......... .......... .......... 377 CTTTTTAGTC TATTTTAAAA AAAAATGAGT CTTTTTCTAT TTTTTTATAA CAGTTTAACT 89186 || || | .......... .......... .......... .......... .......... ...TTAAAGT 384 TTAACTTTCT ACCTGGCATG TTTAAGGTCA CAAAATTAAA ATATATTTTG ATATATTTGA 89126 |||| ||| | | TTAA-TTTAA ATATT..... .......... .......... .......... .......... 398 TATAACTTTA ATTTAGAACT ACAAGATTAA AATATTCTTT TTCTTTTTTA AACTTTGTTC 89066 .......... .......... .......... .......... .......... .......... 398 TAAGTCAACT AAATTATCTT TTTTTAAACG GAGAAAGAAA TAGCTTTGAT CCTTGATTAA 89006 .......... .......... .......... .......... .......... .......... 398 TGTAAAGAAA ATTTTATTTT CATGTGTGTT AATTTGAGGA TGAATGTAAC TACTATTATT 88946 .......... .......... .......... .......... .......... .......... 398 TTTCCGTAGT ATAATTGTAT CACTTTTAGG AGCCTTTGGT TGAATACTTC ATGTTATTAG 88886 .......... .......... .......... .......... .......... .......... 398 TAATTATTGT AAAATGTGTC AATGTGTAGT TTTCAAATAT GTAAA-ATCA TAATTTTGAT 88827 || || || ||||| | ||| || | || || ||| .......... .......... ....TGGAGG TTATGAATAT GAAAAGATGA TAGTTATGAA 434 TATTATTGTG AGTCAGTTGA AAAAAGAAGA CGAATATAAA TCTTACATTA AATCATAACA 88767 |||| TATT...... .......... .......... .......... .......... .......... 438 CAAGTCGCTA AAGGAAAGTA TTTAATACTA ATAAAAAAAA TATATATATA TATATATATA 88707 .......... .......... .......... .......... .......... .......... 438 TAAATAAAAT AATAATTTAT TTAATCCAGA AATATTTATT ACTAATATAA TAAAAATAAT 88647 .......... .......... .......... .......... .......... .......... 438 AATTTATTTA ATCCTAATCC TAATTCCTAA TACAAGCATG AAACTTTTGT ATCACAACAG 88587 .......... .......... .......... .......... .......... .......... 438 ATAGTTCCCT TTTATATATA TACCTTCATA TATTAAATTT AACCTAACCA TTTAATTTTC 88527 .......... .......... .......... .......... .......... .......... 438 TCAGAAACAG AAAAAGAAAA AAACAGACAT AATAATGTCT CAAGATATTC TTCCATTGGT 88467 .......... .......... .......... .......... .......... .......... 438 TGTGATTTTG TATTTAGAGA TCTCAAATTA ATTACTATAG ATGATTCTAA TCAATTTTTT 88407 .......... .......... .......... .......... .......... .......... 438 TCTCTAAAAC GATTCCATTA CTCTAATATC TCGTGCTCAT ATGATGGTTA CTTTCTTTTA 88347 .......... .......... .......... .......... .......... .......... 438 AAGAATCGTA AGGCGTACAA ATCTTATCTT TTGTCTAATT CATCCACAAG AGAATATCGA 88287 .......... .......... .......... .......... .......... .......... 438 ATTCTTGAAT GTCTGTATAT GAAATATAGA AATGATCCTC CAAACTATTG TGGTATGTGC 88227 .......... .......... .......... .......... .......... .......... 438 TATGGTTCTA GAATCGATGA CATGGTTATA TTAATCTTTA AATCTTTTTA CTTTGTTAAC 88167 .......... .......... .......... .......... .......... .......... 438 TCTTTTATCT AAACATTCTT GGACAAGGAC TGATACATAC TGCTATGGTA TATTTTGTTC 88107 .......... .......... .......... .......... .......... .......... 438 TATGAACAAT ATAATTGGTT AACGTGTTGA TACAACAGTA CTTTGACGTG ATTTCAGATA 88047 .......... .......... .......... .......... .......... .......... 438 AAGTAAAAAA AATTTTAGTA TCAAATTTTA TAGAGATGAA GTAAAAAAAA AATTCAATAT 87987 .......... .......... .......... .......... .......... .......... 438 CAAATTTCAT AGGCGAGGAA GACTACTTTC ATTTGATTAC TTTGTCTTAG TTTATATGGT 87927 .......... .......... .......... .......... .......... .......... 438 GGAAAACGTA AAGAATTGCA AGTATGGATT ATGGAACAAG ATGGCTGAAA ATGGTTATGG 87867 .......... .......... .......... .......... .......... .......... 438 AACATTTGCA ACTTGCCTAT TCATTGCCTT CTGTTTGTTC AACGAACGGA AAAAATGGTG 87807 .......... .......... .......... .......... .......... .......... 438 AAATTCTCAT TCGAGAGTGT ATGAACATCG TTAGCATGTA TTATCCTCAA CAACAACAAT 87747 .......... .......... .......... .......... .......... .......... 438 TTGTTACAGA TTTCTTAGCT TCAATATGTT CGGATACTTG TATTTTTTAA ATATACTGTC 87687 .......... .......... .......... .......... .......... .......... 438 ACAAATTTAG AATCTTACTC CGTGAGACAC TTGACAACTT ACTCACGAAT CTTTCACGAT 87627 .......... .......... .......... .......... .......... .......... 438 CTTGTAAGCT CAAGCAAAAT CGCTAATAAA TAAAAGGTAT GCTAAGATCG ATAATATTGC 87567 .......... .......... .......... .......... .......... .......... 438 TTGGAAGATT GCTTACAAGT TGTTGGATTG ATTGTTTCAA GCTTGGATGT CTTGCAAATG 87507 .......... .......... .......... .......... .......... .......... 438 AATGACATCC TCTATTTATA CTACCTCCTA AGGACCTAAG TATAAATATT ATTTACTTTT 87447 .......... .......... .......... .......... .......... .......... 438 CTAGACCCTC CTTATTTACA CTCTGATCCC TCTCTAGAAA AGTCTATGTT GTGCGGAATT 87387 || || |||| ||||| |||| .......... .......... .......... .......AAG AG----TGTT GTGCGAAATT 457 TGAGATAATA CGAGAAAA-- TATAAACGCG AAAAACAAGA CAACAGATTT ACGTGGTTCA 87329 |||||||||| |||||||| |||||||||| |||| ||||| || ||| ||| |||||||||| TGAGATAATA CGAGAAAATA TATAAACGCG AAAACCAAGA CACCAGTTTT ACGTGGTTCA 517 CCAATAAATT GGCTACGTCC ACGGGAAGAG AGGGAGCAGT TTTATTATGG AGAGGCAAAA 87269 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CCAATAAATT GGCTACGTCC ACGGGAAGAG AGGGAGCAAT TTTATTATGG AGAGGCAAAA 577 ACAGAATTAC AGAATAGGGT TTGACATAGC GTCTATATAT AGTGCTAAGC TACGCCCTAA 87209 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||| |||||| ACAGAATTAC AGAATAGGGT TTGCCATAGC GTCTATATAT AGTGCTAAGC TACACCCTAA 637 AAGG 87205 |||| AAGG 641 hqPGS_C08HBa0037O11.1-_SGN-E301078- (93445 93399,89905 89854,89601 89554,89192 89171,88861 88823,87409 87205) ******************************************************************************** EST sequence 88 -strand 575 n (File: SGN-E301194-) 1 CATTCATAGA AAACTAAATT AAGAAGTCTA ACAGAGTGAA AAAAAAGACT AAAAGAAACA 61 GAATATTTAA GAAAAAAATA CAATATAGAC ATTATTCTTA TAAGATTGAT GTATATATAG 121 ATGAAAAAAT AAGTAAAAAT TAGTACATAA CTCTCTGAGT TTTTATCGAC TCCTTTCATA 181 TCCTATCAAA ATTCAAGAGT TTTCAGCATC TATTTTTACT ATAGAATAAA AATAATAATC 241 TTGATAGGGG TTTCATGAGA TAAAGAAGTT GAATTTATAC AAATAGAATA GAAGGAATAC 301 CAAAAGATTT CTTAAAGTTT AATTTAAATA TTTGGAGGTT ATGAATATGA AAAGATGATA 361 GTTATGAATA TTAAGAGTGT TGTGCGAAAT TTGAGATAAT ACGAGAAAAT ATATAAACGC 421 GAAAAACAAG ACAACAGATT TACGTGGTTC ACCAATAAAT TGGCTACGTC CACGGGAAGA 481 GAGGGAGCAA TTTTATTATG GAGAGGCAAA AACAGAATTA CAGAATAGGG TTTGCCATAG 541 CGTCTATATA TAGTGCTAAG CTACGCCCTA AAAGG Predicted gene structure (within gDNA segment 92470 to 86605): Exon 1 91737 91731 ( 7 n); cDNA 91 97 ( 7 n); score: 0.571 Intron 1 91730 90485 (1246 n); Pd: 0.644 (s: 0), Pa: 0.999 (s: 0) Exon 2 90484 90454 ( 31 n); cDNA 98 129 ( 32 n); score: 0.661 Intron 2 90453 90056 ( 398 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.65) Exon 3 90055 90016 ( 40 n); cDNA 130 169 ( 40 n); score: 0.650 Intron 3 90015 89878 ( 138 n); Pd: 0.000 (s: 0.65), Pa: 0.986 (s: 0) Exon 4 89877 89864 ( 14 n); cDNA 170 182 ( 13 n); score: 0.571 Intron 4 89863 89565 ( 299 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 5 89564 89539 ( 26 n); cDNA 183 207 ( 25 n); score: 0.538 Intron 5 89538 88678 ( 861 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 6 88677 88642 ( 36 n); cDNA 208 241 ( 34 n); score: 0.833 Intron 6 88641 88069 ( 573 n); Pd: 0.000 (s: 0), Pa: 0.630 (s: 0.58) Exon 7 88068 87996 ( 73 n); cDNA 242 307 ( 66 n); score: 0.616 Intron 7 87995 87937 ( 59 n); Pd: 0.000 (s: 0.66), Pa: 0.153 (s: 0.60) Exon 8 87936 87884 ( 53 n); cDNA 308 357 ( 50 n); score: 0.623 Intron 8 87883 87794 ( 90 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 9 87793 87778 ( 16 n); cDNA 358 372 ( 15 n); score: 0.750 Intron 9 87777 87410 ( 368 n); Pd: 0.683 (s: 0), Pa: 0.152 (s: 0.77) Exon 10 87409 87205 ( 205 n); cDNA 373 575 ( 203 n); score: 0.937 MATCH C08HBa0037O11.1- SGN-E301194- 0.816 501 0.871 C PGS_C08HBa0037O11.1-_SGN-E301194- (91737 91731,90484 90454,90055 90016,89877 89864,89564 89539,88677 88642,88068 87996,87936 87884,87793 87778,87409 87205) Alignment (genomic DNA sequence = upper lines): ATCCTTGGTA ATTTCTTTTG GAGCCTCAAC TCAAATTTGA TCCAACGTCA CAAACCTTGT 91678 || || ATTATTC... .......... .......... .......... .......... .......... 97 TTATTCAACC CCCCGCACAT TCAACCCCCC GCACACGGGC GGATGACAAA AAGTTATAAA 91618 .......... .......... .......... .......... .......... .......... 97 TAGGGAAAAC CCAAAAACTA AGATTGACAA CCATCCTTCT TAAAAGCTCA TTTGCAAGAA 91558 .......... .......... .......... .......... .......... .......... 97 ACCTTGCCAG TTTGATATTT GGTTAGGAAA TAGTAAACGT TTTTCTTACT AGTTACTGGT 91498 .......... .......... .......... .......... .......... .......... 97 ATTATTTTAA TCAAGAAAAA CAAAAAAAAG GGCAACATGA AGGTGCTACA ACTTATTAGT 91438 .......... .......... .......... .......... .......... .......... 97 GCAAATAATT CATTTTTTCA ACAAAAGACA ATGCTCTTGC ACAACCTATA ATCTTAACAT 91378 .......... .......... .......... .......... .......... .......... 97 CAAAGCAACA GCAAGTTCAA TCATCTAGCT GGTAAAGGAA CGCACGGAAG TACACTAATA 91318 .......... .......... .......... .......... .......... .......... 97 GCACTGAGTT CACTCATTAT GCAAGTCAAC GAGAAAACTG AAAACAATTC CTTACACAAG 91258 .......... .......... .......... .......... .......... .......... 97 CCAGCACATT AAGATCTAAG AAAACAAAAT AACCACCAAA TTGCAAAACA AGATAAAACA 91198 .......... .......... .......... .......... .......... .......... 97 TTTTCAACAA AGCACAAACC TGCATAAAAT TGTAACGTTC TCTTCCAATT GATTCATTTT 91138 .......... .......... .......... .......... .......... .......... 97 CTGCAATGGC AAAATACGCC AACATTGGAT AGTGCCCAAC ATAGGACGCA TAGCTATCGC 91078 .......... .......... .......... .......... .......... .......... 97 GCTGAATGTT TACCGCCCAC TCACTAAACC AAATACAAAA CATCCATAAC CTCAGTTATA 91018 .......... .......... .......... .......... .......... .......... 97 ATTGTTTGAC GATAAATGTC AAACAGAGAC AATAAATAAA TATATAAATT AGATCAATTT 90958 .......... .......... .......... .......... .......... .......... 97 CAAAAAATGC AAAAGTAGGC AACTTACAAT CTAGTCAAAT CGGCATGTCC TGTTCCAACA 90898 .......... .......... .......... .......... .......... .......... 97 TATTTAGCTT GTAAGTGCTC AAGCTGGGAG TTGATGTTGA ACCTGTCACT AGCCTGTATA 90838 .......... .......... .......... .......... .......... .......... 97 CACTCATTAA TCAACTGTAC ATTCTACAAA CAGAGAAAAA TTACAGTAAC ATGTACACTG 90778 .......... .......... .......... .......... .......... .......... 97 AGCTACACAA AATAAATTAG GGTTATGGGA AGAAAACATC GGGTGTTCGT GGAGATCTGG 90718 .......... .......... .......... .......... .......... .......... 97 AAGATGATAA TCAAATTTGA ATATGAAGGT AAAAATAAAA CTTCACAAAC ATACATAAGT 90658 .......... .......... .......... .......... .......... .......... 97 TGCACATGAA ATTAAAAATC ACGAAAGGAC ATAAAAATCA AAATTGAAAA CATATACATC 90598 .......... .......... .......... .......... .......... .......... 97 AAAGAGGGAA AATATATTAG GGTTTTGGTT AAGAAAGAGG AGCGAAATTG ATCGAACAAG 90538 .......... .......... .......... .......... .......... .......... 97 GAGATGATAA TCAAAATTGG TGTAAATTTA CCTGCATTTT TTTTTTTGTA CAGTGAGAAG 90478 | | ||| .......... .......... .......... .......... .......... ...TTATAAG 104 ATTGAAGGAG A-GGAGATGA ATAAAGCAGA GCGCGATATG GACTAAAATA TACTGTCGAA 90419 ||||| | | | |||||| | ||| ATTGATGTAT ATATAGATGA AAAAA..... .......... .......... .......... 129 GACGGGGAGT GAAGCGGGTC ACGCTTTCGG GTACATACAC AAGAAGCTTA CGTAAATATA 90359 .......... .......... .......... .......... .......... .......... 129 TTATAATTAA AAAATATTTA TTATTTATTA TAATAATATT TTTTTTATTT AATCACTTTT 90299 .......... .......... .......... .......... .......... .......... 129 AGTTTAGCTA AATACAAGTT TAATTCATAT TACAAAGAAT AATTTTTTAT TCATATATAA 90239 .......... .......... .......... .......... .......... .......... 129 TATAAATTTT AGTGATAGAT AATTCATTTA TCACACATTT TAATACATTT ATAATATAAT 90179 .......... .......... .......... .......... .......... .......... 129 GTGTCAAATT TTACCAAACA AATAGAATAT ATTTTAAAAA CAATTATAAT TCATATATAT 90119 .......... .......... .......... .......... .......... .......... 129 TAGATACATA ATTTACTTTT AATACATATT GCAGATTTAA CATAATATTA TTATAAATGG 90059 .......... .......... .......... .......... .......... .......... 129 TAATAAATAA AAAATATTGC TAAAATAAGT AATTATTTAT CAAAATGTAC CAATTTATGT 89999 ||| ||| ||| || | | || | | | | ||||| | | ...TAAGTAA AAATTAGTAC ATAACTCTCT GAGTTTTTAT CGA....... .......... 169 AATTTTTCTT ACATTAATAT ATGAAATATC GCCAATATAA TTACAGAAAT ACTCCCTCCC 89939 .......... .......... .......... .......... .......... .......... 169 GCCACTAAAA AAATAGCCTA ATTATTTTTC ATAACTATAG TTTGATAATA ACAATTCTTA 89879 .......... .......... .......... .......... .......... .......... 169 GCTACATGTT ATAGGGAGGA GAAAGGTGAG CGAGATTGGG AGAGAGAGGA GAGAGGCGAG 89819 || | | | ||| .CT-CCTTTC ATATC..... .......... .......... .......... .......... 182 AGAGAGGGCA AAAAGTGGGA GAGAGCTGAA TTGTATATGT ATATTGGATA GATAAATGTA 89759 .......... .......... .......... .......... .......... .......... 182 TACTATACAT ATGTATTTGT ATATATGACA AGCGAGATTG AGAGAGAGAG GAGAGAGGCG 89699 .......... .......... .......... .......... .......... .......... 182 AGCAAGATTG GGAGAGAGGC GAGCAAGATT GGGAGAGAGG TGAGCGAGAT TGGGCAGGGA 89639 .......... .......... .......... .......... .......... .......... 182 GCAGAAGAGA GGTGAATTAT ATATTTATAT TGGTTAGATA ATTGTATATT ATACATATAC 89579 .......... .......... .......... .......... .......... .......... 182 ATTTGTACAT ATAGCAAGCG AGATTGGGAG AGAGGCGAGC GAGATTGAGA AAGGGAGGAG 89519 | | | | ||| || || ||| .......... ....CTATCA AAATT-CAAG AGTTTTCAGC .......... .......... 207 AGAAGCAAGC GAGAGTGGTC AGAGAGTGGG AGAGAGATGA ATTGTATATG ATATTGATTA 89459 .......... .......... .......... .......... .......... .......... 207 AATAATTGTA TATTATACAT ATGCACTTGT ATATTCTAAC GAATTATACA TATACAAATG 89399 .......... .......... .......... .......... .......... .......... 207 TAGCTAGTTA TAGAAACTCG AAATCAGTGA ACATAATTAA TGTAATATTA GTCGTGAGTG 89339 .......... .......... .......... .......... .......... .......... 207 GTGATTATAG CAAACTATAA CTATGATGAA TAATTAAAAA ATATAAATTT GCTTAACCGC 89279 .......... .......... .......... .......... .......... .......... 207 GTAATTTTTC CAAAAAAAGA ATGATCTAAT TTTCTTTTTA GTCTATTTTA AAAAAAAATG 89219 .......... .......... .......... .......... .......... .......... 207 AGTCTTTTTC TATTTTTTTA TAACAGTTTA ACTTTAACTT TCTACCTGGC ATGTTTAAGG 89159 .......... .......... .......... .......... .......... .......... 207 TCACAAAATT AAAATATATT TTGATATATT TGATATAACT TTAATTTAGA ACTACAAGAT 89099 .......... .......... .......... .......... .......... .......... 207 TAAAATATTC TTTTTCTTTT TTAAACTTTG TTCTAAGTCA ACTAAATTAT CTTTTTTTAA 89039 .......... .......... .......... .......... .......... .......... 207 ACGGAGAAAG AAATAGCTTT GATCCTTGAT TAATGTAAAG AAAATTTTAT TTTCATGTGT 88979 .......... .......... .......... .......... .......... .......... 207 GTTAATTTGA GGATGAATGT AACTACTATT ATTTTTCCGT AGTATAATTG TATCACTTTT 88919 .......... .......... .......... .......... .......... .......... 207 AGGAGCCTTT GGTTGAATAC TTCATGTTAT TAGTAATTAT TGTAAAATGT GTCAATGTGT 88859 .......... .......... .......... .......... .......... .......... 207 AGTTTTCAAA TATGTAAAAT CATAATTTTG ATTATTATTG TGAGTCAGTT GAAAAAAGAA 88799 .......... .......... .......... .......... .......... .......... 207 GACGAATATA AATCTTACAT TAAATCATAA CACAAGTCGC TAAAGGAAAG TATTTAATAC 88739 .......... .......... .......... .......... .......... .......... 207 TAATAAAAAA AATATATATA TATATATATA TATAAATAAA ATAATAATTT ATTTAATCCA 88679 .......... .......... .......... .......... .......... .......... 207 GAAATATTTA TTACTAATAT AATAAAAATA ATAATTTATT TAATCCTAAT CCTAATTCCT 88619 | ||||| ||||| ||| |||||||||| ||||| | .ATCTATTT- TTACT-ATAG AATAAAAATA ATAATCT... .......... .......... 241 AATACAAGCA TGAAACTTTT GTATCACAAC AGATAGTTCC CTTTTATATA TATACCTTCA 88559 .......... .......... .......... .......... .......... .......... 241 TATATTAAAT TTAACCTAAC CATTTAATTT TCTCAGAAAC AGAAAAAGAA AAAAACAGAC 88499 .......... .......... .......... .......... .......... .......... 241 ATAATAATGT CTCAAGATAT TCTTCCATTG GTTGTGATTT TGTATTTAGA GATCTCAAAT 88439 .......... .......... .......... .......... .......... .......... 241 TAATTACTAT AGATGATTCT AATCAATTTT TTTCTCTAAA ACGATTCCAT TACTCTAATA 88379 .......... .......... .......... .......... .......... .......... 241 TCTCGTGCTC ATATGATGGT TACTTTCTTT TAAAGAATCG TAAGGCGTAC AAATCTTATC 88319 .......... .......... .......... .......... .......... .......... 241 TTTTGTCTAA TTCATCCACA AGAGAATATC GAATTCTTGA ATGTCTGTAT ATGAAATATA 88259 .......... .......... .......... .......... .......... .......... 241 GAAATGATCC TCCAAACTAT TGTGGTATGT GCTATGGTTC TAGAATCGAT GACATGGTTA 88199 .......... .......... .......... .......... .......... .......... 241 TATTAATCTT TAAATCTTTT TACTTTGTTA ACTCTTTTAT CTAAACATTC TTGGACAAGG 88139 .......... .......... .......... .......... .......... .......... 241 ACTGATACAT ACTGCTATGG TATATTTTGT TCTATGAACA ATATAATTGG TTAACGTGTT 88079 .......... .......... .......... .......... .......... .......... 241 GATACAACAG TACTTTGACG TGATTTCAGA TAAAGTAAAA AAAATTTTAG TATCAAATTT 88019 | | | | | | ||| ||||| || || |||| || ||||| .......... T-GATAGGGG TTTCATGAGA TAAAG-AAGT TGAA-TTTA- TA-CAAATAG 286 TATAGAGATG AAGTAAAAAA AAAATTCAAT ATCAAATTTC ATAGGCGAGG AAGACTACTT 87959 ||||| | | || || ||| | | AATAGA-AGG AA-TACCAAA AGA....... .......... .......... .......... 307 TCATTTGATT ACTTTGTCTT AGTTTATATG GTGGAAAACG TAAAGAATTG CAAGTATGGA 87899 ||| | | | || |||| | ||| | || || .......... .......... ..TTTCT-TA AAGTTTAATT TAAATATTTG GAGGTTATGA 344 TTATGGAACA AGATGGCTGA AAATGGTTAT GGAACATTTG CAACTTGCCT ATTCATTGCC 87839 ||| ||| | ||||| ATAT-GAA-A AGATG..... .......... .......... .......... .......... 357 TTCTGTTTGT TCAACGAACG GAAAAAATGG TGAAATTCTC ATTCGAGAGT GTATGAACAT 87779 | ||| |||||| || .......... .......... .......... .......... .....ATAGT -TATGAATAT 371 CGTTAGCATG TATTATCCTC AACAACAACA ATTTGTTACA GATTTCTTAG CTTCAATATG 87719 T......... .......... .......... .......... .......... .......... 372 TTCGGATACT TGTATTTTTT AAATATACTG TCACAAATTT AGAATCTTAC TCCGTGAGAC 87659 .......... .......... .......... .......... .......... .......... 372 ACTTGACAAC TTACTCACGA ATCTTTCACG ATCTTGTAAG CTCAAGCAAA ATCGCTAATA 87599 .......... .......... .......... .......... .......... .......... 372 AATAAAAGGT ATGCTAAGAT CGATAATATT GCTTGGAAGA TTGCTTACAA GTTGTTGGAT 87539 .......... .......... .......... .......... .......... .......... 372 TGATTGTTTC AAGCTTGGAT GTCTTGCAAA TGAATGACAT CCTCTATTTA TACTACCTCC 87479 .......... .......... .......... .......... .......... .......... 372 TAAGGACCTA AGTATAAATA TTATTTACTT TTCTAGACCC TCCTTATTTA CACTCTGATC 87419 .......... .......... .......... .......... .......... .......... 372 CCTCTCTAGA AAAGTCTATG TTGTGCGGAA TTTGAGATAA TACGAGAAAA TATA--AACG 87361 | | || || ||||||| || |||||||||| |||||||||| |||| |||| .........A AGAG----TG TTGTGCGAAA TTTGAGATAA TACGAGAAAA TATATAAACG 419 CGAAAAACAA GACAACAGAT TTACGTGGTT CACCAATAAA TTGGCTACGT CCACGGGAAG 87301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAAAACAA GACAACAGAT TTACGTGGTT CACCAATAAA TTGGCTACGT CCACGGGAAG 479 AGAGGGAGCA GTTTTATTAT GGAGAGGCAA AAACAGAATT ACAGAATAGG GTTTGACATA 87241 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AGAGGGAGCA ATTTTATTAT GGAGAGGCAA AAACAGAATT ACAGAATAGG GTTTGCCATA 539 GCGTCTATAT ATAGTGCTAA GCTACGCCCT AAAAGG 87205 |||||||||| |||||||||| |||||||||| |||||| GCGTCTATAT ATAGTGCTAA GCTACGCCCT AAAAGG 575 hqPGS_C08HBa0037O11.1-_SGN-E301194- (88677 88642,88068 87996,87936 87884,87793 87778,87409 87205) ******************************************************************************** EST sequence 43 +strand 575 n (File: SGN-E548516+) 1 AAAATGCAGG CTAGTGACAG GTTCAACATC AACTCCCAGC TTGAGCACTT ACAAGCTAAA 61 TATGTTGGAA CAGGACATGC CGATTTGACT AGATTTGAGT GGGCGGTAAA CATTCAGCGC 121 GATAGCTATG CGTCCTATGT TGGGCACTAT CCAATGTTGG CGTATTTTGC CATTGCAGAA 181 AATGAATCAA TTGGAAGAGA ACGTTACAAT TTTATGCAGA AAATGCTTTT GCCGTGTGGC 241 CTTCCACCTG AAAGAGAAGA TGATTAAGAG TTGCAATAAA TAAAGGCAAG ATGCAAGGAT 301 CATAAACCAT AGGTTTTCGT TATCTCCAGC CTCCTTACAT TCTTTTCATA TCATGTCAAC 361 CCTACATTGA AGTGTAAATG GTCAGTTTGG CAGGCCATTT ATGGATACTG ATTAAACCTT 421 AGGAATTATA AATCGTTTAC ATTTGATCAC TCTATCTAAA ACCTCTCTTT GTGATGGGTC 481 GATTTCAATT CATCATTCTT TTTTGTTTTC TTGTATGTGT ATCAAGAGCA CATATAATAA 541 TTGATCAATG GGAAAGGTTA GCATTTATTT GATGT Predicted gene structure (within gDNA segment 90182 to 94575): Exon 1 90498 90506 ( 9 n); cDNA 1 9 ( 9 n); score: 1.000 Intron 1 90507 90844 ( 338 n); Pd: 0.998 (s: 0), Pa: 0.976 (s: 1.00) Exon 2 90845 90930 ( 86 n); cDNA 10 95 ( 86 n); score: 1.000 Intron 2 90931 91054 ( 124 n); Pd: 0.989 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 91055 91178 ( 124 n); cDNA 96 219 ( 124 n); score: 1.000 Intron 3 91179 93519 (2341 n); Pd: 0.994 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 93520 93874 ( 355 n); cDNA 220 575 ( 356 n); score: 0.993 MATCH C08HBa0037O11.1+ SGN-E548516+ 0.996 574 0.998 C PGS_C08HBa0037O11.1+_SGN-E548516+ (90498 90506,90845 90930,91055 91178,93520 93874) Alignment (genomic DNA sequence = upper lines): AAAATGCAGG TAAATTTACA CCAATTTTGA TTATCATCTC CTTGTTCGAT CAATTTCGCT 90557 ||||||||| AAAATGCAG. .......... .......... .......... .......... .......... 9 CCTCTTTCTT AACCAAAACC CTAATATATT TTCCCTCTTT GATGTATATG TTTTCAATTT 90617 .......... .......... .......... .......... .......... .......... 9 TGATTTTTAT GTCCTTTCGT GATTTTTAAT TTCATGTGCA ACTTATGTAT GTTTGTGAAG 90677 .......... .......... .......... .......... .......... .......... 9 TTTTATTTTT ACCTTCATAT TCAAATTTGA TTATCATCTT CCAGATCTCC ACGAACACCC 90737 .......... .......... .......... .......... .......... .......... 9 GATGTTTTCT TCCCATAACC CTAATTTATT TTGTGTAGCT CAGTGTACAT GTTACTGTAA 90797 .......... .......... .......... .......... .......... .......... 9 TTTTTCTCTG TTTGTAGAAT GTACAGTTGA TTAATGAGTG TATACAGGCT AGTGACAGGT 90857 ||| |||||||||| .......... .......... .......... .......... .......GCT AGTGACAGGT 22 TCAACATCAA CTCCCAGCTT GAGCACTTAC AAGCTAAATA TGTTGGAACA GGACATGCCG 90917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACATCAA CTCCCAGCTT GAGCACTTAC AAGCTAAATA TGTTGGAACA GGACATGCCG 82 ATTTGACTAG ATTGTAAGTT GCCTACTTTT GCATTTTTTG AAATTGATCT AATTTATATA 90977 |||||||||| ||| ATTTGACTAG ATT....... .......... .......... .......... .......... 95 TTTATTTATT GTCTCTGTTT GACATTTATC GTCAAACAAT TATAACTGAG GTTATGGATG 91037 .......... .......... .......... .......... .......... .......... 95 TTTTGTATTT GGTTTAGTGA GTGGGCGGTA AACATTCAGC GCGATAGCTA TGCGTCCTAT 91097 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......TGA GTGGGCGGTA AACATTCAGC GCGATAGCTA TGCGTCCTAT 138 GTTGGGCACT ATCCAATGTT GGCGTATTTT GCCATTGCAG AAAATGAATC AATTGGAAGA 91157 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGGCACT ATCCAATGTT GGCGTATTTT GCCATTGCAG AAAATGAATC AATTGGAAGA 198 GAACGTTACA ATTTTATGCA GGTTTGTGCT TTGTTGAAAA TGTTTTATCT TGTTTTGCAA 91217 |||||||||| |||||||||| | GAACGTTACA ATTTTATGCA G......... .......... .......... .......... 219 TTTGGTGGTT ATTTTGTTTT CTTAGATCTT AATGTGCTGG CTTGTGTAAG GAATTGTTTT 91277 .......... .......... .......... .......... .......... .......... 219 CAGTTTTCTC GTTGACTTGC ATAATGAGTG AACTCAGTGC TATTAGTGTA CTTCCGTGCG 91337 .......... .......... .......... .......... .......... .......... 219 TTCCTTTACC AGCTAGATGA TTGAACTTGC TGTTGCTTTG ATGTTAAGAT TATAGGTTGT 91397 .......... .......... .......... .......... .......... .......... 219 GCAAGAGCAT TGTCTTTTGT TGAAAAAATG AATTATTTGC ACTAATAAGT TGTAGCACCT 91457 .......... .......... .......... .......... .......... .......... 219 TCATGTTGCC CTTTTTTTTG TTTTTCTTGA TTAAAATAAT ACCAGTAACT AGTAAGAAAA 91517 .......... .......... .......... .......... .......... .......... 219 ACGTTTACTA TTTCCTAACC AAATATCAAA CTGGCAAGGT TTCTTGCAAA TGAGCTTTTA 91577 .......... .......... .......... .......... .......... .......... 219 AGAAGGATGG TTGTCAATCT TAGTTTTTGG GTTTTCCCTA TTTATAACTT TTTGTCATCC 91637 .......... .......... .......... .......... .......... .......... 219 GCCCGTGTGC GGGGGGTTGA ATGTGCGGGG GGTTGAATAA ACAAGGTTTG TGACGTTGGA 91697 .......... .......... .......... .......... .......... .......... 219 TCAAATTTGA GTTGAGGCTC CAAAAGAAAT TACCAAGGAT CTGAACTAAC ACAAAAATTG 91757 .......... .......... .......... .......... .......... .......... 219 GAGTAGATGC CAAGACCATG AAGTTGGAAT GCACATGCAG TTTCTGGGGA GCTTTTGATT 91817 .......... .......... .......... .......... .......... .......... 219 GGTCAATCTA GGATATTAAG CTAAGTTGCC GGTTTAGAAA ATGTAGAGGA GATACTTGAT 91877 .......... .......... .......... .......... .......... .......... 219 GATATGTTTA ATCATTAATT AGGGTTGGAA CATGTATATC TATAGTTTAA GGGTATGTCA 91937 .......... .......... .......... .......... .......... .......... 219 AGGAATTAGT GTTATCAGTT CTGCCACCTT TTTGATGTAT TGTTTATCCT TTTGCTATAT 91997 .......... .......... .......... .......... .......... .......... 219 GCTTGCTAGA CTTGAGTGAG TTAGCTCTAA CTATACCTAC TTTGTCCATT TTCTTAGTAA 92057 .......... .......... .......... .......... .......... .......... 219 ACCTGCCACT TGAAGCCATT CCACTTTGTC AGCTAGAAAA TATGATTTCT AGACTTCCGC 92117 .......... .......... .......... .......... .......... .......... 219 TCTACCTAAA GCAAGTGTGT CATTTTTGTG AGTAAACATA GAACTTGAAA CCATTCAACT 92177 .......... .......... .......... .......... .......... .......... 219 TCATCCGCTA GAGGAAGATG CATACGAAGA CATCATATTC ATTTTTGAAT ATCTCCTAGC 92237 .......... .......... .......... .......... .......... .......... 219 AGTTCACCAC TTTTCAGTGC TTAAGTGTGA GTGTGTTATG CCTTTAAATT TTGAATTGCA 92297 .......... .......... .......... .......... .......... .......... 219 TAGAGCTAGA GGGAACTGTT TGGGTACTAG TTTAATGTTG TGCTCTATTT GGCCCTTTAT 92357 .......... .......... .......... .......... .......... .......... 219 ATAAAGGTGT AGTACATACA CTCTGTCATG CTGATTCTAT CTGCATTCTG GAAAGACCAG 92417 .......... .......... .......... .......... .......... .......... 219 TCTTTGAGGA TTCCCAAATT TTCCTCTGGT TTGAATCGTT TCAGGTCAAG TTCTACGGAA 92477 .......... .......... .......... .......... .......... .......... 219 AGAATTGAAA GGGAAGATGT GTTTCTTGAA CCTTTCTGTA GGGACTGCTT ATAATCACTG 92537 .......... .......... .......... .......... .......... .......... 219 TCTAGCTTCC AACATATAAA GGACATCCTA ACAATAATTT TATTTCCTTA CCTCATAGGG 92597 .......... .......... .......... .......... .......... .......... 219 TGGTAGGTAG ATGGAAGTTA ACATTGTTGA AAAGGAGGAA AACATGAAGT CCTTTGACTG 92657 .......... .......... .......... .......... .......... .......... 219 ACATTAACAA GTGGAGTTTT TGTGACGATA TACTAGAAGG CTGTCGCACT TCTTCGACTA 92717 .......... .......... .......... .......... .......... .......... 219 GAAACTTCCA AAACAATTCT CCTTCTGTCC CAATTTTTGT GGCGATTTGT TATTGAGCAT 92777 .......... .......... .......... .......... .......... .......... 219 GGAGTTAAAA AAGATTTTGT GTTGTAAAAC AATCTATAGA CATTTGTGTC GCTATAAATT 92837 .......... .......... .......... .......... .......... .......... 219 GTCTCATTAA TGGTAAAAAA TAGTAGTTAA AGTTAAATTG TTTCTAAATA AGGAGTATGA 92897 .......... .......... .......... .......... .......... .......... 219 CATTCTTTTT TGAATAGACT AAACATAGAA GTATGCCACA TAAATTAGGA TGGAGGGAGT 92957 .......... .......... .......... .......... .......... .......... 219 AATTATTTTT GTGAACTTAG AAGTCTTCAA GTCTGTGATG TAGAGCTACA GTTCGACTTG 93017 .......... .......... .......... .......... .......... .......... 219 CCTGTAGTTA TTTGTAGTGG TTAAACCTTG TTAAGCCCAA CAACCATTGT TATGTTGCCA 93077 .......... .......... .......... .......... .......... .......... 219 CTTCAAAAAA ATTTATAGGC TAGAGGTTAG TCAGATAACA TTAAGAAAGC GGACTTATCT 93137 .......... .......... .......... .......... .......... .......... 219 CCAATGTGTA TGCCTTTTGG AAAGGATAGA ATAGATATGC AGTTAATCGT CATCTCAACA 93197 .......... .......... .......... .......... .......... .......... 219 TGATCCCACT CGTGGGTGTT TGTACGACCA TTTGTTAAAT GCAATAATTT TAATGCTACT 93257 .......... .......... .......... .......... .......... .......... 219 TATCTGGAGA GCCAGCCACT TCCTTAACAA TTTCCGTGTT GATGAAAGGG TTAGCTGGTT 93317 .......... .......... .......... .......... .......... .......... 219 CACGTGGAAG AGAGAACGTT CAAGTTTATT TATCACCGGA CATGGAAAGA TTACAATTTG 93377 .......... .......... .......... .......... .......... .......... 219 TTAATATTCT TTCCATTTTA TAAGAATAGA ACAAGCAAAA GTATTGAATT TCTATATACA 93437 .......... .......... .......... .......... .......... .......... 219 TATGATAGAT TGTGAATATA CGTCCTTGAT TTGGTCTTAT ACTATTATTA CTAACAATGC 93497 .......... .......... .......... .......... .......... .......... 219 CTAGTTGCTT GTGCTTGTGC AGAAAATGCT TTTGCCGTGT GGCCTTCCAC CTGAAAGAGA 93557 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..AAAATGCT TTTGCCGTGT GGCCTTCCAC CTGAAAGAGA 257 AGATGATTAA GAGTTGCAAT AAATAAAGGC AAGATGCAAG GATCATAAAC CATAGGTTTT 93617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGATTAA GAGTTGCAAT AAATAAAGGC AAGATGCAAG GATCATAAAC CATAGGTTTT 317 CGTTATCTCC AGCCTCCTTA CATTCTTTTC ATATCATGTC AACCCTACAT TGAAGTGTAA 93677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTATCTCC AGCCTCCTTA CATTCTTTTC ATATCATGTC AACCCTACAT TGAAGTGTAA 377 ATGGTCAGTT TGGCAGGCCA TTTATGGATA CTGATTAAAC CTTAGGAATT ATAAATCGTT 93737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCAGTT TGGCAGGCCA TTTATGGATA CTGATTAAAC CTTAGGAATT ATAAATCGTT 437 TACATTTGAT CACTCTATCT AAAACCTCTC TTTGTGATGG GTCGATTTCA ATTCATCATT 93797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTTGAT CACTCTATCT AAAACCTCTC TTTGTGATGG GTCGATTTCA ATTCATCATT 497 CTTTTTTGTT TTCTTGTATG TGTATCAAGA GCACATATAA TAATTGATCA ATGGGAAAGG 93857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTGTT TTCTTGTATG TGTATCAAGA GCACATATAA TAATTGATCA ATGGGAAAGG 557 TTAGCA-TTA TTTGATGT 93874 |||||| ||| |||||||| TTAGCATTTA TTTGATGT 575 hqPGS_C08HBa0037O11.1+_SGN-E548516+ (90845 90930,91055 91178,93520 93874) ******************************************************************************** EST sequence 32 +strand 502 n (File: SGN-E296188+) 1 AAATGCAGGC TAGTGACAGG TTCAACATCA ACTCCCAGCT TGAGCACTTA CAAGCTAAAT 61 ATGTTGGAAC AGGACATGCC GATTTGACTA GATTTGAGTG GGCGGTAAAC ATTCAGCGCG 121 ATAGCTATGC GTCCTATGTT GGGCACTATC CAATGTTGGC GTATTTTGCC ATTGCAGAAA 181 ATGAATCAAT TGGAAGAGAA CGTTACAATT TTATGCAGAA AATGCTTTTG CCGTGTGGCC 241 TTCCACCTGA AAGAGAAGAT GATTAAGAGT TGCAATAAAT AAAGGCAAGA TGCAAGGATC 301 ATAAACCATA GGTTTTCGTT ATCTCCAGCC TCCTTACATT CTTTTCATAT CATGTCAACC 361 CTACATTGAA GTGTAAATGG TCAGTTTGGC AGGCCATTTA TGGATACTGA TTAAACCTTA 421 AGAATTATAA ATCGTTTACA TTTGATCACT CTATCTAAAA CCTCTCTTTG TGATGGGTCG 481 ATTTCAATTC ATCATTCTTT TT Predicted gene structure (within gDNA segment 90192 to 94413): Exon 1 90499 90506 ( 8 n); cDNA 1 8 ( 8 n); score: 1.000 Intron 1 90507 90844 ( 338 n); Pd: 0.998 (s: 0), Pa: 0.976 (s: 1.00) Exon 2 90845 90930 ( 86 n); cDNA 9 94 ( 86 n); score: 1.000 Intron 2 90931 91054 ( 124 n); Pd: 0.989 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 91055 91178 ( 124 n); cDNA 95 218 ( 124 n); score: 1.000 Intron 3 91179 93519 (2341 n); Pd: 0.994 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 93520 93803 ( 284 n); cDNA 219 502 ( 284 n); score: 0.996 MATCH C08HBa0037O11.1+ SGN-E296188+ 0.998 502 1.000 C PGS_C08HBa0037O11.1+_SGN-E296188+ (90499 90506,90845 90930,91055 91178,93520 93803) Alignment (genomic DNA sequence = upper lines): AAATGCAGGT AAATTTACAC CAATTTTGAT TATCATCTCC TTGTTCGATC AATTTCGCTC 90558 |||||||| AAATGCAG.. .......... .......... .......... .......... .......... 8 CTCTTTCTTA ACCAAAACCC TAATATATTT TCCCTCTTTG ATGTATATGT TTTCAATTTT 90618 .......... .......... .......... .......... .......... .......... 8 GATTTTTATG TCCTTTCGTG ATTTTTAATT TCATGTGCAA CTTATGTATG TTTGTGAAGT 90678 .......... .......... .......... .......... .......... .......... 8 TTTATTTTTA CCTTCATATT CAAATTTGAT TATCATCTTC CAGATCTCCA CGAACACCCG 90738 .......... .......... .......... .......... .......... .......... 8 ATGTTTTCTT CCCATAACCC TAATTTATTT TGTGTAGCTC AGTGTACATG TTACTGTAAT 90798 .......... .......... .......... .......... .......... .......... 8 TTTTCTCTGT TTGTAGAATG TACAGTTGAT TAATGAGTGT ATACAGGCTA GTGACAGGTT 90858 |||| |||||||||| .......... .......... .......... .......... ......GCTA GTGACAGGTT 22 CAACATCAAC TCCCAGCTTG AGCACTTACA AGCTAAATAT GTTGGAACAG GACATGCCGA 90918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACATCAAC TCCCAGCTTG AGCACTTACA AGCTAAATAT GTTGGAACAG GACATGCCGA 82 TTTGACTAGA TTGTAAGTTG CCTACTTTTG CATTTTTTGA AATTGATCTA ATTTATATAT 90978 |||||||||| || TTTGACTAGA TT........ .......... .......... .......... .......... 94 TTATTTATTG TCTCTGTTTG ACATTTATCG TCAAACAATT ATAACTGAGG TTATGGATGT 91038 .......... .......... .......... .......... .......... .......... 94 TTTGTATTTG GTTTAGTGAG TGGGCGGTAA ACATTCAGCG CGATAGCTAT GCGTCCTATG 91098 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TGAG TGGGCGGTAA ACATTCAGCG CGATAGCTAT GCGTCCTATG 138 TTGGGCACTA TCCAATGTTG GCGTATTTTG CCATTGCAGA AAATGAATCA ATTGGAAGAG 91158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGCACTA TCCAATGTTG GCGTATTTTG CCATTGCAGA AAATGAATCA ATTGGAAGAG 198 AACGTTACAA TTTTATGCAG GTTTGTGCTT TGTTGAAAAT GTTTTATCTT GTTTTGCAAT 91218 |||||||||| |||||||||| AACGTTACAA TTTTATGCAG .......... .......... .......... .......... 218 TTGGTGGTTA TTTTGTTTTC TTAGATCTTA ATGTGCTGGC TTGTGTAAGG AATTGTTTTC 91278 .......... .......... .......... .......... .......... .......... 218 AGTTTTCTCG TTGACTTGCA TAATGAGTGA ACTCAGTGCT ATTAGTGTAC TTCCGTGCGT 91338 .......... .......... .......... .......... .......... .......... 218 TCCTTTACCA GCTAGATGAT TGAACTTGCT GTTGCTTTGA TGTTAAGATT ATAGGTTGTG 91398 .......... .......... .......... .......... .......... .......... 218 CAAGAGCATT GTCTTTTGTT GAAAAAATGA ATTATTTGCA CTAATAAGTT GTAGCACCTT 91458 .......... .......... .......... .......... .......... .......... 218 CATGTTGCCC TTTTTTTTGT TTTTCTTGAT TAAAATAATA CCAGTAACTA GTAAGAAAAA 91518 .......... .......... .......... .......... .......... .......... 218 CGTTTACTAT TTCCTAACCA AATATCAAAC TGGCAAGGTT TCTTGCAAAT GAGCTTTTAA 91578 .......... .......... .......... .......... .......... .......... 218 GAAGGATGGT TGTCAATCTT AGTTTTTGGG TTTTCCCTAT TTATAACTTT TTGTCATCCG 91638 .......... .......... .......... .......... .......... .......... 218 CCCGTGTGCG GGGGGTTGAA TGTGCGGGGG GTTGAATAAA CAAGGTTTGT GACGTTGGAT 91698 .......... .......... .......... .......... .......... .......... 218 CAAATTTGAG TTGAGGCTCC AAAAGAAATT ACCAAGGATC TGAACTAACA CAAAAATTGG 91758 .......... .......... .......... .......... .......... .......... 218 AGTAGATGCC AAGACCATGA AGTTGGAATG CACATGCAGT TTCTGGGGAG CTTTTGATTG 91818 .......... .......... .......... .......... .......... .......... 218 GTCAATCTAG GATATTAAGC TAAGTTGCCG GTTTAGAAAA TGTAGAGGAG ATACTTGATG 91878 .......... .......... .......... .......... .......... .......... 218 ATATGTTTAA TCATTAATTA GGGTTGGAAC ATGTATATCT ATAGTTTAAG GGTATGTCAA 91938 .......... .......... .......... .......... .......... .......... 218 GGAATTAGTG TTATCAGTTC TGCCACCTTT TTGATGTATT GTTTATCCTT TTGCTATATG 91998 .......... .......... .......... .......... .......... .......... 218 CTTGCTAGAC TTGAGTGAGT TAGCTCTAAC TATACCTACT TTGTCCATTT TCTTAGTAAA 92058 .......... .......... .......... .......... .......... .......... 218 CCTGCCACTT GAAGCCATTC CACTTTGTCA GCTAGAAAAT ATGATTTCTA GACTTCCGCT 92118 .......... .......... .......... .......... .......... .......... 218 CTACCTAAAG CAAGTGTGTC ATTTTTGTGA GTAAACATAG AACTTGAAAC CATTCAACTT 92178 .......... .......... .......... .......... .......... .......... 218 CATCCGCTAG AGGAAGATGC ATACGAAGAC ATCATATTCA TTTTTGAATA TCTCCTAGCA 92238 .......... .......... .......... .......... .......... .......... 218 GTTCACCACT TTTCAGTGCT TAAGTGTGAG TGTGTTATGC CTTTAAATTT TGAATTGCAT 92298 .......... .......... .......... .......... .......... .......... 218 AGAGCTAGAG GGAACTGTTT GGGTACTAGT TTAATGTTGT GCTCTATTTG GCCCTTTATA 92358 .......... .......... .......... .......... .......... .......... 218 TAAAGGTGTA GTACATACAC TCTGTCATGC TGATTCTATC TGCATTCTGG AAAGACCAGT 92418 .......... .......... .......... .......... .......... .......... 218 CTTTGAGGAT TCCCAAATTT TCCTCTGGTT TGAATCGTTT CAGGTCAAGT TCTACGGAAA 92478 .......... .......... .......... .......... .......... .......... 218 GAATTGAAAG GGAAGATGTG TTTCTTGAAC CTTTCTGTAG GGACTGCTTA TAATCACTGT 92538 .......... .......... .......... .......... .......... .......... 218 CTAGCTTCCA ACATATAAAG GACATCCTAA CAATAATTTT ATTTCCTTAC CTCATAGGGT 92598 .......... .......... .......... .......... .......... .......... 218 GGTAGGTAGA TGGAAGTTAA CATTGTTGAA AAGGAGGAAA ACATGAAGTC CTTTGACTGA 92658 .......... .......... .......... .......... .......... .......... 218 CATTAACAAG TGGAGTTTTT GTGACGATAT ACTAGAAGGC TGTCGCACTT CTTCGACTAG 92718 .......... .......... .......... .......... .......... .......... 218 AAACTTCCAA AACAATTCTC CTTCTGTCCC AATTTTTGTG GCGATTTGTT ATTGAGCATG 92778 .......... .......... .......... .......... .......... .......... 218 GAGTTAAAAA AGATTTTGTG TTGTAAAACA ATCTATAGAC ATTTGTGTCG CTATAAATTG 92838 .......... .......... .......... .......... .......... .......... 218 TCTCATTAAT GGTAAAAAAT AGTAGTTAAA GTTAAATTGT TTCTAAATAA GGAGTATGAC 92898 .......... .......... .......... .......... .......... .......... 218 ATTCTTTTTT GAATAGACTA AACATAGAAG TATGCCACAT AAATTAGGAT GGAGGGAGTA 92958 .......... .......... .......... .......... .......... .......... 218 ATTATTTTTG TGAACTTAGA AGTCTTCAAG TCTGTGATGT AGAGCTACAG TTCGACTTGC 93018 .......... .......... .......... .......... .......... .......... 218 CTGTAGTTAT TTGTAGTGGT TAAACCTTGT TAAGCCCAAC AACCATTGTT ATGTTGCCAC 93078 .......... .......... .......... .......... .......... .......... 218 TTCAAAAAAA TTTATAGGCT AGAGGTTAGT CAGATAACAT TAAGAAAGCG GACTTATCTC 93138 .......... .......... .......... .......... .......... .......... 218 CAATGTGTAT GCCTTTTGGA AAGGATAGAA TAGATATGCA GTTAATCGTC ATCTCAACAT 93198 .......... .......... .......... .......... .......... .......... 218 GATCCCACTC GTGGGTGTTT GTACGACCAT TTGTTAAATG CAATAATTTT AATGCTACTT 93258 .......... .......... .......... .......... .......... .......... 218 ATCTGGAGAG CCAGCCACTT CCTTAACAAT TTCCGTGTTG ATGAAAGGGT TAGCTGGTTC 93318 .......... .......... .......... .......... .......... .......... 218 ACGTGGAAGA GAGAACGTTC AAGTTTATTT ATCACCGGAC ATGGAAAGAT TACAATTTGT 93378 .......... .......... .......... .......... .......... .......... 218 TAATATTCTT TCCATTTTAT AAGAATAGAA CAAGCAAAAG TATTGAATTT CTATATACAT 93438 .......... .......... .......... .......... .......... .......... 218 ATGATAGATT GTGAATATAC GTCCTTGATT TGGTCTTATA CTATTATTAC TAACAATGCC 93498 .......... .......... .......... .......... .......... .......... 218 TAGTTGCTTG TGCTTGTGCA GAAAATGCTT TTGCCGTGTG GCCTTCCACC TGAAAGAGAA 93558 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .AAAATGCTT TTGCCGTGTG GCCTTCCACC TGAAAGAGAA 257 GATGATTAAG AGTTGCAATA AATAAAGGCA AGATGCAAGG ATCATAAACC ATAGGTTTTC 93618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATTAAG AGTTGCAATA AATAAAGGCA AGATGCAAGG ATCATAAACC ATAGGTTTTC 317 GTTATCTCCA GCCTCCTTAC ATTCTTTTCA TATCATGTCA ACCCTACATT GAAGTGTAAA 93678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATCTCCA GCCTCCTTAC ATTCTTTTCA TATCATGTCA ACCCTACATT GAAGTGTAAA 377 TGGTCAGTTT GGCAGGCCAT TTATGGATAC TGATTAAACC TTAGGAATTA TAAATCGTTT 93738 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TGGTCAGTTT GGCAGGCCAT TTATGGATAC TGATTAAACC TTAAGAATTA TAAATCGTTT 437 ACATTTGATC ACTCTATCTA AAACCTCTCT TTGTGATGGG TCGATTTCAA TTCATCATTC 93798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTGATC ACTCTATCTA AAACCTCTCT TTGTGATGGG TCGATTTCAA TTCATCATTC 497 TTTTT 93803 ||||| TTTTT 502 hqPGS_C08HBa0037O11.1+_SGN-E296188+ (90845 90930,91055 91178,93520 93803) ******************************************************************************** EST sequence 59 +strand 311 n (File: SGN-E309417+) 1 TTGGCGTATT TTGCCATTGC AGAAAATGAA TCAATTGGAA GAGAACGTTA CAATTTTATG 61 CAGAAAATGC TTTTGCCGTG TGGCCTTCCA CCTGAAAGAG AAGATGATTA AGAGTTGCAA 121 TAAATAAAGG CAAGATGCAA GGATCATAAA CCATAGGTTT TCGTTATCTC CAGCCTCCTT 181 ACATTCTTTT CATATCATGT CAACCCTACA TTGAAGTGTA AATGGTCAGT TTGGCAGGCC 241 ATTTATGGAT ACTGATTAAA CCTTAGGAAT TATAAATCGT TTACATTTGA TCACTCTAAA 301 AAAAAAAAAA A Predicted gene structure (within gDNA segment 90516 to 94494): Exon 1 91116 91178 ( 63 n); cDNA 1 63 ( 63 n); score: 1.000 Intron 1 91179 93519 (2341 n); Pd: 0.994 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 93520 93761 ( 242 n); cDNA 64 305 ( 242 n); score: 0.988 MATCH C08HBa0037O11.1+ SGN-E309417+ 0.990 305 0.981 C PGS_C08HBa0037O11.1+_SGN-E309417+ (91116 91178,93520 93761) Alignment (genomic DNA sequence = upper lines): TTGGCGTATT TTGCCATTGC AGAAAATGAA TCAATTGGAA GAGAACGTTA CAATTTTATG 91175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCGTATT TTGCCATTGC AGAAAATGAA TCAATTGGAA GAGAACGTTA CAATTTTATG 60 CAGGTTTGTG CTTTGTTGAA AATGTTTTAT CTTGTTTTGC AATTTGGTGG TTATTTTGTT 91235 ||| CAG....... .......... .......... .......... .......... .......... 63 TTCTTAGATC TTAATGTGCT GGCTTGTGTA AGGAATTGTT TTCAGTTTTC TCGTTGACTT 91295 .......... .......... .......... .......... .......... .......... 63 GCATAATGAG TGAACTCAGT GCTATTAGTG TACTTCCGTG CGTTCCTTTA CCAGCTAGAT 91355 .......... .......... .......... .......... .......... .......... 63 GATTGAACTT GCTGTTGCTT TGATGTTAAG ATTATAGGTT GTGCAAGAGC ATTGTCTTTT 91415 .......... .......... .......... .......... .......... .......... 63 GTTGAAAAAA TGAATTATTT GCACTAATAA GTTGTAGCAC CTTCATGTTG CCCTTTTTTT 91475 .......... .......... .......... .......... .......... .......... 63 TGTTTTTCTT GATTAAAATA ATACCAGTAA CTAGTAAGAA AAACGTTTAC TATTTCCTAA 91535 .......... .......... .......... .......... .......... .......... 63 CCAAATATCA AACTGGCAAG GTTTCTTGCA AATGAGCTTT TAAGAAGGAT GGTTGTCAAT 91595 .......... .......... .......... .......... .......... .......... 63 CTTAGTTTTT GGGTTTTCCC TATTTATAAC TTTTTGTCAT CCGCCCGTGT GCGGGGGGTT 91655 .......... .......... .......... .......... .......... .......... 63 GAATGTGCGG GGGGTTGAAT AAACAAGGTT TGTGACGTTG GATCAAATTT GAGTTGAGGC 91715 .......... .......... .......... .......... .......... .......... 63 TCCAAAAGAA ATTACCAAGG ATCTGAACTA ACACAAAAAT TGGAGTAGAT GCCAAGACCA 91775 .......... .......... .......... .......... .......... .......... 63 TGAAGTTGGA ATGCACATGC AGTTTCTGGG GAGCTTTTGA TTGGTCAATC TAGGATATTA 91835 .......... .......... .......... .......... .......... .......... 63 AGCTAAGTTG CCGGTTTAGA AAATGTAGAG GAGATACTTG ATGATATGTT TAATCATTAA 91895 .......... .......... .......... .......... .......... .......... 63 TTAGGGTTGG AACATGTATA TCTATAGTTT AAGGGTATGT CAAGGAATTA GTGTTATCAG 91955 .......... .......... .......... .......... .......... .......... 63 TTCTGCCACC TTTTTGATGT ATTGTTTATC CTTTTGCTAT ATGCTTGCTA GACTTGAGTG 92015 .......... .......... .......... .......... .......... .......... 63 AGTTAGCTCT AACTATACCT ACTTTGTCCA TTTTCTTAGT AAACCTGCCA CTTGAAGCCA 92075 .......... .......... .......... .......... .......... .......... 63 TTCCACTTTG TCAGCTAGAA AATATGATTT CTAGACTTCC GCTCTACCTA AAGCAAGTGT 92135 .......... .......... .......... .......... .......... .......... 63 GTCATTTTTG TGAGTAAACA TAGAACTTGA AACCATTCAA CTTCATCCGC TAGAGGAAGA 92195 .......... .......... .......... .......... .......... .......... 63 TGCATACGAA GACATCATAT TCATTTTTGA ATATCTCCTA GCAGTTCACC ACTTTTCAGT 92255 .......... .......... .......... .......... .......... .......... 63 GCTTAAGTGT GAGTGTGTTA TGCCTTTAAA TTTTGAATTG CATAGAGCTA GAGGGAACTG 92315 .......... .......... .......... .......... .......... .......... 63 TTTGGGTACT AGTTTAATGT TGTGCTCTAT TTGGCCCTTT ATATAAAGGT GTAGTACATA 92375 .......... .......... .......... .......... .......... .......... 63 CACTCTGTCA TGCTGATTCT ATCTGCATTC TGGAAAGACC AGTCTTTGAG GATTCCCAAA 92435 .......... .......... .......... .......... .......... .......... 63 TTTTCCTCTG GTTTGAATCG TTTCAGGTCA AGTTCTACGG AAAGAATTGA AAGGGAAGAT 92495 .......... .......... .......... .......... .......... .......... 63 GTGTTTCTTG AACCTTTCTG TAGGGACTGC TTATAATCAC TGTCTAGCTT CCAACATATA 92555 .......... .......... .......... .......... .......... .......... 63 AAGGACATCC TAACAATAAT TTTATTTCCT TACCTCATAG GGTGGTAGGT AGATGGAAGT 92615 .......... .......... .......... .......... .......... .......... 63 TAACATTGTT GAAAAGGAGG AAAACATGAA GTCCTTTGAC TGACATTAAC AAGTGGAGTT 92675 .......... .......... .......... .......... .......... .......... 63 TTTGTGACGA TATACTAGAA GGCTGTCGCA CTTCTTCGAC TAGAAACTTC CAAAACAATT 92735 .......... .......... .......... .......... .......... .......... 63 CTCCTTCTGT CCCAATTTTT GTGGCGATTT GTTATTGAGC ATGGAGTTAA AAAAGATTTT 92795 .......... .......... .......... .......... .......... .......... 63 GTGTTGTAAA ACAATCTATA GACATTTGTG TCGCTATAAA TTGTCTCATT AATGGTAAAA 92855 .......... .......... .......... .......... .......... .......... 63 AATAGTAGTT AAAGTTAAAT TGTTTCTAAA TAAGGAGTAT GACATTCTTT TTTGAATAGA 92915 .......... .......... .......... .......... .......... .......... 63 CTAAACATAG AAGTATGCCA CATAAATTAG GATGGAGGGA GTAATTATTT TTGTGAACTT 92975 .......... .......... .......... .......... .......... .......... 63 AGAAGTCTTC AAGTCTGTGA TGTAGAGCTA CAGTTCGACT TGCCTGTAGT TATTTGTAGT 93035 .......... .......... .......... .......... .......... .......... 63 GGTTAAACCT TGTTAAGCCC AACAACCATT GTTATGTTGC CACTTCAAAA AAATTTATAG 93095 .......... .......... .......... .......... .......... .......... 63 GCTAGAGGTT AGTCAGATAA CATTAAGAAA GCGGACTTAT CTCCAATGTG TATGCCTTTT 93155 .......... .......... .......... .......... .......... .......... 63 GGAAAGGATA GAATAGATAT GCAGTTAATC GTCATCTCAA CATGATCCCA CTCGTGGGTG 93215 .......... .......... .......... .......... .......... .......... 63 TTTGTACGAC CATTTGTTAA ATGCAATAAT TTTAATGCTA CTTATCTGGA GAGCCAGCCA 93275 .......... .......... .......... .......... .......... .......... 63 CTTCCTTAAC AATTTCCGTG TTGATGAAAG GGTTAGCTGG TTCACGTGGA AGAGAGAACG 93335 .......... .......... .......... .......... .......... .......... 63 TTCAAGTTTA TTTATCACCG GACATGGAAA GATTACAATT TGTTAATATT CTTTCCATTT 93395 .......... .......... .......... .......... .......... .......... 63 TATAAGAATA GAACAAGCAA AAGTATTGAA TTTCTATATA CATATGATAG ATTGTGAATA 93455 .......... .......... .......... .......... .......... .......... 63 TACGTCCTTG ATTTGGTCTT ATACTATTAT TACTAACAAT GCCTAGTTGC TTGTGCTTGT 93515 .......... .......... .......... .......... .......... .......... 63 GCAGAAAATG CTTTTGCCGT GTGGCCTTCC ACCTGAAAGA GAAGATGATT AAGAGTTGCA 93575 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....AAAATG CTTTTGCCGT GTGGCCTTCC ACCTGAAAGA GAAGATGATT AAGAGTTGCA 119 ATAAATAAAG GCAAGATGCA AGGATCATAA ACCATAGGTT TTCGTTATCT CCAGCCTCCT 93635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAATAAAG GCAAGATGCA AGGATCATAA ACCATAGGTT TTCGTTATCT CCAGCCTCCT 179 TACATTCTTT TCATATCATG TCAACCCTAC ATTGAAGTGT AAATGGTCAG TTTGGCAGGC 93695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTCTTT TCATATCATG TCAACCCTAC ATTGAAGTGT AAATGGTCAG TTTGGCAGGC 239 CATTTATGGA TACTGATTAA ACCTTAGGAA TTATAAATCG TTTACATTTG ATCACTCTAT 93755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CATTTATGGA TACTGATTAA ACCTTAGGAA TTATAAATCG TTTACATTTG ATCACTCTAA 299 CTAAAA 93761 |||| AAAAAA 305 hqPGS_C08HBa0037O11.1+_SGN-E309417+ (91116 91178,93520 93761) ******************************************************************************** EST sequence 89 +strand 540 n (File: SGN-E312145+) 1 TCTGATCCTG AATCTGACCT CCCTGGGTAC TTCGGTGTGC TCAAGAGGCT TAAAGAGGCG 61 TTAAAATTTT TGGGGGAGAA TTGTGACATG GCGATTCAGT GGTTGGCGGA CATTGTGGAG 121 TATCTAGAGG ATCATAATGT TGCTGATGAC AAGTTCATTT CTAGTTTAAA GGAGGCGTTG 181 ACTACTCTGA AGGAGTTGCA TCGTGGGGAG GATTGGAGTT GCCTTGATGG AGGACTTCTT 241 GAGGCTGCGT TGGATAGATT GGAAAATGAG TTTAGGCGGT TACTGACTGA AAATAGTGTA 301 CCGTTGCCTA TGTCTACTCC GGACTTACCA GGTGAACAGG CCTGCATAGC TCCATCCCTT 361 TTGCCTGTGG CTGTTATAAA GAAGCTACAG AGTATACTTG GCAGATTGGT TGCCAATAAC 421 AGGCTTGAAA AGTGTGTGTC AATCTATGTT GAGGTACGGA GTTCTAATGT CAGGGAAAGT 481 TTGCAGGCAC TTAATTTGGA TTACCTTGAG ATTTCAGTCT CCGAGTTCAA TGACGTGCAG Predicted gene structure (within gDNA segment 99059 to 100808): Exon 1 99659 100198 ( 540 n); cDNA 1 540 ( 540 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E312145+ 1.000 540 1.000 C PGS_C08HBa0037O11.1+_SGN-E312145+ (99659 100198) Alignment (genomic DNA sequence = upper lines): TCTGATCCTG AATCTGACCT CCCTGGGTAC TTCGGTGTGC TCAAGAGGCT TAAAGAGGCG 99718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGATCCTG AATCTGACCT CCCTGGGTAC TTCGGTGTGC TCAAGAGGCT TAAAGAGGCG 60 TTAAAATTTT TGGGGGAGAA TTGTGACATG GCGATTCAGT GGTTGGCGGA CATTGTGGAG 99778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAATTTT TGGGGGAGAA TTGTGACATG GCGATTCAGT GGTTGGCGGA CATTGTGGAG 120 TATCTAGAGG ATCATAATGT TGCTGATGAC AAGTTCATTT CTAGTTTAAA GGAGGCGTTG 99838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTAGAGG ATCATAATGT TGCTGATGAC AAGTTCATTT CTAGTTTAAA GGAGGCGTTG 180 ACTACTCTGA AGGAGTTGCA TCGTGGGGAG GATTGGAGTT GCCTTGATGG AGGACTTCTT 99898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACTCTGA AGGAGTTGCA TCGTGGGGAG GATTGGAGTT GCCTTGATGG AGGACTTCTT 240 GAGGCTGCGT TGGATAGATT GGAAAATGAG TTTAGGCGGT TACTGACTGA AAATAGTGTA 99958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCTGCGT TGGATAGATT GGAAAATGAG TTTAGGCGGT TACTGACTGA AAATAGTGTA 300 CCGTTGCCTA TGTCTACTCC GGACTTACCA GGTGAACAGG CCTGCATAGC TCCATCCCTT 100018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTGCCTA TGTCTACTCC GGACTTACCA GGTGAACAGG CCTGCATAGC TCCATCCCTT 360 TTGCCTGTGG CTGTTATAAA GAAGCTACAG AGTATACTTG GCAGATTGGT TGCCAATAAC 100078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTGTGG CTGTTATAAA GAAGCTACAG AGTATACTTG GCAGATTGGT TGCCAATAAC 420 AGGCTTGAAA AGTGTGTGTC AATCTATGTT GAGGTACGGA GTTCTAATGT CAGGGAAAGT 100138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTTGAAA AGTGTGTGTC AATCTATGTT GAGGTACGGA GTTCTAATGT CAGGGAAAGT 480 TTGCAGGCAC TTAATTTGGA TTACCTTGAG ATTTCAGTCT CCGAGTTCAA TGACGTGCAG 100198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAGGCAC TTAATTTGGA TTACCTTGAG ATTTCAGTCT CCGAGTTCAA TGACGTGCAG 540 hqPGS_C08HBa0037O11.1+_SGN-E312145+ (99659 100198) ******************************************************************************** EST sequence 91 +strand 443 n (File: SGN-E248213+) 1 GATTTCAGTC TCCGAGTTCA ATGACGTGCA CAGCATANAG GGCCACATGA CTAATTGGGA 61 AAAGCATCTA CACTTTGCTG TGAAACATCT TTTAGAAGCT GAGTATAAAC TCTGTAATGA 121 TGTCTTTGAT AGATTCGGAT TGGATGTGTG GATGGGTTGT TTCGCTAAAA TAGCTTCCCA 181 AGCAAGTATT CTTGCATTCA TTCAGTTTGG AAAAACTGTT ACGGAGAGTA AGAAAGATCC 241 AATTAAGATG TTAAAACTGT TAGATATCTT TGCATCTTTA AACAAACTGA GATTGGATTT 301 CAATCGGCTC TTCGGTGGAG CTGCATGTGC TGAAATCCAT AAGTTGACGA GGGATCTCAT 361 CAAGAGGGTG ATTGATGGGG CTAGTGAACT CTTCTGGGAA CTTCAAGTTC AAGTTGAATT 421 GCAGAGGCAA ATACCACCCA CCT Predicted gene structure (within gDNA segment 99568 to 101265): Exon 1 100168 100609 ( 442 n); cDNA 1 443 ( 443 n); score: 0.963 MATCH C08HBa0037O11.1+ SGN-E248213+ 0.963 442 0.998 C PGS_C08HBa0037O11.1+_SGN-E248213+ (100168 100609) Alignment (genomic DNA sequence = upper lines): GATTTCAGTC TCCGAGTTCA ATGACGTGCA GAGCATAGAG GGCCACATTG CTAATTGGGG 100227 |||||||||| |||||||||| |||||||||| |||||| || |||||||| ||||||||| GATTTCAGTC TCCGAGTTCA ATGACGTGCA CAGCATANAG GGCCACATGA CTAATTGGGA 60 TAAGCATCTA GAGTTTGCTG TGAAACATCT TTTAGAGGCT GAGTATAAAC TCTGTAATGA 100287 ||||||||| | ||||||| |||||||||| |||||| ||| |||||||||| |||||||||| AAAGCATCTA CACTTTGCTG TGAAACATCT TTTAGAAGCT GAGTATAAAC TCTGTAATGA 120 TGTCTTTGAT AGATTCGGAT TGGATGTGTG GATGGGTTGT TTCGCTAAAA TAGCTTCCCA 100347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTTGAT AGATTCGGAT TGGATGTGTG GATGGGTTGT TTCGCTAAAA TAGCTTCCCA 180 GGCAAGTATT CTTGCATTCA TTCAGTTTGG AAAAACTGTT ACGGAGAGTA AGAAGGATCC 100407 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AGCAAGTATT CTTGCATTCA TTCAGTTTGG AAAAACTGTT ACGGAGAGTA AGAAAGATCC 240 AATTAAGATG TTAAAACTGT TAGATATCTT TGCATCTTTA AACAAACTGA GATTGGATTT 100467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTAAGATG TTAAAACTGT TAGATATCTT TGCATCTTTA AACAAACTGA GATTGGATTT 300 CAATCGGCTC TTCGGTGGAG CTGCATGTGC TGAAATCCAG AGGTTGACGA GGGATCTCAT 100527 |||||||||| |||||||||| |||||||||| ||||||||| | |||||||| |||||||||| CAATCGGCTC TTCGGTGGAG CTGCATGTGC TGAAATCCAT AAGTTGACGA GGGATCTCAT 360 CAAGAGGGTG ATTGATGGGG CTAGTGAACT CTTCTGGGAA CTTCAGGTTC AAGTTGAATT 100587 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CAAGAGGGTG ATTGATGGGG CTAGTGAACT CTTCTGGGAA CTTCAAGTTC AAGTTGAATT 420 GCAGAGGCAA ATACCA-CCA CCT 100609 |||||||||| |||||| ||| ||| GCAGAGGCAA ATACCACCCA CCT 443 hqPGS_C08HBa0037O11.1+_SGN-E248213+ (100168 100609) ******************************************************************************** EST sequence 4 +strand 747 n (File: SGN-E348273+) 1 CATCTTTAAA CAAACTGAGA TTGGATTTCA ATCGGCTCTT CGGTGGAGCT GCATGTGCTG 61 AAATCCAGAG GTTGACGAGG GATCTCATCA AGAGGGTGAT TGATGGGGCT AGTGAACTCT 121 TCTGGGAACT TCAGGTTCAA GTTGAATTGC AGAGGCAAAT ACCACCACCT CCAGATGGTG 181 GTGTCCCGAA ACTTATCATC TTTATCACCG ACTACTGCAA TAAGCTGCTT GGAGATGATT 241 ATAAGCCAAT GCTCACCCAA GTTTTGGTAA TCGAAAGAAG TTGGAAGCGT GAAATATTTC 301 AAGAGCGGCT TCTCTTTGAT GAGCTACTGA ATATTATGAG AGCTGTTCAG CTTAATCTAG 361 AGACATGGTC CAAGGGATAC AAAGATGATA CCTTGTCATA CGTGTTCTTG ATGAACAATC 421 ATTGGCACCT TTACAAGGAT CTGAAAGGCA CAAAGCTTGG TATTCTTTTG GGTGATTCTT 481 GGTTGAGAGA ACATGAACAG TACAAAGAGT ACTATTCTGC CGTTTTCTTG AGAGAGAGCT 541 GGGCGAAGCT TCCAGCTCTA TTAAGCCGGG AAGGTCTCAT TCTCTTCTCT GGGTGGGCGT 601 GCCACTGCTC GCGATCTTGT TAAGAAACGA TTAAAAGCTT TTAATGAAGC TTTTGATGAC 661 ATGTATAAGA AGCAGTCTAA TTGGATCATG CTTGACAAAG AGCTAAGAGA AAAGACATGC 721 CAGCTCATCA TTCAAGCGAT TGTACCT Predicted gene structure (within gDNA segment 99840 to 101912): Exon 1 100440 101185 ( 746 n); cDNA 1 747 ( 747 n); score: 0.995 MATCH C08HBa0037O11.1+ SGN-E348273+ 0.995 746 0.999 C PGS_C08HBa0037O11.1+_SGN-E348273+ (100440 101185) Alignment (genomic DNA sequence = upper lines): CATCTTTAAA CAAACTGAGA TTGGATTTCA ATCGGCTCTT CGGTGGAGCT GCATGTGCTG 100499 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTTAAA CAAACTGAGA TTGGATTTCA ATCGGCTCTT CGGTGGAGCT GCATGTGCTG 60 AAATCCAGAG GTTGACGAGG GATCTCATCA AGAGGGTGAT TGATGGGGCT AGTGAACTCT 100559 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCCAGAG GTTGACGAGG GATCTCATCA AGAGGGTGAT TGATGGGGCT AGTGAACTCT 120 TCTGGGAACT TCAGGTTCAA GTTGAATTGC AGAGGCAAAT ACCACCACCT CCAGATGGTG 100619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGGAACT TCAGGTTCAA GTTGAATTGC AGAGGCAAAT ACCACCACCT CCAGATGGTG 180 GTGTCCCGAA ACTTATCATC TTTATCACCG ACTACTGCAA TAAGCTGCTT GGAGATGATT 100679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTCCCGAA ACTTATCATC TTTATCACCG ACTACTGCAA TAAGCTGCTT GGAGATGATT 240 ATAAGCCAAT GCTCACCCAA GTTTTGGTAA TCGAAAGAAG TTGGAAGCGT GAAATATTTC 100739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCCAAT GCTCACCCAA GTTTTGGTAA TCGAAAGAAG TTGGAAGCGT GAAATATTTC 300 AAGAGCGGCT TCTCTTTGAT GAGCTACTGA ATATTATGAG AGCTGTTCAG CTTAATCTAG 100799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGCGGCT TCTCTTTGAT GAGCTACTGA ATATTATGAG AGCTGTTCAG CTTAATCTAG 360 AGACATGGTC CAAGGGATAC AAAGATGATA CCTTGTCATA CGTGTTCTTG ATGAACAATC 100859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACATGGTC CAAGGGATAC AAAGATGATA CCTTGTCATA CGTGTTCTTG ATGAACAATC 420 ATTGGCACCT TTACAAGGAT CTGAAAGGCA CAAAGCTTGG TATTCTTTTG GGTGATTCTT 100919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGCACCT TTACAAGGAT CTGAAAGGCA CAAAGCTTGG TATTCTTTTG GGTGATTCTT 480 GGTTGAGAGA ACATGAACAG TACAAAGAGT ACTATTCTGC CGTTTTCTTG AGAGAGAGCT 100979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGAGAGA ACATGAACAG TACAAAGAGT ACTATTCTGC CGTTTTCTTG AGAGAGAGCT 540 GGGCGAAGCT TCCAGCTCTA TTAAGCCGGG AAGGTCTCAT TCTCTTCTCT -GGTGGGCGT 101038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGGCGAAGCT TCCAGCTCTA TTAAGCCGGG AAGGTCTCAT TCTCTTCTCT GGGTGGGCGT 600 GCCACTGCTC GCGATCTTGT TAAGAAACGA TTAAAAGCTT TTAATGAAGC TTTTGATGAC 101098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACTGCTC GCGATCTTGT TAAGAAACGA TTAAAAGCTT TTAATGAAGC TTTTGATGAC 660 ATGTATAAGA AGCAGTCTAA TTGGATCATG CTTGACAAAG AGCTAAGAGA AAAGACATGC 101158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATAAGA AGCAGTCTAA TTGGATCATG CTTGACAAAG AGCTAAGAGA AAAGACATGC 720 CAGCTCATCA TTCAGGCGAT TGTACCT 101185 |||||||||| |||| ||||| ||||||| CAGCTCATCA TTCAAGCGAT TGTACCT 747 hqPGS_C08HBa0037O11.1+_SGN-E348273+ (100440 101185) ******************************************************************************** EST sequence 82 +strand 671 n (File: SGN-E369697+) 1 GTCTGTTGCA GCTTGTAAAA GGAAGCAAGA AAGCATCTGG CTCAGACTTA AAGTTCTTGA 61 TTTACGGAAA AACAGGTTGG ATTGGAGGGT TGTTAGGAAA GATTTGTGAA GAACGTGGAA 121 TAGCATACGA GTATGGATTA GGACGACTAC AGGATAGGAG TTCTCTAATG CAAGACATGA 181 TAAGAGTAAA GCCAACTCAT GTTTTCAACG CGGCTGGTGT TACTGGGAGG CCTAATGTGG 241 ATTGGTGTGA ATCACACAAA GTAGAAACAA TTAGAACGAA TGTTGCTGGT ACACTAACTT 301 TAGCTGATAT CTGCAGAGAG GCTGATATCT TAGTGATGAA TTTCGCGACA GGTTGCATAT 361 TTGAATATGA TGAGCAGCAT CCACTAGGCT CAGGCATCGG ATTCAAAGAA GAAGACAAAC 421 CAAATTTTAC AGGATCCTTC TACTCGAAAA CCAAAGCCAT GGTGGAAGAG CTTCTAAAAG 481 AATACAACAA CGTTTGCACT CTCAGAGTAA GAATGCCAAT ATCATCAGAC CTTAGTAACC 541 CAAGAAACTT CATCACAAAG ATCACGCGTT ATGATAAAGT GGTAAACATC CCAAACAGCA 601 TGACAGTTCT AGATGAGCTA CTACCAATCT TTATCGAAAT GGCAAAGAGA AACTGTAGAG 661 GTATATGGAA C Predicted gene structure (within gDNA segment 105916 to 107881): Exon 1 106516 106976 ( 461 n); cDNA 1 461 ( 461 n); score: 1.000 Intron 1 106977 107061 ( 85 n); Pd: 0.959 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 2 107062 107271 ( 210 n); cDNA 462 671 ( 210 n); score: 0.995 MATCH C08HBa0037O11.1+ SGN-E369697+ 0.999 671 1.000 C PGS_C08HBa0037O11.1+_SGN-E369697+ (106516 106976,107062 107271) Alignment (genomic DNA sequence = upper lines): GTCTGTTGCA GCTTGTAAAA GGAAGCAAGA AAGCATCTGG CTCAGACTTA AAGTTCTTGA 106575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGTTGCA GCTTGTAAAA GGAAGCAAGA AAGCATCTGG CTCAGACTTA AAGTTCTTGA 60 TTTACGGAAA AACAGGTTGG ATTGGAGGGT TGTTAGGAAA GATTTGTGAA GAACGTGGAA 106635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACGGAAA AACAGGTTGG ATTGGAGGGT TGTTAGGAAA GATTTGTGAA GAACGTGGAA 120 TAGCATACGA GTATGGATTA GGACGACTAC AGGATAGGAG TTCTCTAATG CAAGACATGA 106695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCATACGA GTATGGATTA GGACGACTAC AGGATAGGAG TTCTCTAATG CAAGACATGA 180 TAAGAGTAAA GCCAACTCAT GTTTTCAACG CGGCTGGTGT TACTGGGAGG CCTAATGTGG 106755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAGTAAA GCCAACTCAT GTTTTCAACG CGGCTGGTGT TACTGGGAGG CCTAATGTGG 240 ATTGGTGTGA ATCACACAAA GTAGAAACAA TTAGAACGAA TGTTGCTGGT ACACTAACTT 106815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGTGTGA ATCACACAAA GTAGAAACAA TTAGAACGAA TGTTGCTGGT ACACTAACTT 300 TAGCTGATAT CTGCAGAGAG GCTGATATCT TAGTGATGAA TTTCGCGACA GGTTGCATAT 106875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGATAT CTGCAGAGAG GCTGATATCT TAGTGATGAA TTTCGCGACA GGTTGCATAT 360 TTGAATATGA TGAGCAGCAT CCACTAGGCT CAGGCATCGG ATTCAAAGAA GAAGACAAAC 106935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATATGA TGAGCAGCAT CCACTAGGCT CAGGCATCGG ATTCAAAGAA GAAGACAAAC 420 CAAATTTTAC AGGATCCTTC TACTCGAAAA CCAAAGCCAT GGTAACACTA GTTCATTTCC 106995 |||||||||| |||||||||| |||||||||| |||||||||| | CAAATTTTAC AGGATCCTTC TACTCGAAAA CCAAAGCCAT G......... .......... 461 ATTGGCATAT TCGTCTCATA TTTCACATCA CATTTTTGTT TCTCATAGCG TAATTAACAT 107055 .......... .......... .......... .......... .......... .......... 461 ATGCAGGTGG AAGAGCTTCT AAAAGAATAC AACAACGTTT GCACTCTCAG AGTAAGAATG 107115 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTGG AAGAGCTTCT AAAAGAATAC AACAACGTTT GCACTCTCAG AGTAAGAATG 515 CCAATATCAT CAGACCTTAG TAACCCAAGA AACTTCATCA CAAAGATCAC GCGTTATGAT 107175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATATCAT CAGACCTTAG TAACCCAAGA AACTTCATCA CAAAGATCAC GCGTTATGAT 575 AAAGTGGTAA ACATCCCAAA CAGCATGACA GTTCTAGATG AGCTACTACC AATCTCTATC 107235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AAAGTGGTAA ACATCCCAAA CAGCATGACA GTTCTAGATG AGCTACTACC AATCTTTATC 635 GAAATGGCAA AGAGAAACTG TAGAGGTATA TGGAAC 107271 |||||||||| |||||||||| |||||||||| |||||| GAAATGGCAA AGAGAAACTG TAGAGGTATA TGGAAC 671 hqPGS_C08HBa0037O11.1+_SGN-E369697+ (106516 106976,107062 107271) ******************************************************************************** EST sequence 75 +strand 499 n (File: SGN-E247311+) 1 GTCTGTTGCA GCTTGTAAAA AGAAGCAAGA AAGCATCTGG CTCAGACTTA AAGTTCTTGA 61 TTTACGGAAA AACAGGTTGG ATTGGAGGGT TGTTAGGAAA GATTTGTGAA GAACGTGGAA 121 TAGCATACGA GTATGGATTA GGACGACTAC AGGATAGGAG TTCTCTAATG CAAGACATGA 181 TAAGAGTAAA GCCAACTCAT GTTTTCAACG CGGCTGGTGT TACTGGGAGG CCTAATGTGG 241 ATTGGTGTGA ATCACACAAA GTAGAAACAA TTAGAACGAA TGTTGCTGGT ACACTAACTT 301 TAGCTGATAT CTGCAGAGAG GCTGATATCT TAGTGATGAA TTTCGCGACA GGTTGCATAT 361 TTGAATATGA TGAGCAGCAT CCACTAGGCT CAGGCATCGG ATTCAAAGAA GAAGACAAAC 421 CAAATTTTAC AGGATCCTTC TACTCGAAAA CCAAAGCCAT GGTGGAAGAG CTTCTAAAAG 481 AATACAACAA CGTTTGCAC Predicted gene structure (within gDNA segment 105916 to 107709): Exon 1 106516 106976 ( 461 n); cDNA 1 461 ( 461 n); score: 0.998 Intron 1 106977 107061 ( 85 n); Pd: 0.959 (s: 1.00), Pa: 0.980 (s: 0) Exon 2 107062 107099 ( 38 n); cDNA 462 499 ( 38 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E247311+ 0.998 499 1.000 C PGS_C08HBa0037O11.1+_SGN-E247311+ (106516 106976,107062 107099) Alignment (genomic DNA sequence = upper lines): GTCTGTTGCA GCTTGTAAAA GGAAGCAAGA AAGCATCTGG CTCAGACTTA AAGTTCTTGA 106575 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GTCTGTTGCA GCTTGTAAAA AGAAGCAAGA AAGCATCTGG CTCAGACTTA AAGTTCTTGA 60 TTTACGGAAA AACAGGTTGG ATTGGAGGGT TGTTAGGAAA GATTTGTGAA GAACGTGGAA 106635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACGGAAA AACAGGTTGG ATTGGAGGGT TGTTAGGAAA GATTTGTGAA GAACGTGGAA 120 TAGCATACGA GTATGGATTA GGACGACTAC AGGATAGGAG TTCTCTAATG CAAGACATGA 106695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCATACGA GTATGGATTA GGACGACTAC AGGATAGGAG TTCTCTAATG CAAGACATGA 180 TAAGAGTAAA GCCAACTCAT GTTTTCAACG CGGCTGGTGT TACTGGGAGG CCTAATGTGG 106755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAGTAAA GCCAACTCAT GTTTTCAACG CGGCTGGTGT TACTGGGAGG CCTAATGTGG 240 ATTGGTGTGA ATCACACAAA GTAGAAACAA TTAGAACGAA TGTTGCTGGT ACACTAACTT 106815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGTGTGA ATCACACAAA GTAGAAACAA TTAGAACGAA TGTTGCTGGT ACACTAACTT 300 TAGCTGATAT CTGCAGAGAG GCTGATATCT TAGTGATGAA TTTCGCGACA GGTTGCATAT 106875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGATAT CTGCAGAGAG GCTGATATCT TAGTGATGAA TTTCGCGACA GGTTGCATAT 360 TTGAATATGA TGAGCAGCAT CCACTAGGCT CAGGCATCGG ATTCAAAGAA GAAGACAAAC 106935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATATGA TGAGCAGCAT CCACTAGGCT CAGGCATCGG ATTCAAAGAA GAAGACAAAC 420 CAAATTTTAC AGGATCCTTC TACTCGAAAA CCAAAGCCAT GGTAACACTA GTTCATTTCC 106995 |||||||||| |||||||||| |||||||||| |||||||||| | CAAATTTTAC AGGATCCTTC TACTCGAAAA CCAAAGCCAT G......... .......... 461 ATTGGCATAT TCGTCTCATA TTTCACATCA CATTTTTGTT TCTCATAGCG TAATTAACAT 107055 .......... .......... .......... .......... .......... .......... 461 ATGCAGGTGG AAGAGCTTCT AAAAGAATAC AACAACGTTT GCAC 107099 |||| |||||||||| |||||||||| |||||||||| |||| ......GTGG AAGAGCTTCT AAAAGAATAC AACAACGTTT GCAC 499 hqPGS_C08HBa0037O11.1+_SGN-E247311+ (106516 106976,107062 107099) ******************************************************************************** EST sequence 125 -strand 630 n (File: SGN-E369696-) 1 ACAGGATCCT TCTACTCGAA AACCAAAGCC ATGGTGGAAG AGCTTCTAAA AGAATACAAC 61 AACGTTTGCA CTCTCAGAGT AAGAATGCCA ATATCATCAG ACCTTAGTAA CCCAAGAAAC 121 TTCATCACAA AGATCACGCG TTATGATAAA GTGGTAAACA TCCCAAACAG CATGACAGTT 181 CTAGATGAGC TACTACCAAT CTCTATCGAA ATGGCAAAGA GAAACTGTAG AGGTATATGG 241 AACTTCACAA ATCCGGGAGT TGTGAGCCAC AACGAGATTC TAGAGATGTA CAGAGACTAC 301 ATTGATCCTA AATTCAAATG GCAGAATTTC GATCTTCAAG AACAAGCTAA AGTGATCGTT 361 GCACCGCGAA GTAACAATGA GCTTGACATG ACAAAGCTGA AAAATGAGTT TCCAGAATTG 421 CTATCAATCA AAGATTCAAT CATCAAGTAT GTTTTTGGAC CTAACTAAAA AACATAAACT 481 TTCAAAAAAA ATGTATTTTT GGGATAGTTT TTATTTTTTT TCTTTTCATC AATCTAAGAC 541 TGTTGTCACA GTTACTTGAG ATTGTAGTTT ATGATACATA ATGTGATTTA AGAAATTCTA 601 ATTTTCCTTT TTTTTTAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 106334 to 108384): Exon 1 106944 106976 ( 33 n); cDNA 1 33 ( 33 n); score: 1.000 Intron 1 106977 107061 ( 85 n); Pd: 0.959 (s: 0), Pa: 0.980 (s: 1.00) Exon 2 107062 107658 ( 597 n); cDNA 34 630 ( 597 n); score: 0.990 MATCH C08HBa0037O11.1+ SGN-E369696- 0.990 630 1.000 C PGS_C08HBa0037O11.1+_SGN-E369696- (106944 106976,107062 107658) Alignment (genomic DNA sequence = upper lines): ACAGGATCCT TCTACTCGAA AACCAAAGCC ATGGTAACAC TAGTTCATTT CCATTGGCAT 107003 |||||||||| |||||||||| |||||||||| ||| ACAGGATCCT TCTACTCGAA AACCAAAGCC ATG....... .......... .......... 33 ATTCGTCTCA TATTTCACAT CACATTTTTG TTTCTCATAG CGTAATTAAC ATATGCAGGT 107063 || .......... .......... .......... .......... .......... ........GT 35 GGAAGAGCTT CTAAAAGAAT ACAACAACGT TTGCACTCTC AGAGTAAGAA TGCCAATATC 107123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGAGCTT CTAAAAGAAT ACAACAACGT TTGCACTCTC AGAGTAAGAA TGCCAATATC 95 ATCAGACCTT AGTAACCCAA GAAACTTCAT CACAAAGATC ACGCGTTATG ATAAAGTGGT 107183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGACCTT AGTAACCCAA GAAACTTCAT CACAAAGATC ACGCGTTATG ATAAAGTGGT 155 AAACATCCCA AACAGCATGA CAGTTCTAGA TGAGCTACTA CCAATCTCTA TCGAAATGGC 107243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACATCCCA AACAGCATGA CAGTTCTAGA TGAGCTACTA CCAATCTCTA TCGAAATGGC 215 AAAGAGAAAC TGTAGAGGTA TATGGAACTT CACAAATCCG GGAGTTGTGA GCCACAACGA 107303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAAAC TGTAGAGGTA TATGGAACTT CACAAATCCG GGAGTTGTGA GCCACAACGA 275 GATTCTAGAG ATGTACAGAG ACTACATTGA TCCTAAATTC AAATGGCAGA ATTTCGATCT 107363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCTAGAG ATGTACAGAG ACTACATTGA TCCTAAATTC AAATGGCAGA ATTTCGATCT 335 TCAAGAACAA GCTAAAGTGA TCGTTGCACC GCGAAGTAAC AATGAGCTTG ACATGACAAA 107423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAACAA GCTAAAGTGA TCGTTGCACC GCGAAGTAAC AATGAGCTTG ACATGACAAA 395 GCTGAAAAAT GAGTTTCCAG AATTGCTATC AATCAAAGAT TCAATCATCA AGTATGTTTT 107483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAAAAT GAGTTTCCAG AATTGCTATC AATCAAAGAT TCAATCATCA AGTATGTTTT 455 TGGACCTAAC TAAAAAACAT AAACTTTCAA AAAAAATGTA TTTTTGGGAT AGTTTTTATT 107543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACCTAAC TAAAAAACAT AAACTTTCAA AAAAAATGTA TTTTTGGGAT AGTTTTTATT 515 TTTTTTCTTT TCATCAATCT AAGACTGTTG TCACAGTTAC TTGAGATTGT AGTTTATGAT 107603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTCTTT TCATCAATCT AAGACTGTTG TCACAGTTAC TTGAGATTGT AGTTTATGAT 575 ACATAATGTG ATTTAAGAAA TTCTAATTTT CCTTTTTTTT TTATATATAT ATAAA 107658 |||||||||| |||||||||| |||||||||| |||||||||| | | | | | | ||| ACATAATGTG ATTTAAGAAA TTCTAATTTT CCTTTTTTTT TAAAAAAAAA AAAAA 630 hqPGS_C08HBa0037O11.1+_SGN-E369696- (106944 106976,107062 107658) ******************************************************************************** EST sequence 25 +strand 776 n (File: SGN-E263417+) 1 TACTCTCTCG CGTTCTTCAC TAGGGTTTCA GGTTATTATT CCGAGATGTC AAGAGTGTAC 61 GTTGGAAATC TTGATCCTAG GGTCACTGAA AGAGAACTAG AAGATGAATT CCGTGTCTTT 121 GGAGTTATAA GAAGTGTTTG GGTTGCAAGA CGCCCACCTG GTTATGCCTT TATTGACTTT 181 GATGACCGTA GAGATGCACA AGACGCAATC AGGGATCTGG ATGGTAAGAA TGGATGGAGA 241 GTGGAGCTCT CACATAATTC TAGAGGAGAA AGGGGTGGGG GCCGTGGAGG GGGTCGTGGT 301 CGTTCTGGAG GTTCTGATTT GAAGTGCTAT GAGTGTGGTG AGTCTGGTCA TTTTGCTCGT 361 GAATGCAGAG TGCGAGGAGG TCCAGGTCCT GGTAAACGTA GAAGTCGTAG CCCCCCTAGA 421 TATCGGAGGA GTCCAAGTTA TGGTCACAGG AGTTATAGNT CCTCGTGGAC GTTCCCCCAG 481 GCGCCGAAGC GTGTCACCTC GTGGCCGTAG TTATAGCCGA TCTCCATATC GTGGAAGAGA 541 TGAAGTTCCT TACTCCAATG GAAATGGTGT CAGGGACCGA ATCAGAAGCA GGAGCTGAAC 601 GGAGAAGTTG ATTACTTATC TCATTCAGGA GTTTTTTCGA TGTGTGTTAG CATTACTATG 661 CTTGACTTGA TCACAGCTGG TGTAAGTGAG GCCGTGCCCT CAACTTCAAC GGCTTTAATT 721 TTCGTATGGT ATTTATNNAG TGTGTTTTTT TAATTTCTTA ACTTTCTCCC CTTTTA Predicted gene structure (within gDNA segment 113635 to 121944): Exon 1 115209 115289 ( 81 n); cDNA 54 134 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 135 223 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 224 449 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0.81) Exon 4 117412 117522 ( 111 n); cDNA 450 561 ( 112 n); score: 0.788 Intron 4 117523 117716 ( 194 n); Pd: 0.922 (s: 0.78), Pa: 0.992 (s: 0.68) Exon 5 117717 117867 ( 151 n); cDNA 562 720 ( 159 n); score: 0.603 MATCH C08HBa0037O11.1+ SGN-E263417+ 0.796 658 0.848 C PGS_C08HBa0037O11.1+_SGN-E263417+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117867) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 113 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 134 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 134 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 134 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 134 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 134 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 134 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 134 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 134 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 134 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 134 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 134 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 134 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 134 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 134 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 134 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 134 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 134 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 134 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 134 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 134 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 134 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 134 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 134 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 134 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 134 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 186 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 223 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 223 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 223 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 236 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 296 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 356 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 416 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 449 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 449 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AG-TCCACGT 117427 |||||| || ||| ||| .......... .......... .......... .......... ...GAGTTAT AGNTCCTCGT 466 GGGCGTTCCC CTAGGCGCCG AAGCCCGTCA CCACGTGGTC GCAGCTATAG CCGTTCTCCA 117487 || ||||||| | |||||||| |||| |||| || ||||| | | || ||||| ||| |||||| GGACGTTCCC CCAGGCGCCG AAGCGTGTCA CCTCGTGGCC GTAGTTATAG CCGATCTCCA 526 TATCGAGGTC GAGAAGAAGC TCCATATGTT AATGGGTAAA GCCTCTATTT GAATATTTAG 117547 ||||| || |||| |||| ||| || ||||| TATCGTGGAA GAGATGAAGT TCCTTACTCC AATGG..... .......... .......... 561 GGTTCTTTTC AATGTGAACA CAACTGAGAC CTCTCTTTTA TAATATATAT ACATAGTTTA 117607 .......... .......... .......... .......... .......... .......... 561 AGTCTTTGGA TATGCTACAA CTTATTTTAT GAATGGACAT TTAATTGCTT TTTCCTAAAG 117667 .......... .......... .......... .......... .......... .......... 561 ATTATGATTA AGGTTCCCTT TTTCTTATTT ATGCGCTGCT TTTATGCAGA AATGGACTTA 117727 | ||||| | | .......... .......... .......... .......... .........A AATGGTGTCA 572 GAGAGTGTCA CAGAAGCCGA AGCTGAATGA AAGAGATGAT AGCCTGACAT GTCCTGGAG- 117786 | || | ||||||| | ||||||| | | || |||| | | | | | |||| GGGACCGAAT CAGAAGCAGG AGCTGAACGG AGAAGTTGAT TACTTATCTC ATTCAGGAGT 632 TCTTTCGAT- T-TG-T-G-- TTACTGTCCT TGACTTAATC ACAACT-GTG TAAGTGAGGC 117839 | ||||||| | || | | ||||| | || |||||| ||| ||| || ||| |||||||||| TTTTTCGATG TGTGTTAGCA TTACTATGCT TGACTTGATC ACAGCTGGTG TAAGTGAGGC 692 CATGCCCTCA GCTTAAACTG GTGGTTTT 117867 | |||||||| ||| ||| | | || CGTGCCCTCA ACTTCAACGG CTTTAATT 720 hqPGS_C08HBa0037O11.1+_SGN-E263417+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117867) ******************************************************************************** EST sequence 37 +strand 763 n (File: SGN-E316904+) 1 TAGGGTTTTA CTCTCTCGCG TTCTTCACTA GGGTTTCAGG TTATTATTCC GAGATGTCAA 61 GAGTGTACGT TGGAAATCTT GATCCTAGGG TCACTGAAAG AGAACTAGAA GATGAATTCC 121 GTGTCTTTGG AGTTATAAGA AGTGTTTGGG TTGCAAGACG CCCACCTGGT TATGCCTTTA 181 TTGACTTTGA TGACCGTAGA GATGCACAAG ACGCAATCAG GGATCTGGAT GGTAAGAATG 241 GATGGAGAGT GGAGCTCTCA CATAATTCTA GAGGAGAAAG GGGTGGGGGC CGTGGAGGGG 301 GTCGTGGTCG TTCTGGAGGT TCTGATTTGA AGTGCTATGA GTGTGGTGAG TCTGGTCATT 361 TTGCTCGTGA ATGCAGAGTG CGAGGAGGTC CAGGTCCTGG TAAACGTAGA AGTCGTAGCC 421 CCCCTAGATA TCGGAGGAGT CCAAGTTATG GTCACAGGAG TTATAGTCCT CGTGGACGTT 481 CCCCCAGGCG CCGAAGCGTG TCACCTCGTG GCCGTAGTTA TAGCCGATCT CCATATCGTG 541 GAAGAGATGA AGTTCCTTAC TCCAATGGAA ATGGTGTCAG GGACCGAATC AGAAGCAGGA 601 GCTGAACGGA GAAGTTGATT ACTTATCTCA TTCAGGAGTT TTTCGATGTG TGTTAGCATT 661 ACTATGCTTG ACTTGATCAC AGCTGTGTAA GTGAGGCCGT GCCCTCAACT TCAACGGCTT 721 TTATTTTCGT ATGGTATTAT AAGTGTGTTT TTTTAATTTC TTA Predicted gene structure (within gDNA segment 114155 to 121734): Exon 1 115209 115289 ( 81 n); cDNA 62 142 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 143 231 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 232 457 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0.86) Exon 4 117412 117522 ( 111 n); cDNA 458 568 ( 111 n); score: 0.811 Intron 4 117523 117716 ( 194 n); Pd: 0.922 (s: 0.78), Pa: 0.992 (s: 0.68) Exon 5 117717 117867 ( 151 n); cDNA 569 725 ( 157 n); score: 0.642 MATCH C08HBa0037O11.1+ SGN-E316904+ 0.809 658 0.862 C PGS_C08HBa0037O11.1+_SGN-E316904+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117867) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 121 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 142 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 142 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 142 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 142 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 142 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 142 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 142 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 142 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 142 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 142 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 142 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 142 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 142 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 142 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 142 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 142 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 142 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 142 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 142 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 142 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 142 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 142 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 142 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 142 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 142 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 194 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 231 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 231 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 231 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 244 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 304 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 364 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 424 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 457 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 457 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 474 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC CACGTGGTCG CAGCTATAGC CGTTCTCCAT 117488 | |||||||| ||||||||| ||| ||||| | ||||| || || |||||| || ||||||| GACGTTCCCC CAGGCGCCGA AGCGTGTCAC CTCGTGGCCG TAGTTATAGC CGATCTCCAT 534 ATCGAGGTCG AGAAGAAGCT CCATATGTTA ATGGGTAAAG CCTCTATTTG AATATTTAGG 117548 |||| || | ||| |||| | || || | |||| ATCGTGGAAG AGATGAAGTT CCTTACTCCA ATGG...... .......... .......... 568 GTTCTTTTCA ATGTGAACAC AACTGAGACC TCTCTTTTAT AATATATATA CATAGTTTAA 117608 .......... .......... .......... .......... .......... .......... 568 GTCTTTGGAT ATGCTACAAC TTATTTTATG AATGGACATT TAATTGCTTT TTCCTAAAGA 117668 .......... .......... .......... .......... .......... .......... 568 TTATGATTAA GGTTCCCTTT TTCTTATTTA TGCGCTGCTT TTATGCAGAA ATGGACTTAG 117728 || |||| | || .......... .......... .......... .......... ........AA ATGGTGTCAG 580 AGAGTGTCAC AGAAGCCGAA GCTGAATGAA AGAGATGATA GCCTGACATG TCCTGGAGTC 117788 || | | |||||| | | |||||| | | || |||| | | | | | ||||| GGACCGAATC AGAAGCAGGA GCTGAACGGA GAAGTTGATT ACTTATCTCA TTCAGGAGTT 640 TTTCGAT-T- TG-T-G--TT ACTGTCCTTG ACTTAATCAC AACTGTGTAA GTGAGGCCAT 117842 ||||||| | || | | || ||| | |||| |||| ||||| | |||||||| |||||||| | TTTCGATGTG TGTTAGCATT ACTATGCTTG ACTTGATCAC AGCTGTGTAA GTGAGGCCGT 700 GCCCTCAGCT TAAACTGGTG GTTTT 117867 ||||||| || | ||| | | | || GCCCTCAACT TCAACGGCTT TTATT 725 hqPGS_C08HBa0037O11.1+_SGN-E316904+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117867) ******************************************************************************** EST sequence 19 +strand 712 n (File: SGN-E348064+) 1 TCTCTCGCGT TCTTCACTAG GGTTTCAGGT TATTATTCCG AGATGTCAAG AGTGTACGTT 61 GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG TGTCTTTGGA 121 GTTATAAGAA GTGTTTGGGT TGCAAGACGC CCACCTGGTT ATGCCTTTAT TGACTTTGAT 181 GACCGTAGAG ATGCACAAGA CGCAATCAGG GATCTGGATG GTAAGAATGG ATGGAGAGTG 241 GAGCTCTCAC ATAATTCTAG AGGAGAAAGG GGTGGGGGCC GTGGAGGGGG TCGTGGTCGT 301 TCTGGAGGTT CTGATTTGAA GTGCTATGAG TGTGGTGAGT CTGGTCATTT TGCTCGTGAA 361 TGCAGAGTGC GAGGAGGTCC AGGTCCTGGT AAACGTAGAA GTCGTAGCCC CCCTAGATAT 421 CGGAGGAGTC CAAGTTATGG TCACAGGAGT TATAGTCCTC GTGGACGTTC CCCCAGGCGC 481 CGAAGCGTGT CACCTCGTGG CCGTAGTTAT AGCCGATCTC CATATCGTGG AAGAGATGAA 541 GTTCCTTACT CCAATGGAAA TGGTGTCAGG GACCGAATCA GAAGCAGGAG CTGAACGGAG 601 AAGTTGATTA CTTATCTCAT TCAGGAGTTN NTTCGATGTG TGTTAGCATT ACTATGCTTG 661 ACTTGATCAC AGCTGTGTAA GTGAGGCCGT GCCCTCAACT TCAACGGCTT TA Predicted gene structure (within gDNA segment 114265 to 121334): Exon 1 115209 115289 ( 81 n); cDNA 51 131 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 132 220 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 221 446 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0.86) Exon 4 117412 117522 ( 111 n); cDNA 447 557 ( 111 n); score: 0.811 Intron 4 117523 117716 ( 194 n); Pd: 0.922 (s: 0.78), Pa: 0.992 (s: 0.68) Exon 5 117717 117857 ( 141 n); cDNA 558 705 ( 148 n); score: 0.628 MATCH C08HBa0037O11.1+ SGN-E348064+ 0.808 648 0.910 C PGS_C08HBa0037O11.1+_SGN-E348064+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117857) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 110 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 131 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 131 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 131 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 131 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 131 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 131 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 131 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 131 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 131 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 131 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 131 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 131 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 131 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 131 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 131 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 131 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 131 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 131 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 131 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 131 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 131 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 131 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 131 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 131 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 131 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 183 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 220 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 220 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 220 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 233 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 293 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 353 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 413 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 446 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 446 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 463 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC CACGTGGTCG CAGCTATAGC CGTTCTCCAT 117488 | |||||||| ||||||||| ||| ||||| | ||||| || || |||||| || ||||||| GACGTTCCCC CAGGCGCCGA AGCGTGTCAC CTCGTGGCCG TAGTTATAGC CGATCTCCAT 523 ATCGAGGTCG AGAAGAAGCT CCATATGTTA ATGGGTAAAG CCTCTATTTG AATATTTAGG 117548 |||| || | ||| |||| | || || | |||| ATCGTGGAAG AGATGAAGTT CCTTACTCCA ATGG...... .......... .......... 557 GTTCTTTTCA ATGTGAACAC AACTGAGACC TCTCTTTTAT AATATATATA CATAGTTTAA 117608 .......... .......... .......... .......... .......... .......... 557 GTCTTTGGAT ATGCTACAAC TTATTTTATG AATGGACATT TAATTGCTTT TTCCTAAAGA 117668 .......... .......... .......... .......... .......... .......... 557 TTATGATTAA GGTTCCCTTT TTCTTATTTA TGCGCTGCTT TTATGCAGAA ATGGACTTAG 117728 || |||| | || .......... .......... .......... .......... ........AA ATGGTGTCAG 569 AGAGTGTCAC AGAAGCCGAA GCTGAATGAA AGAGATGATA GCCTGACATG TCCTGGAG-T 117787 || | | |||||| | | |||||| | | || |||| | | | | | |||| | GGACCGAATC AGAAGCAGGA GCTGAACGGA GAAGTTGATT ACTTATCTCA TTCAGGAGTT 629 CTTTCGAT-T -TG-T-G--T TACTGTCCTT GACTTAATCA CAACTGTGTA AGTGAGGCCA 117841 |||||| | || | | | |||| | ||| ||||| |||| || ||||||| ||||||||| NNTTCGATGT GTGTTAGCAT TACTATGCTT GACTTGATCA CAGCTGTGTA AGTGAGGCCG 689 TGCCCTCAGC TTAAAC 117857 |||||||| | || ||| TGCCCTCAAC TTCAAC 705 hqPGS_C08HBa0037O11.1+_SGN-E348064+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117857) ******************************************************************************** EST sequence 14 +strand 617 n (File: SGN-E268740+) 1 TCTCGCGTTC TTCACTAGGG TTTCAGGTTA TTATTCCGAG ATGTCAAGAG TGTACGTTGG 61 AAATCTTGAT CCTAGGGTCA CTGAAAGAGA ACTAGAAGAT GAATTCCGTG TCTTTGGAGT 121 TATAAGAAGT GTTTGGGTTG CAAGACGCCC ACCTGGTTAT GCCTTTATTG ACTTTGATGA 181 CCGTAGAGAT GCACAAGACG CAATCAGGGA TCTGGATGGT AAGAATGGAT GGAGAGTGGA 241 GCTCTCACAT AATTCTAGAG GAGAAAGGGG TGGGGGCCGT GGAGGGGGTC GTGGTCGTTC 301 TGGAGGTTCT GATTTGAAGT GCTATGAGTG TGGTGAGTCT GGTCATTTTG CTCGTGAATG 361 CAGAGTGCGA GGAGGTCCAG GTCCTGGTAA ACGTAGAAGT CGTAGCCCCC CTAGATATCG 421 GAGGAGTCCA AGTTATGGTC ACAGGAGTTA TAGTCCTCGT GGACGTTCCC CCAGGCGCCG 481 AAGCGTGTCA CCTCGTGGCC GTAGTTATAG CCGATCTCCA TATCGTGGAA GAGATGAAGT 541 TCCTTACTCC AATGGAAATG GTGTCAGGGA CCGAATCAGA AGCAGGAGCT GAACGGAGAA 601 GTTGATTACT TATCTCA Predicted gene structure (within gDNA segment 114285 to 120404): Exon 1 115209 115289 ( 81 n); cDNA 49 129 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 130 218 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 219 444 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0.86) Exon 4 117412 117522 ( 111 n); cDNA 445 555 ( 111 n); score: 0.811 Intron 4 117523 117716 ( 194 n); Pd: 0.922 (s: 0.78), Pa: 0.992 (s: 0.68) Exon 5 117717 117767 ( 51 n); cDNA 556 606 ( 51 n); score: 0.686 MATCH C08HBa0037O11.1+ SGN-E268740+ 0.842 558 0.904 C PGS_C08HBa0037O11.1+_SGN-E268740+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117767) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 108 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 129 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 129 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 129 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 129 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 129 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 129 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 129 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 129 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 129 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 129 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 129 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 129 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 129 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 129 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 129 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 129 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 129 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 129 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 129 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 129 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 129 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 129 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 129 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 129 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 129 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 181 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 218 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 218 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 218 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 231 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 291 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 351 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 411 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 444 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 444 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 461 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC CACGTGGTCG CAGCTATAGC CGTTCTCCAT 117488 | |||||||| ||||||||| ||| ||||| | ||||| || || |||||| || ||||||| GACGTTCCCC CAGGCGCCGA AGCGTGTCAC CTCGTGGCCG TAGTTATAGC CGATCTCCAT 521 ATCGAGGTCG AGAAGAAGCT CCATATGTTA ATGGGTAAAG CCTCTATTTG AATATTTAGG 117548 |||| || | ||| |||| | || || | |||| ATCGTGGAAG AGATGAAGTT CCTTACTCCA ATGG...... .......... .......... 555 GTTCTTTTCA ATGTGAACAC AACTGAGACC TCTCTTTTAT AATATATATA CATAGTTTAA 117608 .......... .......... .......... .......... .......... .......... 555 GTCTTTGGAT ATGCTACAAC TTATTTTATG AATGGACATT TAATTGCTTT TTCCTAAAGA 117668 .......... .......... .......... .......... .......... .......... 555 TTATGATTAA GGTTCCCTTT TTCTTATTTA TGCGCTGCTT TTATGCAGAA ATGGACTTAG 117728 || |||| | || .......... .......... .......... .......... ........AA ATGGTGTCAG 567 AGAGTGTCAC AGAAGCCGAA GCTGAATGAA AGAGATGAT 117767 || | | |||||| | | |||||| | | || |||| GGACCGAATC AGAAGCAGGA GCTGAACGGA GAAGTTGAT 606 hqPGS_C08HBa0037O11.1+_SGN-E268740+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117767) ******************************************************************************** EST sequence 9 +strand 666 n (File: SGN-E262171+) 1 TCTCTCGCGT TCTTCACTAG GGTTTCAGGT TATTATTCCG AGATGTCAAG AGTGTACGTT 61 GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG TGTCTTTGGA 121 GTTATAAGAA GTGTTTGGGT TGCAAGACGC CCACCTGGTT ATGCCTTTAT TGACTTTGAT 181 GACCGTAGAG ATGCACAAGA CGCAATCAGG GATCTGGATG GTAAGAATGG ATGGAGAGTG 241 GAGCTCTCAC ATAATTCTAG AGGAGAAAGG GGTGGGGGCC GTGGAGGGGG TCGTGGTCGT 301 TCTGGAGGTT CTGATTTGAA GTGCTATGAG TGTGGTGAGT CTGGTCATTT TGCTCGTGAA 361 TGCAGAGTGC GAGGAGGTCC AGGTCCTGGT AAACGTAGAA GTCGTAGCCC CCCTAGATAT 421 CGGAGGAGTC CAAGTTATGG TCACAGGAGT TATAGTCCTC GTGGACGTTC CCCCAGGCGC 481 CGAAGCGTGT CACCTCGTGG CCGTAGTTAT AGCCGATCTC CATATCGTGG AAGAGATGAA 541 GTTCCTTACT CCAATGGAAA TGGTGTCAGG GNACGAATCA GAAGCAGGAG CTGAACGGAG 601 AAAGTGATTA CTTATCTCAT TTCAGGAGTT TTCGATGTGT GTTAGCATTA CTATGCTTGA 661 CTTGAT Predicted gene structure (within gDNA segment 114265 to 120874): Exon 1 115209 115289 ( 81 n); cDNA 51 131 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 132 220 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 221 446 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0.86) Exon 4 117412 117522 ( 111 n); cDNA 447 557 ( 111 n); score: 0.811 Intron 4 117523 117716 ( 194 n); Pd: 0.922 (s: 0.78), Pa: 0.992 (s: 0) Exon 5 117717 117753 ( 37 n); cDNA 558 594 ( 37 n); score: 0.676 MATCH C08HBa0037O11.1+ SGN-E262171+ 0.858 544 0.817 C PGS_C08HBa0037O11.1+_SGN-E262171+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117753) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 110 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 131 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 131 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 131 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 131 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 131 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 131 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 131 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 131 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 131 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 131 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 131 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 131 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 131 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 131 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 131 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 131 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 131 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 131 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 131 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 131 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 131 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 131 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 131 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 131 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 131 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 183 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 220 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 220 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 220 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 233 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 293 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 353 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 413 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 446 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 446 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 463 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC CACGTGGTCG CAGCTATAGC CGTTCTCCAT 117488 | |||||||| ||||||||| ||| ||||| | ||||| || || |||||| || ||||||| GACGTTCCCC CAGGCGCCGA AGCGTGTCAC CTCGTGGCCG TAGTTATAGC CGATCTCCAT 523 ATCGAGGTCG AGAAGAAGCT CCATATGTTA ATGGGTAAAG CCTCTATTTG AATATTTAGG 117548 |||| || | ||| |||| | || || | |||| ATCGTGGAAG AGATGAAGTT CCTTACTCCA ATGG...... .......... .......... 557 GTTCTTTTCA ATGTGAACAC AACTGAGACC TCTCTTTTAT AATATATATA CATAGTTTAA 117608 .......... .......... .......... .......... .......... .......... 557 GTCTTTGGAT ATGCTACAAC TTATTTTATG AATGGACATT TAATTGCTTT TTCCTAAAGA 117668 .......... .......... .......... .......... .......... .......... 557 TTATGATTAA GGTTCCCTTT TTCTTATTTA TGCGCTGCTT TTATGCAGAA ATGGACTTAG 117728 || |||| | || .......... .......... .......... .......... ........AA ATGGTGTCAG 569 AGAGTGTCAC AGAAGCCGAA GCTGA 117753 | | | |||||| | | ||||| GGNACGAATC AGAAGCAGGA GCTGA 594 hqPGS_C08HBa0037O11.1+_SGN-E262171+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117753) ******************************************************************************** EST sequence 56 +strand 672 n (File: SGN-E343038+) 1 TTTTACTCTC TCGCGTTCTT CACTAGGGTT TCAGGTTATT ATTCCGAGAT GTCAAGAGTG 61 TACGTTGGAA ATCTTGATCC TAGGGTCACT GAAAGAGAAC TAGAAGATGA ATTCCGTGTC 121 TTTGGAGTTA TAAGAAGTGT TTGGGTTGCA AGACGCCCAC CTGGTTATGC CTTTATTGAC 181 TTTGATGACC GTAGAGATGC ACAAGACGCA ATCAGGGATC TGGATGGTAA GAATGGATGG 241 AGAGTGGAGC TCTCACATAA TTCTAGAGGA GAAAGGGGTG GGGGCCGTGG AGGGGGTCGT 301 GGTCGTTCTG GAGGTTCTGA TTTGAAGTGC TATGAGTGTG GTGAGTCTGG TCATTTTGCT 361 CGTGAATGCA GAGTGCGAGG AGGTCCAGGT CCTGGTAAAC GTAGAAGTCG TAGCCCCCCT 421 AGATATCGGA GGAGTCCAAG TTATGGTCAC AGGAGTTATA GTCCTCGTGG ACGTTCCCCC 481 AGGCGCCGAA GCGTGTCACC TCGTGGCCGT AGTTATAGCC GATCTCCATA TCGTGGAAGA 541 GATGAAGNTC CTTACTCCAA TGGAAATGGT GTCAGGGACC GAATCAGAAG CAGGAGCTGA 601 ACGGAGAAGT TGATTACTTA TCTCATTCAA GAGTTTTTCG ATGTGTGGTA GCATTACTAT 661 GCTTGACTTG AT Predicted gene structure (within gDNA segment 114205 to 120874): Exon 1 115209 115289 ( 81 n); cDNA 57 137 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 138 226 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 227 452 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0.86) Exon 4 117412 117522 ( 111 n); cDNA 453 563 ( 111 n); score: 0.811 Intron 4 117523 117716 ( 194 n); Pd: 0.922 (s: 0.78), Pa: 0.992 (s: 0) Exon 5 117717 117753 ( 37 n); cDNA 564 600 ( 37 n); score: 0.703 MATCH C08HBa0037O11.1+ SGN-E343038+ 0.858 544 0.810 C PGS_C08HBa0037O11.1+_SGN-E343038+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117753) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 116 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 137 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 137 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 137 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 137 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 137 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 137 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 137 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 137 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 137 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 137 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 137 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 137 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 137 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 137 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 137 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 137 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 137 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 137 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 137 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 137 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 137 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 137 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 137 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 137 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 137 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 189 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 226 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 226 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 226 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 239 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 299 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 359 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 419 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 452 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 452 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 469 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC CACGTGGTCG CAGCTATAGC CGTTCTCCAT 117488 | |||||||| ||||||||| ||| ||||| | ||||| || || |||||| || ||||||| GACGTTCCCC CAGGCGCCGA AGCGTGTCAC CTCGTGGCCG TAGTTATAGC CGATCTCCAT 529 ATCGAGGTCG AGAAGAAGCT CCATATGTTA ATGGGTAAAG CCTCTATTTG AATATTTAGG 117548 |||| || | ||| |||| | || || | |||| ATCGTGGAAG AGATGAAGNT CCTTACTCCA ATGG...... .......... .......... 563 GTTCTTTTCA ATGTGAACAC AACTGAGACC TCTCTTTTAT AATATATATA CATAGTTTAA 117608 .......... .......... .......... .......... .......... .......... 563 GTCTTTGGAT ATGCTACAAC TTATTTTATG AATGGACATT TAATTGCTTT TTCCTAAAGA 117668 .......... .......... .......... .......... .......... .......... 563 TTATGATTAA GGTTCCCTTT TTCTTATTTA TGCGCTGCTT TTATGCAGAA ATGGACTTAG 117728 || |||| | || .......... .......... .......... .......... ........AA ATGGTGTCAG 575 AGAGTGTCAC AGAAGCCGAA GCTGA 117753 || | | |||||| | | ||||| GGACCGAATC AGAAGCAGGA GCTGA 600 hqPGS_C08HBa0037O11.1+_SGN-E343038+ (115209 115289,116777 116865,117056 117281,117412 117522,117717 117753) ******************************************************************************** EST sequence 77 +strand 625 n (File: SGN-E368464+) 1 TTTACTCTCT CGCGTTCTTC ACTAGGGTTT CAGGTTATTA TTCCGAGATG TCAAGAGTGT 61 ACGTTGGAAA TCTTGATCCT AGGGTCACTG AAAGAGAACT AGAAGATGAA TTCCGTGTCT 121 TTGGAGTTAT AAGAAGTGTT TGGGTTGCAA GACGCCCACC TGGTTATGCC TTTATTGACT 181 TTGATGACCG TAGAGATGCA CAAGACGCAA TCAGGGATCT GGATGGTAAG AATGGATGGA 241 GAGTGGAGCT CTCACATAAT TCTAGAGGAG AAAGGGGTGG GGGCCGTGGA GGGGGTCGTG 301 GTCGTTCTGG AGGTTCTGAT TTGAAGTGCT ATGAGTGTGG TGAGTCTGGT CATTTTGCTC 361 GTGAATGCAG AGTGCGAGGA GGTCCAGGTC CTGGTAAACG TAGAAGTCGT AGCCCCCCTA 421 GATATCGGAG GAGTCCAAGT TATGGTCACA GGAGTTATAG TCCTCGTGGA CGTTCCCCCA 481 GGCGCCGAAG CGTGTCACCT CGTGGCCGTA GTTATAGCCG ATCTCCATAT CGTGGAAGAG 541 ATGAAGTTCC TTACTCCAAT GGAAATGGTG TCAGGGGACC GAATTAGAAG CAGGAGCTGA 601 ACGGAGAAGT TGATTTACTT ATTCT Predicted gene structure (within gDNA segment 114215 to 120414): Exon 1 115209 115289 ( 81 n); cDNA 56 136 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 137 225 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 226 451 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0.86) Exon 4 117412 117522 ( 111 n); cDNA 452 562 ( 111 n); score: 0.811 MATCH C08HBa0037O11.1+ SGN-E368464+ 0.858 507 0.811 C PGS_C08HBa0037O11.1+_SGN-E368464+ (115209 115289,116777 116865,117056 117281,117412 117522) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 115 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 136 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 136 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 136 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 136 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 136 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 136 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 136 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 136 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 136 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 136 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 136 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 136 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 136 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 136 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 136 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 136 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 136 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 136 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 136 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 136 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 136 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 136 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 136 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 136 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 136 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 188 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 225 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 225 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 225 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 238 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 298 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 358 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 418 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 451 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 451 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 468 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC CACGTGGTCG CAGCTATAGC CGTTCTCCAT 117488 | |||||||| ||||||||| ||| ||||| | ||||| || || |||||| || ||||||| GACGTTCCCC CAGGCGCCGA AGCGTGTCAC CTCGTGGCCG TAGTTATAGC CGATCTCCAT 528 ATCGAGGTCG AGAAGAAGCT CCATATGTTA ATGG 117522 |||| || | ||| |||| | || || | |||| ATCGTGGAAG AGATGAAGTT CCTTACTCCA ATGG 562 hqPGS_C08HBa0037O11.1+_SGN-E368464+ (115209 115289,116777 116865,117056 117281,117412 117522) ******************************************************************************** EST sequence 46 +strand 497 n (File: SGN-E312320+) 1 TACTCTTTCG CGTTCTTCAC TAGGGTTTCA GGTTATTATT CCGAGATGTC AAGAGTGTAC 61 GTTGGAAATC TTGATCCTAG GGTCACTGAA AGAGAACTAG AAGATGAATT CCGTGTCTTT 121 GGAGTTATAA GAAGTGTTTG GGTTGCAAGA CGCCCACCTG GTTATGCCTT TATTGACTTT 181 GATGACCGTA GAGATGCACA AGACGCAATC AGGGATCTGG ATGGTAAGAA TGGATGGAGA 241 GTGGAGCTCT CACATAATTC TAGAGGAGAA AGGGGTGGGG GCCGTGGAGG GGGTCGTGGT 301 CGCTCTGGAG GTTCTGATTT GAAGTGCTAT GAGTGTGGAG AGTCTGGTCA TTTTGCTCGT 361 GAATGCAGAG TGCGAGGAGG TCCAAGTCCT GGTAAACGTA AAAGTCGTAG CCCCCCTAGA 421 TATCGGAGGA GTTCAAGTTA TGGTCACAGG AGTTATAGTC CTCGTGGACG TTCCCCCAGG 481 CGCCGAAGCG TGTCACC Predicted gene structure (within gDNA segment 113635 to 119154): Exon 1 115209 115289 ( 81 n); cDNA 54 134 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 135 223 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 224 449 ( 226 n); score: 0.854 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.82), Pa: 0.000 (s: 0.88) Exon 4 117412 117459 ( 48 n); cDNA 450 497 ( 48 n); score: 0.875 MATCH C08HBa0037O11.1+ SGN-E312320+ 0.861 444 0.893 C PGS_C08HBa0037O11.1+_SGN-E312320+ (115209 115289,116777 116865,117056 117281,117412 117459) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 113 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 134 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 134 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 134 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 134 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 134 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 134 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 134 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 134 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 134 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 134 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 134 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 134 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 134 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 134 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 134 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 134 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 134 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 134 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 134 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 134 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 134 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 134 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 134 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 134 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 134 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 186 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 223 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 223 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 223 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 236 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 296 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| || || || | |||||||||| TGGTCGCTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGAGAGTCTG GTCATTTTGC 356 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||| | |||| | | |||| ||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAAG TCCTGGTAAA CGTAAAAGTC GTAGCCCCCC 416 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| ||| ||||||||| || TAGATATCGG AGGAGTTCAA GTTATGGTCA CAG....... .......... .......... 449 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 449 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 466 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC C 117459 | |||||||| ||||||||| ||| ||||| | GACGTTCCCC CAGGCGCCGA AGCGTGTCAC C 497 hqPGS_C08HBa0037O11.1+_SGN-E312320+ (115209 115289,116777 116865,117056 117281,117412 117459) ******************************************************************************** EST sequence 97 +strand 486 n (File: SGN-E302383+) 1 TTTTACTCTC TCGCGTTCTT CACTAGGGTT TCAGGTTATT ATTCCGAGAT GTCAAGAGTG 61 TACGTTGGAA ATCTTGATCC TAGGGTCACT GAAAGAGAAC TAGAAGATGA ATTCCGTGTC 121 TTTGGAGTTA TAAGAAGTGT TTGGGTTGCA AGACGCCCAC CTGGTTATGC CTTTATTGAC 181 TTTGATGACC GTAGAGATGC ACAAGACGCA ATCAGGGATC TGGATGGTAA GAATGGATGG 241 AGAGTGGAGC TCTCACATAA TTCTAGAGGA GAAAGGGGTG GGGGCCGTGG AGGGGGTCGT 301 GGTCGTTCTG GAGGTTCTGA TTTGAAGTGC TATGAGTGTG GTGAGTCTGG TCATTTTGCT 361 CGTGAATGCA GAGTGCGAGG AGGTCCAGGT CCTGGTAAAC GTACAAGTCG TAGCCCCCCT 421 AGATATCGGA GGAGTCCAAG TTATGGTCAC AGGAGTTATA GTCCTCGTGG ACGTTCCCCC 481 AGGCGC Predicted gene structure (within gDNA segment 114205 to 119014): Exon 1 115209 115289 ( 81 n); cDNA 57 137 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 138 226 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 227 452 ( 226 n); score: 0.867 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.84), Pa: 0.000 (s: 0) Exon 4 117412 117445 ( 34 n); cDNA 453 486 ( 34 n); score: 0.882 MATCH C08HBa0037O11.1+ SGN-E302383+ 0.869 430 0.885 C PGS_C08HBa0037O11.1+_SGN-E302383+ (115209 115289,116777 116865,117056 117281,117412 117445) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 116 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 137 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 137 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 137 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 137 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 137 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 137 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 137 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 137 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 137 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 137 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 137 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 137 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 137 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 137 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 137 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 137 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 137 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 137 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 137 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 137 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 137 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 137 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 137 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 137 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 137 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 189 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 226 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 226 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 226 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 239 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 299 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 359 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||| ||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTACAAGTC GTAGCCCCCC 419 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 452 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 452 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 469 GGCGTTCCCC TAGGCGC 117445 | |||||||| |||||| GACGTTCCCC CAGGCGC 486 hqPGS_C08HBa0037O11.1+_SGN-E302383+ (115209 115289,116777 116865,117056 117281,117412 117445) ******************************************************************************** EST sequence 68 +strand 479 n (File: SGN-E246798+) 1 TTTACTCTCT CGCGTTCTTC ACTAGGGTTT CAGGTTATTA TTCCGAGATG TCAAGAGTGT 61 ACGTTGGAAA TCTTGATCCT AGGGTCACTG AAAGAGAACT AGAAGATGAA TTCCGTGTCT 121 TTGGAGTTAT AAGAAGTGTT TGGGTTGCAA GACGCCCACC TGGTTATGCC TTTATTGACT 181 TTGATGACCG TAGAGATGCA CAAGACGCAA TCAGGGATCT GGATGGTAAG AATGGATGGA 241 GAGTGGAGCT CTCACATAAT TCTAGAGGAG AAAGGGGTGG GGGCCGTGGA GGGGGTCGTG 301 GTCGTTCTGG AGGTTCTGAT TTGAAGTGCT ATGAGTGTGG TGAGTCTGGT CATTTTGCTC 361 GTGAATGCAG AGTGCGAGGA GGTCCAGGTC CTGGTAAACG TAGAAGTCGT AGCCCCCCTA 421 GATATCGGAG GAGTCCAAGT TATGGTCACA GGAGTTATAG TCCTCGTGGA CGTTCCCCC Predicted gene structure (within gDNA segment 114215 to 118954): Exon 1 115209 115289 ( 81 n); cDNA 56 136 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 137 225 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117281 ( 226 n); cDNA 226 451 ( 226 n); score: 0.872 Intron 3 117282 117411 ( 130 n); Pd: 0.997 (s: 0.86), Pa: 0.000 (s: 0) Exon 4 117412 117438 ( 27 n); cDNA 452 478 ( 27 n); score: 0.889 MATCH C08HBa0037O11.1+ SGN-E246798+ 0.871 423 0.883 C PGS_C08HBa0037O11.1+_SGN-E246798+ (115209 115289,116777 116865,117056 117281,117412 117438) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 115 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 136 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 136 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 136 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 136 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 136 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 136 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 136 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 136 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 136 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 136 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 136 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 136 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 136 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 136 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 136 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 136 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 136 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 136 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 136 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 136 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 136 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 136 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 136 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 136 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 136 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 188 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 225 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 225 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 225 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 238 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 298 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 358 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 418 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| || TAGATATCGG AGGAGTCCAA GTTATGGTCA CAG....... .......... .......... 451 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 451 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 |||||| ||||| |||| .......... .......... .......... .......... ...GAGTTAT AGTCCTCGTG 468 GGCGTTCCCC 117438 | |||||||| GACGTTCCCC 478 hqPGS_C08HBa0037O11.1+_SGN-E246798+ (115209 115289,116777 116865,117056 117281,117412 117438) ******************************************************************************** EST sequence 45 +strand 466 n (File: SGN-E312392+) 1 AGGGTTTTAC TCTCTCGCGT TCTTCACTGG GGTTTCGGGG TATTATTCCG AGATGTCAAG 61 AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 121 TGTCTTTGGA GTTATAAGAA GTGTTTGGGT TGCAAGACGC CCACCTGGTT ATGCCTTTAT 181 TGACTTTGAT GACCGTAGAG ATGCACAAGA CGCAATCAGG GATCTGGATG GTAAGAATGG 241 ATGGAGAGTG GAGCTCTCAC ATAATTCTAG AGGAGAAAGG GGTGGGGGCC GTGGAGGGGG 301 TCGTGGTCGT TCTGGAGGTT CTGATTTGAA GTGCTATGAG TGTGGTGAGT CTGGTCATTT 361 TGCTCGTGAA TGCAGAGTGC GAGGAGGTCC AGGTCCTGGT AAACGTAGAA GTCGTAGCCC 421 CCCTAGATAT CGGAGGAGTC CAAGTTATGG TCACAGGAGT TATAGT Predicted gene structure (within gDNA segment 114165 to 118774): Exon 1 115209 115289 ( 81 n); cDNA 61 141 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 142 230 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.90) Exon 3 117056 117277 ( 222 n); cDNA 231 452 ( 222 n); score: 0.878 Intron 3 117278 117716 ( 439 n); Pd: 0.437 (s: 0.90), Pa: 0.992 (s: 0) Exon 4 117717 117730 ( 14 n); cDNA 453 465 ( 13 n); score: 0.714 MATCH C08HBa0037O11.1+ SGN-E312392+ 0.875 406 0.871 C PGS_C08HBa0037O11.1+_SGN-E312392+ (115209 115289,116777 116865,117056 117277,117717 117730) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 120 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 141 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 141 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 141 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 141 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 141 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 141 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 141 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 141 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 141 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 141 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 141 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 141 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 141 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 141 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 141 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 141 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 141 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 141 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 141 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 141 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 141 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 141 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 141 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 141 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 141 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 193 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 230 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 230 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 230 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 ||| |||||||||| .......... .......... .......... .......... .......GTA AGAATGGATG 243 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 303 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 363 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||||| |||| | | |||||||||| | ||||| || TCGTGAATGC AGAGTGCGAG GAGGTCCAGG TCCTGGTAAA CGTAGAAGTC GTAGCCCCCC 423 TAGATACCGC AGGAGCCCAA GTTATGGTCG TAGGTAAGAA ACTGATGTAT CATTGACTAG 117308 |||||| || ||||| |||| ||||||||| TAGATATCGG AGGAGTCCAA GTTATGGTC. .......... .......... .......... 452 GAATCTGTAA CAATTTGAGA TCCTTCCAAT ATATGTGATA TTCTTTACAT GGAATTTGCT 117368 .......... .......... .......... .......... .......... .......... 452 GCTGTTCTCT CTGTTTCTTC TGATTTTCAT CTCCCTGAAG CAGGAGTTAC AGTCCACGTG 117428 .......... .......... .......... .......... .......... .......... 452 GGCGTTCCCC TAGGCGCCGA AGCCCGTCAC CACGTGGTCG CAGCTATAGC CGTTCTCCAT 117488 .......... .......... .......... .......... .......... .......... 452 ATCGAGGTCG AGAAGAAGCT CCATATGTTA ATGGGTAAAG CCTCTATTTG AATATTTAGG 117548 .......... .......... .......... .......... .......... .......... 452 GTTCTTTTCA ATGTGAACAC AACTGAGACC TCTCTTTTAT AATATATATA CATAGTTTAA 117608 .......... .......... .......... .......... .......... .......... 452 GTCTTTGGAT ATGCTACAAC TTATTTTATG AATGGACATT TAATTGCTTT TTCCTAAAGA 117668 .......... .......... .......... .......... .......... .......... 452 TTATGATTAA GGTTCCCTTT TTCTTATTTA TGCGCTGCTT TTATGCAGAA ATGGACTTAG 117728 | | ||| ||| .......... .......... .......... .......... ........AC A-GGAGTTAT 463 AG 117730 || AG 465 hqPGS_C08HBa0037O11.1+_SGN-E312392+ (115209 115289,116777 116865,117056 117277) ******************************************************************************** EST sequence 94 +strand 417 n (File: SGN-E317665+) 1 TTTCAGGTTA TTATTCCGAG ATGTCAAGAG TGTACGTTGG AAATCTTGAT CCTAGGGTCA 61 CTGAAAGAGA ACTAGAAGAT GAATTCCGTG TCTTTGGAGT TATAAGAAGT GTTTGGGTTG 121 CAAGACGCCC ACCTGGTTAT GCCTTTATTG ACTTTGATGA CCGTAGAGAT GCACAAGACG 181 CAATCAGGGA TCTGGATGGT CAGAATGGAT GGAGAGTGGA GCTCTCACAT AATTCTAGAG 241 GAGAAAGGGG TGGGGGCCGT GGAGGGGGTC GTGGTCGTTC TGGAGGTTCT GATTTGAAGT 301 GCTATGAGTG TGGTGAGTCT GGTCATTTTG CTCGTGAATG CAGAGTGCGA GGAGGTCCAC 361 GTCCTGTTAA ACGTACAAGT CGTATCCCCC CTAGATATCG GAGGAGTCCA AGTTATG Predicted gene structure (within gDNA segment 114449 to 118604): Exon 1 115209 115289 ( 81 n); cDNA 29 109 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 (s: 0.90), Pa: 0.855 (s: 0.90) Exon 2 116777 116865 ( 89 n); cDNA 110 198 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 (s: 0.82), Pa: 0.862 (s: 0.88) Exon 3 117056 117274 ( 219 n); cDNA 199 417 ( 219 n); score: 0.854 MATCH C08HBa0037O11.1+ SGN-E317665+ 0.861 389 0.933 C PGS_C08HBa0037O11.1+_SGN-E317665+ (115209 115289,116777 116865,117056 117274) Alignment (genomic DNA sequence = upper lines): AGTCTATGTT GGAAATCTGG ACCCTAGGGT CAGTGAAAGA GAGCTTGAAG ATGAATTCCG 115268 ||| || ||| |||||||| | | |||||||| || ||||||| || || |||| |||||||||| AGTGTACGTT GGAAATCTTG ATCCTAGGGT CACTGAAAGA GAACTAGAAG ATGAATTCCG 88 CATCTTTGGA GTTATAAGAA GGTAAAGGAA GTTCCAAGAT TTACATCTCT TCATGATTAA 115328 |||||||| |||||||||| | TGTCTTTGGA GTTATAAGAA G......... .......... .......... .......... 109 TATGAATGGC TGTATTTGAC AACTGAATCT TCCCCTTATT ATTTCCCTTC ATCCTCACCA 115388 .......... .......... .......... .......... .......... .......... 109 TCCCTTGTTG AAATTGAGTC ATTAAATTAC CCATCATAAT TGACATTTGT GCAATTTGTT 115448 .......... .......... .......... .......... .......... .......... 109 CTGTTGTTGG TTTTAATTTG TTGAGGCGTA CCACCTTAGG CCATTGATGT TGCTACGTAA 115508 .......... .......... .......... .......... .......... .......... 109 GCCCATTAAT ACTGATTCCT TTATCTCCAT TATATGATGC TTATGATTAT TTGAAATTTG 115568 .......... .......... .......... .......... .......... .......... 109 GTTCAAATTG GTTCTTTTAG GAGTAGGGTG GAAGACATAA ACAACTTATA ATAATATTAT 115628 .......... .......... .......... .......... .......... .......... 109 TTTACTTTTT TTTTTGGATA AGAATGATAT CTAAGACACT GTGTCCACCT CGATTATTCC 115688 .......... .......... .......... .......... .......... .......... 109 ACCCAATACT TGCTACAATC TCTCATCAGT AAAGGTACCA GTTAATTAAG TCTACCGAGG 115748 .......... .......... .......... .......... .......... .......... 109 CTTAGGCAGA TGGGAAGAAA TGATCTAGTT TTTTTTTTGT CTCTGTGGGT ATTTGAACCT 115808 .......... .......... .......... .......... .......... .......... 109 TGGTCTTCAA TGAAGGTTTC TCTCCTGGGA TTTTACAAAG GATGGAAAGA TGCTTCATGT 115868 .......... .......... .......... .......... .......... .......... 109 CTACCTTTCT GGCCATGCAT AATTTTTTAT TGAACTAAAT TTTATTCTGG TCTTGGTTGA 115928 .......... .......... .......... .......... .......... .......... 109 AGAGGAACAG GGTTGTGATG AGCAAGTTGA ACAGAAAGAA AAACAAGTTG ACCTCTCTCT 115988 .......... .......... .......... .......... .......... .......... 109 GTATTGTTAT TCTTTGCAAA ATGAGTGAAC ATGTTACAAA TATTGTTCAC CGATCAAAAA 116048 .......... .......... .......... .......... .......... .......... 109 AATGAACATG TTATAGATAT TGTGGTTGAG CAAATTAAGT TGCATTTGCT GGAAAAGTCT 116108 .......... .......... .......... .......... .......... .......... 109 AAAAGTGGAA AGAACAGTTT AGGAGTGACC CATTGAAAAG AAAAGAATCC TGTAAGCAAC 116168 .......... .......... .......... .......... .......... .......... 109 CAGAAGGAAA TGAACATATT TTTACATTTT AAATTAATTG GCAGGGGGGG GGGGGATTCT 116228 .......... .......... .......... .......... .......... .......... 109 TGAAGGTAGT TCATACGAGC TAAAGTTTTA CTTCAGTCTT CAGTTGAATA TCATCAGAAA 116288 .......... .......... .......... .......... .......... .......... 109 CATTATCTGT GATTGTACTT TTGTGGAAAG AGGAACTATC ATGAGAATGG TTATTGAAGT 116348 .......... .......... .......... .......... .......... .......... 109 TTATGCTTTT AGCAAATGCT TATGTAAATA GTTCTGTGAA AATAGTGCTT GGGCTAGAGT 116408 .......... .......... .......... .......... .......... .......... 109 AGTACTAGAA TGGGTGACTC CATGAGGACA GGGATAGAGT AGTACTAGAA TGGGTGACTC 116468 .......... .......... .......... .......... .......... .......... 109 CATGGGAAGT CCTCATGCTC CATCTCTGCT TTACATAGTT ACCATTCCCC GAAAAAGAAA 116528 .......... .......... .......... .......... .......... .......... 109 AATGTAAAGA TCACGTAATC TCAAGTTATT TTTTTGCATG AACATTATCC CTACCATACA 116588 .......... .......... .......... .......... .......... .......... 109 CAATGAAGTC ATACATTTTC CTTTGTTAGA TGAAGACCTG GGAGTCTAGC CTGGCTAGGT 116648 .......... .......... .......... .......... .......... .......... 109 GGAGCCATTT GCTCATAAGT TTTTATCTCT TAAGAGACTT AGTTGCAGTT CACCTACAAT 116708 .......... .......... .......... .......... .......... .......... 109 CTTAGACATA TTTTATGGTA TTCAACTGCT ACAAGTCCAT CATTCCTAAC TCACAAATTT 116768 .......... .......... .......... .......... .......... .......... 109 GTTTACAGTG TTTGGGTTGC AAGACGCCCC CCTGGCTACG CTTTTATTGA CTTCGATGAT 116828 || |||||||||| ||||||||| ||||| || | | |||||||| ||| ||||| ........TG TTTGGGTTGC AAGACGCCCA CCTGGTTATG CCTTTATTGA CTTTGATGAC 161 CGGCGGGATG CACAAGATGC AATCAAAGAG CTGGATGGTA TGGCTTTTTG TCTTTGTTCA 116888 || | |||| ||||||| || ||||| || ||||||| CGTAGAGATG CACAAGACGC AATCAGGGAT CTGGATG... .......... .......... 198 TGGTCATGCT ATAATTGGCC TTTCTCTGAG ATAAAACCCC AATTTAGTTA GTCTATACAT 116948 .......... .......... .......... .......... .......... .......... 198 GTGTTTCTGT CTATTTGTTT CTTGCCATAG CATTTCTAAA CACTGGTGAT ATGTTGAGCT 117008 .......... .......... .......... .......... .......... .......... 198 ACGAAGCAAT CCTTTGATGG AAATTTATCC CTGCTTCTAT GACATAGGTA AGAATGGATG 117068 || |||||||||| .......... .......... .......... .......... .......GTC AGAATGGATG 211 GAGAGTGGAG CTTTCACATA ATTCTAGAGG TGGAGGTGGT GGGGGCCGTG GAGGAGGTCG 117128 |||||||||| || ||||||| |||||||||| | | | ||| |||||||||| |||| ||||| GAGAGTGGAG CTCTCACATA ATTCTAGAGG AGAAAGGGGT GGGGGCCGTG GAGGGGGTCG 271 AGGTCGATCT GGAGGCTCTG ATTTGAAGTG CTACGAATGT GGTGAATCAG GTCATTTTGC 117188 ||||| ||| ||||| |||| |||||||||| ||| || ||| ||||| || | |||||||||| TGGTCGTTCT GGAGGTTCTG ATTTGAAGTG CTATGAGTGT GGTGAGTCTG GTCATTTTGC 331 TCGTGAGTGC AGAACGCGTG GGGGTCCAGG AGCTGGAAGA CGTAGAAGTC GGAGCCCTCC 117248 |||||| ||| ||| ||| | | |||||| | ||| | | |||| ||||| | | ||| || TCGTGAATGC AGAGTGCGAG GAGGTCCACG TCCTGTTAAA CGTACAAGTC GTATCCCCCC 391 TAGATACCGC AGGAGCCCAA GTTATG 117274 |||||| || ||||| |||| |||||| TAGATATCGG AGGAGTCCAA GTTATG 417 hqPGS_C08HBa0037O11.1+_SGN-E317665+ (115209 115289,116777 116865,117056 117274) ******************************************************************************** EST sequence 123 -strand 697 n (File: SGN-E368463-) 1 CGCAATCAGG GATTTGGATG GTAAGAATGG ATGGAGAGTG GAGCTCTCAC ATAATTCTAG 61 AGGAGAAAGG GGTGGGGGCC GTGGAGGGGG TTGTGGTCGT TTTGGAGGTT TTGATTTGAA 121 GTGCTATGAG TGTGGTGAGT CTGGTCATTT TGCTCGTGAA TGCAGAGTGC GAGGAGGTCC 181 AGGTCCTGGT AAACGTAGAA GTTGTAGCCC CCCTAGATAT CGGAGGAGTC CAAGTTATGG 241 TCACAGGAGT TATAGTCCTT GTGGACGTTC CCCCAGGCGC CGAAGGGTGT CACCTTGTGG 301 CCGTAGTTAT AACCGATTTC CATATTGTGG AAAAGATGAA GTTCCTTACT CCAATGGAAA 361 TGGTGTCAGG GACCGAATCA AAAGCAGGAG CTGAACGGAG AAGTTGATTA CTTATTTCAT 421 TCAGGAGTTT TTCGATGTGT GTTAGCATTA CTATGCTTGA CTTGATCACA GCTGTGTAAG 481 TGAGGCCGTG CCCTCAACTT CAACGGCTTT AATTTTTGTA TGGTATTATA AGTGTGTTTT 541 TTTAATTTTT TAACTTTTTC CCCTTTTAAG AACCATTATG TTAGGGACAT AGACCTTTTG 601 TACTTTATGG CATTTATTAT TTTTAAAAAA AAAATATCCT AAAGAATGCT GCTAAAAATT 661 TACTTTTGTT TTTTTGAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 116255 to 123822): Exon 1 116847 116865 ( 19 n); cDNA 2 20 ( 19 n); score: 0.789 Intron 1 116866 117055 ( 190 n); Pd: 0.998 (s: 0), Pa: 0.862 (s: 0.90) Exon 2 117056 117281 ( 226 n); cDNA 21 246 ( 226 n); score: 0.854 Intron 2 117282 117411 ( 130 n); Pd: 0.997 (s: 0.84), Pa: 0.000 (s: 0.80) Exon 3 117412 117522 ( 111 n); cDNA 247 357 ( 111 n); score: 0.748 Intron 3 117523 117716 ( 194 n); Pd: 0.922 (s: 0.70), Pa: 0.992 (s: 0.66) Exon 4 117717 118043 ( 327 n); cDNA 358 675 ( 318 n); score: 0.641 Intron 4 118044 122176 (4133 n); Pd: 0.000 (s: 0.72), Pa: 0.977 (s: 0) Exon 5 122177 122196 ( 20 n); cDNA 676 695 ( 20 n); score: 0.700 MATCH C08HBa0037O11.1+ SGN-E368463- 0.731 703 1.009 C PGS_C08HBa0037O11.1+_SGN-E368463- (116847 116865,117056 117281,117412 117522,117717 118043,122177 122196) Alignment (genomic DNA sequence = upper lines): GCAATCAAAG AGCTGGATGG TATGGCTTTT TGTCTTTGTT CATGGTCATG CTATAATTGG 116906 ||||||| | | |||||| GCAATCAGGG ATTTGGATG. .......... .......... .......... .......... 20 CCTTTCTCTG AGATAAAACC CCAATTTAGT TAGTCTATAC ATGTGTTTCT GTCTATTTGT 116966 .......... .......... .......... .......... .......... .......... 20 TTCTTGCCAT AGCATTTCTA AACACTGGTG ATATGTTGAG CTACGAAGCA ATCCTTTGAT 117026 .......... .......... .......... .......... .......... .......... 20 GGAAATTTAT CCCTGCTTCT ATGACATAGG TAAGAATGGA TGGAGAGTGG AGCTTTCACA 117086 | |||||||||| |||||||||| |||| ||||| .......... .......... .........G TAAGAATGGA TGGAGAGTGG AGCTCTCACA 51 TAATTCTAGA GGTGGAGGTG GTGGGGGCCG TGGAGGAGGT CGAGGTCGAT CTGGAGGCTC 117146 |||||||||| || | | | | |||||||||| |||||| ||| | ||||| | |||||| | TAATTCTAGA GGAGAAAGGG GTGGGGGCCG TGGAGGGGGT TGTGGTCGTT TTGGAGGTTT 111 TGATTTGAAG TGCTACGAAT GTGGTGAATC AGGTCATTTT GCTCGTGAGT GCAGAACGCG 117206 |||||||||| ||||| || | ||||||| || ||||||||| |||||||| | ||||| ||| TGATTTGAAG TGCTATGAGT GTGGTGAGTC TGGTCATTTT GCTCGTGAAT GCAGAGTGCG 171 TGGGGGTCCA GGAGCTGGAA GACGTAGAAG TCGGAGCCCT CCTAGATACC GCAGGAGCCC 117266 || |||||| || |||| | ||||||||| | | ||||| |||||||| | | ||||| || AGGAGGTCCA GGTCCTGGTA AACGTAGAAG TTGTAGCCCC CCTAGATATC GGAGGAGTCC 231 AAGTTATGGT CGTAGGTAAG AAACTGATGT ATCATTGACT AGGAATCTGT AACAATTTGA 117326 |||||||||| | || AAGTTATGGT CACAG..... .......... .......... .......... .......... 246 GATCCTTCCA ATATATGTGA TATTCTTTAC ATGGAATTTG CTGCTGTTCT CTCTGTTTCT 117386 .......... .......... .......... .......... .......... .......... 246 TCTGATTTTC ATCTCCCTGA AGCAGGAGTT ACAGTCCACG TGGGCGTTCC CCTAGGCGCC 117446 ||||| | ||||| | ||| |||||| || ||||||| .......... .......... .....GAGTT ATAGTCCTTG TGGACGTTCC CCCAGGCGCC 281 GAAGCCCGTC ACCACGTGGT CGCAGCTATA GCCGTTCTCC ATATCGAGGT CGAGAAGAAG 117506 |||| ||| ||| |||| || || |||| ||| | ||| |||| | || ||| |||| GAAGGGTGTC ACCTTGTGGC CGTAGTTATA ACCGATTTCC ATATTGTGGA AAAGATGAAG 341 CTCCATATGT TAATGGGTAA AGCCTCTATT TGAATATTTA GGGTTCTTTT CAATGTGAAC 117566 ||| || ||||| TTCCTTACTC CAATGG.... .......... .......... .......... .......... 357 ACAACTGAGA CCTCTCTTTT ATAATATATA TACATAGTTT AAGTCTTTGG ATATGCTACA 117626 .......... .......... .......... .......... .......... .......... 357 ACTTATTTTA TGAATGGACA TTTAATTGCT TTTTCCTAAA GATTATGATT AAGGTTCCCT 117686 .......... .......... .......... .......... .......... .......... 357 TTTTCTTATT TATGCGCTGC TTTTATGCAG AAATGGACTT AGAGAGTGTC ACAGAAGCCG 117746 |||||| | || || | || |||| | .......... .......... .......... AAATGGTGTC AGGGACCGAA TCAAAAGCAG 387 AAGCTGAATG AAAGAGATGA TAGCCTGACA TGTCCTGGAG TCTTTCGAT- T-TG-T-G-- 117800 ||||||| | | || ||| | | | | | |||| | ||||||| | || | | GAGCTGAACG GAGAAGTTGA TTACTTATTT CATTCAGGAG TTTTTCGATG TGTGTTAGCA 447 TTACTGTCCT TGACTTAATC ACAACTGTGT AAGTGAGGCC ATGCCCTCAG CTTAAACTGG 117860 ||||| | || |||||| ||| ||| |||||| |||||||||| |||||||| ||| ||| TTACTATGCT TGACTTGATC ACAGCTGTGT AAGTGAGGCC GTGCCCTCAA CTTCAAC--- 504 TGGTTTTGGT TAAGTTTAAG TTCTTGCTTT GGTGTCGTTA GTGTTAGTTT TATTTTTACT 117920 || | | ||| ||| | | || | | | | | ||||| ||| || |||| | -GG--CT--T TAA-TTTTTG -T-ATGGTAT --TATAAGT- GTGTT-TTTT TAATTTT-TT 551 CAATGTTACC CTTTTTAAGA ACCTAATATC ATAGGGATTT ATA--TGTTG GATTTTATGG 117978 | | || || | |||||||| ||| | ||| |||||| | | | | ||| | ||||||| AACTTTTTCC CCTTTTAAGA ACC-ATTATG TTAGGGACAT AGACCTTTTG TACTTTATGG 610 TAGTTGTTAT TTTTTATGAA GAAA-ATCAC AAAGAATGTT GCTAAATATT AATGTTTTGT 118037 | || |||| |||| | || ||| ||| |||||||| | |||||| ||| | |||||| CATTTATTAT TTTTAAAAAA AAAATATCCT AAAGAATGCT GCTAAAAATT TA-CTTTTGT 669 TTTCTTGTGC CGAGGTGTCT TCCTGGTACT GCTTCATTGG TTTTCTGCTT CTACACTCTG 118097 ||| || TTTTTT.... .......... .......... .......... .......... .......... 675 TGGTTTCATT CTTCACTGCC CTGCTGCGGG ATCTTCAATT TTGAGGATTG TGGATCCCAG 118157 .......... .......... .......... .......... .......... .......... 675 CTGGCTACAT TGCTAGATGC TTCTGTTTCT TGAATCTCTG TGGATATGAC GCGCCTCTCC 118217 .......... .......... .......... .......... .......... .......... 675 TCAAATTATA GTGGTATTTC TTTAAGTTCA TATTAAGGAT GAGGAATGAC ATGACACGCG 118277 .......... .......... .......... .......... .......... .......... 675 ACTGGCAGGT ACAATCTGTT CCAAGGAGTT TGGGGATTTG ATGTTCTCCT TTAAACTAAA 118337 .......... .......... .......... .......... .......... .......... 675 TTGTGAATGG TGCTCCTTAT GGGTTCATAG GGCAGTGTCC GAGTCTATGC TCCTGAGAGT 118397 .......... .......... .......... .......... .......... .......... 675 TCTGGTTCCC TTTTGACTTT ATATGTTAGC TGGCTTCATT TTGCTTTTTT GCTCCTTTTC 118457 .......... .......... .......... .......... .......... .......... 675 GCCCACTCTT TCAATATCAC CTGTCATATA TCAGTCCTCT TTTAAAAGAG TATTCTCCAT 118517 .......... .......... .......... .......... .......... .......... 675 AATTTCTTTC TGTCTATCAG GGATAAAGAG TTGGTTACAA TTTTATTTAA GTGTTCCCTT 118577 .......... .......... .......... .......... .......... .......... 675 TGAGAGTGAC TGATATCTTT CAAAATTTTT ACTTTTTCTA CTTCTCCACA CAAAGCTAGT 118637 .......... .......... .......... .......... .......... .......... 675 GTTTTGTTTT AAAGGTGCCC CTTGTACCCC CCTCCCTTTT TTACCTTAAA AAACAGTCAT 118697 .......... .......... .......... .......... .......... .......... 675 ATCTATTTCT GTTAAACTTC ATCGTTCTTT TATCAATTAA GTTCTCTTTT TTCATTATCT 118757 .......... .......... .......... .......... .......... .......... 675 GACATACATA GTGTTGGGTG TCTGTTAGTA GTTTCGCTTA TCAAAGTTGT AGAACATGCA 118817 .......... .......... .......... .......... .......... .......... 675 TGAATGTAGA GGACCGCTCG CCATTGGCCT TTCCAGTAGG AGAGTTTGCT TTGACTGCCT 118877 .......... .......... .......... .......... .......... .......... 675 GCACCCAAGA TGTTCAGCTG ATTGAGATTC TCGTCTTTGA GATATGGCCT CACTGCTCTG 118937 .......... .......... .......... .......... .......... .......... 675 GGTAATTCTT ACACCAGTTT ACATCAATTA TTCTAGTATA TCTGTGCAGT AATTCACTAG 118997 .......... .......... .......... .......... .......... .......... 675 CGATTGACTG AAGTTCAATC ATGTACGTCT CTTTGATTGC TCCAGTCCTT TTTCTGTCCA 119057 .......... .......... .......... .......... .......... .......... 675 TTTTGCTAGA AACCAATTCT ATATTGATAT ATCTGGATAT GTTCTAAATT TCTGTTTCCT 119117 .......... .......... .......... .......... .......... .......... 675 ACTTCTTTTG TCTGTTTATG CTCTTTATAA GCATTGTTTT TCTTGATTTG AATGTGATAG 119177 .......... .......... .......... .......... .......... .......... 675 AGTTTGGATT GGAACTCCTT TTTCTCTAAT TTCATTGCGT CCAAAGGCGT ATGATGATAA 119237 .......... .......... .......... .......... .......... .......... 675 ATGCTTTTAC CCTAAATTGT GGTTGATGGG ATTTTTGAGG AATTAAAGTC GTATCTATGC 119297 .......... .......... .......... .......... .......... .......... 675 CAACATTCTT TAAATGGCTG TATCAAGTGA AAATCCCTAT TGGAATAGCT GAAAATATCT 119357 .......... .......... .......... .......... .......... .......... 675 GTATGGATAT TTAGAAGTTT TTCCACTTAC CACCAGTAGT TGTGCGAGTG GAATTACCCA 119417 .......... .......... .......... .......... .......... .......... 675 ACTAGACCTG AGTCAGCCTG AACTGTTTTG CGGTTCTTAT GGTTTGAGTG AGACTTTACT 119477 .......... .......... .......... .......... .......... .......... 675 ATCGACTATC TTCAATGAAG GTCCTATAAA ATGTAGCAAT GAATGTTGTA TAATAATGCA 119537 .......... .......... .......... .......... .......... .......... 675 TAATTAGCAG AGATGATAAC TTAAAAGATT GCTGAAAATT AAGTTTATGA ATAGGACTGT 119597 .......... .......... .......... .......... .......... .......... 675 ATGTGTATTA GGAAGTGCAT GGCATATAAT ATATTTATGT TGCTTGATCT ACTACGTTTG 119657 .......... .......... .......... .......... .......... .......... 675 TCAATCAACA TCGACTTAGG TGATCAATCA AATACACCAT TAAATTGCAT TCATTATTAA 119717 .......... .......... .......... .......... .......... .......... 675 TGTACTATTG ACCATCCATA GGCTTCTTAA TGTTTGCTCA TGTGCCACAT TGATACAAAA 119777 .......... .......... .......... .......... .......... .......... 675 TATCCTCAAA GTATTGGAAA TGATACAAAA TTATCCTCCA TCCACCTATT GGCTCCAAAA 119837 .......... .......... .......... .......... .......... .......... 675 TATCCTTTTT ACTCACCTAT TGGGTTCAAA ATACCATTAT CATCAATCTT TTGGTTTAAA 119897 .......... .......... .......... .......... .......... .......... 675 ATTGATCACT TATTTAACGA TTTTATATTT AAATATTTTT TTAAATACAT GGCGCTCAAC 119957 .......... .......... .......... .......... .......... .......... 675 TATTTGTTAT AATATAACTT ATTAGTGTAA TTTATAAATC AATCAACTAT CCACCCATTA 120017 .......... .......... .......... .......... .......... .......... 675 CTAATTAAAT TTGTCTAAAT TAATAAACCC GTTATATTAT TAATGCAACA ACAGATTAGT 120077 .......... .......... .......... .......... .......... .......... 675 TACTGCCAAT TGAGTGTTTT TTTAAAATTT GATGCGAAAA TATCTATAGA AGTAAATTAT 120137 .......... .......... .......... .......... .......... .......... 675 CATACATTAA GTATCTAAAT AAAAATTACC GATAAATTTA AAAGTCTGAC TATGTTCATC 120197 .......... .......... .......... .......... .......... .......... 675 TTAATTATTC TTACATCTCA ATTATGTGAT GTTGCTTCAT AGGTAATTTT TTTTCAAAAT 120257 .......... .......... .......... .......... .......... .......... 675 AATATACTAA AGGTTTTAAA ACAAGTCATA AATATTTATA AAATTATATT TTAAAAAAGT 120317 .......... .......... .......... .......... .......... .......... 675 GCATGGTATA ATTCGGGATG TATTACTTCT TTACCTTTAA TCATAAATTT CTAATTCAAT 120377 .......... .......... .......... .......... .......... .......... 675 CTTGAAAGAA AGTGTCCTTC TAAATAAGCG GCTCAACCTA AATATAATTG GGGCTTCGAT 120437 .......... .......... .......... .......... .......... .......... 675 TCGGACTCGA ATAATTTTGG ATGTATCTAT AATTTCATCG TGTTTTAGTA GTGTTTATGA 120497 .......... .......... .......... .......... .......... .......... 675 TGATTTTGAT ATTATAATTG GATTATTAAT TGGGTGAGGT TTAGTTAGTA ATGAGTGGAA 120557 .......... .......... .......... .......... .......... .......... 675 AGTGGGTTGG TTTATAAATT ATATTAATAA ATTAAATTAT AACCAATTGT TGAACGCCAA 120617 .......... .......... .......... .......... .......... .......... 675 GTATTTTAAA AAATATTTAA AGACTTTAAT TTTAAAACAA TTAAAAAAAT TGGTCAATTT 120677 .......... .......... .......... .......... .......... .......... 675 TGAATTCAAA GGTGGATGAC AAGAGTATTT TGAAGTCAAC AGGTGAATGA AGGGTTATTT 120737 .......... .......... .......... .......... .......... .......... 675 TGTACCATTT TCAATACTTT AAAAGTATTT TAGGCTCTTT TTCATCTAAA AATTATGTTA 120797 .......... .......... .......... .......... .......... .......... 675 ATTCTTGTTT GCACTTAAAT AATGATTACT ACTAGTCGTA TAAAATAATG GATTCTCTTT 120857 .......... .......... .......... .......... .......... .......... 675 TGATCTCCTC CCACTTCAAA GCTACTTAAT ATGTCCATTA GAATTGGTCT TTAACTCTTT 120917 .......... .......... .......... .......... .......... .......... 675 ATATACCATT TCAATTATGC ATTTTTTGAA TGATTCTCCT ACATAATACA TAAGAATAAA 120977 .......... .......... .......... .......... .......... .......... 675 ATCCAATCGT AAGCTTAGTG CATTTCGTAC GTGAAAGCAA CTTCGATTAT CATGTACTTT 121037 .......... .......... .......... .......... .......... .......... 675 TTGTAGATAA ATGTGTTTGG CTTAAATATT TTATTTTATT TGTATTACAG GACAAACAGT 121097 .......... .......... .......... .......... .......... .......... 675 CATGGTAATT AGTAAATTTT GTAATTAATT AAGGTAAGTA CAAATTAAAA AATGAAGCAA 121157 .......... .......... .......... .......... .......... .......... 675 AACAATTAGT TAAAGTGCTT CAACCAGTTG AAATTACAGA TAAGATGAAG GAGATGAAGA 121217 .......... .......... .......... .......... .......... .......... 675 AACAGGAACA TGGTCTGAAT TATGACTCAT TAGTACGTGG CAATCATCAA GACCTATCAA 121277 .......... .......... .......... .......... .......... .......... 675 GGAAGATGTT TAATCTAAGC CACACATTTA AGAGATCAAA TCCCAACCAT CCATCTTAGA 121337 .......... .......... .......... .......... .......... .......... 675 AGACCTAGAA GTATCTACAA GGTCACGTGA GAAGCACAAA AAGGAATAAA AATTTGTTAT 121397 .......... .......... .......... .......... .......... .......... 675 AGAGGTTACA TAGACAACCA ATAGGATTTA GACAGATATA TTTGTATTTA GAATAATTTT 121457 .......... .......... .......... .......... .......... .......... 675 AATTCTTTTA ATTAGTTGAG TAGTATTTAA ATACATGTAT GTTGTACAGA GAAATACACA 121517 .......... .......... .......... .......... .......... .......... 675 AGCAATTCTT CTTCAATCTT CCATTGTTCT TCAATTTTTT CTTCATCGTA TCAGAGCAAC 121577 .......... .......... .......... .......... .......... .......... 675 AAATCAATTG ATCAATTTTA AGATTTCGTT TCAGCAATGG TAGGAGAAAC AACTGCTACA 121637 .......... .......... .......... .......... .......... .......... 675 ACTTCCACAC TCACTTCTGC ACAAACAGTC ACTGGAAACA CATCAGTGAT TGATCACAAT 121697 .......... .......... .......... .......... .......... .......... 675 CACCCTTATT ATCAGAAGCA TTCATGCTTC TGATGCTCCT GGTATGACTA TCGTGAATAA 121757 .......... .......... .......... .......... .......... .......... 675 TCCCTTTGAT GGAACAGGTT ATCAAGGATG GAAGAGATCT GTTCTTATAG CCTTGTCAGC 121817 .......... .......... .......... .......... .......... .......... 675 TAAAAACAAG CTGAGATTTA TCACCGGAAC ACAATCAATC CCAGCTGATG GTTCTCCAGA 121877 .......... .......... .......... .......... .......... .......... 675 TTTGCAGGCT TGGAATAGAT GCAGTGACAT GGTGACCTTG TGAATCTTGA ATTCATTATC 121937 .......... .......... .......... .......... .......... .......... 675 AAAGGAGATC GCAGACAGTG TGATCTACTC AAAAACTGTG AGAGAGCTAT GGATAAGCTT 121997 .......... .......... .......... .......... .......... .......... 675 GGAACACAGA TTTGGGCAGT CCAATGGTGC AAAATTGTAT CACCTGCAGA AGGAACTCAG 122057 .......... .......... .......... .......... .......... .......... 675 CATGTTAATT CAAGGCACAT CCAACATTGT AGGATACTTC ACCAAGTTGA AAAGACTATG 122117 .......... .......... .......... .......... .......... .......... 675 GGATGAACTA GATTCTCTAA ATACTAATGT CAAGTTTAAT TGTGTGTGCA TGTGTGAAGG 122177 | .......... .......... .......... .......... .......... .........G 676 AAAACAAAAG TTACAGAAA 122196 |||| |||| | | ||| AAAAAAAAAA AAAAAAAAA 695 hqPGS_C08HBa0037O11.1+_SGN-E368463- (116847 116865,117056 117281,117412 117522,117717 118043) ******************************************************************************** EST sequence 27 +strand 496 n (File: SGN-E339738+) 1 TTCCTGGTAC TGCTTCATTG GTTTTCTGCT TCTACACTCT GTGGTTTCAT TCTTCACTGC 61 CCTGCTGCGG GATCTTCAAT TTTGAGGATT GTGGATCCCA GCTGGCTACA TTGCTAGATG 121 CTTCTGTTTC TTGAATCTCT GTGGATATGA CGCGCCTCTC CTCAAATTAT AGTGGTATTT 181 CTTTAAGTTC ATATTAAGGA TGAGGAATGA CATGACACGC GACTGGCAGT AGTTTCGCTT 241 ATCAAAGTTG TAGAACATGC ATGAATGTAG AGGACCGCTC GCCATTGGCC TTTCCAGTAG 301 GAGAGTTTGC TTTGACTGCC TGCACCCAAG ATGTTCAGCT GATTGAGATT CTCGTCTTTG 361 AGATATGGCC TCACTGCTCT GGGACAAACA GTCATGATAA GATGAAGGAG ATGAAGAAAC 421 AGGAACATGG TCTGAATTAT GACTCATTAG TACGTGGCAA TCATCAAGAC CTATCAAGGA 481 AGATGTTTAA TCTAAG Predicted gene structure (within gDNA segment 117457 to 121906): Exon 1 118057 118285 ( 229 n); cDNA 1 229 ( 229 n); score: 1.000 Intron 1 118286 118785 ( 500 n); Pd: 0.608 (s: 1.00), Pa: 0.017 (s: 1.00) Exon 2 118786 118938 ( 153 n); cDNA 230 382 ( 153 n); score: 1.000 Intron 2 118939 121087 (2149 n); Pd: 0.991 (s: 1.00), Pa: 0.779 (s: 0) Exon 3 121088 121101 ( 14 n); cDNA 383 396 ( 14 n); score: 1.000 Intron 3 121102 121196 ( 95 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 4 121197 121296 ( 100 n); cDNA 397 496 ( 100 n); score: 1.000 MATCH C08HBa0037O11.1+ SGN-E339738+ 1.000 496 1.000 C PGS_C08HBa0037O11.1+_SGN-E339738+ (118057 118285,118786 118938,121088 121101,121197 121296) Alignment (genomic DNA sequence = upper lines): TTCCTGGTAC TGCTTCATTG GTTTTCTGCT TCTACACTCT GTGGTTTCAT TCTTCACTGC 118116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTGGTAC TGCTTCATTG GTTTTCTGCT TCTACACTCT GTGGTTTCAT TCTTCACTGC 60 CCTGCTGCGG GATCTTCAAT TTTGAGGATT GTGGATCCCA GCTGGCTACA TTGCTAGATG 118176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCTGCGG GATCTTCAAT TTTGAGGATT GTGGATCCCA GCTGGCTACA TTGCTAGATG 120 CTTCTGTTTC TTGAATCTCT GTGGATATGA CGCGCCTCTC CTCAAATTAT AGTGGTATTT 118236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGTTTC TTGAATCTCT GTGGATATGA CGCGCCTCTC CTCAAATTAT AGTGGTATTT 180 CTTTAAGTTC ATATTAAGGA TGAGGAATGA CATGACACGC GACTGGCAGG TACAATCTGT 118296 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTTTAAGTTC ATATTAAGGA TGAGGAATGA CATGACACGC GACTGGCAG. .......... 229 TCCAAGGAGT TTGGGGATTT GATGTTCTCC TTTAAACTAA ATTGTGAATG GTGCTCCTTA 118356 .......... .......... .......... .......... .......... .......... 229 TGGGTTCATA GGGCAGTGTC CGAGTCTATG CTCCTGAGAG TTCTGGTTCC CTTTTGACTT 118416 .......... .......... .......... .......... .......... .......... 229 TATATGTTAG CTGGCTTCAT TTTGCTTTTT TGCTCCTTTT CGCCCACTCT TTCAATATCA 118476 .......... .......... .......... .......... .......... .......... 229 CCTGTCATAT ATCAGTCCTC TTTTAAAAGA GTATTCTCCA TAATTTCTTT CTGTCTATCA 118536 .......... .......... .......... .......... .......... .......... 229 GGGATAAAGA GTTGGTTACA ATTTTATTTA AGTGTTCCCT TTGAGAGTGA CTGATATCTT 118596 .......... .......... .......... .......... .......... .......... 229 TCAAAATTTT TACTTTTTCT ACTTCTCCAC ACAAAGCTAG TGTTTTGTTT TAAAGGTGCC 118656 .......... .......... .......... .......... .......... .......... 229 CCTTGTACCC CCCTCCCTTT TTTACCTTAA AAAACAGTCA TATCTATTTC TGTTAAACTT 118716 .......... .......... .......... .......... .......... .......... 229 CATCGTTCTT TTATCAATTA AGTTCTCTTT TTTCATTATC TGACATACAT AGTGTTGGGT 118776 .......... .......... .......... .......... .......... .......... 229 GTCTGTTAGT AGTTTCGCTT ATCAAAGTTG TAGAACATGC ATGAATGTAG AGGACCGCTC 118836 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........T AGTTTCGCTT ATCAAAGTTG TAGAACATGC ATGAATGTAG AGGACCGCTC 280 GCCATTGGCC TTTCCAGTAG GAGAGTTTGC TTTGACTGCC TGCACCCAAG ATGTTCAGCT 118896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATTGGCC TTTCCAGTAG GAGAGTTTGC TTTGACTGCC TGCACCCAAG ATGTTCAGCT 340 GATTGAGATT CTCGTCTTTG AGATATGGCC TCACTGCTCT GGGTAATTCT TACACCAGTT 118956 |||||||||| |||||||||| |||||||||| |||||||||| || GATTGAGATT CTCGTCTTTG AGATATGGCC TCACTGCTCT GG........ .......... 382 TACATCAATT ATTCTAGTAT ATCTGTGCAG TAATTCACTA GCGATTGACT GAAGTTCAAT 119016 .......... .......... .......... .......... .......... .......... 382 CATGTACGTC TCTTTGATTG CTCCAGTCCT TTTTCTGTCC ATTTTGCTAG AAACCAATTC 119076 .......... .......... .......... .......... .......... .......... 382 TATATTGATA TATCTGGATA TGTTCTAAAT TTCTGTTTCC TACTTCTTTT GTCTGTTTAT 119136 .......... .......... .......... .......... .......... .......... 382 GCTCTTTATA AGCATTGTTT TTCTTGATTT GAATGTGATA GAGTTTGGAT TGGAACTCCT 119196 .......... .......... .......... .......... .......... .......... 382 TTTTCTCTAA TTTCATTGCG TCCAAAGGCG TATGATGATA AATGCTTTTA CCCTAAATTG 119256 .......... .......... .......... .......... .......... .......... 382 TGGTTGATGG GATTTTTGAG GAATTAAAGT CGTATCTATG CCAACATTCT TTAAATGGCT 119316 .......... .......... .......... .......... .......... .......... 382 GTATCAAGTG AAAATCCCTA TTGGAATAGC TGAAAATATC TGTATGGATA TTTAGAAGTT 119376 .......... .......... .......... .......... .......... .......... 382 TTTCCACTTA CCACCAGTAG TTGTGCGAGT GGAATTACCC AACTAGACCT GAGTCAGCCT 119436 .......... .......... .......... .......... .......... .......... 382 GAACTGTTTT GCGGTTCTTA TGGTTTGAGT GAGACTTTAC TATCGACTAT CTTCAATGAA 119496 .......... .......... .......... .......... .......... .......... 382 GGTCCTATAA AATGTAGCAA TGAATGTTGT ATAATAATGC ATAATTAGCA GAGATGATAA 119556 .......... .......... .......... .......... .......... .......... 382 CTTAAAAGAT TGCTGAAAAT TAAGTTTATG AATAGGACTG TATGTGTATT AGGAAGTGCA 119616 .......... .......... .......... .......... .......... .......... 382 TGGCATATAA TATATTTATG TTGCTTGATC TACTACGTTT GTCAATCAAC ATCGACTTAG 119676 .......... .......... .......... .......... .......... .......... 382 GTGATCAATC AAATACACCA TTAAATTGCA TTCATTATTA ATGTACTATT GACCATCCAT 119736 .......... .......... .......... .......... .......... .......... 382 AGGCTTCTTA ATGTTTGCTC ATGTGCCACA TTGATACAAA ATATCCTCAA AGTATTGGAA 119796 .......... .......... .......... .......... .......... .......... 382 ATGATACAAA ATTATCCTCC ATCCACCTAT TGGCTCCAAA ATATCCTTTT TACTCACCTA 119856 .......... .......... .......... .......... .......... .......... 382 TTGGGTTCAA AATACCATTA TCATCAATCT TTTGGTTTAA AATTGATCAC TTATTTAACG 119916 .......... .......... .......... .......... .......... .......... 382 ATTTTATATT TAAATATTTT TTTAAATACA TGGCGCTCAA CTATTTGTTA TAATATAACT 119976 .......... .......... .......... .......... .......... .......... 382 TATTAGTGTA ATTTATAAAT CAATCAACTA TCCACCCATT ACTAATTAAA TTTGTCTAAA 120036 .......... .......... .......... .......... .......... .......... 382 TTAATAAACC CGTTATATTA TTAATGCAAC AACAGATTAG TTACTGCCAA TTGAGTGTTT 120096 .......... .......... .......... .......... .......... .......... 382 TTTTAAAATT TGATGCGAAA ATATCTATAG AAGTAAATTA TCATACATTA AGTATCTAAA 120156 .......... .......... .......... .......... .......... .......... 382 TAAAAATTAC CGATAAATTT AAAAGTCTGA CTATGTTCAT CTTAATTATT CTTACATCTC 120216 .......... .......... .......... .......... .......... .......... 382 AATTATGTGA TGTTGCTTCA TAGGTAATTT TTTTTCAAAA TAATATACTA AAGGTTTTAA 120276 .......... .......... .......... .......... .......... .......... 382 AACAAGTCAT AAATATTTAT AAAATTATAT TTTAAAAAAG TGCATGGTAT AATTCGGGAT 120336 .......... .......... .......... .......... .......... .......... 382 GTATTACTTC TTTACCTTTA ATCATAAATT TCTAATTCAA TCTTGAAAGA AAGTGTCCTT 120396 .......... .......... .......... .......... .......... .......... 382 CTAAATAAGC GGCTCAACCT AAATATAATT GGGGCTTCGA TTCGGACTCG AATAATTTTG 120456 .......... .......... .......... .......... .......... .......... 382 GATGTATCTA TAATTTCATC GTGTTTTAGT AGTGTTTATG ATGATTTTGA TATTATAATT 120516 .......... .......... .......... .......... .......... .......... 382 GGATTATTAA TTGGGTGAGG TTTAGTTAGT AATGAGTGGA AAGTGGGTTG GTTTATAAAT 120576 .......... .......... .......... .......... .......... .......... 382 TATATTAATA AATTAAATTA TAACCAATTG TTGAACGCCA AGTATTTTAA AAAATATTTA 120636 .......... .......... .......... .......... .......... .......... 382 AAGACTTTAA TTTTAAAACA ATTAAAAAAA TTGGTCAATT TTGAATTCAA AGGTGGATGA 120696 .......... .......... .......... .......... .......... .......... 382 CAAGAGTATT TTGAAGTCAA CAGGTGAATG AAGGGTTATT TTGTACCATT TTCAATACTT 120756 .......... .......... .......... .......... .......... .......... 382 TAAAAGTATT TTAGGCTCTT TTTCATCTAA AAATTATGTT AATTCTTGTT TGCACTTAAA 120816 .......... .......... .......... .......... .......... .......... 382 TAATGATTAC TACTAGTCGT ATAAAATAAT GGATTCTCTT TTGATCTCCT CCCACTTCAA 120876 .......... .......... .......... .......... .......... .......... 382 AGCTACTTAA TATGTCCATT AGAATTGGTC TTTAACTCTT TATATACCAT TTCAATTATG 120936 .......... .......... .......... .......... .......... .......... 382 CATTTTTTGA ATGATTCTCC TACATAATAC ATAAGAATAA AATCCAATCG TAAGCTTAGT 120996 .......... .......... .......... .......... .......... .......... 382 GCATTTCGTA CGTGAAAGCA ACTTCGATTA TCATGTACTT TTTGTAGATA AATGTGTTTG 121056 .......... .......... .......... .......... .......... .......... 382 GCTTAAATAT TTTATTTTAT TTGTATTACA GGACAAACAG TCATGGTAAT TAGTAAATTT 121116 ||||||||| ||||| .......... .......... .......... .GACAAACAG TCATG..... .......... 396 TGTAATTAAT TAAGGTAAGT ACAAATTAAA AAATGAAGCA AAACAATTAG TTAAAGTGCT 121176 .......... .......... .......... .......... .......... .......... 396 TCAACCAGTT GAAATTACAG ATAAGATGAA GGAGATGAAG AAACAGGAAC ATGGTCTGAA 121236 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... ATAAGATGAA GGAGATGAAG AAACAGGAAC ATGGTCTGAA 436 TTATGACTCA TTAGTACGTG GCAATCATCA AGACCTATCA AGGAAGATGT TTAATCTAAG 121296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGACTCA TTAGTACGTG GCAATCATCA AGACCTATCA AGGAAGATGT TTAATCTAAG 496 hqPGS_C08HBa0037O11.1+_SGN-E339738+ (118057 118285,118786 118938,121088 121101,121197 121296) ******************************************************************************** EST sequence 23 +strand 470 n (File: SGN-E243832+) 1 ACAAAGCTAG TGTTTTGTTT TAAAGGTGCC CCTTGTACCC CCCTCCCTTT TTTACCTTAA 61 AAAACAGTCA TATCTATTTC TGTTAAACTT CATCGTTCTT TTATCAATTA AGTTCTCTTT 121 TTTCATTATC TGACATACAT AGTGTTGGGT GTCTGTTAGT AGTTTCGCTT ATCAAAGTTG 181 TAGAACATGC ATGAATGTAG AGGACCGCTC GCCATTGGCC TTTCCAGTAG GAGAGTTTGC 241 TTTGACTGCC TGCACCCAAG ATGTTCAGCT GATTGAGATT CTCGTCTTTG AGATATGGCC 301 TCACTGCTCT GGGACAAACA GTCATGGTAA TTAGTAAATT TTGTAATTAA TTAAGGTAAG 361 TACAAATTAA AAAATGAAGC AAAACAATTA GTTAAAGTGC TTCAACCAGT TGAAATTACA 421 GATAAAATGA AGGAGATGAA GAAACAGGAA CATGGTCTGA ATTATGACTC Predicted gene structure (within gDNA segment 118027 to 121855): Exon 1 118627 118938 ( 312 n); cDNA 1 312 ( 312 n); score: 1.000 Intron 1 118939 121087 (2149 n); Pd: 0.991 (s: 1.00), Pa: 0.779 (s: 1.00) Exon 2 121088 121245 ( 158 n); cDNA 313 470 ( 158 n); score: 0.994 MATCH C08HBa0037O11.1+ SGN-E243832+ 0.998 470 1.000 C PGS_C08HBa0037O11.1+_SGN-E243832+ (118627 118938,121088 121245) Alignment (genomic DNA sequence = upper lines): ACAAAGCTAG TGTTTTGTTT TAAAGGTGCC CCTTGTACCC CCCTCCCTTT TTTACCTTAA 118686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAGCTAG TGTTTTGTTT TAAAGGTGCC CCTTGTACCC CCCTCCCTTT TTTACCTTAA 60 AAAACAGTCA TATCTATTTC TGTTAAACTT CATCGTTCTT TTATCAATTA AGTTCTCTTT 118746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAGTCA TATCTATTTC TGTTAAACTT CATCGTTCTT TTATCAATTA AGTTCTCTTT 120 TTTCATTATC TGACATACAT AGTGTTGGGT GTCTGTTAGT AGTTTCGCTT ATCAAAGTTG 118806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATTATC TGACATACAT AGTGTTGGGT GTCTGTTAGT AGTTTCGCTT ATCAAAGTTG 180 TAGAACATGC ATGAATGTAG AGGACCGCTC GCCATTGGCC TTTCCAGTAG GAGAGTTTGC 118866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAACATGC ATGAATGTAG AGGACCGCTC GCCATTGGCC TTTCCAGTAG GAGAGTTTGC 240 TTTGACTGCC TGCACCCAAG ATGTTCAGCT GATTGAGATT CTCGTCTTTG AGATATGGCC 118926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGACTGCC TGCACCCAAG ATGTTCAGCT GATTGAGATT CTCGTCTTTG AGATATGGCC 300 TCACTGCTCT GGGTAATTCT TACACCAGTT TACATCAATT ATTCTAGTAT ATCTGTGCAG 118986 |||||||||| || TCACTGCTCT GG........ .......... .......... .......... .......... 312 TAATTCACTA GCGATTGACT GAAGTTCAAT CATGTACGTC TCTTTGATTG CTCCAGTCCT 119046 .......... .......... .......... .......... .......... .......... 312 TTTTCTGTCC ATTTTGCTAG AAACCAATTC TATATTGATA TATCTGGATA TGTTCTAAAT 119106 .......... .......... .......... .......... .......... .......... 312 TTCTGTTTCC TACTTCTTTT GTCTGTTTAT GCTCTTTATA AGCATTGTTT TTCTTGATTT 119166 .......... .......... .......... .......... .......... .......... 312 GAATGTGATA GAGTTTGGAT TGGAACTCCT TTTTCTCTAA TTTCATTGCG TCCAAAGGCG 119226 .......... .......... .......... .......... .......... .......... 312 TATGATGATA AATGCTTTTA CCCTAAATTG TGGTTGATGG GATTTTTGAG GAATTAAAGT 119286 .......... .......... .......... .......... .......... .......... 312 CGTATCTATG CCAACATTCT TTAAATGGCT GTATCAAGTG AAAATCCCTA TTGGAATAGC 119346 .......... .......... .......... .......... .......... .......... 312 TGAAAATATC TGTATGGATA TTTAGAAGTT TTTCCACTTA CCACCAGTAG TTGTGCGAGT 119406 .......... .......... .......... .......... .......... .......... 312 GGAATTACCC AACTAGACCT GAGTCAGCCT GAACTGTTTT GCGGTTCTTA TGGTTTGAGT 119466 .......... .......... .......... .......... .......... .......... 312 GAGACTTTAC TATCGACTAT CTTCAATGAA GGTCCTATAA AATGTAGCAA TGAATGTTGT 119526 .......... .......... .......... .......... .......... .......... 312 ATAATAATGC ATAATTAGCA GAGATGATAA CTTAAAAGAT TGCTGAAAAT TAAGTTTATG 119586 .......... .......... .......... .......... .......... .......... 312 AATAGGACTG TATGTGTATT AGGAAGTGCA TGGCATATAA TATATTTATG TTGCTTGATC 119646 .......... .......... .......... .......... .......... .......... 312 TACTACGTTT GTCAATCAAC ATCGACTTAG GTGATCAATC AAATACACCA TTAAATTGCA 119706 .......... .......... .......... .......... .......... .......... 312 TTCATTATTA ATGTACTATT GACCATCCAT AGGCTTCTTA ATGTTTGCTC ATGTGCCACA 119766 .......... .......... .......... .......... .......... .......... 312 TTGATACAAA ATATCCTCAA AGTATTGGAA ATGATACAAA ATTATCCTCC ATCCACCTAT 119826 .......... .......... .......... .......... .......... .......... 312 TGGCTCCAAA ATATCCTTTT TACTCACCTA TTGGGTTCAA AATACCATTA TCATCAATCT 119886 .......... .......... .......... .......... .......... .......... 312 TTTGGTTTAA AATTGATCAC TTATTTAACG ATTTTATATT TAAATATTTT TTTAAATACA 119946 .......... .......... .......... .......... .......... .......... 312 TGGCGCTCAA CTATTTGTTA TAATATAACT TATTAGTGTA ATTTATAAAT CAATCAACTA 120006 .......... .......... .......... .......... .......... .......... 312 TCCACCCATT ACTAATTAAA TTTGTCTAAA TTAATAAACC CGTTATATTA TTAATGCAAC 120066 .......... .......... .......... .......... .......... .......... 312 AACAGATTAG TTACTGCCAA TTGAGTGTTT TTTTAAAATT TGATGCGAAA ATATCTATAG 120126 .......... .......... .......... .......... .......... .......... 312 AAGTAAATTA TCATACATTA AGTATCTAAA TAAAAATTAC CGATAAATTT AAAAGTCTGA 120186 .......... .......... .......... .......... .......... .......... 312 CTATGTTCAT CTTAATTATT CTTACATCTC AATTATGTGA TGTTGCTTCA TAGGTAATTT 120246 .......... .......... .......... .......... .......... .......... 312 TTTTTCAAAA TAATATACTA AAGGTTTTAA AACAAGTCAT AAATATTTAT AAAATTATAT 120306 .......... .......... .......... .......... .......... .......... 312 TTTAAAAAAG TGCATGGTAT AATTCGGGAT GTATTACTTC TTTACCTTTA ATCATAAATT 120366 .......... .......... .......... .......... .......... .......... 312 TCTAATTCAA TCTTGAAAGA AAGTGTCCTT CTAAATAAGC GGCTCAACCT AAATATAATT 120426 .......... .......... .......... .......... .......... .......... 312 GGGGCTTCGA TTCGGACTCG AATAATTTTG GATGTATCTA TAATTTCATC GTGTTTTAGT 120486 .......... .......... .......... .......... .......... .......... 312 AGTGTTTATG ATGATTTTGA TATTATAATT GGATTATTAA TTGGGTGAGG TTTAGTTAGT 120546 .......... .......... .......... .......... .......... .......... 312 AATGAGTGGA AAGTGGGTTG GTTTATAAAT TATATTAATA AATTAAATTA TAACCAATTG 120606 .......... .......... .......... .......... .......... .......... 312 TTGAACGCCA AGTATTTTAA AAAATATTTA AAGACTTTAA TTTTAAAACA ATTAAAAAAA 120666 .......... .......... .......... .......... .......... .......... 312 TTGGTCAATT TTGAATTCAA AGGTGGATGA CAAGAGTATT TTGAAGTCAA CAGGTGAATG 120726 .......... .......... .......... .......... .......... .......... 312 AAGGGTTATT TTGTACCATT TTCAATACTT TAAAAGTATT TTAGGCTCTT TTTCATCTAA 120786 .......... .......... .......... .......... .......... .......... 312 AAATTATGTT AATTCTTGTT TGCACTTAAA TAATGATTAC TACTAGTCGT ATAAAATAAT 120846 .......... .......... .......... .......... .......... .......... 312 GGATTCTCTT TTGATCTCCT CCCACTTCAA AGCTACTTAA TATGTCCATT AGAATTGGTC 120906 .......... .......... .......... .......... .......... .......... 312 TTTAACTCTT TATATACCAT TTCAATTATG CATTTTTTGA ATGATTCTCC TACATAATAC 120966 .......... .......... .......... .......... .......... .......... 312 ATAAGAATAA AATCCAATCG TAAGCTTAGT GCATTTCGTA CGTGAAAGCA ACTTCGATTA 121026 .......... .......... .......... .......... .......... .......... 312 TCATGTACTT TTTGTAGATA AATGTGTTTG GCTTAAATAT TTTATTTTAT TTGTATTACA 121086 .......... .......... .......... .......... .......... .......... 312 GGACAAACAG TCATGGTAAT TAGTAAATTT TGTAATTAAT TAAGGTAAGT ACAAATTAAA 121146 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GACAAACAG TCATGGTAAT TAGTAAATTT TGTAATTAAT TAAGGTAAGT ACAAATTAAA 371 AAATGAAGCA AAACAATTAG TTAAAGTGCT TCAACCAGTT GAAATTACAG ATAAGATGAA 121206 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AAATGAAGCA AAACAATTAG TTAAAGTGCT TCAACCAGTT GAAATTACAG ATAAAATGAA 431 GGAGATGAAG AAACAGGAAC ATGGTCTGAA TTATGACTC 121245 |||||||||| |||||||||| |||||||||| ||||||||| GGAGATGAAG AAACAGGAAC ATGGTCTGAA TTATGACTC 470 hqPGS_C08HBa0037O11.1+_SGN-E243832+ (118627 118938,121088 121245) ******************************************************************************** EST sequence 76 +strand 546 n (File: SGN-E247996+) 1 GTCTTCCTGG TACTGCTTCA TTGGTTTTCT GCTGTCTACA CTCTGTGGTT TCATTCTTCA 61 CTGCCCTGCT GCGGGATCTT CAATTTTGAG GATTGTGGAT CCCAGCTGGC TACATTGCTA 121 GATGCTTCTG TTTCTTGAAT CTCTGTGGAT ATGACGCGCC TCTCCTCAAA TTATAGTGGT 181 ATTTCTTTAA GTTCATATTA AGGATGAGGA ATGACATGAC ACGCGACTGG CAGGTACAAT 241 CTGTTCCAAG GAGTTTGGGG ATTTGATGTT CTCCTTTAAA CTAAATTGTG AATGGTGCTC 301 CTTATGGGTT CATAGGGCAG TGTCCGAGTC TATGCTCCTG AGAGTTCTGG TTCCCTTTTG 361 ACTTTATATG TTAGCTGGCT TCATTTTGCT TTTTTGCTCC TTTTCGCCCA CTCTTTCAAT 421 ATCACCTGTC ATATATCAGT CCTCTTTTAA AAGAGTATTC TCCATAATTT CTTTCTGTCT 481 ATCAGGGATA AAGAGTTGGT TACAATTTTA TTTAAGTGTT CCCTTTGAGA GTGACTGATA 541 TCTTTC Predicted gene structure (within gDNA segment 117454 to 119208): Exon 1 118054 118598 ( 545 n); cDNA 1 546 ( 546 n); score: 0.995 MATCH C08HBa0037O11.1+ SGN-E247996+ 0.995 545 0.998 C PGS_C08HBa0037O11.1+_SGN-E247996+ (118054 118598) Alignment (genomic DNA sequence = upper lines): GTCTTCCTGG TACTGCTTCA TTGGTTTTCT GCT-TCTACA CTCTGTGGTT TCATTCTTCA 118112 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GTCTTCCTGG TACTGCTTCA TTGGTTTTCT GCTGTCTACA CTCTGTGGTT TCATTCTTCA 60 CTGCCCTGCT GCGGGATCTT CAATTTTGAG GATTGTGGAT CCCAGCTGGC TACATTGCTA 118172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCCTGCT GCGGGATCTT CAATTTTGAG GATTGTGGAT CCCAGCTGGC TACATTGCTA 120 GATGCTTCTG TTTCTTGAAT CTCTGTGGAT ATGACGCGCC TCTCCTCAAA TTATAGTGGT 118232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTTCTG TTTCTTGAAT CTCTGTGGAT ATGACGCGCC TCTCCTCAAA TTATAGTGGT 180 ATTTCTTTAA GTTCATATTA AGGATGAGGA ATGACATGAC ACGCGACTGG CAGGTACAAT 118292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTTTAA GTTCATATTA AGGATGAGGA ATGACATGAC ACGCGACTGG CAGGTACAAT 240 CTGTTCCAAG GAGTTTGGGG ATTTGATGTT CTCCTTTAAA CTAAATTGTG AATGGTGCTC 118352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCCAAG GAGTTTGGGG ATTTGATGTT CTCCTTTAAA CTAAATTGTG AATGGTGCTC 300 CTTATGGGTT CATAGGGCAG TGTCCGAGTC TATGCTCCTG AGAGTTCTGG TTCCCTTTTG 118412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATGGGTT CATAGGGCAG TGTCCGAGTC TATGCTCCTG AGAGTTCTGG TTCCCTTTTG 360 ACTTTATATG TTAGCTGGCT TCATTTTGCT TTTTTGCTCC TTTTCGCCCA CTCTTTCAAT 118472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTATATG TTAGCTGGCT TCATTTTGCT TTTTTGCTCC TTTTCGCCCA CTCTTTCAAT 420 ATCACCTGTC ATATATCAGT CCTCTTTTAA AAGAGTATTC TCCATAATTT CTTTCTGTCT 118532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACCTGTC ATATATCAGT CCTCTTTTAA AAGAGTATTC TCCATAATTT CTTTCTGTCT 480 ATCAGGGATA AAGAGTTGGT TACAATTTTA TTTAAGTGTT CCCTTTGAGA GTGACTGATA 118592 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGGGATA AAGAGTTGGT TACAATTTTA TTTAAGTGTT CCCTTTGAGA GTGACTGATA 540 TCTTTC 118598 |||||| TCTTTC 546 hqPGS_C08HBa0037O11.1+_SGN-E247996+ (118054 118598) ******************************************************************************** EST sequence 26 +strand 637 n (File: SGN-E252467+) 1 CTTCAATTTT GAGGATTGTG GATCCCAGCT GGCTACATTG CTAGATGCTT CTGTTTCTTG 61 AATCTCTGTG GATATGACGC GCCTCTCCTC AAATTATAGT GGTATTTCTT TAAGTTCATA 121 TTAAGGATGA GGAATGACAT GACACGCGAC TGGCAGGTAC AATCTGTTCC AAGGAGTTTG 181 GGGATTTGAT GTTCTCCTTT AAACTAAATT GTGAATGGTG CTCCTTATGG GTTCATAGGG 241 CAGTGTCCGA GTCTATGCTC CTGAGAGTTC TGGTTCCCTT TTGACTTTAT ATGTTAGCTG 301 GCTTCATTTT GCTTTTTTGC TCCTTTTCGC CCACTCTTTC AATATCACCT GTCATATATC 361 AGTCCTCTTT TAAAAGAGTA TTCTCCATAA TTTCTTTCTG TCTATCAGGG ATAAAGAGTT 421 GGTTACAATT TTATTTAAGT GTTCCCTTTG AGAGTGACTG ATATCTTTCA AAATTTTTAC 481 TTTTTCTACT TCTCCACACA AAGCTAGTGT TTTGTTTTAA AGGTGCCCCT TGTACCCCCC 541 TCCCTTTTTT ACCTTTAAAA ACAGTCATAT CTATTTCTTG TAAACTTCAT CGTTCTTTTA 601 TCAATTAAGT TCTCTTTTTT CATTATCTGA CATACAT Predicted gene structure (within gDNA segment 117530 to 119376): Exon 1 118130 118766 ( 637 n); cDNA 1 637 ( 637 n); score: 0.995 MATCH C08HBa0037O11.1+ SGN-E252467+ 0.995 637 1.000 C PGS_C08HBa0037O11.1+_SGN-E252467+ (118130 118766) Alignment (genomic DNA sequence = upper lines): CTTCAATTTT GAGGATTGTG GATCCCAGCT GGCTACATTG CTAGATGCTT CTGTTTCTTG 118189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAATTTT GAGGATTGTG GATCCCAGCT GGCTACATTG CTAGATGCTT CTGTTTCTTG 60 AATCTCTGTG GATATGACGC GCCTCTCCTC AAATTATAGT GGTATTTCTT TAAGTTCATA 118249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTCTGTG GATATGACGC GCCTCTCCTC AAATTATAGT GGTATTTCTT TAAGTTCATA 120 TTAAGGATGA GGAATGACAT GACACGCGAC TGGCAGGTAC AATCTGTTCC AAGGAGTTTG 118309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGGATGA GGAATGACAT GACACGCGAC TGGCAGGTAC AATCTGTTCC AAGGAGTTTG 180 GGGATTTGAT GTTCTCCTTT AAACTAAATT GTGAATGGTG CTCCTTATGG GTTCATAGGG 118369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATTTGAT GTTCTCCTTT AAACTAAATT GTGAATGGTG CTCCTTATGG GTTCATAGGG 240 CAGTGTCCGA GTCTATGCTC CTGAGAGTTC TGGTTCCCTT TTGACTTTAT ATGTTAGCTG 118429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGTCCGA GTCTATGCTC CTGAGAGTTC TGGTTCCCTT TTGACTTTAT ATGTTAGCTG 300 GCTTCATTTT GCTTTTTTGC TCCTTTTCGC CCACTCTTTC AATATCACCT GTCATATATC 118489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCATTTT GCTTTTTTGC TCCTTTTCGC CCACTCTTTC AATATCACCT GTCATATATC 360 AGTCCTCTTT TAAAAGAGTA TTCTCCATAA TTTCTTTCTG TCTATCAGGG ATAAAGAGTT 118549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCCTCTTT TAAAAGAGTA TTCTCCATAA TTTCTTTCTG TCTATCAGGG ATAAAGAGTT 420 GGTTACAATT TTATTTAAGT GTTCCCTTTG AGAGTGACTG ATATCTTTCA AAATTTTTAC 118609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTACAATT TTATTTAAGT GTTCCCTTTG AGAGTGACTG ATATCTTTCA AAATTTTTAC 480 TTTTTCTACT TCTCCACACA AAGCTAGTGT TTTGTTTTAA AGGTGCCCCT TGTACCCCCC 118669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCTACT TCTCCACACA AAGCTAGTGT TTTGTTTTAA AGGTGCCCCT TGTACCCCCC 540 TCCCTTTTTT ACCTTAAAAA ACAGTCATAT CTATTTCTGT TAAACTTCAT CGTTCTTTTA 118729 |||||||||| ||||| |||| |||||||||| |||||||| |||||||||| |||||||||| TCCCTTTTTT ACCTTTAAAA ACAGTCATAT CTATTTCTTG TAAACTTCAT CGTTCTTTTA 600 TCAATTAAGT TCTCTTTTTT CATTATCTGA CATACAT 118766 |||||||||| |||||||||| |||||||||| ||||||| TCAATTAAGT TCTCTTTTTT CATTATCTGA CATACAT 637 hqPGS_C08HBa0037O11.1+_SGN-E252467+ (118130 118766) ******************************************************************************** EST sequence 92 +strand 790 n (File: SGN-E260487+) 1 GCGACTGGCA GGTACAATCT GTTCCAAGGA GTTTGGGGAT TTGATGTTCT CCTTTAAACT 61 AAATTGTGAA TGGTGCTCCT TATGGGTTCA TAGGGCAGTG TCCGAGTCTA TGCTCCTGAG 121 AGTTCTGGTT CCCTTTTGAC TTTATATGTT AGCTGGCTTC ATTTTGCTTT TTTGCTCCTT 181 TTCGCCCACT CTTTCAATAT CACCTGTCAT ATATCAGTCC TCTTTTAAAA GAGTATTCTC 241 CATAATTTCT TTCTGTCTAT CAGGGATAAA GAGTTGGTTA CAATTTTATT TAAGTGTTCC 301 CTTTGAGAGT GACTGATATC TTTCAAAATT TTTACTTTTT CTACTTCTCC ACACAAAGCT 361 AGTGTTTTGT TTTAAAGGTG CCCCTTGTAC CCCCCTCCCT TTTTTACCTT AAAAAACAGT 421 CATATCTATT TCTGTTAAAC TTCATCGTTC TTTTATCAAT TAAGTTCTCT TTTTTCATTA 481 TCTGACATAC ATAGTGTTGG GTGTCTGTTA GTAGTTTCGC TTATCAAAGT TGTAGAACAT 541 GCATGAATGT AGAGGACCGC TCGCCATTGG CCTTTCCAGT AGGAGAGTTT GCTTTGACTG 601 CCTGCACCCA AGATGTTCAG CTGATTGAGA TTCTCGTCTT TGAGATATGG CCTCACTGCT 661 CTGGGTAATT CTTACACCAG TTTACATCAA TTATTCTAGT ATATCTGTGC AGTAATTCAC 721 TAGCGATTGA CTGAAGTTTC ATCATGTACG TCTCTTTGAT TGCTCCAGTC CTTTTTCTGT 781 CCATTTTGCT Predicted gene structure (within gDNA segment 117675 to 119674): Exon 1 118275 119064 ( 790 n); cDNA 1 790 ( 790 n); score: 0.997 MATCH C08HBa0037O11.1+ SGN-E260487+ 0.997 790 1.000 C PGS_C08HBa0037O11.1+_SGN-E260487+ (118275 119064) Alignment (genomic DNA sequence = upper lines): GCGACTGGCA GGTACAATCT GTTCCAAGGA GTTTGGGGAT TTGATGTTCT CCTTTAAACT 118334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGACTGGCA GGTACAATCT GTTCCAAGGA GTTTGGGGAT TTGATGTTCT CCTTTAAACT 60 AAATTGTGAA TGGTGCTCCT TATGGGTTCA TAGGGCAGTG TCCGAGTCTA TGCTCCTGAG 118394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGTGAA TGGTGCTCCT TATGGGTTCA TAGGGCAGTG TCCGAGTCTA TGCTCCTGAG 120 AGTTCTGGTT CCCTTTTGAC TTTATATGTT AGCTGGCTTC ATTTTGCTTT TTTGCTCCTT 118454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTGGTT CCCTTTTGAC TTTATATGTT AGCTGGCTTC ATTTTGCTTT TTTGCTCCTT 180 TTCGCCCACT CTTTCAATAT CACCTGTCAT ATATCAGTCC TCTTTTAAAA GAGTATTCTC 118514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGCCCACT CTTTCAATAT CACCTGTCAT ATATCAGTCC TCTTTTAAAA GAGTATTCTC 240 CATAATTTCT TTCTGTCTAT CAGGGATAAA GAGTTGGTTA CAATTTTATT TAAGTGTTCC 118574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATTTCT TTCTGTCTAT CAGGGATAAA GAGTTGGTTA CAATTTTATT TAAGTGTTCC 300 CTTTGAGAGT GACTGATATC TTTCAAAATT TTTACTTTTT CTACTTCTCC ACACAAAGCT 118634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAGAGT GACTGATATC TTTCAAAATT TTTACTTTTT CTACTTCTCC ACACAAAGCT 360 AGTGTTTTGT TTTAAAGGTG CCCCTTGTAC CCCCCTCCCT TTTTTACCTT AAAAAACAGT 118694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTTTGT TTTAAAGGTG CCCCTTGTAC CCCCCTCCCT TTTTTACCTT AAAAAACAGT 420 CATATCTATT TCTGTTAAAC TTCATCGTTC TTTTATCAAT TAAGTTCTCT TTTTTCATTA 118754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATCTATT TCTGTTAAAC TTCATCGTTC TTTTATCAAT TAAGTTCTCT TTTTTCATTA 480 TCTGACATAC ATAGTGTTGG GTGTCTGTTA GTAGTTTCGC TTATCAAAGT TGTAGAACAT 118814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGACATAC ATAGTGTTGG GTGTCTGTTA GTAGTTTCGC TTATCAAAGT TGTAGAACAT 540 GCATGAATGT AGAGGACCGC TCGCCATTGG CCTTTCCAGT AGGAGAGTTT GCTTTGACTG 118874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGAATGT AGAGGACCGC TCGCCATTGG CCTTTCCAGT AGGAGAGTTT GCTTTGACTG 600 CCTGCACCCA AGATGTTCAG CTGATTGAGA TTCTCGTCTT TGAGATATGG CCTCACTGCT 118934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCACCCA AGATGTTCAG CTGATTGAGA TTCTCGTCTT TGAGATATGG CCTCACTGCT 660 CTGGGTAATT CTTACACCAG TTTACATCAA TTATTCTAGT ATATCTGTGC AGTAATTCAC 118994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGTAATT CTTACACCAG TTTACATCAA TTATTCTAGT ATATCTGTGC AGTAATTCAC 720 TAGCGATTGA CTGAAGTTCA ATCATGTACG TCTCTTTGAT TGCTCCAGTC CTTTTTCTGT 119054 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCGATTGA CTGAAGTTTC ATCATGTACG TCTCTTTGAT TGCTCCAGTC CTTTTTCTGT 780 CCATTTTGCT 119064 |||||||||| CCATTTTGCT 790 hqPGS_C08HBa0037O11.1+_SGN-E260487+ (118275 119064) ******************************************************************************** EST sequence 81 +strand 649 n (File: SGN-E344722+) 1 ACAATTTTAT TTAAGTGTTC CCTTTGAGAG TGACTGATAT CTTTCAAAAT TTTTACTTTT 61 TCTACTTCTC CACACAAAGC TAGTGTTTTG TTTTAAAGGT GCCCCTTGTA CCCCCCTCCC 121 TTTTTTACCT TAAAAAACAG TCATATCTAT TTCTGTTAAA CTTCATCGTT CTTTTATCAA 181 TTAAGTTCTC TTTTTTCATT ATCTGACATA CATAGTGTTG GGTGTCTGTT AGTAGTTTCG 241 CTTATCAAAG TTGTAGAACA TGCATGAATG TAGAGGACCG CTCGCCATTG GCCTTTCCAG 301 TAGGAGAGTT TGCTTTGACT GCCTGCACCC AAGATGTTCA GCTGATTGAG ATTCTCGTCT 361 TTGAGATATG GCCTCACTGC TCTGGGTAAT TCTTACACCA GTTTACATCA ATTATTCTAG 421 TATATCTGTG CAGTAATTCA CTAGCGATTG ACTGAAGTTC AATCATGTAC GTCTCTTTGA 481 TTGCTCCAGT CCTTTTTCTG TCCATTTTGC TAGAAACCAA TTCTATATTG ATATATCTGG 541 ATATGTTCTA AATTTCTGTT TCCTACTTCT TTTGTCTGTT TATGCTCTTT ATAGCATTGT 601 TTTTCTTGAT TTGAATGTGA TAGAGTTTGG ATTGGAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 117954 to 119921): Exon 1 118554 119191 ( 638 n); cDNA 1 637 ( 637 n); score: 0.998 PPA cDNA 638 649 MATCH C08HBa0037O11.1+ SGN-E344722+ 0.998 638 0.983 C PGS_C08HBa0037O11.1+_SGN-E344722+ (118554 119191) Alignment (genomic DNA sequence = upper lines): ACAATTTTAT TTAAGTGTTC CCTTTGAGAG TGACTGATAT CTTTCAAAAT TTTTACTTTT 118613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTTTAT TTAAGTGTTC CCTTTGAGAG TGACTGATAT CTTTCAAAAT TTTTACTTTT 60 TCTACTTCTC CACACAAAGC TAGTGTTTTG TTTTAAAGGT GCCCCTTGTA CCCCCCTCCC 118673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACTTCTC CACACAAAGC TAGTGTTTTG TTTTAAAGGT GCCCCTTGTA CCCCCCTCCC 120 TTTTTTACCT TAAAAAACAG TCATATCTAT TTCTGTTAAA CTTCATCGTT CTTTTATCAA 118733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTACCT TAAAAAACAG TCATATCTAT TTCTGTTAAA CTTCATCGTT CTTTTATCAA 180 TTAAGTTCTC TTTTTTCATT ATCTGACATA CATAGTGTTG GGTGTCTGTT AGTAGTTTCG 118793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGTTCTC TTTTTTCATT ATCTGACATA CATAGTGTTG GGTGTCTGTT AGTAGTTTCG 240 CTTATCAAAG TTGTAGAACA TGCATGAATG TAGAGGACCG CTCGCCATTG GCCTTTCCAG 118853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATCAAAG TTGTAGAACA TGCATGAATG TAGAGGACCG CTCGCCATTG GCCTTTCCAG 300 TAGGAGAGTT TGCTTTGACT GCCTGCACCC AAGATGTTCA GCTGATTGAG ATTCTCGTCT 118913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGAGAGTT TGCTTTGACT GCCTGCACCC AAGATGTTCA GCTGATTGAG ATTCTCGTCT 360 TTGAGATATG GCCTCACTGC TCTGGGTAAT TCTTACACCA GTTTACATCA ATTATTCTAG 118973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATATG GCCTCACTGC TCTGGGTAAT TCTTACACCA GTTTACATCA ATTATTCTAG 420 TATATCTGTG CAGTAATTCA CTAGCGATTG ACTGAAGTTC AATCATGTAC GTCTCTTTGA 119033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATCTGTG CAGTAATTCA CTAGCGATTG ACTGAAGTTC AATCATGTAC GTCTCTTTGA 480 TTGCTCCAGT CCTTTTTCTG TCCATTTTGC TAGAAACCAA TTCTATATTG ATATATCTGG 119093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTCCAGT CCTTTTTCTG TCCATTTTGC TAGAAACCAA TTCTATATTG ATATATCTGG 540 ATATGTTCTA AATTTCTGTT TCCTACTTCT TTTGTCTGTT TATGCTCTTT ATAAGCATTG 119153 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ATATGTTCTA AATTTCTGTT TCCTACTTCT TTTGTCTGTT TATGCTCTTT AT-AGCATTG 599 TTTTTCTTGA TTTGAATGTG ATAGAGTTTG GATTGGAA 119191 |||||||||| |||||||||| |||||||||| |||||||| TTTTTCTTGA TTTGAATGTG ATAGAGTTTG GATTGGAA 637 hqPGS_C08HBa0037O11.1+_SGN-E344722+ (118554 119191) Total number of EST alignments reported: 129 ________________________________________________________________________________ Predicted gene locations (22) in segment 1 to 124690: PGL 1 (- strand): 1463 1300 AGS-1 (1463 1300) SCR (e 0.860) Exon 1 1463 1300 ( 164 n); score: 0.860 PGS (1463 1300) SGN-E308440+ 3-phase translation of AGS-1 (-strand): . . . . . . 1463 GTCAAGTTGGACACAAATAGAAAGACATGTTCATATTATAATGTGTAAAAGCAATAATTT V K L D T N R K T C S Y Y N V - K Q - F S S W T Q I E R H V H I I M C K S N N F Q V G H K - K D M F I L - C V K A I I . . . . . . 1403 CGTAATGTTACATTTGTTATTGTGTTGTTTTGAAAGATACACATTTTGTTTTATTGAGTG R N V T F V I V L F - K I H I L F Y - V V M L H L L L C C F E R Y T F C F I E C S - C Y I C Y C V V L K D T H F V L L S . . . . . 1343 CAGTTGTTATCATTGACATTTATAAAGTTTGATTTCGTAAAAAA Q L L S L T F I K F D F V K S C Y H - H L - S L I S - K A V V I I D I Y K V - F R K K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1300 TTTTTTACGAAATCAAACTTTATAAATGTCAATGATAACAACTGCACTCAATAAAACAAA F F T K S N F I N V N D N N C T Q - N K F L R N Q T L - M S M I T T A L N K T K F Y E I K L Y K C Q - - Q L H S I K Q . . . . . . 1360 ATGTGTATCTTTCAAAACAACACAATAACAAATGTAACATTACGAAATTATTGCTTTTAC M C I F Q N N T I T N V T L R N Y C F Y C V S F K T T Q - Q M - H Y E I I A F T N V Y L S K Q H N N K C N I T K L L L L . . . . . 1420 ACATTATAATATGAACATGTCTTTCTATTTGTGTCCAACTTGAC T L - Y E H V F L F V S N L H Y N M N M S F Y L C P T - H I I I - T C L S I C V Q L D Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 6263 5022 AGS-1 (6263 6042,5279 5022) SCR (e 0.964 d 1.000 a 0.979,e 0.984) Exon 1 6263 6042 ( 222 n); score: 0.964 Intron 1 6041 5280 ( 762 n); Pd: 1.000 Pa: 0.979 Exon 2 5279 5022 ( 258 n); score: 0.984 PGS (6263 6042,5279 5022) SGN-E302081+ 3-phase translation of AGS-1 (-strand): . . . . . . 6263 AAACTTAGTATTTTCCTTCTCCTTTGCATAGTCCAAACTTCATTCTCTTCTTCTTCCCAT K L S I F L L L C I V Q T S F S S S S H N L V F S F S F A - S K L H S L L L P I T - Y F P S P L H S P N F I L F F F P . . . . . . 6203 CAACATTTGTCCTCTAGACACCTTTTGACAACTACCCCAAGCAACATAATCAAACAATAC Q H L S S R H L L T T T P S N I I K Q Y N I C P L D T F - Q L P Q A T - S N N T S T F V L - T P F D N Y P K Q H N Q T I . . . . . . 6143 CTTAACCCCCACAACAAAGCTAGAGCAAAACTTGGACTTCCACCACTCAAATGGAGCAAT L N P H N K A R A K L G L P P L K W S N L T P T T K L E Q N L D F H H S N G A I P - P P Q Q S - S K T W T S T T Q M E Q . . . . . : . 6083 AAATTAGCAAATTACGCAAGCTGGTGGGGACACCAACGACAG : GTGAGTTGTGAGTTGGTT K L A N Y A S W W G H Q R Q : V S C E L V N - Q I T Q A G G D T N D R : - V V S W F - I S K L R K L V G T P T T : G E L - V G . . . . . . 5261 CATTCTCGTGGCGACTACGGGGAGAACCTCTTTTGGGGGAGCGGAAAGGATTGGAAGCCA H S R G D Y G E N L F W G S G K D W K P I L V A T T G R T S F G G A E R I G S Q S F S W R L R G E P L L G E R K G L E A . . . . . . 5201 AGCGATGCTGTGACGATGTGGGCGAAAGAAAGACCTTATTATGATTATAAGAGCAATTCT S D A V T M W A K E R P Y Y D Y K S N S A M L - R C G R K K D L I M I I R A I L K R C C D D V G E R K T L L - L - E Q F . . . . . . 5141 TGCAAGAAAAATGAGCAATGCTTGCATTATACACAAATTATTTGGAAACAAAGCACAAGA C K K N E Q C L H Y T Q I I W K Q S T R A R K M S N A C I I H K L F G N K A Q E L Q E K - A M L A L Y T N Y L E T K H K . . . . . . 5081 GTTGGGTGTGCAAAAGTTCTATGCAAAACAGGAGATACTTTGATTAGTTGCAACTATGAT V G C A K V L C K T G D T L I S C N Y D L G V Q K F Y A K Q E I L - L V A T M S W V C K S S M Q N R R Y F D - L Q L - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-2_AGS-1_PPS_1 (6263 6042,5279 5022) (frame '1'; 480 bp, 160 residues) 1 KLSIFLLLCI VQTSFSSSSH QHLSSRHLLT TTPSNIIKQY LNPHNKARAK LGLPPLKWSN 61 KLANYASWWG HQRQVSCELV HSRGDYGENL FWGSGKDWKP SDAVTMWAKE RPYYDYKSNS 121 CKKNEQCLHY TQIIWKQSTR VGCAKVLCKT GDTLISCNYD PGL 3 (- strand): 9790 9002 AGS-1 (9790 9589,9495 9002) SCR (e 1.000 d 0.999 a 0.931,e 0.994) Exon 1 9790 9589 ( 202 n); score: 1.000 Intron 1 9588 9496 ( 93 n); Pd: 0.999 Pa: 0.931 Exon 2 9495 9002 ( 494 n); score: 0.994 PGS (9790 9589,9495 9002) SGN-E261055+ PGS (9790 9589,9495 9072) SGN-E262844+ PGS (9790 9589,9495 9073) SGN-E258563+ PGS (9790 9589,9495 9126) SGN-E254504+ PGS (9790 9589,9495 9475) SGN-E263452+ 3-phase translation of AGS-1 (-strand): . . . . . . 9790 TTTGCCAGCGATGACATCAACTCACTTGAAGAGTTAATTGGTCGGCTGAGAAGACTGAAG F A S D D I N S L E E L I G R L R R L K L P A M T S T H L K S - L V G - E D - R C Q R - H Q L T - R V N W S A E K T E . . . . . . 9730 GAGAACGTTGGATTTATCGCCAATCGTGTCACAGCAATTCAGGCAGGTCTCGACAGTTGG E N V G F I A N R V T A I Q A G L D S W R T L D L S P I V S Q Q F R Q V S T V G G E R W I Y R Q S C H S N S G R S R Q L . . . . . . 9670 CAGTCTGAGCAGATAAATAAAAAACTTTACTATCTTTCCTTCCTCTCCATTGTCTTTCTT Q S E Q I N K K L Y Y L S F L S I V F L S L S R - I K N F T I F P S S P L S F F A V - A D K - K T L L S F L P L H C L S . . . : . . . 9610 CCCTTGTCGGTAGTAACTGGAG : TGTTTGGGATGAATGTTGGAGGTGTTCCTTGGACCAAC P L S V V T G : V F G M N V G G V P W T N P C R - - L E : C L G - M L E V F L G P T S L V G S N W S : V W D E C W R C S L D Q . . . . . . 9457 CAAAGAGAACCTGAGTTGAAGGAAGGGTTCCGCAATGTTATGATGCTGTGTGTGGTTCTG Q R E P E L K E G F R N V M M L C V V L K E N L S - R K G S A M L - C C V W F C P K R T - V E G R V P Q C Y D A V C G S . . . . . . 9397 CTGCTGTTGGTTCTCCTCTGCTTCCTTTTTCCAGCACTTTATAGTCATTTAATGGCTTGG L L L V L L C F L F P A L Y S H L M A W C C W F S S A S F F Q H F I V I - W L G A A V G S P L L P F S S T L - S F N G L . . . . . . 9337 AAGAGAAGGCGAGACATGAAAAGAAACTGGTCTCTCAACCGGAGATCCTTCCTTAGAAGA K R R R D M K R N W S L N R R S F L R R R E G E T - K E T G L S T G D P S L E E E E K A R H E K K L V S Q P E I L P - K . . . . . . 9277 AGTACTGGCGTTAGGGAAAGAAATGAAAGGGGAGGTTACTTGAGACTATACTGAGATGAA S T G V R E R N E R G G Y L R L Y - D E V L A L G K E M K G E V T - D Y T E M K K Y W R - G K K - K G R L L E T I L R - . . . . . . 9217 AGTGGTAGGCAAATCTAAAAACTGCAGCTGTTTTCTGCTCCTTCCTTCATATCTTTCTCC S G R Q I - K L Q L F S A P S F I S F S V V G K S K N C S C F L L L P S Y L S P K W - A N L K T A A V F C S F L H I F L . . . . . . 9157 AACATGAATCAATTTTGGCATTAGTTCTGGCTTGGTAAGATTTCTCCTTTTCGCGAGATG N M N Q F W H - F W L G K I S P F R E M T - I N F G I S S G L V R F L L F A R C Q H E S I L A L V L A W - D F S F S R D . . . . . . 9097 CATGCACTTTGAAATGCGATGGATGTAACAGCAAAGTCTTCCTTTGTTTTACCAACTCTT H A L - N A M D V T A K S S F V L P T L M H F E M R W M - Q Q S L P L F Y Q L L A C T L K C D G C N S K V F L C F T N S . . . . 9037 GTGCTTGTATAGAGAATTCTTTTTGATCTTTTACTC V L V - R I L F D L L L C L Y R E F F L I F Y C A C I E N S F - S F T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-3_AGS-1_PPS_1 (9790 9589,9495 9224) (frame '1'; 471 bp, 157 residues) 1 FASDDINSLE ELIGRLRRLK ENVGFIANRV TAIQAGLDSW QSEQINKKLY YLSFLSIVFL 61 PLSVVTGVFG MNVGGVPWTN QREPELKEGF RNVMMLCVVL LLLVLLCFLF PALYSHLMAW 121 KRRRDMKRNW SLNRRSFLRR STGVRERNER GGYLRLY- PGL 4 (+ strand): 14728 30224 AGS-1 (14728 14771,15132 15140,16611 16657,16703 16716,18357 18615,18653 18705,19016 19087,19423 19443,20537 20563) SCR (e 0.705 d 0.000 a 0.000,e 0.889 d 0.995 a 0.000,e 0.681 d 0.000 a 0.000,e 0.571 d 0.970 a 0.000,e 0.763 d 0.000 a 0.849,e 0.632 d 0.905 a 0.000,e 0.653 d 0.000 a 0.000,e 0.857 d 0.000 a 0.000,e 0.704) Exon 1 14728 14771 ( 44 n); score: 0.705 Intron 1 14772 15131 ( 360 n); Pd: 0.000 Pa: 0.000 Exon 2 15132 15140 ( 9 n); score: 0.889 Intron 2 15141 16610 (1470 n); Pd: 0.995 Pa: 0.000 Exon 3 16611 16657 ( 47 n); score: 0.681 Intron 3 16658 16702 ( 45 n); Pd: 0.000 Pa: 0.000 Exon 4 16703 16716 ( 14 n); score: 0.571 Intron 4 16717 18356 (1640 n); Pd: 0.970 Pa: 0.000 Exon 5 18357 18615 ( 259 n); score: 0.763 Intron 5 18616 18652 ( 37 n); Pd: 0.000 Pa: 0.849 Exon 6 18653 18705 ( 53 n); score: 0.632 Intron 6 18706 19015 ( 310 n); Pd: 0.905 Pa: 0.000 Exon 7 19016 19087 ( 72 n); score: 0.653 Intron 7 19088 19422 ( 335 n); Pd: 0.000 Pa: 0.000 Exon 8 19423 19443 ( 21 n); score: 0.857 Intron 8 19444 20536 (1093 n); Pd: 0.000 Pa: 0.000 Exon 9 20537 20563 ( 27 n); score: 0.704 PGS (14728 14771,15132 15140,16611 16657,16703 16716,18357 18615,18653 18705,19016 19087,19423 19443,20537 20563) SGN-E539636+ PGS (14728 14771,15132 15140,16611 16657,16703 16716,18357 18615,18653 18705) SGN-E285125+ PGS (18357 18615,18653 18705,19016 19087,19423 19443,20537 20563) SGN-E539633- 3-phase translation of AGS-1 (+strand): . . . . . : . : 14728 TCACCTTCCTCAGAATGATTCATCATCAATAGAAAATCAAGAAC : CTCAACATG : TATTATA S P S S E - F I I N R K S R T : S T C : I I H L P Q N D S S S I E N Q E : P Q H : V L Y T F L R M I H H Q - K I K N : L N M : Y Y . . . . : . . : 16618 TATTTTTATATTTATATATAAATTTAAAAATAATTAATAA : ACATATTAAAATTG : TTCTAA Y F Y I Y I - I - K - L I : N I L K L : F - I F I F I Y K F K N N - - : T Y - N C : S K I F L Y L Y I N L K I I N K : H I K I : V L . . . . . . 18363 AATTCATGTTCTAAAATGAATGATATAAATTTATGTGTTTATTCATTCAAAGAATATAAA N S C S K M N D I N L C V Y S F K E Y K I H V L K - M I - I Y V F I H S K N I N K F M F - N E - Y K F M C L F I Q R I - . . . . . . 18423 TACTCCCTCCGTCCGAAATTGTTTGTCATGTTGTGCTTATAGAAAGTCAATTTAACTAAT Y S L R P K L F V M L C L - K V N L T N T P S V R N C L S C C A Y R K S I - L I I L P P S E I V C H V V L I E S Q F N - . . . . . . 18483 TTTCAAAGGTAAATTAGATCACATTAATTCGATATTTTAAACAAAAAAATTAGATATTCT F Q R - I R S H - F D I L N K K I R Y S F K G K L D H I N S I F - T K K L D I L F S K V N - I T L I R Y F K Q K N - I F . . . . . . 18543 AAAACTATATGGAAAATACTATAAATTACATTTTTTGCATATTAATATGATGAAAATAAT K T I W K I L - I T F F A Y - Y D E N N K L Y G K Y Y K L H F L H I N M M K I I - N Y M E N T I N Y I F C I L I - - K - . . : . . . . 18603 TCTATCTTAAAAT : AAACCATGACAAACAAAAATAGAAACTATGACAAACAAAACCGGACA S I L K : - T M T N K N R N Y D K Q N R T L S - N : K P - Q T K I E T M T N K T G Q F Y L K I : N H D K Q K - K L - Q T K P D . : . . . . . 18700 GAGAAA : CAATAAAATCATTCAACTAAATTTATCACTATAAAACTTAAAATTAACATGAAA E K : Q - N H S T K F I T I K L K I N M K R N : N K I I Q L N L S L - N L K L T - K R E : T I K S F N - I Y H Y K T - N - H E . . : . . : . . 19070 AAATAAATTCTTTTTAAT : ACATTTATTTTTTATTGTTTT : TAGATAACATTTGTTACGAAA K - I L F N : T F I F Y C F : - I T F V T K N K F F L I : H L F F I V F : R - H L L R N K I N S F - : Y I Y F L L F : L D N I C Y E . 20558 CATTAG H - I T L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (20695 21011,21949 22131,22242 22374,24313 24395) SCR (e 1.000 d 0.431 a 0.985,e 1.000 d 0.986 a 0.994,e 1.000 d 0.941 a 0.970,e 1.000) Exon 1 20695 21011 ( 317 n); score: 1.000 Intron 1 21012 21948 ( 937 n); Pd: 0.431 Pa: 0.985 Exon 2 21949 22131 ( 183 n); score: 1.000 Intron 2 22132 22241 ( 110 n); Pd: 0.986 Pa: 0.994 Exon 3 22242 22374 ( 133 n); score: 1.000 Intron 3 22375 24312 (1938 n); Pd: 0.941 Pa: 0.970 Exon 4 24313 24395 ( 83 n); score: 1.000 PGS (20695 21011,21949 22131,22242 22368) SGN-E346693+ PGS (20703 21011,21949 22131,22242 22374,24313 24395) SGN-E548564+ PGS (20712 21011,21949 22085) SGN-E296714+ 3-phase translation of AGS-2 (+strand): . . . . . . 20695 TCCAATTGCTGCCGCCGATCAAATGTGGAGCTATGGTTAATCTGCCAATGGACCAAATGC S N C C R R S N V E L W L I C Q W T K C P I A A A D Q M W S Y G - S A N G P N A Q L L P P I K C G A M V N L P M D Q M . . . . . . 20755 ATCACTTTCAAGCCTTACCTGCTCATATTCATGGAGATATGTCAGTGCTTCTGTTTCCTT I T F K P Y L L I F M E I C Q C F C F L S L S S L T C S Y S W R Y V S A S V S F H H F Q A L P A H I H G D M S V L L F P . . . . . . 20815 TTAGAAAATGCTGGCAGCAACAGAAACAAAACCATTTTCAGAGACCGGCATTGTCTTCTT L E N A G S N R N K T I F R D R H C L L - K M L A A T E T K P F S E T G I V F F F R K C W Q Q Q K Q N H F Q R P A L S S . . . . . . 20875 CTTCCTCGCCGGTCTCCGGCTGTCAGCCCAGAAGGTATTATTTGGGCAGATTCAAAAGAC L P R R S P A V S P E G I I W A D S K D F L A G L R L S A Q K V L F G Q I Q K T S S S P V S G C Q P R R Y Y L G R F K R . . . . . . 20935 GCTTCCGTTCTGAACCTAATCTAAAACCACTAACTTCCCGCATTGTTGATCTTACTCGCA A S V L N L I - N H - L P A L L I L L A L P F - T - S K T T N F P H C - S Y S Q R F R S E P N L K P L T S R I V D L T R . . : . . . . 20995 GAAGGCAACTCCACCAG : ATTTTTGTGGAAATTGAGATTGCAAAGAAGCGACATGGACAGT E G N S T R : F L W K L R L Q R S D M D S K A T P P : D F C G N - D C K E A T W T V R R Q L H Q : I F V E I E I A K K R H G Q . . . . . . 21992 TGAACACCATTGTTATGAATGCAGTGATGCAGGCTTGTGTTCATTGTGCTGATATAGAAT - T P L L - M Q - C R L V F I V L I - N E H H C Y E C S D A G L C S L C - Y R I L N T I V M N A V M Q A C V H C A D I E . . . . . . 22052 CTGCCTTGAGGCTCTTTGATGAAATGTCTGGCCCAGAGGGTTGTGGTGTTGATAATATCA L P - G S L M K C L A Q R V V V L I I S C L E A L - - N V W P R G L W C - - Y H S A L R L F D E M S G P E G C G V D N I . . : . . . . 22112 CTTACGCTACACTTTTAAAG : GGTTTGGGTGATGCCCGAAGAATTGATCAAGCATTTCAAT L T L H F - R : V W V M P E E L I K H F N L R Y T F K : G F G - C P K N - S S I S I T Y A T L L K : G L G D A R R I D Q A F Q . . . . . . 22282 TACTTGAGGCTGTTGAACAAGGTACTGCTGCTGGAAGTCCAAAACTTTCACCTCCCCTTG Y L R L L N K V L L L E V Q N F H L P L T - G C - T R Y C C W K S K T F T S P C L L E A V E Q G T A A G S P K L S P P L . . . . : . . 22342 TTAGAGGTCTGCTGAATTCTCTAATTGAAGCAG : GGGATCTACGCCGTGCTAATGGTCTTC L E V C - I L - L K Q : G I Y A V L M V F - R S A E F S N - S R : G S T P C - W S S V R G L L N S L I E A : G D L R R A N G L . . . . . . 24340 TTGCACGTTATGGTTTTGTATTTCACGAGGGCGGATATCCATCCATCTTGGTCTAC L H V M V L Y F T R A D I H P S W S C T L W F C I S R G R I S I H L G L L A R Y G F V F H E G G Y P S I L V Y Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-4_AGS-2_PPS_1 (20697 21011,21949 22131,22242 22374,24313 24395) (frame '0'; 714 bp, 238 residues) 1 QLLPPIKCGA MVNLPMDQMH HFQALPAHIH GDMSVLLFPF RKCWQQQKQN HFQRPALSSS 61 SSPVSGCQPR RYYLGRFKRR FRSEPNLKPL TSRIVDLTRR RQLHQIFVEI EIAKKRHGQL 121 NTIVMNAVMQ ACVHCADIES ALRLFDEMSG PEGCGVDNIT YATLLKGLGD ARRIDQAFQL 181 LEAVEQGTAA GSPKLSPPLV RGLLNSLIEA GDLRRANGLL ARYGFVFHEG GYPSILVY AGS-3 (24537 24688,24790 24858,25228 25363,28260 28492,30147 30224) SCR (e 1.000 d 0.000 a 1.000,e 1.000 d 0.948 a 0.999,e 1.000 d 0.970 a 0.979,e 1.000 d 0.994 a 0.991,e 0.987) Exon 1 24537 24688 ( 152 n); score: 1.000 Intron 1 24689 24789 ( 101 n); Pd: 0.000 Pa: 1.000 Exon 2 24790 24858 ( 69 n); score: 1.000 Intron 2 24859 25227 ( 369 n); Pd: 0.948 Pa: 0.999 Exon 3 25228 25363 ( 136 n); score: 1.000 Intron 3 25364 28259 (2896 n); Pd: 0.970 Pa: 0.979 Exon 4 28260 28492 ( 233 n); score: 1.000 Intron 4 28493 30146 (1654 n); Pd: 0.994 Pa: 0.991 Exon 5 30147 30224 ( 78 n); score: 0.987 PGS (24537 24688,24790 24858,25228 25363,28260 28492,30147 30224) SGN-E316129+ 3-phase translation of AGS-3 (+strand): . . . . . . 24537 ACACAGGTTGTCCTGAGGTAGCGCTACGTTTGCATGATGAAATACTAAGACATGGACTGA T Q V V L R - R Y V C M M K Y - D M D - H R L S - G S A T F A - - N T K T W T E T G C P E V A L R L H D E I L R H G L . . . . . . 24597 ACCTTGACAAGCTCACATATAATACACTAATCCTAGCATGTGTGGAGTCTGAAAAGTTGG T L T S S H I I H - S - H V W S L K S W P - Q A H I - Y T N P S M C G V - K V G N L D K L T Y N T L I L A C V E S E K L . . . . : . . 24657 ATGTTGCAATGCAGTTCTTTGAGGGCATGAAG : GACAGAGCACAAACTGCTGCTGATGATG M L Q C S S L R A - R : T E H K L L L M M C C N A V L - G H E : G Q S T N C C - - - D V A M Q F F E G M K : D R A Q T A A D D . . . . . : . 24818 ACATTTTACCAGATGTAGTTACCTACACTACGTTGCTGAAG : GGTTTTGGTCATGCCCAGG T F Y Q M - L P T L R C - R : V L V M P R H F T R C S Y L H Y V A E : G F W S C P G D I L P D V V T Y T T L L K : G F G H A Q . . . . . . 25247 ATCTCATTTCAGTTCAAAAGATTTTCATAGAAATGAAATTATCCAACAACTTGCATATTG I S F Q F K R F S - K - N Y P T T C I L S H F S S K D F H R N E I I Q Q L A Y - D L I S V Q K I F I E M K L S N N L H I . . . . . . : 25307 ATCGAGTTGCTTACACTGCAATCATTGATGCCTTCTTGAATTGTGGGACAATAAAAG : GCG I E L L T L Q S L M P S - I V G Q - K : A S S C L H C N H - C L L E L W D N K R : R D R V A Y T A I I D A F L N C G T I K : G . . . . . . 28263 CTCTGACTGTGTATGGGGAACTACTAAAGAAAGCTGGAGAAGATTCTAGCTTGAGGCCAA L - L C M G N Y - R K L E K I L A - G Q S D C V W G T T K E S W R R F - L E A K A L T V Y G E L L K K A G E D S S L R P . . . . . . 28323 AGCCTCATCTTTTCCTTGCTCTGATGCGTGCTTTTGCTGTTAGAGGAGAGTATGAAATGG S L I F S L L - C V L L L L E E S M K W A S S F P C S D A C F C C - R R V - N G K P H L F L A L M R A F A V R G E Y E M . . . . . . 28383 TTAAAATACTGCATGGACGCATGTGGCTAGATTCATCTGGAACAATCACCTCTAAAGTTA L K Y C M D A C G - I H L E Q S P L K L - N T A W T H V A R F I W N N H L - S - V K I L H G R M W L D S S G T I T S K V . . . . . : . 28443 ATGAAGAGGCTGATCATCTCCTAATGGAGGCAGCATTGAGCAATGGACAG : TTGGATTTGG M K R L I I S - W R Q H - A M D S : W I W - R G - S S P N G G S I E Q W T : V G F G N E E A D H L L M E A A L S N G Q : L D L . . . . . . 30157 CCCTACAATACATGAAAGGCAATGTTGAGAAATGGAAGCAAATACCATGGGCTAGTCGGG P Y N T - K A M L R N G S K Y H G L V G P T I H E R Q C - E M E A N T M G - S G A L Q Y M K G N V E K W K Q I P W A S R . 30217 GTGGAATG V E W N G G M Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-4_AGS-3_PPS_1 (24539 24688,24790 24858,25228 25363,28260 28492,30147 30224) (frame '0'; 666 bp, 222 residues) 1 TGCPEVALRL HDEILRHGLN LDKLTYNTLI LACVESEKLD VAMQFFEGMK DRAQTAADDD 61 ILPDVVTYTT LLKGFGHAQD LISVQKIFIE MKLSNNLHID RVAYTAIIDA FLNCGTIKGA 121 LTVYGELLKK AGEDSSLRPK PHLFLALMRA FAVRGEYEMV KILHGRMWLD SSGTITSKVN 181 EEADHLLMEA ALSNGQLDLA LQYMKGNVEK WKQIPWASRG GM PGL 5 (+ strand): 31340 34338 AGS-1 (31340 31363,32172 32204,32323 32499,33825 34338) SCR (e 1.000 d 0.965 a 0.000,e 1.000 d 0.976 a 0.999,e 1.000 d 0.995 a 0.992,e 0.992) Exon 1 31340 31363 ( 24 n); score: 1.000 Intron 1 31364 32171 ( 808 n); Pd: 0.965 Pa: 0.000 Exon 2 32172 32204 ( 33 n); score: 1.000 Intron 2 32205 32322 ( 118 n); Pd: 0.976 Pa: 0.999 Exon 3 32323 32499 ( 177 n); score: 1.000 Intron 3 32500 33824 (1325 n); Pd: 0.995 Pa: 0.992 Exon 4 33825 34338 ( 514 n); score: 0.992 PGS (31340 31363,32172 32204,32323 32499,33825 34338) SGN-E339946+ PGS (32356 32499,33825 34239) SGN-E541526- 3-phase translation of AGS-1 (+strand): . . . : . . . : 31340 TTTAGTCCTTGCATACTACCACAG : GGTCTATCAGAAACAACCTCTCTGCCTCAACAG : GTG F S P C I L P Q : G L S E T T S L P Q Q : V L V L A Y Y H R : V Y Q K Q P L C L N R : C - S L H T T T : G S I R N N L S A S T : G . . . . . . 32326 TCAGTACGCGATACTATTGAGCATATCATGGTTCCATTTACTGAAGCACAGCCTTTGCAA S V R D T I E H I M V P F T E A Q P L Q Q Y A I L L S I S W F H L L K H S L C K V S T R Y Y - A Y H G S I Y - S T A F A . . . . . . 32386 GCTACCCTGAAACTAAAGCAAGTGGTCATGCGTTTCTTCAGGGATTCGACTGTTCCAGTC A T L K L K Q V V M R F F R D S T V P V L P - N - S K W S C V S S G I R L F Q S S Y P E T K A S G H A F L Q G F D C S S . . . . . . : 32446 ATAGATGATTGGGGAAGTTGTGTTGGAATACTGCATTGTGAAGACTGCAATGAG : CTGGAT I D D W G S C V G I L H C E D C N E : L D - M I G E V V L E Y C I V K T A M S : W M H R - L G K L C W N T A L - R L Q - : A G . . . . . . 33831 GCGCCGCTTTCAGCCATGATGAGAAGTCCACCTCCTTCTGTGACAACCTCAACATCCATT A P L S A M M R S P P P S V T T S T S I R R F Q P - - E V H L L L - Q P Q H P L C A A F S H D E K S T S F C D N L N I H . . . . . . 33891 GGTCGTGTTATTGATCTAATGCTAGAGAAGAAGTACAAAATGGTTATTGTTGCAAAATAC G R V I D L M L E K K Y K M V I V A K Y V V L L I - C - R R S T K W L L L Q N T W S C Y - S N A R E E V Q N G Y C C K I . . . . . . 33951 GAAAATGTGCGCGGGATGTTTTACAGCTCCAGTGTAAGGGCTGTCGGAGTTTTTACGTCT E N V R G M F Y S S S V R A V G V F T S K M C A G C F T A P V - G L S E F L R L R K C A R D V L Q L Q C K G C R S F Y V . . . . . . 34011 GAACAGCTATATAAGCTTGCTCCAACTTCATCAGAGCTAAGTCTTCAATATTCTTCTGCC E Q L Y K L A P T S S E L S L Q Y S S A N S Y I S L L Q L H Q S - V F N I L L P - T A I - A C S N F I R A K S S I F F C . . . . . . 34071 TGTAGAGAACATATTGAAATTTGTAGGTAGTATACCTCGAGAAAGAAGTTTGCTTGAACT C R E H I E I C R - Y T S R K K F A - T V E N I L K F V G S I P R E R S L L E L L - R T Y - N L - V V Y L E K E V C L N . . . . . . 34131 TGCTCTTTTTCCACTGTAGAGTAGGCTATCATTTCTTTTGGGCTGCTGAGTTTTTCGTGT C S F S T V E - A I I S F G L L S F S C A L F P L - S R L S F L L G C - V F R V L L F F H C R V G Y H F F W A A E F F V . . . . . . 34191 GTCACTTATTGCGTGCTAGATTGCAATACTATTGACTTTGAATGGTTTGACTATCTGTTC V T Y C V L D C N T I D F E W F D Y L F S L I A C - I A I L L T L N G L T I C S C H L L R A R L Q Y Y - L - M V - L S V . . . . . . 34251 AACTTTATATAATGTTGGTGCTGGGCCTGACAAAAATATTCACAGTATATGGAAATTTTG N F I - C W C W A - Q K Y S Q Y M E I L T L Y N V G A G P D K N I H S I W K F W Q L Y I M L V L G L T K I F T V Y G N F . . . 34311 GAGTTGTTGAGACAACTAAAAAACTAAA E L L R Q L K N - S C - D N - K T K G V V E T T K K L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-5_AGS-1_PPS_1 (31340 31363,32172 32204,32323 32499,33825 34100) (frame '1'; 507 bp, 169 residues) 1 FSPCILPQGL SETTSLPQQV SVRDTIEHIM VPFTEAQPLQ ATLKLKQVVM RFFRDSTVPV 61 IDDWGSCVGI LHCEDCNELD APLSAMMRSP PPSVTTSTSI GRVIDLMLEK KYKMVIVAKY 121 ENVRGMFYSS SVRAVGVFTS EQLYKLAPTS SELSLQYSSA CREHIEICR- PGL 6 (- strand): 36507 35994 AGS-1 (36507 35994) SCR (e 0.996) Exon 1 36507 35994 ( 514 n); score: 0.996 PGS (36507 35994) SGN-E330401+ 3-phase translation of AGS-1 (-strand): . . . . . . 36507 AAGAGCAAGAGAGCCAGCTCCTGCAGGGAAGGAGAAGAGAGGAACATCACCAATACATCA K S K R A S S C R E G E E R N I T N T S R A R E P A P A G K E K R G T S P I H H E Q E S Q L L Q G R R R E E H H Q Y I . . . . . . 36447 CCAAAGAAGCACAACAAACACATCAAAAACAACATCAACTGTTAGAAAACAAACTGATCC P K K H N K H I K N N I N C - K T N - S Q R S T T N T S K T T S T V R K Q T D P T K E A Q Q T H Q K Q H Q L L E N K L I . . . . . . 36387 AACATTAACCACTAGTTCCTTAAACAAGAATGTTCCTAGCTACCTCAAACCAACAATTAC N I N H - F L K Q E C S - L P Q T N N Y T L T T S S L N K N V P S Y L K P T I T Q H - P L V P - T R M F L A T S N Q Q L . . . . . . 36327 TCAAGCTAAGAAGTCTGCATCTTCAGGTGACCTGCACAACACTCACAGTACCAAAACTTC S S - E V C I F R - P A Q H S Q Y Q N F Q A K K S A S S G D L H N T H S T K T S L K L R S L H L Q V T C T T L T V P K L . . . . . . 36267 TAATCTAGCTCGAAGGAGATCATTCGATAATAACCCTCCCCTGCATTCTTCCTCACCAAA - S S S K E I I R - - P S P A F F L T K N L A R R R S F D N N P P L H S S S P K L I - L E G D H S I I T L P C I L P H Q . . . . . . 36207 AACCCGAATTTCCCCTAGTCCTAAGGAGAGAATTCCTCGTTCATCGTCTTCTTTATCAAC N P N F P - S - G E N S S F I V F F I N T R I S P S P K E R I P R S S S S L S T K P E F P L V L R R E F L V H R L L Y Q . . . . . . 36147 CAAGACTTCCACTTCCCAGAAACCCCTTTTGGATAGATTATCAAAAACTACGACTAGTAA Q D F H F P E T P F G - I I K N Y D - - K T S T S Q K P L L D R L S K T T T S K P R L P L P R N P F W I D Y Q K L R L V . . . . . . 36087 GGATGCCATTGGCAAACAACGCAGTGCTGGCCTAAATTCTAGGCCAGTGACCAAAAGAAA G C H W Q T T Q C W P K F - A S D Q K K D A I G K Q R S A G L N S R P V T K R K R M P L A N N A V L A - I L G Q - P K E . . . . 36027 GACGACCACAACCACAACCAGGAAGCATGATAGT D D H N H N Q E A - - T T T T T T R K H D S R R P Q P Q P G S M I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-6_AGS-1_PPS_1 (36506 35994) (frame '2'; 513 bp, 171 residues) 1 RAREPAPAGK EKRGTSPIHH QRSTTNTSKT TSTVRKQTDP TLTTSSLNKN VPSYLKPTIT 61 QAKKSASSGD LHNTHSTKTS NLARRRSFDN NPPLHSSSPK TRISPSPKER IPRSSSSLST 121 KTSTSQKPLL DRLSKTTTSK DAIGKQRSAG LNSRPVTKRK TTTTTTRKHD S 3-phase translation of AGS-1 (+strand): . . . . . . 35994 ACTATCATGCTTCCTGGTTGTGGTTGTGGTCGTCTTTCTTTTGGTCACTGGCCTAGAATT T I M L P G C G C G R L S F G H W P R I L S C F L V V V V V V F L L V T G L E F Y H A S W L W L W S S F F W S L A - N . . . . . . 36054 TAGGCCAGCACTGCGTTGTTTGCCAATGGCATCCTTACTAGTCGTAGTTTTTGATAATCT - A S T A L F A N G I L T S R S F - - S R P A L R C L P M A S L L V V V F D N L L G Q H C V V C Q W H P Y - S - F L I I . . . . . . 36114 ATCCAAAAGGGGTTTCTGGGAAGTGGAAGTCTTGGTTGATAAAGAAGACGATGAACGAGG I Q K G F L G S G S L G - - R R R - T R S K R G F W E V E V L V D K E D D E R G Y P K G V S G K W K S W L I K K T M N E . . . . . . 36174 AATTCTCTCCTTAGGACTAGGGGAAATTCGGGTTTTTGGTGAGGAAGAATGCAGGGGAGG N S L L R T R G N S G F W - G R M Q G R I L S L G L G E I R V F G E E E C R G G E F S P - D - G K F G F L V R K N A G E . . . . . . 36234 GTTATTATCGAATGATCTCCTTCGAGCTAGATTAGAAGTTTTGGTACTGTGAGTGTTGTG V I I E - S P S S - I R S F G T V S V V L L S N D L L R A R L E V L V L - V L C G Y Y R M I S F E L D - K F W Y C E C C . . . . . . 36294 CAGGTCACCTGAAGATGCAGACTTCTTAGCTTGAGTAATTGTTGGTTTGAGGTAGCTAGG Q V T - R C R L L S L S N C W F E V A R R S P E D A D F L A - V I V G L R - L G A G H L K M Q T S - L E - L L V - G S - . . . . . . 36354 AACATTCTTGTTTAAGGAACTAGTGGTTAATGTTGGATCAGTTTGTTTTCTAACAGTTGA N I L V - G T S G - C W I S L F S N S - T F L F K E L V V N V G S V C F L T V D E H S C L R N - W L M L D Q F V F - Q L . . . . . . 36414 TGTTGTTTTTGATGTGTTTGTTGTGCTTCTTTGGTGATGTATTGGTGATGTTCCTCTCTT C C F - C V C C A S L V M Y W - C S S L V V F D V F V V L L W - C I G D V P L F M L F L M C L L C F F G D V L V M F L S . . . . 36474 CTCCTTCCCTGCAGGAGCTGGCTCTCTTGCTCTT L L P C R S W L S C S S F P A G A G S L A L S P S L Q E L A L L L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-6_AGS-1_PPS_1 (35995 36285) (frame '2'; 288 bp, 96 residues) 1 LSCFLVVVVV VFLLVTGLEF RPALRCLPMA SLLVVVFDNL SKRGFWEVEV LVDKEDDERG 61 ILSLGLGEIR VFGEEECRGG LLSNDLLRAR LEVLVL- PGL 7 (- strand): 38157 37964 AGS-1 (38041 37964) SCR (e 1.000) Exon 1 38041 37964 ( 78 n); score: 1.000 PGS (38041 37964) SGN-E577713- 3-phase translation of AGS-1 (-strand): . . . . . . 38041 TATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGATTACTACGCCCTTCCTCGTCTCTG Y A Y F Q L P E A F R R L L R P S S S L M L I F N S P K H F V D Y Y A L P R L W C L F S T P R S I S S I T T P F L V S . . 37981 GGTGCCTAGGTATCCACC G A - V S T V P R Y P G C L G I H Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 37964 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG G G Y L G T Q R R G R A - - S T K C F G V D T - A P R D E E G R S N R R N A S G W I P R H P E T R K G V V I D E M L R . . 38024 GAGTTGAAAATAAGCATA E L K I S I S - K - A G V E N K H Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (38157 38043) SCR (e 0.982) Exon 1 38157 38043 ( 115 n); score: 0.982 PGS (38157 38043) SGN-E549799- PGS (38155 38043) SGN-E239658- PGS (38123 38043) SGN-E578234- 3-phase translation of AGS-2 (-strand): . . . . . . 38157 CAATCACTCTACGTAATTTATTAAACCGGTTTATGCTTGTAGCTACCCTCGGGGGGAATA Q S L Y V I Y - T G L C L - L P S G G I N H S T - F I K P V Y A C S Y P R G E Y I T L R N L L N R F M L V A T L G G N . . . . . . 38097 CGTGTAATAGCCCCGCGGGGAACCCCCGCCCGGAGGCGGAAATCTCTTTTAATTT R V I A P R G T P A R R R K S L L I V - - P R G E P P P G G G N L F - F T C N S P A G N P R P E A E I S F N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 38043 AAATTAAAAGAGATTTCCGCCTCCGGGCGGGGGTTCCCCGCGGGGCTATTACACGTATTC K L K E I S A S G R G F P A G L L H V F N - K R F P P P G G G S P R G Y Y T Y S I K R D F R L R A G V P R G A I T R I . . . . . . 38103 CCCCCGAGGGTAGCTACAAGCATAAACCGGTTTAATAAATTACGTAGAGTGATTG P P R V A T S I N R F N K L R R V I P R G - L Q A - T G L I N Y V E - L P P E G S Y K H K P V - - I T - S D Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 41992 40773 AGS-1 (41374 40773) SCR (e 0.735) Exon 1 41374 40773 ( 602 n); score: 0.735 PGS (41373 40773) SGN-E371396- PGS (41373 40773) SGN-E543846- PGS (41291 40773) SGN-E542258- PGS (41328 41044) SGN-E250289+ PGS (41362 41073) SGN-E213783+ PGS (41373 41095) SGN-E371397+ PGS (41374 41165) SGN-E297757+ 3-phase translation of AGS-1 (-strand): . . . . . . 41374 ATGTGTTAGACCCGTAAACTATTTGATCTAACTACGTGCAGACATGTCAAGATCTTAGGC M C - T R K L F D L T T C R H V K I L G C V R P V N Y L I - L R A D M S R S - A V L D P - T I - S N Y V Q T C Q D L R . . . . . . 41314 ATTGGTCTTGACATGGATGAGGGCAAAACAGTGCAACACAAGTTCAAGATGCTTGAGTGT I G L D M D E G K T V Q H K F K M L E C L V L T W M R A K Q C N T S S R C L S V H W S - H G - G Q N S A T Q V Q D A - V . . . . . . 41254 TGGCAAGGCAGCTTGAATGTGCAAGGCTTACGTGCGGGCTAGAGTCATTGGCAAGACAGC W Q G S L N V Q G L R A G - S H W Q D S G K A A - M C K A Y V R A R V I G K T A L A R Q L E C A R L T C G L E S L A R Q . . . . . . 41194 GTGTTGGCTTGACAAGGCAAAGCTGTGAAGACTTGATAATGGCAAGAACAAAGGCAGTTC V L A - Q G K A V K T - - W Q E Q R Q F C W L D K A K L - R L D N G K N K G S S R V G L T R Q S C E D L I M A R T K A V . . . . . . 41134 GCGTGAATTGCTGAAATAAAACTAAGTGTTGGAGGACAGCTAAAATATTCTAAGTGTTGG A - I A E I K L S V G G Q L K Y S K C W R E L L K - N - V L E D S - N I L S V G R V N C - N K T K C W R T A K I F - V L . . . . . . 41074 AAGCTGACTGAAATATTCTAAGTGTTAGAATATTAGTATTTCGTGTAGATAAGAATGTAA K L T E I F - V L E Y - Y F V - I R M - S - L K Y S K C - N I S I S C R - E C N E A D - N I L S V R I L V F R V D K N V . . . . . . 41014 TTTGAATTAGATTTTATCTGTTAGAAATATAGCTGTTGGAAACTTAGTTTGAACCCTGTG F E L D F I C - K Y S C W K L S L N P V L N - I L S V R N I A V G N L V - T L - I - I R F Y L L E I - L L E T - F E P C . . . . . . 40954 ATGACAAGTGTCGGACATGTGTCATTTGTAACTGCCGCATGTAACTGCCATGTGCAGAAA M T S V G H V S F V T A A C N C H V Q K - Q V S D M C H L - L P H V T A M C R N D D K C R T C V I C N C R M - L P C A E . . . . . . 40894 TTTTATTAAGGGTGAAAATTCGTCTAAGGTTGGGAGAGTGTTTTCTAGCCATAGACAAAT F Y - G - K F V - G W E S V F - P - T N F I K G E N S S K V G R V F S S H R Q I I L L R V K I R L R L G E C F L A I D K . . . . . . 40834 TCGTGAAGCTTTCCTTTATATTAATTATCAGATTAATAAAGGTTGGGACGAGTTCCTGTA S - S F P L Y - L S D - - R L G R V P V R E A F L Y I N Y Q I N K G W D E F L - F V K L S F I L I I R L I K V G T S S C . 40774 AA K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 40773 TTTACAGGAACTCGTCCCAACCTTTATTAATCTGATAATTAATATAAAGGAAAGCTTCAC F T G T R P N L Y - S D N - Y K G K L H L Q E L V P T F I N L I I N I K E S F T Y R N S S Q P L L I - - L I - R K A S . . . . . . 40833 GAATTTGTCTATGGCTAGAAAACACTCTCCCAACCTTAGACGAATTTTCACCCTTAATAA E F V Y G - K T L S Q P - T N F H P - - N L S M A R K H S P N L R R I F T L N K R I C L W L E N T L P T L D E F S P L I . . . . . . 40893 AATTTCTGCACATGGCAGTTACATGCGGCAGTTACAAATGACACATGTCCGACACTTGTC N F C T W Q L H A A V T N D T C P T L V I S A H G S Y M R Q L Q M T H V R H L S K F L H M A V T C G S Y K - H M S D T C . . . . . . 40953 ATCACAGGGTTCAAACTAAGTTTCCAACAGCTATATTTCTAACAGATAAAATCTAATTCA I T G F K L S F Q Q L Y F - Q I K S N S S Q G S N - V S N S Y I S N R - N L I Q H H R V Q T K F P T A I F L T D K I - F . . . . . . 41013 AATTACATTCTTATCTACACGAAATACTAATATTCTAACACTTAGAATATTTCAGTCAGC N Y I L I Y T K Y - Y S N T - N I S V S I T F L S T R N T N I L T L R I F Q S A K L H S Y L H E I L I F - H L E Y F S Q . . . . . . 41073 TTCCAACACTTAGAATATTTTAGCTGTCCTCCAACACTTAGTTTTATTTCAGCAATTCAC F Q H L E Y F S C P P T L S F I S A I H S N T - N I L A V L Q H L V L F Q Q F T L P T L R I F - L S S N T - F Y F S N S . . . . . . 41133 GCGAACTGCCTTTGTTCTTGCCATTATCAAGTCTTCACAGCTTTGCCTTGTCAAGCCAAC A N C L C S C H Y Q V F T A L P C Q A N R T A F V L A I I K S S Q L C L V K P T R E L P L F L P L S S L H S F A L S S Q . . . . . . 41193 ACGCTGTCTTGCCAATGACTCTAGCCCGCACGTAAGCCTTGCACATTCAAGCTGCCTTGC T L S C Q - L - P A R K P C T F K L P C R C L A N D S S P H V S L A H S S C L A H A V L P M T L A R T - A L H I Q A A L . . . . . . 41253 CAACACTCAAGCATCTTGAACTTGTGTTGCACTGTTTTGCCCTCATCCATGTCAAGACCA Q H S S I L N L C C T V L P S S M S R P N T Q A S - T C V A L F C P H P C Q D Q P T L K H L E L V L H C F A L I H V K T . . . . . . 41313 ATGCCTAAGATCTTGACATGTCTGCACGTAGTTAGATCAAATAGTTTACGGGTCTAACAC M P K I L T C L H V V R S N S L R V - H C L R S - H V C T - L D Q I V Y G S N T N A - D L D M S A R S - I K - F T G L T . 41373 AT H Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-8_AGS-1_PPS_1 (40774 40971) (frame '2'; 195 bp, 65 residues) 1 LQELVPTFIN LIINIKESFT NLSMARKHSP NLRRIFTLNK ISAHGSYMRQ LQMTHVRHLS 61 SQGSN- AGS-2 (41374 41035,40897 40874) SCR (e 0.885 d 0.000 a 0.509,e 0.708) Exon 1 41374 41035 ( 340 n); score: 0.885 Intron 1 41034 40898 ( 137 n); Pd: 0.000 Pa: 0.509 Exon 2 40897 40874 ( 24 n); score: 0.708 PGS (41374 41035,40897 40874) SGN-E542260+ 3-phase translation of AGS-2 (-strand): . . . . . . 41374 ATGTGTTAGACCCGTAAACTATTTGATCTAACTACGTGCAGACATGTCAAGATCTTAGGC M C - T R K L F D L T T C R H V K I L G C V R P V N Y L I - L R A D M S R S - A V L D P - T I - S N Y V Q T C Q D L R . . . . . . 41314 ATTGGTCTTGACATGGATGAGGGCAAAACAGTGCAACACAAGTTCAAGATGCTTGAGTGT I G L D M D E G K T V Q H K F K M L E C L V L T W M R A K Q C N T S S R C L S V H W S - H G - G Q N S A T Q V Q D A - V . . . . . . 41254 TGGCAAGGCAGCTTGAATGTGCAAGGCTTACGTGCGGGCTAGAGTCATTGGCAAGACAGC W Q G S L N V Q G L R A G - S H W Q D S G K A A - M C K A Y V R A R V I G K T A L A R Q L E C A R L T C G L E S L A R Q . . . . . . 41194 GTGTTGGCTTGACAAGGCAAAGCTGTGAAGACTTGATAATGGCAAGAACAAAGGCAGTTC V L A - Q G K A V K T - - W Q E Q R Q F C W L D K A K L - R L D N G K N K G S S R V G L T R Q S C E D L I M A R T K A V . . . . . . 41134 GCGTGAATTGCTGAAATAAAACTAAGTGTTGGAGGACAGCTAAAATATTCTAAGTGTTGG A - I A E I K L S V G G Q L K Y S K C W R E L L K - N - V L E D S - N I L S V G R V N C - N K T K C W R T A K I F - V L . . . . : . . 41074 AAGCTGACTGAAATATTCTAAGTGTTAGAATATTAGTATT : AAATTTTATTAAGGGTGAAA K L T E I F - V L E Y - Y : - I L L R V K S - L K Y S K C - N I S I : K F Y - G - K E A D - N I L S V R I L V L : N F I K G E . 40877 ATTC I F N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (41904 41461) SCR (e 0.846) Exon 1 41904 41461 ( 444 n); score: 0.846 PGS (41904 41461) SGN-E243215+ PGS (41790 41478) SGN-E578389- 3-phase translation of AGS-3 (-strand): . . . . . . 41904 TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAA L L - M T K F F L R I R N - I T I H T K Y Y R - P N F F F E Y E I K L Q Y T Q K I I D D Q I F S S N T K L N Y N T H K . . . . . . 41844 AAAATAGTTTAAATTTTTTTTTAAAACTAAGGAATGAAAGAAAAAACAAGAAACTCAAAT K I V - I F F - N - G M K E K T R N S N K - F K F F F K T K E - K K K Q E T Q I K N S L N F F L K L R N E R K N K K L K . . . . . . 41784 AATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTA N Y N K R S Q K I I Y V - K K L K Y T L I I I K E V K K - F M Y E K N - N I P - - L - - K K S K N N L C M K K I K I Y L . . . . . . 41724 AACTTTGATAAAAGAATCATATATACCCCTAAATAATTTTTTTAAAAAAAATTAGAAGTA N F D K R I I Y T P K - F F - K K L E V T L I K E S Y I P L N N F F K K N - K - K L - - K N H I Y P - I I F L K K I R S . . . . . . 41664 ACAAATATAAATTTAAAACTAATTTTTTAATTTCCGTTAAATAAAGGGTATATGTGAGCC T N I N L K L I F - F P L N K G Y M - A Q I - I - N - F F N F R - I K G I C E P N K Y K F K T N F L I S V K - R V Y V S . . . . . . 41604 ATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGC I L - R Q G Y M - A V C I T V R A Y M S F C N G R G I C E P F V - R - G H I - A H F V T A G V Y V S R L Y N G K G I Y E . . . . . . 41544 CATTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGTATATCAGACCC H F Y N E G Y I S S K - Q S - G Y I R P I F I T R G I S A L N D K V E G I S D P P F L - R G V Y Q L - M T K L R V Y Q T . . . 41484 TTTTCCCTTCTTCTTTTTTTGACA F S L L L F L T F P F F F F - L F P S S F F D Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 41461 TGTCAAAAAAAGAAGAAGGGAAAAGGGTCTGATATACCCTCAACTTTGTCATTTAGAGCT C Q K K K K G K G S D I P S T L S F R A V K K R R R E K G L I Y P Q L C H L E L S K K E E G K R V - Y T L N F V I - S . . . . . . 41521 GATATACCCCTCGTTATAAAAATGGCTCATATATGCCCTTACCGTTATACAAACGGCTCA D I P L V I K M A H I C P Y R Y T N G S I Y P S L - K W L I Y A L T V I Q T A H - Y T P R Y K N G S Y M P L P L Y K R L . . . . . . 41581 CATATACCCCTGCCGTTACAAAATGGCTCACATATACCCTTTATTTAACGGAAATTAAAA H I P L P L Q N G S H I P F I - R K L K I Y P C R Y K M A H I Y P L F N G N - K T Y T P A V T K W L T Y T L Y L T E I K . . . . . . 41641 AATTAGTTTTAAATTTATATTTGTTACTTCTAATTTTTTTTAAAAAAATTATTTAGGGGT N - F - I Y I C Y F - F F L K K L F R G I S F K F I F V T S N F F - K N Y L G V K L V L N L Y L L L L I F F K K I I - G . . . . . . 41701 ATATATGATTCTTTTATCAAAGTTTAAGGTATATTTTAATTTTTTTCATACATAAATTAT I Y D S F I K V - G I F - F F S Y I N Y Y M I L L S K F K V Y F N F F H T - I I Y I - F F Y Q S L R Y I L I F F I H K L . . . . . . 41761 TTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTGTTTTTTCTTTCATTCCTTAGTT F L T S F I I I I - V S C F F F H S L V F - L L L L - L F E F L V F S F I P - F F F D F F Y Y N Y L S F L F F L S F L S . . . . . . 41821 TTAAAAAAAAATTTAAACTATTTTTTTTGTGTGTATTGTAATTTAATTTCGTATTCGAAG L K K N L N Y F F C V Y C N L I S Y S K - K K I - T I F F V C I V I - F R I R R F K K K F K L F F L C V L - F N F V F E . . . 41881 AAAAAATTTGGTCATCTATAATAA K K F G H L - - K N L V I Y N E K I W S S I I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (41992 41636,41589 41563,41525 41498) SCR (e 0.835 d 0.000 a 0.974,e 0.704 d 0.000 a 0.000,e 0.714) Exon 1 41992 41636 ( 357 n); score: 0.835 Intron 1 41635 41590 ( 46 n); Pd: 0.000 Pa: 0.974 Exon 2 41589 41563 ( 27 n); score: 0.704 Intron 2 41562 41526 ( 37 n); Pd: 0.000 Pa: 0.000 Exon 3 41525 41498 ( 28 n); score: 0.714 PGS (41992 41636,41589 41563,41525 41498) SGN-E542827+ 3-phase translation of AGS-4 (-strand): . . . . . . 41992 TTTTGACTTTTTTTGTTTTAATGACTAATTTATAACTATTATTTTGATAATCAAATTTAT F - L F L F - - L I Y N Y Y F D N Q I Y F D F F C F N D - F I T I I L I I K F I L T F F V L M T N L - L L F - - S N L . . . . . . 41932 TTATGTTTCACTAATATTCTTGTAAAACTTATTATAGATGACCAAATTTTTTCTTCGAAT L C F T N I L V K L I I D D Q I F S S N Y V S L I F L - N L L - M T K F F L R I F M F H - Y S C K T Y Y R - P N F F F E . . . . . . 41872 ACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTTAAAACTAAGG T K L N Y N T H K K N S L N F F L K L R R N - I T I H T K K I V - I F F - N - G Y E I K L Q Y T Q K K - F K F F F K T K . . . . . . 41812 AATGAAAGAAAAAACAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTA N E R K N K K L K - L - - K K S K N N L M K E K T R N S N N Y N K R S Q K I I Y E - K K K Q E T Q I I I I K E V K K - F . . . . . . 41752 TGTATGAAAAAAATTAAAATATACCTTAAACTTTGATAAAAGAATCATATATACCCCTAA C M K K I K I Y L K L - - K N H I Y P - V - K K L K Y T L N F D K R I I Y T P K M Y E K N - N I P - T L I K E S Y I P L . . . . . . : 41692 ATAATTTTTTTAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTA : GGG I I F L K K I R S N K Y K F K T N F L : G - F F - K K L E V T N I N L K L I F - : G N N F F K K N - K - Q I - I - N - F F : R . . . : . . . 41586 TATATGTGAGCCGTTTGTATAACG : ATATCAGCTCTAAATGACAAAGTTGAGG Y M - A V C I T : I S A L N D K V E I C E P F V - R : Y Q L - M T K L R V Y V S R L Y N : D I S S K - Q S - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (+ strand): 42439 53336 AGS-1 (42439 42479,43241 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 53336) SCR (e 1.000 d 0.998 a 0.974,e 1.000 d 0.998 a 0.998,e 1.000 d 0.978 a 0.979,e 1.000 d 0.872 a 0.993,e 1.000 d 0.974 a 0.992,e 1.000 d 0.910 a 0.954,e 1.000 d 0.957 a 0.984,e 1.000 d 0.995 a 1.000,e 1.000 d 0.981 a 0.998,e 1.000 d 0.960 a 0.998,e 1.000 d 0.977 a 0.986,e 1.000 d 0.999 a 0.996,e 1.000) Exon 1 42439 42479 ( 41 n); score: 1.000 Intron 1 42480 43240 ( 761 n); Pd: 0.998 Pa: 0.974 Exon 2 43241 43566 ( 326 n); score: 1.000 Intron 2 43567 44682 (1116 n); Pd: 0.998 Pa: 0.998 Exon 3 44683 44794 ( 112 n); score: 1.000 Intron 3 44795 44866 ( 72 n); Pd: 0.978 Pa: 0.979 Exon 4 44867 44940 ( 74 n); score: 1.000 Intron 4 44941 47055 (2115 n); Pd: 0.872 Pa: 0.993 Exon 5 47056 47124 ( 69 n); score: 1.000 Intron 5 47125 47206 ( 82 n); Pd: 0.974 Pa: 0.992 Exon 6 47207 47290 ( 84 n); score: 1.000 Intron 6 47291 47390 ( 100 n); Pd: 0.910 Pa: 0.954 Exon 7 47391 47460 ( 70 n); score: 1.000 Intron 7 47461 49302 (1842 n); Pd: 0.957 Pa: 0.984 Exon 8 49303 49358 ( 56 n); score: 1.000 Intron 8 49359 50705 (1347 n); Pd: 0.995 Pa: 1.000 Exon 9 50706 50827 ( 122 n); score: 1.000 Intron 9 50828 51269 ( 442 n); Pd: 0.981 Pa: 0.998 Exon 10 51270 51341 ( 72 n); score: 1.000 Intron 10 51342 51436 ( 95 n); Pd: 0.960 Pa: 0.998 Exon 11 51437 51518 ( 82 n); score: 1.000 Intron 11 51519 51609 ( 91 n); Pd: 0.977 Pa: 0.986 Exon 12 51610 51687 ( 78 n); score: 1.000 Intron 12 51688 52758 (1071 n); Pd: 0.999 Pa: 0.996 Exon 13 52759 53336 ( 578 n); score: 1.000 PGS (42439 42479,43241 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47446) SGN-E332734+ PGS (42441 42479,43241 43566,44683 44794,44867 44940,47056 47100) SGN-E346861+ PGS (42444 42479,43241 43566,44683 44794,44867 44940,47056 47096) SGN-E321051+ PGS (42445 42479,43241 43566,44683 44794,44867 44885) SGN-E320655+ PGS (42448 42479,43241 43566,44683 44794,44867 44940,47056 47095) SGN-E326104+ PGS (42448 42479,43241 43491) SGN-E327418+ PGS (43261 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49355) SGN-E327022+ PGS (43261 43566,44683 44794,44867 44940,47056 47124,47207 47228) SGN-E328450+ PGS (43266 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47451) SGN-E342358+ PGS (43449 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49346) SGN-E211391+ PGS (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51293) SGN-E253626+ PGS (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50759) SGN-E259625+ PGS (43504 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49355) SGN-E257224+ PGS (44698 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50754) SGN-E284052+ PGS (44704 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51514) SGN-E260499+ PGS (44770 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51459) SGN-E333768+ PGS (49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 52891) SGN-E313185+ PGS (49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 52888) SGN-E262555+ PGS (51270 51341,51437 51518,51610 51687,52759 53137) SGN-E319053+ PGS (51627 51687,52759 53224) SGN-E345493+ PGS (52918 53336) SGN-E537873- PGS (52918 53336) SGN-E265409- 3-phase translation of AGS-1 (+strand): . . . . . : . 42439 TCATCTTCAGATAAGATTATTCAACTCTCCTTCCTTCAAAG : TGCTGCTTATCTGAGCAAT S S S D K I I Q L S F L Q S : A A Y L S N H L Q I R L F N S P S F K : V L L I - A I I F R - D Y S T L L P S K : C C L S E Q . . . . . . 43260 CATGGCTTCTGCGGCAATGTTGAATGCACCTTGTAATATTGGAGCTGTAAAGTTTGAGGT H G F C G N V E C T L - Y W S C K V - G M A S A A M L N A P C N I G A V K F E V S W L L R Q C - M H L V I L E L - S L R . . . . . . 43320 GAAACTGAAGCCATCGCCAAATTTGTTTTGTGCACGGCCTTCTGTTAAGTTGAATCAAAG E T E A I A K F V L C T A F C - V E S K K L K P S P N L F C A R P S V K L N Q R - N - S H R Q I C F V H G L L L S - I K . . . . . . 43380 GAGGGTGTTAACCATTAGAGCTAGCAAGGAAGGGCATGATAATGGGTCTAGCTCAGGGCC E G V N H - S - Q G R A - - W V - L R A R V L T I R A S K E G H D N G S S S G P G G C - P L E L A R K G M I M G L A Q G . . . . . . 43440 CTTGAGAAAGATGGGGTTGACTGATGAGGAGTGTGAGGCTGCTGTAGTTGCCGGAAATGT L E K D G V D - - G V - G C C S C R K C L R K M G L T D E E C E A A V V A G N V P - E R W G - L M R S V R L L - L P E M . . . . . . 43500 ACCTGAAGCTCCTCCGGTTCCACCAAAGCCGGCTGCACCTGACGGTACCCCTATTGTGTC T - S S S G S T K A G C T - R Y P Y C V P E A P P V P P K P A A P D G T P I V S Y L K L L R F H Q S R L H L T V P L L C . : . . . . . 43560 TTCACTG : CCAATTAATAGGAGACCACGCCGTAATCGTAGGTCGTCAGCAGCAAGAGCTGC F T : A N - - E T T P - S - V V S S K S C S L : P I N R R P R R N R R S S A A R A A L H C : Q L I G D H A V I V G R Q Q Q E L . . . . . . : 44736 ATTCCAGGAAACAAATATAAGCCCTGCAAATCTTGTATATCCACTATTTATTCATGAGG : G I P G N K Y K P C K S C I S T I Y S - G : F Q E T N I S P A N L V Y P L F I H E : G H S R K Q I - A L Q I L Y I H Y L F M R : . . . . . . 44868 TGAAGAGGACACACCTATTGGAGCAATGCCTGGATGTTATAGGCTTGGATGGAGGCATGG - R G H T Y W S N A W M L - A W M E A W E E D T P I G A M P G C Y R L G W R H G V K R T H L L E Q C L D V I G L D G G M . . : . . . . 44928 TCTTGTTGAAGAG : GTCGCAAAGGCAAGGGATGTTGGAGTCAACAGCATTGTGCTCTTCCC S C - R : G R K G K G C W S Q Q H C A L P L V E E : V A K A R D V G V N S I V L F P V L L K R : S Q R Q G M L E S T A L C S S . . . : . . . 47103 AAAAGTTCCAGATGCTTTAAAG : ACCTCTACAGGAGATGAAGCTTACAATGACAATGGATT K S S R C F K : D L Y R R - S L Q - Q W I K V P D A L K : T S T G D E A Y N D N G L Q K F Q M L - R : P L Q E M K L T M T M D . . . . . : . 47245 AGTGCCCCGAACAATACGTTTGCTGAAAGACAAATACCCTGATCTT : GTTATCTACACTGA S A P N N T F A E R Q I P - S : C Y L H - V P R T I R L L K D K Y P D L : V I Y T D - C P E Q Y V C - K T N T L I L : L S T L . . . . . . : 47405 TGTTGCTTTGGATCCATATTCATCTGATGGGCATGATGGCATTGTGAGAGAAGATG : GAGT C C F G S I F I - W A - W H C E R R W : S V A L D P Y S S D G H D G I V R E D : G V M L L W I H I H L M G M M A L - E K M : E . . . . . . : 49307 TATCATGAATGACGAGACTGTGCATCAGTTGTGCAAACAGGCAGTTGCTCAG : GCCAGAGC Y H E - R D C A S V V Q T G S C S : G Q S I M N D E T V H Q L C K Q A V A Q : A R A L S - M T R L C I S C A N R Q L L R : P E . . . . . . 50714 AGGAGCAGATGTTGTCAGTCCAAGTGACATGATGGATGGTCGTGTCGGAGCAATTCGAGC R S R C C Q S K - H D G W S C R S N S S G A D V V S P S D M M D G R V G A I R A Q E Q M L S V Q V T - W M V V S E Q F E . . . . . . : 50774 AGCTCTTGATGCTGAAGGATTTCAGCATGTGTCAATCATGTCATATACGGCAAA : GTATGC S S - C - R I S A C V N H V I Y G K : V C A L D A E G F Q H V S I M S Y T A K : Y A Q L L M L K D F S M C Q S C H I R Q : S M . . . . . . 51276 AAGCTCCTTTTATGGACCTTTCAGAGAGGCTTTAGATTCAAATCCACGTTTTGGAGATAA K L L L W T F Q R G F R F K S T F W R - S S F Y G P F R E A L D S N P R F G D K Q A P F M D L S E R L - I Q I H V L E I . : . . . . . 51336 GAAAAC : TTATCAGATGAACCCCGCAAATTACAGAGAAGCATTAGTTGAGATGCAAGCAGA E N : L S D E P R K L Q R S I S - D A S R K T : Y Q M N P A N Y R E A L V E M Q A D R K : L I R - T P Q I T E K H - L R C K Q . . . : . . . 51491 TGAGTCTGAAGGAGCTGATATTCTTCTT : GTTAAACCAGGTTTGCCTTATTTGGATATTAT - V - R S - Y S S : C - T R F A L F G Y Y E S E G A D I L L : V K P G L P Y L D I I M S L K E L I F F L : L N Q V C L I W I L . . . . . : . 51642 TAGGCTTCTTCGGGATAAATCTCCTTTGCCCATAGCTGCCTATCAG : GTTTCAGGTGAATA - A S S G - I S F A H S C L S : G F R - I R L L R D K S P L P I A A Y Q : V S G E Y L G F F G I N L L C P - L P I R : F Q V N . . . . . . 52773 CTCGATGATCAAAGCAGGTGGGGTTCTAAAAATGATCGATGAAGAAAGGGTTATGATGGA L D D Q S R W G S K N D R - R K G Y D G S M I K A G G V L K M I D E E R V M M E T R - S K Q V G F - K - S M K K G L - W . . . . . . 52833 ATCATTGATGTGCCTTCGACGAGCTGGTGCTGACATAATTTTGACCTATTTTGCTCTGCA I I D V P S T S W C - H N F D L F C S A S L M C L R R A G A D I I L T Y F A L Q N H - C A F D E L V L T - F - P I L L C . . . . . . 52893 AGCCGGTAGATGCCTGTGTGGAGAGAAGAGGTAAAAGCTAGCCGGATCATAAAGGAATTT S R - M P V W R E E V K A S R I I K E F A G R C L C G E K R - K L A G S - R N L K P V D A C V E R R G K S - P D H K G I . . . . . . 52953 GAGACGAAGAAGATTTTCAAGTGAACTTTGTAAACTAGTTGGTGTGAGCTTTGATTTAAA E T K K I F K - T L - T S W C E L - F K R R R R F S S E L C K L V G V S F D L K - D E E D F Q V N F V N - L V - A L I - . . . . . . 53013 AAAGTAGCAGAACGACTATGTTAGCCGAGGGTCAACGGGAACAAGTCAATCTCTCTACCT K V A E R L C - P R V N G N K S I S L P K - Q N D Y V S R G S T G T S Q S L Y L K S S R T T M L A E G Q R E Q V N L S T . . . . . . 53073 CACAAAGGTAGGGTAAGGTGTGCGTACATCCTACCCTCCCCAGATCCCACTTGTGGGACT H K G R V R C A Y I L P S P D P T C G T T K V G - G V R T S Y P P Q I P L V G L S Q R - G K V C V H P T L P R S H L W D . . . . . . 53133 ACACTGGGTATGTGTTGTAATTGAGTACGTTGTGTCTCTATTTTCTTGTTTACTCAAGCA T L G M C C N - V R C V S I F L F T Q A H W V C V V I E Y V V S L F S C L L K H Y T G Y V L - L S T L C L Y F L V Y S S . . . . . . 53193 CCAAATTTGTTTAGATTATTTGATGTGAGCTTGATTTAGAGGATTCCCTTTGTAACCATT P N L F R L F D V S L I - R I P F V T I Q I C L D Y L M - A - F R G F P L - P F T K F V - I I - C E L D L E D S L C N H . . . . . . 53253 TTGTTCATTTCCTAGCTCTAACATTTTGAAGTTATTAATGAAAAAAATAAAAATAAAAAG L F I S - L - H F E V I N E K N K N K K C S F P S S N I L K L L M K K I K I K R F V H F L A L T F - S Y - - K K - K - K . . . 53313 ATGAGTAAAAATTGTTTCAACTTA M S K N C F N L - V K I V S T D E - K L F Q L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-9_AGS-1_PPS_1 (43255 43566,44683 44794,44867 44940,47056 47124,47207 47290,47391 47460,49303 49358,50706 50827,51270 51341,51437 51518,51610 51687,52759 52926) (frame '2'; 1296 bp, 432 residues) 1 AIMASAAMLN APCNIGAVKF EVKLKPSPNL FCARPSVKLN QRRVLTIRAS KEGHDNGSSS 61 GPLRKMGLTD EECEAAVVAG NVPEAPPVPP KPAAPDGTPI VSSLPINRRP RRNRRSSAAR 121 AAFQETNISP ANLVYPLFIH EGEEDTPIGA MPGCYRLGWR HGLVEEVAKA RDVGVNSIVL 181 FPKVPDALKT STGDEAYNDN GLVPRTIRLL KDKYPDLVIY TDVALDPYSS DGHDGIVRED 241 GVIMNDETVH QLCKQAVAQA RAGADVVSPS DMMDGRVGAI RAALDAEGFQ HVSIMSYTAK 301 YASSFYGPFR EALDSNPRFG DKKTYQMNPA NYREALVEMQ ADESEGADIL LVKPGLPYLD 361 IIRLLRDKSP LPIAAYQVSG EYSMIKAGGV LKMIDEERVM MESLMCLRRA GADIILTYFA 421 LQAGRCLCGE KR- AGS-2 (51400 51518,51610 51687,52759 53088) SCR (e 1.000 d 0.977 a 0.986,e 1.000 d 0.999 a 0.996,e 1.000) Exon 1 51400 51518 ( 119 n); score: 1.000 Intron 1 51519 51609 ( 91 n); Pd: 0.977 Pa: 0.986 Exon 2 51610 51687 ( 78 n); score: 1.000 Intron 2 51688 52758 (1071 n); Pd: 0.999 Pa: 0.996 Exon 3 52759 53088 ( 330 n); score: 1.000 PGS (51400 51518,51610 51687,52759 53088) SGN-E279461+ 3-phase translation of AGS-2 (+strand): . . . . . . 51400 CAAGATGAGTGTCTTTGAACTTGGTTTTCACATGCAGTTATCAGATGAACCCCGCAAATT Q D E C L - T W F S H A V I R - T P Q I K M S V F E L G F H M Q L S D E P R K L R - V S L N L V F T C S Y Q M N P A N . . . . . . : 51460 ACAGAGAAGCATTAGTTGAGATGCAAGCAGATGAGTCTGAAGGAGCTGATATTCTTCTT : G T E K H - L R C K Q M S L K E L I F F L : Q R S I S - D A S R - V - R S - Y S S : C Y R E A L V E M Q A D E S E G A D I L L : . . . . . . 51611 TTAAACCAGGTTTGCCTTATTTGGATATTATTAGGCTTCTTCGGGATAAATCTCCTTTGC L N Q V C L I W I L L G F F G I N L L C - T R F A L F G Y Y - A S S G - I S F A V K P G L P Y L D I I R L L R D K S P L . . : . . . . 51671 CCATAGCTGCCTATCAG : GTTTCAGGTGAATACTCGATGATCAAAGCAGGTGGGGTTCTAA P - L P I R : F Q V N T R - S K Q V G F - H S C L S : G F R - I L D D Q S R W G S K P I A A Y Q : V S G E Y S M I K A G G V L . . . . . . 52802 AAATGATCGATGAAGAAAGGGTTATGATGGAATCATTGATGTGCCTTCGACGAGCTGGTG K - S M K K G L - W N H - C A F D E L V N D R - R K G Y D G I I D V P S T S W C K M I D E E R V M M E S L M C L R R A G . . . . . . 52862 CTGACATAATTTTGACCTATTTTGCTCTGCAAGCCGGTAGATGCCTGTGTGGAGAGAAGA L T - F - P I L L C K P V D A C V E R R - H N F D L F C S A S R - M P V W R E E A D I I L T Y F A L Q A G R C L C G E K . . . . . . 52922 GGTAAAAGCTAGCCGGATCATAAAGGAATTTGAGACGAAGAAGATTTTCAAGTGAACTTT G K S - P D H K G I - D E E D F Q V N F V K A S R I I K E F E T K K I F K - T L R - K L A G S - R N L R R R R F S S E L . . . . . . 52982 GTAAACTAGTTGGTGTGAGCTTTGATTTAAAAAAGTAGCAGAACGACTATGTTAGCCGAG V N - L V - A L I - K S S R T T M L A E - T S W C E L - F K K V A E R L C - P R C K L V G V S F D L K K - Q N D Y V S R . . . . . 53042 GGTCAACGGGAACAAGTCAATCTCTCTACCTCACAAAGGTAGGGTAA G Q R E Q V N L S T S Q R - G V N G N K S I S L P H K G R V G S T G T S Q S L Y L T K V G - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-9_AGS-2_PPS_1 (51408 51518,51610 51687,52759 52926) (frame '0'; 354 bp, 118 residues) 1 VSLNLVFTCS YQMNPANYRE ALVEMQADES EGADILLVKP GLPYLDIIRL LRDKSPLPIA 61 AYQVSGEYSM IKAGGVLKMI DEERVMMESL MCLRRAGADI ILTYFALQAG RCLCGEKR- PGL 10 (- strand): 57781 57448 AGS-1 (57781 57448) SCR (e 0.943) Exon 1 57781 57448 ( 334 n); score: 0.943 PGS (57781 57448) SGN-E216161- 3-phase translation of AGS-1 (-strand): . . . . . . 57781 TCAATCAGCTATCAGCAATAGCTAGTGCCTGGGCTTAGAAATCCTATGGATGAGCTGAAA S I S Y Q Q - L V P G L R N P M D E L K Q S A I S N S - C L G L E I L W M S - N N Q L S A I A S A W A - K S Y G - A E . . . . . . 57721 TAGAACCTCGGAAGTGTCAAGGAAGAAGTTTGGATAGCGACTACAAGAATTCAGAGAGGA - N L G S V K E E V W I A T T R I Q R G R T S E V S R K K F G - R L Q E F R E D I E P R K C Q G R S L D S D Y K N S E R . . . . . . 57661 TAACTTGTGTCAAAATTATATATTATGATTGTTTTCCCATTTAACCCCTTTTTAAGTTTT - L V S K L Y I M I V F P F N P F L S F N L C Q N Y I L - L F S H L T P F - V F I T C V K I I Y Y D C F P I - P L F K F . . . . . . 57601 CTAGAGATCTAATTCTTTACCAAGGGGGCATTGCATAGCTTTCTCTTTCAACATTGTCAG L E I - F F T K G A L H S F L F Q H C Q - R S N S L P R G H C I A F S F N I V R S R D L I L Y Q G G I A - L S L S T L S . . . . . . 57541 AGAGCTTCTTCAGATGTTGACAATAAACTGGAAAAAATCATGATATCTCCTCGTCACAAT R A S S D V D N K L E K I M I S P R H N E L L Q M L T I N W K K S - Y L L V T I E S F F R C - Q - T G K N H D I S S S Q . . . . 57481 AGAACAAGCTTGCAATTTTTTTCCAGGATTTCAA R T S L Q F F S R I S E Q A C N F F P G F Q - N K L A I F F Q D F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 57448 TTGAAATCCTGGAAAAAAATTGCAAGCTTGTTCTATTGTGACGAGGAGATATCATGATTT L K S W K K I A S L F Y C D E E I S - F - N P G K K L Q A C S I V T R R Y H D F E I L E K N C K L V L L - R G D I M I . . . . . . 57508 TTTCCAGTTTATTGTCAACATCTGAAGAAGCTCTCTGACAATGTTGAAAGAGAAAGCTAT F P V Y C Q H L K K L S D N V E R E S Y F Q F I V N I - R S S L T M L K E K A M F S S L L S T S E E A L - Q C - K R K L . . . . . . 57568 GCAATGCCCCCTTGGTAAAGAATTAGATCTCTAGAAAACTTAAAAAGGGGTTAAATGGGA A M P P W - R I R S L E N L K R G - M G Q C P L G K E L D L - K T - K G V K W E C N A P L V K N - I S R K L K K G L N G . . . . . . 57628 AAACAATCATAATATATAATTTTGACACAAGTTATCCTCTCTGAATTCTTGTAGTCGCTA K Q S - Y I I L T Q V I L S E F L - S L N N H N I - F - H K L S S L N S C S R Y K T I I I Y N F D T S Y P L - I L V V A . . . . . . 57688 TCCAAACTTCTTCCTTGACACTTCCGAGGTTCTATTTCAGCTCATCCATAGGATTTCTAA S K L L P - H F R G S I S A H P - D F - P N F F L D T S E V L F Q L I H R I S K I Q T S S L T L P R F Y F S S S I G F L . . . . 57748 GCCCAGGCACTAGCTATTGCTGATAGCTGATTGA A Q A L A I A D S - L P R H - L L L I A D - S P G T S Y C - - L I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (- strand): 58713 58296 AGS-1 (58713 58296) SCR (e 0.998) Exon 1 58713 58296 ( 418 n); score: 0.998 PGS (58713 58296) SGN-E275775+ 3-phase translation of AGS-1 (-strand): . . . . . . 58713 AGGATACAATTAAAGTGGAAAACAAACCGGGTTCCACAGACCAACATGTTGAATGTCTCA R I Q L K W K T N R V P Q T N M L N V S G Y N - S G K Q T G F H R P T C - M S Q D T I K V E N K P G S T D Q H V E C L . . . . . . 58653 GTGAAACAGGGTCTCCAGCTACAGTTGTTGATTCTTTTTCACCGCCAACTCTTAATGGTT V K Q G L Q L Q L L I L F H R Q L L M V - N R V S S Y S C - F F F T A N S - W F S E T G S P A T V V D S F S P P T L N G . . . . . . 58593 CAGAATCTAAGATAATTGGTGCCAAAGAGGAGCTATTCTCCTTGACCAACCCCGAGGACA Q N L R - L V P K R S Y S P - P T P R T R I - D N W C Q R G A I L L D Q P R G Q S E S K I I G A K E E L F S L T N P E D . . . . . . 58533 GAATGGAGGTAGATTTTGTGGCAAGTTCTTATGTCCAGCAGGAGCTGCAGGATGTTAAAC E W R - I L W Q V L M S S R S C R M L N N G G R F C G K F L C P A G A A G C - T R M E V D F V A S S Y V Q Q E L Q D V K . . . . . . 58473 CATACATTAGAGCTGTAGGAACTTCTTTCCCTAGAGTGGTATCCAGTAGTTCCTTTGGGG H T L E L - E L L S L E W Y P V V P L G I H - S C R N F F P - S G I Q - F L W G P Y I R A V G T S F P R V V S S S S F G . . . . . . 58413 TTAGTTCTTTGGCTGAAGCTGACATTCAAGAATGTGAAACAATATCCCCTGTTTCTGACA L V L W L K L T F K N V K Q Y P L F L T - F F G - S - H S R M - N N I P C F - Q V S S L A E A D I Q E C E T I S P V S D . . . . . . 58353 GTAAAGATGGTACTGAACCATGTCAAAGAACCACAAATGACTGTCTTTTGAATTCTTC V K M V L N H V K E P Q M T V F - I L - R W Y - T M S K N H K - L S F E F F S K D G T E P C Q R T T N D C L L N S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-11_AGS-1_PPS_1 (58711 58298) (frame '0'; 414 bp, 138 residues) 1 DTIKVENKPG STDQHVECLS ETGSPATVVD SFSPPTLNGS ESKIIGAKEE LFSLTNPEDR 61 MEVDFVASSY VQQELQDVKP YIRAVGTSFP RVVSSSSFGV SSLAEADIQE CETISPVSDS 121 KDGTEPCQRT TNDCLLNS 3-phase translation of AGS-1 (+strand): . . . . . . 58296 GAAGAATTCAAAAGACAGTCATTTGTGGTTCTTTGACATGGTTCAGTACCATCTTTACTG E E F K R Q S F V V L - H G S V P S L L K N S K D S H L W F F D M V Q Y H L Y C R I Q K T V I C G S L T W F S T I F T . . . . . . 58356 TCAGAAACAGGGGATATTGTTTCACATTCTTGAATGTCAGCTTCAGCCAAAGAACTAACC S E T G D I V S H S - M S A S A K E L T Q K Q G I L F H I L E C Q L Q P K N - P V R N R G Y C F T F L N V S F S Q R T N . . . . . . 58416 CCAAAGGAACTACTGGATACCACTCTAGGGAAAGAAGTTCCTACAGCTCTAATGTATGGT P K E L L D T T L G K E V P T A L M Y G Q R N Y W I P L - G K K F L Q L - C M V P K G T T G Y H S R E R S S Y S S N V W . . . . . . 58476 TTAACATCCTGCAGCTCCTGCTGGACATAAGAACTTGCCACAAAATCTACCTCCATTCTG L T S C S S C W T - E L A T K S T S I L - H P A A P A G H K N L P Q N L P P F C F N I L Q L L L D I R T C H K I Y L H S . . . . . . 58536 TCCTCGGGGTTGGTCAAGGAGAATAGCTCCTCTTTGGCACCAATTATCTTAGATTCTGAA S S G L V K E N S S S L A P I I L D S E P R G W S R R I A P L W H Q L S - I L N V L G V G Q G E - L L F G T N Y L R F - . . . . . . 58596 CCATTAAGAGTTGGCGGTGAAAAAGAATCAACAACTGTAGCTGGAGACCCTGTTTCACTG P L R V G G E K E S T T V A G D P V S L H - E L A V K K N Q Q L - L E T L F H - T I K S W R - K R I N N C S W R P C F T . . . . . . 58656 AGACATTCAACATGTTGGTCTGTGGAACCCGGTTTGTTTTCCACTTTAATTGTATCCT R H S T C W S V E P G L F S T L I V S D I Q H V G L W N P V C F P L - L Y P E T F N M L V C G T R F V F H F N C I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-11_AGS-1_PPS_1 (58298 58561) (frame '0'; 261 bp, 87 residues) 1 RIQKTVICGS LTWFSTIFTV RNRGYCFTFL NVSFSQRTNP KGTTGYHSRE RSSYSSNVWF 61 NILQLLLDIR TCHKIYLHSV LGVGQGE- PGL 12 (+ strand): 59890 60074 AGS-1 (59890 60074) SCR (e 0.889) Exon 1 59890 60074 ( 185 n); score: 0.889 PGS (59890 60047) SGN-E318957- PGS (59927 60074) SGN-E393272+ PGS (59927 60074) SGN-E210228+ PGS (59927 60074) SGN-E376578+ 3-phase translation of AGS-1 (+strand): . . . . . . 59890 TTCCATGTGGCATGTTTAAGACCACAAGATTAAAGGGCATTTTGGTACATTTGACATAAC F H V A C L R P Q D - R A F W Y I - H N S M W H V - D H K I K G H F G T F D I T P C G M F K T T R L K G I L V H L T - . . . . . . 59950 TTTAATTTAGAACCACAAGATTAATTGGTCTTCTTTCTTTTCTTAACTCCGTTCCAAGTC F N L E P Q D - L V F F L F L T P F Q V L I - N H K I N W S S F F S - L R S K S L - F R T T R L I G L L S F L N S V P S . . . . . . 60010 AAACTAGGTCATTCTTTTTTAAACGGAGGGAGTAATATTTTTATTATTCAAACAGATCTA K L G H S F L N G G S N I F I I Q T D L N - V I L F - T E G V I F L L F K Q I Y Q T R S F F F K R R E - Y F Y Y S N R S . 60070 TTGAG L - I E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 60074 CTCAATAGATCTGTTTGAATAATAAAAATATTACTCCCTCCGTTTAAAAAAGAATGACCT L N R S V - I I K I L L P P F K K E - P S I D L F E - - K Y Y S L R L K K N D L Q - I C L N N K N I T P S V - K R M T . . . . . . 60014 AGTTTGACTTGGAACGGAGTTAAGAAAAGAAAGAAGACCAATTAATCTTGTGGTTCTAAA S L T W N G V K K R K K T N - S C G S K V - L G T E L R K E R R P I N L V V L N - F D L E R S - E K K E D Q L I L W F - . . . . . . 59954 TTAAAGTTATGTCAAATGTACCAAAATGCCCTTTAATCTTGTGGTCTTAAACATGCCACA L K L C Q M Y Q N A L - S C G L K H A T - S Y V K C T K M P F N L V V L N M P H I K V M S N V P K C P L I L W S - T C H . 59894 TGGAA W G M E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (- strand): 64121 61570 AGS-1 (64121 64075,63979 63817,63674 63551,62656 62499,61605 61570) SCR (e 1.000 d 0.000 a 0.893,e 1.000 d 1.000 a 0.996,e 1.000 d 0.986 a 0.890,e 1.000 d 0.751 a 0.991,e 1.000) Exon 1 64121 64075 ( 47 n); score: 1.000 Intron 1 64074 63980 ( 95 n); Pd: 0.000 Pa: 0.893 Exon 2 63979 63817 ( 163 n); score: 1.000 Intron 2 63816 63675 ( 142 n); Pd: 1.000 Pa: 0.996 Exon 3 63674 63551 ( 124 n); score: 1.000 Intron 3 63550 62657 ( 894 n); Pd: 0.986 Pa: 0.890 Exon 4 62656 62499 ( 158 n); score: 1.000 Intron 4 62498 61606 ( 893 n); Pd: 0.751 Pa: 0.991 Exon 5 61605 61570 ( 36 n); score: 1.000 PGS (64121 64075,63979 63817,63674 63551,62656 62499,61605 61570) SGN-E248609+ 3-phase translation of AGS-1 (-strand): . . . . . : . 64121 CAAGCCACTTGTTGCCTACTTGTTGGAAAAAGGCCATCTGAGAGAAT : GTAGGCGGAATGG Q A T C C L L V G K R P S E R M : - A E W K P L V A Y L L E K G H L R E : C R R N G S H L L P T C W K K A I - E N : V G G M . . . . . . 63966 TTGGTGCTTCCTTTGTGAATTTCAACACCATGTAGAACGGGCTAGTCGGAGTCAGCAGCC L V L P L - I S T P C R T G - S E S A A W C F L C E F Q H H V E R A S R S Q Q P V G A S F V N F N T M - N G L V G V S S . . . . . . 63906 CTTCTCACCAATCAACATACTTTCACGGTTGCCTAATATTGGTGGTAATCTCGGGTATGG L L T N Q H T F T V A - Y W W - S R V W F S P I N I L S R L P N I G G N L G Y G P S H Q S T Y F H G C L I L V V I S G M . . . : . . . 63846 TAAGCAGGAGGATGCGCATGAATTTATGAG : GTTTGCTATTGACATGATGCAGTCTGTGTG - A G G C A - I Y E : V C Y - H D A V C V K Q E D A H E F M R : F A I D M M Q S V C V S R R M R M N L - : G L L L T - C S L C . . . . . . 63644 TCTTGATGAATTTGGTGGAGAGAAGGCTGTTCCTCCTAACACACAGGAGACAACACTTAT S - - I W W R E G C S S - H T G D N T Y L D E F G G E K A V P P N T Q E T T L I V L M N L V E R R L F L L T H R R Q H L . . . . : . . 63584 TCAGCACATATTTGGTGGTCACCTGCAATCTCAG : GTCATATGTACAGAATGCAGTAATGT S A H I W W S P A I S : G H M Y R M Q - C Q H I F G G H L Q S Q : V I C T E C S N V F S T Y L V V T C N L R : S Y V Q N A V M . . . . . . 62630 CTCAAATCAGATTGAAAATATGATGGATCTGACAGTAGAGATTCATGGGGATGCTGAATC L K S D - K Y D G S D S R D S W G C - I S N Q I E N M M D L T V E I H G D A E S S Q I R L K I - W I - Q - R F M G M L N . . . . . . 62570 TTTGGAGGAGTGCTTAGATCAATTCACTGCTAGAGAATGGCTTGATGGCGATAACTTGTA F G G V L R S I H C - R M A - W R - L V L E E C L D Q F T A R E W L D G D N L Y L W R S A - I N S L L E N G L M A I T C . . : . . . 62510 TAAATGTGATGG : ATGCAATGACTATGTCAAAGCATGGAAGCGCCTTAT - M - W : M Q - L C Q S M E A P Y K C D G : C N D Y V K A W K R L I N V M : D A M T M S K H G S A L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-13_AGS-1_PPS_1 (64120 64075,63979 63817,63674 63551,62656 62499,61605 61572) (frame '2'; 525 bp, 175 residues) 1 KPLVAYLLEK GHLRECRRNG WCFLCEFQHH VERASRSQQP FSPINILSRL PNIGGNLGYG 61 KQEDAHEFMR FAIDMMQSVC LDEFGGEKAV PPNTQETTLI QHIFGGHLQS QVICTECSNV 121 SNQIENMMDL TVEIHGDAES LEECLDQFTA REWLDGDNLY KCDGCNDYVK AWKRL AGS-2 (62327 62192) SCR (e 0.919) Exon 1 62327 62192 ( 136 n); score: 0.919 PGS (62327 62192) SGN-E243114- 3-phase translation of AGS-2 (-strand): . . . . . . 62327 ACATTAAAACCGAAATATTCCTACTTGAACAAGAAGTTCTATAGTTTACAACTCTTCTTT T L K P K Y S Y L N K K F Y S L Q L F F H - N R N I P T - T R S S I V Y N S S L I K T E I F L L E Q E V L - F T T L L . . . . . . 62267 GTATAGTAATTTGACCTATTGCTCCGCAACCCCCCATCAGTTTACTAATAAGATCAAAAT V - - F D L L L R N P P S V Y - - D Q N Y S N L T Y C S A T P H Q F T N K I K I C I V I - P I A P Q P P I S L L I R S K . . 62207 AAAAAGGTTCGAACTA K K V R T K R F E L - K G S N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 62192 TAGTTCGAACCTTTTTATTTTGATCTTATTAGTAAACTGATGGGGGGTTGCGGAGCAATA - F E P F Y F D L I S K L M G G C G A I S S N L F I L I L L V N - W G V A E Q - V R T F L F - S Y - - T D G G L R S N . . . . . . 62252 GGTCAAATTACTATACAAAGAAGAGTTGTAAACTATAGAACTTCTTGTTCAAGTAGGAAT G Q I T I Q R R V V N Y R T S C S S R N V K L L Y K E E L - T I E L L V Q V G I R S N Y Y T K K S C K L - N F L F K - E . . 62312 ATTTCGGTTTTAATGT I S V L M F R F - C Y F G F N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (+ strand): 68150 68587 AGS-1 (68150 68587) SCR (e 0.823) Exon 1 68150 68587 ( 438 n); score: 0.823 PGS (68150 68587) SGN-E205976+ 3-phase translation of AGS-1 (+strand): . . . . . . 68150 CCAAGCTCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGC P S S S K M G Q P S N Q E N R V I C Q S Q A R V K W V S Q V I K K I E L F V K A K L E - N G S A K - S R K - S Y L S K . . . . . . 68210 CAAAAATAATATATTAAAGGTATAAGTTGATACAAAAAGGAAAACCTTAAATATATTATT Q K - Y I K G I S - Y K K E N L K Y I I K N N I L K V - V D T K R K T L N I L L P K I I Y - R Y K L I Q K G K P - I Y Y . . . . . . 68270 AAGGATTGTACTTTAAAAGGGAATCCTTGTTTAACAATAACTTCTTTACCTTATCTGATA K D C T L K G N P C L T I T S L P Y L I R I V L - K G I L V - Q - L L Y L I - - - G L Y F K R E S L F N N N F F T L S D . . . . . . 68330 AGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATTGAAAATTTCACGA R T E G K R N S I R R R R R - L K I S R G L K A K G T L - E E E D A D - K F H D K D - R Q K E L Y K K K K T L I E N F T . . . . . . 68390 CTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGA L H A E N K G E L F I K L K S S R L I G F T Q R T R E N Y S S N - S L Q G - - D T S R R E Q G R I I H Q I E V F K V D R . . . . . . 68450 TTACTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTATATAACTATTTGCCTTG L L R L K H S - V R R F Y R I - L F A L Y Y V - N I L E - E G F I V Y N Y L P C I T T F K T F L S K K V L S Y I T I C L . . . . . . 68510 TTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTA F L F L I V V Y S L L Y K G W V W L F V F C S - L - F T V Y C T K G G F G S L - V F V L N C S L Q F I V Q R V G L A L C . . 68570 GGGTTGAGTGTTAGTAAG G L S V S K G - V L V R V E C - - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-14_AGS-1_PPS_1 (68338 68583) (frame '0'; 243 bp, 81 residues) 1 RQKELYKKKK TLIENFTTSR REQGRIIHQI EVFKVDRITT FKTFLSKKVL SYITICLVFV 61 LNCSLQFIVQ RVGLALCRVE C- 3-phase translation of AGS-1 (-strand): . . . . . . 68587 CTTACTAACACTCAACCCTACAAAGAGCCAAACCCACCCTTTGTACAATAAACTGTAAAC L T N T Q P Y K E P N P P F V Q - T V N L L T L N P T K S Q T H P L Y N K L - T Y - H S T L Q R A K P T L C T I N C K . . . . . . 68527 TACAATTAAGAACAAAAACAAGGCAAATAGTTATATACGATAAAACCTTCTTACTCAAGA Y N - E Q K Q G K - L Y T I K P S Y S R T I K N K N K A N S Y I R - N L L T Q E L Q L R T K T R Q I V I Y D K T F L L K . . . . . . 68467 ATGTTTTAAACGTAGTAATCCTATCAACCTTGAAGACTTCAATTTGATGAATAATTCTCC M F - T - - S Y Q P - R L Q F D E - F S C F K R S N P I N L E D F N L M N N S P N V L N V V I L S T L K T S I - - I I L . . . . . . 68407 CTTGTTCTCTGCGTGAAGTCGTGAAATTTTCAATCAGCGTCTTCTTCTTCTTATAGAGTT L V L C V K S - N F Q S A S S S S Y R V L F S A - S R E I F N Q R L L L L I E F P C S L R E V V K F S I S V F F F L - S . . . . . . 68347 CCTTTTGCCTTCAGTCCTTATCAGATAAGGTAAAGAAGTTATTGTTAAACAAGGATTCCC P F A F S P Y Q I R - R S Y C - T R I P L L P S V L I R - G K E V I V K Q G F P S F C L Q S L S D K V K K L L L N K D S . . . . . . 68287 TTTTAAAGTACAATCCTTAATAATATATTTAAGGTTTTCCTTTTTGTATCAACTTATACC F - S T I L N N I F K V F L F V S T Y T F K V Q S L I I Y L R F S F L Y Q L I P L L K Y N P - - Y I - G F P F C I N L Y . . . . . . 68227 TTTAATATATTATTTTTGGCTTTGACAAATAACTCTATTTTCTTGATTACTTGGCTGACC F N I L F L A L T N N S I F L I T W L T L I Y Y F W L - Q I T L F S - L L G - P L - Y I I F G F D K - L Y F L D Y L A D . . 68167 CATTTTACTCGAGCTTGG H F T R A W I L L E L P F Y S S L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 70804 71511 AGS-1 (70804 70901,70950 71018,71171 71510) SCR (e 0.893 d 0.724 a 0.000,e 0.884 d 0.000 a 0.000,e 0.895) Exon 1 70804 70901 ( 98 n); score: 0.893 Intron 1 70902 70949 ( 48 n); Pd: 0.724 Pa: 0.000 Exon 2 70950 71018 ( 69 n); score: 0.884 Intron 2 71019 71170 ( 152 n); Pd: 0.000 Pa: 0.000 Exon 3 71171 71510 ( 340 n); score: 0.895 PGS (70804 70901,70950 71018,71171 71221) SGN-E578389- PGS (71167 71510) SGN-E394141- PGS (71214 71510) SGN-E392605- 3-phase translation of AGS-1 (+strand): . . . . . . 70804 TAATTAAGGTCAACTTTCACATATAGCAAACAAAAAATTCATATTTGTATAATATAGCAA - L R S T F T Y S K Q K I H I C I I - Q N - G Q L S H I A N K K F I F V - Y S K I K V N F H I - Q T K N S Y L Y N I A . . . . : . . 70864 ACTTTGCATAATTGCGCTCCATAGCAAACATAAAAACT : GTATAATTCGCCGGCCTAAATT T L H N C A P - Q T - K L : Y N S P A - I L C I I A L H S K H K N : C I I R R P K L N F A - L R S I A N I K T : V - F A G L N . . . . . : . 70972 GTATAATTCGCTAGCCTATTTCGCTGAAGTTGTATAATTTGCTTTGC : TGTATAATTCGCA V - F A S L F R - S C I I C F A : V - F A Y N S L A Y F A E V V - F A L : L Y N S Q C I I R - P I S L K L Y N L L C : C I I R . . . . . . 71184 ATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGT I V - F V G L F L C N F - S K M F V N C L Y N S L A F F S A I F E V K C L - I V N C I I R W P F S L Q F L K - N V C K L . . . . . . 71244 ATAATTAAGTGTATAACACGAAGATATACATTTTTGCATTTGTATATACAATTTTCTCTC I I K C I T R R Y T F L H L Y I Q F S L - L S V - H E D I H F C I C I Y N F L S Y N - V Y N T K I Y I F A F V Y T I F S . . . . . . 71304 GCTTTATACAAAACAGAAACAAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGC A L Y K T E T K L Y T S V Y K A R E A S L Y T K Q K Q N Y T L L C I K R E R R A R F I Q N R N K I I H F C V - S E R G E . . . . . . 71364 GAGAATGGAAAGTGGCGAGCGAGATTCCTGGGAGAGAGACGCTGGCAAATTTTAGATAAT E N G K W R A R F L G E R R W Q I L D N R M E S G E R D S W E R D A G K F - I M R E W K V A S E I P G R E T L A N F R - . . . . . . 71424 GTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTCTATTTAATTTAGATTATTAG V C Y G A Q L N Q T L T I L F N L D Y - F A M E H N - I K P - L F Y L I - I I S C L L W S T I K S N P N Y S I - F R L L . . . 71484 TTTACTATTTTATACAATTTTCCCGAT F T I L Y N F P D L L F Y T I F P V Y Y F I Q F S R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-15_AGS-1_PPS_1 (71223 71483) (frame '1'; 258 bp, 86 residues) 1 SKMFVNCIIK CITRRYTFLH LYIQFSLALY KTETKLYTSV YKAREASENG KWRARFLGER 61 RWQILDNVCY GAQLNQTLTI LFNLDY- AGS-2 (70804 70971) SCR (e 0.911) Exon 1 70804 70971 ( 168 n); score: 0.911 PGS (70804 70971) SGN-E379427- 3-phase translation of AGS-2 (+strand): . . . . . . 70804 TAATTAAGGTCAACTTTCACATATAGCAAACAAAAAATTCATATTTGTATAATATAGCAA - L R S T F T Y S K Q K I H I C I I - Q N - G Q L S H I A N K K F I F V - Y S K I K V N F H I - Q T K N S Y L Y N I A . . . . . . 70864 ACTTTGCATAATTGCGCTCCATAGCAAACATAAAAACTGTATAATTCGCTATACATATAC T L H N C A P - Q T - K L Y N S L Y I Y L C I I A L H S K H K N C I I R Y T Y T N F A - L R S I A N I K T V - F A I H I . . . . . 70924 AAGTGTATAATTCGCTGGCCTAAATTGTATAATTCGCCGGCCTAAATT K C I I R W P K L Y N S P A - I S V - F A G L N C I I R R P K Q V Y N S L A - I V - F A G L N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 70971 AATTTAGGCCGGCGAATTATACAATTTAGGCCAGCGAATTATACACTTGTATATGTATAG N L G R R I I Q F R P A N Y T L V Y V - I - A G E L Y N L G Q R I I H L Y M Y S F R P A N Y T I - A S E L Y T C I C I . . . . . . 70911 CGAATTATACAGTTTTTATGTTTGCTATGGAGCGCAATTATGCAAAGTTTGCTATATTAT R I I Q F L C L L W S A I M Q S L L Y Y E L Y S F Y V C Y G A Q L C K V C Y I I A N Y T V F M F A M E R N Y A K F A I L . . . . . 70851 ACAAATATGAATTTTTTGTTTGCTATATGTGAAAGTTGACCTTAATTA T N M N F L F A I C E S - P - L Q I - I F C L L Y V K V D L N Y K Y E F F V C Y M - K L T L I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (71036 71511) SCR (e 0.905) Exon 1 71036 71511 ( 476 n); score: 0.905 PGS (71036 71511) SGN-E393065+ PGS (71036 71510) SGN-E379112- PGS (71036 71507) SGN-E394609+ PGS (71036 71357) SGN-E393076+ PGS (71036 71337) SGN-E393075+ PGS (71037 71507) SGN-E379618+ PGS (71037 71483) SGN-E200845+ 3-phase translation of AGS-3 (+strand): . . . . . . 71036 TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATGTTTTTCTCG - N V C I L H N Y K F I A K R Y M F F S K M Y V Y C I I I S L - Q K D I C F S R K C M Y I A - L - V Y S K K I Y V F L . . . . . . 71096 CTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATT L Y T K T E T Q Y I H F C C I K L E K I F I Q K Q K H N I Y T S V V - S - R K L A L Y K N R N T I Y T L L L Y K A R E N . . . . . . 71156 GTATTTTACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAA V F Y C N C I I R N C I I R W P F S L Q Y F T A I V - F A I V - F V G L F L C N C I L L Q L Y N S Q L Y N S L A F F S A . . . . . . 71216 TTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATT F L K - N V C K L Y N - V Y N T K I Y I F - S K M F V N C I I K C I T R R Y T F I F E V K C L - I V - L S V - H E D I H . . . . . . 71276 TTTGCATTTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTATACAC F A F V Y T I F S R F I Q N R N K I I H L H L Y I Q F S L A L Y K T E T K L Y T F C I C I Y N F L S L Y T K Q K Q N Y T . . . . . . 71336 TTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAAAGTGGCGAGCGAGATTCCTGGG F C V - S E R G E R E W K V A S E I P G S V Y K A R E A S E N G K W R A R F L G L L C I K R E R R A R M E S G E R D S W . . . . . . 71396 AGAGAGACGCTGGCAAATTTTAGATAATGTTTGCTATGGAGCACAATTAAATCAAACCCT R E T L A N F R - C L L W S T I K S N P E R R W Q I L D N V C Y G A Q L N Q T L E R D A G K F - I M F A M E H N - I K P . . . . . . 71456 AACTATTCTATTTAATTTAGATTATTAGTTTACTATTTTATACAATTTTCCCGATA N Y S I - F R L L V Y Y F I Q F S R T I L F N L D Y - F T I L Y N F P D - L F Y L I - I I S L L F Y T I F P I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-15_AGS-3_PPS_1 (71223 71483) (frame '2'; 258 bp, 86 residues) 1 SKMFVNCIIK CITRRYTFLH LYIQFSLALY KTETKLYTSV YKAREASENG KWRARFLGER 61 RWQILDNVCY GAQLNQTLTI LFNLDY- 3-phase translation of AGS-3 (-strand): . . . . . . 71511 TATCGGGAAAATTGTATAAAATAGTAAACTAATAATCTAAATTAAATAGAATAGTTAGGG Y R E N C I K - - T N N L N - I E - L G I G K I V - N S K L I I - I K - N S - G S G K L Y K I V N - - S K L N R I V R . . . . . . 71451 TTTGATTTAATTGTGCTCCATAGCAAACATTATCTAAAATTTGCCAGCGTCTCTCTCCCA F D L I V L H S K H Y L K F A S V S L P L I - L C S I A N I I - N L P A S L S Q V - F N C A P - Q T L S K I C Q R L S P . . . . . . 71391 GGAATCTCGCTCGCCACTTTCCATTCTCGCTCGCCTCTCTCGCTTTATACACAGAAGTGT G I S L A T F H S R S P L S L Y T Q K C E S R S P L S I L A R L S R F I H R S V R N L A R H F P F S L A S L A L Y T E V . . . . . . 71331 ATAATTTTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACAAATGCAAAAATG I I L F L F C I K R E K I V Y T N A K M - F C F C F V - S E R K L Y I Q M Q K C Y N F V S V L Y K A R E N C I Y K C K N . . . . . . 71271 TATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAAAATTGC Y I F V L Y T - L Y N L Q T F Y F K N C I S S C Y T L N Y T I Y K H F T S K I A V Y L R V I H L I I Q F T N I L L Q K L . . . . . . 71211 AGAGAAAAAGGCCAACGAATTATACAATTGCGAATTATACAATTGCAGTAAAATACAATT R E K G Q R I I Q L R I I Q L Q - N T I E K K A N E L Y N C E L Y N C S K I Q F Q R K R P T N Y T I A N Y T I A V K Y N . . . . . . 71151 TTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTGTTTTTGTATAAAGCGAG F S S F I Q Q K C I Y C V S V F V - S E S L A L Y N R S V Y I V F L F L Y K A R F L - L Y T T E V Y I L C F C F C I K R . . . . . . 71091 AAAAACATATATCTTTTTGCTATAAACTTATAATTATGCAATATACATACATTTTA K N I Y L F A I N L - L C N I H T F K T Y I F L L - T Y N Y A I Y I H F E K H I S F C Y K L I I M Q Y T Y I L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-15_AGS-3_PPS_1 (71428 71144) (frame '0'; 282 bp, 94 residues) 1 QTLSKICQRL SPRNLARHFP FSLASLALYT EVYNFVSVLY KARENCIYKC KNVYLRVIHL 61 IIQFTNILLQ KLQRKRPTNY TIANYTIAVK YNFL- PGL 16 (+ strand): 74578 79496 AGS-1 (74578 74667,74905 75013,75122 75189,75410 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79496) SCR (e 1.000 d 0.815 a 0.999,e 1.000 d 0.959 a 0.997,e 1.000 d 0.567 a 0.925,e 1.000 d 0.995 a 0.999,e 1.000 d 0.983 a 0.960,e 1.000 d 1.000 a 0.998,e 1.000 d 0.998 a 0.993,e 1.000 d 0.024 a 0.995,e 1.000 d 0.999 a 0.963,e 1.000 d 0.991 a 0.511,e 1.000) Exon 1 74578 74667 ( 90 n); score: 1.000 Intron 1 74668 74904 ( 237 n); Pd: 0.815 Pa: 0.999 Exon 2 74905 75013 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 Pa: 0.997 Exon 3 75122 75189 ( 68 n); score: 1.000 Intron 3 75190 75409 ( 220 n); Pd: 0.567 Pa: 0.925 Exon 4 75410 75621 ( 212 n); score: 1.000 Intron 4 75622 75706 ( 85 n); Pd: 0.995 Pa: 0.999 Exon 5 75707 75770 ( 64 n); score: 1.000 Intron 5 75771 77503 (1733 n); Pd: 0.983 Pa: 0.960 Exon 6 77504 77576 ( 73 n); score: 1.000 Intron 6 77577 77656 ( 80 n); Pd: 1.000 Pa: 0.998 Exon 7 77657 77777 ( 121 n); score: 1.000 Intron 7 77778 77888 ( 111 n); Pd: 0.998 Pa: 0.993 Exon 8 77889 77976 ( 88 n); score: 1.000 Intron 8 77977 78084 ( 108 n); Pd: 0.024 Pa: 0.995 Exon 9 78085 78210 ( 126 n); score: 1.000 Intron 9 78211 78796 ( 586 n); Pd: 0.999 Pa: 0.963 Exon 10 78797 78906 ( 110 n); score: 1.000 Intron 10 78907 78992 ( 86 n); Pd: 0.991 Pa: 0.511 Exon 11 78993 79496 ( 504 n); score: 1.000 PGS (74578 74667,74905 75013,75122 75189,75410 75621,75707 75770,77504 77576,77657 77704) SGN-E551354+ PGS (74579 74667,74905 75013,75122 75189,75410 75621,75707 75770,77504 77565) SGN-E253525+ PGS (74579 74667,74905 75013,75122 75189,75410 75597) SGN-E260139+ PGS (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79062) SGN-E262506+ PGS (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78170) SGN-E256824+ PGS (75469 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78168) SGN-E254829+ PGS (75471 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78108) SGN-E261937+ PGS (75490 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78185) SGN-E264427+ PGS (75501 75621,75707 75770,77504 77576,77657 77775) SGN-E258938+ PGS (75503 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78126) SGN-E271260+ PGS (75515 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78198) SGN-E233760+ PGS (75734 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79009) SGN-E253031+ PGS (77666 77777,77889 77976,78085 78210,78797 78906,78993 79096) SGN-E238286+ PGS (77666 77777,77889 77976,78085 78210,78797 78881) SGN-E233727+ PGS (78839 78906,78993 79154) SGN-E239955+ PGS (79026 79496) SGN-E278593- PGS (79074 79479) SGN-E259864- 3-phase translation of AGS-1 (+strand): . . . . . . 74578 GAAGAATCGAAACAGAGCCAAAATCTCAACTAAATGGATTGCTATTCTTTGTATTTTTAG E E S K Q S Q N L N - M D C Y S L Y F - K N R N R A K I S T K W I A I L C I F S R I E T E P K S Q L N G L L F F V F L . . . : . . . 74638 CTTTGCTCTTGGTATGCTTTTCTCTAACAG : AGTTTGGACTCCTCCAGAATCAGATGGAAG L C S W Y A F L - Q : S L D S S R I R W K F A L G M L F S N R : V W T P P E S D G R A L L L V C F S L T : E F G L L Q N Q M E . . . . . . 74935 GAACATATTTGGAAGGCGCCAGACGCAAGAAAGAGTCTTGCCTTCTGTTTCTGATGATTG E H I W K A P D A R K S L A F C F - - L N I F G R R Q T Q E R V L P S V S D D C G T Y L E G A R R K K E S C L L F L M I . . : . . . . 74995 TGAAACCAAAAACAGTCAG : AAGGAGGAGATGATGGGAGAGTTTAACAAAGCACAAGTAGC - N Q K Q S : E G G D D G R V - Q S T S S E T K N S Q : K E E M M G E F N K A Q V A V K P K T V R : R R R - W E S L T K H K - . . . : . . . 75163 TATCCAGTGAGTTTCAGAGTTTTTCAT : ATCGTTGGATGATTCAATTGCTAAGATTCAAAG Y P V S F R V F H : I V G - F N C - D S K I Q - V S E F F I : S L D D S I A K I Q S L S S E F Q S F S : Y R W M I Q L L R F K . . . . . . 75443 TGAGCTGCCTTCAACTAAGGATCCTCTAATTCCACGGATAACTGAAGAGGTTCCTTCCTT - A A F N - G S S N S T D N - R G S F L E L P S T K D P L I P R I T E E V P S L V S C L Q L R I L - F H G - L K R F L P . . . . . . 75503 GAGGACAGATTCTGGAGGAAGTGGAACGAGAAAGAAGACATTTATGGTTATTGGGATAAA E D R F W R K W N E K E D I Y G Y W D K R T D S G G S G T R K K T F M V I G I N - G Q I L E E V E R E R R H L W L L G - . . . . . . : 75563 CACGGCCTTCAGTAGTAGAAAAAGGCGCGATTCTATTAGAGAGACTTGGATGCCTCAAG : G H G L Q - - K K A R F Y - R D L D A S R : T A F S S R K R R D S I R E T W M P Q : G T R P S V V E K G A I L L E R L G C L K : . . . . . . 75708 TACAAAGCTACATAGATTAGAGCAAGAAAAGGGGATAATTGTGCGTTTCATGATAGGCCA Y K A T - I R A R K G D N C A F H D R P T K L H R L E Q E K G I I V R F M I G H V Q S Y I D - S K K R G - L C V S - - A . : . . . . . 75768 CAG : CGCGATATCGAATAGCATTTTAGATCGAGCCATTGATAGTGAAGATGCTCAGCATAA Q : R D I E - H F R S S H - - - R C S A - S : A I S N S I L D R A I D S E D A Q H N T : A R Y R I A F - I E P L I V K M L S I . . : . . . . 77561 TGACATTCTTCGACTT : GATCACGTAGAAGGCTATCATGAGTTAACTGCAAAAACGAAAGC - H S S T : - S R R R L S - V N C K N E S D I L R L : D H V E G Y H E L T A K T K A M T F F D L : I T - K A I M S - L Q K R K . . . . . . 77701 TTTCTTCTCCCTTGCAGTTGCGAAATGGGATGCTGAGTTCTATGTGAAGATTGATGATGA F L L P C S C E M G C - V L C E D - - - F F S L A V A K W D A E F Y V K I D D D L S S P L Q L R N G M L S S M - R L M M . . : . . . . 77761 TGTTCATGTCAATTTAG : GTACACTAGCTGCAACTCTTGCCAGGCACAGGTTGAAACCCAG C S C Q F R : Y T S C N S C Q A Q V E T Q V H V N L : G T L A A T L A R H R L K P R M F M S I - : V H - L Q L L P G T G - N P . . . . . : . 77932 GGTGTATATAGGATGCATGAAATCTGGACCAGTTCTTTATCAAAA : GAGTGTTAAGTACCA G V Y R M H E I W T S S L S K : E C - V P V Y I G C M K S G P V L Y Q K : S V K Y H G C I - D A - N L D Q F F I K : R V L S T . . . . . . 78100 TGAACCTGAGTTCTGGAAATTTGGGGAGACGGGGAATAAGTACTTCCGACATGCAACTGG - T - V L E I W G D G E - V L P T C N W E P E F W K F G E T G N K Y F R H A T G M N L S S G N L G R R G I S T S D M Q L . . . . . . : 78160 ACAGATATACGCCATCTCGAAAGAGTTGGCAACATATGTTGCCAACAACAG : ACCTATTCT T D I R H L E R V G N I C C Q Q Q : T Y S Q I Y A I S K E L A T Y V A N N R : P I L D R Y T P S R K S W Q H M L P T T : D L F . . . . . . 78806 GCATAAGTATGCTAATGAAGATGTGTCACTCGGGGCATGGTTGATTGGTCTAGAAGTTGA A - V C - - R C V T R G M V D W S R S - H K Y A N E D V S L G A W L I G L E V E C I S M L M K M C H S G H G - L V - K L . . . . . : . 78866 GCATATTGATGATCGGAACCTGTGTTGTGGAACTCCGCCTG : AATGCGAATGGAAAGCACA A Y - - S E P V L W N S A - : M R M E S T H I D D R N L C C G T P P : E C E W K A Q S I L M I G T C V V E L R L : N A N G K H . . . . . . 79012 AGCAGGTAATGTTTGTGTGGCATCATTTGATTGGAGCTGCAGTGGAATCTGCAAATCAGT S R - C L C G I I - L E L Q W N L Q I S A G N V C V A S F D W S C S G I C K S V K Q V M F V W H H L I G A A V E S A N Q . . . . . . 79072 CGAAAGAATCAAGCAAGTACACGCTAAATGCAGCGAAAGTCCTGCTACTCTATGGGGTGC R K N Q A S T R - M Q R K S C Y S M G C E R I K Q V H A K C S E S P A T L W G A S K E S S K Y T L N A A K V L L L Y G V . . . . . . 79132 TCTTATTTAGTCATCTTTTTCATCATCAGAAGCTATTCTTCAAACATGATACCTATCCTC S Y L V I F F I I R S Y S S N M I P I L L I - S S F S S S E A I L Q T - Y L S S L L F S H L F H H Q K L F F K H D T Y P . . . . . . 79192 TCAACTTGAAGAGAAGTAAATTGTTGATCATTTACGAGCCGGAAGAGATCACCCAATGCT S T - R E V N C - S F T S R K R S P N A Q L E E K - I V D H L R A G R D H P M L L N L K R S K L L I I Y E P E E I T Q C . . . . . . 79252 ACAAAAGATAGTTGCAGATCTTGATGGAGAACTTAGCTCTGTTGTTTATACATATCGCTA T K D S C R S - W R T - L C C L Y I S L Q K I V A D L D G E L S S V V Y T Y R - Y K R - L Q I L M E N L A L L F I H I A . . . . . . 79312 GCTAGAAACTGTTGACAAAATGAGAGCATAAATAGTAGGAAGAGTGTAGTCTTCATTAAG A R N C - Q N E S I N S R K S V V F I K L E T V D K M R A - I V G R V - S S L S S - K L L T K - E H K - - E E C S L H - . . . . . . 79372 TATAATTCCATCCACACAGATTAGAGTCAGTTGGATGTTAGAGCTATTAGATTTGTACTT Y N S I H T D - S Q L D V R A I R F V L I I P S T Q I R V S W M L E L L D L Y F V - F H P H R L E S V G C - S Y - I C T . . . . . . 79432 CCACAGTATACTGTGGTAAATATTTTTGCCTAATAAGAAATTTTCCTCATTTCCACAGGC P Q Y T V V N I F A - - E I F L I S T G H S I L W - I F L P N K K F S S F P Q A S T V Y C G K Y F C L I R N F P H F H R . 79492 TTTTC F F L F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-16_AGS-1_PPS_1 (75173 75189,75410 75621,75707 75770,77504 77576,77657 77777,77889 77976,78085 78210,78797 78906,78993 79141) (frame '2'; 957 bp, 319 residues) 1 VSEFFISLDD SIAKIQSELP STKDPLIPRI TEEVPSLRTD SGGSGTRKKT FMVIGINTAF 61 SSRKRRDSIR ETWMPQGTKL HRLEQEKGII VRFMIGHSAI SNSILDRAID SEDAQHNDIL 121 RLDHVEGYHE LTAKTKAFFS LAVAKWDAEF YVKIDDDVHV NLGTLAATLA RHRLKPRVYI 181 GCMKSGPVLY QKSVKYHEPE FWKFGETGNK YFRHATGQIY AISKELATYV ANNRPILHKY 241 ANEDVSLGAW LIGLEVEHID DRNLCCGTPP ECEWKAQAGN VCVASFDWSC SGICKSVERI 301 KQVHAKCSES PATLWGALI- >C08HBa0037O11.1+_PGL-16_AGS-1_PPS_2 (74579 74667,74905 75013,75122 75172) (frame '2'; 246 bp, 82 residues) 1 KNRNRAKIST KWIAILCIFS FALGMLFSNR VWTPPESDGR NIFGRRQTQE RVLPSVSDDC 61 ETKNSQKEEM MGEFNKAQVA IQ- AGS-2 (74579 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77576) SCR (e 1.000 d 0.815 a 0.999,e 1.000 d 0.959 a 0.997,e 1.000 d 0.994 a 0.925,e 1.000 d 0.995 a 0.999,e 1.000 d 0.983 a 0.960,e 1.000) Exon 1 74579 74667 ( 89 n); score: 1.000 Intron 1 74668 74904 ( 237 n); Pd: 0.815 Pa: 0.999 Exon 2 74905 75013 ( 109 n); score: 1.000 Intron 2 75014 75121 ( 108 n); Pd: 0.959 Pa: 0.997 Exon 3 75122 75168 ( 47 n); score: 1.000 Intron 3 75169 75409 ( 241 n); Pd: 0.994 Pa: 0.925 Exon 4 75410 75621 ( 212 n); score: 1.000 Intron 4 75622 75706 ( 85 n); Pd: 0.995 Pa: 0.999 Exon 5 75707 75770 ( 64 n); score: 1.000 Intron 5 75771 77503 (1733 n); Pd: 0.983 Pa: 0.960 Exon 6 77504 77576 ( 73 n); score: 1.000 PGS (74579 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77576) SGN-E260002+ PGS (74579 74667,74905 75013,75122 75168,75410 75621,75707 75762) SGN-E251837+ PGS (74579 74667,74905 75013,75122 75168,75410 75621,75707 75734) SGN-E259078+ PGS (74580 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77571) SGN-E206245+ PGS (74630 74667,74905 75013,75122 75168,75410 75621,75707 75770) SGN-E289541+ PGS (74907 75013,75122 75168,75410 75621,75707 75770,77504 77570) SGN-E278676+ 3-phase translation of AGS-2 (+strand): . . . . . . 74579 AAGAATCGAAACAGAGCCAAAATCTCAACTAAATGGATTGCTATTCTTTGTATTTTTAGC K N R N R A K I S T K W I A I L C I F S R I E T E P K S Q L N G L L F F V F L A E S K Q S Q N L N - M D C Y S L Y F - . . . : . . . 74639 TTTGCTCTTGGTATGCTTTTCTCTAACAG : AGTTTGGACTCCTCCAGAATCAGATGGAAGG F A L G M L F S N R : V W T P P E S D G R L L L V C F S L T : E F G L L Q N Q M E G L C S W Y A F L - Q : S L D S S R I R W K . . . . . . 74936 AACATATTTGGAAGGCGCCAGACGCAAGAAAGAGTCTTGCCTTCTGTTTCTGATGATTGT N I F G R R Q T Q E R V L P S V S D D C T Y L E G A R R K K E S C L L F L M I V E H I W K A P D A R K S L A F C F - - L . . : . . . . 74996 GAAACCAAAAACAGTCAG : AAGGAGGAGATGATGGGAGAGTTTAACAAAGCACAAGTAGCT E T K N S Q : K E E M M G E F N K A Q V A K P K T V R : R R R - W E S L T K H K - L - N Q K Q S : E G G D D G R V - Q S T S S . : . . . . . 75164 ATCCA : ATCGTTGGATGATTCAATTGCTAAGATTCAAAGTGAGCTGCCTTCAACTAAGGAT I Q : S L D D S I A K I Q S E L P S T K D S : N R W M I Q L L R F K V S C L Q L R I Y P : I V G - F N C - D S K - A A F N - G . . . . . . 75465 CCTCTAATTCCACGGATAACTGAAGAGGTTCCTTCCTTGAGGACAGATTCTGGAGGAAGT P L I P R I T E E V P S L R T D S G G S L - F H G - L K R F L P - G Q I L E E V S S N S T D N - R G S F L E D R F W R K . . . . . . 75525 GGAACGAGAAAGAAGACATTTATGGTTATTGGGATAAACACGGCCTTCAGTAGTAGAAAA G T R K K T F M V I G I N T A F S S R K E R E R R H L W L L G - T R P S V V E K W N E K E D I Y G Y W D K H G L Q - - K . . . . : . . 75585 AGGCGCGATTCTATTAGAGAGACTTGGATGCCTCAAG : GTACAAAGCTACATAGATTAGAG R R D S I R E T W M P Q : G T K L H R L E G A I L L E R L G C L K : V Q S Y I D - S K A R F Y - R D L D A S R : Y K A T - I R . . . . . : . 75730 CAAGAAAAGGGGATAATTGTGCGTTTCATGATAGGCCACAG : CGCGATATCGAATAGCATT Q E K G I I V R F M I G H S : A I S N S I K K R G - L C V S - - A T : A R Y R I A F A R K G D N C A F H D R P Q : R D I E - H . . . . . . 77523 TTAGATCGAGCCATTGATAGTGAAGATGCTCAGCATAATGACATTCTTCGACTT L D R A I D S E D A Q H N D I L R L - I E P L I V K M L S I M T F F D F R S S H - - - R C S A - - H S S T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-16_AGS-2_PPS_1 (74579 74667,74905 75013,75122 75168,75410 75621,75707 75770,77504 77576) (frame '1'; 594 bp, 198 residues) 1 KNRNRAKIST KWIAILCIFS FALGMLFSNR VWTPPESDGR NIFGRRQTQE RVLPSVSDDC 61 ETKNSQKEEM MGEFNKAQVA IQSLDDSIAK IQSELPSTKD PLIPRITEEV PSLRTDSGGS 121 GTRKKTFMVI GINTAFSSRK RRDSIRETWM PQGTKLHRLE QEKGIIVRFM IGHSAISNSI 181 LDRAIDSEDA QHNDILRL PGL 17 (+ strand): 85067 85554 AGS-1 (85067 85554) SCR (e 0.784) Exon 1 85067 85554 ( 488 n); score: 0.784 PGS (85067 85554) SGN-E539593- 3-phase translation of AGS-1 (+strand): . . . . . . 85067 TAAACATGATTTCAAATTTTAACTTTAATATTAAATTTTCATAGTGCACAAGTAGACACT - T - F Q I L T L I L N F H S A Q V D T K H D F K F - L - Y - I F I V H K - T L N M I S N F N F N I K F S - C T S R H . . . . . . 85127 TTAATTATCCAATTTTTTAATAAATGAACATGCGAGCCTTACCTAGCAAAACGCGTGATG L I I Q F F N K - T C E P Y L A K R V M - L S N F L I N E H A S L T - Q N A - C F N Y P I F - - M N M R A L P S K T R D . . . . . . 85187 TGCGCATATTTTGCGCGAGTTAGGATTAAATTTTGATGCCCACAATAGTAAAAAAAAAAT C A Y F A R V R I K F - C P Q - - K K N A H I L R E L G L N F D A H N S K K K I V R I F C A S - D - I L M P T I V K K K . . . . . . 85247 ACTGAAATGACAACTCTACCCTTGATGAATCCGTTTTATATATTGTACATTTTTATATTT T E M T T L P L M N P F Y I L Y I F I F L K - Q L Y P - - I R F I Y C T F L Y F Y - N D N S T L D E S V L Y I V H F Y I . . . . . . 85307 TCAAATCAAAATCTCATTTTATTTTTTTTAATTCTGAAATGGACGTGTAAAATATTTAAT S N Q N L I L F F L I L K W T C K I F N Q I K I S F Y F F - F - N G R V K Y L I F K S K S H F I F F N S E M D V - N I - . . . . . . 85367 TAGTTGGCATCCATTGACTTACTAATATACGTGGGAGCATTTGCATTTCATTCTCTTTGG - L A S I D L L I Y V G A F A F H S L W S W H P L T Y - Y T W E H L H F I L F G L V G I H - L T N I R G S I C I S F S L . . . . . . 85427 CTCCAAAAGTGATGTGTTTATTTATTTAAAAGTAGGATAGTTAAAGTGCATGTTTGTACA L Q K - C V Y L F K S R I V K V H V C T S K S D V F I Y L K V G - L K C M F V H A P K V M C L F I - K - D S - S A C L Y . . . . . . 85487 CTATAAAAGTTGGAGGTTAAAGTTAAAATTTGAAGTCAAATTTGAAATCCAATATATGTA L - K L E V K V K I - S Q I - N P I Y V Y K S W R L K L K F E V K F E I Q Y M - T I K V G G - S - N L K S N L K S N I C . 85547 ATATGTCT I C Y V N M S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 85554 AGACATATTACATATATTGGATTTCAAATTTGACTTCAAATTTTAACTTTAACCTCCAAC R H I T Y I G F Q I - L Q I L T L T S N D I L H I L D F K F D F K F - L - P P T T Y Y I Y W I S N L T S N F N F N L Q . . . . . . 85494 TTTTATAGTGTACAAACATGCACTTTAACTATCCTACTTTTAAATAAATAAACACATCAC F Y S V Q T C T L T I L L L N K - T H H F I V Y K H A L - L S Y F - I N K H I T L L - C T N M H F N Y P T F K - I N T S . . . . . . 85434 TTTTGGAGCCAAAGAGAATGAAATGCAAATGCTCCCACGTATATTAGTAAGTCAATGGAT F W S Q R E - N A N A P T Y I S K S M D F G A K E N E M Q M L P R I L V S Q W M L L E P K R M K C K C S H V Y - - V N G . . . . . . 85374 GCCAACTAATTAAATATTTTACACGTCCATTTCAGAATTAAAAAAAATAAAATGAGATTT A N - L N I L H V H F R I K K N K M R F P T N - I F Y T S I S E L K K I K - D F C Q L I K Y F T R P F Q N - K K - N E I . . . . . . 85314 TGATTTGAAAATATAAAAATGTACAATATATAAAACGGATTCATCAAGGGTAGAGTTGTC - F E N I K M Y N I - N G F I K G R V V D L K I - K C T I Y K T D S S R V E L S L I - K Y K N V Q Y I K R I H Q G - S C . . . . . . 85254 ATTTCAGTATTTTTTTTTTACTATTGTGGGCATCAAAATTTAATCCTAACTCGCGCAAAA I S V F F F Y Y C G H Q N L I L T R A K F Q Y F F F T I V G I K I - S - L A Q N H F S I F F L L L W A S K F N P N S R K . . . . . . 85194 TATGCGCACATCACGCGTTTTGCTAGGTAAGGCTCGCATGTTCATTTATTAAAAAATTGG Y A H I T R F A R - G S H V H L L K N W M R T S R V L L G K A R M F I Y - K I G I C A H H A F C - V R L A C S F I K K L . . . . . . 85134 ATAATTAAAGTGTCTACTTGTGCACTATGAAAATTTAATATTAAAGTTAAAATTTGAAAT I I K V S T C A L - K F N I K V K I - N - L K C L L V H Y E N L I L K L K F E I D N - S V Y L C T M K I - Y - S - N L K . 85074 CATGTTTA H V M F S C L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 18 (- strand): 93445 87205 AGS-1 (93445 93399,89905 89854,89601 89554,89192 89171,88861 88823,87409 87205) SCR (e 0.702 d 0.000 a 0.000,e 0.673 d 0.000 a 0.000,e 0.646 d 0.000 a 0.604,e 0.636 d 0.560 a 0.000,e 0.679 d 0.000 a 0.152,e 0.917) Exon 1 93445 93399 ( 47 n); score: 0.702 Intron 1 93398 89906 (3493 n); Pd: 0.000 Pa: 0.000 Exon 2 89905 89854 ( 52 n); score: 0.673 Intron 2 89853 89602 ( 252 n); Pd: 0.000 Pa: 0.000 Exon 3 89601 89554 ( 48 n); score: 0.646 Intron 3 89553 89193 ( 361 n); Pd: 0.000 Pa: 0.604 Exon 4 89192 89171 ( 22 n); score: 0.636 Intron 4 89170 88862 ( 309 n); Pd: 0.560 Pa: 0.000 Exon 5 88861 88823 ( 39 n); score: 0.679 Intron 5 88822 87410 (1413 n); Pd: 0.000 Pa: 0.152 Exon 6 87409 87205 ( 205 n); score: 0.917 PGS (93445 93399,89905 89854,89601 89554,89192 89171,88861 88823,87409 87205) SGN-E301078- 3-phase translation of AGS-1 (-strand): . . . . . : . 93445 CTATCATATGTATATAGAAATTCAATACTTTTGCTTGTTCTATTCTT : ACTATAGTTTGAT L S Y V Y R N S I L L L V L F L : L - F D Y H M Y I E I Q Y F C L F Y S : Y Y S L I I I C I - K F N T F A C S I L : T I V - . . . . : . . 89892 AATAACAATTCTTAGCTACATGTTATAGGGAGGAGAAAG : ATAATTGTATATTATACATAT N N N S - L H V I G R R K : I I V Y Y T Y I T I L S Y M L - G G E R : - L Y I I H I - - Q F L A T C Y R E E K : D N C I L Y I . . . : . . : . 89580 ACATTTGTACATATAGCAAGCGAGATT : TTTAACTTTAACTTTCTACCTG : TGTAGTTTTCA T F V H I A S E I : F N F N F L P : V - F S H L Y I - Q A R F : L T L T F Y L : C S F Q Y I C T Y S K R D : F - L - L S T C : V V F . . . : . . . 88850 AATATGTAAAATCATAATTTTGATTATT : AAAAGTCTATGTTGTGCGGAATTTGAGATAAT N M - N H N F D Y : - K S M L C G I - D N I C K I I I L I I : K S L C C A E F E I I K Y V K S - F - L L : K V Y V V R N L R - . . . . . . 87377 ACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTG T R K Y K R E K Q D N R F T W F T N K L R E N I N A K N K T T D L R G S P I N W Y E K I - T R K T R Q Q I Y V V H Q - I . . . . . . 87317 GCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACA A T S T G R E G A V L L W R G K N R I T L R P R E E R E Q F Y Y G E A K T E L Q G Y V H G K R G S S F I M E R Q K Q N Y . . . . . . 87257 GAATAGGGTTTGACATAGCGTCTATATATAGTGCTAAGCTACGCCCTAAAAGG E - G L T - R L Y I V L S Y A L K N R V - H S V Y I - C - A T P - K R I G F D I A S I Y S A K L R P K R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-18_AGS-1_PPS_1 (89564 89554,89192 89171,88861 88823,87409 87245) (frame '2'; 234 bp, 78 residues) 1 QARFLTLTFY LCSFQICKII ILIIKSLCCA EFEIIRENIN AKNKTTDLRG SPINWLRPRE 61 EREQFYYGEA KTELQNRV- AGS-2 (88677 88642,88068 87996,87936 87884,87793 87778,87409 87205) SCR (e 0.833 d 0.000 a 0.630,e 0.616 d 0.000 a 0.153,e 0.623 d 0.000 a 0.000,e 0.750 d 0.683 a 0.152,e 0.937) Exon 1 88677 88642 ( 36 n); score: 0.833 Intron 1 88641 88069 ( 573 n); Pd: 0.000 Pa: 0.630 Exon 2 88068 87996 ( 73 n); score: 0.616 Intron 2 87995 87937 ( 59 n); Pd: 0.000 Pa: 0.153 Exon 3 87936 87884 ( 53 n); score: 0.623 Intron 3 87883 87794 ( 90 n); Pd: 0.000 Pa: 0.000 Exon 4 87793 87778 ( 16 n); score: 0.750 Intron 4 87777 87410 ( 368 n); Pd: 0.683 Pa: 0.152 Exon 5 87409 87205 ( 205 n); score: 0.937 PGS (88677 88642,88068 87996,87936 87884,87793 87778,87409 87205) SGN-E301194- 3-phase translation of AGS-2 (-strand): . . . . : . . 88677 AAATATTTATTACTAATATAATAAAAATAATAATTT : TACTTTGACGTGATTTCAGATAAA K Y L L L I - - K - - F : Y F D V I S D K N I Y Y - Y N K N N N F : T L T - F Q I K I F I T N I I K I I I : L L - R D F R - . . . . . : . 88044 GTAAAAAAAATTTTAGTATCAAATTTTATAGAGATGAAGTAAAAAAAAA : TTTATATGGTG V K K I L V S N F I E M K - K K : I Y M V - K K F - Y Q I L - R - S K K K : F I W W S K K N F S I K F Y R D E V K K N : L Y G . . . . . : . : 87925 GAAAACGTAAAGAATTGCAAGTATGGATTATGGAACAAGATG : AGAGTGTATGAACATC : AA E N V K N C K Y G L W N K M : R V Y E H : Q K T - R I A S M D Y G T R - : E C M N I : K G K R K E L Q V W I M E Q D : E S V - T S : . . . . . . 87407 AAGTCTATGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGAC K S M L C G I - D N T R K Y K R E K Q D S L C C A E F E I I R E N I N A K N K T K V Y V V R N L R - Y E K I - T R K T R . . . . . . 87347 AACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTT N R F T W F T N K L A T S T G R E G A V T D L R G S P I N W L R P R E E R E Q F Q Q I Y V V H Q - I G Y V H G K R G S S . . . . . . 87287 TTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTGACATAGCGTCTATATATA L L W R G K N R I T E - G L T - R L Y I Y Y G E A K T E L Q N R V - H S V Y I - F I M E R Q K Q N Y R I G F D I A S I Y . . . 87227 GTGCTAAGCTACGCCCTAAAAGG V L S Y A L K C - A T P - K S A K L R P K R Maximal non-overlapping open reading frames (>= 64 codons): none PGL 19 (+ strand): 90845 93874 AGS-1 (90845 90930,91055 91178,93520 93874) SCR (e 1.000 d 0.989 a 0.995,e 1.000 d 0.994 a 0.997,e 0.993) Exon 1 90845 90930 ( 86 n); score: 1.000 Intron 1 90931 91054 ( 124 n); Pd: 0.989 Pa: 0.995 Exon 2 91055 91178 ( 124 n); score: 1.000 Intron 2 91179 93519 (2341 n); Pd: 0.994 Pa: 0.997 Exon 3 93520 93874 ( 355 n); score: 0.993 PGS (90845 90930,91055 91178,93520 93874) SGN-E548516+ PGS (90845 90930,91055 91178,93520 93803) SGN-E296188+ PGS (91116 91178,93520 93761) SGN-E309417+ 3-phase translation of AGS-1 (+strand): . . . . . . 90845 GCTAGTGACAGGTTCAACATCAACTCCCAGCTTGAGCACTTACAAGCTAAATATGTTGGA A S D R F N I N S Q L E H L Q A K Y V G L V T G S T S T P S L S T Y K L N M L E - - Q V Q H Q L P A - A L T S - I C W . . . : . . . 90905 ACAGGACATGCCGATTTGACTAGATT : TGAGTGGGCGGTAAACATTCAGCGCGATAGCTAT T G H A D L T R F : E W A V N I Q R D S Y Q D M P I - L D : L S G R - T F S A I A M N R T C R F D - I : - V G G K H S A R - L . . . . . . 91089 GCGTCCTATGTTGGGCACTATCCAATGTTGGCGTATTTTGCCATTGCAGAAAATGAATCA A S Y V G H Y P M L A Y F A I A E N E S R P M L G T I Q C W R I L P L Q K M N Q C V L C W A L S N V G V F C H C R K - I . . . : . . . 91149 ATTGGAAGAGAACGTTACAATTTTATGCAG : AAAATGCTTTTGCCGTGTGGCCTTCCACCT I G R E R Y N F M Q : K M L L P C G L P P L E E N V T I L C R : K C F C R V A F H L N W K R T L Q F Y A : E N A F A V W P S T . . . . . . 93550 GAAAGAGAAGATGATTAAGAGTTGCAATAAATAAAGGCAAGATGCAAGGATCATAAACCA E R E D D - E L Q - I K A R C K D H K P K E K M I K S C N K - R Q D A R I I N H - K R R - L R V A I N K G K M Q G S - T . . . . . . 93610 TAGGTTTTCGTTATCTCCAGCCTCCTTACATTCTTTTCATATCATGTCAACCCTACATTG - V F V I S S L L T F F S Y H V N P T L R F S L S P A S L H S F H I M S T L H - I G F R Y L Q P P Y I L F I S C Q P Y I . . . . . . 93670 AAGTGTAAATGGTCAGTTTGGCAGGCCATTTATGGATACTGATTAAACCTTAGGAATTAT K C K W S V W Q A I Y G Y - L N L R N Y S V N G Q F G R P F M D T D - T L G I I E V - M V S L A G H L W I L I K P - E L . . . . . . 93730 AAATCGTTTACATTTGATCACTCTATCTAAAACCTCTCTTTGTGATGGGTCGATTTCAAT K S F T F D H S I - N L S L - W V D F N N R L H L I T L S K T S L C D G S I S I - I V Y I - S L Y L K P L F V M G R F Q . . . . . . 93790 TCATCATTCTTTTTTGTTTTCTTGTATGTGTATCAAGAGCACATATAATAATTGATCAAT S S F F F V F L Y V Y Q E H I - - L I N H H S F L F S C M C I K S T Y N N - S M F I I L F C F L V C V S R A H I I I D Q . . . 93850 GGGAAAGGTTAGCATTATTTGATGT G K G - H Y L M G K V S I I - C W E R L A L F D Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-19_AGS-1_PPS_1 (90845 90930,91055 91178,93520 93567) (frame '1'; 255 bp, 85 residues) 1 ASDRFNINSQ LEHLQAKYVG TGHADLTRFE WAVNIQRDSY ASYVGHYPML AYFAIAENES 61 IGRERYNFMQ KMLLPCGLPP EREDD- PGL 20 (+ strand): 99659 101185 AGS-1 (99659 101185) SCR (e 1.000) Exon 1 99659 101185 (1527 n); score: 1.000 PGS (99659 100198) SGN-E312145+ PGS (100168 100609) SGN-E248213+ PGS (100440 101185) SGN-E348273+ 3-phase translation of AGS-1 (+strand): . . . . . . 99659 TCTGATCCTGAATCTGACCTCCCTGGGTACTTCGGTGTGCTCAAGAGGCTTAAAGAGGCG S D P E S D L P G Y F G V L K R L K E A L I L N L T S L G T S V C S R G L K R R - S - I - P P W V L R C A Q E A - R G . . . . . . 99719 TTAAAATTTTTGGGGGAGAATTGTGACATGGCGATTCAGTGGTTGGCGGACATTGTGGAG L K F L G E N C D M A I Q W L A D I V E - N F W G R I V T W R F S G W R T L W S V K I F G G E L - H G D S V V G G H C G . . . . . . 99779 TATCTAGAGGATCATAATGTTGCTGATGACAAGTTCATTTCTAGTTTAAAGGAGGCGTTG Y L E D H N V A D D K F I S S L K E A L I - R I I M L L M T S S F L V - R R R - V S R G S - C C - - Q V H F - F K G G V . . . . . . 99839 ACTACTCTGAAGGAGTTGCATCGTGGGGAGGATTGGAGTTGCCTTGATGGAGGACTTCTT T T L K E L H R G E D W S C L D G G L L L L - R S C I V G R I G V A L M E D F L D Y S E G V A S W G G L E L P - W R T S . . . . . . 99899 GAGGCTGCGTTGGATAGATTGGAAAATGAGTTTAGGCGGTTACTGACTGAAAATAGTGTA E A A L D R L E N E F R R L L T E N S V R L R W I D W K M S L G G Y - L K I V Y - G C V G - I G K - V - A V T D - K - C . . . . . . 99959 CCGTTGCCTATGTCTACTCCGGACTTACCAGGTGAACAGGCCTGCATAGCTCCATCCCTT P L P M S T P D L P G E Q A C I A P S L R C L C L L R T Y Q V N R P A - L H P F T V A Y V Y S G L T R - T G L H S S I P . . . . . . 100019 TTGCCTGTGGCTGTTATAAAGAAGCTACAGAGTATACTTGGCAGATTGGTTGCCAATAAC L P V A V I K K L Q S I L G R L V A N N C L W L L - R S Y R V Y L A D W L P I T F A C G C Y K E A T E Y T W Q I G C Q - . . . . . . 100079 AGGCTTGAAAAGTGTGTGTCAATCTATGTTGAGGTACGGAGTTCTAATGTCAGGGAAAGT R L E K C V S I Y V E V R S S N V R E S G L K S V C Q S M L R Y G V L M S G K V Q A - K V C V N L C - G T E F - C Q G K . . . . . . 100139 TTGCAGGCACTTAATTTGGATTACCTTGAGATTTCAGTCTCCGAGTTCAATGACGTGCAG L Q A L N L D Y L E I S V S E F N D V Q C R H L I W I T L R F Q S P S S M T C R F A G T - F G L P - D F S L R V Q - R A . . . . . . 100199 AGCATAGAGGGCCACATTGCTAATTGGGGTAAGCATCTAGAGTTTGCTGTGAAACATCTT S I E G H I A N W G K H L E F A V K H L A - R A T L L I G V S I - S L L - N I F E H R G P H C - L G - A S R V C C E T S . . . . . . 100259 TTAGAGGCTGAGTATAAACTCTGTAATGATGTCTTTGATAGATTCGGATTGGATGTGTGG L E A E Y K L C N D V F D R F G L D V W - R L S I N S V M M S L I D S D W M C G F R G - V - T L - - C L - - I R I G C V . . . . . . 100319 ATGGGTTGTTTCGCTAAAATAGCTTCCCAGGCAAGTATTCTTGCATTCATTCAGTTTGGA M G C F A K I A S Q A S I L A F I Q F G W V V S L K - L P R Q V F L H S F S L E D G L F R - N S F P G K Y S C I H S V W . . . . . . 100379 AAAACTGTTACGGAGAGTAAGAAGGATCCAATTAAGATGTTAAAACTGTTAGATATCTTT K T V T E S K K D P I K M L K L L D I F K L L R R V R R I Q L R C - N C - I S L K N C Y G E - E G S N - D V K T V R Y L . . . . . . 100439 GCATCTTTAAACAAACTGAGATTGGATTTCAATCGGCTCTTCGGTGGAGCTGCATGTGCT A S L N K L R L D F N R L F G G A A C A H L - T N - D W I S I G S S V E L H V L C I F K Q T E I G F Q S A L R W S C M C . . . . . . 100499 GAAATCCAGAGGTTGACGAGGGATCTCATCAAGAGGGTGATTGATGGGGCTAGTGAACTC E I Q R L T R D L I K R V I D G A S E L K S R G - R G I S S R G - L M G L V N S - N P E V D E G S H Q E G D - W G - - T . . . . . . 100559 TTCTGGGAACTTCAGGTTCAAGTTGAATTGCAGAGGCAAATACCACCACCTCCAGATGGT F W E L Q V Q V E L Q R Q I P P P P D G S G N F R F K L N C R G K Y H H L Q M V L L G T S G S S - I A E A N T T T S R W . . . . . . 100619 GGTGTCCCGAAACTTATCATCTTTATCACCGACTACTGCAATAAGCTGCTTGGAGATGAT G V P K L I I F I T D Y C N K L L G D D V S R N L S S L S P T T A I S C L E M I W C P E T Y H L Y H R L L Q - A A W R - . . . . . . 100679 TATAAGCCAATGCTCACCCAAGTTTTGGTAATCGAAAGAAGTTGGAAGCGTGAAATATTT Y K P M L T Q V L V I E R S W K R E I F I S Q C S P K F W - S K E V G S V K Y F L - A N A H P S F G N R K K L E A - N I . . . . . . 100739 CAAGAGCGGCTTCTCTTTGATGAGCTACTGAATATTATGAGAGCTGTTCAGCTTAATCTA Q E R L L F D E L L N I M R A V Q L N L K S G F S L M S Y - I L - E L F S L I - S R A A S L - - A T E Y Y E S C S A - S . . . . . . 100799 GAGACATGGTCCAAGGGATACAAAGATGATACCTTGTCATACGTGTTCTTGATGAACAAT E T W S K G Y K D D T L S Y V F L M N N R H G P R D T K M I P C H T C S - - T I R D M V Q G I Q R - Y L V I R V L D E Q . . . . . . 100859 CATTGGCACCTTTACAAGGATCTGAAAGGCACAAAGCTTGGTATTCTTTTGGGTGATTCT H W H L Y K D L K G T K L G I L L G D S I G T F T R I - K A Q S L V F F W V I L S L A P L Q G S E R H K A W Y S F G - F . . . . . . 100919 TGGTTGAGAGAACATGAACAGTACAAAGAGTACTATTCTGCCGTTTTCTTGAGAGAGAGC W L R E H E Q Y K E Y Y S A V F L R E S G - E N M N S T K S T I L P F S - E R A L V E R T - T V Q R V L F C R F L E R E . . . . . . 100979 TGGGCGAAGCTTCCAGCTCTATTAAGCCGGGAAGGTCTCATTCTCTTCTCTGGTGGGCGT W A K L P A L L S R E G L I L F S G G R G R S F Q L Y - A G K V S F S S L V G V L G E A S S S I K P G R S H S L L W W A . . . . . . 101039 GCCACTGCTCGCGATCTTGTTAAGAAACGATTAAAAGCTTTTAATGAAGCTTTTGATGAC A T A R D L V K K R L K A F N E A F D D P L L A I L L R N D - K L L M K L L M T C H C S R S C - E T I K S F - - S F - - . . . . . . 101099 ATGTATAAGAAGCAGTCTAATTGGATCATGCTTGACAAAGAGCTAAGAGAAAAGACATGC M Y K K Q S N W I M L D K E L R E K T C C I R S S L I G S C L T K S - E K R H A H V - E A V - L D H A - Q R A K R K D M . . . 101159 CAGCTCATCATTCAGGCGATTGTACCT Q L I I Q A I V P S S S F R R L Y P A H H S G D C T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-20_AGS-1_PPS_1 (99659 101185) (frame '1'; 1527 bp, 509 residues) 1 SDPESDLPGY FGVLKRLKEA LKFLGENCDM AIQWLADIVE YLEDHNVADD KFISSLKEAL 61 TTLKELHRGE DWSCLDGGLL EAALDRLENE FRRLLTENSV PLPMSTPDLP GEQACIAPSL 121 LPVAVIKKLQ SILGRLVANN RLEKCVSIYV EVRSSNVRES LQALNLDYLE ISVSEFNDVQ 181 SIEGHIANWG KHLEFAVKHL LEAEYKLCND VFDRFGLDVW MGCFAKIASQ ASILAFIQFG 241 KTVTESKKDP IKMLKLLDIF ASLNKLRLDF NRLFGGAACA EIQRLTRDLI KRVIDGASEL 301 FWELQVQVEL QRQIPPPPDG GVPKLIIFIT DYCNKLLGDD YKPMLTQVLV IERSWKREIF 361 QERLLFDELL NIMRAVQLNL ETWSKGYKDD TLSYVFLMNN HWHLYKDLKG TKLGILLGDS 421 WLREHEQYKE YYSAVFLRES WAKLPALLSR EGLILFSGGR ATARDLVKKR LKAFNEAFDD 481 MYKKQSNWIM LDKELREKTC QLIIQAIVP 3-phase translation of AGS-1 (-strand): . . . . . . 101185 AGGTACAATCGCCTGAATGATGAGCTGGCATGTCTTTTCTCTTAGCTCTTTGTCAAGCAT R Y N R L N D E L A C L F S - L F V K H G T I A - M M S W H V F S L S S L S S M V Q S P E - - A G M S F L L A L C Q A . . . . . . 101125 GATCCAATTAGACTGCTTCTTATACATGTCATCAAAAGCTTCATTAAAAGCTTTTAATCG D P I R L L L I H V I K S F I K S F - S I Q L D C F L Y M S S K A S L K A F N R - S N - T A S Y T C H Q K L H - K L L I . . . . . . 101065 TTTCTTAACAAGATCGCGAGCAGTGGCACGCCCACCAGAGAAGAGAATGAGACCTTCCCG F L N K I A S S G T P T R E E N E T F P F L T R S R A V A R P P E K R M R P S R V S - Q D R E Q W H A H Q R R E - D L P . . . . . . 101005 GCTTAATAGAGCTGGAAGCTTCGCCCAGCTCTCTCTCAAGAAAACGGCAGAATAGTACTC A - - S W K L R P A L S Q E N G R I V L L N R A G S F A Q L S L K K T A E - Y S G L I E L E A S P S S L S R K R Q N S T . . . . . . 100945 TTTGTACTGTTCATGTTCTCTCAACCAAGAATCACCCAAAAGAATACCAAGCTTTGTGCC F V L F M F S Q P R I T Q K N T K L C A L Y C S C S L N Q E S P K R I P S F V P L C T V H V L S T K N H P K E Y Q A L C . . . . . . 100885 TTTCAGATCCTTGTAAAGGTGCCAATGATTGTTCATCAAGAACACGTATGACAAGGTATC F Q I L V K V P M I V H Q E H V - Q G I F R S L - R C Q - L F I K N T Y D K V S L S D P C K G A N D C S S R T R M T R Y . . . . . . 100825 ATCTTTGTATCCCTTGGACCATGTCTCTAGATTAAGCTGAACAGCTCTCATAATATTCAG I F V S L G P C L - I K L N S S H N I Q S L Y P L D H V S R L S - T A L I I F S H L C I P W T M S L D - A E Q L S - Y S . . . . . . 100765 TAGCTCATCAAAGAGAAGCCGCTCTTGAAATATTTCACGCTTCCAACTTCTTTCGATTAC - L I K E K P L L K Y F T L P T S F D Y S S S K R S R S - N I S R F Q L L S I T V A H Q R E A A L E I F H A S N F F R L . . . . . . 100705 CAAAACTTGGGTGAGCATTGGCTTATAATCATCTCCAAGCAGCTTATTGCAGTAGTCGGT Q N L G E H W L I I I S K Q L I A V V G K T W V S I G L - S S P S S L L Q - S V P K L G - A L A Y N H L Q A A Y C S S R . . . . . . 100645 GATAAAGATGATAAGTTTCGGGACACCACCATCTGGAGGTGGTGGTATTTGCCTCTGCAA D K D D K F R D T T I W R W W Y L P L Q I K M I S F G T P P S G G G G I C L C N - - R - - V S G H H H L E V V V F A S A . . . . . . 100585 TTCAACTTGAACCTGAAGTTCCCAGAAGAGTTCACTAGCCCCATCAATCACCCTCTTGAT F N L N L K F P E E F T S P I N H P L D S T - T - S S Q K S S L A P S I T L L M I Q L E P E V P R R V H - P H Q S P S - . . . . . . 100525 GAGATCCCTCGTCAACCTCTGGATTTCAGCACATGCAGCTCCACCGAAGAGCCGATTGAA E I P R Q P L D F S T C S S T E E P I E R S L V N L W I S A H A A P P K S R L K - D P S S T S G F Q H M Q L H R R A D - . . . . . . 100465 ATCCAATCTCAGTTTGTTTAAAGATGCAAAGATATCTAACAGTTTTAACATCTTAATTGG I Q S Q F V - R C K D I - Q F - H L N W S N L S L F K D A K I S N S F N I L I G N P I S V C L K M Q R Y L T V L T S - L . . . . . . 100405 ATCCTTCTTACTCTCCGTAACAGTTTTTCCAAACTGAATGAATGCAAGAATACTTGCCTG I L L T L R N S F S K L N E C K N T C L S F L L S V T V F P N - M N A R I L A W D P S Y S P - Q F F Q T E - M Q E Y L P . . . . . . 100345 GGAAGCTATTTTAGCGAAACAACCCATCCACACATCCAATCCGAATCTATCAAAGACATC G S Y F S E T T H P H I Q S E S I K D I E A I L A K Q P I H T S N P N L S K T S G K L F - R N N P S T H P I R I Y Q R H . . . . . . 100285 ATTACAGAGTTTATACTCAGCCTCTAAAAGATGTTTCACAGCAAACTCTAGATGCTTACC I T E F I L S L - K M F H S K L - M L T L Q S L Y S A S K R C F T A N S R C L P H Y R V Y T Q P L K D V S Q Q T L D A Y . . . . . . 100225 CCAATTAGCAATGTGGCCCTCTATGCTCTGCACGTCATTGAACTCGGAGACTGAAATCTC P I S N V A L Y A L H V I E L G D - N L Q L A M W P S M L C T S L N S E T E I S P N - Q C G P L C S A R H - T R R L K S . . . . . . 100165 AAGGTAATCCAAATTAAGTGCCTGCAAACTTTCCCTGACATTAGAACTCCGTACCTCAAC K V I Q I K C L Q T F P D I R T P Y L N R - S K L S A C K L S L T L E L R T S T Q G N P N - V P A N F P - H - N S V P Q . . . . . . 100105 ATAGATTGACACACACTTTTCAAGCCTGTTATTGGCAACCAATCTGCCAAGTATACTCTG I D - H T L F K P V I G N Q S A K Y T L - I D T H F S S L L L A T N L P S I L C H R L T H T F Q A C Y W Q P I C Q V Y S . . . . . . 100045 TAGCTTCTTTATAACAGCCACAGGCAAAAGGGATGGAGCTATGCAGGCCTGTTCACCTGG - L L Y N S H R Q K G W S Y A G L F T W S F F I T A T G K R D G A M Q A C S P G V A S L - Q P Q A K G M E L C R P V H L . . . . . . 99985 TAAGTCCGGAGTAGACATAGGCAACGGTACACTATTTTCAGTCAGTAACCGCCTAAACTC - V R S R H R Q R Y T I F S Q - P P K L K S G V D I G N G T L F S V S N R L N S V S P E - T - A T V H Y F Q S V T A - T . . . . . . 99925 ATTTTCCAATCTATCCAACGCAGCCTCAAGAAGTCCTCCATCAAGGCAACTCCAATCCTC I F Q S I Q R S L K K S S I K A T P I L F S N L S N A A S R S P P S R Q L Q S S H F P I Y P T Q P Q E V L H Q G N S N P . . . . . . 99865 CCCACGATGCAACTCCTTCAGAGTAGTCAACGCCTCCTTTAAACTAGAAATGAACTTGTC P T M Q L L Q S S Q R L L - T R N E L V P R C N S F R V V N A S F K L E M N L S P H D A T P S E - S T P P L N - K - T C . . . . . . 99805 ATCAGCAACATTATGATCCTCTAGATACTCCACAATGTCCGCCAACCACTGAATCGCCAT I S N I M I L - I L H N V R Q P L N R H S A T L - S S R Y S T M S A N H - I A M H Q Q H Y D P L D T P Q C P P T T E S P . . . . . . 99745 GTCACAATTCTCCCCCAAAAATTTTAACGCCTCTTTAAGCCTCTTGAGCACACCGAAGTA V T I L P Q K F - R L F K P L E H T E V S Q F S P K N F N A S L S L L S T P K Y C H N S P P K I L T P L - A S - A H R S . . . 99685 CCCAGGGAGGTCAGATTCAGGATCAGA P R E V R F R I R P G R S D S G S T Q G G Q I Q D Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-20_AGS-1_PPS_1 (100762 100445) (frame '1'; 315 bp, 105 residues) 1 LIKEKPLLKY FTLPTSFDYQ NLGEHWLIII SKQLIAVVGD KDDKFRDTTI WRWWYLPLQF 61 NLNLKFPEEF TSPINHPLDE IPRQPLDFST CSSTEEPIEI QSQFV- >C08HBa0037O11.1-_PGL-20_AGS-1_PPS_2 (100101 99790) (frame '2'; 309 bp, 103 residues) 1 IDTHFSSLLL ATNLPSILCS FFITATGKRD GAMQACSPGK SGVDIGNGTL FSVSNRLNSF 61 SNLSNAASRS PPSRQLQSSP RCNSFRVVNA SFKLEMNLSS ATL- >C08HBa0037O11.1-_PGL-20_AGS-1_PPS_3 (101015 100791) (frame '0'; 222 bp, 74 residues) 1 DLPGLIELEA SPSSLSRKRQ NSTLCTVHVL STKNHPKEYQ ALCLSDPCKG ANDCSSRTRM 61 TRYHLCIPWT MSLD- >C08HBa0037O11.1-_PGL-20_AGS-1_PPS_4 (100368 100159) (frame '2'; 207 bp, 69 residues) 1 MNARILAWEA ILAKQPIHTS NPNLSKTSLQ SLYSASKRCF TANSRCLPQL AMWPSMLCTS 61 LNSETEISR- PGL 21 (+ strand): 106516 107658 AGS-1 (106516 106976,107062 107658) SCR (e 1.000 d 0.959 a 0.980,e 0.990) Exon 1 106516 106976 ( 461 n); score: 1.000 Intron 1 106977 107061 ( 85 n); Pd: 0.959 Pa: 0.980 Exon 2 107062 107658 ( 597 n); score: 0.990 PGS (106516 106976,107062 107271) SGN-E369697+ PGS (106516 106976,107062 107099) SGN-E247311+ PGS (106944 106976,107062 107658) SGN-E369696- 3-phase translation of AGS-1 (+strand): . . . . . . 106516 GTCTGTTGCAGCTTGTAAAAGGAAGCAAGAAAGCATCTGGCTCAGACTTAAAGTTCTTGA V C C S L - K E A R K H L A Q T - S S - S V A A C K R K Q E S I W L R L K V L D L L Q L V K G S K K A S G S D L K F L . . . . . . 106576 TTTACGGAAAAACAGGTTGGATTGGAGGGTTGTTAGGAAAGATTTGTGAAGAACGTGGAA F T E K Q V G L E G C - E R F V K N V E L R K N R L D W R V V R K D L - R T W N I Y G K T G W I G G L L G K I C E E R G . . . . . . 106636 TAGCATACGAGTATGGATTAGGACGACTACAGGATAGGAGTTCTCTAATGCAAGACATGA - H T S M D - D D Y R I G V L - C K T - S I R V W I R T T T G - E F S N A R H D I A Y E Y G L G R L Q D R S S L M Q D M . . . . . . 106696 TAAGAGTAAAGCCAACTCATGTTTTCAACGCGGCTGGTGTTACTGGGAGGCCTAATGTGG - E - S Q L M F S T R L V L L G G L M W K S K A N S C F Q R G W C Y W E A - C G I R V K P T H V F N A A G V T G R P N V . . . . . . 106756 ATTGGTGTGAATCACACAAAGTAGAAACAATTAGAACGAATGTTGCTGGTACACTAACTT I G V N H T K - K Q L E R M L L V H - L L V - I T Q S R N N - N E C C W Y T N F D W C E S H K V E T I R T N V A G T L T . . . . . . 106816 TAGCTGATATCTGCAGAGAGGCTGATATCTTAGTGATGAATTTCGCGACAGGTTGCATAT - L I S A E R L I S - - - I S R Q V A Y S - Y L Q R G - Y L S D E F R D R L H I L A D I C R E A D I L V M N F A T G C I . . . . . . 106876 TTGAATATGATGAGCAGCATCCACTAGGCTCAGGCATCGGATTCAAAGAAGAAGACAAAC L N M M S S I H - A Q A S D S K K K T N - I - - A A S T R L R H R I Q R R R Q T F E Y D E Q H P L G S G I G F K E E D K . . . . . : . 106936 CAAATTTTACAGGATCCTTCTACTCGAAAACCAAAGCCATG : GTGGAAGAGCTTCTAAAAG Q I L Q D P S T R K P K P W : W K S F - K K F Y R I L L L E N Q S H : G G R A S K R P N F T G S F Y S K T K A M : V E E L L K . . . . . . 107081 AATACAACAACGTTTGCACTCTCAGAGTAAGAATGCCAATATCATCAGACCTTAGTAACC N T T T F A L S E - E C Q Y H Q T L V T I Q Q R L H S Q S K N A N I I R P - - P E Y N N V C T L R V R M P I S S D L S N . . . . . . 107141 CAAGAAACTTCATCACAAAGATCACGCGTTATGATAAAGTGGTAAACATCCCAAACAGCA Q E T S S Q R S R V M I K W - T S Q T A K K L H H K D H A L - - S G K H P K Q H P R N F I T K I T R Y D K V V N I P N S . . . . . . 107201 TGACAGTTCTAGATGAGCTACTACCAATCTCTATCGAAATGGCAAAGAGAAACTGTAGAG - Q F - M S Y Y Q S L S K W Q R E T V E D S S R - A T T N L Y R N G K E K L - R M T V L D E L L P I S I E M A K R N C R . . . . . . 107261 GTATATGGAACTTCACAAATCCGGGAGTTGTGAGCCACAACGAGATTCTAGAGATGTACA V Y G T S Q I R E L - A T T R F - R C T Y M E L H K S G S C E P Q R D S R D V Q G I W N F T N P G V V S H N E I L E M Y . . . . . . 107321 GAGACTACATTGATCCTAAATTCAAATGGCAGAATTTCGATCTTCAAGAACAAGCTAAAG E T T L I L N S N G R I S I F K N K L K R L H - S - I Q M A E F R S S R T S - S R D Y I D P K F K W Q N F D L Q E Q A K . . . . . . 107381 TGATCGTTGCACCGCGAAGTAACAATGAGCTTGACATGACAAAGCTGAAAAATGAGTTTC - S L H R E V T M S L T - Q S - K M S F D R C T A K - Q - A - H D K A E K - V S V I V A P R S N N E L D M T K L K N E F . . . . . . 107441 CAGAATTGCTATCAATCAAAGATTCAATCATCAAGTATGTTTTTGGACCTAACTAAAAAA Q N C Y Q S K I Q S S S M F L D L T K K R I A I N Q R F N H Q V C F W T - L K N P E L L S I K D S I I K Y V F G P N - K . . . . . . 107501 CATAAACTTTCAAAAAAAATGTATTTTTGGGATAGTTTTTATTTTTTTTCTTTTCATCAA H K L S K K M Y F W D S F Y F F S F H Q I N F Q K K C I F G I V F I F F L F I N T - T F K K N V F L G - F L F F F F S S . . . . . . 107561 TCTAAGACTGTTGTCACAGTTACTTGAGATTGTAGTTTATGATACATAATGTGATTTAAG S K T V V T V T - D C S L - Y I M - F K L R L L S Q L L E I V V Y D T - C D L R I - D C C H S Y L R L - F M I H N V I - . . . . 107621 AAATTCTAATTTTCCTTTTTTTTTTATATATATATAAA K F - F S F F F Y I Y I N S N F P F F F I Y I - E I L I F L F F L Y I Y K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-21_AGS-1_PPS_1 (106518 106976,107062 107496) (frame '0'; 891 bp, 297 residues) 1 LLQLVKGSKK ASGSDLKFLI YGKTGWIGGL LGKICEERGI AYEYGLGRLQ DRSSLMQDMI 61 RVKPTHVFNA AGVTGRPNVD WCESHKVETI RTNVAGTLTL ADICREADIL VMNFATGCIF 121 EYDEQHPLGS GIGFKEEDKP NFTGSFYSKT KAMVEELLKE YNNVCTLRVR MPISSDLSNP 181 RNFITKITRY DKVVNIPNSM TVLDELLPIS IEMAKRNCRG IWNFTNPGVV SHNEILEMYR 241 DYIDPKFKWQ NFDLQEQAKV IVAPRSNNEL DMTKLKNEFP ELLSIKDSII KYVFGPN- PGL 22 (+ strand): 115209 121296 AGS-1 (115209 115289,116777 116865,117056 117281,117412 117522,117717 118043) SCR (e 0.889 d 0.995 a 0.855,e 0.854 d 0.998 a 0.862,e 0.878 d 0.997 a 0.000,e 0.811 d 0.922 a 0.992,e 0.641) Exon 1 115209 115289 ( 81 n); score: 0.889 Intron 1 115290 116776 (1487 n); Pd: 0.995 Pa: 0.855 Exon 2 116777 116865 ( 89 n); score: 0.854 Intron 2 116866 117055 ( 190 n); Pd: 0.998 Pa: 0.862 Exon 3 117056 117281 ( 226 n); score: 0.878 Intron 3 117282 117411 ( 130 n); Pd: 0.997 Pa: 0.000 Exon 4 117412 117522 ( 111 n); score: 0.811 Intron 4 117523 117716 ( 194 n); Pd: 0.922 Pa: 0.992 Exon 5 117717 118043 ( 327 n); score: 0.641 PGS (115209 115289,116777 116865,117056 117281,117412 117522,117717 117867) SGN-E263417+ PGS (115209 115289,116777 116865,117056 117281,117412 117522,117717 117867) SGN-E316904+ PGS (115209 115289,116777 116865,117056 117281,117412 117522,117717 117857) SGN-E348064+ PGS (115209 115289,116777 116865,117056 117281,117412 117522,117717 117767) SGN-E268740+ PGS (115209 115289,116777 116865,117056 117281,117412 117522,117717 117753) SGN-E262171+ PGS (115209 115289,116777 116865,117056 117281,117412 117522,117717 117753) SGN-E343038+ PGS (115209 115289,116777 116865,117056 117281,117412 117522) SGN-E368464+ PGS (115209 115289,116777 116865,117056 117281,117412 117459) SGN-E312320+ PGS (115209 115289,116777 116865,117056 117281,117412 117445) SGN-E302383+ PGS (115209 115289,116777 116865,117056 117281,117412 117438) SGN-E246798+ PGS (115209 115289,116777 116865,117056 117277) SGN-E312392+ PGS (115209 115289,116777 116865,117056 117274) SGN-E317665+ PGS (116847 116865,117056 117281,117412 117522,117717 118043) SGN-E368463- 3-phase translation of AGS-1 (+strand): . . . . . . 115209 AGTCTATGTTGGAAATCTGGACCCTAGGGTCAGTGAAAGAGAGCTTGAAGATGAATTCCG S L C W K S G P - G Q - K R A - R - I P V Y V G N L D P R V S E R E L E D E F R S M L E I W T L G S V K E S L K M N S . . . : . . . 115269 CATCTTTGGAGTTATAAGAAG : TGTTTGGGTTGCAAGACGCCCCCCTGGCTACGCTTTTAT H L W S Y K K : C L G C K T P P W L R F Y I F G V I R S : V W V A R R P P G Y A F I A S L E L - E : V F G L Q D A P L A T L L . . . . . : . 116816 TGACTTCGATGATCGGCGGGATGCACAAGATGCAATCAAAGAGCTGGATG : GTAAGAATGG - L R - S A G C T R C N Q R A G W : - E W D F D D R R D A Q D A I K E L D : G K N G L T S M I G G M H K M Q S K S W M : V R M . . . . . . 117066 ATGGAGAGTGGAGCTTTCACATAATTCTAGAGGTGGAGGTGGTGGGGGCCGTGGAGGAGG M E S G A F T - F - R W R W W G P W R R W R V E L S H N S R G G G G G G R G G G D G E W S F H I I L E V E V V G A V E E . . . . . . 117126 TCGAGGTCGATCTGGAGGCTCTGATTTGAAGTGCTACGAATGTGGTGAATCAGGTCATTT S R S I W R L - F E V L R M W - I R S F R G R S G G S D L K C Y E C G E S G H F V E V D L E A L I - S A T N V V N Q V I . . . . . . 117186 TGCTCGTGAGTGCAGAACGCGTGGGGGTCCAGGAGCTGGAAGACGTAGAAGTCGGAGCCC C S - V Q N A W G S R S W K T - K S E P A R E C R T R G G P G A G R R R S R S P L L V S A E R V G V Q E L E D V E V G A . . . . : . . 117246 TCCTAGATACCGCAGGAGCCCAAGTTATGGTCGTAG : GAGTTACAGTCCACGTGGGCGTTC S - I P Q E P K L W S - : E L Q S T W A F P R Y R R S P S Y G R R : S Y S P R G R S L L D T A G A Q V M V V : G V T V H V G V . . . . . . 117436 CCCTAGGCGCCGAAGCCCGTCACCACGTGGTCGCAGCTATAGCCGTTCTCCATATCGAGG P - A P K P V T T W S Q L - P F S I S R P R R R S P S P R G R S Y S R S P Y R G P L G A E A R H H V V A A I A V L H I E . . . : . . . 117496 TCGAGAAGAAGCTCCATATGTTAATGG : AAATGGACTTAGAGAGTGTCACAGAAGCCGAAG S R R S S I C - W : K W T - R V S Q K P K R E E A P Y V N G : N G L R E C H R S R S V E K K L H M L M : E M D L E S V T E A E . . . . . . 117750 CTGAATGAAAGAGATGATAGCCTGACATGTCCTGGAGTCTTTCGATTTGTGTTACTGTCC L N E R D D S L T C P G V F R F V L L S - M K E M I A - H V L E S F D L C Y C P A E - K R - - P D M S W S L S I C V T V . . . . . . 117810 TTGACTTAATCACAACTGTGTAAGTGAGGCCATGCCCTCAGCTTAAACTGGTGGTTTTGG L T - S Q L C K - G H A L S L N W W F W - L N H N C V S E A M P S A - T G G F G L D L I T T V - V R P C P Q L K L V V L . . . . . . 117870 TTAAGTTTAAGTTCTTGCTTTGGTGTCGTTAGTGTTAGTTTTATTTTTACTCAATGTTAC L S L S S C F G V V S V S F I F T Q C Y - V - V L A L V S L V L V L F L L N V T V K F K F L L W C R - C - F Y F Y S M L . . . . . . 117930 CCTTTTTAAGAACCTAATATCATAGGGATTTATATGTTGGATTTTATGGTAGTTGTTATT P F - E P N I I G I Y M L D F M V V V I L F K N L I S - G F I C W I L W - L L F P F L R T - Y H R D L Y V G F Y G S C Y . . . . . . 117990 TTTTATGAAGAAAATCACAAAGAATGTTGCTAAATATTAATGTTTTGTTTTCTT F Y E E N H K E C C - I L M F C F L F M K K I T K N V A K Y - C F V F F L - R K S Q R M L L N I N V L F S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-22_AGS-1_PPS_1 (115210 115289,116777 116865,117056 117281,117412 117522,117717 117753) (frame '2'; 540 bp, 180 residues) 1 VYVGNLDPRV SERELEDEFR IFGVIRSVWV ARRPPGYAFI DFDDRRDAQD AIKELDGKNG 61 WRVELSHNSR GGGGGGRGGG RGRSGGSDLK CYECGESGHF ARECRTRGGP GAGRRRSRSP 121 PRYRRSPSYG RRSYSPRGRS PRRRSPSPRG RSYSRSPYRG REEAPYVNGN GLRECHRSRS 181 - AGS-2 (118054 119191) SCR (e 0.997) Exon 1 118054 119191 (1138 n); score: 0.997 PGS (118054 118598) SGN-E247996+ PGS (118130 118766) SGN-E252467+ PGS (118275 119064) SGN-E260487+ PGS (118554 119191) SGN-E344722+ 3-phase translation of AGS-2 (+strand): . . . . . . 118054 GTCTTCCTGGTACTGCTTCATTGGTTTTCTGCTTCTACACTCTGTGGTTTCATTCTTCAC V F L V L L H W F S A S T L C G F I L H S S W Y C F I G F L L L H S V V S F F T L P G T A S L V F C F Y T L W F H S S . . . . . . 118114 TGCCCTGCTGCGGGATCTTCAATTTTGAGGATTGTGGATCCCAGCTGGCTACATTGCTAG C P A A G S S I L R I V D P S W L H C - A L L R D L Q F - G L W I P A G Y I A R L P C C G I F N F E D C G S Q L A T L L . . . . . . 118174 ATGCTTCTGTTTCTTGAATCTCTGTGGATATGACGCGCCTCTCCTCAAATTATAGTGGTA M L L F L E S L W I - R A S P Q I I V V C F C F L N L C G Y D A P L L K L - W Y D A S V S - I S V D M T R L S S N Y S G . . . . . . 118234 TTTCTTTAAGTTCATATTAAGGATGAGGAATGACATGACACGCGACTGGCAGGTACAATC F L - V H I K D E E - H D T R L A G T I F F K F I L R M R N D M T R D W Q V Q S I S L S S Y - G - G M T - H A T G R Y N . . . . . . 118294 TGTTCCAAGGAGTTTGGGGATTTGATGTTCTCCTTTAAACTAAATTGTGAATGGTGCTCC C S K E F G D L M F S F K L N C E W C S V P R S L G I - C S P L N - I V N G A P L F Q G V W G F D V L L - T K L - M V L . . . . . . 118354 TTATGGGTTCATAGGGCAGTGTCCGAGTCTATGCTCCTGAGAGTTCTGGTTCCCTTTTGA L W V H R A V S E S M L L R V L V P F - Y G F I G Q C P S L C S - E F W F P F D L M G S - G S V R V Y A P E S S G S L L . . . . . . 118414 CTTTATATGTTAGCTGGCTTCATTTTGCTTTTTTGCTCCTTTTCGCCCACTCTTTCAATA L Y M L A G F I L L F C S F S P T L S I F I C - L A S F C F F A P F R P L F Q Y T L Y V S W L H F A F L L L F A H S F N . . . . . . 118474 TCACCTGTCATATATCAGTCCTCTTTTAAAAGAGTATTCTCCATAATTTCTTTCTGTCTA S P V I Y Q S S F K R V F S I I S F C L H L S Y I S P L L K E Y S P - F L S V Y I T C H I S V L F - K S I L H N F F L S . . . . . . 118534 TCAGGGATAAAGAGTTGGTTACAATTTTATTTAAGTGTTCCCTTTGAGAGTGACTGATAT S G I K S W L Q F Y L S V P F E S D - Y Q G - R V G Y N F I - V F P L R V T D I I R D K E L V T I L F K C S L - E - L I . . . . . . 118594 CTTTCAAAATTTTTACTTTTTCTACTTCTCCACACAAAGCTAGTGTTTTGTTTTAAAGGT L S K F L L F L L L H T K L V F C F K G F Q N F Y F F Y F S T Q S - C F V L K V S F K I F T F S T S P H K A S V L F - R . . . . . . 118654 GCCCCTTGTACCCCCCTCCCTTTTTTACCTTAAAAAACAGTCATATCTATTTCTGTTAAA A P C T P L P F L P - K T V I S I S V K P L V P P S L F Y L K K Q S Y L F L L N C P L Y P P P F F T L K N S H I Y F C - . . . . . . 118714 CTTCATCGTTCTTTTATCAATTAAGTTCTCTTTTTTCATTATCTGACATACATAGTGTTG L H R S F I N - V L F F H Y L T Y I V L F I V L L S I K F S F F I I - H T - C W T S S F F Y Q L S S L F S L S D I H S V . . . . . . 118774 GGTGTCTGTTAGTAGTTTCGCTTATCAAAGTTGTAGAACATGCATGAATGTAGAGGACCG G V C - - F R L S K L - N M H E C R G P V S V S S F A Y Q S C R T C M N V E D R G C L L V V S L I K V V E H A - M - R T . . . . . . 118834 CTCGCCATTGGCCTTTCCAGTAGGAGAGTTTGCTTTGACTGCCTGCACCCAAGATGTTCA L A I G L S S R R V C F D C L H P R C S S P L A F P V G E F A L T A C T Q D V Q A R H W P F Q - E S L L - L P A P K M F . . . . . . 118894 GCTGATTGAGATTCTCGTCTTTGAGATATGGCCTCACTGCTCTGGGTAATTCTTACACCA A D - D S R L - D M A S L L W V I L T P L I E I L V F E I W P H C S G - F L H Q S - L R F S S L R Y G L T A L G N S Y T . . . . . . 118954 GTTTACATCAATTATTCTAGTATATCTGTGCAGTAATTCACTAGCGATTGACTGAAGTTC V Y I N Y S S I S V Q - F T S D - L K F F T S I I L V Y L C S N S L A I D - S S S L H Q L F - Y I C A V I H - R L T E V . . . . . . 119014 AATCATGTACGTCTCTTTGATTGCTCCAGTCCTTTTTCTGTCCATTTTGCTAGAAACCAA N H V R L F D C S S P F S V H F A R N Q I M Y V S L I A P V L F L S I L L E T N Q S C T S L - L L Q S F F C P F C - K P . . . . . . 119074 TTCTATATTGATATATCTGGATATGTTCTAAATTTCTGTTTCCTACTTCTTTTGTCTGTT F Y I D I S G Y V L N F C F L L L L S V S I L I Y L D M F - I S V S Y F F C L F I L Y - Y I W I C S K F L F P T S F V C . . . . . . 119134 TATGCTCTTTATAAGCATTGTTTTTCTTGATTTGAATGTGATAGAGTTTGGATTGGAA Y A L Y K H C F S - F E C D R V W I G M L F I S I V F L D L N V I E F G L E L C S L - A L F F L I - M - - S L D W Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 119191 TTCCAATCCAAACTCTATCACATTCAAATCAAGAAAAACAATGCTTATAAAGAGCATAAA F Q S K L Y H I Q I K K N N A Y K E H K S N P N S I T F K S R K T M L I K S I N P I Q T L S H S N Q E K Q C L - R A - . . . . . . 119131 CAGACAAAAGAAGTAGGAAACAGAAATTTAGAACATATCCAGATATATCAATATAGAATT Q T K E V G N R N L E H I Q I Y Q Y R I R Q K K - E T E I - N I S R Y I N I E L T D K R S R K Q K F R T Y P D I S I - N . . . . . . 119071 GGTTTCTAGCAAAATGGACAGAAAAAGGACTGGAGCAATCAAAGAGACGTACATGATTGA G F - Q N G Q K K D W S N Q R D V H D - V S S K M D R K R T G A I K E T Y M I E W F L A K W T E K G L E Q S K R R T - L . . . . . . 119011 ACTTCAGTCAATCGCTAGTGAATTACTGCACAGATATACTAGAATAATTGATGTAAACTG T S V N R - - I T A Q I Y - N N - C K L L Q S I A S E L L H R Y T R I I D V N W N F S Q S L V N Y C T D I L E - L M - T . . . . . . 118951 GTGTAAGAATTACCCAGAGCAGTGAGGCCATATCTCAAAGACGAGAATCTCAATCAGCTG V - E L P R A V R P Y L K D E N L N Q L C K N Y P E Q - G H I S K T R I S I S - G V R I T Q S S E A I S Q R R E S Q S A . . . . . . 118891 AACATCTTGGGTGCAGGCAGTCAAAGCAAACTCTCCTACTGGAAAGGCCAATGGCGAGCG N I L G A G S Q S K L S Y W K G Q W R A T S W V Q A V K A N S P T G K A N G E R E H L G C R Q S K Q T L L L E R P M A S . . . . . . 118831 GTCCTCTACATTCATGCATGTTCTACAACTTTGATAAGCGAAACTACTAACAGACACCCA V L Y I H A C S T T L I S E T T N R H P S S T F M H V L Q L - - A K L L T D T Q G P L H S C M F Y N F D K R N Y - Q T P . . . . . . 118771 ACACTATGTATGTCAGATAATGAAAAAAGAGAACTTAATTGATAAAAGAACGATGAAGTT T L C M S D N E K R E L N - - K N D E V H Y V C Q I M K K E N L I D K R T M K F N T M Y V R - - K K R T - L I K E R - S . . . . . . 118711 TAACAGAAATAGATATGACTGTTTTTTAAGGTAAAAAAGGGAGGGGGGTACAAGGGGCAC - Q K - I - L F F K V K K G G G Y K G H N R N R Y D C F L R - K R E G G T R G T L T E I D M T V F - G K K G R G V Q G A . . . . . . 118651 CTTTAAAACAAAACACTAGCTTTGTGTGGAGAAGTAGAAAAAGTAAAAATTTTGAAAGAT L - N K T L A L C G E V E K V K I L K D F K T K H - L C V E K - K K - K F - K I P L K Q N T S F V W R S R K S K N F E R . . . . . . 118591 ATCAGTCACTCTCAAAGGGAACACTTAAATAAAATTGTAACCAACTCTTTATCCCTGATA I S H S Q R E H L N K I V T N S L S L I S V T L K G N T - I K L - P T L Y P - - Y Q S L S K G T L K - N C N Q L F I P D . . . . . . 118531 GACAGAAAGAAATTATGGAGAATACTCTTTTAAAAGAGGACTGATATATGACAGGTGATA D R K K L W R I L F - K R T D I - Q V I T E R N Y G E Y S F K R G L I Y D R - Y R Q K E I M E N T L L K E D - Y M T G D . . . . . . 118471 TTGAAAGAGTGGGCGAAAAGGAGCAAAAAAGCAAAATGAAGCCAGCTAACATATAAAGTC L K E W A K R S K K A K - S Q L T Y K V - K S G R K G A K K Q N E A S - H I K S I E R V G E K E Q K S K M K P A N I - S . . . . . . 118411 AAAAGGGAACCAGAACTCTCAGGAGCATAGACTCGGACACTGCCCTATGAACCCATAAGG K R E P E L S G A - T R T L P Y E P I R K G N Q N S Q E H R L G H C P M N P - G Q K G T R T L R S I D S D T A L - T H K . . . . . . 118351 AGCACCATTCACAATTTAGTTTAAAGGAGAACATCAAATCCCCAAACTCCTTGGAACAGA S T I H N L V - R R T S N P Q T P W N R A P F T I - F K G E H Q I P K L L G T D E H H S Q F S L K E N I K S P N S L E Q . . . . . . 118291 TTGTACCTGCCAGTCGCGTGTCATGTCATTCCTCATCCTTAATATGAACTTAAAGAAATA L Y L P V A C H V I P H P - Y E L K E I C T C Q S R V M S F L I L N M N L K K Y I V P A S R V S C H S S S L I - T - R N . . . . . . 118231 CCACTATAATTTGAGGAGAGGCGCGTCATATCCACAGAGATTCAAGAAACAGAAGCATCT P L - F E E R R V I S T E I Q E T E A S H Y N L R R G A S Y P Q R F K K Q K H L T T I I - G E A R H I H R D S R N R S I . . . . . . 118171 AGCAATGTAGCCAGCTGGGATCCACAATCCTCAAAATTGAAGATCCCGCAGCAGGGCAGT S N V A S W D P Q S S K L K I P Q Q G S A M - P A G I H N P Q N - R S R S R A V - Q C S Q L G S T I L K I E D P A A G Q . . . . . . 118111 GAAGAATGAAACCACAGAGTGTAGAAGCAGAAAACCAATGAAGCAGTACCAGGAAGAC E E - N H R V - K Q K T N E A V P G R K N E T T E C R S R K P M K Q Y Q E D - R M K P Q S V E A E N Q - S S T R K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1-_PGL-22_AGS-2_PPS_1 (118945 118730) (frame '1'; 213 bp, 71 residues) 1 ELPRAVRPYL KDENLNQLNI LGAGSQSKLS YWKGQWRAVL YIHACSTTLI SETTNRHPTL 61 CMSDNEKREL N- AGS-3 (118057 118285,118786 118938,121088 121101,121197 121296) SCR (e 1.000 d 0.608 a 0.017,e 1.000 d 0.991 a 0.779,e 1.000 d 0.000 a 0.000,e 1.000) Exon 1 118057 118285 ( 229 n); score: 1.000 Intron 1 118286 118785 ( 500 n); Pd: 0.608 Pa: 0.017 Exon 2 118786 118938 ( 153 n); score: 1.000 Intron 2 118939 121087 (2149 n); Pd: 0.991 Pa: 0.779 Exon 3 121088 121101 ( 14 n); score: 1.000 Intron 3 121102 121196 ( 95 n); Pd: 0.000 Pa: 0.000 Exon 4 121197 121296 ( 100 n); score: 1.000 PGS (118057 118285,118786 118938,121088 121101,121197 121296) SGN-E339738+ 3-phase translation of AGS-3 (+strand): . . . . . . 118057 TTCCTGGTACTGCTTCATTGGTTTTCTGCTTCTACACTCTGTGGTTTCATTCTTCACTGC F L V L L H W F S A S T L C G F I L H C S W Y C F I G F L L L H S V V S F F T A P G T A S L V F C F Y T L W F H S S L . . . . . . 118117 CCTGCTGCGGGATCTTCAATTTTGAGGATTGTGGATCCCAGCTGGCTACATTGCTAGATG P A A G S S I L R I V D P S W L H C - M L L R D L Q F - G L W I P A G Y I A R C P C C G I F N F E D C G S Q L A T L L D . . . . . . 118177 CTTCTGTTTCTTGAATCTCTGTGGATATGACGCGCCTCTCCTCAAATTATAGTGGTATTT L L F L E S L W I - R A S P Q I I V V F F C F L N L C G Y D A P L L K L - W Y F A S V S - I S V D M T R L S S N Y S G I . . . . . : . 118237 CTTTAAGTTCATATTAAGGATGAGGAATGACATGACACGCGACTGGCAG : TAGTTTCGCTT L - V H I K D E E - H D T R L A : V V S L F K F I L R M R N D M T R D W Q : - F R L S L S S Y - G - G M T - H A T G S : S F A . . . . . . 118797 ATCAAAGTTGTAGAACATGCATGAATGTAGAGGACCGCTCGCCATTGGCCTTTCCAGTAG I K V V E H A - M - R T A R H W P F Q - S K L - N M H E C R G P L A I G L S S R Y Q S C R T C M N V E D R S P L A F P V . . . . . . 118857 GAGAGTTTGCTTTGACTGCCTGCACCCAAGATGTTCAGCTGATTGAGATTCTCGTCTTTG E S L L - L P A P K M F S - L R F S S L R V C F D C L H P R C S A D - D S R L - G E F A L T A C T Q D V Q L I E I L V F . . . : . : . . 118917 AGATATGGCCTCACTGCTCTGG : GACAAACAGTCATG : ATAAGATGAAGGAGATGAAGAAAC R Y G L T A L : G Q T V M : I R - R R - R N D M A S L L W : D K Q S - : - D E G D E E T E I W P H C S G : T N S H : D K M K E M K K . . . . . . 121221 AGGAACATGGTCTGAATTATGACTCATTAGTACGTGGCAATCATCAAGACCTATCAAGGA R N M V - I M T H - Y V A I I K T Y Q G G T W S E L - L I S T W Q S S R P I K E Q E H G L N Y D S L V R G N H Q D L S R . . 121281 AGATGTTTAATCTAAG R C L I - D V - S K K M F N L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0037O11.1+_PGL-22_AGS-3_PPS_1 (118272 118285,118786 118938,121088 121101,121197 121294) (frame '0'; 279 bp, 93 residues) 1 HATGSSFAYQ SCRTCMNVED RSPLAFPVGE FALTACTQDV QLIEILVFEI WPHCSGTNSH 61 DKMKEMKKQE HGLNYDSLVR GNHQDLSRKM FNL AGS-4 (118627 118938,121088 121245) SCR (e 1.000 d 0.991 a 0.779,e 0.994) Exon 1 118627 118938 ( 312 n); score: 1.000 Intron 1 118939 121087 (2149 n); Pd: 0.991 Pa: 0.779 Exon 2 121088 121245 ( 158 n); score: 0.994 PGS (118627 118938,121088 121245) SGN-E243832+ 3-phase translation of AGS-4 (+strand): . . . . . . 118627 ACAAAGCTAGTGTTTTGTTTTAAAGGTGCCCCTTGTACCCCCCTCCCTTTTTTACCTTAA T K L V F C F K G A P C T P L P F L P - Q S - C F V L K V P L V P P S L F Y L K K A S V L F - R C P L Y P P P F F T L . . . . . . 118687 AAAACAGTCATATCTATTTCTGTTAAACTTCATCGTTCTTTTATCAATTAAGTTCTCTTT K T V I S I S V K L H R S F I N - V L F K Q S Y L F L L N F I V L L S I K F S F K N S H I Y F C - T S S F F Y Q L S S L . . . . . . 118747 TTTCATTATCTGACATACATAGTGTTGGGTGTCTGTTAGTAGTTTCGCTTATCAAAGTTG F H Y L T Y I V L G V C - - F R L S K L F I I - H T - C W V S V S S F A Y Q S C F S L S D I H S V G C L L V V S L I K V . . . . . . 118807 TAGAACATGCATGAATGTAGAGGACCGCTCGCCATTGGCCTTTCCAGTAGGAGAGTTTGC - N M H E C R G P L A I G L S S R R V C R T C M N V E D R S P L A F P V G E F A V E H A - M - R T A R H W P F Q - E S L . . . . . . 118867 TTTGACTGCCTGCACCCAAGATGTTCAGCTGATTGAGATTCTCGTCTTTGAGATATGGCC F D C L H P R C S A D - D S R L - D M A L T A C T Q D V Q L I E I L V F E I W P L - L P A P K M F S - L R F S S L R Y G . . : . . . . 118927 TCACTGCTCTGG : GACAAACAGTCATGGTAATTAGTAAATTTTGTAATTAATTAAGGTAAG S L L W : D K Q S W - L V N F V I N - G K H C S G : T N S H G N - - I L - L I K V S L T A L : G Q T V M V I S K F C N - L R - . . . . . . 121136 TACAAATTAAAAAATGAAGCAAAACAATTAGTTAAAGTGCTTCAACCAGTTGAAATTACA Y K L K N E A K Q L V K V L Q P V E I T T N - K M K Q N N - L K C F N Q L K L Q V Q I K K - S K T I S - S A S T S - N Y . . . . . 121196 GATAAGATGAAGGAGATGAAGAAACAGGAACATGGTCTGAATTATGACTC D K M K E M K K Q E H G L N Y D I R - R R - R N R N M V - I M T R - D E G D E E T G T W S E L - L Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Tue Jul 25 12:13:07 2006