GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 11:42:34 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-G3yZH/C08HBa0060C12/C08HBa0060C12.seq.screen ________________________________________________________________________________ Sequence 1: C08HBa0060C12.1, from 1 to 168460, both strands analyzed. ... started at: Tue Jul 25 12:05:42 2006 EST library file: /tmp/cxgn-bacpublish-resources-VuWhGL/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 320 EST library file: /tmp/cxgn-bacpublish-resources-VuWhGL/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 137 ******************************************************************************** EST sequence 1 -strand 585 n (File: SGN-E391490-) 1 AGACATTTCG AATTTGCGAC TGGGACAGAA ATTTTTTAGA AGATCTCAAA AAATTCCGAG 61 ATCTGTTCGG TTACAATGGA AAGATGAACA AGATACTAAA CTGGGACAGA AATTATGAGG 121 ATGGCCTCAA AATTTCGTCA TGGGACTTCC CCACAAGTCT GGAATGCCTC TGAAATTCAT 181 TCGACAAGCG TCGGACTCAA AGAAGCTCGT TAAGCCTGAC ATGACATGAC TTGGCATTGA 241 CTTTTTCGAG ATACTATTTC TTAAAAAATT TCTTGCTTCT CTTAAAAATT TCCCTTTTAT 301 ATTTCATCTG TTTTGGCATA AGATATTTTC TTATCTATCA AGAGTCGAGA AATCGGGAAA 361 TCAACCGAGG ACGTCAAGAC AAGGAGCAAA CAATCGAAGG GATCGACACA GATCAGTATG 421 TTTAAAACTG ACAATTTTTC TGTGGATGCA GGTTTATAGC TTCACTTCGA AATCGGCCGA 481 ATTCAGGCCA CTTGTAGTTC GATAAGCTTG ATTTACCGCA CGATTTCAAA GAATCAAAAG 541 CCACCTTGAC ACCGAATTAT GAAGGTATCG AAATGCTCGA GAATA Predicted gene structure (within gDNA segment 6177 to 81): Exon 1 786 681 ( 106 n); cDNA 480 585 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E391490- 0.991 106 0.181 C PGS_C08HBa0060C12.1-_SGN-E391490- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 539 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 585 hqPGS_C08HBa0060C12.1-_SGN-E391490- (786 681) ******************************************************************************** EST sequence 2 -strand 668 n (File: SGN-E391444-) 1 TTTTTACAAT AGAAACTGGG ACAGAATTTT GAGAGGGACT CAAAAATTCT CCAGAAGGAA 61 CCTTCTTTTC AGCGGATCAA ACTAAAGACA TTTCGAATTT GCGACTGGGA CAGAATTTTT 121 TAGAAGATCT CAAAAATTCC GAGATCTGTT CGGTTACAAT GGAAAGATGA ACAAGATACT 181 AAACTGGGAC AGAAATTTTG AGGATGGCCT CAAAATTTCG TCATGGGACT TCCCCACAAG 241 TCTGGAATGC CTCTGAAATT CATTCGACAA GCGTCGGACT CAAAGAAGCT CGTTAAGCCT 301 GACATGACAT GACTTGGCAT TGACTTTTTC GAGATACTAT TTCTTAAAAA ATTTCTTGCT 361 TCTCTTAAAA ATTTCCCTTT TATATTTCAT CTGTTTTGGC ATAAGATATT TTCTTATCTA 421 TCAAGAGTCG AGAAATCGGG AAATCAACCG AGGACGTCAA GACAAGGAGC AAACAATCGA 481 AGGGATCGAC ACAGATCAGT ATGTTTAAAA CTGACAATTT TTCTGTGGAT GCAGGTTTAT 541 AGCTTCACTT CGAAATCGGC CGAATTCAGG CCACTTGTAG TTCGATAAGC TTGATTTACC 601 GCACGATTTC AAAGAATCAA AAGCCACCTT GACACCGAAT TATGAAGGTA TCGAAATGCT 661 CGAGAATA Predicted gene structure (within gDNA segment 7007 to 81): Exon 1 786 681 ( 106 n); cDNA 563 668 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E391444- 0.991 106 0.159 C PGS_C08HBa0060C12.1-_SGN-E391444- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 622 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 668 hqPGS_C08HBa0060C12.1-_SGN-E391444- (786 681) ******************************************************************************** EST sequence 233 -strand 664 n (File: SGN-E396735-) 1 TACAATAGAA ACTGGGACAG AATTTTGAGA GGGACTCAAA AATTCTCCAG AAGGAACTTT 61 CTCTTCAGCG GATCAAACTA AAGACATTTC GAATTTGCGA CTGGGACAGA ATTTTTTAGA 121 AGATCTCAAA AATTCCGAGA TCTGTTCGGT TACAATGGAA AGATGAACAA GATACTAAAC 181 TGGGACAGAA ATTTTGAGGA TGGCCTCAAA ATTTCGTCAT GGGACTTCCC CACAAGTCTG 241 GAATGCCTCT GAAATTCATT CGACAAGCGT CGGACTCAAA GAAGCTCGTT AAGCCTGACA 301 TGACATGACT TGGCATTGAC TTTTTCGAGA TACTATTTCT TAAAAAATTT CTTGCTTCTC 361 TTAAAAATTT CCCTTTTATA TTTCATCTGT TTTGGCATAA GATATTTTCT TATCTATCAA 421 GAGTCGAGAA ATCGGGAAAT CAACCGAGGA CGTCAAGACA AGGAGCAAAC AATCGAAGGG 481 ATCGACACAG ATCAGTATGT TTAAAACTGA CAATTTTTCT GTGGATGCAG GTTTATAGCT 541 TCACTTCGAA ATCGGCCGAA TTCAGGCCAC TTGTAGTTCG ATAAGCTTGA TTTACCGCAC 601 GATTTCAAAG AATCAAAAGC CACCTTGACA CCGAATTATG AAGGTATCGA AATGCTCGAG 661 AATA Predicted gene structure (within gDNA segment 6967 to 81): Exon 1 786 681 ( 106 n); cDNA 559 664 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E396735- 0.991 106 0.160 C PGS_C08HBa0060C12.1-_SGN-E396735- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 618 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 664 hqPGS_C08HBa0060C12.1-_SGN-E396735- (786 681) ******************************************************************************** EST sequence 234 -strand 653 n (File: SGN-E395324-) 1 CTGGGACAGA ATTTTGAGAG GGACTCAAAA ATTCTCCAGA AGGAACCTTC TCTTCAGCGG 61 ATCAAACTAA AGACATTTCG AATTTGCGAC TGGGACAGAA TTTTTTAGAA GATCTCAAAA 121 ATTCCGAGAT CTGTTCGGTT ACAATGGAAA GATGAACAAG ATACTAAACT GGGACAGAAA 181 TTTTGAGGAT GGCCTCAAAA TTTCGTCATG GGACTTCCCC ACAAGTCTGG AATGCCTCTG 241 AAATTCATTC GACAAGCGTC GGACTCAAAG AAGCTCGTTA AGCCTGACAT GACATGACTT 301 GGCATTGACT TTTTCGAGAT ACTATTTCTT AAAAAATTTC TTGCTTCTCT TAAAAATTTC 361 CCTTTTATAT TTCATCTGTT TTGGCATAAG ATATTTTCTT ATCTATCAAG AGTCGAGAAA 421 TCGGGAAATC AACCGAGGAC GTCAAGACAA GGAGCAAACA ATCGAAGGGA TCGACACAGA 481 TCAGTATGTT TAAAACTGAC AATTTTTCTG TGGATGCAGG TTTATAGCTT CACTTCGAAA 541 TCGGCCGAAT TCAGGCCACT TGTAGTTCGA TAAGCTTGAT TTACCGCACG ATTTCAAAGA 601 ATCAAAAGCC ACCTTGACAC CGAATTATGA AGGTATCGAA ATGCTCGAGA ATA Predicted gene structure (within gDNA segment 6857 to 81): Exon 1 786 681 ( 106 n); cDNA 548 653 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E395324- 0.991 106 0.162 C PGS_C08HBa0060C12.1-_SGN-E395324- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 607 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 653 hqPGS_C08HBa0060C12.1-_SGN-E395324- (786 681) ******************************************************************************** EST sequence 236 -strand 436 n (File: SGN-E396750-) 1 CCCACAAGTC TGGAATGCCT CTGAAATTCA TTCGACAAGC GTCGGACTCA AAGAAGCTCG 61 TTAAGCCTGA CATGACATGA CTTGGCATTG ACTTTTTCGA GATACTATTT CTTAAAAAAT 121 TTCTTGCTTC TCTTAAAAAT TTCCCTTTTA TATTTCATCT GTTTTGGCAT AAGATATTTT 181 CTTATCTATC AAGAGTCGAG AAATCGGGAA ATCAACCGAG GACGTCAAGA CAAGGAGCAA 241 ACAATCGAAG GGATCGACAC AGATCAGTAT GTTTAAAACT GACAATTTTT CTGTGGATGC 301 AGGTTTATAG CTTCACTTCG AAATCGGCCG AATTCAGGCC ACTTGTAGTT CGATAAGCTT 361 GATTTACCGC ACGATTTCAA AGAATCAAAA GCCACCTTGA CACCGAATTA TGAAGGTATC 421 GAAATGCTCG AGAATA Predicted gene structure (within gDNA segment 4687 to 81): Exon 1 786 681 ( 106 n); cDNA 331 436 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E396750- 0.991 106 0.243 C PGS_C08HBa0060C12.1-_SGN-E396750- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 390 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 436 hqPGS_C08HBa0060C12.1-_SGN-E396750- (786 681) ******************************************************************************** EST sequence 237 -strand 657 n (File: SGN-E396661-) 1 GAAACTGGGA CAGAATTTTG AGAGGGACTC AAAAATTCTC CAGAAGGAAC CTTCTCTTCA 61 GCGGATCAAA CTAAAGACAT TTCGAATTTG CGACTGGGAC AGAATTTTTT AGAAGATCTC 121 AAAAATTCCG AGATCTGTTC GGTTACAATG GAAAGATGAA CAAGATACTA AACTGGGACA 181 GAAATTTTGA GGATGGCCTC AAAATTTCGT CATGGGACTT CCCCACAAGT CTGGAATGCC 241 TCTGAAATTC ATTCGACAAG CGTCGGACTC AAAGAAGCTC GTTAAGCCTG ACATGACATG 301 ACTTGGCATT GACTTTTTCG AGATACTATT TCTTAAAAAA TTTCTTGCTT CTCTTAAAAA 361 TTTCCCTTTT ATATTTCATC TGTTTTGGCA TAAGATATTT TCTTATCTAT CAAGAGTCGA 421 GAAATCGGGA AATCAACCGA GGACGTCAAG ACAAGGAGCA AACAATCGAA GGGATCGACA 481 CAGATCAGTA TGTTTAAAAC TGACAATTTT TCTGTGGATG CAGGTTTATA GCTTCACTTC 541 GAAATCGGCC GAATTCAGGC CACTTGTAGT TCGATAAGCT TGATTTACCG CACGATTTCA 601 AAGAATCAAA AGCCACCTTG ACACCGAATT ATGAAGGTAT CGAAATGCTC GAGAATA Predicted gene structure (within gDNA segment 6897 to 81): Exon 1 786 681 ( 106 n); cDNA 552 657 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E396661- 0.991 106 0.161 C PGS_C08HBa0060C12.1-_SGN-E396661- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 611 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 657 hqPGS_C08HBa0060C12.1-_SGN-E396661- (786 681) ******************************************************************************** EST sequence 247 -strand 593 n (File: SGN-E397114-) 1 ATCAAATTAA AGACATTTCG AATTTGCGAC TGGGACAGAA TTTTTTAGAA GATCTCAAAA 61 ATTCCGAGAT CTGTTCGGTT ACAATGGAAA GATGAACAAG ATACTAAACT GGGACAGAAA 121 TTTTGAGGAT GGCCTCAAAA TTTCGTCATG GGACTTCCCC ACAAGTCTGG AATGCCTCTG 181 AAATTCATTC GACAAGCGTC GGACTCAAAG AAGCTCGTTA AGCCTGACAT GACATGACTT 241 GGCATTGACT TTTTCGAGAT ACTATTTCTT AAAAAATTTC TTGCTTCTCT TAAAAATTTC 301 CCTTTTATAT TTCATCTGTT TTGGCATAAG ATATTTTCTT ATCTATCAAG AGTCGAGAAA 361 TCGGGAAATC AACCGAGGAC GTCAAGACAA GGAGCAAACA ATCGAAGGGA TCGACACAGA 421 TCAGTATGTT TAAAACTGAC AATTTTTCTG TGGATGCAGG TTTATAGCTT CACTTCGAAA 481 TCGGCCGAAT TCAGGCCACT TGTAGTTCGA TAAGCTTGAT TTACCGCACG ATTTCAAAGA 541 ATCAAAAGCC ACCTTGACAC CGAATTATGA AGGTATCGAA ATGCTCGAGA ATA Predicted gene structure (within gDNA segment 6857 to 81): Exon 1 786 681 ( 106 n); cDNA 488 593 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E397114- 0.991 106 0.179 C PGS_C08HBa0060C12.1-_SGN-E397114- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 547 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 593 hqPGS_C08HBa0060C12.1-_SGN-E397114- (786 681) ******************************************************************************** EST sequence 248 -strand 662 n (File: SGN-E390817-) 1 CAATAGAAAC GGGGACAGAA TTTTGAGAGG GACTCAAAAA TTCTCCAGAA GGAACNTTCT 61 CTTCAGCGGA TCAAACTAAA GACATTTCGA ATTTGCGACT GGGACAGAAT TTTTTAGAAG 121 ATCTCAAAAA TTCCGAGATC TGTTCGGTTA CAATGGAAAG ATGAACAAGA TACTAAACTG 181 GGACAGAAAT TTTGAGGATG GCCTCAAAAT TTCGTCATGG GACTTCCCCA CAAGTCTGGA 241 ATGCCTCTGA AATTCATTCG ACAAGCGTCG GACTCAAAGA AGCTCGTTAA GCCTGACATG 301 ACATGACTTG GCATTGACTT TTTCGAGATA CTATTTCTTA AAAAATTTCT TGCTTCTCTT 361 AAAAATTTCC CTTTTATATT TCATCTGTTT TGGCATAAGA TATTTTCTTA TCTATCAAGA 421 GTCGAGAAAT CGGGAAATCA ACCGAGGACG TCAAGACAAG GAGCAAACAA TCGAAGGGAT 481 CGACACAGAT CAGTATGTTT AAAACTGACA ATTTTTCTGT GGATGCAGGT TTATAGCTTC 541 ACTTCGAAAT CGGCCGAATT CAGGCCACTT GTAGTTCGAT AAGCTTGATT TACCGCACGA 601 TTTCAAAGAA TCAAAAGCCA CCTTGACACC GAATTATGAA GGTATCGAAA TGCTCGAGAA 661 TA Predicted gene structure (within gDNA segment 6947 to 81): Exon 1 786 681 ( 106 n); cDNA 557 662 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E390817- 0.991 106 0.160 C PGS_C08HBa0060C12.1-_SGN-E390817- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 616 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 662 hqPGS_C08HBa0060C12.1-_SGN-E390817- (786 681) ******************************************************************************** EST sequence 250 -strand 674 n (File: SGN-E397010-) 1 CCCCCCTTTC TCCAATAGAA AATGGACAGA AATTTTGAGA GGGACTCAAA AATTCTCCAG 61 AAGGAACCTT CTCTTCAGCG GATCAAACTA AAGACATTTC GAATTTGCGA CTGGGACAGA 121 ATTTTTTAGA AGATCTCAAA AATTCCGAGA TCTGTTCGGT TACAATGGAA AGATGAACAA 181 GATACTAAAC TGGGACAGAA ATTTTGAGGA TGGCCTCAAA ATTTCGTCAT GGGACTTCCC 241 CACAAGTCTG GAATGCCTCT GAAATTCATT CGACAAGCGT CGGACTCAAA GAAGCTCGTT 301 AAGCCTGACA TGACATGACT TGGCATTGAC TTTTTCGAGA TACTATTTCT TAAAAAATTT 361 CTTGCTTCTC TTAAAAATTT CCCTTTTATA TTTCATCTGT TTTGGCATAA GATATTTTCT 421 TATCTATCAA GAGTCGAGAA ATCGGGAAAT CAACCGAGGA CGTCAAGACA AGGAGCAAAC 481 AATCGAAGGG ATCGACACAG ATCAGTATGT TTAAAACTGA CAATTTTTCT GTGGATGCAG 541 GTTTATAGCT TCACTTCGAA ATCGGCCGAA TTCAGGCCAC TTGTAGTTCG ATAAGCTTGA 601 TTTACCGCAC GATTTCAAAG AATCAAAAGC CACCTTGACA CCGAATTATG AAGGTATCGA 661 AATGCTCGAG AATA Predicted gene structure (within gDNA segment 7067 to 81): Exon 1 786 681 ( 106 n); cDNA 569 674 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E397010- 0.991 106 0.157 C PGS_C08HBa0060C12.1-_SGN-E397010- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 628 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 674 hqPGS_C08HBa0060C12.1-_SGN-E397010- (786 681) ******************************************************************************** EST sequence 251 -strand 506 n (File: SGN-E397205-) 1 AAAGATGAAC AAGATACTAA ACTGGGACAG AAATTTTGAG GATGGCCTCA AAATTTCGTC 61 ATGGGACTTC CCCACAAGTC TGGAATGCCT CTGAAATTCA TTCGACAAGC GTCGGACTCA 121 AAGAAGCTCG TTAAGCCTGA CATGACATGA CTTGGCATTG ACTTTTTCGA GATACTATTT 181 CTTAAAAAAT TTCTTGCTTC TCTTAAAAAT TTCCCTTTTA TATTTCATCT GTTTTGGCAT 241 AAGATATTTT CTTATCTATC AAGAGTCGAG AAATCGGGAA ATCAACCGAG GACGTCAAGA 301 CAAGGAGCAA ACAATCGAAG GGATCGACAC AGATCAGTAT GTTTAAAACT GACAATTTTT 361 CTGTGGATGC AGGTTTATAG CTTCACTTCG AAATCGGCCG AATTCAGGCC ACTTGTAGTT 421 CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA GCCACCTTGA CACCGAATTA 481 TGAAGGTATC GAAATGCTCG AGAATA Predicted gene structure (within gDNA segment 5387 to 81): Exon 1 786 681 ( 106 n); cDNA 401 506 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E397205- 0.991 106 0.209 C PGS_C08HBa0060C12.1-_SGN-E397205- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 460 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 506 hqPGS_C08HBa0060C12.1-_SGN-E397205- (786 681) ******************************************************************************** EST sequence 255 -strand 439 n (File: SGN-E397267-) 1 CCCCCCCAAT TCTGGAATCC TTTTGAAATT CATTCGACCA GGCGTCGGAT TCAAAGAAGC 61 TCGTTAAGCC TGACATGACA CGACTGGGCA TTGACTTTTT CGAGATACTA TTTCTTAAAA 121 AATTTCTTGC TTCTCTTAAA AATTTCCCTT TTATATTTCA TCTGTTTTGG CATAAGATAT 181 TTTCTTATCT ATCAAGAGTC GAGAAATCGG GAAATCAACC GAGGACGTCA AGACAAGGAG 241 CAAACAATCG AAGGGATCGA CACAGATCAG TATGTTTAAA ACTGACAATT TTTCTGTGGA 301 TGCAGGTTTA TAGCTTCACT TCGAAATCGG CCGAATTCAG GCCACTTGTA GTTCGATAAG 361 CTTGATTTAC CGCACGATTT CAAAGAATCA AAAGCCACCT TGACACCGAA TTATGAAGGT 421 ATCGAAATGC TCGAGAATA Predicted gene structure (within gDNA segment 4717 to 81): Exon 1 786 681 ( 106 n); cDNA 334 439 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E397267- 0.991 106 0.241 C PGS_C08HBa0060C12.1-_SGN-E397267- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 393 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 439 hqPGS_C08HBa0060C12.1-_SGN-E397267- (786 681) ******************************************************************************** EST sequence 280 -strand 736 n (File: SGN-E396454-) 1 CTGCCTCAAC GGGATACGTA GGCGCCACAA GGGCTCGGGT CATATATCTC GTAAATTCTA 61 TTCCCCCCTT TCTACAATAG AAACTGGGAC AGAATTTTGA GAGGGACTCA AAAATTCTCC 121 AGAAGGAACC TTCTCTTCAG CGGATCAAAC TAAAGACATT TCGAATTTGC GACTGGGACA 181 GAATTTTTTA GAAGATCTCA AAAATTCCGA GATCTGTTCG GTTACAATGG AAAGATGAAC 241 AAGATACTAA ACTGGGACAG AAATTTTGAG GATGGCCTCA AAATTTCGTC ATGGGACTTC 301 CCCACAAGTC TGGAATGCCT CTGAAATTCA TTCGACAAGC GTCGGACTCA AAGAAGCTCG 361 TTAAGCCTGA CATGACATGA CTTGGCATTG ACTTTTTCGA GATACTATTT CTTAAAAAAT 421 TTCTTGCTTC TCTTAAAAAT TTCCCTTTTA TATTTCATCT GTTTTGGCAT AAGATATTTT 481 CTTATCTATC AAGAGTCGAG AAATCGGGAA ATCAACCGAG GACGTCAAGA CAAGGAGCAA 541 ACAATCGAAG GGATCGACAC AGATCAGTAT GTTTAAAACT GACAATTTTT CTGTGGATGC 601 AGGTTTATAG CTTCACTTCG AAATCGGCCG AATTCAGGCC ACTTGTAGTT CGATAAGCTT 661 GATTTACCGC ACGATTTCAA AGAATCAAAA GCCACCTTGA CACCGAATTA TGAAGGTATC 721 GAAATGCTCG AGAATA Predicted gene structure (within gDNA segment 7687 to 81): Exon 1 786 681 ( 106 n); cDNA 631 736 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E396454- 0.991 106 0.144 C PGS_C08HBa0060C12.1-_SGN-E396454- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 690 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 736 hqPGS_C08HBa0060C12.1-_SGN-E396454- (786 681) ******************************************************************************** EST sequence 281 -strand 729 n (File: SGN-E391362-) 1 CAACGGGATA CGTAGGCGCC ACAAGGGCTC GGTCATATAT CTCGTAAATT CTATTCCCCC 61 CTTTCTACAA TAGAAACTGG GACAGAATTT TGAGAGGGAC TCAAAAATTC TCCAGAAGGA 121 ACCTTCTCTT CAGCGGATCA AACTAAAGAC ATTTCGAATT TGCGACTGGG ACAGAATTTT 181 TTAGAAGATC TCAAAAATTC CGAGATCTGT TCGGTTACAA TGGAAAGATG AACAAGATAC 241 TAAACTGGGA CAGAAATTTT GAGGATGGCC TCAAAATTTC GTCATGGGAC TTCCCCACAA 301 GTCTGGAATG CCTCTGAAAT TCATTCGACA AGCGTCGGAC TCAAAGAAGC TCGTTAAGCC 361 TGACATGACA TGACTTGGCA TTGACTTTTT CGAGATACTA TTTCTTAAAA AATTTCTTGC 421 TTCTCTTAAA AATTTCCCTT TTATATTTCA TCTGTTTTGG CATAAGATAT TTTCTTATCT 481 ATCAAGAGTC GAGAAATCGG GAAATCAACC GAGGACGTCA AGACAAGGAG CAAACAATCG 541 AAGGGATCGA CACAGATCAG TATGTTTAAA ACTGACAATT TTTCTGTGGA TGCAGGTTTA 601 TAGCTTCACT TCGAAATCGG CCGAATTCAG GCCACTTGTA GTTCGATAAG CTTGATTTAC 661 CGCACGATTT CAAAGAATCA AAAGCCACCT TGACACCGAA TTATGAAGGT ATCGAAATGC 721 TCGAGAATA Predicted gene structure (within gDNA segment 7617 to 81): Exon 1 786 681 ( 106 n); cDNA 624 729 ( 106 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E391362- 0.991 106 0.145 C PGS_C08HBa0060C12.1-_SGN-E391362- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 683 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||||| |||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 729 hqPGS_C08HBa0060C12.1-_SGN-E391362- (786 681) ******************************************************************************** EST sequence 249 -strand 212 n (File: SGN-E396899-) 1 TCAAGACAAG GAGCAAACAA TTGAAGGGAT CGACACAGAT CAGTATGTTT AAAACTGACA 61 ATTTTTCTGT GGATGCAGGT TTATAGCTTC ACTTCGAAAT CGGCCGAATT CAGGCCACTT 121 GTAGTTCGAT AAGCTTGATT TACCGCACGA TTTCAAAGAA TCAAAAGCCA CCTTGACACC 181 GAATAGGGAA GGTATCGAAA TGCTCGAGAA TA Predicted gene structure (within gDNA segment 2447 to 81): Exon 1 786 681 ( 106 n); cDNA 107 212 ( 106 n); score: 0.962 MATCH C08HBa0060C12.1- SGN-E396899- 0.962 106 0.500 C PGS_C08HBa0060C12.1-_SGN-E396899- (786 681) Alignment (genomic DNA sequence = upper lines): AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAGGCC ACTTGTAGTT CGATAAGCTT GATTTACCGC ACGATTTCAA AGAATCAAAA 166 GCCACCTCGA CACCGAATTA TGAAGGTATC GAAATGCTCG AGAATA 681 ||||||| || |||||||| ||||||||| |||||||||| |||||| GCCACCTTGA CACCGAATAG GGAAGGTATC GAAATGCTCG AGAATA 212 hqPGS_C08HBa0060C12.1-_SGN-E396899- (786 681) ******************************************************************************** EST sequence 173 +strand 514 n (File: SGN-E319215+) 1 AAAAAAAGAG AGAGAAAGAA GAAAAGAGGG AGAAAGAGAA AAGAAGAAAG AAGAGAGAAA 61 GAAAGGGATG GTTTTTGGAG AGAATTTTTT TTTTTTACAT CTTGTGATAG AAATATAAAG 121 AATTATTGAA AGAGTTTATT CATAGGAAGA TTTTACAATA GTTTAAGCAC ACCTATATAT 181 ATTTATTGAA GTTGAATTAA AAACAGAACG ATTGCGGGGT TTTTGATTAT CATTTGAATT 241 CGAAGTTGTG TAGTGGAAGG TCATCCCCTT GCTCGTTTCG TCTCCAGCTC GCTGCCCCGA 301 AGAAGGTGAA ATTCTTTTTT TTTCTTTCTT CTTTTTAGAT GTTGTCATTC CACCTTGCTA 361 ATATTTTTTT TTGTTTTGTT TTCTTGTGTG ACATCGATTC GAGTCCACTT TGGATTCCAT 421 TCTTGCATTC CTCGTTGAGC CATAAAGGCT CAAAACACTT TTCCCGAGTC AGACAACCCC 481 TGAAAGGATG TACAGGTGGC AAGCAAAACC ATTG Predicted gene structure (within gDNA segment 1 to 3711): Exon 1 1980 2027 ( 48 n); cDNA 256 305 ( 50 n); score: 0.729 Intron 1 2028 2624 ( 597 n); Pd: 1.000 (s: 0.73), Pa: 0.000 (s: 0) Exon 2 2625 2659 ( 35 n); cDNA 306 340 ( 35 n); score: 0.700 Intron 2 2660 2749 ( 90 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62) Exon 3 2750 2927 ( 178 n); cDNA 341 511 ( 171 n); score: 0.722 MATCH C08HBa0060C12.1+ SGN-E319215+ 0.722 261 0.508 C PGS_C08HBa0060C12.1+_SGN-E319215+ (1980 2027,2625 2659,2750 2927) Alignment (genomic DNA sequence = upper lines): GAAGTTCTTG CTCT-GCTCG -ATCGTCTCC AGTTCGCTGC TCCGAAAAAG GTACATTTTC 2037 |||| || | | || ||||| |||||||| || ||||||| ||||| ||| GAAGGTCATC CCCTTGCTCG TTTCGTCTCC AGCTCGCTGC CCCGAAGAAG .......... 305 CAGTTCTTTA TCAGTTTTCT TTATAGGTTT CGAATCTTGG TTCGTGTCGC TGTGAATATG 2097 .......... .......... .......... .......... .......... .......... 305 AGATGTTATA TCTGTTAGTT TTGCTCGATT TCGAAATATA TTGCGCGTTA TGATTCTGTC 2157 .......... .......... .......... .......... .......... .......... 305 TGGTTATGCC TGCTGGTTTC GTATTACTTT CTGTTCTTTC GCCTTCTTCT CTTCCTCTGA 2217 .......... .......... .......... .......... .......... .......... 305 AGGTCTCCAG TAAATTTGTA AAGTGCTGTA GCCTTGTTTA CGTTATTTGC TTCTTGTGAA 2277 .......... .......... .......... .......... .......... .......... 305 GTCATTTTAT GACCTGTTTA TATGCATTCT TTGCTGCTTA AAGTGTGCCA TTCCTTATAC 2337 .......... .......... .......... .......... .......... .......... 305 GTTCATCTAG TCTAAACTTT CATTTGTCCC TTTCTTCGAG TTATTTGTAT GGGTTGGAAT 2397 .......... .......... .......... .......... .......... .......... 305 GGATCAAATG TTTAGTTTGT TTTCGCAGTT GTTAAACATA CTGTTTAGAA GTCGAGTTTG 2457 .......... .......... .......... .......... .......... .......... 305 GGTCTTATGA TCATGTCACA TTTACAAAGC TAGAGGAAGC AATGGTAGTT CATTTGGACT 2517 .......... .......... .......... .......... .......... .......... 305 ATGACGTCAT GTCTCAACTT GCTTCGCATT TGGTATTACT AACTATGCTT AAAATTGGCG 2577 .......... .......... .......... .......... .......... .......... 305 GGAGTGTGTG TCCAAGTATT CATGTCACTG CCATCTCTTT ACTTGTTGTG -AATTCTTGT 2636 ||| ||||||| | .......... .......... .......... .......... .......GTG AAATTCTTTT 318 TTTATTTTTA GCCTTATTTG GATATGTTTT TGAAGTCATT TGTCTCCCCC TCTAATTCAT 2696 ||| | ||| ||| ||| ||| TTTTTCTTTC TTCTT-TTTA GAT....... .......... .......... .......... 340 ATCTCCAAGT AGTTCATTTT TATCCCCGTT TTGTTCAAGA TGCTTGCTAT TAGTTTATCG 2756 || || .......... .......... .......... .......... .......... ...GTTGTCA 347 TT-CAAGGTG CTAATTCTCT TTTGTTTGTT TGATTGCATG TGAAAACTAT TCTCGAGTCC 2815 || || || |||| | | | ||| || || || || | || || | | |||||||| TTCCACCTTG CTAA-TATTT TTTTTTGTTT TGTTTTCTTG TGTGACATCG ATTCGAGTCC 406 TCATGGACCT CACTCCGATT CCTTGAACCT TCTCGTTGAG CCATAAAGGC TCAAAACACT 2875 | | | | ||| ||| |||| | | ||||||||| |||||||||| |||||||||| ACTTTG---- GATTCC-ATT -CTTGCA-TT CCTCGTTGAG CCATAAAGGC TCAAAACACT 459 TTTTCCGAGT CAGCCAACCC CTGAAAGGAT GTACAGCATC GAAAGAAAAC CA 2927 ||| |||||| ||| |||||| |||||||||| |||||| || ||||| || TTTCCCGAGT CAGACAACCC CTGAAAGGAT GTACAGGTGG CAAGCAAAAC CA 511 hqPGS_C08HBa0060C12.1+_SGN-E319215+ (1980 2027,2625 2659,2750 2927) ******************************************************************************** EST sequence 147 +strand 577 n (File: SGN-E392751+) 1 AAACCCTCCT CGAGTCCTCA TGGACTTTAT TCCATCTCAC TACACTTCCT CATCGAGCCA 61 TAAAGGCTCA GAATATCTTC TTCGAGTCAT AGAACCCTCT CAAAAGGTGT ACAGGTCAGA 121 AGAACAGCAG AAAATGCACT GCTGGAGATT GATTCTGGTT CACCAGAACT TGGAAAATTG 181 CTGGAAATTA CAGTTGCATA TATTGAGAAG CTGTATACCA ACCATATACA CAGTTTATAC 241 CGTGATATAC ATATCAAAAG ATGTACAGGA GGCCTAGTTC GAAACCTGGG TTGATGGCAG 301 TAAAGTACGC TGCTGAAAAA GAATTTTTCA ACTCTCGAAA GTTGAAAAAC AGGCTGATAT 361 ACAGCCTGTA TACACTGATA TACAGAAACG TTATACCTTA AATAGGTGTA AAAATATGAA 421 TGGCAGCAGG CGTGCGAAAA TTCAAACTTC ATGAAGATCG AAGGTGCTCG AGGAAGGAGT 481 ATTAGAAGAT TTTTTTTATT TGTTTATTAA GTTGTATTTA TTTTGGGCAT AAGCCCTTGT 541 CATTTTTACT TTCCGTATAT TTAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 1 to 5674): Exon 1 2221 2244 ( 24 n); cDNA 160 182 ( 23 n); score: 0.750 Intron 1 2245 2467 ( 223 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 2468 2495 ( 28 n); cDNA 183 210 ( 28 n); score: 0.536 Intron 2 2496 2978 ( 483 n); Pd: 0.891 (s: 0), Pa: 0.000 (s: 0.66) Exon 3 2979 3193 ( 215 n); cDNA 211 426 ( 216 n); score: 0.795 PPA cDNA 563 577 MATCH C08HBa0060C12.1+ SGN-E392751+ 0.795 267 0.463 C PGS_C08HBa0060C12.1+_SGN-E392751+ (2221 2244,2468 2495,2979 3193) Alignment (genomic DNA sequence = upper lines): TCTCCAGTAA ATTTGTAAAG TGCTGTAGCC TTGTTTACGT TATTTGCTTC TTGTGAAGTC 2280 || |||| || || | ||| |||| TCACCAG-AA CTTGGAAAAT TGCT...... .......... .......... .......... 182 ATTTTATGAC CTGTTTATAT GCATTCTTTG CTGCTTAAAG TGTGCCATTC CTTATACGTT 2340 .......... .......... .......... .......... .......... .......... 182 CATCTAGTCT AAACTTTCAT TTGTCCCTTT CTTCGAGTTA TTTGTATGGG TTGGAATGGA 2400 .......... .......... .......... .......... .......... .......... 182 TCAAATGTTT AGTTTGTTTT CGCAGTTGTT AAACATACTG TTTAGAAGTC GAGTTTGGGT 2460 .......... .......... .......... .......... .......... .......... 182 CTTATGATCA TGTCACATTT ACAAAGCTAG AGGAAGCAAT GGTAGTTCAT TTGGACTATG 2520 | | ||| || || | | | || | .......GGA AATTACAGTT GCATATATTG AGAAG..... .......... .......... 210 ACGTCATGTC TCAACTTGCT TCGCATTTGG TATTACTAAC TATGCTTAAA ATTGGCGGGA 2580 .......... .......... .......... .......... .......... .......... 210 GTGTGTGTCC AAGTATTCAT GTCACTGCCA TCTCTTTACT TGTTGTGAAT TCTTGTTTTA 2640 .......... .......... .......... .......... .......... .......... 210 TTTTTAGCCT TATTTGGATA TGTTTTTGAA GTCATTTGTC TCCCCCTCTA ATTCATATCT 2700 .......... .......... .......... .......... .......... .......... 210 CCAAGTAGTT CATTTTTATC CCCGTTTTGT TCAAGATGCT TGCTATTAGT TTATCGTTCA 2760 .......... .......... .......... .......... .......... .......... 210 AGGTGCTAAT TCTCTTTTGT TTGTTTGATT GCATGTGAAA ACTATTCTCG AGTCCTCATG 2820 .......... .......... .......... .......... .......... .......... 210 GACCTCACTC CGATTCCTTG AACCTTCTCG TTGAGCCATA AAGGCTCAAA ACACTTTTTC 2880 .......... .......... .......... .......... .......... .......... 210 CGAGTCAGCC AACCCCTGAA AGGATGTACA GCATCGAAAG AAAACCAGCA GAAACTGCTG 2940 .......... .......... .......... .......... .......... .......... 210 GAAAAGTTGT TGCAGGGATT TGAAGAACAT GTATACAGCA GTATACATGT TTTATACATC 3000 | |||||| |||||| .......... .......... .......... ........CT GTATACCAAC CATATACACA 232 TGTTATACGC TGATATACAG GTCGAAATGT GCACAGGAGG CCTAATCCGA AATCTGGGTC 3060 |||||| ||||||||| || ||| | | |||||||| |||| | ||| || |||||| GTTTATACCG TGATATACAT ATCAAAAGAT GTACAGGAGG CCTAGTTCGA AACCTGGGTT 292 GATGGCAGTG AAAATACGCT GCTTAAAATG AA-TTTTCAA CTCTCGAAAG TCGAAAAACA 3119 ||||||||| ||| |||||| ||| |||| | || ||||||| |||||||||| | |||||||| GATGGCAGT- AAAGTACGCT GCTGAAAAAG AATTTTTCAA CTCTCGAAAG TTGAAAAACA 351 GGCTGATATA CAGTCTGTAT ACACTGATAT ACAGACACGA TATAATATAA ATGTGT-AAA 3178 |||||||||| ||| |||||| |||||||||| ||||| ||| |||| ||| || || || GGCTGATATA CAGCCTGTAT ACACTGATAT ACAGAAACGT TATACCTTAA ATAGGTGTAA 411 AAATGTGATT GGCAG 3193 |||| ||| | ||||| AAATATGAAT GGCAG 426 hqPGS_C08HBa0060C12.1+_SGN-E392751+ (2221 2244,2468 2495,2979 3193) ******************************************************************************** EST sequence 244 +strand 572 n (File: SGN-E240512+) 1 AACCCTCCTC GAGTCCTCAT GGACTTTATT CCATCTCACT ACACTTCCTC ATCGAGCCAT 61 AAAGGCTCAG AATATCTTCT TCGAGTCATA GAACCCTCTC AAAAGGTGTA CAGGTCAGAA 121 GAACAGCAGA AAATGCACTG CTGGAGATTG ATTCTGGTTC ACCAGAACTT GGAAAATTGC 181 TGGAAATTAC AGTTGCATAT ATTGAGAAGC TGTATACCAA CCATATACAC AGTTTATACC 241 GTGATATACA TATCAAAAGA TGTACAGGAG GCCTAGTTCG AAACCTGGGT TGATGGCAGT 301 AAAGTACGCT GCTGAAAAAG AATTTTTCAA CTCTCGAAAG TTGAAAAACA GGCTGATATA 361 CAGCCTGTAT ACACTGATAT ACAGAAACGT TATACCTTAA ATAGGTGTAA AAATATGAAT 421 GGCAGCAGGC GTGCGAAAAT TCAAACTTCA TGAAGATCGA AGGTGCTCGA GGAAGGAGTA 481 TTAAAAGATT TTTTTATTTG TTTATTAAGT GGAATTATTT TGGGCATAAG CCCTTGTCAT 541 TTTACTTTCC GGATATTTAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 1 to 5634): Exon 1 2221 2244 ( 24 n); cDNA 159 181 ( 23 n); score: 0.750 Intron 1 2245 2467 ( 223 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 2468 2495 ( 28 n); cDNA 182 209 ( 28 n); score: 0.536 Intron 2 2496 2978 ( 483 n); Pd: 0.891 (s: 0), Pa: 0.000 (s: 0.66) Exon 3 2979 3193 ( 215 n); cDNA 210 425 ( 216 n); score: 0.795 PPA cDNA 559 572 MATCH C08HBa0060C12.1+ SGN-E240512+ 0.795 267 0.467 C PGS_C08HBa0060C12.1+_SGN-E240512+ (2221 2244,2468 2495,2979 3193) Alignment (genomic DNA sequence = upper lines): TCTCCAGTAA ATTTGTAAAG TGCTGTAGCC TTGTTTACGT TATTTGCTTC TTGTGAAGTC 2280 || |||| || || | ||| |||| TCACCAG-AA CTTGGAAAAT TGCT...... .......... .......... .......... 181 ATTTTATGAC CTGTTTATAT GCATTCTTTG CTGCTTAAAG TGTGCCATTC CTTATACGTT 2340 .......... .......... .......... .......... .......... .......... 181 CATCTAGTCT AAACTTTCAT TTGTCCCTTT CTTCGAGTTA TTTGTATGGG TTGGAATGGA 2400 .......... .......... .......... .......... .......... .......... 181 TCAAATGTTT AGTTTGTTTT CGCAGTTGTT AAACATACTG TTTAGAAGTC GAGTTTGGGT 2460 .......... .......... .......... .......... .......... .......... 181 CTTATGATCA TGTCACATTT ACAAAGCTAG AGGAAGCAAT GGTAGTTCAT TTGGACTATG 2520 | | ||| || || | | | || | .......GGA AATTACAGTT GCATATATTG AGAAG..... .......... .......... 209 ACGTCATGTC TCAACTTGCT TCGCATTTGG TATTACTAAC TATGCTTAAA ATTGGCGGGA 2580 .......... .......... .......... .......... .......... .......... 209 GTGTGTGTCC AAGTATTCAT GTCACTGCCA TCTCTTTACT TGTTGTGAAT TCTTGTTTTA 2640 .......... .......... .......... .......... .......... .......... 209 TTTTTAGCCT TATTTGGATA TGTTTTTGAA GTCATTTGTC TCCCCCTCTA ATTCATATCT 2700 .......... .......... .......... .......... .......... .......... 209 CCAAGTAGTT CATTTTTATC CCCGTTTTGT TCAAGATGCT TGCTATTAGT TTATCGTTCA 2760 .......... .......... .......... .......... .......... .......... 209 AGGTGCTAAT TCTCTTTTGT TTGTTTGATT GCATGTGAAA ACTATTCTCG AGTCCTCATG 2820 .......... .......... .......... .......... .......... .......... 209 GACCTCACTC CGATTCCTTG AACCTTCTCG TTGAGCCATA AAGGCTCAAA ACACTTTTTC 2880 .......... .......... .......... .......... .......... .......... 209 CGAGTCAGCC AACCCCTGAA AGGATGTACA GCATCGAAAG AAAACCAGCA GAAACTGCTG 2940 .......... .......... .......... .......... .......... .......... 209 GAAAAGTTGT TGCAGGGATT TGAAGAACAT GTATACAGCA GTATACATGT TTTATACATC 3000 | |||||| |||||| .......... .......... .......... ........CT GTATACCAAC CATATACACA 231 TGTTATACGC TGATATACAG GTCGAAATGT GCACAGGAGG CCTAATCCGA AATCTGGGTC 3060 |||||| ||||||||| || ||| | | |||||||| |||| | ||| || |||||| GTTTATACCG TGATATACAT ATCAAAAGAT GTACAGGAGG CCTAGTTCGA AACCTGGGTT 291 GATGGCAGTG AAAATACGCT GCTTAAAATG AA-TTTTCAA CTCTCGAAAG TCGAAAAACA 3119 ||||||||| ||| |||||| ||| |||| | || ||||||| |||||||||| | |||||||| GATGGCAGT- AAAGTACGCT GCTGAAAAAG AATTTTTCAA CTCTCGAAAG TTGAAAAACA 350 GGCTGATATA CAGTCTGTAT ACACTGATAT ACAGACACGA TATAATATAA ATGTGT-AAA 3178 |||||||||| ||| |||||| |||||||||| ||||| ||| |||| ||| || || || GGCTGATATA CAGCCTGTAT ACACTGATAT ACAGAAACGT TATACCTTAA ATAGGTGTAA 410 AAATGTGATT GGCAG 3193 |||| ||| | ||||| AAATATGAAT GGCAG 425 hqPGS_C08HBa0060C12.1+_SGN-E240512+ (2221 2244,2468 2495,2979 3193) ******************************************************************************** EST sequence 364 -strand 576 n (File: SGN-E392856-) 1 AAACCCTCCT CGAGTCCTCA TGGACTTTAT TCCATCTCAC TACACTTCCT CATCGAGCCA 61 TAAAGGCTCA GAATATCTTC TTCGAGTCAT AGAACCCTCT CAAAAGGTGT ACAGGTCAGA 121 AGAACAGCAG AAAATGCACT GCTGGAGATT GATTCTGGTT CACCAGAACT TGGAAAATTG 181 CTGGAAATTA CAGTTGCATA TATTGAGAAG CTGTATACCA ACCATATACA CAGTTTATAC 241 CGTGATATAC ATATCAAAAG ATGTACAGGA GGCCTAGTTC GAAACCTGGG TTGATGGCAG 301 TAAAGTACGC TGCTGAAAAA GAATTTTTCA ACTCTCGAAA GTTGAAAAAC AGGCTGATAT 361 ACAGCCTGTA TACACTGATA TACAGAAACG TTATACCTTA AATAGGTGTA AAAATATGAA 421 TGGCAGCAGG CGTGCGAAAA TTCAAACTTC ATGAAGATCG AAGGTGCTCG AGGAAGGAGT 481 ATTAGAAGAT TTTTTTTATT TGTTTATTAA GTTGTATTTA TTTTGGGCAT AAGCCCTTGT 541 CATTTTTACT TTCCGTATAT TAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 1 to 5654): Exon 1 2221 2244 ( 24 n); cDNA 160 182 ( 23 n); score: 0.750 Intron 1 2245 2467 ( 223 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 2468 2495 ( 28 n); cDNA 183 210 ( 28 n); score: 0.536 Intron 2 2496 2978 ( 483 n); Pd: 0.891 (s: 0), Pa: 0.000 (s: 0.66) Exon 3 2979 3193 ( 215 n); cDNA 211 426 ( 216 n); score: 0.795 PPA cDNA 562 576 MATCH C08HBa0060C12.1+ SGN-E392856- 0.795 267 0.464 C PGS_C08HBa0060C12.1+_SGN-E392856- (2221 2244,2468 2495,2979 3193) Alignment (genomic DNA sequence = upper lines): TCTCCAGTAA ATTTGTAAAG TGCTGTAGCC TTGTTTACGT TATTTGCTTC TTGTGAAGTC 2280 || |||| || || | ||| |||| TCACCAG-AA CTTGGAAAAT TGCT...... .......... .......... .......... 182 ATTTTATGAC CTGTTTATAT GCATTCTTTG CTGCTTAAAG TGTGCCATTC CTTATACGTT 2340 .......... .......... .......... .......... .......... .......... 182 CATCTAGTCT AAACTTTCAT TTGTCCCTTT CTTCGAGTTA TTTGTATGGG TTGGAATGGA 2400 .......... .......... .......... .......... .......... .......... 182 TCAAATGTTT AGTTTGTTTT CGCAGTTGTT AAACATACTG TTTAGAAGTC GAGTTTGGGT 2460 .......... .......... .......... .......... .......... .......... 182 CTTATGATCA TGTCACATTT ACAAAGCTAG AGGAAGCAAT GGTAGTTCAT TTGGACTATG 2520 | | ||| || || | | | || | .......GGA AATTACAGTT GCATATATTG AGAAG..... .......... .......... 210 ACGTCATGTC TCAACTTGCT TCGCATTTGG TATTACTAAC TATGCTTAAA ATTGGCGGGA 2580 .......... .......... .......... .......... .......... .......... 210 GTGTGTGTCC AAGTATTCAT GTCACTGCCA TCTCTTTACT TGTTGTGAAT TCTTGTTTTA 2640 .......... .......... .......... .......... .......... .......... 210 TTTTTAGCCT TATTTGGATA TGTTTTTGAA GTCATTTGTC TCCCCCTCTA ATTCATATCT 2700 .......... .......... .......... .......... .......... .......... 210 CCAAGTAGTT CATTTTTATC CCCGTTTTGT TCAAGATGCT TGCTATTAGT TTATCGTTCA 2760 .......... .......... .......... .......... .......... .......... 210 AGGTGCTAAT TCTCTTTTGT TTGTTTGATT GCATGTGAAA ACTATTCTCG AGTCCTCATG 2820 .......... .......... .......... .......... .......... .......... 210 GACCTCACTC CGATTCCTTG AACCTTCTCG TTGAGCCATA AAGGCTCAAA ACACTTTTTC 2880 .......... .......... .......... .......... .......... .......... 210 CGAGTCAGCC AACCCCTGAA AGGATGTACA GCATCGAAAG AAAACCAGCA GAAACTGCTG 2940 .......... .......... .......... .......... .......... .......... 210 GAAAAGTTGT TGCAGGGATT TGAAGAACAT GTATACAGCA GTATACATGT TTTATACATC 3000 | |||||| |||||| .......... .......... .......... ........CT GTATACCAAC CATATACACA 232 TGTTATACGC TGATATACAG GTCGAAATGT GCACAGGAGG CCTAATCCGA AATCTGGGTC 3060 |||||| ||||||||| || ||| | | |||||||| |||| | ||| || |||||| GTTTATACCG TGATATACAT ATCAAAAGAT GTACAGGAGG CCTAGTTCGA AACCTGGGTT 292 GATGGCAGTG AAAATACGCT GCTTAAAATG AA-TTTTCAA CTCTCGAAAG TCGAAAAACA 3119 ||||||||| ||| |||||| ||| |||| | || ||||||| |||||||||| | |||||||| GATGGCAGT- AAAGTACGCT GCTGAAAAAG AATTTTTCAA CTCTCGAAAG TTGAAAAACA 351 GGCTGATATA CAGTCTGTAT ACACTGATAT ACAGACACGA TATAATATAA ATGTGT-AAA 3178 |||||||||| ||| |||||| |||||||||| ||||| ||| |||| ||| || || || GGCTGATATA CAGCCTGTAT ACACTGATAT ACAGAAACGT TATACCTTAA ATAGGTGTAA 411 AAATGTGATT GGCAG 3193 |||| ||| | ||||| AAATATGAAT GGCAG 426 hqPGS_C08HBa0060C12.1+_SGN-E392856- (2221 2244,2468 2495,2979 3193) ******************************************************************************** EST sequence 405 -strand 691 n (File: SGN-E549354-) 1 ATTTCTCCAA GTAGTTCATC TTTTATCTTC GTCTTGTTCA AGACACTTTC TATTAGTTTA 61 TCGCTTTAAG TGCTAATCTT TTGTATGTTT TATTGCATGT GAAACCCTCC TCGAGTCCTC 121 ATGGACTTTA TTCCATCTCA CTACACTTCC TCATCGAGCC ATAAAGGCTC AGAATATCTT 181 CTTCGAGTCG TAGAACCCTC TCAAAAGGTG TACAGGTCGG AAGAACAGCA GAAAATGCAC 241 TGCTGGAGAT TGATTCTGGT TCACCAGAAC TTGGAAAATT GCTGGAAATT ACAGTTGCAT 301 ATATTGAGAA GCTGTATACC AACCATATAC ACAGTTTATC CCGTGATATA CAGATCAAAA 361 GATGTACAGG GGATCAAATT CAAAACCTGG GTTGATGGCA GTGAAGAACG CTGCTGAAAA 421 AGAATTTTTC AACTCTCGAA AGTTGAAAAA CAGGCTGATA TACAGCCTGT ATACACTGAT 481 ATACAGAAAC ATTATCCCTT AAATAGGTGT AAAAATATGA ATGGTAGCAG GCGTACGAAA 541 ATTCGAACTC CATGAAGATC AAAGGTGCTC GAGGAAGGAG TATTAGAAGA TTTTTTTTTA 601 TTTATTATGT TGTATTTATT TTGGGCATAA GCCCTTGTCA TTTTTACTTT CCTTATATTT 661 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 1 to 5794): Exon 1 2221 2244 ( 24 n); cDNA 261 283 ( 23 n); score: 0.750 Intron 1 2245 2467 ( 223 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 2468 2495 ( 28 n); cDNA 284 311 ( 28 n); score: 0.536 Intron 2 2496 2978 ( 483 n); Pd: 0.891 (s: 0), Pa: 0.000 (s: 0.66) Exon 3 2979 3193 ( 215 n); cDNA 312 527 ( 216 n); score: 0.763 PPA cDNA 661 691 MATCH C08HBa0060C12.1+ SGN-E549354- 0.763 267 0.386 C PGS_C08HBa0060C12.1+_SGN-E549354- (2221 2244,2468 2495,2979 3193) Alignment (genomic DNA sequence = upper lines): TCTCCAGTAA ATTTGTAAAG TGCTGTAGCC TTGTTTACGT TATTTGCTTC TTGTGAAGTC 2280 || |||| || || | ||| |||| TCACCAG-AA CTTGGAAAAT TGCT...... .......... .......... .......... 283 ATTTTATGAC CTGTTTATAT GCATTCTTTG CTGCTTAAAG TGTGCCATTC CTTATACGTT 2340 .......... .......... .......... .......... .......... .......... 283 CATCTAGTCT AAACTTTCAT TTGTCCCTTT CTTCGAGTTA TTTGTATGGG TTGGAATGGA 2400 .......... .......... .......... .......... .......... .......... 283 TCAAATGTTT AGTTTGTTTT CGCAGTTGTT AAACATACTG TTTAGAAGTC GAGTTTGGGT 2460 .......... .......... .......... .......... .......... .......... 283 CTTATGATCA TGTCACATTT ACAAAGCTAG AGGAAGCAAT GGTAGTTCAT TTGGACTATG 2520 | | ||| || || | | | || | .......GGA AATTACAGTT GCATATATTG AGAAG..... .......... .......... 311 ACGTCATGTC TCAACTTGCT TCGCATTTGG TATTACTAAC TATGCTTAAA ATTGGCGGGA 2580 .......... .......... .......... .......... .......... .......... 311 GTGTGTGTCC AAGTATTCAT GTCACTGCCA TCTCTTTACT TGTTGTGAAT TCTTGTTTTA 2640 .......... .......... .......... .......... .......... .......... 311 TTTTTAGCCT TATTTGGATA TGTTTTTGAA GTCATTTGTC TCCCCCTCTA ATTCATATCT 2700 .......... .......... .......... .......... .......... .......... 311 CCAAGTAGTT CATTTTTATC CCCGTTTTGT TCAAGATGCT TGCTATTAGT TTATCGTTCA 2760 .......... .......... .......... .......... .......... .......... 311 AGGTGCTAAT TCTCTTTTGT TTGTTTGATT GCATGTGAAA ACTATTCTCG AGTCCTCATG 2820 .......... .......... .......... .......... .......... .......... 311 GACCTCACTC CGATTCCTTG AACCTTCTCG TTGAGCCATA AAGGCTCAAA ACACTTTTTC 2880 .......... .......... .......... .......... .......... .......... 311 CGAGTCAGCC AACCCCTGAA AGGATGTACA GCATCGAAAG AAAACCAGCA GAAACTGCTG 2940 .......... .......... .......... .......... .......... .......... 311 GAAAAGTTGT TGCAGGGATT TGAAGAACAT GTATACAGCA GTATACATGT TTTATACATC 3000 | |||||| |||||| .......... .......... .......... ........CT GTATACCAAC CATATACACA 333 TGTTATACGC TGATATACAG GTCGAAATGT GCACAGGAGG CCTAATCCGA AATCTGGGTC 3060 |||| | |||||||||| || ||| | | ||||| | | ||| | | || |||||| GTTTATCCCG TGATATACAG ATCAAAAGAT GTACAGGGGA TCAAATTCAA AACCTGGGTT 393 GATGGCAGTG AAAATACGCT GCTTAAAATG AA-TTTTCAA CTCTCGAAAG TCGAAAAACA 3119 |||||||||| || | ||||| ||| |||| | || ||||||| |||||||||| | |||||||| GATGGCAGTG AAGA-ACGCT GCTGAAAAAG AATTTTTCAA CTCTCGAAAG TTGAAAAACA 452 GGCTGATATA CAGTCTGTAT ACACTGATAT ACAGACACGA TATAATATAA ATGTGT-AAA 3178 |||||||||| ||| |||||| |||||||||| ||||| || ||| ||| || || || GGCTGATATA CAGCCTGTAT ACACTGATAT ACAGAAACAT TATCCCTTAA ATAGGTGTAA 512 AAATGTGATT GGCAG 3193 |||| ||| | || || AAATATGAAT GGTAG 527 hqPGS_C08HBa0060C12.1+_SGN-E549354- (2221 2244,2468 2495,2979 3193) ******************************************************************************** EST sequence 347 -strand 705 n (File: SGN-E550243-) 1 AGAAATTGAT TACAGGTTCA TCAGAACCTG AAAGTTGCTG GAAATTACAG TGCATGTGTT 61 GAAGGAGCTG TATACCAGCT ATATACATAG TTTATATCAT GATATACATG TAAAAAATGC 121 ACAGGGGATC AAAATTCGAA ATCTGGGTTG ATAGCAGGGA AAATACGCTG CTGAAAAGGG 181 ACTTTAAGCT TTCAAAAGTT GAAAAATAGG CCTATATACA ACCTGTATAC ACTGATATAC 241 AGAGGGTCTA TACTATAAGT ATGTATAAAA AATAAGAATT GCAGGTTAAC GTACAAGGAC 301 TCCTAATTTG AGTAAAATAC AGGAATAGGC AATAAATACG TGGGTACAAA TGTGCAGAAA 361 TAATATGGCA AATACAAGGG AATAGCGAGG AATGCATTTT TAAACAATAT GCAGGGCTCA 421 AAAAGTCCAA AATGGATTGA ATATACATTG TATACAACAG TATACATCAT TTGTATACCT 481 TGACTCTTTC AGGAAATGGG TCAGGGCCCT TTCAGCAAAA GTTTTTTAAT AGGCCCAAAG 541 GCCAATTTCT TTTGGAGGAT TTGAATTGAT GAAAAGGGCC CAAACATGAA TAGTTTAATA 601 TAGGATAGGT GGGTCAAAGC CTAAATTTGA ATGAATTTGG GCAATCAAGC CCAAGTTCAA 661 ATTTTTTTCC TCTTTATTTA TTATTTGTTT GAATTAACTA ATTTT Predicted gene structure (within gDNA segment 1 to 4363): Exon 1 2977 3262 ( 286 n); cDNA 66 353 ( 288 n); score: 0.712 Intron 1 3263 3333 ( 71 n); Pd: 0.000 (s: 0.58), Pa: 0.989 (s: 0.60) Exon 2 3334 3679 ( 346 n); cDNA 354 702 ( 349 n); score: 0.637 MATCH C08HBa0060C12.1+ SGN-E550243- 0.671 632 0.896 C PGS_C08HBa0060C12.1+_SGN-E550243- (2977 3262,3334 3679) Alignment (genomic DNA sequence = upper lines): AGCAGTATAC ATGTTTTATA CATCTGTTAT ACGCTGATAT ACAGGTCGAA ATGTGCACAG 3036 ||| |||||| | | |||| ||| |||| | |||||| ||| || || | ||||||| AGCTGTATAC CAGCTATATA CATAGTTTAT ATCATGATAT ACATGT-AAA AAATGCACAG 124 GAG-GCCTAA TCCGAAATCT GGGTCGATGG CAGTGAAAAT ACGCTGCTTA AAATGAATTT 3095 | | | || | |||||||| |||| ||| | ||| |||||| |||||||| | ||| | | || GGGATCAAAA TTCGAAATCT GGGTTGATAG CAGGGAAAAT ACGCTGCTGA AAAGGGACTT 184 TCAACTCTCG AAAGTCGAAA AACAGGCTGA TATACAGTCT GTATACACTG ATATACAGAC 3155 | | || || ||||| |||| || |||| | |||||| || |||||||||| ||||||||| TAAGCTTTCA AAAGTTGAAA AATAGGCCTA TATACAACCT GTATACACTG ATATACAGAG 244 ACGATATAAT ATAA--ATGT GTAAAAAATG TGATTGGCAG GGGAACGTAG AGGGACGCCT 3213 |||| | |||| |||| |||||||| || | |||| | |||||| | |||| ||| GGTCTATACT ATAAGTATGT ATAAAAAATA AGAATTGCAG GTTAACGTAC AAGGACTCCT 304 ATTCTAATTA AAATTCGGAA TTAGGCAAAC AATGCGGACG TAGGGTGCAG CCCGTATACA 3273 | | | | || |||| | | | ||||||| ||| || | || AATTTGAGTA AAATACAGGA ATAGGCAATA AATACGTGGG TACAAATGT. .......... 353 TTAGTATACA TTATCGGGCG ACGATATACA CTTGTTAAGT AAGTTTTAAA AATTGTACAG 3333 .......... .......... .......... .......... .......... .......... 353 GTACAAATAC GCAGGGCAAT AC-AGGGAAA AGTAGCGGAA AATATATATT CAAATAGGTG 3392 | | ||||| || ||| || |||||| || | |||| || | || || | || GCAGAAATAA TATGGCAAAT ACAAGGGAAT AG-CGAGGAA TGCAT-TTTT AAACAATATG 411 CGGGGATTGA GAGGTCC-AA ATGGGTCAAA TATATGCTGT ATACAGCATG TATACA-CTT 3450 | ||| | | | |||| || |||| | || |||| ||| ||||| || | |||||| | | CAGGGCTCAA AAAGTCCAAA ATGGATTGAA TATACATTGT ATACAACA-G TATACATCAT 470 GTGTATACTT TGTGATTCTT TTTTCAGG-A TTGGGCCAGG GCCCTTCAGC CCACCCCCCC 3509 ||||||| | ||| | | ||||||| | |||| |||| |||||| || | TTGTATAC-C T-TGA--C-T CTTTCAGGAA ATGGGTCAGG GCCCTT---- TCAGCAAAAG 521 TTTATTAACA GGCCCAAAGG CC-ATTTTTT TTTCTGCA-- -G-GTT-TTA AAGAAGGCCC 3563 ||| |||| | |||||||||| || |||| || || | | | || | || | ||||| TTTTTTAATA GGCCCAAAGG CCAATTTCTT TTGGAGGATT TGAATTGATG AAAAGGGCCC 581 AAGTAT-AA- GGATTAGATT AGGACAGGTG GGCCAAAGCC -CAA-TTGAA TGAATTTGGG 3619 || || || | ||| | |||| ||||| || ||||||| || ||||| |||||||||| AAACATGAAT AGTTTAATAT AGGATAGGTG GGTCAAAGCC TAAATTTGAA TGAATTTGGG 641 CAATCAAGCC CAAGTTCAAA TATTTCT-TT CTCTATTATT TATTTGTTTG AATTATTTAA 3678 |||||||||| |||||||||| | ||| | | || |||| | |||||||||| ||||| ||| CAATCAAGCC CAAGTTCAAA TTTTTTTCCT CTTTATTTAT TATTTGTTTG AATTAACTAA 701 T 3679 | T 702 hqPGS_C08HBa0060C12.1+_SGN-E550243- (2977 3262,3334 3679) ******************************************************************************** EST sequence 117 +strand 561 n (File: SGN-E312705+) 1 TTTTTTTTTT TGTTTTCTTG TGTGACATCG ATTCGAGTCC ATTTTGGATT CCATTCTTGC 61 ATTCCTCGTT GAGCCATAAA GACTCAAAAC ACTTTTCCCG AGTCAGCCAA CCCCCTGAAA 121 GGATGTACAG GTCGAAAGCA AAACCATTGG AGAGCTGCTG GAAGTAGCGG ATTGCAGGCA 181 TTTGGCTGTG ATTTTTGTTT TGAAGTTGTG TATCTGGTTT ATACACAATA TATACACTGT 241 GATACAGGCC AAAAATCCAC AGGAGGCCCA AACTCAAAAT CTGAATTGAC GACAGGAAAA 301 TTACGTTTCT GGAAAGGAGT TTTCAACTTC CGAAAGTTGA AAAACAGGCT TATATACCAG 361 CCTGTATACA CAGATATACC AGAGATGATA TACTATATAT ATGCTCAAAA AATATGATTG 421 GCAGGGGAAC GTACACGGAC GCTTGTTTTA ACTAAAATTC GGGATTAGGC AATTAATACG 481 GACGCGGGGT GCAGCCCGTA TACATCAGTA TACATTATCG GGTGATGATA TACACTTGTT 541 AAGTAAGTTT TAAAAAATGA T Predicted gene structure (within gDNA segment 1607 to 3985): Exon 1 2847 3328 ( 482 n); cDNA 65 559 ( 495 n); score: 0.748 PPA cDNA 11 1 MATCH C08HBa0060C12.1+ SGN-E312705+ 0.748 482 0.859 C PGS_C08HBa0060C12.1+_SGN-E312705+ (2847 3328) Alignment (genomic DNA sequence = upper lines): CTCGTTGAGC CATAAAGGCT CAAAACACTT TTTCCGAGTC AGCCAA-CCC CTGAAAGGAT 2905 |||||||||| ||||||| || |||||||||| || ||||||| |||||| ||| |||||||||| CTCGTTGAGC CATAAAGACT CAAAACACTT TTCCCGAGTC AGCCAACCCC CTGAAAGGAT 124 GTACAGCATC GAAAG-AAAA CCAGCAGA-A ACTGCTGGAA -AAGTTG-TT GCAGGGATTT 2961 |||||| || ||||| |||| ||| || | ||||||||| || | || ||||| |||| GTACAG-GTC GAAAGCAAAA CCATTGGAGA GCTGCTGGAA GTAGCGGATT GCAGGCATTT 183 -G--AAGAAC AT-GTAT-AC AGCAGTATAC ATGTTTTATA CATCTGTTAT ACGCTGATAT 3016 | || | || | || || || || |||||| || ||| || ||| || GGCTGTGATT TTTGTTTTGA AGTTGTGTAT CTGGTTTATA CACAATATAT ACACTGTGAT 243 ACAGGTCGAA ATGTGCACAG GAGGCCTAAT C-CGAAATCT GGGTCGATGG CAGTGAAAAT 3075 ||||| | || | | ||||| |||||| || | | |||||| | | || | ||| ||| | ACAGG-CCAA AAATCCACAG GAGGCCCAAA CTCAAAATCT GAATTGACGA CAGGAAAATT 302 ACGCTGCTTA AAATGAATTT TCAACTCTCG AAAGTCGAAA AACAGGCTGA TATA-CAGTC 3134 ||| | || ||| || ||| |||||| || ||||| |||| |||||||| | |||| ||| | ACGTTTCTGG AAAGGAGTTT TCAACTTCCG AAAGTTGAAA AACAGGCTTA TATACCAGCC 362 TGTATACACT GATATA-CAG ACACGATATA ATATAAATGT G-T-AAAAAA TGTGATTGGC 3191 ||||||||| |||||| ||| | | |||||| |||| || | | | |||||| | |||||||| TGTATACACA GATATACCAG AGATGATATA CTATATATAT GCTCAAAAAA TATGATTGGC 422 AGGGGAACGT AGAGGGACGC CTATTCTAAT TAAAATTCGG AATTAGGCAA ACAATGCGGA 3251 |||||||||| | | |||||| | || ||| |||||||||| ||||||||| ||| |||| AGGGGAACGT ACACGGACGC TTGTTTTAAC TAAAATTCGG GATTAGGCAA TTAATACGGA 482 CGTAGGGTGC AGCCCGTATA CATTAGTATA CATTATCGGG CGACGATATA CACTTGTTAA 3311 || |||||| |||||||||| ||| |||||| |||||||||| || |||||| |||||||||| CGCGGGGTGC AGCCCGTATA CATCAGTATA CATTATCGGG TGATGATATA CACTTGTTAA 542 GTAAGTTTTA AAAATTG 3328 |||||||||| |||| || GTAAGTTTTA AAAAATG 559 hqPGS_C08HBa0060C12.1+_SGN-E312705+ (2847 3328) ******************************************************************************** EST sequence 210 +strand 557 n (File: SGN-E390285+) 1 TTTTTTGTTT TGTTTTCTTG TGTGACATCG ATTCGAGTCC ACTTTGGATT CCATTCTTGC 61 ATTCCTCGTT GAGCCATAAA GGCTCAAAAC ACTTTTCCCG AGTCAGACAA CCCCTGAAAG 121 GATGTACAGG TGGCAAGCAA AACCATTGGA GAGCTGCTGG AAGTGGCGGA TTGCAGGCAT 181 TTGGCTGCGA TTTTTGTTTT GAAGCTGTGT ATCTGGTTTA TACACAATAT ATACACTGTG 241 ATACAGGTCA AACATCCACA GGAGGCCCAA ACTCAAAATC GGAGTTGACG ACAGGGAAAT 301 TACGTTTATG GAAAGGAGTT TTCAACTTCT GAAAGTTGAA GAACAGGCTT AAATATATCC 361 TGTATACACA GATATACAGG GATGATATAC TATATATATG CTCAAAAAAT ATGATTGGCA 421 GAGGAACGTA GAGGAACACC TATTCTAATT AAAATTCGGA ATTAGGGGGG GGGGGCGGAC 481 GTATGGTGCA GCCCGTATAC ATAAGTATAC ATTATCGGGC GATGATATAC ACTTGTTAAG 541 TAAGTTTTAA AAATGAT Predicted gene structure (within gDNA segment 1607 to 3966): Exon 1 2847 3326 ( 480 n); cDNA 65 554 ( 490 n); score: 0.752 PPA cDNA 11 1 MATCH C08HBa0060C12.1+ SGN-E390285+ 0.752 480 0.862 C PGS_C08HBa0060C12.1+_SGN-E390285+ (2847 3326) Alignment (genomic DNA sequence = upper lines): CTCGTTGAGC CATAAAGGCT CAAAACACTT TTTCCGAGTC AGCCAACCCC TGAAAGGATG 2906 |||||||||| |||||||||| |||||||||| || ||||||| || ||||||| |||||||||| CTCGTTGAGC CATAAAGGCT CAAAACACTT TTCCCGAGTC AGACAACCCC TGAAAGGATG 124 TACAGCATCG AAAG-AAAAC CAGCAGA-AA CTGCTGGAA- AAGTTG-TTG CAGGGATTT- 2961 ||||| | | ||| ||||| || || | ||||||||| | | ||| |||| |||| TACAG-GTGG CAAGCAAAAC CATTGGAGAG CTGCTGGAAG TGGCGGATTG CAGGCATTTG 183 G--AAGAACA T-G-TATACA GCAGTATACA TGTTTTATAC ATCTGTTATA CGCTGATATA 3017 | || | | | | | || || || || ||||||| | |||| | ||| ||| GCTGCGATTT TTGTTTTGAA GCTGTGTATC TGGTTTATAC ACAATATATA CACTGTGATA 243 CAGGTCGAAA TGTGCACAGG AGGCCTAATC -CGAAATCTG GGTCGATGGC AGTGAAAATA 3076 |||||| ||| | |||||| ||||| || | | ||||| | || || | | || |||| || CAGGTC-AAA CATCCACAGG AGGCCCAAAC TCAAAATCGG AGTTGACGAC AGGGAAATTA 302 CGCTGCTTAA AATGAATTTT CAACTCTCGA AAGTCGAAAA ACAGGCTGAT ATACAGTCTG 3136 || | | | || || |||| ||||| || |||| ||| | ||||||| | ||| | ||| CGTTTATGGA AAGGAGTTTT CAACTTCTGA AAGTTGAAGA ACAGGCTTAA ATATATCCTG 362 TATACACTGA TATACAGACA CGATATAATA TAAATGTG-T -AAAAAATGT GATTGGCAGG 3194 ||||||| || ||||||| | |||||| || || || || | ||||||| | ||||||||| TATACACAGA TATACAGGGA TGATATACTA TATATATGCT CAAAAAATAT GATTGGCAGA 422 GGAACGTAGA GGGACGCCTA TTCTAATTAA AATTCGGAAT TAGGCAAACA ATGCGGACGT 3254 |||||||||| || || |||| |||||||||| |||||||||| |||| |||||||| GGAACGTAGA GGAACACCTA TTCTAATTAA AATTCGGAAT TAGGGGGGGG GGGCGGACGT 482 AGGGTGCAGC CCGTATACAT TAGTATACAT TATCGGGCGA CGATATACAC TTGTTAAGTA 3314 | |||||||| |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| ATGGTGCAGC CCGTATACAT AAGTATACAT TATCGGGCGA TGATATACAC TTGTTAAGTA 542 AGTTTTAAAA AT 3326 |||||||||| || AGTTTTAAAA AT 554 hqPGS_C08HBa0060C12.1+_SGN-E390285+ (2847 3326) ******************************************************************************** EST sequence 71 +strand 799 n (File: SGN-E317062+) 1 AAAGAAACAA GGAAAGAAAG AAAATATAGA TAAAAAGGGA GTAAAGAGAA AAGGTTACAG 61 AGGAATATGG CCACAAGCTT CCAGCCATAT CACTGTATAT AAGTATTTTG AGATAGTTTC 121 TTGAAACCAT AGAGACGTTC GTCCCTGTCC TATCGCTACC TACAAGGAGC TCTATATCGC 181 CTTTTGAGTT TGAGTGTTGT GGTGGAAGAC CTCAGCGTTA TTTGTTGTTC CAGTTGGCTG 241 CTCTAAAACA GGTGAAATCT CCTCGAGTCC TCATGGACTT AAACCCATCT CGTTGCACTT 301 TCTCATTGAG CCGTAAAGGC TTGGACTGTC ATCCTTGAGT CGTAGATCCC CTCAAAACTG 361 GCGAACAGGC TAAAATATAT CAAACGAGTT GCTGGAAATT AATTGCAGGT TCATCAAAAA 421 CCTGGAAAGG GGCTGTAAAA TGTATTGGCA GGTGTTGATG AAGCTGTATA GCAGCTGTAT 481 ACATACTTTA TACATCAGTT TACAGGTCAA AAAAACGTAC AGGGGACCAA ACTCGAAATA 541 CAGGTTTATA ACAGTGAGTA CATACTTCTG GAAATAATTT TTCAGCTGTC AAAAGTTGAA 601 AAACAGGTTG ATATACAACC TGTATACACA TATATACAGG GACGATATAC TATATATATG 661 CTTAAAAAAT ATGATTGGCA GGGGAACATA GAGGGACGCC TATTCTAATT AAAATTCGGA 721 ATTAGTCAAA CATGGCGGAC GTAGGGTGCA GCCCGTATAC ATTATCGGGC GACGATATAC 781 ACTTGTTTTT AAAAATGAT Predicted gene structure (within gDNA segment 1 to 4039): Exon 1 2958 3276 ( 319 n); cDNA 444 764 ( 321 n); score: 0.757 MATCH C08HBa0060C12.1+ SGN-E317062+ 0.757 319 0.399 C PGS_C08HBa0060C12.1+_SGN-E317062+ (2958 3276) Alignment (genomic DNA sequence = upper lines): ATTTGAAGAA CATGTATACA GCAGTATACA TGTTTTATAC ATCTGTTATA CGCTGATATA 3017 ||| | || || || | || ||||| | | ||||| || ||||| | | || ATTGGCAGGT GTTG-ATGAA GCTGTATAGC AGCTGTATAC ATACTTTATA CATCAGTTTA 502 CAGGTC-GAA ATGTGCACAG GAGGCCTAAT CCGAAATCTG GGTCGATGGC AGTGAAAATA 3076 |||||| || | | |||| | | || || |||||| ||| || | ||||| | | CAGGTCAAAA AAACGTACAG GGGACCAAAC TCGAAATACA GGTTTATAAC AGTGAGTACA 562 CGCTGCTTAA AATGAATTTT CAACTCTCGA AAGTCGAAAA ACAGGCTGAT ATACAGTCTG 3136 || || | ||| | |||| || || || | |||| ||||| ||||| |||| ||||| ||| TACTTCTGGA AATAATTTTT CAGCTGTCAA AAGTTGAAAA ACAGGTTGAT ATACAACCTG 622 TATACACTGA TATACAGACA CGATATAATA TA-A-ATGTG TAAAAAATGT GATTGGCAGG 3194 ||||||| | ||||||| | ||||||| || || | ||| |||||||| | |||||||||| TATACACATA TATACAGGGA CGATATACTA TATATATGCT TAAAAAATAT GATTGGCAGG 682 GGAACGTAGA GGGACGCCTA TTCTAATTAA AATTCGGAAT TAGGCAAACA ATGCGGACGT 3254 ||||| |||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| GGAACATAGA GGGACGCCTA TTCTAATTAA AATTCGGAAT TAGTCAAACA TGGCGGACGT 742 AGGGTGCAGC CCGTATACAT TA 3276 |||||||||| |||||||||| || AGGGTGCAGC CCGTATACAT TA 764 hqPGS_C08HBa0060C12.1+_SGN-E317062+ (2958 3276) ******************************************************************************** EST sequence 72 +strand 772 n (File: SGN-E317099+) 1 GAAAAGAAAC AAGGAAAGAA AGAAAATATA GATAAAAAGG GAGTAAAGAG AAAAGGTTAC 61 AGAGGAATAT GGCCACAAGC TTCCAGCCAT ATCACTGTAT ATAAGTATTT TGAGATAGTT 121 TCTTGAAACC ATAGAGACGT TCGTCCCTGT CCTATCGCTA CCTACAAGGA GCTCTATATC 181 GCCTTTTGAG TTTGAGTGTT GTGGTGGAAG ACCTCAGCGT TATTTGTTGT TCCAGTTGGC 241 TGCTCTAAAA CAGGTGAAAT CTCCTCGAGT CCTCATGGAC TTAAACCCAT CTCGTTGCAC 301 TTTCTCATTG AGCCGTAAAG GCTTGGACTG TCATCCTTGA GTCGTAGATC CCCTCAAAAC 361 TGGCGAACAG GCTAAAATAT ATCAAACGAG TTGCTGGAAA TTAATTGCAG GTTCATCAAA 421 AACCTGGAAA GGGGCTGTAA AATGTATTGG CAGGTGTTGA TGAAGCTGTA TAGCAGCTGT 481 ATACATACTT TATACATCAG TTTACAGGTC AAAAAAACGT ACAGGGGACC AAACTCGAAA 541 TACAGGTTTA TAACAGTGAG TACATACTTC TGGAAATAAT TTTTCAGCTG TCAAAAGTTG 601 AAAAACAGGT TGATATACAA CCTGTATACA CATATATACA GGGACGATAT ACTATATATA 661 TGCTTAAAAA ATATGATTGG CAGGGGAACA TAGAGGGACG CCTATTCTAA TTAAAATTCG 721 GAATTAGTCA AACAATGGCG GACGTAGGGT GCAGCCCGTA TACATTATCG GG Predicted gene structure (within gDNA segment 1 to 3936): Exon 1 2958 3276 ( 319 n); cDNA 446 767 ( 322 n); score: 0.755 MATCH C08HBa0060C12.1+ SGN-E317099+ 0.755 319 0.413 C PGS_C08HBa0060C12.1+_SGN-E317099+ (2958 3276) Alignment (genomic DNA sequence = upper lines): ATTTGAAGAA CATGTATACA GCAGTATACA TGTTTTATAC ATCTGTTATA CGCTGATATA 3017 ||| | || || || | || ||||| | | ||||| || ||||| | | || ATTGGCAGGT GTTG-ATGAA GCTGTATAGC AGCTGTATAC ATACTTTATA CATCAGTTTA 504 CAGGTC-GAA ATGTGCACAG GAGGCCTAAT CCGAAATCTG GGTCGATGGC AGTGAAAATA 3076 |||||| || | | |||| | | || || |||||| ||| || | ||||| | | CAGGTCAAAA AAACGTACAG GGGACCAAAC TCGAAATACA GGTTTATAAC AGTGAGTACA 564 CGCTGCTTAA AATGAATTTT CAACTCTCGA AAGTCGAAAA ACAGGCTGAT ATACAGTCTG 3136 || || | ||| | |||| || || || | |||| ||||| ||||| |||| ||||| ||| TACTTCTGGA AATAATTTTT CAGCTGTCAA AAGTTGAAAA ACAGGTTGAT ATACAACCTG 624 TATACACTGA TATACAGACA CGATATAATA TA-A-ATGTG TAAAAAATGT GATTGGCAGG 3194 ||||||| | ||||||| | ||||||| || || | ||| |||||||| | |||||||||| TATACACATA TATACAGGGA CGATATACTA TATATATGCT TAAAAAATAT GATTGGCAGG 684 GGAACGTAGA GGGACGCCTA TTCTAATTAA AATTCGGAAT TAGGCAAACA AT-GCGGACG 3253 ||||| |||| |||||||||| |||||||||| |||||||||| ||| |||||| || ||||||| GGAACATAGA GGGACGCCTA TTCTAATTAA AATTCGGAAT TAGTCAAACA ATGGCGGACG 744 TAGGGTGCAG CCCGTATACA TTA 3276 |||||||||| |||||||||| ||| TAGGGTGCAG CCCGTATACA TTA 767 hqPGS_C08HBa0060C12.1+_SGN-E317099+ (2958 3276) ******************************************************************************** EST sequence 109 +strand 453 n (File: SGN-E336434+) 1 CTCCTCGAGT CCTCATGGAC TTTATTCCAT CTCACTACAC TTCCTCATCG AGCCATAAAG 61 GCTCAGAATG TCTTCTTCGA GTCATAGAAC CCTCTCAAAG GTGTACAGGT CGGAAGAACA 121 GCAGAAAATG CACTGCTGGA GATTGATTCT GGTTCACCAG AACTTGGAAA ATTGCTGGAA 181 ATTACAGTGG CATATATTGA GAAGCTGTAT ACCAACCATA TACACAGTTT ATACCGTGAT 241 ATACATATCA AAAGATGTAC AGGAGGCCTA GTTCGAAACC TGGGTTGATG GCAGTAAAGT 301 AAGCTGCTGA AAAGAATTTT TCAACTCTCG AAAGTTGAAA AACAGGCTGA TATACAGCCT 361 GTATACACTG ATATACAGAA ACGTTATACC TTAAATAGGT GTAAAAATAT GAATGGCAGC 421 AGGCGTGCGA AAATTCGAAC TTCATGAAGA TCG Predicted gene structure (within gDNA segment 1 to 4504): Exon 1 2977 3224 ( 248 n); cDNA 203 448 ( 246 n); score: 0.752 MATCH C08HBa0060C12.1+ SGN-E336434+ 0.752 248 0.547 C PGS_C08HBa0060C12.1+_SGN-E336434+ (2977 3224) Alignment (genomic DNA sequence = upper lines): AGCAGTATAC ATGTTTTATA CATCTGTTAT ACGCTGATAT ACAGGTCGAA ATGTGCACAG 3036 ||| |||||| |||| || |||| || |||||| ||| || || | || |||| AGCTGTATAC CAACCATATA CACAGTTTAT ACCGTGATAT ACATATCAAA AGATGTACAG 262 GAGGCCTAAT CCGAAATCTG GGTCGATGGC AGTGAAAATA CGCTGCTTAA AATGAATTTT 3096 |||||||| | ||||| ||| ||| |||||| ||| ||| || |||||| || || | |||| GAGGCCTAGT TCGAAACCTG GGTTGATGGC AGT-AAAGTA AGCTGCTGAA AAGAATTTTT 321 CAACTCTCGA AAGTCGAAAA ACAGGCTGAT ATACAGTCTG TATACACTGA TATACAGACA 3156 |||||||||| |||| ||||| |||||||||| |||||| ||| |||||||||| |||||||| | CAACTCTCGA AAGTTGAAAA ACAGGCTGAT ATACAGCCTG TATACACTGA TATACAGAAA 381 CGATATAATA TAAATGTGT- AAAAAATGTG ATTGGCAGGG GAACGTAGAG GGACGCCTAT 3215 || |||| ||||| || |||||| || | |||||| | ||| | | | | | CGTTATACCT TAAATAGGTG TAAAAATATG AATGGCAGCA G-GCGT-GCG AAAATTCGAA 439 TCTAATTAA 3224 | || || CTTCATGAA 448 hqPGS_C08HBa0060C12.1+_SGN-E336434+ (2977 3224) ******************************************************************************** EST sequence 368 -strand 636 n (File: SGN-E392487-) 1 TTCAAGACAC TTTCTATTAG TTTATCGCTT TAAGTGCTAA TCTTTTGTAT GTTTTATTGC 61 ATGTGAAACC CTCCTCGAGT CCTCATGGAC TTTATTCCAT CTCACTACAC TTCCTCATCG 121 AGCCATAAAG GCTCAGAATG TCTTCTTCGA GTCATAGAAC CCTCTCAAAG GTGTACAGGT 181 CGGAAGAACA GCAGAAAATG CACTGCTGGA GATTGATTCT GGTTCACCAG AACTTGGAAA 241 ATTGCTGGAA ATTACAGTGG CATATATTGA GAAGCTGTAT ACCAACCATA TACACAGTTT 301 ATACCGTGAT ATACATATCA AAAGATGTAC AGGAGGCCTA GTTCGAAACC TGGGTTGATG 361 GCAGTAAAGT AAGCTGCTGA AAAGAATTTT TCAACTCTCG AAAGTTGAAA AACAGGCTGA 421 TATACAGCCT GTATACACTG ATATACAGAA ACGTTATACC TTAAATAGGT GTAAAAATAT 481 GAATGGCAGC AGGCGTGCGA AAATTCGAAC TTCATGAAGA TCGAAGGTGC TCAAGGAAGG 541 AGTATTAGAA GATTTTTTTA TTATTATTTA TTTATTAAGT TGTATTTATT TTGGGTATAA 601 GCCCTTGTCA TTTTTACTTT CCGTATAAAA AAAAAA Predicted gene structure (within gDNA segment 1 to 6224): Exon 1 2977 3193 ( 217 n); cDNA 273 489 ( 217 n); score: 0.795 PPA cDNA 625 636 MATCH C08HBa0060C12.1+ SGN-E392487- 0.795 217 0.341 C PGS_C08HBa0060C12.1+_SGN-E392487- (2977 3193) Alignment (genomic DNA sequence = upper lines): AGCAGTATAC ATGTTTTATA CATCTGTTAT ACGCTGATAT ACAGGTCGAA ATGTGCACAG 3036 ||| |||||| |||| || |||| || |||||| ||| || || | || |||| AGCTGTATAC CAACCATATA CACAGTTTAT ACCGTGATAT ACATATCAAA AGATGTACAG 332 GAGGCCTAAT CCGAAATCTG GGTCGATGGC AGTGAAAATA CGCTGCTTAA AATGAATTTT 3096 |||||||| | ||||| ||| ||| |||||| ||| ||| || |||||| || || | |||| GAGGCCTAGT TCGAAACCTG GGTTGATGGC AGT-AAAGTA AGCTGCTGAA AAGAATTTTT 391 CAACTCTCGA AAGTCGAAAA ACAGGCTGAT ATACAGTCTG TATACACTGA TATACAGACA 3156 |||||||||| |||| ||||| |||||||||| |||||| ||| |||||||||| |||||||| | CAACTCTCGA AAGTTGAAAA ACAGGCTGAT ATACAGCCTG TATACACTGA TATACAGAAA 451 CGATATAATA TAAATGTGT- AAAAAATGTG ATTGGCAG 3193 || |||| ||||| || |||||| || | |||||| CGTTATACCT TAAATAGGTG TAAAAATATG AATGGCAG 489 hqPGS_C08HBa0060C12.1+_SGN-E392487- (2977 3193) ******************************************************************************** EST sequence 257 +strand 504 n (File: SGN-E321973+) 1 ACGCCTATTC TAATTAAAAT TCGGAATTAG TCAAACAATG CGGACGTAGG GTGCAGCCCG 61 TATACATTAT CGGGCGACGA TATACACTTG TTTTTAAAAA ATGATACAGG TATAAATACG 121 CGGGGCAATA CAGGGAAAAG TAAGGTAAAT ATATATTCAA AAGGTGCAGG GCTCAAGAGG 181 TCCAAATGGG TCAGATATTG CTGTATACAG CATGTATACA TTTGTATACT TTTATGTCTC 241 TTTTCAGGGA ATTGGGCCAG GGCCCTTCAG CCCCCCTTTT ATTTAACAGG CCCAAAGGTG 301 ATTTGTTTCT GCAGGTTTTA AAGAAGGCCC AAGTATAAGG ATTAGTTTAT GACAGGTGGG 361 TCAAAGCCCA AATGAAAGAA TTTGAGCAAT CAAGCCCAAG TTCAAATATT TCTTTCTCTA 421 TCATTTATTT GTTTGAATTA TTTAATATCT TGGTAGAATT TTAATAATCT TCTAAGGGGT 481 AGCCATTTTT CATTAAAAAA AAAA Predicted gene structure (within gDNA segment 2608 to 4770): Exon 1 3208 3689 ( 482 n); cDNA 1 456 ( 456 n); score: 0.867 PPA cDNA 495 504 MATCH C08HBa0060C12.1+ SGN-E321973+ 0.867 482 0.956 C PGS_C08HBa0060C12.1+_SGN-E321973+ (3208 3689) Alignment (genomic DNA sequence = upper lines): ACGCCTATTC TAATTAAAAT TCGGAATTAG GCAAACAATG CGGACGTAGG GTGCAGCCCG 3267 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||| || ACGCCTATTC TAATTAAAAT TCGGAATTAG TCAAACAATG CGGACGTAGG GTGCAG-CC- 58 TATACATTAG TATACATTAT CGGGCGACGA TATACACTTG TTAAGTAAGT TTTAAAAATT 3327 | | |||||||||| |||||||||| |||||||||| | | | || |||||| ----C----G TATACATTAT CGGGCGACGA TATACACTTG -T---T---T TTAAAAAATG 103 GTACAGGTAC AAATACGCAG GGCAATACAG GGAAAAGTAG CGGAAAATAT ATATTCAAAT 3387 |||||||| |||||||| | |||||||||| ||||||||| || |||||| ||||||||| ATACAGGTAT AAATACGCGG GGCAATACAG GGAAAAGTA- AGGTAAATAT ATATTCAAA- 161 AGGTGCGGGG ATTGAGAGGT CCAAATGGGT CAAATATATG CTGTATACAG CATGTATACA 3447 |||||| ||| | |||||| |||||||||| || |||| || |||||||||| |||||||||| AGGTGCAGGG CTCAAGAGGT CCAAATGGGT CAGATAT-TG CTGTATACAG CATGTATACA 220 CTTGTGTATA CTTTGTGATT CTTTTTTCA- GG-ATTGGGC CAGGGCCCTT CAGCCCACCC 3505 || |||||| |||| | | || |||||| || ||||||| |||||||||| ||| | ||| -TT-TGTATA CTTT-TATGT CTCTTTTCAG GGAATTGGGC CAGGGCCCTT CAG--C-CCC 274 CCCCTTTATT AACAGGCCCA AAGGCCATTT TTTTTTCTGC AGGTTTTAAA GAAGGCCCAA 3565 || || || |||||||||| |||| | | || ||||||| |||||||||| |||||||||| CCTTTTATTT AACAGGCCCA AAGGTGA--T TTGTTTCTGC AGGTTTTAAA GAAGGCCCAA 332 GTATAAGGAT TAGATTAGGA CAGGTGGGCC AAAGCCCAAT TGAATGAATT TGGGCAATCA 3625 |||||||||| ||| ||| || |||||||| | ||||||||| |||| ||||| || ||||||| GTATAAGGAT TAGTTTATGA CAGGTGGGTC AAAGCCCAAA TGAAAGAATT TGAGCAATCA 392 AGCCCAAGTT CAAATATTTC TTTCTCTATT ATTTATTTGT TTGAATTATT TAATATCTTG 3685 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGCCCAAGTT CAAATATTTC TTTCTCTATC ATTTATTTGT TTGAATTATT TAATATCTTG 452 GTAG 3689 |||| GTAG 456 hqPGS_C08HBa0060C12.1+_SGN-E321973+ (3208 3689) ******************************************************************************** EST sequence 406 -strand 506 n (File: SGN-E316728-) 1 GACGTAGGGT GCAGCCCGTA TACATAAGTA TACATTATCG GGCGATGATA TACACTTGTT 61 AAGTAAGTTT TAAAAATGAT ACAGGTACAA ATACGCAGGG CAATACAGGA AAAACAACGG 121 GAAATATGTA TTTAAATAGG TGCATGGCTC GAGAGGTCCA AATGGGTCAA ACATATACTG 181 CATACAGCAT GTATACATTA GTGTATACCT TCATGATCTT TTTTTCAGGA ATGGGCCAGG 241 GCCCTTCAGC ATCTTTTTGA CAGGCCCAAG GGGCCAAAAT GTTTTTTTTT ATGCAGGATT 301 TTTAATTTGT TGAAAGGGCC CAAGTCCATA TTTGAAATAG ATAGGATAGG TGGGCTAAAA 361 CCCAATGGAA TGAATTTGGG CAATAAGGTC CAAGTTCAAA TTATTTCTCC TCTTTATTTA 421 TTACTTGCTT GAATTAATTA TTGTTATGGT AGAATTTTAA TAATCTCAAA AAAAAAAAAA 481 AAAAAACTCA AACTAGTTCG CTCTCT Predicted gene structure (within gDNA segment 2640 to 7137): Exon 1 3250 3694 ( 445 n); cDNA 1 457 ( 457 n); score: 0.746 Intron 1 3695 3833 ( 139 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.70) Exon 2 3834 3879 ( 46 n); cDNA 458 502 ( 45 n); score: 0.696 MATCH C08HBa0060C12.1+ SGN-E316728- 0.746 491 0.970 C PGS_C08HBa0060C12.1+_SGN-E316728- (3250 3694,3834 3879) Alignment (genomic DNA sequence = upper lines): GACGTAGGGT GCAGCCCGTA TACATTAGTA TACATTATCG GGCGACGATA TACACTTGTT 3309 |||||||||| |||||||||| ||||| |||| |||||||||| ||||| |||| |||||||||| GACGTAGGGT GCAGCCCGTA TACATAAGTA TACATTATCG GGCGATGATA TACACTTGTT 60 AAGTAAGTTT TAAAAATTGT ACAGGTACAA ATACGCAGGG CAATACAGGG AAAAGTAGCG 3369 |||||||||| ||||||| | |||||||||| |||||||||| ||||||| || |||| | || AAGTAAGTTT TAAAAATGAT ACAGGTACAA ATACGCAGGG CAATACA-GG AAAAACAACG 119 GAAAATATAT ATTCAAATAG GTGCGGGGAT TGAGAGGTCC AAATGGGTCA AATATATGCT 3429 | |||||| | ||| |||||| |||| || | ||||||||| |||||||||| || |||| || GGAAATATGT ATTTAAATAG GTGCATGGCT CGAGAGGTCC AAATGGGTCA AACATATACT 179 GTATACAGCA TGTATACACT TGTGTATA-C TTTGTGATTC TTTTTTCAGG ATTGGGCCAG 3488 | |||||||| |||||||| | ||||||| | || |||| |||||||||| | |||||||| GCATACAGCA TGTATACATT AGTGTATACC TTCATGATCT TTTTTTCAGG AATGGGCCAG 239 GGCCCTTCAG C-CCACCCCC CCTTTATTAA CAGGCCCAAA GGCCATTTTT TTTTCTGCA- 3546 |||||||||| | | | || |||| ||| | ||||| | | | | | GGCCCTTCAG CATCTTTTTG ACAGGCCCAA GGGGCCAAAA TGTTTTTTTT TATGCAGGAT 299 -GGT--TTTA AAG-AA-GGC CCAAGT--AT A--AGGATTA GATTAGGACA GGTGGGCCAA 3597 | ||| | || ||| |||||| || | | | || || ||||| | ||||||| || TTTTAATTTG TTGAAAGGGC CCAAGTCCAT ATTTGAAATA GA-TAGGATA GGTGGGCTAA 358 AGCCCAATTG AATGAATTTG GGCAATCAAG CCCAAGTTCA AA-TATTTCT -TTCTCTATT 3655 | |||||| | |||||||||| |||||| | | ||||||||| || ||||||| ||| |||| AACCCAATGG AATGAATTTG GGCAATAAGG TCCAAGTTCA AATTATTTCT CCTCTTTATT 418 ATTTATTTGT TTGAATTATT TAATATCTTG GTAGATTTTT TTTTTTTAAA AAAAAATCTC 3715 ||| ||| |||||||| | || | | || ||||| ||| TATTACTTGC TTGAATTAAT TATTGTTATG GTAGAATTT. .......... .......... 457 CTAAAGGGGT AGTCATTTTT CATTATTTAA ATTTTATTAT TTTTGTTTTT ACTTACTTTT 3775 .......... .......... .......... .......... .......... .......... 457 ATCACAATTT AGTTTTCCTT AAATTAATTC CCTCAAAATA TCTCCCTTTA GAAATAAATA 3835 || .......... .......... .......... .......... .......... ........TA 459 ATAATAATAA AAAATAAAAT AATAAATATT AAAATAAATT TTCT 3879 ||||| | | |||| |||| || ||| | | ||| | || || ATAAT-CTCA AAAAAAAAAA AAAAAAAACT CAAACTAGTT CGCT 502 hqPGS_C08HBa0060C12.1+_SGN-E316728- (3250 3694) ******************************************************************************** EST sequence 227 +strand 623 n (File: SGN-E356241+) 1 TAAATAGATT AGGACAGGTG GGCCAAAGCC CAATTGGATG GATTTGGGCA ATCAAGCCCA 61 AGTTCAAATA TTTTTCTCTC TTTATTTATT ATTTGTTTGA ATTAATTAGT GTTTTGGTAG 121 AATTTTAATA ATCTCCTAAA GAGTAGCCAT TTTTCATTAT TTTAAATTTT ACTATTTTAT 181 TCACTTTTAT CACCATTTAG TTTTCCTTAA ATTAATTCCC TCTAAACATT TTCCTTAAGA 241 AAAAAAAAAG TAAAAAGAAT GAAATACAAA ATATCAAAAT GAATTTTCTC TTTTACTTAG 301 TTAAAAATTT TTATTTTAAA AGTCATTTAG TCAAATCGCC GGTCAACCGC AAGTTAGCGG 361 GCATCCCGAG GGCCTAACAC CTTCTCGAGA TGTACATTGA ACTTCGAACC CTTTTCAATT 421 GATTTTTAAT CTGTTTTTNA ATCTTTTGAA GTTTTTCTTG ATTTTGTCAA AAATCAAGTG 481 GCGACTCCAA TTTTGAAGGT CGGTTTTTCT TTAACAATAA GATTAATTGA TTTTTCGAAA 541 CCTAGTCAAT TTTTTCTCAT TTCTCCATTT TAACATAACA GTAGTATATT TTTTAAGTAA 601 AACACATAAT ACTCATGTAA TAA Predicted gene structure (within gDNA segment 2936 to 5464): Exon 1 3576 4136 ( 561 n); cDNA 5 562 ( 558 n); score: 0.762 MATCH C08HBa0060C12.1+ SGN-E356241+ 0.762 561 0.900 C PGS_C08HBa0060C12.1+_SGN-E356241+ (3576 4136) Alignment (genomic DNA sequence = upper lines): TAGATTAGGA CAGGTGGGCC AAAGCCCAAT TGAATGAATT TGGGCAATCA AGCCCAAGTT 3635 |||||||||| |||||||||| |||||||||| || ||| ||| |||||||||| |||||||||| TAGATTAGGA CAGGTGGGCC AAAGCCCAAT TGGATGGATT TGGGCAATCA AGCCCAAGTT 64 CAAATA--TT TCTTTCTCTA TTATTTATTT GTTTGAATTA TTTAATATCT TGGTAGATTT 3693 |||||| || ||| ||| || || |||||| |||||||||| ||| | | | ||||||| CAAATATTTT TCTCTCTTTA TTTATTATTT GTTTGAATTA ATTAGTGTTT TGGTAGA--- 121 TTTTTTTTTA AAAAAAAATC TCCTAAAGGG GTAGTCATTT TTCATTATTT AAATTTTATT 3753 | ||| || |||| ||||||| | |||| ||||| |||||||||| || || || AT-TTT---- ---AATAATC TCCTAAA-GA GTAGCCATTT TTCATTATTT TAA-ATT-TT 170 ATTTTTGTTT TTACTTACTT TTATCACAAT TTAGTTTTCC TTAAATTAAT TCCCTCAAAA 3813 | | || || || | |||| ||||||| || |||||||||| |||||||||| |||||| ||| ACTATT-TTA TT-C--ACTT TTATCACCAT TTAGTTTTCC TTAAATTAAT TCCCTCTAAA 226 TATCTCCCTT TAGAAATAAA TAA-TAATAA TAA--AAA-A -TAAA-AT-- -AATAAATAT 3864 || | |||| ||||| ||| || ||| || || ||| | ||| || ||| ||| | CATTTTCCTT AAGAAAAAAA AAAGTAAAAA GAATGAAATA CAAAATATCA AAATGAATTT 286 TAAAATAAA- TT--TT---- CTTTTTACTT AAAAAGTCAT TTAGTCAAAT CGCCGGTCAA 3917 | | | || || |||||| || ||||||||| |||||||||| |||||||||| TCTCTTTTAC TTAGTTAAAA ATTTTTATTT TAAAAGTCAT TTAGTCAAAT CGCCGGTCAA 346 CCGCAAGTTA GCGGACATCC CGAGGGCCTA ATACCTTCTC GGGATGTACA TTGAACTTCG 3977 |||||||||| |||| ||||| |||||||||| | |||||||| | |||||||| |||||||||| CCGCAAGTTA GCGGGCATCC CGAGGGCCTA ACACCTTCTC GAGATGTACA TTGAACTTCG 406 AACCTTTGTT TTTCAATTGA -TTTTAATCT G-TTTTAAAT CTTTTGAAAT TTTTCTTGAT 4035 |||| | |||||||||| ||||||||| | |||| ||| |||||||| | |||||||||| AACC----CT TTTCAATTGA TTTTTAATCT GTTTTTNAAT CTTTTGAAGT TTTTCTTGAT 462 TTTATC-AAA ATCAAGTGGC GACTCCGTAA TTCGAAAAGT CGATTTTTCT TAAATAATAA 4094 ||| || ||| |||||||||| |||||| || || || || || ||||||| | || ||||| TTTGTCAAAA ATCAAGTGGC GACTCC--AA TTTTGAAGGT CGGTTTTTCT TTAACAATAA 520 GATTAATTGA TTTTTCGAAA CCTAGTCAAT GTTTTTTCAT TT 4136 |||||||||| |||||||||| |||||||||| |||| |||| || GATTAATTGA TTTTTCGAAA CCTAGTCAAT TTTTTCTCAT TT 562 hqPGS_C08HBa0060C12.1+_SGN-E356241+ (3576 4136) ******************************************************************************** EST sequence 273 +strand 446 n (File: SGN-E349190+) 1 AAAATAAAAT AATAAATATT AAAATAAATT TTCTTTTTAC TTAAAAAGTC ATTTAGTCAA 61 ATCGCCGGTC AACCGCAAGT TAGCGGACAT CCCGAGGGCC TAATACCTTC TCGGGATGTA 121 TATTGAACTT CGAACCTTTG TTTTTCAATT GATTTTAATC TGTTTTAAAT CGTTTGAAAT 181 TTTTCTTGAT TTTATCAAAA TCAAGTGGCG ACTCCGTAAT TCGAAAAGTC GATTTTTCTT 241 AAATAATAAG ATTAATTGAT TTTTCGAAAC CTAGTCAATG TTTTTTCATT TTTAAAACCA 301 AAAAAATAGT TAATAATAAT TTTTAAGTAA AACAATATTT GTAGGTGCAT AAAAAATAAG 361 TTTATATGTA TAAAATTAAT ATAATGTTTG ACTGACAATT TTAAAATCCA TAATTACATG 421 TATAAATTAT GAAAAAATTC ATGTAT Predicted gene structure (within gDNA segment 3093 to 6490): Exon 1 3846 4187 ( 342 n); cDNA 1 343 ( 343 n); score: 0.975 Intron 1 4188 5750 (1563 n); Pd: 0.000 (s: 0.87), Pa: 0.715 (s: 0) Exon 2 5751 5764 ( 14 n); cDNA 344 357 ( 14 n); score: 0.786 MATCH C08HBa0060C12.1+ SGN-E349190+ 0.975 356 0.798 C PGS_C08HBa0060C12.1+_SGN-E349190+ (3846 4187,5751 5764) Alignment (genomic DNA sequence = upper lines): AAAATAAAAT AATAAATATT AAAATAAATT TTCTTTTTAC TTAAAAAGTC ATTTAGTCAA 3905 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATAAAAT AATAAATATT AAAATAAATT TTCTTTTTAC TTAAAAAGTC ATTTAGTCAA 60 ATCGCCGGTC AACCGCAAGT TAGCGGACAT CCCGAGGGCC TAATACCTTC TCGGGATGTA 3965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCCGGTC AACCGCAAGT TAGCGGACAT CCCGAGGGCC TAATACCTTC TCGGGATGTA 120 CATTGAACTT CGAACCTTTG TTTTTCAATT GATTTTAATC TGTTTTAAAT CTTTTGAAAT 4025 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TATTGAACTT CGAACCTTTG TTTTTCAATT GATTTTAATC TGTTTTAAAT CGTTTGAAAT 180 TTTTCTTGAT TTTATCAAAA TCAAGTGGCG ACTCCGTAAT TCGAAAAGTC GATTTTTCTT 4085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTGAT TTTATCAAAA TCAAGTGGCG ACTCCGTAAT TCGAAAAGTC GATTTTTCTT 240 AAATAATAAG ATTAATTGAT TTTTCGAAAC CTAGTCAATG TTTTTTCATT TTTAAAACC- 4144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAATAATAAG ATTAATTGAT TTTTCGAAAC CTAGTCAATG TTTTTTCATT TTTAAAACCA 300 AAAAAATAGT TAATAATAAT TTTTAAGTAA AACAATTATT AAATAAGGAG GTGTCCTGTC 4204 |||||||||| |||||||||| |||||||||| |||||| || | AAAAAATAGT TAATAATAAT TTTTAAGTAA AACAATATTT GTA....... .......... 343 ACAATTCGTT GAATTTCTAG TCACATATTG CTCAGCTTAT GCATAAAAAA ACAACAAACA 4264 .......... .......... .......... .......... .......... .......... 343 AACAAATTTA AAGGCACGTA TAGTGGATCA AGTTGTTTTA ATTAAAATTT CAAAAAGTCT 4324 .......... .......... .......... .......... .......... .......... 343 AAGCTACAAT TTAATTGTTC AGACCATAAT TTTGAAACCC GTAACTCAAA ATACGTTAAT 4384 .......... .......... .......... .......... .......... .......... 343 ATATATGGTT TTACTTTGAA AATATGAACA AAGTATCAAG AATATCTATT CCTGTGATTA 4444 .......... .......... .......... .......... .......... .......... 343 TGGATTGTCA AATAAAAATT AAAAATGAAA CATTTTAATA ATGAACATAT CCAATTATAA 4504 .......... .......... .......... .......... .......... .......... 343 CTTTATATTA GCATCTTTGA CAAATAAATT GTCAATATTT GCGGTGATTT TTTTTGAATT 4564 .......... .......... .......... .......... .......... .......... 343 TCCTATACTG GCCAGGATCT ATCAATACCA CATATTTTAT AGTGCTAAAA ATATATAGAA 4624 .......... .......... .......... .......... .......... .......... 343 AATTATTGGT ATACTAAAAT TAGTTATTTC AAACATTTAT CATTTTAAAA ATTAAGAGTG 4684 .......... .......... .......... .......... .......... .......... 343 TAATAATTAT CTATTCAACT TTACCCTTGG TGTTAGTTAC GTTGCTCTAG AATTAAAAGA 4744 .......... .......... .......... .......... .......... .......... 343 GAAAACCAAA TTAAAGAATG TGAAGCAGTT GATAAAGCTA TTCCTTTCTT AGAGGTTTTG 4804 .......... .......... .......... .......... .......... .......... 343 ATTTTGAGTT TTAGATATTA AATAATTTTT TTGTAAGGAC ATGTTTTAAT ATAATAAGGG 4864 .......... .......... .......... .......... .......... .......... 343 ATTAACTTAT ATTCACTGAT AGTGGACAAA ATAAATTATA CCATCAACTC ATTTTAGAAA 4924 .......... .......... .......... .......... .......... .......... 343 TATTTATTTT TAAAATATAT TACTTATTAT TAATATTTAA ATAATAATTA TTATAAAAGT 4984 .......... .......... .......... .......... .......... .......... 343 ATTATATGAT AACCACTACA AGAAAACTGT AAATTACATG ACGTTTTTCC TAGGAATCGG 5044 .......... .......... .......... .......... .......... .......... 343 AATAAAAATT TGCAGGAAAA TAAATTTCCT ACGAATTTTC ATACTAATCT CCAAGAAAAT 5104 .......... .......... .......... .......... .......... .......... 343 CTCCATATAA TTTACAATTT TCTTGATAGT GAACTTGAAC TCTAAATTAA TTGTAAAAGT 5164 .......... .......... .......... .......... .......... .......... 343 TTGTTTAGGA TTCTACTTGG TTGCCAAAGA TAAGAAGATT TTTTGCTGTG TTTTCTTGTT 5224 .......... .......... .......... .......... .......... .......... 343 CTGCTTATTT TTACCTCATT CCCATCGACT GTATTAAAGC AATTTGAGAG AATCATTACT 5284 .......... .......... .......... .......... .......... .......... 343 CATAACTTTT TACTTTTTTT TGAAAAAAAA ATTAGACTAA GTAATTTCAG AAAAAAACTA 5344 .......... .......... .......... .......... .......... .......... 343 TTCATAACTT ATTAAGTCTT CTTTCTAACA TGAAAAAGTT TTTGGATAGA TGCTTCCATT 5404 .......... .......... .......... .......... .......... .......... 343 GCTTCAACTT TTCTCTTCTT AGTTCATTTT ATCAACAATA CCAAAATTAA TTGAAAATAA 5464 .......... .......... .......... .......... .......... .......... 343 ACTTTGATCC ATATACATTC ATATGTATTC CAATTTATTT AAGTAATACT TTTTGTCCAC 5524 .......... .......... .......... .......... .......... .......... 343 CGTCAATGAA TATAAGTTAA TCTCATATAA ATATCGAACA CCGAATAAAG AAAAAGAGAA 5584 .......... .......... .......... .......... .......... .......... 343 CTAAAAGGCG AACAAATCAA CAAAGATTAA CGAATTAATA AGGGATAAAT TAATTATTTT 5644 .......... .......... .......... .......... .......... .......... 343 TTCTTCTTAC TGGGTGTGTA AATCTGGTTT TTGTATCTTG CTATTCTTCT CCCATGCACT 5704 .......... .......... .......... .......... .......... .......... 343 TTTGTCTTCT CAATTTTTTT GATTTCATTT CTTTTGAGTT GATCAGGGTC TATCAAAAAT 5764 ||| || |||||| .......... .......... .......... .......... ......GGTG CATAAAAAAT 357 hqPGS_C08HBa0060C12.1+_SGN-E349190+ (3846 4187) ******************************************************************************** EST sequence 395 +strand 612 n (File: SGN-E549216+) 1 TGGGACCGGG CCCCCCTCGA GTTTTTTTTT TTTTTTTTTA AAAATACACT TCTTTTAAAA 61 TAAGCAACTA GTAGTACTAC AAGCATACAA ATAACAAAAT ACCAAACACA GAAAGAAACT 121 AATTTTGTCT TAAGCACATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTGAGCAA 181 CAAGCTAAGG GAAAGTGGAA CATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 241 GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC AAGTCCTTCA ATTAAAGAGC AACATTGAGT 301 CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 361 ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 421 GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGGCATTAG TGGAACTAAC 481 CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGGTTG CACCAAACTT 541 AGACATTTTT TCCAAACTTA AGAAATTAAA ATTAGCACTC TCAACAATTG AATGTGGCTA 601 ATTAGTTGTT TG Predicted gene structure (within gDNA segment 10198 to 7106): Exon 1 9333 9286 ( 48 n); cDNA 80 123 ( 44 n); score: 0.708 Intron 1 9285 8252 (1034 n); Pd: 0.000 (s: 0.71), Pa: 0.000 (s: 0.90) Exon 2 8251 7812 ( 440 n); cDNA 124 564 ( 441 n); score: 0.953 PPA cDNA 39 21 MATCH C08HBa0060C12.1- SGN-E549216+ 0.953 488 0.797 C PGS_C08HBa0060C12.1-_SGN-E549216+ (9333 9286,8251 7812) Alignment (genomic DNA sequence = upper lines): CAGCCACTAC AACTAAGACC AAATAACAAA CTACCGCTAG AAAATCATAT TTGAGAGATA 9274 || || ||| || ||| | ||||| |||| | || | || ||| | || CAAGCA-TAC AAATAA--CA AAATACCAAA C-ACAGAAAG AAACTAAT.. .......... 123 AAAAACATGT AGCATTCATC CCGGTATGAA CTTTTGGAGA ACTTTTGGAG AATTTTAGCG 9214 .......... .......... .......... .......... .......... .......... 123 GCTACTGAAA TTTTCACCTT GTTGATAAGG GTTAGATTCC CCCTCTTGTT TCCCTTCTTT 9154 .......... .......... .......... .......... .......... .......... 123 ATTTTTAACT CTCACTTTGT TGGGATGGTT TTCACATATC GTATTATATT GTATTATATT 9094 .......... .......... .......... .......... .......... .......... 123 AACTTGATGA ATACAATCTT TGGATATATT GTATCGTTTT TCATCGCTAC ATAACATCAT 9034 .......... .......... .......... .......... .......... .......... 123 ACACGAGCAA TTTTGAAGGA CAAACTTATA AGAAAAGTAA GGTATTTGGT AGAGCTAATA 8974 .......... .......... .......... .......... .......... .......... 123 TAAAAAAGTA CAGTGAAAGA ATTAAATAGG ATTATTATTT TAAAAAAGAA GAAGAAATAA 8914 .......... .......... .......... .......... .......... .......... 123 GGTAACGATG CAATCATCGG TTGTTACATA AGACTTTTCA TCCTTATGTA ACAAGGAATT 8854 .......... .......... .......... .......... .......... .......... 123 TTATGATATG ATACGATAAA AATTAAAAAC AATCAAAACA AAACAAATAT TATATATATA 8794 .......... .......... .......... .......... .......... .......... 123 TTTAAACTAA CAATACAGTA TAAACTTTTT TCATCACATT AATAAAAAAA TTGATTTTTT 8734 .......... .......... .......... .......... .......... .......... 123 AAATATTTTT ATTTAAAGTT TTCATTTTTA AAATATTGAG TTGATCTCAA TCCGATTTAA 8674 .......... .......... .......... .......... .......... .......... 123 TTTAACTTCA AAATTAGGTT AGGATATATT CATTAAATTT TTTTTGATTC AATACATTTT 8614 .......... .......... .......... .......... .......... .......... 123 TATGTGGTTA AGTCATTTTA AAATGCATTA ACCAATATAG TCAAGTAAAA GGTCAAACAA 8554 .......... .......... .......... .......... .......... .......... 123 ACAAATTGAA ACGGAGAAAG TATTATCATA CGAAGATTCA AATTTTTGAT CCTAGTATAG 8494 .......... .......... .......... .......... .......... .......... 123 TACTACAATA GAACAGTAAC ATACATAAAA AGAAGAAAGT TAAGCCCATC AATATTTATA 8434 .......... .......... .......... .......... .......... .......... 123 ACATCAAACA TTTTAACATA AACTTTAAAA GATAGACATT TATTTCATGA AAAGAAGGCA 8374 .......... .......... .......... .......... .......... .......... 123 ATAACTATAG CCTCCCTTGT AAACAAACTA GAATACAATA AGGAAGTATA CTTCCTTTTG 8314 .......... .......... .......... .......... .......... .......... 123 AAAATAAGCC CACAAAACAT CAAATAATAC ACTGAAAGAA ATTGAACTAT ATGAATTGAA 8254 .......... .......... .......... .......... .......... .......... 123 AATTTGGCTT ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC 8194 |||| ||| | ||||| |||||||||| |||||||||| |||||||||| ||| |||||| ..TTTGTCTT AAGCACATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTGAGCAAC 181 AAGCTAAGTG AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG 8134 |||||||| | ||||||| | |||||||||| |||||||||| |||||||||| |||||||||| AAGCTAAGGG AAAGTGGAAC ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG 241 CAAAGGCAAA CAGCAGCATC AAGATCAACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC 8074 |||||||| | |||||||||| ||| |||||| |||||||||| |||||||||| ||| |||||| CAAAGGCAGA CAGCAGCATC AAGGTCAACA AGTCCTTCAA TTAAAGAGCA ACATTGAGTC 301 TTGGCTGGAC TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA 8014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCTGGAC TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA 361 TTTAGTTTTA GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGGG 7954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGTTTTA GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGGG 421 GTAGGGTAGT GGGGTTTGGG GTGTGGGGGT GGTGGGCATG GGACATTAGT GGAACTAACC 7894 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GTAGGGTAGT GGGGTTTGGG GTGTGGGGGT GGTGGGCATG GGGCATTAGT GGAACTAACC 481 ATAGTGAAAA AAAGAATGTT CAATGTGAGA ACAAGGGCAA TTGAGTATGC ACCAAACTTA 7834 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| ATAGTGAAAA AAAGAATGTT CAATGTGAGA ACAAGGGCAA TTGAGGTTGC ACCAAACTTA 541 ACCATTTTTT -CAAAGTTAA GAA 7812 |||||||| |||| |||| ||| GACATTTTTT CCAAACTTAA GAA 564 hqPGS_C08HBa0060C12.1-_SGN-E549216+ (9333 9286,8251 7812) ******************************************************************************** EST sequence 160 -strand 579 n (File: SGN-E353121-) 1 TTTTTTTTTT ACATACAAAC TTCAAAAGAA ACCATTTATT TCATGAAAAT TGGATACAAC 61 AATAATTAAA AGGGGCAATT ACTAGCNTCC ATTCCAANCC AATAGAGTAA AAAATACACT 121 TCTTTTAAAA TAAGCAACTA GTAGTACTAC AAGCATACAA ATAACAAATT ACCAACNACA 181 GAAAGAAACT AATTTTGTCT TAAGCACATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT 241 TGTTGAGCAA CAAGCTAAGG GAAAGTGGAA CATTTAGATT AATTCCCAAC ACATTGGCTT 301 TAAGGGCAGT GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC AAGTCCTTCA ATTAAAGAGC 361 AACATTGAGT CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT 421 TGGCACAAGC ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG 481 AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGGCATTAG 541 TGGAACTAAC CATAGTGAAA AAAAGAATGT TCAATGTGA Predicted gene structure (within gDNA segment 10908 to 7266): Exon 1 9314 9286 ( 29 n); cDNA 165 193 ( 29 n); score: 0.724 Intron 1 9285 8252 (1034 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 8251 7866 ( 386 n); cDNA 194 579 ( 386 n); score: 0.966 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E353121- 0.966 415 0.717 C PGS_C08HBa0060C12.1-_SGN-E353121- (9314 9286,8251 7866) Alignment (genomic DNA sequence = upper lines): CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 ||||| || | || || | | |||| | || CAAATTACCA ACNACAGAAA GAAACTAAT. .......... .......... .......... 193 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 193 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 193 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 193 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 193 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 193 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 193 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 193 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 193 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 193 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 193 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 193 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 193 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 193 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 193 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 193 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 193 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 |||| || || |||| .......... .......... .......... .......... ...TTTGTCT TAAGCACATT 210 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| |||||||| | GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTGAGCAA CAAGCTAAGG GAAAGTGGAA 270 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAG ACAGCAGCAT 330 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||| ||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CAAGGTCAAC AAGTCCTTCA ATTAAAGAGC AACATTGAGT CTTGGCTGGA CTACTTCCAA 390 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 450 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 510 GGTGTGGGGG TGGTGGGCAT GGGACATTAG TGGAACTAAC CATAGTGAAA AAAAGAATGT 7875 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GGTGTGGGGG TGGTGGGCAT GGGGCATTAG TGGAACTAAC CATAGTGAAA AAAAGAATGT 570 TCAATGTGA 7866 ||||||||| TCAATGTGA 579 hqPGS_C08HBa0060C12.1-_SGN-E353121- (9314 9286,8251 7866) ******************************************************************************** EST sequence 394 +strand 473 n (File: SGN-E288121+) 1 GAGTTTTTTT TTTTTTTTTT TTTAATAATA ATTCCTTATT TAATAGATGT CAAATTTATT 61 ACAAATACAA ATAATTGGAT ACTTACTAAT AGTAAACAAA GGCTAACGAG CCTAGGCTTT 121 CTTACTATAA TATAAATAAT AAACACACAA AAATATAGAA GGAAAAATAA AATTGAAAAT 181 ATCTAAATAA TGGAAAAGCA ATATGATTTA TGCACATTGG AAGTCCTTGG GTGCATATTT 241 GCCACAATTG TTGAGCAACA AGCTGAGTGA AAGTGGAAGA TTTAGATTAA TACCCAACAA 301 ATTGGCTTTA AGGGCAGTGC AAAGGCAAAC AGCAGCATCA AGGTCAACAA GTCCTTCAAT 361 TAAAGAGCAA CATTGAGTCT TGGATGGACT ACTTCCAATA ATAAGGTGCA ATAAGTCACC 421 CAACAAATTT GCACAAGCAT TTAGCTTTAG TGTGTCCTTT GGGCACTCAC CCT Predicted gene structure (within gDNA segment 11752 to 6461): Exon 1 10413 10395 ( 19 n); cDNA 102 120 ( 19 n); score: 0.684 Intron 1 10394 8374 (2021 n); Pd: 0.560 (s: 0), Pa: 0.000 (s: 0.64) Exon 2 8373 8329 ( 45 n); cDNA 121 164 ( 44 n); score: 0.644 Intron 2 8328 8293 ( 36 n); Pd: 0.900 (s: 0.64), Pa: 0.000 (s: 0.64) Exon 3 8292 7980 ( 313 n); cDNA 165 473 ( 309 n); score: 0.879 PPA cDNA 23 3 MATCH C08HBa0060C12.1- SGN-E288121+ 0.879 377 0.797 C PGS_C08HBa0060C12.1-_SGN-E288121+ (10413 10395,8373 8329,8292 7980) Alignment (genomic DNA sequence = upper lines): GCTAATGAGA TTCGTCTATG TATCCCAAAT ACATGCAAAT CCACTTGAAT ACAATGTATC 10354 ||||| ||| | | || | GCTAACGAGC CTAGGCTTT. .......... .......... .......... .......... 120 TAAAATAAAC TACACCTAAT TTGCCCCATA TACTTCAAGG TACATGTATC TAGACATAGC 10294 .......... .......... .......... .......... .......... .......... 120 TAGACGCACC AATATCTGAT AAGATTTGTA ATATTGTAAA GAAAAGTATA CATCTAAGTA 10234 .......... .......... .......... .......... .......... .......... 120 ATAAACTTGT AAACTAGTGA AATTACTATA AGTTTCCTAT AAAATTCTAC TAGTGTGAAT 10174 .......... .......... .......... .......... .......... .......... 120 GGTTGAGAAT ATGGGCCAAA TAAATATTGG ATGTGGTGTG GATAATTTAT GTAGGCTCAA 10114 .......... .......... .......... .......... .......... .......... 120 TTCAAGATAC AATACTATAG AGGCCCAAAA TTGCTAATGG GGTAGGAACT TGTGATTCTC 10054 .......... .......... .......... .......... .......... .......... 120 TTTACCATTC AGGCAAAATC TTATATTTTC CGGTAAAAAA TAGTTGGTGT AGTTCATCAA 9994 .......... .......... .......... .......... .......... .......... 120 AAGAGTAATA TCACGAGCTC AATTACTACG CATTCCATGA TATGTGTCAA AAATTGTCAT 9934 .......... .......... .......... .......... .......... .......... 120 GTCAGCGAAT TGCGTCTAAT CAACACACTA TAAGTAAGTT TTGGTGCAAA ATTAAAATAG 9874 .......... .......... .......... .......... .......... .......... 120 ACTGTAGAAC TGTAGTAACG ACATACAGAA TATGAACAAC TCGATCCTAG AAAATATAAA 9814 .......... .......... .......... .......... .......... .......... 120 CTTACAATAG AGTACATTAT TATTAGTAGT ATTAGTATTA GTATTATTAA ATAGTATAGA 9754 .......... .......... .......... .......... .......... .......... 120 AAATGGCTAC TGTGATAATT TTGTCCGTGG AGATTTATTT ATTTATAATT TTTGTGTTGA 9694 .......... .......... .......... .......... .......... .......... 120 GATATATAAG TAGGGTTGTT TATAAATGCA CTTAATTTAT ATAGGGAGAA TTTATGCATC 9634 .......... .......... .......... .......... .......... .......... 120 GTTAATTAAT AAACAATACA TAGTTCACCT AAGCAATTTT TGAGAGAGAG ATTAATACTA 9574 .......... .......... .......... .......... .......... .......... 120 TTATAGAATA ATTTGTTTCT GCCTTCTCGA AAACAAAATA CAATCACTAT AAGACAATTG 9514 .......... .......... .......... .......... .......... .......... 120 AATATGTATA TTGATTTAAT TTAGGCGTAT GTAGGATTTT GACACAATGG GTCACCATTT 9454 .......... .......... .......... .......... .......... .......... 120 ATGAATTTCC AATACAAACT TCAAAATTTT GAACGATTAA AGTTATATGT AAGGAAAATG 9394 .......... .......... .......... .......... .......... .......... 120 CACAAGTACC TCTCAATCTA TGTCCGAAAT TTAATATGCC AATTCTAGTA TATCAGATAT 9334 .......... .......... .......... .......... .......... .......... 120 CAGCCACTAC AACTAAGACC AAATAACAAA CTACCGCTAG AAAATCATAT TTGAGAGATA 9274 .......... .......... .......... .......... .......... .......... 120 AAAAACATGT AGCATTCATC CCGGTATGAA CTTTTGGAGA ACTTTTGGAG AATTTTAGCG 9214 .......... .......... .......... .......... .......... .......... 120 GCTACTGAAA TTTTCACCTT GTTGATAAGG GTTAGATTCC CCCTCTTGTT TCCCTTCTTT 9154 .......... .......... .......... .......... .......... .......... 120 ATTTTTAACT CTCACTTTGT TGGGATGGTT TTCACATATC GTATTATATT GTATTATATT 9094 .......... .......... .......... .......... .......... .......... 120 AACTTGATGA ATACAATCTT TGGATATATT GTATCGTTTT TCATCGCTAC ATAACATCAT 9034 .......... .......... .......... .......... .......... .......... 120 ACACGAGCAA TTTTGAAGGA CAAACTTATA AGAAAAGTAA GGTATTTGGT AGAGCTAATA 8974 .......... .......... .......... .......... .......... .......... 120 TAAAAAAGTA CAGTGAAAGA ATTAAATAGG ATTATTATTT TAAAAAAGAA GAAGAAATAA 8914 .......... .......... .......... .......... .......... .......... 120 GGTAACGATG CAATCATCGG TTGTTACATA AGACTTTTCA TCCTTATGTA ACAAGGAATT 8854 .......... .......... .......... .......... .......... .......... 120 TTATGATATG ATACGATAAA AATTAAAAAC AATCAAAACA AAACAAATAT TATATATATA 8794 .......... .......... .......... .......... .......... .......... 120 TTTAAACTAA CAATACAGTA TAAACTTTTT TCATCACATT AATAAAAAAA TTGATTTTTT 8734 .......... .......... .......... .......... .......... .......... 120 AAATATTTTT ATTTAAAGTT TTCATTTTTA AAATATTGAG TTGATCTCAA TCCGATTTAA 8674 .......... .......... .......... .......... .......... .......... 120 TTTAACTTCA AAATTAGGTT AGGATATATT CATTAAATTT TTTTTGATTC AATACATTTT 8614 .......... .......... .......... .......... .......... .......... 120 TATGTGGTTA AGTCATTTTA AAATGCATTA ACCAATATAG TCAAGTAAAA GGTCAAACAA 8554 .......... .......... .......... .......... .......... .......... 120 ACAAATTGAA ACGGAGAAAG TATTATCATA CGAAGATTCA AATTTTTGAT CCTAGTATAG 8494 .......... .......... .......... .......... .......... .......... 120 TACTACAATA GAACAGTAAC ATACATAAAA AGAAGAAAGT TAAGCCCATC AATATTTATA 8434 .......... .......... .......... .......... .......... .......... 120 ACATCAAACA TTTTAACATA AACTTTAAAA GATAGACATT TATTTCATGA AAAGAAGGCA 8374 .......... .......... .......... .......... .......... .......... 120 ATAACTATAG CCTCCCTTGT AAACAAACTA GAATACAATA AGGAAGTATA CTTCCTTTTG 8314 | |||||| | | | ||||| || | |||| | | ||||| CTTACTATAA TATAAATAAT AAACACACAA AAATA-TAGA AGGAA..... .......... 164 AAAATAAGCC CACAAAACAT CAAATAATAC ACTGAAAGAA ATTGAACTAT ATGAATTGAA 8254 |||||| | | ||||| | || || || ||| | .......... .......... .AAATAA-A- ATTGAAA-AT ATCTAAATA- ATGGAAAAGC 199 AATTTGGCTT ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC 8194 ||| || || || ||||| ||||| |||| |||||||||| |||||||||| ||| |||||| AATATGATTT ATGCACATTG GAAGTCCTTG GGTGCATATT TGCCACAATT GTTGAGCAAC 259 AAGCTAAGTG AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG 8134 ||||| |||| ||||||| | |||||||||| || ||||||| ||||||||| |||||||||| AAGCTGAGTG AAAGTGGAAG ATTTAGATTA ATACCCAACA AATTGGCTTT AAGGGCAGTG 319 CAAAGGCAAA CAGCAGCATC AAGATCAACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC 8074 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||| |||||| CAAAGGCAAA CAGCAGCATC AAGGTCAACA AGTCCTTCAA TTAAAGAGCA ACATTGAGTC 379 TTGGCTGGAC TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA 8014 |||| ||||| ||||||||| || ||||||| ||||| |||| |||| ||||| ||||||||| TTGGATGGAC TACTTCCAAT AATAAGGTGC AATAAGTCAC CCAACAAATT TGCACAAGCA 439 TTTAGTTTTA GTGTGTCCTT TGGGCACTTA CCCT 7980 ||||| |||| |||||||||| |||||||| | |||| TTTAGCTTTA GTGTGTCCTT TGGGCACTCA CCCT 473 hqPGS_C08HBa0060C12.1-_SGN-E288121+ (8373 8329,8292 7980) ******************************************************************************** EST sequence 354 +strand 418 n (File: SGN-E280965+) 1 TTTATTACAA ATACAAATAA TTGGATACTT ACTAATAGTA AACAAAGGCT AACGAGCCTA 61 GGCTTTCTTA CTATAATATA AATAATAAAC ACACAAAAAT ATAGAAGGAA AAATAAAATT 121 GAAAATATCT AAATAATGGA AAAGCAATAT GATTTATGCA CATTGGAAGT CCTTGGGTGC 181 ATATTTGCCA CAATTGTTGA GCAACAAGCT GAGTGAAAGT GGAAGATTTA GATTAATACC 241 CAACAAATTG GCTTTAAGGG CAGTGCAAAG GCAAACAGCA GCATCAAGGT CAACAAGTCC 301 TTCAATTAAA GAGCAACATT GAGTCTTGGA TGGACTACTT CCAATAATAA GGTGCAATAA 361 GTCACCCAAC AAATTTGCAC AAGCATTTAG CTTTAGTGTG TCCTTTGGGC ACTCACCC Predicted gene structure (within gDNA segment 11212 to 6471): Exon 1 10457 10450 ( 8 n); cDNA 78 85 ( 8 n); score: 0.875 Intron 1 10449 8355 (2095 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 8354 8329 ( 26 n); cDNA 86 110 ( 25 n); score: 0.769 Intron 2 8328 8293 ( 36 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 8292 7981 ( 312 n); cDNA 111 418 ( 308 n); score: 0.878 MATCH C08HBa0060C12.1- SGN-E280965+ 0.878 346 0.828 C PGS_C08HBa0060C12.1-_SGN-E280965+ (10457 10450,8354 8329,8292 7981) Alignment (genomic DNA sequence = upper lines): ATACATAAAA GAGTGGTGAG CGAGATGGGA GAGAGGTGAG GGAGGCTAAT GAGATTCGTC 10398 ||| |||| ATAAATAA.. .......... .......... .......... .......... .......... 85 TATGTATCCC AAATACATGC AAATCCACTT GAATACAATG TATCTAAAAT AAACTACACC 10338 .......... .......... .......... .......... .......... .......... 85 TAATTTGCCC CATATACTTC AAGGTACATG TATCTAGACA TAGCTAGACG CACCAATATC 10278 .......... .......... .......... .......... .......... .......... 85 TGATAAGATT TGTAATATTG TAAAGAAAAG TATACATCTA AGTAATAAAC TTGTAAACTA 10218 .......... .......... .......... .......... .......... .......... 85 GTGAAATTAC TATAAGTTTC CTATAAAATT CTACTAGTGT GAATGGTTGA GAATATGGGC 10158 .......... .......... .......... .......... .......... .......... 85 CAAATAAATA TTGGATGTGG TGTGGATAAT TTATGTAGGC TCAATTCAAG ATACAATACT 10098 .......... .......... .......... .......... .......... .......... 85 ATAGAGGCCC AAAATTGCTA ATGGGGTAGG AACTTGTGAT TCTCTTTACC ATTCAGGCAA 10038 .......... .......... .......... .......... .......... .......... 85 AATCTTATAT TTTCCGGTAA AAAATAGTTG GTGTAGTTCA TCAAAAGAGT AATATCACGA 9978 .......... .......... .......... .......... .......... .......... 85 GCTCAATTAC TACGCATTCC ATGATATGTG TCAAAAATTG TCATGTCAGC GAATTGCGTC 9918 .......... .......... .......... .......... .......... .......... 85 TAATCAACAC ACTATAAGTA AGTTTTGGTG CAAAATTAAA ATAGACTGTA GAACTGTAGT 9858 .......... .......... .......... .......... .......... .......... 85 AACGACATAC AGAATATGAA CAACTCGATC CTAGAAAATA TAAACTTACA ATAGAGTACA 9798 .......... .......... .......... .......... .......... .......... 85 TTATTATTAG TAGTATTAGT ATTAGTATTA TTAAATAGTA TAGAAAATGG CTACTGTGAT 9738 .......... .......... .......... .......... .......... .......... 85 AATTTTGTCC GTGGAGATTT ATTTATTTAT AATTTTTGTG TTGAGATATA TAAGTAGGGT 9678 .......... .......... .......... .......... .......... .......... 85 TGTTTATAAA TGCACTTAAT TTATATAGGG AGAATTTATG CATCGTTAAT TAATAAACAA 9618 .......... .......... .......... .......... .......... .......... 85 TACATAGTTC ACCTAAGCAA TTTTTGAGAG AGAGATTAAT ACTATTATAG AATAATTTGT 9558 .......... .......... .......... .......... .......... .......... 85 TTCTGCCTTC TCGAAAACAA AATACAATCA CTATAAGACA ATTGAATATG TATATTGATT 9498 .......... .......... .......... .......... .......... .......... 85 TAATTTAGGC GTATGTAGGA TTTTGACACA ATGGGTCACC ATTTATGAAT TTCCAATACA 9438 .......... .......... .......... .......... .......... .......... 85 AACTTCAAAA TTTTGAACGA TTAAAGTTAT ATGTAAGGAA AATGCACAAG TACCTCTCAA 9378 .......... .......... .......... .......... .......... .......... 85 TCTATGTCCG AAATTTAATA TGCCAATTCT AGTATATCAG ATATCAGCCA CTACAACTAA 9318 .......... .......... .......... .......... .......... .......... 85 GACCAAATAA CAAACTACCG CTAGAAAATC ATATTTGAGA GATAAAAAAC ATGTAGCATT 9258 .......... .......... .......... .......... .......... .......... 85 CATCCCGGTA TGAACTTTTG GAGAACTTTT GGAGAATTTT AGCGGCTACT GAAATTTTCA 9198 .......... .......... .......... .......... .......... .......... 85 CCTTGTTGAT AAGGGTTAGA TTCCCCCTCT TGTTTCCCTT CTTTATTTTT AACTCTCACT 9138 .......... .......... .......... .......... .......... .......... 85 TTGTTGGGAT GGTTTTCACA TATCGTATTA TATTGTATTA TATTAACTTG ATGAATACAA 9078 .......... .......... .......... .......... .......... .......... 85 TCTTTGGATA TATTGTATCG TTTTTCATCG CTACATAACA TCATACACGA GCAATTTTGA 9018 .......... .......... .......... .......... .......... .......... 85 AGGACAAACT TATAAGAAAA GTAAGGTATT TGGTAGAGCT AATATAAAAA AGTACAGTGA 8958 .......... .......... .......... .......... .......... .......... 85 AAGAATTAAA TAGGATTATT ATTTTAAAAA AGAAGAAGAA ATAAGGTAAC GATGCAATCA 8898 .......... .......... .......... .......... .......... .......... 85 TCGGTTGTTA CATAAGACTT TTCATCCTTA TGTAACAAGG AATTTTATGA TATGATACGA 8838 .......... .......... .......... .......... .......... .......... 85 TAAAAATTAA AAACAATCAA AACAAAACAA ATATTATATA TATATTTAAA CTAACAATAC 8778 .......... .......... .......... .......... .......... .......... 85 AGTATAAACT TTTTTCATCA CATTAATAAA AAAATTGATT TTTTAAATAT TTTTATTTAA 8718 .......... .......... .......... .......... .......... .......... 85 AGTTTTCATT TTTAAAATAT TGAGTTGATC TCAATCCGAT TTAATTTAAC TTCAAAATTA 8658 .......... .......... .......... .......... .......... .......... 85 GGTTAGGATA TATTCATTAA ATTTTTTTTG ATTCAATACA TTTTTATGTG GTTAAGTCAT 8598 .......... .......... .......... .......... .......... .......... 85 TTTAAAATGC ATTAACCAAT ATAGTCAAGT AAAAGGTCAA ACAAACAAAT TGAAACGGAG 8538 .......... .......... .......... .......... .......... .......... 85 AAAGTATTAT CATACGAAGA TTCAAATTTT TGATCCTAGT ATAGTACTAC AATAGAACAG 8478 .......... .......... .......... .......... .......... .......... 85 TAACATACAT AAAAAGAAGA AAGTTAAGCC CATCAATATT TATAACATCA AACATTTTAA 8418 .......... .......... .......... .......... .......... .......... 85 CATAAACTTT AAAAGATAGA CATTTATTTC ATGAAAAGAA GGCAATAACT ATAGCCTCCC 8358 .......... .......... .......... .......... .......... .......... 85 TTGTAAACAA ACTAGAATAC AATAAGGAAG TATACTTCCT TTTGAAAATA AGCCCACAAA 8298 |||||| || | |||| | |||||| ...TAAACAC ACAAAAATA- TAGAAGGAA. .......... .......... .......... 110 ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT TGAAAATTTG GCTTATTTGC 8238 ||||| | | | |||| | | || || || ||| | ||| || |||| | .....AAATA A-A-ATTGAA A-ATATCTAA ATA-ATGGAA AAGCAATATG ATTTATGCAC 161 ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG 8178 ||||||||| |||||||||| |||||||||| ||||||| || ||||||||| |||||||||| ATTGGAAGTC CTTGGGTGCA TATTTGCCAC AATTGTTGAG CAACAAGCTG AGTGAAAGTG 221 GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG 8118 | | |||||| |||||| ||| |||| ||||| |||||||||| |||||||||| |||||||||| GAAGATTTAG ATTAATACCC AACAAATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG 281 CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC 8058 ||||||| || |||||||||| |||||||||| ||||||| || |||||||| | |||||||||| CATCAAGGTC AACAAGTCCT TCAATTAAAG AGCAACATTG AGTCTTGGAT GGACTACTTC 341 CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT 7998 ||| || ||| ||||||||| |||||||| | |||| ||||| ||||||||| |||||||||| CAATAATAAG GTGCAATAAG TCACCCAACA AATTTGCACA AGCATTTAGC TTTAGTGTGT 401 CCTTTGGGCA CTTACCC 7981 |||||||||| || |||| CCTTTGGGCA CTCACCC 418 hqPGS_C08HBa0060C12.1-_SGN-E280965+ (8354 8329,8292 7981) ******************************************************************************** EST sequence 59 -strand 478 n (File: SGN-E305779-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT NAANAATAAT 61 TCCTTATTTA ATAGATGTCA AATTTATTAC AAATACAAAT AATTGGATAC TTACTAATAG 121 TAAACAAAGG CTAACGAGCC TAGGCTTTCT TACTATAATA TAAATAATAA ACACACAAAA 181 ATATAGAAGG AAAAATAAAA TTGAAAATAT CTAAATAATG GAAAAGCAAT ATGATTTATG 241 CACATTGGAA GTCCTTGGGT GCATATTTGC CACAATTGTT GAGCAACAAG CTGAGTGAAA 301 GTGGAAGATT TAGATTAATA CCCAACAAAT TGGCTTTAAG GGCAGTGCAA AGGCAAACAG 361 CAGCATCAAG GTCAACAAGT CCTTCAATTA AAGAGCAACA TTGAGTCTTG GATGGACTAC 421 TTCCAATAAT AAGGTGCAAT AAGTCACCCA ACAAATTTGC ACAAGCATTT AGCTTTAG Predicted gene structure (within gDNA segment 12642 to 6701): Exon 1 11872 11824 ( 49 n); cDNA 71 119 ( 49 n); score: 0.571 Intron 1 11823 10560 (1264 n); Pd: 0.826 (s: 0.57), Pa: 0.817 (s: 0) Exon 2 10559 10550 ( 10 n); cDNA 120 129 ( 10 n); score: 0.700 Intron 2 10549 10414 ( 136 n); Pd: 0.974 (s: 0), Pa: 0.000 (s: 0) Exon 3 10413 10395 ( 19 n); cDNA 130 148 ( 19 n); score: 0.684 Intron 3 10394 8374 (2021 n); Pd: 0.560 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 8373 8329 ( 45 n); cDNA 149 192 ( 44 n); score: 0.644 Intron 4 8328 8293 ( 36 n); Pd: 0.900 (s: 0.64), Pa: 0.000 (s: 0.64) Exon 5 8292 8003 ( 290 n); cDNA 193 478 ( 286 n); score: 0.872 PPA cDNA 50 1 MATCH C08HBa0060C12.1- SGN-E305779- 0.872 413 0.864 C PGS_C08HBa0060C12.1-_SGN-E305779- (11872 11824,10559 10550,10413 10395,8373 8329,8292 8003) Alignment (genomic DNA sequence = upper lines): ATCGATACCA AACTCATTTT AAAATCAAAG ATCTATTAAC GAATGAATGG TTTGTAACAA 11813 || ||| || || | ||| ||| |||| | | || | ||| ATAGATGTCA AATTTATTAC AAATACAAAT AATTGGATAC TTACTAATA. .......... 119 TATTTTTCAC TGTAACAATA TTTTTGTCGT AATTAATTAC AATAATATGA CATGACAAAC 11753 .......... .......... .......... .......... .......... .......... 119 TAATAGTACA AGAGGAGTAG TTAATAATGA AGATTTTCAC AGCAGAGTTA AGATCTTTTA 11693 .......... .......... .......... .......... .......... .......... 119 CTTATTAAAA TAAAATTTTC TCATAAAAAA ATAATAGAAG TAATTATTTT TTAGTATAAT 11633 .......... .......... .......... .......... .......... .......... 119 AATATAAGTC CCGCCGCAAT CTCCGGCCAA TTGTAAATTT GTTTTTCTCT TTAATTAATT 11573 .......... .......... .......... .......... .......... .......... 119 ATTATATCTA GTGAGACAAT TTTTTAAAAA AAAATCATTT TCTATTACCT GCCGTAGACC 11513 .......... .......... .......... .......... .......... .......... 119 AAAATATATC ATGAGTGGAC AGGACTGCAA TTATTTTTTC CTATTTATAA TCTTTTACGT 11453 .......... .......... .......... .......... .......... .......... 119 ATTTGGTTTT TGTTGGAATG CATGCATGAA TAGTGTTGGT GAAAAAAATA TCACGTTTGG 11393 .......... .......... .......... .......... .......... .......... 119 GGTTGTTTGG GTGAAGGAAT AAAAGTATCA GACGTATGGA TTTTAGATTT GAAGTTTATA 11333 .......... .......... .......... .......... .......... .......... 119 AATTTTGTAA TTATTTTTAA TTTAACGTAA ATAATATAAT AATAACTGAG TTTATAATAA 11273 .......... .......... .......... .......... .......... .......... 119 CTTAACTATA AATAATATAG TAACAACTTA ATAGATTGAC TTAAAATTTA ATTTTTAGAG 11213 .......... .......... .......... .......... .......... .......... 119 GTAATTAAGA AACATTTAAG AAATTGTAAT ATTTTATTGA ACAATTTTCA TTTACTATCA 11153 .......... .......... .......... .......... .......... .......... 119 TTAATATTTT AATAGTTTTA AGTAATTATT TTAGTAAAAA ATGCTCTCAA TAATATGTAA 11093 .......... .......... .......... .......... .......... .......... 119 AAAGTTAAGA TTAAATTTGC AATCACATAT AATCACAAAC CGCTCTCGCC TGCTGCACCA 11033 .......... .......... .......... .......... .......... .......... 119 ACATCTTTTT CACCCCGCAC AATCTAAAAC CTGCTCCACC CCACGTAACC ACAAACCCAC 10973 .......... .......... .......... .......... .......... .......... 119 CCCGCTTCGC ATCCATCCCG CCGCATTGCC AGATAAAAAA TTAAAGATCA ATGCATTCGA 10913 .......... .......... .......... .......... .......... .......... 119 GGATGATTTG TGCAAAAATT AAAGATTTTT GGATTCTTTA TCAAATGTGT GATTTGCGGG 10853 .......... .......... .......... .......... .......... .......... 119 TCAGTGAGCA CGTGAAGCCC AACTGGCCAC GAGAAGCCTG ATGAGTATGG GCCCAAAGAT 10793 .......... .......... .......... .......... .......... .......... 119 TCCCTTATAT TGGGCCTATT GTGGGCCCAG AAGTCAATGT AACAGTGGTG AGGCATTTTG 10733 .......... .......... .......... .......... .......... .......... 119 GGGAAACAAA GAAGGAAAAT TACATAATTA GACATGCTCC ACGACCATAT ATACTTTTAT 10673 .......... .......... .......... .......... .......... .......... 119 CACCTATATT TTCAAAATAT TACGTGTTTT GTCATTAATT AAAGTTTCCT ACCGTATTTA 10613 .......... .......... .......... .......... .......... .......... 119 GAAAGATACA CCTAGATACA CGTATTTTTG CTATCAAGTA CACACTAAAA TAGGGAGAGA 10553 | | | | .......... .......... .......... .......... .......... ...GTAAACA 126 AAGGCAAGCT AGAAGGGATC CCAAATACAT TTGAATCATG CCAAAATCAT ACATATACGT 10493 ||| AAG....... .......... .......... .......... .......... .......... 129 ATATCAATGT GATTCATATG TATCTTCAAT ATCAGATACA TAAAAGAGTG GTGAGCGAGA 10433 .......... .......... .......... .......... .......... .......... 129 TGGGAGAGAG GTGAGGGAGG CTAATGAGAT TCGTCTATGT ATCCCAAATA CATGCAAATC 10373 | |||| ||| | | || | .......... .........G CTAACGAGCC TAGGCTTT.. .......... .......... 148 CACTTGAATA CAATGTATCT AAAATAAACT ACACCTAATT TGCCCCATAT ACTTCAAGGT 10313 .......... .......... .......... .......... .......... .......... 148 ACATGTATCT AGACATAGCT AGACGCACCA ATATCTGATA AGATTTGTAA TATTGTAAAG 10253 .......... .......... .......... .......... .......... .......... 148 AAAAGTATAC ATCTAAGTAA TAAACTTGTA AACTAGTGAA ATTACTATAA GTTTCCTATA 10193 .......... .......... .......... .......... .......... .......... 148 AAATTCTACT AGTGTGAATG GTTGAGAATA TGGGCCAAAT AAATATTGGA TGTGGTGTGG 10133 .......... .......... .......... .......... .......... .......... 148 ATAATTTATG TAGGCTCAAT TCAAGATACA ATACTATAGA GGCCCAAAAT TGCTAATGGG 10073 .......... .......... .......... .......... .......... .......... 148 GTAGGAACTT GTGATTCTCT TTACCATTCA GGCAAAATCT TATATTTTCC GGTAAAAAAT 10013 .......... .......... .......... .......... .......... .......... 148 AGTTGGTGTA GTTCATCAAA AGAGTAATAT CACGAGCTCA ATTACTACGC ATTCCATGAT 9953 .......... .......... .......... .......... .......... .......... 148 ATGTGTCAAA AATTGTCATG TCAGCGAATT GCGTCTAATC AACACACTAT AAGTAAGTTT 9893 .......... .......... .......... .......... .......... .......... 148 TGGTGCAAAA TTAAAATAGA CTGTAGAACT GTAGTAACGA CATACAGAAT ATGAACAACT 9833 .......... .......... .......... .......... .......... .......... 148 CGATCCTAGA AAATATAAAC TTACAATAGA GTACATTATT ATTAGTAGTA TTAGTATTAG 9773 .......... .......... .......... .......... .......... .......... 148 TATTATTAAA TAGTATAGAA AATGGCTACT GTGATAATTT TGTCCGTGGA GATTTATTTA 9713 .......... .......... .......... .......... .......... .......... 148 TTTATAATTT TTGTGTTGAG ATATATAAGT AGGGTTGTTT ATAAATGCAC TTAATTTATA 9653 .......... .......... .......... .......... .......... .......... 148 TAGGGAGAAT TTATGCATCG TTAATTAATA AACAATACAT AGTTCACCTA AGCAATTTTT 9593 .......... .......... .......... .......... .......... .......... 148 GAGAGAGAGA TTAATACTAT TATAGAATAA TTTGTTTCTG CCTTCTCGAA AACAAAATAC 9533 .......... .......... .......... .......... .......... .......... 148 AATCACTATA AGACAATTGA ATATGTATAT TGATTTAATT TAGGCGTATG TAGGATTTTG 9473 .......... .......... .......... .......... .......... .......... 148 ACACAATGGG TCACCATTTA TGAATTTCCA ATACAAACTT CAAAATTTTG AACGATTAAA 9413 .......... .......... .......... .......... .......... .......... 148 GTTATATGTA AGGAAAATGC ACAAGTACCT CTCAATCTAT GTCCGAAATT TAATATGCCA 9353 .......... .......... .......... .......... .......... .......... 148 ATTCTAGTAT ATCAGATATC AGCCACTACA ACTAAGACCA AATAACAAAC TACCGCTAGA 9293 .......... .......... .......... .......... .......... .......... 148 AAATCATATT TGAGAGATAA AAAACATGTA GCATTCATCC CGGTATGAAC TTTTGGAGAA 9233 .......... .......... .......... .......... .......... .......... 148 CTTTTGGAGA ATTTTAGCGG CTACTGAAAT TTTCACCTTG TTGATAAGGG TTAGATTCCC 9173 .......... .......... .......... .......... .......... .......... 148 CCTCTTGTTT CCCTTCTTTA TTTTTAACTC TCACTTTGTT GGGATGGTTT TCACATATCG 9113 .......... .......... .......... .......... .......... .......... 148 TATTATATTG TATTATATTA ACTTGATGAA TACAATCTTT GGATATATTG TATCGTTTTT 9053 .......... .......... .......... .......... .......... .......... 148 CATCGCTACA TAACATCATA CACGAGCAAT TTTGAAGGAC AAACTTATAA GAAAAGTAAG 8993 .......... .......... .......... .......... .......... .......... 148 GTATTTGGTA GAGCTAATAT AAAAAAGTAC AGTGAAAGAA TTAAATAGGA TTATTATTTT 8933 .......... .......... .......... .......... .......... .......... 148 AAAAAAGAAG AAGAAATAAG GTAACGATGC AATCATCGGT TGTTACATAA GACTTTTCAT 8873 .......... .......... .......... .......... .......... .......... 148 CCTTATGTAA CAAGGAATTT TATGATATGA TACGATAAAA ATTAAAAACA ATCAAAACAA 8813 .......... .......... .......... .......... .......... .......... 148 AACAAATATT ATATATATAT TTAAACTAAC AATACAGTAT AAACTTTTTT CATCACATTA 8753 .......... .......... .......... .......... .......... .......... 148 ATAAAAAAAT TGATTTTTTA AATATTTTTA TTTAAAGTTT TCATTTTTAA AATATTGAGT 8693 .......... .......... .......... .......... .......... .......... 148 TGATCTCAAT CCGATTTAAT TTAACTTCAA AATTAGGTTA GGATATATTC ATTAAATTTT 8633 .......... .......... .......... .......... .......... .......... 148 TTTTGATTCA ATACATTTTT ATGTGGTTAA GTCATTTTAA AATGCATTAA CCAATATAGT 8573 .......... .......... .......... .......... .......... .......... 148 CAAGTAAAAG GTCAAACAAA CAAATTGAAA CGGAGAAAGT ATTATCATAC GAAGATTCAA 8513 .......... .......... .......... .......... .......... .......... 148 ATTTTTGATC CTAGTATAGT ACTACAATAG AACAGTAACA TACATAAAAA GAAGAAAGTT 8453 .......... .......... .......... .......... .......... .......... 148 AAGCCCATCA ATATTTATAA CATCAAACAT TTTAACATAA ACTTTAAAAG ATAGACATTT 8393 .......... .......... .......... .......... .......... .......... 148 ATTTCATGAA AAGAAGGCAA TAACTATAGC CTCCCTTGTA AACAAACTAG AATACAATAA 8333 | |||||| | | || |||| || | |||| | || .......... .........C TTACTATAAT ATAAATAATA AACACACAAA AATA-TAGAA 188 GGAAGTATAC TTCCTTTTGA AAATAAGCCC ACAAAACATC AAATAATACA CTGAAAGAAA 8273 |||| |||||| | | ||||| | | GGAA...... .......... .......... .......... AAATAA-A-A TTGAAA-ATA 209 TTGAACTATA TGAATTGAAA ATTTGGCTTA TTTGCATTGG AAGTTCTTGG GTGCATATTT 8213 | || || | || | | || || ||| | |||||| |||| ||||| |||||||||| TCTAAATA-A TGGAAAAGCA ATATGATTTA TGCACATTGG AAGTCCTTGG GTGCATATTT 268 GCCACAATTG TTAAGCAACA AGCTAAGTGA AAGTGGGATA TTTAGATTAA TTCCCAACAC 8153 |||||||||| || ||||||| |||| ||||| |||||| | | |||||||||| | ||||||| GCCACAATTG TTGAGCAACA AGCTGAGTGA AAGTGGAAGA TTTAGATTAA TACCCAACAA 328 ATTGGCTTTA AGGGCAGTGC AAAGGCAAAC AGCAGCATCA AGATCAACAA GTCCTTCAAT 8093 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ATTGGCTTTA AGGGCAGTGC AAAGGCAAAC AGCAGCATCA AGGTCAACAA GTCCTTCAAT 388 TAAAGAGCAA CACTGAGTCT TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC 8033 |||||||||| || ||||||| ||| |||||| |||||||| | | |||||||| |||| ||||| TAAAGAGCAA CATTGAGTCT TGGATGGACT ACTTCCAATA ATAAGGTGCA ATAAGTCACC 448 CAATAAATTG GCACAAGCAT TTAGTTTTAG 8003 ||| ||||| |||||||||| |||| ||||| CAACAAATTT GCACAAGCAT TTAGCTTTAG 478 hqPGS_C08HBa0060C12.1-_SGN-E305779- (8373 8329,8292 8003) ******************************************************************************** EST sequence 211 -strand 552 n (File: SGN-E308798-) 1 TTTGAAAATA AGCCCACAAA ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT 61 TGAAAATTTG GCTTATTTGC ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG 121 CAACAAGCTA AGTGAAAGTG GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC 181 AGTGCAAAGG CAAACAGCAG CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG 241 AGTCTTGGCT GGACTACTTC CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA 301 AGCATTTAGT TTTAGTGTGT CCTTTGGGCA CTTACCCTTT GATGATGGGG TGGAGGGGGT 361 AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG GGGTGGTGGG CATGGGACAT TAGTGGAACT 421 AACCATAGTG AAAAAAAGAA TGTTCAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA 481 CTTAACCATT TTTTCAAAGT TAAGAAGTTA GCACTCTCAA CAATTGAATG TGGCTAATTA 541 GTAGTGAGAA AA Predicted gene structure (within gDNA segment 8927 to 7166): Exon 1 8317 7766 ( 552 n); cDNA 1 552 ( 552 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E308798- 1.000 552 1.000 C PGS_C08HBa0060C12.1-_SGN-E308798- (8317 7766) Alignment (genomic DNA sequence = upper lines): TTTGAAAATA AGCCCACAAA ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT 8258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAAAATA AGCCCACAAA ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT 60 TGAAAATTTG GCTTATTTGC ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG 8198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAATTTG GCTTATTTGC ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG 120 CAACAAGCTA AGTGAAAGTG GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC 8138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAGCTA AGTGAAAGTG GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC 180 AGTGCAAAGG CAAACAGCAG CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG 8078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGCAAAGG CAAACAGCAG CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG 240 AGTCTTGGCT GGACTACTTC CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA 8018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTTGGCT GGACTACTTC CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA 300 AGCATTTAGT TTTAGTGTGT CCTTTGGGCA CTTACCCTTT GATGATGGGG TGGAGGGGGT 7958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATTTAGT TTTAGTGTGT CCTTTGGGCA CTTACCCTTT GATGATGGGG TGGAGGGGGT 360 AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG GGGTGGTGGG CATGGGACAT TAGTGGAACT 7898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG GGGTGGTGGG CATGGGACAT TAGTGGAACT 420 AACCATAGTG AAAAAAAGAA TGTTCAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA 7838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCATAGTG AAAAAAAGAA TGTTCAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA 480 CTTAACCATT TTTTCAAAGT TAAGAAGTTA GCACTCTCAA CAATTGAATG TGGCTAATTA 7778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAACCATT TTTTCAAAGT TAAGAAGTTA GCACTCTCAA CAATTGAATG TGGCTAATTA 540 GTAGTGAGAA AA 7766 |||||||||| || GTAGTGAGAA AA 552 hqPGS_C08HBa0060C12.1-_SGN-E308798- (8317 7766) ******************************************************************************** EST sequence 69 -strand 666 n (File: SGN-E539620-) 1 TTTTTTTTTT TTTTTTTTTT ACTTTAAAAG ATAGACATTT ATTTCATGAA AAGAAGGCAA 61 TAACTATAGC CTCCCTTGTA AACAAACTAG AATACAATAA GGAAGTATAC TTCCTTTTGA 121 AAATAAGCCC ACAAAACATC AAATAATACA CTGAAAGAAA TTGAACTATA TGAATTGAAA 181 ATTTGGCTTA TTTGCATTGG AAGTTCTTGG GTGCATATTT GCCACAATTG TTAAGCAACA 241 AGCTAAGTGA AAGTGGGATA TTTAGATTAA TTCCCAACAC ATTGGCTTTA AGGGCAGTGC 301 AAAGGCAAAC AGCAGCATCA AGATCAACAA GTCCTTCAAT TAAAGAGCAA CACTGAGTCT 361 TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC CAATAAATTG GCACAAGCAT 421 TTAGTTTTAG TGTGTCCTTT GGGCACTTAC CCTTTGATGA TGGGGTGGAG GGGGTAGGGG 481 TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG GTGGGCATGG GACATTAGTG GAACTAACCA 541 TAGTGAAAAA AAGAATGTTC AATGTGAGAA CAAGGGCAAT TGAGTATGCA CCAAACTTAA 601 CCATTTTTTC AAAGTTAAGA AGTTAGCACT CTCAACAATT GAATGTGGCT AATTAGTAGT 661 GAGAAA Predicted gene structure (within gDNA segment 9222 to 7167): Exon 1 8410 7767 ( 644 n); cDNA 23 666 ( 644 n); score: 1.000 PPA cDNA 20 1 MATCH C08HBa0060C12.1- SGN-E539620- 1.000 644 0.967 C PGS_C08HBa0060C12.1-_SGN-E539620- (8410 7767) Alignment (genomic DNA sequence = upper lines): TTTAAAAGAT AGACATTTAT TTCATGAAAA GAAGGCAATA ACTATAGCCT CCCTTGTAAA 8351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAAAGAT AGACATTTAT TTCATGAAAA GAAGGCAATA ACTATAGCCT CCCTTGTAAA 82 CAAACTAGAA TACAATAAGG AAGTATACTT CCTTTTGAAA ATAAGCCCAC AAAACATCAA 8291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTAGAA TACAATAAGG AAGTATACTT CCTTTTGAAA ATAAGCCCAC AAAACATCAA 142 ATAATACACT GAAAGAAATT GAACTATATG AATTGAAAAT TTGGCTTATT TGCATTGGAA 8231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATACACT GAAAGAAATT GAACTATATG AATTGAAAAT TTGGCTTATT TGCATTGGAA 202 GTTCTTGGGT GCATATTTGC CACAATTGTT AAGCAACAAG CTAAGTGAAA GTGGGATATT 8171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTGGGT GCATATTTGC CACAATTGTT AAGCAACAAG CTAAGTGAAA GTGGGATATT 262 TAGATTAATT CCCAACACAT TGGCTTTAAG GGCAGTGCAA AGGCAAACAG CAGCATCAAG 8111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATTAATT CCCAACACAT TGGCTTTAAG GGCAGTGCAA AGGCAAACAG CAGCATCAAG 322 ATCAACAAGT CCTTCAATTA AAGAGCAACA CTGAGTCTTG GCTGGACTAC TTCCAACAAC 8051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACAAGT CCTTCAATTA AAGAGCAACA CTGAGTCTTG GCTGGACTAC TTCCAACAAC 382 AAGGTGCAAT AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTG TGTCCTTTGG 7991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTGCAAT AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTG TGTCCTTTGG 442 GCACTTACCC TTTGATGATG GGGTGGAGGG GGTAGGGGTA GGGTAGTGGG GTTTGGGGTG 7931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTTACCC TTTGATGATG GGGTGGAGGG GGTAGGGGTA GGGTAGTGGG GTTTGGGGTG 502 TGGGGGTGGT GGGCATGGGA CATTAGTGGA ACTAACCATA GTGAAAAAAA GAATGTTCAA 7871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGGTGGT GGGCATGGGA CATTAGTGGA ACTAACCATA GTGAAAAAAA GAATGTTCAA 562 TGTGAGAACA AGGGCAATTG AGTATGCACC AAACTTAACC ATTTTTTCAA AGTTAAGAAG 7811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAGAACA AGGGCAATTG AGTATGCACC AAACTTAACC ATTTTTTCAA AGTTAAGAAG 622 TTAGCACTCT CAACAATTGA ATGTGGCTAA TTAGTAGTGA GAAA 7767 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTAGCACTCT CAACAATTGA ATGTGGCTAA TTAGTAGTGA GAAA 666 hqPGS_C08HBa0060C12.1-_SGN-E539620- (8410 7767) ******************************************************************************** EST sequence 277 -strand 386 n (File: SGN-E390618-) 1 ATTGGTTTTA AGGGTAGAGC AGAGGCAAGC AGCAGCGTCA AGATCAACAA GTCCTTCAAT 61 TAAAGAGCAA CAATGAGTCT TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC 121 CAATAAATTG GCACAAGCAT TTAGTTTTAG TGTGTCCTTT GGGCACTTAC CCTTTGATGA 181 TGGGGTGGAG GGGGTAGGGG TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG GTGGGCATGG 241 GACATTAGTG GAACTAACCA TAGTGAAAAA AAGAATGTTC AATGTGAGAA CAAGGGCAAT 301 TGAGTATGCA CCAAACTTAA CCATTTTTTC AAAGTTAAGA AGTTAGCACT CTCAACAATT 361 GAATGTGGCT AATTAGTAGT GAGAAA Predicted gene structure (within gDNA segment 9095 to 7167): Exon 1 8152 7767 ( 386 n); cDNA 1 386 ( 386 n); score: 0.982 MATCH C08HBa0060C12.1- SGN-E390618- 0.982 386 1.000 C PGS_C08HBa0060C12.1-_SGN-E390618- (8152 7767) Alignment (genomic DNA sequence = upper lines): ATTGGCTTTA AGGGCAGTGC AAAGGCAAAC AGCAGCATCA AGATCAACAA GTCCTTCAAT 8093 ||||| |||| |||| || || | |||||| | |||||| ||| |||||||||| |||||||||| ATTGGTTTTA AGGGTAGAGC AGAGGCAAGC AGCAGCGTCA AGATCAACAA GTCCTTCAAT 60 TAAAGAGCAA CACTGAGTCT TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC 8033 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGAGCAA CAATGAGTCT TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC 120 CAATAAATTG GCACAAGCAT TTAGTTTTAG TGTGTCCTTT GGGCACTTAC CCTTTGATGA 7973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATAAATTG GCACAAGCAT TTAGTTTTAG TGTGTCCTTT GGGCACTTAC CCTTTGATGA 180 TGGGGTGGAG GGGGTAGGGG TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG GTGGGCATGG 7913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGTGGAG GGGGTAGGGG TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG GTGGGCATGG 240 GACATTAGTG GAACTAACCA TAGTGAAAAA AAGAATGTTC AATGTGAGAA CAAGGGCAAT 7853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATTAGTG GAACTAACCA TAGTGAAAAA AAGAATGTTC AATGTGAGAA CAAGGGCAAT 300 TGAGTATGCA CCAAACTTAA CCATTTTTTC AAAGTTAAGA AGTTAGCACT CTCAACAATT 7793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTATGCA CCAAACTTAA CCATTTTTTC AAAGTTAAGA AGTTAGCACT CTCAACAATT 360 GAATGTGGCT AATTAGTAGT GAGAAA 7767 |||||||||| |||||||||| |||||| GAATGTGGCT AATTAGTAGT GAGAAA 386 hqPGS_C08HBa0060C12.1-_SGN-E390618- (8152 7767) ******************************************************************************** EST sequence 20 -strand 471 n (File: SGN-E296331-) 1 CATTGGAAGT TCTTGGGTGC ATATTTGCCA CAATTGTTAA GCAACAAGCT AAGTGAAAGT 61 GGGATATTTA GATTAATTCC CAACACATTG GCTTTAAGGG CAGTGCAAAG GCAAACAGCA 121 GCATCAAGAT CAACAAGTCC TTCAATTAAA GAGCAACACT GAGTCTTGAC TGGACTACTT 181 CCAACAACAA GGTGCAATAA ATCACCCAAT AAATTGGCAC AAGCATTTAG TTTTAGTGTG 241 TCCTTTGGGC ACTTACCCTT TGATGATGGG GTGGAGGGGG TAGGGGTAGG GTAGTGGGGT 301 TTGGGGTGTG GGGGTGGTGG GCATGGGACA TTAGTGGAAC TAACCATAGT GAAAAAAAGA 361 ATGTTCAATG TGAGAACAAG GGCAATTGAG TATGCACCAA ACTTAACCAT TTTTTCAAAG 421 TTAAGAAGTT AGCACTCTCA ACAATTGAAT GTGGCTAATT AGTAGTGAGA A Predicted gene structure (within gDNA segment 8848 to 7168): Exon 1 8238 7768 ( 471 n); cDNA 1 471 ( 471 n); score: 0.998 MATCH C08HBa0060C12.1- SGN-E296331- 0.998 471 1.000 C PGS_C08HBa0060C12.1-_SGN-E296331- (8238 7768) Alignment (genomic DNA sequence = upper lines): CATTGGAAGT TCTTGGGTGC ATATTTGCCA CAATTGTTAA GCAACAAGCT AAGTGAAAGT 8179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGGAAGT TCTTGGGTGC ATATTTGCCA CAATTGTTAA GCAACAAGCT AAGTGAAAGT 60 GGGATATTTA GATTAATTCC CAACACATTG GCTTTAAGGG CAGTGCAAAG GCAAACAGCA 8119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATATTTA GATTAATTCC CAACACATTG GCTTTAAGGG CAGTGCAAAG GCAAACAGCA 120 GCATCAAGAT CAACAAGTCC TTCAATTAAA GAGCAACACT GAGTCTTGGC TGGACTACTT 8059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GCATCAAGAT CAACAAGTCC TTCAATTAAA GAGCAACACT GAGTCTTGAC TGGACTACTT 180 CCAACAACAA GGTGCAATAA ATCACCCAAT AAATTGGCAC AAGCATTTAG TTTTAGTGTG 7999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACAACAA GGTGCAATAA ATCACCCAAT AAATTGGCAC AAGCATTTAG TTTTAGTGTG 240 TCCTTTGGGC ACTTACCCTT TGATGATGGG GTGGAGGGGG TAGGGGTAGG GTAGTGGGGT 7939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTTGGGC ACTTACCCTT TGATGATGGG GTGGAGGGGG TAGGGGTAGG GTAGTGGGGT 300 TTGGGGTGTG GGGGTGGTGG GCATGGGACA TTAGTGGAAC TAACCATAGT GAAAAAAAGA 7879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGGTGTG GGGGTGGTGG GCATGGGACA TTAGTGGAAC TAACCATAGT GAAAAAAAGA 360 ATGTTCAATG TGAGAACAAG GGCAATTGAG TATGCACCAA ACTTAACCAT TTTTTCAAAG 7819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCAATG TGAGAACAAG GGCAATTGAG TATGCACCAA ACTTAACCAT TTTTTCAAAG 420 TTAAGAAGTT AGCACTCTCA ACAATTGAAT GTGGCTAATT AGTAGTGAGA A 7768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTAAGAAGTT AGCACTCTCA ACAATTGAAT GTGGCTAATT AGTAGTGAGA A 471 hqPGS_C08HBa0060C12.1-_SGN-E296331- (8238 7768) ******************************************************************************** EST sequence 235 -strand 656 n (File: SGN-E356684-) 1 TTTTTTTTTT TTTTTTTTTA AAGGATAGCC ATTTATTTCA TGAAAGGAGG CCAATAATTA 61 TAGCTTCCTT GGTAACCAAC TTGGAATCCA ATAGGGAAGT ATCCTTCCTT TTGAAAATAA 121 GCCCACAAAC CATCAATTAA TCCNTTGAAA GAAATTGAAT TATATGAATT GAAAATTTGG 181 CTTATTTGCA TTGGAAGTTC TTGGGTGCAT ATTTGCCACA ATTGTTAAGC AACAAGTTAA 241 GTGAAAGTGG GATATTTAGA TTAATTCCCA ACACATTGGC TTTAAGGGCA GTGCAAAGGC 301 AAACAGCAGC ATCAAGATCA ACAAGTCCTT CAATTAAAGA GCAACACTGA GTCTTGGCTG 361 GACTACTTCC AACAACAAGG TGCAATAAAT CACCCAATAA ATTGGCACAA GCATTTAGTT 421 TTAGTGTGTC CTTTGGGCAC TTACCCTTTG ATGATGGGGT GGAGGGGGTA GGGGTAGGGT 481 AGTGGGGTTT GGGGTGTGGG GGTGGTGGGC ATGGGACATT AGTGGAACTA ACCATAGTGA 541 AAAAAAGAAT GTTCAATGTG AGAACAAGGG CAATTGAGTA TGCACCAAAC TTAACCATTT 601 TTTCAAAGTT AAGAAGTTAG CACTCTCAAC AATTGAATGT GGCTAATTAG TAGTGA Predicted gene structure (within gDNA segment 10476 to 7171): Exon 1 8423 7771 ( 653 n); cDNA 4 656 ( 653 n); score: 0.953 MATCH C08HBa0060C12.1- SGN-E356684- 0.953 653 0.995 C PGS_C08HBa0060C12.1-_SGN-E356684- (8423 7771) Alignment (genomic DNA sequence = upper lines): TTTTAACATA AACTTTAAAA GATAGACATT TATTTCATGA AAAGAAGGCA ATAACTATAG 8364 |||| | |||||| ||||| |||| |||||||||| || || | || |||| ||||| TTTTTTTTTT TTTTTTAAAG GATAGCCATT TATTTCATGA AAGGAGGCCA ATAATTATAG 63 CCTCCCTTGT AAACAAACTA GAATACAATA AGGAAGTATA CTTCCTTTTG AAAATAAGCC 8304 | ||| | || || ||| | |||| ||||| |||||||| |||||||||| |||||||||| CTTCCTTGGT AACCAACTTG GAATCCAATA GGGAAGTATC CTTCCTTTTG AAAATAAGCC 123 CACAAAACAT CAAATAATAC ACTGAAAGAA ATTGAACTAT ATGAATTGAA AATTTGGCTT 8244 |||||| ||| ||| |||| | |||||||| |||||| ||| |||||||||| |||||||||| CACAAACCAT CAATTAATCC NTTGAAAGAA ATTGAATTAT ATGAATTGAA AATTTGGCTT 183 ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC AAGCTAAGTG 8184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC AAGTTAAGTG 243 AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG CAAAGGCAAA 8124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG CAAAGGCAAA 303 CAGCAGCATC AAGATCAACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC TTGGCTGGAC 8064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCATC AAGATCAACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC TTGGCTGGAC 363 TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA TTTAGTTTTA 8004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA TTTAGTTTTA 423 GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGGG GTAGGGTAGT 7944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGGG GTAGGGTAGT 483 GGGGTTTGGG GTGTGGGGGT GGTGGGCATG GGACATTAGT GGAACTAACC ATAGTGAAAA 7884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTTGGG GTGTGGGGGT GGTGGGCATG GGACATTAGT GGAACTAACC ATAGTGAAAA 543 AAAGAATGTT CAATGTGAGA ACAAGGGCAA TTGAGTATGC ACCAAACTTA ACCATTTTTT 7824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTT CAATGTGAGA ACAAGGGCAA TTGAGTATGC ACCAAACTTA ACCATTTTTT 603 CAAAGTTAAG AAGTTAGCAC TCTCAACAAT TGAATGTGGC TAATTAGTAG TGA 7771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CAAAGTTAAG AAGTTAGCAC TCTCAACAAT TGAATGTGGC TAATTAGTAG TGA 656 hqPGS_C08HBa0060C12.1-_SGN-E356684- (8423 7771) ******************************************************************************** EST sequence 8 -strand 189 n (File: SGN-E282983-) 1 GTAGGGGTAG GGTAGTGGGG TTTAAAGTGT GGGGGTGGTG GGCATGGGAC ATTAGTGGAA 61 CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA GGGCAATTGA GTATGCACCA 121 AACTTAACCA TTTTTTCAAA GTTAAGAAGT TAGCACTCTC AACAATTGAA TGTGGCTAAT 181 TAGTAGTGA Predicted gene structure (within gDNA segment 8812 to 7171): Exon 1 7959 7771 ( 189 n); cDNA 1 189 ( 189 n); score: 0.984 MATCH C08HBa0060C12.1- SGN-E282983- 0.984 189 1.000 C PGS_C08HBa0060C12.1-_SGN-E282983- (7959 7771) Alignment (genomic DNA sequence = upper lines): GTAGGGGTAG GGTAGTGGGG TTTGGGGTGT GGGGGTGGTG GGCATGGGAC ATTAGTGGAA 7900 |||||||||| |||||||||| ||| |||| |||||||||| |||||||||| |||||||||| GTAGGGGTAG GGTAGTGGGG TTTAAAGTGT GGGGGTGGTG GGCATGGGAC ATTAGTGGAA 60 CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA GGGCAATTGA GTATGCACCA 7840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA GGGCAATTGA GTATGCACCA 120 AACTTAACCA TTTTTTCAAA GTTAAGAAGT TAGCACTCTC AACAATTGAA TGTGGCTAAT 7780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTAACCA TTTTTTCAAA GTTAAGAAGT TAGCACTCTC AACAATTGAA TGTGGCTAAT 180 TAGTAGTGA 7771 ||||||||| TAGTAGTGA 189 hqPGS_C08HBa0060C12.1-_SGN-E282983- (7959 7771) ******************************************************************************** EST sequence 269 -strand 582 n (File: SGN-E283566-) 1 TAACTATAGC CTCCCTTGTA ACCAATCTAG AATACAATAA GGAAGTATAC TTCCTTTTGA 61 AAATAAGCCC ACAAAACATC AAATAATACA CTGAAAGAAA TTGAACTATA TGAATTGAAA 121 ATTTGGCTTA TTTGCATTGG AAGTTCTTGG GTGCATATTT GCCACAATTG TTAAGCAACA 181 AGCTAAGTGA AAGTGGGATA TTTAGATTAA TTCCCAACAC ATTGGCTTTA AGGGCAGTGC 241 AAAGGCAAAC AGCAGCATCA AGATCAACAA GTCCTTCAAT TAAAGAGCAA CACTGAGTCT 301 TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC CAATAAATTG GCACAAGCAT 361 TTAGTTTTAG TGTGTCCTTT GGGCACTTAC CCTTTGATGA TGGGGTGGAG GGGGTAGGGG 421 TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG GTGGGCATGG GACATTAGTG GAACTAACCA 481 TAGTGAAAAA AAGAATGTTC AATGTGAGAA CAAGGGCAAT TGAGTATGCA CCAAACTTAA 541 CCATTTTTTC AAAGTTAAGA AGTTAGCACT CTCAACAATT GA Predicted gene structure (within gDNA segment 8982 to 7191): Exon 1 8372 7791 ( 582 n); cDNA 1 582 ( 582 n); score: 0.997 MATCH C08HBa0060C12.1- SGN-E283566- 0.997 582 1.000 C PGS_C08HBa0060C12.1-_SGN-E283566- (8372 7791) Alignment (genomic DNA sequence = upper lines): TAACTATAGC CTCCCTTGTA AACAAACTAG AATACAATAA GGAAGTATAC TTCCTTTTGA 8313 |||||||||| |||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| TAACTATAGC CTCCCTTGTA ACCAATCTAG AATACAATAA GGAAGTATAC TTCCTTTTGA 60 AAATAAGCCC ACAAAACATC AAATAATACA CTGAAAGAAA TTGAACTATA TGAATTGAAA 8253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAAGCCC ACAAAACATC AAATAATACA CTGAAAGAAA TTGAACTATA TGAATTGAAA 120 ATTTGGCTTA TTTGCATTGG AAGTTCTTGG GTGCATATTT GCCACAATTG TTAAGCAACA 8193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGCTTA TTTGCATTGG AAGTTCTTGG GTGCATATTT GCCACAATTG TTAAGCAACA 180 AGCTAAGTGA AAGTGGGATA TTTAGATTAA TTCCCAACAC ATTGGCTTTA AGGGCAGTGC 8133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAAGTGA AAGTGGGATA TTTAGATTAA TTCCCAACAC ATTGGCTTTA AGGGCAGTGC 240 AAAGGCAAAC AGCAGCATCA AGATCAACAA GTCCTTCAAT TAAAGAGCAA CACTGAGTCT 8073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCAAAC AGCAGCATCA AGATCAACAA GTCCTTCAAT TAAAGAGCAA CACTGAGTCT 300 TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC CAATAAATTG GCACAAGCAT 8013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTGGACT ACTTCCAACA ACAAGGTGCA ATAAATCACC CAATAAATTG GCACAAGCAT 360 TTAGTTTTAG TGTGTCCTTT GGGCACTTAC CCTTTGATGA TGGGGTGGAG GGGGTAGGGG 7953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTTTAG TGTGTCCTTT GGGCACTTAC CCTTTGATGA TGGGGTGGAG GGGGTAGGGG 420 TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG GTGGGCATGG GACATTAGTG GAACTAACCA 7893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG GTGGGCATGG GACATTAGTG GAACTAACCA 480 TAGTGAAAAA AAGAATGTTC AATGTGAGAA CAAGGGCAAT TGAGTATGCA CCAAACTTAA 7833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGAAAAA AAGAATGTTC AATGTGAGAA CAAGGGCAAT TGAGTATGCA CCAAACTTAA 540 CCATTTTTTC AAAGTTAAGA AGTTAGCACT CTCAACAATT GA 7791 |||||||||| |||||||||| |||||||||| |||||||||| || CCATTTTTTC AAAGTTAAGA AGTTAGCACT CTCAACAATT GA 582 hqPGS_C08HBa0060C12.1-_SGN-E283566- (8372 7791) ******************************************************************************** EST sequence 16 -strand 517 n (File: SGN-E304358-) 1 TTTGAAAATA AGCCCACAAA ACATCGAATA ATACAGTGAG AGAAATTGAA CTATATGAAT 61 TGAAAATTTG GCTTATTTGC ATTGAAAGTT CTTGGGTGCA TATTTGCCAC GATTGTTAAG 121 CAACAAGCTA AGTGAAAGTG GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC 181 AGTGCAAAGG CAAACAGCAG CATCAAGATC AGCAAGTCTT TCAATTAAAG AGCAACGGTG 241 AGTGTTGGCT GGACTACTTC CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA 301 AGCATTTAGT TTTAGTGTGT CCTTTGGGCA CTTACCCTTT GATGATGGGG TGGAGGGGGT 361 AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG GGGTGGTGGG CATGGGACAT TAGTGGAACT 421 AACCATAGTG AAAAAAAGAA TGTTCAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA 481 CTTAACCATT TTTTCAAAGT TAAGAAGTTA GCACTCT Predicted gene structure (within gDNA segment 8927 to 7201): Exon 1 8317 7801 ( 517 n); cDNA 1 517 ( 517 n); score: 0.981 MATCH C08HBa0060C12.1- SGN-E304358- 0.981 517 1.000 C PGS_C08HBa0060C12.1-_SGN-E304358- (8317 7801) Alignment (genomic DNA sequence = upper lines): TTTGAAAATA AGCCCACAAA ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT 8258 |||||||||| |||||||||| ||||| |||| ||||| ||| |||||||||| |||||||||| TTTGAAAATA AGCCCACAAA ACATCGAATA ATACAGTGAG AGAAATTGAA CTATATGAAT 60 TGAAAATTTG GCTTATTTGC ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG 8198 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| TGAAAATTTG GCTTATTTGC ATTGAAAGTT CTTGGGTGCA TATTTGCCAC GATTGTTAAG 120 CAACAAGCTA AGTGAAAGTG GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC 8138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAGCTA AGTGAAAGTG GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC 180 AGTGCAAAGG CAAACAGCAG CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG 8078 |||||||||| |||||||||| |||||||||| | |||||| | |||||||||| |||||| || AGTGCAAAGG CAAACAGCAG CATCAAGATC AGCAAGTCTT TCAATTAAAG AGCAACGGTG 240 AGTCTTGGCT GGACTACTTC CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA 8018 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTGGCT GGACTACTTC CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA 300 AGCATTTAGT TTTAGTGTGT CCTTTGGGCA CTTACCCTTT GATGATGGGG TGGAGGGGGT 7958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATTTAGT TTTAGTGTGT CCTTTGGGCA CTTACCCTTT GATGATGGGG TGGAGGGGGT 360 AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG GGGTGGTGGG CATGGGACAT TAGTGGAACT 7898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG GGGTGGTGGG CATGGGACAT TAGTGGAACT 420 AACCATAGTG AAAAAAAGAA TGTTCAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA 7838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCATAGTG AAAAAAAGAA TGTTCAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA 480 CTTAACCATT TTTTCAAAGT TAAGAAGTTA GCACTCT 7801 |||||||||| |||||||||| |||||||||| ||||||| CTTAACCATT TTTTCAAAGT TAAGAAGTTA GCACTCT 517 hqPGS_C08HBa0060C12.1-_SGN-E304358- (8317 7801) ******************************************************************************** EST sequence 208 -strand 438 n (File: SGN-E308764-) 1 AGTTCTTGGG TGCATATTCG CCACAATTGT TAAGCAACAA GCTAAGTGAA AGTGGGATAT 61 TTAGATTAAT TCCCAACACA TTGGCTTTAA GGGCAGTGTA AAGGCAAACA GCAGCATCAA 121 GATCAGCAAG TCTTTCAATT AAAGAGCAAC GGTGAGTGTT GGATGGACTA CTTCCAACAA 181 CAAGGTGCAA TAAATCACCC AATAAATTGG CACAAGCATT TAGTTTTAGT GTGTCCTTTG 241 GGCACTTACC CTTTGATGAT GGGGTGGAGG GGGTAGAGGG GGTAGGGGTA GGGTGGGGTT 301 TGGGGTGTGG GGGTGGTGGA CATGGGACAT AAGTGGAACT AACCATAGTG AAGAAAAGAA 361 TGTTGAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA CTTAGCCATT TTTTCCAAAA 421 TTAAGAAATT AAAATTAG Predicted gene structure (within gDNA segment 8841 to 6894): Exon 1 8231 7808 ( 424 n); cDNA 1 431 ( 431 n); score: 0.923 MATCH C08HBa0060C12.1- SGN-E308764- 0.923 424 0.968 C PGS_C08HBa0060C12.1-_SGN-E308764- (8231 7808) Alignment (genomic DNA sequence = upper lines): AGTTCTTGGG TGCATATTTG CCACAATTGT TAAGCAACAA GCTAAGTGAA AGTGGGATAT 8172 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| AGTTCTTGGG TGCATATTCG CCACAATTGT TAAGCAACAA GCTAAGTGAA AGTGGGATAT 60 TTAGATTAAT TCCCAACACA TTGGCTTTAA GGGCAGTGCA AAGGCAAACA GCAGCATCAA 8112 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTAGATTAAT TCCCAACACA TTGGCTTTAA GGGCAGTGTA AAGGCAAACA GCAGCATCAA 120 GATCAACAAG TCCTTCAATT AAAGAGCAAC ACTGAGTCTT GGCTGGACTA CTTCCAACAA 8052 ||||| |||| || ||||||| |||||||||| ||||| || || ||||||| |||||||||| GATCAGCAAG TCTTTCAATT AAAGAGCAAC GGTGAGTGTT GGATGGACTA CTTCCAACAA 180 CAAGGTGCAA TAAATCACCC AATAAATTGG CACAAGCATT TAGTTTTAGT GTGTCCTTTG 7992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTGCAA TAAATCACCC AATAAATTGG CACAAGCATT TAGTTTTAGT GTGTCCTTTG 240 GGCACTTACC CTTTGATGAT GGGGTGGAGG GGGT--A-GG GGTA-GGGTA --GTGGGGTT 7938 |||||||||| |||||||||| |||||||||| |||| | || |||| ||||| |||||||| GGCACTTACC CTTTGATGAT GGGGTGGAGG GGGTAGAGGG GGTAGGGGTA GGGTGGGGTT 300 TGGGGTGTGG GGGTGGTGGG CATGGGACAT TAGTGGAACT AACCATAGTG AAAAAAAGAA 7878 |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| || ||||||| TGGGGTGTGG GGGTGGTGGA CATGGGACAT AAGTGGAACT AACCATAGTG AAGAAAAGAA 360 TGTTCAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA CTTAACCATT TTTT-CAAAG 7819 |||| ||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||| |||| TGTTGAATGT GAGAACAAGG GCAATTGAGT ATGCACCAAA CTTAGCCATT TTTTCCAAAA 420 TTAAGAAGTT A 7808 ||||||| || | TTAAGAAATT A 431 hqPGS_C08HBa0060C12.1-_SGN-E308764- (8231 7808) ******************************************************************************** EST sequence 196 -strand 572 n (File: SGN-E309805-) 1 TAGAGTAAAA AATACACTTC TTTTAAAATA AGCAACTAGT AGTACTACAA GCATACAAAT 61 AACAAAATAC CAAACACAGA AAGAAACTAA TTTTGTCTTA AGCACATTGG AAGTTCTTGG 121 GTGCATATTT GCCACAATTG TTGAGCAACA AGCTAAGGGA AAGTGGAACA TTTAGATTAA 181 TTCCCAACAC ATTGGCTTTA AGGGCAGTGC AAAGGCAGAC AGCAGCATCA AGGTCAACAA 241 GTCCTTCAAT TAAAGAGCAA CATTGAGTCT TGGCTGGACT ACTTCCAACA ACAAGGTGCA 301 ATAAATCACC CAATAAATTG GCACAAGCAT TTAGTTTTAG TGTGTCCTTT GGGCACTTAC 361 CCTTTGATGA TGGGGTGGAG GGGGTAGGGG TAGGGTAGTG GGGTTTGGGG TGTGGGGGTG 421 GTGGGCATGG GGCATTAGTG GAACTAACCA TAGTGAAAAA AAGAATGTTC AATGTGAGAA 481 CAAGGGCAAT TGAGGTTGCA CCAAACTTAG ACATTTTTTC CAAACTTAAG AAATTAAAAT 541 TAGCACTCTC AACAATTGAA TGTGGCTAAT TA Predicted gene structure (within gDNA segment 9888 to 7178): Exon 1 8254 7812 ( 443 n); cDNA 89 532 ( 444 n); score: 0.951 MATCH C08HBa0060C12.1- SGN-E309805- 0.951 443 0.774 C PGS_C08HBa0060C12.1-_SGN-E309805- (8254 7812) Alignment (genomic DNA sequence = upper lines): AAATTTGGCT TATTTGCATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA 8195 || |||| || || |||| |||||||||| |||||||||| |||||||||| |||| ||||| AATTTTGTCT TAAGCACATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTGAGCAA 148 CAAGCTAAGT GAAAGTGGGA TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 8135 ||||||||| |||||||| | ||||||||| |||||||||| |||||||||| |||||||||| CAAGCTAAGG GAAAGTGGAA CATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 208 GCAAAGGCAA ACAGCAGCAT CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT 8075 ||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||| ||||| GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC AAGTCCTTCA ATTAAAGAGC AACATTGAGT 268 CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 8015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 328 ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 7955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 388 GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGACATTAG TGGAACTAAC 7895 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGGCATTAG TGGAACTAAC 448 CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGTATG CACCAAACTT 7835 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGGTTG CACCAAACTT 508 AACCATTTTT T-CAAAGTTA AGAA 7812 | ||||||| | |||| ||| |||| AGACATTTTT TCCAAACTTA AGAA 532 hqPGS_C08HBa0060C12.1-_SGN-E309805- (8254 7812) ******************************************************************************** EST sequence 209 -strand 571 n (File: SGN-E308724-) 1 GTAAAAAATC CACTTCTTTT AAAATAAGCA ATTAGTAGTA CTACAAGCAT GCAAATAACA 61 AAATACCAAA CACAGAAAGA AACTAATTTT GTCTTAAGCA CATTGGAAGT TCTTGGGTGC 121 ATATTCGCCA CAATTGTTGA GCAACAAGCT AAGGGAAAGT GGAACATTTA GATTAATTCC 181 CAACACATTG GCTTTAAGGG CAGTGCAAAG GCAGACAGCA GCATCAAGGT CAACAAGTCT 241 TTCAATTAAA GAGCAACATT GAGTCTTGGC TGGACTACTT CCAACAACAA GGTGCAATAA 301 ATCACCCAAT AAATTGGCAC AAGCATTTAG TTTTAGTGTG TCCTTTGGGC ACTTACCCTT 361 TGATGATGGG GTGGAGGGGG TAGGGGTAGG GTAGTGGGGT TTGGGGTGTG GGGGTGGTGG 421 GCATGGGGCA TTAGTGGAAC TAACCATAGT GAAAAAAAGA ATGTTCAATG TGAGAACAAG 481 GGCAATTGAG GTTGCACCAA ACTTAGACAT TTTTTCCAAA CTTAAGAAAT TAAAATTAGC 541 ACTCTCAACA ATTGAATGTG GCTAATTAGT T Predicted gene structure (within gDNA segment 10433 to 7166): Exon 1 8254 7812 ( 443 n); cDNA 85 528 ( 444 n); score: 0.947 MATCH C08HBa0060C12.1- SGN-E308724- 0.947 443 0.776 C PGS_C08HBa0060C12.1-_SGN-E308724- (8254 7812) Alignment (genomic DNA sequence = upper lines): AAATTTGGCT TATTTGCATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA 8195 || |||| || || |||| |||||||||| |||||||||| | |||||||| |||| ||||| AATTTTGTCT TAAGCACATT GGAAGTTCTT GGGTGCATAT TCGCCACAAT TGTTGAGCAA 144 CAAGCTAAGT GAAAGTGGGA TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 8135 ||||||||| |||||||| | ||||||||| |||||||||| |||||||||| |||||||||| CAAGCTAAGG GAAAGTGGAA CATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 204 GCAAAGGCAA ACAGCAGCAT CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT 8075 ||||||||| |||||||||| |||| ||||| ||||| |||| |||||||||| |||| ||||| GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC AAGTCTTTCA ATTAAAGAGC AACATTGAGT 264 CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 8015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 324 ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 7955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 384 GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGACATTAG TGGAACTAAC 7895 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGGCATTAG TGGAACTAAC 444 CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGTATG CACCAAACTT 7835 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGGTTG CACCAAACTT 504 AACCATTTTT T-CAAAGTTA AGAA 7812 | ||||||| | |||| ||| |||| AGACATTTTT TCCAAACTTA AGAA 528 hqPGS_C08HBa0060C12.1-_SGN-E308724- (8254 7812) ******************************************************************************** EST sequence 217 -strand 577 n (File: SGN-E311279-) 1 TTTTAAAAAA TACACTTCTT TTAAAATAAG CAACTAGTAG TACTACAAGC ATACAAATAA 61 CAAAATACCA AACACAGAAA GAAACTAATT TTGTCTTAAG CACATTGGAA GTTCTTGGGT 121 GCATATTTGC CACAATTGTT GAGCAACAAG CTAAGGGAAA GTGGAACATT TAGATTAATT 181 CCCAACACAT TGGCTTTAAG GGCAGTGCAA AGGCAGACAG CAGCATCAAG GTCAACAAGT 241 CCTTCAATTA AAGAGCAACA TTGAGTCTTG GATGGACTAC TTCCAACAAC AAGGTGCAAT 301 AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTG TGTCCTTTGG GCACTTACCC 361 TTTGATGATG GGGTGGAGGG GGTAGGGGTA GGGTAGTGGG GTTTGGGGTG TGGGGGTGGT 421 GGGCATGGGG CATTAGTGGA ACTAACCATA GTGAAAAAAA GAATGTTCAA TGTGAGAACA 481 AGGGCAATTG AGGTTGCACC AAACTTAGAC ATTTTTTCCA AACTTAAGAA ATTAAAATTA 541 GCACTCTCAA CAATTGAATG TGGCTAATTA GTTGTTT Predicted gene structure (within gDNA segment 9868 to 7126): Exon 1 8254 7812 ( 443 n); cDNA 87 530 ( 444 n); score: 0.949 MATCH C08HBa0060C12.1- SGN-E311279- 0.949 443 0.768 C PGS_C08HBa0060C12.1-_SGN-E311279- (8254 7812) Alignment (genomic DNA sequence = upper lines): AAATTTGGCT TATTTGCATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA 8195 || |||| || || |||| |||||||||| |||||||||| |||||||||| |||| ||||| AATTTTGTCT TAAGCACATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTGAGCAA 146 CAAGCTAAGT GAAAGTGGGA TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 8135 ||||||||| |||||||| | ||||||||| |||||||||| |||||||||| |||||||||| CAAGCTAAGG GAAAGTGGAA CATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 206 GCAAAGGCAA ACAGCAGCAT CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT 8075 ||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||| ||||| GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC AAGTCCTTCA ATTAAAGAGC AACATTGAGT 266 CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 8015 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGATGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 326 ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 7955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 386 GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGACATTAG TGGAACTAAC 7895 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGGCATTAG TGGAACTAAC 446 CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGTATG CACCAAACTT 7835 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGGTTG CACCAAACTT 506 AACCATTTTT T-CAAAGTTA AGAA 7812 | ||||||| | |||| ||| |||| AGACATTTTT TCCAAACTTA AGAA 530 hqPGS_C08HBa0060C12.1-_SGN-E311279- (8254 7812) ******************************************************************************** EST sequence 245 -strand 584 n (File: SGN-E545495-) 1 TTTTTTTTTT AAAAAATACA CTTCTTTTAA AATAAGCAAC TAGTAGTACT ACAAGCATAC 61 AAATAACAAA ATACCAAACA CAGAAAGAAA CTAATTTTGT CTTAAGCACA TTGGAAGTTC 121 TTGGGTGCAT ATTTGCCACA ATTGTTGAGC AACAAGCTAA GGGAAAGTGG AACATTTAGA 181 TTAATTCCCA ACACATTGGC TTTAAGGGCA GTGCAAAGGC AGACAGCAGC ATCAAGGTCA 241 ACAAGTCCTT CAATTAAAGA GCAACATTGA GTCTTGGCTG GACTACTTCC AACAACAAGG 301 TGCAATAAAT CACCCAATAA ATTGGCACAA GCATTTAGTT TTAGTGTGTC CTTTGGGCAC 361 TTACCCTTTG ATGATGGGGT GGAGGGGGTA GGGGTAGGGT AGTGGGGTTT GGGGTGTGGG 421 GGTGGTGGGC ATGGGGCATT AGTGGAACTA ACCATAGTGA AAAAAAGAAT GTTCAATGTG 481 AGAACAAGGG CAATTGAGGT TGCACCAAAC TTAGACATTT TTTCCAAACT TAAGAAATTA 541 AAATTAGCAC TCTCAACAAT TGAATGTGGC TAATTAGTTG TTTG Predicted gene structure (within gDNA segment 10528 to 7116): Exon 1 8254 7812 ( 443 n); cDNA 93 536 ( 444 n); score: 0.951 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E545495- 0.951 443 0.759 C PGS_C08HBa0060C12.1-_SGN-E545495- (8254 7812) Alignment (genomic DNA sequence = upper lines): AAATTTGGCT TATTTGCATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA 8195 || |||| || || |||| |||||||||| |||||||||| |||||||||| |||| ||||| AATTTTGTCT TAAGCACATT GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTGAGCAA 152 CAAGCTAAGT GAAAGTGGGA TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 8135 ||||||||| |||||||| | ||||||||| |||||||||| |||||||||| |||||||||| CAAGCTAAGG GAAAGTGGAA CATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT 212 GCAAAGGCAA ACAGCAGCAT CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT 8075 ||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||| ||||| GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC AAGTCCTTCA ATTAAAGAGC AACATTGAGT 272 CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 8015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTGGA CTACTTCCAA CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC 332 ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 7955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAGTTTT AGTGTGTCCT TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG 392 GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGACATTAG TGGAACTAAC 7895 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG TGGTGGGCAT GGGGCATTAG TGGAACTAAC 452 CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGTATG CACCAAACTT 7835 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| CATAGTGAAA AAAAGAATGT TCAATGTGAG AACAAGGGCA ATTGAGGTTG CACCAAACTT 512 AACCATTTTT T-CAAAGTTA AGAA 7812 | ||||||| | |||| ||| |||| AGACATTTTT TCCAAACTTA AGAA 536 hqPGS_C08HBa0060C12.1-_SGN-E545495- (8254 7812) ******************************************************************************** EST sequence 219 -strand 456 n (File: SGN-E311245-) 1 GGGTGCATAT TTGCCACAAT TGTTGAGCAA CAAGCTAAGG GAAAGTGGAA CATTTAGATT 61 AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC 121 AAGTCCTTCA ATTAAAGAGC AACATTGAGT CTTGGCTGGA CTACTTCCAA CAACAAGGTG 181 CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT TTGGGCACTT 241 ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG 301 TGGTGGGCAT GGGGCATTAG TGGAACTAAC CATAGTGAAA AAAAGAATGT TCAATGTGAG 361 AACAAGGGCA ATTGAGGTTG CACCAAACTT AGACATTTTT TCCAAACTTA AGAAATTAAA 421 ATTAGCACTC TCAACAATTG AATGTGGCTA ATTAGT Predicted gene structure (within gDNA segment 9293 to 7176): Exon 1 8224 7812 ( 413 n); cDNA 1 414 ( 414 n); score: 0.962 MATCH C08HBa0060C12.1- SGN-E311245- 0.962 413 0.906 C PGS_C08HBa0060C12.1-_SGN-E311245- (8224 7812) Alignment (genomic DNA sequence = upper lines): GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA TATTTAGATT 8165 |||||||||| |||||||||| |||| ||||| ||||||||| |||||||| | ||||||||| GGGTGCATAT TTGCCACAAT TGTTGAGCAA CAAGCTAAGG GAAAGTGGAA CATTTAGATT 60 AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT CAAGATCAAC 8105 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAG ACAGCAGCAT CAAGGTCAAC 120 AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA CAACAAGGTG 8045 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AAGTCCTTCA ATTAAAGAGC AACATTGAGT CTTGGCTGGA CTACTTCCAA CAACAAGGTG 180 CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT TTGGGCACTT 7985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT TTGGGCACTT 240 ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG 7925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG GGTGTGGGGG 300 TGGTGGGCAT GGGACATTAG TGGAACTAAC CATAGTGAAA AAAAGAATGT TCAATGTGAG 7865 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGGCAT GGGGCATTAG TGGAACTAAC CATAGTGAAA AAAAGAATGT TCAATGTGAG 360 AACAAGGGCA ATTGAGTATG CACCAAACTT AACCATTTTT T-CAAAGTTA AGAA 7812 |||||||||| |||||| || |||||||||| | ||||||| | |||| ||| |||| AACAAGGGCA ATTGAGGTTG CACCAAACTT AGACATTTTT TCCAAACTTA AGAA 414 hqPGS_C08HBa0060C12.1-_SGN-E311245- (8224 7812) ******************************************************************************** EST sequence 225 -strand 449 n (File: SGN-E311016-) 1 CATATTTGCC ACAATTGTTG AGCAACAAGC TAAGGGAAAG TGGAACATTT AGATTAATTC 61 CCAACACATT GGCTTTAAGG GCAGTGCAAA GGCAGACAGC AGCATCAAGG TCAACAAGTC 121 CTTCAATTAA AGAGCAACAT TGAGTCTTGG CTGGACTACT TCCAACAACA AGGTGCAATA 181 AATCACCCAA TAAATTGGCA CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT 241 TTGATGATGG GGTGGAGGGG GTAGGGGTAG GGTAGTGGGG TTTGGGGTGT GGGGGTGGTG 301 GGCATGGGGC ATTAGTGGAA CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA 361 GGGCAATTGA GGTTGCACCA AACTTAGACA TTTTTTCCAA ACTTAAGAAA TTAAAATTAG 421 CACTCTCAAC AATTGAATGT GGCTAATTA Predicted gene structure (within gDNA segment 9243 to 7178): Exon 1 8219 7812 ( 408 n); cDNA 1 409 ( 409 n); score: 0.962 MATCH C08HBa0060C12.1- SGN-E311016- 0.962 408 0.909 C PGS_C08HBa0060C12.1-_SGN-E311016- (8219 7812) Alignment (genomic DNA sequence = upper lines): CATATTTGCC ACAATTGTTA AGCAACAAGC TAAGTGAAAG TGGGATATTT AGATTAATTC 8160 |||||||||| ||||||||| |||||||||| |||| ||||| ||| | |||| |||||||||| CATATTTGCC ACAATTGTTG AGCAACAAGC TAAGGGAAAG TGGAACATTT AGATTAATTC 60 CCAACACATT GGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAACAAGTC 8100 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| CCAACACATT GGCTTTAAGG GCAGTGCAAA GGCAGACAGC AGCATCAAGG TCAACAAGTC 120 CTTCAATTAA AGAGCAACAC TGAGTCTTGG CTGGACTACT TCCAACAACA AGGTGCAATA 8040 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAATTAA AGAGCAACAT TGAGTCTTGG CTGGACTACT TCCAACAACA AGGTGCAATA 180 AATCACCCAA TAAATTGGCA CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT 7980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACCCAA TAAATTGGCA CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT 240 TTGATGATGG GGTGGAGGGG GTAGGGGTAG GGTAGTGGGG TTTGGGGTGT GGGGGTGGTG 7920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGATGG GGTGGAGGGG GTAGGGGTAG GGTAGTGGGG TTTGGGGTGT GGGGGTGGTG 300 GGCATGGGAC ATTAGTGGAA CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA 7860 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGGGGC ATTAGTGGAA CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA 360 GGGCAATTGA GTATGCACCA AACTTAACCA TTTTTT-CAA AGTTAAGAA 7812 |||||||||| | ||||||| |||||| || |||||| ||| | ||||||| GGGCAATTGA GGTTGCACCA AACTTAGACA TTTTTTCCAA ACTTAAGAA 409 hqPGS_C08HBa0060C12.1-_SGN-E311016- (8219 7812) ******************************************************************************** EST sequence 253 -strand 394 n (File: SGN-E311753-) 1 TAATTCCCAA CACATTGGCT TTAAGGGCAG TGCAAAGGCA GACAGCAGCA TCAAGGTCAA 61 CAAGTCCTTC AATTAAAGAG CAACATTGAG TCTTGGCTGG ACTACTTCCA ACAACAAGGT 121 GCAATAAATC ACCCAATAAA TTGGCACAAG CATTTAGTTT TAGTGTGTCC TTTGGGCACT 181 TACCCTTTGA TGATGGGGTG GAGGGGGTAG GGGTAGGGTA GTGGGGTTTG GGGTGTGGGG 241 GTGGTGGGCA TGGGGCATTA GTGGAACTAA CCATAGTGAA AAAAAGAATG TTCAATGTGA 301 GAACAAGGGC AATTGAGGTT GCACCAAACT TAGACATTTT TTCCAAACTT AAGAAATTAA 361 AATTAGCACT CTCAACAATT GAATGTGGCT AATT Predicted gene structure (within gDNA segment 8775 to 7179): Exon 1 8165 7812 ( 354 n); cDNA 1 355 ( 355 n); score: 0.968 MATCH C08HBa0060C12.1- SGN-E311753- 0.968 354 0.898 C PGS_C08HBa0060C12.1-_SGN-E311753- (8165 7812) Alignment (genomic DNA sequence = upper lines): TAATTCCCAA CACATTGGCT TTAAGGGCAG TGCAAAGGCA AACAGCAGCA TCAAGATCAA 8106 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| TAATTCCCAA CACATTGGCT TTAAGGGCAG TGCAAAGGCA GACAGCAGCA TCAAGGTCAA 60 CAAGTCCTTC AATTAAAGAG CAACACTGAG TCTTGGCTGG ACTACTTCCA ACAACAAGGT 8046 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CAAGTCCTTC AATTAAAGAG CAACATTGAG TCTTGGCTGG ACTACTTCCA ACAACAAGGT 120 GCAATAAATC ACCCAATAAA TTGGCACAAG CATTTAGTTT TAGTGTGTCC TTTGGGCACT 7986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATAAATC ACCCAATAAA TTGGCACAAG CATTTAGTTT TAGTGTGTCC TTTGGGCACT 180 TACCCTTTGA TGATGGGGTG GAGGGGGTAG GGGTAGGGTA GTGGGGTTTG GGGTGTGGGG 7926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCCTTTGA TGATGGGGTG GAGGGGGTAG GGGTAGGGTA GTGGGGTTTG GGGTGTGGGG 240 GTGGTGGGCA TGGGACATTA GTGGAACTAA CCATAGTGAA AAAAAGAATG TTCAATGTGA 7866 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGGGCA TGGGGCATTA GTGGAACTAA CCATAGTGAA AAAAAGAATG TTCAATGTGA 300 GAACAAGGGC AATTGAGTAT GCACCAAACT TAACCATTTT TT-CAAAGTT AAGAA 7812 |||||||||| ||||||| | |||||||||| || |||||| || |||| || ||||| GAACAAGGGC AATTGAGGTT GCACCAAACT TAGACATTTT TTCCAAACTT AAGAA 355 hqPGS_C08HBa0060C12.1-_SGN-E311753- (8165 7812) ******************************************************************************** EST sequence 214 -strand 379 n (File: SGN-E282258-) 1 TGCAAAGGCA AACAGCAGCA TCAAGATCAA CAAGTCCTTC AATTAAAGAG CAACATTGAG 61 TCTTGGCTGG ACTACTTCCA ACAACAAGGT GCAATAAATC ACCCAATAAA TTGGCACAAG 121 CATTTAGTTT TAGTGTGTCC TTTGGGCACT TACCTTTTGA TGATGGGGTG GAGGGGGTAG 181 AGGGGGTAGG GGTAGGGTGG GGTTTGGGGT GTGGGGGTGG TGGACATGGG ACATAAGTGG 241 AACTAACCAT AGTGAAGAAA AGAATGTTGA ATGTGAGAAC AAGGGCAATT GAGTATGCAC 301 CAAACTTAGC CATTTTTTCC AAAATTAAGA AATTAAAATT AGTACTCTCA ACAATTGAAT 361 GTGGCTAATT AGTAGTGAA Predicted gene structure (within gDNA segment 8745 to 7161): Exon 1 8135 7812 ( 324 n); cDNA 1 331 ( 331 n); score: 0.921 MATCH C08HBa0060C12.1- SGN-E282258- 0.921 324 0.855 C PGS_C08HBa0060C12.1-_SGN-E282258- (8135 7812) Alignment (genomic DNA sequence = upper lines): TGCAAAGGCA AACAGCAGCA TCAAGATCAA CAAGTCCTTC AATTAAAGAG CAACACTGAG 8076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TGCAAAGGCA AACAGCAGCA TCAAGATCAA CAAGTCCTTC AATTAAAGAG CAACATTGAG 60 TCTTGGCTGG ACTACTTCCA ACAACAAGGT GCAATAAATC ACCCAATAAA TTGGCACAAG 8016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGGCTGG ACTACTTCCA ACAACAAGGT GCAATAAATC ACCCAATAAA TTGGCACAAG 120 CATTTAGTTT TAGTGTGTCC TTTGGGCACT TACCCTTTGA TGATGGGGTG GAGGGGGT-- 7958 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||| CATTTAGTTT TAGTGTGTCC TTTGGGCACT TACCTTTTGA TGATGGGGTG GAGGGGGTAG 180 A-GGGGTA-G GGTA--GTGG GGTTTGGGGT GTGGGGGTGG TGGGCATGGG ACATTAGTGG 7902 | |||||| | |||| |||| |||||||||| |||||||||| ||| |||||| |||| ||||| AGGGGGTAGG GGTAGGGTGG GGTTTGGGGT GTGGGGGTGG TGGACATGGG ACATAAGTGG 240 AACTAACCAT AGTGAAAAAA AGAATGTTCA ATGTGAGAAC AAGGGCAATT GAGTATGCAC 7842 |||||||||| |||||| ||| |||||||| | |||||||||| |||||||||| |||||||||| AACTAACCAT AGTGAAGAAA AGAATGTTGA ATGTGAGAAC AAGGGCAATT GAGTATGCAC 300 CAAACTTAAC CATTTTTT-C AAAGTTAAGA A 7812 |||||||| | |||||||| | ||| |||||| | CAAACTTAGC CATTTTTTCC AAAATTAAGA A 331 hqPGS_C08HBa0060C12.1-_SGN-E282258- (8135 7812) ******************************************************************************** EST sequence 60 -strand 366 n (File: SGN-E305238-) 1 CAGCATCAAG ATCAACAAGT CCTTCAATTA AAGAGCAACA CTGAGTCTTG GCTGGACTAC 61 TTCCAACAAC AAGGTGCAAT AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTA 121 TGTCCTTTGG GCACTTACCC TTTGATGATG GGGTGGAGGG GGTAGAGGGG GTAGGGGTAG 181 GGTGGGGTTT GGGGTGTGGG GGTGGTGGAC ATGGGACATA AGTGGAACTA ACCATAGTGA 241 AGAAAAGAAT GTTGAATGTG AGAACAAGGG CAATTGAGTA TGCACCAAAC TTAGCCATTT 301 TTTCCAAAAT TAAGAAATTA AAATTAGTAC TCTCAACAAT TGAATGTGGC TAATTAGTAG 361 TGAAAA Predicted gene structure (within gDNA segment 8730 to 7141): Exon 1 8120 7812 ( 309 n); cDNA 1 316 ( 316 n); score: 0.921 MATCH C08HBa0060C12.1- SGN-E305238- 0.921 309 0.844 C PGS_C08HBa0060C12.1-_SGN-E305238- (8120 7812) Alignment (genomic DNA sequence = upper lines): CAGCATCAAG ATCAACAAGT CCTTCAATTA AAGAGCAACA CTGAGTCTTG GCTGGACTAC 8061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCATCAAG ATCAACAAGT CCTTCAATTA AAGAGCAACA CTGAGTCTTG GCTGGACTAC 60 TTCCAACAAC AAGGTGCAAT AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTG 8001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCCAACAAC AAGGTGCAAT AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTA 120 TGTCCTTTGG GCACTTACCC TTTGATGATG GGGTGGAGGG GGT--A-GGG GTA-GGGTA- 7946 |||||||||| |||||||||| |||||||||| |||||||||| ||| | ||| ||| ||||| TGTCCTTTGG GCACTTACCC TTTGATGATG GGGTGGAGGG GGTAGAGGGG GTAGGGGTAG 180 -GTGGGGTTT GGGGTGTGGG GGTGGTGGGC ATGGGACATT AGTGGAACTA ACCATAGTGA 7887 ||||||||| |||||||||| |||||||| | ||||||||| |||||||||| |||||||||| GGTGGGGTTT GGGGTGTGGG GGTGGTGGAC ATGGGACATA AGTGGAACTA ACCATAGTGA 240 AAAAAAGAAT GTTCAATGTG AGAACAAGGG CAATTGAGTA TGCACCAAAC TTAACCATTT 7827 | |||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||||| AGAAAAGAAT GTTGAATGTG AGAACAAGGG CAATTGAGTA TGCACCAAAC TTAGCCATTT 300 TTT-CAAAGT TAAGAA 7812 ||| |||| | |||||| TTTCCAAAAT TAAGAA 316 hqPGS_C08HBa0060C12.1-_SGN-E305238- (8120 7812) ******************************************************************************** EST sequence 64 -strand 179 n (File: SGN-E278738-) 1 GGTTTGGGGT GTGGGGGTGG TGGACATGGG ACATAAGTGG AACTAACCAT AGTGAAGAAA 61 AGAATGTTGA ATGTGAGAAC AAGGGCAATT GAGTATGCAC CAAACTTAGC CATTTTTTCC 121 AAAATTAAGA AATTAAAATT AGTACTCTCA ACAATTGAAT GTGGCTAATT AGTAGTGAA Predicted gene structure (within gDNA segment 8866 to 7161): Exon 1 7941 7812 ( 130 n); cDNA 1 131 ( 131 n); score: 0.935 MATCH C08HBa0060C12.1- SGN-E278738- 0.935 130 0.726 C PGS_C08HBa0060C12.1-_SGN-E278738- (7941 7812) Alignment (genomic DNA sequence = upper lines): GGTTTGGGGT GTGGGGGTGG TGGGCATGGG ACATTAGTGG AACTAACCAT AGTGAAAAAA 7882 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||||||| |||||| ||| GGTTTGGGGT GTGGGGGTGG TGGACATGGG ACATAAGTGG AACTAACCAT AGTGAAGAAA 60 AGAATGTTCA ATGTGAGAAC AAGGGCAATT GAGTATGCAC CAAACTTAAC CATTTTTT-C 7823 |||||||| | |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | AGAATGTTGA ATGTGAGAAC AAGGGCAATT GAGTATGCAC CAAACTTAGC CATTTTTTCC 120 AAAGTTAAGA A 7812 ||| |||||| | AAAATTAAGA A 131 hqPGS_C08HBa0060C12.1-_SGN-E278738- (7941 7812) ******************************************************************************** EST sequence 343 +strand 609 n (File: SGN-E539618+) 1 TTTTTTTTTT TTTTTTTTTT AACTTTAAAA GATAGACATT TATTTCATGA AAAGAAGGCA 61 ATAACTATAG CCTCCCTTGT AAACAAACTA GAATACAATA AGGAAGTATA CTTCCTTTTG 121 AAAATAAGCC CACAAAACAT CAAATAATAC ACTGAAAGAA ATTGAACTAT ATGAATTGAA 181 AATTTGGCTT ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC 241 AAGCTAAGTG AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG 301 CAAAGGCAAA CAGCAGCATC AAGATCAACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC 361 TTGGCTGGAC TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA 421 TTTAGTTTTA GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGGG 481 GTAGGGTAGT GGGGTTTGGG GTGTGGGGGT GGTGGGNATG GGACNTTAGT GGAACTAAGN 541 ATAGTGGAAA AAAGAATGTT CAATGTGAGA ACAAGGGGAA TTGAGTATGC ACCAAACTTA 601 ACCATTTTT Predicted gene structure (within gDNA segment 9213 to 7215): Exon 1 8410 7825 ( 586 n); cDNA 24 609 ( 586 n); score: 0.990 PPA cDNA 20 1 MATCH C08HBa0060C12.1- SGN-E539618+ 0.990 586 0.962 C PGS_C08HBa0060C12.1-_SGN-E539618+ (8410 7825) Alignment (genomic DNA sequence = upper lines): TTTAAAAGAT AGACATTTAT TTCATGAAAA GAAGGCAATA ACTATAGCCT CCCTTGTAAA 8351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAAAGAT AGACATTTAT TTCATGAAAA GAAGGCAATA ACTATAGCCT CCCTTGTAAA 83 CAAACTAGAA TACAATAAGG AAGTATACTT CCTTTTGAAA ATAAGCCCAC AAAACATCAA 8291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTAGAA TACAATAAGG AAGTATACTT CCTTTTGAAA ATAAGCCCAC AAAACATCAA 143 ATAATACACT GAAAGAAATT GAACTATATG AATTGAAAAT TTGGCTTATT TGCATTGGAA 8231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATACACT GAAAGAAATT GAACTATATG AATTGAAAAT TTGGCTTATT TGCATTGGAA 203 GTTCTTGGGT GCATATTTGC CACAATTGTT AAGCAACAAG CTAAGTGAAA GTGGGATATT 8171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTTGGGT GCATATTTGC CACAATTGTT AAGCAACAAG CTAAGTGAAA GTGGGATATT 263 TAGATTAATT CCCAACACAT TGGCTTTAAG GGCAGTGCAA AGGCAAACAG CAGCATCAAG 8111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATTAATT CCCAACACAT TGGCTTTAAG GGCAGTGCAA AGGCAAACAG CAGCATCAAG 323 ATCAACAAGT CCTTCAATTA AAGAGCAACA CTGAGTCTTG GCTGGACTAC TTCCAACAAC 8051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACAAGT CCTTCAATTA AAGAGCAACA CTGAGTCTTG GCTGGACTAC TTCCAACAAC 383 AAGGTGCAAT AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTG TGTCCTTTGG 7991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTGCAAT AAATCACCCA ATAAATTGGC ACAAGCATTT AGTTTTAGTG TGTCCTTTGG 443 GCACTTACCC TTTGATGATG GGGTGGAGGG GGTAGGGGTA GGGTAGTGGG GTTTGGGGTG 7931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTTACCC TTTGATGATG GGGTGGAGGG GGTAGGGGTA GGGTAGTGGG GTTTGGGGTG 503 TGGGGGTGGT GGGCATGGGA CATTAGTGGA ACTAACCATA GTGAAAAAAA GAATGTTCAA 7871 |||||||||| ||| |||||| | |||||||| ||||| ||| ||| |||||| |||||||||| TGGGGGTGGT GGGNATGGGA CNTTAGTGGA ACTAAGNATA GTGGAAAAAA GAATGTTCAA 563 TGTGAGAACA AGGGCAATTG AGTATGCACC AAACTTAACC ATTTTT 7825 |||||||||| |||| ||||| |||||||||| |||||||||| |||||| TGTGAGAACA AGGGGAATTG AGTATGCACC AAACTTAACC ATTTTT 609 hqPGS_C08HBa0060C12.1-_SGN-E539618+ (8410 7825) ******************************************************************************** EST sequence 146 -strand 480 n (File: SGN-E288324-) 1 AGTATACTTC CTTTTGAAAA TAAGCCCACA AAACATCAAA TAATACACTG AAAGTAATTG 61 AACTATATGA ATTGAAAATT TGGCTTATTT GCATTGGAAG TTGTTGGGTG CACATTGGCC 121 ACAATTGTTA AGCAACAAGC TAAGTGAAAG TGGGATATTT AGATTAATTC CCAACACATT 181 GGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAACAAGTC CTTCAATTAA 241 AGAGCAACAN TGAGTNTTGG CTGGACTACT TCCAACAACA AGGTGCAATA AATCACCCAA 301 TAAATTGGCA CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT TTGATGATGG 361 GGTGGAGGGG GTAGGGGTAG GGTAGTGGGG TTTGGGGTGT GGGGGTGGTG GGCATGGGAC 421 ATTAGTGGAA CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA GGGCAATTGA Predicted gene structure (within gDNA segment 8939 to 7250): Exon 1 8329 7850 ( 480 n); cDNA 1 480 ( 480 n); score: 0.988 MATCH C08HBa0060C12.1- SGN-E288324- 0.988 480 1.000 C PGS_C08HBa0060C12.1-_SGN-E288324- (8329 7850) Alignment (genomic DNA sequence = upper lines): AGTATACTTC CTTTTGAAAA TAAGCCCACA AAACATCAAA TAATACACTG AAAGAAATTG 8270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AGTATACTTC CTTTTGAAAA TAAGCCCACA AAACATCAAA TAATACACTG AAAGTAATTG 60 AACTATATGA ATTGAAAATT TGGCTTATTT GCATTGGAAG TTCTTGGGTG CATATTTGCC 8210 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| || ||| ||| AACTATATGA ATTGAAAATT TGGCTTATTT GCATTGGAAG TTGTTGGGTG CACATTGGCC 120 ACAATTGTTA AGCAACAAGC TAAGTGAAAG TGGGATATTT AGATTAATTC CCAACACATT 8150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTGTTA AGCAACAAGC TAAGTGAAAG TGGGATATTT AGATTAATTC CCAACACATT 180 GGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAACAAGTC CTTCAATTAA 8090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAACAAGTC CTTCAATTAA 240 AGAGCAACAC TGAGTCTTGG CTGGACTACT TCCAACAACA AGGTGCAATA AATCACCCAA 8030 ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCAACAN TGAGTNTTGG CTGGACTACT TCCAACAACA AGGTGCAATA AATCACCCAA 300 TAAATTGGCA CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT TTGATGATGG 7970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATTGGCA CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT TTGATGATGG 360 GGTGGAGGGG GTAGGGGTAG GGTAGTGGGG TTTGGGGTGT GGGGGTGGTG GGCATGGGAC 7910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGAGGGG GTAGGGGTAG GGTAGTGGGG TTTGGGGTGT GGGGGTGGTG GGCATGGGAC 420 ATTAGTGGAA CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA GGGCAATTGA 7850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTGGAA CTAACCATAG TGAAAAAAAG AATGTTCAAT GTGAGAACAA GGGCAATTGA 480 hqPGS_C08HBa0060C12.1-_SGN-E288324- (8329 7850) ******************************************************************************** EST sequence 231 -strand 549 n (File: SGN-E288084-) 1 TTTTTTTTTT TAACTTTAAA AGATGACATT TATTTCATGA AAAGAAGGCA ATAACTATAG 61 CCTCCCTTGT AAACAAGCTA GAATGCAATA AGGAAGTATA CTTCCTTTTG AAAATAAGCC 121 CACAAAACAT CAAATAATAC ATTGAAAGAC ATTGAACTAT ATGAATTGAA AATTTGGCTT 181 ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC AAGCTAAGTG 241 AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG CAAAGGCAAA 301 CAGCAGCATC AAGATCGACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC TTGGCTGGAC 361 TACTTCCAAC AGCAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA TTTAGTTTTA 421 GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGAG GGGGTAGGGG 481 TAGGGTGGGG TTTGGGGTGT GGGGGTGGTG GACATGGGAC ATAAGTGGAA CTAACCATAG 541 TGAAGAAAA Predicted gene structure (within gDNA segment 9249 to 6717): Exon 1 8423 7881 ( 543 n); cDNA 2 549 ( 548 n); score: 0.945 MATCH C08HBa0060C12.1- SGN-E288084- 0.945 543 0.989 C PGS_C08HBa0060C12.1-_SGN-E288084- (8423 7881) Alignment (genomic DNA sequence = upper lines): TTTTAACATA AACTTTAAAA GATAGACATT TATTTCATGA AAAGAAGGCA ATAACTATAG 8364 |||| | |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT AACTTTAAAA GAT-GACATT TATTTCATGA AAAGAAGGCA ATAACTATAG 60 CCTCCCTTGT AAACAAACTA GAATACAATA AGGAAGTATA CTTCCTTTTG AAAATAAGCC 8304 |||||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| |||||||||| CCTCCCTTGT AAACAAGCTA GAATGCAATA AGGAAGTATA CTTCCTTTTG AAAATAAGCC 120 CACAAAACAT CAAATAATAC ACTGAAAGAA ATTGAACTAT ATGAATTGAA AATTTGGCTT 8244 |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| CACAAAACAT CAAATAATAC ATTGAAAGAC ATTGAACTAT ATGAATTGAA AATTTGGCTT 180 ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC AAGCTAAGTG 8184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGCATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTAAGCAAC AAGCTAAGTG 240 AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG CAAAGGCAAA 8124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG CAAAGGCAAA 300 CAGCAGCATC AAGATCAACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC TTGGCTGGAC 8064 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCATC AAGATCGACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC TTGGCTGGAC 360 TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA TTTAGTTTTA 8004 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCCAAC AGCAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA TTTAGTTTTA 420 GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAG-- -GGGTA-GGG 7948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ||||| ||| GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGAG GGGGTAGGGG 480 TA--GTGGGG TTTGGGGTGT GGGGGTGGTG GGCATGGGAC ATTAGTGGAA CTAACCATAG 7890 || |||||| |||||||||| |||||||||| | |||||||| || ||||||| |||||||||| TAGGGTGGGG TTTGGGGTGT GGGGGTGGTG GACATGGGAC ATAAGTGGAA CTAACCATAG 540 TGAAAAAAA 7881 |||| |||| TGAAGAAAA 549 hqPGS_C08HBa0060C12.1-_SGN-E288084- (8423 7881) ******************************************************************************** EST sequence 15 -strand 487 n (File: SGN-E350884-) 1 CACATATAGT ACCTCCTTTG AAAATAACCA AATATATAAG CATTCAAAAC CCCAAACACA 61 CACACACACA CATTCAAACA AAAAGAAACA AAATNCNCTA TATGAAAGTG GATTTTTTTT 121 TTTTTTTTTG CAAAATGGAG AAATTTGTCT ATAGCATAAT AAATTAACAT TGGAAGTCCT 181 TAGGGACATA TTTGCCACAG TTGTTGAGTA ACAAGCTTAG TGAAAGTGGA ACATTTAGGT 241 TAATTCCCAA TAGATTAGCT TTAAGGGCAG TGCAAAGGCA AACAGCAGCA TCAAGATCAG 301 CAAGTCCATG AATTAAAGAG CAACATTTAG TCTTGGCTGG GCTACTTCCA ATAACAAGGT 361 GCACTAAGTC ATTTAGCAAA TTGGCACAAG CATTTAGCTT TAGTGTGTCC TTTGGGCACT 421 TTCCCTTTGA TGATGGGGTG GAGGGGGTGG AAGGGGTGGA GGGGGTAGGG GTAGGGTGGG 481 GTTTGGG Predicted gene structure (within gDNA segment 11928 to 6968): Exon 1 10454 10446 ( 9 n); cDNA 155 163 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7918 ( 325 n); cDNA 164 486 ( 323 n); score: 0.855 MATCH C08HBa0060C12.1- SGN-E350884- 0.855 334 0.686 C PGS_C08HBa0060C12.1-_SGN-E350884- (10454 10446,8242 7918) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 163 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 163 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 163 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 163 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 163 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 163 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 163 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 163 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 163 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 163 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 163 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 163 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 163 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 163 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 163 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 163 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 163 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 163 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 163 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 163 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 163 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 163 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 163 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 163 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 163 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 163 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 163 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 163 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 163 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 163 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 163 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 163 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 163 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 163 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 163 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 163 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 171 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 231 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 291 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 351 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 411 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 469 GGTGTGGGGG TGGTGGG 7918 ||| || || | | || GGTAGGGTGG GGTTTGG 486 hqPGS_C08HBa0060C12.1-_SGN-E350884- (8242 7918) ******************************************************************************** EST sequence 48 -strand 654 n (File: SGN-E352409-) 1 AAATATATTT CATTTATCAC TCATGATTAA AATGGAATCA TACACCAAAA GAAAACCAAC 61 ACTATTGCCT TCCATCTAAC CAATCACATA TAGTAACTCC TTTGAAAATA AACAAATATA 121 TAAGCATACA AAACACCAAA CACACACACA CACACACTCA AACAAAAAGA AACAAAATAC 181 ACTATATGAA AGTGGATTTT TTTTTTTTTT TTTGCAAAAT GGAGAAATTT GTCTATAGCA 241 TAATAAATTA ACATTGGAAG TCCTTAGGGA CATATTTGCC ACAGTTGTTG AGTAACAAGC 301 TTAGTGAAAG TGGAACATTT AGGTTAATTC CCAATAGATT AGCTTTAAGG GCAGTGCAAA 361 GGCAAACAGC AGCATCAAGA TCAGCAAGTC CATGAATTAA AGAGCAACAT TTAGTCTTGG 421 CTGGGCTACT TCCAATAACA AGGTGCACTA AGTCATTTAG CAAATTGGCA CAAGCATTTA 481 GCTTTAGTGT GTCCTTTGGG CACTTTCCCT TTGATGATGG GGTGGAGGGG GTGGAAGGGG 541 TGGAGGGGGT AGGGGTAGGG TGGGGTTTGG GGTGGTGTTT GTGGTGTGGG GGTGGTGGAC 601 ATGGGATATA AGTGGAACTA ACCATAGTGA AGAAAAGAAT GTTCAATGTG AGAA Predicted gene structure (within gDNA segment 12168 to 7263): Exon 1 10454 10446 ( 9 n); cDNA 239 247 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 248 563 ( 316 n); score: 0.862 MATCH C08HBa0060C12.1- SGN-E352409- 0.862 327 0.500 C PGS_C08HBa0060C12.1-_SGN-E352409- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 247 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 247 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 247 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 247 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 247 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 247 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 247 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 247 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 247 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 247 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 247 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 247 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 247 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 247 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 247 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 247 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 247 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 247 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 247 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 247 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 247 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 247 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 247 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 247 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 247 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 247 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 247 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 247 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 247 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 247 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 247 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 247 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 247 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 247 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 247 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 247 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 255 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 315 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 375 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 435 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 495 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 553 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 563 hqPGS_C08HBa0060C12.1-_SGN-E352409- (8242 7925) ******************************************************************************** EST sequence 74 -strand 765 n (File: SGN-E372492-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTAAAA CTCCCCAAAT TATATTTCAT TTATCATTCA 61 TGATTAAAAG GGATCATACA ACAAAAGAAA ACCAACCTTA TTGCTTTCCA TTTAACCAAT 121 CACATATAGT AACTCCTTGA AAATAAACAA ATATATAAGC ATACAAAACA CCAAACACAC 181 ACACACACAC ACTCAAACAA AAAGAAACAA AATACACTAT ATGAAAGTGG ATTTTTTTTT 241 TTTTTTTTGC AAAATGGAGA AATTTGTCTA TAGCATAATA AATTAACATT GGAAGTCCTT 301 AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA CATTTAGGTT 361 AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT CAAGATCAGC 421 AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA TAACAAGGTG 481 CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT TTGGGCACTT 541 TCCCTTTGAT GATGGGGTGG AGGGGGTGGA AGGGGTGGAG GGGGTAGGGG TAGGGTGGGG 601 TTTGGGGTGG TGTTTGTGGT GTGGGGGTGG TGGACATGGG ATATAAGTGG AACTAACCAT 661 AGTGAAGAAA AGAATGTTCA ATGTGAGAAC TAGGGCAATT GAGGTTGCAC CAAACTTGGC 721 CATTTTTTGA AAGTTAAAGA AATTTAACTC TCTCAACAAT TGTGA Predicted gene structure (within gDNA segment 13118 to 6512): Exon 1 10454 10446 ( 9 n); cDNA 274 282 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 283 598 ( 316 n); score: 0.862 PPA cDNA 26 1 MATCH C08HBa0060C12.1- SGN-E372492- 0.862 327 0.427 C PGS_C08HBa0060C12.1-_SGN-E372492- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 282 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 282 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 282 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 282 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 282 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 282 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 282 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 282 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 282 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 282 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 282 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 282 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 282 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 282 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 282 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 282 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 282 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 282 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 282 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 282 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 282 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 282 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 282 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 282 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 282 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 282 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 282 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 282 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 282 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 282 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 282 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 282 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 282 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 282 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 282 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 282 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 290 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 350 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 410 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 470 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 530 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 588 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 598 hqPGS_C08HBa0060C12.1-_SGN-E372492- (8242 7925) ******************************************************************************** EST sequence 195 -strand 726 n (File: SGN-E344404-) 1 TTCATTTATC ACTCATGATT AAAATGGAAT CATACAACAA AAGAAAACCA ACACTATTGC 61 CTTCCATCTA ACCAATCACA TATAGTAACT CCTTTGAAAA TAAACAAATA TATAAGCATA 121 CAAAACACCA AACACACACA CACACACACT CAAACAAAAA GAAACAAAAT ACACTATATG 181 AAAGTGGATT TTTTTTTTTT TTTTTGCAAA ATGGAGAAAT TTGTCTATAG CATAATAAAT 241 TAACATTGGA AGTCCTTAGG GACATATTTG CCACAGTTGT TGAGTAACAA GCTTAGTGAA 301 AGTGGAACAT TTAGGTTAAT TCCCAATAGA TTAGCTTTAA GGGCAGTGCA AAGGCAAACA 361 GCAGCATCAA GATCAGCAAG TCCATGAATT AAAGAGCAAC ATTTAGTCTT GGCTGGGCTA 421 CTTCCAATAA CAAGGTGCAC TAAGTCATTT AGCAAATTGG CACAAGCATT TAGCTTTAGT 481 GTGTCCTTTG GGCACTTTCC CTTTGATGAT GGGGTGGAGG GGGTGGAAGG GGTGGAGGGG 541 GTAGGGGTAG GGTGGGGTTT GGGGTGGTGT TTGTGGTGTG GGGGTGGTGG ACATGGGATA 601 TAAGTGGAAC TAACCATAGT GAAGAAAAGA ATGTTCAATG TGAGAACTAG GGCAATTGAG 661 GTTGCACCAA ACTTGGCCAT TTTTTGAAAG TTAAAGAAAT TTAACTCTCT CAACAATTGT 721 GAAAAA Predicted gene structure (within gDNA segment 12688 to 6472): Exon 1 10454 10446 ( 9 n); cDNA 231 239 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 240 555 ( 316 n); score: 0.862 MATCH C08HBa0060C12.1- SGN-E344404- 0.862 327 0.450 C PGS_C08HBa0060C12.1-_SGN-E344404- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 239 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 239 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 239 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 239 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 239 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 239 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 239 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 239 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 239 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 239 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 239 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 239 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 239 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 239 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 239 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 239 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 239 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 239 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 239 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 239 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 239 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 239 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 239 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 239 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 239 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 239 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 239 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 239 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 239 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 239 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 239 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 239 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 239 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 239 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 239 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 239 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 247 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 307 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 367 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 427 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 487 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 545 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 555 hqPGS_C08HBa0060C12.1-_SGN-E344404- (8242 7925) ******************************************************************************** EST sequence 271 -strand 703 n (File: SGN-E349133-) 1 TAAAATGGAA TCATACAACA AAAGAAAACC AACACTATTG CCTTCCATCT AACCAATCAC 61 ATATAGTAAC TCCTTTGAAA ATAAACAAAT ATATAAGCAT ACAAAACACC AAACACACAC 121 ACACACACAC TCAAACAAAA AGAAACAAAA TACACTATAT GAAAGTGGAT TTTTTTTTTT 181 TTTTTTGCAA AATGGAGAAA TTTGTCTATA GCATAATAAA TTAACATTGG AAGTCCTTAG 241 GGACATATTT GCCACAGTTG TTGAGTAACA AGCTTAGTGA AAGTGGAACA TTTAGGTTAA 301 TTCCCAATAG ATTAGCTTTA AGGGCAGTGC AAAGGCAAAC AGCAGCATCA AGATCAGCAA 361 GTCCATGAAT TAAAGAGCAA CATTTAGTCT TGGCTGGGCT ACTTCCAATA ACAAGGTGCA 421 CTAAGTCATT TAGCAAATTG GCACAAGCAT TTAGCTTTAG TGTGTCCTTT GGGCACTTTC 481 CCTTTGATGA TGGGGTGGAG GGGGTGGAAG GGGTGGAGGG GGTAGGGGTA GGGTGGGGTT 541 TGGGGTGGTG TTTGTGGTGT GGGGGTGGTG GACATGGGAT ATAAGTGGAA CTAACCATAG 601 TGAAGAAAAG AATGTTCAAT GTGAGAACTA GGGCAATTGA GGTTGCACCA AACTTGGCCA 661 TTTTTTGAAA GTTAAAGAAA TTTAACTCTC TCAACAATTG TGA Predicted gene structure (within gDNA segment 11898 to 6512): Exon 1 10454 10446 ( 9 n); cDNA 212 220 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 221 536 ( 316 n); score: 0.862 MATCH C08HBa0060C12.1- SGN-E349133- 0.862 327 0.465 C PGS_C08HBa0060C12.1-_SGN-E349133- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 220 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 220 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 220 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 220 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 220 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 220 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 220 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 220 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 220 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 220 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 220 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 220 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 220 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 220 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 220 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 220 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 220 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 220 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 220 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 220 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 220 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 220 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 220 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 220 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 220 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 220 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 220 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 220 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 220 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 220 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 220 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 220 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 220 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 220 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 220 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 220 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 228 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 288 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 348 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 408 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 468 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 526 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 536 hqPGS_C08HBa0060C12.1-_SGN-E349133- (8242 7925) ******************************************************************************** EST sequence 272 -strand 601 n (File: SGN-E349140-) 1 AAAACACCAA ACACACACAC ACACACATTC AAACAAAAAG AAACAAAATA CACTATATGA 61 AAGTGGATTT TTTTTTTTTT TTTTGCAAAA TGGAGAAATT TGTCTATAGC ATAATAAATT 121 AACATTGGAA GTCCTTAGGG ACATATTTGC CACAGTTGTT GAGTAACAAG CTTAGTGAAA 181 GTGGAACATT TAGGTTAATT CCCAATAGAT TAGCTTTAAG GGCAGTGCAA AGGCAAACAG 241 CAGCATCAAG ATCAGCAAGT CCATGAATTA AAGAGCAACA TTTAGTCTTG GCTGGGCTAC 301 TTCCAATAAC AAGGTGCACT AAGTCATTTA GCAAATTGGC ACAAGCATTT AGCTTTAGTG 361 TGTCCTTTGG GCACTTTCCC TTTGATGATG GGGTGGAGGG GGTGGAAGGG GTGGAGGGGG 421 TAGGGGTAGG GTGGGGTTTG GGGTGGTGTT TGTGGTGTGG GGGTGGTGGA CATGGGATAT 481 AAGTGGAACT AACCATAGTG AAGAAAAGAA TGTTCAATGT GAGAACTAGG GCAATTGAGG 541 TTGCACCAAA CTTGGCCATT TTTTGAAAGT TAAAGAAATT TAACTCTCTC AACAATTGTG 601 A Predicted gene structure (within gDNA segment 11478 to 6512): Exon 1 10454 10446 ( 9 n); cDNA 110 118 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 119 434 ( 316 n); score: 0.862 MATCH C08HBa0060C12.1- SGN-E349140- 0.862 327 0.544 C PGS_C08HBa0060C12.1-_SGN-E349140- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 118 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 118 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 118 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 118 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 118 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 118 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 118 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 118 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 118 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 118 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 118 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 118 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 118 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 118 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 118 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 118 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 118 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 118 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 118 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 118 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 118 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 118 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 118 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 118 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 118 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 118 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 118 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 118 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 118 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 118 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 118 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 118 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 118 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 118 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 118 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 118 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 126 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 186 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 246 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 306 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 366 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 424 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 434 hqPGS_C08HBa0060C12.1-_SGN-E349140- (8242 7925) ******************************************************************************** EST sequence 167 -strand 676 n (File: SGN-E309387-) 1 TTTTTTTTTT TTTATAAAAC TCCACAAATA AATTTCATTT ATCACTCATG ATTAAAATGG 61 AATCATACAA CAAAAGAAAA CCAACACTAT TGCCTTCCAT CTAACCAATC ACATATAGTA 121 ACTCCTTTGA AAATAAACAA ATATATAAGC ATACAAAACA CCAAACACAC ACACACACAC 181 ACTCAAACAA AAAGAAACAA AATACNCTAT ATGAAAGTGG ATTTTTTTTT TTTTTTTTGC 241 AAAATGGAGA AATTTGTCTA TAGCATAATA AATTAACATT GGAAGTCCTT AGGGACATAT 301 TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA CATTTAGGTT AATTCCCAAT 361 AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT CAAGATCAGC AAGTCCATGA 421 ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA TAACAAGGTG CACTAAGTCA 481 TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT TTGGGCACTT TCCCTTTGAT 541 GATGGGGTGG AGGGGGTGGA AGGGGTGGAG GGGGTAGGGG TAGGGTGGGG TTTGGGGTGG 601 TGTTTGTGGT GTGGGGGTGG TGGACATGGG ATATAAGTGG AACTAACCAT AGTGAAGAAA 661 AGAATGTTCA ATGTGA Predicted gene structure (within gDNA segment 12418 to 7266): Exon 1 10454 10446 ( 9 n); cDNA 264 272 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 273 588 ( 316 n); score: 0.862 PPA cDNA 15 1 MATCH C08HBa0060C12.1- SGN-E309387- 0.862 327 0.484 C PGS_C08HBa0060C12.1-_SGN-E309387- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 272 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 272 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 272 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 272 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 272 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 272 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 272 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 272 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 272 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 272 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 272 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 272 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 272 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 272 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 272 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 272 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 272 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 272 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 272 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 272 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 272 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 272 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 272 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 272 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 272 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 272 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 272 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 272 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 272 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 272 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 272 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 272 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 272 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 272 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 272 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 272 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 280 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 340 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 400 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 460 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 520 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 578 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 588 hqPGS_C08HBa0060C12.1-_SGN-E309387- (8242 7925) ******************************************************************************** EST sequence 175 -strand 676 n (File: SGN-E354435-) 1 TTTTTTTTTT TTTTTAAACT CCANCAAATA TATTTCATTT ATCACTCATG ATTAAAATGG 61 AATCATACAA CAAAAGAAAA CCAACACTAT TGCCTTCCAT CTAACCAATC ACATATAGTA 121 ACTCCTTTGA AAATAAACAA ATATATAAGC ATACAAAACA CCAAACACAC ACACACACAC 181 ACTCAAACAA AAAGAAACAA AATACACTAT ATGAAAGTGG ATTTTTTTTT TTTTTTTTGC 241 AAAATGGAGA AATTTGTCTA TAGCATAATA AATTAACATT GGAAGTCCTT AGGGACATAT 301 TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA CATTTAGGTT AATTCCCAAT 361 AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT CAAGATCAGC AAGTCCATGA 421 ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA TAACAAGGTG CACTAAGTCA 481 TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT TTGGGCACTT TCCCTTTGAT 541 GATGGGGTGG AGGGGGTGGA AGGGGTGGAG GGGGTAGGGG TAGGGTGGGG TTTGGGGTGG 601 TGTTTGTGGT GTGGGGGTGG TGGACATGGG ATATAAGTGG AACTAACCAT AGTGAAGAAA 661 AGAATGTTCA ATGTGA Predicted gene structure (within gDNA segment 12418 to 7266): Exon 1 10454 10446 ( 9 n); cDNA 264 272 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 273 588 ( 316 n); score: 0.862 PPA cDNA 15 1 MATCH C08HBa0060C12.1- SGN-E354435- 0.862 327 0.484 C PGS_C08HBa0060C12.1-_SGN-E354435- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 272 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 272 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 272 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 272 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 272 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 272 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 272 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 272 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 272 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 272 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 272 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 272 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 272 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 272 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 272 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 272 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 272 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 272 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 272 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 272 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 272 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 272 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 272 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 272 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 272 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 272 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 272 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 272 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 272 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 272 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 272 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 272 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 272 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 272 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 272 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 272 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 280 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 340 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 400 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 460 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 520 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 578 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 588 hqPGS_C08HBa0060C12.1-_SGN-E354435- (8242 7925) ******************************************************************************** EST sequence 230 -strand 486 n (File: SGN-E356305-) 1 TTTTTTTTAG TAACTCCTTT GAAAATAANC AAATATATAA GCATACAAAA CACCAAACAC 61 ACACACACAC ACATTCAAAC AAAAAGAAAC AAAATACACT ATATGAAAGT GGATTTTTTT 121 TTTTTTTTTT GCAAAATGGA GAAATTTGTC TATAGCATAA TAAATTAACA TTGGAAGTCC 181 TTAGGGACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 241 TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 301 GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 361 TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 421 TTTCCCTTTG ATGATGGGGT GGAGGGGGTG GAAGGGGTGG AGGGGGTAGG GGTAGGGTGG 481 GGTTTG Predicted gene structure (within gDNA segment 11938 to 6988): Exon 1 10454 10446 ( 9 n); cDNA 156 164 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7925 ( 318 n); cDNA 165 480 ( 316 n); score: 0.862 MATCH C08HBa0060C12.1- SGN-E356305- 0.862 327 0.673 C PGS_C08HBa0060C12.1-_SGN-E356305- (10454 10446,8242 7925) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 164 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 164 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 164 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 164 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 164 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 164 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 164 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 164 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 164 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 164 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 164 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 164 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 164 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 164 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 164 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 164 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 164 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 164 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 164 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 164 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 164 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 164 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 164 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 164 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 164 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 164 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 164 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 164 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 164 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 164 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 164 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 164 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 164 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 164 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 164 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 164 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 172 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 232 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 292 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 352 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 412 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 470 GGTGTGGGGG 7925 ||| || || GGTAGGGTGG 480 hqPGS_C08HBa0060C12.1-_SGN-E356305- (8242 7925) ******************************************************************************** EST sequence 232 -strand 480 n (File: SGN-E356551-) 1 ACATTGGAAG TCCTTAGGGA CATACTTGCC ACATTTGTCG AGTAACAAGA ATAGTGAAAG 61 TGGAACATCT AGGTCAATTC CCAATAGATT AGCTTTAAGG GCAGTGCATA GGCAATCAGC 121 AGCATCAAGA TCAGCAAGTC CATGAATCAA AGAGCATCAT TTAGTCTTGG ATGGGATACT 181 TCCAATAACA AGCTGCACTA AGTCATTTAG CAAATTGGCA CAAGCATTTA GCTTTAGTGT 241 GTCCTTTGGG CCCTTTCCGT CTGATGATGT GGTGGAGGTG GTGTAAGGGG TGGAGGGGGT 301 AGGGGTAGGG TGGGGTTTGG GGTGGTGTTT GTGGTGTGGG GGTGGTGGAC ATGGGATATA 361 AGTGGAACTA ACCATAGTGA AGAAAAGAAT GTTCAATGTG AGAACTAGGG CAATTGAGGT 421 TGCACCAAAC TTGGCCATTT TTTGAAAGTT AAAGAAATTT AACTCTCTCA ACAATTGTGA Predicted gene structure (within gDNA segment 9668 to 6512): Exon 1 8238 7925 ( 314 n); cDNA 2 313 ( 312 n); score: 0.806 MATCH C08HBa0060C12.1- SGN-E356551- 0.806 314 0.654 C PGS_C08HBa0060C12.1-_SGN-E356551- (8238 7925) Alignment (genomic DNA sequence = upper lines): CATTGGAAGT TCTTGGGTGC ATATTTGCCA CAATTGTTAA GCAACAAGCT AAGTGAAAGT 8179 |||||||||| ||| || | ||| |||||| || |||| | | |||||| ||||||||| CATTGGAAGT CCTTAGGGAC ATACTTGCCA CATTTGTCGA GTAACAAGAA TAGTGAAAGT 61 GGGATATTTA GATTAATTCC CAACACATTG GCTTTAAGGG CAGTGCAAAG GCAAACAGCA 8119 || | || || | | |||||| ||| | ||| |||||||||| ||||||| || |||| ||||| GGAACATCTA GGTCAATTCC CAATAGATTA GCTTTAAGGG CAGTGCATAG GCAATCAGCA 121 GCATCAAGAT CAACAAGTCC TTCAATTAAA GAGCAACACT GAGTCTTGGC TGGACTACTT 8059 |||||||||| || ||||||| | ||| ||| ||||| || | |||||||| ||| ||||| GCATCAAGAT CAGCAAGTCC ATGAATCAAA GAGCATCATT TAGTCTTGGA TGGGATACTT 181 CCAACAACAA GGTGCAATAA ATCACCCAAT AAATTGGCAC AAGCATTTAG TTTTAGTGTG 7999 |||| ||||| | |||| ||| ||| | |||||||||| |||||||||| ||||||||| CCAATAACAA GCTGCACTAA GTCATTTAGC AAATTGGCAC AAGCATTTAG CTTTAGTGTG 241 TCCTTTGGGC ACTTACCCTT TGATGATGGG GTGGAGGGGG TAGGGGTAGG GTAGTGGGGT 7939 |||||||||| ||| || | |||||||| | ||||||| || | | || || | |||| TCCTTTGGGC CCTTTCCGTC TGATGATGTG GTGGAGGTGG T--GTAAGGG GTGGAGGGGG 299 TTGGGGTGTG GGGG 7925 | ||||| | | || TAGGGGTAGG GTGG 313 hqPGS_C08HBa0060C12.1-_SGN-E356551- (8238 7925) ******************************************************************************** EST sequence 221 -strand 507 n (File: SGN-E311118-) 1 TTTTGCAAAA TGGAGAAATT TGTCTATAGC ATAATAAATT AACATTGAAA GTCCTTAGGG 61 ACATATTTGC CACAGCTGTA GAGTAACAAG CTTAGTGAAA GTGAAACATT TAGGTTAATT 121 CACAATAGAT TAGCTTTAAG GGCAGTGCAA AGGCAATCAG CAGCATCAAG ATCAGCAAGT 181 CCATGAATTA AAGAGCAACA TTTAGTCTTG GCTGGGCTAC TTCCAATAAC AAGGTGCACT 241 AAGTCATTTA GCAGATTGGC ACAAGCATTT AGCTTTAGTG TGTCCTGTGG GCACTTTCCG 301 TTTGATGATG GGGTGAAGGG GGTGGAAGGG GTGGAGAGGG TAGGGGTAGG GTGGGGTTTG 361 GGGTGGTGTT TGTGGTGTGG GGGTGGTGGA CATGGGATAT AAAAAAAACT AACCATAGTG 421 AAGAAAAGAA TGTTCAATGT GAGAACTAGG GCAATTGAGG TTGCACCAAA CTTGGCCATT 481 TTTTGAAAGT TAAAGAAATT TAACTCT Predicted gene structure (within gDNA segment 10078 to 6652): Exon 1 8227 7925 ( 303 n); cDNA 54 354 ( 301 n); score: 0.832 MATCH C08HBa0060C12.1- SGN-E311118- 0.832 303 0.598 C PGS_C08HBa0060C12.1-_SGN-E311118- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||| || |||||||| |||||||||| | |||||| CTTAGGGACA TATTTGCCAC AGCTGTAGAG TAACAAGCTT AGTGAAAGTG AAACATTTAG 113 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||| | || | ||| | |||||||||| |||||||||| ||| |||||| |||||||||| GTTAATTCAC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAATCAGCAG CATCAAGATC 173 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 233 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | ||||||||| ||||||||| |||||||||| ||| |||||| GTGCACTAAG TCATTTAGCA GATTGGCACA AGCATTTAGC TTTAGTGTGT CCTGTGGGCA 293 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| || ||| |||||||||| || ||||||| || ||| | | | || | ||||| || CTTTCCGTTT GATGATGGGG TGAAGGGGGT --GGAAGGGG TGGAGAGGGT AGGGGTAGGG 351 GGG 7925 || TGG 354 hqPGS_C08HBa0060C12.1-_SGN-E311118- (8227 7925) ******************************************************************************** EST sequence 112 -strand 442 n (File: SGN-E352792-) 1 GCAAAATGGA GAAATTTGTC TATAGCATAA TAAATTAACA TTGGAAGTCC TTAGGGACAT 61 ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG TTAATTCCCA 121 ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA GCAAGTCCAT 181 GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG TGCACTAAGT 241 CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC TTTCCCTTTG 301 ATGATGGGGT GGAGGGGGTG GAAGGGGTGG AGGGGGTAGG GGTAGGGTGG GGTTTGGGGT 361 GGTGTTTGTG GTGTGGGGGT GGTGGACATG GGATATAAGT GGAACTAACC ATAGTGAAGA 421 AAAGAATGTT CAATGTGAGA AC Predicted gene structure (within gDNA segment 10038 to 7262): Exon 1 8227 7925 ( 303 n); cDNA 50 350 ( 301 n); score: 0.865 MATCH C08HBa0060C12.1- SGN-E352792- 0.865 303 0.686 C PGS_C08HBa0060C12.1-_SGN-E352792- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 109 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 169 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 229 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 289 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 347 GGG 7925 || TGG 350 hqPGS_C08HBa0060C12.1-_SGN-E352792- (8227 7925) ******************************************************************************** EST sequence 256 -strand 527 n (File: SGN-E290800-) 1 TTTTTTTTTT GCAAAATGGA GAAATTTGTC TATAGCATAA TAAATTAACA TTGGCAGTCC 61 TTAGGCACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 121 TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 181 GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 241 TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 301 TTTCCCTTTG ATGATGGGGT GGAGGGGGTG GAAGGGGTGG AGGGGGTAGG GGTAGGGTGG 361 GGTTTGGGGT GGTGTTTGTG GTGTGGGGGT GGTGGACATG GGATATAAGT GGAACTAACC 421 ATAGTGAAGA AAAGAATGTT CAATGTGAGA ACTAGGGCAA TTGAGGTTGC ACCAAACTTG 481 GCCATTTTTT GAAAGTTAAA GAAATTTAAC TCTCTCAACA ATTGTGA Predicted gene structure (within gDNA segment 10138 to 6512): Exon 1 8227 7925 ( 303 n); cDNA 60 360 ( 301 n); score: 0.865 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E290800- 0.865 303 0.575 C PGS_C08HBa0060C12.1-_SGN-E290800- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGCACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 119 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 179 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 239 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 299 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 357 GGG 7925 || TGG 360 hqPGS_C08HBa0060C12.1-_SGN-E290800- (8227 7925) ******************************************************************************** EST sequence 259 -strand 535 n (File: SGN-E346405-) 1 TTTTTTTTTT TGCAAAATGG AGAAATTTGT CTATAGCATA ATAAATTAAC ATTGGAAGTC 61 CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 121 GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 181 AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 241 GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 301 CTTTCCCTTT GATGATGGGG TGGAGGGGGT GGAAGGGGTG GAGGGGGTAG GGGTAGGGTG 361 GGGTTTGGGG TGGTGTTTGT GGTGTGGGGG TGGTGGACAT GGGATATAAG TGGAACTAAC 421 CATAGTGAAG AAAAGAATGT TCAATGTGAG AACTAGGGCA ATTGAGGTTG CACCAAACTT 481 GGCCATTTTT TTGAAAGTTA AAGAAATTTA ACTCTCTCAA CAATTGTGAA AAATG Predicted gene structure (within gDNA segment 10148 to 6442): Exon 1 8227 7925 ( 303 n); cDNA 61 361 ( 301 n); score: 0.865 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E346405- 0.865 303 0.566 C PGS_C08HBa0060C12.1-_SGN-E346405- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 120 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 180 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 240 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 300 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 358 GGG 7925 || TGG 361 hqPGS_C08HBa0060C12.1-_SGN-E346405- (8227 7925) ******************************************************************************** EST sequence 267 -strand 533 n (File: SGN-E292937-) 1 TTTTTTTTTT TTTTTTGCAA AATGGAGAAA TTTGTCTATA GCATAATAAA TTANCATTGG 61 AAGTCCTTAG GGACATATTT GCCACAGTTG TTGAGTAACA AGCTTAGTGA AAGTGGAACA 121 TTTAGGTTAA TTCCCAATAG ATTAGCTTTA AGGGCAGTGC AAAGGCAAAC AGCAGCATCA 181 AGATCAGCAA GTCCATGAAT TAAAGAGCAA CATTTAGTCT TGGCTGGGCT ACTTCCAATA 241 ACAAGGTGCA TTAAGTCATT TAGCAAATTG GCACAAGCAT TTAGCTTTAG TGTGTCCTTT 301 GGGCACTTTC CCTTTGATGA TGGGGTGCAG GGGGTGGAAG GGGTGGAGGG GGTAGGGGTA 361 GGGTGGGGTT TGGGGTGGTG TTTGTGGTGT GGGGGTGGTG GACATGGGAT ATAAGTGGAA 421 CTAACCATAG TGAAGAAAAG AATGTTCAAT GTGAGAACTA GGGCAATTGA GGTTGCACCA 481 AACTTGGCCA TTTTTTGAAA GTTAAAGAAA TTTAACTCTC TCAACAATTG TGA Predicted gene structure (within gDNA segment 10198 to 6512): Exon 1 8227 7925 ( 303 n); cDNA 66 366 ( 301 n); score: 0.861 PPA cDNA 16 1 MATCH C08HBa0060C12.1- SGN-E292937- 0.861 303 0.568 C PGS_C08HBa0060C12.1-_SGN-E292937- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 125 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 185 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 245 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCATTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 305 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| || ||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGCAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 363 GGG 7925 || TGG 366 hqPGS_C08HBa0060C12.1-_SGN-E292937- (8227 7925) ******************************************************************************** EST sequence 276 -strand 529 n (File: SGN-E292993-) 1 TTTTTTTTTT GCAAAATGGA GAAATTTGTC TATAGCATAA TAAATTAACA TTGGAAGTCC 61 TTAGGGACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 121 TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 181 GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 241 TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 301 TTTCCCTTTG ATGATGGGGT GGAGGGGGTG GAAGGGGTGG AGGGGGTAGG GGTAGGGTGG 361 GGTTTGGGGT GGTGTTTGTG GTGTGGGGGT GGTGGACATG GGATATAAGT GGAACTAACC 421 ATAGTGAAGA AAAGAATGTT CAATGTGAGA ACTAGGGCAA TTGAGGTTGC ACCAAACTTG 481 GCCATTTTTT TGAAAGTTAA AGAAATTTAA CTCTCTCAAC AATTGTGAA Predicted gene structure (within gDNA segment 10138 to 6492): Exon 1 8227 7925 ( 303 n); cDNA 60 360 ( 301 n); score: 0.865 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E292993- 0.865 303 0.573 C PGS_C08HBa0060C12.1-_SGN-E292993- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 119 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 179 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 239 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 299 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 357 GGG 7925 || TGG 360 hqPGS_C08HBa0060C12.1-_SGN-E292993- (8227 7925) ******************************************************************************** EST sequence 5 -strand 448 n (File: SGN-E350433-) 1 TTTTTTTTTT GCAAAATGGA GAAATTTGTC TATAGCATAA TAAATTAACA TTGGAAGTCC 61 TTAGGGACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 121 TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 181 GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 241 TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 301 TTTCCCTTTG ATGATGGGGT GGAGGGGGTG GAAGGGGTGG AGGGGGTAGG GGTAGGGTGG 361 GGTTTGGGGT GGTGTTTGTG GTGTGGGGGT GGTGGACATG GGATATAAGT GGAACTAACC 421 ATAGTGAAGA AAAGAATGTT CAATGTGA Predicted gene structure (within gDNA segment 10138 to 7266): Exon 1 8227 7925 ( 303 n); cDNA 60 360 ( 301 n); score: 0.865 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E350433- 0.865 303 0.676 C PGS_C08HBa0060C12.1-_SGN-E350433- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 119 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 179 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 239 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 299 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 357 GGG 7925 || TGG 360 hqPGS_C08HBa0060C12.1-_SGN-E350433- (8227 7925) ******************************************************************************** EST sequence 9 -strand 443 n (File: SGN-E351124-) 1 TTTTTTTTTT TTTGCAAAAT GGAGAAATTT GTCTATAGCA TAATAAATTA ACATTGGAAG 61 TCCTTAGGGA CATATTTGCC ACAGTTGTTG AGTAACAAGC TTAGTGAAAG TGGAACATTT 121 AGGTTAATTC CCAATAGATT AGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA 181 TCAGCAAGTC CATGAATTAA AGAGCAACAT TTAGTCTTGG CTGGGCTACT TCCAATAACA 241 AGGTGCACTA AGTCATTTAG CAAATTGGCA CAAGCATTTA GCTTTAGTGT GTCCTTTGGG 301 CACTTTCCCT TTGATGATGG GGTGGAGGGG GTGGAAGGGG TGGAGGGGGT AGGGGTAGGG 361 TGGGGTTTGG GGTGGTGTTT GTGGTGTGGG GGTGGTGGAC ATGGGATATA AGTGGAACTA 421 ACCATAGTGA AGAAAAGAAT GTT Predicted gene structure (within gDNA segment 10168 to 6248): Exon 1 8227 7925 ( 303 n); cDNA 63 363 ( 301 n); score: 0.865 PPA cDNA 13 1 MATCH C08HBa0060C12.1- SGN-E351124- 0.865 303 0.684 C PGS_C08HBa0060C12.1-_SGN-E351124- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 122 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 182 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 242 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 302 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 360 GGG 7925 || TGG 363 hqPGS_C08HBa0060C12.1-_SGN-E351124- (8227 7925) ******************************************************************************** EST sequence 19 -strand 449 n (File: SGN-E351841-) 1 TTTTTTTTTT TGCAAAATGG AGAAATTTGT CTATAGCATA ATAAATTAAC ATTGGAAGTC 61 CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATNTAG 121 GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 181 AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 241 GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 301 CTTTCCCTTT GATGATGGGG TGGAGGGGGT GGAAGGGGTG GAGGGGGTAG GGGTAGGGTG 361 GGGTTTGGGG TGGTGTTTGT GGTGTGGGGG TGGTGGACAT GGGATATAAG TGGAACTAAC 421 CATAGTGAAG AAAAGAATGT TCAATGTGA Predicted gene structure (within gDNA segment 10148 to 7266): Exon 1 8227 7925 ( 303 n); cDNA 61 361 ( 301 n); score: 0.861 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E351841- 0.861 303 0.675 C PGS_C08HBa0060C12.1-_SGN-E351841- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | || ||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATNTAG 120 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 180 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 240 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 300 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 358 GGG 7925 || TGG 361 hqPGS_C08HBa0060C12.1-_SGN-E351841- (8227 7925) ******************************************************************************** EST sequence 26 -strand 449 n (File: SGN-E306457-) 1 TTTTTTTTTT TGCAAAATGG AGAAATTTGT CTATAGCATA ATAAATTAAC ATTGGAAGTC 61 CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 121 GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 181 AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 241 GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 301 CTTTCCCTTT GATGATGGGG TGGAGGGGGT GGAAGGGGTG GAGGGGGTAG GGGTAGGGTG 361 GGGTTTGGGG TGGTGTTTGT GGTGTGGGGG TGGTGGACAT GGGATATAAG TGGAACTAAC 421 CATAGTGAAG AAAAGAATGT TCAATGTGA Predicted gene structure (within gDNA segment 10148 to 7266): Exon 1 8227 7925 ( 303 n); cDNA 61 361 ( 301 n); score: 0.865 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E306457- 0.865 303 0.675 C PGS_C08HBa0060C12.1-_SGN-E306457- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 120 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 180 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 240 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 300 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 358 GGG 7925 || TGG 361 hqPGS_C08HBa0060C12.1-_SGN-E306457- (8227 7925) ******************************************************************************** EST sequence 254 -strand 448 n (File: SGN-E357727-) 1 TTTTTTTTTT GCAAAATGGA GAAATTTGTC TATAGCATAA TAAATTAACA TTGGAAGTCC 61 TTAGGGACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 121 TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 181 GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 241 TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 301 TTTCCCTTTG ATGATGGGGT GGAGGGGGTG GAAGGGGTGG AGGGGGTAGG GGTAGGGTGG 361 GGTTTGGGGT GGTGTTTGTG GTGTGGGGGT GGTGGACATG GGATATAAGT GGAACTAACC 421 ATAGTGAAGA AAAGAATGTT CAATGTGA Predicted gene structure (within gDNA segment 10138 to 7266): Exon 1 8227 7925 ( 303 n); cDNA 60 360 ( 301 n); score: 0.865 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E357727- 0.865 303 0.676 C PGS_C08HBa0060C12.1-_SGN-E357727- (8227 7925) Alignment (genomic DNA sequence = upper lines): CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG GGATATTTAG 8168 ||| || || |||||||||| | ||||| || |||||||| |||||||||| | | |||||| CTTAGGGACA TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG 119 ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 8108 ||||||||| || | ||| | |||||||||| |||||||||| |||||||||| |||||||||| GTTAATTCCC AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC 179 AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC CAACAACAAG 8048 | ||||||| | |||||||| ||||||| | |||||||||| || ||||||| ||| |||||| AGCAAGTCCA TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG 239 GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT CCTTTGGGCA 7988 ||||| ||| ||| | | |||||||||| ||||||||| |||||||||| |||||||||| GTGCACTAAG TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA 299 CTTACCCTTT GATGATGGGG TGGAGGGGGT AGGGGTAGGG TAGTGGGGTT TGGGGTGTGG 7928 ||| |||||| |||||||||| |||||||||| || ||| | | |||| | ||||| || CTTTCCCTTT GATGATGGGG TGGAGGGGGT --GGAAGGGG TGGAGGGGGT AGGGGTAGGG 357 GGG 7925 || TGG 360 hqPGS_C08HBa0060C12.1-_SGN-E357727- (8227 7925) ******************************************************************************** EST sequence 63 -strand 532 n (File: SGN-E294620-) 1 TTTTTTTTTT TTTTGCAAAA ATGGAGAAAT TTGTCTATAG CATAATAAAT TAACATTGGA 61 AGTCTTTAGG GACATATTTG CCACAGTTGT TGAGTACCAA GCTTAGTGAA AGTGGAACAT 121 TTAGGTTAAT TCCCAATAGA TTAGCTTTAA GGGCAGTGCA AAGGCAACCA GCAGCATCAA 181 GATCAGCAAG TCCATGAATT AAAGAGCAAC ATTTAGTCTT GGCTGGGCTA CTTCCAATAA 241 CAAGGTGCAC TAAGTCATTT AGCAAATTGG CACAAGCATT TAGCTTTAGT GTGTCTTTTG 301 GGCACTTTCC TTTTGATGAT GGGGTGGAGG GGGTGGAAGG GGTGGAGGGG GTAGGGGTAG 361 GGTGGGGTTT GGGGTGGTGT TTGTGGTGTG GGGGTGGTGG ACATGGGATA TAAGTGGAAC 421 TAACCATAGT GAAGAAAAGA ATGTTCAATG TGAGAACTAG GGCAATTGAG GTTGCACCAA 481 ACTTGGCCAT TTTTTGAAAG TTAAAGAAAT TTAACTCTCT CAACAATTGT GA Predicted gene structure (within gDNA segment 10188 to 6512): Exon 1 8226 7925 ( 302 n); cDNA 66 365 ( 300 n); score: 0.851 PPA cDNA 14 1 MATCH C08HBa0060C12.1- SGN-E294620- 0.851 302 0.568 C PGS_C08HBa0060C12.1-_SGN-E294620- (8226 7925) Alignment (genomic DNA sequence = upper lines): TTGGGTGCAT ATTTGCCACA ATTGTTAAGC AACAAGCTAA GTGAAAGTGG GATATTTAGA 8167 || || ||| |||||||||| ||||| || | |||||| | |||||||||| | |||||| TTAGGGACAT ATTTGCCACA GTTGTTGAGT ACCAAGCTTA GTGAAAGTGG AACATTTAGG 125 TTAATTCCCA ACACATTGGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 8107 |||||||||| | | ||| || |||||||||| |||||||||| || ||||||| |||||||||| TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AACCAGCAGC ATCAAGATCA 185 ACAAGTCCTT CAATTAAAGA GCAACACTGA GTCTTGGCTG GACTACTTCC AACAACAAGG 8047 ||||||| | ||||||||| |||||| | | |||||||||| | |||||||| || ||||||| GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 245 TGCAATAAAT CACCCAATAA ATTGGCACAA GCATTTAGTT TTAGTGTGTC CTTTGGGCAC 7987 |||| ||| | || | || |||||||||| |||||||| | |||||||||| ||||||||| TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC TTTTGGGCAC 305 TTACCCTTTG ATGATGGGGT GGAGGGGGTA GGGGTAGGGT AGTGGGGTTT GGGGTGTGGG 7927 || || |||| |||||||||| ||||||||| || |||| | |||| | ||||| || TTTCCTTTTG ATGATGGGGT GGAGGGGGT- -GGAAGGGGT GGAGGGGGTA GGGGTAGGGT 363 GG 7925 || GG 365 hqPGS_C08HBa0060C12.1-_SGN-E294620- (8226 7925) ******************************************************************************** EST sequence 164 -strand 524 n (File: SGN-E353117-) 1 TTTTTTTTTG CAAAAATGGA GAAATTGTTC TATAGCATAA TAAATTAACA TTGGAAGTCT 61 TTAGGGACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 121 TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 181 GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 241 TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 301 TTTCCCTTTG ATGATGGGGT GGAGGGGGTG GAAGGGGTGG AGGGGGTAGG GGTAGGGTGG 361 GGTTTGGGGT GGTGTTTGTG GTGTGGGGGT GGTGGACATG GGATATAAGT GGAACTAACC 421 ATAGTGAAGA AAAGAATGTT CAATGTGAGA ACTAGGGCAA TTGAGGTTGC ACCAAACTTG 481 GCCATTTTTT GAAAGTTAAA GAAATTTAAC TCTCTCAACA ATTG Predicted gene structure (within gDNA segment 10138 to 6542): Exon 1 8226 7925 ( 302 n); cDNA 61 360 ( 300 n); score: 0.864 MATCH C08HBa0060C12.1- SGN-E353117- 0.864 302 0.576 C PGS_C08HBa0060C12.1-_SGN-E353117- (8226 7925) Alignment (genomic DNA sequence = upper lines): TTGGGTGCAT ATTTGCCACA ATTGTTAAGC AACAAGCTAA GTGAAAGTGG GATATTTAGA 8167 || || ||| |||||||||| ||||| || |||||||| | |||||||||| | |||||| TTAGGGACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 120 TTAATTCCCA ACACATTGGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 8107 |||||||||| | | ||| || |||||||||| |||||||||| |||||||||| |||||||||| TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 180 ACAAGTCCTT CAATTAAAGA GCAACACTGA GTCTTGGCTG GACTACTTCC AACAACAAGG 8047 ||||||| | ||||||||| |||||| | | |||||||||| | |||||||| || ||||||| GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 240 TGCAATAAAT CACCCAATAA ATTGGCACAA GCATTTAGTT TTAGTGTGTC CTTTGGGCAC 7987 |||| ||| | || | || |||||||||| |||||||| | |||||||||| |||||||||| TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 300 TTACCCTTTG ATGATGGGGT GGAGGGGGTA GGGGTAGGGT AGTGGGGTTT GGGGTGTGGG 7927 || ||||||| |||||||||| ||||||||| || |||| | |||| | ||||| || TTTCCCTTTG ATGATGGGGT GGAGGGGGT- -GGAAGGGGT GGAGGGGGTA GGGGTAGGGT 358 GG 7925 || GG 360 hqPGS_C08HBa0060C12.1-_SGN-E353117- (8226 7925) ******************************************************************************** EST sequence 228 -strand 445 n (File: SGN-E356325-) 1 TTTTTTTGCA AAATGGAGAA ATTTGTCTAT AGCATAATAA ATTAACATTG GAAGTCTTTA 61 GGGACATATT TGCCACAGTT GTTGAGTAAC AAGCTTAGTG AAAGTGGAAC ATTTAGGTTA 121 ATTCCCAATA GATTAGCTTT AAGGGCAGTG CAAAGGCAAA CAGCAGCATC AAGATCAGCA 181 AGTCCATGAA TTAAAGAGCA ACATTTAGTC TTGGCTGGGC TACTTCCAAT AACAAGGTGC 241 ACTAAGTCAT TTAGCAAATT GGCACAAGCA TTTAGCTTTA GTGTGTCCTT TGGGCACTTT 301 CCCTTTGATG ATGGGGTGGA GGGGGTGGAA GGGGTGGAGG GGGTAGGGGT AGGGTGGGGT 361 TTGGGGTGGT GTTTGTGGTG TGGGGGTGGT GGACATGGGA TATAAGTGGA ACTAACCATA 421 GTGAAGAAAA GAATGTTCAA TGTGA Predicted gene structure (within gDNA segment 10108 to 7266): Exon 1 8226 7925 ( 302 n); cDNA 58 357 ( 300 n); score: 0.864 MATCH C08HBa0060C12.1- SGN-E356325- 0.864 302 0.679 C PGS_C08HBa0060C12.1-_SGN-E356325- (8226 7925) Alignment (genomic DNA sequence = upper lines): TTGGGTGCAT ATTTGCCACA ATTGTTAAGC AACAAGCTAA GTGAAAGTGG GATATTTAGA 8167 || || ||| |||||||||| ||||| || |||||||| | |||||||||| | |||||| TTAGGGACAT ATTTGCCACA GTTGTTGAGT AACAAGCTTA GTGAAAGTGG AACATTTAGG 117 TTAATTCCCA ACACATTGGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 8107 |||||||||| | | ||| || |||||||||| |||||||||| |||||||||| |||||||||| TTAATTCCCA ATAGATTAGC TTTAAGGGCA GTGCAAAGGC AAACAGCAGC ATCAAGATCA 177 ACAAGTCCTT CAATTAAAGA GCAACACTGA GTCTTGGCTG GACTACTTCC AACAACAAGG 8047 ||||||| | ||||||||| |||||| | | |||||||||| | |||||||| || ||||||| GCAAGTCCAT GAATTAAAGA GCAACATTTA GTCTTGGCTG GGCTACTTCC AATAACAAGG 237 TGCAATAAAT CACCCAATAA ATTGGCACAA GCATTTAGTT TTAGTGTGTC CTTTGGGCAC 7987 |||| ||| | || | || |||||||||| |||||||| | |||||||||| |||||||||| TGCACTAAGT CATTTAGCAA ATTGGCACAA GCATTTAGCT TTAGTGTGTC CTTTGGGCAC 297 TTACCCTTTG ATGATGGGGT GGAGGGGGTA GGGGTAGGGT AGTGGGGTTT GGGGTGTGGG 7927 || ||||||| |||||||||| ||||||||| || |||| | |||| | ||||| || TTTCCCTTTG ATGATGGGGT GGAGGGGGT- -GGAAGGGGT GGAGGGGGTA GGGGTAGGGT 355 GG 7925 || GG 357 hqPGS_C08HBa0060C12.1-_SGN-E356325- (8226 7925) ******************************************************************************** EST sequence 275 -strand 497 n (File: SGN-E293213-) 1 TAGCATAATA AATTAACATT GAAAGTCTGT AGGGACATAT GTGCCACAGT TGTTGAGTAA 61 CAAGCTTAGT GAAAGTGGAA CATTTAGGTT AATTCCCAAT ACATTAGCTT TAAGGGCAGT 121 GCAAAGGCTA ACAGCAGCAT CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT 181 CTTGGATGGG CTACTTCCAA TAACAAGGTG CTTTAAGTCA TTTAGCGAAT TGGCACAAGC 241 ATTTAGCTTT AGTGTGTCCT TTGGGCACTT TCCCTTTGAT GATGGGGTGC AGGGGGTGGA 301 AGGGGTGGAG GGGGTAGGGG TAGGGTGGGG TTTGGGGTGG TGTTTGTGGT GTGGGGGTGG 361 TGGACATGGG ATATAAGTGG AACTAACCAT AGTGAAGAAA AGAATGTTCA ATGTGAGAAC 421 TAGGGCAATT GAGGTTGCAC CAAACTTGGC CATTTTTTTG AAAGTTAAAG AAATTTAACT 481 CTCTCAACAA TTGTGAA Predicted gene structure (within gDNA segment 9818 to 6492): Exon 1 8223 7925 ( 299 n); cDNA 32 328 ( 297 n); score: 0.849 MATCH C08HBa0060C12.1- SGN-E293213- 0.849 299 0.602 C PGS_C08HBa0060C12.1-_SGN-E293213- (8223 7925) Alignment (genomic DNA sequence = upper lines): GGTGCATATT TGCCACAATT GTTAAGCAAC AAGCTAAGTG AAAGTGGGAT ATTTAGATTA 8164 || ||||| ||||||| || ||| || ||| ||||| |||| ||||||| | |||||| ||| GGGACATATG TGCCACAGTT GTTGAGTAAC AAGCTTAGTG AAAGTGGAAC ATTTAGGTTA 91 ATTCCCAACA CATTGGCTTT AAGGGCAGTG CAAAGGCAAA CAGCAGCATC AAGATCAACA 8104 |||||||| | |||| ||||| |||||||||| ||||||| || |||||||||| ||||||| || ATTCCCAATA CATTAGCTTT AAGGGCAGTG CAAAGGCTAA CAGCAGCATC AAGATCAGCA 151 AGTCCTTCAA TTAAAGAGCA ACACTGAGTC TTGGCTGGAC TACTTCCAAC AACAAGGTGC 8044 ||||| | || |||||||||| ||| | |||| |||| ||| | ||||||||| |||||||||| AGTCCATGAA TTAAAGAGCA ACATTTAGTC TTGGATGGGC TACTTCCAAT AACAAGGTGC 211 AATAAATCAC CCAATAAATT GGCACAAGCA TTTAGTTTTA GTGTGTCCTT TGGGCACTTA 7984 ||| ||| | |||| |||||||||| ||||| |||| |||||||||| ||||||||| TTTAAGTCAT TTAGCGAATT GGCACAAGCA TTTAGCTTTA GTGTGTCCTT TGGGCACTTT 271 CCCTTTGATG ATGGGGTGGA GGGGGTAGGG GTAGGGTAGT GGGGTTTGGG GTGTGGGGG 7925 |||||||||| |||||||| | |||||| || |||| | |||| | ||| || || || CCCTTTGATG ATGGGGTGCA GGGGGT--GG AAGGGGTGGA GGGGGTAGGG GTAGGGTGG 328 hqPGS_C08HBa0060C12.1-_SGN-E293213- (8223 7925) ******************************************************************************** EST sequence 108 -strand 444 n (File: SGN-E296685-) 1 TAACAAGCTT AGTGAAAGTG GAACATTTAG GTTAATTCCC AATAGATTAG CTTTAAGGGC 61 AGTGCAAAGG CAAACAGCAG CATCAAGATC AGCAAGTCCA TGAATTAAAG AGCAACATTT 121 AGTCTTGGCT GGGCTACTTC CAATAACAAG GTGCACTAAG TCATTTAGCA AATTGGCACA 181 AGCATTTAGC TTTAGTGTGT CCTTTGGGCA CTTTCCCTTT GATGATGGGG TGGAGGGGGT 241 GGAAGGGGTG GAGGGGGTAG GGGTAGGGTG GGGTTTGGGG TGGTGTTTGT GGTGTGGGGG 301 TGGTGGACAT GGGATATAAG TGGAACTAAC CATAGTGAAG AAAAGAATGT TCAATGTGAG 361 AACTAGGGCA ATTGAGGTTG CACCAAACTT GGCCATTTTT TGAAAGTTAA AGAAATTTAA 421 CTCTCTCAAC AATTGTGAAA AATG Predicted gene structure (within gDNA segment 9248 to 6452): Exon 1 8196 7925 ( 272 n); cDNA 2 271 ( 270 n); score: 0.871 MATCH C08HBa0060C12.1- SGN-E296685- 0.871 272 0.613 C PGS_C08HBa0060C12.1-_SGN-E296685- (8196 7925) Alignment (genomic DNA sequence = upper lines): AACAAGCTAA GTGAAAGTGG GATATTTAGA TTAATTCCCA ACACATTGGC TTTAAGGGCA 8137 |||||||| | |||||||||| | |||||| |||||||||| | | ||| || |||||||||| AACAAGCTTA GTGAAAGTGG AACATTTAGG TTAATTCCCA ATAGATTAGC TTTAAGGGCA 61 GTGCAAAGGC AAACAGCAGC ATCAAGATCA ACAAGTCCTT CAATTAAAGA GCAACACTGA 8077 |||||||||| |||||||||| |||||||||| ||||||| | ||||||||| |||||| | | GTGCAAAGGC AAACAGCAGC ATCAAGATCA GCAAGTCCAT GAATTAAAGA GCAACATTTA 121 GTCTTGGCTG GACTACTTCC AACAACAAGG TGCAATAAAT CACCCAATAA ATTGGCACAA 8017 |||||||||| | |||||||| || ||||||| |||| ||| | || | || |||||||||| GTCTTGGCTG GGCTACTTCC AATAACAAGG TGCACTAAGT CATTTAGCAA ATTGGCACAA 181 GCATTTAGTT TTAGTGTGTC CTTTGGGCAC TTACCCTTTG ATGATGGGGT GGAGGGGGTA 7957 |||||||| | |||||||||| |||||||||| || ||||||| |||||||||| ||||||||| GCATTTAGCT TTAGTGTGTC CTTTGGGCAC TTTCCCTTTG ATGATGGGGT GGAGGGGGT- 240 GGGGTAGGGT AGTGGGGTTT GGGGTGTGGG GG 7925 || |||| | |||| | ||||| || || -GGAAGGGGT GGAGGGGGTA GGGGTAGGGT GG 271 hqPGS_C08HBa0060C12.1-_SGN-E296685- (8196 7925) ******************************************************************************** EST sequence 171 -strand 434 n (File: SGN-E354184-) 1 AAGCTTAGTG AAAGTGGAAC ATTTAGGTTA ATTCCCAATA GATTAGCTTT AAGGGCAGTG 61 CAAAGGCAAA CAGCAGCATC AAGATCAGCA AGTCCATGAA TTAAAGAGCA ACATTTAGTC 121 TTGGCTGGGC TACTTCCAAT AACAAGGTGC ACTAAGTCAT TTAGCAAATT GGCACAAGCA 181 TTTAGCTTTA GTGTGTCCTT TGGGCACTTT CCCTTTGATG ATGGGGTGGA GGGGGTGGAA 241 GGGGTGGAGG GGGTAGGGGT AGGGTGGGGT TTGGGGTGGT GTTTGTGGTG TGGGGGTGGT 301 GGACATGGGA TATAAGTGGA ACTAACCATA GTGAAGAAAA GAATGTTCAA TGTGAGAACT 361 AGGGCAATTG AGGTTGCACC AAACTTGGCC ATTTTTTGAA AGTTAAAGAA ATTTAACTCT 421 CTCAACAATT GTGA Predicted gene structure (within gDNA segment 9208 to 6512): Exon 1 8193 7925 ( 269 n); cDNA 1 267 ( 267 n); score: 0.870 MATCH C08HBa0060C12.1- SGN-E354184- 0.870 269 0.620 C PGS_C08HBa0060C12.1-_SGN-E354184- (8193 7925) Alignment (genomic DNA sequence = upper lines): AAGCTAAGTG AAAGTGGGAT ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG 8134 ||||| |||| ||||||| | |||||| ||| |||||||| | ||| ||||| |||||||||| AAGCTTAGTG AAAGTGGAAC ATTTAGGTTA ATTCCCAATA GATTAGCTTT AAGGGCAGTG 60 CAAAGGCAAA CAGCAGCATC AAGATCAACA AGTCCTTCAA TTAAAGAGCA ACACTGAGTC 8074 |||||||||| |||||||||| ||||||| || ||||| | || |||||||||| ||| | |||| CAAAGGCAAA CAGCAGCATC AAGATCAGCA AGTCCATGAA TTAAAGAGCA ACATTTAGTC 120 TTGGCTGGAC TACTTCCAAC AACAAGGTGC AATAAATCAC CCAATAAATT GGCACAAGCA 8014 |||||||| | ||||||||| |||||||||| | ||| ||| | ||||| |||||||||| TTGGCTGGGC TACTTCCAAT AACAAGGTGC ACTAAGTCAT TTAGCAAATT GGCACAAGCA 180 TTTAGTTTTA GTGTGTCCTT TGGGCACTTA CCCTTTGATG ATGGGGTGGA GGGGGTAGGG 7954 ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| |||||| || TTTAGCTTTA GTGTGTCCTT TGGGCACTTT CCCTTTGATG ATGGGGTGGA GGGGGT--GG 238 GTAGGGTAGT GGGGTTTGGG GTGTGGGGG 7925 |||| | |||| | ||| || || || AAGGGGTGGA GGGGGTAGGG GTAGGGTGG 267 hqPGS_C08HBa0060C12.1-_SGN-E354184- (8193 7925) ******************************************************************************** EST sequence 218 -strand 433 n (File: SGN-E282131-) 1 GCTTAGTGAA AGTGGAACAT TTAGGTTAAT TCCCAATAGA TTAGCTTTAA GGGCAGTGCA 61 AAGGCAAACA GCAGCATCAA GATCAGCAAG TCCATGAATT AAAGAGCAAC ATTTAGTCTT 121 GGCTGGGCTA CTTCCAATAA CAAGGTGCAG TAAGTCATTT AGCAAATTGG CACAAGCATT 181 TAGCTTTAGT GTGTCCTTTG GGCACTTTCC CTTTGATGAT GGGGTGGAGG GGGTGGAAGG 241 GGTGGAGGGG GTAGGGGTAG GGTGGGGTTT GGGGTGGTGT TTGTGGTGTG GGGGTGGTGG 301 ACATGGGATA TAAGTGGAAC TAACCATAGT GAAGAAAAGA ATGTTCAATG TGAGAACTAG 361 GGCAATTGAG GTTGCACCAA ACTTGGCCAT TTTTTGAAAG TTAAAGAAAT TTAACTCTCT 421 CAACAATTGT GAA Predicted gene structure (within gDNA segment 9188 to 6502): Exon 1 8191 7925 ( 267 n); cDNA 1 265 ( 265 n); score: 0.869 MATCH C08HBa0060C12.1- SGN-E282131- 0.869 267 0.617 C PGS_C08HBa0060C12.1-_SGN-E282131- (8191 7925) Alignment (genomic DNA sequence = upper lines): GCTAAGTGAA AGTGGGATAT TTAGATTAAT TCCCAACACA TTGGCTTTAA GGGCAGTGCA 8132 ||| |||||| ||||| | || |||| ||||| |||||| | | || ||||||| |||||||||| GCTTAGTGAA AGTGGAACAT TTAGGTTAAT TCCCAATAGA TTAGCTTTAA GGGCAGTGCA 60 AAGGCAAACA GCAGCATCAA GATCAACAAG TCCTTCAATT AAAGAGCAAC ACTGAGTCTT 8072 |||||||||| |||||||||| ||||| |||| ||| | |||| |||||||||| | | |||||| AAGGCAAACA GCAGCATCAA GATCAGCAAG TCCATGAATT AAAGAGCAAC ATTTAGTCTT 120 GGCTGGACTA CTTCCAACAA CAAGGTGCAA TAAATCACCC AATAAATTGG CACAAGCATT 8012 |||||| ||| ||||||| || ||||||||| ||| ||| | ||||||| |||||||||| GGCTGGGCTA CTTCCAATAA CAAGGTGCAG TAAGTCATTT AGCAAATTGG CACAAGCATT 180 TAGTTTTAGT GTGTCCTTTG GGCACTTACC CTTTGATGAT GGGGTGGAGG GGGTAGGGGT 7952 ||| |||||| |||||||||| ||||||| || |||||||||| |||||||||| |||| || TAGCTTTAGT GTGTCCTTTG GGCACTTTCC CTTTGATGAT GGGGTGGAGG GGGT--GGAA 238 AGGGTAGTGG GGTTTGGGGT GTGGGGG 7925 |||| | || || | ||||| || || GGGGTGGAGG GGGTAGGGGT AGGGTGG 265 hqPGS_C08HBa0060C12.1-_SGN-E282131- (8191 7925) ******************************************************************************** EST sequence 246 -strand 400 n (File: SGN-E312683-) 1 ATTCCCAATA GATTAGCTTT AAGGGCAGTG CAAAGGCAAA CAGCAGCATC AAGATCAGCA 61 AGTCCATGAA TTAAAGAGCA ACATTTAGTC TTGGCTGGGC TACTTCCAAT AACAAGGTGC 121 ATTAAGTCAT TTAGCAAATT GGCGCAAGCA TTTAGCTTTA GTGTGTCCTT TGGGCACTTT 181 CCTTTTGATG ATGGGGTGAA AGGGGTGGAA GGGGTGCAGG GGGTAGGGGT AGGGTGGGGT 241 TTGGGGTGGT GTTTGTGGTG TGGGGGTGGT GGACATGGGA TATAAGTGGA ACTAACCATA 301 GTGAAGAAAA GAATGTTCAA TGTGAGAACT AGGGCAATTG AGGTTGCACC AAACTTGGCC 361 ATTTTTTGAA AGTTAAAGAA ATTTAACTCT CTCAACAATT Predicted gene structure (within gDNA segment 8908 to 6552): Exon 1 8163 7925 ( 239 n); cDNA 1 237 ( 237 n); score: 0.849 MATCH C08HBa0060C12.1- SGN-E312683- 0.849 239 0.598 C PGS_C08HBa0060C12.1-_SGN-E312683- (8163 7925) Alignment (genomic DNA sequence = upper lines): ATTCCCAACA CATTGGCTTT AAGGGCAGTG CAAAGGCAAA CAGCAGCATC AAGATCAACA 8104 |||||||| | ||| ||||| |||||||||| |||||||||| |||||||||| ||||||| || ATTCCCAATA GATTAGCTTT AAGGGCAGTG CAAAGGCAAA CAGCAGCATC AAGATCAGCA 60 AGTCCTTCAA TTAAAGAGCA ACACTGAGTC TTGGCTGGAC TACTTCCAAC AACAAGGTGC 8044 ||||| | || |||||||||| ||| | |||| |||||||| | ||||||||| |||||||||| AGTCCATGAA TTAAAGAGCA ACATTTAGTC TTGGCTGGGC TACTTCCAAT AACAAGGTGC 120 AATAAATCAC CCAATAAATT GGCACAAGCA TTTAGTTTTA GTGTGTCCTT TGGGCACTTA 7984 | ||| ||| | ||||| ||| |||||| ||||| |||| |||||||||| ||||||||| ATTAAGTCAT TTAGCAAATT GGCGCAAGCA TTTAGCTTTA GTGTGTCCTT TGGGCACTTT 180 CCCTTTGATG ATGGGGTGGA GGGGGTAGGG GTAGGGTAGT GGGGTTTGGG GTGTGGGGG 7925 || ||||||| |||||||| | ||||| || |||| |||| | ||| || || || CCTTTTGATG ATGGGGTGAA AGGGGT--GG AAGGGGTGCA GGGGGTAGGG GTAGGGTGG 237 hqPGS_C08HBa0060C12.1-_SGN-E312683- (8163 7925) ******************************************************************************** EST sequence 10 -strand 582 n (File: SGN-E351169-) 1 TTTTTTTTTA TATAAACTCC ACAAATATAT TTCATTTATC ACTCATGATT AAAATGGAAT 61 CATACAACAA AAGAAAACCA ACACTATTGC CTTCCATCTA ACCAATCACA TATAGTAACT 121 CCTTTGAAAA TAAACAAATA TATAAGCATA CAAAACACCA AACACACACA CACACACACT 181 CAAACAAAAA GAAACAAAAT ACACTATATG AAAGTGGATT TTTTTTTTTT TTTTGCAAAA 241 TGGAGAAATT TGTCTATAGC ATAATAAATT AACATTGGAA GTCCTTAGGG ACATATTTGC 301 CACAGTTGTT GAGTAACAAG CTTAGTGAAA GTGGAACATT TAGGTTAATT CCCAATAGAT 361 TAGCTTTAAG GGCAGTGCAA AGGCAAACAG CAGCATCAAG ATCAGCAAGT CCATGAATTA 421 AAGAGCAACA TTTAGTCTTG GCTGGGCTAC TTCCAATAAC AAGGTGCACT AAGTCATTTA 481 GCAAATTGGC ACAAGCATTT AGCTTTAGTG TGTCCTTTGG GCACTTTCCC TTTGATGATG 541 GGGTGGAGGG GGTGGAAGGG GTGGAGGGGG TAGGGGTAGG GT Predicted gene structure (within gDNA segment 12378 to 7068): Exon 1 10454 10446 ( 9 n); cDNA 260 268 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7928 ( 315 n); cDNA 269 581 ( 313 n); score: 0.863 MATCH C08HBa0060C12.1- SGN-E351169- 0.863 324 0.557 C PGS_C08HBa0060C12.1-_SGN-E351169- (10454 10446,8242 7928) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 268 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 268 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 268 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 268 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 268 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 268 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 268 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 268 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 268 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 268 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 268 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 268 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 268 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 268 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 268 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 268 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 268 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 268 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 268 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 268 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 268 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 268 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 268 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 268 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 268 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 268 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 268 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 268 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 268 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 268 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 268 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 268 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 268 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 268 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 268 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 268 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 276 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 336 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 396 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 456 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 516 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 574 GGTGTGG 7928 ||| || GGTAGGG 581 hqPGS_C08HBa0060C12.1-_SGN-E351169- (8242 7928) ******************************************************************************** EST sequence 47 -strand 577 n (File: SGN-E352311-) 1 TTTTTTTTTT TAAACTCCAC AAATATATTT CATTTATCAC TCATGATTAA AATGGAATCA 61 TACAACAAAA GAAAACCAAC ACTATTGCCT TCCATCTAAC CAATCACATA TAGTAACTCC 121 TTTGAAAATA AACAAATATA TAAGCATACA AAACACCAAA CACACACACA CACACACTCA 181 AACAAAAAGA AACAAAATAC ACTATATGAA AGTGGATTTT TTTTTTTTTT TTTGCAAAAT 241 GGAGAAATTT GTCTATAGCA TAATAAATTA ACATTGGAAG TCCTTAGGGA CATATTTGCC 301 ACAGTTGTTG AGTAACAAGC TTAGTGAAAG TGGAACATTT AGGTTAATTC CCAATAGATT 361 AGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAGCAAGTC CATGAATTAA 421 AGAGCAACAT TTAGTCTTGG CTGGGCTACT TCCAATAACA AGGTGCACTA AGTCATTTAG 481 CAAATTGGCA CAAGCATTTA GCTTTAGTGT GTCCTTTGGG CACTTTCCCT TTGATGATGG 541 GGTGGAGGGG GTGGAAGGGG TGGAGGGGGT AGGGGTA Predicted gene structure (within gDNA segment 12368 to 7108): Exon 1 10454 10446 ( 9 n); cDNA 259 267 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7932 ( 311 n); cDNA 268 576 ( 309 n); score: 0.868 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E352311- 0.868 320 0.555 C PGS_C08HBa0060C12.1-_SGN-E352311- (10454 10446,8242 7932) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 267 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 267 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 267 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 267 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 267 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 267 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 267 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 267 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 267 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 267 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 267 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 267 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 267 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 267 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 267 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 267 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 267 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 267 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 267 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 267 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 267 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 267 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 267 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 267 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 267 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 267 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 267 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 267 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 267 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 267 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 267 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 267 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 267 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 267 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 267 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 267 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 275 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 335 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 395 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 455 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 515 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGTAGG GGTAGGGTAG TGGGGTTTGG 7935 |||||||||| ||||||||| |||||||||| ||||||| | | |||| | |||| | || TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT--G GAAGGGGTGG AGGGGGTAGG 573 GGT 7932 ||| GGT 576 hqPGS_C08HBa0060C12.1-_SGN-E352311- (8242 7932) ******************************************************************************** EST sequence 23 -strand 500 n (File: SGN-E306555-) 1 TTTTTTTTTT TTTTATAACA TCGAACATTT TAACATAAAC TTTAAAAGAT GACATTTATT 61 TCATGAAAAG AAGGCAATAA CTATAGCCTC CCTTGTAAAC AAACTAGAAT ACAATAAGGA 121 AGTATACTTC CTTTTGAAAA TAAGCCCACA AAACATCAAA TAATACACTG AAAGAAATTG 181 AACTATATGA ATTGAAAATT TGGCTTATTT GCATTGGAAG TTCTTGGGTG CATATTTGCC 241 ACAATTGTTA AGCAACAAGC TAAGTGAAAG TGGGATATTT AGATTAATTC CCAACACATT 301 GGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAACAAGTC CTTCAATTAA 361 AGAGCAACAC TGAGTCTTGG CTGGACTACT TCCAACAACA AGGTGCAATA AATCACCCAA 421 TAAATTGGCA CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT TTGATGATGG 481 GGTGGAGGGG GTAGATGCTG Predicted gene structure (within gDNA segment 9267 to 7296): Exon 1 8439 7956 ( 484 n); cDNA 12 494 ( 483 n); score: 0.996 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E306555- 0.996 484 0.968 C PGS_C08HBa0060C12.1-_SGN-E306555- (8439 7956) Alignment (genomic DNA sequence = upper lines): TTTATAACAT CAAACATTTT AACATAAACT TTAAAAGATA GACATTTATT TCATGAAAAG 8380 |||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTTATAACAT CGAACATTTT AACATAAACT TTAAAAGAT- GACATTTATT TCATGAAAAG 70 AAGGCAATAA CTATAGCCTC CCTTGTAAAC AAACTAGAAT ACAATAAGGA AGTATACTTC 8320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCAATAA CTATAGCCTC CCTTGTAAAC AAACTAGAAT ACAATAAGGA AGTATACTTC 130 CTTTTGAAAA TAAGCCCACA AAACATCAAA TAATACACTG AAAGAAATTG AACTATATGA 8260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTGAAAA TAAGCCCACA AAACATCAAA TAATACACTG AAAGAAATTG AACTATATGA 190 ATTGAAAATT TGGCTTATTT GCATTGGAAG TTCTTGGGTG CATATTTGCC ACAATTGTTA 8200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAAAATT TGGCTTATTT GCATTGGAAG TTCTTGGGTG CATATTTGCC ACAATTGTTA 250 AGCAACAAGC TAAGTGAAAG TGGGATATTT AGATTAATTC CCAACACATT GGCTTTAAGG 8140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACAAGC TAAGTGAAAG TGGGATATTT AGATTAATTC CCAACACATT GGCTTTAAGG 310 GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAACAAGTC CTTCAATTAA AGAGCAACAC 8080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAACAAGTC CTTCAATTAA AGAGCAACAC 370 TGAGTCTTGG CTGGACTACT TCCAACAACA AGGTGCAATA AATCACCCAA TAAATTGGCA 8020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTCTTGG CTGGACTACT TCCAACAACA AGGTGCAATA AATCACCCAA TAAATTGGCA 430 CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT TTGATGATGG GGTGGAGGGG 7960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCATTTA GTTTTAGTGT GTCCTTTGGG CACTTACCCT TTGATGATGG GGTGGAGGGG 490 GTAG 7956 |||| GTAG 494 hqPGS_C08HBa0060C12.1-_SGN-E306555- (8439 7956) ******************************************************************************** EST sequence 352 +strand 573 n (File: SGN-E372491+) 1 TTTTTTTTTT TTTTTTTTTT TTTAAAAACT CCACAAATAT ATTTCATTTA TCACTCATGA 61 TTAAAATGGA ATCATACAAC AAAAGAAAAC CAACACTATT GCCTTCCATC TAACCAATCA 121 CATATAGTAA CTCCTTTGAA AATAAACAAA TATATAAGCA TACAAAACAC CAAACACACA 181 CACACACACA CTCAAACAAA AAGAAACAAA ATACACTATA TGAAAGTGGA TTTTTTTTTT 241 TTTTTTTGCA AAATGGAAAA ATTTGTCTAT AGCATAAAAA ATTAACATTG GAAGTCCTTA 301 GGGACATATT TGCCACAGTT GTTGAGTAAC AAGCTTAGTG AAAGTGGAAC ATTTAGGTTA 361 ATTCCCAATA AATTAGCTTT AAGGGCAGTG CAAAGGCAAA CAGCAGCATC AAAATCAGCA 421 AGTCCATGAA TTAAAAAGCA ACATTTAGTC TTGGCTGGGC TACTTCCAAT AACAAGGGGC 481 ACTAAGTCAT TTAGCAAATT GGCACAAGCA TTTAGCTTTA GTGTGTCCTT TGGGCACTTT 541 CCCTTTGATG ATGGGGGGGA GGGGGTGGAA GGG Predicted gene structure (within gDNA segment 12498 to 7188): Exon 1 10454 10446 ( 9 n); cDNA 273 281 ( 9 n); score: 0.889 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7958 ( 285 n); cDNA 282 566 ( 285 n); score: 0.874 PPA cDNA 23 1 MATCH C08HBa0060C12.1- SGN-E372491+ 0.874 294 0.513 C PGS_C08HBa0060C12.1-_SGN-E372491+ (10454 10446,8242 7958) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||||| | CATAAAAAA. .......... .......... .......... .......... .......... 281 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 281 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 281 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 281 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 281 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 281 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 281 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 281 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 281 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 281 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 281 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 281 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 281 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 281 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 281 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 281 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 281 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 281 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 281 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 281 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 281 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 281 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 281 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 281 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 281 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 281 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 281 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 281 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 281 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 281 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 281 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 281 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 281 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 281 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 281 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 281 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 289 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 349 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AAATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 409 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 ||| |||| | |||||| | | |||||| ||| |||| | ||| ||||||||| |||||||||| CAAAATCAGC AAGTCCATGA ATTAAAAAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 469 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||| | || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGGG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 529 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGT 7958 |||||||||| ||||||||| ||||||| || ||||||| TTGGGCACTT TCCCTTTGAT GATGGGGGGG AGGGGGT 566 hqPGS_C08HBa0060C12.1-_SGN-E372491+ (8242 7958) ******************************************************************************** EST sequence 22 -strand 556 n (File: SGN-E351727-) 1 TTTTTTTTTT TAAACTCCAC AAATATATTT CATTTATCAC TCATGATTAA AATGGAATCA 61 TACAACAAAA GAAAACCAAC ACTATTGCCT TCCATCTAAC CAATCACATA TAGTAACTCC 121 TTTGAAAATA AACAAATATA TAAGCATACA AAACACCAAA CACACACACA CACACACTCA 181 AACAAAAAGA AACAAAATAC ACTATATGAA AGTGGATTTT TTTTTTTTTT TTTGCAAAAT 241 GGAGAAATTT GTCTATAGCA TAATAAATTA ACATTGGAAG TCCTTAGGGA CATATTTGCC 301 ACAGTTGTTG AGTAACAAGC TTAGTGAAAG TGGAACATTT AGGTTAATTC CCAATAGATT 361 AGCTTTAAGG GCAGTGCAAA GGCAAACAGC AGCATCAAGA TCAGCAAGTC CATGAATTAA 421 AGAGCAACAT TTAGTCTTGG CTGGGCTACT TCCAATAACA AGGTGCACTA AGTCATTTAG 481 CAAATTGGCA CAAGCATTTA GCTTTAGTGT GTCCTTTGGG CACTTTCCCT TTGATGATGG 541 GGTGGAGGGG GTGGAA Predicted gene structure (within gDNA segment 12368 to 7318): Exon 1 10454 10446 ( 9 n); cDNA 259 267 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7958 ( 285 n); cDNA 268 552 ( 285 n); score: 0.888 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E351727- 0.888 294 0.529 C PGS_C08HBa0060C12.1-_SGN-E351727- (10454 10446,8242 7958) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 267 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 267 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 267 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 267 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 267 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 267 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 267 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 267 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 267 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 267 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 267 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 267 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 267 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 267 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 267 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 267 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 267 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 267 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 267 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 267 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 267 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 267 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 267 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 267 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 267 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 267 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 267 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 267 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 267 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 267 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 267 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 267 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 267 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 267 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 267 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 267 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 275 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 335 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 395 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 455 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 515 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGT 7958 |||||||||| ||||||||| |||||||||| ||||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT 552 hqPGS_C08HBa0060C12.1-_SGN-E351727- (8242 7958) ******************************************************************************** EST sequence 30 -strand 562 n (File: SGN-E352335-) 1 TTTTTTTTTT ATATAAACTC CACAAATATA TTTCATTTAT CACTCATGAT TAAAATGGAA 61 TCATACANCA AAAGAAAACC AACNCTATTG CCTTCCATCT AACCAATCAC ATATAGTAAC 121 TCCTTTGAAA ATAAACAAAT ATATAAGCAT ACAAAACCCC AAACACACAC ACACACACAT 181 TCAAACAAAA AGAAACAAAA TNCCCTATAT GAAAGTGGAT TTTTTTTTTT TTTTTTGCAA 241 AATGGAGAAA TTTGTCTATA GCATAATAAA TTAACATTGG AAGTCCTTAG GGACATATTT 301 GCCACAGTTG TTGAGTAACA AGCTTAGTGA AAGTGGAACA TTTAGGTTAA TTCCCAATAG 361 ATTAGCTTTA AGGGCAGTGC AAAGGCAAAC AGCAGCATCA AGATCAGCAA GTCCATGAAT 421 TAAAGAGCAA CATTTAGTCT TGGCTGGGCT ACTTCCAATA ACAAGGTGCA CTAAGTCATT 481 TAGCAAATTG GCACAAGCAT TTAGCTTTAG TGTGTCCTTT GGGCACTTTC CCTTTGATGA 541 TGGGGTGGAG GGGGTGGAAG GG Predicted gene structure (within gDNA segment 12398 to 7288): Exon 1 10454 10446 ( 9 n); cDNA 262 270 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7958 ( 285 n); cDNA 271 555 ( 285 n); score: 0.888 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E352335- 0.888 294 0.523 C PGS_C08HBa0060C12.1-_SGN-E352335- (10454 10446,8242 7958) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 270 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 270 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 270 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 270 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 270 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 270 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 270 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 270 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 270 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 270 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 270 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 270 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 270 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 270 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 270 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 270 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 270 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 270 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 270 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 270 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 270 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 270 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 270 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 270 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 270 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 270 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 270 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 270 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 270 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 270 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 270 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 270 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 270 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 270 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 270 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 270 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 278 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 338 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 398 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 458 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 518 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGT 7958 |||||||||| ||||||||| |||||||||| ||||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT 555 hqPGS_C08HBa0060C12.1-_SGN-E352335- (8242 7958) ******************************************************************************** EST sequence 122 -strand 566 n (File: SGN-E351524-) 1 TTTTTTTTTT TTTTTTTTTA AACTCCACAA ATATATTTCA TTTATCACTC ATGATTAAAA 61 TGGAATCATA CAACAAAAGA AAACCAACAC TATTGCCTTC CATCTAACCA ATCACATATA 121 GTAACTCCTT TGAAAATAAA CAAATATATA AGCATACAAA ACACCAAACA CACACACACA 181 CACACTCAAA CAAAAAGAAA CAAAATACAC TATATGAAAG TGGATTTTTT TTTTTTTTTT 241 TGCAAAATGG AGAAATTTGT CTATAGCATA ATAAATTAAC ATTGGAAGTC CTTAGGGACA 301 TATTTGCCAC AGTTGTTGAG TAACAAGCTT AGTGAAAGTG GAACATTTAG GTTAATTCCC 361 AATAGATTAG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG CATCAAGATC AGCAAGTCCA 421 TGAATTAAAG AGCAACATTT AGTCTTGGCT GGGCTACTTC CAATAACAAG GTGCACTAAG 481 TCATTTAGCA AATTGGCACA AGCATTTAGC TTTAGTGTGT CCTTTGGGCA CTTTCCCTTT 541 GATGATGGGG TGGAGGGGGT GGAAGG Predicted gene structure (within gDNA segment 12448 to 7298): Exon 1 10454 10446 ( 9 n); cDNA 267 275 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7958 ( 285 n); cDNA 276 560 ( 285 n); score: 0.888 PPA cDNA 19 1 MATCH C08HBa0060C12.1- SGN-E351524- 0.888 294 0.519 C PGS_C08HBa0060C12.1-_SGN-E351524- (10454 10446,8242 7958) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 275 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 275 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 275 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 275 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 275 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 275 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 275 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 275 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 275 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 275 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 275 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 275 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 275 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 275 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 275 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 275 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 275 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 275 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 275 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 275 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 275 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 275 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 275 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 275 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 275 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 275 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 275 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 275 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 275 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 275 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 275 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 275 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 275 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 275 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 275 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 275 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 283 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 343 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 403 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 463 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 523 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGT 7958 |||||||||| ||||||||| |||||||||| ||||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT 560 hqPGS_C08HBa0060C12.1-_SGN-E351524- (8242 7958) ******************************************************************************** EST sequence 174 -strand 539 n (File: SGN-E354313-) 1 AAATATATTT CATTTATCAC TCATGATTAA AATGGATTCA TACAACAAAA GAAAACCAAC 61 NCTATTGCCT TCCATCTAAC CAATCACATA TAGTAACTCC TTTGAAAATA AACAAATATA 121 TAAGCATACA AAACACCAAA CACACACACA CACACATTCA AACAAAAAGA AACAAAATAC 181 ACTATATGAA AGTGGATTTT TTTTTTTTTT TTTGCAAAAT GGAGAAATTT GTCTATAGCA 241 TAATAAATTA ACATTGGAAG TCCTTAGGGA CATATTTGCC ACAGTTGTTG AGTAACAAGC 301 TTAGTGAAAG TGGAACATTT AGGTTAATTC CCAATAGATT AGCTTTAAGG GCAGTGCAAA 361 GGCAAACAGC AGCATCAAGA TCAGCAAGTC CATGAATTAA AGAGCAACAT TTAGTCTTGG 421 CTGGGCTACT TCCAATAACA AGGTGCACTA AGTCATTTAG CAAATTGGCA CAAGCATTTA 481 GCTTTAGTGT GTCCTTTGGG CACTTTCCCT TTGATGATGG GGTGGAGGGG GTGGAAGGG Predicted gene structure (within gDNA segment 12168 to 7288): Exon 1 10454 10446 ( 9 n); cDNA 239 247 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7958 ( 285 n); cDNA 248 532 ( 285 n); score: 0.888 MATCH C08HBa0060C12.1- SGN-E354313- 0.888 294 0.545 C PGS_C08HBa0060C12.1-_SGN-E354313- (10454 10446,8242 7958) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 247 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 247 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 247 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 247 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 247 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 247 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 247 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 247 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 247 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 247 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 247 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 247 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 247 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 247 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 247 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 247 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 247 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 247 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 247 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 247 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 247 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 247 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 247 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 247 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 247 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 247 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 247 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 247 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 247 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 247 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 247 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 247 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 247 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 247 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 247 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 247 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 255 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 315 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 375 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 435 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 495 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGT 7958 |||||||||| ||||||||| |||||||||| ||||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT 532 hqPGS_C08HBa0060C12.1-_SGN-E354313- (8242 7958) ******************************************************************************** EST sequence 265 -strand 560 n (File: SGN-E355403-) 1 TTTTTTTTTT TAACCTCCAC AAATATATTC ATTTATCACT CATGATTAAA ATGGAATCAT 61 ACAACAAAAG AAACCANNCN CTATTGCCTT CCATCTAACC AATCACATAT AGTAACTCCT 121 TTGAAAATAA ACAAATATAT AAGCATACAA AACACCAAAC ACACACACAC ACACACTCAA 181 ACAAAAAGAA ACAAAATACC CTATATGAAA GTGGATTTTT TTTTTTTTTT TTGCAAAATG 241 GAGAAATTTG TCTATAGCAT AATAAATTAA CATTGGAAGT CCTTAGGGAC ATATTTGCCA 301 CAGTTGTTGA GTAACAAGCT TAGTGAAAGT GGAACATTTA GGTTAATTCC CAATAGATTA 361 GCTTTAAGGG CAGTGCAAAG GCAAACAGCA GCATCAAGAT CAGCAAGTCC ATGAATTAAA 421 GAGCAACATT TAGTCTTGGC TGGGCTACTT CCAATAACAA GGTGCACTAA GTCATTTAGC 481 AAATTGGCAC AAGCATTTAG CTTTAGTGTG TCCTTTGGGC ACTTTCCCTT TGATGATGGG 541 GTGGAGGGGG TGGAAGGGGT Predicted gene structure (within gDNA segment 12358 to 7268): Exon 1 10454 10446 ( 9 n); cDNA 258 266 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7958 ( 285 n); cDNA 267 551 ( 285 n); score: 0.888 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E355403- 0.888 294 0.525 C PGS_C08HBa0060C12.1-_SGN-E355403- (10454 10446,8242 7958) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 266 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 266 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 266 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 266 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 266 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 266 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 266 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 266 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 266 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 266 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 266 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 266 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 266 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 266 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 266 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 266 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 266 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 266 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 266 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 266 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 266 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 266 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 266 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 266 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 266 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 266 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 266 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 266 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 266 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 266 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 266 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 266 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 266 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 266 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 266 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 266 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 274 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 334 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 394 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 454 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 514 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGT 7958 |||||||||| ||||||||| |||||||||| ||||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT 551 hqPGS_C08HBa0060C12.1-_SGN-E355403- (8242 7958) ******************************************************************************** EST sequence 268 -strand 563 n (File: SGN-E355433-) 1 TTTTTTTTTT TAAACTCCAC AAATATATTT CATTTATCAC TCATGATTAA AAATGGAATC 61 ATACAACAAA AGAAAACCAA CACTATTGCC TTCCATCTAA CCAATCACAT ATAGTAACTC 121 CTTTGAAAAT AAACAAATAT ATAAGCATAC AAAACACCAA ACACACACAC ACACACACTC 181 AAACAAAAAG AAACAAAATA CACTATATGA AAGTGGATTT TTTTTTTTTT TTTTGCAAAA 241 TGGAGAAATT TGTCTATAGC ATAATAAATT AACATTGGAA GTCCTTAGGG ACATATTTGC 301 CACAGTTGTT GAGTAACAAG CTTAGTGAAA GTGGAACATT TAGGTTAATT CCCAATAGAT 361 TAGCTTTAAG GGCAGTGCAA AGGCAAACAG CAGCATCAAG ATCAGCAAGT CCATGAATTA 421 AAGAGCAACA TTTAGTCTTG GCTGGGCTAC TTCCAATAAC AAGGTGCACT AAGTCATTTA 481 GCAAATTGGC ACAAGCATTT AGCTTTAGTG TGTCCTTTGG GCACTTTCCC TTTGATGATG 541 GGGTGGAGGG GGTGGAAGGG GTG Predicted gene structure (within gDNA segment 12378 to 7258): Exon 1 10454 10446 ( 9 n); cDNA 260 268 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7958 ( 285 n); cDNA 269 553 ( 285 n); score: 0.888 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E355433- 0.888 294 0.522 C PGS_C08HBa0060C12.1-_SGN-E355433- (10454 10446,8242 7958) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 268 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 268 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 268 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 268 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 268 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 268 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 268 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 268 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 268 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 268 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 268 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 268 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 268 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 268 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 268 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 268 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 268 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 268 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 268 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 268 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 268 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 268 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 268 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 268 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 268 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 268 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 268 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 268 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 268 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 268 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 268 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 268 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 268 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 268 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 268 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 268 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 276 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 336 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 396 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 456 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 516 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGGGT 7958 |||||||||| ||||||||| |||||||||| ||||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGGGT 553 hqPGS_C08HBa0060C12.1-_SGN-E355433- (8242 7958) ******************************************************************************** EST sequence 278 -strand 515 n (File: SGN-E349814-) 1 CACATATAGT AACTCCTTTG AAAATAACAA AATATATAGG CATCCAAAAC ACCAAACACA 61 CACACACACA CATTCAAACA AAAAGAAACA AAATACNCTA TATGAAAGTG GATTTTTTTT 121 TTTTTTTTTG CAAAATGGAG AAATTTGTCT ATAGCATAAT AAATTAACAT TGGAAGTCCT 181 TAGGGACATA TTTGCCACAG TTGTTGAGTA ACAAGCTTAG TGAAAGTGGA ACATTTAGGT 241 TAATTCCCAA TAGATTAGCT TTAAGGGCAG TGCAAAGGCA AACAGCAGCA TCAAGATCAG 301 CAAGTCCATG AATTAAAGAG CAACATTTAG TCTTGGCTGG GCTACTTCCA ATAACAAGGT 361 GCACTAAGTC ATTTAGCAAA TTGGCACAAG CATTTAGCTT TAGTGTGTCC TTTGGGCACT 421 TTCCCTTTGA TGATGGGGTG GAGGGGGTGG AAGGGGTGGA GGGGGTAGGG GTAGGGTGGG 481 GTTTGGGGTG GTGTTTGTGG TGTGGGGGTG GTGGA Predicted gene structure (within gDNA segment 11928 to 6688): Exon 1 10454 10446 ( 9 n); cDNA 155 163 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7960 ( 283 n); cDNA 164 446 ( 283 n); score: 0.887 MATCH C08HBa0060C12.1- SGN-E349814- 0.887 292 0.567 C PGS_C08HBa0060C12.1-_SGN-E349814- (10454 10446,8242 7960) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 163 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 163 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 163 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 163 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 163 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 163 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 163 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 163 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 163 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 163 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 163 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 163 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 163 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 163 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 163 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 163 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 163 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 163 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 163 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 163 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 163 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 163 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 163 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 163 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 163 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 163 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 163 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 163 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 163 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 163 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 163 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 163 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 163 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 163 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 163 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 163 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 171 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 231 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 291 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 351 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 411 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGG 7960 |||||||||| ||||||||| |||||||||| ||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGG 446 hqPGS_C08HBa0060C12.1-_SGN-E349814- (8242 7960) ******************************************************************************** EST sequence 279 -strand 618 n (File: SGN-E349712-) 1 TTTTTATATA ACTTCCACCA AATATATTTC ATTTATCACT CATGATAAAA ATGGAATCAT 61 CCAACAAAAG AAACCCAACA CTATTGCCTT CCATCTAACC AATCACATAT AGTAACTCCT 121 TTGAAAATAA ACAAATATAT AAGCATACAA AACACCAAAC ACACACACAC ACACATTCAA 181 ACAAAAAGAA ACAAAATACA CTATATGAAA GTGGATTTTT TTTTTTTTTT TTGCAAAATG 241 GAGAAATTTG TCTATAGCAT AATAAATTAA CATTGGAAGT CCTTAGGGAC ATATTTGCCA 301 CAGTTGTTGA GTAACAAGCT TAGTGAAAGT GGAACATTTA GGTTAATTCC CAATAGATTA 361 GCTTTAAGGG CAGTGCAAAG GCAAACAGCA GCATCAAGAT CAGCAAGTCC ATGAATTAAA 421 GAGCAACATT TAGTCTTGGC TGGGCTACTT CCAATAACAA GGTGCACTAA GTCATTTAGC 481 AAATTGGCAC AAGCATTTAG CTTTAGTGTG TCCTTTGGGC ACTTTCCCTT TGATGATGGG 541 GTGGAGGGGG TGGAAGGGGT GGAGGGGGTA GGGGTAGGGT GGGGTTTGGG GTGGTGTTTG 601 TGGTGTGGGG GTGGTGGA Predicted gene structure (within gDNA segment 12358 to 6688): Exon 1 10454 10446 ( 9 n); cDNA 258 266 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 8242 7960 ( 283 n); cDNA 267 549 ( 283 n); score: 0.887 MATCH C08HBa0060C12.1- SGN-E349712- 0.887 292 0.472 C PGS_C08HBa0060C12.1-_SGN-E349712- (10454 10446,8242 7960) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 266 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 266 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 266 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 266 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 266 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 266 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 266 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 266 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 266 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 266 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 266 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 266 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 266 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 266 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 266 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 266 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 266 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 266 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 266 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 266 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 266 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 266 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 266 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 266 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 266 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 266 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 266 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 266 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 266 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 266 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 266 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 266 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 266 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 266 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 266 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 266 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 274 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| ||| || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCCTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 334 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 394 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 454 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 514 TTGGGCACTT ACCCTTTGAT GATGGGGTGG AGGGG 7960 |||||||||| ||||||||| |||||||||| ||||| TTGGGCACTT TCCCTTTGAT GATGGGGTGG AGGGG 549 hqPGS_C08HBa0060C12.1-_SGN-E349712- (8242 7960) ******************************************************************************** EST sequence 240 -strand 452 n (File: SGN-E356988-) 1 CATAAACTTN AAAAGATAGA CATTTATTTC ATGAAAAGAA GGCAATAACT ATAGCCTCCC 61 TTGTAAACAA ACTAGAATAC AATAAGGAAG TATACTTCCT TTTGAAAATA AGCCCACAAA 121 ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT TGAAAATTTG GCTTATTTGC 181 ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG 241 GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG 301 CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC 361 CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT 421 CCTTTGGGCA CTTACCCTTT GATGATGGGG TG Predicted gene structure (within gDNA segment 9117 to 7366): Exon 1 8417 7966 ( 452 n); cDNA 1 452 ( 452 n); score: 0.998 MATCH C08HBa0060C12.1- SGN-E356988- 0.998 452 1.000 C PGS_C08HBa0060C12.1-_SGN-E356988- (8417 7966) Alignment (genomic DNA sequence = upper lines): CATAAACTTT AAAAGATAGA CATTTATTTC ATGAAAAGAA GGCAATAACT ATAGCCTCCC 8358 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAAACTTN AAAAGATAGA CATTTATTTC ATGAAAAGAA GGCAATAACT ATAGCCTCCC 60 TTGTAAACAA ACTAGAATAC AATAAGGAAG TATACTTCCT TTTGAAAATA AGCCCACAAA 8298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAAACAA ACTAGAATAC AATAAGGAAG TATACTTCCT TTTGAAAATA AGCCCACAAA 120 ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT TGAAAATTTG GCTTATTTGC 8238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCAAATA ATACACTGAA AGAAATTGAA CTATATGAAT TGAAAATTTG GCTTATTTGC 180 ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG 8178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGAAGTT CTTGGGTGCA TATTTGCCAC AATTGTTAAG CAACAAGCTA AGTGAAAGTG 240 GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG 8118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATATTTAG ATTAATTCCC AACACATTGG CTTTAAGGGC AGTGCAAAGG CAAACAGCAG 300 CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC 8058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAAGATC AACAAGTCCT TCAATTAAAG AGCAACACTG AGTCTTGGCT GGACTACTTC 360 CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT 7998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAACAAG GTGCAATAAA TCACCCAATA AATTGGCACA AGCATTTAGT TTTAGTGTGT 420 CCTTTGGGCA CTTACCCTTT GATGATGGGG TG 7966 |||||||||| |||||||||| |||||||||| || CCTTTGGGCA CTTACCCTTT GATGATGGGG TG 452 hqPGS_C08HBa0060C12.1-_SGN-E356988- (8417 7966) ******************************************************************************** EST sequence 28 -strand 538 n (File: SGN-E352458-) 1 TTTTTTTTTT ATATAAACTC CACAAATATA TTTCATTTAT CACTCATGAT TAAAATGGAA 61 TCATACAACA AAAGAAACCC AACATTATTG CCTTCCATCT AACCAATCAC ATATAGTACC 121 TCCTTGGAAA ATAAACAAAT ATATAAGCAT ACAAAACACC AAACACACAC ACTCACACAT 181 TCAAACAAAA AGAAACAAAA TCCNCTATAT GAAAGTGGAT TTTTTTTTTT TTTTTTTGCA 241 AAATGGAGAA ATTTGTCTAT AGCATAATAA ATTAACATTG GAAGTCTTTA GGGACATATT 301 TGCCACAGTT GTTGAGTAAC AAGCTTAGTG AAAGTGGAAC ATTTAGGTTA ATTCCCAATA 361 GATTAGCTTT AAGGGCAGTG CAAAGGCAAA CAGCAGCATC AAGATCAGCA AGTCCATGAA 421 TTAAAGAGCA ACATTTAGTC TTGGCTGGGC TACTTCCAAT AACAAGGTGC ACTAAGTCAT 481 TTAGCAAATT GGCACAAGCA TTTAGCTTTA GTGTGTCCTT TGGGCACTTT CCCTTTGA Predicted gene structure (within gDNA segment 12408 to 7295): Exon 1 10454 10446 ( 9 n); cDNA 263 271 ( 9 n); score: 0.778 Intron 1 10445 8243 (2203 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80) Exon 2 8242 7976 ( 267 n); cDNA 272 538 ( 267 n); score: 0.876 PPA cDNA 10 1 MATCH C08HBa0060C12.1- SGN-E352458- 0.876 276 0.513 C PGS_C08HBa0060C12.1-_SGN-E352458- (10454 10446,8242 7976) Alignment (genomic DNA sequence = upper lines): CATAAAAGAG TGGTGAGCGA GATGGGAGAG AGGTGAGGGA GGCTAATGAG ATTCGTCTAT 10395 ||||| | | CATAATAAA. .......... .......... .......... .......... .......... 271 GTATCCCAAA TACATGCAAA TCCACTTGAA TACAATGTAT CTAAAATAAA CTACACCTAA 10335 .......... .......... .......... .......... .......... .......... 271 TTTGCCCCAT ATACTTCAAG GTACATGTAT CTAGACATAG CTAGACGCAC CAATATCTGA 10275 .......... .......... .......... .......... .......... .......... 271 TAAGATTTGT AATATTGTAA AGAAAAGTAT ACATCTAAGT AATAAACTTG TAAACTAGTG 10215 .......... .......... .......... .......... .......... .......... 271 AAATTACTAT AAGTTTCCTA TAAAATTCTA CTAGTGTGAA TGGTTGAGAA TATGGGCCAA 10155 .......... .......... .......... .......... .......... .......... 271 ATAAATATTG GATGTGGTGT GGATAATTTA TGTAGGCTCA ATTCAAGATA CAATACTATA 10095 .......... .......... .......... .......... .......... .......... 271 GAGGCCCAAA ATTGCTAATG GGGTAGGAAC TTGTGATTCT CTTTACCATT CAGGCAAAAT 10035 .......... .......... .......... .......... .......... .......... 271 CTTATATTTT CCGGTAAAAA ATAGTTGGTG TAGTTCATCA AAAGAGTAAT ATCACGAGCT 9975 .......... .......... .......... .......... .......... .......... 271 CAATTACTAC GCATTCCATG ATATGTGTCA AAAATTGTCA TGTCAGCGAA TTGCGTCTAA 9915 .......... .......... .......... .......... .......... .......... 271 TCAACACACT ATAAGTAAGT TTTGGTGCAA AATTAAAATA GACTGTAGAA CTGTAGTAAC 9855 .......... .......... .......... .......... .......... .......... 271 GACATACAGA ATATGAACAA CTCGATCCTA GAAAATATAA ACTTACAATA GAGTACATTA 9795 .......... .......... .......... .......... .......... .......... 271 TTATTAGTAG TATTAGTATT AGTATTATTA AATAGTATAG AAAATGGCTA CTGTGATAAT 9735 .......... .......... .......... .......... .......... .......... 271 TTTGTCCGTG GAGATTTATT TATTTATAAT TTTTGTGTTG AGATATATAA GTAGGGTTGT 9675 .......... .......... .......... .......... .......... .......... 271 TTATAAATGC ACTTAATTTA TATAGGGAGA ATTTATGCAT CGTTAATTAA TAAACAATAC 9615 .......... .......... .......... .......... .......... .......... 271 ATAGTTCACC TAAGCAATTT TTGAGAGAGA GATTAATACT ATTATAGAAT AATTTGTTTC 9555 .......... .......... .......... .......... .......... .......... 271 TGCCTTCTCG AAAACAAAAT ACAATCACTA TAAGACAATT GAATATGTAT ATTGATTTAA 9495 .......... .......... .......... .......... .......... .......... 271 TTTAGGCGTA TGTAGGATTT TGACACAATG GGTCACCATT TATGAATTTC CAATACAAAC 9435 .......... .......... .......... .......... .......... .......... 271 TTCAAAATTT TGAACGATTA AAGTTATATG TAAGGAAAAT GCACAAGTAC CTCTCAATCT 9375 .......... .......... .......... .......... .......... .......... 271 ATGTCCGAAA TTTAATATGC CAATTCTAGT ATATCAGATA TCAGCCACTA CAACTAAGAC 9315 .......... .......... .......... .......... .......... .......... 271 CAAATAACAA ACTACCGCTA GAAAATCATA TTTGAGAGAT AAAAAACATG TAGCATTCAT 9255 .......... .......... .......... .......... .......... .......... 271 CCCGGTATGA ACTTTTGGAG AACTTTTGGA GAATTTTAGC GGCTACTGAA ATTTTCACCT 9195 .......... .......... .......... .......... .......... .......... 271 TGTTGATAAG GGTTAGATTC CCCCTCTTGT TTCCCTTCTT TATTTTTAAC TCTCACTTTG 9135 .......... .......... .......... .......... .......... .......... 271 TTGGGATGGT TTTCACATAT CGTATTATAT TGTATTATAT TAACTTGATG AATACAATCT 9075 .......... .......... .......... .......... .......... .......... 271 TTGGATATAT TGTATCGTTT TTCATCGCTA CATAACATCA TACACGAGCA ATTTTGAAGG 9015 .......... .......... .......... .......... .......... .......... 271 ACAAACTTAT AAGAAAAGTA AGGTATTTGG TAGAGCTAAT ATAAAAAAGT ACAGTGAAAG 8955 .......... .......... .......... .......... .......... .......... 271 AATTAAATAG GATTATTATT TTAAAAAAGA AGAAGAAATA AGGTAACGAT GCAATCATCG 8895 .......... .......... .......... .......... .......... .......... 271 GTTGTTACAT AAGACTTTTC ATCCTTATGT AACAAGGAAT TTTATGATAT GATACGATAA 8835 .......... .......... .......... .......... .......... .......... 271 AAATTAAAAA CAATCAAAAC AAAACAAATA TTATATATAT ATTTAAACTA ACAATACAGT 8775 .......... .......... .......... .......... .......... .......... 271 ATAAACTTTT TTCATCACAT TAATAAAAAA ATTGATTTTT TAAATATTTT TATTTAAAGT 8715 .......... .......... .......... .......... .......... .......... 271 TTTCATTTTT AAAATATTGA GTTGATCTCA ATCCGATTTA ATTTAACTTC AAAATTAGGT 8655 .......... .......... .......... .......... .......... .......... 271 TAGGATATAT TCATTAAATT TTTTTTGATT CAATACATTT TTATGTGGTT AAGTCATTTT 8595 .......... .......... .......... .......... .......... .......... 271 AAAATGCATT AACCAATATA GTCAAGTAAA AGGTCAAACA AACAAATTGA AACGGAGAAA 8535 .......... .......... .......... .......... .......... .......... 271 GTATTATCAT ACGAAGATTC AAATTTTTGA TCCTAGTATA GTACTACAAT AGAACAGTAA 8475 .......... .......... .......... .......... .......... .......... 271 CATACATAAA AAGAAGAAAG TTAAGCCCAT CAATATTTAT AACATCAAAC ATTTTAACAT 8415 .......... .......... .......... .......... .......... .......... 271 AAACTTTAAA AGATAGACAT TTATTTCATG AAAAGAAGGC AATAACTATA GCCTCCCTTG 8355 .......... .......... .......... .......... .......... .......... 271 TAAACAAACT AGAATACAAT AAGGAAGTAT ACTTCCTTTT GAAAATAAGC CCACAAAACA 8295 .......... .......... .......... .......... .......... .......... 271 TCAAATAATA CACTGAAAGA AATTGAACTA TATGAATTGA AAATTTGGCT TATTTGCATT 8235 || |||| .......... .......... .......... .......... .......... ..TTAACATT 279 GGAAGTTCTT GGGTGCATAT TTGCCACAAT TGTTAAGCAA CAAGCTAAGT GAAAGTGGGA 8175 |||||| || || ||||| |||||||| | |||| || || |||||| ||| |||||||| | GGAAGTCTTT AGGGACATAT TTGCCACAGT TGTTGAGTAA CAAGCTTAGT GAAAGTGGAA 339 TATTTAGATT AATTCCCAAC ACATTGGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 8115 |||||| || ||||||||| | ||| |||| |||||||||| |||||||||| |||||||||| CATTTAGGTT AATTCCCAAT AGATTAGCTT TAAGGGCAGT GCAAAGGCAA ACAGCAGCAT 399 CAAGATCAAC AAGTCCTTCA ATTAAAGAGC AACACTGAGT CTTGGCTGGA CTACTTCCAA 8055 |||||||| | |||||| | | |||||||||| |||| | ||| ||||||||| |||||||||| CAAGATCAGC AAGTCCATGA ATTAAAGAGC AACATTTAGT CTTGGCTGGG CTACTTCCAA 459 CAACAAGGTG CAATAAATCA CCCAATAAAT TGGCACAAGC ATTTAGTTTT AGTGTGTCCT 7995 ||||||||| || ||| ||| | |||| |||||||||| |||||| ||| |||||||||| TAACAAGGTG CACTAAGTCA TTTAGCAAAT TGGCACAAGC ATTTAGCTTT AGTGTGTCCT 519 TTGGGCACTT ACCCTTTGA 7976 |||||||||| |||||||| TTGGGCACTT TCCCTTTGA 538 hqPGS_C08HBa0060C12.1-_SGN-E352458- (8242 7976) ******************************************************************************** EST sequence 169 -strand 392 n (File: SGN-E308938-) 1 TTTTTTTTTT TCAAAAGAAA CCATTTATTT CATGAAAATT GGATACAACA ATAATTAAAA 61 GGGGCAATTA CTAGCCTCCA TTCCAACCAA ATAGAGTAAA AAATACACTT CTTTTAAAAT 121 AAGCAACTAG TAGTACTACA AGCATACAAA TAACAAAATA CCAAACACAG AAAGAAACTA 181 ATTTTGTCTT AAGCACATTG GAAGTTCTTG GGTGCATATT TGCCACAATT GTTGAGCAAC 241 AAGCTAAGGG AAAGTGGAAC ATTTAGATTA ATTCCCAACA CATTGGCTTT AAGGGCAGTG 301 CAAAGGCAGA CAGCAGCATC AAGGTCAACA AGTCCTTCAA TTAAAGAGCA ACATTGAGTC 361 TTGGCTGGAC CTCGTGCCGA ATTCGGCACG AG Predicted gene structure (within gDNA segment 11398 to 7244): Exon 1 10455 10444 ( 12 n); cDNA 86 97 ( 12 n); score: 0.750 Intron 1 10443 9824 ( 620 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 9823 9786 ( 38 n); cDNA 98 135 ( 38 n); score: 0.632 Intron 2 9785 9338 ( 448 n); Pd: 0.000 (s: 0), Pa: 0.201 (s: 0.68) Exon 3 9337 9286 ( 52 n); cDNA 136 182 ( 47 n); score: 0.692 Intron 3 9285 8252 (1034 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.90) Exon 4 8251 8064 ( 188 n); cDNA 183 370 ( 188 n); score: 0.936 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E308938- 0.883 290 0.740 C PGS_C08HBa0060C12.1-_SGN-E308938- (10455 10444,9823 9786,9337 9286,8251 8064) Alignment (genomic DNA sequence = upper lines): ACATAAAAGA GTGGTGAGCG AGATGGGAGA GAGGTGAGGG AGGCTAATGA GATTCGTCTA 10396 || || ||| || ACCAAATAGA GT........ .......... .......... .......... .......... 97 TGTATCCCAA ATACATGCAA ATCCACTTGA ATACAATGTA TCTAAAATAA ACTACACCTA 10336 .......... .......... .......... .......... .......... .......... 97 ATTTGCCCCA TATACTTCAA GGTACATGTA TCTAGACATA GCTAGACGCA CCAATATCTG 10276 .......... .......... .......... .......... .......... .......... 97 ATAAGATTTG TAATATTGTA AAGAAAAGTA TACATCTAAG TAATAAACTT GTAAACTAGT 10216 .......... .......... .......... .......... .......... .......... 97 GAAATTACTA TAAGTTTCCT ATAAAATTCT ACTAGTGTGA ATGGTTGAGA ATATGGGCCA 10156 .......... .......... .......... .......... .......... .......... 97 AATAAATATT GGATGTGGTG TGGATAATTT ATGTAGGCTC AATTCAAGAT ACAATACTAT 10096 .......... .......... .......... .......... .......... .......... 97 AGAGGCCCAA AATTGCTAAT GGGGTAGGAA CTTGTGATTC TCTTTACCAT TCAGGCAAAA 10036 .......... .......... .......... .......... .......... .......... 97 TCTTATATTT TCCGGTAAAA AATAGTTGGT GTAGTTCATC AAAAGAGTAA TATCACGAGC 9976 .......... .......... .......... .......... .......... .......... 97 TCAATTACTA CGCATTCCAT GATATGTGTC AAAAATTGTC ATGTCAGCGA ATTGCGTCTA 9916 .......... .......... .......... .......... .......... .......... 97 ATCAACACAC TATAAGTAAG TTTTGGTGCA AAATTAAAAT AGACTGTAGA ACTGTAGTAA 9856 .......... .......... .......... .......... .......... .......... 97 CGACATACAG AATATGAACA ACTCGATCCT AGAAAATATA AACTTACAAT AGAGTACATT 9796 |||| ||| |||| | | | || .......... .......... .......... ..AAAAAATA CACTTCTTTT AAAATAAGCA 125 ATTATTAGTA GTATTAGTAT TAGTATTATT AAATAGTATA GAAAATGGCT ACTGTGATAA 9736 | || ||||| ACTAGTAGTA .......... .......... .......... .......... .......... 135 TTTTGTCCGT GGAGATTTAT TTATTTATAA TTTTTGTGTT GAGATATATA AGTAGGGTTG 9676 .......... .......... .......... .......... .......... .......... 135 TTTATAAATG CACTTAATTT ATATAGGGAG AATTTATGCA TCGTTAATTA ATAAACAATA 9616 .......... .......... .......... .......... .......... .......... 135 CATAGTTCAC CTAAGCAATT TTTGAGAGAG AGATTAATAC TATTATAGAA TAATTTGTTT 9556 .......... .......... .......... .......... .......... .......... 135 CTGCCTTCTC GAAAACAAAA TACAATCACT ATAAGACAAT TGAATATGTA TATTGATTTA 9496 .......... .......... .......... .......... .......... .......... 135 ATTTAGGCGT ATGTAGGATT TTGACACAAT GGGTCACCAT TTATGAATTT CCAATACAAA 9436 .......... .......... .......... .......... .......... .......... 135 CTTCAAAATT TTGAACGATT AAAGTTATAT GTAAGGAAAA TGCACAAGTA CCTCTCAATC 9376 .......... .......... .......... .......... .......... .......... 135 TATGTCCGAA ATTTAATATG CCAATTCTAG TATATCAGAT ATCAGCCACT ACAACTAAGA 9316 | | || || | |||| | | | .......... .......... .......... ........CT A-CAAGCA-T ACAAAT-A-A 153 CCAAATAACA AACTACCGCT AGAAAATCAT ATTTGAGAGA TAAAAAACAT GTAGCATTCA 9256 | ||||| || ||| || | ||||| | || CAAAATACCA AAC-ACAGAA AGAAACTAAT .......... .......... .......... 182 TCCCGGTATG AACTTTTGGA GAACTTTTGG AGAATTTTAG CGGCTACTGA AATTTTCACC 9196 .......... .......... .......... .......... .......... .......... 182 TTGTTGATAA GGGTTAGATT CCCCCTCTTG TTTCCCTTCT TTATTTTTAA CTCTCACTTT 9136 .......... .......... .......... .......... .......... .......... 182 GTTGGGATGG TTTTCACATA TCGTATTATA TTGTATTATA TTAACTTGAT GAATACAATC 9076 .......... .......... .......... .......... .......... .......... 182 TTTGGATATA TTGTATCGTT TTTCATCGCT ACATAACATC ATACACGAGC AATTTTGAAG 9016 .......... .......... .......... .......... .......... .......... 182 GACAAACTTA TAAGAAAAGT AAGGTATTTG GTAGAGCTAA TATAAAAAAG TACAGTGAAA 8956 .......... .......... .......... .......... .......... .......... 182 GAATTAAATA GGATTATTAT TTTAAAAAAG AAGAAGAAAT AAGGTAACGA TGCAATCATC 8896 .......... .......... .......... .......... .......... .......... 182 GGTTGTTACA TAAGACTTTT CATCCTTATG TAACAAGGAA TTTTATGATA TGATACGATA 8836 .......... .......... .......... .......... .......... .......... 182 AAAATTAAAA ACAATCAAAA CAAAACAAAT ATTATATATA TATTTAAACT AACAATACAG 8776 .......... .......... .......... .......... .......... .......... 182 TATAAACTTT TTTCATCACA TTAATAAAAA AATTGATTTT TTAAATATTT TTATTTAAAG 8716 .......... .......... .......... .......... .......... .......... 182 TTTTCATTTT TAAAATATTG AGTTGATCTC AATCCGATTT AATTTAACTT CAAAATTAGG 8656 .......... .......... .......... .......... .......... .......... 182 TTAGGATATA TTCATTAAAT TTTTTTTGAT TCAATACATT TTTATGTGGT TAAGTCATTT 8596 .......... .......... .......... .......... .......... .......... 182 TAAAATGCAT TAACCAATAT AGTCAAGTAA AAGGTCAAAC AAACAAATTG AAACGGAGAA 8536 .......... .......... .......... .......... .......... .......... 182 AGTATTATCA TACGAAGATT CAAATTTTTG ATCCTAGTAT AGTACTACAA TAGAACAGTA 8476 .......... .......... .......... .......... .......... .......... 182 ACATACATAA AAAGAAGAAA GTTAAGCCCA TCAATATTTA TAACATCAAA CATTTTAACA 8416 .......... .......... .......... .......... .......... .......... 182 TAAACTTTAA AAGATAGACA TTTATTTCAT GAAAAGAAGG CAATAACTAT AGCCTCCCTT 8356 .......... .......... .......... .......... .......... .......... 182 GTAAACAAAC TAGAATACAA TAAGGAAGTA TACTTCCTTT TGAAAATAAG CCCACAAAAC 8296 .......... .......... .......... .......... .......... .......... 182 ATCAAATAAT ACACTGAAAG AAATTGAACT ATATGAATTG AAAATTTGGC TTATTTGCAT 8236 |||| | ||| ||| .......... .......... .......... .......... ....TTTGTC TTAAGCACAT 198 TGGAAGTTCT TGGGTGCATA TTTGCCACAA TTGTTAAGCA ACAAGCTAAG TGAAAGTGGG 8176 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||| TGGAAGTTCT TGGGTGCATA TTTGCCACAA TTGTTGAGCA ACAAGCTAAG GGAAAGTGGA 258 ATATTTAGAT TAATTCCCAA CACATTGGCT TTAAGGGCAG TGCAAAGGCA AACAGCAGCA 8116 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACATTTAGAT TAATTCCCAA CACATTGGCT TTAAGGGCAG TGCAAAGGCA GACAGCAGCA 318 TCAAGATCAA CAAGTCCTTC AATTAAAGAG CAACACTGAG TCTTGGCTGG AC 8064 ||||| |||| |||||||||| |||||||||| ||||| |||| |||||||||| || TCAAGGTCAA CAAGTCCTTC AATTAAAGAG CAACATTGAG TCTTGGCTGG AC 370 hqPGS_C08HBa0060C12.1-_SGN-E308938- (8251 8064) ******************************************************************************** EST sequence 226 -strand 253 n (File: SGN-E311342-) 1 TAAAAGATGA CATTTATTTC ATGAAAAGAA GGCAATAACT ATAGCCTCCC TTGTAAACAA 61 ACTAGAATAC AATAAGGAAG TATACTTCCT TTTGAAAATA AGCCCACAAA ACATCAAATA 121 ATACACTGAA AGAAATTGAA CTATATGAAT TGAAAATTTG GCTTATTTGC ATTGGAAGTT 181 CTTGGGTGCA TATTTGCCAC AATTGTTAAG CACCAAGCTA AGTGAAAGTG GGATATTTAG 241 ATTAATTCCC AAC Predicted gene structure (within gDNA segment 9089 to 7555): Exon 1 8408 8155 ( 254 n); cDNA 1 253 ( 253 n); score: 0.992 MATCH C08HBa0060C12.1- SGN-E311342- 0.992 254 1.004 C PGS_C08HBa0060C12.1-_SGN-E311342- (8408 8155) Alignment (genomic DNA sequence = upper lines): TAAAAGATAG ACATTTATTT CATGAAAAGA AGGCAATAAC TATAGCCTCC CTTGTAAACA 8349 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAGAT-G ACATTTATTT CATGAAAAGA AGGCAATAAC TATAGCCTCC CTTGTAAACA 59 AACTAGAATA CAATAAGGAA GTATACTTCC TTTTGAAAAT AAGCCCACAA AACATCAAAT 8289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAGAATA CAATAAGGAA GTATACTTCC TTTTGAAAAT AAGCCCACAA AACATCAAAT 119 AATACACTGA AAGAAATTGA ACTATATGAA TTGAAAATTT GGCTTATTTG CATTGGAAGT 8229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACACTGA AAGAAATTGA ACTATATGAA TTGAAAATTT GGCTTATTTG CATTGGAAGT 179 TCTTGGGTGC ATATTTGCCA CAATTGTTAA GCAACAAGCT AAGTGAAAGT GGGATATTTA 8169 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TCTTGGGTGC ATATTTGCCA CAATTGTTAA GCACCAAGCT AAGTGAAAGT GGGATATTTA 239 GATTAATTCC CAAC 8155 |||||||||| |||| GATTAATTCC CAAC 253 hqPGS_C08HBa0060C12.1-_SGN-E311342- (8408 8155) ******************************************************************************** EST sequence 409 +strand 202 n (File: SGN-E390858+) 1 TTTTTTTTTT TTTTTTTCTT TATTTTAAAA GATAGACATT TATTTCATGA AAAGAACCCT 61 TATAAAATAC CCTCCCTTGT AAACAAACTA GAATACAATA AGGAAGTATA CTTCCGGTTT 121 GAAAATAAGC CCCCCAAACA TCAAATAATA CACTGAAAGA AATTGAACTA AATGAATTGA 181 AAATTTGGCT AATTTGCATT GG Predicted gene structure (within gDNA segment 9240 to 7515): Exon 1 8410 8233 ( 178 n); cDNA 24 202 ( 179 n); score: 0.907 PPA cDNA 17 1 MATCH C08HBa0060C12.1- SGN-E390858+ 0.907 178 0.881 C PGS_C08HBa0060C12.1-_SGN-E390858+ (8410 8233) Alignment (genomic DNA sequence = upper lines): TTTAAAAGAT AGACATTTAT TTCATGAAAA GAAGGCAATA ACTATAGCCT CCCTTGTAAA 8351 |||||||||| |||||||||| |||||||||| ||| | | ||| ||| |||||||||| TTTAAAAGAT AGACATTTAT TTCATGAAAA GAACCCTTAT AAAATACCCT CCCTTGTAAA 83 CAAACTAGAA TACAATAAGG AAGTATACTT CC-TTTTGAA AATAAGCCCA CAAAACATCA 8292 |||||||||| |||||||||| |||||||||| || |||||| ||||||||| | |||||||| CAAACTAGAA TACAATAAGG AAGTATACTT CCGGTTTGAA AATAAGCCCC CCAAACATCA 143 AATAATACAC TGAAAGAAAT TGAACTATAT GAATTGAAAA TTTGGCTTAT TTGCATTGG 8233 |||||||||| |||||||||| ||||||| || |||||||||| ||||||| || ||||||||| AATAATACAC TGAAAGAAAT TGAACTAAAT GAATTGAAAA TTTGGCTAAT TTGCATTGG 202 hqPGS_C08HBa0060C12.1-_SGN-E390858+ (8410 8233) ******************************************************************************** EST sequence 353 +strand 742 n (File: SGN-E338962+) 1 AAGAAAAATA ACAATGGGGA ACCATAACCT TCACTTGCTA ATAGTACTCT TATCTCTCCA 61 ATGTTTTCTT GTTCACAACA CCATGGCTAA ATCAGCCATG GCCTCAAATC CAGCTGCCAT 121 TAAATTCATC AAAGTTTCAT GTAAAGCCAC ACTTTACCCT GTTTTATGTG TCCAATGCCT 181 CTCTGCTTTC GCCAACACAG TTAAACAGAG CGAGAAGCAA CTAGCTCATG CTGCTTTATC 241 AGTTAGTTTA AGCAAAGCAA AATCCACTAT CATATTCGTA TCGAAGTTAA ATAGAATGAG 301 AGGTCTAAAA CCAATAGAAA AACAAGCAGT CAAGGACTGT ATGGATACTA TGAGTGATAG 361 TGTCGATCAG ATAAACAAAT CAATTCCGGA ACTTGGACAT ACTGGTCAAT TTTCAAGCGG 421 ACAGGATTTC ATGTGGCATG TTAGTAATGT ACAGACTTGG GTAAGTGCTG CACTTACTGA 481 TGAAAGCACT TGTCTTGATG GATTTTCAGG GCCTGGTGTG AATGTAAATG TGAAAGCTGC 541 TTTAAGATTA AGAATACTTC ATGTTGCACA AGTTACTAGT AATGCACTTG CTTTGGTTAA 601 TCGATTNGCG GATCGACACC GGCCAAGTCC TTAATGTGNA CTGAGGCAGG AGCGTGAATT 661 TGAATTAGTC GATGAGGTTA CAAGTNNTGA TGTGTAAAGG TTACTTTTTT TTGGGAATTT 721 TACAAGCATG AAATGGGGCT TT Predicted gene structure (within gDNA segment 14037 to 11897): Exon 1 13437 12694 ( 744 n); cDNA 1 742 ( 742 n); score: 0.989 MATCH C08HBa0060C12.1- SGN-E338962+ 0.989 744 1.003 C PGS_C08HBa0060C12.1-_SGN-E338962+ (13437 12694) Alignment (genomic DNA sequence = upper lines): AAGAAAAATA ACAATGGGGA ACCATAACCT TCACTTGCTA ATAGTACTCT TATCTCTCCA 13378 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAAATA ACAATGGGGA ACCATAACCT TCACTTGCTA ATAGTACTCT TATCTCTCCA 60 ATGTTTTCTT GTTCACAACA CCATGGCTAA ATCAGCCATG GCCTCAAATC CAGCTGCCAT 13318 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTTTCTT GTTCACAACA CCATGGCTAA ATCAGCCATG GCCTCAAATC CAGCTGCCAT 120 TAAATTCATC AAAGTTTCAT GTAAAGCCAC ACTTTACCCT GTTTTATGTG TCCAATGCCT 13258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATTCATC AAAGTTTCAT GTAAAGCCAC ACTTTACCCT GTTTTATGTG TCCAATGCCT 180 CTCTGCTTTC GCCAACACAG TTAAACAGAG CGAGAAGCAA CTAGCTCATG CTGCTTTATC 13198 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGCTTTC GCCAACACAG TTAAACAGAG CGAGAAGCAA CTAGCTCATG CTGCTTTATC 240 AGTTAGTTTA AGCAAAGCAA AATCCACTAT CATATTCGTA TCGAAGTTAA ATAGAATGAG 13138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTAGTTTA AGCAAAGCAA AATCCACTAT CATATTCGTA TCGAAGTTAA ATAGAATGAG 300 AGGTCTAAAA CCAATAGAAA AACAAGCAGT CAAGGACTGT ATGGATACTA TGAGTGATAG 13078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCTAAAA CCAATAGAAA AACAAGCAGT CAAGGACTGT ATGGATACTA TGAGTGATAG 360 TGTCGATCAG ATAAACAAAT CAATTCCGGA ACTTGGACAT ACTGGTCAAT TTTCAAGCGG 13018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCGATCAG ATAAACAAAT CAATTCCGGA ACTTGGACAT ACTGGTCAAT TTTCAAGCGG 420 ACAGGATTTC ATGTGGCATG TTAGTAATGT ACAGACTTGG GTAAGTGCTG CACTTACTGA 12958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGATTTC ATGTGGCATG TTAGTAATGT ACAGACTTGG GTAAGTGCTG CACTTACTGA 480 TGAAAGCACT TGTCTTGATG GATTTTCAGG GCCTGGTGTG AATGTAAATG TGAAAGCTGC 12898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGCACT TGTCTTGATG GATTTTCAGG GCCTGGTGTG AATGTAAATG TGAAAGCTGC 540 TTTAAGATTA AGAATACTTC ATGTTGCACA AGTTACTAGT AATGCACTTG CTTTGGTTAA 12838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAGATTA AGAATACTTC ATGTTGCACA AGTTACTAGT AATGCACTTG CTTTGGTTAA 600 TCGATTTGCG GATCGACACC GGCCAAGTCC TTAATGTG-A CTGAGGCAAG GAGCGTGAAT 12779 |||||| ||| |||||||||| |||||||||| |||||||| | ||||||| || |||||||||| TCGATTNGCG GATCGACACC GGCCAAGTCC TTAATGTGNA CTGAGGC-AG GAGCGTGAAT 659 TTGAATTAGT CGATGAGGTT ACAAGTTTTG ATGTGTAAAG GTTACTTTTT TTTGGGAATT 12719 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TTGAATTAGT CGATGAGGTT ACAAGTNNTG ATGTGTAAAG GTTACTTTTT TTTGGGAATT 719 TTCACAAGCA TGAAATTGGG GCTTT 12694 || ||||||| ||||| |||| ||||| TT-ACAAGCA TGAAA-TGGG GCTTT 742 hqPGS_C08HBa0060C12.1-_SGN-E338962+ (13437 12694) ******************************************************************************** EST sequence 391 +strand 530 n (File: SGN-E297456+) 1 ATGGGGAACC ATAACCTTCA CTTGCTAATA GTACTCTGAT CTCTCCAATG TTTTCTTGTT 61 CACAACACCA TGGCTAAATC AGCCATGGCC TCAAATCCAG CTGCCATTAA ATTCATCAAA 121 GTTTCATGTA AAGCCACACT TTACCCTGTT TTATGTGTCC AATGCCTCTC TGCTTTCGCC 181 AACACAGTTA AACAGAGCGA GAAGCAACTA GCTCATGCTG CTTTATCAGT TAGTTTAAGC 241 AAAGCAAAAT CCACTATCAT ATTCGTATCG AAGTTAAATA GAATGAGAGG TCTAAAACCA 301 ATAGAAAAAC AAGCAGTCAA GGACTGTATG GATACTATGA GTGATAGTGT CGATCAGATA 361 AACAAATCAA TTCCGGAACT TGGACATACT GGTCAATTTT CAAGCGGACA GGATTTCATG 421 TGGCATGTTA GTAATGTACA GACTTGGGTA AGTGCTGCAC TTACTGATGA AAGCACTTGT 481 CTTGATGGAT TTTCAGGGCC TGGTGTGAAT GTAAATGTGA AAGCTGCTTT Predicted gene structure (within gDNA segment 14024 to 12285): Exon 1 13424 12895 ( 530 n); cDNA 1 530 ( 530 n); score: 0.998 MATCH C08HBa0060C12.1- SGN-E297456+ 0.998 530 1.000 C PGS_C08HBa0060C12.1-_SGN-E297456+ (13424 12895) Alignment (genomic DNA sequence = upper lines): ATGGGGAACC ATAACCTTCA CTTGCTAATA GTACTCTTAT CTCTCCAATG TTTTCTTGTT 13365 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ATGGGGAACC ATAACCTTCA CTTGCTAATA GTACTCTGAT CTCTCCAATG TTTTCTTGTT 60 CACAACACCA TGGCTAAATC AGCCATGGCC TCAAATCCAG CTGCCATTAA ATTCATCAAA 13305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACACCA TGGCTAAATC AGCCATGGCC TCAAATCCAG CTGCCATTAA ATTCATCAAA 120 GTTTCATGTA AAGCCACACT TTACCCTGTT TTATGTGTCC AATGCCTCTC TGCTTTCGCC 13245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCATGTA AAGCCACACT TTACCCTGTT TTATGTGTCC AATGCCTCTC TGCTTTCGCC 180 AACACAGTTA AACAGAGCGA GAAGCAACTA GCTCATGCTG CTTTATCAGT TAGTTTAAGC 13185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACAGTTA AACAGAGCGA GAAGCAACTA GCTCATGCTG CTTTATCAGT TAGTTTAAGC 240 AAAGCAAAAT CCACTATCAT ATTCGTATCG AAGTTAAATA GAATGAGAGG TCTAAAACCA 13125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCAAAAT CCACTATCAT ATTCGTATCG AAGTTAAATA GAATGAGAGG TCTAAAACCA 300 ATAGAAAAAC AAGCAGTCAA GGACTGTATG GATACTATGA GTGATAGTGT CGATCAGATA 13065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAAAAAC AAGCAGTCAA GGACTGTATG GATACTATGA GTGATAGTGT CGATCAGATA 360 AACAAATCAA TTCCGGAACT TGGACATACT GGTCAATTTT CAAGCGGACA GGATTTCATG 13005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAATCAA TTCCGGAACT TGGACATACT GGTCAATTTT CAAGCGGACA GGATTTCATG 420 TGGCATGTTA GTAATGTACA GACTTGGGTA AGTGCTGCAC TTACTGATGA AAGCACTTGT 12945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCATGTTA GTAATGTACA GACTTGGGTA AGTGCTGCAC TTACTGATGA AAGCACTTGT 480 CTTGATGGAT TTTCAGGGCC TGGTGTGAAT GTAAATGTGA AAGCTGCTTT 12895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGATGGAT TTTCAGGGCC TGGTGTGAAT GTAAATGTGA AAGCTGCTTT 530 hqPGS_C08HBa0060C12.1-_SGN-E297456+ (13424 12895) ******************************************************************************** EST sequence 312 +strand 421 n (File: SGN-E348956+) 1 GAAAAATAAC AATGGGGAAC CATAACCTTC ACTTGCTAAT AGTACTCTTA TCTCTCCAAT 61 GTTTTCTTGT TCACAACACC ATGGCTAAAT CAGCCATGGC CTCAAATCCA GCTGCCATTA 121 AATTCATCAA AGTTTCATGT AAAGCCACAC TTTACCCTGT TTTATGTGTC CAATGCCTCT 181 CTGCTTTCGC CAACACAGTT AAACAGAGCG AGAAGCAACT AGCTCATGCT GCTTTATCAG 241 TTAGTTTAAG CAAAGCAAAA TCCACTATCA TATTCGTATC GAAGTTAAAT AGAATGAGAG 301 GTCTAAAACC AATAGAAAAA CAAGCAGTCA AGGACTGTAT GGATACTATG AGTGATAGTG 361 TCGATCAGAT AAACAAATCA ATTCCGGAAC TTGGACATAC TGGTCANNAT TTTCAAGCGG 421 A Predicted gene structure (within gDNA segment 14035 to 12270): Exon 1 13435 13017 ( 419 n); cDNA 1 421 ( 421 n); score: 0.988 MATCH C08HBa0060C12.1- SGN-E348956+ 0.988 419 0.995 C PGS_C08HBa0060C12.1-_SGN-E348956+ (13435 13017) Alignment (genomic DNA sequence = upper lines): GAAAAATAAC AATGGGGAAC CATAACCTTC ACTTGCTAAT AGTACTCTTA TCTCTCCAAT 13376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAATAAC AATGGGGAAC CATAACCTTC ACTTGCTAAT AGTACTCTTA TCTCTCCAAT 60 GTTTTCTTGT TCACAACACC ATGGCTAAAT CAGCCATGGC CTCAAATCCA GCTGCCATTA 13316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCTTGT TCACAACACC ATGGCTAAAT CAGCCATGGC CTCAAATCCA GCTGCCATTA 120 AATTCATCAA AGTTTCATGT AAAGCCACAC TTTACCCTGT TTTATGTGTC CAATGCCTCT 13256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCATCAA AGTTTCATGT AAAGCCACAC TTTACCCTGT TTTATGTGTC CAATGCCTCT 180 CTGCTTTCGC CAACACAGTT AAACAGAGCG AGAAGCAACT AGCTCATGCT GCTTTATCAG 13196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTTTCGC CAACACAGTT AAACAGAGCG AGAAGCAACT AGCTCATGCT GCTTTATCAG 240 TTAGTTTAAG CAAAGCAAAA TCCACTATCA TATTCGTATC GAAGTTAAAT AGAATGAGAG 13136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTTAAG CAAAGCAAAA TCCACTATCA TATTCGTATC GAAGTTAAAT AGAATGAGAG 300 GTCTAAAACC AATAGAAAAA CAAGCAGTCA AGGACTGTAT GGATACTATG AGTGATAGTG 13076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTAAAACC AATAGAAAAA CAAGCAGTCA AGGACTGTAT GGATACTATG AGTGATAGTG 360 TCGATCAGAT AAACAAATCA ATTCCGGAAC TTGGACATAC TGGTCA--AT TTTCAAGCGG 13018 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| TCGATCAGAT AAACAAATCA ATTCCGGAAC TTGGACATAC TGGTCANNAT TTTCAAGCGG 420 A 13017 | A 421 hqPGS_C08HBa0060C12.1-_SGN-E348956+ (13435 13017) ******************************************************************************** EST sequence 118 -strand 502 n (File: SGN-E226546-) 1 AAAGAAGAAC CTAACTGAGA TTTTGACTTC AAAGGATGTC AAGGCTACTC TTTTGGATTT 61 GGTTGAGAGG AATGCGCTGA ATAGACCCTT GTTGACGCTT CTTGATGAAA ACATTGCAAC 121 TGCACATAGT GTTAACCAGA AACAAGCAGC AGAATACATG GAAAAGCTGA GAGGACTTGT 181 TCTGAAGTAC CTAACAGTAT AGATTCCATC TCAAGGCTAT CAAATGCTTG TCTCATGTTT 241 ATACAGAGAA ATGGTGAGAA TTTCTGGTTA TTTATATTTT ACTAATATTG TAGTATATTA 301 CAAAATTTTG TAGGAATATG AACTTAGAAT GGATCCCTTT AATAACAATA AGAAAGTATC 361 CCATCATTTG TGAAAAGAAT GAGTACACCA TGTAACTGAA AATCCATGTT CTTTCTTCCT 421 TGTCTGTTGG AAAGTGTGAA ATCCTATTTT TACTGAAAGT GAAAAAAAAA AAAAAAAAAA 481 CAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 18832 to 14883): Exon 1 18222 18174 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 18173 18069 ( 105 n); Pd: 0.970 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 18068 17979 ( 90 n); cDNA 50 139 ( 90 n); score: 1.000 Intron 2 17978 16206 (1773 n); Pd: 0.950 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 16205 15883 ( 323 n); cDNA 140 462 ( 323 n); score: 1.000 PPA cDNA 463 502 MATCH C08HBa0060C12.1- SGN-E226546- 1.000 462 0.920 C PGS_C08HBa0060C12.1-_SGN-E226546- (18222 18174,18068 17979,16205 15883) Alignment (genomic DNA sequence = upper lines): AAAGAAGAAC CTAACTGAGA TTTTGACTTC AAAGGATGTC AAGGCTACTG TATGTGATAG 18163 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAAGAAGAAC CTAACTGAGA TTTTGACTTC AAAGGATGTC AAGGCTACT. .......... 49 TTTCTAAATT CTGCTGCTTC TTTTATATGT GGGTGTGGTT TGTATATTCT CTTAGCCTTG 18103 .......... .......... .......... .......... .......... .......... 49 TTGCTGACTT GGGTTGTTCC GTTTTCTCGA GCAGCTTTTG GATTTGGTTG AGAGGAATGC 18043 |||||| |||||||||| |||||||||| .......... .......... .......... ....CTTTTG GATTTGGTTG AGAGGAATGC 75 GCTGAATAGA CCCTTGTTGA CGCTTCTTGA TGAAAACATT GCAACTGCAC ATAGTGTTAA 17983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAATAGA CCCTTGTTGA CGCTTCTTGA TGAAAACATT GCAACTGCAC ATAGTGTTAA 135 CCAGGTGAGA CAAGCAAATT CCACACAATG TAGATAGAAG TTCTGTGGGA GTGATGATGC 17923 |||| CCAG...... .......... .......... .......... .......... .......... 139 ATATTTTTGA AGATATCGGT GCAAACGTCA CATAAATTAA CTGTAACTTC AGTCGAAAAG 17863 .......... .......... .......... .......... .......... .......... 139 TGTGATTCGA AAAGGAAAAA GAAGTAACTT TTCGAACTGA GCATCAGTAA CTGACATAAG 17803 .......... .......... .......... .......... .......... .......... 139 AATTCACACA ATTTTCTAAA TTTTCAGTGT CTTTCAAGGT TAAGCTGGTT TTATCCTAAT 17743 .......... .......... .......... .......... .......... .......... 139 AGTAATATAA TGAACAACAT AAAATCATAT ACTGAAAGCA CACCTTGTCT GGGTTGAAAA 17683 .......... .......... .......... .......... .......... .......... 139 TCTACTTTTT TTTTCTTGAT AAGGTACTTT TCTGGGTTGA GAATTGGTTG GATAGGCACC 17623 .......... .......... .......... .......... .......... .......... 139 AACGGTGTGG CCTATTGGTC AATAGAGTAG GTTGAGAACT ATGAGGTCTC ATGTTCAAAT 17563 .......... .......... .......... .......... .......... .......... 139 TTCTGTAGAG ATAAAAATTT CTTCCAATTT GTCTTAGTCT TGGTGGACAG TTACAGGTAC 17503 .......... .......... .......... .......... .......... .......... 139 CTATTGTTGT TGTCATGTAT CTCATAGAAT TAGTCAAGGT GGGCCGAAAG CTGGCCCGGA 17443 .......... .......... .......... .......... .......... .......... 139 TACCATGGTC ATCAAAAAAA GAAAAAGAAT TGGTTGGGGT AGAAATTGTG AGGCAGCATC 17383 .......... .......... .......... .......... .......... .......... 139 TATTAAATGT TCCTCATATC ATGTAGTGGC AAGTGAATTG CCAGTATCAG CTTACGACAT 17323 .......... .......... .......... .......... .......... .......... 139 TCCTGAGCAG TCTTACAATC TTTGTAGTGA AGTTTATAGC CAATCAATTG TCAATCTTTG 17263 .......... .......... .......... .......... .......... .......... 139 TTCCGTAAAA GGAGACACCG GAATCTCTGA GTTACATGTA GAATTTCCTA TCATTTCTTT 17203 .......... .......... .......... .......... .......... .......... 139 GTTAGTTTAT CATTGTTTAG ACTAATTATG ATAAAGTTGA ACGGTTTTCC TTCACTCAAC 17143 .......... .......... .......... .......... .......... .......... 139 TCTTTTCTGG GGTCTGATAG TTTCTCCACC ACATCTTTTG GGAATATATC TGGCAAAATA 17083 .......... .......... .......... .......... .......... .......... 139 TCTTTCATTT ACAAATTACA TAGATGTACA AAGAGCAGAA AATTATTTCT GAATTTTCCA 17023 .......... .......... .......... .......... .......... .......... 139 ATTGCACTCC ACATAACTCT TATGAAAATG GACATTCAAG TTCAAACTTA ACTAGTTCTG 16963 .......... .......... .......... .......... .......... .......... 139 TTATCTTCAC GTTTGGCTAT TTTTCTTTTT GAATCTTCTC TTCGTCGCTT ATAAGAGAAA 16903 .......... .......... .......... .......... .......... .......... 139 AAGAAACATC CATAATTTAA ATTGAACGTG ATAAGTACCT TTATGCTTTT GTTTGAGTCT 16843 .......... .......... .......... .......... .......... .......... 139 TCTTATGCAC TAGTTGAGTA TGGTCAATTA TTGTTCAAGT GGATTGAGCA TTGCTTAAGG 16783 .......... .......... .......... .......... .......... .......... 139 AAGAAATTAT TCTTTGGGAC GATGAATTCA ATCAAATAAT TGAACTGCAT AAGCCGATTA 16723 .......... .......... .......... .......... .......... .......... 139 CTCTCGTGAA AGTTATTTTC TGGATAAATA AAGCCACAAC GGATTTTAGC TCATGGAGTT 16663 .......... .......... .......... .......... .......... .......... 139 CATCTAATGC ATAAAAACAT GAAAATGATT ACTAGTAGCG TTAAGAACTG AAAAGATGAG 16603 .......... .......... .......... .......... .......... .......... 139 CAAGTAGATG TAAGATGAAC TGTTCAGAGA TGCTATAATA TGCACACGCG TTGAGTGTCC 16543 .......... .......... .......... .......... .......... .......... 139 ACAATGCCTG TCTAATATTT TTTTCAGATA CTCTGTGAAT GTTCTTCATA AACCTGATAG 16483 .......... .......... .......... .......... .......... .......... 139 ATGATAAAAT AGGATTTTGT AGTAACTTCT CTAGATGTCC AGGCTTGTTA ATCTCTGGTT 16423 .......... .......... .......... .......... .......... .......... 139 AGAGTTTGAC ATTTACTTGG ATACACTTTA AAATATCTCT AATCATATGT GTTCCTTTCC 16363 .......... .......... .......... .......... .......... .......... 139 GATGGATGTG TAAAAGCTTG ACAATGGCTA CATGTCAACA CCATTATTGT AATTTATGGG 16303 .......... .......... .......... .......... .......... .......... 139 TGCATAATTT TTTAGTGAAA AATAATGATC ACTTTGCTTA GAAGCTTTAA CTATACTACT 16243 .......... .......... .......... .......... .......... .......... 139 GTCTTGAATT TGAACTGATC TTCTTTTGGT AACGCAGAAA CAAGCAGCAG AATACATGGA 16183 ||| |||||||||| |||||||||| .......... .......... .......... .......AAA CAAGCAGCAG AATACATGGA 162 AAAGCTGAGA GGACTTGTTC TGAAGTACCT AACAGTATAG ATTCCATCTC AAGGCTATCA 16123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTGAGA GGACTTGTTC TGAAGTACCT AACAGTATAG ATTCCATCTC AAGGCTATCA 222 AATGCTTGTC TCATGTTTAT ACAGAGAAAT GGTGAGAATT TCTGGTTATT TATATTTTAC 16063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCTTGTC TCATGTTTAT ACAGAGAAAT GGTGAGAATT TCTGGTTATT TATATTTTAC 282 TAATATTGTA GTATATTACA AAATTTTGTA GGAATATGAA CTTAGAATGG ATCCCTTTAA 16003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATATTGTA GTATATTACA AAATTTTGTA GGAATATGAA CTTAGAATGG ATCCCTTTAA 342 TAACAATAAG AAAGTATCCC ATCATTTGTG AAAAGAATGA GTACACCATG TAACTGAAAA 15943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACAATAAG AAAGTATCCC ATCATTTGTG AAAAGAATGA GTACACCATG TAACTGAAAA 402 TCCATGTTCT TTCTTCCTTG TCTGTTGGAA AGTGTGAAAT CCTATTTTTA CTGAAAGTGA 15883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATGTTCT TTCTTCCTTG TCTGTTGGAA AGTGTGAAAT CCTATTTTTA CTGAAAGTGA 462 hqPGS_C08HBa0060C12.1-_SGN-E226546- (18222 18174,18068 17979,16205 15883) ******************************************************************************** EST sequence 111 -strand 462 n (File: SGN-E226904-) 1 CAAAGGATGT CAAGGCTACT CTTTTGGATT TGGTTGAAAG GAATGCGCTA AATAAACCCC 61 TGTTAACGCT TCTTGATGAA AACATTGCAA CTGCACATAG TGTTAACCAG AAACAAGCAG 121 CAGAATACAT GGAAAAGCTG AGAGGACTTG TTCTGAAGTA CCTAACAGTA TAGATTCCAT 181 CTCAAGGCTA TCAAAAGCTT GTCTCATGTT TATACAGAGA AATGGTGAGA ATTTCTGGTT 241 ATTTATATTT TACTAATATT GTAGTATATT ACAAAATTTT GTAGGAATAT GAACTTAGAA 301 TGGATCCCTT TAATAACAAT AAGAAAGTAT CCCATCATTT GTGAAAAGAA TGAGTACACC 361 ATGTAACTGA AAATCCATGT TCTTTCTTCC TTGTCTGTTG GAAAGTGTGA AATCCTATTT 421 TTTCTGGAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 19283 to 14894): Exon 1 18193 18174 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 18173 18069 ( 105 n); Pd: 0.970 (s: 0), Pa: 0.968 (s: 0.90) Exon 2 18068 17979 ( 90 n); cDNA 21 110 ( 90 n); score: 0.944 Intron 2 17978 16206 (1773 n); Pd: 0.950 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 3 16205 15887 ( 319 n); cDNA 111 429 ( 319 n); score: 0.991 PPA cDNA 430 462 MATCH C08HBa0060C12.1- SGN-E226904- 0.980 429 0.929 C PGS_C08HBa0060C12.1-_SGN-E226904- (18193 18174,18068 17979,16205 15887) Alignment (genomic DNA sequence = upper lines): CAAAGGATGT CAAGGCTACT GTATGTGATA GTTTCTAAAT TCTGCTGCTT CTTTTATATG 18134 |||||||||| |||||||||| CAAAGGATGT CAAGGCTACT .......... .......... .......... .......... 20 TGGGTGTGGT TTGTATATTC TCTTAGCCTT GTTGCTGACT TGGGTTGTTC CGTTTTCTCG 18074 .......... .......... .......... .......... .......... .......... 20 AGCAGCTTTT GGATTTGGTT GAGAGGAATG CGCTGAATAG ACCCTTGTTG ACGCTTCTTG 18014 ||||| |||||||||| || ||||||| |||| |||| |||| |||| |||||||||| .....CTTTT GGATTTGGTT GAAAGGAATG CGCTAAATAA ACCCCTGTTA ACGCTTCTTG 75 ATGAAAACAT TGCAACTGCA CATAGTGTTA ACCAGGTGAG ACAAGCAAAT TCCACACAAT 17954 |||||||||| |||||||||| |||||||||| ||||| ATGAAAACAT TGCAACTGCA CATAGTGTTA ACCAG..... .......... .......... 110 GTAGATAGAA GTTCTGTGGG AGTGATGATG CATATTTTTG AAGATATCGG TGCAAACGTC 17894 .......... .......... .......... .......... .......... .......... 110 ACATAAATTA ACTGTAACTT CAGTCGAAAA GTGTGATTCG AAAAGGAAAA AGAAGTAACT 17834 .......... .......... .......... .......... .......... .......... 110 TTTCGAACTG AGCATCAGTA ACTGACATAA GAATTCACAC AATTTTCTAA ATTTTCAGTG 17774 .......... .......... .......... .......... .......... .......... 110 TCTTTCAAGG TTAAGCTGGT TTTATCCTAA TAGTAATATA ATGAACAACA TAAAATCATA 17714 .......... .......... .......... .......... .......... .......... 110 TACTGAAAGC ACACCTTGTC TGGGTTGAAA ATCTACTTTT TTTTTCTTGA TAAGGTACTT 17654 .......... .......... .......... .......... .......... .......... 110 TTCTGGGTTG AGAATTGGTT GGATAGGCAC CAACGGTGTG GCCTATTGGT CAATAGAGTA 17594 .......... .......... .......... .......... .......... .......... 110 GGTTGAGAAC TATGAGGTCT CATGTTCAAA TTTCTGTAGA GATAAAAATT TCTTCCAATT 17534 .......... .......... .......... .......... .......... .......... 110 TGTCTTAGTC TTGGTGGACA GTTACAGGTA CCTATTGTTG TTGTCATGTA TCTCATAGAA 17474 .......... .......... .......... .......... .......... .......... 110 TTAGTCAAGG TGGGCCGAAA GCTGGCCCGG ATACCATGGT CATCAAAAAA AGAAAAAGAA 17414 .......... .......... .......... .......... .......... .......... 110 TTGGTTGGGG TAGAAATTGT GAGGCAGCAT CTATTAAATG TTCCTCATAT CATGTAGTGG 17354 .......... .......... .......... .......... .......... .......... 110 CAAGTGAATT GCCAGTATCA GCTTACGACA TTCCTGAGCA GTCTTACAAT CTTTGTAGTG 17294 .......... .......... .......... .......... .......... .......... 110 AAGTTTATAG CCAATCAATT GTCAATCTTT GTTCCGTAAA AGGAGACACC GGAATCTCTG 17234 .......... .......... .......... .......... .......... .......... 110 AGTTACATGT AGAATTTCCT ATCATTTCTT TGTTAGTTTA TCATTGTTTA GACTAATTAT 17174 .......... .......... .......... .......... .......... .......... 110 GATAAAGTTG AACGGTTTTC CTTCACTCAA CTCTTTTCTG GGGTCTGATA GTTTCTCCAC 17114 .......... .......... .......... .......... .......... .......... 110 CACATCTTTT GGGAATATAT CTGGCAAAAT ATCTTTCATT TACAAATTAC ATAGATGTAC 17054 .......... .......... .......... .......... .......... .......... 110 AAAGAGCAGA AAATTATTTC TGAATTTTCC AATTGCACTC CACATAACTC TTATGAAAAT 16994 .......... .......... .......... .......... .......... .......... 110 GGACATTCAA GTTCAAACTT AACTAGTTCT GTTATCTTCA CGTTTGGCTA TTTTTCTTTT 16934 .......... .......... .......... .......... .......... .......... 110 TGAATCTTCT CTTCGTCGCT TATAAGAGAA AAAGAAACAT CCATAATTTA AATTGAACGT 16874 .......... .......... .......... .......... .......... .......... 110 GATAAGTACC TTTATGCTTT TGTTTGAGTC TTCTTATGCA CTAGTTGAGT ATGGTCAATT 16814 .......... .......... .......... .......... .......... .......... 110 ATTGTTCAAG TGGATTGAGC ATTGCTTAAG GAAGAAATTA TTCTTTGGGA CGATGAATTC 16754 .......... .......... .......... .......... .......... .......... 110 AATCAAATAA TTGAACTGCA TAAGCCGATT ACTCTCGTGA AAGTTATTTT CTGGATAAAT 16694 .......... .......... .......... .......... .......... .......... 110 AAAGCCACAA CGGATTTTAG CTCATGGAGT TCATCTAATG CATAAAAACA TGAAAATGAT 16634 .......... .......... .......... .......... .......... .......... 110 TACTAGTAGC GTTAAGAACT GAAAAGATGA GCAAGTAGAT GTAAGATGAA CTGTTCAGAG 16574 .......... .......... .......... .......... .......... .......... 110 ATGCTATAAT ATGCACACGC GTTGAGTGTC CACAATGCCT GTCTAATATT TTTTTCAGAT 16514 .......... .......... .......... .......... .......... .......... 110 ACTCTGTGAA TGTTCTTCAT AAACCTGATA GATGATAAAA TAGGATTTTG TAGTAACTTC 16454 .......... .......... .......... .......... .......... .......... 110 TCTAGATGTC CAGGCTTGTT AATCTCTGGT TAGAGTTTGA CATTTACTTG GATACACTTT 16394 .......... .......... .......... .......... .......... .......... 110 AAAATATCTC TAATCATATG TGTTCCTTTC CGATGGATGT GTAAAAGCTT GACAATGGCT 16334 .......... .......... .......... .......... .......... .......... 110 ACATGTCAAC ACCATTATTG TAATTTATGG GTGCATAATT TTTTAGTGAA AAATAATGAT 16274 .......... .......... .......... .......... .......... .......... 110 CACTTTGCTT AGAAGCTTTA ACTATACTAC TGTCTTGAAT TTGAACTGAT CTTCTTTTGG 16214 .......... .......... .......... .......... .......... .......... 110 TAACGCAGAA ACAAGCAGCA GAATACATGG AAAAGCTGAG AGGACTTGTT CTGAAGTACC 16154 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AA ACAAGCAGCA GAATACATGG AAAAGCTGAG AGGACTTGTT CTGAAGTACC 162 TAACAGTATA GATTCCATCT CAAGGCTATC AAATGCTTGT CTCATGTTTA TACAGAGAAA 16094 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TAACAGTATA GATTCCATCT CAAGGCTATC AAAAGCTTGT CTCATGTTTA TACAGAGAAA 222 TGGTGAGAAT TTCTGGTTAT TTATATTTTA CTAATATTGT AGTATATTAC AAAATTTTGT 16034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAGAAT TTCTGGTTAT TTATATTTTA CTAATATTGT AGTATATTAC AAAATTTTGT 282 AGGAATATGA ACTTAGAATG GATCCCTTTA ATAACAATAA GAAAGTATCC CATCATTTGT 15974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAATATGA ACTTAGAATG GATCCCTTTA ATAACAATAA GAAAGTATCC CATCATTTGT 342 GAAAAGAATG AGTACACCAT GTAACTGAAA ATCCATGTTC TTTCTTCCTT GTCTGTTGGA 15914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAATG AGTACACCAT GTAACTGAAA ATCCATGTTC TTTCTTCCTT GTCTGTTGGA 402 AAGTGTGAAA TCCTATTTTT ACTGAAA 15887 |||||||||| |||||||||| ||| || AAGTGTGAAA TCCTATTTTT TCTGGAA 429 hqPGS_C08HBa0060C12.1-_SGN-E226904- (18193 18174,18068 17979,16205 15887) ******************************************************************************** EST sequence 110 -strand 385 n (File: SGN-E226508-) 1 AAAAACATTG CAACTGCACA TAGTGTTAAC CAGAAACAAG CAGCAGAATA CATGGAAAAG 61 CTGAGAGGAC TTGTTCTTAA GTACCTAACA GTATAGATTC CATCTCAAGG CTATCAAAAG 121 CTTGTCTCAT GTTTAAACAA AAAAATGGTG AGAATTTCTG GTTATTTATA TTTTACTAAA 181 ATTGTAGTAT ATTACAAAAT TTTGTAGGAA TATGAACTTA GAATGGATCC CTTTAATAAC 241 AATAAGAAAG TATCCCATCA TTTGTGAAAA GAATGAGTAC ACCATGTAAC TGAAAATCCA 301 TGTTCTTTCT TCCCTGTCTG TTGGAAAGTG TGAAATCCTA TTTTTTCTGG AAAAAAAAAA 361 AAAAAAAAAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 18630 to 14894): Exon 1 18010 17979 ( 32 n); cDNA 2 33 ( 32 n); score: 1.000 Intron 1 17978 16206 (1773 n); Pd: 0.950 (s: 0), Pa: 0.999 (s: 0.98) Exon 2 16205 15887 ( 319 n); cDNA 34 352 ( 319 n); score: 0.972 PPA cDNA 353 385 MATCH C08HBa0060C12.1- SGN-E226508- 0.972 351 0.912 C PGS_C08HBa0060C12.1-_SGN-E226508- (18010 17979,16205 15887) Alignment (genomic DNA sequence = upper lines): AAAACATTGC AACTGCACAT AGTGTTAACC AGGTGAGACA AGCAAATTCC ACACAATGTA 17951 |||||||||| |||||||||| |||||||||| || AAAACATTGC AACTGCACAT AGTGTTAACC AG........ .......... .......... 33 GATAGAAGTT CTGTGGGAGT GATGATGCAT ATTTTTGAAG ATATCGGTGC AAACGTCACA 17891 .......... .......... .......... .......... .......... .......... 33 TAAATTAACT GTAACTTCAG TCGAAAAGTG TGATTCGAAA AGGAAAAAGA AGTAACTTTT 17831 .......... .......... .......... .......... .......... .......... 33 CGAACTGAGC ATCAGTAACT GACATAAGAA TTCACACAAT TTTCTAAATT TTCAGTGTCT 17771 .......... .......... .......... .......... .......... .......... 33 TTCAAGGTTA AGCTGGTTTT ATCCTAATAG TAATATAATG AACAACATAA AATCATATAC 17711 .......... .......... .......... .......... .......... .......... 33 TGAAAGCACA CCTTGTCTGG GTTGAAAATC TACTTTTTTT TTCTTGATAA GGTACTTTTC 17651 .......... .......... .......... .......... .......... .......... 33 TGGGTTGAGA ATTGGTTGGA TAGGCACCAA CGGTGTGGCC TATTGGTCAA TAGAGTAGGT 17591 .......... .......... .......... .......... .......... .......... 33 TGAGAACTAT GAGGTCTCAT GTTCAAATTT CTGTAGAGAT AAAAATTTCT TCCAATTTGT 17531 .......... .......... .......... .......... .......... .......... 33 CTTAGTCTTG GTGGACAGTT ACAGGTACCT ATTGTTGTTG TCATGTATCT CATAGAATTA 17471 .......... .......... .......... .......... .......... .......... 33 GTCAAGGTGG GCCGAAAGCT GGCCCGGATA CCATGGTCAT CAAAAAAAGA AAAAGAATTG 17411 .......... .......... .......... .......... .......... .......... 33 GTTGGGGTAG AAATTGTGAG GCAGCATCTA TTAAATGTTC CTCATATCAT GTAGTGGCAA 17351 .......... .......... .......... .......... .......... .......... 33 GTGAATTGCC AGTATCAGCT TACGACATTC CTGAGCAGTC TTACAATCTT TGTAGTGAAG 17291 .......... .......... .......... .......... .......... .......... 33 TTTATAGCCA ATCAATTGTC AATCTTTGTT CCGTAAAAGG AGACACCGGA ATCTCTGAGT 17231 .......... .......... .......... .......... .......... .......... 33 TACATGTAGA ATTTCCTATC ATTTCTTTGT TAGTTTATCA TTGTTTAGAC TAATTATGAT 17171 .......... .......... .......... .......... .......... .......... 33 AAAGTTGAAC GGTTTTCCTT CACTCAACTC TTTTCTGGGG TCTGATAGTT TCTCCACCAC 17111 .......... .......... .......... .......... .......... .......... 33 ATCTTTTGGG AATATATCTG GCAAAATATC TTTCATTTAC AAATTACATA GATGTACAAA 17051 .......... .......... .......... .......... .......... .......... 33 GAGCAGAAAA TTATTTCTGA ATTTTCCAAT TGCACTCCAC ATAACTCTTA TGAAAATGGA 16991 .......... .......... .......... .......... .......... .......... 33 CATTCAAGTT CAAACTTAAC TAGTTCTGTT ATCTTCACGT TTGGCTATTT TTCTTTTTGA 16931 .......... .......... .......... .......... .......... .......... 33 ATCTTCTCTT CGTCGCTTAT AAGAGAAAAA GAAACATCCA TAATTTAAAT TGAACGTGAT 16871 .......... .......... .......... .......... .......... .......... 33 AAGTACCTTT ATGCTTTTGT TTGAGTCTTC TTATGCACTA GTTGAGTATG GTCAATTATT 16811 .......... .......... .......... .......... .......... .......... 33 GTTCAAGTGG ATTGAGCATT GCTTAAGGAA GAAATTATTC TTTGGGACGA TGAATTCAAT 16751 .......... .......... .......... .......... .......... .......... 33 CAAATAATTG AACTGCATAA GCCGATTACT CTCGTGAAAG TTATTTTCTG GATAAATAAA 16691 .......... .......... .......... .......... .......... .......... 33 GCCACAACGG ATTTTAGCTC ATGGAGTTCA TCTAATGCAT AAAAACATGA AAATGATTAC 16631 .......... .......... .......... .......... .......... .......... 33 TAGTAGCGTT AAGAACTGAA AAGATGAGCA AGTAGATGTA AGATGAACTG TTCAGAGATG 16571 .......... .......... .......... .......... .......... .......... 33 CTATAATATG CACACGCGTT GAGTGTCCAC AATGCCTGTC TAATATTTTT TTCAGATACT 16511 .......... .......... .......... .......... .......... .......... 33 CTGTGAATGT TCTTCATAAA CCTGATAGAT GATAAAATAG GATTTTGTAG TAACTTCTCT 16451 .......... .......... .......... .......... .......... .......... 33 AGATGTCCAG GCTTGTTAAT CTCTGGTTAG AGTTTGACAT TTACTTGGAT ACACTTTAAA 16391 .......... .......... .......... .......... .......... .......... 33 ATATCTCTAA TCATATGTGT TCCTTTCCGA TGGATGTGTA AAAGCTTGAC AATGGCTACA 16331 .......... .......... .......... .......... .......... .......... 33 TGTCAACACC ATTATTGTAA TTTATGGGTG CATAATTTTT TAGTGAAAAA TAATGATCAC 16271 .......... .......... .......... .......... .......... .......... 33 TTTGCTTAGA AGCTTTAACT ATACTACTGT CTTGAATTTG AACTGATCTT CTTTTGGTAA 16211 .......... .......... .......... .......... .......... .......... 33 CGCAGAAACA AGCAGCAGAA TACATGGAAA AGCTGAGAGG ACTTGTTCTG AAGTACCTAA 16151 ||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| .....AAACA AGCAGCAGAA TACATGGAAA AGCTGAGAGG ACTTGTTCTT AAGTACCTAA 88 CAGTATAGAT TCCATCTCAA GGCTATCAAA TGCTTGTCTC ATGTTTATAC AGAGAAATGG 16091 |||||||||| |||||||||| |||||||||| ||||||||| ||||||| || | | |||||| CAGTATAGAT TCCATCTCAA GGCTATCAAA AGCTTGTCTC ATGTTTAAAC AAAAAAATGG 148 TGAGAATTTC TGGTTATTTA TATTTTACTA ATATTGTAGT ATATTACAAA ATTTTGTAGG 16031 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TGAGAATTTC TGGTTATTTA TATTTTACTA AAATTGTAGT ATATTACAAA ATTTTGTAGG 208 AATATGAACT TAGAATGGAT CCCTTTAATA ACAATAAGAA AGTATCCCAT CATTTGTGAA 15971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGAACT TAGAATGGAT CCCTTTAATA ACAATAAGAA AGTATCCCAT CATTTGTGAA 268 AAGAATGAGT ACACCATGTA ACTGAAAATC CATGTTCTTT CTTCCTTGTC TGTTGGAAAG 15911 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AAGAATGAGT ACACCATGTA ACTGAAAATC CATGTTCTTT CTTCCCTGTC TGTTGGAAAG 328 TGTGAAATCC TATTTTTACT GAAA 15887 |||||||||| ||||||| || | || TGTGAAATCC TATTTTTTCT GGAA 352 hqPGS_C08HBa0060C12.1-_SGN-E226508- (18010 17979,16205 15887) ******************************************************************************** EST sequence 197 -strand 794 n (File: SGN-E320569-) 1 GCTGTAGACT AGAATGGGAT CCAGATCGTT TATGGGTCGG CCTCACACGG GTCATATAGC 61 CCGACTCGAG TTCCAGACAC GCCTTGCGAA CGATGCTGCG GCCAGAGAAG AATTTGAACG 121 GCAAGTTCGT GAAGAGAAAG AACGTCGCAG AGTTCTTCGT GAGTCACGAG TGATTCCGGA 181 TACAGTGGAA GGGCTTGTGG AGTTTTTTCT TGACACTGAA GCTCAAGAGA TTGAATTTGA 241 GATTGCAAGA ATGAGACCAC GATTGAACAA AGAATTCTTT GACCATCTGC AAGTCGAACT 301 TGGAAAGCTG CGTTTTTCTG TAAACAAAAC TCAGGCTGTG GAAGACAGAT TATTTGAACT 361 GGAAGCACTG CAAAAGGCCC TGCAAGAAGC AACAGAAGCC TATGATAAAT TACAAGCAGA 421 TCTTGTAGCA ACAAAGAAGA ACCTACCTGA GATTTTGACT TCAAAGGATG TCAAGGCTAC 481 TCTTTTGGAT TTGGTTGAGA GGAATGCGCT GAATAGACCC TCCTTGACGC TTCTTGATGA 541 AAACATTGCA ACTGCACATA GTGTTAACCA GAAACAAGCA GCAGAATACA TGGAAAAGCT 601 GAGAGGACTT GTTCTGAAGT ACCTAACAGT ATAGATTCCA TCTCAAGGCT ATCAAATGCT 661 TGTCTCATGT TTATACAGAG AAATGGTGAG AATTTCTGGT TATTTATATT TTACTAATAT 721 TGTAGTATAT TACAAAATTT TGTAGGAATA TGAACTTAGA ATGGATCCCT TTACTAACAA 781 TAAGAAAGTA TCCC Predicted gene structure (within gDNA segment 21878 to 15383): Exon 1 20941 20928 ( 14 n); cDNA 4 17 ( 14 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 0), Pa: 1.000 (s: 0.92) Exon 2 20838 20692 ( 147 n); cDNA 18 163 ( 146 n); score: 0.959 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 164 261 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 262 334 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 335 395 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 18259 18174 ( 86 n); cDNA 396 481 ( 86 n); score: 0.988 Intron 6 18173 18069 ( 105 n); Pd: 0.970 (s: 0.98), Pa: 0.968 (s: 0.96) Exon 7 18068 17979 ( 90 n); cDNA 482 571 ( 90 n); score: 0.978 Intron 7 17978 16206 (1773 n); Pd: 0.950 (s: 0.96), Pa: 0.999 (s: 1.00) Exon 8 16205 15983 ( 223 n); cDNA 572 794 ( 223 n); score: 0.996 MATCH C08HBa0060C12.1- SGN-E320569- 0.987 792 0.997 C PGS_C08HBa0060C12.1-_SGN-E320569- (20941 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 15983) Alignment (genomic DNA sequence = upper lines): GTAGACTAGA ATGGGTAATT TCTCTTCACT TCTGAAGCTC CTTTCAATTA TAATTTTACA 20882 |||||||||| |||| GTAGACTAGA ATGG...... .......... .......... .......... .......... 17 AGTGCATTAT AAAAGTGGTG AATTTTTTTA TTTGTAATTA CAGGATCCAG ATGGTTTATT 20822 ||||||| || ||||| | .......... .......... .......... .......... ...GATCCAG ATCGTTTA-T 33 GGGTCCGCCT CAAACGGGTC ATATAGCCCG ACTCGAGTTC CAGAGACGCC TTGAGAACGA 20762 ||||| |||| || ||||||| |||||||||| |||||||||| |||| ||||| ||| |||||| GGGTCGGCCT CACACGGGTC ATATAGCCCG ACTCGAGTTC CAGACACGCC TTGCGAACGA 93 TGCTGCGGCC AGAGAAGAAT TTGAACGGCA AGTTCGTGAA GAGAAAGAAC GTCGCAGAGT 20702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGCGGCC AGAGAAGAAT TTGAACGGCA AGTTCGTGAA GAGAAAGAAC GTCGCAGAGT 153 TCTTCGTGAG GTAATTTTTT GAAGTTATCA TCTTATCGAA GAATTTATAA TGTTTGGAGC 20642 |||||||||| TCTTCGTGAG .......... .......... .......... .......... .......... 163 AACATTTTAT GGGGCAGAGT AAGGATTTCG AGTTTATAAG TTCATGATTC TAGAAGAAGC 20582 .......... .......... .......... .......... .......... .......... 163 AACTTAGAGT ATTGTGAATA AATTATTTAT ATATATTAAG TAGATTCTTA CATGAGTTCC 20522 .......... .......... .......... .......... .......... .......... 163 ACTGAACCTG TAGTGTAAGC AGACCTGTAG CTACACTCTT GTTTTTTATT TATATTAGGC 20462 .......... .......... .......... .......... .......... .......... 163 CATTACAAGC TACTCAATGC GCCAGTAATG ATTCTCTGTC TTGTGCCAAT GTTAGGATAG 20402 .......... .......... .......... .......... .......... .......... 163 ACACTGACCA TCATTGACAA AAGCTAAGTT TGATAGCAAA AGGCACAACT TTATTTCTTA 20342 .......... .......... .......... .......... .......... .......... 163 ACGAAGTGCA CCGAGCAAGC GCCATGTTCG ATCATGACTA CGACCCGAAC CGCCTAGCCC 20282 .......... .......... .......... .......... .......... .......... 163 CTCGTGGGCC TTGCCATAGG CAGGTTGTTA CCATTATCCA ACAATCTCCC TCCCAACACC 20222 .......... .......... .......... .......... .......... .......... 163 TGCCTCATGC AGAATGTAGC TTTTGCAAAT CAAACTCATG ACCTTGGCTC TGATACTACT 20162 .......... .......... .......... .......... .......... .......... 163 TGTTAGGATC AAGCGATTAT CATCATGCCA AAAGCTATAG ATTTTGGCAT AATGGTAAGC 20102 .......... .......... .......... .......... .......... .......... 163 ACACGGTCAA CAACCAAGTA CGTGGAAATT TTTGTGTGGA TAGAGAGTTG AATCTAAGAT 20042 .......... .......... .......... .......... .......... .......... 163 GTACCACTTG ATAACATGTT AAAATTGATA TTTTCACTTC ATATTAATCT ACTAGAAAAG 19982 .......... .......... .......... .......... .......... .......... 163 GACATTTTAG TTATGACTCC CTTCATTTCA ATTTATTTAT CCTACTTCCT TTTTTAATCC 19922 .......... .......... .......... .......... .......... .......... 163 GTTTGAAAAA GAATGTCTTT TTTTTTCTTT TTGACAACTT TAATTATAGC TTTCCAGATA 19862 .......... .......... .......... .......... .......... .......... 163 ACATGGTTAA GACTGAAAGA TTAATGAACA ATTTAATACA TTTACGCATC TTTAGTTAAG 19802 .......... .......... .......... .......... .......... .......... 163 AGTACAAGAA TCAAAGTCTT TTGTATGCCG TGCCAAGTCA AAATCAAATA AACAAATTGC 19742 .......... .......... .......... .......... .......... .......... 163 AATGGAGAGG GTATATATTA GGTCTTCTAC AATTTGTGGA GTAGTCAATA AGACATCTTT 19682 .......... .......... .......... .......... .......... .......... 163 GTACTCTTTA ATTTTGTTAT GGATGCAAAT GTAATGCATA TCTTTCTCTT ATATGTTCTT 19622 .......... .......... .......... .......... .......... .......... 163 TTCGGTCCTG ATCATAGTCA CGAGTGATTC CGGATACAGT GGAAGGGCTT GTGGAGTTTT 19562 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......TCA CGAGTGATTC CGGATACAGT GGAAGGGCTT GTGGAGTTTT 206 TTCTTGACAC TGAAGCTCAA GAGATTGAAT TTGAGATTGC AAGAATGAGA CCACGGTGAG 19502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTCTTGACAC TGAAGCTCAA GAGATTGAAT TTGAGATTGC AAGAATGAGA CCACG..... 261 TTATCTACTC TCCAATGTCA CAGCTCAGGT GGCCAAAATT TACTGTTCTG GCTTCAAAGC 19442 .......... .......... .......... .......... .......... .......... 261 CAGAAAATGC TATAAGTTGT TTGAATCTTC GCGGCATTAG TTCAGATTCA GCTCTGATAG 19382 .......... .......... .......... .......... .......... .......... 261 GTTATTAAAC AGTCGAGCAT TTAAAGTTGC GACCTTTTGC TTTTGATCAT TCTGTGATCA 19322 .......... .......... .......... .......... .......... .......... 261 TGCACATGTA TTTCGAGTCC GTATTTTGTA AACTTGTGCA GAAAAGCAAA AAGCTATAAA 19262 .......... .......... .......... .......... .......... .......... 261 AATATAGACT TCATATAAAG ATCAAATTTT TGCCTCTTAA CAAGATATGA GTATTTCTTT 19202 .......... .......... .......... .......... .......... .......... 261 ATTAATGGCC ATTTTCTTGA CATTTATGTT GTTATCAAAA TTTGAGAAAG TATTGGTACC 19142 .......... .......... .......... .......... .......... .......... 261 TCACCCAATT TGAAGTTTGC AAACATTTTC TAGAGGAACT GGGACAAGAC TTTTATAACA 19082 .......... .......... .......... .......... .......... .......... 261 TCAAATTGCA TGGGTTTCTT GTCTGTCCCT ACTATAGTTT TTATCTTCTG TACCTGAAAA 19022 .......... .......... .......... .......... .......... .......... 261 CTTCTAACAT ATCTTAGTTT GCAGATTGAA CAAAGAATTC TTTGACCATC TGCAAGTCGA 18962 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATTGAA CAAAGAATTC TTTGACCATC TGCAAGTCGA 297 ACTTGGAAAG CTGCGTTTTT CTGTAAACAA AACTCAGGTT CTTACTGAAA ATTTGGTTGA 18902 |||||||||| |||||||||| |||||||||| ||||||| ACTTGGAAAG CTGCGTTTTT CTGTAAACAA AACTCAG... .......... .......... 334 TTTAGTGTGA GACAGATATG TTAATGAAAT GATACCGACC ATGATATTTT CACAGGCTGT 18842 ||||| .......... .......... .......... .......... .......... .....GCTGT 339 GGAAGACAGA TTATTTGAAC TGGAAGCACT GCAAAAGGCC CTGCAAGAAG CAACAGGTCT 18782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGAAGACAGA TTATTTGAAC TGGAAGCACT GCAAAAGGCC CTGCAAGAAG CAACAG.... 395 GATAAATTGA TTTTTTAGAT TGCTCTTTGA TTAGATATTT CCAGACTCTT ACATGGAAAT 18722 .......... .......... .......... .......... .......... .......... 395 GAGTATGGGT ATATGAGAAG ATCTAGAAGT CGAATTCTGC ATCATCTAAT TCTTAAGTTT 18662 .......... .......... .......... .......... .......... .......... 395 TGGAGAAACA TAGGAGTACA TATGTGGTTG TGGAGACACG ACTAACAAGT GCATAGAATA 18602 .......... .......... .......... .......... .......... .......... 395 ATATGCATAT ATATTTTAGT AATATCACAT ATATCGCACA TTAACAAAGT TTTCTTATCC 18542 .......... .......... .......... .......... .......... .......... 395 TTATACAAAA ATAAGAGAAT CTAGGTAACC TATGCTTCTC AACAGTAGAC TCAGCTGCAG 18482 .......... .......... .......... .......... .......... .......... 395 TTGTAGTCAG CATACCATGT GAATTGGCCA TTTCTGAGTG TGTATCCTGC ATCACATAAC 18422 .......... .......... .......... .......... .......... .......... 395 ATGGGTTAGA AGGGGGCGGG ATGGGTTTTA TTGAGATACG CAACATAGGC CACGTTCCAC 18362 .......... .......... .......... .......... .......... .......... 395 GGTCTCACAT GCAGTTGAGG TCTTGAGGAT GAAGTCTCAA TTATAAGTTA TCTTGTAGAG 18302 .......... .......... .......... .......... .......... .......... 395 CAATTCTGAC ATCCTGCTGT ATGATTTTTC TTTTTCCTGC AGAAGCCTAT GATAAATTAC 18242 |||||||| |||||||||| .......... .......... .......... .......... ..AAGCCTAT GATAAATTAC 413 AAGCAGATCT TGTAGCAACA AAGAAGAACC TAACTGAGAT TTTGACTTCA AAGGATGTCA 18182 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AAGCAGATCT TGTAGCAACA AAGAAGAACC TACCTGAGAT TTTGACTTCA AAGGATGTCA 473 AGGCTACTGT ATGTGATAGT TTCTAAATTC TGCTGCTTCT TTTATATGTG GGTGTGGTTT 18122 |||||||| AGGCTACT.. .......... .......... .......... .......... .......... 481 GTATATTCTC TTAGCCTTGT TGCTGACTTG GGTTGTTCCG TTTTCTCGAG CAGCTTTTGG 18062 ||||||| .......... .......... .......... .......... .......... ...CTTTTGG 488 ATTTGGTTGA GAGGAATGCG CTGAATAGAC CCTTGTTGAC GCTTCTTGAT GAAAACATTG 18002 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| ATTTGGTTGA GAGGAATGCG CTGAATAGAC CCTCCTTGAC GCTTCTTGAT GAAAACATTG 548 CAACTGCACA TAGTGTTAAC CAGGTGAGAC AAGCAAATTC CACACAATGT AGATAGAAGT 17942 |||||||||| |||||||||| ||| CAACTGCACA TAGTGTTAAC CAG....... .......... .......... .......... 571 TCTGTGGGAG TGATGATGCA TATTTTTGAA GATATCGGTG CAAACGTCAC ATAAATTAAC 17882 .......... .......... .......... .......... .......... .......... 571 TGTAACTTCA GTCGAAAAGT GTGATTCGAA AAGGAAAAAG AAGTAACTTT TCGAACTGAG 17822 .......... .......... .......... .......... .......... .......... 571 CATCAGTAAC TGACATAAGA ATTCACACAA TTTTCTAAAT TTTCAGTGTC TTTCAAGGTT 17762 .......... .......... .......... .......... .......... .......... 571 AAGCTGGTTT TATCCTAATA GTAATATAAT GAACAACATA AAATCATATA CTGAAAGCAC 17702 .......... .......... .......... .......... .......... .......... 571 ACCTTGTCTG GGTTGAAAAT CTACTTTTTT TTTCTTGATA AGGTACTTTT CTGGGTTGAG 17642 .......... .......... .......... .......... .......... .......... 571 AATTGGTTGG ATAGGCACCA ACGGTGTGGC CTATTGGTCA ATAGAGTAGG TTGAGAACTA 17582 .......... .......... .......... .......... .......... .......... 571 TGAGGTCTCA TGTTCAAATT TCTGTAGAGA TAAAAATTTC TTCCAATTTG TCTTAGTCTT 17522 .......... .......... .......... .......... .......... .......... 571 GGTGGACAGT TACAGGTACC TATTGTTGTT GTCATGTATC TCATAGAATT AGTCAAGGTG 17462 .......... .......... .......... .......... .......... .......... 571 GGCCGAAAGC TGGCCCGGAT ACCATGGTCA TCAAAAAAAG AAAAAGAATT GGTTGGGGTA 17402 .......... .......... .......... .......... .......... .......... 571 GAAATTGTGA GGCAGCATCT ATTAAATGTT CCTCATATCA TGTAGTGGCA AGTGAATTGC 17342 .......... .......... .......... .......... .......... .......... 571 CAGTATCAGC TTACGACATT CCTGAGCAGT CTTACAATCT TTGTAGTGAA GTTTATAGCC 17282 .......... .......... .......... .......... .......... .......... 571 AATCAATTGT CAATCTTTGT TCCGTAAAAG GAGACACCGG AATCTCTGAG TTACATGTAG 17222 .......... .......... .......... .......... .......... .......... 571 AATTTCCTAT CATTTCTTTG TTAGTTTATC ATTGTTTAGA CTAATTATGA TAAAGTTGAA 17162 .......... .......... .......... .......... .......... .......... 571 CGGTTTTCCT TCACTCAACT CTTTTCTGGG GTCTGATAGT TTCTCCACCA CATCTTTTGG 17102 .......... .......... .......... .......... .......... .......... 571 GAATATATCT GGCAAAATAT CTTTCATTTA CAAATTACAT AGATGTACAA AGAGCAGAAA 17042 .......... .......... .......... .......... .......... .......... 571 ATTATTTCTG AATTTTCCAA TTGCACTCCA CATAACTCTT ATGAAAATGG ACATTCAAGT 16982 .......... .......... .......... .......... .......... .......... 571 TCAAACTTAA CTAGTTCTGT TATCTTCACG TTTGGCTATT TTTCTTTTTG AATCTTCTCT 16922 .......... .......... .......... .......... .......... .......... 571 TCGTCGCTTA TAAGAGAAAA AGAAACATCC ATAATTTAAA TTGAACGTGA TAAGTACCTT 16862 .......... .......... .......... .......... .......... .......... 571 TATGCTTTTG TTTGAGTCTT CTTATGCACT AGTTGAGTAT GGTCAATTAT TGTTCAAGTG 16802 .......... .......... .......... .......... .......... .......... 571 GATTGAGCAT TGCTTAAGGA AGAAATTATT CTTTGGGACG ATGAATTCAA TCAAATAATT 16742 .......... .......... .......... .......... .......... .......... 571 GAACTGCATA AGCCGATTAC TCTCGTGAAA GTTATTTTCT GGATAAATAA AGCCACAACG 16682 .......... .......... .......... .......... .......... .......... 571 GATTTTAGCT CATGGAGTTC ATCTAATGCA TAAAAACATG AAAATGATTA CTAGTAGCGT 16622 .......... .......... .......... .......... .......... .......... 571 TAAGAACTGA AAAGATGAGC AAGTAGATGT AAGATGAACT GTTCAGAGAT GCTATAATAT 16562 .......... .......... .......... .......... .......... .......... 571 GCACACGCGT TGAGTGTCCA CAATGCCTGT CTAATATTTT TTTCAGATAC TCTGTGAATG 16502 .......... .......... .......... .......... .......... .......... 571 TTCTTCATAA ACCTGATAGA TGATAAAATA GGATTTTGTA GTAACTTCTC TAGATGTCCA 16442 .......... .......... .......... .......... .......... .......... 571 GGCTTGTTAA TCTCTGGTTA GAGTTTGACA TTTACTTGGA TACACTTTAA AATATCTCTA 16382 .......... .......... .......... .......... .......... .......... 571 ATCATATGTG TTCCTTTCCG ATGGATGTGT AAAAGCTTGA CAATGGCTAC ATGTCAACAC 16322 .......... .......... .......... .......... .......... .......... 571 CATTATTGTA ATTTATGGGT GCATAATTTT TTAGTGAAAA ATAATGATCA CTTTGCTTAG 16262 .......... .......... .......... .......... .......... .......... 571 AAGCTTTAAC TATACTACTG TCTTGAATTT GAACTGATCT TCTTTTGGTA ACGCAGAAAC 16202 |||| .......... .......... .......... .......... .......... ......AAAC 575 AAGCAGCAGA ATACATGGAA AAGCTGAGAG GACTTGTTCT GAAGTACCTA ACAGTATAGA 16142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGCAGA ATACATGGAA AAGCTGAGAG GACTTGTTCT GAAGTACCTA ACAGTATAGA 635 TTCCATCTCA AGGCTATCAA ATGCTTGTCT CATGTTTATA CAGAGAAATG GTGAGAATTT 16082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCATCTCA AGGCTATCAA ATGCTTGTCT CATGTTTATA CAGAGAAATG GTGAGAATTT 695 CTGGTTATTT ATATTTTACT AATATTGTAG TATATTACAA AATTTTGTAG GAATATGAAC 16022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTTATTT ATATTTTACT AATATTGTAG TATATTACAA AATTTTGTAG GAATATGAAC 755 TTAGAATGGA TCCCTTTAAT AACAATAAGA AAGTATCCC 15983 |||||||||| |||||||| | |||||||||| ||||||||| TTAGAATGGA TCCCTTTACT AACAATAAGA AAGTATCCC 794 hqPGS_C08HBa0060C12.1-_SGN-E320569- (20941 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 15983) ******************************************************************************** EST sequence 349 +strand 678 n (File: SGN-E340777+) 1 TAGAATGGGA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA GCCCGACTCG 61 AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA CGGCAAGTTC 121 GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAGTCACG AGTGATTCCG GATACAGTGG 181 AAGGGCTTGT GGAGTTTTTT CTTGACACTG AAGCTCAAGA GATTGAATTT GAGATTGCAA 241 GAATGAGACC ACGATTGAAC AAAGAATTCT TTGACCATCT GCAAGTCGAA CTTGGAAAGC 301 TGCGTTTTTC TGTAAACAAA ACTCAGGCTG TGGAAGACAG ATTATTTGAA CTGGAAGCAC 361 TGCAAAAGGC CCTGCAAGAA GCAACAGAAG CCTATGATAA ATTACAAGCA GATCTTGTAG 421 CAACAAAGAA GAACCTAACT GAGATTNTGA CTTCAAAGGA TGTCAAGGCT ACTCTTTTGG 481 ATTTGGTTGA GAGGAAATGC GCTGATAGAC CCTTGTTGAC GCTTCTTGAT GAAAACATTG 541 CAACTGCACA TTAGTGTTAA CCAGAAACAA GCAGCAGAAT ACATGGAAAA GCTGAGAGGG 601 ACTTGTCTGA AGTACCTAAC AGTATAGATT CCATCTCAAG GCTATCAAAT GCTTGTCTCA 661 TGTTTATACA GAGAAATG Predicted gene structure (within gDNA segment 21509 to 15482): Exon 1 20935 20928 ( 8 n); cDNA 1 8 ( 8 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 9 155 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 156 253 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 254 326 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 327 387 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 18259 18174 ( 86 n); cDNA 388 473 ( 86 n); score: 0.988 Intron 6 18173 18069 ( 105 n); Pd: 0.970 (s: 0.98), Pa: 0.968 (s: 0.93) Exon 7 18068 17979 ( 90 n); cDNA 474 564 ( 91 n); score: 0.933 Intron 7 17978 16206 (1773 n); Pd: 0.950 (s: 0.95), Pa: 0.999 (s: 0.93) Exon 8 16205 16092 ( 114 n); cDNA 565 678 ( 114 n); score: 0.969 MATCH C08HBa0060C12.1- SGN-E340777+ 0.984 677 0.999 C PGS_C08HBa0060C12.1-_SGN-E340777+ (20935 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 16092) Alignment (genomic DNA sequence = upper lines): TAGAATGGGT AATTTCTCTT CACTTCTGAA GCTCCTTTCA ATTATAATTT TACAAGTGCA 20876 |||||||| TAGAATGG.. .......... .......... .......... .......... .......... 8 TTATAAAAGT GGTGAATTTT TTTATTTGTA ATTACAGGAT CCAGATGGTT TATTGGGTCC 20816 ||| |||||||||| |||||||||| .......... .......... .......... .......GAT CCAGATGGTT TATTGGGTCC 31 GCCTCAAACG GGTCATATAG CCCGACTCGA GTTCCAGAGA CGCCTTGAGA ACGATGCTGC 20756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTCAAACG GGTCATATAG CCCGACTCGA GTTCCAGAGA CGCCTTGAGA ACGATGCTGC 91 GGCCAGAGAA GAATTTGAAC GGCAAGTTCG TGAAGAGAAA GAACGTCGCA GAGTTCTTCG 20696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAGAGAA GAATTTGAAC GGCAAGTTCG TGAAGAGAAA GAACGTCGCA GAGTTCTTCG 151 TGAGGTAATT TTTTGAAGTT ATCATCTTAT CGAAGAATTT ATAATGTTTG GAGCAACATT 20636 |||| TGAG...... .......... .......... .......... .......... .......... 155 TTATGGGGCA GAGTAAGGAT TTCGAGTTTA TAAGTTCATG ATTCTAGAAG AAGCAACTTA 20576 .......... .......... .......... .......... .......... .......... 155 GAGTATTGTG AATAAATTAT TTATATATAT TAAGTAGATT CTTACATGAG TTCCACTGAA 20516 .......... .......... .......... .......... .......... .......... 155 CCTGTAGTGT AAGCAGACCT GTAGCTACAC TCTTGTTTTT TATTTATATT AGGCCATTAC 20456 .......... .......... .......... .......... .......... .......... 155 AAGCTACTCA ATGCGCCAGT AATGATTCTC TGTCTTGTGC CAATGTTAGG ATAGACACTG 20396 .......... .......... .......... .......... .......... .......... 155 ACCATCATTG ACAAAAGCTA AGTTTGATAG CAAAAGGCAC AACTTTATTT CTTAACGAAG 20336 .......... .......... .......... .......... .......... .......... 155 TGCACCGAGC AAGCGCCATG TTCGATCATG ACTACGACCC GAACCGCCTA GCCCCTCGTG 20276 .......... .......... .......... .......... .......... .......... 155 GGCCTTGCCA TAGGCAGGTT GTTACCATTA TCCAACAATC TCCCTCCCAA CACCTGCCTC 20216 .......... .......... .......... .......... .......... .......... 155 ATGCAGAATG TAGCTTTTGC AAATCAAACT CATGACCTTG GCTCTGATAC TACTTGTTAG 20156 .......... .......... .......... .......... .......... .......... 155 GATCAAGCGA TTATCATCAT GCCAAAAGCT ATAGATTTTG GCATAATGGT AAGCACACGG 20096 .......... .......... .......... .......... .......... .......... 155 TCAACAACCA AGTACGTGGA AATTTTTGTG TGGATAGAGA GTTGAATCTA AGATGTACCA 20036 .......... .......... .......... .......... .......... .......... 155 CTTGATAACA TGTTAAAATT GATATTTTCA CTTCATATTA ATCTACTAGA AAAGGACATT 19976 .......... .......... .......... .......... .......... .......... 155 TTAGTTATGA CTCCCTTCAT TTCAATTTAT TTATCCTACT TCCTTTTTTA ATCCGTTTGA 19916 .......... .......... .......... .......... .......... .......... 155 AAAAGAATGT CTTTTTTTTT CTTTTTGACA ACTTTAATTA TAGCTTTCCA GATAACATGG 19856 .......... .......... .......... .......... .......... .......... 155 TTAAGACTGA AAGATTAATG AACAATTTAA TACATTTACG CATCTTTAGT TAAGAGTACA 19796 .......... .......... .......... .......... .......... .......... 155 AGAATCAAAG TCTTTTGTAT GCCGTGCCAA GTCAAAATCA AATAAACAAA TTGCAATGGA 19736 .......... .......... .......... .......... .......... .......... 155 GAGGGTATAT ATTAGGTCTT CTACAATTTG TGGAGTAGTC AATAAGACAT CTTTGTACTC 19676 .......... .......... .......... .......... .......... .......... 155 TTTAATTTTG TTATGGATGC AAATGTAATG CATATCTTTC TCTTATATGT TCTTTTCGGT 19616 .......... .......... .......... .......... .......... .......... 155 CCTGATCATA GTCACGAGTG ATTCCGGATA CAGTGGAAGG GCTTGTGGAG TTTTTTCTTG 19556 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TCACGAGTG ATTCCGGATA CAGTGGAAGG GCTTGTGGAG TTTTTTCTTG 204 ACACTGAAGC TCAAGAGATT GAATTTGAGA TTGCAAGAAT GAGACCACGG TGAGTTATCT 19496 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACACTGAAGC TCAAGAGATT GAATTTGAGA TTGCAAGAAT GAGACCACG. .......... 253 ACTCTCCAAT GTCACAGCTC AGGTGGCCAA AATTTACTGT TCTGGCTTCA AAGCCAGAAA 19436 .......... .......... .......... .......... .......... .......... 253 ATGCTATAAG TTGTTTGAAT CTTCGCGGCA TTAGTTCAGA TTCAGCTCTG ATAGGTTATT 19376 .......... .......... .......... .......... .......... .......... 253 AAACAGTCGA GCATTTAAAG TTGCGACCTT TTGCTTTTGA TCATTCTGTG ATCATGCACA 19316 .......... .......... .......... .......... .......... .......... 253 TGTATTTCGA GTCCGTATTT TGTAAACTTG TGCAGAAAAG CAAAAAGCTA TAAAAATATA 19256 .......... .......... .......... .......... .......... .......... 253 GACTTCATAT AAAGATCAAA TTTTTGCCTC TTAACAAGAT ATGAGTATTT CTTTATTAAT 19196 .......... .......... .......... .......... .......... .......... 253 GGCCATTTTC TTGACATTTA TGTTGTTATC AAAATTTGAG AAAGTATTGG TACCTCACCC 19136 .......... .......... .......... .......... .......... .......... 253 AATTTGAAGT TTGCAAACAT TTTCTAGAGG AACTGGGACA AGACTTTTAT AACATCAAAT 19076 .......... .......... .......... .......... .......... .......... 253 TGCATGGGTT TCTTGTCTGT CCCTACTATA GTTTTTATCT TCTGTACCTG AAAACTTCTA 19016 .......... .......... .......... .......... .......... .......... 253 ACATATCTTA GTTTGCAGAT TGAACAAAGA ATTCTTTGAC CATCTGCAAG TCGAACTTGG 18956 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT TGAACAAAGA ATTCTTTGAC CATCTGCAAG TCGAACTTGG 295 AAAGCTGCGT TTTTCTGTAA ACAAAACTCA GGTTCTTACT GAAAATTTGG TTGATTTAGT 18896 |||||||||| |||||||||| |||||||||| | AAAGCTGCGT TTTTCTGTAA ACAAAACTCA G......... .......... .......... 326 GTGAGACAGA TATGTTAATG AAATGATACC GACCATGATA TTTTCACAGG CTGTGGAAGA 18836 | |||||||||| .......... .......... .......... .......... .........G CTGTGGAAGA 337 CAGATTATTT GAACTGGAAG CACTGCAAAA GGCCCTGCAA GAAGCAACAG GTCTGATAAA 18776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATTATTT GAACTGGAAG CACTGCAAAA GGCCCTGCAA GAAGCAACAG .......... 387 TTGATTTTTT AGATTGCTCT TTGATTAGAT ATTTCCAGAC TCTTACATGG AAATGAGTAT 18716 .......... .......... .......... .......... .......... .......... 387 GGGTATATGA GAAGATCTAG AAGTCGAATT CTGCATCATC TAATTCTTAA GTTTTGGAGA 18656 .......... .......... .......... .......... .......... .......... 387 AACATAGGAG TACATATGTG GTTGTGGAGA CACGACTAAC AAGTGCATAG AATAATATGC 18596 .......... .......... .......... .......... .......... .......... 387 ATATATATTT TAGTAATATC ACATATATCG CACATTAACA AAGTTTTCTT ATCCTTATAC 18536 .......... .......... .......... .......... .......... .......... 387 AAAAATAAGA GAATCTAGGT AACCTATGCT TCTCAACAGT AGACTCAGCT GCAGTTGTAG 18476 .......... .......... .......... .......... .......... .......... 387 TCAGCATACC ATGTGAATTG GCCATTTCTG AGTGTGTATC CTGCATCACA TAACATGGGT 18416 .......... .......... .......... .......... .......... .......... 387 TAGAAGGGGG CGGGATGGGT TTTATTGAGA TACGCAACAT AGGCCACGTT CCACGGTCTC 18356 .......... .......... .......... .......... .......... .......... 387 ACATGCAGTT GAGGTCTTGA GGATGAAGTC TCAATTATAA GTTATCTTGT AGAGCAATTC 18296 .......... .......... .......... .......... .......... .......... 387 TGACATCCTG CTGTATGATT TTTCTTTTTC CTGCAGAAGC CTATGATAAA TTACAAGCAG 18236 |||| |||||||||| |||||||||| .......... .......... .......... ......AAGC CTATGATAAA TTACAAGCAG 411 ATCTTGTAGC AACAAAGAAG AACCTAACTG AGATTTTGAC TTCAAAGGAT GTCAAGGCTA 18176 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ATCTTGTAGC AACAAAGAAG AACCTAACTG AGATTNTGAC TTCAAAGGAT GTCAAGGCTA 471 CTGTATGTGA TAGTTTCTAA ATTCTGCTGC TTCTTTTATA TGTGGGTGTG GTTTGTATAT 18116 || CT........ .......... .......... .......... .......... .......... 473 TCTCTTAGCC TTGTTGCTGA CTTGGGTTGT TCCGTTTTCT CGAGCAGCTT TTGGATTTGG 18056 ||| |||||||||| .......... .......... .......... .......... .......CTT TTGGATTTGG 486 TTGAGAGG-A ATGCGCTGAA TAGACCCTTG TTGACGCTTC TTGATGAAAA CATTGCAACT 17997 |||||||| | |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TTGAGAGGAA ATGCGCTG-A TAGACCCTTG TTGACGCTTC TTGATGAAAA CATTGCAACT 545 GCACA-TAGT GTTAACCAGG TGAGACAAGC AAATTCCACA CAATGTAGAT AGAAGTTCTG 17938 ||||| |||| ||||||||| GCACATTAGT GTTAACCAG. .......... .......... .......... .......... 564 TGGGAGTGAT GATGCATATT TTTGAAGATA TCGGTGCAAA CGTCACATAA ATTAACTGTA 17878 .......... .......... .......... .......... .......... .......... 564 ACTTCAGTCG AAAAGTGTGA TTCGAAAAGG AAAAAGAAGT AACTTTTCGA ACTGAGCATC 17818 .......... .......... .......... .......... .......... .......... 564 AGTAACTGAC ATAAGAATTC ACACAATTTT CTAAATTTTC AGTGTCTTTC AAGGTTAAGC 17758 .......... .......... .......... .......... .......... .......... 564 TGGTTTTATC CTAATAGTAA TATAATGAAC AACATAAAAT CATATACTGA AAGCACACCT 17698 .......... .......... .......... .......... .......... .......... 564 TGTCTGGGTT GAAAATCTAC TTTTTTTTTC TTGATAAGGT ACTTTTCTGG GTTGAGAATT 17638 .......... .......... .......... .......... .......... .......... 564 GGTTGGATAG GCACCAACGG TGTGGCCTAT TGGTCAATAG AGTAGGTTGA GAACTATGAG 17578 .......... .......... .......... .......... .......... .......... 564 GTCTCATGTT CAAATTTCTG TAGAGATAAA AATTTCTTCC AATTTGTCTT AGTCTTGGTG 17518 .......... .......... .......... .......... .......... .......... 564 GACAGTTACA GGTACCTATT GTTGTTGTCA TGTATCTCAT AGAATTAGTC AAGGTGGGCC 17458 .......... .......... .......... .......... .......... .......... 564 GAAAGCTGGC CCGGATACCA TGGTCATCAA AAAAAGAAAA AGAATTGGTT GGGGTAGAAA 17398 .......... .......... .......... .......... .......... .......... 564 TTGTGAGGCA GCATCTATTA AATGTTCCTC ATATCATGTA GTGGCAAGTG AATTGCCAGT 17338 .......... .......... .......... .......... .......... .......... 564 ATCAGCTTAC GACATTCCTG AGCAGTCTTA CAATCTTTGT AGTGAAGTTT ATAGCCAATC 17278 .......... .......... .......... .......... .......... .......... 564 AATTGTCAAT CTTTGTTCCG TAAAAGGAGA CACCGGAATC TCTGAGTTAC ATGTAGAATT 17218 .......... .......... .......... .......... .......... .......... 564 TCCTATCATT TCTTTGTTAG TTTATCATTG TTTAGACTAA TTATGATAAA GTTGAACGGT 17158 .......... .......... .......... .......... .......... .......... 564 TTTCCTTCAC TCAACTCTTT TCTGGGGTCT GATAGTTTCT CCACCACATC TTTTGGGAAT 17098 .......... .......... .......... .......... .......... .......... 564 ATATCTGGCA AAATATCTTT CATTTACAAA TTACATAGAT GTACAAAGAG CAGAAAATTA 17038 .......... .......... .......... .......... .......... .......... 564 TTTCTGAATT TTCCAATTGC ACTCCACATA ACTCTTATGA AAATGGACAT TCAAGTTCAA 16978 .......... .......... .......... .......... .......... .......... 564 ACTTAACTAG TTCTGTTATC TTCACGTTTG GCTATTTTTC TTTTTGAATC TTCTCTTCGT 16918 .......... .......... .......... .......... .......... .......... 564 CGCTTATAAG AGAAAAAGAA ACATCCATAA TTTAAATTGA ACGTGATAAG TACCTTTATG 16858 .......... .......... .......... .......... .......... .......... 564 CTTTTGTTTG AGTCTTCTTA TGCACTAGTT GAGTATGGTC AATTATTGTT CAAGTGGATT 16798 .......... .......... .......... .......... .......... .......... 564 GAGCATTGCT TAAGGAAGAA ATTATTCTTT GGGACGATGA ATTCAATCAA ATAATTGAAC 16738 .......... .......... .......... .......... .......... .......... 564 TGCATAAGCC GATTACTCTC GTGAAAGTTA TTTTCTGGAT AAATAAAGCC ACAACGGATT 16678 .......... .......... .......... .......... .......... .......... 564 TTAGCTCATG GAGTTCATCT AATGCATAAA AACATGAAAA TGATTACTAG TAGCGTTAAG 16618 .......... .......... .......... .......... .......... .......... 564 AACTGAAAAG ATGAGCAAGT AGATGTAAGA TGAACTGTTC AGAGATGCTA TAATATGCAC 16558 .......... .......... .......... .......... .......... .......... 564 ACGCGTTGAG TGTCCACAAT GCCTGTCTAA TATTTTTTTC AGATACTCTG TGAATGTTCT 16498 .......... .......... .......... .......... .......... .......... 564 TCATAAACCT GATAGATGAT AAAATAGGAT TTTGTAGTAA CTTCTCTAGA TGTCCAGGCT 16438 .......... .......... .......... .......... .......... .......... 564 TGTTAATCTC TGGTTAGAGT TTGACATTTA CTTGGATACA CTTTAAAATA TCTCTAATCA 16378 .......... .......... .......... .......... .......... .......... 564 TATGTGTTCC TTTCCGATGG ATGTGTAAAA GCTTGACAAT GGCTACATGT CAACACCATT 16318 .......... .......... .......... .......... .......... .......... 564 ATTGTAATTT ATGGGTGCAT AATTTTTTAG TGAAAAATAA TGATCACTTT GCTTAGAAGC 16258 .......... .......... .......... .......... .......... .......... 564 TTTAACTATA CTACTGTCTT GAATTTGAAC TGATCTTCTT TTGGTAACGC AGAAACAAGC 16198 |||||||| .......... .......... .......... .......... .......... ..AAACAAGC 572 AGCAGAATAC ATGGAAAAGC TGAGAG-GAC TTGTTCTGAA GTACCTAACA GTATAGATTC 16139 |||||||||| |||||||||| |||||| ||| ||| |||||| |||||||||| |||||||||| AGCAGAATAC ATGGAAAAGC TGAGAGGGAC TTG-TCTGAA GTACCTAACA GTATAGATTC 631 CATCTCAAGG CTATCAAATG CTTGTCTCAT GTTTATACAG AGAAATG 16092 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CATCTCAAGG CTATCAAATG CTTGTCTCAT GTTTATACAG AGAAATG 678 hqPGS_C08HBa0060C12.1-_SGN-E340777+ (20935 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 16092) ******************************************************************************** EST sequence 119 -strand 359 n (File: SGN-E226917-) 1 AAGCAGCAGA ATACATGGAA AAGCTGAGAG GACTTGTTCT AAAGTACCTA ACAGTATAGA 61 TTCCATCTCA AGGCTATCAA ATGCTTGTCT CATGTTTATA CAGAAAAATG GTGAGAATTT 121 CTGGTTATTT ATATTTTACT AATATTGTAG TATATTACAA AATTTTGTAG GAATATGAAC 181 TTAGAATGGA TCCCTTTAAT AACAATAAGA AAGTATCCCA TCATTTGTGA AAAGAATGAG 241 TACACCATGT AACTGAAAAT CCATGTTCTT TCTTCCTTGT CTGTTGGAAA GTGTGAAATC 301 CTATTTTTAC TGAAAGTGAA AAAAAAAAAA AAAAAACCAA AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 16811 to 14883): Exon 1 16201 15883 ( 319 n); cDNA 1 319 ( 319 n); score: 0.994 PPA cDNA 320 337 MATCH C08HBa0060C12.1- SGN-E226917- 0.994 319 0.889 C PGS_C08HBa0060C12.1-_SGN-E226917- (16201 15883) Alignment (genomic DNA sequence = upper lines): AAGCAGCAGA ATACATGGAA AAGCTGAGAG GACTTGTTCT GAAGTACCTA ACAGTATAGA 16142 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AAGCAGCAGA ATACATGGAA AAGCTGAGAG GACTTGTTCT AAAGTACCTA ACAGTATAGA 60 TTCCATCTCA AGGCTATCAA ATGCTTGTCT CATGTTTATA CAGAGAAATG GTGAGAATTT 16082 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TTCCATCTCA AGGCTATCAA ATGCTTGTCT CATGTTTATA CAGAAAAATG GTGAGAATTT 120 CTGGTTATTT ATATTTTACT AATATTGTAG TATATTACAA AATTTTGTAG GAATATGAAC 16022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTTATTT ATATTTTACT AATATTGTAG TATATTACAA AATTTTGTAG GAATATGAAC 180 TTAGAATGGA TCCCTTTAAT AACAATAAGA AAGTATCCCA TCATTTGTGA AAAGAATGAG 15962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAATGGA TCCCTTTAAT AACAATAAGA AAGTATCCCA TCATTTGTGA AAAGAATGAG 240 TACACCATGT AACTGAAAAT CCATGTTCTT TCTTCCTTGT CTGTTGGAAA GTGTGAAATC 15902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACCATGT AACTGAAAAT CCATGTTCTT TCTTCCTTGT CTGTTGGAAA GTGTGAAATC 300 CTATTTTTAC TGAAAGTGA 15883 |||||||||| ||||||||| CTATTTTTAC TGAAAGTGA 319 hqPGS_C08HBa0060C12.1-_SGN-E226917- (16201 15883) ******************************************************************************** EST sequence 314 +strand 706 n (File: SGN-E326217+) 1 TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 61 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 121 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG ATCCAGATGG 181 TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA GACGCCTTGA 241 GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA AAGAACGTCG 301 CAGAGTTCTT CGTGAGTCAC GAGTGATTCC GGATACAGTG GAAGGGCTTG TGGAGTTTTT 361 TCTTGACACT GAAGCTCAAG AGATTGAATT TGAGATTGCA AGAATGAGAC CACGATTGAA 421 CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG CTGCGTTTTT CTGTAAACAA 481 AACTCAGGCT GTGGAAGACA GATTATTTGA ACTGGAAGCA CTGCAAAAGG CCCTGCAAGA 541 AGCAACAGAA GCCTATGATA AATTACAAGC AGATCTTGTA GCAACAAAGA AGAACCTAAC 601 TGAGATTTTG ACTTCAAAGG ATGTCAAGGC TACTCTTTTG GATTTGGTTG AGAGGAATGC 661 GCTGAATAGA CCCTTGTTGA CGCTTCTTGA TGAAACATTG CAACTG Predicted gene structure (within gDNA segment 21696 to 17288): Exon 1 21096 20928 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 170 316 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 317 414 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 415 487 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 488 548 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 18259 18174 ( 86 n); cDNA 549 634 ( 86 n); score: 1.000 Intron 6 18173 18069 ( 105 n); Pd: 0.970 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 7 18068 17996 ( 73 n); cDNA 635 706 ( 72 n); score: 0.986 MATCH C08HBa0060C12.1- SGN-E326217+ 0.999 707 1.001 C PGS_C08HBa0060C12.1-_SGN-E326217+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17996) Alignment (genomic DNA sequence = upper lines): TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 21037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 60 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 20977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 120 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG TAATTTCTCT 20917 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGG. .......... 169 TCACTTCTGA AGCTCCTTTC AATTATAATT TTACAAGTGC ATTATAAAAG TGGTGAATTT 20857 .......... .......... .......... .......... .......... .......... 169 TTTTATTTGT AATTACAGGA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 20797 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 211 GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 20737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 271 CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAGGTAAT TTTTTGAAGT 20677 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAG..... .......... 316 TATCATCTTA TCGAAGAATT TATAATGTTT GGAGCAACAT TTTATGGGGC AGAGTAAGGA 20617 .......... .......... .......... .......... .......... .......... 316 TTTCGAGTTT ATAAGTTCAT GATTCTAGAA GAAGCAACTT AGAGTATTGT GAATAAATTA 20557 .......... .......... .......... .......... .......... .......... 316 TTTATATATA TTAAGTAGAT TCTTACATGA GTTCCACTGA ACCTGTAGTG TAAGCAGACC 20497 .......... .......... .......... .......... .......... .......... 316 TGTAGCTACA CTCTTGTTTT TTATTTATAT TAGGCCATTA CAAGCTACTC AATGCGCCAG 20437 .......... .......... .......... .......... .......... .......... 316 TAATGATTCT CTGTCTTGTG CCAATGTTAG GATAGACACT GACCATCATT GACAAAAGCT 20377 .......... .......... .......... .......... .......... .......... 316 AAGTTTGATA GCAAAAGGCA CAACTTTATT TCTTAACGAA GTGCACCGAG CAAGCGCCAT 20317 .......... .......... .......... .......... .......... .......... 316 GTTCGATCAT GACTACGACC CGAACCGCCT AGCCCCTCGT GGGCCTTGCC ATAGGCAGGT 20257 .......... .......... .......... .......... .......... .......... 316 TGTTACCATT ATCCAACAAT CTCCCTCCCA ACACCTGCCT CATGCAGAAT GTAGCTTTTG 20197 .......... .......... .......... .......... .......... .......... 316 CAAATCAAAC TCATGACCTT GGCTCTGATA CTACTTGTTA GGATCAAGCG ATTATCATCA 20137 .......... .......... .......... .......... .......... .......... 316 TGCCAAAAGC TATAGATTTT GGCATAATGG TAAGCACACG GTCAACAACC AAGTACGTGG 20077 .......... .......... .......... .......... .......... .......... 316 AAATTTTTGT GTGGATAGAG AGTTGAATCT AAGATGTACC ACTTGATAAC ATGTTAAAAT 20017 .......... .......... .......... .......... .......... .......... 316 TGATATTTTC ACTTCATATT AATCTACTAG AAAAGGACAT TTTAGTTATG ACTCCCTTCA 19957 .......... .......... .......... .......... .......... .......... 316 TTTCAATTTA TTTATCCTAC TTCCTTTTTT AATCCGTTTG AAAAAGAATG TCTTTTTTTT 19897 .......... .......... .......... .......... .......... .......... 316 TCTTTTTGAC AACTTTAATT ATAGCTTTCC AGATAACATG GTTAAGACTG AAAGATTAAT 19837 .......... .......... .......... .......... .......... .......... 316 GAACAATTTA ATACATTTAC GCATCTTTAG TTAAGAGTAC AAGAATCAAA GTCTTTTGTA 19777 .......... .......... .......... .......... .......... .......... 316 TGCCGTGCCA AGTCAAAATC AAATAAACAA ATTGCAATGG AGAGGGTATA TATTAGGTCT 19717 .......... .......... .......... .......... .......... .......... 316 TCTACAATTT GTGGAGTAGT CAATAAGACA TCTTTGTACT CTTTAATTTT GTTATGGATG 19657 .......... .......... .......... .......... .......... .......... 316 CAAATGTAAT GCATATCTTT CTCTTATATG TTCTTTTCGG TCCTGATCAT AGTCACGAGT 19597 |||||||| .......... .......... .......... .......... .......... ..TCACGAGT 324 GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 19537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 384 TGAATTTGAG ATTGCAAGAA TGAGACCACG GTGAGTTATC TACTCTCCAA TGTCACAGCT 19477 |||||||||| |||||||||| |||||||||| TGAATTTGAG ATTGCAAGAA TGAGACCACG .......... .......... .......... 414 CAGGTGGCCA AAATTTACTG TTCTGGCTTC AAAGCCAGAA AATGCTATAA GTTGTTTGAA 19417 .......... .......... .......... .......... .......... .......... 414 TCTTCGCGGC ATTAGTTCAG ATTCAGCTCT GATAGGTTAT TAAACAGTCG AGCATTTAAA 19357 .......... .......... .......... .......... .......... .......... 414 GTTGCGACCT TTTGCTTTTG ATCATTCTGT GATCATGCAC ATGTATTTCG AGTCCGTATT 19297 .......... .......... .......... .......... .......... .......... 414 TTGTAAACTT GTGCAGAAAA GCAAAAAGCT ATAAAAATAT AGACTTCATA TAAAGATCAA 19237 .......... .......... .......... .......... .......... .......... 414 ATTTTTGCCT CTTAACAAGA TATGAGTATT TCTTTATTAA TGGCCATTTT CTTGACATTT 19177 .......... .......... .......... .......... .......... .......... 414 ATGTTGTTAT CAAAATTTGA GAAAGTATTG GTACCTCACC CAATTTGAAG TTTGCAAACA 19117 .......... .......... .......... .......... .......... .......... 414 TTTTCTAGAG GAACTGGGAC AAGACTTTTA TAACATCAAA TTGCATGGGT TTCTTGTCTG 19057 .......... .......... .......... .......... .......... .......... 414 TCCCTACTAT AGTTTTTATC TTCTGTACCT GAAAACTTCT AACATATCTT AGTTTGCAGA 18997 | .......... .......... .......... .......... .......... .........A 415 TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 18937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 475 AACAAAACTC AGGTTCTTAC TGAAAATTTG GTTGATTTAG TGTGAGACAG ATATGTTAAT 18877 |||||||||| || AACAAAACTC AG........ .......... .......... .......... .......... 487 GAAATGATAC CGACCATGAT ATTTTCACAG GCTGTGGAAG ACAGATTATT TGAACTGGAA 18817 |||||||||| |||||||||| |||||||||| .......... .......... .......... GCTGTGGAAG ACAGATTATT TGAACTGGAA 517 GCACTGCAAA AGGCCCTGCA AGAAGCAACA GGTCTGATAA ATTGATTTTT TAGATTGCTC 18757 |||||||||| |||||||||| |||||||||| | GCACTGCAAA AGGCCCTGCA AGAAGCAACA G......... .......... .......... 548 TTTGATTAGA TATTTCCAGA CTCTTACATG GAAATGAGTA TGGGTATATG AGAAGATCTA 18697 .......... .......... .......... .......... .......... .......... 548 GAAGTCGAAT TCTGCATCAT CTAATTCTTA AGTTTTGGAG AAACATAGGA GTACATATGT 18637 .......... .......... .......... .......... .......... .......... 548 GGTTGTGGAG ACACGACTAA CAAGTGCATA GAATAATATG CATATATATT TTAGTAATAT 18577 .......... .......... .......... .......... .......... .......... 548 CACATATATC GCACATTAAC AAAGTTTTCT TATCCTTATA CAAAAATAAG AGAATCTAGG 18517 .......... .......... .......... .......... .......... .......... 548 TAACCTATGC TTCTCAACAG TAGACTCAGC TGCAGTTGTA GTCAGCATAC CATGTGAATT 18457 .......... .......... .......... .......... .......... .......... 548 GGCCATTTCT GAGTGTGTAT CCTGCATCAC ATAACATGGG TTAGAAGGGG GCGGGATGGG 18397 .......... .......... .......... .......... .......... .......... 548 TTTTATTGAG ATACGCAACA TAGGCCACGT TCCACGGTCT CACATGCAGT TGAGGTCTTG 18337 .......... .......... .......... .......... .......... .......... 548 AGGATGAAGT CTCAATTATA AGTTATCTTG TAGAGCAATT CTGACATCCT GCTGTATGAT 18277 .......... .......... .......... .......... .......... .......... 548 TTTTCTTTTT CCTGCAGAAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAACAAAGAA 18217 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......AAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAACAAAGAA 591 GAACCTAACT GAGATTTTGA CTTCAAAGGA TGTCAAGGCT ACTGTATGTG ATAGTTTCTA 18157 |||||||||| |||||||||| |||||||||| |||||||||| ||| GAACCTAACT GAGATTTTGA CTTCAAAGGA TGTCAAGGCT ACT....... .......... 634 AATTCTGCTG CTTCTTTTAT ATGTGGGTGT GGTTTGTATA TTCTCTTAGC CTTGTTGCTG 18097 .......... .......... .......... .......... .......... .......... 634 ACTTGGGTTG TTCCGTTTTC TCGAGCAGCT TTTGGATTTG GTTGAGAGGA ATGCGCTGAA 18037 || |||||||||| |||||||||| |||||||||| .......... .......... ........CT TTTGGATTTG GTTGAGAGGA ATGCGCTGAA 666 TAGACCCTTG TTGACGCTTC TTGATGAAAA CATTGCAACT G 17996 |||||||||| |||||||||| |||||| ||| |||||||||| | TAGACCCTTG TTGACGCTTC TTGATG-AAA CATTGCAACT G 706 hqPGS_C08HBa0060C12.1-_SGN-E326217+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17996) ******************************************************************************** EST sequence 351 +strand 645 n (File: SGN-E327899+) 1 TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 61 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 121 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG ATCCAGATGG 181 TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA GACGCCTTGA 241 GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA AAGAACGTCG 301 CAGAGTTCTT CGTGAGTCAC GAGTGATTCC GGATACAGTG GAAGGGCTTG TGGAGTTTTT 361 TCTTGACACT GAAGCTCAAG AGATTGAATT TGAGATTGCA AGAATGAGAC CACGATTGAA 421 CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG CTGCGTTTTT CTGTAAACAA 481 AACTCAGGCT GTGGAAGACA GATTATTTGA ACTGGAAGCA CTGCAAAAGG CCCTGCAAGA 541 AGCAACAGAA GCCTATGATA AATTACAAGC AGATCTTGTA GCAACAAAGA AGAACCTAAC 601 TGAGATTTTG ACTTCAAAGG ATGTCAAGGC TACTCTTTTT GGATT Predicted gene structure (within gDNA segment 21696 to 17454): Exon 1 21096 20928 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 170 316 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 317 414 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 415 487 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 488 548 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 18259 18174 ( 86 n); cDNA 549 634 ( 86 n); score: 1.000 Intron 6 18173 18069 ( 105 n); Pd: 0.970 (s: 1.00), Pa: 0.968 (s: 0) Exon 7 18068 18058 ( 11 n); cDNA 635 645 ( 11 n); score: 0.727 MATCH C08HBa0060C12.1- SGN-E327899+ 1.000 645 1.000 C PGS_C08HBa0060C12.1-_SGN-E327899+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 18058) Alignment (genomic DNA sequence = upper lines): TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 21037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 60 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 20977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 120 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG TAATTTCTCT 20917 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGG. .......... 169 TCACTTCTGA AGCTCCTTTC AATTATAATT TTACAAGTGC ATTATAAAAG TGGTGAATTT 20857 .......... .......... .......... .......... .......... .......... 169 TTTTATTTGT AATTACAGGA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 20797 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 211 GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 20737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 271 CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAGGTAAT TTTTTGAAGT 20677 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAG..... .......... 316 TATCATCTTA TCGAAGAATT TATAATGTTT GGAGCAACAT TTTATGGGGC AGAGTAAGGA 20617 .......... .......... .......... .......... .......... .......... 316 TTTCGAGTTT ATAAGTTCAT GATTCTAGAA GAAGCAACTT AGAGTATTGT GAATAAATTA 20557 .......... .......... .......... .......... .......... .......... 316 TTTATATATA TTAAGTAGAT TCTTACATGA GTTCCACTGA ACCTGTAGTG TAAGCAGACC 20497 .......... .......... .......... .......... .......... .......... 316 TGTAGCTACA CTCTTGTTTT TTATTTATAT TAGGCCATTA CAAGCTACTC AATGCGCCAG 20437 .......... .......... .......... .......... .......... .......... 316 TAATGATTCT CTGTCTTGTG CCAATGTTAG GATAGACACT GACCATCATT GACAAAAGCT 20377 .......... .......... .......... .......... .......... .......... 316 AAGTTTGATA GCAAAAGGCA CAACTTTATT TCTTAACGAA GTGCACCGAG CAAGCGCCAT 20317 .......... .......... .......... .......... .......... .......... 316 GTTCGATCAT GACTACGACC CGAACCGCCT AGCCCCTCGT GGGCCTTGCC ATAGGCAGGT 20257 .......... .......... .......... .......... .......... .......... 316 TGTTACCATT ATCCAACAAT CTCCCTCCCA ACACCTGCCT CATGCAGAAT GTAGCTTTTG 20197 .......... .......... .......... .......... .......... .......... 316 CAAATCAAAC TCATGACCTT GGCTCTGATA CTACTTGTTA GGATCAAGCG ATTATCATCA 20137 .......... .......... .......... .......... .......... .......... 316 TGCCAAAAGC TATAGATTTT GGCATAATGG TAAGCACACG GTCAACAACC AAGTACGTGG 20077 .......... .......... .......... .......... .......... .......... 316 AAATTTTTGT GTGGATAGAG AGTTGAATCT AAGATGTACC ACTTGATAAC ATGTTAAAAT 20017 .......... .......... .......... .......... .......... .......... 316 TGATATTTTC ACTTCATATT AATCTACTAG AAAAGGACAT TTTAGTTATG ACTCCCTTCA 19957 .......... .......... .......... .......... .......... .......... 316 TTTCAATTTA TTTATCCTAC TTCCTTTTTT AATCCGTTTG AAAAAGAATG TCTTTTTTTT 19897 .......... .......... .......... .......... .......... .......... 316 TCTTTTTGAC AACTTTAATT ATAGCTTTCC AGATAACATG GTTAAGACTG AAAGATTAAT 19837 .......... .......... .......... .......... .......... .......... 316 GAACAATTTA ATACATTTAC GCATCTTTAG TTAAGAGTAC AAGAATCAAA GTCTTTTGTA 19777 .......... .......... .......... .......... .......... .......... 316 TGCCGTGCCA AGTCAAAATC AAATAAACAA ATTGCAATGG AGAGGGTATA TATTAGGTCT 19717 .......... .......... .......... .......... .......... .......... 316 TCTACAATTT GTGGAGTAGT CAATAAGACA TCTTTGTACT CTTTAATTTT GTTATGGATG 19657 .......... .......... .......... .......... .......... .......... 316 CAAATGTAAT GCATATCTTT CTCTTATATG TTCTTTTCGG TCCTGATCAT AGTCACGAGT 19597 |||||||| .......... .......... .......... .......... .......... ..TCACGAGT 324 GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 19537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 384 TGAATTTGAG ATTGCAAGAA TGAGACCACG GTGAGTTATC TACTCTCCAA TGTCACAGCT 19477 |||||||||| |||||||||| |||||||||| TGAATTTGAG ATTGCAAGAA TGAGACCACG .......... .......... .......... 414 CAGGTGGCCA AAATTTACTG TTCTGGCTTC AAAGCCAGAA AATGCTATAA GTTGTTTGAA 19417 .......... .......... .......... .......... .......... .......... 414 TCTTCGCGGC ATTAGTTCAG ATTCAGCTCT GATAGGTTAT TAAACAGTCG AGCATTTAAA 19357 .......... .......... .......... .......... .......... .......... 414 GTTGCGACCT TTTGCTTTTG ATCATTCTGT GATCATGCAC ATGTATTTCG AGTCCGTATT 19297 .......... .......... .......... .......... .......... .......... 414 TTGTAAACTT GTGCAGAAAA GCAAAAAGCT ATAAAAATAT AGACTTCATA TAAAGATCAA 19237 .......... .......... .......... .......... .......... .......... 414 ATTTTTGCCT CTTAACAAGA TATGAGTATT TCTTTATTAA TGGCCATTTT CTTGACATTT 19177 .......... .......... .......... .......... .......... .......... 414 ATGTTGTTAT CAAAATTTGA GAAAGTATTG GTACCTCACC CAATTTGAAG TTTGCAAACA 19117 .......... .......... .......... .......... .......... .......... 414 TTTTCTAGAG GAACTGGGAC AAGACTTTTA TAACATCAAA TTGCATGGGT TTCTTGTCTG 19057 .......... .......... .......... .......... .......... .......... 414 TCCCTACTAT AGTTTTTATC TTCTGTACCT GAAAACTTCT AACATATCTT AGTTTGCAGA 18997 | .......... .......... .......... .......... .......... .........A 415 TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 18937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 475 AACAAAACTC AGGTTCTTAC TGAAAATTTG GTTGATTTAG TGTGAGACAG ATATGTTAAT 18877 |||||||||| || AACAAAACTC AG........ .......... .......... .......... .......... 487 GAAATGATAC CGACCATGAT ATTTTCACAG GCTGTGGAAG ACAGATTATT TGAACTGGAA 18817 |||||||||| |||||||||| |||||||||| .......... .......... .......... GCTGTGGAAG ACAGATTATT TGAACTGGAA 517 GCACTGCAAA AGGCCCTGCA AGAAGCAACA GGTCTGATAA ATTGATTTTT TAGATTGCTC 18757 |||||||||| |||||||||| |||||||||| | GCACTGCAAA AGGCCCTGCA AGAAGCAACA G......... .......... .......... 548 TTTGATTAGA TATTTCCAGA CTCTTACATG GAAATGAGTA TGGGTATATG AGAAGATCTA 18697 .......... .......... .......... .......... .......... .......... 548 GAAGTCGAAT TCTGCATCAT CTAATTCTTA AGTTTTGGAG AAACATAGGA GTACATATGT 18637 .......... .......... .......... .......... .......... .......... 548 GGTTGTGGAG ACACGACTAA CAAGTGCATA GAATAATATG CATATATATT TTAGTAATAT 18577 .......... .......... .......... .......... .......... .......... 548 CACATATATC GCACATTAAC AAAGTTTTCT TATCCTTATA CAAAAATAAG AGAATCTAGG 18517 .......... .......... .......... .......... .......... .......... 548 TAACCTATGC TTCTCAACAG TAGACTCAGC TGCAGTTGTA GTCAGCATAC CATGTGAATT 18457 .......... .......... .......... .......... .......... .......... 548 GGCCATTTCT GAGTGTGTAT CCTGCATCAC ATAACATGGG TTAGAAGGGG GCGGGATGGG 18397 .......... .......... .......... .......... .......... .......... 548 TTTTATTGAG ATACGCAACA TAGGCCACGT TCCACGGTCT CACATGCAGT TGAGGTCTTG 18337 .......... .......... .......... .......... .......... .......... 548 AGGATGAAGT CTCAATTATA AGTTATCTTG TAGAGCAATT CTGACATCCT GCTGTATGAT 18277 .......... .......... .......... .......... .......... .......... 548 TTTTCTTTTT CCTGCAGAAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAACAAAGAA 18217 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......AAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAACAAAGAA 591 GAACCTAACT GAGATTTTGA CTTCAAAGGA TGTCAAGGCT ACTGTATGTG ATAGTTTCTA 18157 |||||||||| |||||||||| |||||||||| |||||||||| ||| GAACCTAACT GAGATTTTGA CTTCAAAGGA TGTCAAGGCT ACT....... .......... 634 AATTCTGCTG CTTCTTTTAT ATGTGGGTGT GGTTTGTATA TTCTCTTAGC CTTGTTGCTG 18097 .......... .......... .......... .......... .......... .......... 634 ACTTGGGTTG TTCCGTTTTC TCGAGCAGCT TTTGGATTT 18058 || ||| | || .......... .......... ........CT TTTTGGATT 645 hqPGS_C08HBa0060C12.1-_SGN-E327899+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 18058) ******************************************************************************** EST sequence 348 +strand 669 n (File: SGN-E254387+) 1 TTCTAACGGA TAAAGCACCG CGAAACTAAC TGAACTCAAT AACCAGTCAT TCAAAAGCTC 61 TCAAAAACGG CCAACAATGG CCGCAGCATT CAGCAGCAGC TTTACTAGTT CCGCCATTGG 121 AGCTCAATTC TACAGGCCCA AATTTGTAAA ACCCAAGACT TTTGTAAACA CAATTCGCTG 181 TGCTGGTAGA CTAGAATGGG ATCCAGATGG TTTATTGGGT CCGCCTCAAA CGGGTCATAT 241 AGCCCGACTC GAGTTCCAGA GACGCCTTGA GAACGATGCT GCGGCCAGAG AAGAATTTGA 301 ACGGCAAGTT CGTGAAGAGA AAGAACGTCG CAGAGTTCTT CGTGAGTCAC GAGTGATTCC 361 GGATACAGTG GAAGGGCTTG TGGAGTTTTT TCTTGACACT GAAGCTCAAG AGATTGAATT 421 TGAGATTGCA AGAATGAGAC CACGATTGAA CAAAGAATTC TTTGACCATC TGCAAGTCGA 481 ACTTGGAAAG CTGCGTTTTT CTGTAAACAA AACTCAGGCT GTGGAAGACA GATTATTTGA 541 ACTGGAAGCA CTGCAAAAGG CCCTGCAAGA AGCAACAGAA GCCTATGATA AATTACAAGC 601 AGATCTTGTA GCAACAAAGA AGAACCTAAC TGAGATTTTG ACTTCAAAGG ATGTCAAGGC 661 TACTCTTTT Predicted gene structure (within gDNA segment 21726 to 17514): Exon 1 21126 20928 ( 199 n); cDNA 1 199 ( 199 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 200 346 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 347 444 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 445 517 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 518 578 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 18259 18174 ( 86 n); cDNA 579 664 ( 86 n); score: 1.000 Intron 6 18173 18069 ( 105 n); Pd: 0.970 (s: 1.00), Pa: 0.968 (s: 0) Exon 7 18068 18064 ( 5 n); cDNA 665 669 ( 5 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E254387+ 1.000 669 1.000 C PGS_C08HBa0060C12.1-_SGN-E254387+ (21126 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 18064) Alignment (genomic DNA sequence = upper lines): TTCTAACGGA TAAAGCACCG CGAAACTAAC TGAACTCAAT AACCAGTCAT TCAAAAGCTC 21067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAACGGA TAAAGCACCG CGAAACTAAC TGAACTCAAT AACCAGTCAT TCAAAAGCTC 60 TCAAAAACGG CCAACAATGG CCGCAGCATT CAGCAGCAGC TTTACTAGTT CCGCCATTGG 21007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAACGG CCAACAATGG CCGCAGCATT CAGCAGCAGC TTTACTAGTT CCGCCATTGG 120 AGCTCAATTC TACAGGCCCA AATTTGTAAA ACCCAAGACT TTTGTAAACA CAATTCGCTG 20947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCAATTC TACAGGCCCA AATTTGTAAA ACCCAAGACT TTTGTAAACA CAATTCGCTG 180 TGCTGGTAGA CTAGAATGGG TAATTTCTCT TCACTTCTGA AGCTCCTTTC AATTATAATT 20887 |||||||||| ||||||||| TGCTGGTAGA CTAGAATGG. .......... .......... .......... .......... 199 TTACAAGTGC ATTATAAAAG TGGTGAATTT TTTTATTTGT AATTACAGGA TCCAGATGGT 20827 || |||||||||| .......... .......... .......... .......... ........GA TCCAGATGGT 211 TTATTGGGTC CGCCTCAAAC GGGTCATATA GCCCGACTCG AGTTCCAGAG ACGCCTTGAG 20767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGGGTC CGCCTCAAAC GGGTCATATA GCCCGACTCG AGTTCCAGAG ACGCCTTGAG 271 AACGATGCTG CGGCCAGAGA AGAATTTGAA CGGCAAGTTC GTGAAGAGAA AGAACGTCGC 20707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGATGCTG CGGCCAGAGA AGAATTTGAA CGGCAAGTTC GTGAAGAGAA AGAACGTCGC 331 AGAGTTCTTC GTGAGGTAAT TTTTTGAAGT TATCATCTTA TCGAAGAATT TATAATGTTT 20647 |||||||||| ||||| AGAGTTCTTC GTGAG..... .......... .......... .......... .......... 346 GGAGCAACAT TTTATGGGGC AGAGTAAGGA TTTCGAGTTT ATAAGTTCAT GATTCTAGAA 20587 .......... .......... .......... .......... .......... .......... 346 GAAGCAACTT AGAGTATTGT GAATAAATTA TTTATATATA TTAAGTAGAT TCTTACATGA 20527 .......... .......... .......... .......... .......... .......... 346 GTTCCACTGA ACCTGTAGTG TAAGCAGACC TGTAGCTACA CTCTTGTTTT TTATTTATAT 20467 .......... .......... .......... .......... .......... .......... 346 TAGGCCATTA CAAGCTACTC AATGCGCCAG TAATGATTCT CTGTCTTGTG CCAATGTTAG 20407 .......... .......... .......... .......... .......... .......... 346 GATAGACACT GACCATCATT GACAAAAGCT AAGTTTGATA GCAAAAGGCA CAACTTTATT 20347 .......... .......... .......... .......... .......... .......... 346 TCTTAACGAA GTGCACCGAG CAAGCGCCAT GTTCGATCAT GACTACGACC CGAACCGCCT 20287 .......... .......... .......... .......... .......... .......... 346 AGCCCCTCGT GGGCCTTGCC ATAGGCAGGT TGTTACCATT ATCCAACAAT CTCCCTCCCA 20227 .......... .......... .......... .......... .......... .......... 346 ACACCTGCCT CATGCAGAAT GTAGCTTTTG CAAATCAAAC TCATGACCTT GGCTCTGATA 20167 .......... .......... .......... .......... .......... .......... 346 CTACTTGTTA GGATCAAGCG ATTATCATCA TGCCAAAAGC TATAGATTTT GGCATAATGG 20107 .......... .......... .......... .......... .......... .......... 346 TAAGCACACG GTCAACAACC AAGTACGTGG AAATTTTTGT GTGGATAGAG AGTTGAATCT 20047 .......... .......... .......... .......... .......... .......... 346 AAGATGTACC ACTTGATAAC ATGTTAAAAT TGATATTTTC ACTTCATATT AATCTACTAG 19987 .......... .......... .......... .......... .......... .......... 346 AAAAGGACAT TTTAGTTATG ACTCCCTTCA TTTCAATTTA TTTATCCTAC TTCCTTTTTT 19927 .......... .......... .......... .......... .......... .......... 346 AATCCGTTTG AAAAAGAATG TCTTTTTTTT TCTTTTTGAC AACTTTAATT ATAGCTTTCC 19867 .......... .......... .......... .......... .......... .......... 346 AGATAACATG GTTAAGACTG AAAGATTAAT GAACAATTTA ATACATTTAC GCATCTTTAG 19807 .......... .......... .......... .......... .......... .......... 346 TTAAGAGTAC AAGAATCAAA GTCTTTTGTA TGCCGTGCCA AGTCAAAATC AAATAAACAA 19747 .......... .......... .......... .......... .......... .......... 346 ATTGCAATGG AGAGGGTATA TATTAGGTCT TCTACAATTT GTGGAGTAGT CAATAAGACA 19687 .......... .......... .......... .......... .......... .......... 346 TCTTTGTACT CTTTAATTTT GTTATGGATG CAAATGTAAT GCATATCTTT CTCTTATATG 19627 .......... .......... .......... .......... .......... .......... 346 TTCTTTTCGG TCCTGATCAT AGTCACGAGT GATTCCGGAT ACAGTGGAAG GGCTTGTGGA 19567 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TCACGAGT GATTCCGGAT ACAGTGGAAG GGCTTGTGGA 384 GTTTTTTCTT GACACTGAAG CTCAAGAGAT TGAATTTGAG ATTGCAAGAA TGAGACCACG 19507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTTCTT GACACTGAAG CTCAAGAGAT TGAATTTGAG ATTGCAAGAA TGAGACCACG 444 GTGAGTTATC TACTCTCCAA TGTCACAGCT CAGGTGGCCA AAATTTACTG TTCTGGCTTC 19447 .......... .......... .......... .......... .......... .......... 444 AAAGCCAGAA AATGCTATAA GTTGTTTGAA TCTTCGCGGC ATTAGTTCAG ATTCAGCTCT 19387 .......... .......... .......... .......... .......... .......... 444 GATAGGTTAT TAAACAGTCG AGCATTTAAA GTTGCGACCT TTTGCTTTTG ATCATTCTGT 19327 .......... .......... .......... .......... .......... .......... 444 GATCATGCAC ATGTATTTCG AGTCCGTATT TTGTAAACTT GTGCAGAAAA GCAAAAAGCT 19267 .......... .......... .......... .......... .......... .......... 444 ATAAAAATAT AGACTTCATA TAAAGATCAA ATTTTTGCCT CTTAACAAGA TATGAGTATT 19207 .......... .......... .......... .......... .......... .......... 444 TCTTTATTAA TGGCCATTTT CTTGACATTT ATGTTGTTAT CAAAATTTGA GAAAGTATTG 19147 .......... .......... .......... .......... .......... .......... 444 GTACCTCACC CAATTTGAAG TTTGCAAACA TTTTCTAGAG GAACTGGGAC AAGACTTTTA 19087 .......... .......... .......... .......... .......... .......... 444 TAACATCAAA TTGCATGGGT TTCTTGTCTG TCCCTACTAT AGTTTTTATC TTCTGTACCT 19027 .......... .......... .......... .......... .......... .......... 444 GAAAACTTCT AACATATCTT AGTTTGCAGA TTGAACAAAG AATTCTTTGA CCATCTGCAA 18967 | |||||||||| |||||||||| |||||||||| .......... .......... .........A TTGAACAAAG AATTCTTTGA CCATCTGCAA 475 GTCGAACTTG GAAAGCTGCG TTTTTCTGTA AACAAAACTC AGGTTCTTAC TGAAAATTTG 18907 |||||||||| |||||||||| |||||||||| |||||||||| || GTCGAACTTG GAAAGCTGCG TTTTTCTGTA AACAAAACTC AG........ .......... 517 GTTGATTTAG TGTGAGACAG ATATGTTAAT GAAATGATAC CGACCATGAT ATTTTCACAG 18847 .......... .......... .......... .......... .......... .......... 517 GCTGTGGAAG ACAGATTATT TGAACTGGAA GCACTGCAAA AGGCCCTGCA AGAAGCAACA 18787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTGGAAG ACAGATTATT TGAACTGGAA GCACTGCAAA AGGCCCTGCA AGAAGCAACA 577 GGTCTGATAA ATTGATTTTT TAGATTGCTC TTTGATTAGA TATTTCCAGA CTCTTACATG 18727 | G......... .......... .......... .......... .......... .......... 578 GAAATGAGTA TGGGTATATG AGAAGATCTA GAAGTCGAAT TCTGCATCAT CTAATTCTTA 18667 .......... .......... .......... .......... .......... .......... 578 AGTTTTGGAG AAACATAGGA GTACATATGT GGTTGTGGAG ACACGACTAA CAAGTGCATA 18607 .......... .......... .......... .......... .......... .......... 578 GAATAATATG CATATATATT TTAGTAATAT CACATATATC GCACATTAAC AAAGTTTTCT 18547 .......... .......... .......... .......... .......... .......... 578 TATCCTTATA CAAAAATAAG AGAATCTAGG TAACCTATGC TTCTCAACAG TAGACTCAGC 18487 .......... .......... .......... .......... .......... .......... 578 TGCAGTTGTA GTCAGCATAC CATGTGAATT GGCCATTTCT GAGTGTGTAT CCTGCATCAC 18427 .......... .......... .......... .......... .......... .......... 578 ATAACATGGG TTAGAAGGGG GCGGGATGGG TTTTATTGAG ATACGCAACA TAGGCCACGT 18367 .......... .......... .......... .......... .......... .......... 578 TCCACGGTCT CACATGCAGT TGAGGTCTTG AGGATGAAGT CTCAATTATA AGTTATCTTG 18307 .......... .......... .......... .......... .......... .......... 578 TAGAGCAATT CTGACATCCT GCTGTATGAT TTTTCTTTTT CCTGCAGAAG CCTATGATAA 18247 ||| |||||||||| .......... .......... .......... .......... .......AAG CCTATGATAA 591 ATTACAAGCA GATCTTGTAG CAACAAAGAA GAACCTAACT GAGATTTTGA CTTCAAAGGA 18187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACAAGCA GATCTTGTAG CAACAAAGAA GAACCTAACT GAGATTTTGA CTTCAAAGGA 651 TGTCAAGGCT ACTGTATGTG ATAGTTTCTA AATTCTGCTG CTTCTTTTAT ATGTGGGTGT 18127 |||||||||| ||| TGTCAAGGCT ACT....... .......... .......... .......... .......... 664 GGTTTGTATA TTCTCTTAGC CTTGTTGCTG ACTTGGGTTG TTCCGTTTTC TCGAGCAGCT 18067 || .......... .......... .......... .......... .......... ........CT 666 TTT 18064 ||| TTT 669 hqPGS_C08HBa0060C12.1-_SGN-E254387+ (21126 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 18064) ******************************************************************************** EST sequence 398 +strand 699 n (File: SGN-E344757+) 1 ATAGGAAGGA AAATTGTAGA TAAGGGTGTG CGCATTTCTA ACGGATAAAG CACCGCGAAA 61 CTAACTGAAC TCAATAACCA GTCATTCAAA AGCTCTCAAA AACGGCCAAC AATGGCCGCA 121 GCATTCAGCA GCAGCTTTAC TAGTTCCGCC ATTGGAGCTC AATTCTACAG GCCCAAATTT 181 GTAAAACCCA AGACTTTTGT AAACACAATT CGCTGTGCTG GTAGACTAGA ATGGGATCCA 241 GATGGTTTAT TGGGTCCGCC TCAAACGGGT CATATAGCCC GACTCGAGTT CCAGAGACGC 301 CTTGAGAACG ATGCTGCGGC CAGAGAAGAA TTTGAACGGC AAGTTCGTGA AGAGAAAGAA 361 CGTCGCAGAG TTCTTCGTGA GTCACGAGTG ATTCCGGATA CAGTGGAAGG GCTTGTGGAG 421 TTTTTTCTTG ACACTGAAGC TCAAGAGATT GAATTTGAGA TTGCAAGAAT GAGACCACGA 481 TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 541 AACAAAACTC AGGCTGTGGA AGACAGATTA TTTGAACTGG AAGCACTGCA AAAGGCCCTG 601 CAAGAAGCAA CAGAAGCCTA TGATAAATTA CAGCAGATCT TGTAGCAACA AAGAGAACCT 661 AACTGAGATT TTGACTTCAA AGATGTCAGG CTACTCTTT Predicted gene structure (within gDNA segment 21761 to 17409): Exon 1 21161 20928 ( 234 n); cDNA 1 234 ( 234 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 235 381 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 382 479 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 480 552 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 553 613 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 0.96) Exon 6 18259 18174 ( 86 n); cDNA 614 695 ( 82 n); score: 0.953 MATCH C08HBa0060C12.1- SGN-E344757+ 0.994 699 1.000 C PGS_C08HBa0060C12.1-_SGN-E344757+ (21161 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174) Alignment (genomic DNA sequence = upper lines): ATAGGAAGGA AAATTGTAGA TAAGGGTGTG CGCATTTCTA ACGGATAAAG CACCGCGAAA 21102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGAAGGA AAATTGTAGA TAAGGGTGTG CGCATTTCTA ACGGATAAAG CACCGCGAAA 60 CTAACTGAAC TCAATAACCA GTCATTCAAA AGCTCTCAAA AACGGCCAAC AATGGCCGCA 21042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACTGAAC TCAATAACCA GTCATTCAAA AGCTCTCAAA AACGGCCAAC AATGGCCGCA 120 GCATTCAGCA GCAGCTTTAC TAGTTCCGCC ATTGGAGCTC AATTCTACAG GCCCAAATTT 20982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTCAGCA GCAGCTTTAC TAGTTCCGCC ATTGGAGCTC AATTCTACAG GCCCAAATTT 180 GTAAAACCCA AGACTTTTGT AAACACAATT CGCTGTGCTG GTAGACTAGA ATGGGTAATT 20922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GTAAAACCCA AGACTTTTGT AAACACAATT CGCTGTGCTG GTAGACTAGA ATGG...... 234 TCTCTTCACT TCTGAAGCTC CTTTCAATTA TAATTTTACA AGTGCATTAT AAAAGTGGTG 20862 .......... .......... .......... .......... .......... .......... 234 AATTTTTTTA TTTGTAATTA CAGGATCCAG ATGGTTTATT GGGTCCGCCT CAAACGGGTC 20802 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GATCCAG ATGGTTTATT GGGTCCGCCT CAAACGGGTC 271 ATATAGCCCG ACTCGAGTTC CAGAGACGCC TTGAGAACGA TGCTGCGGCC AGAGAAGAAT 20742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAGCCCG ACTCGAGTTC CAGAGACGCC TTGAGAACGA TGCTGCGGCC AGAGAAGAAT 331 TTGAACGGCA AGTTCGTGAA GAGAAAGAAC GTCGCAGAGT TCTTCGTGAG GTAATTTTTT 20682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACGGCA AGTTCGTGAA GAGAAAGAAC GTCGCAGAGT TCTTCGTGAG .......... 381 GAAGTTATCA TCTTATCGAA GAATTTATAA TGTTTGGAGC AACATTTTAT GGGGCAGAGT 20622 .......... .......... .......... .......... .......... .......... 381 AAGGATTTCG AGTTTATAAG TTCATGATTC TAGAAGAAGC AACTTAGAGT ATTGTGAATA 20562 .......... .......... .......... .......... .......... .......... 381 AATTATTTAT ATATATTAAG TAGATTCTTA CATGAGTTCC ACTGAACCTG TAGTGTAAGC 20502 .......... .......... .......... .......... .......... .......... 381 AGACCTGTAG CTACACTCTT GTTTTTTATT TATATTAGGC CATTACAAGC TACTCAATGC 20442 .......... .......... .......... .......... .......... .......... 381 GCCAGTAATG ATTCTCTGTC TTGTGCCAAT GTTAGGATAG ACACTGACCA TCATTGACAA 20382 .......... .......... .......... .......... .......... .......... 381 AAGCTAAGTT TGATAGCAAA AGGCACAACT TTATTTCTTA ACGAAGTGCA CCGAGCAAGC 20322 .......... .......... .......... .......... .......... .......... 381 GCCATGTTCG ATCATGACTA CGACCCGAAC CGCCTAGCCC CTCGTGGGCC TTGCCATAGG 20262 .......... .......... .......... .......... .......... .......... 381 CAGGTTGTTA CCATTATCCA ACAATCTCCC TCCCAACACC TGCCTCATGC AGAATGTAGC 20202 .......... .......... .......... .......... .......... .......... 381 TTTTGCAAAT CAAACTCATG ACCTTGGCTC TGATACTACT TGTTAGGATC AAGCGATTAT 20142 .......... .......... .......... .......... .......... .......... 381 CATCATGCCA AAAGCTATAG ATTTTGGCAT AATGGTAAGC ACACGGTCAA CAACCAAGTA 20082 .......... .......... .......... .......... .......... .......... 381 CGTGGAAATT TTTGTGTGGA TAGAGAGTTG AATCTAAGAT GTACCACTTG ATAACATGTT 20022 .......... .......... .......... .......... .......... .......... 381 AAAATTGATA TTTTCACTTC ATATTAATCT ACTAGAAAAG GACATTTTAG TTATGACTCC 19962 .......... .......... .......... .......... .......... .......... 381 CTTCATTTCA ATTTATTTAT CCTACTTCCT TTTTTAATCC GTTTGAAAAA GAATGTCTTT 19902 .......... .......... .......... .......... .......... .......... 381 TTTTTTCTTT TTGACAACTT TAATTATAGC TTTCCAGATA ACATGGTTAA GACTGAAAGA 19842 .......... .......... .......... .......... .......... .......... 381 TTAATGAACA ATTTAATACA TTTACGCATC TTTAGTTAAG AGTACAAGAA TCAAAGTCTT 19782 .......... .......... .......... .......... .......... .......... 381 TTGTATGCCG TGCCAAGTCA AAATCAAATA AACAAATTGC AATGGAGAGG GTATATATTA 19722 .......... .......... .......... .......... .......... .......... 381 GGTCTTCTAC AATTTGTGGA GTAGTCAATA AGACATCTTT GTACTCTTTA ATTTTGTTAT 19662 .......... .......... .......... .......... .......... .......... 381 GGATGCAAAT GTAATGCATA TCTTTCTCTT ATATGTTCTT TTCGGTCCTG ATCATAGTCA 19602 ||| .......... .......... .......... .......... .......... .......TCA 384 CGAGTGATTC CGGATACAGT GGAAGGGCTT GTGGAGTTTT TTCTTGACAC TGAAGCTCAA 19542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGTGATTC CGGATACAGT GGAAGGGCTT GTGGAGTTTT TTCTTGACAC TGAAGCTCAA 444 GAGATTGAAT TTGAGATTGC AAGAATGAGA CCACGGTGAG TTATCTACTC TCCAATGTCA 19482 |||||||||| |||||||||| |||||||||| ||||| GAGATTGAAT TTGAGATTGC AAGAATGAGA CCACG..... .......... .......... 479 CAGCTCAGGT GGCCAAAATT TACTGTTCTG GCTTCAAAGC CAGAAAATGC TATAAGTTGT 19422 .......... .......... .......... .......... .......... .......... 479 TTGAATCTTC GCGGCATTAG TTCAGATTCA GCTCTGATAG GTTATTAAAC AGTCGAGCAT 19362 .......... .......... .......... .......... .......... .......... 479 TTAAAGTTGC GACCTTTTGC TTTTGATCAT TCTGTGATCA TGCACATGTA TTTCGAGTCC 19302 .......... .......... .......... .......... .......... .......... 479 GTATTTTGTA AACTTGTGCA GAAAAGCAAA AAGCTATAAA AATATAGACT TCATATAAAG 19242 .......... .......... .......... .......... .......... .......... 479 ATCAAATTTT TGCCTCTTAA CAAGATATGA GTATTTCTTT ATTAATGGCC ATTTTCTTGA 19182 .......... .......... .......... .......... .......... .......... 479 CATTTATGTT GTTATCAAAA TTTGAGAAAG TATTGGTACC TCACCCAATT TGAAGTTTGC 19122 .......... .......... .......... .......... .......... .......... 479 AAACATTTTC TAGAGGAACT GGGACAAGAC TTTTATAACA TCAAATTGCA TGGGTTTCTT 19062 .......... .......... .......... .......... .......... .......... 479 GTCTGTCCCT ACTATAGTTT TTATCTTCTG TACCTGAAAA CTTCTAACAT ATCTTAGTTT 19002 .......... .......... .......... .......... .......... .......... 479 GCAGATTGAA CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG CTGCGTTTTT 18942 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATTGAA CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG CTGCGTTTTT 535 CTGTAAACAA AACTCAGGTT CTTACTGAAA ATTTGGTTGA TTTAGTGTGA GACAGATATG 18882 |||||||||| ||||||| CTGTAAACAA AACTCAG... .......... .......... .......... .......... 552 TTAATGAAAT GATACCGACC ATGATATTTT CACAGGCTGT GGAAGACAGA TTATTTGAAC 18822 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCTGT GGAAGACAGA TTATTTGAAC 577 TGGAAGCACT GCAAAAGGCC CTGCAAGAAG CAACAGGTCT GATAAATTGA TTTTTTAGAT 18762 |||||||||| |||||||||| |||||||||| |||||| TGGAAGCACT GCAAAAGGCC CTGCAAGAAG CAACAG.... .......... .......... 613 TGCTCTTTGA TTAGATATTT CCAGACTCTT ACATGGAAAT GAGTATGGGT ATATGAGAAG 18702 .......... .......... .......... .......... .......... .......... 613 ATCTAGAAGT CGAATTCTGC ATCATCTAAT TCTTAAGTTT TGGAGAAACA TAGGAGTACA 18642 .......... .......... .......... .......... .......... .......... 613 TATGTGGTTG TGGAGACACG ACTAACAAGT GCATAGAATA ATATGCATAT ATATTTTAGT 18582 .......... .......... .......... .......... .......... .......... 613 AATATCACAT ATATCGCACA TTAACAAAGT TTTCTTATCC TTATACAAAA ATAAGAGAAT 18522 .......... .......... .......... .......... .......... .......... 613 CTAGGTAACC TATGCTTCTC AACAGTAGAC TCAGCTGCAG TTGTAGTCAG CATACCATGT 18462 .......... .......... .......... .......... .......... .......... 613 GAATTGGCCA TTTCTGAGTG TGTATCCTGC ATCACATAAC ATGGGTTAGA AGGGGGCGGG 18402 .......... .......... .......... .......... .......... .......... 613 ATGGGTTTTA TTGAGATACG CAACATAGGC CACGTTCCAC GGTCTCACAT GCAGTTGAGG 18342 .......... .......... .......... .......... .......... .......... 613 TCTTGAGGAT GAAGTCTCAA TTATAAGTTA TCTTGTAGAG CAATTCTGAC ATCCTGCTGT 18282 .......... .......... .......... .......... .......... .......... 613 ATGATTTTTC TTTTTCCTGC AGAAGCCTAT GATAAATTAC AAGCAGATCT TGTAGCAACA 18222 |||||||| |||||||||| ||||||||| |||||||||| .......... .......... ..AAGCCTAT GATAAATTAC -AGCAGATCT TGTAGCAACA 650 AAGAAGAACC TAACTGAGAT TTTGACTTCA AAGGATGTCA AGGCTACT 18174 ||| |||||| |||||||||| |||||||||| || |||||| |||||||| AAG-AGAACC TAACTGAGAT TTTGACTTCA AA-GATGTC- AGGCTACT 695 hqPGS_C08HBa0060C12.1-_SGN-E344757+ (21161 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174) ******************************************************************************** EST sequence 316 +strand 602 n (File: SGN-E326578+) 1 TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 61 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 121 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG ATCCAGATGG 181 TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA GACGCCTTGA 241 GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA AAGAACGTCG 301 CAGAGTTCTT CGTGAGTCAC GAGTGATTCC GGATACAGTG GAAGGGCTTG TGGAGTTTTT 361 TCTTGACACT GAAGCTCAAG AGATTGAATT TGAGATTGCA AGAATGAGAC CACGATTGAA 421 CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG CTGCGTTTTT CTGTAAACAA 481 AACTCAGGCT GTGGAAGACA GATTATTTGA ACTGGAAGCA CTGCAAAAGG CCCTGCAAGA 541 AGCAACAGAA GCCTATGATA AATTACAAGC AGATCTTGTA GCAACAAAGA AGAACCTAAC 601 TG Predicted gene structure (within gDNA segment 21696 to 17596): Exon 1 21096 20928 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 170 316 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 317 414 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 415 487 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 488 548 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 6 18259 18206 ( 54 n); cDNA 549 602 ( 54 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E326578+ 1.000 602 1.000 C PGS_C08HBa0060C12.1-_SGN-E326578+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18206) Alignment (genomic DNA sequence = upper lines): TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 21037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 60 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 20977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 120 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG TAATTTCTCT 20917 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGG. .......... 169 TCACTTCTGA AGCTCCTTTC AATTATAATT TTACAAGTGC ATTATAAAAG TGGTGAATTT 20857 .......... .......... .......... .......... .......... .......... 169 TTTTATTTGT AATTACAGGA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 20797 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 211 GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 20737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 271 CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAGGTAAT TTTTTGAAGT 20677 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAG..... .......... 316 TATCATCTTA TCGAAGAATT TATAATGTTT GGAGCAACAT TTTATGGGGC AGAGTAAGGA 20617 .......... .......... .......... .......... .......... .......... 316 TTTCGAGTTT ATAAGTTCAT GATTCTAGAA GAAGCAACTT AGAGTATTGT GAATAAATTA 20557 .......... .......... .......... .......... .......... .......... 316 TTTATATATA TTAAGTAGAT TCTTACATGA GTTCCACTGA ACCTGTAGTG TAAGCAGACC 20497 .......... .......... .......... .......... .......... .......... 316 TGTAGCTACA CTCTTGTTTT TTATTTATAT TAGGCCATTA CAAGCTACTC AATGCGCCAG 20437 .......... .......... .......... .......... .......... .......... 316 TAATGATTCT CTGTCTTGTG CCAATGTTAG GATAGACACT GACCATCATT GACAAAAGCT 20377 .......... .......... .......... .......... .......... .......... 316 AAGTTTGATA GCAAAAGGCA CAACTTTATT TCTTAACGAA GTGCACCGAG CAAGCGCCAT 20317 .......... .......... .......... .......... .......... .......... 316 GTTCGATCAT GACTACGACC CGAACCGCCT AGCCCCTCGT GGGCCTTGCC ATAGGCAGGT 20257 .......... .......... .......... .......... .......... .......... 316 TGTTACCATT ATCCAACAAT CTCCCTCCCA ACACCTGCCT CATGCAGAAT GTAGCTTTTG 20197 .......... .......... .......... .......... .......... .......... 316 CAAATCAAAC TCATGACCTT GGCTCTGATA CTACTTGTTA GGATCAAGCG ATTATCATCA 20137 .......... .......... .......... .......... .......... .......... 316 TGCCAAAAGC TATAGATTTT GGCATAATGG TAAGCACACG GTCAACAACC AAGTACGTGG 20077 .......... .......... .......... .......... .......... .......... 316 AAATTTTTGT GTGGATAGAG AGTTGAATCT AAGATGTACC ACTTGATAAC ATGTTAAAAT 20017 .......... .......... .......... .......... .......... .......... 316 TGATATTTTC ACTTCATATT AATCTACTAG AAAAGGACAT TTTAGTTATG ACTCCCTTCA 19957 .......... .......... .......... .......... .......... .......... 316 TTTCAATTTA TTTATCCTAC TTCCTTTTTT AATCCGTTTG AAAAAGAATG TCTTTTTTTT 19897 .......... .......... .......... .......... .......... .......... 316 TCTTTTTGAC AACTTTAATT ATAGCTTTCC AGATAACATG GTTAAGACTG AAAGATTAAT 19837 .......... .......... .......... .......... .......... .......... 316 GAACAATTTA ATACATTTAC GCATCTTTAG TTAAGAGTAC AAGAATCAAA GTCTTTTGTA 19777 .......... .......... .......... .......... .......... .......... 316 TGCCGTGCCA AGTCAAAATC AAATAAACAA ATTGCAATGG AGAGGGTATA TATTAGGTCT 19717 .......... .......... .......... .......... .......... .......... 316 TCTACAATTT GTGGAGTAGT CAATAAGACA TCTTTGTACT CTTTAATTTT GTTATGGATG 19657 .......... .......... .......... .......... .......... .......... 316 CAAATGTAAT GCATATCTTT CTCTTATATG TTCTTTTCGG TCCTGATCAT AGTCACGAGT 19597 |||||||| .......... .......... .......... .......... .......... ..TCACGAGT 324 GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 19537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 384 TGAATTTGAG ATTGCAAGAA TGAGACCACG GTGAGTTATC TACTCTCCAA TGTCACAGCT 19477 |||||||||| |||||||||| |||||||||| TGAATTTGAG ATTGCAAGAA TGAGACCACG .......... .......... .......... 414 CAGGTGGCCA AAATTTACTG TTCTGGCTTC AAAGCCAGAA AATGCTATAA GTTGTTTGAA 19417 .......... .......... .......... .......... .......... .......... 414 TCTTCGCGGC ATTAGTTCAG ATTCAGCTCT GATAGGTTAT TAAACAGTCG AGCATTTAAA 19357 .......... .......... .......... .......... .......... .......... 414 GTTGCGACCT TTTGCTTTTG ATCATTCTGT GATCATGCAC ATGTATTTCG AGTCCGTATT 19297 .......... .......... .......... .......... .......... .......... 414 TTGTAAACTT GTGCAGAAAA GCAAAAAGCT ATAAAAATAT AGACTTCATA TAAAGATCAA 19237 .......... .......... .......... .......... .......... .......... 414 ATTTTTGCCT CTTAACAAGA TATGAGTATT TCTTTATTAA TGGCCATTTT CTTGACATTT 19177 .......... .......... .......... .......... .......... .......... 414 ATGTTGTTAT CAAAATTTGA GAAAGTATTG GTACCTCACC CAATTTGAAG TTTGCAAACA 19117 .......... .......... .......... .......... .......... .......... 414 TTTTCTAGAG GAACTGGGAC AAGACTTTTA TAACATCAAA TTGCATGGGT TTCTTGTCTG 19057 .......... .......... .......... .......... .......... .......... 414 TCCCTACTAT AGTTTTTATC TTCTGTACCT GAAAACTTCT AACATATCTT AGTTTGCAGA 18997 | .......... .......... .......... .......... .......... .........A 415 TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 18937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 475 AACAAAACTC AGGTTCTTAC TGAAAATTTG GTTGATTTAG TGTGAGACAG ATATGTTAAT 18877 |||||||||| || AACAAAACTC AG........ .......... .......... .......... .......... 487 GAAATGATAC CGACCATGAT ATTTTCACAG GCTGTGGAAG ACAGATTATT TGAACTGGAA 18817 |||||||||| |||||||||| |||||||||| .......... .......... .......... GCTGTGGAAG ACAGATTATT TGAACTGGAA 517 GCACTGCAAA AGGCCCTGCA AGAAGCAACA GGTCTGATAA ATTGATTTTT TAGATTGCTC 18757 |||||||||| |||||||||| |||||||||| | GCACTGCAAA AGGCCCTGCA AGAAGCAACA G......... .......... .......... 548 TTTGATTAGA TATTTCCAGA CTCTTACATG GAAATGAGTA TGGGTATATG AGAAGATCTA 18697 .......... .......... .......... .......... .......... .......... 548 GAAGTCGAAT TCTGCATCAT CTAATTCTTA AGTTTTGGAG AAACATAGGA GTACATATGT 18637 .......... .......... .......... .......... .......... .......... 548 GGTTGTGGAG ACACGACTAA CAAGTGCATA GAATAATATG CATATATATT TTAGTAATAT 18577 .......... .......... .......... .......... .......... .......... 548 CACATATATC GCACATTAAC AAAGTTTTCT TATCCTTATA CAAAAATAAG AGAATCTAGG 18517 .......... .......... .......... .......... .......... .......... 548 TAACCTATGC TTCTCAACAG TAGACTCAGC TGCAGTTGTA GTCAGCATAC CATGTGAATT 18457 .......... .......... .......... .......... .......... .......... 548 GGCCATTTCT GAGTGTGTAT CCTGCATCAC ATAACATGGG TTAGAAGGGG GCGGGATGGG 18397 .......... .......... .......... .......... .......... .......... 548 TTTTATTGAG ATACGCAACA TAGGCCACGT TCCACGGTCT CACATGCAGT TGAGGTCTTG 18337 .......... .......... .......... .......... .......... .......... 548 AGGATGAAGT CTCAATTATA AGTTATCTTG TAGAGCAATT CTGACATCCT GCTGTATGAT 18277 .......... .......... .......... .......... .......... .......... 548 TTTTCTTTTT CCTGCAGAAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAACAAAGAA 18217 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......AAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAACAAAGAA 591 GAACCTAACT G 18206 |||||||||| | GAACCTAACT G 602 hqPGS_C08HBa0060C12.1-_SGN-E326578+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18206) ******************************************************************************** EST sequence 396 +strand 584 n (File: SGN-E320668+) 1 AGGAGAGAAC CAGTCATTCA AAAGCTCTCA AAAACGGCCA ACAATGGCCG CAGCATTCAG 61 CAGCAGCTTT ACTAGTTCCG CCATTGGAGC TCAATTCTAC AGGCCCAAAT TTGTAAAACC 121 CAAGACTTTT GTAAACACAA TTCGCTGTGC TGGTAGACTA GAATGGGATC CAGATGGTTT 181 ATTGGGTCCG CCTCAAACGG GTCATATAGC CCGACTCGAG TTCCAGAGAC GCCTTGAGAA 241 CGATGCTGCG GCCAGAGAAG AATTTGAACG GCAAGTTCGT GAAGAGAAAG AACGTCGCAG 301 AGTTCTTCGT GAGTCACGAG TGATTCCGGA TACAGTGGAA GGGCTTGTGG AGTTTTTTCT 361 TGACACTGAA GCTCAAGAGA TTGAATTTGA GATTGCAAGA ATGAGACCAC GATTGAACAA 421 AGAATTCTTT GACCATCTGC AAGTCGAACT TGGAAAGCTG CGTTTTTCTG TAAACAAAAC 481 TCAGGCTGTG GAAGACAGAT TATTTGAACT GGAAGCACTG CAAAAGGCCC TGCAAGAAGC 541 AACAGAAGCC TATGATAAAT TACAAGGCAG ATCTTGTAGC AACA Predicted gene structure (within gDNA segment 21756 to 17786): Exon 1 21086 20928 ( 159 n); cDNA 8 166 ( 159 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 167 313 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 314 411 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 412 484 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 485 545 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 0) Exon 6 18259 18222 ( 38 n); cDNA 546 584 ( 39 n); score: 0.934 MATCH C08HBa0060C12.1- SGN-E320668+ 1.000 576 0.986 C PGS_C08HBa0060C12.1-_SGN-E320668+ (21086 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18222) Alignment (genomic DNA sequence = upper lines): AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT CAGCAGCAGC 21027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT CAGCAGCAGC 67 TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA ACCCAAGACT 20967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA ACCCAAGACT 127 TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG TAATTTCTCT TCACTTCTGA 20907 |||||||||| |||||||||| |||||||||| ||||||||| TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGG. .......... .......... 166 AGCTCCTTTC AATTATAATT TTACAAGTGC ATTATAAAAG TGGTGAATTT TTTTATTTGT 20847 .......... .......... .......... .......... .......... .......... 166 AATTACAGGA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA GCCCGACTCG 20787 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA GCCCGACTCG 218 AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA CGGCAAGTTC 20727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA CGGCAAGTTC 278 GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAGGTAAT TTTTTGAAGT TATCATCTTA 20667 |||||||||| |||||||||| |||||||||| ||||| GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAG..... .......... .......... 313 TCGAAGAATT TATAATGTTT GGAGCAACAT TTTATGGGGC AGAGTAAGGA TTTCGAGTTT 20607 .......... .......... .......... .......... .......... .......... 313 ATAAGTTCAT GATTCTAGAA GAAGCAACTT AGAGTATTGT GAATAAATTA TTTATATATA 20547 .......... .......... .......... .......... .......... .......... 313 TTAAGTAGAT TCTTACATGA GTTCCACTGA ACCTGTAGTG TAAGCAGACC TGTAGCTACA 20487 .......... .......... .......... .......... .......... .......... 313 CTCTTGTTTT TTATTTATAT TAGGCCATTA CAAGCTACTC AATGCGCCAG TAATGATTCT 20427 .......... .......... .......... .......... .......... .......... 313 CTGTCTTGTG CCAATGTTAG GATAGACACT GACCATCATT GACAAAAGCT AAGTTTGATA 20367 .......... .......... .......... .......... .......... .......... 313 GCAAAAGGCA CAACTTTATT TCTTAACGAA GTGCACCGAG CAAGCGCCAT GTTCGATCAT 20307 .......... .......... .......... .......... .......... .......... 313 GACTACGACC CGAACCGCCT AGCCCCTCGT GGGCCTTGCC ATAGGCAGGT TGTTACCATT 20247 .......... .......... .......... .......... .......... .......... 313 ATCCAACAAT CTCCCTCCCA ACACCTGCCT CATGCAGAAT GTAGCTTTTG CAAATCAAAC 20187 .......... .......... .......... .......... .......... .......... 313 TCATGACCTT GGCTCTGATA CTACTTGTTA GGATCAAGCG ATTATCATCA TGCCAAAAGC 20127 .......... .......... .......... .......... .......... .......... 313 TATAGATTTT GGCATAATGG TAAGCACACG GTCAACAACC AAGTACGTGG AAATTTTTGT 20067 .......... .......... .......... .......... .......... .......... 313 GTGGATAGAG AGTTGAATCT AAGATGTACC ACTTGATAAC ATGTTAAAAT TGATATTTTC 20007 .......... .......... .......... .......... .......... .......... 313 ACTTCATATT AATCTACTAG AAAAGGACAT TTTAGTTATG ACTCCCTTCA TTTCAATTTA 19947 .......... .......... .......... .......... .......... .......... 313 TTTATCCTAC TTCCTTTTTT AATCCGTTTG AAAAAGAATG TCTTTTTTTT TCTTTTTGAC 19887 .......... .......... .......... .......... .......... .......... 313 AACTTTAATT ATAGCTTTCC AGATAACATG GTTAAGACTG AAAGATTAAT GAACAATTTA 19827 .......... .......... .......... .......... .......... .......... 313 ATACATTTAC GCATCTTTAG TTAAGAGTAC AAGAATCAAA GTCTTTTGTA TGCCGTGCCA 19767 .......... .......... .......... .......... .......... .......... 313 AGTCAAAATC AAATAAACAA ATTGCAATGG AGAGGGTATA TATTAGGTCT TCTACAATTT 19707 .......... .......... .......... .......... .......... .......... 313 GTGGAGTAGT CAATAAGACA TCTTTGTACT CTTTAATTTT GTTATGGATG CAAATGTAAT 19647 .......... .......... .......... .......... .......... .......... 313 GCATATCTTT CTCTTATATG TTCTTTTCGG TCCTGATCAT AGTCACGAGT GATTCCGGAT 19587 |||||||| |||||||||| .......... .......... .......... .......... ..TCACGAGT GATTCCGGAT 331 ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT TGAATTTGAG 19527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT TGAATTTGAG 391 ATTGCAAGAA TGAGACCACG GTGAGTTATC TACTCTCCAA TGTCACAGCT CAGGTGGCCA 19467 |||||||||| |||||||||| ATTGCAAGAA TGAGACCACG .......... .......... .......... .......... 411 AAATTTACTG TTCTGGCTTC AAAGCCAGAA AATGCTATAA GTTGTTTGAA TCTTCGCGGC 19407 .......... .......... .......... .......... .......... .......... 411 ATTAGTTCAG ATTCAGCTCT GATAGGTTAT TAAACAGTCG AGCATTTAAA GTTGCGACCT 19347 .......... .......... .......... .......... .......... .......... 411 TTTGCTTTTG ATCATTCTGT GATCATGCAC ATGTATTTCG AGTCCGTATT TTGTAAACTT 19287 .......... .......... .......... .......... .......... .......... 411 GTGCAGAAAA GCAAAAAGCT ATAAAAATAT AGACTTCATA TAAAGATCAA ATTTTTGCCT 19227 .......... .......... .......... .......... .......... .......... 411 CTTAACAAGA TATGAGTATT TCTTTATTAA TGGCCATTTT CTTGACATTT ATGTTGTTAT 19167 .......... .......... .......... .......... .......... .......... 411 CAAAATTTGA GAAAGTATTG GTACCTCACC CAATTTGAAG TTTGCAAACA TTTTCTAGAG 19107 .......... .......... .......... .......... .......... .......... 411 GAACTGGGAC AAGACTTTTA TAACATCAAA TTGCATGGGT TTCTTGTCTG TCCCTACTAT 19047 .......... .......... .......... .......... .......... .......... 411 AGTTTTTATC TTCTGTACCT GAAAACTTCT AACATATCTT AGTTTGCAGA TTGAACAAAG 18987 | |||||||||| .......... .......... .......... .......... .........A TTGAACAAAG 422 AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA AACAAAACTC 18927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA AACAAAACTC 482 AGGTTCTTAC TGAAAATTTG GTTGATTTAG TGTGAGACAG ATATGTTAAT GAAATGATAC 18867 || AG........ .......... .......... .......... .......... .......... 484 CGACCATGAT ATTTTCACAG GCTGTGGAAG ACAGATTATT TGAACTGGAA GCACTGCAAA 18807 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GCTGTGGAAG ACAGATTATT TGAACTGGAA GCACTGCAAA 524 AGGCCCTGCA AGAAGCAACA GGTCTGATAA ATTGATTTTT TAGATTGCTC TTTGATTAGA 18747 |||||||||| |||||||||| | AGGCCCTGCA AGAAGCAACA G......... .......... .......... .......... 545 TATTTCCAGA CTCTTACATG GAAATGAGTA TGGGTATATG AGAAGATCTA GAAGTCGAAT 18687 .......... .......... .......... .......... .......... .......... 545 TCTGCATCAT CTAATTCTTA AGTTTTGGAG AAACATAGGA GTACATATGT GGTTGTGGAG 18627 .......... .......... .......... .......... .......... .......... 545 ACACGACTAA CAAGTGCATA GAATAATATG CATATATATT TTAGTAATAT CACATATATC 18567 .......... .......... .......... .......... .......... .......... 545 GCACATTAAC AAAGTTTTCT TATCCTTATA CAAAAATAAG AGAATCTAGG TAACCTATGC 18507 .......... .......... .......... .......... .......... .......... 545 TTCTCAACAG TAGACTCAGC TGCAGTTGTA GTCAGCATAC CATGTGAATT GGCCATTTCT 18447 .......... .......... .......... .......... .......... .......... 545 GAGTGTGTAT CCTGCATCAC ATAACATGGG TTAGAAGGGG GCGGGATGGG TTTTATTGAG 18387 .......... .......... .......... .......... .......... .......... 545 ATACGCAACA TAGGCCACGT TCCACGGTCT CACATGCAGT TGAGGTCTTG AGGATGAAGT 18327 .......... .......... .......... .......... .......... .......... 545 CTCAATTATA AGTTATCTTG TAGAGCAATT CTGACATCCT GCTGTATGAT TTTTCTTTTT 18267 .......... .......... .......... .......... .......... .......... 545 CCTGCAGAAG CCTATGATAA ATTACAA-GC AGATCTTGTA GCAACA 18222 ||| |||||||||| ||||||| || |||||||||| |||||| .......AAG CCTATGATAA ATTACAAGGC AGATCTTGTA GCAACA 584 hqPGS_C08HBa0060C12.1-_SGN-E320668+ (21086 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18222) ******************************************************************************** EST sequence 357 +strand 585 n (File: SGN-E312216+) 1 TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 61 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 121 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG ATCCAGATGG 181 TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA GACGCCTTGA 241 GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA AAGAACGTCG 301 CAGAGTTCTT CGTGAGTCAC GAGTGATTCC GGATACAGTG GAAGGGCTTG TGGAGTTTTT 361 TCTTGACACT GAAGCTCAAG AGATTGAATT TGAGATTGCA AGAATGAGAC CACGATTGAA 421 CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG CTGCGTTTTT CTGTAAACAA 481 AACTCAGGCT GTGGAAGACA GATTATTTGA ACTGGAAGCA CTGCAAAAGG CCCTGCAAGA 541 AGCAACAGAA GCCTATGATA AATTACAAGC AGATCTTGTA GCAAC Predicted gene structure (within gDNA segment 21696 to 17613): Exon 1 21096 20928 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 170 316 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 317 414 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 415 487 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 488 548 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 0) Exon 6 18259 18223 ( 37 n); cDNA 549 585 ( 37 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E312216+ 1.000 585 1.000 C PGS_C08HBa0060C12.1-_SGN-E312216+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18223) Alignment (genomic DNA sequence = upper lines): TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 21037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTCAAT AACCAGTCAT TCAAAAGCTC TCAAAAACGG CCAACAATGG CCGCAGCATT 60 CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 20977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCAGC TTTACTAGTT CCGCCATTGG AGCTCAATTC TACAGGCCCA AATTTGTAAA 120 ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGGG TAATTTCTCT 20917 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACCCAAGACT TTTGTAAACA CAATTCGCTG TGCTGGTAGA CTAGAATGG. .......... 169 TCACTTCTGA AGCTCCTTTC AATTATAATT TTACAAGTGC ATTATAAAAG TGGTGAATTT 20857 .......... .......... .......... .......... .......... .......... 169 TTTTATTTGT AATTACAGGA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 20797 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 211 GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 20737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 271 CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAGGTAAT TTTTTGAAGT 20677 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAG..... .......... 316 TATCATCTTA TCGAAGAATT TATAATGTTT GGAGCAACAT TTTATGGGGC AGAGTAAGGA 20617 .......... .......... .......... .......... .......... .......... 316 TTTCGAGTTT ATAAGTTCAT GATTCTAGAA GAAGCAACTT AGAGTATTGT GAATAAATTA 20557 .......... .......... .......... .......... .......... .......... 316 TTTATATATA TTAAGTAGAT TCTTACATGA GTTCCACTGA ACCTGTAGTG TAAGCAGACC 20497 .......... .......... .......... .......... .......... .......... 316 TGTAGCTACA CTCTTGTTTT TTATTTATAT TAGGCCATTA CAAGCTACTC AATGCGCCAG 20437 .......... .......... .......... .......... .......... .......... 316 TAATGATTCT CTGTCTTGTG CCAATGTTAG GATAGACACT GACCATCATT GACAAAAGCT 20377 .......... .......... .......... .......... .......... .......... 316 AAGTTTGATA GCAAAAGGCA CAACTTTATT TCTTAACGAA GTGCACCGAG CAAGCGCCAT 20317 .......... .......... .......... .......... .......... .......... 316 GTTCGATCAT GACTACGACC CGAACCGCCT AGCCCCTCGT GGGCCTTGCC ATAGGCAGGT 20257 .......... .......... .......... .......... .......... .......... 316 TGTTACCATT ATCCAACAAT CTCCCTCCCA ACACCTGCCT CATGCAGAAT GTAGCTTTTG 20197 .......... .......... .......... .......... .......... .......... 316 CAAATCAAAC TCATGACCTT GGCTCTGATA CTACTTGTTA GGATCAAGCG ATTATCATCA 20137 .......... .......... .......... .......... .......... .......... 316 TGCCAAAAGC TATAGATTTT GGCATAATGG TAAGCACACG GTCAACAACC AAGTACGTGG 20077 .......... .......... .......... .......... .......... .......... 316 AAATTTTTGT GTGGATAGAG AGTTGAATCT AAGATGTACC ACTTGATAAC ATGTTAAAAT 20017 .......... .......... .......... .......... .......... .......... 316 TGATATTTTC ACTTCATATT AATCTACTAG AAAAGGACAT TTTAGTTATG ACTCCCTTCA 19957 .......... .......... .......... .......... .......... .......... 316 TTTCAATTTA TTTATCCTAC TTCCTTTTTT AATCCGTTTG AAAAAGAATG TCTTTTTTTT 19897 .......... .......... .......... .......... .......... .......... 316 TCTTTTTGAC AACTTTAATT ATAGCTTTCC AGATAACATG GTTAAGACTG AAAGATTAAT 19837 .......... .......... .......... .......... .......... .......... 316 GAACAATTTA ATACATTTAC GCATCTTTAG TTAAGAGTAC AAGAATCAAA GTCTTTTGTA 19777 .......... .......... .......... .......... .......... .......... 316 TGCCGTGCCA AGTCAAAATC AAATAAACAA ATTGCAATGG AGAGGGTATA TATTAGGTCT 19717 .......... .......... .......... .......... .......... .......... 316 TCTACAATTT GTGGAGTAGT CAATAAGACA TCTTTGTACT CTTTAATTTT GTTATGGATG 19657 .......... .......... .......... .......... .......... .......... 316 CAAATGTAAT GCATATCTTT CTCTTATATG TTCTTTTCGG TCCTGATCAT AGTCACGAGT 19597 |||||||| .......... .......... .......... .......... .......... ..TCACGAGT 324 GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 19537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCGGAT ACAGTGGAAG GGCTTGTGGA GTTTTTTCTT GACACTGAAG CTCAAGAGAT 384 TGAATTTGAG ATTGCAAGAA TGAGACCACG GTGAGTTATC TACTCTCCAA TGTCACAGCT 19477 |||||||||| |||||||||| |||||||||| TGAATTTGAG ATTGCAAGAA TGAGACCACG .......... .......... .......... 414 CAGGTGGCCA AAATTTACTG TTCTGGCTTC AAAGCCAGAA AATGCTATAA GTTGTTTGAA 19417 .......... .......... .......... .......... .......... .......... 414 TCTTCGCGGC ATTAGTTCAG ATTCAGCTCT GATAGGTTAT TAAACAGTCG AGCATTTAAA 19357 .......... .......... .......... .......... .......... .......... 414 GTTGCGACCT TTTGCTTTTG ATCATTCTGT GATCATGCAC ATGTATTTCG AGTCCGTATT 19297 .......... .......... .......... .......... .......... .......... 414 TTGTAAACTT GTGCAGAAAA GCAAAAAGCT ATAAAAATAT AGACTTCATA TAAAGATCAA 19237 .......... .......... .......... .......... .......... .......... 414 ATTTTTGCCT CTTAACAAGA TATGAGTATT TCTTTATTAA TGGCCATTTT CTTGACATTT 19177 .......... .......... .......... .......... .......... .......... 414 ATGTTGTTAT CAAAATTTGA GAAAGTATTG GTACCTCACC CAATTTGAAG TTTGCAAACA 19117 .......... .......... .......... .......... .......... .......... 414 TTTTCTAGAG GAACTGGGAC AAGACTTTTA TAACATCAAA TTGCATGGGT TTCTTGTCTG 19057 .......... .......... .......... .......... .......... .......... 414 TCCCTACTAT AGTTTTTATC TTCTGTACCT GAAAACTTCT AACATATCTT AGTTTGCAGA 18997 | .......... .......... .......... .......... .......... .........A 415 TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 18937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG TTTTTCTGTA 475 AACAAAACTC AGGTTCTTAC TGAAAATTTG GTTGATTTAG TGTGAGACAG ATATGTTAAT 18877 |||||||||| || AACAAAACTC AG........ .......... .......... .......... .......... 487 GAAATGATAC CGACCATGAT ATTTTCACAG GCTGTGGAAG ACAGATTATT TGAACTGGAA 18817 |||||||||| |||||||||| |||||||||| .......... .......... .......... GCTGTGGAAG ACAGATTATT TGAACTGGAA 517 GCACTGCAAA AGGCCCTGCA AGAAGCAACA GGTCTGATAA ATTGATTTTT TAGATTGCTC 18757 |||||||||| |||||||||| |||||||||| | GCACTGCAAA AGGCCCTGCA AGAAGCAACA G......... .......... .......... 548 TTTGATTAGA TATTTCCAGA CTCTTACATG GAAATGAGTA TGGGTATATG AGAAGATCTA 18697 .......... .......... .......... .......... .......... .......... 548 GAAGTCGAAT TCTGCATCAT CTAATTCTTA AGTTTTGGAG AAACATAGGA GTACATATGT 18637 .......... .......... .......... .......... .......... .......... 548 GGTTGTGGAG ACACGACTAA CAAGTGCATA GAATAATATG CATATATATT TTAGTAATAT 18577 .......... .......... .......... .......... .......... .......... 548 CACATATATC GCACATTAAC AAAGTTTTCT TATCCTTATA CAAAAATAAG AGAATCTAGG 18517 .......... .......... .......... .......... .......... .......... 548 TAACCTATGC TTCTCAACAG TAGACTCAGC TGCAGTTGTA GTCAGCATAC CATGTGAATT 18457 .......... .......... .......... .......... .......... .......... 548 GGCCATTTCT GAGTGTGTAT CCTGCATCAC ATAACATGGG TTAGAAGGGG GCGGGATGGG 18397 .......... .......... .......... .......... .......... .......... 548 TTTTATTGAG ATACGCAACA TAGGCCACGT TCCACGGTCT CACATGCAGT TGAGGTCTTG 18337 .......... .......... .......... .......... .......... .......... 548 AGGATGAAGT CTCAATTATA AGTTATCTTG TAGAGCAATT CTGACATCCT GCTGTATGAT 18277 .......... .......... .......... .......... .......... .......... 548 TTTTCTTTTT CCTGCAGAAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAAC 18223 ||| |||||||||| |||||||||| |||||||||| |||| .......... .......AAG CCTATGATAA ATTACAAGCA GATCTTGTAG CAAC 585 hqPGS_C08HBa0060C12.1-_SGN-E312216+ (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18223) ******************************************************************************** EST sequence 372 +strand 536 n (File: SGN-E289295+) 1 CAAAAACGGC CAACAATGGC CGCAGCATTC AGCAGCAGCT TTACTAGTTC CGCCATTGGA 61 GCTCAATTCT ACAGGCCCAA ATTTGTAAAA CCCAAGACTT TTGTAAACAC AATTCGCTGT 121 GCTGGTAGAC TAGAATGGGA TCCAGATGGT TTATTGGGTC CGCCTCAAAC GGGTCATATA 181 GCCCGACTCG AGTTCCAGAG ACGCCTTGAG AACGATGCTG CGGCCAGAGA AGAATTTGAA 241 CGGCAAGTTC GTGAAGAGAA AGAACGTCGC AGAGTTCTTC GTGAGTCACG AGTGATTCCG 301 GATACAGTGG AAGGGCTTGT GGAGTTTTTT CTTGACACTG AAGCTCAAGA GATTGAATTT 361 GAGATTGCAA GAATGAGACC ACGATTGAAC AAAGAATTCT TTGACCATCT GCAAGTCGAA 421 CTTGGAAAGC TGCGTTTTTC TGTAAACAAA ACTCAGGCTG TGGAAGACAG ATTATTTGAA 481 CTGGAAGCAC TGCAAAAGGC CCTGCAAGAA GCAACAGAAG CCTATGATAA ATTACA Predicted gene structure (within gDNA segment 21665 to 17986): Exon 1 21065 20928 ( 138 n); cDNA 1 138 ( 138 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 139 285 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 286 383 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 384 456 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 18846 18786 ( 61 n); cDNA 457 517 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 (s: 1.00), Pa: 0.995 (s: 0) Exon 6 18259 18241 ( 19 n); cDNA 518 536 ( 19 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E289295+ 1.000 536 1.000 C PGS_C08HBa0060C12.1-_SGN-E289295+ (21065 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18241) Alignment (genomic DNA sequence = upper lines): CAAAAACGGC CAACAATGGC CGCAGCATTC AGCAGCAGCT TTACTAGTTC CGCCATTGGA 21006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAACGGC CAACAATGGC CGCAGCATTC AGCAGCAGCT TTACTAGTTC CGCCATTGGA 60 GCTCAATTCT ACAGGCCCAA ATTTGTAAAA CCCAAGACTT TTGTAAACAC AATTCGCTGT 20946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAATTCT ACAGGCCCAA ATTTGTAAAA CCCAAGACTT TTGTAAACAC AATTCGCTGT 120 GCTGGTAGAC TAGAATGGGT AATTTCTCTT CACTTCTGAA GCTCCTTTCA ATTATAATTT 20886 |||||||||| |||||||| GCTGGTAGAC TAGAATGG.. .......... .......... .......... .......... 138 TACAAGTGCA TTATAAAAGT GGTGAATTTT TTTATTTGTA ATTACAGGAT CCAGATGGTT 20826 ||| |||||||||| .......... .......... .......... .......... .......GAT CCAGATGGTT 151 TATTGGGTCC GCCTCAAACG GGTCATATAG CCCGACTCGA GTTCCAGAGA CGCCTTGAGA 20766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGGTCC GCCTCAAACG GGTCATATAG CCCGACTCGA GTTCCAGAGA CGCCTTGAGA 211 ACGATGCTGC GGCCAGAGAA GAATTTGAAC GGCAAGTTCG TGAAGAGAAA GAACGTCGCA 20706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATGCTGC GGCCAGAGAA GAATTTGAAC GGCAAGTTCG TGAAGAGAAA GAACGTCGCA 271 GAGTTCTTCG TGAGGTAATT TTTTGAAGTT ATCATCTTAT CGAAGAATTT ATAATGTTTG 20646 |||||||||| |||| GAGTTCTTCG TGAG...... .......... .......... .......... .......... 285 GAGCAACATT TTATGGGGCA GAGTAAGGAT TTCGAGTTTA TAAGTTCATG ATTCTAGAAG 20586 .......... .......... .......... .......... .......... .......... 285 AAGCAACTTA GAGTATTGTG AATAAATTAT TTATATATAT TAAGTAGATT CTTACATGAG 20526 .......... .......... .......... .......... .......... .......... 285 TTCCACTGAA CCTGTAGTGT AAGCAGACCT GTAGCTACAC TCTTGTTTTT TATTTATATT 20466 .......... .......... .......... .......... .......... .......... 285 AGGCCATTAC AAGCTACTCA ATGCGCCAGT AATGATTCTC TGTCTTGTGC CAATGTTAGG 20406 .......... .......... .......... .......... .......... .......... 285 ATAGACACTG ACCATCATTG ACAAAAGCTA AGTTTGATAG CAAAAGGCAC AACTTTATTT 20346 .......... .......... .......... .......... .......... .......... 285 CTTAACGAAG TGCACCGAGC AAGCGCCATG TTCGATCATG ACTACGACCC GAACCGCCTA 20286 .......... .......... .......... .......... .......... .......... 285 GCCCCTCGTG GGCCTTGCCA TAGGCAGGTT GTTACCATTA TCCAACAATC TCCCTCCCAA 20226 .......... .......... .......... .......... .......... .......... 285 CACCTGCCTC ATGCAGAATG TAGCTTTTGC AAATCAAACT CATGACCTTG GCTCTGATAC 20166 .......... .......... .......... .......... .......... .......... 285 TACTTGTTAG GATCAAGCGA TTATCATCAT GCCAAAAGCT ATAGATTTTG GCATAATGGT 20106 .......... .......... .......... .......... .......... .......... 285 AAGCACACGG TCAACAACCA AGTACGTGGA AATTTTTGTG TGGATAGAGA GTTGAATCTA 20046 .......... .......... .......... .......... .......... .......... 285 AGATGTACCA CTTGATAACA TGTTAAAATT GATATTTTCA CTTCATATTA ATCTACTAGA 19986 .......... .......... .......... .......... .......... .......... 285 AAAGGACATT TTAGTTATGA CTCCCTTCAT TTCAATTTAT TTATCCTACT TCCTTTTTTA 19926 .......... .......... .......... .......... .......... .......... 285 ATCCGTTTGA AAAAGAATGT CTTTTTTTTT CTTTTTGACA ACTTTAATTA TAGCTTTCCA 19866 .......... .......... .......... .......... .......... .......... 285 GATAACATGG TTAAGACTGA AAGATTAATG AACAATTTAA TACATTTACG CATCTTTAGT 19806 .......... .......... .......... .......... .......... .......... 285 TAAGAGTACA AGAATCAAAG TCTTTTGTAT GCCGTGCCAA GTCAAAATCA AATAAACAAA 19746 .......... .......... .......... .......... .......... .......... 285 TTGCAATGGA GAGGGTATAT ATTAGGTCTT CTACAATTTG TGGAGTAGTC AATAAGACAT 19686 .......... .......... .......... .......... .......... .......... 285 CTTTGTACTC TTTAATTTTG TTATGGATGC AAATGTAATG CATATCTTTC TCTTATATGT 19626 .......... .......... .......... .......... .......... .......... 285 TCTTTTCGGT CCTGATCATA GTCACGAGTG ATTCCGGATA CAGTGGAAGG GCTTGTGGAG 19566 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TCACGAGTG ATTCCGGATA CAGTGGAAGG GCTTGTGGAG 324 TTTTTTCTTG ACACTGAAGC TCAAGAGATT GAATTTGAGA TTGCAAGAAT GAGACCACGG 19506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTTTTCTTG ACACTGAAGC TCAAGAGATT GAATTTGAGA TTGCAAGAAT GAGACCACG. 383 TGAGTTATCT ACTCTCCAAT GTCACAGCTC AGGTGGCCAA AATTTACTGT TCTGGCTTCA 19446 .......... .......... .......... .......... .......... .......... 383 AAGCCAGAAA ATGCTATAAG TTGTTTGAAT CTTCGCGGCA TTAGTTCAGA TTCAGCTCTG 19386 .......... .......... .......... .......... .......... .......... 383 ATAGGTTATT AAACAGTCGA GCATTTAAAG TTGCGACCTT TTGCTTTTGA TCATTCTGTG 19326 .......... .......... .......... .......... .......... .......... 383 ATCATGCACA TGTATTTCGA GTCCGTATTT TGTAAACTTG TGCAGAAAAG CAAAAAGCTA 19266 .......... .......... .......... .......... .......... .......... 383 TAAAAATATA GACTTCATAT AAAGATCAAA TTTTTGCCTC TTAACAAGAT ATGAGTATTT 19206 .......... .......... .......... .......... .......... .......... 383 CTTTATTAAT GGCCATTTTC TTGACATTTA TGTTGTTATC AAAATTTGAG AAAGTATTGG 19146 .......... .......... .......... .......... .......... .......... 383 TACCTCACCC AATTTGAAGT TTGCAAACAT TTTCTAGAGG AACTGGGACA AGACTTTTAT 19086 .......... .......... .......... .......... .......... .......... 383 AACATCAAAT TGCATGGGTT TCTTGTCTGT CCCTACTATA GTTTTTATCT TCTGTACCTG 19026 .......... .......... .......... .......... .......... .......... 383 AAAACTTCTA ACATATCTTA GTTTGCAGAT TGAACAAAGA ATTCTTTGAC CATCTGCAAG 18966 || |||||||||| |||||||||| |||||||||| .......... .......... ........AT TGAACAAAGA ATTCTTTGAC CATCTGCAAG 415 TCGAACTTGG AAAGCTGCGT TTTTCTGTAA ACAAAACTCA GGTTCTTACT GAAAATTTGG 18906 |||||||||| |||||||||| |||||||||| |||||||||| | TCGAACTTGG AAAGCTGCGT TTTTCTGTAA ACAAAACTCA G......... .......... 456 TTGATTTAGT GTGAGACAGA TATGTTAATG AAATGATACC GACCATGATA TTTTCACAGG 18846 | .......... .......... .......... .......... .......... .........G 457 CTGTGGAAGA CAGATTATTT GAACTGGAAG CACTGCAAAA GGCCCTGCAA GAAGCAACAG 18786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGGAAGA CAGATTATTT GAACTGGAAG CACTGCAAAA GGCCCTGCAA GAAGCAACAG 517 GTCTGATAAA TTGATTTTTT AGATTGCTCT TTGATTAGAT ATTTCCAGAC TCTTACATGG 18726 .......... .......... .......... .......... .......... .......... 517 AAATGAGTAT GGGTATATGA GAAGATCTAG AAGTCGAATT CTGCATCATC TAATTCTTAA 18666 .......... .......... .......... .......... .......... .......... 517 GTTTTGGAGA AACATAGGAG TACATATGTG GTTGTGGAGA CACGACTAAC AAGTGCATAG 18606 .......... .......... .......... .......... .......... .......... 517 AATAATATGC ATATATATTT TAGTAATATC ACATATATCG CACATTAACA AAGTTTTCTT 18546 .......... .......... .......... .......... .......... .......... 517 ATCCTTATAC AAAAATAAGA GAATCTAGGT AACCTATGCT TCTCAACAGT AGACTCAGCT 18486 .......... .......... .......... .......... .......... .......... 517 GCAGTTGTAG TCAGCATACC ATGTGAATTG GCCATTTCTG AGTGTGTATC CTGCATCACA 18426 .......... .......... .......... .......... .......... .......... 517 TAACATGGGT TAGAAGGGGG CGGGATGGGT TTTATTGAGA TACGCAACAT AGGCCACGTT 18366 .......... .......... .......... .......... .......... .......... 517 CCACGGTCTC ACATGCAGTT GAGGTCTTGA GGATGAAGTC TCAATTATAA GTTATCTTGT 18306 .......... .......... .......... .......... .......... .......... 517 AGAGCAATTC TGACATCCTG CTGTATGATT TTTCTTTTTC CTGCAGAAGC CTATGATAAA 18246 |||| |||||||||| .......... .......... .......... .......... ......AAGC CTATGATAAA 531 TTACA 18241 ||||| TTACA 536 hqPGS_C08HBa0060C12.1-_SGN-E289295+ (21065 20928,20838 20692,19604 19507,18997 18925,18846 18786) ******************************************************************************** EST sequence 366 +strand 554 n (File: SGN-E298967+) 1 GCATTTCTAA CGGATAAAGC ACCGCGAAAC TAACTGAACT CAATAACCAG TCATTCAAAA 61 GCTCTCAAAA ACGGCCAACA ATGGCCGCAG CATTCAGCAG CAGCTTTACT AGTTCCGCCA 121 TTGGAGCTCA ATTCTACAGG CCCAAATTTG TAAAACCCAA GACTTTTGTA AACACAATTC 181 GCTGTGCTGG TAGACTAGAA TGGGATCCAG ATGGTTTATT GGGTCCGCCT CAAACGGGTC 241 ATATAGCCCG ACTCGAGTTC CAGAGACGCC TTGAGAACGA TGCTGCGGCC AGAGAAGAAT 301 TTGAACGGCA AGTTCGTGAA GAGAAAGAAC GTCGCAGAGT TCTTCGTGAG TCACGAGTGA 361 TTCCGGATAC AGTGGAAGGG CTTGTGGAGT TTTTTCTTGA CACTGAAGCT CAAGAGATTG 421 AATTTGAGAT TGCAAGAATG AGACCACGAT TGAACAAAGA ATTCTTTGAC CATCTGCAAG 481 TCGAACTTGG AAAGCTGCGT TTTTCTGTAA ACAAAACTCA GGCTGTGGAA GACAGATTAT 541 TTGAACTGGA AGCA Predicted gene structure (within gDNA segment 21730 to 18204): Exon 1 21130 20928 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 204 350 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 351 448 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18925 ( 73 n); cDNA 449 521 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 (s: 1.00), Pa: 0.998 (s: 0) Exon 5 18846 18814 ( 33 n); cDNA 522 554 ( 33 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E298967+ 1.000 554 1.000 C PGS_C08HBa0060C12.1-_SGN-E298967+ (21130 20928,20838 20692,19604 19507,18997 18925,18846 18814) Alignment (genomic DNA sequence = upper lines): GCATTTCTAA CGGATAAAGC ACCGCGAAAC TAACTGAACT CAATAACCAG TCATTCAAAA 21071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTTCTAA CGGATAAAGC ACCGCGAAAC TAACTGAACT CAATAACCAG TCATTCAAAA 60 GCTCTCAAAA ACGGCCAACA ATGGCCGCAG CATTCAGCAG CAGCTTTACT AGTTCCGCCA 21011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTCAAAA ACGGCCAACA ATGGCCGCAG CATTCAGCAG CAGCTTTACT AGTTCCGCCA 120 TTGGAGCTCA ATTCTACAGG CCCAAATTTG TAAAACCCAA GACTTTTGTA AACACAATTC 20951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGCTCA ATTCTACAGG CCCAAATTTG TAAAACCCAA GACTTTTGTA AACACAATTC 180 GCTGTGCTGG TAGACTAGAA TGGGTAATTT CTCTTCACTT CTGAAGCTCC TTTCAATTAT 20891 |||||||||| |||||||||| ||| GCTGTGCTGG TAGACTAGAA TGG....... .......... .......... .......... 203 AATTTTACAA GTGCATTATA AAAGTGGTGA ATTTTTTTAT TTGTAATTAC AGGATCCAGA 20831 |||||||| .......... .......... .......... .......... .......... ..GATCCAGA 211 TGGTTTATTG GGTCCGCCTC AAACGGGTCA TATAGCCCGA CTCGAGTTCC AGAGACGCCT 20771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTTATTG GGTCCGCCTC AAACGGGTCA TATAGCCCGA CTCGAGTTCC AGAGACGCCT 271 TGAGAACGAT GCTGCGGCCA GAGAAGAATT TGAACGGCAA GTTCGTGAAG AGAAAGAACG 20711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAACGAT GCTGCGGCCA GAGAAGAATT TGAACGGCAA GTTCGTGAAG AGAAAGAACG 331 TCGCAGAGTT CTTCGTGAGG TAATTTTTTG AAGTTATCAT CTTATCGAAG AATTTATAAT 20651 |||||||||| ||||||||| TCGCAGAGTT CTTCGTGAG. .......... .......... .......... .......... 350 GTTTGGAGCA ACATTTTATG GGGCAGAGTA AGGATTTCGA GTTTATAAGT TCATGATTCT 20591 .......... .......... .......... .......... .......... .......... 350 AGAAGAAGCA ACTTAGAGTA TTGTGAATAA ATTATTTATA TATATTAAGT AGATTCTTAC 20531 .......... .......... .......... .......... .......... .......... 350 ATGAGTTCCA CTGAACCTGT AGTGTAAGCA GACCTGTAGC TACACTCTTG TTTTTTATTT 20471 .......... .......... .......... .......... .......... .......... 350 ATATTAGGCC ATTACAAGCT ACTCAATGCG CCAGTAATGA TTCTCTGTCT TGTGCCAATG 20411 .......... .......... .......... .......... .......... .......... 350 TTAGGATAGA CACTGACCAT CATTGACAAA AGCTAAGTTT GATAGCAAAA GGCACAACTT 20351 .......... .......... .......... .......... .......... .......... 350 TATTTCTTAA CGAAGTGCAC CGAGCAAGCG CCATGTTCGA TCATGACTAC GACCCGAACC 20291 .......... .......... .......... .......... .......... .......... 350 GCCTAGCCCC TCGTGGGCCT TGCCATAGGC AGGTTGTTAC CATTATCCAA CAATCTCCCT 20231 .......... .......... .......... .......... .......... .......... 350 CCCAACACCT GCCTCATGCA GAATGTAGCT TTTGCAAATC AAACTCATGA CCTTGGCTCT 20171 .......... .......... .......... .......... .......... .......... 350 GATACTACTT GTTAGGATCA AGCGATTATC ATCATGCCAA AAGCTATAGA TTTTGGCATA 20111 .......... .......... .......... .......... .......... .......... 350 ATGGTAAGCA CACGGTCAAC AACCAAGTAC GTGGAAATTT TTGTGTGGAT AGAGAGTTGA 20051 .......... .......... .......... .......... .......... .......... 350 ATCTAAGATG TACCACTTGA TAACATGTTA AAATTGATAT TTTCACTTCA TATTAATCTA 19991 .......... .......... .......... .......... .......... .......... 350 CTAGAAAAGG ACATTTTAGT TATGACTCCC TTCATTTCAA TTTATTTATC CTACTTCCTT 19931 .......... .......... .......... .......... .......... .......... 350 TTTTAATCCG TTTGAAAAAG AATGTCTTTT TTTTTCTTTT TGACAACTTT AATTATAGCT 19871 .......... .......... .......... .......... .......... .......... 350 TTCCAGATAA CATGGTTAAG ACTGAAAGAT TAATGAACAA TTTAATACAT TTACGCATCT 19811 .......... .......... .......... .......... .......... .......... 350 TTAGTTAAGA GTACAAGAAT CAAAGTCTTT TGTATGCCGT GCCAAGTCAA AATCAAATAA 19751 .......... .......... .......... .......... .......... .......... 350 ACAAATTGCA ATGGAGAGGG TATATATTAG GTCTTCTACA ATTTGTGGAG TAGTCAATAA 19691 .......... .......... .......... .......... .......... .......... 350 GACATCTTTG TACTCTTTAA TTTTGTTATG GATGCAAATG TAATGCATAT CTTTCTCTTA 19631 .......... .......... .......... .......... .......... .......... 350 TATGTTCTTT TCGGTCCTGA TCATAGTCAC GAGTGATTCC GGATACAGTG GAAGGGCTTG 19571 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......TCAC GAGTGATTCC GGATACAGTG GAAGGGCTTG 384 TGGAGTTTTT TCTTGACACT GAAGCTCAAG AGATTGAATT TGAGATTGCA AGAATGAGAC 19511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGTTTTT TCTTGACACT GAAGCTCAAG AGATTGAATT TGAGATTGCA AGAATGAGAC 444 CACGGTGAGT TATCTACTCT CCAATGTCAC AGCTCAGGTG GCCAAAATTT ACTGTTCTGG 19451 |||| CACG...... .......... .......... .......... .......... .......... 448 CTTCAAAGCC AGAAAATGCT ATAAGTTGTT TGAATCTTCG CGGCATTAGT TCAGATTCAG 19391 .......... .......... .......... .......... .......... .......... 448 CTCTGATAGG TTATTAAACA GTCGAGCATT TAAAGTTGCG ACCTTTTGCT TTTGATCATT 19331 .......... .......... .......... .......... .......... .......... 448 CTGTGATCAT GCACATGTAT TTCGAGTCCG TATTTTGTAA ACTTGTGCAG AAAAGCAAAA 19271 .......... .......... .......... .......... .......... .......... 448 AGCTATAAAA ATATAGACTT CATATAAAGA TCAAATTTTT GCCTCTTAAC AAGATATGAG 19211 .......... .......... .......... .......... .......... .......... 448 TATTTCTTTA TTAATGGCCA TTTTCTTGAC ATTTATGTTG TTATCAAAAT TTGAGAAAGT 19151 .......... .......... .......... .......... .......... .......... 448 ATTGGTACCT CACCCAATTT GAAGTTTGCA AACATTTTCT AGAGGAACTG GGACAAGACT 19091 .......... .......... .......... .......... .......... .......... 448 TTTATAACAT CAAATTGCAT GGGTTTCTTG TCTGTCCCTA CTATAGTTTT TATCTTCTGT 19031 .......... .......... .......... .......... .......... .......... 448 ACCTGAAAAC TTCTAACATA TCTTAGTTTG CAGATTGAAC AAAGAATTCT TTGACCATCT 18971 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATTGAAC AAAGAATTCT TTGACCATCT 475 GCAAGTCGAA CTTGGAAAGC TGCGTTTTTC TGTAAACAAA ACTCAGGTTC TTACTGAAAA 18911 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GCAAGTCGAA CTTGGAAAGC TGCGTTTTTC TGTAAACAAA ACTCAG.... .......... 521 TTTGGTTGAT TTAGTGTGAG ACAGATATGT TAATGAAATG ATACCGACCA TGATATTTTC 18851 .......... .......... .......... .......... .......... .......... 521 ACAGGCTGTG GAAGACAGAT TATTTGAACT GGAAGCA 18814 |||||| |||||||||| |||||||||| ||||||| ....GCTGTG GAAGACAGAT TATTTGAACT GGAAGCA 554 hqPGS_C08HBa0060C12.1-_SGN-E298967+ (21130 20928,20838 20692,19604 19507,18997 18925,18846 18814) ******************************************************************************** EST sequence 361 +strand 515 n (File: SGN-E255732+) 1 GTTTCTAACG GATAAAGCAC CGCGAAACTA ACTGAACTCA ATAACCAGTC ATTCAAAAGC 61 TCTCAAAAAC GGCCAACAAT GGCCGCAGCA TTCAGCAGCA GCTTTACTAG TTCCGCCATT 121 GGAGCTCAAT TCTACAGGCC CAAATTTGTA AAACCCAAGA CTTTTGTAAA CACAATTCGC 181 TGTGCTGGTA GACTAGAATG GGATCCAGAT GGTTTATTGG GTCCGCCTCA AACGGGTCAT 241 ATAGCCCGAC TCGAGTTCCA GAGACGCCTT GAGAACGATG CTGCGGCCAG AGAAGAATTT 301 GAACGGCAAG TTCGTGAAGA GAAAGAACGT CGCAGAGTTC TTCGTGAGTC ACGAGTGATT 361 CCGGATACAG TGGAAGGGCT TGTGGAGTTT TTTCTTGACA CTGAAGCTCA AGAGATTGAA 421 TTTGAGATTG CAAGAATGAG ACCACGATTG AACAAAGAAT TCTTTGACCA TCTGCAAGTC 481 GAACTTGGAA AGCTGCGTTT TTCTGTAAAC AAAAC Predicted gene structure (within gDNA segment 21737 to 18319): Exon 1 21127 20928 ( 200 n); cDNA 2 201 ( 200 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 202 348 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 349 446 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18929 ( 69 n); cDNA 447 515 ( 69 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E255732+ 1.000 514 0.998 C PGS_C08HBa0060C12.1-_SGN-E255732+ (21127 20928,20838 20692,19604 19507,18997 18929) Alignment (genomic DNA sequence = upper lines): TTTCTAACGG ATAAAGCACC GCGAAACTAA CTGAACTCAA TAACCAGTCA TTCAAAAGCT 21068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTAACGG ATAAAGCACC GCGAAACTAA CTGAACTCAA TAACCAGTCA TTCAAAAGCT 61 CTCAAAAACG GCCAACAATG GCCGCAGCAT TCAGCAGCAG CTTTACTAGT TCCGCCATTG 21008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAAACG GCCAACAATG GCCGCAGCAT TCAGCAGCAG CTTTACTAGT TCCGCCATTG 121 GAGCTCAATT CTACAGGCCC AAATTTGTAA AACCCAAGAC TTTTGTAAAC ACAATTCGCT 20948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTCAATT CTACAGGCCC AAATTTGTAA AACCCAAGAC TTTTGTAAAC ACAATTCGCT 181 GTGCTGGTAG ACTAGAATGG GTAATTTCTC TTCACTTCTG AAGCTCCTTT CAATTATAAT 20888 |||||||||| |||||||||| GTGCTGGTAG ACTAGAATGG .......... .......... .......... .......... 201 TTTACAAGTG CATTATAAAA GTGGTGAATT TTTTTATTTG TAATTACAGG ATCCAGATGG 20828 | |||||||||| .......... .......... .......... .......... .........G ATCCAGATGG 212 TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA GACGCCTTGA 20768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA GACGCCTTGA 272 GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA AAGAACGTCG 20708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA AAGAACGTCG 332 CAGAGTTCTT CGTGAGGTAA TTTTTTGAAG TTATCATCTT ATCGAAGAAT TTATAATGTT 20648 |||||||||| |||||| CAGAGTTCTT CGTGAG.... .......... .......... .......... .......... 348 TGGAGCAACA TTTTATGGGG CAGAGTAAGG ATTTCGAGTT TATAAGTTCA TGATTCTAGA 20588 .......... .......... .......... .......... .......... .......... 348 AGAAGCAACT TAGAGTATTG TGAATAAATT ATTTATATAT ATTAAGTAGA TTCTTACATG 20528 .......... .......... .......... .......... .......... .......... 348 AGTTCCACTG AACCTGTAGT GTAAGCAGAC CTGTAGCTAC ACTCTTGTTT TTTATTTATA 20468 .......... .......... .......... .......... .......... .......... 348 TTAGGCCATT ACAAGCTACT CAATGCGCCA GTAATGATTC TCTGTCTTGT GCCAATGTTA 20408 .......... .......... .......... .......... .......... .......... 348 GGATAGACAC TGACCATCAT TGACAAAAGC TAAGTTTGAT AGCAAAAGGC ACAACTTTAT 20348 .......... .......... .......... .......... .......... .......... 348 TTCTTAACGA AGTGCACCGA GCAAGCGCCA TGTTCGATCA TGACTACGAC CCGAACCGCC 20288 .......... .......... .......... .......... .......... .......... 348 TAGCCCCTCG TGGGCCTTGC CATAGGCAGG TTGTTACCAT TATCCAACAA TCTCCCTCCC 20228 .......... .......... .......... .......... .......... .......... 348 AACACCTGCC TCATGCAGAA TGTAGCTTTT GCAAATCAAA CTCATGACCT TGGCTCTGAT 20168 .......... .......... .......... .......... .......... .......... 348 ACTACTTGTT AGGATCAAGC GATTATCATC ATGCCAAAAG CTATAGATTT TGGCATAATG 20108 .......... .......... .......... .......... .......... .......... 348 GTAAGCACAC GGTCAACAAC CAAGTACGTG GAAATTTTTG TGTGGATAGA GAGTTGAATC 20048 .......... .......... .......... .......... .......... .......... 348 TAAGATGTAC CACTTGATAA CATGTTAAAA TTGATATTTT CACTTCATAT TAATCTACTA 19988 .......... .......... .......... .......... .......... .......... 348 GAAAAGGACA TTTTAGTTAT GACTCCCTTC ATTTCAATTT ATTTATCCTA CTTCCTTTTT 19928 .......... .......... .......... .......... .......... .......... 348 TAATCCGTTT GAAAAAGAAT GTCTTTTTTT TTCTTTTTGA CAACTTTAAT TATAGCTTTC 19868 .......... .......... .......... .......... .......... .......... 348 CAGATAACAT GGTTAAGACT GAAAGATTAA TGAACAATTT AATACATTTA CGCATCTTTA 19808 .......... .......... .......... .......... .......... .......... 348 GTTAAGAGTA CAAGAATCAA AGTCTTTTGT ATGCCGTGCC AAGTCAAAAT CAAATAAACA 19748 .......... .......... .......... .......... .......... .......... 348 AATTGCAATG GAGAGGGTAT ATATTAGGTC TTCTACAATT TGTGGAGTAG TCAATAAGAC 19688 .......... .......... .......... .......... .......... .......... 348 ATCTTTGTAC TCTTTAATTT TGTTATGGAT GCAAATGTAA TGCATATCTT TCTCTTATAT 19628 .......... .......... .......... .......... .......... .......... 348 GTTCTTTTCG GTCCTGATCA TAGTCACGAG TGATTCCGGA TACAGTGGAA GGGCTTGTGG 19568 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...TCACGAG TGATTCCGGA TACAGTGGAA GGGCTTGTGG 385 AGTTTTTTCT TGACACTGAA GCTCAAGAGA TTGAATTTGA GATTGCAAGA ATGAGACCAC 19508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTTTTCT TGACACTGAA GCTCAAGAGA TTGAATTTGA GATTGCAAGA ATGAGACCAC 445 GGTGAGTTAT CTACTCTCCA ATGTCACAGC TCAGGTGGCC AAAATTTACT GTTCTGGCTT 19448 | G......... .......... .......... .......... .......... .......... 446 CAAAGCCAGA AAATGCTATA AGTTGTTTGA ATCTTCGCGG CATTAGTTCA GATTCAGCTC 19388 .......... .......... .......... .......... .......... .......... 446 TGATAGGTTA TTAAACAGTC GAGCATTTAA AGTTGCGACC TTTTGCTTTT GATCATTCTG 19328 .......... .......... .......... .......... .......... .......... 446 TGATCATGCA CATGTATTTC GAGTCCGTAT TTTGTAAACT TGTGCAGAAA AGCAAAAAGC 19268 .......... .......... .......... .......... .......... .......... 446 TATAAAAATA TAGACTTCAT ATAAAGATCA AATTTTTGCC TCTTAACAAG ATATGAGTAT 19208 .......... .......... .......... .......... .......... .......... 446 TTCTTTATTA ATGGCCATTT TCTTGACATT TATGTTGTTA TCAAAATTTG AGAAAGTATT 19148 .......... .......... .......... .......... .......... .......... 446 GGTACCTCAC CCAATTTGAA GTTTGCAAAC ATTTTCTAGA GGAACTGGGA CAAGACTTTT 19088 .......... .......... .......... .......... .......... .......... 446 ATAACATCAA ATTGCATGGG TTTCTTGTCT GTCCCTACTA TAGTTTTTAT CTTCTGTACC 19028 .......... .......... .......... .......... .......... .......... 446 TGAAAACTTC TAACATATCT TAGTTTGCAG ATTGAACAAA GAATTCTTTG ACCATCTGCA 18968 |||||||||| |||||||||| |||||||||| .......... .......... .......... ATTGAACAAA GAATTCTTTG ACCATCTGCA 476 AGTCGAACTT GGAAAGCTGC GTTTTTCTGT AAACAAAAC 18929 |||||||||| |||||||||| |||||||||| ||||||||| AGTCGAACTT GGAAAGCTGC GTTTTTCTGT AAACAAAAC 515 hqPGS_C08HBa0060C12.1-_SGN-E255732+ (21127 20928,20838 20692,19604 19507,18997 18929) ******************************************************************************** EST sequence 369 +strand 464 n (File: SGN-E268168+) 1 TTCAAAAGCT CTCAAAAACG GCCAACAATG GCCGCAGCAT TCAGCAGCAG CTTTACTAGT 61 TCCGCCATTG GAGCTCAATT CTACAGGCCC AAATTTGTAA AACCCAAGAC TTTTGTAAAC 121 ACAATTCGCT GTGCTGGTAG ACTAGAATGG GATCCAGATG GTTTATTGGG TCCGCCTCAA 181 ACGGGTCATA TAGCCCGACT CGAGTTCCAG AGACGCCTTG AGAACGATGC TGCGGCCAGA 241 GAAGAATTTG AACGGCAAGT TCGTGAAGAG AAAGAACGTC GCAGAGTTCT TCGTGAGTCA 301 CGAGTGATTC CGGATACAGT GGAAGGGCTT GTGGAGTTTT TTCTTGACAC TGAAGCTCAA 361 GAGATTGAAT TTGAGATTGC AAGAATGAGA CCACGATTGA ACAAAGAATT CTTTGACCAT 421 CTGCAAGTCG AACTTGGAAA GCTGCGTTTT TCTGTAAACA AAAC Predicted gene structure (within gDNA segment 21677 to 18319): Exon 1 21077 20928 ( 150 n); cDNA 1 150 ( 150 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 151 297 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 298 395 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18929 ( 69 n); cDNA 396 464 ( 69 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E268168+ 1.000 464 1.000 C PGS_C08HBa0060C12.1-_SGN-E268168+ (21077 20928,20838 20692,19604 19507,18997 18929) Alignment (genomic DNA sequence = upper lines): TTCAAAAGCT CTCAAAAACG GCCAACAATG GCCGCAGCAT TCAGCAGCAG CTTTACTAGT 21018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAAGCT CTCAAAAACG GCCAACAATG GCCGCAGCAT TCAGCAGCAG CTTTACTAGT 60 TCCGCCATTG GAGCTCAATT CTACAGGCCC AAATTTGTAA AACCCAAGAC TTTTGTAAAC 20958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGCCATTG GAGCTCAATT CTACAGGCCC AAATTTGTAA AACCCAAGAC TTTTGTAAAC 120 ACAATTCGCT GTGCTGGTAG ACTAGAATGG GTAATTTCTC TTCACTTCTG AAGCTCCTTT 20898 |||||||||| |||||||||| |||||||||| ACAATTCGCT GTGCTGGTAG ACTAGAATGG .......... .......... .......... 150 CAATTATAAT TTTACAAGTG CATTATAAAA GTGGTGAATT TTTTTATTTG TAATTACAGG 20838 | .......... .......... .......... .......... .......... .........G 151 ATCCAGATGG TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA 20778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAGATGG TTTATTGGGT CCGCCTCAAA CGGGTCATAT AGCCCGACTC GAGTTCCAGA 211 GACGCCTTGA GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA 20718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGCCTTGA GAACGATGCT GCGGCCAGAG AAGAATTTGA ACGGCAAGTT CGTGAAGAGA 271 AAGAACGTCG CAGAGTTCTT CGTGAGGTAA TTTTTTGAAG TTATCATCTT ATCGAAGAAT 20658 |||||||||| |||||||||| |||||| AAGAACGTCG CAGAGTTCTT CGTGAG.... .......... .......... .......... 297 TTATAATGTT TGGAGCAACA TTTTATGGGG CAGAGTAAGG ATTTCGAGTT TATAAGTTCA 20598 .......... .......... .......... .......... .......... .......... 297 TGATTCTAGA AGAAGCAACT TAGAGTATTG TGAATAAATT ATTTATATAT ATTAAGTAGA 20538 .......... .......... .......... .......... .......... .......... 297 TTCTTACATG AGTTCCACTG AACCTGTAGT GTAAGCAGAC CTGTAGCTAC ACTCTTGTTT 20478 .......... .......... .......... .......... .......... .......... 297 TTTATTTATA TTAGGCCATT ACAAGCTACT CAATGCGCCA GTAATGATTC TCTGTCTTGT 20418 .......... .......... .......... .......... .......... .......... 297 GCCAATGTTA GGATAGACAC TGACCATCAT TGACAAAAGC TAAGTTTGAT AGCAAAAGGC 20358 .......... .......... .......... .......... .......... .......... 297 ACAACTTTAT TTCTTAACGA AGTGCACCGA GCAAGCGCCA TGTTCGATCA TGACTACGAC 20298 .......... .......... .......... .......... .......... .......... 297 CCGAACCGCC TAGCCCCTCG TGGGCCTTGC CATAGGCAGG TTGTTACCAT TATCCAACAA 20238 .......... .......... .......... .......... .......... .......... 297 TCTCCCTCCC AACACCTGCC TCATGCAGAA TGTAGCTTTT GCAAATCAAA CTCATGACCT 20178 .......... .......... .......... .......... .......... .......... 297 TGGCTCTGAT ACTACTTGTT AGGATCAAGC GATTATCATC ATGCCAAAAG CTATAGATTT 20118 .......... .......... .......... .......... .......... .......... 297 TGGCATAATG GTAAGCACAC GGTCAACAAC CAAGTACGTG GAAATTTTTG TGTGGATAGA 20058 .......... .......... .......... .......... .......... .......... 297 GAGTTGAATC TAAGATGTAC CACTTGATAA CATGTTAAAA TTGATATTTT CACTTCATAT 19998 .......... .......... .......... .......... .......... .......... 297 TAATCTACTA GAAAAGGACA TTTTAGTTAT GACTCCCTTC ATTTCAATTT ATTTATCCTA 19938 .......... .......... .......... .......... .......... .......... 297 CTTCCTTTTT TAATCCGTTT GAAAAAGAAT GTCTTTTTTT TTCTTTTTGA CAACTTTAAT 19878 .......... .......... .......... .......... .......... .......... 297 TATAGCTTTC CAGATAACAT GGTTAAGACT GAAAGATTAA TGAACAATTT AATACATTTA 19818 .......... .......... .......... .......... .......... .......... 297 CGCATCTTTA GTTAAGAGTA CAAGAATCAA AGTCTTTTGT ATGCCGTGCC AAGTCAAAAT 19758 .......... .......... .......... .......... .......... .......... 297 CAAATAAACA AATTGCAATG GAGAGGGTAT ATATTAGGTC TTCTACAATT TGTGGAGTAG 19698 .......... .......... .......... .......... .......... .......... 297 TCAATAAGAC ATCTTTGTAC TCTTTAATTT TGTTATGGAT GCAAATGTAA TGCATATCTT 19638 .......... .......... .......... .......... .......... .......... 297 TCTCTTATAT GTTCTTTTCG GTCCTGATCA TAGTCACGAG TGATTCCGGA TACAGTGGAA 19578 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TCACGAG TGATTCCGGA TACAGTGGAA 324 GGGCTTGTGG AGTTTTTTCT TGACACTGAA GCTCAAGAGA TTGAATTTGA GATTGCAAGA 19518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTTGTGG AGTTTTTTCT TGACACTGAA GCTCAAGAGA TTGAATTTGA GATTGCAAGA 384 ATGAGACCAC GGTGAGTTAT CTACTCTCCA ATGTCACAGC TCAGGTGGCC AAAATTTACT 19458 |||||||||| | ATGAGACCAC G......... .......... .......... .......... .......... 395 GTTCTGGCTT CAAAGCCAGA AAATGCTATA AGTTGTTTGA ATCTTCGCGG CATTAGTTCA 19398 .......... .......... .......... .......... .......... .......... 395 GATTCAGCTC TGATAGGTTA TTAAACAGTC GAGCATTTAA AGTTGCGACC TTTTGCTTTT 19338 .......... .......... .......... .......... .......... .......... 395 GATCATTCTG TGATCATGCA CATGTATTTC GAGTCCGTAT TTTGTAAACT TGTGCAGAAA 19278 .......... .......... .......... .......... .......... .......... 395 AGCAAAAAGC TATAAAAATA TAGACTTCAT ATAAAGATCA AATTTTTGCC TCTTAACAAG 19218 .......... .......... .......... .......... .......... .......... 395 ATATGAGTAT TTCTTTATTA ATGGCCATTT TCTTGACATT TATGTTGTTA TCAAAATTTG 19158 .......... .......... .......... .......... .......... .......... 395 AGAAAGTATT GGTACCTCAC CCAATTTGAA GTTTGCAAAC ATTTTCTAGA GGAACTGGGA 19098 .......... .......... .......... .......... .......... .......... 395 CAAGACTTTT ATAACATCAA ATTGCATGGG TTTCTTGTCT GTCCCTACTA TAGTTTTTAT 19038 .......... .......... .......... .......... .......... .......... 395 CTTCTGTACC TGAAAACTTC TAACATATCT TAGTTTGCAG ATTGAACAAA GAATTCTTTG 18978 |||||||||| |||||||||| .......... .......... .......... .......... ATTGAACAAA GAATTCTTTG 415 ACCATCTGCA AGTCGAACTT GGAAAGCTGC GTTTTTCTGT AAACAAAAC 18929 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACCATCTGCA AGTCGAACTT GGAAAGCTGC GTTTTTCTGT AAACAAAAC 464 hqPGS_C08HBa0060C12.1-_SGN-E268168+ (21077 20928,20838 20692,19604 19507,18997 18929) ******************************************************************************** EST sequence 386 +strand 528 n (File: SGN-E320589+) 1 GAAAATTGTA GATAAGGGTG TGCGCATTTC TAACGGATAA AGCACCGCGA AACTAACTGA 61 ACTCAATAAC CAGTCATTCA AAAGCTCTCA AAAACGGCCA ACAATGGCCG CAGCATTCAG 121 CAGCAGCTTT ACTAGTTCCG CCATTGGAGC TCAATTCTAC AGGCCCAAAT TTGTAAAACC 181 CAAGACTTTT GTAAACACAA TTCGCTGTGC TGGTAGACTA GAATGGGATC CAGATGGTTT 241 ATTGGGTCCG CCTCAGACGG GTCATATAGC CCGACTCGAG TTCCAGAGAC GCCTTGAGAA 301 CGATGCTGCG GCCAGAGAAG AATTTGAACG GCAAGTTCGT GAAGAGAAAG AACGTCGCAG 361 AGTTCTTCGT GAGTCACGAG TGATTCCGGA TACAGTGGAA GGGCTTGTGG AGTTTTTTCT 421 TGACACTGAA GCTCAAGAGA TTGAATTTGA GATTGCAAGA ATGAGACCAC GATTGAACAA 481 AGAATTCTTT GACCATCTGC AAGTCGAACT TGGAAAGCTG CGTTTTTC Predicted gene structure (within gDNA segment 21753 to 18331): Exon 1 21153 20928 ( 226 n); cDNA 1 226 ( 226 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 20838 20692 ( 147 n); cDNA 227 373 ( 147 n); score: 0.993 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 374 471 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18941 ( 57 n); cDNA 472 528 ( 57 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E320589+ 0.998 528 1.000 C PGS_C08HBa0060C12.1-_SGN-E320589+ (21153 20928,20838 20692,19604 19507,18997 18941) Alignment (genomic DNA sequence = upper lines): GAAAATTGTA GATAAGGGTG TGCGCATTTC TAACGGATAA AGCACCGCGA AACTAACTGA 21094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATTGTA GATAAGGGTG TGCGCATTTC TAACGGATAA AGCACCGCGA AACTAACTGA 60 ACTCAATAAC CAGTCATTCA AAAGCTCTCA AAAACGGCCA ACAATGGCCG CAGCATTCAG 21034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCAATAAC CAGTCATTCA AAAGCTCTCA AAAACGGCCA ACAATGGCCG CAGCATTCAG 120 CAGCAGCTTT ACTAGTTCCG CCATTGGAGC TCAATTCTAC AGGCCCAAAT TTGTAAAACC 20974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGCTTT ACTAGTTCCG CCATTGGAGC TCAATTCTAC AGGCCCAAAT TTGTAAAACC 180 CAAGACTTTT GTAAACACAA TTCGCTGTGC TGGTAGACTA GAATGGGTAA TTTCTCTTCA 20914 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CAAGACTTTT GTAAACACAA TTCGCTGTGC TGGTAGACTA GAATGG.... .......... 226 CTTCTGAAGC TCCTTTCAAT TATAATTTTA CAAGTGCATT ATAAAAGTGG TGAATTTTTT 20854 .......... .......... .......... .......... .......... .......... 226 TATTTGTAAT TACAGGATCC AGATGGTTTA TTGGGTCCGC CTCAAACGGG TCATATAGCC 20794 ||||| |||||||||| |||||||||| |||| ||||| |||||||||| .......... .....GATCC AGATGGTTTA TTGGGTCCGC CTCAGACGGG TCATATAGCC 271 CGACTCGAGT TCCAGAGACG CCTTGAGAAC GATGCTGCGG CCAGAGAAGA ATTTGAACGG 20734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACTCGAGT TCCAGAGACG CCTTGAGAAC GATGCTGCGG CCAGAGAAGA ATTTGAACGG 331 CAAGTTCGTG AAGAGAAAGA ACGTCGCAGA GTTCTTCGTG AGGTAATTTT TTGAAGTTAT 20674 |||||||||| |||||||||| |||||||||| |||||||||| || CAAGTTCGTG AAGAGAAAGA ACGTCGCAGA GTTCTTCGTG AG........ .......... 373 CATCTTATCG AAGAATTTAT AATGTTTGGA GCAACATTTT ATGGGGCAGA GTAAGGATTT 20614 .......... .......... .......... .......... .......... .......... 373 CGAGTTTATA AGTTCATGAT TCTAGAAGAA GCAACTTAGA GTATTGTGAA TAAATTATTT 20554 .......... .......... .......... .......... .......... .......... 373 ATATATATTA AGTAGATTCT TACATGAGTT CCACTGAACC TGTAGTGTAA GCAGACCTGT 20494 .......... .......... .......... .......... .......... .......... 373 AGCTACACTC TTGTTTTTTA TTTATATTAG GCCATTACAA GCTACTCAAT GCGCCAGTAA 20434 .......... .......... .......... .......... .......... .......... 373 TGATTCTCTG TCTTGTGCCA ATGTTAGGAT AGACACTGAC CATCATTGAC AAAAGCTAAG 20374 .......... .......... .......... .......... .......... .......... 373 TTTGATAGCA AAAGGCACAA CTTTATTTCT TAACGAAGTG CACCGAGCAA GCGCCATGTT 20314 .......... .......... .......... .......... .......... .......... 373 CGATCATGAC TACGACCCGA ACCGCCTAGC CCCTCGTGGG CCTTGCCATA GGCAGGTTGT 20254 .......... .......... .......... .......... .......... .......... 373 TACCATTATC CAACAATCTC CCTCCCAACA CCTGCCTCAT GCAGAATGTA GCTTTTGCAA 20194 .......... .......... .......... .......... .......... .......... 373 ATCAAACTCA TGACCTTGGC TCTGATACTA CTTGTTAGGA TCAAGCGATT ATCATCATGC 20134 .......... .......... .......... .......... .......... .......... 373 CAAAAGCTAT AGATTTTGGC ATAATGGTAA GCACACGGTC AACAACCAAG TACGTGGAAA 20074 .......... .......... .......... .......... .......... .......... 373 TTTTTGTGTG GATAGAGAGT TGAATCTAAG ATGTACCACT TGATAACATG TTAAAATTGA 20014 .......... .......... .......... .......... .......... .......... 373 TATTTTCACT TCATATTAAT CTACTAGAAA AGGACATTTT AGTTATGACT CCCTTCATTT 19954 .......... .......... .......... .......... .......... .......... 373 CAATTTATTT ATCCTACTTC CTTTTTTAAT CCGTTTGAAA AAGAATGTCT TTTTTTTTCT 19894 .......... .......... .......... .......... .......... .......... 373 TTTTGACAAC TTTAATTATA GCTTTCCAGA TAACATGGTT AAGACTGAAA GATTAATGAA 19834 .......... .......... .......... .......... .......... .......... 373 CAATTTAATA CATTTACGCA TCTTTAGTTA AGAGTACAAG AATCAAAGTC TTTTGTATGC 19774 .......... .......... .......... .......... .......... .......... 373 CGTGCCAAGT CAAAATCAAA TAAACAAATT GCAATGGAGA GGGTATATAT TAGGTCTTCT 19714 .......... .......... .......... .......... .......... .......... 373 ACAATTTGTG GAGTAGTCAA TAAGACATCT TTGTACTCTT TAATTTTGTT ATGGATGCAA 19654 .......... .......... .......... .......... .......... .......... 373 ATGTAATGCA TATCTTTCTC TTATATGTTC TTTTCGGTCC TGATCATAGT CACGAGTGAT 19594 | |||||||||| .......... .......... .......... .......... .........T CACGAGTGAT 384 TCCGGATACA GTGGAAGGGC TTGTGGAGTT TTTTCTTGAC ACTGAAGCTC AAGAGATTGA 19534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGATACA GTGGAAGGGC TTGTGGAGTT TTTTCTTGAC ACTGAAGCTC AAGAGATTGA 444 ATTTGAGATT GCAAGAATGA GACCACGGTG AGTTATCTAC TCTCCAATGT CACAGCTCAG 19474 |||||||||| |||||||||| ||||||| ATTTGAGATT GCAAGAATGA GACCACG... .......... .......... .......... 471 GTGGCCAAAA TTTACTGTTC TGGCTTCAAA GCCAGAAAAT GCTATAAGTT GTTTGAATCT 19414 .......... .......... .......... .......... .......... .......... 471 TCGCGGCATT AGTTCAGATT CAGCTCTGAT AGGTTATTAA ACAGTCGAGC ATTTAAAGTT 19354 .......... .......... .......... .......... .......... .......... 471 GCGACCTTTT GCTTTTGATC ATTCTGTGAT CATGCACATG TATTTCGAGT CCGTATTTTG 19294 .......... .......... .......... .......... .......... .......... 471 TAAACTTGTG CAGAAAAGCA AAAAGCTATA AAAATATAGA CTTCATATAA AGATCAAATT 19234 .......... .......... .......... .......... .......... .......... 471 TTTGCCTCTT AACAAGATAT GAGTATTTCT TTATTAATGG CCATTTTCTT GACATTTATG 19174 .......... .......... .......... .......... .......... .......... 471 TTGTTATCAA AATTTGAGAA AGTATTGGTA CCTCACCCAA TTTGAAGTTT GCAAACATTT 19114 .......... .......... .......... .......... .......... .......... 471 TCTAGAGGAA CTGGGACAAG ACTTTTATAA CATCAAATTG CATGGGTTTC TTGTCTGTCC 19054 .......... .......... .......... .......... .......... .......... 471 CTACTATAGT TTTTATCTTC TGTACCTGAA AACTTCTAAC ATATCTTAGT TTGCAGATTG 18994 |||| .......... .......... .......... .......... .......... ......ATTG 475 AACAAAGAAT TCTTTGACCA TCTGCAAGTC GAACTTGGAA AGCTGCGTTT TTC 18941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AACAAAGAAT TCTTTGACCA TCTGCAAGTC GAACTTGGAA AGCTGCGTTT TTC 528 hqPGS_C08HBa0060C12.1-_SGN-E320589+ (21153 20928,20838 20692,19604 19507,18997 18941) ******************************************************************************** EST sequence 402 +strand 484 n (File: SGN-E292918+) 1 CACCGCGAAA CTAACTGAAC TCAATAACCA GTCATTCAAA AGCTCTCAAA AACGGCCAAC 61 AATGGCCGCA GCATTCAGCA GCAGCTTTAC TAGTTCCGCC ATTGGAGCTC AATTCTACAG 121 GCCCAAATTT GTAAAACCCA AGACTTTTGT AAACACAATT CGCTGTGCTG GTAGACTAGA 181 ATGGGATCCA GATGGTTTAT TGGGTCCGCC TCAAACGGGT CATATAGCCC GACTCGAGTT 241 CCAGAGACGC CTTGAGAACG ATGCTGCGGC CAGAGAAGAA TTTGAACGGC AAGTTCGTGA 301 AGAGAAAGAA CGTCGCAGAG TTCTTCGTGA GTCACGAGTG ATTCCGGATA CAGTGGAAGG 361 GCTTGTGGAG TTTTTTCTTG ACACTGAAGC TCAAGAGATT GAATTTGAGA TTGCAAGAAT 421 GAGACCACGA TTGAACAAAG AATTCTTTGA CCATCTGCAA GTCGAACTTG GAAAGCTGCG 481 TTTT Predicted gene structure (within gDNA segment 21711 to 18333): Exon 1 21111 20928 ( 184 n); cDNA 1 184 ( 184 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 185 331 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 19604 19507 ( 98 n); cDNA 332 429 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 18997 18943 ( 55 n); cDNA 430 484 ( 55 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E292918+ 1.000 484 1.000 C PGS_C08HBa0060C12.1-_SGN-E292918+ (21111 20928,20838 20692,19604 19507,18997 18943) Alignment (genomic DNA sequence = upper lines): CACCGCGAAA CTAACTGAAC TCAATAACCA GTCATTCAAA AGCTCTCAAA AACGGCCAAC 21052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGCGAAA CTAACTGAAC TCAATAACCA GTCATTCAAA AGCTCTCAAA AACGGCCAAC 60 AATGGCCGCA GCATTCAGCA GCAGCTTTAC TAGTTCCGCC ATTGGAGCTC AATTCTACAG 20992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCCGCA GCATTCAGCA GCAGCTTTAC TAGTTCCGCC ATTGGAGCTC AATTCTACAG 120 GCCCAAATTT GTAAAACCCA AGACTTTTGT AAACACAATT CGCTGTGCTG GTAGACTAGA 20932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAAATTT GTAAAACCCA AGACTTTTGT AAACACAATT CGCTGTGCTG GTAGACTAGA 180 ATGGGTAATT TCTCTTCACT TCTGAAGCTC CTTTCAATTA TAATTTTACA AGTGCATTAT 20872 |||| ATGG...... .......... .......... .......... .......... .......... 184 AAAAGTGGTG AATTTTTTTA TTTGTAATTA CAGGATCCAG ATGGTTTATT GGGTCCGCCT 20812 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GATCCAG ATGGTTTATT GGGTCCGCCT 211 CAAACGGGTC ATATAGCCCG ACTCGAGTTC CAGAGACGCC TTGAGAACGA TGCTGCGGCC 20752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACGGGTC ATATAGCCCG ACTCGAGTTC CAGAGACGCC TTGAGAACGA TGCTGCGGCC 271 AGAGAAGAAT TTGAACGGCA AGTTCGTGAA GAGAAAGAAC GTCGCAGAGT TCTTCGTGAG 20692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAAGAAT TTGAACGGCA AGTTCGTGAA GAGAAAGAAC GTCGCAGAGT TCTTCGTGAG 331 GTAATTTTTT GAAGTTATCA TCTTATCGAA GAATTTATAA TGTTTGGAGC AACATTTTAT 20632 .......... .......... .......... .......... .......... .......... 331 GGGGCAGAGT AAGGATTTCG AGTTTATAAG TTCATGATTC TAGAAGAAGC AACTTAGAGT 20572 .......... .......... .......... .......... .......... .......... 331 ATTGTGAATA AATTATTTAT ATATATTAAG TAGATTCTTA CATGAGTTCC ACTGAACCTG 20512 .......... .......... .......... .......... .......... .......... 331 TAGTGTAAGC AGACCTGTAG CTACACTCTT GTTTTTTATT TATATTAGGC CATTACAAGC 20452 .......... .......... .......... .......... .......... .......... 331 TACTCAATGC GCCAGTAATG ATTCTCTGTC TTGTGCCAAT GTTAGGATAG ACACTGACCA 20392 .......... .......... .......... .......... .......... .......... 331 TCATTGACAA AAGCTAAGTT TGATAGCAAA AGGCACAACT TTATTTCTTA ACGAAGTGCA 20332 .......... .......... .......... .......... .......... .......... 331 CCGAGCAAGC GCCATGTTCG ATCATGACTA CGACCCGAAC CGCCTAGCCC CTCGTGGGCC 20272 .......... .......... .......... .......... .......... .......... 331 TTGCCATAGG CAGGTTGTTA CCATTATCCA ACAATCTCCC TCCCAACACC TGCCTCATGC 20212 .......... .......... .......... .......... .......... .......... 331 AGAATGTAGC TTTTGCAAAT CAAACTCATG ACCTTGGCTC TGATACTACT TGTTAGGATC 20152 .......... .......... .......... .......... .......... .......... 331 AAGCGATTAT CATCATGCCA AAAGCTATAG ATTTTGGCAT AATGGTAAGC ACACGGTCAA 20092 .......... .......... .......... .......... .......... .......... 331 CAACCAAGTA CGTGGAAATT TTTGTGTGGA TAGAGAGTTG AATCTAAGAT GTACCACTTG 20032 .......... .......... .......... .......... .......... .......... 331 ATAACATGTT AAAATTGATA TTTTCACTTC ATATTAATCT ACTAGAAAAG GACATTTTAG 19972 .......... .......... .......... .......... .......... .......... 331 TTATGACTCC CTTCATTTCA ATTTATTTAT CCTACTTCCT TTTTTAATCC GTTTGAAAAA 19912 .......... .......... .......... .......... .......... .......... 331 GAATGTCTTT TTTTTTCTTT TTGACAACTT TAATTATAGC TTTCCAGATA ACATGGTTAA 19852 .......... .......... .......... .......... .......... .......... 331 GACTGAAAGA TTAATGAACA ATTTAATACA TTTACGCATC TTTAGTTAAG AGTACAAGAA 19792 .......... .......... .......... .......... .......... .......... 331 TCAAAGTCTT TTGTATGCCG TGCCAAGTCA AAATCAAATA AACAAATTGC AATGGAGAGG 19732 .......... .......... .......... .......... .......... .......... 331 GTATATATTA GGTCTTCTAC AATTTGTGGA GTAGTCAATA AGACATCTTT GTACTCTTTA 19672 .......... .......... .......... .......... .......... .......... 331 ATTTTGTTAT GGATGCAAAT GTAATGCATA TCTTTCTCTT ATATGTTCTT TTCGGTCCTG 19612 .......... .......... .......... .......... .......... .......... 331 ATCATAGTCA CGAGTGATTC CGGATACAGT GGAAGGGCTT GTGGAGTTTT TTCTTGACAC 19552 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TCA CGAGTGATTC CGGATACAGT GGAAGGGCTT GTGGAGTTTT TTCTTGACAC 384 TGAAGCTCAA GAGATTGAAT TTGAGATTGC AAGAATGAGA CCACGGTGAG TTATCTACTC 19492 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGAAGCTCAA GAGATTGAAT TTGAGATTGC AAGAATGAGA CCACG..... .......... 429 TCCAATGTCA CAGCTCAGGT GGCCAAAATT TACTGTTCTG GCTTCAAAGC CAGAAAATGC 19432 .......... .......... .......... .......... .......... .......... 429 TATAAGTTGT TTGAATCTTC GCGGCATTAG TTCAGATTCA GCTCTGATAG GTTATTAAAC 19372 .......... .......... .......... .......... .......... .......... 429 AGTCGAGCAT TTAAAGTTGC GACCTTTTGC TTTTGATCAT TCTGTGATCA TGCACATGTA 19312 .......... .......... .......... .......... .......... .......... 429 TTTCGAGTCC GTATTTTGTA AACTTGTGCA GAAAAGCAAA AAGCTATAAA AATATAGACT 19252 .......... .......... .......... .......... .......... .......... 429 TCATATAAAG ATCAAATTTT TGCCTCTTAA CAAGATATGA GTATTTCTTT ATTAATGGCC 19192 .......... .......... .......... .......... .......... .......... 429 ATTTTCTTGA CATTTATGTT GTTATCAAAA TTTGAGAAAG TATTGGTACC TCACCCAATT 19132 .......... .......... .......... .......... .......... .......... 429 TGAAGTTTGC AAACATTTTC TAGAGGAACT GGGACAAGAC TTTTATAACA TCAAATTGCA 19072 .......... .......... .......... .......... .......... .......... 429 TGGGTTTCTT GTCTGTCCCT ACTATAGTTT TTATCTTCTG TACCTGAAAA CTTCTAACAT 19012 .......... .......... .......... .......... .......... .......... 429 ATCTTAGTTT GCAGATTGAA CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG 18952 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....ATTGAA CAAAGAATTC TTTGACCATC TGCAAGTCGA ACTTGGAAAG 475 CTGCGTTTT 18943 ||||||||| CTGCGTTTT 484 hqPGS_C08HBa0060C12.1-_SGN-E292918+ (21111 20928,20838 20692,19604 19507,18997 18943) ******************************************************************************** EST sequence 392 +strand 429 n (File: SGN-E322717+) 1 ATTGTAGATA AGGGTGTGCG CATTTCTAAC GGATAAAGCA CCGCGAAACT AACTGAACTC 61 AATAACCAGT CATTCAAAAG CTCTCAAAAA CGGCCAACAA TGGCCGCAGC ATTCAGCAGC 121 AGCTTTACTA GTTCCGCCAT TGGAGCTCAA TTCTACAGGC CCAAATTTGT AAAACCCAAG 181 ACTTTTGTAA ACACAATTCG CTGTGCTGGT AGACTAGAAT GGGATCCAGA TGGTTTATTG 241 GGTCCGCCTC AAACGGGTCA TATAGCNCGA CTCGAGTTCC AGAGACGCCT TGAGAACGAT 301 GCTGCGGCCA GAGAAGAATT TGAACGGCAA GTTCGTGAAG AGAAAGAACG TCGCAGAGTT 361 CTTCGTGAGT CACGAGTGAT TCCGGATACA GTGGAAGGGC TTGTGGGGAG TTTTTTCTTG 421 ACACTGAAG Predicted gene structure (within gDNA segment 21749 to 18937): Exon 1 21149 20928 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 20838 20692 ( 147 n); cDNA 223 369 ( 147 n); score: 0.993 Intron 2 20691 19605 (1087 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 0.90) Exon 3 19604 19547 ( 58 n); cDNA 370 429 ( 60 n); score: 0.914 MATCH C08HBa0060C12.1- SGN-E322717+ 0.986 427 0.995 C PGS_C08HBa0060C12.1-_SGN-E322717+ (21149 20928,20838 20692,19604 19547) Alignment (genomic DNA sequence = upper lines): ATTGTAGATA AGGGTGTGCG CATTTCTAAC GGATAAAGCA CCGCGAAACT AACTGAACTC 21090 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTAGATA AGGGTGTGCG CATTTCTAAC GGATAAAGCA CCGCGAAACT AACTGAACTC 60 AATAACCAGT CATTCAAAAG CTCTCAAAAA CGGCCAACAA TGGCCGCAGC ATTCAGCAGC 21030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAACCAGT CATTCAAAAG CTCTCAAAAA CGGCCAACAA TGGCCGCAGC ATTCAGCAGC 120 AGCTTTACTA GTTCCGCCAT TGGAGCTCAA TTCTACAGGC CCAAATTTGT AAAACCCAAG 20970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTACTA GTTCCGCCAT TGGAGCTCAA TTCTACAGGC CCAAATTTGT AAAACCCAAG 180 ACTTTTGTAA ACACAATTCG CTGTGCTGGT AGACTAGAAT GGGTAATTTC TCTTCACTTC 20910 |||||||||| |||||||||| |||||||||| |||||||||| || ACTTTTGTAA ACACAATTCG CTGTGCTGGT AGACTAGAAT GG........ .......... 222 TGAAGCTCCT TTCAATTATA ATTTTACAAG TGCATTATAA AAGTGGTGAA TTTTTTTATT 20850 .......... .......... .......... .......... .......... .......... 222 TGTAATTACA GGATCCAGAT GGTTTATTGG GTCCGCCTCA AACGGGTCAT ATAGCCCGAC 20790 ||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| .......... .GATCCAGAT GGTTTATTGG GTCCGCCTCA AACGGGTCAT ATAGCNCGAC 271 TCGAGTTCCA GAGACGCCTT GAGAACGATG CTGCGGCCAG AGAAGAATTT GAACGGCAAG 20730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGTTCCA GAGACGCCTT GAGAACGATG CTGCGGCCAG AGAAGAATTT GAACGGCAAG 331 TTCGTGAAGA GAAAGAACGT CGCAGAGTTC TTCGTGAGGT AATTTTTTGA AGTTATCATC 20670 |||||||||| |||||||||| |||||||||| |||||||| TTCGTGAAGA GAAAGAACGT CGCAGAGTTC TTCGTGAG.. .......... .......... 369 TTATCGAAGA ATTTATAATG TTTGGAGCAA CATTTTATGG GGCAGAGTAA GGATTTCGAG 20610 .......... .......... .......... .......... .......... .......... 369 TTTATAAGTT CATGATTCTA GAAGAAGCAA CTTAGAGTAT TGTGAATAAA TTATTTATAT 20550 .......... .......... .......... .......... .......... .......... 369 ATATTAAGTA GATTCTTACA TGAGTTCCAC TGAACCTGTA GTGTAAGCAG ACCTGTAGCT 20490 .......... .......... .......... .......... .......... .......... 369 ACACTCTTGT TTTTTATTTA TATTAGGCCA TTACAAGCTA CTCAATGCGC CAGTAATGAT 20430 .......... .......... .......... .......... .......... .......... 369 TCTCTGTCTT GTGCCAATGT TAGGATAGAC ACTGACCATC ATTGACAAAA GCTAAGTTTG 20370 .......... .......... .......... .......... .......... .......... 369 ATAGCAAAAG GCACAACTTT ATTTCTTAAC GAAGTGCACC GAGCAAGCGC CATGTTCGAT 20310 .......... .......... .......... .......... .......... .......... 369 CATGACTACG ACCCGAACCG CCTAGCCCCT CGTGGGCCTT GCCATAGGCA GGTTGTTACC 20250 .......... .......... .......... .......... .......... .......... 369 ATTATCCAAC AATCTCCCTC CCAACACCTG CCTCATGCAG AATGTAGCTT TTGCAAATCA 20190 .......... .......... .......... .......... .......... .......... 369 AACTCATGAC CTTGGCTCTG ATACTACTTG TTAGGATCAA GCGATTATCA TCATGCCAAA 20130 .......... .......... .......... .......... .......... .......... 369 AGCTATAGAT TTTGGCATAA TGGTAAGCAC ACGGTCAACA ACCAAGTACG TGGAAATTTT 20070 .......... .......... .......... .......... .......... .......... 369 TGTGTGGATA GAGAGTTGAA TCTAAGATGT ACCACTTGAT AACATGTTAA AATTGATATT 20010 .......... .......... .......... .......... .......... .......... 369 TTCACTTCAT ATTAATCTAC TAGAAAAGGA CATTTTAGTT ATGACTCCCT TCATTTCAAT 19950 .......... .......... .......... .......... .......... .......... 369 TTATTTATCC TACTTCCTTT TTTAATCCGT TTGAAAAAGA ATGTCTTTTT TTTTCTTTTT 19890 .......... .......... .......... .......... .......... .......... 369 GACAACTTTA ATTATAGCTT TCCAGATAAC ATGGTTAAGA CTGAAAGATT AATGAACAAT 19830 .......... .......... .......... .......... .......... .......... 369 TTAATACATT TACGCATCTT TAGTTAAGAG TACAAGAATC AAAGTCTTTT GTATGCCGTG 19770 .......... .......... .......... .......... .......... .......... 369 CCAAGTCAAA ATCAAATAAA CAAATTGCAA TGGAGAGGGT ATATATTAGG TCTTCTACAA 19710 .......... .......... .......... .......... .......... .......... 369 TTTGTGGAGT AGTCAATAAG ACATCTTTGT ACTCTTTAAT TTTGTTATGG ATGCAAATGT 19650 .......... .......... .......... .......... .......... .......... 369 AATGCATATC TTTCTCTTAT ATGTTCTTTT CGGTCCTGAT CATAGTCACG AGTGATTCCG 19590 ||||| |||||||||| .......... .......... .......... .......... .....TCACG AGTGATTCCG 384 GATACAGTGG AAGGGCTTGT --GGAGTTTT TTCTTGACAC TGAAG 19547 |||||||||| |||||||||| |||||||| |||||||||| ||||| GATACAGTGG AAGGGCTTGT GGGGAGTTTT TTCTTGACAC TGAAG 429 hqPGS_C08HBa0060C12.1-_SGN-E322717+ (21149 20928,20838 20692,19604 19547) ******************************************************************************** EST sequence 350 +strand 304 n (File: SGN-E204741+) 1 AAAAGCTCTC AAAAACGGCC AACAATGGCC GCAGCATTCA GCAGCAGCTT TACTAGTTCC 61 GCCATTGGAG CTCAATTCTA CAGGCCCAAA TTTGTAAAAC CCAAGACTTT TGTAAACACA 121 ATTCGCTGTG CTGGTAGACT AGAATGGGAT CCAGATGGTT TATTGGGTCC GCCTCAAACG 181 GGTCATATAG CCCGACTCGA GTTCCAGAGA CGCCTTGAGA ACGATGCTGC GGCCAGAGAA 241 GAATTTGAAC GGCAAGTTCG TGAAGAGAAA GAACGTCGCA GAGTTCTTCG TGAGTCACGA 301 GTGA Predicted gene structure (within gDNA segment 21674 to 19982): Exon 1 21074 20928 ( 147 n); cDNA 1 147 ( 147 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 20838 20692 ( 147 n); cDNA 148 294 ( 147 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E204741+ 1.000 294 0.967 C PGS_C08HBa0060C12.1-_SGN-E204741+ (21074 20928,20838 20692) Alignment (genomic DNA sequence = upper lines): AAAAGCTCTC AAAAACGGCC AACAATGGCC GCAGCATTCA GCAGCAGCTT TACTAGTTCC 21015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCTCTC AAAAACGGCC AACAATGGCC GCAGCATTCA GCAGCAGCTT TACTAGTTCC 60 GCCATTGGAG CTCAATTCTA CAGGCCCAAA TTTGTAAAAC CCAAGACTTT TGTAAACACA 20955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATTGGAG CTCAATTCTA CAGGCCCAAA TTTGTAAAAC CCAAGACTTT TGTAAACACA 120 ATTCGCTGTG CTGGTAGACT AGAATGGGTA ATTTCTCTTC ACTTCTGAAG CTCCTTTCAA 20895 |||||||||| |||||||||| ||||||| ATTCGCTGTG CTGGTAGACT AGAATGG... .......... .......... .......... 147 TTATAATTTT ACAAGTGCAT TATAAAAGTG GTGAATTTTT TTATTTGTAA TTACAGGATC 20835 |||| .......... .......... .......... .......... .......... ......GATC 151 CAGATGGTTT ATTGGGTCCG CCTCAAACGG GTCATATAGC CCGACTCGAG TTCCAGAGAC 20775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATGGTTT ATTGGGTCCG CCTCAAACGG GTCATATAGC CCGACTCGAG TTCCAGAGAC 211 GCCTTGAGAA CGATGCTGCG GCCAGAGAAG AATTTGAACG GCAAGTTCGT GAAGAGAAAG 20715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTGAGAA CGATGCTGCG GCCAGAGAAG AATTTGAACG GCAAGTTCGT GAAGAGAAAG 271 AACGTCGCAG AGTTCTTCGT GAG 20692 |||||||||| |||||||||| ||| AACGTCGCAG AGTTCTTCGT GAG 294 hqPGS_C08HBa0060C12.1-_SGN-E204741+ (21074 20928,20838 20692) ******************************************************************************** EST sequence 165 +strand 624 n (File: SGN-E542827+) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TTGG Predicted gene structure (within gDNA segment 23249 to 29713): Exon 1 24011 24379 ( 369 n); cDNA 1 368 ( 368 n); score: 0.889 Intron 1 24380 24457 ( 78 n); Pd: 0.000 (s: 0.89), Pa: 0.000 (s: 0) Exon 2 24458 24484 ( 27 n); cDNA 369 392 ( 24 n); score: 0.741 Intron 2 24485 25362 ( 878 n); Pd: 0.878 (s: 0), Pa: 1.000 (s: 0) Exon 3 25363 25374 ( 12 n); cDNA 393 403 ( 11 n); score: 0.667 Intron 3 25375 28873 (3499 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 28874 28889 ( 16 n); cDNA 404 419 ( 16 n); score: 0.812 MATCH C08HBa0060C12.1+ SGN-E542827+ 0.889 424 0.679 C PGS_C08HBa0060C12.1+_SGN-E542827+ (24011 24379,24458 24484,25363 25374,28874 28889) Alignment (genomic DNA sequence = upper lines): TTGACTTTTT TTTATTTCAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 24070 || |||||| ||| | || |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 60 TATGTTTCAC TAATATTATT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTCGAATA 24130 ||| |||||| ||||||| || |||||||||| |||||||||| |||||||||| |||| ||||| TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 120 CGAAATTAAA TTACTATACA CACAAAAAAA ATAGTTTAAT TTTTTAT-TC TTTAAACTAA 24189 | |||||||| |||| ||||| |||||||||| |||||||| | ||||| | || |||||||||| CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 180 GGAATGAAAG AAAACAACAA AATAAGAATA AGAAATTCAA ATAATTATAA TAAAAGAAGT 24249 |||||||||| || || || ||| |||||| | ||| |||| |||||||||| |||||||||| GGAATGAAAG --AA-AA-AA AATTAGAATA ACAAACTCAA ATAATTATAA TAAAAGAAGT 236 CAAAAAATAA TTTATGTATG AAAAAAATTA AA-ATATACC TTGAACTTTG ATAGAAGAAT 24308 |||| ||||| ||||||||| |||||||||| || ||| ||| | |||||||| |||||||||| CAAACAATAA TTTATGTATA AAAAAAATTA AATATA-ACC TCGAACTTTG ATAGAAGAAT 295 CATATATATC CCTAAATAA- TTTTTTAAAA A-AATTAGAA GTAATAAATA TAAATTTAAA 24366 ||||||| | ||||||| |||||||||| | ||| | || |||||||||| |||||||||| AATATATACC TTTAAATAAT TTTTTTAAAA ACAATCAAAA GTAATAAATA TAAATTTAAA 355 ACTAATTTTT TAACTTCCGT GTTAAATGAA TGGTATATGT GAGCCATTTT GTAACGGCAG 24426 | |||||||| ||| ATTAATTTTT TAA....... .......... .......... .......... .......... 368 AATATATGTG AGCTGTTTGT ATAACGATAA GGATATATGA ACCACTTTTA TAACGAAGGT 24486 |||||| | ||| |||| ||||| | .......... .......... .......... .TATATATTA GCCA-TTTTG TAACG-A-.. 392 TATATCAGCT CCAAACTCTT TTCCCTAAAA AGTATTTTAC TTTAATAATT TATTCTAATT 24546 .......... .......... .......... .......... .......... .......... 392 TTTTTGAATT AAATAAAAAA AGTAACTATA ATTTTTAATA CCTACATCAA TTAAACGAAA 24606 .......... .......... .......... .......... .......... .......... 392 CAGACGATAG ACCGTGCATG TGCATTTCTA TGAATGTAAG CATTTAATTC ACACAAGAAA 24666 .......... .......... .......... .......... .......... .......... 392 ACTCCTCACT AATTAAAGGA AAAAAAGTAG TGAACACTTT TTCCGTGCAT AGTTAAAAAT 24726 .......... .......... .......... .......... .......... .......... 392 TATACAGAGA AAAATGCTCT CCTCCAAGCT CTCCTGGTTG ATCACGGCCG CGATCACGGC 24786 .......... .......... .......... .......... .......... .......... 392 GGCGCTACTG TCGCCAACCA CCATAGAGGC ACAAACGCCG TCGTGTGCTT CTCAACTTGT 24846 .......... .......... .......... .......... .......... .......... 392 CCCCTGTGCA GCTTTCCTCA ACTCAACCAA ACCACCGGCT TCTTGCTGTG ACCCACTAAG 24906 .......... .......... .......... .......... .......... .......... 392 AGAAGCCGTG ACCAAAGATC TTCAATGTCT CTGCAAACTT TACGAAAATC CCGCTTTGTT 24966 .......... .......... .......... .......... .......... .......... 392 GATTTCTCTC GGTATTAACG TTACTCAAGC TATTGAACTT CCTAAGTACT GTAACATCCC 25026 .......... .......... .......... .......... .......... .......... 392 TGGCGATGTT TCCGCTTGTA AAGGTAGGAT TTATTTATTT TTTAGTTCAA ACCCCAGGTG 25086 .......... .......... .......... .......... .......... .......... 392 ACTTGAATTG GGGCTGAATT GGAGTTGATA CCGCTGTTTT ACTTGGAATG AAGCAAAATT 25146 .......... .......... .......... .......... .......... .......... 392 TCTACTTCAA ATCTGAAATT TTCCATTTTT GGTTTTCTGT TCATCTTATT TACTTTGTTG 25206 .......... .......... .......... .......... .......... .......... 392 GGTATTTAGA AAAAAAAACA AATCTGGGAA TGGTAGGGAA TTTTGTTTGA TAAATAATTG 25266 .......... .......... .......... .......... .......... .......... 392 GGGCTTTAAA TATTTCTTCT GTAATTTGTT ACTGTCGTTA TTGATTTAGC ATTAGTTATG 25326 .......... .......... .......... .......... .......... .......... 392 CTGTTTATTT ATTTATTTGT TGTTTTTTCT CTGCAGCGGC TGCTCCTAGT TCAAGTTCTC 25386 | | |||| | | .......... .......... .......... ......CAG- TGCTGCAA.. .......... 403 CTTCTGGGAA AACGCCACCA GGTAACTGAG ATTAAATTGC TTTTTGTTTC AACTTTGTTA 25446 .......... .......... .......... .......... .......... .......... 403 ACACTGAGTT AAAAGTAGTC AATTGATGAA CAATTTCGGA GTATGCATCA ATTTGATTTA 25506 .......... .......... .......... .......... .......... .......... 403 ATCTTTTTTG TTAATTATTG ATCCTTGCTC CTTTAAGTTT TACTGCATCG TGATCCATAG 25566 .......... .......... .......... .......... .......... .......... 403 GTGTTTCTAG TTCCATTTAT TTTTGCTTGG CCTTATTGAA CTTTGCACAT ATGGTAGTGT 25626 .......... .......... .......... .......... .......... .......... 403 TTGTATTGCT AATTGTACTT ATTAATTATT CTTTGAAAAA AAAGTTTGAC TACTGGTGCT 25686 .......... .......... .......... .......... .......... .......... 403 TTATATAGTC ACTTAAAAGA TAATTTTGTA AGAAAAGAAT GTTCAGTAGT TATTTTCACA 25746 .......... .......... .......... .......... .......... .......... 403 GATATTTTGA TTGAATGGTT TGAAAAGAAA AAATAATAGC ATTTCCACAC GAAAGCTTTC 25806 .......... .......... .......... .......... .......... .......... 403 TACTATTTCA GTCAGAATCT GTTTCCAACC ATTCGTTTTA CCAGTAAGCT GGTTCGGTGG 25866 .......... .......... .......... .......... .......... .......... 403 GAAATGGTGG AAAAATTATG TTTTAAAACG CAAATTTCCC AATGATTCGT TGTGGAAAAC 25926 .......... .......... .......... .......... .......... .......... 403 ATCTGCTTCT AGTAGTGGAC GAAGCCAAGG TTTCAACTTT ATAGGTTTAG AGCTATGATT 25986 .......... .......... .......... .......... .......... .......... 403 TCAACTTTAT AAATCGAGTT TATTCCTGCT TTGAAGAATG CGTATTCGGG CTTCAAGCTT 26046 .......... .......... .......... .......... .......... .......... 403 GTGGAACTAT ACTGGGTATA TTGTTGTTGA TGTAATGATG TTGTATCCAG ATTTCTAGTT 26106 .......... .......... .......... .......... .......... .......... 403 CCACACCTGC TTTTATGGCG TTATGGGATA GCCTTTGTTA AATTTAAATG ATAGCACAAA 26166 .......... .......... .......... .......... .......... .......... 403 AATCCAAAGG TTGACTTGAT ATCGCTGTCC TTGTTCAATG ATTCAGAAAT TTGATAACAT 26226 .......... .......... .......... .......... .......... .......... 403 AGCTATATTA CTTGACGTTT TCAAACTACT AAATAAGTTT TCACCAAGTA ACTTGTCATA 26286 .......... .......... .......... .......... .......... .......... 403 TACGATCTTT GAAATGAGAC GAGACATAAT ATTTTGTTGC TTTTTCAAAA CAAGAACGTG 26346 .......... .......... .......... .......... .......... .......... 403 AGTAGATTGT GATATACTAT AAATTTGTGG TCCAACAAGA ATAGTTATGT TGGACTTATG 26406 .......... .......... .......... .......... .......... .......... 403 GATGCACTCG ACATGTTTTG TTCATTCTGT GTTATGATAA AATTTCCTTA GATGTCAAAT 26466 .......... .......... .......... .......... .......... .......... 403 TAATTTGGTG TCAGACAGAT AAACCTTTTT AGTGATGTCT CTCTTTGTTT GCACCTTCGA 26526 .......... .......... .......... .......... .......... .......... 403 CGATTATTGG GAAAACACAA AATAAAAATA TTGAATTACA TCGGGTGAGA AATCAAATTC 26586 .......... .......... .......... .......... .......... .......... 403 ATGCAAATAA GTTTTTTGTT TCCTTCTCTT TCAAATTTCC TGTCCTTCCT GTTTTAATCA 26646 .......... .......... .......... .......... .......... .......... 403 AGTTTCTCTA TGGTTGCAAA CTACTTTACA TTTTCCCCCC TACACGATCA TTAATTGTTT 26706 .......... .......... .......... .......... .......... .......... 403 CTAGTGAAAA CTTAAGTTGA AGTGTTCACC CTGATTCTTA TTTCTTAATG GTGTTCAATC 26766 .......... .......... .......... .......... .......... .......... 403 AATTTTATGG TGTTCAATCA ATCTTAGATC TTCAGCCAAA AAAATTGACC TACTTCGTAA 26826 .......... .......... .......... .......... .......... .......... 403 AGCTTAATTT GAGGAATCAA GCTGTTTCTT AATAGAAAAG TTGAAAAAGT CGTTCATGGT 26886 .......... .......... .......... .......... .......... .......... 403 GGAAATGAAA ATGTTCCGAC TTCATGTAAT TATTAAGAGA GACATTCTTC TCAATGTTAA 26946 .......... .......... .......... .......... .......... .......... 403 GAATCTTGTT CTTTCTTAAC CAATTAGCCA TTGGAAATAT GCAGAGCAAT TTCTCTTGGA 27006 .......... .......... .......... .......... .......... .......... 403 TGTTGCTTTT TGTCTTTCTA CATAGCTATG TAATAAGTTT TTAAAGTCTA CTTTTATGGC 27066 .......... .......... .......... .......... .......... .......... 403 CTTACCCTGA TCGTTTTGTC TTTCTATAGT AAGTTCACTT TTCTTCTGTT TTCCACCTCT 27126 .......... .......... .......... .......... .......... .......... 403 TGAGTCATGC CGATTGAAGG TTTTTCCAAC GCTGGCAAAG AAAAGAAGAA CAGAGATAGA 27186 .......... .......... .......... .......... .......... .......... 403 AGGTGGCAAT ATTTATTACA ACTTCCGCCG AGTAATATTT TACCTCGTTT AATGTTATGT 27246 .......... .......... .......... .......... .......... .......... 403 GCCCCAGGTG CTTTGAGATT TTGTGGCAGT TCGGAGTGGA ATGTGGCATA TTTGTTATGC 27306 .......... .......... .......... .......... .......... .......... 403 TACTCGACTA ACGATCATAA CTTTAGTAAT TATGTGTGGG AGTATCTTGT TTAGGCATTT 27366 .......... .......... .......... .......... .......... .......... 403 TAGTCATTAA CCTGGACATG TGGGATTAGC CAAATGGAGA ACGGAAACAT CTGTCTAAAT 27426 .......... .......... .......... .......... .......... .......... 403 CATATGATTC GTGTTTAACT TGCATTGCAT TCTTGCTAAC TGTATTTTTC TCTTGATGAA 27486 .......... .......... .......... .......... .......... .......... 403 ACTTTACAGT CACCACCCCA GCTTCAAAAG ATAAAAACGG AGTGAGCACG GTTGCATGGA 27546 .......... .......... .......... .......... .......... .......... 403 CTGGAATGTC AAGCTTACTC ATGCTCTTTG CTTCGTTCGT GCTTGCTTAG TTCACAGAGT 27606 .......... .......... .......... .......... .......... .......... 403 GTGTCCTTCA AGTACTGGGT AAATGTTGGT GAATTTCTTT GTTTCAGTAT TTATTTAGGG 27666 .......... .......... .......... .......... .......... .......... 403 AATTGAAAGA TTGTACTCCA GACTTGATCG CTTTTATTAT GTGAAGTTTC CAATTGAGAT 27726 .......... .......... .......... .......... .......... .......... 403 GAACTAAATG AAGCTAAATT GATGTATGAA TCGTATTGCA TAAGTTGTGT TTGCATGTTC 27786 .......... .......... .......... .......... .......... .......... 403 TTGGTGTATT CATGGGATAT TGTTTCCCCC TCCCTAATAG CTCCCTTCTT TTTTCTATCG 27846 .......... .......... .......... .......... .......... .......... 403 TGAACTGTGC TTAGACGCTT CGTAAAACCG CAGCGATCTA CGAGAGGAGC TGATAGATGA 27906 .......... .......... .......... .......... .......... .......... 403 GTAGACTTCC CCTTTTGATT CACGGAATGT GATCTGGGAC ACGATGGGAG TTTGCGTGTC 27966 .......... .......... .......... .......... .......... .......... 403 TCGGTAGGAA AGATATCACC GGAGTATATA GCACAAGATC GTCTTTTCTT GCTGCCATGG 28026 .......... .......... .......... .......... .......... .......... 403 GGTCGAGATG TGAACAAGGT AAATCCAATG GGAACCAAAA AACGAGGGGT ACTGCATTGG 28086 .......... .......... .......... .......... .......... .......... 403 GCAGAAGACG ATCCTTGGTG ACTCGAACTC ACAACTTTCA AGTTGAAAGT GCAGGGTGTT 28146 .......... .......... .......... .......... .......... .......... 403 TGTTTTATAA CACTAACTCC CTTTAAATTG ATTTCTTAAA TTTATTATTT AAAAATAATT 28206 .......... .......... .......... .......... .......... .......... 403 TTAAAGCAAT TCTCTAAGAA GTCTTTCAAA AATTCTTTAC GGGTTATATT TGATATTTTT 28266 .......... .......... .......... .......... .......... .......... 403 TTTTAGATCA CTATAATATT TAAAGTGAAA GGCTAAAATT TAAAATTTAA AATGCTCATA 28326 .......... .......... .......... .......... .......... .......... 403 AAAGTATTTT AATTTTTTAA ATTTTATATC TAAATTATTA AATATACAAG TTGCTTACAT 28386 .......... .......... .......... .......... .......... .......... 403 ATTAATTACT AATTATTTAT TAATACATAC TCTCTACATA CATGACAATG GTATTTTAAA 28446 .......... .......... .......... .......... .......... .......... 403 ATAGAAAAAA GAAATAATTT GTTAATAGTT CAAATAAAAG CGCACACACA TTTGATAATT 28506 .......... .......... .......... .......... .......... .......... 403 TGTTTACCAT TTTTCTATGA AATTTTTAAA ATGGAATACT TAAGCAATAT ATTTGATCGT 28566 .......... .......... .......... .......... .......... .......... 403 AATTATAATC GACTTATAAA TGAAAATATA ATAAAGCAAA TAAAACGGAA CAAAGAGTTT 28626 .......... .......... .......... .......... .......... .......... 403 ATCCAGTAAT AGAAGCTACT AGAAGAACCT AGTCAGCTCC AGTCCCCTTC CATTTTCCTC 28686 .......... .......... .......... .......... .......... .......... 403 GCCTCACTAC CAAAAGCTAG GGTTTACAGT TTCTACAATT TCAAAATTTT TTGAATCTGT 28746 .......... .......... .......... .......... .......... .......... 403 AGTAATCGTA TTTGAAGGTA ATCGGAAAAA GCTATGGACC CGATGAAGTT GAATCAACTG 28806 .......... .......... .......... .......... .......... .......... 403 AAGCAATTCG TTGAACAGTG CAAATCCAAT CCTTCCATTC TCTCCGATCC TTCTCTTTCA 28866 .......... .......... .......... .......... .......... .......... 403 TTTTTCCGTG ACTACATTGA GAA 28889 || || | ||||| ||| .......ATG ACAAAATTGA GAA 419 hqPGS_C08HBa0060C12.1+_SGN-E542827+ (24011 24379,24458 24484) ******************************************************************************** EST sequence 362 -strand 460 n (File: SGN-E243215-) 1 GTATGAAATT TTAAAAAATA GGGAAAAGGG TCTGATATAC CTCTCAACTT TGTCATTTAG 61 AGCTGATATA TCCCTCGTAA TAAAAGTGGT TCATATATGC CCTTATCGTT ATACAAACGG 121 CTCACATATA CCCCTGCCGT TAGAAAATGG CTCACATATA CCCTTCATTT AACGAAAGTT 181 AAAAAATTAG TTTTAAATTT ATATTTGTTA CTTCTAATTT TTTTTTAAAA AAAATATTTA 241 GGGATATATA TGATTCTTCT ATCAAAGTTC AAGGTATATT TTAATTTTTT CATACAAAAA 301 TTATTTTTTG ACTTCTTTTA TTATAATAAT TTGAGTTTCT TATTCTTATT TTGTTTTTTT 361 CTTTCATTCC TTAGTTTAAA TAAAAAAAAT TCAAATATTT TTTTTGTGTG TATTGTAATT 421 TAATTTCGTA TTCGAAGAAA AAATTGGTCA TCTACAATAA Predicted gene structure (within gDNA segment 23056 to 28925): Exon 1 23765 23891 ( 127 n); cDNA 2 127 ( 126 n); score: 0.854 Intron 1 23892 24498 ( 607 n); Pd: 0.900 (s: 0.77), Pa: 0.000 (s: 0) Exon 2 24499 24517 ( 19 n); cDNA 128 147 ( 20 n); score: 0.500 Intron 2 24518 25362 ( 845 n); Pd: 0.884 (s: 0), Pa: 1.000 (s: 0) Exon 3 25363 25374 ( 12 n); cDNA 148 158 ( 11 n); score: 0.667 Intron 3 25375 25850 ( 476 n); Pd: 0.000 (s: 0), Pa: 0.742 (s: 0.60) Exon 4 25851 25895 ( 45 n); cDNA 159 199 ( 41 n); score: 0.600 Intron 4 25896 28169 (2274 n); Pd: 0.727 (s: 0.60), Pa: 0.000 (s: 0.66) Exon 5 28170 28287 ( 118 n); cDNA 200 309 ( 110 n); score: 0.636 MATCH C08HBa0060C12.1+ SGN-E243215- 0.749 321 0.698 C PGS_C08HBa0060C12.1+_SGN-E243215- (23765 23891,24499 24517,25363 25374,25851 25895,28170 28287) Alignment (genomic DNA sequence = upper lines): TATGCAAGAT ATAAAAAATA GGGAAAAGGG TCTGATATAC CTCTTAACTT TGTCATTTAG 23824 |||| || | ||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TATGAAATTT -TAAAAAATA GGGAAAAGGG TCTGATATAC CTCTCAACTT TGTCATTTAG 60 AGCTGATATA TTCCTTGTTA ATAAAGTGGC TCATATATAC CCCTA-CGTG TAAACAAATG 23883 |||||||||| | ||| || | ||||||| |||||||| | || || ||| || ||||| | AGCTGATATA TCCCTCGTAA TAAAAGTGGT TCATATATGC CCTTATCGT- TATACAAACG 119 GCTCACATAT ACCCTTTTTC TCTAACGGAA ATGAAAAAAA ATAATTTTAA TCTAAATTTT 23943 |||||||| GCTCACAT.. .......... .......... .......... .......... .......... 127 TATTATTTTT TTTTCTAAAA AATATAATCT CATATGAGTA AATTTAATCC TCGTCAAACA 24003 .......... .......... .......... .......... .......... .......... 127 TATTTTTTTG ACTTTTTTTT ATTTCAATGA CTAATTTATA ATTATTATTT TGATAATCAA 24063 .......... .......... .......... .......... .......... .......... 127 ATTTATTTAT GTTTCACTAA TATTATTGTA AAACTTATTG TAGATGACCA AAATTTTTCT 24123 .......... .......... .......... .......... .......... .......... 127 TCGAATACGA AATTAAATTA CTATACACAC AAAAAAAATA GTTTAATTTT TTATTCTTTA 24183 .......... .......... .......... .......... .......... .......... 127 AACTAAGGAA TGAAAGAAAA CAACAAAATA AGAATAAGAA ATTCAAATAA TTATAATAAA 24243 .......... .......... .......... .......... .......... .......... 127 AGAAGTCAAA AAATAATTTA TGTATGAAAA AAATTAAAAT ATACCTTGAA CTTTGATAGA 24303 .......... .......... .......... .......... .......... .......... 127 AGAATCATAT ATATCCCTAA ATAATTTTTT AAAAAAATTA GAAGTAATAA ATATAAATTT 24363 .......... .......... .......... .......... .......... .......... 127 AAAACTAATT TTTTAACTTC CGTGTTAAAT GAATGGTATA TGTGAGCCAT TTTGTAACGG 24423 .......... .......... .......... .......... .......... .......... 127 CAGAATATAT GTGAGCTGTT TGTATAACGA TAAGGATATA TGAACCACTT TTATAACGAA 24483 .......... .......... .......... .......... .......... .......... 127 GGTTATATCA GCTCCAAACT CTTTTCCCTA -AAAAGTATT TTACTTTAAT AATTTATTCT 24542 | || | | | || |||| .......... .....ATACC CCTGCCGTTA GAAAA..... .......... .......... 147 AATTTTTTTG AATTAAATAA AAAAAGTAAC TATAATTTTT AATACCTACA TCAATTAAAC 24602 .......... .......... .......... .......... .......... .......... 147 GAAACAGACG ATAGACCGTG CATGTGCATT TCTATGAATG TAAGCATTTA ATTCACACAA 24662 .......... .......... .......... .......... .......... .......... 147 GAAAACTCCT CACTAATTAA AGGAAAAAAA GTAGTGAACA CTTTTTCCGT GCATAGTTAA 24722 .......... .......... .......... .......... .......... .......... 147 AAATTATACA GAGAAAAATG CTCTCCTCCA AGCTCTCCTG GTTGATCACG GCCGCGATCA 24782 .......... .......... .......... .......... .......... .......... 147 CGGCGGCGCT ACTGTCGCCA ACCACCATAG AGGCACAAAC GCCGTCGTGT GCTTCTCAAC 24842 .......... .......... .......... .......... .......... .......... 147 TTGTCCCCTG TGCAGCTTTC CTCAACTCAA CCAAACCACC GGCTTCTTGC TGTGACCCAC 24902 .......... .......... .......... .......... .......... .......... 147 TAAGAGAAGC CGTGACCAAA GATCTTCAAT GTCTCTGCAA ACTTTACGAA AATCCCGCTT 24962 .......... .......... .......... .......... .......... .......... 147 TGTTGATTTC TCTCGGTATT AACGTTACTC AAGCTATTGA ACTTCCTAAG TACTGTAACA 25022 .......... .......... .......... .......... .......... .......... 147 TCCCTGGCGA TGTTTCCGCT TGTAAAGGTA GGATTTATTT ATTTTTTAGT TCAAACCCCA 25082 .......... .......... .......... .......... .......... .......... 147 GGTGACTTGA ATTGGGGCTG AATTGGAGTT GATACCGCTG TTTTACTTGG AATGAAGCAA 25142 .......... .......... .......... .......... .......... .......... 147 AATTTCTACT TCAAATCTGA AATTTTCCAT TTTTGGTTTT CTGTTCATCT TATTTACTTT 25202 .......... .......... .......... .......... .......... .......... 147 GTTGGGTATT TAGAAAAAAA AACAAATCTG GGAATGGTAG GGAATTTTGT TTGATAAATA 25262 .......... .......... .......... .......... .......... .......... 147 ATTGGGGCTT TAAATATTTC TTCTGTAATT TGTTACTGTC GTTATTGATT TAGCATTAGT 25322 .......... .......... .......... .......... .......... .......... 147 TATGCTGTTT ATTTATTTAT TTGTTGTTTT TTCTCTGCAG CGGCTGCTCC TAGTTCAAGT 25382 |||| | | || .......... .......... .......... .......... TGGCT-CACA TA........ 158 TCTCCTTCTG GGAAAACGCC ACCAGGTAAC TGAGATTAAA TTGCTTTTTG TTTCAACTTT 25442 .......... .......... .......... .......... .......... .......... 158 GTTAACACTG AGTTAAAAGT AGTCAATTGA TGAACAATTT CGGAGTATGC ATCAATTTGA 25502 .......... .......... .......... .......... .......... .......... 158 TTTAATCTTT TTTGTTAATT ATTGATCCTT GCTCCTTTAA GTTTTACTGC ATCGTGATCC 25562 .......... .......... .......... .......... .......... .......... 158 ATAGGTGTTT CTAGTTCCAT TTATTTTTGC TTGGCCTTAT TGAACTTTGC ACATATGGTA 25622 .......... .......... .......... .......... .......... .......... 158 GTGTTTGTAT TGCTAATTGT ACTTATTAAT TATTCTTTGA AAAAAAAGTT TGACTACTGG 25682 .......... .......... .......... .......... .......... .......... 158 TGCTTTATAT AGTCACTTAA AAGATAATTT TGTAAGAAAA GAATGTTCAG TAGTTATTTT 25742 .......... .......... .......... .......... .......... .......... 158 CACAGATATT TTGATTGAAT GGTTTGAAAA GAAAAAATAA TAGCATTTCC ACACGAAAGC 25802 .......... .......... .......... .......... .......... .......... 158 TTTCTACTAT TTCAGTCAGA ATCTGTTTCC AACCATTCGT TTTACCAGTA AGCTGGTTCG 25862 || || | .......... .......... .......... .......... ........TA CCCTTCATTT 170 GTGGGAAATG GTGGAAAAAT TATGTTTTAA AACGCAAATT TCCCAATGAT TCGTTGTGGA 25922 |||| || |||||| || ||||||| | AA-CGAAA-- GTTAAAAAAT TA-GTTTTAA ATT....... .......... .......... 199 AAACATCTGC TTCTAGTAGT GGACGAAGCC AAGGTTTCAA CTTTATAGGT TTAGAGCTAT 25982 .......... .......... .......... .......... .......... .......... 199 GATTTCAACT TTATAAATCG AGTTTATTCC TGCTTTGAAG AATGCGTATT CGGGCTTCAA 26042 .......... .......... .......... .......... .......... .......... 199 GCTTGTGGAA CTATACTGGG TATATTGTTG TTGATGTAAT GATGTTGTAT CCAGATTTCT 26102 .......... .......... .......... .......... .......... .......... 199 AGTTCCACAC CTGCTTTTAT GGCGTTATGG GATAGCCTTT GTTAAATTTA AATGATAGCA 26162 .......... .......... .......... .......... .......... .......... 199 CAAAAATCCA AAGGTTGACT TGATATCGCT GTCCTTGTTC AATGATTCAG AAATTTGATA 26222 .......... .......... .......... .......... .......... .......... 199 ACATAGCTAT ATTACTTGAC GTTTTCAAAC TACTAAATAA GTTTTCACCA AGTAACTTGT 26282 .......... .......... .......... .......... .......... .......... 199 CATATACGAT CTTTGAAATG AGACGAGACA TAATATTTTG TTGCTTTTTC AAAACAAGAA 26342 .......... .......... .......... .......... .......... .......... 199 CGTGAGTAGA TTGTGATATA CTATAAATTT GTGGTCCAAC AAGAATAGTT ATGTTGGACT 26402 .......... .......... .......... .......... .......... .......... 199 TATGGATGCA CTCGACATGT TTTGTTCATT CTGTGTTATG ATAAAATTTC CTTAGATGTC 26462 .......... .......... .......... .......... .......... .......... 199 AAATTAATTT GGTGTCAGAC AGATAAACCT TTTTAGTGAT GTCTCTCTTT GTTTGCACCT 26522 .......... .......... .......... .......... .......... .......... 199 TCGACGATTA TTGGGAAAAC ACAAAATAAA AATATTGAAT TACATCGGGT GAGAAATCAA 26582 .......... .......... .......... .......... .......... .......... 199 ATTCATGCAA ATAAGTTTTT TGTTTCCTTC TCTTTCAAAT TTCCTGTCCT TCCTGTTTTA 26642 .......... .......... .......... .......... .......... .......... 199 ATCAAGTTTC TCTATGGTTG CAAACTACTT TACATTTTCC CCCCTACACG ATCATTAATT 26702 .......... .......... .......... .......... .......... .......... 199 GTTTCTAGTG AAAACTTAAG TTGAAGTGTT CACCCTGATT CTTATTTCTT AATGGTGTTC 26762 .......... .......... .......... .......... .......... .......... 199 AATCAATTTT ATGGTGTTCA ATCAATCTTA GATCTTCAGC CAAAAAAATT GACCTACTTC 26822 .......... .......... .......... .......... .......... .......... 199 GTAAAGCTTA ATTTGAGGAA TCAAGCTGTT TCTTAATAGA AAAGTTGAAA AAGTCGTTCA 26882 .......... .......... .......... .......... .......... .......... 199 TGGTGGAAAT GAAAATGTTC CGACTTCATG TAATTATTAA GAGAGACATT CTTCTCAATG 26942 .......... .......... .......... .......... .......... .......... 199 TTAAGAATCT TGTTCTTTCT TAACCAATTA GCCATTGGAA ATATGCAGAG CAATTTCTCT 27002 .......... .......... .......... .......... .......... .......... 199 TGGATGTTGC TTTTTGTCTT TCTACATAGC TATGTAATAA GTTTTTAAAG TCTACTTTTA 27062 .......... .......... .......... .......... .......... .......... 199 TGGCCTTACC CTGATCGTTT TGTCTTTCTA TAGTAAGTTC ACTTTTCTTC TGTTTTCCAC 27122 .......... .......... .......... .......... .......... .......... 199 CTCTTGAGTC ATGCCGATTG AAGGTTTTTC CAACGCTGGC AAAGAAAAGA AGAACAGAGA 27182 .......... .......... .......... .......... .......... .......... 199 TAGAAGGTGG CAATATTTAT TACAACTTCC GCCGAGTAAT ATTTTACCTC GTTTAATGTT 27242 .......... .......... .......... .......... .......... .......... 199 ATGTGCCCCA GGTGCTTTGA GATTTTGTGG CAGTTCGGAG TGGAATGTGG CATATTTGTT 27302 .......... .......... .......... .......... .......... .......... 199 ATGCTACTCG ACTAACGATC ATAACTTTAG TAATTATGTG TGGGAGTATC TTGTTTAGGC 27362 .......... .......... .......... .......... .......... .......... 199 ATTTTAGTCA TTAACCTGGA CATGTGGGAT TAGCCAAATG GAGAACGGAA ACATCTGTCT 27422 .......... .......... .......... .......... .......... .......... 199 AAATCATATG ATTCGTGTTT AACTTGCATT GCATTCTTGC TAACTGTATT TTTCTCTTGA 27482 .......... .......... .......... .......... .......... .......... 199 TGAAACTTTA CAGTCACCAC CCCAGCTTCA AAAGATAAAA ACGGAGTGAG CACGGTTGCA 27542 .......... .......... .......... .......... .......... .......... 199 TGGACTGGAA TGTCAAGCTT ACTCATGCTC TTTGCTTCGT TCGTGCTTGC TTAGTTCACA 27602 .......... .......... .......... .......... .......... .......... 199 GAGTGTGTCC TTCAAGTACT GGGTAAATGT TGGTGAATTT CTTTGTTTCA GTATTTATTT 27662 .......... .......... .......... .......... .......... .......... 199 AGGGAATTGA AAGATTGTAC TCCAGACTTG ATCGCTTTTA TTATGTGAAG TTTCCAATTG 27722 .......... .......... .......... .......... .......... .......... 199 AGATGAACTA AATGAAGCTA AATTGATGTA TGAATCGTAT TGCATAAGTT GTGTTTGCAT 27782 .......... .......... .......... .......... .......... .......... 199 GTTCTTGGTG TATTCATGGG ATATTGTTTC CCCCTCCCTA ATAGCTCCCT TCTTTTTTCT 27842 .......... .......... .......... .......... .......... .......... 199 ATCGTGAACT GTGCTTAGAC GCTTCGTAAA ACCGCAGCGA TCTACGAGAG GAGCTGATAG 27902 .......... .......... .......... .......... .......... .......... 199 ATGAGTAGAC TTCCCCTTTT GATTCACGGA ATGTGATCTG GGACACGATG GGAGTTTGCG 27962 .......... .......... .......... .......... .......... .......... 199 TGTCTCGGTA GGAAAGATAT CACCGGAGTA TATAGCACAA GATCGTCTTT TCTTGCTGCC 28022 .......... .......... .......... .......... .......... .......... 199 ATGGGGTCGA GATGTGAACA AGGTAAATCC AATGGGAACC AAAAAACGAG GGGTACTGCA 28082 .......... .......... .......... .......... .......... .......... 199 TTGGGCAGAA GACGATCCTT GGTGACTCGA ACTCACAACT TTCAAGTTGA AAGTGCAGGG 28142 .......... .......... .......... .......... .......... .......... 199 TGTTTGTTTT ATAACACTAA CTCCCTTTAA ATTGATTTCT TAAATTTATT ATTTAAAAAT 28202 || ||| || || | | || || |||||||| .......... .......... .......TAT ATTTGTTACT TCTAATTTTT TTTTAAAAAA 232 AATTTTAAAG CAATTCTCTA AGAAGTCTTT CAAAAATTCT TTACGGGTTA TATTTGATAT 28262 ||| || | | | | | | | ||| | | ||| ||| | | || | ||||| | || AATATTTAGG GATATATATG ATTCTTCTAT C-AAAGTTC- --AAG-GT-A TATTTTA-AT 285 TTTTTTTTAG ATCACTATAA TATTT 28287 ||||| || | | | || | ||| TTTTTCATAC AAAAAT-TAT TTTTT 309 hqPGS_C08HBa0060C12.1+_SGN-E243215- (23765 23891) ******************************************************************************** EST sequence 282 +strand 650 n (File: SGN-E347734+) 1 TACAGAGAAA AATGCTCTCC TCCAAGCTCT CCTGGTTGAT CACGGCCGCG ATCACGGCGG 61 CGCTACTGTC GCCAACCACC ATAGAGGCAC AAACGCCGTC GTGTGCTTCT CAACTTGTCC 121 CCTGTGCAGC TTTCCTCAAC TCAACCAAAC CACCGGCTTC TTGCTGTGAC CCACTAAGAG 181 AAGCCGTGAC CAAAGATCTT CAATGTCTCT GCAAACTTTA CGAAAATCCC GCTTTGTTGA 241 TTTCTCTCGG TATTAACGTT ACTCAAGCTA TTGAACTTCC TAAGTACTGT AACATCCCTG 301 GCGATGTTTC CGCTTGTAAA GCGGCTGCTC CTAGTTCAAG TTCTCCTTCT GGGAAAACGC 361 CACCAGGTAA CTGAGATTAA ATTGCTTTTT GTTTCAACTT TGTTAACACT GAGTTAAAAG 421 TAGTCAATTG ATGAACAATT TCGGAGTATG CATCAATTTG ATTTAATCTT TTTTGTTAAT 481 TATTGATCCT TGCTCCTTTA AGTTTTACTG CATCGTGATC CATAGGTGTT TCTAGTTCCA 541 TTTATTTTTG CTTGGCCTTA TTGAACTTTG CACATATGGT AGTGTTTGTA TTGCTAATTG 601 TACTTATTAA TTATTCTTTG AAAAAAAGTT TGACTACTGG TGCTTTATAT Predicted gene structure (within gDNA segment 24129 to 26302): Exon 1 24729 25049 ( 321 n); cDNA 1 321 ( 321 n); score: 1.000 Intron 1 25050 25362 ( 313 n); Pd: 0.968 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 25363 25692 ( 330 n); cDNA 322 650 ( 329 n); score: 0.997 MATCH C08HBa0060C12.1+ SGN-E347734+ 0.998 651 1.002 C PGS_C08HBa0060C12.1+_SGN-E347734+ (24729 25049,25363 25692) Alignment (genomic DNA sequence = upper lines): TACAGAGAAA AATGCTCTCC TCCAAGCTCT CCTGGTTGAT CACGGCCGCG ATCACGGCGG 24788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGAGAAA AATGCTCTCC TCCAAGCTCT CCTGGTTGAT CACGGCCGCG ATCACGGCGG 60 CGCTACTGTC GCCAACCACC ATAGAGGCAC AAACGCCGTC GTGTGCTTCT CAACTTGTCC 24848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTACTGTC GCCAACCACC ATAGAGGCAC AAACGCCGTC GTGTGCTTCT CAACTTGTCC 120 CCTGTGCAGC TTTCCTCAAC TCAACCAAAC CACCGGCTTC TTGCTGTGAC CCACTAAGAG 24908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTGCAGC TTTCCTCAAC TCAACCAAAC CACCGGCTTC TTGCTGTGAC CCACTAAGAG 180 AAGCCGTGAC CAAAGATCTT CAATGTCTCT GCAAACTTTA CGAAAATCCC GCTTTGTTGA 24968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCGTGAC CAAAGATCTT CAATGTCTCT GCAAACTTTA CGAAAATCCC GCTTTGTTGA 240 TTTCTCTCGG TATTAACGTT ACTCAAGCTA TTGAACTTCC TAAGTACTGT AACATCCCTG 25028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCTCGG TATTAACGTT ACTCAAGCTA TTGAACTTCC TAAGTACTGT AACATCCCTG 300 GCGATGTTTC CGCTTGTAAA GGTAGGATTT ATTTATTTTT TAGTTCAAAC CCCAGGTGAC 25088 |||||||||| |||||||||| | GCGATGTTTC CGCTTGTAAA G......... .......... .......... .......... 321 TTGAATTGGG GCTGAATTGG AGTTGATACC GCTGTTTTAC TTGGAATGAA GCAAAATTTC 25148 .......... .......... .......... .......... .......... .......... 321 TACTTCAAAT CTGAAATTTT CCATTTTTGG TTTTCTGTTC ATCTTATTTA CTTTGTTGGG 25208 .......... .......... .......... .......... .......... .......... 321 TATTTAGAAA AAAAAACAAA TCTGGGAATG GTAGGGAATT TTGTTTGATA AATAATTGGG 25268 .......... .......... .......... .......... .......... .......... 321 GCTTTAAATA TTTCTTCTGT AATTTGTTAC TGTCGTTATT GATTTAGCAT TAGTTATGCT 25328 .......... .......... .......... .......... .......... .......... 321 GTTTATTTAT TTATTTGTTG TTTTTTCTCT GCAGCGGCTG CTCCTAGTTC AAGTTCTCCT 25388 |||||| |||||||||| |||||||||| .......... .......... .......... ....CGGCTG CTCCTAGTTC AAGTTCTCCT 347 TCTGGGAAAA CGCCACCAGG TAACTGAGAT TAAATTGCTT TTTGTTTCAA CTTTGTTAAC 25448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGGAAAA CGCCACCAGG TAACTGAGAT TAAATTGCTT TTTGTTTCAA CTTTGTTAAC 407 ACTGAGTTAA AAGTAGTCAA TTGATGAACA ATTTCGGAGT ATGCATCAAT TTGATTTAAT 25508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAGTTAA AAGTAGTCAA TTGATGAACA ATTTCGGAGT ATGCATCAAT TTGATTTAAT 467 CTTTTTTGTT AATTATTGAT CCTTGCTCCT TTAAGTTTTA CTGCATCGTG ATCCATAGGT 25568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTGTT AATTATTGAT CCTTGCTCCT TTAAGTTTTA CTGCATCGTG ATCCATAGGT 527 GTTTCTAGTT CCATTTATTT TTGCTTGGCC TTATTGAACT TTGCACATAT GGTAGTGTTT 25628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCTAGTT CCATTTATTT TTGCTTGGCC TTATTGAACT TTGCACATAT GGTAGTGTTT 587 GTATTGCTAA TTGTACTTAT TAATTATTCT TTGAAAAAAA AGTTTGACTA CTGGTGCTTT 25688 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GTATTGCTAA TTGTACTTAT TAATTATTCT TTG-AAAAAA AGTTTGACTA CTGGTGCTTT 646 ATAT 25692 |||| ATAT 650 hqPGS_C08HBa0060C12.1+_SGN-E347734+ (24729 25049,25363 25692) ******************************************************************************** EST sequence 383 -strand 641 n (File: SGN-E376015-) 1 GAGAAAAATG CTCTCCTCCA AGCTCTCCTG GTTGATCACG GCCGCGATCA CGGCGGCGCT 61 ACTGTCGCCA ACCACCATAG AGGCACAAAC GCCGTCGTGT GCTTCTCAAC TTGTCCCCTG 121 TGCAGCTTTC CTCAACTCAA CCAAACCACC GGCTTCTTGC TGTGACCCAC TAAGAGAAGC 181 CGTGACCAAA GATCTTCAAT GTCTCTGCAA ACTTTACGAA AATCCCGCTT TGTTGATTTC 241 TCTCGGTATT AACGTTACTC AAGCTATTGA ACTTCCTAAG TACTGTAACA TCCCTGGCGA 301 TGTTTCCGCT TGTAAAGCGG CTGCTCCTAG TTCAAGTTCT CCTTCTGGGA AAACGCCACC 361 AGTCACCACC CCAGCTTCAA AAGATAAAAA CGGAGTGAGC ACGGTTGCAT GGACTGGAAT 421 GTCAAGCTTA CTCATGCTCT TTGCTTCGTT CGTGCTTGCT TAGTTCACAG AGTGTGTCCT 481 TCAAGTACTG GGTAAATGTT GGTGAATTTC TTTGTTTCAG TATTTATTTA GGGAATTGAA 541 AGATTGTACT CCAGACTTGA TCGCTTTTAT TATGTGAAGT TTCCAATTGA GATGAACTAA 601 ATGAAGCTAA ATTGATGTAT GAATCGTATT GCAAAAAAAA A Predicted gene structure (within gDNA segment 24123 to 28446): Exon 1 24733 25049 ( 317 n); cDNA 1 317 ( 317 n); score: 1.000 Intron 1 25050 25362 ( 313 n); Pd: 0.968 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 25363 25407 ( 45 n); cDNA 318 362 ( 45 n); score: 1.000 Intron 2 25408 27495 (2088 n); Pd: 0.988 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 27496 27769 ( 274 n); cDNA 363 636 ( 274 n); score: 0.996 MATCH C08HBa0060C12.1+ SGN-E376015- 0.998 636 0.992 C PGS_C08HBa0060C12.1+_SGN-E376015- (24733 25049,25363 25407,27496 27769) Alignment (genomic DNA sequence = upper lines): GAGAAAAATG CTCTCCTCCA AGCTCTCCTG GTTGATCACG GCCGCGATCA CGGCGGCGCT 24792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAAATG CTCTCCTCCA AGCTCTCCTG GTTGATCACG GCCGCGATCA CGGCGGCGCT 60 ACTGTCGCCA ACCACCATAG AGGCACAAAC GCCGTCGTGT GCTTCTCAAC TTGTCCCCTG 24852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTCGCCA ACCACCATAG AGGCACAAAC GCCGTCGTGT GCTTCTCAAC TTGTCCCCTG 120 TGCAGCTTTC CTCAACTCAA CCAAACCACC GGCTTCTTGC TGTGACCCAC TAAGAGAAGC 24912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTTTC CTCAACTCAA CCAAACCACC GGCTTCTTGC TGTGACCCAC TAAGAGAAGC 180 CGTGACCAAA GATCTTCAAT GTCTCTGCAA ACTTTACGAA AATCCCGCTT TGTTGATTTC 24972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGACCAAA GATCTTCAAT GTCTCTGCAA ACTTTACGAA AATCCCGCTT TGTTGATTTC 240 TCTCGGTATT AACGTTACTC AAGCTATTGA ACTTCCTAAG TACTGTAACA TCCCTGGCGA 25032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGGTATT AACGTTACTC AAGCTATTGA ACTTCCTAAG TACTGTAACA TCCCTGGCGA 300 TGTTTCCGCT TGTAAAGGTA GGATTTATTT ATTTTTTAGT TCAAACCCCA GGTGACTTGA 25092 |||||||||| ||||||| TGTTTCCGCT TGTAAAG... .......... .......... .......... .......... 317 ATTGGGGCTG AATTGGAGTT GATACCGCTG TTTTACTTGG AATGAAGCAA AATTTCTACT 25152 .......... .......... .......... .......... .......... .......... 317 TCAAATCTGA AATTTTCCAT TTTTGGTTTT CTGTTCATCT TATTTACTTT GTTGGGTATT 25212 .......... .......... .......... .......... .......... .......... 317 TAGAAAAAAA AACAAATCTG GGAATGGTAG GGAATTTTGT TTGATAAATA ATTGGGGCTT 25272 .......... .......... .......... .......... .......... .......... 317 TAAATATTTC TTCTGTAATT TGTTACTGTC GTTATTGATT TAGCATTAGT TATGCTGTTT 25332 .......... .......... .......... .......... .......... .......... 317 ATTTATTTAT TTGTTGTTTT TTCTCTGCAG CGGCTGCTCC TAGTTCAAGT TCTCCTTCTG 25392 |||||||||| |||||||||| |||||||||| .......... .......... .......... CGGCTGCTCC TAGTTCAAGT TCTCCTTCTG 347 GGAAAACGCC ACCAGGTAAC TGAGATTAAA TTGCTTTTTG TTTCAACTTT GTTAACACTG 25452 |||||||||| ||||| GGAAAACGCC ACCAG..... .......... .......... .......... .......... 362 AGTTAAAAGT AGTCAATTGA TGAACAATTT CGGAGTATGC ATCAATTTGA TTTAATCTTT 25512 .......... .......... .......... .......... .......... .......... 362 TTTGTTAATT ATTGATCCTT GCTCCTTTAA GTTTTACTGC ATCGTGATCC ATAGGTGTTT 25572 .......... .......... .......... .......... .......... .......... 362 CTAGTTCCAT TTATTTTTGC TTGGCCTTAT TGAACTTTGC ACATATGGTA GTGTTTGTAT 25632 .......... .......... .......... .......... .......... .......... 362 TGCTAATTGT ACTTATTAAT TATTCTTTGA AAAAAAAGTT TGACTACTGG TGCTTTATAT 25692 .......... .......... .......... .......... .......... .......... 362 AGTCACTTAA AAGATAATTT TGTAAGAAAA GAATGTTCAG TAGTTATTTT CACAGATATT 25752 .......... .......... .......... .......... .......... .......... 362 TTGATTGAAT GGTTTGAAAA GAAAAAATAA TAGCATTTCC ACACGAAAGC TTTCTACTAT 25812 .......... .......... .......... .......... .......... .......... 362 TTCAGTCAGA ATCTGTTTCC AACCATTCGT TTTACCAGTA AGCTGGTTCG GTGGGAAATG 25872 .......... .......... .......... .......... .......... .......... 362 GTGGAAAAAT TATGTTTTAA AACGCAAATT TCCCAATGAT TCGTTGTGGA AAACATCTGC 25932 .......... .......... .......... .......... .......... .......... 362 TTCTAGTAGT GGACGAAGCC AAGGTTTCAA CTTTATAGGT TTAGAGCTAT GATTTCAACT 25992 .......... .......... .......... .......... .......... .......... 362 TTATAAATCG AGTTTATTCC TGCTTTGAAG AATGCGTATT CGGGCTTCAA GCTTGTGGAA 26052 .......... .......... .......... .......... .......... .......... 362 CTATACTGGG TATATTGTTG TTGATGTAAT GATGTTGTAT CCAGATTTCT AGTTCCACAC 26112 .......... .......... .......... .......... .......... .......... 362 CTGCTTTTAT GGCGTTATGG GATAGCCTTT GTTAAATTTA AATGATAGCA CAAAAATCCA 26172 .......... .......... .......... .......... .......... .......... 362 AAGGTTGACT TGATATCGCT GTCCTTGTTC AATGATTCAG AAATTTGATA ACATAGCTAT 26232 .......... .......... .......... .......... .......... .......... 362 ATTACTTGAC GTTTTCAAAC TACTAAATAA GTTTTCACCA AGTAACTTGT CATATACGAT 26292 .......... .......... .......... .......... .......... .......... 362 CTTTGAAATG AGACGAGACA TAATATTTTG TTGCTTTTTC AAAACAAGAA CGTGAGTAGA 26352 .......... .......... .......... .......... .......... .......... 362 TTGTGATATA CTATAAATTT GTGGTCCAAC AAGAATAGTT ATGTTGGACT TATGGATGCA 26412 .......... .......... .......... .......... .......... .......... 362 CTCGACATGT TTTGTTCATT CTGTGTTATG ATAAAATTTC CTTAGATGTC AAATTAATTT 26472 .......... .......... .......... .......... .......... .......... 362 GGTGTCAGAC AGATAAACCT TTTTAGTGAT GTCTCTCTTT GTTTGCACCT TCGACGATTA 26532 .......... .......... .......... .......... .......... .......... 362 TTGGGAAAAC ACAAAATAAA AATATTGAAT TACATCGGGT GAGAAATCAA ATTCATGCAA 26592 .......... .......... .......... .......... .......... .......... 362 ATAAGTTTTT TGTTTCCTTC TCTTTCAAAT TTCCTGTCCT TCCTGTTTTA ATCAAGTTTC 26652 .......... .......... .......... .......... .......... .......... 362 TCTATGGTTG CAAACTACTT TACATTTTCC CCCCTACACG ATCATTAATT GTTTCTAGTG 26712 .......... .......... .......... .......... .......... .......... 362 AAAACTTAAG TTGAAGTGTT CACCCTGATT CTTATTTCTT AATGGTGTTC AATCAATTTT 26772 .......... .......... .......... .......... .......... .......... 362 ATGGTGTTCA ATCAATCTTA GATCTTCAGC CAAAAAAATT GACCTACTTC GTAAAGCTTA 26832 .......... .......... .......... .......... .......... .......... 362 ATTTGAGGAA TCAAGCTGTT TCTTAATAGA AAAGTTGAAA AAGTCGTTCA TGGTGGAAAT 26892 .......... .......... .......... .......... .......... .......... 362 GAAAATGTTC CGACTTCATG TAATTATTAA GAGAGACATT CTTCTCAATG TTAAGAATCT 26952 .......... .......... .......... .......... .......... .......... 362 TGTTCTTTCT TAACCAATTA GCCATTGGAA ATATGCAGAG CAATTTCTCT TGGATGTTGC 27012 .......... .......... .......... .......... .......... .......... 362 TTTTTGTCTT TCTACATAGC TATGTAATAA GTTTTTAAAG TCTACTTTTA TGGCCTTACC 27072 .......... .......... .......... .......... .......... .......... 362 CTGATCGTTT TGTCTTTCTA TAGTAAGTTC ACTTTTCTTC TGTTTTCCAC CTCTTGAGTC 27132 .......... .......... .......... .......... .......... .......... 362 ATGCCGATTG AAGGTTTTTC CAACGCTGGC AAAGAAAAGA AGAACAGAGA TAGAAGGTGG 27192 .......... .......... .......... .......... .......... .......... 362 CAATATTTAT TACAACTTCC GCCGAGTAAT ATTTTACCTC GTTTAATGTT ATGTGCCCCA 27252 .......... .......... .......... .......... .......... .......... 362 GGTGCTTTGA GATTTTGTGG CAGTTCGGAG TGGAATGTGG CATATTTGTT ATGCTACTCG 27312 .......... .......... .......... .......... .......... .......... 362 ACTAACGATC ATAACTTTAG TAATTATGTG TGGGAGTATC TTGTTTAGGC ATTTTAGTCA 27372 .......... .......... .......... .......... .......... .......... 362 TTAACCTGGA CATGTGGGAT TAGCCAAATG GAGAACGGAA ACATCTGTCT AAATCATATG 27432 .......... .......... .......... .......... .......... .......... 362 ATTCGTGTTT AACTTGCATT GCATTCTTGC TAACTGTATT TTTCTCTTGA TGAAACTTTA 27492 .......... .......... .......... .......... .......... .......... 362 CAGTCACCAC CCCAGCTTCA AAAGATAAAA ACGGAGTGAG CACGGTTGCA TGGACTGGAA 27552 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TCACCAC CCCAGCTTCA AAAGATAAAA ACGGAGTGAG CACGGTTGCA TGGACTGGAA 419 TGTCAAGCTT ACTCATGCTC TTTGCTTCGT TCGTGCTTGC TTAGTTCACA GAGTGTGTCC 27612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAGCTT ACTCATGCTC TTTGCTTCGT TCGTGCTTGC TTAGTTCACA GAGTGTGTCC 479 TTCAAGTACT GGGTAAATGT TGGTGAATTT CTTTGTTTCA GTATTTATTT AGGGAATTGA 27672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGTACT GGGTAAATGT TGGTGAATTT CTTTGTTTCA GTATTTATTT AGGGAATTGA 539 AAGATTGTAC TCCAGACTTG ATCGCTTTTA TTATGTGAAG TTTCCAATTG AGATGAACTA 27732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTGTAC TCCAGACTTG ATCGCTTTTA TTATGTGAAG TTTCCAATTG AGATGAACTA 599 AATGAAGCTA AATTGATGTA TGAATCGTAT TGCATAA 27769 |||||||||| |||||||||| |||||||||| |||| || AATGAAGCTA AATTGATGTA TGAATCGTAT TGCAAAA 636 hqPGS_C08HBa0060C12.1+_SGN-E376015- (24733 25049,25363 25407,27496 27769) ******************************************************************************** EST sequence 191 +strand 641 n (File: SGN-E376016+) 1 AGAAAAATGC TCTCCTCCAA GCTCTCCTGG TTGATCACGG CCGCGATCAC GGCGGCGCTA 61 CTGTCGCCAA CCACCATAGA GGCACAAACG CCGTCGTGTG CTTCTCAACT TGTCCCCTGT 121 GCAGCTTTCC TCAACTCAAC CAAACCACCG GCTTCTTGCT GTGACCCACT AAGAGAAGCC 181 GTGACCAAAG ATCTTCAATG TCTCTGCAAA CTTTACGAAA ATCCCGCTTT GTTGATTTCT 241 CTCGGTATTA ACGTTACTCA AGCTATTGAA CTTCCTAAGT ACTGTAACAT CCCTGGCGAT 301 GTTTCCGCTT GTAAAGCGGC TGCTCCTAGT TCAAGTTCTC CTTCTGGGAA AACGCCACCA 361 GTCACCACCC CAGCTTCAAA AGATAAAAAC GGAGTGAGCA CGGTTGCATG GACTGGAATG 421 TCAAGCTTAC TCATGCTCTT TGCTTCGTTC GTGCTTGCTT AGTTCACAGA GTGTGTCCTT 481 CAAGTACTGG GTAAATGTTG GTGAATTTCT TTGTTTCAGT ATTTATTTAG GGAATTGAAA 541 GATTGTACTC CAGACTTGAT CGCTTTTATT ATGTGAAGTT TCCAATTGAG ATGAACTAAA 601 TGAAGCTAAA TTGATGTATG AATCGTATTG CAAAAAAAAA A Predicted gene structure (within gDNA segment 24134 to 28466): Exon 1 24734 25049 ( 316 n); cDNA 1 316 ( 316 n); score: 1.000 Intron 1 25050 25362 ( 313 n); Pd: 0.968 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 25363 25407 ( 45 n); cDNA 317 361 ( 45 n); score: 1.000 Intron 2 25408 27495 (2088 n); Pd: 0.988 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 27496 27769 ( 274 n); cDNA 362 635 ( 274 n); score: 0.996 MATCH C08HBa0060C12.1+ SGN-E376016+ 0.998 635 0.991 C PGS_C08HBa0060C12.1+_SGN-E376016+ (24734 25049,25363 25407,27496 27769) Alignment (genomic DNA sequence = upper lines): AGAAAAATGC TCTCCTCCAA GCTCTCCTGG TTGATCACGG CCGCGATCAC GGCGGCGCTA 24793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAATGC TCTCCTCCAA GCTCTCCTGG TTGATCACGG CCGCGATCAC GGCGGCGCTA 60 CTGTCGCCAA CCACCATAGA GGCACAAACG CCGTCGTGTG CTTCTCAACT TGTCCCCTGT 24853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCGCCAA CCACCATAGA GGCACAAACG CCGTCGTGTG CTTCTCAACT TGTCCCCTGT 120 GCAGCTTTCC TCAACTCAAC CAAACCACCG GCTTCTTGCT GTGACCCACT AAGAGAAGCC 24913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTTTCC TCAACTCAAC CAAACCACCG GCTTCTTGCT GTGACCCACT AAGAGAAGCC 180 GTGACCAAAG ATCTTCAATG TCTCTGCAAA CTTTACGAAA ATCCCGCTTT GTTGATTTCT 24973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCAAAG ATCTTCAATG TCTCTGCAAA CTTTACGAAA ATCCCGCTTT GTTGATTTCT 240 CTCGGTATTA ACGTTACTCA AGCTATTGAA CTTCCTAAGT ACTGTAACAT CCCTGGCGAT 25033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGTATTA ACGTTACTCA AGCTATTGAA CTTCCTAAGT ACTGTAACAT CCCTGGCGAT 300 GTTTCCGCTT GTAAAGGTAG GATTTATTTA TTTTTTAGTT CAAACCCCAG GTGACTTGAA 25093 |||||||||| |||||| GTTTCCGCTT GTAAAG.... .......... .......... .......... .......... 316 TTGGGGCTGA ATTGGAGTTG ATACCGCTGT TTTACTTGGA ATGAAGCAAA ATTTCTACTT 25153 .......... .......... .......... .......... .......... .......... 316 CAAATCTGAA ATTTTCCATT TTTGGTTTTC TGTTCATCTT ATTTACTTTG TTGGGTATTT 25213 .......... .......... .......... .......... .......... .......... 316 AGAAAAAAAA ACAAATCTGG GAATGGTAGG GAATTTTGTT TGATAAATAA TTGGGGCTTT 25273 .......... .......... .......... .......... .......... .......... 316 AAATATTTCT TCTGTAATTT GTTACTGTCG TTATTGATTT AGCATTAGTT ATGCTGTTTA 25333 .......... .......... .......... .......... .......... .......... 316 TTTATTTATT TGTTGTTTTT TCTCTGCAGC GGCTGCTCCT AGTTCAAGTT CTCCTTCTGG 25393 | |||||||||| |||||||||| |||||||||| .......... .......... .........C GGCTGCTCCT AGTTCAAGTT CTCCTTCTGG 347 GAAAACGCCA CCAGGTAACT GAGATTAAAT TGCTTTTTGT TTCAACTTTG TTAACACTGA 25453 |||||||||| |||| GAAAACGCCA CCAG...... .......... .......... .......... .......... 361 GTTAAAAGTA GTCAATTGAT GAACAATTTC GGAGTATGCA TCAATTTGAT TTAATCTTTT 25513 .......... .......... .......... .......... .......... .......... 361 TTGTTAATTA TTGATCCTTG CTCCTTTAAG TTTTACTGCA TCGTGATCCA TAGGTGTTTC 25573 .......... .......... .......... .......... .......... .......... 361 TAGTTCCATT TATTTTTGCT TGGCCTTATT GAACTTTGCA CATATGGTAG TGTTTGTATT 25633 .......... .......... .......... .......... .......... .......... 361 GCTAATTGTA CTTATTAATT ATTCTTTGAA AAAAAAGTTT GACTACTGGT GCTTTATATA 25693 .......... .......... .......... .......... .......... .......... 361 GTCACTTAAA AGATAATTTT GTAAGAAAAG AATGTTCAGT AGTTATTTTC ACAGATATTT 25753 .......... .......... .......... .......... .......... .......... 361 TGATTGAATG GTTTGAAAAG AAAAAATAAT AGCATTTCCA CACGAAAGCT TTCTACTATT 25813 .......... .......... .......... .......... .......... .......... 361 TCAGTCAGAA TCTGTTTCCA ACCATTCGTT TTACCAGTAA GCTGGTTCGG TGGGAAATGG 25873 .......... .......... .......... .......... .......... .......... 361 TGGAAAAATT ATGTTTTAAA ACGCAAATTT CCCAATGATT CGTTGTGGAA AACATCTGCT 25933 .......... .......... .......... .......... .......... .......... 361 TCTAGTAGTG GACGAAGCCA AGGTTTCAAC TTTATAGGTT TAGAGCTATG ATTTCAACTT 25993 .......... .......... .......... .......... .......... .......... 361 TATAAATCGA GTTTATTCCT GCTTTGAAGA ATGCGTATTC GGGCTTCAAG CTTGTGGAAC 26053 .......... .......... .......... .......... .......... .......... 361 TATACTGGGT ATATTGTTGT TGATGTAATG ATGTTGTATC CAGATTTCTA GTTCCACACC 26113 .......... .......... .......... .......... .......... .......... 361 TGCTTTTATG GCGTTATGGG ATAGCCTTTG TTAAATTTAA ATGATAGCAC AAAAATCCAA 26173 .......... .......... .......... .......... .......... .......... 361 AGGTTGACTT GATATCGCTG TCCTTGTTCA ATGATTCAGA AATTTGATAA CATAGCTATA 26233 .......... .......... .......... .......... .......... .......... 361 TTACTTGACG TTTTCAAACT ACTAAATAAG TTTTCACCAA GTAACTTGTC ATATACGATC 26293 .......... .......... .......... .......... .......... .......... 361 TTTGAAATGA GACGAGACAT AATATTTTGT TGCTTTTTCA AAACAAGAAC GTGAGTAGAT 26353 .......... .......... .......... .......... .......... .......... 361 TGTGATATAC TATAAATTTG TGGTCCAACA AGAATAGTTA TGTTGGACTT ATGGATGCAC 26413 .......... .......... .......... .......... .......... .......... 361 TCGACATGTT TTGTTCATTC TGTGTTATGA TAAAATTTCC TTAGATGTCA AATTAATTTG 26473 .......... .......... .......... .......... .......... .......... 361 GTGTCAGACA GATAAACCTT TTTAGTGATG TCTCTCTTTG TTTGCACCTT CGACGATTAT 26533 .......... .......... .......... .......... .......... .......... 361 TGGGAAAACA CAAAATAAAA ATATTGAATT ACATCGGGTG AGAAATCAAA TTCATGCAAA 26593 .......... .......... .......... .......... .......... .......... 361 TAAGTTTTTT GTTTCCTTCT CTTTCAAATT TCCTGTCCTT CCTGTTTTAA TCAAGTTTCT 26653 .......... .......... .......... .......... .......... .......... 361 CTATGGTTGC AAACTACTTT ACATTTTCCC CCCTACACGA TCATTAATTG TTTCTAGTGA 26713 .......... .......... .......... .......... .......... .......... 361 AAACTTAAGT TGAAGTGTTC ACCCTGATTC TTATTTCTTA ATGGTGTTCA ATCAATTTTA 26773 .......... .......... .......... .......... .......... .......... 361 TGGTGTTCAA TCAATCTTAG ATCTTCAGCC AAAAAAATTG ACCTACTTCG TAAAGCTTAA 26833 .......... .......... .......... .......... .......... .......... 361 TTTGAGGAAT CAAGCTGTTT CTTAATAGAA AAGTTGAAAA AGTCGTTCAT GGTGGAAATG 26893 .......... .......... .......... .......... .......... .......... 361 AAAATGTTCC GACTTCATGT AATTATTAAG AGAGACATTC TTCTCAATGT TAAGAATCTT 26953 .......... .......... .......... .......... .......... .......... 361 GTTCTTTCTT AACCAATTAG CCATTGGAAA TATGCAGAGC AATTTCTCTT GGATGTTGCT 27013 .......... .......... .......... .......... .......... .......... 361 TTTTGTCTTT CTACATAGCT ATGTAATAAG TTTTTAAAGT CTACTTTTAT GGCCTTACCC 27073 .......... .......... .......... .......... .......... .......... 361 TGATCGTTTT GTCTTTCTAT AGTAAGTTCA CTTTTCTTCT GTTTTCCACC TCTTGAGTCA 27133 .......... .......... .......... .......... .......... .......... 361 TGCCGATTGA AGGTTTTTCC AACGCTGGCA AAGAAAAGAA GAACAGAGAT AGAAGGTGGC 27193 .......... .......... .......... .......... .......... .......... 361 AATATTTATT ACAACTTCCG CCGAGTAATA TTTTACCTCG TTTAATGTTA TGTGCCCCAG 27253 .......... .......... .......... .......... .......... .......... 361 GTGCTTTGAG ATTTTGTGGC AGTTCGGAGT GGAATGTGGC ATATTTGTTA TGCTACTCGA 27313 .......... .......... .......... .......... .......... .......... 361 CTAACGATCA TAACTTTAGT AATTATGTGT GGGAGTATCT TGTTTAGGCA TTTTAGTCAT 27373 .......... .......... .......... .......... .......... .......... 361 TAACCTGGAC ATGTGGGATT AGCCAAATGG AGAACGGAAA CATCTGTCTA AATCATATGA 27433 .......... .......... .......... .......... .......... .......... 361 TTCGTGTTTA ACTTGCATTG CATTCTTGCT AACTGTATTT TTCTCTTGAT GAAACTTTAC 27493 .......... .......... .......... .......... .......... .......... 361 AGTCACCACC CCAGCTTCAA AAGATAAAAA CGGAGTGAGC ACGGTTGCAT GGACTGGAAT 27553 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TCACCACC CCAGCTTCAA AAGATAAAAA CGGAGTGAGC ACGGTTGCAT GGACTGGAAT 419 GTCAAGCTTA CTCATGCTCT TTGCTTCGTT CGTGCTTGCT TAGTTCACAG AGTGTGTCCT 27613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAGCTTA CTCATGCTCT TTGCTTCGTT CGTGCTTGCT TAGTTCACAG AGTGTGTCCT 479 TCAAGTACTG GGTAAATGTT GGTGAATTTC TTTGTTTCAG TATTTATTTA GGGAATTGAA 27673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGTACTG GGTAAATGTT GGTGAATTTC TTTGTTTCAG TATTTATTTA GGGAATTGAA 539 AGATTGTACT CCAGACTTGA TCGCTTTTAT TATGTGAAGT TTCCAATTGA GATGAACTAA 27733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGTACT CCAGACTTGA TCGCTTTTAT TATGTGAAGT TTCCAATTGA GATGAACTAA 599 ATGAAGCTAA ATTGATGTAT GAATCGTATT GCATAA 27769 |||||||||| |||||||||| |||||||||| ||| || ATGAAGCTAA ATTGATGTAT GAATCGTATT GCAAAA 635 hqPGS_C08HBa0060C12.1+_SGN-E376016+ (24734 25049,25363 25407,27496 27769) ******************************************************************************** EST sequence 190 +strand 444 n (File: SGN-E378444+) 1 AGAAAAATGC TCTCCTCCAA GCTCTCCTGG TTGATCACGG CCGCGATCAC GGCGGCGCTA 61 CTGTCGCCAA CCACCATAGA GGCACAAACG CCGTCGTGTG CTTCTCAACT TGTCCCCTGT 121 GCAGCTTTCC TCAACTCAAC CAAACCACCG GCTTCTTGCT GTGACCCACT AAGAGAAGCC 181 GTGACCAAAG ATCTTCAATG TCTCTGCAAA CTTTACGAAA ATCCCGCTTT GTTGATTTCT 241 CTCGGTATTA ACGTTACTCA AGCTATTGAA CTTCCTAAGT ACTGTAACAT CCCTGGCGAT 301 GTTTCCGCTT GTAAAGCGGC TGCTCCTAGT TCAAGTTCTC CTTCTGGGAA AACGCCACCA 361 GTCACCACCC CAGCTTCAAA AGATAAAAAC GGAGTGAGCA CGGTTGCATG GACTGGAATG 421 TCAAGCTTAC TCATGCTCTT TGCT Predicted gene structure (within gDNA segment 24134 to 28188): Exon 1 24734 25049 ( 316 n); cDNA 1 316 ( 316 n); score: 1.000 Intron 1 25050 25362 ( 313 n); Pd: 0.968 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 25363 25407 ( 45 n); cDNA 317 361 ( 45 n); score: 1.000 Intron 2 25408 27495 (2088 n); Pd: 0.988 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 27496 27578 ( 83 n); cDNA 362 444 ( 83 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E378444+ 1.000 444 1.000 C PGS_C08HBa0060C12.1+_SGN-E378444+ (24734 25049,25363 25407,27496 27578) Alignment (genomic DNA sequence = upper lines): AGAAAAATGC TCTCCTCCAA GCTCTCCTGG TTGATCACGG CCGCGATCAC GGCGGCGCTA 24793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAATGC TCTCCTCCAA GCTCTCCTGG TTGATCACGG CCGCGATCAC GGCGGCGCTA 60 CTGTCGCCAA CCACCATAGA GGCACAAACG CCGTCGTGTG CTTCTCAACT TGTCCCCTGT 24853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCGCCAA CCACCATAGA GGCACAAACG CCGTCGTGTG CTTCTCAACT TGTCCCCTGT 120 GCAGCTTTCC TCAACTCAAC CAAACCACCG GCTTCTTGCT GTGACCCACT AAGAGAAGCC 24913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTTTCC TCAACTCAAC CAAACCACCG GCTTCTTGCT GTGACCCACT AAGAGAAGCC 180 GTGACCAAAG ATCTTCAATG TCTCTGCAAA CTTTACGAAA ATCCCGCTTT GTTGATTTCT 24973 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCAAAG ATCTTCAATG TCTCTGCAAA CTTTACGAAA ATCCCGCTTT GTTGATTTCT 240 CTCGGTATTA ACGTTACTCA AGCTATTGAA CTTCCTAAGT ACTGTAACAT CCCTGGCGAT 25033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGTATTA ACGTTACTCA AGCTATTGAA CTTCCTAAGT ACTGTAACAT CCCTGGCGAT 300 GTTTCCGCTT GTAAAGGTAG GATTTATTTA TTTTTTAGTT CAAACCCCAG GTGACTTGAA 25093 |||||||||| |||||| GTTTCCGCTT GTAAAG.... .......... .......... .......... .......... 316 TTGGGGCTGA ATTGGAGTTG ATACCGCTGT TTTACTTGGA ATGAAGCAAA ATTTCTACTT 25153 .......... .......... .......... .......... .......... .......... 316 CAAATCTGAA ATTTTCCATT TTTGGTTTTC TGTTCATCTT ATTTACTTTG TTGGGTATTT 25213 .......... .......... .......... .......... .......... .......... 316 AGAAAAAAAA ACAAATCTGG GAATGGTAGG GAATTTTGTT TGATAAATAA TTGGGGCTTT 25273 .......... .......... .......... .......... .......... .......... 316 AAATATTTCT TCTGTAATTT GTTACTGTCG TTATTGATTT AGCATTAGTT ATGCTGTTTA 25333 .......... .......... .......... .......... .......... .......... 316 TTTATTTATT TGTTGTTTTT TCTCTGCAGC GGCTGCTCCT AGTTCAAGTT CTCCTTCTGG 25393 | |||||||||| |||||||||| |||||||||| .......... .......... .........C GGCTGCTCCT AGTTCAAGTT CTCCTTCTGG 347 GAAAACGCCA CCAGGTAACT GAGATTAAAT TGCTTTTTGT TTCAACTTTG TTAACACTGA 25453 |||||||||| |||| GAAAACGCCA CCAG...... .......... .......... .......... .......... 361 GTTAAAAGTA GTCAATTGAT GAACAATTTC GGAGTATGCA TCAATTTGAT TTAATCTTTT 25513 .......... .......... .......... .......... .......... .......... 361 TTGTTAATTA TTGATCCTTG CTCCTTTAAG TTTTACTGCA TCGTGATCCA TAGGTGTTTC 25573 .......... .......... .......... .......... .......... .......... 361 TAGTTCCATT TATTTTTGCT TGGCCTTATT GAACTTTGCA CATATGGTAG TGTTTGTATT 25633 .......... .......... .......... .......... .......... .......... 361 GCTAATTGTA CTTATTAATT ATTCTTTGAA AAAAAAGTTT GACTACTGGT GCTTTATATA 25693 .......... .......... .......... .......... .......... .......... 361 GTCACTTAAA AGATAATTTT GTAAGAAAAG AATGTTCAGT AGTTATTTTC ACAGATATTT 25753 .......... .......... .......... .......... .......... .......... 361 TGATTGAATG GTTTGAAAAG AAAAAATAAT AGCATTTCCA CACGAAAGCT TTCTACTATT 25813 .......... .......... .......... .......... .......... .......... 361 TCAGTCAGAA TCTGTTTCCA ACCATTCGTT TTACCAGTAA GCTGGTTCGG TGGGAAATGG 25873 .......... .......... .......... .......... .......... .......... 361 TGGAAAAATT ATGTTTTAAA ACGCAAATTT CCCAATGATT CGTTGTGGAA AACATCTGCT 25933 .......... .......... .......... .......... .......... .......... 361 TCTAGTAGTG GACGAAGCCA AGGTTTCAAC TTTATAGGTT TAGAGCTATG ATTTCAACTT 25993 .......... .......... .......... .......... .......... .......... 361 TATAAATCGA GTTTATTCCT GCTTTGAAGA ATGCGTATTC GGGCTTCAAG CTTGTGGAAC 26053 .......... .......... .......... .......... .......... .......... 361 TATACTGGGT ATATTGTTGT TGATGTAATG ATGTTGTATC CAGATTTCTA GTTCCACACC 26113 .......... .......... .......... .......... .......... .......... 361 TGCTTTTATG GCGTTATGGG ATAGCCTTTG TTAAATTTAA ATGATAGCAC AAAAATCCAA 26173 .......... .......... .......... .......... .......... .......... 361 AGGTTGACTT GATATCGCTG TCCTTGTTCA ATGATTCAGA AATTTGATAA CATAGCTATA 26233 .......... .......... .......... .......... .......... .......... 361 TTACTTGACG TTTTCAAACT ACTAAATAAG TTTTCACCAA GTAACTTGTC ATATACGATC 26293 .......... .......... .......... .......... .......... .......... 361 TTTGAAATGA GACGAGACAT AATATTTTGT TGCTTTTTCA AAACAAGAAC GTGAGTAGAT 26353 .......... .......... .......... .......... .......... .......... 361 TGTGATATAC TATAAATTTG TGGTCCAACA AGAATAGTTA TGTTGGACTT ATGGATGCAC 26413 .......... .......... .......... .......... .......... .......... 361 TCGACATGTT TTGTTCATTC TGTGTTATGA TAAAATTTCC TTAGATGTCA AATTAATTTG 26473 .......... .......... .......... .......... .......... .......... 361 GTGTCAGACA GATAAACCTT TTTAGTGATG TCTCTCTTTG TTTGCACCTT CGACGATTAT 26533 .......... .......... .......... .......... .......... .......... 361 TGGGAAAACA CAAAATAAAA ATATTGAATT ACATCGGGTG AGAAATCAAA TTCATGCAAA 26593 .......... .......... .......... .......... .......... .......... 361 TAAGTTTTTT GTTTCCTTCT CTTTCAAATT TCCTGTCCTT CCTGTTTTAA TCAAGTTTCT 26653 .......... .......... .......... .......... .......... .......... 361 CTATGGTTGC AAACTACTTT ACATTTTCCC CCCTACACGA TCATTAATTG TTTCTAGTGA 26713 .......... .......... .......... .......... .......... .......... 361 AAACTTAAGT TGAAGTGTTC ACCCTGATTC TTATTTCTTA ATGGTGTTCA ATCAATTTTA 26773 .......... .......... .......... .......... .......... .......... 361 TGGTGTTCAA TCAATCTTAG ATCTTCAGCC AAAAAAATTG ACCTACTTCG TAAAGCTTAA 26833 .......... .......... .......... .......... .......... .......... 361 TTTGAGGAAT CAAGCTGTTT CTTAATAGAA AAGTTGAAAA AGTCGTTCAT GGTGGAAATG 26893 .......... .......... .......... .......... .......... .......... 361 AAAATGTTCC GACTTCATGT AATTATTAAG AGAGACATTC TTCTCAATGT TAAGAATCTT 26953 .......... .......... .......... .......... .......... .......... 361 GTTCTTTCTT AACCAATTAG CCATTGGAAA TATGCAGAGC AATTTCTCTT GGATGTTGCT 27013 .......... .......... .......... .......... .......... .......... 361 TTTTGTCTTT CTACATAGCT ATGTAATAAG TTTTTAAAGT CTACTTTTAT GGCCTTACCC 27073 .......... .......... .......... .......... .......... .......... 361 TGATCGTTTT GTCTTTCTAT AGTAAGTTCA CTTTTCTTCT GTTTTCCACC TCTTGAGTCA 27133 .......... .......... .......... .......... .......... .......... 361 TGCCGATTGA AGGTTTTTCC AACGCTGGCA AAGAAAAGAA GAACAGAGAT AGAAGGTGGC 27193 .......... .......... .......... .......... .......... .......... 361 AATATTTATT ACAACTTCCG CCGAGTAATA TTTTACCTCG TTTAATGTTA TGTGCCCCAG 27253 .......... .......... .......... .......... .......... .......... 361 GTGCTTTGAG ATTTTGTGGC AGTTCGGAGT GGAATGTGGC ATATTTGTTA TGCTACTCGA 27313 .......... .......... .......... .......... .......... .......... 361 CTAACGATCA TAACTTTAGT AATTATGTGT GGGAGTATCT TGTTTAGGCA TTTTAGTCAT 27373 .......... .......... .......... .......... .......... .......... 361 TAACCTGGAC ATGTGGGATT AGCCAAATGG AGAACGGAAA CATCTGTCTA AATCATATGA 27433 .......... .......... .......... .......... .......... .......... 361 TTCGTGTTTA ACTTGCATTG CATTCTTGCT AACTGTATTT TTCTCTTGAT GAAACTTTAC 27493 .......... .......... .......... .......... .......... .......... 361 AGTCACCACC CCAGCTTCAA AAGATAAAAA CGGAGTGAGC ACGGTTGCAT GGACTGGAAT 27553 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TCACCACC CCAGCTTCAA AAGATAAAAA CGGAGTGAGC ACGGTTGCAT GGACTGGAAT 419 GTCAAGCTTA CTCATGCTCT TTGCT 27578 |||||||||| |||||||||| ||||| GTCAAGCTTA CTCATGCTCT TTGCT 444 hqPGS_C08HBa0060C12.1+_SGN-E378444+ (24734 25049,25363 25407,27496 27578) ******************************************************************************** EST sequence 145 +strand 444 n (File: SGN-E318895+) 1 CGATCACGGC GGCGCTACTG TCGCCAACCA CCATAGAGGC ACAAACGCCG TCGTGTGCTT 61 CTCAACTTGT CCCCTGTGCA GCTTTCCTCA ACTCAACCAA ACCACCGGCT TCTTGCTGTG 121 ACCCACTAAG AGAAGCCGTG ACCAAAGATC TTCAATGTCT CTGCAAACTT TACGAAAATC 181 CCGCTTTGTT GATTTCTCTC GGTATTAACG TTACTCAAGC TATTGAACTT CCTAAGTACT 241 GTAACATCCC TGGCGATGTT TCCGCTTGTA AAGCGGCTGC TCCTAGTTCA AGTTCTCCTT 301 CTGGGAAAAC GCCACCAGTC ACCACCCCAG CTTCAAAAGA TAAAAACGGA GTGAGCACGG 361 TTGCATGGAC TGGAATGTCA AGCTTACTCA TGCTCTTTGC TTCGTTCGTG CTTGCTTAGT 421 TCACAGAGTG TGTCCTTCAA GTAC Predicted gene structure (within gDNA segment 24177 to 28231): Exon 1 24777 25049 ( 273 n); cDNA 1 273 ( 273 n); score: 1.000 Intron 1 25050 25362 ( 313 n); Pd: 0.968 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 25363 25407 ( 45 n); cDNA 274 318 ( 45 n); score: 1.000 Intron 2 25408 27495 (2088 n); Pd: 0.988 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 27496 27621 ( 126 n); cDNA 319 444 ( 126 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E318895+ 1.000 444 1.000 C PGS_C08HBa0060C12.1+_SGN-E318895+ (24777 25049,25363 25407,27496 27621) Alignment (genomic DNA sequence = upper lines): CGATCACGGC GGCGCTACTG TCGCCAACCA CCATAGAGGC ACAAACGCCG TCGTGTGCTT 24836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCACGGC GGCGCTACTG TCGCCAACCA CCATAGAGGC ACAAACGCCG TCGTGTGCTT 60 CTCAACTTGT CCCCTGTGCA GCTTTCCTCA ACTCAACCAA ACCACCGGCT TCTTGCTGTG 24896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAACTTGT CCCCTGTGCA GCTTTCCTCA ACTCAACCAA ACCACCGGCT TCTTGCTGTG 120 ACCCACTAAG AGAAGCCGTG ACCAAAGATC TTCAATGTCT CTGCAAACTT TACGAAAATC 24956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCACTAAG AGAAGCCGTG ACCAAAGATC TTCAATGTCT CTGCAAACTT TACGAAAATC 180 CCGCTTTGTT GATTTCTCTC GGTATTAACG TTACTCAAGC TATTGAACTT CCTAAGTACT 25016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCTTTGTT GATTTCTCTC GGTATTAACG TTACTCAAGC TATTGAACTT CCTAAGTACT 240 GTAACATCCC TGGCGATGTT TCCGCTTGTA AAGGTAGGAT TTATTTATTT TTTAGTTCAA 25076 |||||||||| |||||||||| |||||||||| ||| GTAACATCCC TGGCGATGTT TCCGCTTGTA AAG....... .......... .......... 273 ACCCCAGGTG ACTTGAATTG GGGCTGAATT GGAGTTGATA CCGCTGTTTT ACTTGGAATG 25136 .......... .......... .......... .......... .......... .......... 273 AAGCAAAATT TCTACTTCAA ATCTGAAATT TTCCATTTTT GGTTTTCTGT TCATCTTATT 25196 .......... .......... .......... .......... .......... .......... 273 TACTTTGTTG GGTATTTAGA AAAAAAAACA AATCTGGGAA TGGTAGGGAA TTTTGTTTGA 25256 .......... .......... .......... .......... .......... .......... 273 TAAATAATTG GGGCTTTAAA TATTTCTTCT GTAATTTGTT ACTGTCGTTA TTGATTTAGC 25316 .......... .......... .......... .......... .......... .......... 273 ATTAGTTATG CTGTTTATTT ATTTATTTGT TGTTTTTTCT CTGCAGCGGC TGCTCCTAGT 25376 |||| |||||||||| .......... .......... .......... .......... ......CGGC TGCTCCTAGT 287 TCAAGTTCTC CTTCTGGGAA AACGCCACCA GGTAACTGAG ATTAAATTGC TTTTTGTTTC 25436 |||||||||| |||||||||| |||||||||| | TCAAGTTCTC CTTCTGGGAA AACGCCACCA G......... .......... .......... 318 AACTTTGTTA ACACTGAGTT AAAAGTAGTC AATTGATGAA CAATTTCGGA GTATGCATCA 25496 .......... .......... .......... .......... .......... .......... 318 ATTTGATTTA ATCTTTTTTG TTAATTATTG ATCCTTGCTC CTTTAAGTTT TACTGCATCG 25556 .......... .......... .......... .......... .......... .......... 318 TGATCCATAG GTGTTTCTAG TTCCATTTAT TTTTGCTTGG CCTTATTGAA CTTTGCACAT 25616 .......... .......... .......... .......... .......... .......... 318 ATGGTAGTGT TTGTATTGCT AATTGTACTT ATTAATTATT CTTTGAAAAA AAAGTTTGAC 25676 .......... .......... .......... .......... .......... .......... 318 TACTGGTGCT TTATATAGTC ACTTAAAAGA TAATTTTGTA AGAAAAGAAT GTTCAGTAGT 25736 .......... .......... .......... .......... .......... .......... 318 TATTTTCACA GATATTTTGA TTGAATGGTT TGAAAAGAAA AAATAATAGC ATTTCCACAC 25796 .......... .......... .......... .......... .......... .......... 318 GAAAGCTTTC TACTATTTCA GTCAGAATCT GTTTCCAACC ATTCGTTTTA CCAGTAAGCT 25856 .......... .......... .......... .......... .......... .......... 318 GGTTCGGTGG GAAATGGTGG AAAAATTATG TTTTAAAACG CAAATTTCCC AATGATTCGT 25916 .......... .......... .......... .......... .......... .......... 318 TGTGGAAAAC ATCTGCTTCT AGTAGTGGAC GAAGCCAAGG TTTCAACTTT ATAGGTTTAG 25976 .......... .......... .......... .......... .......... .......... 318 AGCTATGATT TCAACTTTAT AAATCGAGTT TATTCCTGCT TTGAAGAATG CGTATTCGGG 26036 .......... .......... .......... .......... .......... .......... 318 CTTCAAGCTT GTGGAACTAT ACTGGGTATA TTGTTGTTGA TGTAATGATG TTGTATCCAG 26096 .......... .......... .......... .......... .......... .......... 318 ATTTCTAGTT CCACACCTGC TTTTATGGCG TTATGGGATA GCCTTTGTTA AATTTAAATG 26156 .......... .......... .......... .......... .......... .......... 318 ATAGCACAAA AATCCAAAGG TTGACTTGAT ATCGCTGTCC TTGTTCAATG ATTCAGAAAT 26216 .......... .......... .......... .......... .......... .......... 318 TTGATAACAT AGCTATATTA CTTGACGTTT TCAAACTACT AAATAAGTTT TCACCAAGTA 26276 .......... .......... .......... .......... .......... .......... 318 ACTTGTCATA TACGATCTTT GAAATGAGAC GAGACATAAT ATTTTGTTGC TTTTTCAAAA 26336 .......... .......... .......... .......... .......... .......... 318 CAAGAACGTG AGTAGATTGT GATATACTAT AAATTTGTGG TCCAACAAGA ATAGTTATGT 26396 .......... .......... .......... .......... .......... .......... 318 TGGACTTATG GATGCACTCG ACATGTTTTG TTCATTCTGT GTTATGATAA AATTTCCTTA 26456 .......... .......... .......... .......... .......... .......... 318 GATGTCAAAT TAATTTGGTG TCAGACAGAT AAACCTTTTT AGTGATGTCT CTCTTTGTTT 26516 .......... .......... .......... .......... .......... .......... 318 GCACCTTCGA CGATTATTGG GAAAACACAA AATAAAAATA TTGAATTACA TCGGGTGAGA 26576 .......... .......... .......... .......... .......... .......... 318 AATCAAATTC ATGCAAATAA GTTTTTTGTT TCCTTCTCTT TCAAATTTCC TGTCCTTCCT 26636 .......... .......... .......... .......... .......... .......... 318 GTTTTAATCA AGTTTCTCTA TGGTTGCAAA CTACTTTACA TTTTCCCCCC TACACGATCA 26696 .......... .......... .......... .......... .......... .......... 318 TTAATTGTTT CTAGTGAAAA CTTAAGTTGA AGTGTTCACC CTGATTCTTA TTTCTTAATG 26756 .......... .......... .......... .......... .......... .......... 318 GTGTTCAATC AATTTTATGG TGTTCAATCA ATCTTAGATC TTCAGCCAAA AAAATTGACC 26816 .......... .......... .......... .......... .......... .......... 318 TACTTCGTAA AGCTTAATTT GAGGAATCAA GCTGTTTCTT AATAGAAAAG TTGAAAAAGT 26876 .......... .......... .......... .......... .......... .......... 318 CGTTCATGGT GGAAATGAAA ATGTTCCGAC TTCATGTAAT TATTAAGAGA GACATTCTTC 26936 .......... .......... .......... .......... .......... .......... 318 TCAATGTTAA GAATCTTGTT CTTTCTTAAC CAATTAGCCA TTGGAAATAT GCAGAGCAAT 26996 .......... .......... .......... .......... .......... .......... 318 TTCTCTTGGA TGTTGCTTTT TGTCTTTCTA CATAGCTATG TAATAAGTTT TTAAAGTCTA 27056 .......... .......... .......... .......... .......... .......... 318 CTTTTATGGC CTTACCCTGA TCGTTTTGTC TTTCTATAGT AAGTTCACTT TTCTTCTGTT 27116 .......... .......... .......... .......... .......... .......... 318 TTCCACCTCT TGAGTCATGC CGATTGAAGG TTTTTCCAAC GCTGGCAAAG AAAAGAAGAA 27176 .......... .......... .......... .......... .......... .......... 318 CAGAGATAGA AGGTGGCAAT ATTTATTACA ACTTCCGCCG AGTAATATTT TACCTCGTTT 27236 .......... .......... .......... .......... .......... .......... 318 AATGTTATGT GCCCCAGGTG CTTTGAGATT TTGTGGCAGT TCGGAGTGGA ATGTGGCATA 27296 .......... .......... .......... .......... .......... .......... 318 TTTGTTATGC TACTCGACTA ACGATCATAA CTTTAGTAAT TATGTGTGGG AGTATCTTGT 27356 .......... .......... .......... .......... .......... .......... 318 TTAGGCATTT TAGTCATTAA CCTGGACATG TGGGATTAGC CAAATGGAGA ACGGAAACAT 27416 .......... .......... .......... .......... .......... .......... 318 CTGTCTAAAT CATATGATTC GTGTTTAACT TGCATTGCAT TCTTGCTAAC TGTATTTTTC 27476 .......... .......... .......... .......... .......... .......... 318 TCTTGATGAA ACTTTACAGT CACCACCCCA GCTTCAAAAG ATAAAAACGG AGTGAGCACG 27536 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T CACCACCCCA GCTTCAAAAG ATAAAAACGG AGTGAGCACG 359 GTTGCATGGA CTGGAATGTC AAGCTTACTC ATGCTCTTTG CTTCGTTCGT GCTTGCTTAG 27596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCATGGA CTGGAATGTC AAGCTTACTC ATGCTCTTTG CTTCGTTCGT GCTTGCTTAG 419 TTCACAGAGT GTGTCCTTCA AGTAC 27621 |||||||||| |||||||||| ||||| TTCACAGAGT GTGTCCTTCA AGTAC 444 hqPGS_C08HBa0060C12.1+_SGN-E318895+ (24777 25049,25363 25407,27496 27621) ******************************************************************************** EST sequence 144 +strand 460 n (File: SGN-E243215+) 1 TTATTGTAGA TGACCAATTT TTTCTTCGAA TACGAAATTA AATTACAATA CACACAAAAA 61 AAATATTTGA ATTTTTTTTA TTTAAACTAA GGAATGAAAG AAAAAAACAA AATAAGAATA 121 AGAAACTCAA ATTATTATAA TAAAAGAAGT CAAAAAATAA TTTTTGTATG AAAAAATTAA 181 AATATACCTT GAACTTTGAT AGAAGAATCA TATATATCCC TAAATATTTT TTTTAAAAAA 241 AAATTAGAAG TAACAAATAT AAATTTAAAA CTAATTTTTT AACTTTCGTT AAATGAAGGG 301 TATATGTGAG CCATTTTCTA ACGGCAGGGG TATATGTGAG CCGTTTGTAT AACGATAAGG 361 GCATATATGA ACCACTTTTA TTACGAGGGA TATATCAGCT CTAAATGACA AAGTTGAGAG 421 GTATATCAGA CCCTTTTCCC TATTTTTTAA AATTTCATAC Predicted gene structure (within gDNA segment 23498 to 25877): Exon 1 24098 24482 ( 385 n); cDNA 1 386 ( 386 n); score: 0.901 MATCH C08HBa0060C12.1+ SGN-E243215+ 0.901 385 0.837 C PGS_C08HBa0060C12.1+_SGN-E243215+ (24098 24482) Alignment (genomic DNA sequence = upper lines): TTATTGTAGA TGACCAAAAT TTTTCTTCGA ATACGAAATT AAATTACTAT ACACACAAAA 24157 |||||||||| ||||| || | |||||||||| |||||||||| ||||||| || |||||||||| TTATTGTAGA TGACC-AATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 59 AAAATAGTTT AATTTTTTAT TCTTTAAACT AAGGAATGAA AGAAAACAAC AAAATAAGAA 24217 |||||| || |||||||| | | |||||||| |||||||||| |||||| ||| |||||||||| AAAATATTTG AATTTTTT-T TATTTAAACT AAGGAATGAA AGAAAAAAAC AAAATAAGAA 118 TAAGAAATTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTTATGTA TGAAAAAAAT 24277 ||||||| || |||| ||||| |||||||||| |||||||||| ||||| |||| || ||||||| TAAGAAACTC AAATTATTAT AATAAAAGAA GTCAAAAAAT AATTTTTGTA TG-AAAAAAT 177 TAAAATATAC CTTGAACTTT GATAGAAGAA TCATATATAT CCCTAAATA- ATTTTTT--A 24334 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| | TAAAATATAC CTTGAACTTT GATAGAAGAA TCATATATAT CCCTAAATAT TTTTTTTAAA 237 AAAAAATTAG AAGTAATAAA TATAAATTTA AAACTAATTT TTTAACTTCC GTGTTAAATG 24394 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||| | |||||||| AAAAAATTAG AAGTAACAAA TATAAATTTA AAACTAATTT TTTAACTTTC --GTTAAATG 295 AATGGTATAT GTGAGCCATT TTGTAACGGC A-GAATATAT GTGAGCTGTT TGTATAACGA 24453 || ||||||| |||||||||| || ||||||| | | ||||| |||||| ||| |||||||||| AAGGGTATAT GTGAGCCATT TTCTAACGGC AGGGGTATAT GTGAGCCGTT TGTATAACGA 355 TAA-GG-ATA TATGAACCAC TTTTATAACG A 24482 ||| || ||| |||||||||| |||||| ||| | TAAGGGCATA TATGAACCAC TTTTATTACG A 386 hqPGS_C08HBa0060C12.1+_SGN-E243215+ (24098 24482) ******************************************************************************** EST sequence 309 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 23616 to 31759): Exon 1 24226 24501 ( 276 n); cDNA 1 278 ( 278 n); score: 0.821 Intron 1 24502 28748 (4247 n); Pd: 0.000 (s: 0.77), Pa: 0.915 (s: 0) Exon 2 28749 28766 ( 18 n); cDNA 279 295 ( 17 n); score: 0.556 Intron 2 28767 30677 (1911 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 3 30678 30690 ( 13 n); cDNA 296 308 ( 13 n); score: 0.692 MATCH C08HBa0060C12.1+ SGN-E578389- 0.821 307 0.438 C PGS_C08HBa0060C12.1+_SGN-E578389- (24226 24501,28749 28766,30678 30690) Alignment (genomic DNA sequence = upper lines): TCAAATAATT ATAATAAAAG AAGTCA-AAA AATAATTTAT GTATGAAAAA AA-TTAAAAT 24283 |||||||||| ||||||| | |||||| ||| |||||||||| |||| ||||| || || |||| TCAAATAATT ATAATAA-AT AAGTCAAAAA AATAATTTAT GTATTAAAAA AATTTGAAAT 59 ATACCTTGAA CTTTGATAGA AGAATCATAT ATATCCCTAA ATA-ATTTTT TAAAAAAATT 24342 |||||||||| |||||| | | |||||||||| || |||||| ||| |||||| | |||||| ATACCTTGAA CTTTGAAAAA AGAATCATAT ATGCCCCTAA ATATATTTTT TTTTAAAATT 119 AGAAGTAATA AATATAAATT TAAAACTAAT TTTTTAACTT CCGTGTTAAA TGAATGGTAT 24402 | |||||| | | |||||||| ||||| |||| ||||| |||| | |||||| |||| ||||| A-AAGTAA-A ATTATAAATT TAAAAGTAAT TTTTTCACTT TC--GTTAAA TGAAGGGTAT 175 ATGTGAGC-C ATTTTGTAAC GGCAGA-ATA TATGTGAGCT GTTTGTATAA CGATAA-GG- 24458 || ||||| | |||||||||| |||||| || ||||||| | ||||||||| || ||| || ATATGAGCTC ATTTTGTAAC GGCAGAGGTA TATGTGAACC ATTTGTATAA CGGTAAGGGT 235 ATATATGAAC CACTTTTATA ACGAAGGTTA TATCAGCTCC AAACTCTTTT CCCTAAAAAG 24518 |||||||| | |||||| ||| |||| || || |||||| | | ||| ATATATGAGC CACTTTCATA ACGAGGGGTA TATCAGTTTC AAA....... .......... 278 TATTTTACTT TAATAATTTA TTCTAATTTT TTTGAATTAA ATAAAAAAAG TAACTATAAT 24578 .......... .......... .......... .......... .......... .......... 278 TTTTAATACC TACATCAATT AAACGAAACA GACGATAGAC CGTGCATGTG CATTTCTATG 24638 .......... .......... .......... .......... .......... .......... 278 AATGTAAGCA TTTAATTCAC ACAAGAAAAC TCCTCACTAA TTAAAGGAAA AAAAGTAGTG 24698 .......... .......... .......... .......... .......... .......... 278 AACACTTTTT CCGTGCATAG TTAAAAATTA TACAGAGAAA AATGCTCTCC TCCAAGCTCT 24758 .......... .......... .......... .......... .......... .......... 278 CCTGGTTGAT CACGGCCGCG ATCACGGCGG CGCTACTGTC GCCAACCACC ATAGAGGCAC 24818 .......... .......... .......... .......... .......... .......... 278 AAACGCCGTC GTGTGCTTCT CAACTTGTCC CCTGTGCAGC TTTCCTCAAC TCAACCAAAC 24878 .......... .......... .......... .......... .......... .......... 278 CACCGGCTTC TTGCTGTGAC CCACTAAGAG AAGCCGTGAC CAAAGATCTT CAATGTCTCT 24938 .......... .......... .......... .......... .......... .......... 278 GCAAACTTTA CGAAAATCCC GCTTTGTTGA TTTCTCTCGG TATTAACGTT ACTCAAGCTA 24998 .......... .......... .......... .......... .......... .......... 278 TTGAACTTCC TAAGTACTGT AACATCCCTG GCGATGTTTC CGCTTGTAAA GGTAGGATTT 25058 .......... .......... .......... .......... .......... .......... 278 ATTTATTTTT TAGTTCAAAC CCCAGGTGAC TTGAATTGGG GCTGAATTGG AGTTGATACC 25118 .......... .......... .......... .......... .......... .......... 278 GCTGTTTTAC TTGGAATGAA GCAAAATTTC TACTTCAAAT CTGAAATTTT CCATTTTTGG 25178 .......... .......... .......... .......... .......... .......... 278 TTTTCTGTTC ATCTTATTTA CTTTGTTGGG TATTTAGAAA AAAAAACAAA TCTGGGAATG 25238 .......... .......... .......... .......... .......... .......... 278 GTAGGGAATT TTGTTTGATA AATAATTGGG GCTTTAAATA TTTCTTCTGT AATTTGTTAC 25298 .......... .......... .......... .......... .......... .......... 278 TGTCGTTATT GATTTAGCAT TAGTTATGCT GTTTATTTAT TTATTTGTTG TTTTTTCTCT 25358 .......... .......... .......... .......... .......... .......... 278 GCAGCGGCTG CTCCTAGTTC AAGTTCTCCT TCTGGGAAAA CGCCACCAGG TAACTGAGAT 25418 .......... .......... .......... .......... .......... .......... 278 TAAATTGCTT TTTGTTTCAA CTTTGTTAAC ACTGAGTTAA AAGTAGTCAA TTGATGAACA 25478 .......... .......... .......... .......... .......... .......... 278 ATTTCGGAGT ATGCATCAAT TTGATTTAAT CTTTTTTGTT AATTATTGAT CCTTGCTCCT 25538 .......... .......... .......... .......... .......... .......... 278 TTAAGTTTTA CTGCATCGTG ATCCATAGGT GTTTCTAGTT CCATTTATTT TTGCTTGGCC 25598 .......... .......... .......... .......... .......... .......... 278 TTATTGAACT TTGCACATAT GGTAGTGTTT GTATTGCTAA TTGTACTTAT TAATTATTCT 25658 .......... .......... .......... .......... .......... .......... 278 TTGAAAAAAA AGTTTGACTA CTGGTGCTTT ATATAGTCAC TTAAAAGATA ATTTTGTAAG 25718 .......... .......... .......... .......... .......... .......... 278 AAAAGAATGT TCAGTAGTTA TTTTCACAGA TATTTTGATT GAATGGTTTG AAAAGAAAAA 25778 .......... .......... .......... .......... .......... .......... 278 ATAATAGCAT TTCCACACGA AAGCTTTCTA CTATTTCAGT CAGAATCTGT TTCCAACCAT 25838 .......... .......... .......... .......... .......... .......... 278 TCGTTTTACC AGTAAGCTGG TTCGGTGGGA AATGGTGGAA AAATTATGTT TTAAAACGCA 25898 .......... .......... .......... .......... .......... .......... 278 AATTTCCCAA TGATTCGTTG TGGAAAACAT CTGCTTCTAG TAGTGGACGA AGCCAAGGTT 25958 .......... .......... .......... .......... .......... .......... 278 TCAACTTTAT AGGTTTAGAG CTATGATTTC AACTTTATAA ATCGAGTTTA TTCCTGCTTT 26018 .......... .......... .......... .......... .......... .......... 278 GAAGAATGCG TATTCGGGCT TCAAGCTTGT GGAACTATAC TGGGTATATT GTTGTTGATG 26078 .......... .......... .......... .......... .......... .......... 278 TAATGATGTT GTATCCAGAT TTCTAGTTCC ACACCTGCTT TTATGGCGTT ATGGGATAGC 26138 .......... .......... .......... .......... .......... .......... 278 CTTTGTTAAA TTTAAATGAT AGCACAAAAA TCCAAAGGTT GACTTGATAT CGCTGTCCTT 26198 .......... .......... .......... .......... .......... .......... 278 GTTCAATGAT TCAGAAATTT GATAACATAG CTATATTACT TGACGTTTTC AAACTACTAA 26258 .......... .......... .......... .......... .......... .......... 278 ATAAGTTTTC ACCAAGTAAC TTGTCATATA CGATCTTTGA AATGAGACGA GACATAATAT 26318 .......... .......... .......... .......... .......... .......... 278 TTTGTTGCTT TTTCAAAACA AGAACGTGAG TAGATTGTGA TATACTATAA ATTTGTGGTC 26378 .......... .......... .......... .......... .......... .......... 278 CAACAAGAAT AGTTATGTTG GACTTATGGA TGCACTCGAC ATGTTTTGTT CATTCTGTGT 26438 .......... .......... .......... .......... .......... .......... 278 TATGATAAAA TTTCCTTAGA TGTCAAATTA ATTTGGTGTC AGACAGATAA ACCTTTTTAG 26498 .......... .......... .......... .......... .......... .......... 278 TGATGTCTCT CTTTGTTTGC ACCTTCGACG ATTATTGGGA AAACACAAAA TAAAAATATT 26558 .......... .......... .......... .......... .......... .......... 278 GAATTACATC GGGTGAGAAA TCAAATTCAT GCAAATAAGT TTTTTGTTTC CTTCTCTTTC 26618 .......... .......... .......... .......... .......... .......... 278 AAATTTCCTG TCCTTCCTGT TTTAATCAAG TTTCTCTATG GTTGCAAACT ACTTTACATT 26678 .......... .......... .......... .......... .......... .......... 278 TTCCCCCCTA CACGATCATT AATTGTTTCT AGTGAAAACT TAAGTTGAAG TGTTCACCCT 26738 .......... .......... .......... .......... .......... .......... 278 GATTCTTATT TCTTAATGGT GTTCAATCAA TTTTATGGTG TTCAATCAAT CTTAGATCTT 26798 .......... .......... .......... .......... .......... .......... 278 CAGCCAAAAA AATTGACCTA CTTCGTAAAG CTTAATTTGA GGAATCAAGC TGTTTCTTAA 26858 .......... .......... .......... .......... .......... .......... 278 TAGAAAAGTT GAAAAAGTCG TTCATGGTGG AAATGAAAAT GTTCCGACTT CATGTAATTA 26918 .......... .......... .......... .......... .......... .......... 278 TTAAGAGAGA CATTCTTCTC AATGTTAAGA ATCTTGTTCT TTCTTAACCA ATTAGCCATT 26978 .......... .......... .......... .......... .......... .......... 278 GGAAATATGC AGAGCAATTT CTCTTGGATG TTGCTTTTTG TCTTTCTACA TAGCTATGTA 27038 .......... .......... .......... .......... .......... .......... 278 ATAAGTTTTT AAAGTCTACT TTTATGGCCT TACCCTGATC GTTTTGTCTT TCTATAGTAA 27098 .......... .......... .......... .......... .......... .......... 278 GTTCACTTTT CTTCTGTTTT CCACCTCTTG AGTCATGCCG ATTGAAGGTT TTTCCAACGC 27158 .......... .......... .......... .......... .......... .......... 278 TGGCAAAGAA AAGAAGAACA GAGATAGAAG GTGGCAATAT TTATTACAAC TTCCGCCGAG 27218 .......... .......... .......... .......... .......... .......... 278 TAATATTTTA CCTCGTTTAA TGTTATGTGC CCCAGGTGCT TTGAGATTTT GTGGCAGTTC 27278 .......... .......... .......... .......... .......... .......... 278 GGAGTGGAAT GTGGCATATT TGTTATGCTA CTCGACTAAC GATCATAACT TTAGTAATTA 27338 .......... .......... .......... .......... .......... .......... 278 TGTGTGGGAG TATCTTGTTT AGGCATTTTA GTCATTAACC TGGACATGTG GGATTAGCCA 27398 .......... .......... .......... .......... .......... .......... 278 AATGGAGAAC GGAAACATCT GTCTAAATCA TATGATTCGT GTTTAACTTG CATTGCATTC 27458 .......... .......... .......... .......... .......... .......... 278 TTGCTAACTG TATTTTTCTC TTGATGAAAC TTTACAGTCA CCACCCCAGC TTCAAAAGAT 27518 .......... .......... .......... .......... .......... .......... 278 AAAAACGGAG TGAGCACGGT TGCATGGACT GGAATGTCAA GCTTACTCAT GCTCTTTGCT 27578 .......... .......... .......... .......... .......... .......... 278 TCGTTCGTGC TTGCTTAGTT CACAGAGTGT GTCCTTCAAG TACTGGGTAA ATGTTGGTGA 27638 .......... .......... .......... .......... .......... .......... 278 ATTTCTTTGT TTCAGTATTT ATTTAGGGAA TTGAAAGATT GTACTCCAGA CTTGATCGCT 27698 .......... .......... .......... .......... .......... .......... 278 TTTATTATGT GAAGTTTCCA ATTGAGATGA ACTAAATGAA GCTAAATTGA TGTATGAATC 27758 .......... .......... .......... .......... .......... .......... 278 GTATTGCATA AGTTGTGTTT GCATGTTCTT GGTGTATTCA TGGGATATTG TTTCCCCCTC 27818 .......... .......... .......... .......... .......... .......... 278 CCTAATAGCT CCCTTCTTTT TTCTATCGTG AACTGTGCTT AGACGCTTCG TAAAACCGCA 27878 .......... .......... .......... .......... .......... .......... 278 GCGATCTACG AGAGGAGCTG ATAGATGAGT AGACTTCCCC TTTTGATTCA CGGAATGTGA 27938 .......... .......... .......... .......... .......... .......... 278 TCTGGGACAC GATGGGAGTT TGCGTGTCTC GGTAGGAAAG ATATCACCGG AGTATATAGC 27998 .......... .......... .......... .......... .......... .......... 278 ACAAGATCGT CTTTTCTTGC TGCCATGGGG TCGAGATGTG AACAAGGTAA ATCCAATGGG 28058 .......... .......... .......... .......... .......... .......... 278 AACCAAAAAA CGAGGGGTAC TGCATTGGGC AGAAGACGAT CCTTGGTGAC TCGAACTCAC 28118 .......... .......... .......... .......... .......... .......... 278 AACTTTCAAG TTGAAAGTGC AGGGTGTTTG TTTTATAACA CTAACTCCCT TTAAATTGAT 28178 .......... .......... .......... .......... .......... .......... 278 TTCTTAAATT TATTATTTAA AAATAATTTT AAAGCAATTC TCTAAGAAGT CTTTCAAAAA 28238 .......... .......... .......... .......... .......... .......... 278 TTCTTTACGG GTTATATTTG ATATTTTTTT TTAGATCACT ATAATATTTA AAGTGAAAGG 28298 .......... .......... .......... .......... .......... .......... 278 CTAAAATTTA AAATTTAAAA TGCTCATAAA AGTATTTTAA TTTTTTAAAT TTTATATCTA 28358 .......... .......... .......... .......... .......... .......... 278 AATTATTAAA TATACAAGTT GCTTACATAT TAATTACTAA TTATTTATTA ATACATACTC 28418 .......... .......... .......... .......... .......... .......... 278 TCTACATACA TGACAATGGT ATTTTAAAAT AGAAAAAAGA AATAATTTGT TAATAGTTCA 28478 .......... .......... .......... .......... .......... .......... 278 AATAAAAGCG CACACACATT TGATAATTTG TTTACCATTT TTCTATGAAA TTTTTAAAAT 28538 .......... .......... .......... .......... .......... .......... 278 GGAATACTTA AGCAATATAT TTGATCGTAA TTATAATCGA CTTATAAATG AAAATATAAT 28598 .......... .......... .......... .......... .......... .......... 278 AAAGCAAATA AAACGGAACA AAGAGTTTAT CCAGTAATAG AAGCTACTAG AAGAACCTAG 28658 .......... .......... .......... .......... .......... .......... 278 TCAGCTCCAG TCCCCTTCCA TTTTCCTCGC CTCACTACCA AAAGCTAGGG TTTACAGTTT 28718 .......... .......... .......... .......... .......... .......... 278 CTACAATTTC AAAATTTTTT GAATCTGTAG TAATCGTATT TGAAGGTAAT CGGAAAAAGC 28778 | | | | | ||| || .......... .......... .......... TGA-CAAAGT TGAGGGGT.. .......... 295 TATGGACCCG ATGAAGTTGA ATCAACTGAA GCAATTCGTT GAACAGTGCA AATCCAATCC 28838 .......... .......... .......... .......... .......... .......... 295 TTCCATTCTC TCCGATCCTT CTCTTTCATT TTTCCGTGAC TACATTGAGA AGTAAGTACG 28898 .......... .......... .......... .......... .......... .......... 295 CTGTTTAATT CCATTTGAGA ACAGTATTTT TTGTTTTTTT CCATGATCTT ATGCTATTAT 28958 .......... .......... .......... .......... .......... .......... 295 GAACATATGA ATGGATGATG GATCGCTACT TTGCTTTCAG TTACTGTAGT TTTGGATGAG 29018 .......... .......... .......... .......... .......... .......... 295 TGAACTTAAT GTCGATTCAT TTGTTTGATT TTTTTGTTTT TGCAGTCTCG GTGCTAAACT 29078 .......... .......... .......... .......... .......... .......... 295 TCCTCCGGCT GCTTACGACA CCGGCGATTA CAAAGAGGTA TTTTCCTTGC TTCATTATCT 29138 .......... .......... .......... .......... .......... .......... 295 TCTTACTTAG AATTAGTGTG ATGTAATGGT CAATGACGTG GGTTGAAAAT AATGAGGGTC 29198 .......... .......... .......... .......... .......... .......... 295 TGAGGTTCAA ATCCCAGCAC AATTAAAAAA TACTAGTTGA TTTCTTCCCC ATTAGTTACC 29258 .......... .......... .......... .......... .......... .......... 295 TTGTACTTGT TGGTGATTTC TTCCCCCATT AGTTACCTTG TACTTGTTGC GGGTGGGAGG 29318 .......... .......... .......... .......... .......... .......... 295 TGGCTTGTAG CTCGTGGAAT TAGTCTGAGG TGAGGGCAAG TTGGTTTGGA CACCACGGTT 29378 .......... .......... .......... .......... .......... .......... 295 GAAAATAAGT AAATAAAAGA TTATTGTTTC TGATGAGTAA AGTTACTGTA CAATCACCAA 29438 .......... .......... .......... .......... .......... .......... 295 TAGGGAATCT TAATATAATT AACCGGAAGT TTATTATTGT TAAAACTAAT AAAAGAAACG 29498 .......... .......... .......... .......... .......... .......... 295 CTCAAATCAC TATATATATA TATATATATA TATATATATA TATATATATA TATATATACC 29558 .......... .......... .......... .......... .......... .......... 295 AGGGATGTCT CTTATTTATG TCTAACGACT ACTCATGTGA TTTGGAATAG AGTTAGGGTA 29618 .......... .......... .......... .......... .......... .......... 295 TTAAAATTCT TCTAGGTCAA AGATTAAAGA GCTTCATTTA ATATCATCTA TGAATATACA 29678 .......... .......... .......... .......... .......... .......... 295 CTAGGTTGCA CAAAAAAGTT GTTCTTGGAT CAATCCAAAG CCCAACCTCC TCGGGTTCGA 29738 .......... .......... .......... .......... .......... .......... 295 GGCCTAGGTA TGGAAAAATC CTTGGCAGGA GCACTAACCC TGAATGGGAA CCTACTCAGC 29798 .......... .......... .......... .......... .......... .......... 295 ACGAATACGG ATTAGTCGGA CTCCAATGTG TGTACCGGAC ACTAGATGGG AAACAGCTCC 29858 .......... .......... .......... .......... .......... .......... 295 CCCTCCAACC CCCAACACCC ACCCCCAAAA AAAGGATCGA TGACTCTTAA AATCGTGTGT 29918 .......... .......... .......... .......... .......... .......... 295 TTGGATATTT GGATACTACT GAACATGTCC AATTATTTTT CCGAACAATT TAGTCCTATC 29978 .......... .......... .......... .......... .......... .......... 295 ATATGAAAGC AAGTTGTTTA AAAAATTCTG CGGTCTCAAG GAATTAAGAA TTAGTATATT 30038 .......... .......... .......... .......... .......... .......... 295 ATAGAAGCAA GAGATTCAAA ATGGTTGGGA AGTAATGCTC AGTTGTTAGA CTTATTTAGC 30098 .......... .......... .......... .......... .......... .......... 295 TCCACATAGG CAAGTGTGAG GTTTATTAAA CTTCTGATAT GCCTTGGAAG GCAAATTACT 30158 .......... .......... .......... .......... .......... .......... 295 GACTGTTACT GCAGTAAAAT GGGGTTGAAT AGACTGAATA TCTTTAGATG CAGAACACAA 30218 .......... .......... .......... .......... .......... .......... 295 CTAGCATGGG GTTGAGATGC AGATGATTCA TCAACTGATC TGATTATGGG TTTCCTTAAA 30278 .......... .......... .......... .......... .......... .......... 295 TTACCTGCAT GTTTCAACTT TATATGGTTT CTTTAGTTAC TGTATTAGTA TACTCCGTGG 30338 .......... .......... .......... .......... .......... .......... 295 TTTCTCATTA AATATGAGGT AATCGGAAAG TTATACACCC CTCCCTGGAT TTTTATTGTC 30398 .......... .......... .......... .......... .......... .......... 295 TATTGATCTA ACGTTTTCTA TGCAGAAGTC CCATGCGGTG GATGCGAGTG ATGATGAGAT 30458 .......... .......... .......... .......... .......... .......... 295 GGATGATGAT GAGAATGATG CTAATATCAA AGAGACAGTT GAAGAAGAGG AGGAGCCTGA 30518 .......... .......... .......... .......... .......... .......... 295 GATAATTGAA TCTGATATTG AGCTTGATGA GAGTGACACT GTGGAACCTG ACAATGATGA 30578 .......... .......... .......... .......... .......... .......... 295 GCCACAGAAG GTTTGCCATC CGACTTATTT GACATTTTTT CTGTTTTGGA TTTTGAAGGT 30638 .......... .......... .......... .......... .......... .......... 295 TCATGTTTAT TTTTAACATT TCAAATCTGT TTTTTCTAGA TGGGAGACCC TT 30690 | | | |||| || .......... .......... .......... .........A TATCATACCC TT 308 hqPGS_C08HBa0060C12.1+_SGN-E578389- (24226 24501) ******************************************************************************** EST sequence 412 -strand 379 n (File: SGN-E323385-) 1 AGTTCAAGTT CTCCTTCTGG GAAAACGCCA CCAGTCACCA CCCCAGCTTC AAAAGATAAA 61 AACGGAGTGA GCCCGGTTGC ATGGACTGGA ATGTCAAGCT TACTCATGCT CTTTGCTTCG 121 TTCGGGCTTG CTTAGTTCAC AGAGTGTGTC CTTCAAGTAC TGGGTAAATG TTGGTGAATT 181 TCTTTGTTTC AGTATTTATT TAGGGAATTG AAAGATTGTA CTCCAGACTT GATCGCTTTT 241 ATTATGTGAA GTTTCCCATT GAGATGAACT AAATGAAGCT AAATTGATGT ATGAATCGTA 301 TTGCATAAGT TGTGTTTGCA TGTTTTTGGT GAAAAAAAAA CACAAAAACA AAAAAAAAAA 361 AAACTGGAGA CTAGTCTCT Predicted gene structure (within gDNA segment 24764 to 28935): Exon 1 25374 25407 ( 34 n); cDNA 1 34 ( 34 n); score: 1.000 Intron 1 25408 27495 (2088 n); Pd: 0.988 (s: 0), Pa: 0.995 (s: 0.98) Exon 2 27496 27791 ( 296 n); cDNA 35 330 ( 296 n); score: 0.986 PPA cDNA 332 342 MATCH C08HBa0060C12.1+ SGN-E323385- 0.986 330 0.871 C PGS_C08HBa0060C12.1+_SGN-E323385- (25374 25407,27496 27791) Alignment (genomic DNA sequence = upper lines): AGTTCAAGTT CTCCTTCTGG GAAAACGCCA CCAGGTAACT GAGATTAAAT TGCTTTTTGT 25433 |||||||||| |||||||||| |||||||||| |||| AGTTCAAGTT CTCCTTCTGG GAAAACGCCA CCAG...... .......... .......... 34 TTCAACTTTG TTAACACTGA GTTAAAAGTA GTCAATTGAT GAACAATTTC GGAGTATGCA 25493 .......... .......... .......... .......... .......... .......... 34 TCAATTTGAT TTAATCTTTT TTGTTAATTA TTGATCCTTG CTCCTTTAAG TTTTACTGCA 25553 .......... .......... .......... .......... .......... .......... 34 TCGTGATCCA TAGGTGTTTC TAGTTCCATT TATTTTTGCT TGGCCTTATT GAACTTTGCA 25613 .......... .......... .......... .......... .......... .......... 34 CATATGGTAG TGTTTGTATT GCTAATTGTA CTTATTAATT ATTCTTTGAA AAAAAAGTTT 25673 .......... .......... .......... .......... .......... .......... 34 GACTACTGGT GCTTTATATA GTCACTTAAA AGATAATTTT GTAAGAAAAG AATGTTCAGT 25733 .......... .......... .......... .......... .......... .......... 34 AGTTATTTTC ACAGATATTT TGATTGAATG GTTTGAAAAG AAAAAATAAT AGCATTTCCA 25793 .......... .......... .......... .......... .......... .......... 34 CACGAAAGCT TTCTACTATT TCAGTCAGAA TCTGTTTCCA ACCATTCGTT TTACCAGTAA 25853 .......... .......... .......... .......... .......... .......... 34 GCTGGTTCGG TGGGAAATGG TGGAAAAATT ATGTTTTAAA ACGCAAATTT CCCAATGATT 25913 .......... .......... .......... .......... .......... .......... 34 CGTTGTGGAA AACATCTGCT TCTAGTAGTG GACGAAGCCA AGGTTTCAAC TTTATAGGTT 25973 .......... .......... .......... .......... .......... .......... 34 TAGAGCTATG ATTTCAACTT TATAAATCGA GTTTATTCCT GCTTTGAAGA ATGCGTATTC 26033 .......... .......... .......... .......... .......... .......... 34 GGGCTTCAAG CTTGTGGAAC TATACTGGGT ATATTGTTGT TGATGTAATG ATGTTGTATC 26093 .......... .......... .......... .......... .......... .......... 34 CAGATTTCTA GTTCCACACC TGCTTTTATG GCGTTATGGG ATAGCCTTTG TTAAATTTAA 26153 .......... .......... .......... .......... .......... .......... 34 ATGATAGCAC AAAAATCCAA AGGTTGACTT GATATCGCTG TCCTTGTTCA ATGATTCAGA 26213 .......... .......... .......... .......... .......... .......... 34 AATTTGATAA CATAGCTATA TTACTTGACG TTTTCAAACT ACTAAATAAG TTTTCACCAA 26273 .......... .......... .......... .......... .......... .......... 34 GTAACTTGTC ATATACGATC TTTGAAATGA GACGAGACAT AATATTTTGT TGCTTTTTCA 26333 .......... .......... .......... .......... .......... .......... 34 AAACAAGAAC GTGAGTAGAT TGTGATATAC TATAAATTTG TGGTCCAACA AGAATAGTTA 26393 .......... .......... .......... .......... .......... .......... 34 TGTTGGACTT ATGGATGCAC TCGACATGTT TTGTTCATTC TGTGTTATGA TAAAATTTCC 26453 .......... .......... .......... .......... .......... .......... 34 TTAGATGTCA AATTAATTTG GTGTCAGACA GATAAACCTT TTTAGTGATG TCTCTCTTTG 26513 .......... .......... .......... .......... .......... .......... 34 TTTGCACCTT CGACGATTAT TGGGAAAACA CAAAATAAAA ATATTGAATT ACATCGGGTG 26573 .......... .......... .......... .......... .......... .......... 34 AGAAATCAAA TTCATGCAAA TAAGTTTTTT GTTTCCTTCT CTTTCAAATT TCCTGTCCTT 26633 .......... .......... .......... .......... .......... .......... 34 CCTGTTTTAA TCAAGTTTCT CTATGGTTGC AAACTACTTT ACATTTTCCC CCCTACACGA 26693 .......... .......... .......... .......... .......... .......... 34 TCATTAATTG TTTCTAGTGA AAACTTAAGT TGAAGTGTTC ACCCTGATTC TTATTTCTTA 26753 .......... .......... .......... .......... .......... .......... 34 ATGGTGTTCA ATCAATTTTA TGGTGTTCAA TCAATCTTAG ATCTTCAGCC AAAAAAATTG 26813 .......... .......... .......... .......... .......... .......... 34 ACCTACTTCG TAAAGCTTAA TTTGAGGAAT CAAGCTGTTT CTTAATAGAA AAGTTGAAAA 26873 .......... .......... .......... .......... .......... .......... 34 AGTCGTTCAT GGTGGAAATG AAAATGTTCC GACTTCATGT AATTATTAAG AGAGACATTC 26933 .......... .......... .......... .......... .......... .......... 34 TTCTCAATGT TAAGAATCTT GTTCTTTCTT AACCAATTAG CCATTGGAAA TATGCAGAGC 26993 .......... .......... .......... .......... .......... .......... 34 AATTTCTCTT GGATGTTGCT TTTTGTCTTT CTACATAGCT ATGTAATAAG TTTTTAAAGT 27053 .......... .......... .......... .......... .......... .......... 34 CTACTTTTAT GGCCTTACCC TGATCGTTTT GTCTTTCTAT AGTAAGTTCA CTTTTCTTCT 27113 .......... .......... .......... .......... .......... .......... 34 GTTTTCCACC TCTTGAGTCA TGCCGATTGA AGGTTTTTCC AACGCTGGCA AAGAAAAGAA 27173 .......... .......... .......... .......... .......... .......... 34 GAACAGAGAT AGAAGGTGGC AATATTTATT ACAACTTCCG CCGAGTAATA TTTTACCTCG 27233 .......... .......... .......... .......... .......... .......... 34 TTTAATGTTA TGTGCCCCAG GTGCTTTGAG ATTTTGTGGC AGTTCGGAGT GGAATGTGGC 27293 .......... .......... .......... .......... .......... .......... 34 ATATTTGTTA TGCTACTCGA CTAACGATCA TAACTTTAGT AATTATGTGT GGGAGTATCT 27353 .......... .......... .......... .......... .......... .......... 34 TGTTTAGGCA TTTTAGTCAT TAACCTGGAC ATGTGGGATT AGCCAAATGG AGAACGGAAA 27413 .......... .......... .......... .......... .......... .......... 34 CATCTGTCTA AATCATATGA TTCGTGTTTA ACTTGCATTG CATTCTTGCT AACTGTATTT 27473 .......... .......... .......... .......... .......... .......... 34 TTCTCTTGAT GAAACTTTAC AGTCACCACC CCAGCTTCAA AAGATAAAAA CGGAGTGAGC 27533 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TCACCACC CCAGCTTCAA AAGATAAAAA CGGAGTGAGC 72 ACGGTTGCAT GGACTGGAAT GTCAAGCTTA CTCATGCTCT TTGCTTCGTT CGTGCTTGCT 27593 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| CCGGTTGCAT GGACTGGAAT GTCAAGCTTA CTCATGCTCT TTGCTTCGTT CGGGCTTGCT 132 TAGTTCACAG AGTGTGTCCT TCAAGTACTG GGTAAATGTT GGTGAATTTC TTTGTTTCAG 27653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTCACAG AGTGTGTCCT TCAAGTACTG GGTAAATGTT GGTGAATTTC TTTGTTTCAG 192 TATTTATTTA GGGAATTGAA AGATTGTACT CCAGACTTGA TCGCTTTTAT TATGTGAAGT 27713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTATTTA GGGAATTGAA AGATTGTACT CCAGACTTGA TCGCTTTTAT TATGTGAAGT 252 TTCCAATTGA GATGAACTAA ATGAAGCTAA ATTGATGTAT GAATCGTATT GCATAAGTTG 27773 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCATTGA GATGAACTAA ATGAAGCTAA ATTGATGTAT GAATCGTATT GCATAAGTTG 312 TGTTTGCATG TTCTTGGT 27791 |||||||||| || ||||| TGTTTGCATG TTTTTGGT 330 hqPGS_C08HBa0060C12.1+_SGN-E323385- (25374 25407,27496 27791) ******************************************************************************** EST sequence 7 +strand 640 n (File: SGN-E305050+) 1 AGTAATAGAA GCTACTAGAA GAACCTAGTC AGCTCCAGTC CCCTTCCATT TTCCTCGCCT 61 CACTACCAAA AGCTAGGGTT TACAGTTTCT ACAATTTCAA AATTTTTTGA ATCTGTAGTA 121 ATCGTATTTG AAGGTAATCG GAAAAAGCTA TGGACCCGAT GAAGTTGAAT CAACTGAAGC 181 AATTCGTTGA ACAGTGCAAA TCCAATCCTT CCATTCTCTC CGATCCTTCT CTTTCATTTT 241 TCCGTGACTA CATTGAGAAT CTCGGTGCTA AACTTCCTCC GGCTGCTTAC GACACCGGCG 301 ATTACAAAGA GAAGTCCCAT GCGGTGGATG CGAGTGATGA TGAGATGGAT GATGATGAGA 361 ATGATGCTAA TATCAAAGAG ACAGTTGAAG AAGAGGAGGA GCCTGAGATA ATTGAATCTG 421 ATATTGAGCT TGATGAGAGT GACACTGTGG AACCTGACAA TGATGAGCCA CAGAAGATGG 481 GAGACCCTTC TGTGGAGGTG ACTGAAGAAA GCCGCGATGC TTCTCAGGAG TCCAAAGCTG 541 AGGCCATGGA AGCAATTTCT GAAGGTTAGT TAGAAGATGC AATTGAGCAT CTTACGAAAG 601 CAGATCTCCT CAATCCTAAA TCAGCAATTA TGTATGCTAC Predicted gene structure (within gDNA segment 28031 to 31548): Exon 1 28631 28889 ( 259 n); cDNA 1 259 ( 259 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 260 311 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 312 476 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 4 30678 30765 ( 88 n); cDNA 477 564 ( 88 n); score: 0.989 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 0.98), Pa: 0.997 (s: 0.94) Exon 5 30863 30938 ( 76 n); cDNA 565 640 ( 76 n); score: 0.961 MATCH C08HBa0060C12.1+ SGN-E305050+ 0.994 640 1.000 C PGS_C08HBa0060C12.1+_SGN-E305050+ (28631 28889,29064 29115,30424 30588,30678 30765,30863 30938) Alignment (genomic DNA sequence = upper lines): AGTAATAGAA GCTACTAGAA GAACCTAGTC AGCTCCAGTC CCCTTCCATT TTCCTCGCCT 28690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAATAGAA GCTACTAGAA GAACCTAGTC AGCTCCAGTC CCCTTCCATT TTCCTCGCCT 60 CACTACCAAA AGCTAGGGTT TACAGTTTCT ACAATTTCAA AATTTTTTGA ATCTGTAGTA 28750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTACCAAA AGCTAGGGTT TACAGTTTCT ACAATTTCAA AATTTTTTGA ATCTGTAGTA 120 ATCGTATTTG AAGGTAATCG GAAAAAGCTA TGGACCCGAT GAAGTTGAAT CAACTGAAGC 28810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTATTTG AAGGTAATCG GAAAAAGCTA TGGACCCGAT GAAGTTGAAT CAACTGAAGC 180 AATTCGTTGA ACAGTGCAAA TCCAATCCTT CCATTCTCTC CGATCCTTCT CTTTCATTTT 28870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCGTTGA ACAGTGCAAA TCCAATCCTT CCATTCTCTC CGATCCTTCT CTTTCATTTT 240 TCCGTGACTA CATTGAGAAG TAAGTACGCT GTTTAATTCC ATTTGAGAAC AGTATTTTTT 28930 |||||||||| ||||||||| TCCGTGACTA CATTGAGAA. .......... .......... .......... .......... 259 GTTTTTTTCC ATGATCTTAT GCTATTATGA ACATATGAAT GGATGATGGA TCGCTACTTT 28990 .......... .......... .......... .......... .......... .......... 259 GCTTTCAGTT ACTGTAGTTT TGGATGAGTG AACTTAATGT CGATTCATTT GTTTGATTTT 29050 .......... .......... .......... .......... .......... .......... 259 TTTGTTTTTG CAGTCTCGGT GCTAAACTTC CTCCGGCTGC TTACGACACC GGCGATTACA 29110 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...TCTCGGT GCTAAACTTC CTCCGGCTGC TTACGACACC GGCGATTACA 306 AAGAGGTATT TTCCTTGCTT CATTATCTTC TTACTTAGAA TTAGTGTGAT GTAATGGTCA 29170 ||||| AAGAG..... .......... .......... .......... .......... .......... 311 ATGACGTGGG TTGAAAATAA TGAGGGTCTG AGGTTCAAAT CCCAGCACAA TTAAAAAATA 29230 .......... .......... .......... .......... .......... .......... 311 CTAGTTGATT TCTTCCCCAT TAGTTACCTT GTACTTGTTG GTGATTTCTT CCCCCATTAG 29290 .......... .......... .......... .......... .......... .......... 311 TTACCTTGTA CTTGTTGCGG GTGGGAGGTG GCTTGTAGCT CGTGGAATTA GTCTGAGGTG 29350 .......... .......... .......... .......... .......... .......... 311 AGGGCAAGTT GGTTTGGACA CCACGGTTGA AAATAAGTAA ATAAAAGATT ATTGTTTCTG 29410 .......... .......... .......... .......... .......... .......... 311 ATGAGTAAAG TTACTGTACA ATCACCAATA GGGAATCTTA ATATAATTAA CCGGAAGTTT 29470 .......... .......... .......... .......... .......... .......... 311 ATTATTGTTA AAACTAATAA AAGAAACGCT CAAATCACTA TATATATATA TATATATATA 29530 .......... .......... .......... .......... .......... .......... 311 TATATATATA TATATATATA TATATACCAG GGATGTCTCT TATTTATGTC TAACGACTAC 29590 .......... .......... .......... .......... .......... .......... 311 TCATGTGATT TGGAATAGAG TTAGGGTATT AAAATTCTTC TAGGTCAAAG ATTAAAGAGC 29650 .......... .......... .......... .......... .......... .......... 311 TTCATTTAAT ATCATCTATG AATATACACT AGGTTGCACA AAAAAGTTGT TCTTGGATCA 29710 .......... .......... .......... .......... .......... .......... 311 ATCCAAAGCC CAACCTCCTC GGGTTCGAGG CCTAGGTATG GAAAAATCCT TGGCAGGAGC 29770 .......... .......... .......... .......... .......... .......... 311 ACTAACCCTG AATGGGAACC TACTCAGCAC GAATACGGAT TAGTCGGACT CCAATGTGTG 29830 .......... .......... .......... .......... .......... .......... 311 TACCGGACAC TAGATGGGAA ACAGCTCCCC CTCCAACCCC CAACACCCAC CCCCAAAAAA 29890 .......... .......... .......... .......... .......... .......... 311 AGGATCGATG ACTCTTAAAA TCGTGTGTTT GGATATTTGG ATACTACTGA ACATGTCCAA 29950 .......... .......... .......... .......... .......... .......... 311 TTATTTTTCC GAACAATTTA GTCCTATCAT ATGAAAGCAA GTTGTTTAAA AAATTCTGCG 30010 .......... .......... .......... .......... .......... .......... 311 GTCTCAAGGA ATTAAGAATT AGTATATTAT AGAAGCAAGA GATTCAAAAT GGTTGGGAAG 30070 .......... .......... .......... .......... .......... .......... 311 TAATGCTCAG TTGTTAGACT TATTTAGCTC CACATAGGCA AGTGTGAGGT TTATTAAACT 30130 .......... .......... .......... .......... .......... .......... 311 TCTGATATGC CTTGGAAGGC AAATTACTGA CTGTTACTGC AGTAAAATGG GGTTGAATAG 30190 .......... .......... .......... .......... .......... .......... 311 ACTGAATATC TTTAGATGCA GAACACAACT AGCATGGGGT TGAGATGCAG ATGATTCATC 30250 .......... .......... .......... .......... .......... .......... 311 AACTGATCTG ATTATGGGTT TCCTTAAATT ACCTGCATGT TTCAACTTTA TATGGTTTCT 30310 .......... .......... .......... .......... .......... .......... 311 TTAGTTACTG TATTAGTATA CTCCGTGGTT TCTCATTAAA TATGAGGTAA TCGGAAAGTT 30370 .......... .......... .......... .......... .......... .......... 311 ATACACCCCT CCCTGGATTT TTATTGTCTA TTGATCTAAC GTTTTCTATG CAGAAGTCCC 30430 ||||||| .......... .......... .......... .......... .......... ...AAGTCCC 318 ATGCGGTGGA TGCGAGTGAT GATGAGATGG ATGATGATGA GAATGATGCT AATATCAAAG 30490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCGGTGGA TGCGAGTGAT GATGAGATGG ATGATGATGA GAATGATGCT AATATCAAAG 378 AGACAGTTGA AGAAGAGGAG GAGCCTGAGA TAATTGAATC TGATATTGAG CTTGATGAGA 30550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAGTTGA AGAAGAGGAG GAGCCTGAGA TAATTGAATC TGATATTGAG CTTGATGAGA 438 GTGACACTGT GGAACCTGAC AATGATGAGC CACAGAAGGT TTGCCATCCG ACTTATTTGA 30610 |||||||||| |||||||||| |||||||||| |||||||| GTGACACTGT GGAACCTGAC AATGATGAGC CACAGAAG.. .......... .......... 476 CATTTTTTCT GTTTTGGATT TTGAAGGTTC ATGTTTATTT TTAACATTTC AAATCTGTTT 30670 .......... .......... .......... .......... .......... .......... 476 TTTCTAGATG GGAGACCCTT CTGTGGAGGT GACTGAAGAA AGCCGTGATG CTTCTCAGGA 30730 ||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| .......ATG GGAGACCCTT CTGTGGAGGT GACTGAAGAA AGCCGCGATG CTTCTCAGGA 529 GTCCAAAGCT GAGGCCATGG AAGCAATTTC TGAAGGTGAC GTTGTTCAAT GCCTATATAT 30790 |||||||||| |||||||||| |||||||||| ||||| GTCCAAAGCT GAGGCCATGG AAGCAATTTC TGAAG..... .......... .......... 564 TGGCATGCCT GTCTTCATGT TTGCAAAATC AGTGGCATGA TCCCTCTCAC TTTTGTTGTT 30850 .......... .......... .......... .......... .......... .......... 564 GGTGTTCATC AGGTAAGTTA GAAGATGCAA TTGAGCATCT TACGAAGGCA GTTCTCCTCA 30910 || ||||| |||||||||| |||||||||| |||||| ||| | |||||||| .......... ..GTTAGTTA GAAGATGCAA TTGAGCATCT TACGAAAGCA GATCTCCTCA 612 ATCCTAAATC AGCAATTATG TATGCTAC 30938 |||||||||| |||||||||| |||||||| ATCCTAAATC AGCAATTATG TATGCTAC 640 hqPGS_C08HBa0060C12.1+_SGN-E305050+ (28631 28889,29064 29115,30424 30588,30678 30765,30863 30938) ******************************************************************************** EST sequence 242 +strand 592 n (File: SGN-E333897+) 1 CTCGTGCGCA CGAGGGAAGA ACCTAGTCAG CTCCAGTCCC CTTCCATTTT CCTCGCCTCA 61 CTACCAAAAG CTAGGGTTTA CAGTTTCTAC AATTTCAAAA TTTTTTGAAT CTGTAGTAAT 121 CGTATTTGAA GGTAATCGGA AAAAGCTATG GACCCGATGA AGTTGAATCA ACTGAAGCAA 181 TTCGTTGAAC AGTGCAAATC CAATCCTTCC ATTCTCTCCG ATCCTTCTCT TTCATTTTTC 241 CGTGACTACA TTGAGAATCT CGGTGCTAAA CTTCCTCCGG CTGCTTACGA CACCGGCGAT 301 TACAAAGAGA AGTCCCATGC GGTGGATGCG AGTGATGATG AGATGGATGA TGATGAGAAT 361 GATGCTAATA TCAAAGAGAC AGTTGAAGAA GAGGAGGAGC CTGAGATAAT TGAATCTGAT 421 ATTGAGCTTG ATGAGAGTGA CACTGTGGAA CCTGACAATG ATGAGCCACA GAAGATGGGA 481 GACCCTTCTG TGGAGGTGAC TGAAGAAAGC CGTGATGCTT CTCAGGAGTC CAAAGCTGAG 541 GCCATGGAAG CAATTTCTGA AGGTAAGTTA GAAGATGCAA TTGAGCATCT TA Predicted gene structure (within gDNA segment 27898 to 31502): Exon 1 28649 28889 ( 241 n); cDNA 17 257 ( 241 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 258 309 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 310 474 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 475 562 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 0) Exon 5 30863 30892 ( 30 n); cDNA 563 592 ( 30 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E333897+ 1.000 576 0.973 C PGS_C08HBa0060C12.1+_SGN-E333897+ (28649 28889,29064 29115,30424 30588,30678 30765,30863 30892) Alignment (genomic DNA sequence = upper lines): AAGAACCTAG TCAGCTCCAG TCCCCTTCCA TTTTCCTCGC CTCACTACCA AAAGCTAGGG 28708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACCTAG TCAGCTCCAG TCCCCTTCCA TTTTCCTCGC CTCACTACCA AAAGCTAGGG 76 TTTACAGTTT CTACAATTTC AAAATTTTTT GAATCTGTAG TAATCGTATT TGAAGGTAAT 28768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAGTTT CTACAATTTC AAAATTTTTT GAATCTGTAG TAATCGTATT TGAAGGTAAT 136 CGGAAAAAGC TATGGACCCG ATGAAGTTGA ATCAACTGAA GCAATTCGTT GAACAGTGCA 28828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAAAAGC TATGGACCCG ATGAAGTTGA ATCAACTGAA GCAATTCGTT GAACAGTGCA 196 AATCCAATCC TTCCATTCTC TCCGATCCTT CTCTTTCATT TTTCCGTGAC TACATTGAGA 28888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCAATCC TTCCATTCTC TCCGATCCTT CTCTTTCATT TTTCCGTGAC TACATTGAGA 256 AGTAAGTACG CTGTTTAATT CCATTTGAGA ACAGTATTTT TTGTTTTTTT CCATGATCTT 28948 | A......... .......... .......... .......... .......... .......... 257 ATGCTATTAT GAACATATGA ATGGATGATG GATCGCTACT TTGCTTTCAG TTACTGTAGT 29008 .......... .......... .......... .......... .......... .......... 257 TTTGGATGAG TGAACTTAAT GTCGATTCAT TTGTTTGATT TTTTTGTTTT TGCAGTCTCG 29068 ||||| .......... .......... .......... .......... .......... .....TCTCG 262 GTGCTAAACT TCCTCCGGCT GCTTACGACA CCGGCGATTA CAAAGAGGTA TTTTCCTTGC 29128 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTGCTAAACT TCCTCCGGCT GCTTACGACA CCGGCGATTA CAAAGAG... .......... 309 TTCATTATCT TCTTACTTAG AATTAGTGTG ATGTAATGGT CAATGACGTG GGTTGAAAAT 29188 .......... .......... .......... .......... .......... .......... 309 AATGAGGGTC TGAGGTTCAA ATCCCAGCAC AATTAAAAAA TACTAGTTGA TTTCTTCCCC 29248 .......... .......... .......... .......... .......... .......... 309 ATTAGTTACC TTGTACTTGT TGGTGATTTC TTCCCCCATT AGTTACCTTG TACTTGTTGC 29308 .......... .......... .......... .......... .......... .......... 309 GGGTGGGAGG TGGCTTGTAG CTCGTGGAAT TAGTCTGAGG TGAGGGCAAG TTGGTTTGGA 29368 .......... .......... .......... .......... .......... .......... 309 CACCACGGTT GAAAATAAGT AAATAAAAGA TTATTGTTTC TGATGAGTAA AGTTACTGTA 29428 .......... .......... .......... .......... .......... .......... 309 CAATCACCAA TAGGGAATCT TAATATAATT AACCGGAAGT TTATTATTGT TAAAACTAAT 29488 .......... .......... .......... .......... .......... .......... 309 AAAAGAAACG CTCAAATCAC TATATATATA TATATATATA TATATATATA TATATATATA 29548 .......... .......... .......... .......... .......... .......... 309 TATATATACC AGGGATGTCT CTTATTTATG TCTAACGACT ACTCATGTGA TTTGGAATAG 29608 .......... .......... .......... .......... .......... .......... 309 AGTTAGGGTA TTAAAATTCT TCTAGGTCAA AGATTAAAGA GCTTCATTTA ATATCATCTA 29668 .......... .......... .......... .......... .......... .......... 309 TGAATATACA CTAGGTTGCA CAAAAAAGTT GTTCTTGGAT CAATCCAAAG CCCAACCTCC 29728 .......... .......... .......... .......... .......... .......... 309 TCGGGTTCGA GGCCTAGGTA TGGAAAAATC CTTGGCAGGA GCACTAACCC TGAATGGGAA 29788 .......... .......... .......... .......... .......... .......... 309 CCTACTCAGC ACGAATACGG ATTAGTCGGA CTCCAATGTG TGTACCGGAC ACTAGATGGG 29848 .......... .......... .......... .......... .......... .......... 309 AAACAGCTCC CCCTCCAACC CCCAACACCC ACCCCCAAAA AAAGGATCGA TGACTCTTAA 29908 .......... .......... .......... .......... .......... .......... 309 AATCGTGTGT TTGGATATTT GGATACTACT GAACATGTCC AATTATTTTT CCGAACAATT 29968 .......... .......... .......... .......... .......... .......... 309 TAGTCCTATC ATATGAAAGC AAGTTGTTTA AAAAATTCTG CGGTCTCAAG GAATTAAGAA 30028 .......... .......... .......... .......... .......... .......... 309 TTAGTATATT ATAGAAGCAA GAGATTCAAA ATGGTTGGGA AGTAATGCTC AGTTGTTAGA 30088 .......... .......... .......... .......... .......... .......... 309 CTTATTTAGC TCCACATAGG CAAGTGTGAG GTTTATTAAA CTTCTGATAT GCCTTGGAAG 30148 .......... .......... .......... .......... .......... .......... 309 GCAAATTACT GACTGTTACT GCAGTAAAAT GGGGTTGAAT AGACTGAATA TCTTTAGATG 30208 .......... .......... .......... .......... .......... .......... 309 CAGAACACAA CTAGCATGGG GTTGAGATGC AGATGATTCA TCAACTGATC TGATTATGGG 30268 .......... .......... .......... .......... .......... .......... 309 TTTCCTTAAA TTACCTGCAT GTTTCAACTT TATATGGTTT CTTTAGTTAC TGTATTAGTA 30328 .......... .......... .......... .......... .......... .......... 309 TACTCCGTGG TTTCTCATTA AATATGAGGT AATCGGAAAG TTATACACCC CTCCCTGGAT 30388 .......... .......... .......... .......... .......... .......... 309 TTTTATTGTC TATTGATCTA ACGTTTTCTA TGCAGAAGTC CCATGCGGTG GATGCGAGTG 30448 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAGTC CCATGCGGTG GATGCGAGTG 334 ATGATGAGAT GGATGATGAT GAGAATGATG CTAATATCAA AGAGACAGTT GAAGAAGAGG 30508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGAGAT GGATGATGAT GAGAATGATG CTAATATCAA AGAGACAGTT GAAGAAGAGG 394 AGGAGCCTGA GATAATTGAA TCTGATATTG AGCTTGATGA GAGTGACACT GTGGAACCTG 30568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGCCTGA GATAATTGAA TCTGATATTG AGCTTGATGA GAGTGACACT GTGGAACCTG 454 ACAATGATGA GCCACAGAAG GTTTGCCATC CGACTTATTT GACATTTTTT CTGTTTTGGA 30628 |||||||||| |||||||||| ACAATGATGA GCCACAGAAG .......... .......... .......... .......... 474 TTTTGAAGGT TCATGTTTAT TTTTAACATT TCAAATCTGT TTTTTCTAGA TGGGAGACCC 30688 | |||||||||| .......... .......... .......... .......... .........A TGGGAGACCC 485 TTCTGTGGAG GTGACTGAAG AAAGCCGTGA TGCTTCTCAG GAGTCCAAAG CTGAGGCCAT 30748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTGGAG GTGACTGAAG AAAGCCGTGA TGCTTCTCAG GAGTCCAAAG CTGAGGCCAT 545 GGAAGCAATT TCTGAAGGTG ACGTTGTTCA ATGCCTATAT ATTGGCATGC CTGTCTTCAT 30808 |||||||||| ||||||| GGAAGCAATT TCTGAAG... .......... .......... .......... .......... 562 GTTTGCAAAA TCAGTGGCAT GATCCCTCTC ACTTTTGTTG TTGGTGTTCA TCAGGTAAGT 30868 |||||| .......... .......... .......... .......... .......... ....GTAAGT 568 TAGAAGATGC AATTGAGCAT CTTA 30892 |||||||||| |||||||||| |||| TAGAAGATGC AATTGAGCAT CTTA 592 hqPGS_C08HBa0060C12.1+_SGN-E333897+ (28649 28889,29064 29115,30424 30588,30678 30765,30863 30892) ******************************************************************************** EST sequence 229 +strand 677 n (File: SGN-E345662+) 1 CCTAGTCAGC TCCAGTCCCC TTCCATTTTC CTCGCCTCAC TACCAAAAGC TAGGGTTTAC 61 AGTTTCTACA ATTTCAAAAT TTTTTGAATC TGTAGTAATC GTATTTGAAG GTAATCGGAA 121 AAAGCTATGG ACCCGATGAA GTTGAATCAA CTGAAGCAAT TCGTTGAACA GTGCAAATCC 181 AATCCTTCCA TTCTCTCCGA TCCTTCTCTT TCATTTTTCC GTGACTACAT TGAGAATCTC 241 GGTGCTAAAC TTCCTCCGGC TGCTTACGAC ACCGGCGATT ACAAAGAGAA GTCCCATGCG 301 GTGGATGCGA GTGATGATGA GATGGATGAT GATGAGAATG ATGCTAATAT CAAAGAGACA 361 GTTGAAGAAG AGGAGGAGCC TGAGATAATT GAATCTGATA TTGAGCTTGA TGAGAGTGAC 421 ACTGTGGAAC CTGACAATGA TGAGCCACAG AAGATGGGAG ACCCTTCTGT GGAGGTGACT 481 GAAGAAAGCC GTGATGCTTC TCANGAGTCC AAAGCTGAGG CCATGGAAGC AATTTCTGAA 541 GGTAAGTTAG AAGATGCAAT TGAGCATCTT ACAAAGGCAG TTCTCCTCAA TCCTAAATCA 601 GCAATTATGT ATGCTACTAG AGCCTAGTGT TTATATCAAG ATGAAGAAGC CAAACGCTGC 661 CATACGAGAT GCAACTG Predicted gene structure (within gDNA segment 28054 to 31717): Exon 1 28654 28889 ( 236 n); cDNA 1 236 ( 236 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 237 288 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 289 453 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 454 541 ( 88 n); score: 0.989 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 0.98), Pa: 0.997 (s: 0.98) Exon 5 30863 30943 ( 81 n); cDNA 542 622 ( 81 n); score: 0.988 Intron 5 30944 31053 ( 110 n); Pd: 1.000 (s: 0.98), Pa: 1.000 (s: 0.95) Exon 6 31054 31107 ( 54 n); cDNA 623 677 ( 55 n); score: 0.954 MATCH C08HBa0060C12.1+ SGN-E345662+ 0.993 676 0.999 C PGS_C08HBa0060C12.1+_SGN-E345662+ (28654 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31107) Alignment (genomic DNA sequence = upper lines): CCTAGTCAGC TCCAGTCCCC TTCCATTTTC CTCGCCTCAC TACCAAAAGC TAGGGTTTAC 28713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAGTCAGC TCCAGTCCCC TTCCATTTTC CTCGCCTCAC TACCAAAAGC TAGGGTTTAC 60 AGTTTCTACA ATTTCAAAAT TTTTTGAATC TGTAGTAATC GTATTTGAAG GTAATCGGAA 28773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTCTACA ATTTCAAAAT TTTTTGAATC TGTAGTAATC GTATTTGAAG GTAATCGGAA 120 AAAGCTATGG ACCCGATGAA GTTGAATCAA CTGAAGCAAT TCGTTGAACA GTGCAAATCC 28833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTATGG ACCCGATGAA GTTGAATCAA CTGAAGCAAT TCGTTGAACA GTGCAAATCC 180 AATCCTTCCA TTCTCTCCGA TCCTTCTCTT TCATTTTTCC GTGACTACAT TGAGAAGTAA 28893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATCCTTCCA TTCTCTCCGA TCCTTCTCTT TCATTTTTCC GTGACTACAT TGAGAA.... 236 GTACGCTGTT TAATTCCATT TGAGAACAGT ATTTTTTGTT TTTTTCCATG ATCTTATGCT 28953 .......... .......... .......... .......... .......... .......... 236 ATTATGAACA TATGAATGGA TGATGGATCG CTACTTTGCT TTCAGTTACT GTAGTTTTGG 29013 .......... .......... .......... .......... .......... .......... 236 ATGAGTGAAC TTAATGTCGA TTCATTTGTT TGATTTTTTT GTTTTTGCAG TCTCGGTGCT 29073 |||||||||| .......... .......... .......... .......... .......... TCTCGGTGCT 246 AAACTTCCTC CGGCTGCTTA CGACACCGGC GATTACAAAG AGGTATTTTC CTTGCTTCAT 29133 |||||||||| |||||||||| |||||||||| |||||||||| || AAACTTCCTC CGGCTGCTTA CGACACCGGC GATTACAAAG AG........ .......... 288 TATCTTCTTA CTTAGAATTA GTGTGATGTA ATGGTCAATG ACGTGGGTTG AAAATAATGA 29193 .......... .......... .......... .......... .......... .......... 288 GGGTCTGAGG TTCAAATCCC AGCACAATTA AAAAATACTA GTTGATTTCT TCCCCATTAG 29253 .......... .......... .......... .......... .......... .......... 288 TTACCTTGTA CTTGTTGGTG ATTTCTTCCC CCATTAGTTA CCTTGTACTT GTTGCGGGTG 29313 .......... .......... .......... .......... .......... .......... 288 GGAGGTGGCT TGTAGCTCGT GGAATTAGTC TGAGGTGAGG GCAAGTTGGT TTGGACACCA 29373 .......... .......... .......... .......... .......... .......... 288 CGGTTGAAAA TAAGTAAATA AAAGATTATT GTTTCTGATG AGTAAAGTTA CTGTACAATC 29433 .......... .......... .......... .......... .......... .......... 288 ACCAATAGGG AATCTTAATA TAATTAACCG GAAGTTTATT ATTGTTAAAA CTAATAAAAG 29493 .......... .......... .......... .......... .......... .......... 288 AAACGCTCAA ATCACTATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT 29553 .......... .......... .......... .......... .......... .......... 288 ATACCAGGGA TGTCTCTTAT TTATGTCTAA CGACTACTCA TGTGATTTGG AATAGAGTTA 29613 .......... .......... .......... .......... .......... .......... 288 GGGTATTAAA ATTCTTCTAG GTCAAAGATT AAAGAGCTTC ATTTAATATC ATCTATGAAT 29673 .......... .......... .......... .......... .......... .......... 288 ATACACTAGG TTGCACAAAA AAGTTGTTCT TGGATCAATC CAAAGCCCAA CCTCCTCGGG 29733 .......... .......... .......... .......... .......... .......... 288 TTCGAGGCCT AGGTATGGAA AAATCCTTGG CAGGAGCACT AACCCTGAAT GGGAACCTAC 29793 .......... .......... .......... .......... .......... .......... 288 TCAGCACGAA TACGGATTAG TCGGACTCCA ATGTGTGTAC CGGACACTAG ATGGGAAACA 29853 .......... .......... .......... .......... .......... .......... 288 GCTCCCCCTC CAACCCCCAA CACCCACCCC CAAAAAAAGG ATCGATGACT CTTAAAATCG 29913 .......... .......... .......... .......... .......... .......... 288 TGTGTTTGGA TATTTGGATA CTACTGAACA TGTCCAATTA TTTTTCCGAA CAATTTAGTC 29973 .......... .......... .......... .......... .......... .......... 288 CTATCATATG AAAGCAAGTT GTTTAAAAAA TTCTGCGGTC TCAAGGAATT AAGAATTAGT 30033 .......... .......... .......... .......... .......... .......... 288 ATATTATAGA AGCAAGAGAT TCAAAATGGT TGGGAAGTAA TGCTCAGTTG TTAGACTTAT 30093 .......... .......... .......... .......... .......... .......... 288 TTAGCTCCAC ATAGGCAAGT GTGAGGTTTA TTAAACTTCT GATATGCCTT GGAAGGCAAA 30153 .......... .......... .......... .......... .......... .......... 288 TTACTGACTG TTACTGCAGT AAAATGGGGT TGAATAGACT GAATATCTTT AGATGCAGAA 30213 .......... .......... .......... .......... .......... .......... 288 CACAACTAGC ATGGGGTTGA GATGCAGATG ATTCATCAAC TGATCTGATT ATGGGTTTCC 30273 .......... .......... .......... .......... .......... .......... 288 TTAAATTACC TGCATGTTTC AACTTTATAT GGTTTCTTTA GTTACTGTAT TAGTATACTC 30333 .......... .......... .......... .......... .......... .......... 288 CGTGGTTTCT CATTAAATAT GAGGTAATCG GAAAGTTATA CACCCCTCCC TGGATTTTTA 30393 .......... .......... .......... .......... .......... .......... 288 TTGTCTATTG ATCTAACGTT TTCTATGCAG AAGTCCCATG CGGTGGATGC GAGTGATGAT 30453 |||||||||| |||||||||| |||||||||| .......... .......... .......... AAGTCCCATG CGGTGGATGC GAGTGATGAT 318 GAGATGGATG ATGATGAGAA TGATGCTAAT ATCAAAGAGA CAGTTGAAGA AGAGGAGGAG 30513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGGATG ATGATGAGAA TGATGCTAAT ATCAAAGAGA CAGTTGAAGA AGAGGAGGAG 378 CCTGAGATAA TTGAATCTGA TATTGAGCTT GATGAGAGTG ACACTGTGGA ACCTGACAAT 30573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGAGATAA TTGAATCTGA TATTGAGCTT GATGAGAGTG ACACTGTGGA ACCTGACAAT 438 GATGAGCCAC AGAAGGTTTG CCATCCGACT TATTTGACAT TTTTTCTGTT TTGGATTTTG 30633 |||||||||| ||||| GATGAGCCAC AGAAG..... .......... .......... .......... .......... 453 AAGGTTCATG TTTATTTTTA ACATTTCAAA TCTGTTTTTT CTAGATGGGA GACCCTTCTG 30693 |||||| |||||||||| .......... .......... .......... .......... ....ATGGGA GACCCTTCTG 469 TGGAGGTGAC TGAAGAAAGC CGTGATGCTT CTCAGGAGTC CAAAGCTGAG GCCATGGAAG 30753 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TGGAGGTGAC TGAAGAAAGC CGTGATGCTT CTCANGAGTC CAAAGCTGAG GCCATGGAAG 529 CAATTTCTGA AGGTGACGTT GTTCAATGCC TATATATTGG CATGCCTGTC TTCATGTTTG 30813 |||||||||| || CAATTTCTGA AG........ .......... .......... .......... .......... 541 CAAAATCAGT GGCATGATCC CTCTCACTTT TGTTGTTGGT GTTCATCAGG TAAGTTAGAA 30873 | |||||||||| .......... .......... .......... .......... .........G TAAGTTAGAA 552 GATGCAATTG AGCATCTTAC GAAGGCAGTT CTCCTCAATC CTAAATCAGC AATTATGTAT 30933 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GATGCAATTG AGCATCTTAC AAAGGCAGTT CTCCTCAATC CTAAATCAGC AATTATGTAT 612 GCTACTAGAG GTACGTTTAC CAAATGCTTT CAAAGTGGAT TTATTGATGT TGTTTTTTTT 30993 |||||||||| GCTACTAGAG .......... .......... .......... .......... .......... 622 GTAATTAGAG TATTCATTTG CATTCAATGA ATCACTGTTT TTTCTTTTTG TCTTACACAG 31053 .......... .......... .......... .......... .......... .......... 622 -CTAGTGTTT ATATCAAGAT GAAGAAGCCA AACGCTGCCA TACGAGATGC AACTG 31107 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CCTAGTGTTT ATATCAAGAT GAAGAAGCCA AACGCTGCCA TACGAGATGC AACTG 677 hqPGS_C08HBa0060C12.1+_SGN-E345662+ (28654 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31107) ******************************************************************************** EST sequence 61 +strand 460 n (File: SGN-E339491+) 1 CCTAGTCAGC TCCAGTCCCC TTCCATTTTC CTCGCCTCAC TACCAAAAGC TAGGGTTTAC 61 AGTTTCTACA ATTTCAAAAT TTTTTGAATC TGTAGTAATC GTATTTGAAG GTAATCGGAA 121 AAAGCTATGG ACCCGATGAA GTTGAATCAA CTGAAGCAAT TCGTTGAACA GTGCAAATCC 181 AATCCTTCCA TTCTCTCCGA TCCTTCTCTT TCATTTTTCC GTGACTACAT TGAGAATCTC 241 GGTGCTAAAC TTCCTCCGGC TGCTTACGAC ACCGGCGATT ACAAAGAGAA GTCCCATGCG 301 GTGGATGCGA GTGATGATGA GATGGATGAT GATGAGAATG ATGCTAATAT CAAAGAGACA 361 GTTGAAGAAG AGGAGGAGCC TGAGATAATT GAATCTGATA TTGAGCTTGA TGAGAGTGAC 421 ACTGTGGAAC CTGACAATGA TGAGCCACAG AAGATGGGAG Predicted gene structure (within gDNA segment 28054 to 31268): Exon 1 28654 28889 ( 236 n); cDNA 1 236 ( 236 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 237 288 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 289 453 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 0) Exon 4 30678 30684 ( 7 n); cDNA 454 460 ( 7 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E339491+ 1.000 460 1.000 C PGS_C08HBa0060C12.1+_SGN-E339491+ (28654 28889,29064 29115,30424 30588,30678 30684) Alignment (genomic DNA sequence = upper lines): CCTAGTCAGC TCCAGTCCCC TTCCATTTTC CTCGCCTCAC TACCAAAAGC TAGGGTTTAC 28713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAGTCAGC TCCAGTCCCC TTCCATTTTC CTCGCCTCAC TACCAAAAGC TAGGGTTTAC 60 AGTTTCTACA ATTTCAAAAT TTTTTGAATC TGTAGTAATC GTATTTGAAG GTAATCGGAA 28773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTCTACA ATTTCAAAAT TTTTTGAATC TGTAGTAATC GTATTTGAAG GTAATCGGAA 120 AAAGCTATGG ACCCGATGAA GTTGAATCAA CTGAAGCAAT TCGTTGAACA GTGCAAATCC 28833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTATGG ACCCGATGAA GTTGAATCAA CTGAAGCAAT TCGTTGAACA GTGCAAATCC 180 AATCCTTCCA TTCTCTCCGA TCCTTCTCTT TCATTTTTCC GTGACTACAT TGAGAAGTAA 28893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATCCTTCCA TTCTCTCCGA TCCTTCTCTT TCATTTTTCC GTGACTACAT TGAGAA.... 236 GTACGCTGTT TAATTCCATT TGAGAACAGT ATTTTTTGTT TTTTTCCATG ATCTTATGCT 28953 .......... .......... .......... .......... .......... .......... 236 ATTATGAACA TATGAATGGA TGATGGATCG CTACTTTGCT TTCAGTTACT GTAGTTTTGG 29013 .......... .......... .......... .......... .......... .......... 236 ATGAGTGAAC TTAATGTCGA TTCATTTGTT TGATTTTTTT GTTTTTGCAG TCTCGGTGCT 29073 |||||||||| .......... .......... .......... .......... .......... TCTCGGTGCT 246 AAACTTCCTC CGGCTGCTTA CGACACCGGC GATTACAAAG AGGTATTTTC CTTGCTTCAT 29133 |||||||||| |||||||||| |||||||||| |||||||||| || AAACTTCCTC CGGCTGCTTA CGACACCGGC GATTACAAAG AG........ .......... 288 TATCTTCTTA CTTAGAATTA GTGTGATGTA ATGGTCAATG ACGTGGGTTG AAAATAATGA 29193 .......... .......... .......... .......... .......... .......... 288 GGGTCTGAGG TTCAAATCCC AGCACAATTA AAAAATACTA GTTGATTTCT TCCCCATTAG 29253 .......... .......... .......... .......... .......... .......... 288 TTACCTTGTA CTTGTTGGTG ATTTCTTCCC CCATTAGTTA CCTTGTACTT GTTGCGGGTG 29313 .......... .......... .......... .......... .......... .......... 288 GGAGGTGGCT TGTAGCTCGT GGAATTAGTC TGAGGTGAGG GCAAGTTGGT TTGGACACCA 29373 .......... .......... .......... .......... .......... .......... 288 CGGTTGAAAA TAAGTAAATA AAAGATTATT GTTTCTGATG AGTAAAGTTA CTGTACAATC 29433 .......... .......... .......... .......... .......... .......... 288 ACCAATAGGG AATCTTAATA TAATTAACCG GAAGTTTATT ATTGTTAAAA CTAATAAAAG 29493 .......... .......... .......... .......... .......... .......... 288 AAACGCTCAA ATCACTATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT 29553 .......... .......... .......... .......... .......... .......... 288 ATACCAGGGA TGTCTCTTAT TTATGTCTAA CGACTACTCA TGTGATTTGG AATAGAGTTA 29613 .......... .......... .......... .......... .......... .......... 288 GGGTATTAAA ATTCTTCTAG GTCAAAGATT AAAGAGCTTC ATTTAATATC ATCTATGAAT 29673 .......... .......... .......... .......... .......... .......... 288 ATACACTAGG TTGCACAAAA AAGTTGTTCT TGGATCAATC CAAAGCCCAA CCTCCTCGGG 29733 .......... .......... .......... .......... .......... .......... 288 TTCGAGGCCT AGGTATGGAA AAATCCTTGG CAGGAGCACT AACCCTGAAT GGGAACCTAC 29793 .......... .......... .......... .......... .......... .......... 288 TCAGCACGAA TACGGATTAG TCGGACTCCA ATGTGTGTAC CGGACACTAG ATGGGAAACA 29853 .......... .......... .......... .......... .......... .......... 288 GCTCCCCCTC CAACCCCCAA CACCCACCCC CAAAAAAAGG ATCGATGACT CTTAAAATCG 29913 .......... .......... .......... .......... .......... .......... 288 TGTGTTTGGA TATTTGGATA CTACTGAACA TGTCCAATTA TTTTTCCGAA CAATTTAGTC 29973 .......... .......... .......... .......... .......... .......... 288 CTATCATATG AAAGCAAGTT GTTTAAAAAA TTCTGCGGTC TCAAGGAATT AAGAATTAGT 30033 .......... .......... .......... .......... .......... .......... 288 ATATTATAGA AGCAAGAGAT TCAAAATGGT TGGGAAGTAA TGCTCAGTTG TTAGACTTAT 30093 .......... .......... .......... .......... .......... .......... 288 TTAGCTCCAC ATAGGCAAGT GTGAGGTTTA TTAAACTTCT GATATGCCTT GGAAGGCAAA 30153 .......... .......... .......... .......... .......... .......... 288 TTACTGACTG TTACTGCAGT AAAATGGGGT TGAATAGACT GAATATCTTT AGATGCAGAA 30213 .......... .......... .......... .......... .......... .......... 288 CACAACTAGC ATGGGGTTGA GATGCAGATG ATTCATCAAC TGATCTGATT ATGGGTTTCC 30273 .......... .......... .......... .......... .......... .......... 288 TTAAATTACC TGCATGTTTC AACTTTATAT GGTTTCTTTA GTTACTGTAT TAGTATACTC 30333 .......... .......... .......... .......... .......... .......... 288 CGTGGTTTCT CATTAAATAT GAGGTAATCG GAAAGTTATA CACCCCTCCC TGGATTTTTA 30393 .......... .......... .......... .......... .......... .......... 288 TTGTCTATTG ATCTAACGTT TTCTATGCAG AAGTCCCATG CGGTGGATGC GAGTGATGAT 30453 |||||||||| |||||||||| |||||||||| .......... .......... .......... AAGTCCCATG CGGTGGATGC GAGTGATGAT 318 GAGATGGATG ATGATGAGAA TGATGCTAAT ATCAAAGAGA CAGTTGAAGA AGAGGAGGAG 30513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGGATG ATGATGAGAA TGATGCTAAT ATCAAAGAGA CAGTTGAAGA AGAGGAGGAG 378 CCTGAGATAA TTGAATCTGA TATTGAGCTT GATGAGAGTG ACACTGTGGA ACCTGACAAT 30573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGAGATAA TTGAATCTGA TATTGAGCTT GATGAGAGTG ACACTGTGGA ACCTGACAAT 438 GATGAGCCAC AGAAGGTTTG CCATCCGACT TATTTGACAT TTTTTCTGTT TTGGATTTTG 30633 |||||||||| ||||| GATGAGCCAC AGAAG..... .......... .......... .......... .......... 453 AAGGTTCATG TTTATTTTTA ACATTTCAAA TCTGTTTTTT CTAGATGGGA G 30684 |||||| | .......... .......... .......... .......... ....ATGGGA G 460 hqPGS_C08HBa0060C12.1+_SGN-E339491+ (28654 28889,29064 29115,30424 30588,30678 30684) ******************************************************************************** EST sequence 31 +strand 449 n (File: SGN-E337901+) 1 TAGTCAGCTC CAGTCCCCTT CCATTTTCCT CGCCTCACTA CCAAAAGCTA GGGTTTACAG 61 TTTCTACAAT TTCAAAATTT TTTGAATCTG TAGTAATCGT ATTTGAAGGT AATCGGAAAA 121 AGCTATGGAC CCGATGAAGT TGAATCAACT GAAGCAATTC GTTGAACAGT GCAAATCCAA 181 TCCTTCCATT CTCTCCGATC CTTCTCTTTC ATTTTTCCGT GACTACATTG AGAATCTCGG 241 TGCTAAACTT CCTCCGGCTG CTTACGACAC CGGCGATTAC AAAGAGAAGT CCCATGCGGT 301 GGATGCGAGT GATGATGAGA TGGATGATGA TGAGAATGAT GCTAATATCA AAGAGACAGT 361 TGAAGAAGAG GAGGAGCCTG AGATAATTGA ATCTGATATT GAGCTTGATG AGAGTGACAC 421 TGTGGAACCT GACAATGATG AGCCACAGA Predicted gene structure (within gDNA segment 28056 to 31196): Exon 1 28656 28889 ( 234 n); cDNA 1 234 ( 234 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 235 286 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30586 ( 163 n); cDNA 287 449 ( 163 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E337901+ 1.000 449 1.000 C PGS_C08HBa0060C12.1+_SGN-E337901+ (28656 28889,29064 29115,30424 30586) Alignment (genomic DNA sequence = upper lines): TAGTCAGCTC CAGTCCCCTT CCATTTTCCT CGCCTCACTA CCAAAAGCTA GGGTTTACAG 28715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTCAGCTC CAGTCCCCTT CCATTTTCCT CGCCTCACTA CCAAAAGCTA GGGTTTACAG 60 TTTCTACAAT TTCAAAATTT TTTGAATCTG TAGTAATCGT ATTTGAAGGT AATCGGAAAA 28775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTACAAT TTCAAAATTT TTTGAATCTG TAGTAATCGT ATTTGAAGGT AATCGGAAAA 120 AGCTATGGAC CCGATGAAGT TGAATCAACT GAAGCAATTC GTTGAACAGT GCAAATCCAA 28835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTATGGAC CCGATGAAGT TGAATCAACT GAAGCAATTC GTTGAACAGT GCAAATCCAA 180 TCCTTCCATT CTCTCCGATC CTTCTCTTTC ATTTTTCCGT GACTACATTG AGAAGTAAGT 28895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TCCTTCCATT CTCTCCGATC CTTCTCTTTC ATTTTTCCGT GACTACATTG AGAA...... 234 ACGCTGTTTA ATTCCATTTG AGAACAGTAT TTTTTGTTTT TTTCCATGAT CTTATGCTAT 28955 .......... .......... .......... .......... .......... .......... 234 TATGAACATA TGAATGGATG ATGGATCGCT ACTTTGCTTT CAGTTACTGT AGTTTTGGAT 29015 .......... .......... .......... .......... .......... .......... 234 GAGTGAACTT AATGTCGATT CATTTGTTTG ATTTTTTTGT TTTTGCAGTC TCGGTGCTAA 29075 || |||||||||| .......... .......... .......... .......... ........TC TCGGTGCTAA 246 ACTTCCTCCG GCTGCTTACG ACACCGGCGA TTACAAAGAG GTATTTTCCT TGCTTCATTA 29135 |||||||||| |||||||||| |||||||||| |||||||||| ACTTCCTCCG GCTGCTTACG ACACCGGCGA TTACAAAGAG .......... .......... 286 TCTTCTTACT TAGAATTAGT GTGATGTAAT GGTCAATGAC GTGGGTTGAA AATAATGAGG 29195 .......... .......... .......... .......... .......... .......... 286 GTCTGAGGTT CAAATCCCAG CACAATTAAA AAATACTAGT TGATTTCTTC CCCATTAGTT 29255 .......... .......... .......... .......... .......... .......... 286 ACCTTGTACT TGTTGGTGAT TTCTTCCCCC ATTAGTTACC TTGTACTTGT TGCGGGTGGG 29315 .......... .......... .......... .......... .......... .......... 286 AGGTGGCTTG TAGCTCGTGG AATTAGTCTG AGGTGAGGGC AAGTTGGTTT GGACACCACG 29375 .......... .......... .......... .......... .......... .......... 286 GTTGAAAATA AGTAAATAAA AGATTATTGT TTCTGATGAG TAAAGTTACT GTACAATCAC 29435 .......... .......... .......... .......... .......... .......... 286 CAATAGGGAA TCTTAATATA ATTAACCGGA AGTTTATTAT TGTTAAAACT AATAAAAGAA 29495 .......... .......... .......... .......... .......... .......... 286 ACGCTCAAAT CACTATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT 29555 .......... .......... .......... .......... .......... .......... 286 ACCAGGGATG TCTCTTATTT ATGTCTAACG ACTACTCATG TGATTTGGAA TAGAGTTAGG 29615 .......... .......... .......... .......... .......... .......... 286 GTATTAAAAT TCTTCTAGGT CAAAGATTAA AGAGCTTCAT TTAATATCAT CTATGAATAT 29675 .......... .......... .......... .......... .......... .......... 286 ACACTAGGTT GCACAAAAAA GTTGTTCTTG GATCAATCCA AAGCCCAACC TCCTCGGGTT 29735 .......... .......... .......... .......... .......... .......... 286 CGAGGCCTAG GTATGGAAAA ATCCTTGGCA GGAGCACTAA CCCTGAATGG GAACCTACTC 29795 .......... .......... .......... .......... .......... .......... 286 AGCACGAATA CGGATTAGTC GGACTCCAAT GTGTGTACCG GACACTAGAT GGGAAACAGC 29855 .......... .......... .......... .......... .......... .......... 286 TCCCCCTCCA ACCCCCAACA CCCACCCCCA AAAAAAGGAT CGATGACTCT TAAAATCGTG 29915 .......... .......... .......... .......... .......... .......... 286 TGTTTGGATA TTTGGATACT ACTGAACATG TCCAATTATT TTTCCGAACA ATTTAGTCCT 29975 .......... .......... .......... .......... .......... .......... 286 ATCATATGAA AGCAAGTTGT TTAAAAAATT CTGCGGTCTC AAGGAATTAA GAATTAGTAT 30035 .......... .......... .......... .......... .......... .......... 286 ATTATAGAAG CAAGAGATTC AAAATGGTTG GGAAGTAATG CTCAGTTGTT AGACTTATTT 30095 .......... .......... .......... .......... .......... .......... 286 AGCTCCACAT AGGCAAGTGT GAGGTTTATT AAACTTCTGA TATGCCTTGG AAGGCAAATT 30155 .......... .......... .......... .......... .......... .......... 286 ACTGACTGTT ACTGCAGTAA AATGGGGTTG AATAGACTGA ATATCTTTAG ATGCAGAACA 30215 .......... .......... .......... .......... .......... .......... 286 CAACTAGCAT GGGGTTGAGA TGCAGATGAT TCATCAACTG ATCTGATTAT GGGTTTCCTT 30275 .......... .......... .......... .......... .......... .......... 286 AAATTACCTG CATGTTTCAA CTTTATATGG TTTCTTTAGT TACTGTATTA GTATACTCCG 30335 .......... .......... .......... .......... .......... .......... 286 TGGTTTCTCA TTAAATATGA GGTAATCGGA AAGTTATACA CCCCTCCCTG GATTTTTATT 30395 .......... .......... .......... .......... .......... .......... 286 GTCTATTGAT CTAACGTTTT CTATGCAGAA GTCCCATGCG GTGGATGCGA GTGATGATGA 30455 || |||||||||| |||||||||| |||||||||| .......... .......... ........AA GTCCCATGCG GTGGATGCGA GTGATGATGA 318 GATGGATGAT GATGAGAATG ATGCTAATAT CAAAGAGACA GTTGAAGAAG AGGAGGAGCC 30515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGATGAT GATGAGAATG ATGCTAATAT CAAAGAGACA GTTGAAGAAG AGGAGGAGCC 378 TGAGATAATT GAATCTGATA TTGAGCTTGA TGAGAGTGAC ACTGTGGAAC CTGACAATGA 30575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGATAATT GAATCTGATA TTGAGCTTGA TGAGAGTGAC ACTGTGGAAC CTGACAATGA 438 TGAGCCACAG A 30586 |||||||||| | TGAGCCACAG A 449 hqPGS_C08HBa0060C12.1+_SGN-E337901+ (28656 28889,29064 29115,30424 30586) ******************************************************************************** EST sequence 224 +strand 740 n (File: SGN-E333805+) 1 TCAGCTCCAG TCCCCTTCCA TTTTCCTCGC CTCACTACCA AAAGCTAGGG TTTACAGTTT 61 CTACAATTTC AAAATTTTTT GAATCTGTAG TAATCGTATT TGAAGGTAAT CGGAAAAAGC 121 TATGGACCCG ATGAAGTTGA ATCAACTGAA GCAATTCGTT GAACAGTGCA AATCCAATCC 181 TTCCATTCTC TCCGATCCTT CTCTTTCATT TTTCCGTGAC TACATTGAGA ATCTCGGTGC 241 TAAACTTCCT CCGGGCTGCT TACGACACCG GCGATTACAA AGAGAAGTCC CATGCGGTGG 301 ATGCGAGTGA TGATGAGATG GATGATGATG AGAATGATGC TAATATCAAA GAGACAGTTG 361 AAGAAGAGGA GGAGCCTGAG ATAATTGAAT CTGATATTGA GCTTGATGAG AGTGACACTG 421 TGGAACCTGA CAATGATGAG CCACAGAAGA TGGGAGACCC TTCTGTGGAG GTGACTGAAG 481 AAAGCCGTGA TGCTTCTCAG GAGTCCAAAG CTGAGGCCAT GGAAGCAATT TCTGAAGGTA 541 AGTTAGAAGA TGCAATTGAG CATCTTACGA AGGCAGTTCT CCTCAATCCT AAATCAGCAA 601 TTATGTATGC TACTAGAGCT AGTGTTTATA TCAAGATGAA GAAGCCAAAC GCTGCCATAC 661 GAGATGCAAC TGCAGCATTG GAGTTGAATC CAGATTCTGC TAAAGGTTAC AAATCTCGTG 721 GCATTGCCCA GAGCATGCTG Predicted gene structure (within gDNA segment 28059 to 32455): Exon 1 28659 28889 ( 231 n); cDNA 1 231 ( 231 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 0.95) Exon 2 29064 29115 ( 52 n); cDNA 232 284 ( 53 n); score: 0.952 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 0.95), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 285 449 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 450 537 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 30863 30943 ( 81 n); cDNA 538 618 ( 81 n); score: 1.000 Intron 5 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 31054 31118 ( 65 n); cDNA 619 683 ( 65 n); score: 1.000 Intron 6 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 0.95) Exon 7 31681 31737 ( 57 n); cDNA 684 740 ( 57 n); score: 0.939 MATCH C08HBa0060C12.1+ SGN-E333805+ 0.992 739 0.999 C PGS_C08HBa0060C12.1+_SGN-E333805+ (28659 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31737) Alignment (genomic DNA sequence = upper lines): TCAGCTCCAG TCCCCTTCCA TTTTCCTCGC CTCACTACCA AAAGCTAGGG TTTACAGTTT 28718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTCCAG TCCCCTTCCA TTTTCCTCGC CTCACTACCA AAAGCTAGGG TTTACAGTTT 60 CTACAATTTC AAAATTTTTT GAATCTGTAG TAATCGTATT TGAAGGTAAT CGGAAAAAGC 28778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACAATTTC AAAATTTTTT GAATCTGTAG TAATCGTATT TGAAGGTAAT CGGAAAAAGC 120 TATGGACCCG ATGAAGTTGA ATCAACTGAA GCAATTCGTT GAACAGTGCA AATCCAATCC 28838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGACCCG ATGAAGTTGA ATCAACTGAA GCAATTCGTT GAACAGTGCA AATCCAATCC 180 TTCCATTCTC TCCGATCCTT CTCTTTCATT TTTCCGTGAC TACATTGAGA AGTAAGTACG 28898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTCCATTCTC TCCGATCCTT CTCTTTCATT TTTCCGTGAC TACATTGAGA A......... 231 CTGTTTAATT CCATTTGAGA ACAGTATTTT TTGTTTTTTT CCATGATCTT ATGCTATTAT 28958 .......... .......... .......... .......... .......... .......... 231 GAACATATGA ATGGATGATG GATCGCTACT TTGCTTTCAG TTACTGTAGT TTTGGATGAG 29018 .......... .......... .......... .......... .......... .......... 231 TGAACTTAAT GTCGATTCAT TTGTTTGATT TTTTTGTTTT TGCAGTCTCG GTGCTAAACT 29078 ||||| |||||||||| .......... .......... .......... .......... .....TCTCG GTGCTAAACT 246 TCCTCC-GGC TGCTTACGAC ACCGGCGATT ACAAAGAGGT ATTTTCCTTG CTTCATTATC 29137 |||||| ||| |||||||||| |||||||||| |||||||| TCCTCCGGGC TGCTTACGAC ACCGGCGATT ACAAAGAG.. .......... .......... 284 TTCTTACTTA GAATTAGTGT GATGTAATGG TCAATGACGT GGGTTGAAAA TAATGAGGGT 29197 .......... .......... .......... .......... .......... .......... 284 CTGAGGTTCA AATCCCAGCA CAATTAAAAA ATACTAGTTG ATTTCTTCCC CATTAGTTAC 29257 .......... .......... .......... .......... .......... .......... 284 CTTGTACTTG TTGGTGATTT CTTCCCCCAT TAGTTACCTT GTACTTGTTG CGGGTGGGAG 29317 .......... .......... .......... .......... .......... .......... 284 GTGGCTTGTA GCTCGTGGAA TTAGTCTGAG GTGAGGGCAA GTTGGTTTGG ACACCACGGT 29377 .......... .......... .......... .......... .......... .......... 284 TGAAAATAAG TAAATAAAAG ATTATTGTTT CTGATGAGTA AAGTTACTGT ACAATCACCA 29437 .......... .......... .......... .......... .......... .......... 284 ATAGGGAATC TTAATATAAT TAACCGGAAG TTTATTATTG TTAAAACTAA TAAAAGAAAC 29497 .......... .......... .......... .......... .......... .......... 284 GCTCAAATCA CTATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAC 29557 .......... .......... .......... .......... .......... .......... 284 CAGGGATGTC TCTTATTTAT GTCTAACGAC TACTCATGTG ATTTGGAATA GAGTTAGGGT 29617 .......... .......... .......... .......... .......... .......... 284 ATTAAAATTC TTCTAGGTCA AAGATTAAAG AGCTTCATTT AATATCATCT ATGAATATAC 29677 .......... .......... .......... .......... .......... .......... 284 ACTAGGTTGC ACAAAAAAGT TGTTCTTGGA TCAATCCAAA GCCCAACCTC CTCGGGTTCG 29737 .......... .......... .......... .......... .......... .......... 284 AGGCCTAGGT ATGGAAAAAT CCTTGGCAGG AGCACTAACC CTGAATGGGA ACCTACTCAG 29797 .......... .......... .......... .......... .......... .......... 284 CACGAATACG GATTAGTCGG ACTCCAATGT GTGTACCGGA CACTAGATGG GAAACAGCTC 29857 .......... .......... .......... .......... .......... .......... 284 CCCCTCCAAC CCCCAACACC CACCCCCAAA AAAAGGATCG ATGACTCTTA AAATCGTGTG 29917 .......... .......... .......... .......... .......... .......... 284 TTTGGATATT TGGATACTAC TGAACATGTC CAATTATTTT TCCGAACAAT TTAGTCCTAT 29977 .......... .......... .......... .......... .......... .......... 284 CATATGAAAG CAAGTTGTTT AAAAAATTCT GCGGTCTCAA GGAATTAAGA ATTAGTATAT 30037 .......... .......... .......... .......... .......... .......... 284 TATAGAAGCA AGAGATTCAA AATGGTTGGG AAGTAATGCT CAGTTGTTAG ACTTATTTAG 30097 .......... .......... .......... .......... .......... .......... 284 CTCCACATAG GCAAGTGTGA GGTTTATTAA ACTTCTGATA TGCCTTGGAA GGCAAATTAC 30157 .......... .......... .......... .......... .......... .......... 284 TGACTGTTAC TGCAGTAAAA TGGGGTTGAA TAGACTGAAT ATCTTTAGAT GCAGAACACA 30217 .......... .......... .......... .......... .......... .......... 284 ACTAGCATGG GGTTGAGATG CAGATGATTC ATCAACTGAT CTGATTATGG GTTTCCTTAA 30277 .......... .......... .......... .......... .......... .......... 284 ATTACCTGCA TGTTTCAACT TTATATGGTT TCTTTAGTTA CTGTATTAGT ATACTCCGTG 30337 .......... .......... .......... .......... .......... .......... 284 GTTTCTCATT AAATATGAGG TAATCGGAAA GTTATACACC CCTCCCTGGA TTTTTATTGT 30397 .......... .......... .......... .......... .......... .......... 284 CTATTGATCT AACGTTTTCT ATGCAGAAGT CCCATGCGGT GGATGCGAGT GATGATGAGA 30457 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AAGT CCCATGCGGT GGATGCGAGT GATGATGAGA 318 TGGATGATGA TGAGAATGAT GCTAATATCA AAGAGACAGT TGAAGAAGAG GAGGAGCCTG 30517 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGATGA TGAGAATGAT GCTAATATCA AAGAGACAGT TGAAGAAGAG GAGGAGCCTG 378 AGATAATTGA ATCTGATATT GAGCTTGATG AGAGTGACAC TGTGGAACCT GACAATGATG 30577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAATTGA ATCTGATATT GAGCTTGATG AGAGTGACAC TGTGGAACCT GACAATGATG 438 AGCCACAGAA GGTTTGCCAT CCGACTTATT TGACATTTTT TCTGTTTTGG ATTTTGAAGG 30637 |||||||||| | AGCCACAGAA G......... .......... .......... .......... .......... 449 TTCATGTTTA TTTTTAACAT TTCAAATCTG TTTTTTCTAG ATGGGAGACC CTTCTGTGGA 30697 |||||||||| |||||||||| .......... .......... .......... .......... ATGGGAGACC CTTCTGTGGA 469 GGTGACTGAA GAAAGCCGTG ATGCTTCTCA GGAGTCCAAA GCTGAGGCCA TGGAAGCAAT 30757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGACTGAA GAAAGCCGTG ATGCTTCTCA GGAGTCCAAA GCTGAGGCCA TGGAAGCAAT 529 TTCTGAAGGT GACGTTGTTC AATGCCTATA TATTGGCATG CCTGTCTTCA TGTTTGCAAA 30817 |||||||| TTCTGAAG.. .......... .......... .......... .......... .......... 537 ATCAGTGGCA TGATCCCTCT CACTTTTGTT GTTGGTGTTC ATCAGGTAAG TTAGAAGATG 30877 ||||| |||||||||| .......... .......... .......... .......... .....GTAAG TTAGAAGATG 552 CAATTGAGCA TCTTACGAAG GCAGTTCTCC TCAATCCTAA ATCAGCAATT ATGTATGCTA 30937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTGAGCA TCTTACGAAG GCAGTTCTCC TCAATCCTAA ATCAGCAATT ATGTATGCTA 612 CTAGAGGTAC GTTTACCAAA TGCTTTCAAA GTGGATTTAT TGATGTTGTT TTTTTTGTAA 30997 |||||| CTAGAG.... .......... .......... .......... .......... .......... 618 TTAGAGTATT CATTTGCATT CAATGAATCA CTGTTTTTTC TTTTTGTCTT ACACAGCTAG 31057 |||| .......... .......... .......... .......... .......... ......CTAG 622 TGTTTATATC AAGATGAAGA AGCCAAACGC TGCCATACGA GATGCAACTG CAGCATTGGA 31117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTATATC AAGATGAAGA AGCCAAACGC TGCCATACGA GATGCAACTG CAGCATTGGA 682 GGTTGTTCTT GCTCTCAGAT TTGCTTACCT GATGTTGTCT CTATTCTGTA TACATTTCTA 31177 | G......... .......... .......... .......... .......... .......... 683 ATTATACAAT TAGTTTTTGA TAAGTTCCCT CAATAATTGC AGTGGATGAC TTCATCAAGT 31237 .......... .......... .......... .......... .......... .......... 683 AAAATATTAA GAGAATGTCG TTGACTGAGT AATATTTCTT CTGGGCTTTA TATGGAAGAT 31297 .......... .......... .......... .......... .......... .......... 683 ACCCTGAATA ATTTATCAGA CATATCTTCT TTACGTGCTC TTCCATTCTT GAGGCAGACA 31357 .......... .......... .......... .......... .......... .......... 683 TGGAGTCATG TAGGCATTAG ATTTGCATGC TTCCTAGTTA ATCCATTTTG GGCATGTGGT 31417 .......... .......... .......... .......... .......... .......... 683 TGAATATATT ATAGTCTTCC CAAATTGTTC TTCATTTTCC TATTTTGAAT GTCTAAATGT 31477 .......... .......... .......... .......... .......... .......... 683 GGGTAGCTAT AGAAATCATT CTTGTTTTGA CCCCTGGTTA AATGCTTCTG GCAAACAGTG 31537 .......... .......... .......... .......... .......... .......... 683 TATAAATACT AGGAACAATT GAAAAAGTAG ATAGCAAGAT TTTAGGAAAA AGATGTTTTC 31597 .......... .......... .......... .......... .......... .......... 683 TTTTGTCCTG CATCACAATG GAAAAAGAAA AATTGGACCA ATTTTGTGTT CAATATATCA 31657 .......... .......... .......... .......... .......... .......... 683 TGGACTCTGG GCTGTTCTTG CAGTTGAATC CAGATTCTGC TAAAGGTTAC AAATCTCGTG 31717 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...TTGAATC CAGATTCTGC TAAAGGTTAC AAATCTCGTG 720 GCATTG-CCA GAGCCATGCT G 31737 |||||| ||| ||| |||||| | GCATTGCCCA GAG-CATGCT G 740 hqPGS_C08HBa0060C12.1+_SGN-E333805+ (28659 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31737) ******************************************************************************** EST sequence 223 +strand 312 n (File: SGN-E279064+) 1 GCACGAGCTC CAGTCCCCTT CCATTTTCCT CGCCTCACTA CCAAAAGGTA GGGTTTACAG 61 TTTCTACAAT CCCAAAATTT TTTGAATCTG TAGTAATCGT ATTTGAAGGT AATCGGAAAA 121 AGCTATGGAC CCGATGAAGT TGAATCAACT GAAGCAATTC GTTGAACAGT GCAAATCCAA 181 TCCTTCCATT CTCTCCGATC CTTCTCTTTC ATTTTTCCGT GACTACATTG AGAATCTCGG 241 TGCTAAACTT CCTCCGGCTG CTTACGACAC CGGCGATTAC AAGAAGAAGT CCATTGCGGT 301 GGATGCCAGT GA Predicted gene structure (within gDNA segment 28011 to 30021): Exon 1 28661 28889 ( 229 n); cDNA 6 234 ( 229 n); score: 0.987 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 0.96) Exon 2 29064 29115 ( 52 n); cDNA 235 286 ( 52 n); score: 0.962 MATCH C08HBa0060C12.1+ SGN-E279064+ 0.982 281 0.901 C PGS_C08HBa0060C12.1+_SGN-E279064+ (28661 28889,29064 29115) Alignment (genomic DNA sequence = upper lines): AGCTCCAGTC CCCTTCCATT TTCCTCGCCT CACTACCAAA AGCTAGGGTT TACAGTTTCT 28720 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| AGCTCCAGTC CCCTTCCATT TTCCTCGCCT CACTACCAAA AGGTAGGGTT TACAGTTTCT 65 ACAATTTCAA AATTTTTTGA ATCTGTAGTA ATCGTATTTG AAGGTAATCG GAAAAAGCTA 28780 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATCCCAA AATTTTTTGA ATCTGTAGTA ATCGTATTTG AAGGTAATCG GAAAAAGCTA 125 TGGACCCGAT GAAGTTGAAT CAACTGAAGC AATTCGTTGA ACAGTGCAAA TCCAATCCTT 28840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACCCGAT GAAGTTGAAT CAACTGAAGC AATTCGTTGA ACAGTGCAAA TCCAATCCTT 185 CCATTCTCTC CGATCCTTCT CTTTCATTTT TCCGTGACTA CATTGAGAAG TAAGTACGCT 28900 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCATTCTCTC CGATCCTTCT CTTTCATTTT TCCGTGACTA CATTGAGAA. .......... 234 GTTTAATTCC ATTTGAGAAC AGTATTTTTT GTTTTTTTCC ATGATCTTAT GCTATTATGA 28960 .......... .......... .......... .......... .......... .......... 234 ACATATGAAT GGATGATGGA TCGCTACTTT GCTTTCAGTT ACTGTAGTTT TGGATGAGTG 29020 .......... .......... .......... .......... .......... .......... 234 AACTTAATGT CGATTCATTT GTTTGATTTT TTTGTTTTTG CAGTCTCGGT GCTAAACTTC 29080 ||||||| |||||||||| .......... .......... .......... .......... ...TCTCGGT GCTAAACTTC 251 CTCCGGCTGC TTACGACACC GGCGATTACA AAGAG 29115 |||||||||| |||||||||| |||||||||| | || CTCCGGCTGC TTACGACACC GGCGATTACA AGAAG 286 hqPGS_C08HBa0060C12.1+_SGN-E279064+ (28661 28889,29064 29115) ******************************************************************************** EST sequence 77 +strand 592 n (File: SGN-E304085+) 1 TTTTCCTCGC CTCACTACCA AAAGCTAGGG TTTACAGTGT CTACAATTTC AAAATTTTTT 61 GAATCTGTAG TAATCGTATT TGAAGGTAAT CGGAAAAAGC TATGGACCCG ATGAAGTTGA 121 ATCAACTGAA GCAATTCGTT GAACAGTGCA AATCCAATCC TTCCATTCTC TCCGATCCTT 181 CTCTTTCATT TTTCCGTGAC TACATTGAGA ATCTCGGTGC TAAACTTCCT CCGGCTGCTT 241 ACGACACCGG CGATTACAAA GAGAAGTCCC ATGCGGTGGA TGCGAGTGAT GATGAGATGG 301 ATGATGATGA GAATGATGCT AATATCAAAG AGACAGTTGA AGAAGAGGAG GAGCCTGAGA 361 TAATTGAATC TGATATTGAG CTTGATGAGA GTGACACTGT GGAACCTGAC AATGATGAGC 421 CACAGAAGAT GGGAGACCCT TCTGTGGAGG TGACTGAAGA AAGCCGTGAT GCTTCTCAGG 481 AGTCCAAAGC TGAGGCCATG GAAGCAATTT CTGAAGGTAA GTTAGAAGAT GCAATTGAGC 541 ATCTTACGAA GGCAGTTCTC CTCAATCCTA AATCAGCAAT TATGTATGCT AC Predicted gene structure (within gDNA segment 28079 to 31548): Exon 1 28679 28889 ( 211 n); cDNA 1 211 ( 211 n); score: 0.995 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 212 263 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 264 428 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 429 516 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 30863 30938 ( 76 n); cDNA 517 592 ( 76 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E304085+ 0.998 592 1.000 C PGS_C08HBa0060C12.1+_SGN-E304085+ (28679 28889,29064 29115,30424 30588,30678 30765,30863 30938) Alignment (genomic DNA sequence = upper lines): TTTTCCTCGC CTCACTACCA AAAGCTAGGG TTTACAGTTT CTACAATTTC AAAATTTTTT 28738 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTTTCCTCGC CTCACTACCA AAAGCTAGGG TTTACAGTGT CTACAATTTC AAAATTTTTT 60 GAATCTGTAG TAATCGTATT TGAAGGTAAT CGGAAAAAGC TATGGACCCG ATGAAGTTGA 28798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCTGTAG TAATCGTATT TGAAGGTAAT CGGAAAAAGC TATGGACCCG ATGAAGTTGA 120 ATCAACTGAA GCAATTCGTT GAACAGTGCA AATCCAATCC TTCCATTCTC TCCGATCCTT 28858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACTGAA GCAATTCGTT GAACAGTGCA AATCCAATCC TTCCATTCTC TCCGATCCTT 180 CTCTTTCATT TTTCCGTGAC TACATTGAGA AGTAAGTACG CTGTTTAATT CCATTTGAGA 28918 |||||||||| |||||||||| |||||||||| | CTCTTTCATT TTTCCGTGAC TACATTGAGA A......... .......... .......... 211 ACAGTATTTT TTGTTTTTTT CCATGATCTT ATGCTATTAT GAACATATGA ATGGATGATG 28978 .......... .......... .......... .......... .......... .......... 211 GATCGCTACT TTGCTTTCAG TTACTGTAGT TTTGGATGAG TGAACTTAAT GTCGATTCAT 29038 .......... .......... .......... .......... .......... .......... 211 TTGTTTGATT TTTTTGTTTT TGCAGTCTCG GTGCTAAACT TCCTCCGGCT GCTTACGACA 29098 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....TCTCG GTGCTAAACT TCCTCCGGCT GCTTACGACA 246 CCGGCGATTA CAAAGAGGTA TTTTCCTTGC TTCATTATCT TCTTACTTAG AATTAGTGTG 29158 |||||||||| ||||||| CCGGCGATTA CAAAGAG... .......... .......... .......... .......... 263 ATGTAATGGT CAATGACGTG GGTTGAAAAT AATGAGGGTC TGAGGTTCAA ATCCCAGCAC 29218 .......... .......... .......... .......... .......... .......... 263 AATTAAAAAA TACTAGTTGA TTTCTTCCCC ATTAGTTACC TTGTACTTGT TGGTGATTTC 29278 .......... .......... .......... .......... .......... .......... 263 TTCCCCCATT AGTTACCTTG TACTTGTTGC GGGTGGGAGG TGGCTTGTAG CTCGTGGAAT 29338 .......... .......... .......... .......... .......... .......... 263 TAGTCTGAGG TGAGGGCAAG TTGGTTTGGA CACCACGGTT GAAAATAAGT AAATAAAAGA 29398 .......... .......... .......... .......... .......... .......... 263 TTATTGTTTC TGATGAGTAA AGTTACTGTA CAATCACCAA TAGGGAATCT TAATATAATT 29458 .......... .......... .......... .......... .......... .......... 263 AACCGGAAGT TTATTATTGT TAAAACTAAT AAAAGAAACG CTCAAATCAC TATATATATA 29518 .......... .......... .......... .......... .......... .......... 263 TATATATATA TATATATATA TATATATATA TATATATACC AGGGATGTCT CTTATTTATG 29578 .......... .......... .......... .......... .......... .......... 263 TCTAACGACT ACTCATGTGA TTTGGAATAG AGTTAGGGTA TTAAAATTCT TCTAGGTCAA 29638 .......... .......... .......... .......... .......... .......... 263 AGATTAAAGA GCTTCATTTA ATATCATCTA TGAATATACA CTAGGTTGCA CAAAAAAGTT 29698 .......... .......... .......... .......... .......... .......... 263 GTTCTTGGAT CAATCCAAAG CCCAACCTCC TCGGGTTCGA GGCCTAGGTA TGGAAAAATC 29758 .......... .......... .......... .......... .......... .......... 263 CTTGGCAGGA GCACTAACCC TGAATGGGAA CCTACTCAGC ACGAATACGG ATTAGTCGGA 29818 .......... .......... .......... .......... .......... .......... 263 CTCCAATGTG TGTACCGGAC ACTAGATGGG AAACAGCTCC CCCTCCAACC CCCAACACCC 29878 .......... .......... .......... .......... .......... .......... 263 ACCCCCAAAA AAAGGATCGA TGACTCTTAA AATCGTGTGT TTGGATATTT GGATACTACT 29938 .......... .......... .......... .......... .......... .......... 263 GAACATGTCC AATTATTTTT CCGAACAATT TAGTCCTATC ATATGAAAGC AAGTTGTTTA 29998 .......... .......... .......... .......... .......... .......... 263 AAAAATTCTG CGGTCTCAAG GAATTAAGAA TTAGTATATT ATAGAAGCAA GAGATTCAAA 30058 .......... .......... .......... .......... .......... .......... 263 ATGGTTGGGA AGTAATGCTC AGTTGTTAGA CTTATTTAGC TCCACATAGG CAAGTGTGAG 30118 .......... .......... .......... .......... .......... .......... 263 GTTTATTAAA CTTCTGATAT GCCTTGGAAG GCAAATTACT GACTGTTACT GCAGTAAAAT 30178 .......... .......... .......... .......... .......... .......... 263 GGGGTTGAAT AGACTGAATA TCTTTAGATG CAGAACACAA CTAGCATGGG GTTGAGATGC 30238 .......... .......... .......... .......... .......... .......... 263 AGATGATTCA TCAACTGATC TGATTATGGG TTTCCTTAAA TTACCTGCAT GTTTCAACTT 30298 .......... .......... .......... .......... .......... .......... 263 TATATGGTTT CTTTAGTTAC TGTATTAGTA TACTCCGTGG TTTCTCATTA AATATGAGGT 30358 .......... .......... .......... .......... .......... .......... 263 AATCGGAAAG TTATACACCC CTCCCTGGAT TTTTATTGTC TATTGATCTA ACGTTTTCTA 30418 .......... .......... .......... .......... .......... .......... 263 TGCAGAAGTC CCATGCGGTG GATGCGAGTG ATGATGAGAT GGATGATGAT GAGAATGATG 30478 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....AAGTC CCATGCGGTG GATGCGAGTG ATGATGAGAT GGATGATGAT GAGAATGATG 318 CTAATATCAA AGAGACAGTT GAAGAAGAGG AGGAGCCTGA GATAATTGAA TCTGATATTG 30538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATATCAA AGAGACAGTT GAAGAAGAGG AGGAGCCTGA GATAATTGAA TCTGATATTG 378 AGCTTGATGA GAGTGACACT GTGGAACCTG ACAATGATGA GCCACAGAAG GTTTGCCATC 30598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGATGA GAGTGACACT GTGGAACCTG ACAATGATGA GCCACAGAAG .......... 428 CGACTTATTT GACATTTTTT CTGTTTTGGA TTTTGAAGGT TCATGTTTAT TTTTAACATT 30658 .......... .......... .......... .......... .......... .......... 428 TCAAATCTGT TTTTTCTAGA TGGGAGACCC TTCTGTGGAG GTGACTGAAG AAAGCCGTGA 30718 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A TGGGAGACCC TTCTGTGGAG GTGACTGAAG AAAGCCGTGA 469 TGCTTCTCAG GAGTCCAAAG CTGAGGCCAT GGAAGCAATT TCTGAAGGTG ACGTTGTTCA 30778 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGCTTCTCAG GAGTCCAAAG CTGAGGCCAT GGAAGCAATT TCTGAAG... .......... 516 ATGCCTATAT ATTGGCATGC CTGTCTTCAT GTTTGCAAAA TCAGTGGCAT GATCCCTCTC 30838 .......... .......... .......... .......... .......... .......... 516 ACTTTTGTTG TTGGTGTTCA TCAGGTAAGT TAGAAGATGC AATTGAGCAT CTTACGAAGG 30898 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTAAGT TAGAAGATGC AATTGAGCAT CTTACGAAGG 552 CAGTTCTCCT CAATCCTAAA TCAGCAATTA TGTATGCTAC 30938 |||||||||| |||||||||| |||||||||| |||||||||| CAGTTCTCCT CAATCCTAAA TCAGCAATTA TGTATGCTAC 592 hqPGS_C08HBa0060C12.1+_SGN-E304085+ (28679 28889,29064 29115,30424 30588,30678 30765,30863 30938) ******************************************************************************** EST sequence 163 +strand 722 n (File: SGN-E331934+) 1 TTTTGAATCT GTAGTAATCG TATTTGAAGG TAATCGGAAA AAGCTATGGA CCCGATGAAG 61 TTGAATCAAC TGAAGCAATT CGTTGAACAG TGCAAATCCA ATCCTTCCAT TCTCTCCGAT 121 CCTTCTCTTT CATTTTTCCG TGACTACATT GAGAATCTCG GTGCTAAACT TCCTCCGGCT 181 GCTTACGACA CCGGCGATTA CAAAGAGAAG TCCCATGCGG TGGATGCGAG TGATGATGAG 241 ATGGATGATG ATGAGAATGA TGCTAATATC AAAGAGACAG TTGAAGAAGA GGAGGAGCCT 301 GAGATAATTG AATCTGATAT TGAGCTTGAT GAGAGTGACA CTGTGGAACC TGACAATGAT 361 GAGCCACAGA AGATGGGAGA CCCTTCTGTG GAGGTGACTG AAGAAAGCCG TGATGCTTCT 421 CAGGAGTCCA AAGCTGAGGC CATGGAAGCA ATTTCTGAAG GTAAGTTAGA AGATGCAATT 481 GAGCATCTTA CGAAGGCAGT TCTCCTCAAT CCTAAATCAG CAATTATGTA TGCTACTAGA 541 GCTAGTGTTT ATATCAAGAT GAAGAAGCCA AACGCTGCCA TACGAGATGC AACTGCAGCA 601 TTGGAGTTGA ATCCAGATTC TGCTAAAGTT ACAAATCTCG TGGCATTGCC AGAGCCATGC 661 TGGGACAGTG GGAGGCAGCT GCTAAGGATC TTCATGTGGC TTCGAAGCTG GACTATGATG 721 AG Predicted gene structure (within gDNA segment 28135 to 32407): Exon 1 28735 28889 ( 155 n); cDNA 1 155 ( 155 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 156 207 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 208 372 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 373 460 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 30863 30943 ( 81 n); cDNA 461 541 ( 81 n); score: 1.000 Intron 5 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 31054 31118 ( 65 n); cDNA 542 606 ( 65 n); score: 1.000 Intron 6 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 0.98) Exon 7 31681 31797 ( 117 n); cDNA 607 722 ( 116 n); score: 0.991 MATCH C08HBa0060C12.1+ SGN-E331934+ 0.999 723 1.001 C PGS_C08HBa0060C12.1+_SGN-E331934+ (28735 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31797) Alignment (genomic DNA sequence = upper lines): TTTTGAATCT GTAGTAATCG TATTTGAAGG TAATCGGAAA AAGCTATGGA CCCGATGAAG 28794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGAATCT GTAGTAATCG TATTTGAAGG TAATCGGAAA AAGCTATGGA CCCGATGAAG 60 TTGAATCAAC TGAAGCAATT CGTTGAACAG TGCAAATCCA ATCCTTCCAT TCTCTCCGAT 28854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATCAAC TGAAGCAATT CGTTGAACAG TGCAAATCCA ATCCTTCCAT TCTCTCCGAT 120 CCTTCTCTTT CATTTTTCCG TGACTACATT GAGAAGTAAG TACGCTGTTT AATTCCATTT 28914 |||||||||| |||||||||| |||||||||| ||||| CCTTCTCTTT CATTTTTCCG TGACTACATT GAGAA..... .......... .......... 155 GAGAACAGTA TTTTTTGTTT TTTTCCATGA TCTTATGCTA TTATGAACAT ATGAATGGAT 28974 .......... .......... .......... .......... .......... .......... 155 GATGGATCGC TACTTTGCTT TCAGTTACTG TAGTTTTGGA TGAGTGAACT TAATGTCGAT 29034 .......... .......... .......... .......... .......... .......... 155 TCATTTGTTT GATTTTTTTG TTTTTGCAGT CTCGGTGCTA AACTTCCTCC GGCTGCTTAC 29094 | |||||||||| |||||||||| |||||||||| .......... .......... .........T CTCGGTGCTA AACTTCCTCC GGCTGCTTAC 186 GACACCGGCG ATTACAAAGA GGTATTTTCC TTGCTTCATT ATCTTCTTAC TTAGAATTAG 29154 |||||||||| |||||||||| | GACACCGGCG ATTACAAAGA G......... .......... .......... .......... 207 TGTGATGTAA TGGTCAATGA CGTGGGTTGA AAATAATGAG GGTCTGAGGT TCAAATCCCA 29214 .......... .......... .......... .......... .......... .......... 207 GCACAATTAA AAAATACTAG TTGATTTCTT CCCCATTAGT TACCTTGTAC TTGTTGGTGA 29274 .......... .......... .......... .......... .......... .......... 207 TTTCTTCCCC CATTAGTTAC CTTGTACTTG TTGCGGGTGG GAGGTGGCTT GTAGCTCGTG 29334 .......... .......... .......... .......... .......... .......... 207 GAATTAGTCT GAGGTGAGGG CAAGTTGGTT TGGACACCAC GGTTGAAAAT AAGTAAATAA 29394 .......... .......... .......... .......... .......... .......... 207 AAGATTATTG TTTCTGATGA GTAAAGTTAC TGTACAATCA CCAATAGGGA ATCTTAATAT 29454 .......... .......... .......... .......... .......... .......... 207 AATTAACCGG AAGTTTATTA TTGTTAAAAC TAATAAAAGA AACGCTCAAA TCACTATATA 29514 .......... .......... .......... .......... .......... .......... 207 TATATATATA TATATATATA TATATATATA TATATATATA TACCAGGGAT GTCTCTTATT 29574 .......... .......... .......... .......... .......... .......... 207 TATGTCTAAC GACTACTCAT GTGATTTGGA ATAGAGTTAG GGTATTAAAA TTCTTCTAGG 29634 .......... .......... .......... .......... .......... .......... 207 TCAAAGATTA AAGAGCTTCA TTTAATATCA TCTATGAATA TACACTAGGT TGCACAAAAA 29694 .......... .......... .......... .......... .......... .......... 207 AGTTGTTCTT GGATCAATCC AAAGCCCAAC CTCCTCGGGT TCGAGGCCTA GGTATGGAAA 29754 .......... .......... .......... .......... .......... .......... 207 AATCCTTGGC AGGAGCACTA ACCCTGAATG GGAACCTACT CAGCACGAAT ACGGATTAGT 29814 .......... .......... .......... .......... .......... .......... 207 CGGACTCCAA TGTGTGTACC GGACACTAGA TGGGAAACAG CTCCCCCTCC AACCCCCAAC 29874 .......... .......... .......... .......... .......... .......... 207 ACCCACCCCC AAAAAAAGGA TCGATGACTC TTAAAATCGT GTGTTTGGAT ATTTGGATAC 29934 .......... .......... .......... .......... .......... .......... 207 TACTGAACAT GTCCAATTAT TTTTCCGAAC AATTTAGTCC TATCATATGA AAGCAAGTTG 29994 .......... .......... .......... .......... .......... .......... 207 TTTAAAAAAT TCTGCGGTCT CAAGGAATTA AGAATTAGTA TATTATAGAA GCAAGAGATT 30054 .......... .......... .......... .......... .......... .......... 207 CAAAATGGTT GGGAAGTAAT GCTCAGTTGT TAGACTTATT TAGCTCCACA TAGGCAAGTG 30114 .......... .......... .......... .......... .......... .......... 207 TGAGGTTTAT TAAACTTCTG ATATGCCTTG GAAGGCAAAT TACTGACTGT TACTGCAGTA 30174 .......... .......... .......... .......... .......... .......... 207 AAATGGGGTT GAATAGACTG AATATCTTTA GATGCAGAAC ACAACTAGCA TGGGGTTGAG 30234 .......... .......... .......... .......... .......... .......... 207 ATGCAGATGA TTCATCAACT GATCTGATTA TGGGTTTCCT TAAATTACCT GCATGTTTCA 30294 .......... .......... .......... .......... .......... .......... 207 ACTTTATATG GTTTCTTTAG TTACTGTATT AGTATACTCC GTGGTTTCTC ATTAAATATG 30354 .......... .......... .......... .......... .......... .......... 207 AGGTAATCGG AAAGTTATAC ACCCCTCCCT GGATTTTTAT TGTCTATTGA TCTAACGTTT 30414 .......... .......... .......... .......... .......... .......... 207 TCTATGCAGA AGTCCCATGC GGTGGATGCG AGTGATGATG AGATGGATGA TGATGAGAAT 30474 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........A AGTCCCATGC GGTGGATGCG AGTGATGATG AGATGGATGA TGATGAGAAT 258 GATGCTAATA TCAAAGAGAC AGTTGAAGAA GAGGAGGAGC CTGAGATAAT TGAATCTGAT 30534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTAATA TCAAAGAGAC AGTTGAAGAA GAGGAGGAGC CTGAGATAAT TGAATCTGAT 318 ATTGAGCTTG ATGAGAGTGA CACTGTGGAA CCTGACAATG ATGAGCCACA GAAGGTTTGC 30594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATTGAGCTTG ATGAGAGTGA CACTGTGGAA CCTGACAATG ATGAGCCACA GAAG...... 372 CATCCGACTT ATTTGACATT TTTTCTGTTT TGGATTTTGA AGGTTCATGT TTATTTTTAA 30654 .......... .......... .......... .......... .......... .......... 372 CATTTCAAAT CTGTTTTTTC TAGATGGGAG ACCCTTCTGT GGAGGTGACT GAAGAAAGCC 30714 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATGGGAG ACCCTTCTGT GGAGGTGACT GAAGAAAGCC 409 GTGATGCTTC TCAGGAGTCC AAAGCTGAGG CCATGGAAGC AATTTCTGAA GGTGACGTTG 30774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTGATGCTTC TCAGGAGTCC AAAGCTGAGG CCATGGAAGC AATTTCTGAA G......... 460 TTCAATGCCT ATATATTGGC ATGCCTGTCT TCATGTTTGC AAAATCAGTG GCATGATCCC 30834 .......... .......... .......... .......... .......... .......... 460 TCTCACTTTT GTTGTTGGTG TTCATCAGGT AAGTTAGAAG ATGCAATTGA GCATCTTACG 30894 || |||||||||| |||||||||| |||||||||| .......... .......... ........GT AAGTTAGAAG ATGCAATTGA GCATCTTACG 492 AAGGCAGTTC TCCTCAATCC TAAATCAGCA ATTATGTATG CTACTAGAGG TACGTTTACC 30954 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGGCAGTTC TCCTCAATCC TAAATCAGCA ATTATGTATG CTACTAGAG. .......... 541 AAATGCTTTC AAAGTGGATT TATTGATGTT GTTTTTTTTG TAATTAGAGT ATTCATTTGC 31014 .......... .......... .......... .......... .......... .......... 541 ATTCAATGAA TCACTGTTTT TTCTTTTTGT CTTACACAGC TAGTGTTTAT ATCAAGATGA 31074 | |||||||||| |||||||||| .......... .......... .......... .........C TAGTGTTTAT ATCAAGATGA 562 AGAAGCCAAA CGCTGCCATA CGAGATGCAA CTGCAGCATT GGAGGTTGTT CTTGCTCTCA 31134 |||||||||| |||||||||| |||||||||| |||||||||| |||| AGAAGCCAAA CGCTGCCATA CGAGATGCAA CTGCAGCATT GGAG...... .......... 606 GATTTGCTTA CCTGATGTTG TCTCTATTCT GTATACATTT CTAATTATAC AATTAGTTTT 31194 .......... .......... .......... .......... .......... .......... 606 TGATAAGTTC CCTCAATAAT TGCAGTGGAT GACTTCATCA AGTAAAATAT TAAGAGAATG 31254 .......... .......... .......... .......... .......... .......... 606 TCGTTGACTG AGTAATATTT CTTCTGGGCT TTATATGGAA GATACCCTGA ATAATTTATC 31314 .......... .......... .......... .......... .......... .......... 606 AGACATATCT TCTTTACGTG CTCTTCCATT CTTGAGGCAG ACATGGAGTC ATGTAGGCAT 31374 .......... .......... .......... .......... .......... .......... 606 TAGATTTGCA TGCTTCCTAG TTAATCCATT TTGGGCATGT GGTTGAATAT ATTATAGTCT 31434 .......... .......... .......... .......... .......... .......... 606 TCCCAAATTG TTCTTCATTT TCCTATTTTG AATGTCTAAA TGTGGGTAGC TATAGAAATC 31494 .......... .......... .......... .......... .......... .......... 606 ATTCTTGTTT TGACCCCTGG TTAAATGCTT CTGGCAAACA GTGTATAAAT ACTAGGAACA 31554 .......... .......... .......... .......... .......... .......... 606 ATTGAAAAAG TAGATAGCAA GATTTTAGGA AAAAGATGTT TTCTTTTGTC CTGCATCACA 31614 .......... .......... .......... .......... .......... .......... 606 ATGGAAAAAG AAAAATTGGA CCAATTTTGT GTTCAATATA TCATGGACTC TGGGCTGTTC 31674 .......... .......... .......... .......... .......... .......... 606 TTGCAGTTGA ATCCAGATTC TGCTAAAGGT TACAAATCTC GTGGCATTGC CAGAGCCATG 31734 |||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ......TTGA ATCCAGATTC TGCTAAA-GT TACAAATCTC GTGGCATTGC CAGAGCCATG 659 CTGGGACAGT GGGAGGCAGC TGCTAAGGAT CTTCATGTGG CTTCGAAGCT GGACTATGAT 31794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGACAGT GGGAGGCAGC TGCTAAGGAT CTTCATGTGG CTTCGAAGCT GGACTATGAT 719 GAG 31797 ||| GAG 722 hqPGS_C08HBa0060C12.1+_SGN-E331934+ (28735 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31797) ******************************************************************************** EST sequence 216 +strand 485 n (File: SGN-E266123+) 1 TTGAATCTGT AGTAATCGTA TTTGAAGGTA ATCGGAAAAA GCTATGGACC CGATGAAGTT 61 GAATCAACTG AAGCAATTCG TTGAACAGTG CAAATCCAAT CCTTCCATTC TCTCCGATCC 121 TTCTCTTTCA TTTTTCCGTG ACTACATTGA GAATCTCGGT GCTAAACTTC CTCCGGCTGC 181 TTACGACACC GGCGATTACA AAGAGTCCCA TGCGGTGGAT GCGAGTGATG ATGAGATGGA 241 TGATGATGAG AATGATGCTA ATATCAAAGA GACAGTTGAA GAAGAGGAGG AGCCTGAGAT 301 AATTGAATCT GATATTGAGC TTGATGAGAG TGACACTGTG GAACCTGACA ATGATGAGCC 361 ACAGAAGATG GGAGACCCTT CTGTGGAGGT GACTGAAGAA AGCCGTGATG CTTCTCAGGA 421 GTCCAAAGCT GAGGCCATGG AAGCAATTTC TGAAGGTAAG TTAGAAGATG CAATTGAGCA 481 TCTTA Predicted gene structure (within gDNA segment 28137 to 31502): Exon 1 28737 28889 ( 153 n); cDNA 1 153 ( 153 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 154 205 ( 52 n); score: 1.000 Intron 2 29116 30426 (1311 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 30427 30588 ( 162 n); cDNA 206 367 ( 162 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 368 455 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 0) Exon 5 30863 30892 ( 30 n); cDNA 456 485 ( 30 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E266123+ 1.000 485 1.000 C PGS_C08HBa0060C12.1+_SGN-E266123+ (28737 28889,29064 29115,30427 30588,30678 30765,30863 30892) Alignment (genomic DNA sequence = upper lines): TTGAATCTGT AGTAATCGTA TTTGAAGGTA ATCGGAAAAA GCTATGGACC CGATGAAGTT 28796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATCTGT AGTAATCGTA TTTGAAGGTA ATCGGAAAAA GCTATGGACC CGATGAAGTT 60 GAATCAACTG AAGCAATTCG TTGAACAGTG CAAATCCAAT CCTTCCATTC TCTCCGATCC 28856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCAACTG AAGCAATTCG TTGAACAGTG CAAATCCAAT CCTTCCATTC TCTCCGATCC 120 TTCTCTTTCA TTTTTCCGTG ACTACATTGA GAAGTAAGTA CGCTGTTTAA TTCCATTTGA 28916 |||||||||| |||||||||| |||||||||| ||| TTCTCTTTCA TTTTTCCGTG ACTACATTGA GAA....... .......... .......... 153 GAACAGTATT TTTTGTTTTT TTCCATGATC TTATGCTATT ATGAACATAT GAATGGATGA 28976 .......... .......... .......... .......... .......... .......... 153 TGGATCGCTA CTTTGCTTTC AGTTACTGTA GTTTTGGATG AGTGAACTTA ATGTCGATTC 29036 .......... .......... .......... .......... .......... .......... 153 ATTTGTTTGA TTTTTTTGTT TTTGCAGTCT CGGTGCTAAA CTTCCTCCGG CTGCTTACGA 29096 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TCT CGGTGCTAAA CTTCCTCCGG CTGCTTACGA 186 CACCGGCGAT TACAAAGAGG TATTTTCCTT GCTTCATTAT CTTCTTACTT AGAATTAGTG 29156 |||||||||| ||||||||| CACCGGCGAT TACAAAGAG. .......... .......... .......... .......... 205 TGATGTAATG GTCAATGACG TGGGTTGAAA ATAATGAGGG TCTGAGGTTC AAATCCCAGC 29216 .......... .......... .......... .......... .......... .......... 205 ACAATTAAAA AATACTAGTT GATTTCTTCC CCATTAGTTA CCTTGTACTT GTTGGTGATT 29276 .......... .......... .......... .......... .......... .......... 205 TCTTCCCCCA TTAGTTACCT TGTACTTGTT GCGGGTGGGA GGTGGCTTGT AGCTCGTGGA 29336 .......... .......... .......... .......... .......... .......... 205 ATTAGTCTGA GGTGAGGGCA AGTTGGTTTG GACACCACGG TTGAAAATAA GTAAATAAAA 29396 .......... .......... .......... .......... .......... .......... 205 GATTATTGTT TCTGATGAGT AAAGTTACTG TACAATCACC AATAGGGAAT CTTAATATAA 29456 .......... .......... .......... .......... .......... .......... 205 TTAACCGGAA GTTTATTATT GTTAAAACTA ATAAAAGAAA CGCTCAAATC ACTATATATA 29516 .......... .......... .......... .......... .......... .......... 205 TATATATATA TATATATATA TATATATATA TATATATATA CCAGGGATGT CTCTTATTTA 29576 .......... .......... .......... .......... .......... .......... 205 TGTCTAACGA CTACTCATGT GATTTGGAAT AGAGTTAGGG TATTAAAATT CTTCTAGGTC 29636 .......... .......... .......... .......... .......... .......... 205 AAAGATTAAA GAGCTTCATT TAATATCATC TATGAATATA CACTAGGTTG CACAAAAAAG 29696 .......... .......... .......... .......... .......... .......... 205 TTGTTCTTGG ATCAATCCAA AGCCCAACCT CCTCGGGTTC GAGGCCTAGG TATGGAAAAA 29756 .......... .......... .......... .......... .......... .......... 205 TCCTTGGCAG GAGCACTAAC CCTGAATGGG AACCTACTCA GCACGAATAC GGATTAGTCG 29816 .......... .......... .......... .......... .......... .......... 205 GACTCCAATG TGTGTACCGG ACACTAGATG GGAAACAGCT CCCCCTCCAA CCCCCAACAC 29876 .......... .......... .......... .......... .......... .......... 205 CCACCCCCAA AAAAAGGATC GATGACTCTT AAAATCGTGT GTTTGGATAT TTGGATACTA 29936 .......... .......... .......... .......... .......... .......... 205 CTGAACATGT CCAATTATTT TTCCGAACAA TTTAGTCCTA TCATATGAAA GCAAGTTGTT 29996 .......... .......... .......... .......... .......... .......... 205 TAAAAAATTC TGCGGTCTCA AGGAATTAAG AATTAGTATA TTATAGAAGC AAGAGATTCA 30056 .......... .......... .......... .......... .......... .......... 205 AAATGGTTGG GAAGTAATGC TCAGTTGTTA GACTTATTTA GCTCCACATA GGCAAGTGTG 30116 .......... .......... .......... .......... .......... .......... 205 AGGTTTATTA AACTTCTGAT ATGCCTTGGA AGGCAAATTA CTGACTGTTA CTGCAGTAAA 30176 .......... .......... .......... .......... .......... .......... 205 ATGGGGTTGA ATAGACTGAA TATCTTTAGA TGCAGAACAC AACTAGCATG GGGTTGAGAT 30236 .......... .......... .......... .......... .......... .......... 205 GCAGATGATT CATCAACTGA TCTGATTATG GGTTTCCTTA AATTACCTGC ATGTTTCAAC 30296 .......... .......... .......... .......... .......... .......... 205 TTTATATGGT TTCTTTAGTT ACTGTATTAG TATACTCCGT GGTTTCTCAT TAAATATGAG 30356 .......... .......... .......... .......... .......... .......... 205 GTAATCGGAA AGTTATACAC CCCTCCCTGG ATTTTTATTG TCTATTGATC TAACGTTTTC 30416 .......... .......... .......... .......... .......... .......... 205 TATGCAGAAG TCCCATGCGG TGGATGCGAG TGATGATGAG ATGGATGATG ATGAGAATGA 30476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TCCCATGCGG TGGATGCGAG TGATGATGAG ATGGATGATG ATGAGAATGA 255 TGCTAATATC AAAGAGACAG TTGAAGAAGA GGAGGAGCCT GAGATAATTG AATCTGATAT 30536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTAATATC AAAGAGACAG TTGAAGAAGA GGAGGAGCCT GAGATAATTG AATCTGATAT 315 TGAGCTTGAT GAGAGTGACA CTGTGGAACC TGACAATGAT GAGCCACAGA AGGTTTGCCA 30596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGAGCTTGAT GAGAGTGACA CTGTGGAACC TGACAATGAT GAGCCACAGA AG........ 367 TCCGACTTAT TTGACATTTT TTCTGTTTTG GATTTTGAAG GTTCATGTTT ATTTTTAACA 30656 .......... .......... .......... .......... .......... .......... 367 TTTCAAATCT GTTTTTTCTA GATGGGAGAC CCTTCTGTGG AGGTGACTGA AGAAAGCCGT 30716 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .ATGGGAGAC CCTTCTGTGG AGGTGACTGA AGAAAGCCGT 406 GATGCTTCTC AGGAGTCCAA AGCTGAGGCC ATGGAAGCAA TTTCTGAAGG TGACGTTGTT 30776 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GATGCTTCTC AGGAGTCCAA AGCTGAGGCC ATGGAAGCAA TTTCTGAAG. .......... 455 CAATGCCTAT ATATTGGCAT GCCTGTCTTC ATGTTTGCAA AATCAGTGGC ATGATCCCTC 30836 .......... .......... .......... .......... .......... .......... 455 TCACTTTTGT TGTTGGTGTT CATCAGGTAA GTTAGAAGAT GCAATTGAGC ATCTTA 30892 |||| |||||||||| |||||||||| |||||| .......... .......... ......GTAA GTTAGAAGAT GCAATTGAGC ATCTTA 485 hqPGS_C08HBa0060C12.1+_SGN-E266123+ (28737 28889,29064 29115,30427 30588,30678 30765,30863 30892) ******************************************************************************** EST sequence 198 +strand 760 n (File: SGN-E543951+) 1 CGATGAAATT GAATCAACTG AAGCAATTCG TTGAACAGTG CAAATCCAAT CCTTCCATTC 61 TCTCCGATCC TTCTCTTTCA TTTTTCCGTG ACTACATTGA GAATCTCGGT GCTAAACTTC 121 CTCCGGCTGC TTACGACACC GGCGATTACA AAGAGAAGTC CCATGCGGTG GATGCGAGTG 181 ATGATGAGAT GGATGATGAT GAGAATGATG CTAATATCAA AGAGACAGCT GAAGAACAGG 241 AGGAGCCTGA GATAATTGAA TCTGATATTG AGCTTGATGA GAGTGACACT GTGGAACCTG 301 ACTATGATGA GCCACAGAAG ATGGGAGACC CTTCTGTGGA GGTGACTGAA GAAAGCCGTG 361 ATGCTTCTCA GGAGTCCAAA GCTGAGGCCA TGGAAGCAAT TTCTGAAGGT AAGTTAGAAG 421 ATGCAATTGA GCATCTTACG AAGGCAGTTC TCCTCAATCC TAAATCAGCA ATTATGTATG 481 CTACTAGAGC TAGTGTTTAT ATCAAGATGA AGAAGCCAAA CGCTGCCATA CGAGATGCAA 541 CTGCAGCATT GGAGTTGAAT CCAGATTCTG CTAAAGGTTA CAAATCTCGT GGCATTGCCA 601 GAGCCATGCT GGGACAGTGG GAGGCAGCTG CTAAGGATCT TCATGTGGCT TCGAAGCTGG 661 ACTATGATGA GGAAATAAGT GCTGTGCTTA AGAAGGTTGA GCCCAATGCA CATAGAATTG 721 AAGAACACCG CANGAAATAT GATAGGTTGC GCAAAGAACG Predicted gene structure (within gDNA segment 28115 to 32661): Exon 1 28787 28889 ( 103 n); cDNA 1 103 ( 103 n); score: 0.990 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 104 155 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 156 320 ( 165 n); score: 0.982 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 321 408 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 30863 30943 ( 81 n); cDNA 409 489 ( 81 n); score: 1.000 Intron 5 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 31054 31118 ( 65 n); cDNA 490 554 ( 65 n); score: 1.000 Intron 6 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 1.00) Exon 7 31681 31821 ( 141 n); cDNA 555 695 ( 141 n); score: 1.000 Intron 7 31822 31986 ( 165 n); Pd: 0.812 (s: 1.00), Pa: 0.996 (s: 0.98) Exon 8 31987 32051 ( 65 n); cDNA 696 760 ( 65 n); score: 0.985 MATCH C08HBa0060C12.1+ SGN-E543951+ 0.993 760 1.000 C PGS_C08HBa0060C12.1+_SGN-E543951+ (28787 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32051) Alignment (genomic DNA sequence = upper lines): CGATGAAGTT GAATCAACTG AAGCAATTCG TTGAACAGTG CAAATCCAAT CCTTCCATTC 28846 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATGAAATT GAATCAACTG AAGCAATTCG TTGAACAGTG CAAATCCAAT CCTTCCATTC 60 TCTCCGATCC TTCTCTTTCA TTTTTCCGTG ACTACATTGA GAAGTAAGTA CGCTGTTTAA 28906 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCTCCGATCC TTCTCTTTCA TTTTTCCGTG ACTACATTGA GAA....... .......... 103 TTCCATTTGA GAACAGTATT TTTTGTTTTT TTCCATGATC TTATGCTATT ATGAACATAT 28966 .......... .......... .......... .......... .......... .......... 103 GAATGGATGA TGGATCGCTA CTTTGCTTTC AGTTACTGTA GTTTTGGATG AGTGAACTTA 29026 .......... .......... .......... .......... .......... .......... 103 ATGTCGATTC ATTTGTTTGA TTTTTTTGTT TTTGCAGTCT CGGTGCTAAA CTTCCTCCGG 29086 ||| |||||||||| |||||||||| .......... .......... .......... .......TCT CGGTGCTAAA CTTCCTCCGG 126 CTGCTTACGA CACCGGCGAT TACAAAGAGG TATTTTCCTT GCTTCATTAT CTTCTTACTT 29146 |||||||||| |||||||||| ||||||||| CTGCTTACGA CACCGGCGAT TACAAAGAG. .......... .......... .......... 155 AGAATTAGTG TGATGTAATG GTCAATGACG TGGGTTGAAA ATAATGAGGG TCTGAGGTTC 29206 .......... .......... .......... .......... .......... .......... 155 AAATCCCAGC ACAATTAAAA AATACTAGTT GATTTCTTCC CCATTAGTTA CCTTGTACTT 29266 .......... .......... .......... .......... .......... .......... 155 GTTGGTGATT TCTTCCCCCA TTAGTTACCT TGTACTTGTT GCGGGTGGGA GGTGGCTTGT 29326 .......... .......... .......... .......... .......... .......... 155 AGCTCGTGGA ATTAGTCTGA GGTGAGGGCA AGTTGGTTTG GACACCACGG TTGAAAATAA 29386 .......... .......... .......... .......... .......... .......... 155 GTAAATAAAA GATTATTGTT TCTGATGAGT AAAGTTACTG TACAATCACC AATAGGGAAT 29446 .......... .......... .......... .......... .......... .......... 155 CTTAATATAA TTAACCGGAA GTTTATTATT GTTAAAACTA ATAAAAGAAA CGCTCAAATC 29506 .......... .......... .......... .......... .......... .......... 155 ACTATATATA TATATATATA TATATATATA TATATATATA TATATATATA CCAGGGATGT 29566 .......... .......... .......... .......... .......... .......... 155 CTCTTATTTA TGTCTAACGA CTACTCATGT GATTTGGAAT AGAGTTAGGG TATTAAAATT 29626 .......... .......... .......... .......... .......... .......... 155 CTTCTAGGTC AAAGATTAAA GAGCTTCATT TAATATCATC TATGAATATA CACTAGGTTG 29686 .......... .......... .......... .......... .......... .......... 155 CACAAAAAAG TTGTTCTTGG ATCAATCCAA AGCCCAACCT CCTCGGGTTC GAGGCCTAGG 29746 .......... .......... .......... .......... .......... .......... 155 TATGGAAAAA TCCTTGGCAG GAGCACTAAC CCTGAATGGG AACCTACTCA GCACGAATAC 29806 .......... .......... .......... .......... .......... .......... 155 GGATTAGTCG GACTCCAATG TGTGTACCGG ACACTAGATG GGAAACAGCT CCCCCTCCAA 29866 .......... .......... .......... .......... .......... .......... 155 CCCCCAACAC CCACCCCCAA AAAAAGGATC GATGACTCTT AAAATCGTGT GTTTGGATAT 29926 .......... .......... .......... .......... .......... .......... 155 TTGGATACTA CTGAACATGT CCAATTATTT TTCCGAACAA TTTAGTCCTA TCATATGAAA 29986 .......... .......... .......... .......... .......... .......... 155 GCAAGTTGTT TAAAAAATTC TGCGGTCTCA AGGAATTAAG AATTAGTATA TTATAGAAGC 30046 .......... .......... .......... .......... .......... .......... 155 AAGAGATTCA AAATGGTTGG GAAGTAATGC TCAGTTGTTA GACTTATTTA GCTCCACATA 30106 .......... .......... .......... .......... .......... .......... 155 GGCAAGTGTG AGGTTTATTA AACTTCTGAT ATGCCTTGGA AGGCAAATTA CTGACTGTTA 30166 .......... .......... .......... .......... .......... .......... 155 CTGCAGTAAA ATGGGGTTGA ATAGACTGAA TATCTTTAGA TGCAGAACAC AACTAGCATG 30226 .......... .......... .......... .......... .......... .......... 155 GGGTTGAGAT GCAGATGATT CATCAACTGA TCTGATTATG GGTTTCCTTA AATTACCTGC 30286 .......... .......... .......... .......... .......... .......... 155 ATGTTTCAAC TTTATATGGT TTCTTTAGTT ACTGTATTAG TATACTCCGT GGTTTCTCAT 30346 .......... .......... .......... .......... .......... .......... 155 TAAATATGAG GTAATCGGAA AGTTATACAC CCCTCCCTGG ATTTTTATTG TCTATTGATC 30406 .......... .......... .......... .......... .......... .......... 155 TAACGTTTTC TATGCAGAAG TCCCATGCGG TGGATGCGAG TGATGATGAG ATGGATGATG 30466 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......AAG TCCCATGCGG TGGATGCGAG TGATGATGAG ATGGATGATG 198 ATGAGAATGA TGCTAATATC AAAGAGACAG TTGAAGAAGA GGAGGAGCCT GAGATAATTG 30526 |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| ATGAGAATGA TGCTAATATC AAAGAGACAG CTGAAGAACA GGAGGAGCCT GAGATAATTG 258 AATCTGATAT TGAGCTTGAT GAGAGTGACA CTGTGGAACC TGACAATGAT GAGCCACAGA 30586 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| AATCTGATAT TGAGCTTGAT GAGAGTGACA CTGTGGAACC TGACTATGAT GAGCCACAGA 318 AGGTTTGCCA TCCGACTTAT TTGACATTTT TTCTGTTTTG GATTTTGAAG GTTCATGTTT 30646 || AG........ .......... .......... .......... .......... .......... 320 ATTTTTAACA TTTCAAATCT GTTTTTTCTA GATGGGAGAC CCTTCTGTGG AGGTGACTGA 30706 ||||||||| |||||||||| |||||||||| .......... .......... .......... .ATGGGAGAC CCTTCTGTGG AGGTGACTGA 349 AGAAAGCCGT GATGCTTCTC AGGAGTCCAA AGCTGAGGCC ATGGAAGCAA TTTCTGAAGG 30766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGAAAGCCGT GATGCTTCTC AGGAGTCCAA AGCTGAGGCC ATGGAAGCAA TTTCTGAAG. 408 TGACGTTGTT CAATGCCTAT ATATTGGCAT GCCTGTCTTC ATGTTTGCAA AATCAGTGGC 30826 .......... .......... .......... .......... .......... .......... 408 ATGATCCCTC TCACTTTTGT TGTTGGTGTT CATCAGGTAA GTTAGAAGAT GCAATTGAGC 30886 |||| |||||||||| |||||||||| .......... .......... .......... ......GTAA GTTAGAAGAT GCAATTGAGC 432 ATCTTACGAA GGCAGTTCTC CTCAATCCTA AATCAGCAAT TATGTATGCT ACTAGAGGTA 30946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATCTTACGAA GGCAGTTCTC CTCAATCCTA AATCAGCAAT TATGTATGCT ACTAGAG... 489 CGTTTACCAA ATGCTTTCAA AGTGGATTTA TTGATGTTGT TTTTTTTGTA ATTAGAGTAT 31006 .......... .......... .......... .......... .......... .......... 489 TCATTTGCAT TCAATGAATC ACTGTTTTTT CTTTTTGTCT TACACAGCTA GTGTTTATAT 31066 ||| |||||||||| .......... .......... .......... .......... .......CTA GTGTTTATAT 502 CAAGATGAAG AAGCCAAACG CTGCCATACG AGATGCAACT GCAGCATTGG AGGTTGTTCT 31126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CAAGATGAAG AAGCCAAACG CTGCCATACG AGATGCAACT GCAGCATTGG AG........ 554 TGCTCTCAGA TTTGCTTACC TGATGTTGTC TCTATTCTGT ATACATTTCT AATTATACAA 31186 .......... .......... .......... .......... .......... .......... 554 TTAGTTTTTG ATAAGTTCCC TCAATAATTG CAGTGGATGA CTTCATCAAG TAAAATATTA 31246 .......... .......... .......... .......... .......... .......... 554 AGAGAATGTC GTTGACTGAG TAATATTTCT TCTGGGCTTT ATATGGAAGA TACCCTGAAT 31306 .......... .......... .......... .......... .......... .......... 554 AATTTATCAG ACATATCTTC TTTACGTGCT CTTCCATTCT TGAGGCAGAC ATGGAGTCAT 31366 .......... .......... .......... .......... .......... .......... 554 GTAGGCATTA GATTTGCATG CTTCCTAGTT AATCCATTTT GGGCATGTGG TTGAATATAT 31426 .......... .......... .......... .......... .......... .......... 554 TATAGTCTTC CCAAATTGTT CTTCATTTTC CTATTTTGAA TGTCTAAATG TGGGTAGCTA 31486 .......... .......... .......... .......... .......... .......... 554 TAGAAATCAT TCTTGTTTTG ACCCCTGGTT AAATGCTTCT GGCAAACAGT GTATAAATAC 31546 .......... .......... .......... .......... .......... .......... 554 TAGGAACAAT TGAAAAAGTA GATAGCAAGA TTTTAGGAAA AAGATGTTTT CTTTTGTCCT 31606 .......... .......... .......... .......... .......... .......... 554 GCATCACAAT GGAAAAAGAA AAATTGGACC AATTTTGTGT TCAATATATC ATGGACTCTG 31666 .......... .......... .......... .......... .......... .......... 554 GGCTGTTCTT GCAGTTGAAT CCAGATTCTG CTAAAGGTTA CAAATCTCGT GGCATTGCCA 31726 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....TTGAAT CCAGATTCTG CTAAAGGTTA CAAATCTCGT GGCATTGCCA 600 GAGCCATGCT GGGACAGTGG GAGGCAGCTG CTAAGGATCT TCATGTGGCT TCGAAGCTGG 31786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCATGCT GGGACAGTGG GAGGCAGCTG CTAAGGATCT TCATGTGGCT TCGAAGCTGG 660 ACTATGATGA GGAAATAAGT GCTGTGCTTA AGAAGGTTGC TTCCTGTGAT ATATCTCATA 31846 |||||||||| |||||||||| |||||||||| ||||| ACTATGATGA GGAAATAAGT GCTGTGCTTA AGAAG..... .......... .......... 695 ACATCTACGT GATTAAGTTG TAGTGCTTGG TGGCCTTTTC TTTGTATAAA AAATTTATGG 31906 .......... .......... .......... .......... .......... .......... 695 TGGTACTATC AGCCCCCTGA ATATCTTGTT GAAGGGGCAA TTTTCACTTT TTGCAAGTGA 31966 .......... .......... .......... .......... .......... .......... 695 TTATGCGTTG TCTGTCACAG GTTGAGCCCA ATGCACATAG AATTGAAGAA CACCGCAGGA 32026 |||||||||| |||||||||| |||||||||| ||||||| || .......... .......... GTTGAGCCCA ATGCACATAG AATTGAAGAA CACCGCANGA 735 AATATGATAG GTTGCGCAAA GAACG 32051 |||||||||| |||||||||| ||||| AATATGATAG GTTGCGCAAA GAACG 760 hqPGS_C08HBa0060C12.1+_SGN-E543951+ (28787 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32051) ******************************************************************************** EST sequence 62 +strand 502 n (File: SGN-E305262+) 1 GATGAAGTTG AATCAACTGA AGCAATTCGT TGAACAGTGC AAATCCAATC CTTCCATTCT 61 CTCCGATCCT TCTCTTTCAT TTTTCCGTGA CTACATTGAG AATCTCGGTG CTAAACTTCC 121 TCCGGCTGCT TACGACACCG GCGATTACAA AGAGAAGTCC CATGCGGTGG ATGCGAGTGA 181 TGATGAGATG GATGATGATG AGAATGATGC TAATATCAAA GAGACAGTTG AAGAAGAGGA 241 GGAGCCTGAG ATAATTGAAT CTGATATTGA GCTTGATGAG AGTGACACTG TGGAACCTGA 301 CAATGATGAG CCACAGAAGA TGGGAGACCC TTCTGTGGAG GTGACTGAAG AAAGCCGTGA 361 TGCTTCTCAG GAGTCCAAAG CTGAGGCCAT GGAAGCAATT TCTGAAGGTA AGTTAGAAGA 421 TGCAATTGAG CATCTTACGA AGGCAGTTCT CCTCAATCCT AAATCAGCAA TTATGTATGC 481 TACTAGAGCT AGTGTTTATA TC Predicted gene structure (within gDNA segment 28188 to 31693): Exon 1 28788 28889 ( 102 n); cDNA 1 102 ( 102 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 29064 29115 ( 52 n); cDNA 103 154 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 3 30424 30588 ( 165 n); cDNA 155 319 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 30678 30765 ( 88 n); cDNA 320 407 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 30863 30943 ( 81 n); cDNA 408 488 ( 81 n); score: 1.000 Intron 5 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 0) Exon 6 31054 31067 ( 14 n); cDNA 489 502 ( 14 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E305262+ 1.000 502 1.000 C PGS_C08HBa0060C12.1+_SGN-E305262+ (28788 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31067) Alignment (genomic DNA sequence = upper lines): GATGAAGTTG AATCAACTGA AGCAATTCGT TGAACAGTGC AAATCCAATC CTTCCATTCT 28847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAAGTTG AATCAACTGA AGCAATTCGT TGAACAGTGC AAATCCAATC CTTCCATTCT 60 CTCCGATCCT TCTCTTTCAT TTTTCCGTGA CTACATTGAG AAGTAAGTAC GCTGTTTAAT 28907 |||||||||| |||||||||| |||||||||| |||||||||| || CTCCGATCCT TCTCTTTCAT TTTTCCGTGA CTACATTGAG AA........ .......... 102 TCCATTTGAG AACAGTATTT TTTGTTTTTT TCCATGATCT TATGCTATTA TGAACATATG 28967 .......... .......... .......... .......... .......... .......... 102 AATGGATGAT GGATCGCTAC TTTGCTTTCA GTTACTGTAG TTTTGGATGA GTGAACTTAA 29027 .......... .......... .......... .......... .......... .......... 102 TGTCGATTCA TTTGTTTGAT TTTTTTGTTT TTGCAGTCTC GGTGCTAAAC TTCCTCCGGC 29087 |||| |||||||||| |||||||||| .......... .......... .......... ......TCTC GGTGCTAAAC TTCCTCCGGC 126 TGCTTACGAC ACCGGCGATT ACAAAGAGGT ATTTTCCTTG CTTCATTATC TTCTTACTTA 29147 |||||||||| |||||||||| |||||||| TGCTTACGAC ACCGGCGATT ACAAAGAG.. .......... .......... .......... 154 GAATTAGTGT GATGTAATGG TCAATGACGT GGGTTGAAAA TAATGAGGGT CTGAGGTTCA 29207 .......... .......... .......... .......... .......... .......... 154 AATCCCAGCA CAATTAAAAA ATACTAGTTG ATTTCTTCCC CATTAGTTAC CTTGTACTTG 29267 .......... .......... .......... .......... .......... .......... 154 TTGGTGATTT CTTCCCCCAT TAGTTACCTT GTACTTGTTG CGGGTGGGAG GTGGCTTGTA 29327 .......... .......... .......... .......... .......... .......... 154 GCTCGTGGAA TTAGTCTGAG GTGAGGGCAA GTTGGTTTGG ACACCACGGT TGAAAATAAG 29387 .......... .......... .......... .......... .......... .......... 154 TAAATAAAAG ATTATTGTTT CTGATGAGTA AAGTTACTGT ACAATCACCA ATAGGGAATC 29447 .......... .......... .......... .......... .......... .......... 154 TTAATATAAT TAACCGGAAG TTTATTATTG TTAAAACTAA TAAAAGAAAC GCTCAAATCA 29507 .......... .......... .......... .......... .......... .......... 154 CTATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAC CAGGGATGTC 29567 .......... .......... .......... .......... .......... .......... 154 TCTTATTTAT GTCTAACGAC TACTCATGTG ATTTGGAATA GAGTTAGGGT ATTAAAATTC 29627 .......... .......... .......... .......... .......... .......... 154 TTCTAGGTCA AAGATTAAAG AGCTTCATTT AATATCATCT ATGAATATAC ACTAGGTTGC 29687 .......... .......... .......... .......... .......... .......... 154 ACAAAAAAGT TGTTCTTGGA TCAATCCAAA GCCCAACCTC CTCGGGTTCG AGGCCTAGGT 29747 .......... .......... .......... .......... .......... .......... 154 ATGGAAAAAT CCTTGGCAGG AGCACTAACC CTGAATGGGA ACCTACTCAG CACGAATACG 29807 .......... .......... .......... .......... .......... .......... 154 GATTAGTCGG ACTCCAATGT GTGTACCGGA CACTAGATGG GAAACAGCTC CCCCTCCAAC 29867 .......... .......... .......... .......... .......... .......... 154 CCCCAACACC CACCCCCAAA AAAAGGATCG ATGACTCTTA AAATCGTGTG TTTGGATATT 29927 .......... .......... .......... .......... .......... .......... 154 TGGATACTAC TGAACATGTC CAATTATTTT TCCGAACAAT TTAGTCCTAT CATATGAAAG 29987 .......... .......... .......... .......... .......... .......... 154 CAAGTTGTTT AAAAAATTCT GCGGTCTCAA GGAATTAAGA ATTAGTATAT TATAGAAGCA 30047 .......... .......... .......... .......... .......... .......... 154 AGAGATTCAA AATGGTTGGG AAGTAATGCT CAGTTGTTAG ACTTATTTAG CTCCACATAG 30107 .......... .......... .......... .......... .......... .......... 154 GCAAGTGTGA GGTTTATTAA ACTTCTGATA TGCCTTGGAA GGCAAATTAC TGACTGTTAC 30167 .......... .......... .......... .......... .......... .......... 154 TGCAGTAAAA TGGGGTTGAA TAGACTGAAT ATCTTTAGAT GCAGAACACA ACTAGCATGG 30227 .......... .......... .......... .......... .......... .......... 154 GGTTGAGATG CAGATGATTC ATCAACTGAT CTGATTATGG GTTTCCTTAA ATTACCTGCA 30287 .......... .......... .......... .......... .......... .......... 154 TGTTTCAACT TTATATGGTT TCTTTAGTTA CTGTATTAGT ATACTCCGTG GTTTCTCATT 30347 .......... .......... .......... .......... .......... .......... 154 AAATATGAGG TAATCGGAAA GTTATACACC CCTCCCTGGA TTTTTATTGT CTATTGATCT 30407 .......... .......... .......... .......... .......... .......... 154 AACGTTTTCT ATGCAGAAGT CCCATGCGGT GGATGCGAGT GATGATGAGA TGGATGATGA 30467 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AAGT CCCATGCGGT GGATGCGAGT GATGATGAGA TGGATGATGA 198 TGAGAATGAT GCTAATATCA AAGAGACAGT TGAAGAAGAG GAGGAGCCTG AGATAATTGA 30527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAATGAT GCTAATATCA AAGAGACAGT TGAAGAAGAG GAGGAGCCTG AGATAATTGA 258 ATCTGATATT GAGCTTGATG AGAGTGACAC TGTGGAACCT GACAATGATG AGCCACAGAA 30587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGATATT GAGCTTGATG AGAGTGACAC TGTGGAACCT GACAATGATG AGCCACAGAA 318 GGTTTGCCAT CCGACTTATT TGACATTTTT TCTGTTTTGG ATTTTGAAGG TTCATGTTTA 30647 | G......... .......... .......... .......... .......... .......... 319 TTTTTAACAT TTCAAATCTG TTTTTTCTAG ATGGGAGACC CTTCTGTGGA GGTGACTGAA 30707 |||||||||| |||||||||| |||||||||| .......... .......... .......... ATGGGAGACC CTTCTGTGGA GGTGACTGAA 349 GAAAGCCGTG ATGCTTCTCA GGAGTCCAAA GCTGAGGCCA TGGAAGCAAT TTCTGAAGGT 30767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GAAAGCCGTG ATGCTTCTCA GGAGTCCAAA GCTGAGGCCA TGGAAGCAAT TTCTGAAG.. 407 GACGTTGTTC AATGCCTATA TATTGGCATG CCTGTCTTCA TGTTTGCAAA ATCAGTGGCA 30827 .......... .......... .......... .......... .......... .......... 407 TGATCCCTCT CACTTTTGTT GTTGGTGTTC ATCAGGTAAG TTAGAAGATG CAATTGAGCA 30887 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTAAG TTAGAAGATG CAATTGAGCA 432 TCTTACGAAG GCAGTTCTCC TCAATCCTAA ATCAGCAATT ATGTATGCTA CTAGAGGTAC 30947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCTTACGAAG GCAGTTCTCC TCAATCCTAA ATCAGCAATT ATGTATGCTA CTAGAG.... 488 GTTTACCAAA TGCTTTCAAA GTGGATTTAT TGATGTTGTT TTTTTTGTAA TTAGAGTATT 31007 .......... .......... .......... .......... .......... .......... 488 CATTTGCATT CAATGAATCA CTGTTTTTTC TTTTTGTCTT ACACAGCTAG TGTTTATATC 31067 |||| |||||||||| .......... .......... .......... .......... ......CTAG TGTTTATATC 502 hqPGS_C08HBa0060C12.1+_SGN-E305262+ (28788 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31067) ******************************************************************************** EST sequence 95 +strand 542 n (File: SGN-E326839+) 1 GGATGCGAGT GATGATGAGA TGGATGATGA TGAGAATGAT GCTAATATCA AAGAGACAGT 61 TGAAGAAGAG GAGGAGCCTG AGATAATTGA ATCTGATATT GAGCTTGATG AGAGTGACAC 121 TGTGGAACCT GACAATGATG AGCCACAGAA GATGGGAGAC CCTTCTGTGG AGGTGACTGA 181 AGAAAGCCGT GATGCTTCTC AGGAGTCCAA AGCTGAGGCC ATGGAAGCAA TTTCTGAAGG 241 TAAGTTAGAA GATGCAATTG AGCATCTTAC GAAGGCAGTT CTCCTCAATC CTAAATCAGC 301 AATTATGTAT GCTACTAGAG CTAGTGTTTA TATCAAGATG AAGAAGCCAA ACGCTGCCAT 361 ACGAGATGCA ACTGCAGCAT TGGAGTTGAA TCCAGATTCT GCTAAAGGTT ACAAATCTCG 421 TGGCATTGCC AGAGCCATGC TGGGACAGTG GGAGGCAACT GCTAACGATC TTCATGTGGC 481 TTCGAAGCTG GACTATGATG AGGAAATAAG TGCTGTGCTT AAGAAGGGTT GAGCCCAATG 541 CA Predicted gene structure (within gDNA segment 29838 to 32582): Exon 1 30438 30588 ( 151 n); cDNA 1 151 ( 151 n); score: 1.000 Intron 1 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 30678 30765 ( 88 n); cDNA 152 239 ( 88 n); score: 1.000 Intron 2 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 30863 30943 ( 81 n); cDNA 240 320 ( 81 n); score: 1.000 Intron 3 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 31054 31118 ( 65 n); cDNA 321 385 ( 65 n); score: 1.000 Intron 4 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 1.00) Exon 5 31681 31821 ( 141 n); cDNA 386 527 ( 142 n); score: 0.968 Intron 5 31822 31986 ( 165 n); Pd: 0.812 (s: 0.95), Pa: 0.996 (s: 0) Exon 6 31987 32001 ( 15 n); cDNA 528 542 ( 15 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E326839+ 0.991 541 0.998 C PGS_C08HBa0060C12.1+_SGN-E326839+ (30438 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32001) Alignment (genomic DNA sequence = upper lines): GGATGCGAGT GATGATGAGA TGGATGATGA TGAGAATGAT GCTAATATCA AAGAGACAGT 30497 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGCGAGT GATGATGAGA TGGATGATGA TGAGAATGAT GCTAATATCA AAGAGACAGT 60 TGAAGAAGAG GAGGAGCCTG AGATAATTGA ATCTGATATT GAGCTTGATG AGAGTGACAC 30557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAGAG GAGGAGCCTG AGATAATTGA ATCTGATATT GAGCTTGATG AGAGTGACAC 120 TGTGGAACCT GACAATGATG AGCCACAGAA GGTTTGCCAT CCGACTTATT TGACATTTTT 30617 |||||||||| |||||||||| |||||||||| | TGTGGAACCT GACAATGATG AGCCACAGAA G......... .......... .......... 151 TCTGTTTTGG ATTTTGAAGG TTCATGTTTA TTTTTAACAT TTCAAATCTG TTTTTTCTAG 30677 .......... .......... .......... .......... .......... .......... 151 ATGGGAGACC CTTCTGTGGA GGTGACTGAA GAAAGCCGTG ATGCTTCTCA GGAGTCCAAA 30737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGAGACC CTTCTGTGGA GGTGACTGAA GAAAGCCGTG ATGCTTCTCA GGAGTCCAAA 211 GCTGAGGCCA TGGAAGCAAT TTCTGAAGGT GACGTTGTTC AATGCCTATA TATTGGCATG 30797 |||||||||| |||||||||| |||||||| GCTGAGGCCA TGGAAGCAAT TTCTGAAG.. .......... .......... .......... 239 CCTGTCTTCA TGTTTGCAAA ATCAGTGGCA TGATCCCTCT CACTTTTGTT GTTGGTGTTC 30857 .......... .......... .......... .......... .......... .......... 239 ATCAGGTAAG TTAGAAGATG CAATTGAGCA TCTTACGAAG GCAGTTCTCC TCAATCCTAA 30917 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTAAG TTAGAAGATG CAATTGAGCA TCTTACGAAG GCAGTTCTCC TCAATCCTAA 294 ATCAGCAATT ATGTATGCTA CTAGAGGTAC GTTTACCAAA TGCTTTCAAA GTGGATTTAT 30977 |||||||||| |||||||||| |||||| ATCAGCAATT ATGTATGCTA CTAGAG.... .......... .......... .......... 320 TGATGTTGTT TTTTTTGTAA TTAGAGTATT CATTTGCATT CAATGAATCA CTGTTTTTTC 31037 .......... .......... .......... .......... .......... .......... 320 TTTTTGTCTT ACACAGCTAG TGTTTATATC AAGATGAAGA AGCCAAACGC TGCCATACGA 31097 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......CTAG TGTTTATATC AAGATGAAGA AGCCAAACGC TGCCATACGA 364 GATGCAACTG CAGCATTGGA GGTTGTTCTT GCTCTCAGAT TTGCTTACCT GATGTTGTCT 31157 |||||||||| |||||||||| | GATGCAACTG CAGCATTGGA G......... .......... .......... .......... 385 CTATTCTGTA TACATTTCTA ATTATACAAT TAGTTTTTGA TAAGTTCCCT CAATAATTGC 31217 .......... .......... .......... .......... .......... .......... 385 AGTGGATGAC TTCATCAAGT AAAATATTAA GAGAATGTCG TTGACTGAGT AATATTTCTT 31277 .......... .......... .......... .......... .......... .......... 385 CTGGGCTTTA TATGGAAGAT ACCCTGAATA ATTTATCAGA CATATCTTCT TTACGTGCTC 31337 .......... .......... .......... .......... .......... .......... 385 TTCCATTCTT GAGGCAGACA TGGAGTCATG TAGGCATTAG ATTTGCATGC TTCCTAGTTA 31397 .......... .......... .......... .......... .......... .......... 385 ATCCATTTTG GGCATGTGGT TGAATATATT ATAGTCTTCC CAAATTGTTC TTCATTTTCC 31457 .......... .......... .......... .......... .......... .......... 385 TATTTTGAAT GTCTAAATGT GGGTAGCTAT AGAAATCATT CTTGTTTTGA CCCCTGGTTA 31517 .......... .......... .......... .......... .......... .......... 385 AATGCTTCTG GCAAACAGTG TATAAATACT AGGAACAATT GAAAAAGTAG ATAGCAAGAT 31577 .......... .......... .......... .......... .......... .......... 385 TTTAGGAAAA AGATGTTTTC TTTTGTCCTG CATCACAATG GAAAAAGAAA AATTGGACCA 31637 .......... .......... .......... .......... .......... .......... 385 ATTTTGTGTT CAATATATCA TGGACTCTGG GCTGTTCTTG CAGTTGAATC CAGATTCTGC 31697 ||||||| |||||||||| .......... .......... .......... .......... ...TTGAATC CAGATTCTGC 402 TAAAGGTTAC AAATCTCGTG GCATTGCCAG AGCCATGCTG GGACAGTGGG AGGCAGCTGC 31757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TAAAGGTTAC AAATCTCGTG GCATTGCCAG AGCCATGCTG GGACAGTGGG AGGCAACTGC 462 TAAGGATCTT CATGTGGCTT CGAAGCTGGA CTATGATGAG GAAATAAGTG CTGTGCTTAA 31817 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACGATCTT CATGTGGCTT CGAAGCTGGA CTATGATGAG GAAATAAGTG CTGTGCTTAA 522 GAA-GGTTGC TTCCTGTGAT ATATCTCATA ACATCTACGT GATTAAGTTG TAGTGCTTGG 31876 ||| | GAAGG..... .......... .......... .......... .......... .......... 527 TGGCCTTTTC TTTGTATAAA AAATTTATGG TGGTACTATC AGCCCCCTGA ATATCTTGTT 31936 .......... .......... .......... .......... .......... .......... 527 GAAGGGGCAA TTTTCACTTT TTGCAAGTGA TTATGCGTTG TCTGTCACAG GTTGAGCCCA 31996 |||||||||| .......... .......... .......... .......... .......... GTTGAGCCCA 537 ATGCA 32001 ||||| ATGCA 542 hqPGS_C08HBa0060C12.1+_SGN-E326839+ (30438 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32001) ******************************************************************************** EST sequence 65 +strand 530 n (File: SGN-E272704+) 1 TTGAATCTGA TATTGAGCTT GATGAGAGTG ACACTGTGGA ACCTGACAAT GATGAGCCAC 61 AGAAGATGGG AGACCCTTCT GTGGAGGTGA CTGAAGAAAG CCGTGATGCT TCTCAGGAGT 121 CCAAAGCTGA GGCCATGGAA GCAATTTCTG AAGGTAAGTT AGAAGATGCA ATTGAGCATC 181 TTACGAAGGC AGTTCTCCTC AATCCTAAAT CAGCAATTAT GTATGCTACT AGAGCTAGTG 241 TTTATATCAA GATGAAGAAG CCAAACGCTG CCATACGAGA TGCAACTGCA GCATTGGAGT 301 TGAATCCAGA TTCTGCTAAA GGTTACAAAT CTCGTGGCAT TGCCAGAGCC ATGCTGGGAC 361 AGTGGGAGGC AGCTGCTAAG GATCTTCATG TGGCTTCGAA GCTGGACTAT GATGAGGAAA 421 TAAGTGCTGT GCTTAAGAAG GTTGAGCCCA ATGCACATAG AATTGAAGAA CACCGCAGGA 481 AATATGATAG GTTGCGCAAA GAACGAGAAG ATAGAAAGAT TGAGCGTGAG Predicted gene structure (within gDNA segment 29924 to 32686): Exon 1 30524 30588 ( 65 n); cDNA 1 65 ( 65 n); score: 1.000 Intron 1 30589 30677 ( 89 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 30678 30765 ( 88 n); cDNA 66 153 ( 88 n); score: 1.000 Intron 2 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 30863 30943 ( 81 n); cDNA 154 234 ( 81 n); score: 1.000 Intron 3 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 31054 31118 ( 65 n); cDNA 235 299 ( 65 n); score: 1.000 Intron 4 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 1.00) Exon 5 31681 31821 ( 141 n); cDNA 300 440 ( 141 n); score: 1.000 Intron 5 31822 31986 ( 165 n); Pd: 0.812 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 6 31987 32076 ( 90 n); cDNA 441 530 ( 90 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E272704+ 1.000 530 1.000 C PGS_C08HBa0060C12.1+_SGN-E272704+ (30524 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32076) Alignment (genomic DNA sequence = upper lines): TTGAATCTGA TATTGAGCTT GATGAGAGTG ACACTGTGGA ACCTGACAAT GATGAGCCAC 30583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATCTGA TATTGAGCTT GATGAGAGTG ACACTGTGGA ACCTGACAAT GATGAGCCAC 60 AGAAGGTTTG CCATCCGACT TATTTGACAT TTTTTCTGTT TTGGATTTTG AAGGTTCATG 30643 ||||| AGAAG..... .......... .......... .......... .......... .......... 65 TTTATTTTTA ACATTTCAAA TCTGTTTTTT CTAGATGGGA GACCCTTCTG TGGAGGTGAC 30703 |||||| |||||||||| |||||||||| .......... .......... .......... ....ATGGGA GACCCTTCTG TGGAGGTGAC 91 TGAAGAAAGC CGTGATGCTT CTCAGGAGTC CAAAGCTGAG GCCATGGAAG CAATTTCTGA 30763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAAGC CGTGATGCTT CTCAGGAGTC CAAAGCTGAG GCCATGGAAG CAATTTCTGA 151 AGGTGACGTT GTTCAATGCC TATATATTGG CATGCCTGTC TTCATGTTTG CAAAATCAGT 30823 || AG........ .......... .......... .......... .......... .......... 153 GGCATGATCC CTCTCACTTT TGTTGTTGGT GTTCATCAGG TAAGTTAGAA GATGCAATTG 30883 | |||||||||| |||||||||| .......... .......... .......... .........G TAAGTTAGAA GATGCAATTG 174 AGCATCTTAC GAAGGCAGTT CTCCTCAATC CTAAATCAGC AATTATGTAT GCTACTAGAG 30943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATCTTAC GAAGGCAGTT CTCCTCAATC CTAAATCAGC AATTATGTAT GCTACTAGAG 234 GTACGTTTAC CAAATGCTTT CAAAGTGGAT TTATTGATGT TGTTTTTTTT GTAATTAGAG 31003 .......... .......... .......... .......... .......... .......... 234 TATTCATTTG CATTCAATGA ATCACTGTTT TTTCTTTTTG TCTTACACAG CTAGTGTTTA 31063 |||||||||| .......... .......... .......... .......... .......... CTAGTGTTTA 244 TATCAAGATG AAGAAGCCAA ACGCTGCCAT ACGAGATGCA ACTGCAGCAT TGGAGGTTGT 31123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATCAAGATG AAGAAGCCAA ACGCTGCCAT ACGAGATGCA ACTGCAGCAT TGGAG..... 299 TCTTGCTCTC AGATTTGCTT ACCTGATGTT GTCTCTATTC TGTATACATT TCTAATTATA 31183 .......... .......... .......... .......... .......... .......... 299 CAATTAGTTT TTGATAAGTT CCCTCAATAA TTGCAGTGGA TGACTTCATC AAGTAAAATA 31243 .......... .......... .......... .......... .......... .......... 299 TTAAGAGAAT GTCGTTGACT GAGTAATATT TCTTCTGGGC TTTATATGGA AGATACCCTG 31303 .......... .......... .......... .......... .......... .......... 299 AATAATTTAT CAGACATATC TTCTTTACGT GCTCTTCCAT TCTTGAGGCA GACATGGAGT 31363 .......... .......... .......... .......... .......... .......... 299 CATGTAGGCA TTAGATTTGC ATGCTTCCTA GTTAATCCAT TTTGGGCATG TGGTTGAATA 31423 .......... .......... .......... .......... .......... .......... 299 TATTATAGTC TTCCCAAATT GTTCTTCATT TTCCTATTTT GAATGTCTAA ATGTGGGTAG 31483 .......... .......... .......... .......... .......... .......... 299 CTATAGAAAT CATTCTTGTT TTGACCCCTG GTTAAATGCT TCTGGCAAAC AGTGTATAAA 31543 .......... .......... .......... .......... .......... .......... 299 TACTAGGAAC AATTGAAAAA GTAGATAGCA AGATTTTAGG AAAAAGATGT TTTCTTTTGT 31603 .......... .......... .......... .......... .......... .......... 299 CCTGCATCAC AATGGAAAAA GAAAAATTGG ACCAATTTTG TGTTCAATAT ATCATGGACT 31663 .......... .......... .......... .......... .......... .......... 299 CTGGGCTGTT CTTGCAGTTG AATCCAGATT CTGCTAAAGG TTACAAATCT CGTGGCATTG 31723 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......TTG AATCCAGATT CTGCTAAAGG TTACAAATCT CGTGGCATTG 342 CCAGAGCCAT GCTGGGACAG TGGGAGGCAG CTGCTAAGGA TCTTCATGTG GCTTCGAAGC 31783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAGCCAT GCTGGGACAG TGGGAGGCAG CTGCTAAGGA TCTTCATGTG GCTTCGAAGC 402 TGGACTATGA TGAGGAAATA AGTGCTGTGC TTAAGAAGGT TGCTTCCTGT GATATATCTC 31843 |||||||||| |||||||||| |||||||||| |||||||| TGGACTATGA TGAGGAAATA AGTGCTGTGC TTAAGAAG.. .......... .......... 440 ATAACATCTA CGTGATTAAG TTGTAGTGCT TGGTGGCCTT TTCTTTGTAT AAAAAATTTA 31903 .......... .......... .......... .......... .......... .......... 440 TGGTGGTACT ATCAGCCCCC TGAATATCTT GTTGAAGGGG CAATTTTCAC TTTTTGCAAG 31963 .......... .......... .......... .......... .......... .......... 440 TGATTATGCG TTGTCTGTCA CAGGTTGAGC CCAATGCACA TAGAATTGAA GAACACCGCA 32023 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTTGAGC CCAATGCACA TAGAATTGAA GAACACCGCA 477 GGAAATATGA TAGGTTGCGC AAAGAACGAG AAGATAGAAA GATTGAGCGT GAG 32076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| GGAAATATGA TAGGTTGCGC AAAGAACGAG AAGATAGAAA GATTGAGCGT GAG 530 hqPGS_C08HBa0060C12.1+_SGN-E272704+ (30524 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32076) ******************************************************************************** EST sequence 67 +strand 344 n (File: SGN-E217146+) 1 TCCTCCTAGG TGGAACCTGA CAATGATGAG CCACAGAAGA TGGGAGACCC TTCTGTGGAG 61 GTGACTGAAG AAAGCCGTGA TGCTTCTCAG GAGTCCAAAG CTGAGGCCAT GGAAGCAATT 121 TCTGAAGGTA AGTTAGAAGA TGCAATTGAG CATCTTACGA AGGCAGTTCT CCTCAATCCT 181 AAATCAGCAA TTATGTATGC TACTAGAGCT AGTGTTTATA TCAAGATGAA GAAGCCAAAC 241 GCTGCCATAC GAGATGCAAC TGCAGCATTG GAGTTGAATC CAGATTCTGC TAAAGGTTAC 301 AAATCTCGTG GCATTGCCAG AGCCATGCTG GGACAGTGGG AGGC Predicted gene structure (within gDNA segment 29869 to 32361): Exon 1 30559 30588 ( 30 n); cDNA 10 39 ( 30 n); score: 1.000 Intron 1 30589 30677 ( 89 n); Pd: 1.000 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 30678 30765 ( 88 n); cDNA 40 127 ( 88 n); score: 1.000 Intron 2 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 30863 30943 ( 81 n); cDNA 128 208 ( 81 n); score: 1.000 Intron 3 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 31054 31118 ( 65 n); cDNA 209 273 ( 65 n); score: 1.000 Intron 4 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 1.00) Exon 5 31681 31751 ( 71 n); cDNA 274 344 ( 71 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E217146+ 1.000 335 0.974 C PGS_C08HBa0060C12.1+_SGN-E217146+ (30559 30588,30678 30765,30863 30943,31054 31118,31681 31751) Alignment (genomic DNA sequence = upper lines): GTGGAACCTG ACAATGATGA GCCACAGAAG GTTTGCCATC CGACTTATTT GACATTTTTT 30618 |||||||||| |||||||||| |||||||||| GTGGAACCTG ACAATGATGA GCCACAGAAG .......... .......... .......... 39 CTGTTTTGGA TTTTGAAGGT TCATGTTTAT TTTTAACATT TCAAATCTGT TTTTTCTAGA 30678 | .......... .......... .......... .......... .......... .........A 40 TGGGAGACCC TTCTGTGGAG GTGACTGAAG AAAGCCGTGA TGCTTCTCAG GAGTCCAAAG 30738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAGACCC TTCTGTGGAG GTGACTGAAG AAAGCCGTGA TGCTTCTCAG GAGTCCAAAG 100 CTGAGGCCAT GGAAGCAATT TCTGAAGGTG ACGTTGTTCA ATGCCTATAT ATTGGCATGC 30798 |||||||||| |||||||||| ||||||| CTGAGGCCAT GGAAGCAATT TCTGAAG... .......... .......... .......... 127 CTGTCTTCAT GTTTGCAAAA TCAGTGGCAT GATCCCTCTC ACTTTTGTTG TTGGTGTTCA 30858 .......... .......... .......... .......... .......... .......... 127 TCAGGTAAGT TAGAAGATGC AATTGAGCAT CTTACGAAGG CAGTTCTCCT CAATCCTAAA 30918 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTAAGT TAGAAGATGC AATTGAGCAT CTTACGAAGG CAGTTCTCCT CAATCCTAAA 183 TCAGCAATTA TGTATGCTAC TAGAGGTACG TTTACCAAAT GCTTTCAAAG TGGATTTATT 30978 |||||||||| |||||||||| ||||| TCAGCAATTA TGTATGCTAC TAGAG..... .......... .......... .......... 208 GATGTTGTTT TTTTTGTAAT TAGAGTATTC ATTTGCATTC AATGAATCAC TGTTTTTTCT 31038 .......... .......... .......... .......... .......... .......... 208 TTTTGTCTTA CACAGCTAGT GTTTATATCA AGATGAAGAA GCCAAACGCT GCCATACGAG 31098 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CTAGT GTTTATATCA AGATGAAGAA GCCAAACGCT GCCATACGAG 253 ATGCAACTGC AGCATTGGAG GTTGTTCTTG CTCTCAGATT TGCTTACCTG ATGTTGTCTC 31158 |||||||||| |||||||||| ATGCAACTGC AGCATTGGAG .......... .......... .......... .......... 273 TATTCTGTAT ACATTTCTAA TTATACAATT AGTTTTTGAT AAGTTCCCTC AATAATTGCA 31218 .......... .......... .......... .......... .......... .......... 273 GTGGATGACT TCATCAAGTA AAATATTAAG AGAATGTCGT TGACTGAGTA ATATTTCTTC 31278 .......... .......... .......... .......... .......... .......... 273 TGGGCTTTAT ATGGAAGATA CCCTGAATAA TTTATCAGAC ATATCTTCTT TACGTGCTCT 31338 .......... .......... .......... .......... .......... .......... 273 TCCATTCTTG AGGCAGACAT GGAGTCATGT AGGCATTAGA TTTGCATGCT TCCTAGTTAA 31398 .......... .......... .......... .......... .......... .......... 273 TCCATTTTGG GCATGTGGTT GAATATATTA TAGTCTTCCC AAATTGTTCT TCATTTTCCT 31458 .......... .......... .......... .......... .......... .......... 273 ATTTTGAATG TCTAAATGTG GGTAGCTATA GAAATCATTC TTGTTTTGAC CCCTGGTTAA 31518 .......... .......... .......... .......... .......... .......... 273 ATGCTTCTGG CAAACAGTGT ATAAATACTA GGAACAATTG AAAAAGTAGA TAGCAAGATT 31578 .......... .......... .......... .......... .......... .......... 273 TTAGGAAAAA GATGTTTTCT TTTGTCCTGC ATCACAATGG AAAAAGAAAA ATTGGACCAA 31638 .......... .......... .......... .......... .......... .......... 273 TTTTGTGTTC AATATATCAT GGACTCTGGG CTGTTCTTGC AGTTGAATCC AGATTCTGCT 31698 |||||||| |||||||||| .......... .......... .......... .......... ..TTGAATCC AGATTCTGCT 291 AAAGGTTACA AATCTCGTGG CATTGCCAGA GCCATGCTGG GACAGTGGGA GGC 31751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AAAGGTTACA AATCTCGTGG CATTGCCAGA GCCATGCTGG GACAGTGGGA GGC 344 hqPGS_C08HBa0060C12.1+_SGN-E217146+ (30559 30588,30678 30765,30863 30943,31054 31118,31681 31751) ******************************************************************************** EST sequence 66 +strand 423 n (File: SGN-E217096+) 1 ACGGTTCTTG TTGGAACCTG ACAATGATGA GCCACAGAAG ATGGGAGACC CTTCTGTGGA 61 GGTGACTGAA GAAAGCCGTG ATGCTTCTCA GGAGTCCAAA GCTGAGGCCA TGGAAGCAAT 121 TTCTGAAGGT AAGTTAGAAG ATGCAATTGA GCATCTTACG AAGGCAGTTC TCCTCAATCC 181 TAAATCAGCA ATTATGTATG CTACTAGAGC TAGTGTTTAT ATCAAGATGA AGAAGCCAAA 241 CGCTGCCATA CGAGATGCAA CTGCAGCATT GGAGTTGAAT CCAGATTCTG CTAAAGGTTA 301 CAAATCTCGT GGCATTGCCA GAGCCATGCT GGGACAGTGG GAGGCAGCTG CTAAGGATCT 361 TCATGTGGCT TCGAAGCTGG ACTATGATGA GGAAATAAGT GCTGTGCTTA AGAAGGTTGA 421 GCC Predicted gene structure (within gDNA segment 29696 to 32475): Exon 1 30560 30588 ( 29 n); cDNA 12 40 ( 29 n); score: 1.000 Intron 1 30589 30677 ( 89 n); Pd: 1.000 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 30678 30765 ( 88 n); cDNA 41 128 ( 88 n); score: 1.000 Intron 2 30766 30862 ( 97 n); Pd: 0.768 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 30863 30943 ( 81 n); cDNA 129 209 ( 81 n); score: 1.000 Intron 3 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 31054 31118 ( 65 n); cDNA 210 274 ( 65 n); score: 1.000 Intron 4 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 1.00) Exon 5 31681 31821 ( 141 n); cDNA 275 415 ( 141 n); score: 1.000 Intron 5 31822 31986 ( 165 n); Pd: 0.812 (s: 1.00), Pa: 0.996 (s: 0) Exon 6 31987 31994 ( 8 n); cDNA 416 423 ( 8 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E217096+ 1.000 412 0.974 C PGS_C08HBa0060C12.1+_SGN-E217096+ (30560 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 31994) Alignment (genomic DNA sequence = upper lines): TGGAACCTGA CAATGATGAG CCACAGAAGG TTTGCCATCC GACTTATTTG ACATTTTTTC 30619 |||||||||| |||||||||| ||||||||| TGGAACCTGA CAATGATGAG CCACAGAAG. .......... .......... .......... 40 TGTTTTGGAT TTTGAAGGTT CATGTTTATT TTTAACATTT CAAATCTGTT TTTTCTAGAT 30679 || .......... .......... .......... .......... .......... ........AT 42 GGGAGACCCT TCTGTGGAGG TGACTGAAGA AAGCCGTGAT GCTTCTCAGG AGTCCAAAGC 30739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGACCCT TCTGTGGAGG TGACTGAAGA AAGCCGTGAT GCTTCTCAGG AGTCCAAAGC 102 TGAGGCCATG GAAGCAATTT CTGAAGGTGA CGTTGTTCAA TGCCTATATA TTGGCATGCC 30799 |||||||||| |||||||||| |||||| TGAGGCCATG GAAGCAATTT CTGAAG.... .......... .......... .......... 128 TGTCTTCATG TTTGCAAAAT CAGTGGCATG ATCCCTCTCA CTTTTGTTGT TGGTGTTCAT 30859 .......... .......... .......... .......... .......... .......... 128 CAGGTAAGTT AGAAGATGCA ATTGAGCATC TTACGAAGGC AGTTCTCCTC AATCCTAAAT 30919 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTAAGTT AGAAGATGCA ATTGAGCATC TTACGAAGGC AGTTCTCCTC AATCCTAAAT 185 CAGCAATTAT GTATGCTACT AGAGGTACGT TTACCAAATG CTTTCAAAGT GGATTTATTG 30979 |||||||||| |||||||||| |||| CAGCAATTAT GTATGCTACT AGAG...... .......... .......... .......... 209 ATGTTGTTTT TTTTGTAATT AGAGTATTCA TTTGCATTCA ATGAATCACT GTTTTTTCTT 31039 .......... .......... .......... .......... .......... .......... 209 TTTGTCTTAC ACAGCTAGTG TTTATATCAA GATGAAGAAG CCAAACGCTG CCATACGAGA 31099 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CTAGTG TTTATATCAA GATGAAGAAG CCAAACGCTG CCATACGAGA 255 TGCAACTGCA GCATTGGAGG TTGTTCTTGC TCTCAGATTT GCTTACCTGA TGTTGTCTCT 31159 |||||||||| ||||||||| TGCAACTGCA GCATTGGAG. .......... .......... .......... .......... 274 ATTCTGTATA CATTTCTAAT TATACAATTA GTTTTTGATA AGTTCCCTCA ATAATTGCAG 31219 .......... .......... .......... .......... .......... .......... 274 TGGATGACTT CATCAAGTAA AATATTAAGA GAATGTCGTT GACTGAGTAA TATTTCTTCT 31279 .......... .......... .......... .......... .......... .......... 274 GGGCTTTATA TGGAAGATAC CCTGAATAAT TTATCAGACA TATCTTCTTT ACGTGCTCTT 31339 .......... .......... .......... .......... .......... .......... 274 CCATTCTTGA GGCAGACATG GAGTCATGTA GGCATTAGAT TTGCATGCTT CCTAGTTAAT 31399 .......... .......... .......... .......... .......... .......... 274 CCATTTTGGG CATGTGGTTG AATATATTAT AGTCTTCCCA AATTGTTCTT CATTTTCCTA 31459 .......... .......... .......... .......... .......... .......... 274 TTTTGAATGT CTAAATGTGG GTAGCTATAG AAATCATTCT TGTTTTGACC CCTGGTTAAA 31519 .......... .......... .......... .......... .......... .......... 274 TGCTTCTGGC AAACAGTGTA TAAATACTAG GAACAATTGA AAAAGTAGAT AGCAAGATTT 31579 .......... .......... .......... .......... .......... .......... 274 TAGGAAAAAG ATGTTTTCTT TTGTCCTGCA TCACAATGGA AAAAGAAAAA TTGGACCAAT 31639 .......... .......... .......... .......... .......... .......... 274 TTTGTGTTCA ATATATCATG GACTCTGGGC TGTTCTTGCA GTTGAATCCA GATTCTGCTA 31699 ||||||||| |||||||||| .......... .......... .......... .......... .TTGAATCCA GATTCTGCTA 293 AAGGTTACAA ATCTCGTGGC ATTGCCAGAG CCATGCTGGG ACAGTGGGAG GCAGCTGCTA 31759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTTACAA ATCTCGTGGC ATTGCCAGAG CCATGCTGGG ACAGTGGGAG GCAGCTGCTA 353 AGGATCTTCA TGTGGCTTCG AAGCTGGACT ATGATGAGGA AATAAGTGCT GTGCTTAAGA 31819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATCTTCA TGTGGCTTCG AAGCTGGACT ATGATGAGGA AATAAGTGCT GTGCTTAAGA 413 AGGTTGCTTC CTGTGATATA TCTCATAACA TCTACGTGAT TAAGTTGTAG TGCTTGGTGG 31879 || AG........ .......... .......... .......... .......... .......... 415 CCTTTTCTTT GTATAAAAAA TTTATGGTGG TACTATCAGC CCCCTGAATA TCTTGTTGAA 31939 .......... .......... .......... .......... .......... .......... 415 GGGGCAATTT TCACTTTTTG CAAGTGATTA TGCGTTGTCT GTCACAGGTT GAGCC 31994 ||| ||||| .......... .......... .......... .......... .......GTT GAGCC 423 hqPGS_C08HBa0060C12.1+_SGN-E217096+ (30560 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 31994) ******************************************************************************** EST sequence 12 +strand 559 n (File: SGN-E304691+) 1 GGCCATGGAA GCAATTTCTG AAAGTAAGTT AGAAGATGCA ATTGAGCATC TTACGAAGGC 61 AGTTCTCCTC AATCCTAAAT CAGCAATTAT GTATGCTACT AGAGCTAGTG TTTATATCAA 121 GATGAAGAAG CCAAACGCTG CCATACGAGA TGCAACTGCA GCATTGGAGT TGAATCCAGA 181 TTCTGCTAAA GGTTACAAAT CTCGTGGCAT TGCCAGAGCC ATGCTGGGAC AGTGGGAGGC 241 AGCTGCTAAG GATCTTCATG TGGCTTCGAA GCTGGACTAT GATGAGGAAA TAAGTGCTGT 301 GCTTAAGAAG GTTGAGCCCA ATGCACATAG AATTGAAGAA CACCGCAGGA AATATGATAG 361 GTTGCGCAAA GAACGAGAAG ATAGAAAGAT TGAGCGTGAG AGACAACGAA GAAAGGCTGA 421 AGCTCAGGCT GCTTATGAAA AGGCCAAGAA GCAAGAAGAA TCATCAAGTA GGAGAGCTGG 481 TGGCATGCCC GGAGGCTTTC CTGGTGGCAT GCCCGGAGGC TTTCCTGGTG GCATGCCCGG 541 ATTTCCTGGT GGCATGCCC Predicted gene structure (within gDNA segment 30033 to 32963): Exon 1 30743 30765 ( 23 n); cDNA 1 23 ( 23 n); score: 0.957 Intron 1 30766 30862 ( 97 n); Pd: 0.768 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 30863 30943 ( 81 n); cDNA 24 104 ( 81 n); score: 1.000 Intron 2 30944 31053 ( 110 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 31054 31118 ( 65 n); cDNA 105 169 ( 65 n); score: 1.000 Intron 3 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 1.00) Exon 4 31681 31821 ( 141 n); cDNA 170 310 ( 141 n); score: 1.000 Intron 4 31822 31986 ( 165 n); Pd: 0.812 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 31987 32103 ( 117 n); cDNA 311 427 ( 117 n); score: 1.000 Intron 5 32104 32186 ( 83 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 32187 32318 ( 132 n); cDNA 428 559 ( 132 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E304691+ 1.000 559 1.000 C PGS_C08HBa0060C12.1+_SGN-E304691+ (30743 30765,30863 30943,31054 31118,31681 31821,31987 32103,32187 32318) Alignment (genomic DNA sequence = upper lines): GGCCATGGAA GCAATTTCTG AAGGTGACGT TGTTCAATGC CTATATATTG GCATGCCTGT 30802 |||||||||| |||||||||| || GGCCATGGAA GCAATTTCTG AAA....... .......... .......... .......... 23 CTTCATGTTT GCAAAATCAG TGGCATGATC CCTCTCACTT TTGTTGTTGG TGTTCATCAG 30862 .......... .......... .......... .......... .......... .......... 23 GTAAGTTAGA AGATGCAATT GAGCATCTTA CGAAGGCAGT TCTCCTCAAT CCTAAATCAG 30922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGTTAGA AGATGCAATT GAGCATCTTA CGAAGGCAGT TCTCCTCAAT CCTAAATCAG 83 CAATTATGTA TGCTACTAGA GGTACGTTTA CCAAATGCTT TCAAAGTGGA TTTATTGATG 30982 |||||||||| |||||||||| | CAATTATGTA TGCTACTAGA G......... .......... .......... .......... 104 TTGTTTTTTT TGTAATTAGA GTATTCATTT GCATTCAATG AATCACTGTT TTTTCTTTTT 31042 .......... .......... .......... .......... .......... .......... 104 GTCTTACACA GCTAGTGTTT ATATCAAGAT GAAGAAGCCA AACGCTGCCA TACGAGATGC 31102 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .CTAGTGTTT ATATCAAGAT GAAGAAGCCA AACGCTGCCA TACGAGATGC 153 AACTGCAGCA TTGGAGGTTG TTCTTGCTCT CAGATTTGCT TACCTGATGT TGTCTCTATT 31162 |||||||||| |||||| AACTGCAGCA TTGGAG.... .......... .......... .......... .......... 169 CTGTATACAT TTCTAATTAT ACAATTAGTT TTTGATAAGT TCCCTCAATA ATTGCAGTGG 31222 .......... .......... .......... .......... .......... .......... 169 ATGACTTCAT CAAGTAAAAT ATTAAGAGAA TGTCGTTGAC TGAGTAATAT TTCTTCTGGG 31282 .......... .......... .......... .......... .......... .......... 169 CTTTATATGG AAGATACCCT GAATAATTTA TCAGACATAT CTTCTTTACG TGCTCTTCCA 31342 .......... .......... .......... .......... .......... .......... 169 TTCTTGAGGC AGACATGGAG TCATGTAGGC ATTAGATTTG CATGCTTCCT AGTTAATCCA 31402 .......... .......... .......... .......... .......... .......... 169 TTTTGGGCAT GTGGTTGAAT ATATTATAGT CTTCCCAAAT TGTTCTTCAT TTTCCTATTT 31462 .......... .......... .......... .......... .......... .......... 169 TGAATGTCTA AATGTGGGTA GCTATAGAAA TCATTCTTGT TTTGACCCCT GGTTAAATGC 31522 .......... .......... .......... .......... .......... .......... 169 TTCTGGCAAA CAGTGTATAA ATACTAGGAA CAATTGAAAA AGTAGATAGC AAGATTTTAG 31582 .......... .......... .......... .......... .......... .......... 169 GAAAAAGATG TTTTCTTTTG TCCTGCATCA CAATGGAAAA AGAAAAATTG GACCAATTTT 31642 .......... .......... .......... .......... .......... .......... 169 GTGTTCAATA TATCATGGAC TCTGGGCTGT TCTTGCAGTT GAATCCAGAT TCTGCTAAAG 31702 || |||||||||| |||||||||| .......... .......... .......... ........TT GAATCCAGAT TCTGCTAAAG 191 GTTACAAATC TCGTGGCATT GCCAGAGCCA TGCTGGGACA GTGGGAGGCA GCTGCTAAGG 31762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACAAATC TCGTGGCATT GCCAGAGCCA TGCTGGGACA GTGGGAGGCA GCTGCTAAGG 251 ATCTTCATGT GGCTTCGAAG CTGGACTATG ATGAGGAAAT AAGTGCTGTG CTTAAGAAGG 31822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATCTTCATGT GGCTTCGAAG CTGGACTATG ATGAGGAAAT AAGTGCTGTG CTTAAGAAG. 310 TTGCTTCCTG TGATATATCT CATAACATCT ACGTGATTAA GTTGTAGTGC TTGGTGGCCT 31882 .......... .......... .......... .......... .......... .......... 310 TTTCTTTGTA TAAAAAATTT ATGGTGGTAC TATCAGCCCC CTGAATATCT TGTTGAAGGG 31942 .......... .......... .......... .......... .......... .......... 310 GCAATTTTCA CTTTTTGCAA GTGATTATGC GTTGTCTGTC ACAGGTTGAG CCCAATGCAC 32002 |||||| |||||||||| .......... .......... .......... .......... ....GTTGAG CCCAATGCAC 326 ATAGAATTGA AGAACACCGC AGGAAATATG ATAGGTTGCG CAAAGAACGA GAAGATAGAA 32062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAATTGA AGAACACCGC AGGAAATATG ATAGGTTGCG CAAAGAACGA GAAGATAGAA 386 AGATTGAGCG TGAGAGACAA CGAAGAAAGG CTGAAGCTCA GGTAACCCTT AGTTACTTAT 32122 |||||||||| |||||||||| |||||||||| |||||||||| | AGATTGAGCG TGAGAGACAA CGAAGAAAGG CTGAAGCTCA G......... .......... 427 TTGGTTTTAT GCTCGTGTGT GATCTTTTCT GCATGTTAAT ATTTGGTTAT GCCTTACATC 32182 .......... .......... .......... .......... .......... .......... 427 TCAGGCTGCT TATGAAAAGG CCAAGAAGCA AGAAGAATCA TCAAGTAGGA GAGCTGGTGG 32242 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GCTGCT TATGAAAAGG CCAAGAAGCA AGAAGAATCA TCAAGTAGGA GAGCTGGTGG 483 CATGCCCGGA GGCTTTCCTG GTGGCATGCC CGGAGGCTTT CCTGGTGGCA TGCCCGGATT 32302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCCCGGA GGCTTTCCTG GTGGCATGCC CGGAGGCTTT CCTGGTGGCA TGCCCGGATT 543 TCCTGGTGGC ATGCCC 32318 |||||||||| |||||| TCCTGGTGGC ATGCCC 559 hqPGS_C08HBa0060C12.1+_SGN-E304691+ (30743 30765,30863 30943,31054 31118,31681 31821,31987 32103,32187 32318) ******************************************************************************** EST sequence 17 +strand 496 n (File: SGN-E251925+) 1 TTATATCAAG ATGAAGAAGC CAAACGCTGC CATACGAGAT GCAACTGCAG CATTGGAGTT 61 GAATCCAGAT TCTGCTAAAG GTTACAAATC TCGTGGCATT GCCAGAGCCA TGCTGGGACA 121 GTGGGAGGCA GCTGCTAAGG ATCTTCATGT GGCTTCGAAG CTGGACTATG ATGAGGAAAT 181 AAGTGCTGTG CTTAAGAAGG TTGAGCCCAA TGCACATAGA ATTGAAGAAC ACCGCAGGAA 241 ATATGATAGG TTGCGCAAAG AACGAGAAGA TAGAAAGATT GAGCGTGAGA GACAACGAAG 301 AAAGGCTGAA GCTCAGGCTG CTTATGAAAA GGCCAAGAAG CAAGAAGAAT CATCAAGTAG 361 GAGAGCTGGT GGCATGCCCG GAGGCTTTCC TGGTGGCATG CCCGGAGGCT TTCCTGGTGG 421 CATGCCCGGA TTTCCTGGTG GCATGCCCGG AGGTTTTCCT GGTGGCATGC CTGGAGGCTT 481 TCCAGGTGGC ATGCCC Predicted gene structure (within gDNA segment 30461 to 33354): Exon 1 31061 31118 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000 Intron 1 31119 31680 ( 562 n); Pd: 0.950 (s: 1.00), Pa: 0.981 (s: 1.00) Exon 2 31681 31821 ( 141 n); cDNA 59 199 ( 141 n); score: 1.000 Intron 2 31822 31986 ( 165 n); Pd: 0.812 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 31987 32103 ( 117 n); cDNA 200 316 ( 117 n); score: 1.000 Intron 3 32104 32186 ( 83 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 32187 32366 ( 180 n); cDNA 317 496 ( 180 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E251925+ 1.000 496 1.000 C PGS_C08HBa0060C12.1+_SGN-E251925+ (31061 31118,31681 31821,31987 32103,32187 32366) Alignment (genomic DNA sequence = upper lines): TTATATCAAG ATGAAGAAGC CAAACGCTGC CATACGAGAT GCAACTGCAG CATTGGAGGT 31120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTATATCAAG ATGAAGAAGC CAAACGCTGC CATACGAGAT GCAACTGCAG CATTGGAG.. 58 TGTTCTTGCT CTCAGATTTG CTTACCTGAT GTTGTCTCTA TTCTGTATAC ATTTCTAATT 31180 .......... .......... .......... .......... .......... .......... 58 ATACAATTAG TTTTTGATAA GTTCCCTCAA TAATTGCAGT GGATGACTTC ATCAAGTAAA 31240 .......... .......... .......... .......... .......... .......... 58 ATATTAAGAG AATGTCGTTG ACTGAGTAAT ATTTCTTCTG GGCTTTATAT GGAAGATACC 31300 .......... .......... .......... .......... .......... .......... 58 CTGAATAATT TATCAGACAT ATCTTCTTTA CGTGCTCTTC CATTCTTGAG GCAGACATGG 31360 .......... .......... .......... .......... .......... .......... 58 AGTCATGTAG GCATTAGATT TGCATGCTTC CTAGTTAATC CATTTTGGGC ATGTGGTTGA 31420 .......... .......... .......... .......... .......... .......... 58 ATATATTATA GTCTTCCCAA ATTGTTCTTC ATTTTCCTAT TTTGAATGTC TAAATGTGGG 31480 .......... .......... .......... .......... .......... .......... 58 TAGCTATAGA AATCATTCTT GTTTTGACCC CTGGTTAAAT GCTTCTGGCA AACAGTGTAT 31540 .......... .......... .......... .......... .......... .......... 58 AAATACTAGG AACAATTGAA AAAGTAGATA GCAAGATTTT AGGAAAAAGA TGTTTTCTTT 31600 .......... .......... .......... .......... .......... .......... 58 TGTCCTGCAT CACAATGGAA AAAGAAAAAT TGGACCAATT TTGTGTTCAA TATATCATGG 31660 .......... .......... .......... .......... .......... .......... 58 ACTCTGGGCT GTTCTTGCAG TTGAATCCAG ATTCTGCTAA AGGTTACAAA TCTCGTGGCA 31720 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... TTGAATCCAG ATTCTGCTAA AGGTTACAAA TCTCGTGGCA 98 TTGCCAGAGC CATGCTGGGA CAGTGGGAGG CAGCTGCTAA GGATCTTCAT GTGGCTTCGA 31780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCAGAGC CATGCTGGGA CAGTGGGAGG CAGCTGCTAA GGATCTTCAT GTGGCTTCGA 158 AGCTGGACTA TGATGAGGAA ATAAGTGCTG TGCTTAAGAA GGTTGCTTCC TGTGATATAT 31840 |||||||||| |||||||||| |||||||||| |||||||||| | AGCTGGACTA TGATGAGGAA ATAAGTGCTG TGCTTAAGAA G......... .......... 199 CTCATAACAT CTACGTGATT AAGTTGTAGT GCTTGGTGGC CTTTTCTTTG TATAAAAAAT 31900 .......... .......... .......... .......... .......... .......... 199 TTATGGTGGT ACTATCAGCC CCCTGAATAT CTTGTTGAAG GGGCAATTTT CACTTTTTGC 31960 .......... .......... .......... .......... .......... .......... 199 AAGTGATTAT GCGTTGTCTG TCACAGGTTG AGCCCAATGC ACATAGAATT GAAGAACACC 32020 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTTG AGCCCAATGC ACATAGAATT GAAGAACACC 233 GCAGGAAATA TGATAGGTTG CGCAAAGAAC GAGAAGATAG AAAGATTGAG CGTGAGAGAC 32080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGGAAATA TGATAGGTTG CGCAAAGAAC GAGAAGATAG AAAGATTGAG CGTGAGAGAC 293 AACGAAGAAA GGCTGAAGCT CAGGTAACCC TTAGTTACTT ATTTGGTTTT ATGCTCGTGT 32140 |||||||||| |||||||||| ||| AACGAAGAAA GGCTGAAGCT CAG....... .......... .......... .......... 316 GTGATCTTTT CTGCATGTTA ATATTTGGTT ATGCCTTACA TCTCAGGCTG CTTATGAAAA 32200 |||| |||||||||| .......... .......... .......... .......... ......GCTG CTTATGAAAA 330 GGCCAAGAAG CAAGAAGAAT CATCAAGTAG GAGAGCTGGT GGCATGCCCG GAGGCTTTCC 32260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAAGAAG CAAGAAGAAT CATCAAGTAG GAGAGCTGGT GGCATGCCCG GAGGCTTTCC 390 TGGTGGCATG CCCGGAGGCT TTCCTGGTGG CATGCCCGGA TTTCCTGGTG GCATGCCCGG 32320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGCATG CCCGGAGGCT TTCCTGGTGG CATGCCCGGA TTTCCTGGTG GCATGCCCGG 450 AGGTTTTCCT GGTGGCATGC CTGGAGGCTT TCCAGGTGGC ATGCCC 32366 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGGTTTTCCT GGTGGCATGC CTGGAGGCTT TCCAGGTGGC ATGCCC 496 hqPGS_C08HBa0060C12.1+_SGN-E251925+ (31061 31118,31681 31821,31987 32103,32187 32366) ******************************************************************************** EST sequence 258 +strand 633 n (File: SGN-E323014+) 1 TGGCTTCGAA GCTGGACTAT GATGAGGAAA TAAGTGCTGT GCTTAAGAAG GTTGAGCCCA 61 ATGCACATAG AATTGAAGAA CACCGCAGGA AATATGATAG GTTGCGCAAA GAACGAGAAG 121 ATAGAAAGAT TGAGCGTGAG AGACAACGAA GAAAGGCTGA AGCTCAGGCT GCTTATGAAA 181 AGGCCAAGAA GCAAGAAGAA TCATCAAGTA GGAGAGCTGG TGGCATGCCC GGAGGCTTTC 241 CTGGTGGCAT GCCCGGAGGC TTTCCTGGTG GCATGCCCGG ATTTCCTGGT GGCATGCCCG 301 GAGGTTTTCC TGGTGGCATG CCTGGAGGCT TTCCAGGTGG CATGCCCGGA GGCTTTCCAG 361 GGGGTATGCC TGGGTCTGCA CCTGGAGGAA TGCCCGGAGG CATGCCTGGG GCTGCACCTG 421 GAGGAATGCC CGGTAACATG GACTACAGCA AAATACTGAA TGACCCTGAA TTAATGGCGG 481 CATTCAAGGA TCCAGATGTC ATGGCTGCAC TGCAAGATGT GATGAAGAAC CCAGCTAATT 541 TGGCCAAGCA TCAAGGAAAT CCTAAGATTG CTCCTATTAT TGCAAAAATG ATGGGCAAGT 601 TTGCTGGAAA TAATTGAGAG CTTTTGGGAT TTT Predicted gene structure (within gDNA segment 31172 to 34341): Exon 1 31772 31821 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 31822 31986 ( 165 n); Pd: 0.812 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 31987 32103 ( 117 n); cDNA 51 167 ( 117 n); score: 1.000 Intron 2 32104 32186 ( 83 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 32187 32480 ( 294 n); cDNA 168 461 ( 294 n); score: 1.000 Intron 3 32481 32686 ( 206 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 32687 32744 ( 58 n); cDNA 462 519 ( 58 n); score: 1.000 Intron 4 32745 33617 ( 873 n); Pd: 0.947 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 5 33618 33731 ( 114 n); cDNA 520 633 ( 114 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E323014+ 1.000 633 1.000 C PGS_C08HBa0060C12.1+_SGN-E323014+ (31772 31821,31987 32103,32187 32480,32687 32744,33618 33731) Alignment (genomic DNA sequence = upper lines): TGGCTTCGAA GCTGGACTAT GATGAGGAAA TAAGTGCTGT GCTTAAGAAG GTTGCTTCCT 31831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTTCGAA GCTGGACTAT GATGAGGAAA TAAGTGCTGT GCTTAAGAAG .......... 50 GTGATATATC TCATAACATC TACGTGATTA AGTTGTAGTG CTTGGTGGCC TTTTCTTTGT 31891 .......... .......... .......... .......... .......... .......... 50 ATAAAAAATT TATGGTGGTA CTATCAGCCC CCTGAATATC TTGTTGAAGG GGCAATTTTC 31951 .......... .......... .......... .......... .......... .......... 50 ACTTTTTGCA AGTGATTATG CGTTGTCTGT CACAGGTTGA GCCCAATGCA CATAGAATTG 32011 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTTGA GCCCAATGCA CATAGAATTG 75 AAGAACACCG CAGGAAATAT GATAGGTTGC GCAAAGAACG AGAAGATAGA AAGATTGAGC 32071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACACCG CAGGAAATAT GATAGGTTGC GCAAAGAACG AGAAGATAGA AAGATTGAGC 135 GTGAGAGACA ACGAAGAAAG GCTGAAGCTC AGGTAACCCT TAGTTACTTA TTTGGTTTTA 32131 |||||||||| |||||||||| |||||||||| || GTGAGAGACA ACGAAGAAAG GCTGAAGCTC AG........ .......... .......... 167 TGCTCGTGTG TGATCTTTTC TGCATGTTAA TATTTGGTTA TGCCTTACAT CTCAGGCTGC 32191 ||||| .......... .......... .......... .......... .......... .....GCTGC 172 TTATGAAAAG GCCAAGAAGC AAGAAGAATC ATCAAGTAGG AGAGCTGGTG GCATGCCCGG 32251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGAAAAG GCCAAGAAGC AAGAAGAATC ATCAAGTAGG AGAGCTGGTG GCATGCCCGG 232 AGGCTTTCCT GGTGGCATGC CCGGAGGCTT TCCTGGTGGC ATGCCCGGAT TTCCTGGTGG 32311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTTTCCT GGTGGCATGC CCGGAGGCTT TCCTGGTGGC ATGCCCGGAT TTCCTGGTGG 292 CATGCCCGGA GGTTTTCCTG GTGGCATGCC TGGAGGCTTT CCAGGTGGCA TGCCCGGAGG 32371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCCCGGA GGTTTTCCTG GTGGCATGCC TGGAGGCTTT CCAGGTGGCA TGCCCGGAGG 352 CTTTCCAGGG GGTATGCCTG GGTCTGCACC TGGAGGAATG CCCGGAGGCA TGCCTGGGGC 32431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCCAGGG GGTATGCCTG GGTCTGCACC TGGAGGAATG CCCGGAGGCA TGCCTGGGGC 412 TGCACCTGGA GGAATGCCCG GTAACATGGA CTACAGCAAA ATACTGAATG TAAGTAAATC 32491 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCACCTGGA GGAATGCCCG GTAACATGGA CTACAGCAAA ATACTGAAT. .......... 461 TACTTTTGTA TGTTTACTTT GAAACAAATT ATGGTCTTAA TATAAATGTT TGAACAAAGG 32551 .......... .......... .......... .......... .......... .......... 461 TATTATCTTA GGTGAAGACT AATTTCAAAT AAAAAAGAAA AATCTTGTAT AGTTTTTTGT 32611 .......... .......... .......... .......... .......... .......... 461 AGAATATGAT TCTTTTAAGT CATTTTTTGT CCATTGCAAG GAGATTAAAA TTTCCTTTTT 32671 .......... .......... .......... .......... .......... .......... 461 GTTTGGCTGG AGCAGGACCC TGAATTAATG GCGGCATTCA AGGATCCAGA TGTCATGGCT 32731 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GACCC TGAATTAATG GCGGCATTCA AGGATCCAGA TGTCATGGCT 506 GCACTGCAAG ATGGTACTTT CCTTTTTGTC CTCACCTCTT AGCCTGTCTA TTTTGCTTTG 32791 |||||||||| ||| GCACTGCAAG ATG....... .......... .......... .......... .......... 519 ATAATTAAGA CATTTCATTT CTTGACAAGT GATCCAGCTG TTTCACTTGA AGATAATTAT 32851 .......... .......... .......... .......... .......... .......... 519 CAATTATCAC ATATATTTAC TATGTGCTCT GCTCTAAAGT TCACAATATC TTTGCAACAT 32911 .......... .......... .......... .......... .......... .......... 519 ATCAATCTGT TGAATGACAA ATGTATATGC TTTATATTTT GGAACATCTC CTTATCATGC 32971 .......... .......... .......... .......... .......... .......... 519 TTGTTAGTGT CTGATGATTA AAAACCACAT GCAAGTATCA ACACGGTATA AACATGGTAA 33031 .......... .......... .......... .......... .......... .......... 519 GGGAAATTGA TGCTATCACC AGCTTATTAG CTACCAGTCC AATCGGTGGA AGTTATTAGA 33091 .......... .......... .......... .......... .......... .......... 519 AACATCGCCT TTTTGTTCTA GTTAAAAAAT TGAGCACCTC CAATAAATTT TTTCTTCACT 33151 .......... .......... .......... .......... .......... .......... 519 GTGTTACCTT AGTACATATA TGCCACTTGA TAGTACCTGT CCACAAGCTG CTTGATTGTT 33211 .......... .......... .......... .......... .......... .......... 519 ATGTATCTCC TATATGGATA TCTAATTAAT TGCAACAACA AATAGTCAAG TATGCTATTA 33271 .......... .......... .......... .......... .......... .......... 519 ATTACAGACA AACAAAATAA ATTTGGCTAG GAGTATGTAA ACATATTCTC TCCATGTCTT 33331 .......... .......... .......... .......... .......... .......... 519 TGCTTGTTCT TTTTCTCACT AAGCTTTTGA AAGAGTACAT AGACTTGGTA CTTTTCCATT 33391 .......... .......... .......... .......... .......... .......... 519 ATTTGAGTAA AGCAGAAGAA GATTGACAGT TGTGCTAAAG TATAGCTAGG ATTATATATA 33451 .......... .......... .......... .......... .......... .......... 519 TTGTTTCTAG CAAGATTAGA ACATAATTGC TGATAAATTG CCTATAGTAA CTTGCATAGA 33511 .......... .......... .......... .......... .......... .......... 519 TTTGGAAAAT CACATCCCTG TAGACTTAAT GTTGCACATA CTATAGATGT TTTGAGAGAC 33571 .......... .......... .......... .......... .......... .......... 519 ACTAGTTTCT TTGTCCGCTT ACTGAATGTG GCCTGGTATT TTGCAGTGAT GAAGAACCCA 33631 |||| |||||||||| .......... .......... .......... .......... ......TGAT GAAGAACCCA 533 GCTAATTTGG CCAAGCATCA AGGAAATCCT AAGATTGCTC CTATTATTGC AAAAATGATG 33691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAATTTGG CCAAGCATCA AGGAAATCCT AAGATTGCTC CTATTATTGC AAAAATGATG 593 GGCAAGTTTG CTGGAAATAA TTGAGAGCTT TTGGGATTTT 33731 |||||||||| |||||||||| |||||||||| |||||||||| GGCAAGTTTG CTGGAAATAA TTGAGAGCTT TTGGGATTTT 633 hqPGS_C08HBa0060C12.1+_SGN-E323014+ (31772 31821,31987 32103,32187 32480,32687 32744,33618 33731) ******************************************************************************** EST sequence 384 -strand 758 n (File: SGN-E543950-) 1 AAATATGATA GGTTGCGCAA AGAACGAGAA GATAGAATGA TTGAGCGTGA GAGACAACGA 61 AGAAAGGCTG AAGCTCAGGC TGCTTATGAA AAGGCCAAGA AGCAAGAAGA ATCATCAAGT 121 AGGAGAGCTG GTGGCATGCC CGGAGGCTTT CCTGGTGGCA TGCCCGGAGG CTTTCCTGGT 181 GGCATGCCCG GATTTCCTGG TGGCATGCCC GGAGGTTTTC CTGGTGGCAT GCCTGGAGGC 241 TTTCCAGGTG GCATGCCCGG AGGCTTTCCA GGGGGTATGC CTGGGTCTGC ACCTGGAGGA 301 ATGCCCGGAG GCATGCCTGG GGCTGCACCT GGAGGAATGC CCGGTAACAT GGACTACAGC 361 AAAATACTGA ATGACCCTGA ATTAATGGCG GCATTCAAGG ATCCAGATGT CATGGCTGCA 421 CTGCAAGATG TGATGAAGAA CCCAGCTAAT TTGGCCAAGC ATCAAGGAAA TCCTAAGATT 481 GCTCCTATTA TTGCAAAAAT GATGGGCAAG TTTGCTGGAA ATAATTGAGA GCTTTTGGGA 541 TTTTGTCCGT AGGAATTTCT AGAGTTTGAT AGAGAACATG TTGTTTACCG TAAGCTTGTT 601 TTTATCGAGT ATAAAGTCAT TCTCCAAGAT TGTGTCTAAT CCAAGTTTAG TTTCAAACTA 661 CAGCTGTCTT CTTTTCTTAT AGATTTGTTA TTGTTATGTG TATCAACTAT TTTTCCTTCT 721 GGTGACTGAT GTTTTGGTAT GCAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 31416 to 34644): Exon 1 32026 32103 ( 78 n); cDNA 1 78 ( 78 n); score: 0.987 Intron 1 32104 32186 ( 83 n); Pd: 0.999 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 2 32187 32480 ( 294 n); cDNA 79 372 ( 294 n); score: 1.000 Intron 2 32481 32686 ( 206 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 32687 32744 ( 58 n); cDNA 373 430 ( 58 n); score: 1.000 Intron 3 32745 33617 ( 873 n); Pd: 0.947 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 4 33618 33934 ( 317 n); cDNA 431 747 ( 317 n); score: 1.000 PPA cDNA 748 758 MATCH C08HBa0060C12.1+ SGN-E543950- 0.999 747 0.985 C PGS_C08HBa0060C12.1+_SGN-E543950- (32026 32103,32187 32480,32687 32744,33618 33934) Alignment (genomic DNA sequence = upper lines): AAATATGATA GGTTGCGCAA AGAACGAGAA GATAGAAAGA TTGAGCGTGA GAGACAACGA 32085 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| AAATATGATA GGTTGCGCAA AGAACGAGAA GATAGAATGA TTGAGCGTGA GAGACAACGA 60 AGAAAGGCTG AAGCTCAGGT AACCCTTAGT TACTTATTTG GTTTTATGCT CGTGTGTGAT 32145 |||||||||| |||||||| AGAAAGGCTG AAGCTCAG.. .......... .......... .......... .......... 78 CTTTTCTGCA TGTTAATATT TGGTTATGCC TTACATCTCA GGCTGCTTAT GAAAAGGCCA 32205 ||||||||| |||||||||| .......... .......... .......... .......... .GCTGCTTAT GAAAAGGCCA 97 AGAAGCAAGA AGAATCATCA AGTAGGAGAG CTGGTGGCAT GCCCGGAGGC TTTCCTGGTG 32265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCAAGA AGAATCATCA AGTAGGAGAG CTGGTGGCAT GCCCGGAGGC TTTCCTGGTG 157 GCATGCCCGG AGGCTTTCCT GGTGGCATGC CCGGATTTCC TGGTGGCATG CCCGGAGGTT 32325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGCCCGG AGGCTTTCCT GGTGGCATGC CCGGATTTCC TGGTGGCATG CCCGGAGGTT 217 TTCCTGGTGG CATGCCTGGA GGCTTTCCAG GTGGCATGCC CGGAGGCTTT CCAGGGGGTA 32385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTGGTGG CATGCCTGGA GGCTTTCCAG GTGGCATGCC CGGAGGCTTT CCAGGGGGTA 277 TGCCTGGGTC TGCACCTGGA GGAATGCCCG GAGGCATGCC TGGGGCTGCA CCTGGAGGAA 32445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTGGGTC TGCACCTGGA GGAATGCCCG GAGGCATGCC TGGGGCTGCA CCTGGAGGAA 337 TGCCCGGTAA CATGGACTAC AGCAAAATAC TGAATGTAAG TAAATCTACT TTTGTATGTT 32505 |||||||||| |||||||||| |||||||||| ||||| TGCCCGGTAA CATGGACTAC AGCAAAATAC TGAAT..... .......... .......... 372 TACTTTGAAA CAAATTATGG TCTTAATATA AATGTTTGAA CAAAGGTATT ATCTTAGGTG 32565 .......... .......... .......... .......... .......... .......... 372 AAGACTAATT TCAAATAAAA AAGAAAAATC TTGTATAGTT TTTTGTAGAA TATGATTCTT 32625 .......... .......... .......... .......... .......... .......... 372 TTAAGTCATT TTTTGTCCAT TGCAAGGAGA TTAAAATTTC CTTTTTGTTT GGCTGGAGCA 32685 .......... .......... .......... .......... .......... .......... 372 GGACCCTGAA TTAATGGCGG CATTCAAGGA TCCAGATGTC ATGGCTGCAC TGCAAGATGG 32745 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| .GACCCTGAA TTAATGGCGG CATTCAAGGA TCCAGATGTC ATGGCTGCAC TGCAAGATG. 430 TACTTTCCTT TTTGTCCTCA CCTCTTAGCC TGTCTATTTT GCTTTGATAA TTAAGACATT 32805 .......... .......... .......... .......... .......... .......... 430 TCATTTCTTG ACAAGTGATC CAGCTGTTTC ACTTGAAGAT AATTATCAAT TATCACATAT 32865 .......... .......... .......... .......... .......... .......... 430 ATTTACTATG TGCTCTGCTC TAAAGTTCAC AATATCTTTG CAACATATCA ATCTGTTGAA 32925 .......... .......... .......... .......... .......... .......... 430 TGACAAATGT ATATGCTTTA TATTTTGGAA CATCTCCTTA TCATGCTTGT TAGTGTCTGA 32985 .......... .......... .......... .......... .......... .......... 430 TGATTAAAAA CCACATGCAA GTATCAACAC GGTATAAACA TGGTAAGGGA AATTGATGCT 33045 .......... .......... .......... .......... .......... .......... 430 ATCACCAGCT TATTAGCTAC CAGTCCAATC GGTGGAAGTT ATTAGAAACA TCGCCTTTTT 33105 .......... .......... .......... .......... .......... .......... 430 GTTCTAGTTA AAAAATTGAG CACCTCCAAT AAATTTTTTC TTCACTGTGT TACCTTAGTA 33165 .......... .......... .......... .......... .......... .......... 430 CATATATGCC ACTTGATAGT ACCTGTCCAC AAGCTGCTTG ATTGTTATGT ATCTCCTATA 33225 .......... .......... .......... .......... .......... .......... 430 TGGATATCTA ATTAATTGCA ACAACAAATA GTCAAGTATG CTATTAATTA CAGACAAACA 33285 .......... .......... .......... .......... .......... .......... 430 AAATAAATTT GGCTAGGAGT ATGTAAACAT ATTCTCTCCA TGTCTTTGCT TGTTCTTTTT 33345 .......... .......... .......... .......... .......... .......... 430 CTCACTAAGC TTTTGAAAGA GTACATAGAC TTGGTACTTT TCCATTATTT GAGTAAAGCA 33405 .......... .......... .......... .......... .......... .......... 430 GAAGAAGATT GACAGTTGTG CTAAAGTATA GCTAGGATTA TATATATTGT TTCTAGCAAG 33465 .......... .......... .......... .......... .......... .......... 430 ATTAGAACAT AATTGCTGAT AAATTGCCTA TAGTAACTTG CATAGATTTG GAAAATCACA 33525 .......... .......... .......... .......... .......... .......... 430 TCCCTGTAGA CTTAATGTTG CACATACTAT AGATGTTTTG AGAGACACTA GTTTCTTTGT 33585 .......... .......... .......... .......... .......... .......... 430 CCGCTTACTG AATGTGGCCT GGTATTTTGC AGTGATGAAG AACCCAGCTA ATTTGGCCAA 33645 |||||||| |||||||||| |||||||||| .......... .......... .......... ..TGATGAAG AACCCAGCTA ATTTGGCCAA 458 GCATCAAGGA AATCCTAAGA TTGCTCCTAT TATTGCAAAA ATGATGGGCA AGTTTGCTGG 33705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCAAGGA AATCCTAAGA TTGCTCCTAT TATTGCAAAA ATGATGGGCA AGTTTGCTGG 518 AAATAATTGA GAGCTTTTGG GATTTTGTCC GTAGGAATTT CTAGAGTTTG ATAGAGAACA 33765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAATTGA GAGCTTTTGG GATTTTGTCC GTAGGAATTT CTAGAGTTTG ATAGAGAACA 578 TGTTGTTTAC CGTAAGCTTG TTTTTATCGA GTATAAAGTC ATTCTCCAAG ATTGTGTCTA 33825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTTTAC CGTAAGCTTG TTTTTATCGA GTATAAAGTC ATTCTCCAAG ATTGTGTCTA 638 ATCCAAGTTT AGTTTCAAAC TACAGCTGTC TTCTTTTCTT ATAGATTTGT TATTGTTATG 33885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAAGTTT AGTTTCAAAC TACAGCTGTC TTCTTTTCTT ATAGATTTGT TATTGTTATG 698 TGTATCAACT ATTTTTCCTT CTGGTGACTG ATGTTTTGGT ATGCAAAAA 33934 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGTATCAACT ATTTTTCCTT CTGGTGACTG ATGTTTTGGT ATGCAAAAA 747 hqPGS_C08HBa0060C12.1+_SGN-E543950- (32026 32103,32187 32480,32687 32744,33618 33934) ******************************************************************************** EST sequence 274 +strand 646 n (File: SGN-E284029+) 1 TGGTGGCATG CCCGGAGGCT TTCCTGGTGG CATGCCCGGA GGCTTTCCTG GTGGCATGCC 61 CGGATTTCCT GGTGGCATGC CCGGAGGTTT TCCTGGTGGC ATGCCTGGAG GCTTTCCAGG 121 TGGCATGCCC GGAGGCTTTC CAGGGGGTAT GCCTGGGTCT GCACCTGGAG GAATGCCCGG 181 AGGCATGCCT GGGGCTGCAC CTGGAGGAAT GCCCGGTAAC ATGGACTACA GCAAAATACT 241 GAATGACCCT GAATTAATGG CGGCATTCAA GGATCCAGAT GTCATGGCTG CACTGCAAGA 301 TGTGATGAAG AACCCAGCTA ATTTGGCCAA GCATCAAGGA AATCCTAAGA TTGCTCCTAT 361 TATTGCAAAA ATGATGGGCA AGTTTGCTGG AAATAATTGA GAGCTTTTGG GATTTTGTCC 421 GTAGGAATTT CTAGAGTTTG ATAGAGAACA TGTTGTTTAC CGTAAGCTTG TTTTTATCGA 481 GTATAAAGTC ATTCTCCAAG ATTGTGTCTA ATCCAAGTTT AGTTTCAAAC TACAGCTGTC 541 TTCTTTTCTT ATAGATTTGN TATTGGTATG TGTATCAACT ATTTTTCCTT CTGGTGACTG 601 ATGTTTTGGT ATGCAAAAAC TGGTTTCTAT CTGAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 31001 to 37560): Exon 1 32237 32480 ( 244 n); cDNA 1 244 ( 244 n); score: 1.000 Intron 1 32481 32686 ( 206 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 32687 32744 ( 58 n); cDNA 245 302 ( 58 n); score: 1.000 Intron 2 32745 33617 ( 873 n); Pd: 0.947 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 3 33618 33948 ( 331 n); cDNA 303 633 ( 331 n); score: 0.994 PPA cDNA 634 646 MATCH C08HBa0060C12.1+ SGN-E284029+ 0.997 633 0.980 C PGS_C08HBa0060C12.1+_SGN-E284029+ (32237 32480,32687 32744,33618 33948) Alignment (genomic DNA sequence = upper lines): TGGTGGCATG CCCGGAGGCT TTCCTGGTGG CATGCCCGGA GGCTTTCCTG GTGGCATGCC 32296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGCATG CCCGGAGGCT TTCCTGGTGG CATGCCCGGA GGCTTTCCTG GTGGCATGCC 60 CGGATTTCCT GGTGGCATGC CCGGAGGTTT TCCTGGTGGC ATGCCTGGAG GCTTTCCAGG 32356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATTTCCT GGTGGCATGC CCGGAGGTTT TCCTGGTGGC ATGCCTGGAG GCTTTCCAGG 120 TGGCATGCCC GGAGGCTTTC CAGGGGGTAT GCCTGGGTCT GCACCTGGAG GAATGCCCGG 32416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCATGCCC GGAGGCTTTC CAGGGGGTAT GCCTGGGTCT GCACCTGGAG GAATGCCCGG 180 AGGCATGCCT GGGGCTGCAC CTGGAGGAAT GCCCGGTAAC ATGGACTACA GCAAAATACT 32476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCATGCCT GGGGCTGCAC CTGGAGGAAT GCCCGGTAAC ATGGACTACA GCAAAATACT 240 GAATGTAAGT AAATCTACTT TTGTATGTTT ACTTTGAAAC AAATTATGGT CTTAATATAA 32536 |||| GAAT...... .......... .......... .......... .......... .......... 244 ATGTTTGAAC AAAGGTATTA TCTTAGGTGA AGACTAATTT CAAATAAAAA AGAAAAATCT 32596 .......... .......... .......... .......... .......... .......... 244 TGTATAGTTT TTTGTAGAAT ATGATTCTTT TAAGTCATTT TTTGTCCATT GCAAGGAGAT 32656 .......... .......... .......... .......... .......... .......... 244 TAAAATTTCC TTTTTGTTTG GCTGGAGCAG GACCCTGAAT TAATGGCGGC ATTCAAGGAT 32716 |||||||||| |||||||||| |||||||||| .......... .......... .......... GACCCTGAAT TAATGGCGGC ATTCAAGGAT 274 CCAGATGTCA TGGCTGCACT GCAAGATGGT ACTTTCCTTT TTGTCCTCAC CTCTTAGCCT 32776 |||||||||| |||||||||| |||||||| CCAGATGTCA TGGCTGCACT GCAAGATG.. .......... .......... .......... 302 GTCTATTTTG CTTTGATAAT TAAGACATTT CATTTCTTGA CAAGTGATCC AGCTGTTTCA 32836 .......... .......... .......... .......... .......... .......... 302 CTTGAAGATA ATTATCAATT ATCACATATA TTTACTATGT GCTCTGCTCT AAAGTTCACA 32896 .......... .......... .......... .......... .......... .......... 302 ATATCTTTGC AACATATCAA TCTGTTGAAT GACAAATGTA TATGCTTTAT ATTTTGGAAC 32956 .......... .......... .......... .......... .......... .......... 302 ATCTCCTTAT CATGCTTGTT AGTGTCTGAT GATTAAAAAC CACATGCAAG TATCAACACG 33016 .......... .......... .......... .......... .......... .......... 302 GTATAAACAT GGTAAGGGAA ATTGATGCTA TCACCAGCTT ATTAGCTACC AGTCCAATCG 33076 .......... .......... .......... .......... .......... .......... 302 GTGGAAGTTA TTAGAAACAT CGCCTTTTTG TTCTAGTTAA AAAATTGAGC ACCTCCAATA 33136 .......... .......... .......... .......... .......... .......... 302 AATTTTTTCT TCACTGTGTT ACCTTAGTAC ATATATGCCA CTTGATAGTA CCTGTCCACA 33196 .......... .......... .......... .......... .......... .......... 302 AGCTGCTTGA TTGTTATGTA TCTCCTATAT GGATATCTAA TTAATTGCAA CAACAAATAG 33256 .......... .......... .......... .......... .......... .......... 302 TCAAGTATGC TATTAATTAC AGACAAACAA AATAAATTTG GCTAGGAGTA TGTAAACATA 33316 .......... .......... .......... .......... .......... .......... 302 TTCTCTCCAT GTCTTTGCTT GTTCTTTTTC TCACTAAGCT TTTGAAAGAG TACATAGACT 33376 .......... .......... .......... .......... .......... .......... 302 TGGTACTTTT CCATTATTTG AGTAAAGCAG AAGAAGATTG ACAGTTGTGC TAAAGTATAG 33436 .......... .......... .......... .......... .......... .......... 302 CTAGGATTAT ATATATTGTT TCTAGCAAGA TTAGAACATA ATTGCTGATA AATTGCCTAT 33496 .......... .......... .......... .......... .......... .......... 302 AGTAACTTGC ATAGATTTGG AAAATCACAT CCCTGTAGAC TTAATGTTGC ACATACTATA 33556 .......... .......... .......... .......... .......... .......... 302 GATGTTTTGA GAGACACTAG TTTCTTTGTC CGCTTACTGA ATGTGGCCTG GTATTTTGCA 33616 .......... .......... .......... .......... .......... .......... 302 GTGATGAAGA ACCCAGCTAA TTTGGCCAAG CATCAAGGAA ATCCTAAGAT TGCTCCTATT 33676 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TGATGAAGA ACCCAGCTAA TTTGGCCAAG CATCAAGGAA ATCCTAAGAT TGCTCCTATT 361 ATTGCAAAAA TGATGGGCAA GTTTGCTGGA AATAATTGAG AGCTTTTGGG ATTTTGTCCG 33736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAAAAA TGATGGGCAA GTTTGCTGGA AATAATTGAG AGCTTTTGGG ATTTTGTCCG 421 TAGGAATTTC TAGAGTTTGA TAGAGAACAT GTTGTTTACC GTAAGCTTGT TTTTATCGAG 33796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGAATTTC TAGAGTTTGA TAGAGAACAT GTTGTTTACC GTAAGCTTGT TTTTATCGAG 481 TATAAAGTCA TTCTCCAAGA TTGTGTCTAA TCCAAGTTTA GTTTCAAACT ACAGCTGTCT 33856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAAAGTCA TTCTCCAAGA TTGTGTCTAA TCCAAGTTTA GTTTCAAACT ACAGCTGTCT 541 TCTTTTCTTA TAGATTTGTT ATTGTTATGT GTATCAACTA TTTTTCCTTC TGGTGACTGA 33916 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| |||||||||| TCTTTTCTTA TAGATTTGNT ATTGGTATGT GTATCAACTA TTTTTCCTTC TGGTGACTGA 601 TGTTTTGGTA TGCAAAAACT GGTTTCTATC TG 33948 |||||||||| |||||||||| |||||||||| || TGTTTTGGTA TGCAAAAACT GGTTTCTATC TG 633 hqPGS_C08HBa0060C12.1+_SGN-E284029+ (32237 32480,32687 32744,33618 33948) ******************************************************************************** EST sequence 264 +strand 432 n (File: SGN-E292663+) 1 GGCATGCCCG GAGGCTTTCC TGGTGGCATG CCCGGATTTC CTGGTGGCAT GCCCGGAGGT 61 TTTCCTGGTG GCATGCCTGG AGGCTTTCCA GGTGGCATGC CCGGAGGCTT TCCAGGGGGT 121 ATGCCTGGGT CTGCACCTGG AGGAATGCCC GGAGGCATGC CTGGGGCTGC ACCTGGAGGA 181 ATGCCCGGTA ACATGGACTA CAGCAAAATA CTGAATGACC CTGAATTAAT GGCGGCATTC 241 AAGGATCCAG ATGTCATGGC TGCACTGCAA GATGTGATGA AGAACCCAGC TAATTTGGCC 301 AAGCATCAAG GAAATCCTAA GATTGCTCCT ATTATTGCAA AAATGATGGG CAAGTTTGCT 361 GGAAATAATT GAGAGCTTTT GGGATTTTGT CCGTAAGAAT TTCTAGAGTT TGATAGAGAA 421 CATGTTGTTT AC Predicted gene structure (within gDNA segment 31281 to 35700): Exon 1 32265 32480 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 32481 32686 ( 206 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 32687 32744 ( 58 n); cDNA 217 274 ( 58 n); score: 1.000 Intron 2 32745 33617 ( 873 n); Pd: 0.947 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 3 33618 33775 ( 158 n); cDNA 275 432 ( 158 n); score: 0.994 MATCH C08HBa0060C12.1+ SGN-E292663+ 0.998 432 1.000 C PGS_C08HBa0060C12.1+_SGN-E292663+ (32265 32480,32687 32744,33618 33775) Alignment (genomic DNA sequence = upper lines): GGCATGCCCG GAGGCTTTCC TGGTGGCATG CCCGGATTTC CTGGTGGCAT GCCCGGAGGT 32324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGCCCG GAGGCTTTCC TGGTGGCATG CCCGGATTTC CTGGTGGCAT GCCCGGAGGT 60 TTTCCTGGTG GCATGCCTGG AGGCTTTCCA GGTGGCATGC CCGGAGGCTT TCCAGGGGGT 32384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCTGGTG GCATGCCTGG AGGCTTTCCA GGTGGCATGC CCGGAGGCTT TCCAGGGGGT 120 ATGCCTGGGT CTGCACCTGG AGGAATGCCC GGAGGCATGC CTGGGGCTGC ACCTGGAGGA 32444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTGGGT CTGCACCTGG AGGAATGCCC GGAGGCATGC CTGGGGCTGC ACCTGGAGGA 180 ATGCCCGGTA ACATGGACTA CAGCAAAATA CTGAATGTAA GTAAATCTAC TTTTGTATGT 32504 |||||||||| |||||||||| |||||||||| |||||| ATGCCCGGTA ACATGGACTA CAGCAAAATA CTGAAT.... .......... .......... 216 TTACTTTGAA ACAAATTATG GTCTTAATAT AAATGTTTGA ACAAAGGTAT TATCTTAGGT 32564 .......... .......... .......... .......... .......... .......... 216 GAAGACTAAT TTCAAATAAA AAAGAAAAAT CTTGTATAGT TTTTTGTAGA ATATGATTCT 32624 .......... .......... .......... .......... .......... .......... 216 TTTAAGTCAT TTTTTGTCCA TTGCAAGGAG ATTAAAATTT CCTTTTTGTT TGGCTGGAGC 32684 .......... .......... .......... .......... .......... .......... 216 AGGACCCTGA ATTAATGGCG GCATTCAAGG ATCCAGATGT CATGGCTGCA CTGCAAGATG 32744 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GACCCTGA ATTAATGGCG GCATTCAAGG ATCCAGATGT CATGGCTGCA CTGCAAGATG 274 GTACTTTCCT TTTTGTCCTC ACCTCTTAGC CTGTCTATTT TGCTTTGATA ATTAAGACAT 32804 .......... .......... .......... .......... .......... .......... 274 TTCATTTCTT GACAAGTGAT CCAGCTGTTT CACTTGAAGA TAATTATCAA TTATCACATA 32864 .......... .......... .......... .......... .......... .......... 274 TATTTACTAT GTGCTCTGCT CTAAAGTTCA CAATATCTTT GCAACATATC AATCTGTTGA 32924 .......... .......... .......... .......... .......... .......... 274 ATGACAAATG TATATGCTTT ATATTTTGGA ACATCTCCTT ATCATGCTTG TTAGTGTCTG 32984 .......... .......... .......... .......... .......... .......... 274 ATGATTAAAA ACCACATGCA AGTATCAACA CGGTATAAAC ATGGTAAGGG AAATTGATGC 33044 .......... .......... .......... .......... .......... .......... 274 TATCACCAGC TTATTAGCTA CCAGTCCAAT CGGTGGAAGT TATTAGAAAC ATCGCCTTTT 33104 .......... .......... .......... .......... .......... .......... 274 TGTTCTAGTT AAAAAATTGA GCACCTCCAA TAAATTTTTT CTTCACTGTG TTACCTTAGT 33164 .......... .......... .......... .......... .......... .......... 274 ACATATATGC CACTTGATAG TACCTGTCCA CAAGCTGCTT GATTGTTATG TATCTCCTAT 33224 .......... .......... .......... .......... .......... .......... 274 ATGGATATCT AATTAATTGC AACAACAAAT AGTCAAGTAT GCTATTAATT ACAGACAAAC 33284 .......... .......... .......... .......... .......... .......... 274 AAAATAAATT TGGCTAGGAG TATGTAAACA TATTCTCTCC ATGTCTTTGC TTGTTCTTTT 33344 .......... .......... .......... .......... .......... .......... 274 TCTCACTAAG CTTTTGAAAG AGTACATAGA CTTGGTACTT TTCCATTATT TGAGTAAAGC 33404 .......... .......... .......... .......... .......... .......... 274 AGAAGAAGAT TGACAGTTGT GCTAAAGTAT AGCTAGGATT ATATATATTG TTTCTAGCAA 33464 .......... .......... .......... .......... .......... .......... 274 GATTAGAACA TAATTGCTGA TAAATTGCCT ATAGTAACTT GCATAGATTT GGAAAATCAC 33524 .......... .......... .......... .......... .......... .......... 274 ATCCCTGTAG ACTTAATGTT GCACATACTA TAGATGTTTT GAGAGACACT AGTTTCTTTG 33584 .......... .......... .......... .......... .......... .......... 274 TCCGCTTACT GAATGTGGCC TGGTATTTTG CAGTGATGAA GAACCCAGCT AATTTGGCCA 33644 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TGATGAA GAACCCAGCT AATTTGGCCA 301 AGCATCAAGG AAATCCTAAG ATTGCTCCTA TTATTGCAAA AATGATGGGC AAGTTTGCTG 33704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATCAAGG AAATCCTAAG ATTGCTCCTA TTATTGCAAA AATGATGGGC AAGTTTGCTG 361 GAAATAATTG AGAGCTTTTG GGATTTTGTC CGTAGGAATT TCTAGAGTTT GATAGAGAAC 33764 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GAAATAATTG AGAGCTTTTG GGATTTTGTC CGTAAGAATT TCTAGAGTTT GATAGAGAAC 421 ATGTTGTTTA C 33775 |||||||||| | ATGTTGTTTA C 432 hqPGS_C08HBa0060C12.1+_SGN-E292663+ (32265 32480,32687 32744,33618 33775) ******************************************************************************** EST sequence 336 -strand 502 n (File: SGN-E217005-) 1 GGTCTGCACC TGGAGGAATG CCCGGAGGCA TGCCTGGGGC TGCACCTGGA GGAATGCCCG 61 GTAACATGGA CTACAGCAAA ATACTGAATG ACCCTGAATT AATGACGGCA TTCAAGGATC 121 CAGATGTCAT GGCTGCCCTG CAAGATGTGA TGAAGAACCC AGCTAATTTG GCCAAGCATC 181 AAGGAAATCC TAAGATTGCT CCTATTATTG CAAAAATGAT GGGCAAGTTT GCTGGAAATA 241 ATTGAGAGCT TTTGGGATTT TGTCCGTAGG AATTTCTAGA GTTTGATAGA GAACATGTTG 301 TTTACCGTAA GCTTGTTTTT ATCGAGTATA AAGTCATTCT CCAAGATTGT GTCTAATCCA 361 AGTTTAGTTT CAAACTACAG CTGTCTTCTT TTCTTATAGA TTTGTTATTG TTATGTGTAT 421 CAACTATTTT TCCTTCTGGT GACTGATCCC TTGGTATGCA AAAACTGGTT TCTATCTGCA 481 AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 31782 to 34770): Exon 1 32392 32480 ( 89 n); cDNA 1 89 ( 89 n); score: 1.000 Intron 1 32481 32686 ( 206 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0.96) Exon 2 32687 32744 ( 58 n); cDNA 90 147 ( 58 n); score: 0.966 Intron 2 32745 33617 ( 873 n); Pd: 0.947 (s: 0.96), Pa: 0.978 (s: 1.00) Exon 3 33618 33949 ( 332 n); cDNA 148 479 ( 332 n); score: 0.991 PPA cDNA 480 502 MATCH C08HBa0060C12.1+ SGN-E217005- 0.990 479 0.954 C PGS_C08HBa0060C12.1+_SGN-E217005- (32392 32480,32687 32744,33618 33949) Alignment (genomic DNA sequence = upper lines): GGTCTGCACC TGGAGGAATG CCCGGAGGCA TGCCTGGGGC TGCACCTGGA GGAATGCCCG 32451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTGCACC TGGAGGAATG CCCGGAGGCA TGCCTGGGGC TGCACCTGGA GGAATGCCCG 60 GTAACATGGA CTACAGCAAA ATACTGAATG TAAGTAAATC TACTTTTGTA TGTTTACTTT 32511 |||||||||| |||||||||| ||||||||| GTAACATGGA CTACAGCAAA ATACTGAAT. .......... .......... .......... 89 GAAACAAATT ATGGTCTTAA TATAAATGTT TGAACAAAGG TATTATCTTA GGTGAAGACT 32571 .......... .......... .......... .......... .......... .......... 89 AATTTCAAAT AAAAAAGAAA AATCTTGTAT AGTTTTTTGT AGAATATGAT TCTTTTAAGT 32631 .......... .......... .......... .......... .......... .......... 89 CATTTTTTGT CCATTGCAAG GAGATTAAAA TTTCCTTTTT GTTTGGCTGG AGCAGGACCC 32691 ||||| .......... .......... .......... .......... .......... .....GACCC 94 TGAATTAATG GCGGCATTCA AGGATCCAGA TGTCATGGCT GCACTGCAAG ATGGTACTTT 32751 |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| ||| TGAATTAATG ACGGCATTCA AGGATCCAGA TGTCATGGCT GCCCTGCAAG ATG....... 147 CCTTTTTGTC CTCACCTCTT AGCCTGTCTA TTTTGCTTTG ATAATTAAGA CATTTCATTT 32811 .......... .......... .......... .......... .......... .......... 147 CTTGACAAGT GATCCAGCTG TTTCACTTGA AGATAATTAT CAATTATCAC ATATATTTAC 32871 .......... .......... .......... .......... .......... .......... 147 TATGTGCTCT GCTCTAAAGT TCACAATATC TTTGCAACAT ATCAATCTGT TGAATGACAA 32931 .......... .......... .......... .......... .......... .......... 147 ATGTATATGC TTTATATTTT GGAACATCTC CTTATCATGC TTGTTAGTGT CTGATGATTA 32991 .......... .......... .......... .......... .......... .......... 147 AAAACCACAT GCAAGTATCA ACACGGTATA AACATGGTAA GGGAAATTGA TGCTATCACC 33051 .......... .......... .......... .......... .......... .......... 147 AGCTTATTAG CTACCAGTCC AATCGGTGGA AGTTATTAGA AACATCGCCT TTTTGTTCTA 33111 .......... .......... .......... .......... .......... .......... 147 GTTAAAAAAT TGAGCACCTC CAATAAATTT TTTCTTCACT GTGTTACCTT AGTACATATA 33171 .......... .......... .......... .......... .......... .......... 147 TGCCACTTGA TAGTACCTGT CCACAAGCTG CTTGATTGTT ATGTATCTCC TATATGGATA 33231 .......... .......... .......... .......... .......... .......... 147 TCTAATTAAT TGCAACAACA AATAGTCAAG TATGCTATTA ATTACAGACA AACAAAATAA 33291 .......... .......... .......... .......... .......... .......... 147 ATTTGGCTAG GAGTATGTAA ACATATTCTC TCCATGTCTT TGCTTGTTCT TTTTCTCACT 33351 .......... .......... .......... .......... .......... .......... 147 AAGCTTTTGA AAGAGTACAT AGACTTGGTA CTTTTCCATT ATTTGAGTAA AGCAGAAGAA 33411 .......... .......... .......... .......... .......... .......... 147 GATTGACAGT TGTGCTAAAG TATAGCTAGG ATTATATATA TTGTTTCTAG CAAGATTAGA 33471 .......... .......... .......... .......... .......... .......... 147 ACATAATTGC TGATAAATTG CCTATAGTAA CTTGCATAGA TTTGGAAAAT CACATCCCTG 33531 .......... .......... .......... .......... .......... .......... 147 TAGACTTAAT GTTGCACATA CTATAGATGT TTTGAGAGAC ACTAGTTTCT TTGTCCGCTT 33591 .......... .......... .......... .......... .......... .......... 147 ACTGAATGTG GCCTGGTATT TTGCAGTGAT GAAGAACCCA GCTAATTTGG CCAAGCATCA 33651 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......TGAT GAAGAACCCA GCTAATTTGG CCAAGCATCA 181 AGGAAATCCT AAGATTGCTC CTATTATTGC AAAAATGATG GGCAAGTTTG CTGGAAATAA 33711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAATCCT AAGATTGCTC CTATTATTGC AAAAATGATG GGCAAGTTTG CTGGAAATAA 241 TTGAGAGCTT TTGGGATTTT GTCCGTAGGA ATTTCTAGAG TTTGATAGAG AACATGTTGT 33771 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGAGCTT TTGGGATTTT GTCCGTAGGA ATTTCTAGAG TTTGATAGAG AACATGTTGT 301 TTACCGTAAG CTTGTTTTTA TCGAGTATAA AGTCATTCTC CAAGATTGTG TCTAATCCAA 33831 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGTAAG CTTGTTTTTA TCGAGTATAA AGTCATTCTC CAAGATTGTG TCTAATCCAA 361 GTTTAGTTTC AAACTACAGC TGTCTTCTTT TCTTATAGAT TTGTTATTGT TATGTGTATC 33891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAGTTTC AAACTACAGC TGTCTTCTTT TCTTATAGAT TTGTTATTGT TATGTGTATC 421 AACTATTTTT CCTTCTGGTG ACTGATGTTT TGGTATGCAA AAACTGGTTT CTATCTGC 33949 |||||||||| |||||||||| |||||| | |||||||||| |||||||||| |||||||| AACTATTTTT CCTTCTGGTG ACTGATCCCT TGGTATGCAA AAACTGGTTT CTATCTGC 479 hqPGS_C08HBa0060C12.1+_SGN-E217005- (32392 32480,32687 32744,33618 33949) ******************************************************************************** EST sequence 400 -strand 490 n (File: SGN-E232490-) 1 AATGCCCGAA GGCATGCCTG GGGCTGCACC TGGAGGAATG CCCGGTAACA TGGACTACAG 61 CAAAATACTG AATGACCCTG AATTAATGGC GGCATTCAAG GATCCAAATG TCATGGCTGC 121 ACTGCAAGAT GTGATGAAGA ACCCAGCTAA TTTGGCCAAG CATCAAGGAA ATCCTAAGAT 181 TGCTCCTATT ATTGCAAAAA TGATGGGCAA GTTTGCTGGA AATAATTGAG AGCTTTTGGG 241 ATTTTGTCCG TAGGAATTTC TAGAGTTTGA TAGAGAACAT GTTGTTTACC GTAAGCTTGT 301 TTTTATCGAG TATAAAGTCA TTCTCCAAGA TTGTGTCTAA TCCAAGTTTA GTTTCAAACT 361 ACAGCTGTCT TCTTTTCTTA TAGATTTGTT ATTGTTATGT GTATCAACTA TTTTTCCTTC 421 TGGTGACTGA TGTTTTGGTA TGCAAAAACT GGTTTCTATC TGCAAAAAAA AAAAAAAAAA 481 AAAAAAAAAA Predicted gene structure (within gDNA segment 31717 to 34810): Exon 1 32408 32480 ( 73 n); cDNA 1 73 ( 73 n); score: 0.986 Intron 1 32481 32686 ( 206 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 2 32687 32744 ( 58 n); cDNA 74 131 ( 58 n); score: 0.983 Intron 2 32745 33617 ( 873 n); Pd: 0.947 (s: 0.98), Pa: 0.978 (s: 1.00) Exon 3 33618 33949 ( 332 n); cDNA 132 463 ( 332 n); score: 1.000 PPA cDNA 464 490 MATCH C08HBa0060C12.1+ SGN-E232490- 0.996 463 0.945 C PGS_C08HBa0060C12.1+_SGN-E232490- (32408 32480,32687 32744,33618 33949) Alignment (genomic DNA sequence = upper lines): AATGCCCGGA GGCATGCCTG GGGCTGCACC TGGAGGAATG CCCGGTAACA TGGACTACAG 32467 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCCCGAA GGCATGCCTG GGGCTGCACC TGGAGGAATG CCCGGTAACA TGGACTACAG 60 CAAAATACTG AATGTAAGTA AATCTACTTT TGTATGTTTA CTTTGAAACA AATTATGGTC 32527 |||||||||| ||| CAAAATACTG AAT....... .......... .......... .......... .......... 73 TTAATATAAA TGTTTGAACA AAGGTATTAT CTTAGGTGAA GACTAATTTC AAATAAAAAA 32587 .......... .......... .......... .......... .......... .......... 73 GAAAAATCTT GTATAGTTTT TTGTAGAATA TGATTCTTTT AAGTCATTTT TTGTCCATTG 32647 .......... .......... .......... .......... .......... .......... 73 CAAGGAGATT AAAATTTCCT TTTTGTTTGG CTGGAGCAGG ACCCTGAATT AATGGCGGCA 32707 | |||||||||| |||||||||| .......... .......... .......... .........G ACCCTGAATT AATGGCGGCA 94 TTCAAGGATC CAGATGTCAT GGCTGCACTG CAAGATGGTA CTTTCCTTTT TGTCCTCACC 32767 |||||||||| || ||||||| |||||||||| ||||||| TTCAAGGATC CAAATGTCAT GGCTGCACTG CAAGATG... .......... .......... 131 TCTTAGCCTG TCTATTTTGC TTTGATAATT AAGACATTTC ATTTCTTGAC AAGTGATCCA 32827 .......... .......... .......... .......... .......... .......... 131 GCTGTTTCAC TTGAAGATAA TTATCAATTA TCACATATAT TTACTATGTG CTCTGCTCTA 32887 .......... .......... .......... .......... .......... .......... 131 AAGTTCACAA TATCTTTGCA ACATATCAAT CTGTTGAATG ACAAATGTAT ATGCTTTATA 32947 .......... .......... .......... .......... .......... .......... 131 TTTTGGAACA TCTCCTTATC ATGCTTGTTA GTGTCTGATG ATTAAAAACC ACATGCAAGT 33007 .......... .......... .......... .......... .......... .......... 131 ATCAACACGG TATAAACATG GTAAGGGAAA TTGATGCTAT CACCAGCTTA TTAGCTACCA 33067 .......... .......... .......... .......... .......... .......... 131 GTCCAATCGG TGGAAGTTAT TAGAAACATC GCCTTTTTGT TCTAGTTAAA AAATTGAGCA 33127 .......... .......... .......... .......... .......... .......... 131 CCTCCAATAA ATTTTTTCTT CACTGTGTTA CCTTAGTACA TATATGCCAC TTGATAGTAC 33187 .......... .......... .......... .......... .......... .......... 131 CTGTCCACAA GCTGCTTGAT TGTTATGTAT CTCCTATATG GATATCTAAT TAATTGCAAC 33247 .......... .......... .......... .......... .......... .......... 131 AACAAATAGT CAAGTATGCT ATTAATTACA GACAAACAAA ATAAATTTGG CTAGGAGTAT 33307 .......... .......... .......... .......... .......... .......... 131 GTAAACATAT TCTCTCCATG TCTTTGCTTG TTCTTTTTCT CACTAAGCTT TTGAAAGAGT 33367 .......... .......... .......... .......... .......... .......... 131 ACATAGACTT GGTACTTTTC CATTATTTGA GTAAAGCAGA AGAAGATTGA CAGTTGTGCT 33427 .......... .......... .......... .......... .......... .......... 131 AAAGTATAGC TAGGATTATA TATATTGTTT CTAGCAAGAT TAGAACATAA TTGCTGATAA 33487 .......... .......... .......... .......... .......... .......... 131 ATTGCCTATA GTAACTTGCA TAGATTTGGA AAATCACATC CCTGTAGACT TAATGTTGCA 33547 .......... .......... .......... .......... .......... .......... 131 CATACTATAG ATGTTTTGAG AGACACTAGT TTCTTTGTCC GCTTACTGAA TGTGGCCTGG 33607 .......... .......... .......... .......... .......... .......... 131 TATTTTGCAG TGATGAAGAA CCCAGCTAAT TTGGCCAAGC ATCAAGGAAA TCCTAAGATT 33667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TGATGAAGAA CCCAGCTAAT TTGGCCAAGC ATCAAGGAAA TCCTAAGATT 181 GCTCCTATTA TTGCAAAAAT GATGGGCAAG TTTGCTGGAA ATAATTGAGA GCTTTTGGGA 33727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCTATTA TTGCAAAAAT GATGGGCAAG TTTGCTGGAA ATAATTGAGA GCTTTTGGGA 241 TTTTGTCCGT AGGAATTTCT AGAGTTTGAT AGAGAACATG TTGTTTACCG TAAGCTTGTT 33787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTCCGT AGGAATTTCT AGAGTTTGAT AGAGAACATG TTGTTTACCG TAAGCTTGTT 301 TTTATCGAGT ATAAAGTCAT TCTCCAAGAT TGTGTCTAAT CCAAGTTTAG TTTCAAACTA 33847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATCGAGT ATAAAGTCAT TCTCCAAGAT TGTGTCTAAT CCAAGTTTAG TTTCAAACTA 361 CAGCTGTCTT CTTTTCTTAT AGATTTGTTA TTGTTATGTG TATCAACTAT TTTTCCTTCT 33907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGTCTT CTTTTCTTAT AGATTTGTTA TTGTTATGTG TATCAACTAT TTTTCCTTCT 421 GGTGACTGAT GTTTTGGTAT GCAAAAACTG GTTTCTATCT GC 33949 |||||||||| |||||||||| |||||||||| |||||||||| || GGTGACTGAT GTTTTGGTAT GCAAAAACTG GTTTCTATCT GC 463 hqPGS_C08HBa0060C12.1+_SGN-E232490- (32408 32480,32687 32744,33618 33949) ******************************************************************************** EST sequence 308 -strand 451 n (File: SGN-E330621-) 1 TGGGGCTGCA CCTGGAGGAA TGCCCGGTAA CATGGACTAC AGCAAAATAC TGAATGACCC 61 TGAATTAATG GCGGCATTCA AGGATCCAGA TGTCATGGCT GCACTGCAAG ATGTGATGAA 121 GAACCCAGCT AATTTGGCCA AGCATCAAGG AAATCCTAAG ATTGCTCCTA TTATTGCAAA 181 AATGATGGGC AAGTTTGCTG GAAATAATTG AGAGCTTTTG GGATTTTGTC CGTAGGAATT 241 TCTAGAGTTT GATAGAGAAC ATGTTGTTTA CCGTAAGCTT GTTTTTATCG AGTATAAAGT 301 CATTCTCCAA GATTGTGTCT AATCCAAGTT TAGTTTCAAA CTACAGCTGT CTTCTTTTCT 361 TATAGATTTG TTATTGTTAT GTGTATCAAC TATTTTTCCT TCTGGTGACT GATGTTTTGG 421 TATGCAAAAA AAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 31816 to 34744): Exon 1 32426 32480 ( 55 n); cDNA 1 55 ( 55 n); score: 1.000 Intron 1 32481 32686 ( 206 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 32687 32744 ( 58 n); cDNA 56 113 ( 58 n); score: 1.000 Intron 2 32745 33617 ( 873 n); Pd: 0.947 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 3 33618 33934 ( 317 n); cDNA 114 430 ( 317 n); score: 1.000 PPA cDNA 431 451 MATCH C08HBa0060C12.1+ SGN-E330621- 1.000 430 0.953 C PGS_C08HBa0060C12.1+_SGN-E330621- (32426 32480,32687 32744,33618 33934) Alignment (genomic DNA sequence = upper lines): TGGGGCTGCA CCTGGAGGAA TGCCCGGTAA CATGGACTAC AGCAAAATAC TGAATGTAAG 32485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGGGGCTGCA CCTGGAGGAA TGCCCGGTAA CATGGACTAC AGCAAAATAC TGAAT..... 55 TAAATCTACT TTTGTATGTT TACTTTGAAA CAAATTATGG TCTTAATATA AATGTTTGAA 32545 .......... .......... .......... .......... .......... .......... 55 CAAAGGTATT ATCTTAGGTG AAGACTAATT TCAAATAAAA AAGAAAAATC TTGTATAGTT 32605 .......... .......... .......... .......... .......... .......... 55 TTTTGTAGAA TATGATTCTT TTAAGTCATT TTTTGTCCAT TGCAAGGAGA TTAAAATTTC 32665 .......... .......... .......... .......... .......... .......... 55 CTTTTTGTTT GGCTGGAGCA GGACCCTGAA TTAATGGCGG CATTCAAGGA TCCAGATGTC 32725 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GACCCTGAA TTAATGGCGG CATTCAAGGA TCCAGATGTC 94 ATGGCTGCAC TGCAAGATGG TACTTTCCTT TTTGTCCTCA CCTCTTAGCC TGTCTATTTT 32785 |||||||||| ||||||||| ATGGCTGCAC TGCAAGATG. .......... .......... .......... .......... 113 GCTTTGATAA TTAAGACATT TCATTTCTTG ACAAGTGATC CAGCTGTTTC ACTTGAAGAT 32845 .......... .......... .......... .......... .......... .......... 113 AATTATCAAT TATCACATAT ATTTACTATG TGCTCTGCTC TAAAGTTCAC AATATCTTTG 32905 .......... .......... .......... .......... .......... .......... 113 CAACATATCA ATCTGTTGAA TGACAAATGT ATATGCTTTA TATTTTGGAA CATCTCCTTA 32965 .......... .......... .......... .......... .......... .......... 113 TCATGCTTGT TAGTGTCTGA TGATTAAAAA CCACATGCAA GTATCAACAC GGTATAAACA 33025 .......... .......... .......... .......... .......... .......... 113 TGGTAAGGGA AATTGATGCT ATCACCAGCT TATTAGCTAC CAGTCCAATC GGTGGAAGTT 33085 .......... .......... .......... .......... .......... .......... 113 ATTAGAAACA TCGCCTTTTT GTTCTAGTTA AAAAATTGAG CACCTCCAAT AAATTTTTTC 33145 .......... .......... .......... .......... .......... .......... 113 TTCACTGTGT TACCTTAGTA CATATATGCC ACTTGATAGT ACCTGTCCAC AAGCTGCTTG 33205 .......... .......... .......... .......... .......... .......... 113 ATTGTTATGT ATCTCCTATA TGGATATCTA ATTAATTGCA ACAACAAATA GTCAAGTATG 33265 .......... .......... .......... .......... .......... .......... 113 CTATTAATTA CAGACAAACA AAATAAATTT GGCTAGGAGT ATGTAAACAT ATTCTCTCCA 33325 .......... .......... .......... .......... .......... .......... 113 TGTCTTTGCT TGTTCTTTTT CTCACTAAGC TTTTGAAAGA GTACATAGAC TTGGTACTTT 33385 .......... .......... .......... .......... .......... .......... 113 TCCATTATTT GAGTAAAGCA GAAGAAGATT GACAGTTGTG CTAAAGTATA GCTAGGATTA 33445 .......... .......... .......... .......... .......... .......... 113 TATATATTGT TTCTAGCAAG ATTAGAACAT AATTGCTGAT AAATTGCCTA TAGTAACTTG 33505 .......... .......... .......... .......... .......... .......... 113 CATAGATTTG GAAAATCACA TCCCTGTAGA CTTAATGTTG CACATACTAT AGATGTTTTG 33565 .......... .......... .......... .......... .......... .......... 113 AGAGACACTA GTTTCTTTGT CCGCTTACTG AATGTGGCCT GGTATTTTGC AGTGATGAAG 33625 |||||||| .......... .......... .......... .......... .......... ..TGATGAAG 121 AACCCAGCTA ATTTGGCCAA GCATCAAGGA AATCCTAAGA TTGCTCCTAT TATTGCAAAA 33685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCAGCTA ATTTGGCCAA GCATCAAGGA AATCCTAAGA TTGCTCCTAT TATTGCAAAA 181 ATGATGGGCA AGTTTGCTGG AAATAATTGA GAGCTTTTGG GATTTTGTCC GTAGGAATTT 33745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGGGCA AGTTTGCTGG AAATAATTGA GAGCTTTTGG GATTTTGTCC GTAGGAATTT 241 CTAGAGTTTG ATAGAGAACA TGTTGTTTAC CGTAAGCTTG TTTTTATCGA GTATAAAGTC 33805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGAGTTTG ATAGAGAACA TGTTGTTTAC CGTAAGCTTG TTTTTATCGA GTATAAAGTC 301 ATTCTCCAAG ATTGTGTCTA ATCCAAGTTT AGTTTCAAAC TACAGCTGTC TTCTTTTCTT 33865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCCAAG ATTGTGTCTA ATCCAAGTTT AGTTTCAAAC TACAGCTGTC TTCTTTTCTT 361 ATAGATTTGT TATTGTTATG TGTATCAACT ATTTTTCCTT CTGGTGACTG ATGTTTTGGT 33925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATTTGT TATTGTTATG TGTATCAACT ATTTTTCCTT CTGGTGACTG ATGTTTTGGT 421 ATGCAAAAA 33934 ||||||||| ATGCAAAAA 430 hqPGS_C08HBa0060C12.1+_SGN-E330621- (32426 32480,32687 32744,33618 33934) ******************************************************************************** EST sequence 335 -strand 358 n (File: SGN-E216422-) 1 AAGGATCCAG ATGTCATGGC TGCACTGCAA GATGTGATGA AGAACCCAGC TAATTTGGCC 61 AAGCATCAAG GAAATCCTAA GATTGCTCCT ATTATTGCAA AAATGATGGG CAAGTTTGCT 121 GGAAATAATT GAGAGCTTTT GGGATTTTGT CCGTAGGAAT TTCTAGAGTT TGATAGAGAA 181 CATGTTGTTT ACCGTAAGCT TGTTTTTATC GAGTATAAAG TCATTCTCCA AGATTGTGTC 241 TAATCCAAGT TTAGTTTCAA ACTACAGCTG TCTTCTTTTC TTATAGATTT GTTATTGTTA 301 TGTGTATCAA CTATTTTTCC TTCTGGTGAC TGATGTTTTG GTATGCAAAA ACTGGTTT Predicted gene structure (within gDNA segment 32101 to 34541): Exon 1 32711 32744 ( 34 n); cDNA 1 34 ( 34 n); score: 1.000 Intron 1 32745 33617 ( 873 n); Pd: 0.947 (s: 0), Pa: 0.978 (s: 1.00) Exon 2 33618 33941 ( 324 n); cDNA 35 358 ( 324 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E216422- 1.000 358 1.000 C PGS_C08HBa0060C12.1+_SGN-E216422- (32711 32744,33618 33941) Alignment (genomic DNA sequence = upper lines): AAGGATCCAG ATGTCATGGC TGCACTGCAA GATGGTACTT TCCTTTTTGT CCTCACCTCT 32770 |||||||||| |||||||||| |||||||||| |||| AAGGATCCAG ATGTCATGGC TGCACTGCAA GATG...... .......... .......... 34 TAGCCTGTCT ATTTTGCTTT GATAATTAAG ACATTTCATT TCTTGACAAG TGATCCAGCT 32830 .......... .......... .......... .......... .......... .......... 34 GTTTCACTTG AAGATAATTA TCAATTATCA CATATATTTA CTATGTGCTC TGCTCTAAAG 32890 .......... .......... .......... .......... .......... .......... 34 TTCACAATAT CTTTGCAACA TATCAATCTG TTGAATGACA AATGTATATG CTTTATATTT 32950 .......... .......... .......... .......... .......... .......... 34 TGGAACATCT CCTTATCATG CTTGTTAGTG TCTGATGATT AAAAACCACA TGCAAGTATC 33010 .......... .......... .......... .......... .......... .......... 34 AACACGGTAT AAACATGGTA AGGGAAATTG ATGCTATCAC CAGCTTATTA GCTACCAGTC 33070 .......... .......... .......... .......... .......... .......... 34 CAATCGGTGG AAGTTATTAG AAACATCGCC TTTTTGTTCT AGTTAAAAAA TTGAGCACCT 33130 .......... .......... .......... .......... .......... .......... 34 CCAATAAATT TTTTCTTCAC TGTGTTACCT TAGTACATAT ATGCCACTTG ATAGTACCTG 33190 .......... .......... .......... .......... .......... .......... 34 TCCACAAGCT GCTTGATTGT TATGTATCTC CTATATGGAT ATCTAATTAA TTGCAACAAC 33250 .......... .......... .......... .......... .......... .......... 34 AAATAGTCAA GTATGCTATT AATTACAGAC AAACAAAATA AATTTGGCTA GGAGTATGTA 33310 .......... .......... .......... .......... .......... .......... 34 AACATATTCT CTCCATGTCT TTGCTTGTTC TTTTTCTCAC TAAGCTTTTG AAAGAGTACA 33370 .......... .......... .......... .......... .......... .......... 34 TAGACTTGGT ACTTTTCCAT TATTTGAGTA AAGCAGAAGA AGATTGACAG TTGTGCTAAA 33430 .......... .......... .......... .......... .......... .......... 34 GTATAGCTAG GATTATATAT ATTGTTTCTA GCAAGATTAG AACATAATTG CTGATAAATT 33490 .......... .......... .......... .......... .......... .......... 34 GCCTATAGTA ACTTGCATAG ATTTGGAAAA TCACATCCCT GTAGACTTAA TGTTGCACAT 33550 .......... .......... .......... .......... .......... .......... 34 ACTATAGATG TTTTGAGAGA CACTAGTTTC TTTGTCCGCT TACTGAATGT GGCCTGGTAT 33610 .......... .......... .......... .......... .......... .......... 34 TTTGCAGTGA TGAAGAACCC AGCTAATTTG GCCAAGCATC AAGGAAATCC TAAGATTGCT 33670 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TGA TGAAGAACCC AGCTAATTTG GCCAAGCATC AAGGAAATCC TAAGATTGCT 87 CCTATTATTG CAAAAATGAT GGGCAAGTTT GCTGGAAATA ATTGAGAGCT TTTGGGATTT 33730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTATTG CAAAAATGAT GGGCAAGTTT GCTGGAAATA ATTGAGAGCT TTTGGGATTT 147 TGTCCGTAGG AATTTCTAGA GTTTGATAGA GAACATGTTG TTTACCGTAA GCTTGTTTTT 33790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCGTAGG AATTTCTAGA GTTTGATAGA GAACATGTTG TTTACCGTAA GCTTGTTTTT 207 ATCGAGTATA AAGTCATTCT CCAAGATTGT GTCTAATCCA AGTTTAGTTT CAAACTACAG 33850 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGAGTATA AAGTCATTCT CCAAGATTGT GTCTAATCCA AGTTTAGTTT CAAACTACAG 267 CTGTCTTCTT TTCTTATAGA TTTGTTATTG TTATGTGTAT CAACTATTTT TCCTTCTGGT 33910 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCTTCTT TTCTTATAGA TTTGTTATTG TTATGTGTAT CAACTATTTT TCCTTCTGGT 327 GACTGATGTT TTGGTATGCA AAAACTGGTT T 33941 |||||||||| |||||||||| |||||||||| | GACTGATGTT TTGGTATGCA AAAACTGGTT T 358 hqPGS_C08HBa0060C12.1+_SGN-E216422- (32711 32744,33618 33941) ******************************************************************************** EST sequence 337 -strand 387 n (File: SGN-E216631-) 1 GGATCCAGAT GTCATGGCTG CACTGCAAGA TGTGATGAAG AACCCAGCTA ATTTGGCCAA 61 GCATCAAGGA AATCCTAAGA TTGCTCCTAT TATTGCAAAA ATGATGGGCA AGTTTGCTGG 121 AAATAATTGA GAGCTTTTGG GATTTTGTCC GTAGGAATTT CTAGAGTTTG ATAGAGAACA 181 TGTTGTTTAC CGTAAGCTTG TTTTTATCGA GTATAAAGTC ATTCTCCAAG ATTGTGTCTA 241 ATCCAAGTTT AGTTTCAAAC TACAGCTGTC TTCTTTTCTT ATAGATTTGT TATTGTTATG 301 TGTATCAACT ATTTTTCCTT CTGGTGACTG ACCCTCTCGT ATGCAAAAAC TGGTTTCTAT 361 CTGCAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 32103 to 34770): Exon 1 32713 32744 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 32745 33617 ( 873 n); Pd: 0.947 (s: 0), Pa: 0.978 (s: 1.00) Exon 2 33618 33949 ( 332 n); cDNA 33 364 ( 332 n); score: 0.985 PPA cDNA 365 387 MATCH C08HBa0060C12.1+ SGN-E216631- 0.985 364 0.941 C PGS_C08HBa0060C12.1+_SGN-E216631- (32713 32744,33618 33949) Alignment (genomic DNA sequence = upper lines): GGATCCAGAT GTCATGGCTG CACTGCAAGA TGGTACTTTC CTTTTTGTCC TCACCTCTTA 32772 |||||||||| |||||||||| |||||||||| || GGATCCAGAT GTCATGGCTG CACTGCAAGA TG........ .......... .......... 32 GCCTGTCTAT TTTGCTTTGA TAATTAAGAC ATTTCATTTC TTGACAAGTG ATCCAGCTGT 32832 .......... .......... .......... .......... .......... .......... 32 TTCACTTGAA GATAATTATC AATTATCACA TATATTTACT ATGTGCTCTG CTCTAAAGTT 32892 .......... .......... .......... .......... .......... .......... 32 CACAATATCT TTGCAACATA TCAATCTGTT GAATGACAAA TGTATATGCT TTATATTTTG 32952 .......... .......... .......... .......... .......... .......... 32 GAACATCTCC TTATCATGCT TGTTAGTGTC TGATGATTAA AAACCACATG CAAGTATCAA 33012 .......... .......... .......... .......... .......... .......... 32 CACGGTATAA ACATGGTAAG GGAAATTGAT GCTATCACCA GCTTATTAGC TACCAGTCCA 33072 .......... .......... .......... .......... .......... .......... 32 ATCGGTGGAA GTTATTAGAA ACATCGCCTT TTTGTTCTAG TTAAAAAATT GAGCACCTCC 33132 .......... .......... .......... .......... .......... .......... 32 AATAAATTTT TTCTTCACTG TGTTACCTTA GTACATATAT GCCACTTGAT AGTACCTGTC 33192 .......... .......... .......... .......... .......... .......... 32 CACAAGCTGC TTGATTGTTA TGTATCTCCT ATATGGATAT CTAATTAATT GCAACAACAA 33252 .......... .......... .......... .......... .......... .......... 32 ATAGTCAAGT ATGCTATTAA TTACAGACAA ACAAAATAAA TTTGGCTAGG AGTATGTAAA 33312 .......... .......... .......... .......... .......... .......... 32 CATATTCTCT CCATGTCTTT GCTTGTTCTT TTTCTCACTA AGCTTTTGAA AGAGTACATA 33372 .......... .......... .......... .......... .......... .......... 32 GACTTGGTAC TTTTCCATTA TTTGAGTAAA GCAGAAGAAG ATTGACAGTT GTGCTAAAGT 33432 .......... .......... .......... .......... .......... .......... 32 ATAGCTAGGA TTATATATAT TGTTTCTAGC AAGATTAGAA CATAATTGCT GATAAATTGC 33492 .......... .......... .......... .......... .......... .......... 32 CTATAGTAAC TTGCATAGAT TTGGAAAATC ACATCCCTGT AGACTTAATG TTGCACATAC 33552 .......... .......... .......... .......... .......... .......... 32 TATAGATGTT TTGAGAGACA CTAGTTTCTT TGTCCGCTTA CTGAATGTGG CCTGGTATTT 33612 .......... .......... .......... .......... .......... .......... 32 TGCAGTGATG AAGAACCCAG CTAATTTGGC CAAGCATCAA GGAAATCCTA AGATTGCTCC 33672 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TGATG AAGAACCCAG CTAATTTGGC CAAGCATCAA GGAAATCCTA AGATTGCTCC 87 TATTATTGCA AAAATGATGG GCAAGTTTGC TGGAAATAAT TGAGAGCTTT TGGGATTTTG 33732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTATTGCA AAAATGATGG GCAAGTTTGC TGGAAATAAT TGAGAGCTTT TGGGATTTTG 147 TCCGTAGGAA TTTCTAGAGT TTGATAGAGA ACATGTTGTT TACCGTAAGC TTGTTTTTAT 33792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGTAGGAA TTTCTAGAGT TTGATAGAGA ACATGTTGTT TACCGTAAGC TTGTTTTTAT 207 CGAGTATAAA GTCATTCTCC AAGATTGTGT CTAATCCAAG TTTAGTTTCA AACTACAGCT 33852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGTATAAA GTCATTCTCC AAGATTGTGT CTAATCCAAG TTTAGTTTCA AACTACAGCT 267 GTCTTCTTTT CTTATAGATT TGTTATTGTT ATGTGTATCA ACTATTTTTC CTTCTGGTGA 33912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTCTTTT CTTATAGATT TGTTATTGTT ATGTGTATCA ACTATTTTTC CTTCTGGTGA 327 CTGATGTTTT GGTATGCAAA AACTGGTTTC TATCTGC 33949 |||| | | ||||||||| |||||||||| ||||||| CTGACCCTCT CGTATGCAAA AACTGGTTTC TATCTGC 364 hqPGS_C08HBa0060C12.1+_SGN-E216631- (32713 32744,33618 33949) ******************************************************************************** EST sequence 399 -strand 344 n (File: SGN-E232414-) 1 CTAATTTGGC CAAGCATCAA GGAAATCCTA AGATTGCTCC TATTATTGCA AAAATGATGG 61 GCAAGTTTGC TGGAAATAAT TAAGAGCTTT TGGGATTTTG TCCGTAGGAA TTTCTAGAGT 121 TTGATAGAGA ACATGTTGTT TACCGTAAGC TTGTTTTTAT CGAGTATAAA GTCATTCTCC 181 AAGATTGTGT CTAATCCAAG TTTAGTTTCA AACTACAGCT GTCTTCTTTT CTTATAGATT 241 TGTTATTGTT ATGTGTATCA ACTATTTTTC CTTCTGGTGA CTGATGTTTT GGTATGCAAA 301 ACCTGGTTTC TATCTGCAAC CAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 33023 to 34810): Exon 1 33633 33949 ( 317 n); cDNA 1 317 ( 317 n); score: 0.994 PPA cDNA 322 344 MATCH C08HBa0060C12.1+ SGN-E232414- 0.994 317 0.922 C PGS_C08HBa0060C12.1+_SGN-E232414- (33633 33949) Alignment (genomic DNA sequence = upper lines): CTAATTTGGC CAAGCATCAA GGAAATCCTA AGATTGCTCC TATTATTGCA AAAATGATGG 33692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATTTGGC CAAGCATCAA GGAAATCCTA AGATTGCTCC TATTATTGCA AAAATGATGG 60 GCAAGTTTGC TGGAAATAAT TGAGAGCTTT TGGGATTTTG TCCGTAGGAA TTTCTAGAGT 33752 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| GCAAGTTTGC TGGAAATAAT TAAGAGCTTT TGGGATTTTG TCCGTAGGAA TTTCTAGAGT 120 TTGATAGAGA ACATGTTGTT TACCGTAAGC TTGTTTTTAT CGAGTATAAA GTCATTCTCC 33812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATAGAGA ACATGTTGTT TACCGTAAGC TTGTTTTTAT CGAGTATAAA GTCATTCTCC 180 AAGATTGTGT CTAATCCAAG TTTAGTTTCA AACTACAGCT GTCTTCTTTT CTTATAGATT 33872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTGTGT CTAATCCAAG TTTAGTTTCA AACTACAGCT GTCTTCTTTT CTTATAGATT 240 TGTTATTGTT ATGTGTATCA ACTATTTTTC CTTCTGGTGA CTGATGTTTT GGTATGCAAA 33932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATTGTT ATGTGTATCA ACTATTTTTC CTTCTGGTGA CTGATGTTTT GGTATGCAAA 300 AACTGGTTTC TATCTGC 33949 | |||||||| ||||||| ACCTGGTTTC TATCTGC 317 hqPGS_C08HBa0060C12.1+_SGN-E232414- (33633 33949) ******************************************************************************** EST sequence 3 +strand 295 n (File: SGN-E350442+) 1 TAAGATTGCT CCTATTATTG CAAAAATGAT GGGCAAGTTT GCTGGAAATA ATTGAGAGCT 61 TTTGGGATTT TGTCCGTAGG AATTTCTAGA GTTTGATAGA GAACATGTTG TTTACCGTAA 121 GCTTGTTTTT ATCGAGTATA AAGTCATTCT CCAAGATTGT GTCTAATCCA AGTTTAGTTT 181 CAAACTACAG CTGTCTTCTT TTCTTATAGA TTTGTTATTG TTATGTGTAT CAACTATTTT 241 TCCTTCTGGT GACTGATGTT TTGGTATGCA AAAACTGGTT TCTAAAAAAA AAAAA Predicted gene structure (within gDNA segment 33061 to 34664): Exon 1 33661 33944 ( 284 n); cDNA 1 284 ( 284 n); score: 1.000 PPA cDNA 285 295 MATCH C08HBa0060C12.1+ SGN-E350442+ 1.000 284 0.963 C PGS_C08HBa0060C12.1+_SGN-E350442+ (33661 33944) Alignment (genomic DNA sequence = upper lines): TAAGATTGCT CCTATTATTG CAAAAATGAT GGGCAAGTTT GCTGGAAATA ATTGAGAGCT 33720 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGATTGCT CCTATTATTG CAAAAATGAT GGGCAAGTTT GCTGGAAATA ATTGAGAGCT 60 TTTGGGATTT TGTCCGTAGG AATTTCTAGA GTTTGATAGA GAACATGTTG TTTACCGTAA 33780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGATTT TGTCCGTAGG AATTTCTAGA GTTTGATAGA GAACATGTTG TTTACCGTAA 120 GCTTGTTTTT ATCGAGTATA AAGTCATTCT CCAAGATTGT GTCTAATCCA AGTTTAGTTT 33840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGTTTTT ATCGAGTATA AAGTCATTCT CCAAGATTGT GTCTAATCCA AGTTTAGTTT 180 CAAACTACAG CTGTCTTCTT TTCTTATAGA TTTGTTATTG TTATGTGTAT CAACTATTTT 33900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTACAG CTGTCTTCTT TTCTTATAGA TTTGTTATTG TTATGTGTAT CAACTATTTT 240 TCCTTCTGGT GACTGATGTT TTGGTATGCA AAAACTGGTT TCTA 33944 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCCTTCTGGT GACTGATGTT TTGGTATGCA AAAACTGGTT TCTA 284 hqPGS_C08HBa0060C12.1+_SGN-E350442+ (33661 33944) ******************************************************************************** EST sequence 338 +strand 770 n (File: SGN-E262701+) 1 AACTCTACTG TCAGCGAATC AATCCACAGC AGGAAAGTAC ACGAAGAAAA AATGTGTTTA 61 TTAATAAGTA GGAATATCAG AAAATTCGTT AGTAAATATT CTGAAGACTG AATGGTATTT 121 ATAAACAAGA ATAATATATT CTGAAAGGCA ACCCTTTCAG AATTGACACA ACCATTAATG 181 AAAGGTTGCA AACTTTCAAA TGGTATTGAC TGTTCCTGAA AGTTGCAACC TTTCAGAACA 241 GTGGCGGGAA TTTTTAAAAT TATCTCTCGA TCGATCATTT GCCAAAGCCG AAGCCGAAGC 301 CGAAGCGAGC GAGCGACGAC GACGACGGCG CGAGGGGGGT TCCTCTTTCC AACCCTTTTA 361 ATAATTAATA GGAGTGTTTA TTTATTTAAA CTCTCTTATT TTCATTTCCA TTAACGATGA 421 GGGACTATTG CCTTTTTTAT TAAAGCATTA GAGGACTTTT CAAGTTCCCA ACCTTTCAAG 481 TTCTAAACTT TTCAAATTCC TCTCCTTCCC TCTATTTCCC ATCAATTCTT GCTACATACC 541 CAACAGTAAT TGTTTAATCT TTGTTAAGTC ACTTTTTGTG TTGAAATTAT TTACTTTTCT 601 CCCCAACTCC CAAAATCTCG TCTTTCCTCT TTCGTGTCAT TTTCAACCTG AGACGGAGTG 661 GGTTAATCAT TTGACTAGTT CTAATACTCG GGCTTAGCAT TTAATTGCTA CTTTGCTCTC 721 TTTTGTGAAG ATTTTGGCTT TGGAACTTTG GTTTTTTGAG CATAATGCTA Predicted gene structure (within gDNA segment 47879 to 41908): Exon 1 47279 47019 ( 261 n); cDNA 1 255 ( 255 n); score: 0.906 Intron 1 47018 46852 ( 167 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.96) Exon 2 46851 46560 ( 292 n); cDNA 256 552 ( 297 n); score: 0.880 Intron 2 46559 43762 (2798 n); Pd: 0.758 (s: 0.88), Pa: 0.331 (s: 0) Exon 3 43761 43750 ( 12 n); cDNA 553 563 ( 11 n); score: 0.667 MATCH C08HBa0060C12.1- SGN-E262701+ 0.892 565 0.734 C PGS_C08HBa0060C12.1-_SGN-E262701+ (47279 47019,46851 46560,43761 43750) Alignment (genomic DNA sequence = upper lines): AACTCTACTG TCAGCGAATC AATTCCACAG CAGGAAAGTA CACGAAG-AA ATATATGATT 47221 |||||||||| |||||||||| || ||||||| |||||||||| ||||||| || | || || || AACTCTACTG TCAGCGAATC AA-TCCACAG CAGGAAAGTA CACGAAGAAA AAATGTGTTT 59 TTTAAGAAGA AGGAAGATCA GAAAATTCGT TAGAAAATAT TCTGAATACT GAATGGTATT 47161 |||| ||| ||||| |||| |||||||||| ||| |||||| |||||| ||| |||||||||| ATTAATAAGT AGGAATATCA GAAAATTCGT TAGTAAATAT TCTGAAGACT GAATGGTATT 119 TATAGGCAAG AATAATATAT TCTGAAAGGT TGCTACCCTT TCAGAATTGA CACGACCATT 47101 |||| |||| |||||||||| ||||||| | || |||||| |||||||||| ||| |||||| TATAAACAAG AATAATATAT TCTGAAA-G- -GCAACCCTT TCAGAATTGA CACAACCATT 176 AATGAAAGGT TGCAAACTTT CAAATGGAAT TGACTGTTCC TGAAAGTTGC AACCTTTCAG 47041 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AATGAAAGGT TGCAAACTTT CAAATGGTAT TGACTGTTCC TGAAAGTTGC AACCTTTCAG 236 AACAGTCATG GCGGGAAATT TTGAATATAA CGGAATTTAA AACGGGTCAC TCGCGCGGAT 46981 ||||| || ||||||| || || AACAG---TG GCGGGAATTT TT........ .......... .......... .......... 255 CCGAGTCGGG TCGGGTTAAC TAAAAAGTTG AAAACATTTC GGTTAAATTC TGTTATCAAC 46921 .......... .......... .......... .......... .......... .......... 255 TGATTTATTG AAAATAATTT TTGGCCATTT AAATTAATTA ATAAATAATT AAAAATAAAT 46861 .......... .......... .......... .......... .......... .......... 255 TTTGTCCAAA AAATTATCTC TCGATCGATC ATTTGCCAAA GCCAAAGTCG AAGCCGAAG- 46802 | |||||||||| |||||||||| |||||||||| ||| ||| || ||||||||| .........A AAATTATCTC TCGATCGATC ATTTGCCAAA GCCGAAGCCG AAGCCGAAGC 306 TCG-AAGC-A AG-CGACGAC GGCGCGA--G GGGTCCCTCT TTTCAACCCT TTTAACAATT 46747 | ||| | | ||||||| ||||||| | |||| ||||| || ||||||| ||||| |||| GAGCGAGCGA CGACGACGAC GGCGCGAGGG GGGTTCCTCT TTCCAACCCT TTTAATAATT 366 AATAGGAGTG TTTATTTATT TAAACTCTAC TATTTTCATT TCCATTACCG ATGAGGGACT 46687 |||||||||| |||||||||| |||||||| |||||||||| ||||||| || |||||||||| AATAGGAGTG TTTATTTATT TAAACTCTCT TATTTTCATT TCCATTAACG ATGAGGGACT 426 ATTGCCTTTT TCAATAAAGC ATTAGAGGAC TTTTCAAGTT CCCAACCTTT CAAGTTCTAA 46627 |||||||||| | | |||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCCTTTT TTATTAAAGC ATTAGAGGAC TTTTCAAGTT CCCAACCTTT CAAGTTCTAA 486 ACTTTTCAAA TTCCTCTCCT TCCCTCTATT TCCCATCAAT TCTTGCTACA TACCCAACAT 46567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACTTTTCAAA TTCCTCTCCT TCCCTCTATT TCCCATCAAT TCTTGCTACA TACCCAACAG 546 TACCCAAGTA ACCCAATTAT TCCCATTTAG TATGATATTC GAGACTTAGT TGAAACAGAA 46507 || TA-ATTG... .......... .......... .......... .......... .......... 552 CCATTCCTAA AAGGTGGTTG CATAAACTAT GCACTCTACT AGTAGTTGTA AATTGAAATT 46447 .......... .......... .......... .......... .......... .......... 552 GTAATTTATC ATACAAATTT AAGTAAATTA AATTGATATT TTTTTAATTT GTGTAATTGT 46387 .......... .......... .......... .......... .......... .......... 552 TTTATCCTTA TTTTTATTTA ATTTTTTAAA ATTATAAATT TAATTTATTT AAATTACAAT 46327 .......... .......... .......... .......... .......... .......... 552 TTATAAATAT TACTCATAAA TTATAATATA TTAATAAATA ATAAGTAATA ACTTATAAAC 46267 .......... .......... .......... .......... .......... .......... 552 TTCAAAAGAT TTAAATCTTG AAAACTTAAT TAGACTTAAC TTGCAAACTT AATAAGTAAA 46207 .......... .......... .......... .......... .......... .......... 552 ATTTTTATAA AAAAAAAATC TTTAAAATAA CTTAAGTAAA AAATTACATT ATAAATTTAA 46147 .......... .......... .......... .......... .......... .......... 552 AAACTATTAA TTAAAACTTA GAAAAATAAA AAAACATTCA TATTTTCGTA ATTCAAAAAA 46087 .......... .......... .......... .......... .......... .......... 552 AAATCTTTTT TTTGAAATAA CTAGATGTGT CATCCCATTT ATCCCATTTC GGTCCATTAC 46027 .......... .......... .......... .......... .......... .......... 552 AGTTCCATCT CGATATAAAG TAGGACGGGA TGGACCGAGT ATCCGTCCCG GTAATTCCGG 45967 .......... .......... .......... .......... .......... .......... 552 TCCATTCATC TCGGTACCAA TCAACGAATT GATCAACTCG TCCCGTTTCG ATCCGGTACC 45907 .......... .......... .......... .......... .......... .......... 552 GATTCGTTCT GATCCGGTGA TTCCATTTCG ATCCGTTGCC CAATCTTACA TCCACACTAT 45847 .......... .......... .......... .......... .......... .......... 552 AGTGATTTTC CTCTTGTTTA ATCTGTCTTG ACATAGATTA TTTCAATACT ATAATGTTAA 45787 .......... .......... .......... .......... .......... .......... 552 GTCAATCAAT TTTGATATGT TCAAATTCAA TCTAAAAATA ACCCGTCGAT TTATTAATCA 45727 .......... .......... .......... .......... .......... .......... 552 AACTAACATT ACTCTCAACT ACCTACCTAG TAGAATAGGG GCTATACTCT CAATGTCATT 45667 .......... .......... .......... .......... .......... .......... 552 TGTTGTAGAT AAAGATTGGT ATGCACTTTA CTTCCACTAA TTTTGTCCAA AAAAGTCTTA 45607 .......... .......... .......... .......... .......... .......... 552 GCTACATTAG TTTAGATGAC TCTGATCAAC GTGTAAATTA TGCTACCAAA AGTATTTTTT 45547 .......... .......... .......... .......... .......... .......... 552 GTCCTTTTGT ATTATGAAGT CATTATAAGG TGTACGCAAG CATCATTAAT ATCACATAAT 45487 .......... .......... .......... .......... .......... .......... 552 TTCTTTTTAT TTATCTTAAT TTGTTGGATA AAGATGTCTG ATATTGACTA TTAATAATAT 45427 .......... .......... .......... .......... .......... .......... 552 CAAACCCTTT GTTAAATTAA ATTTGAACGA ATCAAAATGA ATTGAGTTTA TAATAGATGA 45367 .......... .......... .......... .......... .......... .......... 552 ATCATTAATC CGACCTAATC GGTCTTATTC TTATAAAATT TTTAGGTTAT CTTTTCACTA 45307 .......... .......... .......... .......... .......... .......... 552 ATAAATAAAT AAGTAAAAAT AAAAGATTCA AGTTCATGAC ATGTATTGTT CCTTTTGGGC 45247 .......... .......... .......... .......... .......... .......... 552 TTAGACCTAT TAGCTATGCA CCCCATTTCA AGCCTCAAAT TAAAAGTGTG TGTATCATAC 45187 .......... .......... .......... .......... .......... .......... 552 GAACGTGAGT TATAATTTTA ACTTATTTAA AAAAAATTCA CCTTTTTCCC TCATTCTGAC 45127 .......... .......... .......... .......... .......... .......... 552 GTGAAATTTA CCTAAGGTAC TAGGTGCACT TTATTTTCAA AAATTGTCAG CATATAAATC 45067 .......... .......... .......... .......... .......... .......... 552 TATCAATCCT GCGTAATCCA CACCCCCATT AGTTTGCCCT CCATTAGAAG TGTCACAAAA 45007 .......... .......... .......... .......... .......... .......... 552 GTCAATTAAT ATGCTTAATC AAATATTACA AAAACTAAAA GTTAGCACGC GCATATATGA 44947 .......... .......... .......... .......... .......... .......... 552 ATATATATAT ATATATATAT ATATATATAT ATATATATAA AATAAAGAAT TAAATGTGAT 44887 .......... .......... .......... .......... .......... .......... 552 ACAAATCCAT AAATTTATGT AATAATAATC TTAATCTTAT GATAATTATC ACTAATTAAT 44827 .......... .......... .......... .......... .......... .......... 552 TAGGTTCCAC AACTAGCTAG CAAGAGTAGC ATCAAGGAAA TGTGATCATC AAATTTAGAC 44767 .......... .......... .......... .......... .......... .......... 552 TTTAGTCGAA AGATGACATA ATTAACTTTA TTACTCTATT CTAGCTGCTA GTGCCTTAAG 44707 .......... .......... .......... .......... .......... .......... 552 TTTAATAGCT CCATCGTGCA TCATATTTTA TTTTTTCTTC AAAATATCCT ACATTCAACT 44647 .......... .......... .......... .......... .......... .......... 552 GTCGACAAAT ACATTATTGA GGAATTAACT TATCTAATAC ATATGATCCG ATCAAACTTA 44587 .......... .......... .......... .......... .......... .......... 552 TTTATCAATA TGATCGATAT ATATTTATTC ACTAATTCTA TTTATTATAT GTATGTTGCT 44527 .......... .......... .......... .......... .......... .......... 552 AGATTATACC TAAATATACA AATTTTATAT ATTTGTGTAT ATGTTCACTA ATTTGTACGT 44467 .......... .......... .......... .......... .......... .......... 552 GGAGTAGTTC CTCTATTATG TCCTATTTTC AGAAAATAAA ATCGTGACCA ACTCTAAAGC 44407 .......... .......... .......... .......... .......... .......... 552 TACTCAACTG ATTAAAATTA ACATCAAACA GTTTTCAGAG TATACTTTTA AATTCCCAGA 44347 .......... .......... .......... .......... .......... .......... 552 AAGAAAGAAT ATCTATGAGT GTTTCGCTAA ATAAGTTGGT CGAATTAGTT TATGTTTGTT 44287 .......... .......... .......... .......... .......... .......... 552 AAATGATAGA AGTGTTTATA AATCAAACTC AGTTAAATAT CATAAGTTTT TCATTTTCAC 44227 .......... .......... .......... .......... .......... .......... 552 GAATCTACTA TTATTTGTAA CTTATTATAA GCATTTTTTA TTTGACCAAT AGTTTATCAT 44167 .......... .......... .......... .......... .......... .......... 552 TTTATTTCCA ATATCTTTTG CAATCTCCTA ATATACTTTT CCTAACACAT AAACTCCTAA 44107 .......... .......... .......... .......... .......... .......... 552 TTATTTTTCT ATTCTATCAC CATCTTACGT TCTTTTTATA TATAAATATT AAGGACTTTT 44047 .......... .......... .......... .......... .......... .......... 552 CATCCATTTA AACAGAAAAA AAAACACAAA TGTTTATCAA CGTATCTTAC TAAACACACC 43987 .......... .......... .......... .......... .......... .......... 552 AACTATTTAC TATCAATTTC AACTTTTCTT TTTAACATTT TTCAAACCAC CTGTCAAAAC 43927 .......... .......... .......... .......... .......... .......... 552 CCAAAAGAAA GAAAGAGAAG TGGGGAAATG GAGAAATTAT AAAGAAGATA CACAAAAAGT 43867 .......... .......... .......... .......... .......... .......... 552 AAAAGCATCA TTAATTATAA TTTATAATCT CCTCATAATA ATATACAAAA GATAATTTCT 43807 .......... .......... .......... .......... .......... .......... 552 TATAATATAC ATATATGAAT CCCTCCAATA ATTTGCCTTA TGAAGTCTCC ATCCTTG 43750 | | ||| ||| .......... .......... .......... .......... .....T-TTA ATCTTTG 563 hqPGS_C08HBa0060C12.1-_SGN-E262701+ (47279 47019,46851 46560) ******************************************************************************** EST sequence 311 +strand 599 n (File: SGN-E551179+) 1 AAACTCTACT GTCAGCGAAT CAATCCACAG CAGGAAAGTA CACGAAGAAA AAATGTGTTT 61 ATTAATAAGT AGGAATATCA GAAAATTCGT TAGTAAATAT TCTGAAGACT GAATGGTATT 121 TATAAACAAG AATAATATAT TCTGAAAGGC AACCCTTTCA GAATTGACAC AACCATTAAT 181 GAAAGGTTGC AAACTTTCAA ATGGTATTGA CTGTTCCTGA AAGTTGCAAC CTTTCAGAAC 241 AGTGGCGGGA ATTTTTAAAA TTATCTCTCG ATCGATCATT TGCCAAAGCC GAAGCCGAAG 301 CCGAAGCGAG CGAGCGACGA CCACGACGGC GCGAGGGGGG TTCCTCTTTC CAACCCTTTT 361 AATAATTAAT AGGAGTGTTT ATTTATTTAA ACTCTCTTAT TTTCATTTCC ATTAACGATG 421 AGGGACTATT GCCTTTTTTA TTAAAGCATT AGAGGACTTT TCAAGTTCCC AACCTTTCAA 481 GTTCTAAACT TTTCAAATTC CTCTCCTTCC CTCTATTTCC CATCAATTCT TGCTACATAC 541 CCAACAGTAA TTGTTTAATC TTTGTTAAGC CACTTTTTGT GTTGAAATTA TTTACTTTT Predicted gene structure (within gDNA segment 47880 to 45428): Exon 1 47280 47019 ( 262 n); cDNA 1 256 ( 256 n); score: 0.906 Intron 1 47018 46852 ( 167 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.96) Exon 2 46851 46565 ( 287 n); cDNA 257 549 ( 293 n); score: 0.892 MATCH C08HBa0060C12.1- SGN-E551179+ 0.899 549 0.917 C PGS_C08HBa0060C12.1-_SGN-E551179+ (47280 47019,46851 46565) Alignment (genomic DNA sequence = upper lines): AAACTCTACT GTCAGCGAAT CAATTCCACA GCAGGAAAGT ACACGAAG-A AATATATGAT 47222 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||| | || || || | AAACTCTACT GTCAGCGAAT CAA-TCCACA GCAGGAAAGT ACACGAAGAA AAAATGTGTT 59 TTTTAAGAAG AAGGAAGATC AGAAAATTCG TTAGAAAATA TTCTGAATAC TGAATGGTAT 47162 | |||| ||| ||||| ||| |||||||||| |||| ||||| ||||||| || |||||||||| TATTAATAAG TAGGAATATC AGAAAATTCG TTAGTAAATA TTCTGAAGAC TGAATGGTAT 119 TTATAGGCAA GAATAATATA TTCTGAAAGG TTGCTACCCT TTCAGAATTG ACACGACCAT 47102 ||||| ||| |||||||||| |||||||| | || ||||| |||||||||| |||| ||||| TTATAAACAA GAATAATATA TTCTGAAA-G --GCAACCCT TTCAGAATTG ACACAACCAT 176 TAATGAAAGG TTGCAAACTT TCAAATGGAA TTGACTGTTC CTGAAAGTTG CAACCTTTCA 47042 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TAATGAAAGG TTGCAAACTT TCAAATGGTA TTGACTGTTC CTGAAAGTTG CAACCTTTCA 236 GAACAGTCAT GGCGGGAAAT TTTGAATATA ACGGAATTTA AAACGGGTCA CTCGCGCGGA 46982 |||||| | |||||||| | ||| GAACAG---T GGCGGGAATT TTT....... .......... .......... .......... 256 TCCGAGTCGG GTCGGGTTAA CTAAAAAGTT GAAAACATTT CGGTTAAATT CTGTTATCAA 46922 .......... .......... .......... .......... .......... .......... 256 CTGATTTATT GAAAATAATT TTTGGCCATT TAAATTAATT AATAAATAAT TAAAAATAAA 46862 .......... .......... .......... .......... .......... .......... 256 TTTTGTCCAA AAAATTATCT CTCGATCGAT CATTTGCCAA AGCCAAAGTC GAAGCCGAAG 46802 |||||||||| |||||||||| |||||||||| |||| ||| | |||||||||| .......... AAAATTATCT CTCGATCGAT CATTTGCCAA AGCCGAAGCC GAAGCCGAAG 306 -TCG-AAGC- AAG-CGACGA CGGCGCGA-- GGGGTCCCTC TTTTCAACCC TTTTAACAAT 46748 | ||| | | | |||| |||||||| ||||| |||| ||| |||||| |||||| ||| CGAGCGAGCG ACGACCACGA CGGCGCGAGG GGGGTTCCTC TTTCCAACCC TTTTAATAAT 366 TAATAGGAGT GTTTATTTAT TTAAACTCTA CTATTTTCAT TTCCATTACC GATGAGGGAC 46688 |||||||||| |||||||||| ||||||||| ||||||||| |||||||| | |||||||||| TAATAGGAGT GTTTATTTAT TTAAACTCTC TTATTTTCAT TTCCATTAAC GATGAGGGAC 426 TATTGCCTTT TTCAATAAAG CATTAGAGGA CTTTTCAAGT TCCCAACCTT TCAAGTTCTA 46628 |||||||||| || | ||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGCCTTT TTTATTAAAG CATTAGAGGA CTTTTCAAGT TCCCAACCTT TCAAGTTCTA 486 AACTTTTCAA ATTCCTCTCC TTCCCTCTAT TTCCCATCAA TTCTTGCTAC ATACCCAACA 46568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTTCAA ATTCCTCTCC TTCCCTCTAT TTCCCATCAA TTCTTGCTAC ATACCCAACA 546 TTA 46565 || GTA 549 hqPGS_C08HBa0060C12.1-_SGN-E551179+ (47280 47019,46851 46565) ******************************************************************************** EST sequence 397 +strand 287 n (File: SGN-E277804+) 1 GCACGAGTCT TTGTATATTT TGAATTGTGA GAAGCTCAAG TGTATATAAC GGAATTTAAA 61 ACGGGTCACT CGCGCGAGGG GTCCCTCTTT CCAATCCTTT TAACAATTAA TAGGAGTGTT 121 TATTTATTTA AACTCTCCTA TTTTCCTTTC CATTACCGAT GAGGGACTAT TGTCTTTTTC 181 AATAAAGCAT TAGAGGACTT CTCAAGTTCC CAACCTTTCA AATTCCTCTC CTTCCCTCTA 241 TTTTCGATCA ATTCTTGCTA CATACCCAAC AAGTATTACC CATTATA Predicted gene structure (within gDNA segment 48046 to 45798): Exon 1 47016 46989 ( 28 n); cDNA 44 71 ( 28 n); score: 1.000 Intron 1 46988 46784 ( 205 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 46783 46634 ( 150 n); cDNA 72 221 ( 150 n); score: 0.960 MATCH C08HBa0060C12.1- SGN-E277804+ 0.960 178 0.620 C PGS_C08HBa0060C12.1-_SGN-E277804+ (47016 46989,46783 46634) Alignment (genomic DNA sequence = upper lines): ATATAACGGA ATTTAAAACG GGTCACTCGC GCGGATCCGA GTCGGGTCGG GTTAACTAAA 46957 |||||||||| |||||||||| |||||||| ATATAACGGA ATTTAAAACG GGTCACTC.. .......... .......... .......... 71 AAGTTGAAAA CATTTCGGTT AAATTCTGTT ATCAACTGAT TTATTGAAAA TAATTTTTGG 46897 .......... .......... .......... .......... .......... .......... 71 CCATTTAAAT TAATTAATAA ATAATTAAAA ATAAATTTTG TCCAAAAAAT TATCTCTCGA 46837 .......... .......... .......... .......... .......... .......... 71 TCGATCATTT GCCAAAGCCA AAGTCGAAGC CGAAGTCGAA GCAAGCGACG ACGGCGCGAG 46777 ||||||| .......... .......... .......... .......... .......... ...GCGCGAG 78 GGGTCCCTCT TTTCAACCCT TTTAACAATT AATAGGAGTG TTTATTTATT TAAACTCTAC 46717 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| |||||||| | GGGTCCCTCT TTCCAATCCT TTTAACAATT AATAGGAGTG TTTATTTATT TAAACTCTCC 138 TATTTTCATT TCCATTACCG ATGAGGGACT ATTGCCTTTT TCAATAAAGC ATTAGAGGAC 46657 ||||||| || |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TATTTTCCTT TCCATTACCG ATGAGGGACT ATTGTCTTTT TCAATAAAGC ATTAGAGGAC 198 TTTTCAAGTT CCCAACCTTT CAA 46634 || ||||||| |||||||||| ||| TTCTCAAGTT CCCAACCTTT CAA 221 hqPGS_C08HBa0060C12.1-_SGN-E277804+ (47016 46989,46783 46634) ******************************************************************************** EST sequence 378 +strand 574 n (File: SGN-E244899+) 1 CACGCGTGCG GATCCGAGTC GGGTCGGGTT TACTAAAAAG TTGAAAACAT TTCGTTTAAA 61 TTCTGTTATC AACTAATTAA TTGAAAATAT TTTTTGGCCA TTTAATAAAT TAAATAAATA 121 ATTAAAACAA ATTTTGTCCA AAAAATAATC TCTCGATCGA TCATTTGCCG AAGCCGAAGC 181 GAGCGACGAC GACGGCGCGA GGAGGGTCCC TCTTTCCAAC CCTTTTAACA ATTAATAGGA 241 GTTTTTATGT ATTTAAACAC TCCTATTTTT TTTTTTCATT ACCGATGAGG GACAATTGCT 301 TTTTCATTAA AGCATAAGAG GACTTTTCAA TTTCCCAACT CTTCAAGTTC TCAACTTTTC 361 AAATTCCTCT CCTTCCCTCT ATTTTCCGTT AATTCTTGCT ACATACCCAG CAGTATGAGG 421 TGGGCATAGC TACATATTAG TAATGTCTCT CTTAGTTGGT TCCGTTAGCC TTGATATAAC 481 ACTTATTTTT TGGTCAAATT CGAATGAAAT TGTTGTCACA TATTGAGCAG AAGTACTGCA 541 ACTCTTCTTT TTTTTATGGG GCGGGGGGGA TTTG Predicted gene structure (within gDNA segment 47656 to 44311): Exon 1 46993 46565 ( 429 n); cDNA 1 415 ( 415 n); score: 0.869 MATCH C08HBa0060C12.1- SGN-E244899+ 0.869 429 0.747 C PGS_C08HBa0060C12.1-_SGN-E244899+ (46993 46565) Alignment (genomic DNA sequence = upper lines): CACTCGCGCG GATCCGAGTC GGGTCGGGTT AACTAAAAAG TTGAAAACAT TTCGGTTAAA 46934 ||| || ||| |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| CACGCGTGCG GATCCGAGTC GGGTCGGGTT TACTAAAAAG TTGAAAACAT TTCGTTTAAA 60 TTCTGTTATC AACTGATTTA TTGAAAATAA TTTTTGGCCA TTTAAATTAA TT-AATAAAT 46875 |||||||||| |||| ||| | ||||||||| |||||||||| ||| ||| || || ||||||| TTCTGTTATC AACTAATTAA TTGAAAATAT TTTTTGGCCA TTT-AATAAA TTAAATAAAT 119 AATTAAAAAT AAATTTTGTC CAAAAAATTA TCTCTCGATC GATCATTTGC CAAAGCCAAA 46815 |||| |||| |||||||||| |||||||| | |||||||||| |||||||||| | ||||| || AATT-AAAAC AAATTTTGTC CAAAAAATAA TCTCTCGATC GATCATTTGC CGAAGCCGAA 178 GTCGAAGCCG AAGTCGAAGC AAGCGACGAC GGCGCGAGGG GTCCCTCTTT TCAACCCTTT 46755 | || || || | || | | | || || | | | || || |||||||||| ||||||||| G-CG-AG-CG -A--CG-A-C GA-CGGCG-C -GAG-GA-GG GTCCCTCTTT CCAACCCTTT 225 TAACAATTAA TAGGAGTGTT TATTTATTTA AACTCTACTA -TTTTCATTT CCATTACCGA 46696 |||||||||| ||||||| || ||| |||||| ||| || ||| |||| ||| ||||||||| TAACAATTAA TAGGAGTTTT TATGTATTTA AACACTCCTA TTTTTTTTTT TCATTACCGA 285 TGAGGGACTA TTGCCTTTTT CAATAAAGCA TTAGAGGACT TTTCAAGTTC CCAACCTTTC 46636 |||||||| | ||| |||||| || ||||||| | |||||||| |||||| ||| ||||| ||| TGAGGGACAA TTG-CTTTTT CATTAAAGCA TAAGAGGACT TTTCAATTTC CCAACTCTTC 344 AAGTTCTAAA CTTTTCAAAT TCCTCTCCTT CCCTCTATTT CCCATCAATT CTTGCTACAT 46576 ||||||| || |||||||||| |||||||||| |||||||||| || | |||| |||||||||| AAGTTCTCAA CTTTTCAAAT TCCTCTCCTT CCCTCTATTT TCCGTTAATT CTTGCTACAT 404 ACCCAACATT A 46565 ||||| || | | ACCCAGCAGT A 415 hqPGS_C08HBa0060C12.1-_SGN-E244899+ (46993 46565) ******************************************************************************** EST sequence 317 +strand 857 n (File: SGN-E538064+) 1 ATTATAATTG CAGACTTAAA GGAGTATAAA ATCACTAAGA TTTTTGTCTC CACCAAAAAT 61 ACAGATTTAA ATAATTTCCT TAAGATTGTT GCCAATCTGT GTTAAGAAAA TCAGAAATTA 121 CTGGTTGTGA TAAATCATTC AGAAACACGA AGTAACTGAG ATTTTTAGAA CCACTAAATA 181 AGATGAACAT AAATTTATTT GTAAAAATAA TTTAATCTGT AAAACTTACC AGAATCTTGA 241 ATACTCTTTT TGATAATTTA GGAAAAAAAT CAAGTCCACT GAATTCACAG TGTCCCCTTA 301 AGGAAATTAT TCCCCTGTAG TATCCGAGGT TTGATTTGGA ATATAACCTC CCAGGGTAAA 361 ATGATCTTAA TCAGTAGAGT ATAGATACCA AAAACTCTAC TGTCAGCGAA TCAATCCACA 421 ACAGGAAAGT ACACGAAGAA AAATGTGTTT TTTAAGAAGT AGGAAGATCA GAAAATTCGT 481 TAGTAAATAT TCTGAAGACT GAATGGTATT TATAGGCAAG AATAATATAT TCTGAAAGGT 541 TGCAACTCTT TCAGAATTGA CACAACCATT AATGAAAGGT TGCAAACTTT CAAATGGTAT 601 TGACTGTTCC TGAAAGTTGC AACCTTTCAG AACAGTGGCG GGAATTTTTA AATATAACGG 661 AATTTAAAAC GGGTCACGCG CGCGGATCCG AGTCGGGTCG GGTTAACTAA AAAGTTGAAA 721 ACAATTCGGT TAATTTCTGT TATCAACTGA TTAATTGAAA ATAATTTTTG GCCATTTAAN 781 NTTATTAATA AATAATTAAA ATAATTTGTC CAAAAAATAT CTCTCGATCA TTTGCCAAGT 841 CGAAGCCGAG CGAGCGA Predicted gene structure (within gDNA segment 49050 to 45499): Exon 1 47590 46835 ( 756 n); cDNA 87 829 ( 743 n); score: 0.942 MATCH C08HBa0060C12.1- SGN-E538064+ 0.942 756 0.882 C PGS_C08HBa0060C12.1-_SGN-E538064+ (47590 46835) Alignment (genomic DNA sequence = upper lines): TGTTGCCAAT CTGTGTTAAG AAAATCAGAA ATTACTGGTT GTAATAAATC ATTCAGAAAC 47531 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGTTGCCAAT CTGTGTTAAG AAAATCAGAA ATTACTGGTT GTGATAAATC ATTCAGAAAC 146 ACGAAGTAAC TGAGATTTTT AGAACCAGTA AATAAGATGA ACAGAAATTT ATTTGTAAAA 47471 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| |||||| || ACGAAGTAAC TGAGATTTTT AGAACCACTA AATAAGATGA ACATAAATTT ATTTGT--AA 204 AAATAATTTA ATCTGTAAAA CTTATCAGAA TGTTGAATAC TCTTTTATTT CTCTTTTTAG 47411 |||||||||| |||||||||| |||| ||||| | |||||||| || ||| || | ||||| AAATAATTTA ATCTGTAAAA CTTACCAGAA TCTTGAATAC TC-TTT-TTG AT-AATTTAG 261 GAAGAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA GGAAATTATT CCCCTCTAGT 47351 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GAAAAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA GGAAATTATT CCCCTGTAGT 321 ATCCGAGGTT TGATTTGGAA TATAACCTCC CAGGGTAAAA TGATCTTAAT CAGTAGAGTA 47291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGAGGTT TGATTTGGAA TATAACCTCC CAGGGTAAAA TGATCTTAAT CAGTAGAGTA 381 TAGATACCAA AAACTCTACT GTCAGCGAAT CAATTCCACA GCAGGAAAGT ACACGAAGAA 47231 |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| |||||||||| TAGATACCAA AAACTCTACT GTCAGCGAAT CAA-TCCACA ACAGGAAAGT ACACGAAGAA 440 ATATATGATT TTTAAGAAGA AGGAAGATCA GAAAATTCGT TAGAAAATAT TCTGAATACT 47171 | || || || ||||||||| |||||||||| |||||||||| ||| |||||| |||||| ||| AAATGTGTTT TTTAAGAAGT AGGAAGATCA GAAAATTCGT TAGTAAATAT TCTGAAGACT 500 GAATGGTATT TATAGGCAAG AATAATATAT TCTGAAAGGT TGCTACCCTT TCAGAATTGA 47111 |||||||||| |||||||||| |||||||||| |||||||||| ||| || ||| |||||||||| GAATGGTATT TATAGGCAAG AATAATATAT TCTGAAAGGT TGCAACTCTT TCAGAATTGA 560 CACGACCATT AATGAAAGGT TGCAAACTTT CAAATGGAAT TGACTGTTCC TGAAAGTTGC 47051 ||| |||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CACAACCATT AATGAAAGGT TGCAAACTTT CAAATGGTAT TGACTGTTCC TGAAAGTTGC 620 AACCTTTCAG AACAGTCATG GCGGGAAATT TTGAATATAA CGGAATTTAA AACGGGTCAC 46991 |||||||||| ||||| || ||||||| || || ||||||| |||||||||| |||||||||| AACCTTTCAG AACAG---TG GCGGGAATTT TTAAATATAA CGGAATTTAA AACGGGTCAC 677 TCGCGCGGAT CCGAGTCGGG TCGGGTTAAC TAAAAAGTTG AAAACATTTC GGTTAAATTC 46931 ||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||| ||| GCGCGCGGAT CCGAGTCGGG TCGGGTTAAC TAAAAAGTTG AAAACAATTC GGTTAATTTC 737 TGTTATCAAC TGATTTATTG AAAATAATTT TTGGCCATTT AAATTAATTA ATAAATAATT 46871 |||||||||| ||||| |||| |||||||||| |||||||||| || | |||| |||||||||| TGTTATCAAC TGATTAATTG AAAATAATTT TTGGCCATTT AANNTTATTA ATAAATAATT 797 AAAAATAAAT TTTGTCCAAA AAATTATCTC TCGATC 46835 ||||| || |||||||||| ||| |||||| |||||| -AAAAT-AA- TTTGTCCAAA AAA-TATCTC TCGATC 829 hqPGS_C08HBa0060C12.1-_SGN-E538064+ (47590 46835) ******************************************************************************** EST sequence 318 +strand 572 n (File: SGN-E538071+) 1 ATTATAATTG CAGACTTAAA GGAGTATAAA ATCACTAAGA TTTTTGTCTC CACCAAAAAT 61 ACAGATTTAA ATAATTTCCT TAAGATTGTT GCCAATCTGT GTTAAGAAAA TCAGAAATTA 121 CTGGTTGTGA TAAATCATTC AGAAACACGA AGTAACTGAG ATTTTTAGAA CCACTAAATA 181 AGATGAACAT AAATTTATTT GTAAAAATAA TTTAATCTGT AAAACTTACC AGAATCTTGA 241 ATACTCTTTT TGATAATTTA GGAAAAAAAT CAAGTCCACT GAATTCACAG TGTCCCCTTA 301 AGGAAATTAT TCCCCTGTAG TATCCGAGGG TTGATTTGGA ATATAACCTC CCAGGGTAAA 361 ATGATCTTAA TCAGTAGAGT ATAGATACCA AAAACTCTAC TGTCAGCGAA TCAATCCACA 421 ACAGGAAAGT ACACGAAGAA AAATGTGTTT TTTAAGAAGT AGGAAGATCA GAAAATTCGT 481 TAGTAAATAT TCTGAAGACT GAATGGTATT TATAGGCAAG AATAATATAT TCTGAAAGGT 541 TGCAACTCTT TCAGAATTGA GACAACCATT AA Predicted gene structure (within gDNA segment 49050 to 46228): Exon 1 47590 47099 ( 492 n); cDNA 87 572 ( 486 n); score: 0.941 MATCH C08HBa0060C12.1- SGN-E538071+ 0.941 492 0.860 C PGS_C08HBa0060C12.1-_SGN-E538071+ (47590 47099) Alignment (genomic DNA sequence = upper lines): TGTTGCCAAT CTGTGTTAAG AAAATCAGAA ATTACTGGTT GTAATAAATC ATTCAGAAAC 47531 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGTTGCCAAT CTGTGTTAAG AAAATCAGAA ATTACTGGTT GTGATAAATC ATTCAGAAAC 146 ACGAAGTAAC TGAGATTTTT AGAACCAGTA AATAAGATGA ACAGAAATTT ATTTGTAAAA 47471 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| |||||| || ACGAAGTAAC TGAGATTTTT AGAACCACTA AATAAGATGA ACATAAATTT ATTTGT--AA 204 AAATAATTTA ATCTGTAAAA CTTATCAGAA TGTTGAATAC TCTTTTATTT CTCTTTTTAG 47411 |||||||||| |||||||||| |||| ||||| | |||||||| || ||| || | ||||| AAATAATTTA ATCTGTAAAA CTTACCAGAA TCTTGAATAC TC-TTT-TTG AT-AATTTAG 261 GAAGAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA GGAAATTATT CCCCTCTAGT 47351 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GAAAAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA GGAAATTATT CCCCTGTAGT 321 ATCCGAGGTT TGATTTGGAA TATAACCTCC CAGGGTAAAA TGATCTTAAT CAGTAGAGTA 47291 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGAGGGT TGATTTGGAA TATAACCTCC CAGGGTAAAA TGATCTTAAT CAGTAGAGTA 381 TAGATACCAA AAACTCTACT GTCAGCGAAT CAATTCCACA GCAGGAAAGT ACACGAAGAA 47231 |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| |||||||||| TAGATACCAA AAACTCTACT GTCAGCGAAT CAA-TCCACA ACAGGAAAGT ACACGAAGAA 440 ATATATGATT TTTAAGAAGA AGGAAGATCA GAAAATTCGT TAGAAAATAT TCTGAATACT 47171 | || || || ||||||||| |||||||||| |||||||||| ||| |||||| |||||| ||| AAATGTGTTT TTTAAGAAGT AGGAAGATCA GAAAATTCGT TAGTAAATAT TCTGAAGACT 500 GAATGGTATT TATAGGCAAG AATAATATAT TCTGAAAGGT TGCTACCCTT TCAGAATTGA 47111 |||||||||| |||||||||| |||||||||| |||||||||| ||| || ||| |||||||||| GAATGGTATT TATAGGCAAG AATAATATAT TCTGAAAGGT TGCAACTCTT TCAGAATTGA 560 CACGACCATT AA 47099 || |||||| || GACAACCATT AA 572 hqPGS_C08HBa0060C12.1-_SGN-E538071+ (47590 47099) ******************************************************************************** EST sequence 365 +strand 407 n (File: SGN-E268499+) 1 TTATAATTGC AGACTTAAAG GAGTATAAAA TCACTAAGAT TTTTGTCTCC ACCAAAAATA 61 CAGATTTAAA TAATTTCCTT AAGATTGTTG CCAATCTGTG TTAAGAAAAT CAGAAATTAC 121 TGGTTGTGAT AAATCATTCA GAAACACGAA GTAACTGAGA TTTTTAGAAC CACTAAATAA 181 GATGAACATA AATTTATTTG TAAAAATAAT TTAATCTGTA AAACTTACCA GAATCTTGAA 241 TACTCTTTTT GATAATTTAG GAAAAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA 301 GGAAATTATT CCCCTGTAGT ATCCGAGGTT TGATTTGGAA TATAACCTCC CAGGGTAAAA 361 TGATCTTAAT CAGTAGAGTA TAGATACCAA AAACTCTACT GTCAGCG Predicted gene structure (within gDNA segment 49040 to 46654): Exon 1 47590 47264 ( 327 n); cDNA 86 407 ( 322 n); score: 0.951 MATCH C08HBa0060C12.1- SGN-E268499+ 0.951 327 0.803 C PGS_C08HBa0060C12.1-_SGN-E268499+ (47590 47264) Alignment (genomic DNA sequence = upper lines): TGTTGCCAAT CTGTGTTAAG AAAATCAGAA ATTACTGGTT GTAATAAATC ATTCAGAAAC 47531 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGTTGCCAAT CTGTGTTAAG AAAATCAGAA ATTACTGGTT GTGATAAATC ATTCAGAAAC 145 ACGAAGTAAC TGAGATTTTT AGAACCAGTA AATAAGATGA ACAGAAATTT ATTTGTAAAA 47471 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| |||||| || ACGAAGTAAC TGAGATTTTT AGAACCACTA AATAAGATGA ACATAAATTT ATTTGT--AA 203 AAATAATTTA ATCTGTAAAA CTTATCAGAA TGTTGAATAC TCTTTTATTT CTCTTTTTAG 47411 |||||||||| |||||||||| |||| ||||| | |||||||| || ||| || | ||||| AAATAATTTA ATCTGTAAAA CTTACCAGAA TCTTGAATAC TC-TTT-TTG AT-AATTTAG 260 GAAGAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA GGAAATTATT CCCCTCTAGT 47351 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GAAAAAAATC AAGTCCACTG AATTCACAGT GTCCCCTTAA GGAAATTATT CCCCTGTAGT 320 ATCCGAGGTT TGATTTGGAA TATAACCTCC CAGGGTAAAA TGATCTTAAT CAGTAGAGTA 47291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGAGGTT TGATTTGGAA TATAACCTCC CAGGGTAAAA TGATCTTAAT CAGTAGAGTA 380 TAGATACCAA AAACTCTACT GTCAGCG 47264 |||||||||| |||||||||| ||||||| TAGATACCAA AAACTCTACT GTCAGCG 407 hqPGS_C08HBa0060C12.1-_SGN-E268499+ (47590 47264) ******************************************************************************** EST sequence 107 -strand 650 n (File: SGN-E392149-) 1 AATTTGGAAT GATTTGGGGA AGGAAATAGG AGAATTCGGA ACAGGGAAAT CGTCATATGT 61 TATAAACTTG ATTTGTACTG CCATTTCTTG GCAGTTATAC GCTGTTGGAT CAGTTGGATT 121 GGTTTACAAG GCTTTTGCTT TATTCTCAAA TGTGATAATC AATTTGGGAT CTTCAACCCC 181 CCCCCCCCTT GCAATGGTGT TCTTGAAAGA TAGAATGAAT GGATTGAAGG TGTTTTCATT 241 GTTATTGGGA TTATGGGGAT ATGCATCATA TATATATCAA CATTATCTCG ATGATTTAGA 301 GGCAAAAACA AGTGAAGTTA AATCCTCAGA TGATCAAGCT GATAATTTAT AATAAACTTA 361 CCTCATTCAA AGAATTTGAA TCATATATGT AAACGTGTTA AATAATGACA AAAATCCCAC 421 ATCGGTGATT AATGAGATGG GTGGACTCTT TATAAGGCTT GGGCAATCCT CCTCCCTTTG 481 AGCTAGCTTT TGGGGTGTGA GTTAGGCCTA AGACCTAATT TCACAAAACG TGAAGAGTTC 541 TATGTTATAA GTTCAATATG ATGTCGTTTA AAAAAGTGTA AATAGTTCAA AAAGTTTTAT 601 AAGAGATAAA TTAGTTAAAT TATTCTTTTT TAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 54876 to 46876): Exon 1 54154 54138 ( 17 n); cDNA 284 300 ( 17 n); score: 0.706 Intron 1 54137 53922 ( 216 n); Pd: 0.000 (s: 0), Pa: 0.699 (s: 0) Exon 2 53921 53909 ( 13 n); cDNA 301 313 ( 13 n); score: 0.769 Intron 2 53908 52065 (1844 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 52064 52047 ( 18 n); cDNA 314 330 ( 17 n); score: 0.778 Intron 3 52046 51803 ( 244 n); Pd: 0.276 (s: 0), Pa: 0.000 (s: 0) Exon 4 51802 51778 ( 25 n); cDNA 331 356 ( 26 n); score: 0.580 Intron 4 51777 51291 ( 487 n); Pd: 0.989 (s: 0), Pa: 0.000 (s: 0) Exon 5 51290 51260 ( 31 n); cDNA 357 386 ( 30 n); score: 0.710 Intron 5 51259 50704 ( 556 n); Pd: 0.593 (s: 0), Pa: 0.000 (s: 0) Exon 6 50703 50696 ( 8 n); cDNA 387 394 ( 8 n); score: 1.000 Intron 6 50695 48920 (1776 n); Pd: 1.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 7 48919 48789 ( 131 n); cDNA 395 525 ( 131 n); score: 0.931 Intron 7 48788 47535 (1254 n); Pd: 0.000 (s: 0.92), Pa: 0.806 (s: 0) Exon 8 47534 47526 ( 9 n); cDNA 526 534 ( 9 n); score: 0.778 PPA cDNA 632 650 MATCH C08HBa0060C12.1- SGN-E392149- 0.931 252 0.388 C PGS_C08HBa0060C12.1-_SGN-E392149- (54154 54138,53921 53909,52064 52047,51802 51778,51290 51260,50703 50696,48919 48789,47534 47526) Alignment (genomic DNA sequence = upper lines): TATCTCGTTT GTTCATAATT TCAGCCATGG CAAACTCAAC CGTGTTGGAG GTCGTAGCAG 54095 ||||||| | || | | TATCTCGATG ATTTAGA... .......... .......... .......... .......... 300 TTCCACCGAC AACCATATCC TGTTCACAGT ATTTGTGAAG TTATTATCAT GTACAACATT 54035 .......... .......... .......... .......... .......... .......... 300 TTTTAATTTG TAGAACTGTA CATATATATA GGTGTTCAGT TCAAGGTTCT CAATTAAGTC 53975 .......... .......... .......... .......... .......... .......... 300 TGAATTAAGC TTTACATAAT ATTTGATGCT AAATGACTCT TTTCTTAGTA CAGTCCAATA 53915 ||| | .......... .......... .......... .......... .......... ...GGCAAAA 307 ACAAGTTAGC AAACAACAGT TCAGACATCT AATGGAAACA ATCAAAATGC GCACCGATAA 53855 |||||| ACAAGT.... .......... .......... .......... .......... .......... 313 AACATACCAT AAGTAAGGCT TTGAGTTCAG TCATAGACAG AGGCATTTTG GAATCTGCTT 53795 .......... .......... .......... .......... .......... .......... 313 CATCTTTCAA CTTCAGCAAA ACTTGCAAAA AGTCCTTGCT TTCTTGACCA ACACCAGCTC 53735 .......... .......... .......... .......... .......... .......... 313 CCATCTCAGT ATTTCCATCC ATTTTCTGTC TTTGATCAAT CATGCTCTCA AATATCGTAT 53675 .......... .......... .......... .......... .......... .......... 313 CAAATCTCTT TGCCAACACT TTCATCTTCT TTGTAACACC CTGCAAATCG AACCAGTCCA 53615 .......... .......... .......... .......... .......... .......... 313 AGCAAATCGG AAACATTTGG AGTACCTAAC AGCTCAGTAT TCCATACACA ACATGCCTAA 53555 .......... .......... .......... .......... .......... .......... 313 ACTCTGCCCC AAGATTAGCT CTTTCCTCAC CCTTCACTGT GCCACCCCAT AACATGCTTG 53495 .......... .......... .......... .......... .......... .......... 313 TAATCACGTT AAACATAGTC AAGAACATCT TTTCACCAAC ATTCACAGGC AATCCGGCCT 53435 .......... .......... .......... .......... .......... .......... 313 GACTATAGAA GTAATTGATT CTGTCTAAGC TCCTTTTTCC TTAGTGCATA AACAGAATCT 53375 .......... .......... .......... .......... .......... .......... 313 AAAGCAGAAC CACCAAGCAT ATCACGAACA CAAACAGTTC TCAACATACG CCATTTCGGT 53315 .......... .......... .......... .......... .......... .......... 313 CCAAAAGGAT TCCAAACCGC CATATGACAT TTCTCTTCCA GCAGCAGGCA CATCTCTGTA 53255 .......... .......... .......... .......... .......... .......... 313 AGCAAATATG GTATCTTGTT CCTTAAGAAC TTCGCGAGCT AAGGCAGGCG AAGTAATAAT 53195 .......... .......... .......... .......... .......... .......... 313 AATGCCAAGT TTTATACCAA GCCAGAGTCT ACAAATGGGG CCATAAGTTT GGGAAAGAGA 53135 .......... .......... .......... .......... .......... .......... 313 AGCAAAATAG GTGCGAAGTT GAGGTTCAAC AGAATGGAGA TTACCTAGTA AAGGTAAAGC 53075 .......... .......... .......... .......... .......... .......... 313 TTTAGGCCCC GGTGGCAACG GGGGTTGTCC CTTTTTTGAC TTGTTAGTGA AAAGCCAAAG 53015 .......... .......... .......... .......... .......... .......... 313 AAACCATCGT AAACCTATAA TACCAAGAAC ATAGGATAAA AATGCACCTT TTTTGCTCAA 52955 .......... .......... .......... .......... .......... .......... 313 TATTTGATTC TTGCCAGGGA AATGAGAAAG AATCAAACAG AGGTTTGGAG AATTTGAGAG 52895 .......... .......... .......... .......... .......... .......... 313 ACATTGTTTG AGCCTAAGAA GGAAATGGAA ATTGGCAGAA CCAATGTAGT GGGAAGCTCA 52835 .......... .......... .......... .......... .......... .......... 313 AGGCTTTTTT GATTCAAGAA AGTTTTCTTC CTTTGTCAAA GATTTGGCAG CCATATATAT 52775 .......... .......... .......... .......... .......... .......... 313 TTAAATTTGG CAGCCATGAA TGTTGAGATT TTGCACCCAT AAAAGTTGAG ATTTGGCAGC 52715 .......... .......... .......... .......... .......... .......... 313 TATAATATAA TTGATATATT TGGCAGTTAA TAACCCAGAT GGCCACTCAA CTAATACTTC 52655 .......... .......... .......... .......... .......... .......... 313 TTCTCATTCA ACTTACCGTT TTAGTTTTTA CCTCAAAGTC TTAGATTTTT TTCACAGAAT 52595 .......... .......... .......... .......... .......... .......... 313 TTCTAAAATC AAGTCACTCA ACTATTGAGT TTTCATTTAG AAAGTCACCT AATTAATTTA 52535 .......... .......... .......... .......... .......... .......... 313 AATAATTTTT TCATTAAATT TTGTTGAAAT GCAAATTTTG AGTTAAACTA ATGAAAAATA 52475 .......... .......... .......... .......... .......... .......... 313 ATTGTTGAAA TGCCCCAAAC ATCATTATGA ATGACATCAA AAACACTTGC AAAACAACTA 52415 .......... .......... .......... .......... .......... .......... 313 TCAAAATTAG GAAAAGGCTG AGTTTTATTT TTGCAAAACT TGCATGTGTA AGACAATCAA 52355 .......... .......... .......... .......... .......... .......... 313 AGGTAGTTAC TTAAAATTGA TTTTTATTTC TCAAACAACC GAAAATTCCA TAAATGGAAC 52295 .......... .......... .......... .......... .......... .......... 313 AAAACATTAG AACTTGGATG CCCTAGATGC TTATGCCAAA CTTAGTCTTA CTAGCTAGTT 52235 .......... .......... .......... .......... .......... .......... 313 GTAGAAGTAC AAACAAAAAT AAAACACGAG GAATGAAAGA GTGTATGGGA AACAATCTTC 52175 .......... .......... .......... .......... .......... .......... 313 CAACTTAAGG TCACTTCGCA ATTATCATCT CCGACATGTG ATTCTTTCAT ATCTTTCTTC 52115 .......... .......... .......... .......... .......... .......... 313 ACTTCGAATG TAGCCTAGTT GGAATCATGA TTTTGCCATA ACACCTTAAC GAAGGCTATA 52055 ||| | || | .......... .......... .......... .......... .......... GAA-GTTAAA 322 TCCACAGAGT CACCTATCAA TTCTGAATTG TCTTAAGCCT TTCTTGAATA TTATTACCTT 51995 ||| |||| TCCTCAGA.. .......... .......... .......... .......... .......... 330 TTTCTCGGGC TTCATGAACA AAATTGGGCC AATCAGCTGT ACTCTACTCG GTTTGAACCA 51935 .......... .......... .......... .......... .......... .......... 330 ACCTATGGGC GATCTACATT GTTGTCTGTA CAAAGGTCGC ACACAACCAT TTAGATGCTC 51875 .......... .......... .......... .......... .......... .......... 330 GTCGGATAGC TGTTGTTCTT ATTGAACTTT ATCAACAGAA GGTGATCATC CCATTTACCT 51815 .......... .......... .......... .......... .......... .......... 330 CATAAATCCA TTAGAT-AAG ATCGTAACAT ATCATCAAGC ATTTGAATGG TCCTTCTGCT 51756 ||| ||| | ||| | || || || .......... ..TGATCAAG CTGATAATTT ATAATAAA.. .......... .......... 356 TGCACGTCTA TCAGCTGGTG GAAAAATCAT GCTAAGATTA ACAAGTGTGC CCAAGCCTTT 51696 .......... .......... .......... .......... .......... .......... 356 CTGGAACGAC TGCTAGAAGT GAGTGGCGTA CTGTACACCT CAGAAATGAT CACCTCCGGA 51636 .......... .......... .......... .......... .......... .......... 356 TGCCATCTGG AACACAGAAA CGACCATTGT GAACGAGGAA ACTGTCAGCA GAAGAATAAC 51576 .......... .......... .......... .......... .......... .......... 356 TTGATTAGGT ATTATAACTT GTGTTGAGAA GATTTCGGGA AGAAATAGAA TCAAATACTG 51516 .......... .......... .......... .......... .......... .......... 356 GGGATACAAT CATTCAGGCA GACTGAGTTG CAGCTTTCAT ATTCTTGATG TGTATCAACT 51456 .......... .......... .......... .......... .......... .......... 356 TTATAGAAAC CATTGAATTA GTTAGAAATG GATCCAAGGA TCCAAATTAC AGGGAACGCG 51396 .......... .......... .......... .......... .......... .......... 356 TCTCCATATA TAATTCATCG TACAAAAGAG AGAAGTATAA TCACTACAAA CACATTTCAA 51336 .......... .......... .......... .......... .......... .......... 356 TAGTTATATA AAAAACACTA GCAAAAGGTA GGAAACAGGA GATAGCAAAC CTCAATGAGA 51276 | || |||| | | | .......... .......... .......... .......... .....CTTAC CTCATTCA-A 370 ATAATTACAA CCATATGTGC TCATTAAAAC CATACTTTTA TGGATACCTT ACACCACAAA 51216 | |||| || ||||| AGAATTTGAA TCATAT.... .......... .......... .......... .......... 386 TTAAAATATA CAGATTTATC AATAAGCATA TAATAATTAC TGCAGTACTG ATATATGTTA 51156 .......... .......... .......... .......... .......... .......... 386 TTGTCCATTT GGATAGAGCA ACATGTTTTA TTTTACTCAT AGAGTGTTGG ATTGGATAAT 51096 .......... .......... .......... .......... .......... .......... 386 CTTGGAGTAG GTATAGCCAC CAGAGGCATC TTCTTCTTCA GAACAATCCC AAACTTCTCT 51036 .......... .......... .......... .......... .......... .......... 386 GTGAGGTCTA ATGTCTCTCC TTCAGGCAAT TTCCAGTCGA AAGAATGCAC GAGTGAAGCC 50976 .......... .......... .......... .......... .......... .......... 386 AGTGAATACA TGAACATCCT CTCTGCCATG CCTATCCCCG CACAGATTCT TCTGCCAGAA 50916 .......... .......... .......... .......... .......... .......... 386 CCAAATGGGA AATAGTTGAA ATCATTTCCA CTATAATCCC ACTTATTGTC CAAAAATCTC 50856 .......... .......... .......... .......... .......... .......... 386 TCTGGACGGA ACTCAGTTGG ATTTTCCCAT ATAGAAGGAT CTCGCTGTAT AGCCCATACA 50796 .......... .......... .......... .......... .......... .......... 386 TTTATAAATA CACGAGATCC TTCAGGAATA GTGTATCCTC CAACAGTGAC TGTCTCACTA 50736 .......... .......... .......... .......... .......... .......... 386 GGACAATGTG GCACCAAGAG TGGAAGAGCT GGATGTAAAC GCAAGGCTTC TTTCATAACT 50676 |||||||| .......... .......... .......... ..ATGTAAAC .......... .......... 394 GCATAGAAAT ATGGCAACTG TTGAATATGA GACTCTTCCA CTATGTTATC TTTTCCCACG 50616 .......... .......... .......... .......... .......... .......... 394 ACTGTATCTA GTTCTTGTTG TAATTTCCTC AAGATATCTC GTTTGTTCAT AATCTCAGCC 50556 .......... .......... .......... .......... .......... .......... 394 ATGGCAAACT CAACTACGTT GGCGGTAGTG TCAGTTCCAC CAACAACCAT ATCCTGTTCA 50496 .......... .......... .......... .......... .......... .......... 394 TGGTATTCGT AAAGTTATTA TCATGTACAA CAATTTTTTA TTTGTACAAC TGTATATAGG 50436 .......... .......... .......... .......... .......... .......... 394 TGTTCAGCTT AAGGTTCTCA CTTTAGTCTT CACATATTTT TGATATGATT AAAGCCTATA 50376 .......... .......... .......... .......... .......... .......... 394 TATTGTTTGA TGCTAAATGA CTCTTTCCTT AGTGCAGTCC AATAAATAGT TAGCAACCAA 50316 .......... .......... .......... .......... .......... .......... 394 CAGTTCAGTC ATCTAATGGA AACAATCAAA ATCGCATATA CTGGAAGTAA CAGATCATAC 50256 .......... .......... .......... .......... .......... .......... 394 CATGAGTAAG GCTTTGAGTT CAATCATAGT CAGAGGCATT TTGGAATCTG CTTCATCTTT 50196 .......... .......... .......... .......... .......... .......... 394 CAACTTGAGC AAAACTTGCA AAAAATCCTT GCTTTCTTGA CCAACACCAG CTCCCATCTC 50136 .......... .......... .......... .......... .......... .......... 394 AGAATTTCTA TCCATTTTCT GTCTTTGATC AATCATGCTC TCAAATATCG CATCAAATCT 50076 .......... .......... .......... .......... .......... .......... 394 CTTTGCCAAC ACTTTCATCT TCTTTGTAAC ACCCTGCAAA TCGAACCACT CCAAGCCCGG 50016 .......... .......... .......... .......... .......... .......... 394 ATAAAAATCA GAAACATTTG GAGTACCTAA CAGCTCAGTC ATTTCATTCA CAACATGCCT 49956 .......... .......... .......... .......... .......... .......... 394 AAACTCTGCC CCAAGATTAG CTCTTTCCTC ACCCTTCACT GTAGCACCCC ATAACATGCT 49896 .......... .......... .......... .......... .......... .......... 394 TGTAATCACA TTAAGAATAG TCAAGAACAT CTGTTCACCA ACATTCACAG GCGATCCTGC 49836 .......... .......... .......... .......... .......... .......... 394 CTTGTTATAG AAGTAATTGA TTGTCTGTCT AAGCTCCTTT TTCCTTAATG CATAAACAGA 49776 .......... .......... .......... .......... .......... .......... 394 ATCTAAAGTA GAAGAACTAA GCATATCACG AACACAAACC TTCCTCAACA TACGCCATTT 49716 .......... .......... .......... .......... .......... .......... 394 GGGTCCATAA GGAGTCCAAG TTATGTCATT GCCACCATAT GTAGCTTCTC TACCAGCAGC 49656 .......... .......... .......... .......... .......... .......... 394 AGGGACATCT CTGTTAGCAA AAATGGTATC TTGATCCTTA AGAACCTCAC GAGCTAATTC 49596 .......... .......... .......... .......... .......... .......... 394 AGGAGAAGTA ATAATAATCC CAATTTTTTT ACCAAGCCAG AGTCTACATA TGGGGCCATA 49536 .......... .......... .......... .......... .......... .......... 394 CGTTTGGGAA AGAGATGCAA AATAGGTATG AAGTTGAGGT TCAAGAGAAT GAAGATTACC 49476 .......... .......... .......... .......... .......... .......... 394 TATCAAGGGC AAAGCTTTAG GGCCTGGTGG CAACCCCTTG TTTGACTTTC TGATGAAAAA 49416 .......... .......... .......... .......... .......... .......... 394 CCATAGTAAA GCTAAAACAC CAAGAAAACA GGATAAAAAC ACACCCTTTT GCTCAACAGT 49356 .......... .......... .......... .......... .......... .......... 394 GAGTTCTTGA AGGGGCCATG GAAAAAAATC ATCAAAAAGG GATTTGATAG ACATTGTTAG 49296 .......... .......... .......... .......... .......... .......... 394 AGGGATATGA AACAAGTGAT GGAAAGCTTG AAGCTTTTGC AGGACTTAAA AAGAGAATTG 49236 .......... .......... .......... .......... .......... .......... 394 ATATTTCGCA AGAAGACAAA AAGAAGTTCC GCATTAAATC TCATCATGGT CCAGTCGGTC 49176 .......... .......... .......... .......... .......... .......... 394 AAAATTAATG GAGGAGTATT TGTTTTACGT ATTTTTTATT GGTTGAAGTC CAAAATCAAA 49116 .......... .......... .......... .......... .......... .......... 394 TCCTTATGGA TCAAAAATTG TTAAATTGAA AATATCTAAC TAATTTGGTT ATTCATTTAG 49056 .......... .......... .......... .......... .......... .......... 394 TGCTAATGGA ATTATTTAAA CTTAGTAGTT TTGATTTAAT TTTTTTTTTT AAATATATAT 48996 .......... .......... .......... .......... .......... .......... 394 ATATATAAAT AATATCTTTC TATTTTTAAA AAAATATATG AAAAAAATAA TTTTAAATCC 48936 .......... .......... .......... .......... .......... .......... 394 AATAAATCAA ATATCTATGT TAAAGAATGA CAAAAGTCTC ACATCGGTGA TTAATGAGAT 48876 ||| |||| ||||| ||||| || | |||||||||| |||||||||| .......... ......GTGT TAAATAATGA CAAAAATCCC ACATCGGTGA TTAATGAGAT 438 GGGTGGACTC TTTATAAGGC TCGGGCAATC CTCCTCCTTT TAAGCTAGCT TTTGGGGTGT 48816 |||||||||| |||||||||| | |||||||| ||||||| || | |||||||| |||||||||| GGGTGGACTC TTTATAAGGC TTGGGCAATC CTCCTCCCTT TGAGCTAGCT TTTGGGGTGT 498 GAATTAGGCC TAAGACCTAA CTTCACAATC TATACTAGAT TTTTGAATCC TATGGGCAGA 48756 || ||||||| |||||||||| |||||| GAGTTAGGCC TAAGACCTAA TTTCACA... .......... .......... .......... 525 GGCCAAACTT ATTGGTAAAC CACATATATT GTTCCTCCTT TATTATTGAT GTTCGAATGT 48696 .......... .......... .......... .......... .......... .......... 525 TGTCTATATA CCATTCCTTG TCCTTACTTT ATTTTACTGT TCGTTTTTTA AATTCAGAGA 48636 .......... .......... .......... .......... .......... .......... 525 GTAAAATAAA AAATTGAGTC TCGAATCATC TTCTAAAAAT TCTTTTATTC TCTATTTATA 48576 .......... .......... .......... .......... .......... .......... 525 GAGAAGAAGT GAAATAAAAT CCAAATTTTG GACAACTACT ATGTGTCTCC TTTATTTCAG 48516 .......... .......... .......... .......... .......... .......... 525 TACGTCATTA ATTTAATATT ATTTTTATTC TATGTAACTA ACATATTATT TTTCATATAA 48456 .......... .......... .......... .......... .......... .......... 525 GGCTATTAAT TAAATTTCTA ATATTGTTAG CTTTAATTAA ATTTATATAA TGTTTTTTTT 48396 .......... .......... .......... .......... .......... .......... 525 AAAAAAAAAT CACCATCATT AAGAGTTGTT TATACTTTTT ATAAAGTTTT TCAATTATTT 48336 .......... .......... .......... .......... .......... .......... 525 TTAATTATCC CCCTCGTATT AAGTTTCTAT GGCACACTAA TACAATAGAA AAATCAATAT 48276 .......... .......... .......... .......... .......... .......... 525 TTGAGATAGA TTGAATGTAA CATTCACATG CATAAATGAA TGAGTATTTT ATGGCAATTC 48216 .......... .......... .......... .......... .......... .......... 525 AATTTTAGGA TAATCTTCTG GAAAGTTAAT ATTGAAAAGT TATAAACGAA AATTAGAACA 48156 .......... .......... .......... .......... .......... .......... 525 AATGAATACT AATTAGTAAT AATTGATACG ATAAAGTAAA TGAATACAAG TGATATTAAA 48096 .......... .......... .......... .......... .......... .......... 525 GCGAATAAAT ATATATACCA TCTTTGTTGC TACTTGCTTG TATACACCAC TGTACTATAT 48036 .......... .......... .......... .......... .......... .......... 525 CACATATCTT GACTTAGTTG CATTTGTTGT GCGAGCAAAT ACAGCTGTAA CATGATTTTA 47976 .......... .......... .......... .......... .......... .......... 525 TTTGTTGTGT AAACGAATAT ATTGATACAT ATTACATTTG TTGGGCAAAC AAATATAATA 47916 .......... .......... .......... .......... .......... .......... 525 GCTATACTCA TTTCACAAAC GAATATATTG AATATAATCG TCTGACCATC AAATTTTGCT 47856 .......... .......... .......... .......... .......... .......... 525 ATGAATGATA ATTACGGTAA CTATTGTTTC ATTTGATAAT TAGCATCCAC ACTGGGCAAA 47796 .......... .......... .......... .......... .......... .......... 525 GGAATGAGAT GTATCGGTAT CGTTTCGGTT CGTTTCGGTT TGATTGCCTA GGGGATATCT 47736 .......... .......... .......... .......... .......... .......... 525 CGAACCGAAA CACGGAACGG AATGAAACCG AGGTTTGATA TCGGTGTACT GGTACCAGTT 47676 .......... .......... .......... .......... .......... .......... 525 TATTCTGGTC TGGTTCCGAT TAATTAATTT ATATTATATA TTTATAAATT ATAATTTAAA 47616 .......... .......... .......... .......... .......... .......... 525 TTTTATATTA TTAATAAATA TTACCTGTTG CCAATCTGTG TTAAGAAAAT CAGAAATTAC 47556 .......... .......... .......... .......... .......... .......... 525 TGGTTGTAAT AAATCATTCA GAAACACGAA 47526 |||| ||| .......... .......... .AAACGTGAA 534 hqPGS_C08HBa0060C12.1-_SGN-E392149- (51290 51260,50703 50696,48919 48789) ******************************************************************************** EST sequence 238 -strand 739 n (File: SGN-E369423-) 1 AAAGTATCAC GTTAAAACAA GTCATGAAAA TGTCGTTTTT CATAGGTTTT TTCGTGACGA 61 TTGCTTCGTT GATTGGGCTT TTCGCGAGCG GTAATTGGAA TGATTTGGAG AAGGAAATAG 121 GAGAATACAG AACAGGGAAA TCGTCATATG TTATAAACTT GATTTGTACT GCCATTTCTT 181 GGCAGTTATA CGCTGTTGGA TCAGTTGGAT TGGTTTACAA GGCTTCTGCT TTATTCTCAA 241 ATGTGATAAT CAATTTGGGA TCTTCAACTG TGCCAATTTT TGCAATGGTG TTCTTGAAAG 301 ATAGAATGAA TGGATTGAAG GTGTTTTCAT TGTTATTGGG ATTATGGGGA TATGCATCAT 361 ATATATATCA ACATTATCTC GATGATTTAG AGGCAAAAAC AAGTGAAGTT AAATCCTCAG 421 ATGATCAAGC TGATAATTTA TAATAAACTT ACCTCATTCA AAGAATTTGA ATCATATATG 481 TAAACGTGTT AAATAATGAC AAAAATCCCA CATCGGTGAT TAATGAGATG GGTGGACTCT 541 TTATAAGGCT TGGGCAATCC TCCTCCCTTT GAGCTAGCTT TTGGGGTGTG AGTTAGGCCT 601 AAGACCTAAT TTCACAAAAC GTGAAGAGTT CTATGTTATA AGTTCAATAT GATGTCGTTT 661 AAAAAAGTGT AAATAGTTCA AAAAGTTTTA TAAGAGATAA ATTAGTTAAA TTATTCTTTT 721 TAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 55186 to 46896): Exon 1 54154 54138 ( 17 n); cDNA 375 391 ( 17 n); score: 0.706 Intron 1 54137 53922 ( 216 n); Pd: 0.000 (s: 0), Pa: 0.699 (s: 0) Exon 2 53921 53909 ( 13 n); cDNA 392 404 ( 13 n); score: 0.769 Intron 2 53908 52065 (1844 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 52064 52047 ( 18 n); cDNA 405 421 ( 17 n); score: 0.778 Intron 3 52046 51803 ( 244 n); Pd: 0.276 (s: 0), Pa: 0.000 (s: 0) Exon 4 51802 51778 ( 25 n); cDNA 422 447 ( 26 n); score: 0.580 Intron 4 51777 51291 ( 487 n); Pd: 0.989 (s: 0), Pa: 0.000 (s: 0) Exon 5 51290 51260 ( 31 n); cDNA 448 477 ( 30 n); score: 0.710 Intron 5 51259 50704 ( 556 n); Pd: 0.593 (s: 0), Pa: 0.000 (s: 0) Exon 6 50703 50696 ( 8 n); cDNA 478 485 ( 8 n); score: 1.000 Intron 6 50695 48920 (1776 n); Pd: 1.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 7 48919 48789 ( 131 n); cDNA 486 616 ( 131 n); score: 0.931 Intron 7 48788 47535 (1254 n); Pd: 0.000 (s: 0.92), Pa: 0.806 (s: 0) Exon 8 47534 47526 ( 9 n); cDNA 617 625 ( 9 n); score: 0.778 PPA cDNA 722 739 MATCH C08HBa0060C12.1- SGN-E369423- 0.931 252 0.341 C PGS_C08HBa0060C12.1-_SGN-E369423- (54154 54138,53921 53909,52064 52047,51802 51778,51290 51260,50703 50696,48919 48789,47534 47526) Alignment (genomic DNA sequence = upper lines): TATCTCGTTT GTTCATAATT TCAGCCATGG CAAACTCAAC CGTGTTGGAG GTCGTAGCAG 54095 ||||||| | || | | TATCTCGATG ATTTAGA... .......... .......... .......... .......... 391 TTCCACCGAC AACCATATCC TGTTCACAGT ATTTGTGAAG TTATTATCAT GTACAACATT 54035 .......... .......... .......... .......... .......... .......... 391 TTTTAATTTG TAGAACTGTA CATATATATA GGTGTTCAGT TCAAGGTTCT CAATTAAGTC 53975 .......... .......... .......... .......... .......... .......... 391 TGAATTAAGC TTTACATAAT ATTTGATGCT AAATGACTCT TTTCTTAGTA CAGTCCAATA 53915 ||| | .......... .......... .......... .......... .......... ...GGCAAAA 398 ACAAGTTAGC AAACAACAGT TCAGACATCT AATGGAAACA ATCAAAATGC GCACCGATAA 53855 |||||| ACAAGT.... .......... .......... .......... .......... .......... 404 AACATACCAT AAGTAAGGCT TTGAGTTCAG TCATAGACAG AGGCATTTTG GAATCTGCTT 53795 .......... .......... .......... .......... .......... .......... 404 CATCTTTCAA CTTCAGCAAA ACTTGCAAAA AGTCCTTGCT TTCTTGACCA ACACCAGCTC 53735 .......... .......... .......... .......... .......... .......... 404 CCATCTCAGT ATTTCCATCC ATTTTCTGTC TTTGATCAAT CATGCTCTCA AATATCGTAT 53675 .......... .......... .......... .......... .......... .......... 404 CAAATCTCTT TGCCAACACT TTCATCTTCT TTGTAACACC CTGCAAATCG AACCAGTCCA 53615 .......... .......... .......... .......... .......... .......... 404 AGCAAATCGG AAACATTTGG AGTACCTAAC AGCTCAGTAT TCCATACACA ACATGCCTAA 53555 .......... .......... .......... .......... .......... .......... 404 ACTCTGCCCC AAGATTAGCT CTTTCCTCAC CCTTCACTGT GCCACCCCAT AACATGCTTG 53495 .......... .......... .......... .......... .......... .......... 404 TAATCACGTT AAACATAGTC AAGAACATCT TTTCACCAAC ATTCACAGGC AATCCGGCCT 53435 .......... .......... .......... .......... .......... .......... 404 GACTATAGAA GTAATTGATT CTGTCTAAGC TCCTTTTTCC TTAGTGCATA AACAGAATCT 53375 .......... .......... .......... .......... .......... .......... 404 AAAGCAGAAC CACCAAGCAT ATCACGAACA CAAACAGTTC TCAACATACG CCATTTCGGT 53315 .......... .......... .......... .......... .......... .......... 404 CCAAAAGGAT TCCAAACCGC CATATGACAT TTCTCTTCCA GCAGCAGGCA CATCTCTGTA 53255 .......... .......... .......... .......... .......... .......... 404 AGCAAATATG GTATCTTGTT CCTTAAGAAC TTCGCGAGCT AAGGCAGGCG AAGTAATAAT 53195 .......... .......... .......... .......... .......... .......... 404 AATGCCAAGT TTTATACCAA GCCAGAGTCT ACAAATGGGG CCATAAGTTT GGGAAAGAGA 53135 .......... .......... .......... .......... .......... .......... 404 AGCAAAATAG GTGCGAAGTT GAGGTTCAAC AGAATGGAGA TTACCTAGTA AAGGTAAAGC 53075 .......... .......... .......... .......... .......... .......... 404 TTTAGGCCCC GGTGGCAACG GGGGTTGTCC CTTTTTTGAC TTGTTAGTGA AAAGCCAAAG 53015 .......... .......... .......... .......... .......... .......... 404 AAACCATCGT AAACCTATAA TACCAAGAAC ATAGGATAAA AATGCACCTT TTTTGCTCAA 52955 .......... .......... .......... .......... .......... .......... 404 TATTTGATTC TTGCCAGGGA AATGAGAAAG AATCAAACAG AGGTTTGGAG AATTTGAGAG 52895 .......... .......... .......... .......... .......... .......... 404 ACATTGTTTG AGCCTAAGAA GGAAATGGAA ATTGGCAGAA CCAATGTAGT GGGAAGCTCA 52835 .......... .......... .......... .......... .......... .......... 404 AGGCTTTTTT GATTCAAGAA AGTTTTCTTC CTTTGTCAAA GATTTGGCAG CCATATATAT 52775 .......... .......... .......... .......... .......... .......... 404 TTAAATTTGG CAGCCATGAA TGTTGAGATT TTGCACCCAT AAAAGTTGAG ATTTGGCAGC 52715 .......... .......... .......... .......... .......... .......... 404 TATAATATAA TTGATATATT TGGCAGTTAA TAACCCAGAT GGCCACTCAA CTAATACTTC 52655 .......... .......... .......... .......... .......... .......... 404 TTCTCATTCA ACTTACCGTT TTAGTTTTTA CCTCAAAGTC TTAGATTTTT TTCACAGAAT 52595 .......... .......... .......... .......... .......... .......... 404 TTCTAAAATC AAGTCACTCA ACTATTGAGT TTTCATTTAG AAAGTCACCT AATTAATTTA 52535 .......... .......... .......... .......... .......... .......... 404 AATAATTTTT TCATTAAATT TTGTTGAAAT GCAAATTTTG AGTTAAACTA ATGAAAAATA 52475 .......... .......... .......... .......... .......... .......... 404 ATTGTTGAAA TGCCCCAAAC ATCATTATGA ATGACATCAA AAACACTTGC AAAACAACTA 52415 .......... .......... .......... .......... .......... .......... 404 TCAAAATTAG GAAAAGGCTG AGTTTTATTT TTGCAAAACT TGCATGTGTA AGACAATCAA 52355 .......... .......... .......... .......... .......... .......... 404 AGGTAGTTAC TTAAAATTGA TTTTTATTTC TCAAACAACC GAAAATTCCA TAAATGGAAC 52295 .......... .......... .......... .......... .......... .......... 404 AAAACATTAG AACTTGGATG CCCTAGATGC TTATGCCAAA CTTAGTCTTA CTAGCTAGTT 52235 .......... .......... .......... .......... .......... .......... 404 GTAGAAGTAC AAACAAAAAT AAAACACGAG GAATGAAAGA GTGTATGGGA AACAATCTTC 52175 .......... .......... .......... .......... .......... .......... 404 CAACTTAAGG TCACTTCGCA ATTATCATCT CCGACATGTG ATTCTTTCAT ATCTTTCTTC 52115 .......... .......... .......... .......... .......... .......... 404 ACTTCGAATG TAGCCTAGTT GGAATCATGA TTTTGCCATA ACACCTTAAC GAAGGCTATA 52055 ||| | || | .......... .......... .......... .......... .......... GAA-GTTAAA 413 TCCACAGAGT CACCTATCAA TTCTGAATTG TCTTAAGCCT TTCTTGAATA TTATTACCTT 51995 ||| |||| TCCTCAGA.. .......... .......... .......... .......... .......... 421 TTTCTCGGGC TTCATGAACA AAATTGGGCC AATCAGCTGT ACTCTACTCG GTTTGAACCA 51935 .......... .......... .......... .......... .......... .......... 421 ACCTATGGGC GATCTACATT GTTGTCTGTA CAAAGGTCGC ACACAACCAT TTAGATGCTC 51875 .......... .......... .......... .......... .......... .......... 421 GTCGGATAGC TGTTGTTCTT ATTGAACTTT ATCAACAGAA GGTGATCATC CCATTTACCT 51815 .......... .......... .......... .......... .......... .......... 421 CATAAATCCA TTAGAT-AAG ATCGTAACAT ATCATCAAGC ATTTGAATGG TCCTTCTGCT 51756 ||| ||| | ||| | || || || .......... ..TGATCAAG CTGATAATTT ATAATAAA.. .......... .......... 447 TGCACGTCTA TCAGCTGGTG GAAAAATCAT GCTAAGATTA ACAAGTGTGC CCAAGCCTTT 51696 .......... .......... .......... .......... .......... .......... 447 CTGGAACGAC TGCTAGAAGT GAGTGGCGTA CTGTACACCT CAGAAATGAT CACCTCCGGA 51636 .......... .......... .......... .......... .......... .......... 447 TGCCATCTGG AACACAGAAA CGACCATTGT GAACGAGGAA ACTGTCAGCA GAAGAATAAC 51576 .......... .......... .......... .......... .......... .......... 447 TTGATTAGGT ATTATAACTT GTGTTGAGAA GATTTCGGGA AGAAATAGAA TCAAATACTG 51516 .......... .......... .......... .......... .......... .......... 447 GGGATACAAT CATTCAGGCA GACTGAGTTG CAGCTTTCAT ATTCTTGATG TGTATCAACT 51456 .......... .......... .......... .......... .......... .......... 447 TTATAGAAAC CATTGAATTA GTTAGAAATG GATCCAAGGA TCCAAATTAC AGGGAACGCG 51396 .......... .......... .......... .......... .......... .......... 447 TCTCCATATA TAATTCATCG TACAAAAGAG AGAAGTATAA TCACTACAAA CACATTTCAA 51336 .......... .......... .......... .......... .......... .......... 447 TAGTTATATA AAAAACACTA GCAAAAGGTA GGAAACAGGA GATAGCAAAC CTCAATGAGA 51276 | || |||| | | | .......... .......... .......... .......... .....CTTAC CTCATTCA-A 461 ATAATTACAA CCATATGTGC TCATTAAAAC CATACTTTTA TGGATACCTT ACACCACAAA 51216 | |||| || ||||| AGAATTTGAA TCATAT.... .......... .......... .......... .......... 477 TTAAAATATA CAGATTTATC AATAAGCATA TAATAATTAC TGCAGTACTG ATATATGTTA 51156 .......... .......... .......... .......... .......... .......... 477 TTGTCCATTT GGATAGAGCA ACATGTTTTA TTTTACTCAT AGAGTGTTGG ATTGGATAAT 51096 .......... .......... .......... .......... .......... .......... 477 CTTGGAGTAG GTATAGCCAC CAGAGGCATC TTCTTCTTCA GAACAATCCC AAACTTCTCT 51036 .......... .......... .......... .......... .......... .......... 477 GTGAGGTCTA ATGTCTCTCC TTCAGGCAAT TTCCAGTCGA AAGAATGCAC GAGTGAAGCC 50976 .......... .......... .......... .......... .......... .......... 477 AGTGAATACA TGAACATCCT CTCTGCCATG CCTATCCCCG CACAGATTCT TCTGCCAGAA 50916 .......... .......... .......... .......... .......... .......... 477 CCAAATGGGA AATAGTTGAA ATCATTTCCA CTATAATCCC ACTTATTGTC CAAAAATCTC 50856 .......... .......... .......... .......... .......... .......... 477 TCTGGACGGA ACTCAGTTGG ATTTTCCCAT ATAGAAGGAT CTCGCTGTAT AGCCCATACA 50796 .......... .......... .......... .......... .......... .......... 477 TTTATAAATA CACGAGATCC TTCAGGAATA GTGTATCCTC CAACAGTGAC TGTCTCACTA 50736 .......... .......... .......... .......... .......... .......... 477 GGACAATGTG GCACCAAGAG TGGAAGAGCT GGATGTAAAC GCAAGGCTTC TTTCATAACT 50676 |||||||| .......... .......... .......... ..ATGTAAAC .......... .......... 485 GCATAGAAAT ATGGCAACTG TTGAATATGA GACTCTTCCA CTATGTTATC TTTTCCCACG 50616 .......... .......... .......... .......... .......... .......... 485 ACTGTATCTA GTTCTTGTTG TAATTTCCTC AAGATATCTC GTTTGTTCAT AATCTCAGCC 50556 .......... .......... .......... .......... .......... .......... 485 ATGGCAAACT CAACTACGTT GGCGGTAGTG TCAGTTCCAC CAACAACCAT ATCCTGTTCA 50496 .......... .......... .......... .......... .......... .......... 485 TGGTATTCGT AAAGTTATTA TCATGTACAA CAATTTTTTA TTTGTACAAC TGTATATAGG 50436 .......... .......... .......... .......... .......... .......... 485 TGTTCAGCTT AAGGTTCTCA CTTTAGTCTT CACATATTTT TGATATGATT AAAGCCTATA 50376 .......... .......... .......... .......... .......... .......... 485 TATTGTTTGA TGCTAAATGA CTCTTTCCTT AGTGCAGTCC AATAAATAGT TAGCAACCAA 50316 .......... .......... .......... .......... .......... .......... 485 CAGTTCAGTC ATCTAATGGA AACAATCAAA ATCGCATATA CTGGAAGTAA CAGATCATAC 50256 .......... .......... .......... .......... .......... .......... 485 CATGAGTAAG GCTTTGAGTT CAATCATAGT CAGAGGCATT TTGGAATCTG CTTCATCTTT 50196 .......... .......... .......... .......... .......... .......... 485 CAACTTGAGC AAAACTTGCA AAAAATCCTT GCTTTCTTGA CCAACACCAG CTCCCATCTC 50136 .......... .......... .......... .......... .......... .......... 485 AGAATTTCTA TCCATTTTCT GTCTTTGATC AATCATGCTC TCAAATATCG CATCAAATCT 50076 .......... .......... .......... .......... .......... .......... 485 CTTTGCCAAC ACTTTCATCT TCTTTGTAAC ACCCTGCAAA TCGAACCACT CCAAGCCCGG 50016 .......... .......... .......... .......... .......... .......... 485 ATAAAAATCA GAAACATTTG GAGTACCTAA CAGCTCAGTC ATTTCATTCA CAACATGCCT 49956 .......... .......... .......... .......... .......... .......... 485 AAACTCTGCC CCAAGATTAG CTCTTTCCTC ACCCTTCACT GTAGCACCCC ATAACATGCT 49896 .......... .......... .......... .......... .......... .......... 485 TGTAATCACA TTAAGAATAG TCAAGAACAT CTGTTCACCA ACATTCACAG GCGATCCTGC 49836 .......... .......... .......... .......... .......... .......... 485 CTTGTTATAG AAGTAATTGA TTGTCTGTCT AAGCTCCTTT TTCCTTAATG CATAAACAGA 49776 .......... .......... .......... .......... .......... .......... 485 ATCTAAAGTA GAAGAACTAA GCATATCACG AACACAAACC TTCCTCAACA TACGCCATTT 49716 .......... .......... .......... .......... .......... .......... 485 GGGTCCATAA GGAGTCCAAG TTATGTCATT GCCACCATAT GTAGCTTCTC TACCAGCAGC 49656 .......... .......... .......... .......... .......... .......... 485 AGGGACATCT CTGTTAGCAA AAATGGTATC TTGATCCTTA AGAACCTCAC GAGCTAATTC 49596 .......... .......... .......... .......... .......... .......... 485 AGGAGAAGTA ATAATAATCC CAATTTTTTT ACCAAGCCAG AGTCTACATA TGGGGCCATA 49536 .......... .......... .......... .......... .......... .......... 485 CGTTTGGGAA AGAGATGCAA AATAGGTATG AAGTTGAGGT TCAAGAGAAT GAAGATTACC 49476 .......... .......... .......... .......... .......... .......... 485 TATCAAGGGC AAAGCTTTAG GGCCTGGTGG CAACCCCTTG TTTGACTTTC TGATGAAAAA 49416 .......... .......... .......... .......... .......... .......... 485 CCATAGTAAA GCTAAAACAC CAAGAAAACA GGATAAAAAC ACACCCTTTT GCTCAACAGT 49356 .......... .......... .......... .......... .......... .......... 485 GAGTTCTTGA AGGGGCCATG GAAAAAAATC ATCAAAAAGG GATTTGATAG ACATTGTTAG 49296 .......... .......... .......... .......... .......... .......... 485 AGGGATATGA AACAAGTGAT GGAAAGCTTG AAGCTTTTGC AGGACTTAAA AAGAGAATTG 49236 .......... .......... .......... .......... .......... .......... 485 ATATTTCGCA AGAAGACAAA AAGAAGTTCC GCATTAAATC TCATCATGGT CCAGTCGGTC 49176 .......... .......... .......... .......... .......... .......... 485 AAAATTAATG GAGGAGTATT TGTTTTACGT ATTTTTTATT GGTTGAAGTC CAAAATCAAA 49116 .......... .......... .......... .......... .......... .......... 485 TCCTTATGGA TCAAAAATTG TTAAATTGAA AATATCTAAC TAATTTGGTT ATTCATTTAG 49056 .......... .......... .......... .......... .......... .......... 485 TGCTAATGGA ATTATTTAAA CTTAGTAGTT TTGATTTAAT TTTTTTTTTT AAATATATAT 48996 .......... .......... .......... .......... .......... .......... 485 ATATATAAAT AATATCTTTC TATTTTTAAA AAAATATATG AAAAAAATAA TTTTAAATCC 48936 .......... .......... .......... .......... .......... .......... 485 AATAAATCAA ATATCTATGT TAAAGAATGA CAAAAGTCTC ACATCGGTGA TTAATGAGAT 48876 ||| |||| ||||| ||||| || | |||||||||| |||||||||| .......... ......GTGT TAAATAATGA CAAAAATCCC ACATCGGTGA TTAATGAGAT 529 GGGTGGACTC TTTATAAGGC TCGGGCAATC CTCCTCCTTT TAAGCTAGCT TTTGGGGTGT 48816 |||||||||| |||||||||| | |||||||| ||||||| || | |||||||| |||||||||| GGGTGGACTC TTTATAAGGC TTGGGCAATC CTCCTCCCTT TGAGCTAGCT TTTGGGGTGT 589 GAATTAGGCC TAAGACCTAA CTTCACAATC TATACTAGAT TTTTGAATCC TATGGGCAGA 48756 || ||||||| |||||||||| |||||| GAGTTAGGCC TAAGACCTAA TTTCACA... .......... .......... .......... 616 GGCCAAACTT ATTGGTAAAC CACATATATT GTTCCTCCTT TATTATTGAT GTTCGAATGT 48696 .......... .......... .......... .......... .......... .......... 616 TGTCTATATA CCATTCCTTG TCCTTACTTT ATTTTACTGT TCGTTTTTTA AATTCAGAGA 48636 .......... .......... .......... .......... .......... .......... 616 GTAAAATAAA AAATTGAGTC TCGAATCATC TTCTAAAAAT TCTTTTATTC TCTATTTATA 48576 .......... .......... .......... .......... .......... .......... 616 GAGAAGAAGT GAAATAAAAT CCAAATTTTG GACAACTACT ATGTGTCTCC TTTATTTCAG 48516 .......... .......... .......... .......... .......... .......... 616 TACGTCATTA ATTTAATATT ATTTTTATTC TATGTAACTA ACATATTATT TTTCATATAA 48456 .......... .......... .......... .......... .......... .......... 616 GGCTATTAAT TAAATTTCTA ATATTGTTAG CTTTAATTAA ATTTATATAA TGTTTTTTTT 48396 .......... .......... .......... .......... .......... .......... 616 AAAAAAAAAT CACCATCATT AAGAGTTGTT TATACTTTTT ATAAAGTTTT TCAATTATTT 48336 .......... .......... .......... .......... .......... .......... 616 TTAATTATCC CCCTCGTATT AAGTTTCTAT GGCACACTAA TACAATAGAA AAATCAATAT 48276 .......... .......... .......... .......... .......... .......... 616 TTGAGATAGA TTGAATGTAA CATTCACATG CATAAATGAA TGAGTATTTT ATGGCAATTC 48216 .......... .......... .......... .......... .......... .......... 616 AATTTTAGGA TAATCTTCTG GAAAGTTAAT ATTGAAAAGT TATAAACGAA AATTAGAACA 48156 .......... .......... .......... .......... .......... .......... 616 AATGAATACT AATTAGTAAT AATTGATACG ATAAAGTAAA TGAATACAAG TGATATTAAA 48096 .......... .......... .......... .......... .......... .......... 616 GCGAATAAAT ATATATACCA TCTTTGTTGC TACTTGCTTG TATACACCAC TGTACTATAT 48036 .......... .......... .......... .......... .......... .......... 616 CACATATCTT GACTTAGTTG CATTTGTTGT GCGAGCAAAT ACAGCTGTAA CATGATTTTA 47976 .......... .......... .......... .......... .......... .......... 616 TTTGTTGTGT AAACGAATAT ATTGATACAT ATTACATTTG TTGGGCAAAC AAATATAATA 47916 .......... .......... .......... .......... .......... .......... 616 GCTATACTCA TTTCACAAAC GAATATATTG AATATAATCG TCTGACCATC AAATTTTGCT 47856 .......... .......... .......... .......... .......... .......... 616 ATGAATGATA ATTACGGTAA CTATTGTTTC ATTTGATAAT TAGCATCCAC ACTGGGCAAA 47796 .......... .......... .......... .......... .......... .......... 616 GGAATGAGAT GTATCGGTAT CGTTTCGGTT CGTTTCGGTT TGATTGCCTA GGGGATATCT 47736 .......... .......... .......... .......... .......... .......... 616 CGAACCGAAA CACGGAACGG AATGAAACCG AGGTTTGATA TCGGTGTACT GGTACCAGTT 47676 .......... .......... .......... .......... .......... .......... 616 TATTCTGGTC TGGTTCCGAT TAATTAATTT ATATTATATA TTTATAAATT ATAATTTAAA 47616 .......... .......... .......... .......... .......... .......... 616 TTTTATATTA TTAATAAATA TTACCTGTTG CCAATCTGTG TTAAGAAAAT CAGAAATTAC 47556 .......... .......... .......... .......... .......... .......... 616 TGGTTGTAAT AAATCATTCA GAAACACGAA 47526 |||| ||| .......... .......... .AAACGTGAA 625 hqPGS_C08HBa0060C12.1-_SGN-E369423- (51290 51260,50703 50696,48919 48789) ******************************************************************************** EST sequence 356 +strand 689 n (File: SGN-E375169+) 1 AAAAATGGCA GAGCAGCTGA CGGAGGAGCA GATCGCTGAG TTCAAGGAAG CTTTTAGCCT 61 TTTCGACAAG GATGGCGATG GCTGTATTAC TACCAAGGAG TTGGGAACAG TGATGAGATC 121 ACTTGGTCAG AATCCCACTG AAGCTGAACT ACAGGATATG ATCAGTGAAG TTGATGCTGA 181 TCAGAATGGA ACCATTGATT TTCCAGAGTT CTTGAATCTG ATGGCACGGA AGATGAAGGT 241 ATAGGAGTAC TAGCTATTTG AATATTATGT TAGTCTTTCT TATTTGTACT TGTTTATCAA 301 CCCAATAACT TGTCGTATTT CAACTTTAAA ATATTGTGGG TGACTTTTGA GTCAACTGAT 361 CTTTGGGTCA AATATTAGTA TGCTATGGTC TGGATAGTTC CTAGATTCTT TCAGATTATT 421 CACGAAAAAC CTTGCTTTAA GTTCTGCATG CATCGAGACA ATCTCTCTTA TAGGAAAAGT 481 TGCTTACAGG CAGATGCCTT TGTAAACATC TGTTAAAGAA TGATAAAAGT CCCACATCGG 541 TAATTAATGA GATGGGTGGA CTCTTTATAA GGCTTGGACA ATCCTCCTCC CTTTGAGCTA 601 GCTTTTGGGG TGTGAGTTAG GCCTAAGACC TAATTTCACA ACATCCAAGT TACAATAATG 661 AGATAATACA ATTTTCAAGG GATCAATGA Predicted gene structure (within gDNA segment 55506 to 47626): Exon 1 54774 54755 ( 20 n); cDNA 426 445 ( 20 n); score: 0.650 Intron 1 54754 51086 (3669 n); Pd: 0.000 (s: 0), Pa: 0.721 (s: 0) Exon 2 51085 51071 ( 15 n); cDNA 446 459 ( 14 n); score: 0.600 Intron 2 51070 49777 (1294 n); Pd: 0.351 (s: 0), Pa: 0.849 (s: 0) Exon 3 49776 49756 ( 21 n); cDNA 460 480 ( 21 n); score: 0.524 Intron 3 49755 49357 ( 399 n); Pd: 0.525 (s: 0), Pa: 0.467 (s: 0) Exon 4 49356 49329 ( 28 n); cDNA 481 508 ( 28 n); score: 0.571 Intron 4 49328 48921 ( 408 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 5 48920 48789 ( 132 n); cDNA 509 640 ( 132 n); score: 0.924 MATCH C08HBa0060C12.1- SGN-E375169+ 0.924 216 0.313 C PGS_C08HBa0060C12.1-_SGN-E375169+ (54774 54755,51085 51071,49776 49756,49356 49329,48920 48789) Alignment (genomic DNA sequence = upper lines): AAAACTTTGA ATCAATTTTC ATAGAGCACA AAAGACAGAA TCATCATGCG GAATACAACA 54715 ||||| ||| | || || AAAACCTTGC TTTAAGTTCT .......... .......... .......... .......... 445 CTCTACAGAC ACATTTTAAT ATTACTCATA GAGTGTTGGA TTGGATAATC TTGGAGTTGG 54655 .......... .......... .......... .......... .......... .......... 445 GATAGCCACC AGAGGCATTT TCTTCTTCAG AACAATCCCA AACATCTCTG TAAGGTCTAA 54595 .......... .......... .......... .......... .......... .......... 445 ATTCTCCCCT TCAGACATTG TCCAGTTGAA AGAATGAATG AGTGATGCCA GTAAAAACAT 54535 .......... .......... .......... .......... .......... .......... 445 GAACATCCTC TCTGCCATGG CTATCCCCGC ACACATTCTT CTGCCAGAAC CAAATGGGAA 54475 .......... .......... .......... .......... .......... .......... 445 ATAGTTCAAA TCATTTCCAC TATAATCACA TTTATTGTCC AAAAATTTTT CTGGATGGAA 54415 .......... .......... .......... .......... .......... .......... 445 CTCAGTTGGA TTTTCACATA TAGAAGGATC TCTGTGAATA GCCCATACGT TTACGAAAAC 54355 .......... .......... .......... .......... .......... .......... 445 ACAAGATCCT TTAGGAACAG TGTATCCTCC AACAATACCT GCCTCACTAG GAAAATGAGG 54295 .......... .......... .......... .......... .......... .......... 445 AACCAAAAGT GGAAGTACTG GATGTAGGCG CAAGACTTCT TTCATAACTG CATAGAAATA 54235 .......... .......... .......... .......... .......... .......... 445 TGGTAACTGT TGAATATGAG ACTCTTCCAC TATGTTATCT TTTCCCACGA CTGTATCTAC 54175 .......... .......... .......... .......... .......... .......... 445 TTCTTGTAAT TTTCTCAGGA TATCTCGTTT GTTCATAATT TCAGCCATGG CAAACTCAAC 54115 .......... .......... .......... .......... .......... .......... 445 CGTGTTGGAG GTCGTAGCAG TTCCACCGAC AACCATATCC TGTTCACAGT ATTTGTGAAG 54055 .......... .......... .......... .......... .......... .......... 445 TTATTATCAT GTACAACATT TTTTAATTTG TAGAACTGTA CATATATATA GGTGTTCAGT 53995 .......... .......... .......... .......... .......... .......... 445 TCAAGGTTCT CAATTAAGTC TGAATTAAGC TTTACATAAT ATTTGATGCT AAATGACTCT 53935 .......... .......... .......... .......... .......... .......... 445 TTTCTTAGTA CAGTCCAATA ACAAGTTAGC AAACAACAGT TCAGACATCT AATGGAAACA 53875 .......... .......... .......... .......... .......... .......... 445 ATCAAAATGC GCACCGATAA AACATACCAT AAGTAAGGCT TTGAGTTCAG TCATAGACAG 53815 .......... .......... .......... .......... .......... .......... 445 AGGCATTTTG GAATCTGCTT CATCTTTCAA CTTCAGCAAA ACTTGCAAAA AGTCCTTGCT 53755 .......... .......... .......... .......... .......... .......... 445 TTCTTGACCA ACACCAGCTC CCATCTCAGT ATTTCCATCC ATTTTCTGTC TTTGATCAAT 53695 .......... .......... .......... .......... .......... .......... 445 CATGCTCTCA AATATCGTAT CAAATCTCTT TGCCAACACT TTCATCTTCT TTGTAACACC 53635 .......... .......... .......... .......... .......... .......... 445 CTGCAAATCG AACCAGTCCA AGCAAATCGG AAACATTTGG AGTACCTAAC AGCTCAGTAT 53575 .......... .......... .......... .......... .......... .......... 445 TCCATACACA ACATGCCTAA ACTCTGCCCC AAGATTAGCT CTTTCCTCAC CCTTCACTGT 53515 .......... .......... .......... .......... .......... .......... 445 GCCACCCCAT AACATGCTTG TAATCACGTT AAACATAGTC AAGAACATCT TTTCACCAAC 53455 .......... .......... .......... .......... .......... .......... 445 ATTCACAGGC AATCCGGCCT GACTATAGAA GTAATTGATT CTGTCTAAGC TCCTTTTTCC 53395 .......... .......... .......... .......... .......... .......... 445 TTAGTGCATA AACAGAATCT AAAGCAGAAC CACCAAGCAT ATCACGAACA CAAACAGTTC 53335 .......... .......... .......... .......... .......... .......... 445 TCAACATACG CCATTTCGGT CCAAAAGGAT TCCAAACCGC CATATGACAT TTCTCTTCCA 53275 .......... .......... .......... .......... .......... .......... 445 GCAGCAGGCA CATCTCTGTA AGCAAATATG GTATCTTGTT CCTTAAGAAC TTCGCGAGCT 53215 .......... .......... .......... .......... .......... .......... 445 AAGGCAGGCG AAGTAATAAT AATGCCAAGT TTTATACCAA GCCAGAGTCT ACAAATGGGG 53155 .......... .......... .......... .......... .......... .......... 445 CCATAAGTTT GGGAAAGAGA AGCAAAATAG GTGCGAAGTT GAGGTTCAAC AGAATGGAGA 53095 .......... .......... .......... .......... .......... .......... 445 TTACCTAGTA AAGGTAAAGC TTTAGGCCCC GGTGGCAACG GGGGTTGTCC CTTTTTTGAC 53035 .......... .......... .......... .......... .......... .......... 445 TTGTTAGTGA AAAGCCAAAG AAACCATCGT AAACCTATAA TACCAAGAAC ATAGGATAAA 52975 .......... .......... .......... .......... .......... .......... 445 AATGCACCTT TTTTGCTCAA TATTTGATTC TTGCCAGGGA AATGAGAAAG AATCAAACAG 52915 .......... .......... .......... .......... .......... .......... 445 AGGTTTGGAG AATTTGAGAG ACATTGTTTG AGCCTAAGAA GGAAATGGAA ATTGGCAGAA 52855 .......... .......... .......... .......... .......... .......... 445 CCAATGTAGT GGGAAGCTCA AGGCTTTTTT GATTCAAGAA AGTTTTCTTC CTTTGTCAAA 52795 .......... .......... .......... .......... .......... .......... 445 GATTTGGCAG CCATATATAT TTAAATTTGG CAGCCATGAA TGTTGAGATT TTGCACCCAT 52735 .......... .......... .......... .......... .......... .......... 445 AAAAGTTGAG ATTTGGCAGC TATAATATAA TTGATATATT TGGCAGTTAA TAACCCAGAT 52675 .......... .......... .......... .......... .......... .......... 445 GGCCACTCAA CTAATACTTC TTCTCATTCA ACTTACCGTT TTAGTTTTTA CCTCAAAGTC 52615 .......... .......... .......... .......... .......... .......... 445 TTAGATTTTT TTCACAGAAT TTCTAAAATC AAGTCACTCA ACTATTGAGT TTTCATTTAG 52555 .......... .......... .......... .......... .......... .......... 445 AAAGTCACCT AATTAATTTA AATAATTTTT TCATTAAATT TTGTTGAAAT GCAAATTTTG 52495 .......... .......... .......... .......... .......... .......... 445 AGTTAAACTA ATGAAAAATA ATTGTTGAAA TGCCCCAAAC ATCATTATGA ATGACATCAA 52435 .......... .......... .......... .......... .......... .......... 445 AAACACTTGC AAAACAACTA TCAAAATTAG GAAAAGGCTG AGTTTTATTT TTGCAAAACT 52375 .......... .......... .......... .......... .......... .......... 445 TGCATGTGTA AGACAATCAA AGGTAGTTAC TTAAAATTGA TTTTTATTTC TCAAACAACC 52315 .......... .......... .......... .......... .......... .......... 445 GAAAATTCCA TAAATGGAAC AAAACATTAG AACTTGGATG CCCTAGATGC TTATGCCAAA 52255 .......... .......... .......... .......... .......... .......... 445 CTTAGTCTTA CTAGCTAGTT GTAGAAGTAC AAACAAAAAT AAAACACGAG GAATGAAAGA 52195 .......... .......... .......... .......... .......... .......... 445 GTGTATGGGA AACAATCTTC CAACTTAAGG TCACTTCGCA ATTATCATCT CCGACATGTG 52135 .......... .......... .......... .......... .......... .......... 445 ATTCTTTCAT ATCTTTCTTC ACTTCGAATG TAGCCTAGTT GGAATCATGA TTTTGCCATA 52075 .......... .......... .......... .......... .......... .......... 445 ACACCTTAAC GAAGGCTATA TCCACAGAGT CACCTATCAA TTCTGAATTG TCTTAAGCCT 52015 .......... .......... .......... .......... .......... .......... 445 TTCTTGAATA TTATTACCTT TTTCTCGGGC TTCATGAACA AAATTGGGCC AATCAGCTGT 51955 .......... .......... .......... .......... .......... .......... 445 ACTCTACTCG GTTTGAACCA ACCTATGGGC GATCTACATT GTTGTCTGTA CAAAGGTCGC 51895 .......... .......... .......... .......... .......... .......... 445 ACACAACCAT TTAGATGCTC GTCGGATAGC TGTTGTTCTT ATTGAACTTT ATCAACAGAA 51835 .......... .......... .......... .......... .......... .......... 445 GGTGATCATC CCATTTACCT CATAAATCCA TTAGATAAGA TCGTAACATA TCATCAAGCA 51775 .......... .......... .......... .......... .......... .......... 445 TTTGAATGGT CCTTCTGCTT GCACGTCTAT CAGCTGGTGG AAAAATCATG CTAAGATTAA 51715 .......... .......... .......... .......... .......... .......... 445 CAAGTGTGCC CAAGCCTTTC TGGAACGACT GCTAGAAGTG AGTGGCGTAC TGTACACCTC 51655 .......... .......... .......... .......... .......... .......... 445 AGAAATGATC ACCTCCGGAT GCCATCTGGA ACACAGAAAC GACCATTGTG AACGAGGAAA 51595 .......... .......... .......... .......... .......... .......... 445 CTGTCAGCAG AAGAATAACT TGATTAGGTA TTATAACTTG TGTTGAGAAG ATTTCGGGAA 51535 .......... .......... .......... .......... .......... .......... 445 GAAATAGAAT CAAATACTGG GGATACAATC ATTCAGGCAG ACTGAGTTGC AGCTTTCATA 51475 .......... .......... .......... .......... .......... .......... 445 TTCTTGATGT GTATCAACTT TATAGAAACC ATTGAATTAG TTAGAAATGG ATCCAAGGAT 51415 .......... .......... .......... .......... .......... .......... 445 CCAAATTACA GGGAACGCGT CTCCATATAT AATTCATCGT ACAAAAGAGA GAAGTATAAT 51355 .......... .......... .......... .......... .......... .......... 445 CACTACAAAC ACATTTCAAT AGTTATATAA AAAACACTAG CAAAAGGTAG GAAACAGGAG 51295 .......... .......... .......... .......... .......... .......... 445 ATAGCAAACC TCAATGAGAA TAATTACAAC CATATGTGCT CATTAAAACC ATACTTTTAT 51235 .......... .......... .......... .......... .......... .......... 445 GGATACCTTA CACCACAAAT TAAAATATAC AGATTTATCA ATAAGCATAT AATAATTACT 51175 .......... .......... .......... .......... .......... .......... 445 GCAGTACTGA TATATGTTAT TGTCCATTTG GATAGAGCAA CATGTTTTAT TTTACTCATA 51115 .......... .......... .......... .......... .......... .......... 445 GAGTGTTGGA TTGGATAATC TTGGAGTAGG TATAGCCACC AGAGGCATCT TCTTCTTCAG 51055 | || || | ||| .......... .......... .........G CAT-GCATCG AGAC...... .......... 459 AACAATCCCA AACTTCTCTG TGAGGTCTAA TGTCTCTCCT TCAGGCAATT TCCAGTCGAA 50995 .......... .......... .......... .......... .......... .......... 459 AGAATGCACG AGTGAAGCCA GTGAATACAT GAACATCCTC TCTGCCATGC CTATCCCCGC 50935 .......... .......... .......... .......... .......... .......... 459 ACAGATTCTT CTGCCAGAAC CAAATGGGAA ATAGTTGAAA TCATTTCCAC TATAATCCCA 50875 .......... .......... .......... .......... .......... .......... 459 CTTATTGTCC AAAAATCTCT CTGGACGGAA CTCAGTTGGA TTTTCCCATA TAGAAGGATC 50815 .......... .......... .......... .......... .......... .......... 459 TCGCTGTATA GCCCATACAT TTATAAATAC ACGAGATCCT TCAGGAATAG TGTATCCTCC 50755 .......... .......... .......... .......... .......... .......... 459 AACAGTGACT GTCTCACTAG GACAATGTGG CACCAAGAGT GGAAGAGCTG GATGTAAACG 50695 .......... .......... .......... .......... .......... .......... 459 CAAGGCTTCT TTCATAACTG CATAGAAATA TGGCAACTGT TGAATATGAG ACTCTTCCAC 50635 .......... .......... .......... .......... .......... .......... 459 TATGTTATCT TTTCCCACGA CTGTATCTAG TTCTTGTTGT AATTTCCTCA AGATATCTCG 50575 .......... .......... .......... .......... .......... .......... 459 TTTGTTCATA ATCTCAGCCA TGGCAAACTC AACTACGTTG GCGGTAGTGT CAGTTCCACC 50515 .......... .......... .......... .......... .......... .......... 459 AACAACCATA TCCTGTTCAT GGTATTCGTA AAGTTATTAT CATGTACAAC AATTTTTTAT 50455 .......... .......... .......... .......... .......... .......... 459 TTGTACAACT GTATATAGGT GTTCAGCTTA AGGTTCTCAC TTTAGTCTTC ACATATTTTT 50395 .......... .......... .......... .......... .......... .......... 459 GATATGATTA AAGCCTATAT ATTGTTTGAT GCTAAATGAC TCTTTCCTTA GTGCAGTCCA 50335 .......... .......... .......... .......... .......... .......... 459 ATAAATAGTT AGCAACCAAC AGTTCAGTCA TCTAATGGAA ACAATCAAAA TCGCATATAC 50275 .......... .......... .......... .......... .......... .......... 459 TGGAAGTAAC AGATCATACC ATGAGTAAGG CTTTGAGTTC AATCATAGTC AGAGGCATTT 50215 .......... .......... .......... .......... .......... .......... 459 TGGAATCTGC TTCATCTTTC AACTTGAGCA AAACTTGCAA AAAATCCTTG CTTTCTTGAC 50155 .......... .......... .......... .......... .......... .......... 459 CAACACCAGC TCCCATCTCA GAATTTCTAT CCATTTTCTG TCTTTGATCA ATCATGCTCT 50095 .......... .......... .......... .......... .......... .......... 459 CAAATATCGC ATCAAATCTC TTTGCCAACA CTTTCATCTT CTTTGTAACA CCCTGCAAAT 50035 .......... .......... .......... .......... .......... .......... 459 CGAACCACTC CAAGCCCGGA TAAAAATCAG AAACATTTGG AGTACCTAAC AGCTCAGTCA 49975 .......... .......... .......... .......... .......... .......... 459 TTTCATTCAC AACATGCCTA AACTCTGCCC CAAGATTAGC TCTTTCCTCA CCCTTCACTG 49915 .......... .......... .......... .......... .......... .......... 459 TAGCACCCCA TAACATGCTT GTAATCACAT TAAGAATAGT CAAGAACATC TGTTCACCAA 49855 .......... .......... .......... .......... .......... .......... 459 CATTCACAGG CGATCCTGCC TTGTTATAGA AGTAATTGAT TGTCTGTCTA AGCTCCTTTT 49795 .......... .......... .......... .......... .......... .......... 459 TCCTTAATGC ATAAACAGAA TCTAAAGTAG AAGAACTAAG CATATCACGA ACACAAACCT 49735 || ||| || | ||| .......... ........AA TCTCTCTTAT AGGAAAAGT. .......... .......... 480 TCCTCAACAT ACGCCATTTG GGTCCATAAG GAGTCCAAGT TATGTCATTG CCACCATATG 49675 .......... .......... .......... .......... .......... .......... 480 TAGCTTCTCT ACCAGCAGCA GGGACATCTC TGTTAGCAAA AATGGTATCT TGATCCTTAA 49615 .......... .......... .......... .......... .......... .......... 480 GAACCTCACG AGCTAATTCA GGAGAAGTAA TAATAATCCC AATTTTTTTA CCAAGCCAGA 49555 .......... .......... .......... .......... .......... .......... 480 GTCTACATAT GGGGCCATAC GTTTGGGAAA GAGATGCAAA ATAGGTATGA AGTTGAGGTT 49495 .......... .......... .......... .......... .......... .......... 480 CAAGAGAATG AAGATTACCT ATCAAGGGCA AAGCTTTAGG GCCTGGTGGC AACCCCTTGT 49435 .......... .......... .......... .......... .......... .......... 480 TTGACTTTCT GATGAAAAAC CATAGTAAAG CTAAAACACC AAGAAAACAG GATAAAAACA 49375 .......... .......... .......... .......... .......... .......... 480 CACCCTTTTG CTCAACAGTG AGTTCTTGAA GGGGCCATGG AAAAAAATCA TCAAAAAGGG 49315 || | | | | | ||| | | ||| | .......... ........TG CTTACAGGCA GATGCCTTTG TAAACA.... .......... 508 ATTTGATAGA CATTGTTAGA GGGATATGAA ACAAGTGATG GAAAGCTTGA AGCTTTTGCA 49255 .......... .......... .......... .......... .......... .......... 508 GGACTTAAAA AGAGAATTGA TATTTCGCAA GAAGACAAAA AGAAGTTCCG CATTAAATCT 49195 .......... .......... .......... .......... .......... .......... 508 CATCATGGTC CAGTCGGTCA AAATTAATGG AGGAGTATTT GTTTTACGTA TTTTTTATTG 49135 .......... .......... .......... .......... .......... .......... 508 GTTGAAGTCC AAAATCAAAT CCTTATGGAT CAAAAATTGT TAAATTGAAA ATATCTAACT 49075 .......... .......... .......... .......... .......... .......... 508 AATTTGGTTA TTCATTTAGT GCTAATGGAA TTATTTAAAC TTAGTAGTTT TGATTTAATT 49015 .......... .......... .......... .......... .......... .......... 508 TTTTTTTTTA AATATATATA TATATAAATA ATATCTTTCT ATTTTTAAAA AAATATATGA 48955 .......... .......... .......... .......... .......... .......... 508 AAAAAATAAT TTTAAATCCA ATAAATCAAA TATCTATGTT AAAGAATGAC AAAAGTCTCA 48895 | |||| ||||||||| ||||||| || .......... .......... .......... ....TCTGTT AAAGAATGAT AAAAGTCCCA 534 CATCGGTGAT TAATGAGATG GGTGGACTCT TTATAAGGCT CGGGCAATCC TCCTCCTTTT 48835 ||||||| || |||||||||| |||||||||| |||||||||| || |||||| |||||| ||| CATCGGTAAT TAATGAGATG GGTGGACTCT TTATAAGGCT TGGACAATCC TCCTCCCTTT 594 AAGCTAGCTT TTGGGGTGTG AATTAGGCCT AAGACCTAAC TTCACA 48789 ||||||||| |||||||||| | |||||||| ||||||||| |||||| GAGCTAGCTT TTGGGGTGTG AGTTAGGCCT AAGACCTAAT TTCACA 640 hqPGS_C08HBa0060C12.1-_SGN-E375169+ (48920 48789) ******************************************************************************** EST sequence 189 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 48828 to 54905): Exon 1 49806 50130 ( 325 n); cDNA 1 325 ( 325 n); score: 0.837 Intron 1 50131 53737 (3607 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.92) Exon 2 53738 53847 ( 110 n); cDNA 326 435 ( 110 n); score: 0.927 Intron 2 53848 54075 ( 228 n); Pd: 0.989 (s: 0.92), Pa: 0.999 (s: 0.88) Exon 3 54076 54178 ( 103 n); cDNA 436 538 ( 103 n); score: 0.893 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.866 538 1.000 C PGS_C08HBa0060C12.1+_SGN-E206806+ (49806 50130,53738 53847,54076 54178) Alignment (genomic DNA sequence = upper lines): AGACAGACAA TCAATTACTT CTATAACAAG GCAGGATCGC CTGTGAATGT TGGTGAACAG 49865 |||| ||| |||||||||| |||| || || | | | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTATTCTTAA TGTGATTACA AGCATGTTAT GGGGTGCTAC AGTGAAGGGT 49925 |||||||||| || | ||||| |||||| ||| |||||||||| |||| | || |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAATCTTGG GGCAGAGTTT AGGCATGTTG TGAATGAAAT GACTGAGCTG 49985 |||||||||| ||| |||||| || |||||| |||||||||| ||| ||| || ||||| || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TTAGGTACTC CAAATGTTTC TGATTTTTAT CCGGGCTTGG AGTGGTTCGA TTTGCAGGGT 50045 | ||| || | ||| |||| ||||||||| |||||||||| ||||| || ||| |||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTACAAAGA AGATGAAAGT GTTGGCAAAG AGATTTGATG CGATATTTGA GAGCATGATT 50105 |||| ||||| |||| || || |||| |||| ||||||||| ||||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AGAAAATGGA TAGAAATTCT GAGATGGGAG CTGGTGTTGG TCAAGAAAGC 50165 |||||||||| | ||| | || |||| GATCAAAGAC AAAAATTAGA CAGAA..... .......... .......... .......... 325 AAGGATTTTT TGCAAGTTTT GCTCAAGTTG AAAGATGAAG CAGATTCCAA AATGCCTCTG 50225 .......... .......... .......... .......... .......... .......... 325 ACTATGATTG AACTCAAAGC CTTACTCATG GTATGATCTG TTACTTCCAG TATATGCGAT 50285 .......... .......... .......... .......... .......... .......... 325 TTTGATTGTT TCCATTAGAT GACTGAACTG TTGGTTGCTA ACTATTTATT GGACTGCACT 50345 .......... .......... .......... .......... .......... .......... 325 AAGGAAAGAG TCATTTAGCA TCAAACAATA TATAGGCTTT AATCATATCA AAAATATGTG 50405 .......... .......... .......... .......... .......... .......... 325 AAGACTAAAG TGAGAACCTT AAGCTGAACA CCTATATACA GTTGTACAAA TAAAAAATTG 50465 .......... .......... .......... .......... .......... .......... 325 TTGTACATGA TAATAACTTT ACGAATACCA TGAACAGGAT ATGGTTGTTG GTGGAACTGA 50525 .......... .......... .......... .......... .......... .......... 325 CACTACCGCC AACGTAGTTG AGTTTGCCAT GGCTGAGATT ATGAACAAAC GAGATATCTT 50585 .......... .......... .......... .......... .......... .......... 325 GAGGAAATTA CAACAAGAAC TAGATACAGT CGTGGGAAAA GATAACATAG TGGAAGAGTC 50645 .......... .......... .......... .......... .......... .......... 325 TCATATTCAA CAGTTGCCAT ATTTCTATGC AGTTATGAAA GAAGCCTTGC GTTTACATCC 50705 .......... .......... .......... .......... .......... .......... 325 AGCTCTTCCA CTCTTGGTGC CACATTGTCC TAGTGAGACA GTCACTGTTG GAGGATACAC 50765 .......... .......... .......... .......... .......... .......... 325 TATTCCTGAA GGATCTCGTG TATTTATAAA TGTATGGGCT ATACAGCGAG ATCCTTCTAT 50825 .......... .......... .......... .......... .......... .......... 325 ATGGGAAAAT CCAACTGAGT TCCGTCCAGA GAGATTTTTG GACAATAAGT GGGATTATAG 50885 .......... .......... .......... .......... .......... .......... 325 TGGAAATGAT TTCAACTATT TCCCATTTGG TTCTGGCAGA AGAATCTGTG CGGGGATAGG 50945 .......... .......... .......... .......... .......... .......... 325 CATGGCAGAG AGGATGTTCA TGTATTCACT GGCTTCACTC GTGCATTCTT TCGACTGGAA 51005 .......... .......... .......... .......... .......... .......... 325 ATTGCCTGAA GGAGAGACAT TAGACCTCAC AGAGAAGTTT GGGATTGTTC TGAAGAAGAA 51065 .......... .......... .......... .......... .......... .......... 325 GATGCCTCTG GTGGCTATAC CTACTCCAAG ATTATCCAAT CCAACACTCT ATGAGTAAAA 51125 .......... .......... .......... .......... .......... .......... 325 TAAAACATGT TGCTCTATCC AAATGGACAA TAACATATAT CAGTACTGCA GTAATTATTA 51185 .......... .......... .......... .......... .......... .......... 325 TATGCTTATT GATAAATCTG TATATTTTAA TTTGTGGTGT AAGGTATCCA TAAAAGTATG 51245 .......... .......... .......... .......... .......... .......... 325 GTTTTAATGA GCACATATGG TTGTAATTAT TCTCATTGAG GTTTGCTATC TCCTGTTTCC 51305 .......... .......... .......... .......... .......... .......... 325 TACCTTTTGC TAGTGTTTTT TATATAACTA TTGAAATGTG TTTGTAGTGA TTATACTTCT 51365 .......... .......... .......... .......... .......... .......... 325 CTCTTTTGTA CGATGAATTA TATATGGAGA CGCGTTCCCT GTAATTTGGA TCCTTGGATC 51425 .......... .......... .......... .......... .......... .......... 325 CATTTCTAAC TAATTCAATG GTTTCTATAA AGTTGATACA CATCAAGAAT ATGAAAGCTG 51485 .......... .......... .......... .......... .......... .......... 325 CAACTCAGTC TGCCTGAATG ATTGTATCCC CAGTATTTGA TTCTATTTCT TCCCGAAATC 51545 .......... .......... .......... .......... .......... .......... 325 TTCTCAACAC AAGTTATAAT ACCTAATCAA GTTATTCTTC TGCTGACAGT TTCCTCGTTC 51605 .......... .......... .......... .......... .......... .......... 325 ACAATGGTCG TTTCTGTGTT CCAGATGGCA TCCGGAGGTG ATCATTTCTG AGGTGTACAG 51665 .......... .......... .......... .......... .......... .......... 325 TACGCCACTC ACTTCTAGCA GTCGTTCCAG AAAGGCTTGG GCACACTTGT TAATCTTAGC 51725 .......... .......... .......... .......... .......... .......... 325 ATGATTTTTC CACCAGCTGA TAGACGTGCA AGCAGAAGGA CCATTCAAAT GCTTGATGAT 51785 .......... .......... .......... .......... .......... .......... 325 ATGTTACGAT CTTATCTAAT GGATTTATGA GGTAAATGGG ATGATCACCT TCTGTTGATA 51845 .......... .......... .......... .......... .......... .......... 325 AAGTTCAATA AGAACAACAG CTATCCGACG AGCATCTAAA TGGTTGTGTG CGACCTTTGT 51905 .......... .......... .......... .......... .......... .......... 325 ACAGACAACA ATGTAGATCG CCCATAGGTT GGTTCAAACC GAGTAGAGTA CAGCTGATTG 51965 .......... .......... .......... .......... .......... .......... 325 GCCCAATTTT GTTCATGAAG CCCGAGAAAA AGGTAATAAT ATTCAAGAAA GGCTTAAGAC 52025 .......... .......... .......... .......... .......... .......... 325 AATTCAGAAT TGATAGGTGA CTCTGTGGAT ATAGCCTTCG TTAAGGTGTT ATGGCAAAAT 52085 .......... .......... .......... .......... .......... .......... 325 CATGATTCCA ACTAGGCTAC ATTCGAAGTG AAGAAAGATA TGAAAGAATC ACATGTCGGA 52145 .......... .......... .......... .......... .......... .......... 325 GATGATAATT GCGAAGTGAC CTTAAGTTGG AAGATTGTTT CCCATACACT CTTTCATTCC 52205 .......... .......... .......... .......... .......... .......... 325 TCGTGTTTTA TTTTTGTTTG TACTTCTACA ACTAGCTAGT AAGACTAAGT TTGGCATAAG 52265 .......... .......... .......... .......... .......... .......... 325 CATCTAGGGC ATCCAAGTTC TAATGTTTTG TTCCATTTAT GGAATTTTCG GTTGTTTGAG 52325 .......... .......... .......... .......... .......... .......... 325 AAATAAAAAT CAATTTTAAG TAACTACCTT TGATTGTCTT ACACATGCAA GTTTTGCAAA 52385 .......... .......... .......... .......... .......... .......... 325 AATAAAACTC AGCCTTTTCC TAATTTTGAT AGTTGTTTTG CAAGTGTTTT TGATGTCATT 52445 .......... .......... .......... .......... .......... .......... 325 CATAATGATG TTTGGGGCAT TTCAACAATT ATTTTTCATT AGTTTAACTC AAAATTTGCA 52505 .......... .......... .......... .......... .......... .......... 325 TTTCAACAAA ATTTAATGAA AAAATTATTT AAATTAATTA GGTGACTTTC TAAATGAAAA 52565 .......... .......... .......... .......... .......... .......... 325 CTCAATAGTT GAGTGACTTG ATTTTAGAAA TTCTGTGAAA AAAATCTAAG ACTTTGAGGT 52625 .......... .......... .......... .......... .......... .......... 325 AAAAACTAAA ACGGTAAGTT GAATGAGAAG AAGTATTAGT TGAGTGGCCA TCTGGGTTAT 52685 .......... .......... .......... .......... .......... .......... 325 TAACTGCCAA ATATATCAAT TATATTATAG CTGCCAAATC TCAACTTTTA TGGGTGCAAA 52745 .......... .......... .......... .......... .......... .......... 325 ATCTCAACAT TCATGGCTGC CAAATTTAAA TATATATGGC TGCCAAATCT TTGACAAAGG 52805 .......... .......... .......... .......... .......... .......... 325 AAGAAAACTT TCTTGAATCA AAAAAGCCTT GAGCTTCCCA CTACATTGGT TCTGCCAATT 52865 .......... .......... .......... .......... .......... .......... 325 TCCATTTCCT TCTTAGGCTC AAACAATGTC TCTCAAATTC TCCAAACCTC TGTTTGATTC 52925 .......... .......... .......... .......... .......... .......... 325 TTTCTCATTT CCCTGGCAAG AATCAAATAT TGAGCAAAAA AGGTGCATTT TTATCCTATG 52985 .......... .......... .......... .......... .......... .......... 325 TTCTTGGTAT TATAGGTTTA CGATGGTTTC TTTGGCTTTT CACTAACAAG TCAAAAAAGG 53045 .......... .......... .......... .......... .......... .......... 325 GACAACCCCC GTTGCCACCG GGGCCTAAAG CTTTACCTTT ACTAGGTAAT CTCCATTCTG 53105 .......... .......... .......... .......... .......... .......... 325 TTGAACCTCA ACTTCGCACC TATTTTGCTT CTCTTTCCCA AACTTATGGC CCCATTTGTA 53165 .......... .......... .......... .......... .......... .......... 325 GACTCTGGCT TGGTATAAAA CTTGGCATTA TTATTACTTC GCCTGCCTTA GCTCGCGAAG 53225 .......... .......... .......... .......... .......... .......... 325 TTCTTAAGGA ACAAGATACC ATATTTGCTT ACAGAGATGT GCCTGCTGCT GGAAGAGAAA 53285 .......... .......... .......... .......... .......... .......... 325 TGTCATATGG CGGTTTGGAA TCCTTTTGGA CCGAAATGGC GTATGTTGAG AACTGTTTGT 53345 .......... .......... .......... .......... .......... .......... 325 GTTCGTGATA TGCTTGGTGG TTCTGCTTTA GATTCTGTTT ATGCACTAAG GAAAAAGGAG 53405 .......... .......... .......... .......... .......... .......... 325 CTTAGACAGA ATCAATTACT TCTATAGTCA GGCCGGATTG CCTGTGAATG TTGGTGAAAA 53465 .......... .......... .......... .......... .......... .......... 325 GATGTTCTTG ACTATGTTTA ACGTGATTAC AAGCATGTTA TGGGGTGGCA CAGTGAAGGG 53525 .......... .......... .......... .......... .......... .......... 325 TGAGGAAAGA GCTAATCTTG GGGCAGAGTT TAGGCATGTT GTGTATGGAA TACTGAGCTG 53585 .......... .......... .......... .......... .......... .......... 325 TTAGGTACTC CAAATGTTTC CGATTTGCTT GGACTGGTTC GATTTGCAGG GTGTTACAAA 53645 .......... .......... .......... .......... .......... .......... 325 GAAGATGAAA GTGTTGGCAA AGAGATTTGA TACGATATTT GAGAGCATGA TTGATCAAAG 53705 .......... .......... .......... .......... .......... .......... 325 ACAGAAAATG GATGGAAATA CTGAGATGGG AGCTGGTGTT GGTCAAGAAA GCAAGGACTT 53765 ||||||| || ||||||| |||| ||||| .......... .......... .......... ..ATGGTGTT GGCCAAGAAA GCAAAGACTT 353 TTTGCAAGTT TTGCTGAAGT TGAAAGATGA AGCAGATTCC AAAATGCCTC TGTCTATGAC 53825 |||||||||| ||||| |||| |||||||||| ||||||| || |||||||||| || | ||||| TTTGCAAGTT TTGCTCAAGT TGAAAGATGA AGCAGATGCC AAAATGCCTC TGACCATGAC 413 TGAACTCAAA GCCTTACTTA TGGTATGTTT TATCGGTGCG CATTTTGATT GTTTCCATTA 53885 |||| ||||| |||||||||| || TGAAATCAAA GCCTTACTTA TG........ .......... .......... .......... 435 GATGTCTGAA CTGTTGTTTG CTAACTTGTT ATTGGACTGT ACTAAGAAAA GAGTCATTTA 53945 .......... .......... .......... .......... .......... .......... 435 GCATCAAATA TTATGTAAAG CTTAATTCAG ACTTAATTGA GAACCTTGAA CTGAACACCT 54005 .......... .......... .......... .......... .......... .......... 435 ATATATATGT ACAGTTCTAC AAATTAAAAA ATGTTGTACA TGATAATAAC TTCACAAATA 54065 .......... .......... .......... .......... .......... .......... 435 CTGTGAACAG GATATGGTTG TCGGTGGAAC TGCTACGACC TCCAACACGG TTGAGTTTGC 54125 ||| |||||| |||||||||| || || || |||||| ||| |||||||||| .......... GATTTGGTTG TCGGTGGAAC TGACACAACT TCCAACGCGG TTGAGTTTGC 485 CATGGCTGAA ATTATGAACA AACGAGATAT CCTGAGAAAA TTACAAGAAG TAG 54178 |||||||||| ||| |||||| ||| |||||| |||||||||| ||||| ||| || CATGGCTGAA ATTTTGAACA AACCAGATAT CCTGAGAAAA ATACAACAAG AAG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (49806 50130,53738 53847,54076 54178) ******************************************************************************** EST sequence 44 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 48828 to 56067): Exon 1 49806 50255 ( 450 n); cDNA 1 435 ( 435 n); score: 0.838 Intron 1 50256 50502 ( 247 n); Pd: 0.994 (s: 0.90), Pa: 0.999 (s: 0.86) Exon 2 50503 50789 ( 287 n); cDNA 436 722 ( 287 n); score: 0.889 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.858 737 1.021 C PGS_C08HBa0060C12.1+_SGN-E378935+ (49806 50255,50503 50789) Alignment (genomic DNA sequence = upper lines): AGACAGACAA TCAATTACTT CTATAACAAG GCAGGATCGC CTGTGAATGT TGGTGAACAG 49865 |||| ||| |||||||||| |||| || || | | | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTATTCTTAA TGTGATTACA AGCATGTTAT GGGGTGCTAC AGTGAAGGGT 49925 |||||||||| || | ||||| |||||| ||| |||||||||| |||| | || |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAATCTTGG GGCAGAGTTT AGGCATGTTG TGAATGAAAT GACTGAGCTG 49985 |||||||||| ||| |||||| || |||||| |||||||||| ||| ||| || ||||| || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TTAGGTACTC CAAATGTTTC TGATTTTTAT CCGGGCTTGG AGTGGTTCGA TTTGCAGGGT 50045 | ||| || | ||| |||| ||||||||| |||||||||| ||||| || ||| |||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTACAAAGA AGATGAAAGT GTTGGCAAAG AGATTTGATG CGATATTTGA GAGCATGATT 50105 |||| ||||| |||| || || |||| |||| ||||||||| ||||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AGAAAATGGA TAGAAATTCT GAGATGGGAG CTGGTGTTGG TCAAGAAAGC 50165 |||||||||| | ||||| ||| | | ||| | ||||||||| ||||||||| GATCAAAGAC A-AAAAT--- TAG--A--C- -AGA----A- ATGGTGTTGG CCAAGAAAGC 345 AAGGATTTTT TGCAAGTTTT GCTCAAGTTG AAAGATGAAG CAGATTCCAA AATGCCTCTG 50225 || || |||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AAAGACTTTT TGCAAGTTTT GCTCAAGTTG AAAGATGAAG CAGATGCCAA AATGCCTCTG 405 ACTATGATTG AACTCAAAGC CTTACTCATG GTATGATCTG TTACTTCCAG TATATGCGAT 50285 || |||| || || ||||||| |||||| ||| ACCATGACTG AAATCAAAGC CTTACTTATG .......... .......... .......... 435 TTTGATTGTT TCCATTAGAT GACTGAACTG TTGGTTGCTA ACTATTTATT GGACTGCACT 50345 .......... .......... .......... .......... .......... .......... 435 AAGGAAAGAG TCATTTAGCA TCAAACAATA TATAGGCTTT AATCATATCA AAAATATGTG 50405 .......... .......... .......... .......... .......... .......... 435 AAGACTAAAG TGAGAACCTT AAGCTGAACA CCTATATACA GTTGTACAAA TAAAAAATTG 50465 .......... .......... .......... .......... .......... .......... 435 TTGTACATGA TAATAACTTT ACGAATACCA TGAACAGGAT ATGGTTGTTG GTGGAACTGA 50525 ||| ||||||| | |||||||||| .......... .......... .......... .......GAT TTGGTTGTCG GTGGAACTGA 458 CACTACCGCC AACGTAGTTG AGTTTGCCAT GGCTGAGATT ATGAACAAAC GAGATATCTT 50585 ||| || || |||| |||| |||||||||| |||||| ||| ||||||||| ||||||| | CACAACTTCC AACGCGGTTG AGTTTGCCAT GGCTGAAATT TTGAACAAAC CAGATATCCT 518 GAGGAAATTA CAACAAGAAC TAGATACAGT CGTGGGAAAA GATAACATAG TGGAAGAGTC 50645 ||| ||| || ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAGAAAAATA CAACAAGAAG TAGATACAGT TGTGGGAAAA GATAACATAG TGGAAGAGTC 578 TCATATTCAA CAGTTGCCAT ATTTCTATGC AGTTATGAAA GAAGCCTTGC GTTTACATCC 50705 |||||||||| ||||| |||| || ||||||| ||| |||||| |||||| ||| | ||||||| TCATATTCAA CAGTTACCAT ATCTCTATGC AGTGATGAAA GAAGCCATGC GCATACATCC 638 AGCTCTTCCA CTCTTGGTGC CACATTGTCC TAGTGAGACA GTCACTGTTG GAGGATACAC 50765 ||| || ||| ||||||| | | |||||||| |||||||||| ||||||||| | |||||||| AGCCCTCCCA CTCTTGGCTC CTCATTGTCC TAGTGAGACA ATCACTGTTG GTGGATACAC 698 TATTCCTGAA GGATCTCGTG TATT 50789 | ||||| || || ||||||| | || TGTTCCTAAA GGGTCTCGTG TTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (49806 50255,50503 50789) ******************************************************************************** EST sequence 159 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 49237 to 51306): Exon 1 49837 50255 ( 419 n); cDNA 1 404 ( 404 n); score: 0.878 Intron 1 50256 50502 ( 247 n); Pd: 0.994 (s: 0.90), Pa: 0.999 (s: 0.90) Exon 2 50503 50570 ( 68 n); cDNA 405 472 ( 68 n); score: 0.897 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.881 487 1.032 C PGS_C08HBa0060C12.1+_SGN-E205363+ (49837 50255,50503 50570) Alignment (genomic DNA sequence = upper lines): CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTCTTGAC TATTCTTAAT GTGATTACAA 49896 |||||||||| |||||||||| |||||||||| |||| ||||| | |||||| |||||||||| CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 60 GCATGTTATG GGGTGCTACA GTGAAGGGTG AGGAAAGAGC TAATCTTGGG GCAGAGTTTA 49956 |||||||||| ||||| ||| |||||||||| |||||||||| || ||||||| |||||| ||| GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 120 GGCATGTTGT GAATGAAATG ACTGAGCTGT TAGGTACTCC AAATGTTTCT GATTTTTATC 50016 || ||||||| || | | ||| | |||||||| ||| |||||| |||| |||| |||||||| | GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 180 CGGGCTTGGA GTGGTTCGAT TTGCAGGGTG TTACAAAGAA GATGAAAGTG TTGGCAAAGA 50076 |||| |||| ||||| ||| |||||||||| ||| |||||| |||||||||| |||||||||| CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 240 GATTTGATGC GATATTTGAG AGCATGATTG ATCAAAGACA GAAAATGGAT AGAAATTCTG 50136 ||| |||| ||||||||| |||||||||| |||||||||| |||| || | || | GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA -AAAA---AT -G-AA---T- 290 AGATGGGAGC TGGTGTTGGT CAAGAAAGCA AGGATTTTTT GCAAGTTTTG CTCAAGTTGA 50196 ||| | ||| ||||| |||||||||| |||| ||||| |||||||||| || ||||||| AGA----A-A TGGGGTTGGC CAAGAAAGCA AGGACTTTTT GCAAGTTTTG CTGAAGTTGA 345 AAGATGAAGC AGATTCCAAA ATGCCTCTGA CTATGATTGA ACTCAAAGCC TTACTCATGG 50256 |||||||||| |||| ||||| |||||||||| | |||| ||| |||||||||| ||||| | | AAGATGAAGC AGATCCCAAA ATGCCTCTGA CCATGACTGA ACTCAAAGCC TTACTTACG. 404 TATGATCTGT TACTTCCAGT ATATGCGATT TTGATTGTTT CCATTAGATG ACTGAACTGT 50316 .......... .......... .......... .......... .......... .......... 404 TGGTTGCTAA CTATTTATTG GACTGCACTA AGGAAAGAGT CATTTAGCAT CAAACAATAT 50376 .......... .......... .......... .......... .......... .......... 404 ATAGGCTTTA ATCATATCAA AAATATGTGA AGACTAAAGT GAGAACCTTA AGCTGAACAC 50436 .......... .......... .......... .......... .......... .......... 404 CTATATACAG TTGTACAAAT AAAAAATTGT TGTACATGAT AATAACTTTA CGAATACCAT 50496 .......... .......... .......... .......... .......... .......... 404 GAACAGGATA TGGTTGTTGG TGGAACTGAC ACTACCGCCA ACGTAGTTGA GTTTGCCATG 50556 |||| |||||||||| ||||||||| |||| |||| || |||||| |||||||||| ......GATA TGGTTGTTGG TGGAACTGAA ACTAGTGCCA ACACAGTTGA GTTTGCCATG 458 GCTGAGATTA TGAA 50570 |||| |||| |||| ACTGAAATTA TGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (49837 50255,50503 50570) ******************************************************************************** EST sequence 321 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 49639 to 57057): Exon 1 50212 50255 ( 44 n); cDNA 1 44 ( 44 n); score: 0.909 Intron 1 50256 50502 ( 247 n); Pd: 0.994 (s: 0.91), Pa: 0.999 (s: 0.86) Exon 2 50503 51143 ( 641 n); cDNA 45 684 ( 640 n); score: 0.900 Intron 2 51144 51308 ( 165 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0) Exon 3 51309 51343 ( 35 n); cDNA 685 718 ( 34 n); score: 0.629 MATCH C08HBa0060C12.1+ SGN-E378974- 0.900 720 0.989 C PGS_C08HBa0060C12.1+_SGN-E378974- (50212 50255,50503 51143,51309 51343) Alignment (genomic DNA sequence = upper lines): CCAAAATGCC TCTGACTATG ATTGAACTCA AAGCCTTACT CATGGTATGA TCTGTTACTT 50271 |||||||||| |||||| ||| | |||| ||| |||||||||| ||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 CCAGTATATG CGATTTTGAT TGTTTCCATT AGATGACTGA ACTGTTGGTT GCTAACTATT 50331 .......... .......... .......... .......... .......... .......... 44 TATTGGACTG CACTAAGGAA AGAGTCATTT AGCATCAAAC AATATATAGG CTTTAATCAT 50391 .......... .......... .......... .......... .......... .......... 44 ATCAAAAATA TGTGAAGACT AAAGTGAGAA CCTTAAGCTG AACACCTATA TACAGTTGTA 50451 .......... .......... .......... .......... .......... .......... 44 CAAATAAAAA ATTGTTGTAC ATGATAATAA CTTTACGAAT ACCATGAACA GGATATGGTT 50511 ||| ||||| .......... .......... .......... .......... .......... .GATTTGGTT 53 GTTGGTGGAA CTGACACTAC CGCCAACGTA GTTGAGTTTG CCATGGCTGA GATTATGAAC 50571 || ||||||| ||||||| || |||||| |||||||||| |||||||||| ||| ||||| GTCGGTGGAA CTGACACAAC TTCCAACGCG GTTGAGTTTG CCATGGCTGA AATTTTGAAC 113 AAACGAGATA TCTTGAGGAA ATTACAACAA GAACTAGATA CAGTCGTGGG AAAAGATAAC 50631 |||| ||||| || |||| || | |||||||| ||| |||||| |||| ||||| |||||||||| AAACCAGATA TCCTGAGAAA AATACAACAA GAAGTAGATA CAGTTGTGGG AAAAGATAAC 173 ATAGTGGAAG AGTCTCATAT TCAACAGTTG CCATATTTCT ATGCAGTTAT GAAAGAAGCC 50691 |||||||||| |||||||||| ||||||||| |||||| ||| ||||||| || |||||||||| ATAGTGGAAG AGTCTCATAT TCAACAGTTA CCATATCTCT ATGCAGTGAT GAAAGAAGCC 233 TTGCGTTTAC ATCCAGCTCT TCCACTCTTG GTGCCACATT GTCCTAGTGA GACAGTCACT 50751 |||| ||| ||||||| || ||||||||| | || |||| |||||||||| |||| ||||| ATGCGCATAC ATCCAGCCCT CCCACTCTTG GCTCCTCATT GTCCTAGTGA GACAATCACT 293 GTTGGAGGAT ACACTATTCC TGAAGGATCT CGTGTATTTA TAAATGTATG GGCTATACAG 50811 ||||| |||| ||||| |||| | |||| ||| ||||| ||| |||||||||| ||||||||| GTTGGTGGAT ACACTGTTCC TAAAGGGTCT CGTGTTTTTG TAAATGTATG GGCTATACAC 353 CGAGATCCTT CTATATGGGA AAATCCAACT GAGTTCCGTC CAGAGAGATT TTTGGACAAT 50871 ||||||||| |||| ||| | ||||||||| |||||| ||| |||||||||| |||||| ||| AGAGATCCTT CTATGTGGAA AAATCCAACA GAGTTCTGTC CAGAGAGATT TTTGGATAAT 413 AAGTGGGATT ATAGTGGAAA TGATTTCAAC TATTTCCCAT TTGGTTCTGG CAGAAGAATC 50931 || ||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAATGGAATT ATAGTGGAAA TGATTTCAAC TATTTCCCAT TTGGTTCTGG CAGAAGAATG 473 TGTGCGGGGA TAGGCATGGC AGAGAGGATG TTCATGTATT CACTGGCTTC ACTCGTGCAT 50991 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||| | ||| TGTGCGGGGA TAGCCATGGC AGAGAGGATG TTCATGTATT CACTGGCTTC ACTCATTCAT 533 TCTTTCGACT GGAAATTGCC TGAAGGAGAG ACATTAGACC TCACAGAGAA GTTTGGGATT 51051 |||||||| | |||||||||| |||||||||| || ||||||| | | |||||| |||| | ||| TCTTTCGATT GGAAATTGCC TGAAGGAGAG ACGTTAGACC TTAAAGAGAA GTTTTGTATT 593 GTTCTGAAGA AGAAGATGCC TCTGGTGGCT ATACCTACTC CAAGATTATC CAATCCAACA 51111 | | |||||| |||| ||||| |||||||||| |||||||||| ||||||| || |||||||||| GCTTTGAAGA AGAAAATGCC TCTGGTGGCT ATACCTACTC CAAGATTGTC CAATCCAACA 653 CTCTATGAGT AAAATAAAAC ATGTTGCTCT ATCCAAATGG ACAATAACAT ATATCAGTAC 51171 | ||||||| || |||||| |||| | || | CAGTATGAGT AAGATAAAA- ATGTATCACT GT........ .......... .......... 684 TGCAGTAATT ATTATATGCT TATTGATAAA TCTGTATATT TTAATTTGTG GTGTAAGGTA 51231 .......... .......... .......... .......... .......... .......... 684 TCCATAAAAG TATGGTTTTA ATGAGCACAT ATGGTTGTAA TTATTCTCAT TGAGGTTTGC 51291 .......... .......... .......... .......... .......... .......... 684 TATCTCCTGT TTCCTACCTT TTGCTAGTGT TTTTTATATA ACTATTGAAA TG 51343 | ||||| ||| ||| | | || | ||| || .......... .......TAT GTGCTAATGT CTTTCA-AAG ACAAATGATT TG 718 hqPGS_C08HBa0060C12.1+_SGN-E378974- (50212 50255,50503 51143) ******************************************************************************** EST sequence 90 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 46978 to 55679): Exon 1 49290 50108 ( 819 n); cDNA 1 813 ( 813 n); score: 0.847 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.847 819 1.006 C PGS_C08HBa0060C12.1+_SGN-E553649+ (49290 50108) Alignment (genomic DNA sequence = upper lines): ATCCCTCTAA CAATGTCTAT CAAATCCCTT TTTGATGATT TTTTTCCATG GCCCCTTCAA 49349 || |||| | ||| ||| | |||| ||||| |||||| | ||| ||||| |||||||||| ATGTCTCTCA -AAT-TCT-T CAAACCCCTT TTTGAT--TC TTTC-CCATG GCCCCTTCAA 54 GAACTCACTG TTGAGCAAAA GGGTGTGTTT TTATCCTGTT TTCTTGGTGT TTTAGCTTTA 49409 |||||| || |||||||| | || | ||||| || ||||| |||||||| | |||||||||| CAACTCAATG TTGAGCAACA GGCTATGTTT TTCGTCTGTT TTCTTGGTTT TTTAGCTTTA 114 CTATGGTTTT TCATCAGAAA GTCAAACAAG GGGTTGCCAC CAGGCCCTAA AGCTTTGCCC 49469 || ||||||| ||||||| || || ||||| || |||||| |||| ||||| |||||||||| CTTTGGTTTT TCATCAGTAA CTCGAACAAA GGTCTGCCAC CAGGGCCTAA AGCTTTGCCC 174 TTGATAGGTA ATCTTCATTC TCTTGAACCT CAACTTCATA CCTATTTTGC ATCTCTTTCC 49529 |||||||||| |||| ||||| |||||| ||| ||||||| | |||||||||| |||||| ||| TTGATAGGTA ATCTCCATTC TCTTGATCCT GAACTTCACA CCTATTTTGC ATCTCTGTCC 234 CAAACGTATG GCCCCATATG TAGACTCTGG CTTGGTAAAA AAATTGGGAT TATTATTACT 49589 |||| |||| ||||||| || |||| ||||| |||||| ||| || ||||||| |||||||||| CAAATTTATG GCCCCATTTG TAGAATCTGG CTTGGTCAAA AACTTGGGAT TATTATTACT 294 TCTCCTGAAT TAGCTCGTGA GGTTCTTAAG GATCAAGATA CCATTTTTGC TAACAGAGAT 49649 || || |||| ||||||| || ||||| ||| ||| |||||| |||||||| ||||||||| TCACCAGAAT TAGCTCGCGA CGTTCTAAAG GATAAAGATA TTATTTTTGC TAACAGAGAC 354 GTCCCTGCTG CTGGTAGAGA AGCTACATAT GGTGGCAATG ACATAACTTG GACTCCTTAT 49709 || ||||||| ||| ||| | | ||||| ||| |||||| ||||| ||| || | ||||| GTGCCTGCTG CTGCAGTAGA AATTTCATAT GGTTGCAATG ACATACTTTG GAATTCTTAT 414 GGACCCAAAT GGCGTATGTT GAGGAAGGTT TGTGTTCGTG ATATGCTTAG TTCTTCTACT 49769 ||||| ||| |||| ||| | ||| ||| || |||||||| | |||||||||| || ||||||| GGACCACAAT GGCGAATGAT GAGAAAGCTT TGTGTTCGCG ATATGCTTAG TTGTTCTACT 474 TTAGATTCTG TTTATGCATT AAGGAAAAAG GAGCTTAGAC AGACAATCAA TTACTTCTAT 49829 |||||||||| ||| |||| | |||| || | |||||||||| | | || || |||||||||| TTAGATTCTG TTTGTGCACT AAGGCGAAGG GAGCTTAGAC AATCGATGAA TTACTTCTAT 534 AACAAGGCAG GATCGCCTGT GAATGTTGGT GAACAGATGT TCTTGACTAT TCTTAATGTG 49889 | ||| | | | || || ||| |||||| || ||||||| |||||||| | |||||||| AGTAAGAAGG GTTTACCAGT GAACGTTGGT GAGCAGATGT TCTTGACTGT GTTTAATGTG 594 ATTACAAGCA TGTTATGGGG TGCTACAGTG AAGGGTGAGG AAAGAGCTAA TCTTGGGGCA 49949 |||||||||| |||||||||| | |||||| |||||||||| |||||||||| |||||||||| ATTACAAGCA TGTTATGGGG TAGCACAGTG AAGGGTGAGG AAAGAGCTAA TCTTGGGGCA 654 GAGTTTAGGC ATGTTGTGAA TGAAATGACT GAGCTGTTAG GTACTCCAAA TGTTTCTGAT 50009 ||||||||| ||||||||| ||| ||| || | ||||| ||| ||| || | |||| ||| GAGTTTAGGT ATGTTGTGAG TGAGATGGCT GCGCTGTGCA GTATTCCCAA TCTTTCCGAT 714 TTTTATCCGG GCTTGGAGTG GTTCGATTTG CAGGGTGTTA CAAAGAAGAT GAAAGTGTTG 50069 || || || | | |||| || ||| ||||| |||||||||| |||||||||| ||| || || TTCTACCCAG GTTTGGCCTG GTTTGATTTC CAGGGTGTTA CAAAGAAGAT GAAGCTGCTG 774 GCAAAGAGAT TTGATGCGAT ATTTGAGAGC ATGATTGAT 50108 |||||||| |||| ||| |||||| ||| ||||||||| TTAAAGAGAT TTGAGAAGAT ATTTGATAGC ATGATTGAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (49290 50108) ******************************************************************************** EST sequence 104 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 47078 to 55539): Exon 1 49300 50073 ( 774 n); cDNA 3 770 ( 768 n); score: 0.831 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.831 774 1.003 C PGS_C08HBa0060C12.1+_SGN-E554337+ (49300 50073) Alignment (genomic DNA sequence = upper lines): CAATGTCTAT CAAATCCCTT TTTGATGATT TTTTTCCATG GC-CCCTTCA AGAACTCACT 49358 || ||| | |||| | | || ||| | ||| ||||| || || |||| | | |||| | CATATTCTCT CAAA-CGCAC CTTTTTGAAT CTTTCCCATG GCTCCTTTCA ACATCTCAAT 61 GTTGAGCA-A AAGGGTGTGT TTTTATCCTG TTTTCTTGGT GTTTTAGCTT TACTATGGTT 49417 | |||| | | ||| ||| |||| ||||| |||| ||||| ||||||||| |||| |||| GCTGAGAATA AAGCTTGTAG TTTTCTCCTG TTTTATTGGT TTTTTAGCTT TACTTTGGTG 121 TTTCATCAGA AAGTCAAACA AGGGGTTGCC ACCAGGCCCT AAAGCTTTGC CCTTGATAGG 49477 ||||||||| || ||||||| |||| ||||| |||||| ||| ||| |||||| |||||||||| TTTCATCAGT AACTCAAACA AGGGATTGCC ACCAGGGCCT AAACCTTTGC CCTTGATAGG 181 TAATCTTCAT TCTCTTGAAC CTCAACTTCA TACCTATTTT GCATCTCTTT CCCAAACGTA 49537 |||||| || ||||||| | || | || |||||||| |||||||||| ||||||| || TAATCTCTAT TCTCTTG-A- -TC--C--CA --CCTATTTT GCATCTCTTT CCCAAACTTA 232 TGGCCCCATA TGTAGACTCT GGCTTGGTAA AAAAATTGGG ATTATTATTA CTTCTCCTGA 49597 ||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||| ||| TGGCCCCATT TGTAGACTCT GGCTTGGTAA AAAAGTTGGG ATTATTATTA CTTCACCTAC 292 ATTAGCTCGT GAGGTTCTTA AGGATCAAGA TACCATTTTT GCTAACAGAG ATGTCCCTGC 49657 ||||||||| |||||||||| ||||| |||| ||||||||| |||||||||| ||||||| || CTTAGCTCGT GAGGTTCTTA AGGATAAAGA CACCATTTTT GCTAACAGAG ATGTCCCAGC 352 TGCTGGTAGA GAAGCTACAT ATGGTGGCAA TGACATAACT TGGACTCCTT ATGGACCCAA 49717 ||||| | | ||| ||| |||||||||| | |||| | |||||||||| ||||||| || TGCTGCAAAA GAATTATCAT ATGGTGGCAA TAGCATACTT TGGACTCCTT ATGGACCGAA 412 ATGGCGTATG TTGAGGAAGG TTTGTGTTCG TGATATGCTT AGTTCTTCTA CTTTAGATTC 49777 |||| | ||| |||||||||| |||| ||||| |||||||| |||| ||||| |||||||||| ATGGAGAATG TTGAGGAAGG TTTGCGTTCG CAATATGCTT AGTTATTCTA CTTTAGATTC 472 TGTTTATGCA TTAAGGAAAA AGGAGCTTAG ACAGACAATC AATTACTTCT ATAACAAGGC 49837 |||||||||| ||||||||| ||||||||| ||| | ||| |||||||||| | | || TGTTTATGCA CTAAGGAAAA GGGAGCTTAG ACAATCGATC AATTACTTCT ACAGTCAGAA 532 AGGATCGCCT GTGAATGTTG GTGAACAGAT GTTCTTGACT ATTCTTAATG TGATTACAAG 49897 || | || || ||||||| |||| ||||| |||||||| | ||||||| |||||||||| GGGTTTACCA GTAAATGTTG GTGAGCAGAT GTTCTTGAGT TCACTTAATG TGATTACAAG 592 CATGTTATGG GGTGCTACAG TGAAGGGTGA GGAAAGAGCT AATCTTGGGG CAGAGTTTAG 49957 |||||||||| |||| |||| |||||||||| |||||||||| | |||||| | | |||||||| CATGTTATGG GGTGGCACAG TGAAGGGTGA GGAAAGAGCT ACTCTTGGAG CTGAGTTTAG 652 GCATGTTGTG AATGAAATGA CTGAGCTGTT AGGTACTCCA AATGTTTCTG ATTTTTATCC 50017 |||| |||| | ||||||| ||| |||| | ||| ||| ||| ||| | ||||||| || GCATATTGTC ACTGAAATGG CTGCGCTGGT CAGTATTCCC AATTATTCCG ATTTTTACCC 712 -GGGCTTGGA GTGGTTCGAT TTGCAGGGTG TTACAAAGAA GATGAAA-GT GTTGGCAA 50073 |||||||| ||||| ||| || || |||| || |||| || ||||||| || |||||||| GGGGCTTGGC CTGGTTTGAT TTCCAAGGTG TTGCAAAAAA GATGAAAGGT GTTGGCAA 770 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (49300 50073) ******************************************************************************** EST sequence 132 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 48648 to 54249): Exon 1 49463 49948 ( 486 n); cDNA 1 486 ( 486 n); score: 0.891 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.891 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (49463 49948) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGTAATC TTCATTCTCT TGAACCTCAA CTTCATACCT ATTTTGCATC 49522 |||||||||| |||||||||| | |||||||| |||||||||| ||||| |||| |||| ||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTTTCCCAA ACGTATGGCC CCATATGTAG ACTCTGGCTT GGTAAAAAAA TTGGGATTAT 49582 ||||||| || | ||||||| |||| ||||| | |||||||| ||||||||| |||||||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TATTACTTCT CCTGAATTAG CTCGTGAGGT TCTTAAGGAT CAAGATACCA TTTTTGCTAA 49642 | ||||||| |||| |||| |||| ||||| |||||||||| ||||||||| |||||||||| TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGATGTC CCTGCTGCTG GTAGAGAAGC TACATATGGT GGCAATGACA TAACTTGGAC 49702 ||||||||| || ||||| ||||||||| |||||||||| || | ||||| || |||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TCCTTATGGA CCCAAATGGC GTATGTTGAG GAAGGTTTGT GTTCGTGATA TGCTTAGTTC 49762 |||||||||| || || |||| |||||||||| |||||||||| |||| || | |||||| | | TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACTTTA GATTCTGTTT ATGCATTAAG GAAAAAGGAG CTTAGACAGA CAATCAATTA 49822 |||||||||| ||| || ||| ||||| | || | || |||| |||||||| | || ||||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTCTATAAC AAGGCAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTCT TGACTATTCT 49882 ||| ||||| || |||||| |||||||||| |||||||||| |||||||| | ||||| || CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATT ACAAGCATGT TATGGGGTGC TACAGTGAAG GGTGAGGAAA GAGCTAATCT 49942 |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||| ||| TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGGGC 49948 |||||| TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (49463 49948) ******************************************************************************** EST sequence 207 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 49451 to 55500): Exon 1 50827 51119 ( 293 n); cDNA 3 295 ( 293 n); score: 0.911 Intron 1 51120 52100 ( 981 n); Pd: 0.816 (s: 1.00), Pa: 0.906 (s: 0.56) Exon 2 52101 52170 ( 70 n); cDNA 296 359 ( 64 n); score: 0.557 Intron 2 52171 52715 ( 545 n); Pd: 0.339 (s: 0.56), Pa: 0.135 (s: 0) Exon 3 52716 52745 ( 30 n); cDNA 360 388 ( 29 n); score: 0.567 Intron 3 52746 52834 ( 89 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.73) Exon 4 52835 53125 ( 291 n); cDNA 389 673 ( 285 n); score: 0.784 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.817 684 1.016 C PGS_C08HBa0060C12.1+_SGN-E320419+ (50827 51119,52101 52170,52716 52745,52835 53125) Alignment (genomic DNA sequence = upper lines): TGGGAAAATC CAACTGAGTT CCGTCCAGAG AGATTTTTGG ACAATAAGTG GGATTATAGT 50886 |||||||||| |||||||||| || ||| || |||||| ||| | ||||| || ||| | ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGAAATGATT TCAACTATTT CCCATTTGGT TCTGGCAGAA GAATCTGTGC GGGGATAGGC 50946 |||||||||| | | ||| || ||| |||||| |||||||||| ||||||||| |||| ||| | GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCG TGCATTCTTT CGACTGGAAA 51006 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| ||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 TTGCCTGAAG GAGAGACATT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAG 51066 |||||||||| |||||||||| |||| | ||| |||||||||| | | ||||| ||||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGAGTAAAAT 51126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA....... 295 AAAACATGTT GCTCTATCCA AATGGACAAT AACATATATC AGTACTGCAG TAATTATTAT 51186 .......... .......... .......... .......... .......... .......... 295 ATGCTTATTG ATAAATCTGT ATATTTTAAT TTGTGGTGTA AGGTATCCAT AAAAGTATGG 51246 .......... .......... .......... .......... .......... .......... 295 TTTTAATGAG CACATATGGT TGTAATTATT CTCATTGAGG TTTGCTATCT CCTGTTTCCT 51306 .......... .......... .......... .......... .......... .......... 295 ACCTTTTGCT AGTGTTTTTT ATATAACTAT TGAAATGTGT TTGTAGTGAT TATACTTCTC 51366 .......... .......... .......... .......... .......... .......... 295 TCTTTTGTAC GATGAATTAT ATATGGAGAC GCGTTCCCTG TAATTTGGAT CCTTGGATCC 51426 .......... .......... .......... .......... .......... .......... 295 ATTTCTAACT AATTCAATGG TTTCTATAAA GTTGATACAC ATCAAGAATA TGAAAGCTGC 51486 .......... .......... .......... .......... .......... .......... 295 AACTCAGTCT GCCTGAATGA TTGTATCCCC AGTATTTGAT TCTATTTCTT CCCGAAATCT 51546 .......... .......... .......... .......... .......... .......... 295 TCTCAACACA AGTTATAATA CCTAATCAAG TTATTCTTCT GCTGACAGTT TCCTCGTTCA 51606 .......... .......... .......... .......... .......... .......... 295 CAATGGTCGT TTCTGTGTTC CAGATGGCAT CCGGAGGTGA TCATTTCTGA GGTGTACAGT 51666 .......... .......... .......... .......... .......... .......... 295 ACGCCACTCA CTTCTAGCAG TCGTTCCAGA AAGGCTTGGG CACACTTGTT AATCTTAGCA 51726 .......... .......... .......... .......... .......... .......... 295 TGATTTTTCC ACCAGCTGAT AGACGTGCAA GCAGAAGGAC CATTCAAATG CTTGATGATA 51786 .......... .......... .......... .......... .......... .......... 295 TGTTACGATC TTATCTAATG GATTTATGAG GTAAATGGGA TGATCACCTT CTGTTGATAA 51846 .......... .......... .......... .......... .......... .......... 295 AGTTCAATAA GAACAACAGC TATCCGACGA GCATCTAAAT GGTTGTGTGC GACCTTTGTA 51906 .......... .......... .......... .......... .......... .......... 295 CAGACAACAA TGTAGATCGC CCATAGGTTG GTTCAAACCG AGTAGAGTAC AGCTGATTGG 51966 .......... .......... .......... .......... .......... .......... 295 CCCAATTTTG TTCATGAAGC CCGAGAAAAA GGTAATAATA TTCAAGAAAG GCTTAAGACA 52026 .......... .......... .......... .......... .......... .......... 295 ATTCAGAATT GATAGGTGAC TCTGTGGATA TAGCCTTCGT TAAGGTGTTA TGGCAAAATC 52086 .......... .......... .......... .......... .......... .......... 295 ATGATTCCAA CTAGGCTACA TTCGAAGTGA AGAAAGATAT GAAAGAATCA CATGTCGGAG 52146 | ||| | ||| | | || | | | |||| ||| ||| | .......... ....G--ACA GAC-AAG-GT ATCAAAAAGT G-AAGATTCA TTTGTGTTAA 336 ATGATAATTG CGAAGTGACC TTAAGTTGGA AGATTGTTTC CCATACACTC TTTCATTCCT 52206 | | || | | ||| | || | ACAACAAGGG GCCATTGA-C TTCA...... .......... .......... .......... 359 CGTGTTTTAT TTTTGTTTGT ACTTCTACAA CTAGCTAGTA AGACTAAGTT TGGCATAAGC 52266 .......... .......... .......... .......... .......... .......... 359 ATCTAGGGCA TCCAAGTTCT AATGTTTTGT TCCATTTATG GAATTTTCGG TTGTTTGAGA 52326 .......... .......... .......... .......... .......... .......... 359 AATAAAAATC AATTTTAAGT AACTACCTTT GATTGTCTTA CACATGCAAG TTTTGCAAAA 52386 .......... .......... .......... .......... .......... .......... 359 ATAAAACTCA GCCTTTTCCT AATTTTGATA GTTGTTTTGC AAGTGTTTTT GATGTCATTC 52446 .......... .......... .......... .......... .......... .......... 359 ATAATGATGT TTGGGGCATT TCAACAATTA TTTTTCATTA GTTTAACTCA AAATTTGCAT 52506 .......... .......... .......... .......... .......... .......... 359 TTCAACAAAA TTTAATGAAA AAATTATTTA AATTAATTAG GTGACTTTCT AAATGAAAAC 52566 .......... .......... .......... .......... .......... .......... 359 TCAATAGTTG AGTGACTTGA TTTTAGAAAT TCTGTGAAAA AAATCTAAGA CTTTGAGGTA 52626 .......... .......... .......... .......... .......... .......... 359 AAAACTAAAA CGGTAAGTTG AATGAGAAGA AGTATTAGTT GAGTGGCCAT CTGGGTTATT 52686 .......... .......... .......... .......... .......... .......... 359 AACTGCCAAA TATATCAATT ATATTATAGC TGCCAAATCT CAACTTTTAT GGGTGCAAAA 52746 | |||| | || || | | | | ||| .......... .......... .........T CACTAAATAT AAATGTTGAA GTG-GAAAA. 388 TCTCAACATT CATGGCTGCC AAATTTAAAT ATATATGGCT GCCAAATCTT TGACAAAGGA 52806 .......... .......... .......... .......... .......... .......... 388 AGAAAACTTT CTTGAATCAA AAAAGCCTTG AGCTTCCCAC TACATTGGTT CTGCCAATT- 52865 || ||||||||| ||| || || |||||| || .......... .......... ........TG -GCTTCCCAC CACACTGTTT CTGCCATTTC 419 TC-CATTTCC TTCTTAGGCT CAAACAATGT CTCTCAAATT CTCCAAACCT CTGTTTGATT 52924 || ||||| ||||||||| | | ||||| | || ||||| || ||||||| ||| ||||| TCTCATTTTT CTCTTAGGCT GATATAATGT CACTAAAATT CTTCAAACCT TTGTGTGATT 479 CTTTCTCATT TCCCTGGCAA GAATCAAATA TTGAGCAAAA AAGGTGCATT TTTATCCTAT 52984 ||||| ||| ||||||||| ||| ||||| |||| || | |||| ||| ||| |||||| CTTTCCCATG GCCCTGGCAA GAACAAAATA GTGAG-AAGA GTGGTGTATT TTTCTCCTAT 538 GTTCTTGGTA TTATAGGTTT ACGATGGTTT CTTTGGCTTT TCACTAACAA GTCAAAAAAG 53044 |||||||| | | ||| ||| | ||||||| ||||| ||| || ||||| |||||| || GTTCTTGGCA GTTTAGCTTT AATATGGTTT CTTTGTTTTT ACATCAACAA GTCAAAGGAG 598 GGACAACCCC CGTTGCCACC GGGGCCTAAA GCTTTACCTT TACTAGGTAA TCTCCATTCT 53104 |||| ||| | | || | ||||||||| ||||| |||| | ||| |||| |||||| ||| GGACGACCGC CATT---A-- TGGGCCTAAA GCTTTGCCTT TGCTANGTAA TCTCCACTCT 653 GTTGAACCTC AACTTCGCAC C 53125 |||| || | |||||| ||| | CTTGATCC-C AACTTCACAC C 673 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (50827 51119,52101 52170,52716 52745,52835 53125) ******************************************************************************** EST sequence 58 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 48072 to 53863): Exon 1 50625 51133 ( 509 n); cDNA 1 508 ( 508 n); score: 0.884 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.884 509 0.715 C PGS_C08HBa0060C12.1+_SGN-E551573+ (50625 51133) Alignment (genomic DNA sequence = upper lines): AGATAACATA GTGGAAGAGT CTCATATTCA ACAGTTGCCA TATTTCTATG CAGTTATGAA 50684 |||||| || || ||||||| |||||||||| || || ||| ||| |||||| |||| ||||| AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 60 AGAAGCCTTG CGTTTACATC CAGCTCTTCC ACTCTTGGTG CCACATTGTC CTAGTGAGAC 50744 ||||| ||| || | |||| ||||| ||| || |||||| |||||||||| | ||||| || AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 120 AGTCACTGTT GGAGGATACA CTATTCCTGA AGGATCTCGT GTATTTATAA ATGTATGGGC 50804 | |||||| |||||||||| || ||||| | |||||||||| || || |||| |||||||||| ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 180 TATACAGCGA GATCCTTCTA TATGGGAAAA TCCAACTGAG TTCCGTCCAG AGAGATTTTT 50864 |||||| || |||||||||| | ||| ||| |||||| ||| |||||||||| |||||||||| TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 240 GGACAATAAG TGGGATTATA GTGGAAATGA TTTCAACTAT TTCCCATTTG GTTCTGGCAG 50924 ||||||||| ||||||| || |||||||||| |||||||||| || ||||||| |||||||||| GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 300 AAGAATCTGT GCGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT 50984 |||||||||| | |||||||| |||||||||| |||||||||| |||||| ||| ||||||| || AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 360 CGTGCATTCT TTCGACTGGA AATTGCCTGA AGGAGAGACA TTAGACCTCA CAGAGAAGTT 51044 | | |||||| || || |||| |||||||||| |||||||||| |||||| | |||||| ||| CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 420 TGGGATTGTT CTGAAGAAGA AGATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA 51104 || ||| | ||| ||||| | || ||||| |||| ||||| |||||||||| |||| ||||| TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 480 TCCAACACTC TATGAGTAAA ATAAAACAT 51133 |||||||||| ||||||||| || ||| || TCCAACACTC TATGAGTAAG AT-AAAGAT 508 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (50625 51133) ******************************************************************************** EST sequence 287 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 50209 to 52779): Exon 1 50819 51078 ( 260 n); cDNA 1 261 ( 261 n); score: 0.975 Intron 1 51079 51171 ( 93 n); Pd: 0.988 (s: 0.89), Pa: 0.000 (s: 0) Exon 2 51172 51184 ( 13 n); cDNA 262 274 ( 13 n); score: 0.769 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.975 273 0.754 C PGS_C08HBa0060C12.1+_SGN-E234103- (50819 51078,51172 51184) Alignment (genomic DNA sequence = upper lines): CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 50878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 50938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGGCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 50998 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 51058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAGAAGAT G-CCTCTGGT GGCTATACCT ACTCCAAGAT TATCCAATCC AACACTCTAT 51117 |||||||||| | | | |||| AGAAGAAGAT GTCTTATGGT A......... .......... .......... .......... 261 GAGTAAAATA AAACATGTTG CTCTATCCAA ATGGACAATA ACATATATCA GTACTGCAGT 51177 | ||| .......... .......... .......... .......... .......... ....TTTAGT 267 AATTATT 51184 |||||| GATTATT 274 hqPGS_C08HBa0060C12.1+_SGN-E234103- (50819 51078) ******************************************************************************** EST sequence 297 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 50212 to 52779): Exon 1 50822 51078 ( 257 n); cDNA 1 259 ( 259 n); score: 0.961 Intron 1 51079 51171 ( 93 n); Pd: 0.988 (s: 0.89), Pa: 0.000 (s: 0) Exon 2 51172 51184 ( 13 n); cDNA 260 272 ( 13 n); score: 0.769 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.961 270 0.750 C PGS_C08HBa0060C12.1+_SGN-E234174- (50822 51078,51172 51184) Alignment (genomic DNA sequence = upper lines): CTATATGGGA AAATCCAACT GA-GTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 50880 |||||||||| |||||| ||| || ||||||| |||||||||| |||||||||| |||||||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 50940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 51000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CTGAAGGAGA GACATTAGAC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 51060 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAGATG- CCTCTGGTGG CTATACCTAC TCCAAGATTA TCCAATCCAA CACTCTATGA 51119 ||||||||| | | |||| AAGAAGATGT CTTATGGTA. .......... .......... .......... .......... 259 GTAAAATAAA ACATGTTGCT CTATCCAAAT GGACAATAAC ATATATCAGT ACTGCAGTAA 51179 | ||| | .......... .......... .......... .......... .......... ..TTTAGTGA 267 TTATT 51184 ||||| TTATT 272 hqPGS_C08HBa0060C12.1+_SGN-E234174- (50822 51078) ******************************************************************************** EST sequence 143 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 50287 to 52238): Exon 1 50887 51119 ( 233 n); cDNA 1 233 ( 233 n); score: 0.931 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.931 233 0.879 C PGS_C08HBa0060C12.1+_SGN-E243190+ (50887 51119) Alignment (genomic DNA sequence = upper lines): GGAAATGATT TCAACTATTT CCCATTTGGT TCTGGCAGAA GAATCTGTGC GGGGATAGGC 50946 |||||||||| |||||||| | |||||||||| ||||| |||| || | || || |||||||||| GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCG TGCATTCTTT CGACTGGAAA 51006 |||||||||| |||||||||| ||||||||| ||||| ||| | |||||||| |||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCTGAAG GAGAGACATT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAG 51066 ||||| |||| ||||||| || |||||||||| |||||||||| |||||||||| ||||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA 51119 |||||||||| |||||||||| |||||||||| || || ||| ||| |||||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (50887 51119) ******************************************************************************** EST sequence 158 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 52388 to 55155): Exon 1 53440 53847 ( 408 n); cDNA 3 404 ( 402 n); score: 0.830 Intron 1 53848 54075 ( 228 n); Pd: 0.989 (s: 0.92), Pa: 0.999 (s: 0.84) Exon 2 54076 54143 ( 68 n); cDNA 405 472 ( 68 n); score: 0.868 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.835 476 1.008 C PGS_C08HBa0060C12.1+_SGN-E205363+ (53440 53847,54076 54143) Alignment (genomic DNA sequence = upper lines): GGATTGCCTG TGAATGTTGG TGAAAAGATG TTCTTGACTA TGTTTAACGT GATTACAAGC 53499 |||| ||||| |||||||||| |||| ||||| || |||||| |||| || |||||||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA ATCTTGGGGC AGAGTTTAGG 53559 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||| ||||| ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 CATGTTGTGT AT-GGAATAC TGAGCTGTTA GGTACTCCAA ATGTTTCCGA --TTT----G 53612 |||||||| | || | |||||||||| | |||||||| || ||||||| ||| | GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 --CTTGGACT GGTTCGATTT GCAGGGTGTT ACAAAGAAGA TGAAAGTGTT GGCAAAGAGA 53670 |||| || |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TTTGATACGA TATTTGAGAG CATGATTGAT CAAAGACAGA AAATGGATGG AAATACTGAG 53730 | ||||| | |||||||||| |||||||||| |||||||| | ||| || | |||| || TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACA-A AAA---AT-G -AATA--GA- 293 ATGGGAGCTG GTGTTGGTCA AGAAAGCAAG GACTTTTTGC AAGTTTTGCT GAAGTTGAAA 53790 | | || | ||||| || |||||||||| |||||||||| |||||||||| |||||||||| A----A--TG GGGTTGGCCA AGAAAGCAAG GACTTTTTGC AAGTTTTGCT GAAGTTGAAA 347 GATGAAGCAG ATTCCAAAAT GCCTCTGTCT ATGACTGAAC TCAAAGCCTT ACTTATGGTA 53850 |||||||||| || ||||||| ||||||| | |||||||||| |||||||||| ||||| | GATGAAGCAG ATCCCAAAAT GCCTCTGACC ATGACTGAAC TCAAAGCCTT ACTTACG... 404 TGTTTTATCG GTGCGCATTT TGATTGTTTC CATTAGATGT CTGAACTGTT GTTTGCTAAC 53910 .......... .......... .......... .......... .......... .......... 404 TTGTTATTGG ACTGTACTAA GAAAAGAGTC ATTTAGCATC AAATATTATG TAAAGCTTAA 53970 .......... .......... .......... .......... .......... .......... 404 TTCAGACTTA ATTGAGAACC TTGAACTGAA CACCTATATA TATGTACAGT TCTACAAATT 54030 .......... .......... .......... .......... .......... .......... 404 AAAAAATGTT GTACATGATA ATAACTTCAC AAATACTGTG AACAGGATAT GGTTGTCGGT 54090 ||||| |||||| ||| .......... .......... .......... .......... .....GATAT GGTTGTTGGT 419 GGAACTGCTA CGACCTCCAA CACGGTTGAG TTTGCCATGG CTGAAATTAT GAA 54143 ||||||| | | | |||| ||| |||||| ||||||||| |||||||||| ||| GGAACTGAAA CTAGTGCCAA CACAGTTGAG TTTGCCATGA CTGAAATTAT GAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (53440 53847,54076 54143) ******************************************************************************** EST sequence 206 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 53264 to 59070): Exon 1 54397 54689 ( 293 n); cDNA 3 295 ( 293 n); score: 0.884 Intron 1 54690 54999 ( 310 n); Pd: 0.787 (s: 0.96), Pa: 0.000 (s: 0) Exon 2 55000 55006 ( 7 n); cDNA 296 302 ( 7 n); score: 0.714 Intron 2 55007 55281 ( 275 n); Pd: 0.707 (s: 0), Pa: 0.000 (s: 0.74) Exon 3 55282 55358 ( 77 n); cDNA 303 381 ( 79 n); score: 0.701 Intron 3 55359 55433 ( 75 n); Pd: 0.981 (s: 0.60), Pa: 0.000 (s: 0.61) Exon 4 55434 55728 ( 295 n); cDNA 382 673 ( 292 n); score: 0.785 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.819 672 0.999 C PGS_C08HBa0060C12.1+_SGN-E320419+ (54397 54689,55000 55006,55282 55358,55434 55728) Alignment (genomic DNA sequence = upper lines): TGTGAAAATC CAACTGAGTT CCATCCAGAA AAATTTTTGG ACAATAAATG TGATTATAGT 54456 || ||||||| |||||||||| |||||| ||| | |||| ||| | |||||||| || | ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGAAATGATT TGAACTATTT CCCATTTGGT TCTGGCAGAA GAATGTGTGC GGGGATAGCC 54516 |||||||||| ||| ||| || ||| |||||| |||||||||| |||| |||| |||| ||||| GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTTTTTACTG GCATCACTCA TTCATTCTTT CAACTGGACA 54576 |||||||||| |||||||||| || || |||| || ||||| | |||||||||| |||||| | ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 ATGTCTGAAG GGGAGAATTT AGACCTTACA GAGATGTTTG GGATTGTTCT GAAGAAGAAA 54636 || |||||| | |||| || |||| ||||| |||| ||||| | | ||||| |||||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATGCCTCTGG TGGCTATCCC AACTCCAAGA TTATCCAATC CAACACTCTA TGAGTAATAT 54696 |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA....... 295 TAAAATGTGT CTGTAGAGTG TTGTATTCCG CATGATGATT CTGTCTTTTG TGCTCTATGA 54756 .......... .......... .......... .......... .......... .......... 295 AAATTGATTC AAAGTTTTCT ATAAAGTTTG TACACATCAA GAATAAATAC ATAAAGTATG 54816 .......... .......... .......... .......... .......... .......... 295 TTTTCTTAGG TCTCTTGACA ATATTTTCTT GAGTTTACAA AATTAATTAA ACAAAAACAT 54876 .......... .......... .......... .......... .......... .......... 295 ATTATAAAGG TCAAATTAAA GTTGTCATGA ATTCATATCT TGATTCATAA GAAAGCATAG 54936 .......... .......... .......... .......... .......... .......... 295 AGAGTGTGCA AGAAGGCTCA AGACCCTTTT AGACTCGAGA AGGACCACAT TCCAACATTC 54996 .......... .......... .......... .......... .......... .......... 295 AAGGAAAGAT GTTTATAAAA TTCAATTAAA CAAAATAGTC AAAGTGTATT ATGGTATAAA 55056 || ||| ...GACAGAC .......... .......... .......... .......... .......... 302 AGGTTACAAG GATTATTATA GAGTTGCGGG AATAAAGAAG ATCAAGTGAA ATTAGTATTA 55116 .......... .......... .......... .......... .......... .......... 302 CAAAGCAAAA CCTTAAGCAA AGGTGTGTGA AATTTTTCCT AAAAGAAAGT AAATAAAAAG 55176 .......... .......... .......... .......... .......... .......... 302 GATCTTAAAG AGCATATTTC TATTGGCAAG AAGACAATAT ATATCTAATT ATATATTATC 55236 .......... .......... .......... .......... .......... .......... 302 TCTTAATCTG TCTTGTGCAC AGGAAGATGC ACCAGTTCTA GCTGGAAGGT ATCAACATCT 55296 ||||| ||||| | | .......... .......... .......... .......... .....AAGGT ATCAAAAAGT 317 GAAGATTCAT TTGCACTACC CAACAA-AGG TCATTGACTT CTTCACT-TA TTTGAATACC 55354 |||||||||| ||| || |||||| || ||||||||| | ||||| | | | ||| GAAGATTCAT TTGTGTTAAA CAACAAGGGG CCATTGACTT CATCACTAAA TATAAATGTT 377 CAAGGTACAG ATATATTAAT TTATTGCTGA TAGTTTTGAA AGAATCATAT ATCTGCCGAA 55414 ||| GAAG...... .......... .......... .......... .......... .......... 381 TACTCATTCA TTTATCAAGT GG-TGTTAGC TTCCCACAAC ATTGGTTCTG CCAATT-TC- 55471 | || | || ||||||| || | || ||||| ||| || || .......... .........T GGAAAATGGC TTCCCACCAC ACTGTTTCTG CCATTTCTCT 422 CATATCCCTC TTAGGCTCAA ATAATGTCTC TCAAATTCTT CAAACGTCTC TTTGATTTTT 55531 ||| | ||| ||||||| | |||||||| | | |||||||| ||||| | | | ||||| || CATTTTTCTC TTAGGCTGAT ATAATGTCAC TAAAATTCTT CAAACCTTTG TGTGATTCTT 482 ACTCATGTTC TTGGCAAGAA TCAAATATTG AGCAAAAGGG TGTATTTTTC TCCTATATTC 55591 | |||| | ||||||||| ||||| || || | | || |||||||||| |||||| ||| TCCCATGGCC CTGGCAAGAA CAAAATAGTG AGAAGAGTGG TGTATTTTTC TCCTATGTTC 542 TTGGTATTGT AGCTTTACTA TGGTTTCTTT GGCTTTTCAT AAACAAGTCA AAAAAGGGAC 55651 |||| | | | ||||||| || |||||||||| | ||| ||| ||||||||| || |||||| TTGGCAGTTT AGCTTTAATA TGGTTTCTTT GTTTTTACAT CAACAAGTCA AAGGAGGGAC 602 AACCCCAATT GCCACCGGGA CCTAAAGCTT TGCCTTTGAT AGGTAATCTC CATTCTCTTG 55711 ||| | ||| | ||| |||||||||| |||||||| | | |||||||| || ||||||| GACCGCCATT ---A-TGGG- CCTAAAGCTT TGCCTTTGCT ANGTAATCTC CACTCTCTTG 657 ATCCTCAACT TCACACC 55728 |||| ||||| ||||||| ATCC-CAACT TCACACC 673 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (54397 54689,55000 55006,55282 55358,55434 55728) ******************************************************************************** EST sequence 43 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 54964 to 57588): Exon 1 56023 56472 ( 450 n); cDNA 1 435 ( 435 n); score: 0.833 Intron 1 56473 56583 ( 111 n); Pd: 0.997 (s: 0.88), Pa: 0.999 (s: 0.94) Exon 2 56584 56870 ( 287 n); cDNA 436 722 ( 287 n); score: 0.909 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.863 737 1.021 C PGS_C08HBa0060C12.1+_SGN-E378935+ (56023 56472,56584 56870) Alignment (genomic DNA sequence = upper lines): AGACAAACGA TCAATTACTT CTATAGTCAG GAAGGATTGC CTGTGAATAT AGGTGAACAG 56082 |||| | | | |||||||||| ||||||||| || || | | |||||| | ||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGCTTAA TGTGATTACA AGCATGTTAT GGGGCGGCAC AGTGAAGGGT 56142 |||||||||| |||||||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAT CCACTCTTGG GGCAGAGTTT AGGCATGTTG TCACTAAGAT GACTGAACTG 56202 ||||||||| | |||||||| || |||||| |||||||||| | ||| |||| |||| || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TTAGGTACTC CAAATCTTTC TGATTTTTAT CCGGGCTTGG CCAGGTTTGA TTTGCAGGGT 56262 | ||| || | |||||||| ||||||||| |||||||||| || ||||||| ||| |||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTACAAAGA AGATGAAAGT ATTGGCAAAG AGATTTGATA AGATATTCGA GAGCATGATT 56322 |||| ||||| |||| || || ||| |||| |||||||||| ||||||| || ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATAAAAGAC AGGATATTGA TAGAAATGGT GGGATGGAAA CTGGTGTTGG CCAAGAAAAT 56382 ||| |||||| | | |||| | || |||| ||||||||| |||||||| GATCAAAGAC ---------A -A-AAAT--T -AGACAGAAA -TGGTGTTGG CCAAGAAAGC 345 AAGGATTTTT TGCAAGTTTT GCTGAAACTG AAAGATGATG AAGCTGCCAA AATGCCTTTG 56442 || || |||| |||||||||| ||| || || |||||||| | || |||||| ||||||| || AAAGACTTTT TGCAAGTTTT GCTCAAGTTG AAAGATGAAG CAGATGCCAA AATGCCTCTG 405 ACCATGCCTG AACTCAAAGC CTTACTCATG GTATGTTTTT CTCAATTGTG CATGCTACTA 56502 |||||| ||| || ||||||| |||||| ||| ACCATGACTG AAATCAAAGC CTTACTTATG .......... .......... .......... 435 CAGGAAAAAT CCAGTATCCA GCTCTACTGG TAGTATGAAT TTTGTTATAC ATGATAATAA 56562 .......... .......... .......... .......... .......... .......... 435 CTTCACAAAT ACTGTGAACA GGATATGGTT GTCGGTGGAA CTGACACAAC CTCCAACACG 56622 ||| ||||| |||||||||| |||||||||| |||||| || .......... .......... .GATTTGGTT GTCGGTGGAA CTGACACAAC TTCCAACGCG 474 GTTGAGTTTG CCATGGCTGA AATTGTGAAC AAACCATACG TCCTGAGGAA ATTACAAGAA 56682 |||||||||| |||||||||| |||| ||||| |||||| | ||||||| || | ||||| || GTTGAGTTTG CCATGGCTGA AATTTTGAAC AAACCAGATA TCCTGAGAAA AATACAACAA 534 GAAGTAGATA CAGTTGTGGG TAAAGATAAC ATAGTAGAAG AGTCTCATAT TCAACACTTA 56742 |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| |||||| ||| GAAGTAGATA CAGTTGTGGG AAAAGATAAC ATAGTGGAAG AGTCTCATAT TCAACAGTTA 594 CCATATTTCT ATGCAGTTAT GAAAGAAGTC TTGCGTCTAC ATCCAGCGCT TCCACTCTTG 56802 |||||| ||| ||||||| || |||||||| | |||| ||| ||||||| || ||||||||| CCATATCTCT ATGCAGTGAT GAAAGAAGCC ATGCGCATAC ATCCAGCCCT CCCACTCTTG 654 GTTCCTCATT GTCCTAGTGA GACGAGCACT GTTGGAGGAT ACACTGTTCC TAAAGGATCT 56862 | |||||||| |||||||||| ||| | |||| ||||| |||| |||||||||| |||||| ||| GCTCCTCATT GTCCTAGTGA GACAATCACT GTTGGTGGAT ACACTGTTCC TAAAGGGTCT 714 CGTGTTTT 56870 |||||||| CGTGTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (56023 56472,56584 56870) ******************************************************************************** EST sequence 187 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 54964 to 57656): Exon 1 56023 56472 ( 450 n); cDNA 1 435 ( 435 n); score: 0.833 Intron 1 56473 56583 ( 111 n); Pd: 0.997 (s: 0.88), Pa: 0.999 (s: 0.94) Exon 2 56584 56686 ( 103 n); cDNA 436 538 ( 103 n); score: 0.903 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.846 553 1.028 C PGS_C08HBa0060C12.1+_SGN-E206806+ (56023 56472,56584 56686) Alignment (genomic DNA sequence = upper lines): AGACAAACGA TCAATTACTT CTATAGTCAG GAAGGATTGC CTGTGAATAT AGGTGAACAG 56082 |||| | | | |||||||||| ||||||||| || || | | |||||| | ||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGCTTAA TGTGATTACA AGCATGTTAT GGGGCGGCAC AGTGAAGGGT 56142 |||||||||| |||||||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAT CCACTCTTGG GGCAGAGTTT AGGCATGTTG TCACTAAGAT GACTGAACTG 56202 ||||||||| | |||||||| || |||||| |||||||||| | ||| |||| |||| || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TTAGGTACTC CAAATCTTTC TGATTTTTAT CCGGGCTTGG CCAGGTTTGA TTTGCAGGGT 56262 | ||| || | |||||||| ||||||||| |||||||||| || ||||||| ||| |||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTACAAAGA AGATGAAAGT ATTGGCAAAG AGATTTGATA AGATATTCGA GAGCATGATT 56322 |||| ||||| |||| || || ||| |||| |||||||||| ||||||| || ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATAAAAGAC AGGATATTGA TAGAAATGGT GGGATGGAAA CTGGTGTTGG CCAAGAAAAT 56382 ||| |||||| | | |||| | || |||| ||||||||| |||||||| GATCAAAGAC ---------A -A-AAAT--T -AGACAGAAA -TGGTGTTGG CCAAGAAAGC 345 AAGGATTTTT TGCAAGTTTT GCTGAAACTG AAAGATGATG AAGCTGCCAA AATGCCTTTG 56442 || || |||| |||||||||| ||| || || |||||||| | || |||||| ||||||| || AAAGACTTTT TGCAAGTTTT GCTCAAGTTG AAAGATGAAG CAGATGCCAA AATGCCTCTG 405 ACCATGCCTG AACTCAAAGC CTTACTCATG GTATGTTTTT CTCAATTGTG CATGCTACTA 56502 |||||| ||| || ||||||| |||||| ||| ACCATGACTG AAATCAAAGC CTTACTTATG .......... .......... .......... 435 CAGGAAAAAT CCAGTATCCA GCTCTACTGG TAGTATGAAT TTTGTTATAC ATGATAATAA 56562 .......... .......... .......... .......... .......... .......... 435 CTTCACAAAT ACTGTGAACA GGATATGGTT GTCGGTGGAA CTGACACAAC CTCCAACACG 56622 ||| ||||| |||||||||| |||||||||| |||||| || .......... .......... .GATTTGGTT GTCGGTGGAA CTGACACAAC TTCCAACGCG 474 GTTGAGTTTG CCATGGCTGA AATTGTGAAC AAACCATACG TCCTGAGGAA ATTACAAGAA 56682 |||||||||| |||||||||| |||| ||||| |||||| | ||||||| || | ||||| || GTTGAGTTTG CCATGGCTGA AATTTTGAAC AAACCAGATA TCCTGAGAAA AATACAACAA 534 GAAG 56686 |||| GAAG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (56023 56472,56584 56686) ******************************************************************************** EST sequence 157 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 55058 to 60501): Exon 1 56055 56472 ( 418 n); cDNA 2 404 ( 403 n); score: 0.866 Intron 1 56473 56583 ( 111 n); Pd: 0.997 (s: 0.86), Pa: 0.999 (s: 0.86) Exon 2 56584 56651 ( 68 n); cDNA 405 472 ( 68 n); score: 0.868 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.866 486 1.030 C PGS_C08HBa0060C12.1+_SGN-E205363+ (56055 56472,56584 56651) Alignment (genomic DNA sequence = upper lines): AGGATTGCCT GTGAATATAG GTGAACAGAT GTTCTTGACT GTGCTTAATG TGATTACAAG 56114 ||||| |||| |||||| | | |||||||||| ||| |||||| | ||||||| |||||||||| AGGATCGCCT GTGAATGTTG GTGAACAGAT GTTTTTGACT GCACTTAATG TGATTACAAG 61 CATGTTATGG GGCGGCACAG TGAAGGGTGA GGAAAGATCC ACTCTTGGGG CAGAGTTTAG 56174 |||||||||| || ||||||| |||||||||| ||||||| | |||||||||| ||||| |||| CATGTTATGG GGTGGCACAG TGAAGGGTGA GGAAAGAGCT ACTCTTGGGG CAGAGGTTAG 121 GCATGTTGTC ACTAAGATGA CTGAACTGTT AGGTACTCCA AATCTTTCTG ATTTTTATCC 56234 | ||||||| |||||||||| ||| ||||| || ||||||| |||||||| | ||||||| || GGATGTTGTG ACTAAGATGA ATGAGCTGTT AGTTACTCCA AATCTTTCCG ATTTTTACCC 181 GGGCTTGGCC AGGTTTGATT TGCAGGGTGT TACAAAGAAG ATGAAAGTAT TGGCAAAGAG 56294 ||| |||||| ||||||||| |||||||||| || ||||||| |||||||| | |||||||||| GGGGTTGGCC TGGTTTGATT TGCAGGGTGT TAAAAAGAAG ATGAAAGTGT TGGCAAAGAG 241 ATTTGATAAG ATATTCGAGA GCATGATTGA TAAAAGACAG GATATTGATA GAAATGGTGG 56354 || |||||| ||||| |||| |||||||||| | |||||| | | | ||| | | ATATGATAAC ATATTTGAGA GCATGATTGA TCAAAGAC-- ---A---A-A -AAA---T-G 287 GATGGAAACT GGTGTTGGCC AAGAAAATAA GGATTTTTTG CAAGTTTTGC TGAAACTGAA 56414 || |||| | || ||||||| |||||| || ||| |||||| |||||||||| |||| |||| AATAGAAA-T GGGGTTGGCC AAGAAAGCAA GGACTTTTTG CAAGTTTTGC TGAAGTTGAA 346 AGATGATGAA GCTGCCAAAA TGCCTTTGAC CATGCCTGAA CTCAAAGCCT TACTCATGGT 56474 |||||| | | | | |||||| ||||| |||| |||| ||||| |||||||||| |||| | | AGATGAAGCA GATCCCAAAA TGCCTCTGAC CATGACTGAA CTCAAAGCCT TACTTACG.. 404 ATGTTTTTCT CAATTGTGCA TGCTACTACA GGAAAAATCC AGTATCCAGC TCTACTGGTA 56534 .......... .......... .......... .......... .......... .......... 404 GTATGAATTT TGTTATACAT GATAATAACT TCACAAATAC TGTGAACAGG ATATGGTTGT 56594 | |||||||||| .......... .......... .......... .......... .........G ATATGGTTGT 415 CGGTGGAACT GACACAACCT CCAACACGGT TGAGTTTGCC ATGGCTGAAA TTGTGAA 56651 ||||||||| || || | ||||||| || |||||||||| ||| |||||| || |||| TGGTGGAACT GAAACTAGTG CCAACACAGT TGAGTTTGCC ATGACTGAAA TTATGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (56055 56472,56584 56651) ******************************************************************************** EST sequence 322 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 52990 to 58659): Exon 1 56429 56472 ( 44 n); cDNA 1 44 ( 44 n); score: 0.909 Intron 1 56473 56583 ( 111 n); Pd: 0.997 (s: 0.91), Pa: 0.999 (s: 0.94) Exon 2 56584 57200 ( 617 n); cDNA 45 661 ( 617 n); score: 0.916 MATCH C08HBa0060C12.1+ SGN-E378974- 0.916 661 0.908 C PGS_C08HBa0060C12.1+_SGN-E378974- (56429 56472,56584 57200) Alignment (genomic DNA sequence = upper lines): CCAAAATGCC TTTGACCATG CCTGAACTCA AAGCCTTACT CATGGTATGT TTTTCTCAAT 56488 |||||||||| | |||||||| ||||| ||| |||||||||| ||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 TGTGCATGCT ACTACAGGAA AAATCCAGTA TCCAGCTCTA CTGGTAGTAT GAATTTTGTT 56548 .......... .......... .......... .......... .......... .......... 44 ATACATGATA ATAACTTCAC AAATACTGTG AACAGGATAT GGTTGTCGGT GGAACTGACA 56608 ||| | |||||||||| |||||||||| .......... .......... .......... .....GATTT GGTTGTCGGT GGAACTGACA 69 CAACCTCCAA CACGGTTGAG TTTGCCATGG CTGAAATTGT GAACAAACCA TACGTCCTGA 56668 |||| ||||| | |||||||| |||||||||| |||||||| | |||||||||| | |||||| CAACTTCCAA CGCGGTTGAG TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA 129 GGAAATTACA AGAAGAAGTA GATACAGTTG TGGGTAAAGA TAACATAGTA GAAGAGTCTC 56728 | ||| |||| | |||||||| |||||||||| |||| ||||| ||||||||| |||||||||| GAAAAATACA ACAAGAAGTA GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC 189 ATATTCAACA CTTACCATAT TTCTATGCAG TTATGAAAGA AGTCTTGCGT CTACATCCAG 56788 |||||||||| ||||||||| ||||||||| | |||||||| || | |||| ||||||||| ATATTCAACA GTTACCATAT CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG 249 CGCTTCCACT CTTGGTTCCT CATTGTCCTA GTGAGACGAG CACTGTTGGA GGATACACTG 56848 | || ||||| ||||| |||| |||||||||| ||||||| | ||||||||| |||||||||| CCCTCCCACT CTTGGCTCCT CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG 309 TTCCTAAAGG ATCTCGTGTT TTCATAAATG TATGGGCTAT ACAGCGAGAT CCTTCTATAT 56908 |||||||||| ||||||||| || |||||| |||||||||| ||| ||||| |||||||| | TTCCTAAAGG GTCTCGTGTT TTTGTAAATG TATGGGCTAT ACACAGAGAT CCTTCTATGT 369 GGGAAAATCC AACAGAGTTC CGTCCAGAGA GATTTTTGGA CAATAAGTGG GATTATAGTG 56968 || ||||||| |||||||||| ||||||||| |||||||||| ||||| ||| ||||||||| GGAAAAATCC AACAGAGTTC TGTCCAGAGA GATTTTTGGA TAATAAATGG AATTATAGTG 429 GAAATGATCT CAACTACTTC CCATTTGGTT CTGGCAGAAG AATCTGTGCG GGGATAGGCA 57028 |||||||| | |||||| ||| |||||||||| |||||||||| ||| |||||| ||||||| || GAAATGATTT CAACTATTTC CCATTTGGTT CTGGCAGAAG AATGTGTGCG GGGATAGCCA 489 TGGCAGAGAG GATGTTCATG TATTCACTGG CTTCACTCGT GCATTCTTTC GACTGGAAAT 57088 |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| || ||||||| TGGCAGAGAG GATGTTCATG TATTCACTGG CTTCACTCAT TCATTCTTTC GATTGGAAAT 549 TGCCTGAAGG AGAGACGTTA GACCTTACAG AGAAGTTTGG AATTGTTCTG AAGAAGAAAA 57148 |||||||||| |||||||||| ||||||| || |||||||| | |||| | || |||||||||| TGCCTGAAGG AGAGACGTTA GACCTTAAAG AGAAGTTTTG TATTGCTTTG AAGAAGAAAA 609 TGCCTCTGGT AGCTATACCT ACTCCAAGAT TATCCAATCC GACACTGTAT GA 57200 |||||||||| ||||||||| |||||||||| | |||||||| |||| |||| || TGCCTCTGGT GGCTATACCT ACTCCAAGAT TGTCCAATCC AACACAGTAT GA 661 hqPGS_C08HBa0060C12.1+_SGN-E378974- (56429 56472,56584 57200) ******************************************************************************** EST sequence 89 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 53347 to 58295): Exon 1 55495 56325 ( 831 n); cDNA 1 813 ( 813 n); score: 0.823 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.823 831 1.021 C PGS_C08HBa0060C12.1+_SGN-E553649+ (55495 56325) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACGTCTCTTT GATTTTTACT CATGTTCTTG GCAAGAATCA 55554 |||||||||| |||||||||| || || ||| |||| || | |||| | ||| || ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATATTGAGC AAAAGGGTGT ATTTTTCTCC TATATTCTTG GTATTGTAGC TTTACTATGG 55614 ||| |||||| || ||| | | |||||| | | | |||||| || || |||| |||||| ||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TTTCTTTGGC TTTTCATAAA CAAGTCAAAA AAGGGACAAC CCCAATTGCC ACCGGGACCT 55674 ||| || | ||| || | || || || || | |||| ||| || ||| TTT-TT---C --ATCAGTAA C---TCGAAC AAAGG----- -TC---TGCC ACCAGGGCCT 162 AAAGCTTTGC CTTTGATAGG TAATCTCCAT TCTCTTGATC CTCAACTTCA CACCTATTTT 55734 |||||||||| | |||||||| |||||||||| |||||||||| || ||||||| |||||||||| AAAGCTTTGC CCTTGATAGG TAATCTCCAT TCTCTTGATC CTGAACTTCA CACCTATTTT 222 GCATCTCTTT CCCAAACTTA TGGCCCCATT TATACACTCT GGCTTGGTAA AAAAGTTGGG 55794 |||||||| | |||||| ||| |||||||||| | || | ||| |||||||| | |||| ||||| GCATCTCTGT CCCAAATTTA TGGCCCCATT TGTAGAATCT GGCTTGGTCA AAAACTTGGG 282 ATTATTATTA CTTCGCCTGC CTTAGCTCGT GAGGTTCTTA AGGATCAAGA TACCATTTTC 55854 |||||||||| |||| || | |||||||| || ||||| | ||||| |||| || ||||| ATTATTATTA CTTCACCAGA ATTAGCTCGC GACGTTCTAA AGGATAAAGA TATTATTTTT 342 GCTAATAGAG ATGTGCCTGC TGCTGGTAGA GAAGCTACAT ATGGTGGCAC TGATATAGTT 55914 ||||| |||| | |||||||| ||||| | ||| | ||| ||||| ||| ||| ||| || GCTAACAGAG ACGTGCCTGC TGCTGCAGTA GAAATTTCAT ATGGTTGCAA TGACATACTT 402 TGGACTCCTT ATGGACCGAA ATGGCGCATG TTGAGAAAAG TTTGTGTTCG CGAAATGCTT 55974 |||| | ||| ||||||| | |||||| ||| ||||||| |||||||||| ||| |||||| TGGAATTCTT ATGGACCACA ATGGCGAATG ATGAGAAAGC TTTGTGTTCG CGATATGCTT 462 AGTGGTTCTA CTTTAGATTC TGTTTATGCA TTAAGGCGAC GGGAGCTTAG ACAAACGATC 56034 ||| |||||| |||||||||| ||||| |||| |||||||| |||||||||| |||| |||| AGTTGTTCTA CTTTAGATTC TGTTTGTGCA CTAAGGCGAA GGGAGCTTAG ACAATCGATG 522 AATTACTTCT ATAGTCAGGA AGGATTGCCT GTGAATATAG GTGAACAGAT GTTCTTGACT 56094 |||||||||| ||||| || | || || || ||||| | | |||| ||||| |||||||||| AATTACTTCT ATAGTAAGAA GGGTTTACCA GTGAACGTTG GTGAGCAGAT GTTCTTGACT 582 GTGCTTAATG TGATTACAAG CATGTTATGG GGCGGCACAG TGAAGGGTGA GGAAAGATCC 56154 ||| |||||| |||||||||| |||||||||| || |||||| |||||||||| ||||||| | GTGTTTAATG TGATTACAAG CATGTTATGG GGTAGCACAG TGAAGGGTGA GGAAAGAGCT 642 ACTCTTGGGG CAGAGTTTAG GCATGTTGTC ACTAAGATGA CTGAACTGTT AGGTACTCCA 56214 | |||||||| |||||||||| | ||||||| | | ||||| ||| |||| ||| ||| AATCTTGGGG CAGAGTTTAG GTATGTTGTG AGTGAGATGG CTGCGCTGTG CAGTATTCCC 702 AATCTTTCTG ATTTTTATCC GGGCTTGGCC AGGTTTGATT TGCAGGGTGT TACAAAGAAG 56274 |||||||| | |||| || || || |||||| ||||||||| | |||||||| |||||||||| AATCTTTCCG ATTTCTACCC AGGTTTGGCC TGGTTTGATT TCCAGGGTGT TACAAAGAAG 762 ATGAAAGTAT TGGCAAAGAG ATTTGATAAG ATATTCGAGA GCATGATTGA T 56325 ||||| | || |||||| |||||| ||| ||||| || | |||||||||| | ATGAAGCTGC TGTTAAAGAG ATTTGAGAAG ATATTTGATA GCATGATTGA T 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (55495 56325) ******************************************************************************** EST sequence 103 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 49748 to 58191): Exon 1 55501 56290 ( 790 n); cDNA 1 770 ( 770 n); score: 0.799 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.799 790 1.023 C PGS_C08HBa0060C12.1+_SGN-E554337+ (55501 56290) Alignment (genomic DNA sequence = upper lines): CTCAAATTCT -TCAAACG-- TCTCTTTGAT TTTTACTCAT -GTTCTTGGC AAGAATCAAA 55556 |||| ||||| ||||||| || ||||| | || | ||| | || | | || | || CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 60 TATTGAGCA- AAAGGGTGTA TTTTTCTCCT ATATTCTTGG TATTGTAGCT TTACTATGGT 55615 | |||| | |||| |||| ||||||||| | || |||| | || ||||| ||||| ||| TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGG- 119 TTCTTTGGCT TTTCATAAAC AAGTCAAAAA AGGGACAACC CCAATTGCCA CCGGGACCTA 55675 | | |||||| | || ||||| | |||| ||||||| || || |||| -----T-G-- TTTCATCAGT AACTCAAACA AGGG------ ---ATTGCCA CCAGGGCCTA 162 AAGCTTTGCC TTTGATAGGT AATCTCCATT CTCTTGATCC TCAACTTCAC ACCTATTTTG 55735 || ||||||| ||||||||| |||||| ||| ||||||| | | | | |||||||||| AACCTTTGCC CTTGATAGGT AATCTCTATT CTCTTGA--- T---C--C-C ACCTATTTTG 213 CATCTCTTTC CCAAACTTAT GGCCCCATTT ATACACTCTG GCTTGGTAAA AAAGTTGGGA 55795 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| |||||||||| CATCTCTTTC CCAAACTTAT GGCCCCATTT GTAGACTCTG GCTTGGTAAA AAAGTTGGGA 273 TTATTATTAC TTCGCCTGCC TTAGCTCGTG AGGTTCTTAA GGATCAAGAT ACCATTTTCG 55855 |||||||||| ||| ||| || |||||||||| |||||||||| |||| |||| |||||||| | TTATTATTAC TTCACCTACC TTAGCTCGTG AGGTTCTTAA GGATAAAGAC ACCATTTTTG 333 CTAATAGAGA TGTGCCTGCT GCTGGTAGAG AAGCTACATA TGGTGGCACT GATATAGTTT 55915 |||| ||||| ||| || ||| |||| | || || |||| |||||||| | ||| ||| CTAACAGAGA TGTCCCAGCT GCTGCAAAAG AATTATCATA TGGTGGCAAT AGCATACTTT 393 GGACTCCTTA TGGACCGAAA TGGCGCATGT TGAGAAAAGT TTGTGTTCGC GAAATGCTTA 55975 |||||||||| |||||||||| ||| | |||| |||| || || ||| |||||| | ||||||| GGACTCCTTA TGGACCGAAA TGGAGAATGT TGAGGAAGGT TTGCGTTCGC AATATGCTTA 453 GTGGTTCTAC TTTAGATTCT GTTTATGCAT TAAGGCGACG GGAGCTTAGA CAAACGATCA 56035 || |||||| |||||||||| ||||||||| ||||| | | |||||||||| ||| |||||| GTTATTCTAC TTTAGATTCT GTTTATGCAC TAAGGAAAAG GGAGCTTAGA CAATCGATCA 513 ATTACTTCTA TAGTCAGGAA GGATTGCCTG TGAATATAGG TGAACAGATG TTCTTGACTG 56095 |||||||||| |||||| | || || || | | ||| | || ||| |||||| ||||||| | ATTACTTCTA CAGTCAGAAG GGTTTACCAG TAAATGTTGG TGAGCAGATG TTCTTGAGTT 573 TGCTTAATGT GATTACAAGC ATGTTATGGG GCGGCACAGT GAAGGGTGAG GAAAGATCCA 56155 |||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||| | | CACTTAATGT GATTACAAGC ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA 633 CTCTTGGGGC AGAGTTTAGG CATGTTGTCA CTAAGATGAC TGAACTGTTA GGTACTCCAA 56215 ||||||| || ||||||||| ||| |||||| || | ||| | || ||| | ||| ||| | CTCTTGGAGC TGAGTTTAGG CATATTGTCA CTGAAATGGC TGCGCTGGTC AGTATTCCCA 693 ATCTTTCTGA TTTTTATCC- GGGCTTGGCC AGGTTTGATT TGCAGGGTGT TACAAAGAAG 56274 || ||| || |||||| || |||||||||| ||||||||| | || ||||| | |||| ||| ATTATTCCGA TTTTTACCCG GGGCTTGGCC TGGTTTGATT TCCAAGGTGT TGCAAAAAAG 753 ATGAAA-GTA TTGGCAA 56290 |||||| || ||||||| ATGAAAGGTG TTGGCAA 770 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (55501 56290) ******************************************************************************** EST sequence 131 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 55017 to 56901): Exon 1 55680 56165 ( 486 n); cDNA 1 486 ( 486 n); score: 0.897 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.897 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (55680 56165) Alignment (genomic DNA sequence = upper lines): TTTGCCTTTG ATAGGTAATC TCCATTCTCT TGATCCTCAA CTTCACACCT ATTTTGCATC 55739 |||||| ||| |||||||||| |||||||||| ||| |||||| |||||||||| |||| ||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTTTCCCAA ACTTATGGCC CCATTTATAC ACTCTGGCTT GGTAAAAAAG TTGGGATTAT 55799 ||||||| || | |||||||| |||||| || | |||||||| ||||||||| |||||||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TATTACTTCG CCTGCCTTAG CTCGTGAGGT TCTTAAGGAT CAAGATACCA TTTTCGCTAA 55859 | ||||||| |||||||||| |||| ||||| |||||||||| ||||||||| |||| ||||| TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 TAGAGATGTG CCTGCTGCTG GTAGAGAAGC TACATATGGT GGCACTGATA TAGTTTGGAC 55919 ||||||||| || ||||| ||||||||| |||||||||| || ||||| | |||||||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TCCTTATGGA CCGAAATGGC GCATGTTGAG AAAAGTTTGT GTTCGCGAAA TGCTTAGTGG 55979 |||||||||| || || |||| | |||||||| || |||||| |||| |||| |||||| || TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACTTTA GATTCTGTTT ATGCATTAAG GCGACGGGAG CTTAGACAAA CGATCAATTA 56039 |||||||||| ||| || ||| ||||| | || |||| ||||| ||||||||| |||| ||||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTCTATAGT CAGGAAGGAT TGCCTGTGAA TATAGGTGAA CAGATGTTCT TGACTGTGCT 56099 ||| |||| | ||| ||||| ||||||||| | | |||||| |||||||| | |||||| || CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATT ACAAGCATGT TATGGGGCGG CACAGTGAAG GGTGAGGAAA GATCCACTCT 56159 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| || | ||||| TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGGGC 56165 |||||| TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (55680 56165) ******************************************************************************** EST sequence 57 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 54936 to 61321): Exon 1 56706 57207 ( 502 n); cDNA 1 502 ( 502 n); score: 0.890 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.890 502 0.705 C PGS_C08HBa0060C12.1+_SGN-E551573+ (56706 57207) Alignment (genomic DNA sequence = upper lines): AGATAACATA GTAGAAGAGT CTCATATTCA ACACTTACCA TATTTCTATG CAGTTATGAA 56765 |||||| || |||||||||| |||||||||| || |||||| ||| |||||| |||| ||||| AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 60 AGAAGTCTTG CGTCTACATC CAGCGCTTCC ACTCTTGGTT CCTCATTGTC CTAGTGAGAC 56825 |||||| ||| || | |||| |||| ||| || ||||| || ||||||| | ||||| || AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 120 GAGCACTGTT GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 56885 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 180 TATACAGCGA GATCCTTCTA TATGGGAAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 56945 |||||| || |||||||||| | ||| ||| |||||||||| |||||||||| |||||||||| TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 240 GGACAATAAG TGGGATTATA GTGGAAATGA TCTCAACTAC TTCCCATTTG GTTCTGGCAG 57005 ||||||||| ||||||| || |||||||||| | ||||||| || ||||||| |||||||||| GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 300 AAGAATCTGT GCGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT 57065 |||||||||| | |||||||| |||||||||| |||||||||| |||||| ||| ||||||| || AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 360 CGTGCATTCT TTCGACTGGA AATTGCCTGA AGGAGAGACG TTAGACCTTA CAGAGAAGTT 57125 | | |||||| || || |||| |||||||||| ||||||||| |||||||| |||||| ||| CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 420 TGGAATTGTT CTGAAGAAGA AAATGCCTCT GGTAGCTATA CCTACTCCAA GATTATCCAA 57185 || ||| | ||| ||||| |||| ||||| ||| ||||| |||||||||| |||| ||||| TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 480 TCCGACACTG TATGAGTAAG AT 57207 ||| ||||| |||||||||| || TCCAACACTC TATGAGTAAG AT 502 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (56706 57207) ******************************************************************************** EST sequence 288 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 53248 to 58200): Exon 1 56900 57159 ( 260 n); cDNA 1 261 ( 261 n); score: 0.952 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.952 260 0.718 C PGS_C08HBa0060C12.1+_SGN-E234103- (56900 57159) Alignment (genomic DNA sequence = upper lines): CTTCTATATG GGAAAATCCA ACAGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 56959 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATTATAGTGG AAATGATCTC AACTACTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 57019 |||||||||| ||||||| || ||||| |||| |||||||||| |||||||||| |||||||||| ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGGCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 57079 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTACAGA GAAGTTTGGA ATTGTTCTGA 57139 |||||||||| |||||||||| ||||| |||| |||| ||||| ||||||||| |||||||||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAGAAAAT G-CCTCTGGT A 57159 ||||||| || | | | |||| | AGAAGAAGAT GTCTTATGGT A 261 hqPGS_C08HBa0060C12.1+_SGN-E234103- (56900 57159) ******************************************************************************** EST sequence 298 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 53268 to 57858): Exon 1 56903 57159 ( 257 n); cDNA 1 259 ( 259 n); score: 0.938 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.938 257 0.714 C PGS_C08HBa0060C12.1+_SGN-E234174- (56903 57159) Alignment (genomic DNA sequence = upper lines): CTATATGGGA AAATCCAACA GA-GTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 56961 |||||||||| |||||| || || ||||||| |||||||||| |||||||||| |||||||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TATAGTGGAA ATGATCTCAA CTACTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 57021 |||||||||| ||||| |||| ||| |||||| |||||||||| |||||||||| |||||||||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 57081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CTGAAGGAGA GACGTTAGAC CTTACAGAGA AGTTTGGAAT TGTTCTGAAG 57141 |||||||||| |||||||||| ||| |||| | || ||||||| ||||||| || |||||||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATG- CCTCTGGTA 57159 ||||| ||| | | ||||| AAGAAGATGT CTTATGGTA 259 hqPGS_C08HBa0060C12.1+_SGN-E234174- (56903 57159) ******************************************************************************** EST sequence 205 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 55532 to 61698): Exon 1 56908 57200 ( 293 n); cDNA 3 295 ( 293 n); score: 0.898 Intron 1 57201 58336 (1136 n); Pd: 0.284 (s: 0.94), Pa: 0.307 (s: 0) Exon 2 58337 58360 ( 24 n); cDNA 296 316 ( 21 n); score: 0.583 Intron 2 58361 59121 ( 761 n); Pd: 0.892 (s: 0), Pa: 0.768 (s: 0) Exon 3 59122 59127 ( 6 n); cDNA 317 322 ( 6 n); score: 0.833 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.898 323 0.480 C PGS_C08HBa0060C12.1+_SGN-E320419+ (56908 57200,58337 58360,59122 59127) Alignment (genomic DNA sequence = upper lines): TGGGAAAATC CAACAGAGTT CCGTCCAGAG AGATTTTTGG ACAATAAGTG GGATTATAGT 56967 |||||||||| |||| ||||| || ||| || |||||| ||| | ||||| || ||| | ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGAAATGATC TCAACTACTT CCCATTTGGT TCTGGCAGAA GAATCTGTGC GGGGATAGGC 57027 ||||||||| | | |||||| ||| |||||| |||||||||| ||||||||| |||| ||| | GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCG TGCATTCTTT CGACTGGAAA 57087 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| ||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 TTGCCTGAAG GAGAGACGTT AGACCTTACA GAGAAGTTTG GAATTGTTCT GAAGAAGAAA 57147 |||||||||| ||||||| || |||| ||||| |||||||||| | ||||| |||||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATGCCTCTGG TAGCTATACC TACTCCAAGA TTATCCAATC CGACACTGTA TGAGTAAGAT 57207 |||||||||| | |||||||| |||||||||| |||||||||| | ||||| || ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA....... 295 ATGTCTGTAG AGAGACGCTT TCTGCATGAC GAATTTATCT TTTGTATGAT GAACTATGGA 57267 .......... .......... .......... .......... .......... .......... 295 TATGTGCTTC ATGAAAATAG GATCTACTTG AAATGGATTG GAAGTTTTCT GTATAGTTTG 57327 .......... .......... .......... .......... .......... .......... 295 TAAACATCAT GAATAAATAT AAGAAGGGTG TTTTCCTTGT TCTCTTGACA ATATTTGCTT 57387 .......... .......... .......... .......... .......... .......... 295 GAAAAAAAGG GTGTTTACCA AATTTATTAA ATCATCATAT CATCGTATCA TATACTCCCT 57447 .......... .......... .......... .......... .......... .......... 295 CCCAATCAAA AAGGATGACC TAATTTGATT TGTAACGGAG TTTAAGAATA GAAAGAAATT 57507 .......... .......... .......... .......... .......... .......... 295 TTTTAATCTT GTGGTTCTAT ATTAAAGTTA TGTCAAATGT ACCAAAATGT CCTTTAATCT 57567 .......... .......... .......... .......... .......... .......... 295 TGTGGTCTTA AACATGCCAC GTGGATAGTT AAAGTTAAAG TGATGCCAAA AAAGGAAATG 57627 .......... .......... .......... .......... .......... .......... 295 AGTCATTTTT TTTTAAAAGA CTAAAGAGGA AATACGGTCA TTCTTTTTTA AACGGAGGGA 57687 .......... .......... .......... .......... .......... .......... 295 ATATATCATT ATAAGTTGGA AGCTCCTAAA TTAAAAGTTG AATTACCATT TTACCCTTAT 57747 .......... .......... .......... .......... .......... .......... 295 TTTATTTCTA GACTAATTTA AATATTAATA TATAATTAAT TTAACATTAA AATAATCATA 57807 .......... .......... .......... .......... .......... .......... 295 TTTAAATACA TGCATCTAGA CACAATGGTT CAAATTCTAA TTATTTAAAT AGTACGTAAT 57867 .......... .......... .......... .......... .......... .......... 295 AAGTAATAAT TATATTATAT TATACTAAAT ACCAAAAATA AGAAGGTATA AAGTCAAACT 57927 .......... .......... .......... .......... .......... .......... 295 TTGAATACAA AAATATTTAA TAGAAAATTG TTAGAAATTA TTTCATAGAA AATTGTTAGG 57987 .......... .......... .......... .......... .......... .......... 295 AATTACCTTC TTATAACAAA AGTCCTCTAT TCTTTCTCTA TAATTAGTGT GGTTAAATGG 58047 .......... .......... .......... .......... .......... .......... 295 ATTGAATTTG TTATCCTTTC TATGTAATAA GTATAATTAA ATGTATTGAA TTATTAGTAA 58107 .......... .......... .......... .......... .......... .......... 295 AAACAATCAA CATTTCCTCT CCCCCATGTC TAAGATCACT AACTTCTCAA AATAAACTTA 58167 .......... .......... .......... .......... .......... .......... 295 AACAATTCTT CACCTTTTCA TCTTATTTTA TAAATCTTTA GCTATATGTA TGTATCATGA 58227 .......... .......... .......... .......... .......... .......... 295 AAAAATATTT TTTTTCTTTA TCACTTGCTT CTTGTTTATA TGAATCATTA GGCAATTTTC 58287 .......... .......... .......... .......... .......... .......... 295 ATGTACTTTT TTTTGTTTTA AATATTAATA TTTGTTTGAT CCTAATTAGA ATGATATTTT 58347 | | | .......... .......... .......... .......... .........G A-CAGACAAG 305 GTATCATAAG AAGGTATCAT CAAGAACTCT ACTCTTTATG TAATTCTTTT TACGATATAT 58407 |||||| || ||| GTATCA-AA- AAG....... .......... .......... .......... .......... 316 ATTGTTATAA TTAAAGTCTT AAGAAAGATA TGAATGTTGT ATTTGTTCTT ATCTGTTTAA 58467 .......... .......... .......... .......... .......... .......... 316 TTTTTTTTAT TCTTTACCGA TTTATACTTA TTTAATTTAA TCTACTATGA AATTATGAAT 58527 .......... .......... .......... .......... .......... .......... 316 ATTATAAGTC TATTTTTATT AGTGCTAAAT TACTAATTTA TGACTTTTAT ATTCATTTTT 58587 .......... .......... .......... .......... .......... .......... 316 AAATGTACTT TTATAATATG TTTTTTATTT TATCCTTTCC TTATTGATAT AGTTTCTTTA 58647 .......... .......... .......... .......... .......... .......... 316 AATAGATACA TAGTTGTGTA AACTATATGA AGGATAATGA GAGATTATTA AGGATTAGTC 58707 .......... .......... .......... .......... .......... .......... 316 ATATAGATAT ATTCATATTA CTAGATGCTA TAATAATATT ATTATTTTCT CATATTTCTT 58767 .......... .......... .......... .......... .......... .......... 316 GCTTGATGGT CAATGTAATA TTCGATTATT ATGAATTTTA TTTAATGAAT AAAATATAAA 58827 .......... .......... .......... .......... .......... .......... 316 TTGATAAAAC TAATATTTTA AGTTCAATAT TTTTTAAGAA TAATTCAACT TTATAATAAT 58887 .......... .......... .......... .......... .......... .......... 316 TGTATCTGCA ACGCACGTTC AGGAAACTAA GTAGAAAAAA GTATACGTAA AGGACAGATT 58947 .......... .......... .......... .......... .......... .......... 316 AGTTAAATTA TATACTTTTG TATTAGTTTA AAAAAATCTC TAATTGAAAA AAACAAATTG 59007 .......... .......... .......... .......... .......... .......... 316 GAACCAATAG TTGTTTCATG GGTTCTCTCC TTTGAAGTTT GAAGCAGCAT TAGGATTGAG 59067 .......... .......... .......... .......... .......... .......... 316 AAGGTATGTT CATATTGTGG TTTTGCTTAC TTCCTTTTTA TATTACTACT ATAGAGAAGA 59127 ||||| .......... .......... .......... .......... .......... ....TGAAGA 322 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (56908 57200) ******************************************************************************** EST sequence 142 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 56197 to 58319): Exon 1 56968 57200 ( 233 n); cDNA 1 233 ( 233 n); score: 0.910 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.910 233 0.879 C PGS_C08HBa0060C12.1+_SGN-E243190+ (56968 57200) Alignment (genomic DNA sequence = upper lines): GGAAATGATC TCAACTACTT CCCATTTGGT TCTGGCAGAA GAATCTGTGC GGGGATAGGC 57027 ||||||||| ||||||| | |||||||||| ||||| |||| || | || || |||||||||| GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCG TGCATTCTTT CGACTGGAAA 57087 |||||||||| |||||||||| ||||||||| ||||| ||| | |||||||| |||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCTGAAG GAGAGACGTT AGACCTTACA GAGAAGTTTG GAATTGTTCT GAAGAAGAAA 57147 ||||| |||| |||||||||| |||||| ||| |||||||||| | |||||||| |||||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATGCCTCTGG TAGCTATACC TACTCCAAGA TTATCCAATC CGACACTGTA TGA 57200 |||||||||| | |||||||| |||||||||| || || ||| | | ||| || ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (56968 57200) ******************************************************************************** EST sequence 166 +strand 580 n (File: SGN-E318957+) 1 AAGGGATGGT TTTTGGAGAG AATTTTTTTT TTTTACATCT TGTGATAGAA AAGAATTATT 61 GAAAGAGTTT AGTCATAAGA AGATTTTACA ATAGTTTAAG CACACCTATA TATCTATTGA 121 AGTTGAATTA AAAACAAAAG GATTGCGGGG TTTTTGATTA TCATTTGAAC TCGAAGTTGT 181 GTAGTGGAAG GTCATCCCCT TGCTCGTTTC GTCTCCAGCT CGCTGCCCCG AAGAAGTTGA 241 GTTTTAGGCT GAATTGTCTT GGCAAGATAA GACGAGTGCC ATCAAGTCCA TTTTTGGTTC 301 GTGACATCCG TTTGTATATT TTGTTTGCAA ATATACAAAC AAGGTAAGTA TATACAAATT 361 CTGCATTTAT ACATATAAGA AATTTTCAGA ACTATTGTGC TTGTCAATAT ACAAACATAG 421 TAATTTATTA CTCCCTTCGT TTCAAAAGGA TGACCTAGTT TGACTTGGAA CAGAGTGTAA 481 GAAAAGAAAG AAAACTCTAA TCTTGTGGTT CTAAATTAAA GTTATGTCAA ATGTACCAAA 541 ATGCTCTTTA ATCTTGTGGT CTTAAATATG ACACGTGGAA Predicted gene structure (within gDNA segment 51941 to 58329): Exon 1 53008 53034 ( 27 n); cDNA 316 342 ( 27 n); score: 0.630 Intron 1 53035 54075 (1041 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 2 54076 54081 ( 6 n); cDNA 343 348 ( 6 n); score: 0.667 Intron 2 54082 54782 ( 701 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 54783 54811 ( 29 n); cDNA 349 378 ( 30 n); score: 0.603 Intron 3 54812 56505 (1694 n); Pd: 0.799 (s: 0), Pa: 0.530 (s: 0) Exon 4 56506 56534 ( 29 n); cDNA 379 405 ( 27 n); score: 0.586 Intron 4 56535 56583 ( 49 n); Pd: 0.161 (s: 0), Pa: 0.999 (s: 0) Exon 5 56584 56589 ( 6 n); cDNA 406 411 ( 6 n); score: 0.667 Intron 5 56590 57422 ( 833 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.70) Exon 6 57423 57592 ( 170 n); cDNA 412 579 ( 168 n); score: 0.832 PPA cDNA 34 22 MATCH C08HBa0060C12.1+ SGN-E318957+ 0.832 267 0.460 C PGS_C08HBa0060C12.1+_SGN-E318957+ (53008 53034,54076 54081,54783 54811,56506 56534,56584 56589,57423 57592) Alignment (genomic DNA sequence = upper lines): ATGGTTTCTT TGGCTTTTCA CTAACAAGTC AAAAAAGGGA CAACCCCCGT TGCCACCGGG 53067 || ||| || || | | | ||||| ATATTTTGTT TGCAAATATA CAAACAA... .......... .......... .......... 342 GCCTAAAGCT TTACCTTTAC TAGGTAATCT CCATTCTGTT GAACCTCAAC TTCGCACCTA 53127 .......... .......... .......... .......... .......... .......... 342 TTTTGCTTCT CTTTCCCAAA CTTATGGCCC CATTTGTAGA CTCTGGCTTG GTATAAAACT 53187 .......... .......... .......... .......... .......... .......... 342 TGGCATTATT ATTACTTCGC CTGCCTTAGC TCGCGAAGTT CTTAAGGAAC AAGATACCAT 53247 .......... .......... .......... .......... .......... .......... 342 ATTTGCTTAC AGAGATGTGC CTGCTGCTGG AAGAGAAATG TCATATGGCG GTTTGGAATC 53307 .......... .......... .......... .......... .......... .......... 342 CTTTTGGACC GAAATGGCGT ATGTTGAGAA CTGTTTGTGT TCGTGATATG CTTGGTGGTT 53367 .......... .......... .......... .......... .......... .......... 342 CTGCTTTAGA TTCTGTTTAT GCACTAAGGA AAAAGGAGCT TAGACAGAAT CAATTACTTC 53427 .......... .......... .......... .......... .......... .......... 342 TATAGTCAGG CCGGATTGCC TGTGAATGTT GGTGAAAAGA TGTTCTTGAC TATGTTTAAC 53487 .......... .......... .......... .......... .......... .......... 342 GTGATTACAA GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TAATCTTGGG 53547 .......... .......... .......... .......... .......... .......... 342 GCAGAGTTTA GGCATGTTGT GTATGGAATA CTGAGCTGTT AGGTACTCCA AATGTTTCCG 53607 .......... .......... .......... .......... .......... .......... 342 ATTTGCTTGG ACTGGTTCGA TTTGCAGGGT GTTACAAAGA AGATGAAAGT GTTGGCAAAG 53667 .......... .......... .......... .......... .......... .......... 342 AGATTTGATA CGATATTTGA GAGCATGATT GATCAAAGAC AGAAAATGGA TGGAAATACT 53727 .......... .......... .......... .......... .......... .......... 342 GAGATGGGAG CTGGTGTTGG TCAAGAAAGC AAGGACTTTT TGCAAGTTTT GCTGAAGTTG 53787 .......... .......... .......... .......... .......... .......... 342 AAAGATGAAG CAGATTCCAA AATGCCTCTG TCTATGACTG AACTCAAAGC CTTACTTATG 53847 .......... .......... .......... .......... .......... .......... 342 GTATGTTTTA TCGGTGCGCA TTTTGATTGT TTCCATTAGA TGTCTGAACT GTTGTTTGCT 53907 .......... .......... .......... .......... .......... .......... 342 AACTTGTTAT TGGACTGTAC TAAGAAAAGA GTCATTTAGC ATCAAATATT ATGTAAAGCT 53967 .......... .......... .......... .......... .......... .......... 342 TAATTCAGAC TTAATTGAGA ACCTTGAACT GAACACCTAT ATATATGTAC AGTTCTACAA 54027 .......... .......... .......... .......... .......... .......... 342 ATTAAAAAAT GTTGTACATG ATAATAACTT CACAAATACT GTGAACAGGA TATGGTTGTC 54087 | || | .......... .......... .......... .......... ........GG TAAG...... 348 GGTGGAACTG CTACGACCTC CAACACGGTT GAGTTTGCCA TGGCTGAAAT TATGAACAAA 54147 .......... .......... .......... .......... .......... .......... 348 CGAGATATCC TGAGAAAATT ACAAGAAGTA GATACAGTCG TGGGAAAAGA TAACATAGTG 54207 .......... .......... .......... .......... .......... .......... 348 GAAGAGTCTC ATATTCAACA GTTACCATAT TTCTATGCAG TTATGAAAGA AGTCTTGCGC 54267 .......... .......... .......... .......... .......... .......... 348 CTACATCCAG TACTTCCACT TTTGGTTCCT CATTTTCCTA GTGAGGCAGG TATTGTTGGA 54327 .......... .......... .......... .......... .......... .......... 348 GGATACACTG TTCCTAAAGG ATCTTGTGTT TTCGTAAACG TATGGGCTAT TCACAGAGAT 54387 .......... .......... .......... .......... .......... .......... 348 CCTTCTATAT GTGAAAATCC AACTGAGTTC CATCCAGAAA AATTTTTGGA CAATAAATGT 54447 .......... .......... .......... .......... .......... .......... 348 GATTATAGTG GAAATGATTT GAACTATTTC CCATTTGGTT CTGGCAGAAG AATGTGTGCG 54507 .......... .......... .......... .......... .......... .......... 348 GGGATAGCCA TGGCAGAGAG GATGTTCATG TTTTTACTGG CATCACTCAT TCATTCTTTC 54567 .......... .......... .......... .......... .......... .......... 348 AACTGGACAA TGTCTGAAGG GGAGAATTTA GACCTTACAG AGATGTTTGG GATTGTTCTG 54627 .......... .......... .......... .......... .......... .......... 348 AAGAAGAAAA TGCCTCTGGT GGCTATCCCA ACTCCAAGAT TATCCAATCC AACACTCTAT 54687 .......... .......... .......... .......... .......... .......... 348 GAGTAATATT AAAATGTGTC TGTAGAGTGT TGTATTCCGC ATGATGATTC TGTCTTTTGT 54747 .......... .......... .......... .......... .......... .......... 348 GCTCTATGAA AATTGATTCA AAGTTTTCTA TAAAGTTTGT ACACATCAAG AATAAATACA 54807 | | | ||| || | || ||||| .......... .......... .......... .....TATAT ACAAATTCTG CATTTATACA 373 TA-AAGTATG TTTTCTTAGG TCTCTTGACA ATATTTTCTT GAGTTTACAA AATTAATTAA 54866 || || TATAA..... .......... .......... .......... .......... .......... 378 ACAAAAACAT ATTATAAAGG TCAAATTAAA GTTGTCATGA ATTCATATCT TGATTCATAA 54926 .......... .......... .......... .......... .......... .......... 378 GAAAGCATAG AGAGTGTGCA AGAAGGCTCA AGACCCTTTT AGACTCGAGA AGGACCACAT 54986 .......... .......... .......... .......... .......... .......... 378 TCCAACATTC AAGGAAAGAT GTTTATAAAA TTCAATTAAA CAAAATAGTC AAAGTGTATT 55046 .......... .......... .......... .......... .......... .......... 378 ATGGTATAAA AGGTTACAAG GATTATTATA GAGTTGCGGG AATAAAGAAG ATCAAGTGAA 55106 .......... .......... .......... .......... .......... .......... 378 ATTAGTATTA CAAAGCAAAA CCTTAAGCAA AGGTGTGTGA AATTTTTCCT AAAAGAAAGT 55166 .......... .......... .......... .......... .......... .......... 378 AAATAAAAAG GATCTTAAAG AGCATATTTC TATTGGCAAG AAGACAATAT ATATCTAATT 55226 .......... .......... .......... .......... .......... .......... 378 ATATATTATC TCTTAATCTG TCTTGTGCAC AGGAAGATGC ACCAGTTCTA GCTGGAAGGT 55286 .......... .......... .......... .......... .......... .......... 378 ATCAACATCT GAAGATTCAT TTGCACTACC CAACAAAGGT CATTGACTTC TTCACTTATT 55346 .......... .......... .......... .......... .......... .......... 378 TGAATACCCA AGGTACAGAT ATATTAATTT ATTGCTGATA GTTTTGAAAG AATCATATAT 55406 .......... .......... .......... .......... .......... .......... 378 CTGCCGAATA CTCATTCATT TATCAAGTGG TGTTAGCTTC CCACAACATT GGTTCTGCCA 55466 .......... .......... .......... .......... .......... .......... 378 ATTTCCATAT CCCTCTTAGG CTCAAATAAT GTCTCTCAAA TTCTTCAAAC GTCTCTTTGA 55526 .......... .......... .......... .......... .......... .......... 378 TTTTTACTCA TGTTCTTGGC AAGAATCAAA TATTGAGCAA AAGGGTGTAT TTTTCTCCTA 55586 .......... .......... .......... .......... .......... .......... 378 TATTCTTGGT ATTGTAGCTT TACTATGGTT TCTTTGGCTT TTCATAAACA AGTCAAAAAA 55646 .......... .......... .......... .......... .......... .......... 378 GGGACAACCC CAATTGCCAC CGGGACCTAA AGCTTTGCCT TTGATAGGTA ATCTCCATTC 55706 .......... .......... .......... .......... .......... .......... 378 TCTTGATCCT CAACTTCACA CCTATTTTGC ATCTCTTTCC CAAACTTATG GCCCCATTTA 55766 .......... .......... .......... .......... .......... .......... 378 TACACTCTGG CTTGGTAAAA AAGTTGGGAT TATTATTACT TCGCCTGCCT TAGCTCGTGA 55826 .......... .......... .......... .......... .......... .......... 378 GGTTCTTAAG GATCAAGATA CCATTTTCGC TAATAGAGAT GTGCCTGCTG CTGGTAGAGA 55886 .......... .......... .......... .......... .......... .......... 378 AGCTACATAT GGTGGCACTG ATATAGTTTG GACTCCTTAT GGACCGAAAT GGCGCATGTT 55946 .......... .......... .......... .......... .......... .......... 378 GAGAAAAGTT TGTGTTCGCG AAATGCTTAG TGGTTCTACT TTAGATTCTG TTTATGCATT 56006 .......... .......... .......... .......... .......... .......... 378 AAGGCGACGG GAGCTTAGAC AAACGATCAA TTACTTCTAT AGTCAGGAAG GATTGCCTGT 56066 .......... .......... .......... .......... .......... .......... 378 GAATATAGGT GAACAGATGT TCTTGACTGT GCTTAATGTG ATTACAAGCA TGTTATGGGG 56126 .......... .......... .......... .......... .......... .......... 378 CGGCACAGTG AAGGGTGAGG AAAGATCCAC TCTTGGGGCA GAGTTTAGGC ATGTTGTCAC 56186 .......... .......... .......... .......... .......... .......... 378 TAAGATGACT GAACTGTTAG GTACTCCAAA TCTTTCTGAT TTTTATCCGG GCTTGGCCAG 56246 .......... .......... .......... .......... .......... .......... 378 GTTTGATTTG CAGGGTGTTA CAAAGAAGAT GAAAGTATTG GCAAAGAGAT TTGATAAGAT 56306 .......... .......... .......... .......... .......... .......... 378 ATTCGAGAGC ATGATTGATA AAAGACAGGA TATTGATAGA AATGGTGGGA TGGAAACTGG 56366 .......... .......... .......... .......... .......... .......... 378 TGTTGGCCAA GAAAATAAGG ATTTTTTGCA AGTTTTGCTG AAACTGAAAG ATGATGAAGC 56426 .......... .......... .......... .......... .......... .......... 378 TGCCAAAATG CCTTTGACCA TGCCTGAACT CAAAGCCTTA CTCATGGTAT GTTTTTCTCA 56486 .......... .......... .......... .......... .......... .......... 378 ATTGTGCATG CTACTACAGG AAAAATCCAG TATCCAGCTC TACTGGTAGT ATGAATTTTG 56546 | ||| | ||| | | | | | || || .......... .........G AAATTTTCAG -AACTA-TTG TGCTTGTC.. .......... 405 TTATACATGA TAATAACTTC ACAAATACTG TGAACAGGAT ATGGTTGTCG GTGGAACTGA 56606 || || .......... .......... .......... .......AAT ATA....... .......... 411 CACAACCTCC AACACGGTTG AGTTTGCCAT GGCTGAAATT GTGAACAAAC CATACGTCCT 56666 .......... .......... .......... .......... .......... .......... 411 GAGGAAATTA CAAGAAGAAG TAGATACAGT TGTGGGTAAA GATAACATAG TAGAAGAGTC 56726 .......... .......... .......... .......... .......... .......... 411 TCATATTCAA CACTTACCAT ATTTCTATGC AGTTATGAAA GAAGTCTTGC GTCTACATCC 56786 .......... .......... .......... .......... .......... .......... 411 AGCGCTTCCA CTCTTGGTTC CTCATTGTCC TAGTGAGACG AGCACTGTTG GAGGATACAC 56846 .......... .......... .......... .......... .......... .......... 411 TGTTCCTAAA GGATCTCGTG TTTTCATAAA TGTATGGGCT ATACAGCGAG ATCCTTCTAT 56906 .......... .......... .......... .......... .......... .......... 411 ATGGGAAAAT CCAACAGAGT TCCGTCCAGA GAGATTTTTG GACAATAAGT GGGATTATAG 56966 .......... .......... .......... .......... .......... .......... 411 TGGAAATGAT CTCAACTACT TCCCATTTGG TTCTGGCAGA AGAATCTGTG CGGGGATAGG 57026 .......... .......... .......... .......... .......... .......... 411 CATGGCAGAG AGGATGTTCA TGTATTCACT GGCTTCACTC GTGCATTCTT TCGACTGGAA 57086 .......... .......... .......... .......... .......... .......... 411 ATTGCCTGAA GGAGAGACGT TAGACCTTAC AGAGAAGTTT GGAATTGTTC TGAAGAAGAA 57146 .......... .......... .......... .......... .......... .......... 411 AATGCCTCTG GTAGCTATAC CTACTCCAAG ATTATCCAAT CCGACACTGT ATGAGTAAGA 57206 .......... .......... .......... .......... .......... .......... 411 TATGTCTGTA GAGAGACGCT TTCTGCATGA CGAATTTATC TTTTGTATGA TGAACTATGG 57266 .......... .......... .......... .......... .......... .......... 411 ATATGTGCTT CATGAAAATA GGATCTACTT GAAATGGATT GGAAGTTTTC TGTATAGTTT 57326 .......... .......... .......... .......... .......... .......... 411 GTAAACATCA TGAATAAATA TAAGAAGGGT GTTTTCCTTG TTCTCTTGAC AATATTTGCT 57386 .......... .......... .......... .......... .......... .......... 411 TGAAAAAAAG GGTGTTTACC AAATTTATTA AATCATCATA TCATCGTATC ATA-TACTCC 57445 || | ||| ||| || |||||| .......... .......... .......... ......CA-A ACATAGTAAT TTATTACTCC 434 CTCCCAATCA AAAAGGATGA CCTAATTTGA TTTGTAACGG AGTTTAAGAA TAGAAAGAAA 57505 || | || |||||||||| |||| ||||| ||| ||| | ||| |||||| ||||||||| CTTCGTTTC- AAAAGGATGA CCTAGTTTGA CTTGGAACAG AGTGTAAGAA AAGAAAGAAA 493 TTTTTTAATC TTGTGGTTCT ATATTAAAGT TATGTCAAAT GTACCAAAAT GTCCTTTAAT 57565 | ||||| |||||||||| | |||||||| |||||||||| |||||||||| | ||||||| -ACTCTAATC TTGTGGTTCT AAATTAAAGT TATGTCAAAT GTACCAAAAT GCTCTTTAAT 552 CTTGTGGTCT TAAACATGCC ACGTGGA 57592 |||||||||| |||| ||| | ||||||| CTTGTGGTCT TAAATATGAC ACGTGGA 579 hqPGS_C08HBa0060C12.1+_SGN-E318957+ (57423 57592) ******************************************************************************** EST sequence 410 -strand 736 n (File: SGN-E547025-) 1 CAAAGTGAAT CAAATTTTCG TCCTAAATTT TAGTTGTTTT CCTTTTTTTT TCCTATTTCA 61 ACAATTGTAT ATGTATTGTG TTTCTTATGT TTTTTCATAT TTTTTTGATG AAATAATCGA 121 TTGTTTGTTC TTATTAGATC TCAAATTAGT CACAGAATGA ATGAATCATC TTCATCTATG 181 AGGATTATCA CAGGGTCTAT GGTAAAATCA AAACAAGTTC AACATGAACA AACAATGGAA 241 GAATTGAGAT CAAAGAAAAA AATATGACCC TACGGCAGTT CAAGAAGTTA TTAACAATGC 301 TAAATCTAGA GGCATTAAAA TTGTACAAGG AGGAAGAAAG AGGAAAGCAA CATTGATTCA 361 GAGGAAAATG CATGTGAAGT TGACGGATCT GAAGAACATC ATAATTATGA GGTAGTGGCT 421 TAAAACACAA ATTTAGATAC AATTTTTTTG TTACTTAGAT GTCAATATAC AAAAAATTAT 481 TGTTTAAGTA AATTTTGTAT TCACGTAATT GTATATAGTA TATTGCATGT TTAGTACACA 541 CAAGTTTTAG TTATATATTT GTATATGTGT CTGAGGATTT GATTACTTTA TACATACTTT 601 AAGTTATGTA TAATGAATAA TATACTAAGT CTTAATAGTG GTAGTAGCAG CATTGTATAT 661 TAAAGGCTCA TTATTATTTT TGTTTTTGTA TATATATACA AAAAGTAATT GGACTTAGTT 721 ATACAAAAAA AAAAAA Predicted gene structure (within gDNA segment 56201 to 62481): Exon 1 60496 60684 ( 189 n); cDNA 3 193 ( 191 n); score: 0.746 Intron 1 60685 60765 ( 81 n); Pd: 0.000 (s: 0.82), Pa: 0.950 (s: 0.80) Exon 2 60766 61142 ( 377 n); cDNA 194 558 ( 365 n); score: 0.796 PPA cDNA 725 736 MATCH C08HBa0060C12.1+ SGN-E547025- 0.779 566 0.769 C PGS_C08HBa0060C12.1+_SGN-E547025- (60496 60684,60766 61142) Alignment (genomic DNA sequence = upper lines): AAGTCAATTT CGTAAGTTAT CCTTAATTTT AGTTGTTTAC CTTTTTTTCT AACTTATCTA 60555 |||| ||| | | | ||| |||||| |||||||| | |||||||| | || | | AAGTGAATCA AAT-TTTCGT CCTAAATTTT AGTTGTTTTC CTTTTTTTTT -CCTATTTCA 60 AAAATTGTAT ATGTGTTTTG TTT-TT-T-T TTCTTCATAT ATTTT-GATG AAATAATCGT 60611 | |||||||| |||| || || ||| || | | || ||||||| |||| |||| ||||||||| ACAATTGTAT ATGTATTGTG TTTCTTATGT TTTTTCATAT TTTTTTGATG AAATAATCGA 120 TTTTTTGTTC TTGATAGATC TAAAATTCGT CAAACAATGA ACGAATCGTC TACATCTTTG 60671 || ||||||| || |||||| | ||||| || || | ||||| | ||||| || | ||||| || TTGTTTGTTC TTATTAGATC TCAAATTAGT CACAGAATGA ATGAATCATC TTCATCTATG 180 AGGATTACCA GAGGTAGTCC TTTGCATGTC AATGTTGTTG ACATTTTACC ATCCTTTTCA 60731 ||||||| || || AGGATTATCA CAG....... .......... .......... .......... .......... 193 ATGGGACTAA CTCAAGAATT TGGGGTTAAT GTAGGGTATT TGGGAAAATC AAAATAACTT 60791 ||| | ||| |||||| |||| || || .......... .......... .......... ....GGTCTA TGGTAAAATC AAAACAAGTT 219 ATACAAGAAC AAACCATGGA AGAGCTGAAA TCAAAGAAAA AAA-ACGACC CTATGGCAGT 60850 ||| |||| |||| ||||| ||| ||| | |||||||||| ||| | |||| ||| |||||| CAACATGAAC AAACAATGGA AGAATTGAGA TCAAAGAAAA AAATATGACC CTACGGCAGT 279 TCAATAAGTT ATTAAAAATG CCAAAGCTAG AGGCATTAAA ATTGTACAAG GTACAAGAAA 60910 |||| ||||| ||||| |||| | ||| |||| |||||||||| |||||||||| | |||||| TCAAGAAGTT ATTAACAATG CTAAATCTAG AGGCATTAAA ATTGTACAAG GAGGAAGAAA 339 GAGGAAAGTT GTACTATTTG AATCAGAGGA AAATGATTGT GAAG-T--CG GATCTGAAGA 60967 |||||||| || | ||| | |||||||| ||||| ||| |||| | || |||||||||| GAGGAAAG-- CAAC-A-TTG ATTCAGAGGA AAATGCATGT GAAGTTGACG GATCTGAAGA 395 ACTTCATAAT CATGAGGTAG TGTCTTAAAA CACAAATTTA GATACAATTT TTTTGTTAAT 61027 || ||||||| ||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ACATCATAAT TATGAGGTAG TGGCTTAAAA CACAAATTTA GATACAATTT TTTTGTTACT 455 TAGTTGTCAA TATACAAAAA CCATTAAATT AAGTATTGTA TATAGTATGT TCCATGTGAG 61087 ||| |||||| |||||||||| ||| ||| | || || || || | | || | TAGATGTCAA TATACAAAAA --ATT--ATT --G--TT-TA AGTA-AATTT TGTATTCACG 505 TAATTGTATA TAGTATATTG CATATTTATG TTATTTTTTG TTTTTGTATA TATAT 61142 |||||||||| |||||||||| ||| |||| | | | |||| || || ||||| TAATTGTATA TAGTATATTG CATGTTTA-G TACACACAAG TTTTAGT-TA TATAT 558 hqPGS_C08HBa0060C12.1+_SGN-E547025- (60496 60684,60766 61142) ******************************************************************************** EST sequence 42 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 62578 to 66636): Exon 1 63961 64395 ( 435 n); cDNA 1 435 ( 435 n); score: 0.876 Intron 1 64396 64497 ( 102 n); Pd: 0.999 (s: 0.94), Pa: 0.999 (s: 0.84) Exon 2 64498 64784 ( 287 n); cDNA 436 722 ( 287 n); score: 0.868 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.873 722 1.000 C PGS_C08HBa0060C12.1+_SGN-E378935+ (63961 64395,64498 64784) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TTAATTACTT TTATAATCAG ACAGGATCGC CTGTGAATGT TGGTGAACAG 64020 |||| ||| | | |||||||| |||| |||| | || | | | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTTTTGA CTGCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 64080 ||||| |||| ||| ||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTACTCTTGG GGCAGAGGTT AGGGATGTTG TGACTAAGAT GAATGAGCTG 64140 |||||||||| |||||||||| || ||| || ||| |||||| ||||| |||| |||| || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TTAGTTACTC CAAATCTTTC CGATTTTTAC CCGGGGTTGG CCTGGTTTGA TTTGCAGGGT 64200 | || || | |||||||| ||||||||| ||||| |||| |||||||||| ||| |||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTAAAAAGA AGATGAAAGT GTTGGCAAAG AGATATGATA ACATATTTGA GAGCATGATT 64260 |||| ||||| |||| || || |||| |||| |||| ||||| | |||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAAATGAA TAGAAATGGG GTTGGCCAAG AAAGCAAGGA CTTTTTGCAA 64320 |||||||||| ||||| | | |||||||| |||||||||| ||||||| || |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT CCCAAAATGC CTCTGACCAT GACTGAACTC 64380 |||||||| | |||||||||| |||||||||| ||||||||| |||||||||| ||||||| || GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTACGGTATG TTTTATTAAT TGTGCATTCA AATTTGCTGC TTACACTATA 64440 |||||||||| ||| | AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TTTTCATAAA TAAAAAATCG TTGTGCATGA TAATAACTTC ACTAATACTA TGGACAGGAT 64500 ||| .......... .......... .......... .......... .......... .......GAT 438 ATGGTTGTTG GTGGAACTGA AACTAGTGCC AACACAGTTG AGTTTGCCAT GACTGAAATT 64560 ||||||| | |||||||||| || | | || ||| | |||| |||||||||| | |||||||| TTGGTTGTCG GTGGAACTGA CACAACTTCC AACGCGGTTG AGTTTGCCAT GGCTGAAATT 498 ATGAACAAAC CAGACGTCTT GAGGAAATTA CAACAAGAAG TGGATACAGT TGTGGGAAAA 64620 ||||||||| |||| || | ||| ||| || |||||||||| | |||||||| |||||||||| TTGAACAAAC CAGATATCCT GAGAAAAATA CAACAAGAAG TAGATACAGT TGTGGGAAAA 558 GATAACATAG TGGAAGAGTC TCATATACAA CACTTGCCGT ATTTGTATGC AGTTATGAAA 64680 |||||||||| |||||||||| |||||| ||| || || || | || | ||||| ||| |||||| GATAACATAG TGGAAGAGTC TCATATTCAA CAGTTACCAT ATCTCTATGC AGTGATGAAA 618 GAAGTCTTGC GTCTATATCC AGCTGTCCCA CTCTTGGTGC CTCATTGTCC TAGTGAGACA 64740 |||| | ||| | || |||| ||| ||||| ||||||| | |||||||||| |||||||||| GAAGCCATGC GCATACATCC AGCCCTCCCA CTCTTGGCTC CTCATTGTCC TAGTGAGACA 678 GTCACTGTTG GAGGATATGC TGTTCCTAAA GGATCTAGTG TTTT 64784 ||||||||| | ||||| | |||||||||| || ||| ||| |||| ATCACTGTTG GTGGATACAC TGTTCCTAAA GGGTCTCGTG TTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (63961 64395,64498 64784) ******************************************************************************** EST sequence 186 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 62578 to 66197): Exon 1 63961 64395 ( 435 n); cDNA 1 435 ( 435 n); score: 0.876 Intron 1 64396 64497 ( 102 n); Pd: 0.999 (s: 0.94), Pa: 0.999 (s: 0.84) Exon 2 64498 64600 ( 103 n); cDNA 436 538 ( 103 n); score: 0.854 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.872 538 1.000 C PGS_C08HBa0060C12.1+_SGN-E206806+ (63961 64395,64498 64600) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TTAATTACTT TTATAATCAG ACAGGATCGC CTGTGAATGT TGGTGAACAG 64020 |||| ||| | | |||||||| |||| |||| | || | | | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTTTTGA CTGCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 64080 ||||| |||| ||| ||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTACTCTTGG GGCAGAGGTT AGGGATGTTG TGACTAAGAT GAATGAGCTG 64140 |||||||||| |||||||||| || ||| || ||| |||||| ||||| |||| |||| || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TTAGTTACTC CAAATCTTTC CGATTTTTAC CCGGGGTTGG CCTGGTTTGA TTTGCAGGGT 64200 | || || | |||||||| ||||||||| ||||| |||| |||||||||| ||| |||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTAAAAAGA AGATGAAAGT GTTGGCAAAG AGATATGATA ACATATTTGA GAGCATGATT 64260 |||| ||||| |||| || || |||| |||| |||| ||||| | |||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAAATGAA TAGAAATGGG GTTGGCCAAG AAAGCAAGGA CTTTTTGCAA 64320 |||||||||| ||||| | | |||||||| |||||||||| ||||||| || |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT CCCAAAATGC CTCTGACCAT GACTGAACTC 64380 |||||||| | |||||||||| |||||||||| ||||||||| |||||||||| ||||||| || GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTACGGTATG TTTTATTAAT TGTGCATTCA AATTTGCTGC TTACACTATA 64440 |||||||||| ||| | AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TTTTCATAAA TAAAAAATCG TTGTGCATGA TAATAACTTC ACTAATACTA TGGACAGGAT 64500 ||| .......... .......... .......... .......... .......... .......GAT 438 ATGGTTGTTG GTGGAACTGA AACTAGTGCC AACACAGTTG AGTTTGCCAT GACTGAAATT 64560 ||||||| | |||||||||| || | | || ||| | |||| |||||||||| | |||||||| TTGGTTGTCG GTGGAACTGA CACAACTTCC AACGCGGTTG AGTTTGCCAT GGCTGAAATT 498 ATGAACAAAC CAGACGTCTT GAGGAAATTA CAACAAGAAG 64600 ||||||||| |||| || | ||| ||| || |||||||||| TTGAACAAAC CAGATATCCT GAGAAAAATA CAACAAGAAG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (63961 64395,64498 64600) ******************************************************************************** EST sequence 156 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 63392 to 65175): Exon 1 63992 64395 ( 404 n); cDNA 1 404 ( 404 n); score: 1.000 Intron 1 64396 64497 ( 102 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 64498 64565 ( 68 n); cDNA 405 472 ( 68 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E205363+ 1.000 472 1.000 C PGS_C08HBa0060C12.1+_SGN-E205363+ (63992 64395,64498 64565) Alignment (genomic DNA sequence = upper lines): CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 64051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 60 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 64111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 120 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 64171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 180 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 64231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 240 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 64291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 300 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 64351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 360 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGTATGT TTTATTAATT 64411 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACG...... .......... 404 GTGCATTCAA ATTTGCTGCT TACACTATAT TTTCATAAAT AAAAAATCGT TGTGCATGAT 64471 .......... .......... .......... .......... .......... .......... 404 AATAACTTCA CTAATACTAT GGACAGGATA TGGTTGTTGG TGGAACTGAA ACTAGTGCCA 64531 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GATA TGGTTGTTGG TGGAACTGAA ACTAGTGCCA 438 ACACAGTTGA GTTTGCCATG ACTGAAATTA TGAA 64565 |||||||||| |||||||||| |||||||||| |||| ACACAGTTGA GTTTGCCATG ACTGAAATTA TGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (63992 64395,64498 64565) ******************************************************************************** EST sequence 323 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 59776 to 66573): Exon 1 64352 64395 ( 44 n); cDNA 1 44 ( 44 n); score: 0.955 Intron 1 64396 64497 ( 102 n); Pd: 0.999 (s: 0.95), Pa: 0.999 (s: 0.84) Exon 2 64498 65114 ( 617 n); cDNA 45 661 ( 617 n); score: 0.874 MATCH C08HBa0060C12.1+ SGN-E378974- 0.874 661 0.908 C PGS_C08HBa0060C12.1+_SGN-E378974- (64352 64395,64498 65114) Alignment (genomic DNA sequence = upper lines): CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGTATGT TTTATTAATT 64411 |||||||||| |||||||||| |||||| ||| |||||||||| || | CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 GTGCATTCAA ATTTGCTGCT TACACTATAT TTTCATAAAT AAAAAATCGT TGTGCATGAT 64471 .......... .......... .......... .......... .......... .......... 44 AATAACTTCA CTAATACTAT GGACAGGATA TGGTTGTTGG TGGAACTGAA ACTAGTGCCA 64531 ||| ||||||| || ||||||||| || | | ||| .......... .......... ......GATT TGGTTGTCGG TGGAACTGAC ACAACTTCCA 78 ACACAGTTGA GTTTGCCATG ACTGAAATTA TGAACAAACC AGACGTCTTG AGGAAATTAC 64591 || | ||||| |||||||||| |||||||| |||||||||| ||| || || || ||| ||| ACGCGGTTGA GTTTGCCATG GCTGAAATTT TGAACAAACC AGATATCCTG AGAAAAATAC 138 AACAAGAAGT GGATACAGTT GTGGGAAAAG ATAACATAGT GGAAGAGTCT CATATACAAC 64651 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AACAAGAAGT AGATACAGTT GTGGGAAAAG ATAACATAGT GGAAGAGTCT CATATTCAAC 198 ACTTGCCGTA TTTGTATGCA GTTATGAAAG AAGTCTTGCG TCTATATCCA GCTGTCCCAC 64711 | || || || | | |||||| || ||||||| ||| | |||| || ||||| || |||||| AGTTACCATA TCTCTATGCA GTGATGAAAG AAGCCATGCG CATACATCCA GCCCTCCCAC 258 TCTTGGTGCC TCATTGTCCT AGTGAGACAG TCACTGTTGG AGGATATGCT GTTCCTAAAG 64771 |||||| || |||||||||| ||||||||| |||||||||| ||||| || |||||||||| TCTTGGCTCC TCATTGTCCT AGTGAGACAA TCACTGTTGG TGGATACACT GTTCCTAAAG 318 GATCTAGTGT TTTCGTAAAC GTATGGGCTA TACATCGAGA TCCTTCTATT TGGGAAAATC 64831 | ||| |||| ||| ||||| |||||||||| |||| |||| ||||||||| ||| |||||| GGTCTCGTGT TTTTGTAAAT GTATGGGCTA TACACAGAGA TCCTTCTATG TGGAAAAATC 378 CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT GGAAATGATT 64891 |||| ||||| | ||| || |||||| ||| | |||||||| | | | ||| |||||||||| CAACAGAGTT CTGTCCAGAG AGATTTTTGG ATAATAAATG GAATTATAGT GGAAATGATT 438 TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC ATGGCAGAGA 64951 | | ||| || ||| |||||| |||||||||| |||| |||| |||| ||||| |||||||||| TCAACTATTT CCCATTTGGT TCTGGCAGAA GAATGTGTGC GGGGATAGCC ATGGCAGAGA 498 GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA TTGCCTGAAG 65011 |||||||||| |||||||||| |||||||| | |||||||||| || |||||| |||||||||| GGATGTTCAT GTATTCACTG GCTTCACTCA TTCATTCTTT CGATTGGAAA TTGCCTGAAG 558 GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA ATGCCTCTGG 65071 ||||||| || |||| ||| | ||||||||| | | | | |||||||||| |||||||||| GAGAGACGTT AGACCTTAAA GAGAAGTTTT GTATTGCTTT GAAGAAGAAA ATGCCTCTGG 618 TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA 65114 |||||||||| |||||||||| || ||||||| |||||| || ||| TGGCTATACC TACTCCAAGA TTGTCCAATC CAACACAGTA TGA 661 hqPGS_C08HBa0060C12.1+_SGN-E378974- (64352 64395,64498 65114) ******************************************************************************** EST sequence 88 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 59961 to 68671): Exon 1 63542 64263 ( 722 n); cDNA 93 813 ( 721 n); score: 0.860 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.860 722 0.887 C PGS_C08HBa0060C12.1+_SGN-E553649+ (63542 64263) Alignment (genomic DNA sequence = upper lines): TTTTCTCCTG TCTTTTAGCT TTGCTTTGGT GTTTCATCAG CAACTCAAAC AAGGGGCTGC 63601 |||||| | | |||||||| || ||||||| ||||||||| ||||| ||| || || |||| TTTTCT-TGG TTTTTTAGCT TTACTTTGGT TTTTCATCAG TAACTCGAAC AAAGGTCTGC 151 CACCAGGGCC TAAAGCTTTG CCCTTGATAG GTAATCTCCA TTCTCTTGAA CCTCAACTTC 63661 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||| |||||| CACCAGGGCC TAAAGCTTTG CCCTTGATAG GTAATCTCCA TTCTCTTGAT CCTGAACTTC 211 ACACCTATTT CGCATCTCTT TCCAAAATTT ATGGCCCCAT TTGTAGAATC TGGCTTGGTA 63721 |||||||||| |||||||| ||| |||||| |||||||||| |||||||||| ||||||||| ACACCTATTT TGCATCTCTG TCCCAAATTT ATGGCCCCAT TTGTAGAATC TGGCTTGGTC 271 AAAAACTTGG GATTATTGTT ACTTCCCCTG CCTTAGCTCG CGAGGTTCTT AAGGATAAAG 63781 |||||||||| ||||||| || ||||| || | |||||||| ||| ||||| |||||||||| AAAAACTTGG GATTATTATT ACTTCACCAG AATTAGCTCG CGACGTTCTA AAGGATAAAG 331 ATACCATTTT TGCTAACAGA GATGTGAGTG TTGCTGGTAG AGAAGTTACA TATGGTGGAA 63841 ||| ||||| |||||||||| || ||| || ||||| |||| || || |||||| | | ATATTATTTT TGCTAACAGA GACGTGCCTG CTGCTGCAGT AGAAATTTCA TATGGTTGCA 391 CTGACATAGT TTGGACTCCT TATGGACCTA AGTGGCGTAT GTTGAGGAAG GTTTGTGTTC 63901 ||||||| | ||||| | || |||||||| | ||||| || | |||| ||| ||||||||| ATGACATACT TTGGAATTCT TATGGACCAC AATGGCGAAT GATGAGAAAG CTTTGTGTTC 451 AAGAAATGCT TAGTGCTTCT ACTTTAGATT CTCTTTATGC ACTGAGGCGA AGGGAGCTTA 63961 || ||||| |||| |||| |||||||||| || ||| ||| ||| |||||| |||||||||| GCGATATGCT TAGTTGTTCT ACTTTAGATT CTGTTTGTGC ACTAAGGCGA AGGGAGCTTA 511 GACAATCGAT TAATTACTTT TATAATCAGA CAGGATCGCC TGTGAATGTT GGTGAACAGA 64021 |||||||||| |||||||| |||| | ||| || | || ||||| ||| ||||| |||| GACAATCGAT GAATTACTTC TATAGTAAGA AGGGTTTACC AGTGAACGTT GGTGAGCAGA 571 TGTTTTTGAC TGCACTTAAT GTGATTACAA GCATGTTATG GGGTGGCACA GTGAAGGGTG 64081 |||| ||||| || ||||| |||||||||| |||||||||| |||| ||||| |||||||||| TGTTCTTGAC TGTGTTTAAT GTGATTACAA GCATGTTATG GGGTAGCACA GTGAAGGGTG 631 AGGAAAGAGC TACTCTTGGG GCAGAGGTTA GGGATGTTGT GACTAAGATG AATGAGCTGT 64141 |||||||||| || ||||||| |||||| ||| || ||||||| || | ||||| || ||||| AGGAAAGAGC TAATCTTGGG GCAGAGTTTA GGTATGTTGT GAGTGAGATG GCTGCGCTGT 691 TAGTTACTCC AAATCTTTCC GATTTTTACC CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG 64201 || ||| ||||||||| ||||| |||| | || ||||| |||||||||| || ||||||| GCAGTATTCC CAATCTTTCC GATTTCTACC CAGGTTTGGC CTGGTTTGAT TTCCAGGGTG 751 TTAAAAAGAA GATGAAAGTG TTGGCAAAGA GATATGATAA CATATTTGAG AGCATGATTG 64261 ||| |||||| |||||| || || ||||| ||| ||| || |||||||| |||||||||| TTACAAAGAA GATGAAGCTG CTGTTAAAGA GATTTGAGAA GATATTTGAT AGCATGATTG 811 AT 64263 || AT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (63542 64263) ******************************************************************************** EST sequence 102 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 60926 to 69323): Exon 1 63551 64228 ( 678 n); cDNA 100 770 ( 671 n); score: 0.851 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.851 678 0.878 C PGS_C08HBa0060C12.1+_SGN-E554337+ (63551 64228) Alignment (genomic DNA sequence = upper lines): GTCTTTTAGC TTTGCTTTGG TGTTTCATCA GCAACTCAAA CAAGGGGCTG CCACCAGGGC 63610 || ||||||| ||| |||||| |||||||||| | |||||||| |||||| || |||||||||| GTTTTTTAGC TTTACTTTGG TGTTTCATCA GTAACTCAAA CAAGGGATTG CCACCAGGGC 159 CTAAAGCTTT GCCCTTGATA GGTAATCTCC ATTCTCTTGA ACCTCAACTT CACACCTATT 63670 ||||| |||| |||||||||| ||||||||| ||||||||| | | | | |||||||| CTAAACCTTT GCCCTTGATA GGTAATCTCT ATTCTCTTG- A--T---C-- C-CACCTATT 210 TCGCATCTCT TTCCAAAATT TATGGCCCCA TTTGTAGAAT CTGGCTTGGT AAAAAACTTG 63730 | |||||||| |||| ||| | |||||||||| |||||||| | |||||||||| |||||| ||| TTGCATCTCT TTCCCAAACT TATGGCCCCA TTTGTAGACT CTGGCTTGGT AAAAAAGTTG 270 GGATTATTGT TACTTCCCCT GCCTTAGCTC GCGAGGTTCT TAAGGATAAA GATACCATTT 63790 |||||||| | |||||| ||| ||||||||| | |||||||| |||||||||| || ||||||| GGATTATTAT TACTTCACCT ACCTTAGCTC GTGAGGTTCT TAAGGATAAA GACACCATTT 330 TTGCTAACAG AGATGTGAGT GTTGCTGGTA GAGAAGTTAC ATATGGTGGA ACTGACATAG 63850 |||||||||| |||||| | ||||| | |||| | | ||||||||| | | |||| TTGCTAACAG AGATGTCCCA GCTGCTGCAA AAGAATTATC ATATGGTGGC AATAGCATAC 390 TTTGGACTCC TTATGGACCT AAGTGGCGTA TGTTGAGGAA GGTTTGTGTT CAAGAAATGC 63910 |||||||||| ||||||||| || ||| | | |||||||||| |||||| ||| | | |||| TTTGGACTCC TTATGGACCG AAATGGAGAA TGTTGAGGAA GGTTTGCGTT CGCAATATGC 450 TTAGTGCTTC TACTTTAGAT TCTCTTTATG CACTGAGGCG AAGGGAGCTT AGACAATCGA 63970 ||||| ||| |||||||||| ||| |||||| |||| ||| |||||||||| |||||||||| TTAGTTATTC TACTTTAGAT TCTGTTTATG CACTAAGGAA AAGGGAGCTT AGACAATCGA 510 TTAATTACTT TTATAATCAG ACAGGATCGC CTGTGAATGT TGGTGAACAG ATGTTTTTGA 64030 | |||||||| || | |||| | || | | | || ||||| |||||| ||| ||||| |||| TCAATTACTT CTACAGTCAG AAGGGTTTAC CAGTAAATGT TGGTGAGCAG ATGTTCTTGA 570 CTGCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG 64090 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG 630 CTACTCTTGG GGCAGAGGTT AGGGATGTTG TGACTAAGAT GAATGAGCTG TTAGTTACTC 64150 |||||||||| || ||| || ||| || ||| | ||| | || | || |||| | || || CTACTCTTGG AGCTGAGTTT AGGCATATTG TCACTGAAAT GGCTGCGCTG GTCAGTATTC 690 CAAATCTTTC CGATTTTTAC CCGGGG-TTG GCCTGGTTTG ATTTGCAGGG TGTTAAAAAG 64209 | ||| ||| |||||||||| |||||| ||| |||||||||| |||| || || |||| ||| CCAATTATTC CGATTTTTAC CCGGGGCTTG GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA 750 AAGATGAAA- GTGTTGGCAA 64228 ||||||||| |||||||||| AAGATGAAAG GTGTTGGCAA 770 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (63551 64228) ******************************************************************************** EST sequence 130 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 63018 to 64713): Exon 1 63618 64103 ( 486 n); cDNA 1 486 ( 486 n); score: 0.996 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.996 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (63618 64103) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 63677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 63737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 63797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 63857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTAGTGC 63917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACTTTA GATTCTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 63977 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 64037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 64097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGGGC 64103 |||||| TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (63618 64103) ******************************************************************************** EST sequence 204 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 64220 to 66635): Exon 1 64820 65114 ( 295 n); cDNA 1 295 ( 295 n); score: 1.000 Intron 1 65115 65548 ( 434 n); Pd: 0.821 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 65549 65927 ( 379 n); cDNA 296 673 ( 378 n); score: 0.982 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.990 674 1.001 C PGS_C08HBa0060C12.1+_SGN-E320419+ (64820 65114,65549 65927) Alignment (genomic DNA sequence = upper lines): TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 64879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 60 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 64939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 120 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 64999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 180 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 65059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 240 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGTAAG 65119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGA..... 295 ATAGAAATAT GTCTGTAAAG AGTCGCTTCT GCATGGTGAT TTTATCTTTT GTGTGATGAA 65179 .......... .......... .......... .......... .......... .......... 295 CTATGGAAAT GTGATCAATG AAAGATGTTG CTCTATCCTG GCAATGGTCT TATGAGCAAC 65239 .......... .......... .......... .......... .......... .......... 295 TCAATGTTCC ATGTGAAATG CCTAGTTTCC ATGACTTCTT AAATATTGTA TTCTGAATCG 65299 .......... .......... .......... .......... .......... .......... 295 AATTTGAAAT AATAGTACAT GTATGACTTT ATTGTAGAGA TTATGCTTCT ATCTTTTGTT 65359 .......... .......... .......... .......... .......... .......... 295 TGATGAACTA TATATGGAGA TATAATACTT AAATTTACAA GGGCAATTAT TATTACTAAG 65419 .......... .......... .......... .......... .......... .......... 295 CAAAACCTGG AGCAAGATGT GTGAAATTAT TTCTAAAAGC TATGACATCC TGAAAAGGAT 65479 .......... .......... .......... .......... .......... .......... 295 TTTAAAGAGC ATATTTGTGC TCAATATATA CCTAATTTAA TACTATTTTC TTATTTGTCT 65539 .......... .......... .......... .......... .......... .......... 295 TGTGAACAGG ACAGACAAGG TATCAAAAAG TGAAGATTCA TTTGTGTTAA ACAACAAGGG 65599 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G ACAGACAAGG TATCAAAAAG TGAAGATTCA TTTGTGTTAA ACAACAAGGG 346 GCCATTGACT TCATCACTAA ATATAAATGT TGAAGTGGAA AATGGCTTCC CACCACACTG 65659 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATTGACT TCATCACTAA ATATAAATGT TGAAGTGGAA AATGGCTTCC CACCACACTG 406 TTTCTGCCAT TTCTCTCATT TTTCTCTTAG GCTGATATAA TGTCACTAAA ATTCTTCAAA 65719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTGCCAT TTCTCTCATT TTTCTCTTAG GCTGATATAA TGTCACTAAA ATTCTTCAAA 466 CCTTTGTGTG ATTCTTTCCC ATGGCCCTGG CAAGAACAAA ATATTGAGAA AAGTGGTGTA 65779 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| CCTTTGTGTG ATTCTTTCCC ATGGCCCTGG CAAGAACAAA ATAGTGAGAA GAGTGGTGTA 526 TTTTTCTCCT ATGTTCTTGG CAGTTTAGCT TTAATATGGT TTCTTTGTTT TTACATCAAC 65839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCTCCT ATGTTCTTGG CAGTTTAGCT TTAATATGGT TTCTTTGTTT TTACATCAAC 586 AAGTCAAAAA AGGGACAACC GCCATTATGG GCCTAAAGCT TTGCCTTTGC TAGGTAATCT 65899 |||||||| |||||| ||| |||||||||| |||||||||| |||||||||| || ||||||| AAGTCAAAGG AGGGACGACC GCCATTATGG GCCTAAAGCT TTGCCTTTGC TANGTAATCT 646 CCACTCTCTT GATCCCCAAC TTCACACC 65927 |||||||||| ||| |||||| |||||||| CCACTCTCTT GAT-CCCAAC TTCACACC 673 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (64820 65114,65549 65927) ******************************************************************************** EST sequence 289 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 63376 to 67125): Exon 1 64814 65067 ( 254 n); cDNA 1 254 ( 254 n); score: 0.886 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.886 254 0.702 C PGS_C08HBa0060C12.1+_SGN-E234103- (64814 65067) Alignment (genomic DNA sequence = upper lines): CTTCTATTTG GGAAAATCCA ACTGAGTTCC ATCCGGAAAG ATTTATGGAG AATAAATGGG 64873 ||||||| || |||||||||| |||||||||| ||| || || |||| |||| ||||| |||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ACTTCAGTGG AAATGATTTG ACCTACTTCC CGTTTGGTTC TGGCAGAAGA ATCTGTGTGG 64933 | | ||||| ||||||||| | ||| |||| | |||||||| |||||||||| ||||||| || ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGTTAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTTATT CATTCTTTTG 64993 || ||| ||| |||| ||||| |||||||||| |||||||||| |||||| | |||||||| | GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACTTTACAGA GAAGTTTGTG CTCGTTCTGA 65053 |||||||||| |||||||||| |||||||||| || | ||||| |||||||| | | ||||||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAGAAAAT GCCT 65067 ||||||| || | || AGAAGAAGAT GTCT 254 hqPGS_C08HBa0060C12.1+_SGN-E234103- (64814 65067) ******************************************************************************** EST sequence 299 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 63396 to 67143): Exon 1 64817 65067 ( 251 n); cDNA 1 252 ( 252 n); score: 0.871 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.871 251 0.697 C PGS_C08HBa0060C12.1+_SGN-E234174- (64817 65067) Alignment (genomic DNA sequence = upper lines): CTATTTGGGA AAATCCAACT GA-GTTCCAT CCGGAAAGAT TTATGGAGAA TAAATGGGAC 64875 |||| ||||| |||||| ||| || ||||| | || || |||| || |||| || ||| ||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TTCAGTGGAA ATGATTTGAC CTACTTCCCG TTTGGTTCTG GCAGAAGAAT CTGTGTGGGG 64935 | ||||||| ||||||| | ||| ||||| |||||||||| |||||||||| ||||| |||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 TTAGCCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTTATTCA TTCTTTTGAC 64995 ||| ||||| |||||||||| |||||||||| |||||||||| |||| | || |||||| ||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CTGAAGGAGA GACATTAGAC TTTACAGAGA AGTTTGTGCT CGTTCTGAAG 65055 |||||||||| |||||||||| |||||||| | | ||||||| |||||| | | ||||||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATGC CT 65067 ||||| ||| || AAGAAGATGT CT 252 hqPGS_C08HBa0060C12.1+_SGN-E234174- (64817 65067) ******************************************************************************** EST sequence 141 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 63751 to 65981): Exon 1 64882 65114 ( 233 n); cDNA 1 233 ( 233 n); score: 0.884 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.884 233 0.879 C PGS_C08HBa0060C12.1+_SGN-E243190+ (64882 65114) Alignment (genomic DNA sequence = upper lines): GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 64941 |||||||||| | | ||| | ||| |||||| ||||| |||| || | || | |||| ||| | GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 65001 |||||||||| |||||||||| ||||||||| ||||| || | |||||||||| ||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 65061 ||||| |||| ||||||| || |||| | ||| |||||||||| | | ||||| |||||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA 65114 |||||||||| |||||||||| |||||||||| || || ||| ||| |||||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (64882 65114) ******************************************************************************** EST sequence 41 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 65133 to 69149): Exon 1 66179 66618 ( 440 n); cDNA 6 435 ( 430 n); score: 0.791 Intron 1 66619 67037 ( 419 n); Pd: 0.996 (s: 0.98), Pa: 0.997 (s: 0.90) Exon 2 67038 67328 ( 291 n); cDNA 436 722 ( 287 n); score: 0.845 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.813 731 1.012 C PGS_C08HBa0060C12.1+_SGN-E378935+ (66179 66618,67038 67328) Alignment (genomic DNA sequence = upper lines): ATCGATCAAT TACTTTTATA ATCAGGCGGG ATCGCCTGTG AATATTGGTG AACAGATGTT 66238 ||| |||||| ||||| |||| |||| ||| | || ||| ||| |||||| |||||||||| ATCAATCAAT TACTTGTATA GTCAGAGGGG TTTACCAGTG AATGTTGGTG AACAGATGTT 65 CTTGACTGCG CTTAATGTGA TAACAAGCAT GTTATGGGGT GGGACAGTGA AGGGTGAGGA 66298 |||||||| | |||||||||| | |||||||| ||||||||| || || ||| |||||||||| CTTGACTGTG CTTAATGTGA TGACAAGCAT GTTATGGGGA GGCACGATGA AGGGTGAGGA 125 AAGCTCTAGA CTTGGAGC-- -----A-GCA TGTTGTAGCT GATATGACTG AGCTGTTAGG 66350 ||| ||| |||||||| | ||| |||||| || || || ||| || || | | AAGAGCTACT CTTGGAGCTG AGTTTAGGCA TGTTGTGACT GAGATAGCTG AGTTGATCAG 185 TACTCCAAAT ATTTCCGATT TTTATCCGGG CTTGGCCAGG TTCAATTTGA AGGGTGTAAC 66410 || ||| ||| |||| |||| |||| ||||| ||||||| || || |||| ||||||| | TATTCCCAAT CTTTCTGATT TTTACCCGGG CTTGGCCTGG TTTGATTTCC AGGGTGTTAT 245 AAAGAAGATG AATGTATTGG AAAAGAGATA TGATAAGATA TTTGAGAGCA TGATTGATCA 66470 ||||||||| || || ||| |||||||| |||||||||| ||||| |||| |||||||||| AAAGAAGATT AAGGTGTTGC TAAAGAGATT TGATAAGATA TTTGAAAGCA TGATTGATCA 305 AAGACAGAAA ATGGATTGAA TTGCTGATCA GATGGGAACT GGTGTTGGCC AAGAAAGCAA 66530 ||||| ||| | ||| | || || || || | |||||||||| |||||||||| AAGAC--AAA A---ATT--A -----GA-CA GA----AA-T GGTGTTGGCC AAGAAAGCAA 347 GGAATTTTTG CAAGTTTTGC TGAAGTTAAA AGATGAATCA GATGCCAAAA TGCCTCTGAC 66590 || |||||| |||||||||| | ||||| || ||||||| || |||||||||| |||||||||| AGACTTTTTG CAAGTTTTGC TCAAGTTGAA AGATGAAGCA GATGCCAAAA TGCCTCTGAC 407 CATGATTGAA ATCAAAGCCT TACTTATGGT ATGTTTTATT CGTAAAGTTT TGTCGTGAGC 66650 ||||| |||| |||||||||| |||||||| CATGACTGAA ATCAAAGCCT TACTTATG.. .......... .......... .......... 435 TGAGCTGTTG TTTCATTCTT CTTCTATGAA AATTCACATT CATTTGATAT GGTGCTGGTT 66710 .......... .......... .......... .......... .......... .......... 435 TCAAAGTTTG CATTTTACTT CAAATAGTCT AATTCCTTAC CTATTACAGA AAAAAAATTT 66770 .......... .......... .......... .......... .......... .......... 435 GGTTTGTAGT GATGTTATTC ATAATAAGAG GATCAATGCA AATAAAAGTG AAATATAGGA 66830 .......... .......... .......... .......... .......... .......... 435 TAGTAAATGT ACTGAAGAAT TATTACATCA GATGAGTAAA ATATATTAGA TGAATCAGGT 66890 .......... .......... .......... .......... .......... .......... 435 TTATATTAAT TCATGTTCTG AACTGTTAAT TGCTACCTTT TTATTGGATT GCATTAAGGA 66950 .......... .......... .......... .......... .......... .......... 435 AGACATAACT GTGAATTAAG GCAGTGAACC ATGAACTGAA ATCCAATATA CAGTATTTGT 67010 .......... .......... .......... .......... .......... .......... 435 TAATAACTTC ACAAATATTG TGGACAGGAT ATGGTGGTTG GTGGAACTGA CACAACCTCC 67070 ||| |||| || | |||||||||| |||||| ||| .......... .......... .......GAT TTGGTTGTCG GTGGAACTGA CACAACTTCC 468 AACGCGGTTT AGTTTGCCAT GGCTAAAATT ATGAACAAAC CATACGTCCT GAGGAAGTTA 67130 ||||||||| |||||||||| |||| ||||| ||||||||| || | |||| ||| || || AACGCGGTTG AGTTTGCCAT GGCTGAAATT TTGAACAAAC CAGATATCCT GAGAAAAATA 528 CAACAAGAAC TAGAGGTAGT TGTGGGAAAA GATAATATTG TGAAAGAGTC TCATATTCAG 67190 ||||||||| |||| ||| |||||||||| ||||| || | || ||||||| ||||||||| CAACAAGAAG TAGATACAGT TGTGGGAAAA GATAACATAG TGGAAGAGTC TCATATTCAA 588 CAATTACCAT ATAGATCTTT ATGCAGTTGT GAAAGAAGCC TTGCGTTTAC ATCCAACTCT 67250 || ||||| || |||| | ||||||| | |||||||||| |||| ||| ||||| | || CAGTTACC-- AT--ATCTCT ATGCAGTGAT GAAAGAAGCC ATGCGCATAC ATCCAGCCCT 644 TCCACTCTTG GTGCCACATT GTCCTAGTGA GACATGTACT GTAGGAGGAT ACACTGTTCC 67310 ||||||||| | || |||| |||||||||| |||| ||| || || |||| |||||||||| CCCACTCTTG GCTCCTCATT GTCCTAGTGA GACAATCACT GTTGGTGGAT ACACTGTTCC 704 TAATGGATCT CGTGTTTT 67328 ||| || ||| |||||||| TAAAGGGTCT CGTGTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (66179 66618,67038 67328) ******************************************************************************** EST sequence 185 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 65133 to 68249): Exon 1 66179 66618 ( 440 n); cDNA 6 435 ( 430 n); score: 0.791 Intron 1 66619 67037 ( 419 n); Pd: 0.996 (s: 0.98), Pa: 0.997 (s: 0.90) Exon 2 67038 67139 ( 102 n); cDNA 436 537 ( 102 n); score: 0.873 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.806 542 1.007 C PGS_C08HBa0060C12.1+_SGN-E206806+ (66179 66618,67038 67139) Alignment (genomic DNA sequence = upper lines): ATCGATCAAT TACTTTTATA ATCAGGCGGG ATCGCCTGTG AATATTGGTG AACAGATGTT 66238 ||| |||||| ||||| |||| |||| ||| | || ||| ||| |||||| |||||||||| ATCAATCAAT TACTTGTATA GTCAGAGGGG TTTACCAGTG AATGTTGGTG AACAGATGTT 65 CTTGACTGCG CTTAATGTGA TAACAAGCAT GTTATGGGGT GGGACAGTGA AGGGTGAGGA 66298 |||||||| | |||||||||| | |||||||| ||||||||| || || ||| |||||||||| CTTGACTGTG CTTAATGTGA TGACAAGCAT GTTATGGGGA GGCACGATGA AGGGTGAGGA 125 AAGCTCTAGA CTTGGAGC-- -----A-GCA TGTTGTAGCT GATATGACTG AGCTGTTAGG 66350 ||| ||| |||||||| | ||| |||||| || || || ||| || || | | AAGAGCTACT CTTGGAGCTG AGTTTAGGCA TGTTGTGACT GAGATAGCTG AGTTGATCAG 185 TACTCCAAAT ATTTCCGATT TTTATCCGGG CTTGGCCAGG TTCAATTTGA AGGGTGTAAC 66410 || ||| ||| |||| |||| |||| ||||| ||||||| || || |||| ||||||| | TATTCCCAAT CTTTCTGATT TTTACCCGGG CTTGGCCTGG TTTGATTTCC AGGGTGTTAT 245 AAAGAAGATG AATGTATTGG AAAAGAGATA TGATAAGATA TTTGAGAGCA TGATTGATCA 66470 ||||||||| || || ||| |||||||| |||||||||| ||||| |||| |||||||||| AAAGAAGATT AAGGTGTTGC TAAAGAGATT TGATAAGATA TTTGAAAGCA TGATTGATCA 305 AAGACAGAAA ATGGATTGAA TTGCTGATCA GATGGGAACT GGTGTTGGCC AAGAAAGCAA 66530 ||||| ||| | ||| | || || || || | |||||||||| |||||||||| AAGAC--AAA A---ATT--A -----GA-CA GA----AA-T GGTGTTGGCC AAGAAAGCAA 347 GGAATTTTTG CAAGTTTTGC TGAAGTTAAA AGATGAATCA GATGCCAAAA TGCCTCTGAC 66590 || |||||| |||||||||| | ||||| || ||||||| || |||||||||| |||||||||| AGACTTTTTG CAAGTTTTGC TCAAGTTGAA AGATGAAGCA GATGCCAAAA TGCCTCTGAC 407 CATGATTGAA ATCAAAGCCT TACTTATGGT ATGTTTTATT CGTAAAGTTT TGTCGTGAGC 66650 ||||| |||| |||||||||| |||||||| CATGACTGAA ATCAAAGCCT TACTTATG.. .......... .......... .......... 435 TGAGCTGTTG TTTCATTCTT CTTCTATGAA AATTCACATT CATTTGATAT GGTGCTGGTT 66710 .......... .......... .......... .......... .......... .......... 435 TCAAAGTTTG CATTTTACTT CAAATAGTCT AATTCCTTAC CTATTACAGA AAAAAAATTT 66770 .......... .......... .......... .......... .......... .......... 435 GGTTTGTAGT GATGTTATTC ATAATAAGAG GATCAATGCA AATAAAAGTG AAATATAGGA 66830 .......... .......... .......... .......... .......... .......... 435 TAGTAAATGT ACTGAAGAAT TATTACATCA GATGAGTAAA ATATATTAGA TGAATCAGGT 66890 .......... .......... .......... .......... .......... .......... 435 TTATATTAAT TCATGTTCTG AACTGTTAAT TGCTACCTTT TTATTGGATT GCATTAAGGA 66950 .......... .......... .......... .......... .......... .......... 435 AGACATAACT GTGAATTAAG GCAGTGAACC ATGAACTGAA ATCCAATATA CAGTATTTGT 67010 .......... .......... .......... .......... .......... .......... 435 TAATAACTTC ACAAATATTG TGGACAGGAT ATGGTGGTTG GTGGAACTGA CACAACCTCC 67070 ||| |||| || | |||||||||| |||||| ||| .......... .......... .......GAT TTGGTTGTCG GTGGAACTGA CACAACTTCC 468 AACGCGGTTT AGTTTGCCAT GGCTAAAATT ATGAACAAAC CATACGTCCT GAGGAAGTTA 67130 ||||||||| |||||||||| |||| ||||| ||||||||| || | |||| ||| || || AACGCGGTTG AGTTTGCCAT GGCTGAAATT TTGAACAAAC CAGATATCCT GAGAAAAATA 528 CAACAAGAA 67139 ||||||||| CAACAAGAA 537 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (66179 66618,67038 67139) ******************************************************************************** EST sequence 155 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 65101 to 68115): Exon 1 66207 66618 ( 412 n); cDNA 3 404 ( 402 n); score: 0.816 Intron 1 66619 67037 ( 419 n); Pd: 0.996 (s: 0.92), Pa: 0.997 (s: 0.82) Exon 2 67038 67105 ( 68 n); cDNA 405 472 ( 68 n); score: 0.838 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.819 480 1.017 C PGS_C08HBa0060C12.1+_SGN-E205363+ (66207 66618,67038 67105) Alignment (genomic DNA sequence = upper lines): GGATCGCCTG TGAATATTGG TGAACAGATG TTCTTGACTG CGCTTAATGT GATAACAAGC 66266 |||||||||| ||||| |||| |||||||||| || ||||||| | |||||||| ||| |||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GTGGGACAGT GAAGGGTGAG GAAAGCTCTA GACTTGGAGC --A-G-C--- 66319 |||||||||| |||| ||||| |||||||||| ||||| ||| ||||| || | | ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 -ATGTTGTAG CTGATATGAC TGAGCTGTTA GGTACTCCAA ATATTTCCGA TTTTTATCCG 66378 ||||||| || | |||| |||||||||| | |||||||| || ||||||| |||||| ||| GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 GGCTTGGCCA GGTTCAATTT GAAGGGTGTA ACAAAGAAGA TGAATGTATT GGAAAAGAGA 66438 || |||||| |||| |||| | ||||||| | |||||||| |||| || || || ||||||| GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TATGATAAGA TATTTGAGAG CATGATTGAT CAAAGACAGA AAATGGATTG AATTGCTGAT 66498 |||||||| | |||||||||| |||||||||| |||||||| | ||| | || | || TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACA-A AAA---A-TG -A------AT 290 CAGATGGGAA CTGGTGTTGG CCAAGAAAGC AAGGAATTTT TGCAAGTTTT GCTGAAGTTA 66558 ||| || ||| ||||| |||||||||| ||||| |||| |||||||||| ||||||||| -AGA----AA -TGGGGTTGG CCAAGAAAGC AAGGACTTTT TGCAAGTTTT GCTGAAGTTG 344 AAAGATGAAT CAGATGCCAA AATGCCTCTG ACCATGATTG AAATCAAAGC CTTACTTATG 66618 ||||||||| ||||| |||| |||||||||| ||||||| || || ||||||| |||||||| | AAAGATGAAG CAGATCCCAA AATGCCTCTG ACCATGACTG AACTCAAAGC CTTACTTACG 404 GTATGTTTTA TTCGTAAAGT TTTGTCGTGA GCTGAGCTGT TGTTTCATTC TTCTTCTATG 66678 .......... .......... .......... .......... .......... .......... 404 AAAATTCACA TTCATTTGAT ATGGTGCTGG TTTCAAAGTT TGCATTTTAC TTCAAATAGT 66738 .......... .......... .......... .......... .......... .......... 404 CTAATTCCTT ACCTATTACA GAAAAAAAAT TTGGTTTGTA GTGATGTTAT TCATAATAAG 66798 .......... .......... .......... .......... .......... .......... 404 AGGATCAATG CAAATAAAAG TGAAATATAG GATAGTAAAT GTACTGAAGA ATTATTACAT 66858 .......... .......... .......... .......... .......... .......... 404 CAGATGAGTA AAATATATTA GATGAATCAG GTTTATATTA ATTCATGTTC TGAACTGTTA 66918 .......... .......... .......... .......... .......... .......... 404 ATTGCTACCT TTTTATTGGA TTGCATTAAG GAAGACATAA CTGTGAATTA AGGCAGTGAA 66978 .......... .......... .......... .......... .......... .......... 404 CCATGAACTG AAATCCAATA TACAGTATTT GTTAATAACT TCACAAATAT TGTGGACAGG 67038 | .......... .......... .......... .......... .......... .........G 405 ATATGGTGGT TGGTGGAACT GACACAACCT CCAACGCGGT TTAGTTTGCC ATGGCTAAAA 67098 ||||||| || |||||||||| || || | ||||| | || | |||||||| ||| || ||| ATATGGTTGT TGGTGGAACT GAAACTAGTG CCAACACAGT TGAGTTTGCC ATGACTGAAA 465 TTATGAA 67105 ||||||| TTATGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (66207 66618,67038 67105) ******************************************************************************** EST sequence 56 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 61446 to 69835): Exon 1 67160 67714 ( 555 n); cDNA 1 549 ( 549 n); score: 0.868 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.868 555 0.779 C PGS_C08HBa0060C12.1+_SGN-E551573+ (67160 67714) Alignment (genomic DNA sequence = upper lines): AGATAATATT GTGAAAGAGT CTCATATTCA GCAATTACCA TATAGATCTT TATGCAGTTG 67219 |||||||||| || |||||| |||||||||| ||||||||| || |||| |||||||| AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACC- -AT--ATCTC TATGCAGTGA 56 TGAAAGAAGC CTTGCGTTTA CATCCAACTC TTCCACTCTT GGTGCCACAT TGTCCTAGTG 67279 ||||||||| ||||| | |||||| || ||| || || |||||||||| ||||| |||| TGAAAGAAGT ATTGCGCATG CATCCAGCTA CTCCGCTATT GGTGCCACAT TGTCCAAGTG 116 AGACATGTAC TGTAGGAGGA TACACTGTTC CTAATGGATC TCGTGTTTTC GTAAATGTAT 67339 | ||||| || ||| |||||| |||||||||| |||| ||||| |||||||||| ||||||||| AAACATGCAC TGTGGGAGGA TACACTGTTC CTAAAGGATC TCGTGTTTTC ATAAATGTAT 176 GGGCTATACA GAGAGATCCT TCTATCTGGA AAAATCCAAG AGAGTTCTGT CCAGAGAGAT 67399 |||||||||| ||||||||| |||||||||| |||||||| ||||||| || |||||||||| GGGCTATACA AAGAGATCCT TCTATCTGGA GAAATCCAAC AGAGTTCCGT CCAGAGAGAT 236 TTTTCGACAA TAAATGGGAT GATAATGGAA ATGATGTCAA CTACTTCCCA TTTGGCTCTG 67459 |||| ||||| |||||||||| || ||||| ||||| |||| ||| || ||| ||||| |||| TTTTGGACAA TAAATGGGAT TTTAGTGGAA ATGATTTCAA CTATTTTCCA TTTGGTTCTG 296 GCAGGAGAAT CTGCGCGGGG ATAGTCATGG CAGAGAGGAT TTTCATGTAT TCACTGGCTT 67519 |||| ||||| ||| | |||| |||| ||||| |||||||||| ||||||||| ||||||||| GCAGAAGAAT CTGTGTGGGG ATAGGCATGG CAGAGAGGAT GTTCATGTAT GCACTGGCTT 356 CACTCATTCA TTCTTTCGAC TGGAAATTGC CCGAAGGAGA GACATTAGAC CTTACAGAGA 67579 | |||||||| |||||| || |||||||||| | |||||||| |||| |||| |||||||||| CGCTCATTCA TTCTTTTGAT TGGAAATTGC CTGAAGGAGA GACACCAGAC CTTACAGAGA 416 AGTTTGGGAT TGTTCTGAAG AAAAAAGTAC CTCTGGTGGC TATACCTACT CCCAAGATTT 67639 ||||| || | | ||| | || ||| | | |||||||| | |||||||||| |||||||| TGTTTGATAT TACTTTGAGG AAGAAAATTC CTCTGGTGAC TATACCTACT -CCAAGATTG 475 TTCAATCCGA ACACTGTATG AGTAAGATAA ATATGTGTCT GTAAAGAATC GTGTTCTGTA 67699 | |||||| | ||||| |||| |||||||||| | || | ||| || ||| || || ||||||| TCCAATCC-A ACACTCTATG AGTAAGATAA AGATATATCT GTTGAGAGTC GTCTTCTGTA 534 TGATGATTCT GTCTT 67714 |||||||||| || || TGATGATTCT GTATT 549 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (67160 67714) ******************************************************************************** EST sequence 290 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 65461 to 69981): Exon 1 67358 67604 ( 247 n); cDNA 1 247 ( 247 n); score: 0.911 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.911 247 0.682 C PGS_C08HBa0060C12.1+_SGN-E234103- (67358 67604) Alignment (genomic DNA sequence = upper lines): CTTCTATCTG GAAAAATCCA AGAGAGTTCT GTCCAGAGAG ATTTTTCGAC AATAAATGGG 67417 ||||||| || | |||||||| | |||||| |||||||||| |||||| ||| ||||| |||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATGATAATGG AAATGATGTC AACTACTTCC CATTTGGCTC TGGCAGGAGA ATCTGCGCGG 67477 || ||| ||| ||||||| || ||||| |||| ||||||| || |||||| ||| ||||| |||| ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGTCAT GGCAGAGAGG ATTTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 67537 |||||| ||| |||| ||||| || ||||||| |||||||||| ||||||| | |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCCGAAGGA GAGACATTAG ACCTTACAGA GAAGTTTGGG ATTGTTCTGA 67597 |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| |||||||||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAAAA 67604 |||| || AGAAGAA 247 hqPGS_C08HBa0060C12.1+_SGN-E234103- (67358 67604) ******************************************************************************** EST sequence 300 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 65481 to 69981): Exon 1 67361 67604 ( 244 n); cDNA 1 245 ( 245 n); score: 0.895 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.895 244 0.678 C PGS_C08HBa0060C12.1+_SGN-E234174- (67361 67604) Alignment (genomic DNA sequence = upper lines): CTATCTGGAA AAATCCAAGA GAG-TTCTGT CCAGAGAGAT TTTTCGACAA TAAATGGGAT 67419 |||| ||| | |||||| | ||| ||| || |||||||||| |||| ||||| ||| |||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 GATAATGGAA ATGATGTCAA CTACTTCCCA TTTGGCTCTG GCAGGAGAAT CTGCGCGGGG 67479 ||| ||||| ||||| |||| ||| |||||| ||||| |||| |||| ||||| ||| |||||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGTCATGG CAGAGAGGAT TTTCATGTAT TCACTGGCTT CACTCATTCA TTCTTTCGAC 67539 |||| ||||| |||||||||| ||||||||| |||||||||| ||||| | || |||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CCGAAGGAGA GACATTAGAC CTTACAGAGA AGTTTGGGAT TGTTCTGAAG 67599 |||||||||| | |||||||| |||||||| | || ||||||| |||||||||| |||||||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAAAA 67604 || || AAGAA 245 hqPGS_C08HBa0060C12.1+_SGN-E234174- (67361 67604) ******************************************************************************** EST sequence 140 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 65503 to 68831): Exon 1 67426 67660 ( 235 n); cDNA 1 233 ( 233 n); score: 0.889 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.889 235 0.887 C PGS_C08HBa0060C12.1+_SGN-E243190+ (67426 67660) Alignment (genomic DNA sequence = upper lines): GGAAATGATG TCAACTACTT CCCATTTGGC TCTGGCAGGA GAATCTGCGC GGGGATAGTC 67485 ||||||||| ||||||| | ||||||||| ||||| || | || | ||||| |||||||| | GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATTTTCAT GTATTCACTG GCTTCACTCA TTCATTCTTT CGACTGGAAA 67545 |||||||||| |||| ||||| ||||||||| ||||| |||| |||||||||| |||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCCGAAG GAGAGACATT AGACCTTACA GAGAAGTTTG GGATTGTTCT GAAGAAAAAA 67605 ||||| |||| ||||||| || |||||| ||| |||||||||| |||||||||| |||||| ||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 GTACCTCTGG TGGCTATACC TACTCCCAAG ATTTTTCAAT CCGAACACTG TATGA 67660 | ||||||| |||||||||| |||| ||||| ||| | || || || ||| ||||| ATGCCTCTGG TGGCTATACC TACT-CCAAG ATTGTCTGAT CC-AATACTC TATGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (67426 67660) ******************************************************************************** EST sequence 6 +strand 701 n (File: SGN-E578389+) 1 GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 61 CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 121 TATACAATTG TAGTTAAATA GGATAGCGAA TTATACAATT GCAGCGAAAT AGGCCAGCGA 181 ATTATACAAT TTAGGTCAGC GAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 241 CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 301 TTAATTAAAG AGTCAATAAA ATAGCGGTCT AATCAAGTCC TAAGCAGCCC AAGGTTTGAC 361 CCGTCAACCC AAAAATGAAT AATATTATGG GAAAAGGGTA TGATATACCC CTCAACTTTG 421 TCATTTGAAA CTGATATACC CCTCGTTATG AAAGTGGCTC ATATATACCC TTACCGTTAT 481 ACAAATGGTT CACATATACC TCTGCCGTTA CAAAATGAGC TCATATATAC CCTTCATTTA 541 ACGAAAGTGA AAAAATTACT TTTAAATTTA TAATTTTACT TTAATTTTAA AAAAAAATAT 601 ATTTAGGGGC ATATATGATT CTTTTTTCAA AGTTCAAGGT ATATTTCAAA TTTTTTTAAT 661 ACATAAATTA TTTTTTTGAC TTATTTATTA TAATTATTTG A Predicted gene structure (within gDNA segment 67509 to 73589): Exon 1 68571 68630 ( 60 n); cDNA 84 140 ( 57 n); score: 0.783 Intron 1 68631 68782 ( 152 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.92) Exon 2 68783 68836 ( 54 n); cDNA 141 194 ( 54 n); score: 0.926 Intron 2 68837 68866 ( 30 n); Pd: 0.864 (s: 0.96), Pa: 0.000 (s: 0.74) ?? Exon 3 68867 69009 ( 143 n); cDNA 195 340 ( 146 n); score: 0.745 MATCH C08HBa0060C12.1+ SGN-E578389+ 0.792 257 0.367 C PGS_C08HBa0060C12.1+_SGN-E578389+ (68571 68630,68783 68836,68867 69009) Alignment (genomic DNA sequence = upper lines): ATTTTACTTC AAATATTGCA GAGAAAAATG CCAAAGAATT ATACAATTGT GAATTATATA 68630 |||||| | ||||||||| | |||| | | | | ||||| |||||||||| | ||| ||| ATTTTA-TAA TAATATTGCA GCGAAATAGG C-AGCGAATT ATACAATTGT -AGTTAAATA 140 ATTGCAGTGA AATACAGTTT TTTCTAGCTT TATACAACAG AAGTGTATAT CTTGTGTTTC 68690 .......... .......... .......... .......... .......... .......... 140 TGTTTTTGTA TAAAGCGAGA AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA 68750 .......... .......... .......... .......... .......... .......... 140 TATACATACA TTTTAATTCG ATTCAACTGT ATGCAAAGCT AATTATACAA TTGCAGGGAA 68810 | | ||| |||||||||| |||||| ||| .......... .......... .......... ..GGATAGCG AATTATACAA TTGCAGCGAA 168 ATAGGCCAGC GAATTATACA ATTTAGGCCA GCGAATTATA CACTTGTATA TGTATAG--- 68867 |||||||||| |||||||||| |||||| | ATAGGCCAGC GAATTATACA ATTTAG.... .......... .......... ......GTCA 198 -CGAATTATA CAGTTTTTAT GTTTGCTATG GAGCGCAATT ATGCAAAGTT TGCTATAGCA 68926 ||||||||| || |||||| |||||||||| |||||||||| ||||||| || || ||||||| GCGAATTATA CA-ATTTTAT GTTTGCTATG GAGCGCAATT ATGCAAACTT TGTTATAGCA 257 TACAACTATG AATTTTTTGT TTGCTATATG TGAAAGTTGC CCA-AAATTG AATGATGAAC 68985 ||||| |||| |||||||||| ||| |||||| |||||||||| ||| |||| || | || TACAAATATG AATTTTTTGT TTGTTATATG TGAAAGTTGC CCATTAATTA AAGAGTCAAT 317 AAAATGCCAA ATTTGGTCCG TTCC 69009 ||||| | | | || ||| AAAATAGC-G GTCTAATCAA GTCC 340 hqPGS_C08HBa0060C12.1+_SGN-E578389+ (68571 68630,68783 68836,68867 69009) ******************************************************************************** EST sequence 49 +strand 680 n (File: SGN-E379427+) 1 ACTTCAAATA TTGTTCAGAA AAAGGGCAAC GAATTATACA ATTGTGAATT ATATAATTGC 61 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 121 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 181 ACATACATTT TAATTCGATT CAACGGTATG CAAAGCAAAT TTATAAAAAT ATTGCAGCGA 241 AATAAGCAGC GATTTATACG ATTGTGCATT ACACAATCGC AGTGAATGAA GATAGCGAAT 301 TATACAATTG CAGCGAAATA GGCCATCAAA TTATACAATT TAGGCCAGCG AATTATACAA 361 TTGTATATGT ATAGCGAATT ATACAGTTTT ATGTTTGCTA TGGAGCGCAA TTATGCAAAC 421 TTTGTTATAA CATACAAATA TGAATTTTTT ATTTGCTATA CGTGAAAGTT GCCCTTAATT 481 AAATGCTCCA CAGTCTATAC GAATATTTCC ATTCTTACCC GTCTTCACAC CAACTCGGCC 541 CAATTTAGTC ATCGCATTAA CAAATGCGGT TTCAAAAACT TTAGAATTAC TGGCCCACAA 601 ATTAACAGTA CCTTTAGACC TTTGGTCTGT GAACAAAACT TGATCTGATG TGAATAGGCC 661 CATTCCGTTT TGCAAGTTTT Predicted gene structure (within gDNA segment 67706 to 72133): Exon 1 68581 68651 ( 71 n); cDNA 227 295 ( 69 n); score: 0.746 Intron 1 68652 68788 ( 137 n); Pd: 0.000 (s: 0.70), Pa: 0.673 (s: 0.92) Exon 2 68789 69008 ( 220 n); cDNA 296 514 ( 219 n); score: 0.861 MATCH C08HBa0060C12.1+ SGN-E379427+ 0.833 291 0.428 C PGS_C08HBa0060C12.1+_SGN-E379427+ (68581 68651,68789 69008) Alignment (genomic DNA sequence = upper lines): AAATATTGCA GAGAAAAATG CCAAAGAATT ATACAATTGT GAATTATATA ATTGCAGTGA 68640 |||||||||| | |||| | | | | || || |||| ||||| | |||| | | || |||||| AAATATTGCA GCGAAATAAG C-AGCGATTT ATACGATTGT GCATTACACA ATCGCAGTG- 284 AATACAGTTT TTTCTAGCTT TATACAACAG AAGTGTATAT CTTGTGTTTC TGTTTTTGTA 68700 ||| || | AATGAAGATA G......... .......... .......... .......... .......... 295 TAAAGCGAGA AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA TATACATACA 68760 .......... .......... .......... .......... .......... .......... 295 TTTTAATTCG ATTCAACTGT ATGCAAAGCT AATTATACAA TTGCAGGGAA ATAGGCCAGC 68820 | |||||||||| |||||| ||| |||||||| | .......... .......... ........CG AATTATACAA TTGCAGCGAA ATAGGCCATC 327 GAATTATACA ATTTAGGCCA GCGAATTATA CACTTGTATA TGTATAGCGA ATTATACAGT 68880 ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||||||| AAATTATACA ATTTAGGCCA GCGAATTATA CAATTGTATA TGTATAGCGA ATTATACAG- 386 TTTTATGTTT GCTATGGAGC GCAATTATGC AAAGTTTGCT ATAGCATACA ACTATGAATT 68940 |||||||||| |||||||||| |||||||||| ||| |||| | ||| |||||| | |||||||| TTTTATGTTT GCTATGGAGC GCAATTATGC AAACTTTGTT ATAACATACA AATATGAATT 446 TTTTGTTTGC TATATGTGAA AGTTGCCCAA AATTGAATGA TGAACAAAAT -GCCAAATTT 68999 |||| ||||| |||| ||||| |||||||| |||| |||| | ||| | | ||| | TTTTATTTGC TATACGTGAA AGTTGCCCTT AATTAAATGC TCCACAGTCT ATACGAATAT 506 GGTCCGTTC 69008 ||| ||| -TTCCATTC 514 hqPGS_C08HBa0060C12.1+_SGN-E379427+ (68581 68651,68789 69008) ******************************************************************************** EST sequence 283 +strand 666 n (File: SGN-E371327+) 1 TTTTTTTTTA GGCAGCGAAT TATACAATTG TGCATTATAC AATTGCAGTG AAATAGGATA 61 GCGAATTATA CAATTGTATA TGTATAGCGA ATTATACAAT TTTATGTTTG CTATGGAACG 121 CAATTATGCG AAGTTTGCTA TAGCATACAA ATATGAATTT TTTGTTTGCT GTATGTGAAA 181 AAAGTTGCCC AAAAATAAAT GAGAGTTAGA TTTAAATGAA ATGGACACAT TGATTTCTCG 241 TCTAAAAGCA TTAAAGGTGG TTGATTCTTA CTCGACTAAG TGCAGTAGCT TCCCCAAGTC 301 CATATAACGA ATCAATCAAC AGTGTCCGCA GTGAAGCTGG ACCTCTAGCC ATGTCCATCC 361 CTGTTTCACT TGCGACACCA AATATAGCCA ATGCAGAAGC TGTTGCTTCC ACAGCATGGG 421 ATGGATCAAC AGCGACAAAG GCAGCAATGA GGGCAGTGAC TGAACATCCA GATGCAGTAA 481 TCTTTTGCAA CATAGGCACC CCATTGTGAA CACAAACAAC CCTATCACCG TCTGTGATAT 541 AGTCAACAGC TCCAGAAACA GCGACTACAC TACCACTTTG TTGAGCGATG GACTTAGCAG 601 CTTCAACAGC ATCACTTGAA CCATGTACAC TATCCACACC CTTGGAATTT GAGTCAACAC 661 AACCCT Predicted gene structure (within gDNA segment 67524 to 74521): Exon 1 68607 68643 ( 37 n); cDNA 18 54 ( 37 n); score: 0.946 Intron 1 68644 68834 ( 191 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 68835 68961 ( 127 n); cDNA 55 180 ( 126 n); score: 0.929 Intron 2 68962 72180 (3219 n); Pd: 0.000 (s: 0.96), Pa: 0.619 (s: 0) Exon 3 72181 72198 ( 18 n); cDNA 181 198 ( 18 n); score: 0.667 Intron 3 72199 73412 (1214 n); Pd: 0.000 (s: 0), Pa: 0.334 (s: 0) Exon 4 73413 73428 ( 16 n); cDNA 199 214 ( 16 n); score: 0.688 MATCH C08HBa0060C12.1+ SGN-E371327+ 0.929 198 0.297 C PGS_C08HBa0060C12.1+_SGN-E371327+ (68607 68643,68835 68961,72181 72198,73413 73428) Alignment (genomic DNA sequence = upper lines): AATTATACAA TTGTGAATTA TATAATTGCA GTGAAATACA GTTTTTTCTA GCTTTATACA 68666 |||||||||| ||||| |||| || ||||||| ||||||| AATTATACAA TTGTGCATTA TACAATTGCA GTGAAAT... .......... .......... 54 ACAGAAGTGT ATATCTTGTG TTTCTGTTTT TGTATAAAGC GAGAAAAACA TATATCTTCT 68726 .......... .......... .......... .......... .......... .......... 54 TGCTATACAC TTATAATTAT GCAATATACA TACATTTTAA TTCGATTCAA CTGTATGCAA 68786 .......... .......... .......... .......... .......... .......... 54 AGCTAATTAT ACAATTGCAG GGAAATAGGC CAGCGAATTA TACAATTTAG GCCAGCGAAT 68846 || | ||||||| .......... .......... .......... .......... ........AG GATAGCGAAT 66 TATACACTTG TATATGTATA GCGAATTATA CAGTTTTTAT GTTTGCTATG GAGCGCAATT 68906 |||||| ||| |||||||||| |||||||||| || || |||| |||||||||| || ||||||| TATACAATTG TATATGTATA GCGAATTATA CAATT-TTAT GTTTGCTATG GAACGCAATT 125 ATGCAAAGTT TGCTATAGCA TACAACTATG AATTTTTTGT TTGCTATATG TGAAAGTTGC 68966 |||| ||||| |||||||||| ||||| |||| |||||||||| ||||| |||| ||||| ATGCGAAGTT TGCTATAGCA TACAAATATG AATTTTTTGT TTGCTGTATG TGAAA..... 180 CCAAAATTGA ATGATGAACA AAATGCCAAA TTTGGTCCGT TCCAAGTAAC ATCACGAGTT 69026 .......... .......... .......... .......... .......... .......... 180 TCAGGAGGTG TCTGCTTCGT TTTGGTCTAT TTATATTCAT TTCATTCTTT CAGAAAAATA 69086 .......... .......... .......... .......... .......... .......... 180 AAAACAAAAA AAAATCTTTT AGCTTGAGAT GTCTCTCGAA TTCTTCAAAC CCCGTTTTGA 69146 .......... .......... .......... .......... .......... .......... 180 TTCTTTCCCA TGGCCTCTTC AACAACTCAA TGTTGAGCAA AAGGGTGTGT TTTTCTCCTG 69206 .......... .......... .......... .......... .......... .......... 180 TTTTCTTGGG TTTTTAGCTT TGCTTTGGTT TTTTATCAGA AACTCAATCA AGGGATTGCC 69266 .......... .......... .......... .......... .......... .......... 180 ACCAGGGCCT AAAGCTTTGC CCTTGATAGG TAATCTTCAT TCTCTTGATC CTCAACTTCA 69326 .......... .......... .......... .......... .......... .......... 180 CACCTATTTT GCATCTCTGT CCCAAACTTA TGGCCCCATT TGTAGAATCT GGCTTGGTAA 69386 .......... .......... .......... .......... .......... .......... 180 AAAACTTGGA ATTATTATTA CTTCTCCTGC TTTAGCTCGC GAGGTTCTTA AGGATAAAGA 69446 .......... .......... .......... .......... .......... .......... 180 TACCATTTTT GCTAACAGAG ATGTCCCTGC TGCTGGAAGC GAATTTTCAT ATGGTGGCAA 69506 .......... .......... .......... .......... .......... .......... 180 AAACATACTT TGGACTCCTT ATGGACCGAA ATGGCGCATG TTGAGGAAAA TTTGTGTTCG 69566 .......... .......... .......... .......... .......... .......... 180 CGATATGCTT AGTTCTTCTA CTTTAGATTC GGTGTATGCA CTAAGGAGAA GGGAGGTTAG 69626 .......... .......... .......... .......... .......... .......... 180 ACAATCGATC AATTACTTGT ATAGTCAGAA GGGTTTACCA GTGAATGTTG GTGAACAGAC 69686 .......... .......... .......... .......... .......... .......... 180 GTTCTTGACT ATTCTTAATG TGATTACAAG CATGTTATGG GGTGGTACAG TGAAGGGTGA 69746 .......... .......... .......... .......... .......... .......... 180 GGAAAGAGCT AGTATTGGAG CGGAGTTTAG GCATGTTGTG ACTGGGATAG CTCAGTTGGT 69806 .......... .......... .......... .......... .......... .......... 180 CAGTATTCCC AATCTTTCCG ATTTTTACCC AGGCTTGGCT TGGTTTGATT TCCAGGGTGT 69866 .......... .......... .......... .......... .......... .......... 180 TATAAAGAAG ATGAAGGTGT TGGCAAAGCG ATTTGATAAG ATATTTGAGA GCATGATTGA 69926 .......... .......... .......... .......... .......... .......... 180 TCAAAGACAA AAATTGGACA GAAATGGTGT TGGCCAAGAA ATCAAAGACT TTTTGCAAGT 69986 .......... .......... .......... .......... .......... .......... 180 TTTGCTAAAG TTGAAAGATG AAGCAGATCC CGAAATGCCT CTGACCATGA CTGAAATCAA 70046 .......... .......... .......... .......... .......... .......... 180 AGCCTTACTT ATGGTATGTT TATCAATTGT GCATTCTACT AAATATTCAT AACTGCATTA 70106 .......... .......... .......... .......... .......... .......... 180 TTATTGAGCA GCCAAGATTG CATTTGTCTT TCACCATTCA CACTGGCTTA CACTGATCAT 70166 .......... .......... .......... .......... .......... .......... 180 GATGGCAGAT CTTTTCTTTT TTTATATTAA AAGGATCAAA TGCCATATAA GTTCATATTA 70226 .......... .......... .......... .......... .......... .......... 180 GGATTGTAAA TGTATTGAGT AATAAATATT ATATTAATAC GTTCATGTCC TGAACAGTTA 70286 .......... .......... .......... .......... .......... .......... 180 ATTGCTACCC TGTTATGGAC TGGATTAAAG AAAGAGTCGG CTTATTTAGG ATCAGATTAT 70346 .......... .......... .......... .......... .......... .......... 180 ATGTGAGACT TTACTGTGAA TTAAGACGCT GAGTCTTGAA CTTAACTCCA ATATACAGTT 70406 .......... .......... .......... .......... .......... .......... 180 TGTTGTAACA TGATAATAAC TTCAAAAGTA CTATGGACAG GAAATGGTTC TTGGTGGAAC 70466 .......... .......... .......... .......... .......... .......... 180 TGACACTTCC GTCAACACAA TTGAGTTTGT CATGGCTGAA ATTATGCATA AACCGGATAT 70526 .......... .......... .......... .......... .......... .......... 180 CCTGAGGAAA TTACAACAAG AAGTAGATAC AGTTGTGGGA AAAAATAATA TTGTGGAAGA 70586 .......... .......... .......... .......... .......... .......... 180 GTCTCATATT CAGAAATTAC CATATCTCAA TGCAGTGATG AAAGAAGTGT TGCGCCTACA 70646 .......... .......... .......... .......... .......... .......... 180 TCCAGCTGCT CCACTACTGA TACCACATTG TCCTAGTGAA ACATGCACTG TGGGAGGTTA 70706 .......... .......... .......... .......... .......... .......... 180 CACTGTTCCT AAAGGATCTT GTATTTTCAT AAATGTTTGG GCTATACACA GAGATGCTTC 70766 .......... .......... .......... .......... .......... .......... 180 TATCTGGAAA AATCCAACAG AGTTCCGTCC AGAGAGGTTT TTGGACAATA AATGGGATTA 70826 .......... .......... .......... .......... .......... .......... 180 TAGCGGAAAA GATTTGAACT ATTTCCCATT TGGTTCTGGA AGAAGAATCT GTGCAGGGAT 70886 .......... .......... .......... .......... .......... .......... 180 AGGCATGGCA GAGAGGATGT TCATGTATTC ACTGGCTTCA CTCGTTCATT CTTTTGATTG 70946 .......... .......... .......... .......... .......... .......... 180 GAAATTGCCC CAAGGAGTGA CATCAGACGT TACAGAGACG TTTGGTCTTA ATTTGAGGAA 71006 .......... .......... .......... .......... .......... .......... 180 AAAAATTCCT CTGGTGGCTA TACCTACTCC AAGATTGTCC AATCCAACAC TGTATGAGTA 71066 .......... .......... .......... .......... .......... .......... 180 AGATAAAAAT GTATCTGTTG AGAGTCGTGT TCCGTATGAT GATTCTGTCT TTTGTATGAT 71126 .......... .......... .......... .......... .......... .......... 180 GAATTATGGA AATTAATTTG AACTTTCTAT GCAGTAAAAG GAACCATTAT TATATTCTCT 71186 .......... .......... .......... .......... .......... .......... 180 CTTAGTGAAA GTTCTCTCAA GGAAGAATTC AGGTTTCCTC ATGGCTAGAG ATGAGGTTCA 71246 .......... .......... .......... .......... .......... .......... 180 TGTTTTTTTC TTTCCTTAAC CCTTAACTAA ACACATCAAC TCTCGAAACT AAGCATTTTC 71306 .......... .......... .......... .......... .......... .......... 180 TTTCTAAATA TAATATTTGG ACTTCTCAAA AAGCTCAATA TCCAACGAGA TACTTTAATT 71366 .......... .......... .......... .......... .......... .......... 180 TTTGTCTCTC CGAATAAAAG AAAAAAACAC TACGGGAACA GTCCCCATAT TGGTATATCA 71426 .......... .......... .......... .......... .......... .......... 180 TATAGGTGAA TCTTTTTACT AGGGGCTCTG TTCCAGCTAA ATGAAATGAT TAATAGTCAC 71486 .......... .......... .......... .......... .......... .......... 180 ACAGATGTCT AAAATTTGGT TTTATACCAC AAGTTTCAAA GTCTTTTCTT TTTTCCTGAA 71546 .......... .......... .......... .......... .......... .......... 180 CTTCGTGTCA TAAATTGAGA CGCAGGGAGT GAAAGTCACT TTCTTTGGAT GTGAATTGGT 71606 .......... .......... .......... .......... .......... .......... 180 TTGTCCCTTC TAACTTGTAA CAGTTCTATG TAAGCAAATA ACCTTTCTTT TCCTTTGTTC 71666 .......... .......... .......... .......... .......... .......... 180 AAAGTTCAAA TCTATTTTTT TAGTTACTAC TGCATTATTG CTGAGAAGAG GAGATTGCAT 71726 .......... .......... .......... .......... .......... .......... 180 TTACCTGTTC TTTATCTTCT AGACTTTTTA GAAATGCCGC ATTGTGTGTG TCAGATCTTG 71786 .......... .......... .......... .......... .......... .......... 180 TAAAAATAGT ACGAAGACTC TCGAGCATGA GTTTTTCTGG GCTAAAATGG CCCTTATGGT 71846 .......... .......... .......... .......... .......... .......... 180 ATGTTATGTC ACTTTCGATG TGATATTGGT TGTTCCCTTC GGTTGGGAAA TGCGGATAAT 71906 .......... .......... .......... .......... .......... .......... 180 ATAATGTATT GAATTTCCTA CCATTTAAAT TAATTAAAAA AAGTTCCTTT TTCCGTCTCT 71966 .......... .......... .......... .......... .......... .......... 180 CTCTATTAAC CTTCGGATAC ATCTCTCTAC CTCTCCCCAT ATGGCGCTTA AATCCCCCCA 72026 .......... .......... .......... .......... .......... .......... 180 AAATCACGCC TATAACTTAA CAATGAATCA TCGATTCGTT CCAACTTAAC ATTTATGAAT 72086 .......... .......... .......... .......... .......... .......... 180 TACAATCGTA TTATTCTTGA ACTTATCATC AATTTCAAAT TTTAAAAAAA GTAAAAAAAA 72146 .......... .......... .......... .......... .......... .......... 180 TTATTCATCA TCTATTTTGC TTTTAATATA TCAGAATTTT GCATCAAAAT AGTTCAATTT 72206 || || || ||||| | .......... .......... .......... ....AAAGTT GCCCAAAAAT AA........ 198 AGCGATAAAT GTGGGTTCAC TACCATCATT TAGAATTGTC TTACTCAATT AGTTCTTCAA 72266 .......... .......... .......... .......... .......... .......... 198 TGGAACATCT TGTTCCCTAG TGAGTTTGAT TCGAATAATG ATGATTTTGC TGAAAATAGA 72326 .......... .......... .......... .......... .......... .......... 198 TCCAAACACC AGAAAGATCC TTTAATGATG AAGAAATTGT GGGCGGAAAT ATTTTGAAAA 72386 .......... .......... .......... .......... .......... .......... 198 TTCAACGGTC AAATTTCTAA TGTATATGGT CGATATTGTG TATTTACTTT GTATCATATT 72446 .......... .......... .......... .......... .......... .......... 198 TATTGATCAA TAAACGGAAC AAAAAATATA TTGAGTTATT GCTATTGGGT TATTAGGTTG 72506 .......... .......... .......... .......... .......... .......... 198 GCGGGTTTTA GATAGTTTTT TTCAAAAAAA AAAATTATTA GGTTATCGAT TTGGTATCGA 72566 .......... .......... .......... .......... .......... .......... 198 TTTTTAGTAT TAGATAAATT GATAACCCAT TAAGACGATA ATAATTTACT ACTATACCCT 72626 .......... .......... .......... .......... .......... .......... 198 TCATAAATAT CAAATATTAA TAACTTAACA GAACTAGACA CTATATCAGT ACTCTACACT 72686 .......... .......... .......... .......... .......... .......... 198 ACGATCTATA CACTTCACAT TACTTCCACT TCACATAAAA AAAATCATAT TATGTTTTGG 72746 .......... .......... .......... .......... .......... .......... 198 TTGTAACATG TAATTGTAGC CTCCAACTGT ATCTACTCTT ATTGATGTAA TTTTTCATTA 72806 .......... .......... .......... .......... .......... .......... 198 TATTTCTTGT TTCACTATAT CAAAGCATTA ACATCTGATT TGTTAGTCTC ACTGTATCGC 72866 .......... .......... .......... .......... .......... .......... 198 GCTAAATTGT TAGAGAAGTA AGAAAATCAT ATATTTATTT TATTAGCATT TTCTTATTAG 72926 .......... .......... .......... .......... .......... .......... 198 GTAAACCGAA AACCAAACCG TTAATGACCA AAAATCGATA AATAGAAAAC CAAAGAATAT 72986 .......... .......... .......... .......... .......... .......... 198 CTTATTTGTT AGAATATGTG TGTCCACTAC CAGTCAACGG ACCAGGTCCC TTGACACAAT 73046 .......... .......... .......... .......... .......... .......... 198 AAGAACAGTG CGTAAGATTA AACAATATGA AGAACACAAC ACAAGCAGTT TACGTGGAAA 73106 .......... .......... .......... .......... .......... .......... 198 CCTCCTTGCT CAAGGGAGTA AAACCACGAC CTATTGCACA AGATTTACAA CCGTCTTCAC 73166 .......... .......... .......... .......... .......... .......... 198 TAATCTTCTC AAGCAAAAGT GAAACCCGGT TACAATCAAT GTGAGAAAAA GTTATTAATC 73226 .......... .......... .......... .......... .......... .......... 198 TCACGATCAA GTAATCTACC TGTTACTTGA AGAGCCTAAG CGGATACCAC ACCGCCCACT 73286 .......... .......... .......... .......... .......... .......... 198 AAACCACCTA ACTCTAGATG ACTTAGAATT TGACTAAGCA ACAAACAAAT GTTGCCCACT 73346 .......... .......... .......... .......... .......... .......... 198 AAATCAGTTA ACCTTAACTG ATTTAGACTT TTACAAACCC AAAACAAATA TCTGAATCCT 73406 .......... .......... .......... .......... .......... .......... 198 TTATAGATTA GGAACAGATT TA 73428 || | | ||||| || ......ATGA GAGTTAGATT TA 214 hqPGS_C08HBa0060C12.1+_SGN-E371327+ (68607 68643,68835 68961) ******************************************************************************** EST sequence 21 +strand 750 n (File: SGN-E379112+) 1 TGTGGGAATA TATATATATA TATATTCCGT TAATTAGACG AAATTGAGAA GCTGAAATCT 61 CACCTATAAC ATCAAGTATA CACGTTACCT ATGCCCTGGT TGTTTATAGC TGAATTTCAA 121 GCCCCTTTTC TTATTCTATT ATTACACCCC TAATGAAATG ATTAAGGAAC TTATTAAAGC 181 AAAACAACTA AATTCTTATT TTGCAATCTT TTCTTGTCAT TCACAAGCGA TAATTCTAAA 241 TCTTTTTCCT TCTCTCCATT TTATACAAGC TCTTGGGAAA ATTGTATATA ATAGCAAACT 301 AGTAATCTAA CTAAATGGAG TAGCTAGAGT TTGATTTAAT TGTGCTCCAT AGCAAACGTT 361 AGCTAAAGTT TGTCAGGCGT CTCCCTCCCA AAAATCTCGC TCGCCACTCT CCATTCTCGC 421 TCGCCTATCT CGCTATATAC ACAGAAGTGT ATAAATTCTG TTTCTATTTT GTATAAAGCG 481 AGAGAAAATT GTATATACAC ATGTAAAAAT ATATATCTTC GTGTTATACA CTTAATTATA 541 CAAATTACAA ACATTTTACT TCAAATATTG CAGAGAAAAA GGCCAACGAA TTATACAATT 601 GTGAATTATA TAATTGCAGT GAAATACAAT TTTCTCTAAC TTTATACAAC AGAAGTGTAT 661 ATATTGTGNT TTTTGTTTTT GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA 721 CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 62904 to 69375): Exon 1 64021 64058 ( 38 n); cDNA 240 274 ( 35 n); score: 0.684 Intron 1 64059 68294 (4236 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 68295 68765 ( 471 n); cDNA 275 750 ( 476 n); score: 0.892 MATCH C08HBa0060C12.1+ SGN-E379112+ 0.892 509 0.679 C PGS_C08HBa0060C12.1+_SGN-E379112+ (64021 64058,68295 68765) Alignment (genomic DNA sequence = upper lines): ATGTTTTTGA CTGCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 64080 || ||||| || | || | | | | |||| ||| | || ATCTTTTT-C CTTCTCTCCA TTTTA-TACA AGC-TCTT.. .......... .......... 274 GAGGAAAGAG CTACTCTTGG GGCAGAGGTT AGGGATGTTG TGACTAAGAT GAATGAGCTG 64140 .......... .......... .......... .......... .......... .......... 274 TTAGTTACTC CAAATCTTTC CGATTTTTAC CCGGGGTTGG CCTGGTTTGA TTTGCAGGGT 64200 .......... .......... .......... .......... .......... .......... 274 GTTAAAAAGA AGATGAAAGT GTTGGCAAAG AGATATGATA ACATATTTGA GAGCATGATT 64260 .......... .......... .......... .......... .......... .......... 274 GATCAAAGAC AAAAAATGAA TAGAAATGGG GTTGGCCAAG AAAGCAAGGA CTTTTTGCAA 64320 .......... .......... .......... .......... .......... .......... 274 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT CCCAAAATGC CTCTGACCAT GACTGAACTC 64380 .......... .......... .......... .......... .......... .......... 274 AAAGCCTTAC TTACGGTATG TTTTATTAAT TGTGCATTCA AATTTGCTGC TTACACTATA 64440 .......... .......... .......... .......... .......... .......... 274 TTTTCATAAA TAAAAAATCG TTGTGCATGA TAATAACTTC ACTAATACTA TGGACAGGAT 64500 .......... .......... .......... .......... .......... .......... 274 ATGGTTGTTG GTGGAACTGA AACTAGTGCC AACACAGTTG AGTTTGCCAT GACTGAAATT 64560 .......... .......... .......... .......... .......... .......... 274 ATGAACAAAC CAGACGTCTT GAGGAAATTA CAACAAGAAG TGGATACAGT TGTGGGAAAA 64620 .......... .......... .......... .......... .......... .......... 274 GATAACATAG TGGAAGAGTC TCATATACAA CACTTGCCGT ATTTGTATGC AGTTATGAAA 64680 .......... .......... .......... .......... .......... .......... 274 GAAGTCTTGC GTCTATATCC AGCTGTCCCA CTCTTGGTGC CTCATTGTCC TAGTGAGACA 64740 .......... .......... .......... .......... .......... .......... 274 GTCACTGTTG GAGGATATGC TGTTCCTAAA GGATCTAGTG TTTTCGTAAA CGTATGGGCT 64800 .......... .......... .......... .......... .......... .......... 274 ATACATCGAG ATCCTTCTAT TTGGGAAAAT CCAACTGAGT TCCATCCGGA AAGATTTATG 64860 .......... .......... .......... .......... .......... .......... 274 GAGAATAAAT GGGACTTCAG TGGAAATGAT TTGACCTACT TCCCGTTTGG TTCTGGCAGA 64920 .......... .......... .......... .......... .......... .......... 274 AGAATCTGTG TGGGGTTAGC CATGGCAGAG AGGATGTTCA TGTATTCACT GGCTTCACTT 64980 .......... .......... .......... .......... .......... .......... 274 ATTCATTCTT TTGACTGGAA ATTGCCTGAA GGAGAGACAT TAGACTTTAC AGAGAAGTTT 65040 .......... .......... .......... .......... .......... .......... 274 GTGCTCGTTC TGAAGAAGAA AATGCCTCTG GTGGCTATAC CTACTCCAAG ATTATCCAAT 65100 .......... .......... .......... .......... .......... .......... 274 CCAACACTCT ATGAGTAAGA TAGAAATATG TCTGTAAAGA GTCGCTTCTG CATGGTGATT 65160 .......... .......... .......... .......... .......... .......... 274 TTATCTTTTG TGTGATGAAC TATGGAAATG TGATCAATGA AAGATGTTGC TCTATCCTGG 65220 .......... .......... .......... .......... .......... .......... 274 CAATGGTCTT ATGAGCAACT CAATGTTCCA TGTGAAATGC CTAGTTTCCA TGACTTCTTA 65280 .......... .......... .......... .......... .......... .......... 274 AATATTGTAT TCTGAATCGA ATTTGAAATA ATAGTACATG TATGACTTTA TTGTAGAGAT 65340 .......... .......... .......... .......... .......... .......... 274 TATGCTTCTA TCTTTTGTTT GATGAACTAT ATATGGAGAT ATAATACTTA AATTTACAAG 65400 .......... .......... .......... .......... .......... .......... 274 GGCAATTATT ATTACTAAGC AAAACCTGGA GCAAGATGTG TGAAATTATT TCTAAAAGCT 65460 .......... .......... .......... .......... .......... .......... 274 ATGACATCCT GAAAAGGATT TTAAAGAGCA TATTTGTGCT CAATATATAC CTAATTTAAT 65520 .......... .......... .......... .......... .......... .......... 274 ACTATTTTCT TATTTGTCTT GTGAACAGGA CAGACAAGGT ATCAAAAAGT GAAGATTCAT 65580 .......... .......... .......... .......... .......... .......... 274 TTGTGTTAAA CAACAAGGGG CCATTGACTT CATCACTAAA TATAAATGTT GAAGTGGAAA 65640 .......... .......... .......... .......... .......... .......... 274 ATGGCTTCCC ACCACACTGT TTCTGCCATT TCTCTCATTT TTCTCTTAGG CTGATATAAT 65700 .......... .......... .......... .......... .......... .......... 274 GTCACTAAAA TTCTTCAAAC CTTTGTGTGA TTCTTTCCCA TGGCCCTGGC AAGAACAAAA 65760 .......... .......... .......... .......... .......... .......... 274 TATTGAGAAA AGTGGTGTAT TTTTCTCCTA TGTTCTTGGC AGTTTAGCTT TAATATGGTT 65820 .......... .......... .......... .......... .......... .......... 274 TCTTTGTTTT TACATCAACA AGTCAAAAAA GGGACAACCG CCATTATGGG CCTAAAGCTT 65880 .......... .......... .......... .......... .......... .......... 274 TGCCTTTGCT AGGTAATCTC CACTCTCTTG ATCCCCAACT TCACACCTAT TTTGCATCTC 65940 .......... .......... .......... .......... .......... .......... 274 TTTCCCAAAC TTATGGGCCC ATTTGTAGAC TCTGGCTTGG TTACTTCACC TGCCTTAGCT 66000 .......... .......... .......... .......... .......... .......... 274 TGCGAGGTGC TTAAGAATCA AGATACCATT TTTGCTAACA GAGATGTACC TGCTGCTTGT 66060 .......... .......... .......... .......... .......... .......... 274 AAAGAATCTT CATATGGTGG AAAGGACATA GTTTGGAATC CTTACGGACC GAAATGGCGT 66120 .......... .......... .......... .......... .......... .......... 274 ATGTTTATTG GTTCAACTTT AGATTCTGTT TATGCACTAA GGAAAAGGGA GCTTAGCAAT 66180 .......... .......... .......... .......... .......... .......... 274 CGATCAATTA CTTTTATAAT CAGGCGGGAT CGCCTGTGAA TATTGGTGAA CAGATGTTCT 66240 .......... .......... .......... .......... .......... .......... 274 TGACTGCGCT TAATGTGATA ACAAGCATGT TATGGGGTGG GACAGTGAAG GGTGAGGAAA 66300 .......... .......... .......... .......... .......... .......... 274 GCTCTAGACT TGGAGCAGCA TGTTGTAGCT GATATGACTG AGCTGTTAGG TACTCCAAAT 66360 .......... .......... .......... .......... .......... .......... 274 ATTTCCGATT TTTATCCGGG CTTGGCCAGG TTCAATTTGA AGGGTGTAAC AAAGAAGATG 66420 .......... .......... .......... .......... .......... .......... 274 AATGTATTGG AAAAGAGATA TGATAAGATA TTTGAGAGCA TGATTGATCA AAGACAGAAA 66480 .......... .......... .......... .......... .......... .......... 274 ATGGATTGAA TTGCTGATCA GATGGGAACT GGTGTTGGCC AAGAAAGCAA GGAATTTTTG 66540 .......... .......... .......... .......... .......... .......... 274 CAAGTTTTGC TGAAGTTAAA AGATGAATCA GATGCCAAAA TGCCTCTGAC CATGATTGAA 66600 .......... .......... .......... .......... .......... .......... 274 ATCAAAGCCT TACTTATGGT ATGTTTTATT CGTAAAGTTT TGTCGTGAGC TGAGCTGTTG 66660 .......... .......... .......... .......... .......... .......... 274 TTTCATTCTT CTTCTATGAA AATTCACATT CATTTGATAT GGTGCTGGTT TCAAAGTTTG 66720 .......... .......... .......... .......... .......... .......... 274 CATTTTACTT CAAATAGTCT AATTCCTTAC CTATTACAGA AAAAAAATTT GGTTTGTAGT 66780 .......... .......... .......... .......... .......... .......... 274 GATGTTATTC ATAATAAGAG GATCAATGCA AATAAAAGTG AAATATAGGA TAGTAAATGT 66840 .......... .......... .......... .......... .......... .......... 274 ACTGAAGAAT TATTACATCA GATGAGTAAA ATATATTAGA TGAATCAGGT TTATATTAAT 66900 .......... .......... .......... .......... .......... .......... 274 TCATGTTCTG AACTGTTAAT TGCTACCTTT TTATTGGATT GCATTAAGGA AGACATAACT 66960 .......... .......... .......... .......... .......... .......... 274 GTGAATTAAG GCAGTGAACC ATGAACTGAA ATCCAATATA CAGTATTTGT TAATAACTTC 67020 .......... .......... .......... .......... .......... .......... 274 ACAAATATTG TGGACAGGAT ATGGTGGTTG GTGGAACTGA CACAACCTCC AACGCGGTTT 67080 .......... .......... .......... .......... .......... .......... 274 AGTTTGCCAT GGCTAAAATT ATGAACAAAC CATACGTCCT GAGGAAGTTA CAACAAGAAC 67140 .......... .......... .......... .......... .......... .......... 274 TAGAGGTAGT TGTGGGAAAA GATAATATTG TGAAAGAGTC TCATATTCAG CAATTACCAT 67200 .......... .......... .......... .......... .......... .......... 274 ATAGATCTTT ATGCAGTTGT GAAAGAAGCC TTGCGTTTAC ATCCAACTCT TCCACTCTTG 67260 .......... .......... .......... .......... .......... .......... 274 GTGCCACATT GTCCTAGTGA GACATGTACT GTAGGAGGAT ACACTGTTCC TAATGGATCT 67320 .......... .......... .......... .......... .......... .......... 274 CGTGTTTTCG TAAATGTATG GGCTATACAG AGAGATCCTT CTATCTGGAA AAATCCAAGA 67380 .......... .......... .......... .......... .......... .......... 274 GAGTTCTGTC CAGAGAGATT TTTCGACAAT AAATGGGATG ATAATGGAAA TGATGTCAAC 67440 .......... .......... .......... .......... .......... .......... 274 TACTTCCCAT TTGGCTCTGG CAGGAGAATC TGCGCGGGGA TAGTCATGGC AGAGAGGATT 67500 .......... .......... .......... .......... .......... .......... 274 TTCATGTATT CACTGGCTTC ACTCATTCAT TCTTTCGACT GGAAATTGCC CGAAGGAGAG 67560 .......... .......... .......... .......... .......... .......... 274 ACATTAGACC TTACAGAGAA GTTTGGGATT GTTCTGAAGA AAAAAGTACC TCTGGTGGCT 67620 .......... .......... .......... .......... .......... .......... 274 ATACCTACTC CCAAGATTTT TCAATCCGAA CACTGTATGA GTAAGATAAA TATGTGTCTG 67680 .......... .......... .......... .......... .......... .......... 274 TAAAGAATCG TGTTCTGTAT GATGATTCTG TCTTTGAATG GTGAATTGTG GAAATTGGAT 67740 .......... .......... .......... .......... .......... .......... 274 CCAGTTAGTA CACATTAAGA ATATAAAACA TGTAATTCAA GAGTACCTGA ATTAGCACAT 67800 .......... .......... .......... .......... .......... .......... 274 CAGAATGAAT TTTCTGTTTG TAAGATAAAA GATATTTCCA GTTTTATGTT CAAGTCATAG 67860 .......... .......... .......... .......... .......... .......... 274 TCAGTTATTT ACTATTATTT TGTGATTGAT GAGCAACACT TCAAGGTTAA CCAACAAAAG 67920 .......... .......... .......... .......... .......... .......... 274 TCACATTTCT TCAATGATCC ATCCACCATC AAAATGTTCA TTGACAACTT GTTTACCTCA 67980 .......... .......... .......... .......... .......... .......... 274 CAAATAAATA AATTATCCCA AAAAAGAAAG ATGGTTTAAA ACAAAATTTA ATAAAATAAT 68040 .......... .......... .......... .......... .......... .......... 274 TAAAATGAAA TGTTTTTTTT TAAAAAAAGA AATTACTTTA AAACAAAAAA ATATTTCAAA 68100 .......... .......... .......... .......... .......... .......... 274 ATAATTTAGT GAAAAGGTCC TTTAATTTTT TGGGTGACTT TCTAAATAAT ATATTAAAAA 68160 .......... .......... .......... .......... .......... .......... 274 TAGTTGAGTG ACTTTGAGAT ATAAAAGAAA GTTAAATGAC TTTGTATGAA ATTAGTATTA 68220 .......... .......... .......... .......... .......... .......... 274 GCTGAATGAA GATATAAAAT AAGCAACTCT TAGCAGTCAA AGAAGGAATG CCTTTTTTTT 68280 .......... .......... .......... .......... .......... .......... 274 TGCTGAAAAT TGAAGGGAAA ATTGTATATA ATAGCAAACT AATAATCTAA ATTAAATAGA 68340 |||||| |||||||||| |||||||||| | |||||| | | ||||| || .......... ....GGGAAA ATTGTATATA ATAGCAAACT AGTAATCT-A ACTAAATGGA 319 ATAGCTAGGG TTTGATTTAA TTGTGCTCCA TAGCAAACAT TGGCAAAAAT TTGCCAGGCG 68400 ||||||| | |||||||||| |||||||||| |||||||| | | || ||| | ||| |||||| GTAGCTAGAG TTTGATTTAA TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG 379 TCTCTCTCCC AGAAGTCTCG CTCGCCACTC T-C-TCAT-T CTCGCCTCTC TCGCTTTATA 68457 |||| ||||| | || ||||| |||||||||| | | | | ||||||| || ||||| |||| TCTCCCTCCC AAAAATCTCG CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA 439 CACAGAAGTG TATAATTTCT GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA 68517 |||||||||| ||||| |||| |||||| ||| |||||||||| |||||||||| |||||||||| CACAGAAGTG TATAAATTCT GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA 499 CATGCAAAAA TGTATATCTT TGTGTTATAC GCTTAATTAT ATAATTTACA AACATTTTAC 68577 |||| ||||| | |||||||| ||||||||| ||||||||| | || ||||| |||||||||| CATGTAAAAA TATATATCTT CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC 559 TTCAAATATT GCAGAGAAAA ATGCCAAAGA ATTATACAAT TGTGAATTAT ATAATTGCAG 68637 |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| |||||||||| TTCAAATATT GCAGAGAAAA AGGCCAACGA ATTATACAAT TGTGAATTAT ATAATTGCAG 619 TGAAATACAG TTTTTTCTAG CTTTATACAA CAGAAGTGTA TATCTTGTG- TTTCTGTTTT 68696 ||||||||| |||| |||| |||||||||| |||||||||| ||| ||||| ||| |||||| TGAAATACAA TTTTCTCTAA CTTTATACAA CAGAAGTGTA TATATTGTGN TTTTTGTTTT 679 TGTATAAAGC GAG--AAAAA CATATATCTT CTTGCTATAC ACTTATAATT ATGCAATATA 68754 |||||||||| ||| ||||| ||||||| || ||||| |||| |||||||||| |||||||||| TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC ACTTATAATT ATGCAATATA 739 CATACATTTT A 68765 |||||||||| | CATACATTTT A 750 hqPGS_C08HBa0060C12.1+_SGN-E379112+ (68295 68765) ******************************************************************************** EST sequence 389 -strand 612 n (File: SGN-E394609-) 1 ATTATTACAC CCCTAATGAA ATGATTAAGG AACTTATTAA AGCAAAACAA CTAAATTCTT 61 ATTTTGCAAT CTTTTCTTGT CATTCACAAG CGATAATTCT AAATCTTTTT CCTTCTCTCC 121 ATTTTATACA AGCTCTTGGG AAAATTGTAT ATAATAGCAA ACTAGTAATC TAACTAAATG 181 GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA GTTTGTCAGG 241 CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT CGCTCGCCTA TCTCGCTATA 301 TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA GCGAGAGAAA ATTGTATATA 361 CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT 421 ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA ATTGTGAATT ATATAATTGC 481 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 541 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 601 ACATACATTT TA Predicted gene structure (within gDNA segment 64264 to 69365): Exon 1 66234 66271 ( 38 n); cDNA 103 137 ( 35 n); score: 0.658 Intron 1 66272 68294 (2023 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 68295 68765 ( 471 n); cDNA 138 612 ( 475 n); score: 0.897 MATCH C08HBa0060C12.1+ SGN-E394609- 0.897 509 0.832 C PGS_C08HBa0060C12.1+_SGN-E394609- (66234 66271,68295 68765) Alignment (genomic DNA sequence = upper lines): ATGTTCTTGA CTGCGCTTAA TGTGATAACA AGCATGTTAT GGGGTGGGAC AGTGAAGGGT 66293 || || || || | || | | | || ||| ||| | || ATCTT-TTTC CTTCTCTCCA TTTTAT-ACA AGC-TCTT.. .......... .......... 137 GAGGAAAGCT CTAGACTTGG AGCAGCATGT TGTAGCTGAT ATGACTGAGC TGTTAGGTAC 66353 .......... .......... .......... .......... .......... .......... 137 TCCAAATATT TCCGATTTTT ATCCGGGCTT GGCCAGGTTC AATTTGAAGG GTGTAACAAA 66413 .......... .......... .......... .......... .......... .......... 137 GAAGATGAAT GTATTGGAAA AGAGATATGA TAAGATATTT GAGAGCATGA TTGATCAAAG 66473 .......... .......... .......... .......... .......... .......... 137 ACAGAAAATG GATTGAATTG CTGATCAGAT GGGAACTGGT GTTGGCCAAG AAAGCAAGGA 66533 .......... .......... .......... .......... .......... .......... 137 ATTTTTGCAA GTTTTGCTGA AGTTAAAAGA TGAATCAGAT GCCAAAATGC CTCTGACCAT 66593 .......... .......... .......... .......... .......... .......... 137 GATTGAAATC AAAGCCTTAC TTATGGTATG TTTTATTCGT AAAGTTTTGT CGTGAGCTGA 66653 .......... .......... .......... .......... .......... .......... 137 GCTGTTGTTT CATTCTTCTT CTATGAAAAT TCACATTCAT TTGATATGGT GCTGGTTTCA 66713 .......... .......... .......... .......... .......... .......... 137 AAGTTTGCAT TTTACTTCAA ATAGTCTAAT TCCTTACCTA TTACAGAAAA AAAATTTGGT 66773 .......... .......... .......... .......... .......... .......... 137 TTGTAGTGAT GTTATTCATA ATAAGAGGAT CAATGCAAAT AAAAGTGAAA TATAGGATAG 66833 .......... .......... .......... .......... .......... .......... 137 TAAATGTACT GAAGAATTAT TACATCAGAT GAGTAAAATA TATTAGATGA ATCAGGTTTA 66893 .......... .......... .......... .......... .......... .......... 137 TATTAATTCA TGTTCTGAAC TGTTAATTGC TACCTTTTTA TTGGATTGCA TTAAGGAAGA 66953 .......... .......... .......... .......... .......... .......... 137 CATAACTGTG AATTAAGGCA GTGAACCATG AACTGAAATC CAATATACAG TATTTGTTAA 67013 .......... .......... .......... .......... .......... .......... 137 TAACTTCACA AATATTGTGG ACAGGATATG GTGGTTGGTG GAACTGACAC AACCTCCAAC 67073 .......... .......... .......... .......... .......... .......... 137 GCGGTTTAGT TTGCCATGGC TAAAATTATG AACAAACCAT ACGTCCTGAG GAAGTTACAA 67133 .......... .......... .......... .......... .......... .......... 137 CAAGAACTAG AGGTAGTTGT GGGAAAAGAT AATATTGTGA AAGAGTCTCA TATTCAGCAA 67193 .......... .......... .......... .......... .......... .......... 137 TTACCATATA GATCTTTATG CAGTTGTGAA AGAAGCCTTG CGTTTACATC CAACTCTTCC 67253 .......... .......... .......... .......... .......... .......... 137 ACTCTTGGTG CCACATTGTC CTAGTGAGAC ATGTACTGTA GGAGGATACA CTGTTCCTAA 67313 .......... .......... .......... .......... .......... .......... 137 TGGATCTCGT GTTTTCGTAA ATGTATGGGC TATACAGAGA GATCCTTCTA TCTGGAAAAA 67373 .......... .......... .......... .......... .......... .......... 137 TCCAAGAGAG TTCTGTCCAG AGAGATTTTT CGACAATAAA TGGGATGATA ATGGAAATGA 67433 .......... .......... .......... .......... .......... .......... 137 TGTCAACTAC TTCCCATTTG GCTCTGGCAG GAGAATCTGC GCGGGGATAG TCATGGCAGA 67493 .......... .......... .......... .......... .......... .......... 137 GAGGATTTTC ATGTATTCAC TGGCTTCACT CATTCATTCT TTCGACTGGA AATTGCCCGA 67553 .......... .......... .......... .......... .......... .......... 137 AGGAGAGACA TTAGACCTTA CAGAGAAGTT TGGGATTGTT CTGAAGAAAA AAGTACCTCT 67613 .......... .......... .......... .......... .......... .......... 137 GGTGGCTATA CCTACTCCCA AGATTTTTCA ATCCGAACAC TGTATGAGTA AGATAAATAT 67673 .......... .......... .......... .......... .......... .......... 137 GTGTCTGTAA AGAATCGTGT TCTGTATGAT GATTCTGTCT TTGAATGGTG AATTGTGGAA 67733 .......... .......... .......... .......... .......... .......... 137 ATTGGATCCA GTTAGTACAC ATTAAGAATA TAAAACATGT AATTCAAGAG TACCTGAATT 67793 .......... .......... .......... .......... .......... .......... 137 AGCACATCAG AATGAATTTT CTGTTTGTAA GATAAAAGAT ATTTCCAGTT TTATGTTCAA 67853 .......... .......... .......... .......... .......... .......... 137 GTCATAGTCA GTTATTTACT ATTATTTTGT GATTGATGAG CAACACTTCA AGGTTAACCA 67913 .......... .......... .......... .......... .......... .......... 137 ACAAAAGTCA CATTTCTTCA ATGATCCATC CACCATCAAA ATGTTCATTG ACAACTTGTT 67973 .......... .......... .......... .......... .......... .......... 137 TACCTCACAA ATAAATAAAT TATCCCAAAA AAGAAAGATG GTTTAAAACA AAATTTAATA 68033 .......... .......... .......... .......... .......... .......... 137 AAATAATTAA AATGAAATGT TTTTTTTTAA AAAAAGAAAT TACTTTAAAA CAAAAAAATA 68093 .......... .......... .......... .......... .......... .......... 137 TTTCAAAATA ATTTAGTGAA AAGGTCCTTT AATTTTTTGG GTGACTTTCT AAATAATATA 68153 .......... .......... .......... .......... .......... .......... 137 TTAAAAATAG TTGAGTGACT TTGAGATATA AAAGAAAGTT AAATGACTTT GTATGAAATT 68213 .......... .......... .......... .......... .......... .......... 137 AGTATTAGCT GAATGAAGAT ATAAAATAAG CAACTCTTAG CAGTCAAAGA AGGAATGCCT 68273 .......... .......... .......... .......... .......... .......... 137 TTTTTTTTGC TGAAAATTGA AGGGAAAATT GTATATAATA GCAAACTAAT AATCTAAATT 68333 ||||||||| |||||||||| |||||||| | |||||| | | .......... .......... .GGGAAAATT GTATATAATA GCAAACTAGT AATCTA-ACT 175 AAATAGAATA GCTAGGGTTT GATTTAATTG TGCTCCATAG CAAACATTGG CAAAAATTTG 68393 |||| || || ||||| |||| |||||||||| |||||||||| ||||| || | | ||| |||| AAATGGAGTA GCTAGAGTTT GATTTAATTG TGCTCCATAG CAAACGTTAG CTAAAGTTTG 235 CCAGGCGTCT CTCTCCCAGA AGTCTCGCTC GCCACTCT-C --TCATTCTC GCCTCTCTCG 68450 ||||||||| | |||||| | | |||||||| |||||||| | || ||| |||| ||||| TCAGGCGTCT CCCTCCCAAA AATCTCGCTC GCCACTCTCC ATTCTCGCTC GCCTATCTCG 295 CTTTATACAC AGAAGTGTAT AATTTCTGTT TCTGTTTTGT ATAAAGCGAG AGAAAATTGT 68510 || ||||||| |||||||||| || ||||||| ||| |||||| |||||||||| |||||||||| CTATATACAC AGAAGTGTAT AAATTCTGTT TCTATTTTGT ATAAAGCGAG AGAAAATTGT 355 ATATACACAT GCAAAAATGT ATATCTTTGT GTTATACGCT TAATTATATA ATTTACAAAC 68570 |||||||||| | |||||| | ||||||| || ||||||| || |||||||| | | |||||||| ATATACACAT GTAAAAATAT ATATCTTCGT GTTATACACT TAATTATACA AATTACAAAC 415 ATTTTACTTC AAATATTGCA GAGAAAAATG CCAAAGAATT ATACAATTGT GAATTATATA 68630 |||||||||| |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ATTTTACTTC AAATATTGCA GAGAAAAAGG CCAACGAATT ATACAATTGT GAATTATATA 475 ATTGCAGTGA AATACAGTTT TTTCTAGCTT TATACAACAG AAGTGTATAT CTTGTGTTTC 68690 |||||||||| |||||| ||| | |||| ||| |||||||||| |||||||||| |||||||| ATTGCAGTGA AATACAATTT TCTCTAACTT TATACAACAG AAGTGTATAT ATTGTGTTTT 535 TGTTTTTGTA TAAAGCGAG- -AAAAACATA TATCTTCTTG CTATACACTT ATAATTATGC 68748 |||||||||| ||||||||| ||||||||| ||| |||||| | |||||||| |||||||||| TGTTTTTGTA TAAAGCGAGA CAAAAACATA TATATTCTTG CCATACACTT ATAATTATGC 595 AATATACATA CATTTTA 68765 |||||||||| ||||||| AATATACATA CATTTTA 612 hqPGS_C08HBa0060C12.1+_SGN-E394609- (68295 68765) ******************************************************************************** EST sequence 220 +strand 651 n (File: SGN-E394141+) 1 TTTTTTTTTT TTTTTTTTTT CTATCAATGT GATACTGGGG GAATATATAT ATATCTTTTT 61 AATGTTAATT AATCGAAATT GAGAAGCTGA AATTTCACCT ATAACATCAA GTATACACGT 121 TACCTATGCC CTGGTTGTTT ATAGCTGAAT TTCAAGCCCC TTTTCTTATT CTATTATTAC 181 ACCCCTAATG AAATGATTAA GGAACTTATT AAAGCAAAAC AACTAAATTC TTATTTTGCA 241 ATCTTTTCTT GTCATTCACA AGCGATAATT CTAAATCTTT TTCCTTCTCT CCATTTTATA 301 CAAGCTCTTG GGAAAATTGT ATATAATAGC AAACTAGTAA TCTAACTAAA TGGAGTAGCT 361 AGAGTTTGAT TTAATTGTGC TCCATAGCAA ACGTTAGCTA AAGTTTGTCA GGCGTCTCCC 421 TCCCAAAAAT CTCGCTCGCC ACTCTCCATT CTCGCTCGCC TATCTCGCTA TATACACAGA 481 AGTGTATAAA TTCTGTTTCT ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGTA 541 AAAATATATA TCTTCGTGTT ATACACTTAA TTATACAAAT TACAAACATT TTACTTCAAA 601 TATTGCAAAG AAAAAGGCCA ACGAATTATA CAATTGTGAA TTATATAATT G Predicted gene structure (within gDNA segment 63154 to 69244): Exon 1 64021 64058 ( 38 n); cDNA 275 309 ( 35 n); score: 0.684 Intron 1 64059 68294 (4236 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 68295 68634 ( 340 n); cDNA 310 651 ( 342 n); score: 0.890 PPA cDNA 20 1 MATCH C08HBa0060C12.1+ SGN-E394141+ 0.890 378 0.581 C PGS_C08HBa0060C12.1+_SGN-E394141+ (64021 64058,68295 68634) Alignment (genomic DNA sequence = upper lines): ATGTTTTTGA CTGCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 64080 || ||||| || | || | | | | |||| ||| | || ATCTTTTT-C CTTCTCTCCA TTTTA-TACA AGC-TCTT.. .......... .......... 309 GAGGAAAGAG CTACTCTTGG GGCAGAGGTT AGGGATGTTG TGACTAAGAT GAATGAGCTG 64140 .......... .......... .......... .......... .......... .......... 309 TTAGTTACTC CAAATCTTTC CGATTTTTAC CCGGGGTTGG CCTGGTTTGA TTTGCAGGGT 64200 .......... .......... .......... .......... .......... .......... 309 GTTAAAAAGA AGATGAAAGT GTTGGCAAAG AGATATGATA ACATATTTGA GAGCATGATT 64260 .......... .......... .......... .......... .......... .......... 309 GATCAAAGAC AAAAAATGAA TAGAAATGGG GTTGGCCAAG AAAGCAAGGA CTTTTTGCAA 64320 .......... .......... .......... .......... .......... .......... 309 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT CCCAAAATGC CTCTGACCAT GACTGAACTC 64380 .......... .......... .......... .......... .......... .......... 309 AAAGCCTTAC TTACGGTATG TTTTATTAAT TGTGCATTCA AATTTGCTGC TTACACTATA 64440 .......... .......... .......... .......... .......... .......... 309 TTTTCATAAA TAAAAAATCG TTGTGCATGA TAATAACTTC ACTAATACTA TGGACAGGAT 64500 .......... .......... .......... .......... .......... .......... 309 ATGGTTGTTG GTGGAACTGA AACTAGTGCC AACACAGTTG AGTTTGCCAT GACTGAAATT 64560 .......... .......... .......... .......... .......... .......... 309 ATGAACAAAC CAGACGTCTT GAGGAAATTA CAACAAGAAG TGGATACAGT TGTGGGAAAA 64620 .......... .......... .......... .......... .......... .......... 309 GATAACATAG TGGAAGAGTC TCATATACAA CACTTGCCGT ATTTGTATGC AGTTATGAAA 64680 .......... .......... .......... .......... .......... .......... 309 GAAGTCTTGC GTCTATATCC AGCTGTCCCA CTCTTGGTGC CTCATTGTCC TAGTGAGACA 64740 .......... .......... .......... .......... .......... .......... 309 GTCACTGTTG GAGGATATGC TGTTCCTAAA GGATCTAGTG TTTTCGTAAA CGTATGGGCT 64800 .......... .......... .......... .......... .......... .......... 309 ATACATCGAG ATCCTTCTAT TTGGGAAAAT CCAACTGAGT TCCATCCGGA AAGATTTATG 64860 .......... .......... .......... .......... .......... .......... 309 GAGAATAAAT GGGACTTCAG TGGAAATGAT TTGACCTACT TCCCGTTTGG TTCTGGCAGA 64920 .......... .......... .......... .......... .......... .......... 309 AGAATCTGTG TGGGGTTAGC CATGGCAGAG AGGATGTTCA TGTATTCACT GGCTTCACTT 64980 .......... .......... .......... .......... .......... .......... 309 ATTCATTCTT TTGACTGGAA ATTGCCTGAA GGAGAGACAT TAGACTTTAC AGAGAAGTTT 65040 .......... .......... .......... .......... .......... .......... 309 GTGCTCGTTC TGAAGAAGAA AATGCCTCTG GTGGCTATAC CTACTCCAAG ATTATCCAAT 65100 .......... .......... .......... .......... .......... .......... 309 CCAACACTCT ATGAGTAAGA TAGAAATATG TCTGTAAAGA GTCGCTTCTG CATGGTGATT 65160 .......... .......... .......... .......... .......... .......... 309 TTATCTTTTG TGTGATGAAC TATGGAAATG TGATCAATGA AAGATGTTGC TCTATCCTGG 65220 .......... .......... .......... .......... .......... .......... 309 CAATGGTCTT ATGAGCAACT CAATGTTCCA TGTGAAATGC CTAGTTTCCA TGACTTCTTA 65280 .......... .......... .......... .......... .......... .......... 309 AATATTGTAT TCTGAATCGA ATTTGAAATA ATAGTACATG TATGACTTTA TTGTAGAGAT 65340 .......... .......... .......... .......... .......... .......... 309 TATGCTTCTA TCTTTTGTTT GATGAACTAT ATATGGAGAT ATAATACTTA AATTTACAAG 65400 .......... .......... .......... .......... .......... .......... 309 GGCAATTATT ATTACTAAGC AAAACCTGGA GCAAGATGTG TGAAATTATT TCTAAAAGCT 65460 .......... .......... .......... .......... .......... .......... 309 ATGACATCCT GAAAAGGATT TTAAAGAGCA TATTTGTGCT CAATATATAC CTAATTTAAT 65520 .......... .......... .......... .......... .......... .......... 309 ACTATTTTCT TATTTGTCTT GTGAACAGGA CAGACAAGGT ATCAAAAAGT GAAGATTCAT 65580 .......... .......... .......... .......... .......... .......... 309 TTGTGTTAAA CAACAAGGGG CCATTGACTT CATCACTAAA TATAAATGTT GAAGTGGAAA 65640 .......... .......... .......... .......... .......... .......... 309 ATGGCTTCCC ACCACACTGT TTCTGCCATT TCTCTCATTT TTCTCTTAGG CTGATATAAT 65700 .......... .......... .......... .......... .......... .......... 309 GTCACTAAAA TTCTTCAAAC CTTTGTGTGA TTCTTTCCCA TGGCCCTGGC AAGAACAAAA 65760 .......... .......... .......... .......... .......... .......... 309 TATTGAGAAA AGTGGTGTAT TTTTCTCCTA TGTTCTTGGC AGTTTAGCTT TAATATGGTT 65820 .......... .......... .......... .......... .......... .......... 309 TCTTTGTTTT TACATCAACA AGTCAAAAAA GGGACAACCG CCATTATGGG CCTAAAGCTT 65880 .......... .......... .......... .......... .......... .......... 309 TGCCTTTGCT AGGTAATCTC CACTCTCTTG ATCCCCAACT TCACACCTAT TTTGCATCTC 65940 .......... .......... .......... .......... .......... .......... 309 TTTCCCAAAC TTATGGGCCC ATTTGTAGAC TCTGGCTTGG TTACTTCACC TGCCTTAGCT 66000 .......... .......... .......... .......... .......... .......... 309 TGCGAGGTGC TTAAGAATCA AGATACCATT TTTGCTAACA GAGATGTACC TGCTGCTTGT 66060 .......... .......... .......... .......... .......... .......... 309 AAAGAATCTT CATATGGTGG AAAGGACATA GTTTGGAATC CTTACGGACC GAAATGGCGT 66120 .......... .......... .......... .......... .......... .......... 309 ATGTTTATTG GTTCAACTTT AGATTCTGTT TATGCACTAA GGAAAAGGGA GCTTAGCAAT 66180 .......... .......... .......... .......... .......... .......... 309 CGATCAATTA CTTTTATAAT CAGGCGGGAT CGCCTGTGAA TATTGGTGAA CAGATGTTCT 66240 .......... .......... .......... .......... .......... .......... 309 TGACTGCGCT TAATGTGATA ACAAGCATGT TATGGGGTGG GACAGTGAAG GGTGAGGAAA 66300 .......... .......... .......... .......... .......... .......... 309 GCTCTAGACT TGGAGCAGCA TGTTGTAGCT GATATGACTG AGCTGTTAGG TACTCCAAAT 66360 .......... .......... .......... .......... .......... .......... 309 ATTTCCGATT TTTATCCGGG CTTGGCCAGG TTCAATTTGA AGGGTGTAAC AAAGAAGATG 66420 .......... .......... .......... .......... .......... .......... 309 AATGTATTGG AAAAGAGATA TGATAAGATA TTTGAGAGCA TGATTGATCA AAGACAGAAA 66480 .......... .......... .......... .......... .......... .......... 309 ATGGATTGAA TTGCTGATCA GATGGGAACT GGTGTTGGCC AAGAAAGCAA GGAATTTTTG 66540 .......... .......... .......... .......... .......... .......... 309 CAAGTTTTGC TGAAGTTAAA AGATGAATCA GATGCCAAAA TGCCTCTGAC CATGATTGAA 66600 .......... .......... .......... .......... .......... .......... 309 ATCAAAGCCT TACTTATGGT ATGTTTTATT CGTAAAGTTT TGTCGTGAGC TGAGCTGTTG 66660 .......... .......... .......... .......... .......... .......... 309 TTTCATTCTT CTTCTATGAA AATTCACATT CATTTGATAT GGTGCTGGTT TCAAAGTTTG 66720 .......... .......... .......... .......... .......... .......... 309 CATTTTACTT CAAATAGTCT AATTCCTTAC CTATTACAGA AAAAAAATTT GGTTTGTAGT 66780 .......... .......... .......... .......... .......... .......... 309 GATGTTATTC ATAATAAGAG GATCAATGCA AATAAAAGTG AAATATAGGA TAGTAAATGT 66840 .......... .......... .......... .......... .......... .......... 309 ACTGAAGAAT TATTACATCA GATGAGTAAA ATATATTAGA TGAATCAGGT TTATATTAAT 66900 .......... .......... .......... .......... .......... .......... 309 TCATGTTCTG AACTGTTAAT TGCTACCTTT TTATTGGATT GCATTAAGGA AGACATAACT 66960 .......... .......... .......... .......... .......... .......... 309 GTGAATTAAG GCAGTGAACC ATGAACTGAA ATCCAATATA CAGTATTTGT TAATAACTTC 67020 .......... .......... .......... .......... .......... .......... 309 ACAAATATTG TGGACAGGAT ATGGTGGTTG GTGGAACTGA CACAACCTCC AACGCGGTTT 67080 .......... .......... .......... .......... .......... .......... 309 AGTTTGCCAT GGCTAAAATT ATGAACAAAC CATACGTCCT GAGGAAGTTA CAACAAGAAC 67140 .......... .......... .......... .......... .......... .......... 309 TAGAGGTAGT TGTGGGAAAA GATAATATTG TGAAAGAGTC TCATATTCAG CAATTACCAT 67200 .......... .......... .......... .......... .......... .......... 309 ATAGATCTTT ATGCAGTTGT GAAAGAAGCC TTGCGTTTAC ATCCAACTCT TCCACTCTTG 67260 .......... .......... .......... .......... .......... .......... 309 GTGCCACATT GTCCTAGTGA GACATGTACT GTAGGAGGAT ACACTGTTCC TAATGGATCT 67320 .......... .......... .......... .......... .......... .......... 309 CGTGTTTTCG TAAATGTATG GGCTATACAG AGAGATCCTT CTATCTGGAA AAATCCAAGA 67380 .......... .......... .......... .......... .......... .......... 309 GAGTTCTGTC CAGAGAGATT TTTCGACAAT AAATGGGATG ATAATGGAAA TGATGTCAAC 67440 .......... .......... .......... .......... .......... .......... 309 TACTTCCCAT TTGGCTCTGG CAGGAGAATC TGCGCGGGGA TAGTCATGGC AGAGAGGATT 67500 .......... .......... .......... .......... .......... .......... 309 TTCATGTATT CACTGGCTTC ACTCATTCAT TCTTTCGACT GGAAATTGCC CGAAGGAGAG 67560 .......... .......... .......... .......... .......... .......... 309 ACATTAGACC TTACAGAGAA GTTTGGGATT GTTCTGAAGA AAAAAGTACC TCTGGTGGCT 67620 .......... .......... .......... .......... .......... .......... 309 ATACCTACTC CCAAGATTTT TCAATCCGAA CACTGTATGA GTAAGATAAA TATGTGTCTG 67680 .......... .......... .......... .......... .......... .......... 309 TAAAGAATCG TGTTCTGTAT GATGATTCTG TCTTTGAATG GTGAATTGTG GAAATTGGAT 67740 .......... .......... .......... .......... .......... .......... 309 CCAGTTAGTA CACATTAAGA ATATAAAACA TGTAATTCAA GAGTACCTGA ATTAGCACAT 67800 .......... .......... .......... .......... .......... .......... 309 CAGAATGAAT TTTCTGTTTG TAAGATAAAA GATATTTCCA GTTTTATGTT CAAGTCATAG 67860 .......... .......... .......... .......... .......... .......... 309 TCAGTTATTT ACTATTATTT TGTGATTGAT GAGCAACACT TCAAGGTTAA CCAACAAAAG 67920 .......... .......... .......... .......... .......... .......... 309 TCACATTTCT TCAATGATCC ATCCACCATC AAAATGTTCA TTGACAACTT GTTTACCTCA 67980 .......... .......... .......... .......... .......... .......... 309 CAAATAAATA AATTATCCCA AAAAAGAAAG ATGGTTTAAA ACAAAATTTA ATAAAATAAT 68040 .......... .......... .......... .......... .......... .......... 309 TAAAATGAAA TGTTTTTTTT TAAAAAAAGA AATTACTTTA AAACAAAAAA ATATTTCAAA 68100 .......... .......... .......... .......... .......... .......... 309 ATAATTTAGT GAAAAGGTCC TTTAATTTTT TGGGTGACTT TCTAAATAAT ATATTAAAAA 68160 .......... .......... .......... .......... .......... .......... 309 TAGTTGAGTG ACTTTGAGAT ATAAAAGAAA GTTAAATGAC TTTGTATGAA ATTAGTATTA 68220 .......... .......... .......... .......... .......... .......... 309 GCTGAATGAA GATATAAAAT AAGCAACTCT TAGCAGTCAA AGAAGGAATG CCTTTTTTTT 68280 .......... .......... .......... .......... .......... .......... 309 TGCTGAAAAT TGAAGGGAAA ATTGTATATA ATAGCAAACT AATAATCTAA ATTAAATAGA 68340 |||||| |||||||||| |||||||||| | |||||| | | ||||| || .......... ....GGGAAA ATTGTATATA ATAGCAAACT AGTAATCT-A ACTAAATGGA 354 ATAGCTAGGG TTTGATTTAA TTGTGCTCCA TAGCAAACAT TGGCAAAAAT TTGCCAGGCG 68400 ||||||| | |||||||||| |||||||||| |||||||| | | || ||| | ||| |||||| GTAGCTAGAG TTTGATTTAA TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG 414 TCTCTCTCCC AGAAGTCTCG CTCGCCACTC T-C-TCAT-T CTCGCCTCTC TCGCTTTATA 68457 |||| ||||| | || ||||| |||||||||| | | | | ||||||| || ||||| |||| TCTCCCTCCC AAAAATCTCG CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA 474 CACAGAAGTG TATAATTTCT GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA 68517 |||||||||| ||||| |||| |||||| ||| |||||||||| |||||||||| |||||||||| CACAGAAGTG TATAAATTCT GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA 534 CATGCAAAAA TGTATATCTT TGTGTTATAC GCTTAATTAT ATAATTTACA AACATTTTAC 68577 |||| ||||| | |||||||| ||||||||| ||||||||| | || ||||| |||||||||| CATGTAAAAA TATATATCTT CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC 594 TTCAAATATT GCAGAGAAAA ATGCCAAAGA ATTATACAAT TGTGAATTAT ATAATTG 68634 |||||||||| ||| |||||| | ||||| || |||||||||| |||||||||| ||||||| TTCAAATATT GCAAAGAAAA AGGCCAACGA ATTATACAAT TGTGAATTAT ATAATTG 651 hqPGS_C08HBa0060C12.1+_SGN-E394141+ (68295 68634) ******************************************************************************** EST sequence 120 +strand 605 n (File: SGN-E392605+) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGTG GGAATATATA TATATATCTA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATT Predicted gene structure (within gDNA segment 63144 to 69791): Exon 1 64021 64058 ( 38 n); cDNA 276 310 ( 35 n); score: 0.684 Intron 1 64059 68294 (4236 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 68295 68587 ( 293 n); cDNA 311 605 ( 295 n); score: 0.882 PPA cDNA 19 1 MATCH C08HBa0060C12.1+ SGN-E392605+ 0.882 331 0.547 C PGS_C08HBa0060C12.1+_SGN-E392605+ (64021 64058,68295 68587) Alignment (genomic DNA sequence = upper lines): ATGTTTTTGA CTGCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 64080 || ||||| || | || | | | | |||| ||| | || ATCTTTTT-C CTTCTCTCCA TTTTA-TACA AGC-TCTT.. .......... .......... 310 GAGGAAAGAG CTACTCTTGG GGCAGAGGTT AGGGATGTTG TGACTAAGAT GAATGAGCTG 64140 .......... .......... .......... .......... .......... .......... 310 TTAGTTACTC CAAATCTTTC CGATTTTTAC CCGGGGTTGG CCTGGTTTGA TTTGCAGGGT 64200 .......... .......... .......... .......... .......... .......... 310 GTTAAAAAGA AGATGAAAGT GTTGGCAAAG AGATATGATA ACATATTTGA GAGCATGATT 64260 .......... .......... .......... .......... .......... .......... 310 GATCAAAGAC AAAAAATGAA TAGAAATGGG GTTGGCCAAG AAAGCAAGGA CTTTTTGCAA 64320 .......... .......... .......... .......... .......... .......... 310 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT CCCAAAATGC CTCTGACCAT GACTGAACTC 64380 .......... .......... .......... .......... .......... .......... 310 AAAGCCTTAC TTACGGTATG TTTTATTAAT TGTGCATTCA AATTTGCTGC TTACACTATA 64440 .......... .......... .......... .......... .......... .......... 310 TTTTCATAAA TAAAAAATCG TTGTGCATGA TAATAACTTC ACTAATACTA TGGACAGGAT 64500 .......... .......... .......... .......... .......... .......... 310 ATGGTTGTTG GTGGAACTGA AACTAGTGCC AACACAGTTG AGTTTGCCAT GACTGAAATT 64560 .......... .......... .......... .......... .......... .......... 310 ATGAACAAAC CAGACGTCTT GAGGAAATTA CAACAAGAAG TGGATACAGT TGTGGGAAAA 64620 .......... .......... .......... .......... .......... .......... 310 GATAACATAG TGGAAGAGTC TCATATACAA CACTTGCCGT ATTTGTATGC AGTTATGAAA 64680 .......... .......... .......... .......... .......... .......... 310 GAAGTCTTGC GTCTATATCC AGCTGTCCCA CTCTTGGTGC CTCATTGTCC TAGTGAGACA 64740 .......... .......... .......... .......... .......... .......... 310 GTCACTGTTG GAGGATATGC TGTTCCTAAA GGATCTAGTG TTTTCGTAAA CGTATGGGCT 64800 .......... .......... .......... .......... .......... .......... 310 ATACATCGAG ATCCTTCTAT TTGGGAAAAT CCAACTGAGT TCCATCCGGA AAGATTTATG 64860 .......... .......... .......... .......... .......... .......... 310 GAGAATAAAT GGGACTTCAG TGGAAATGAT TTGACCTACT TCCCGTTTGG TTCTGGCAGA 64920 .......... .......... .......... .......... .......... .......... 310 AGAATCTGTG TGGGGTTAGC CATGGCAGAG AGGATGTTCA TGTATTCACT GGCTTCACTT 64980 .......... .......... .......... .......... .......... .......... 310 ATTCATTCTT TTGACTGGAA ATTGCCTGAA GGAGAGACAT TAGACTTTAC AGAGAAGTTT 65040 .......... .......... .......... .......... .......... .......... 310 GTGCTCGTTC TGAAGAAGAA AATGCCTCTG GTGGCTATAC CTACTCCAAG ATTATCCAAT 65100 .......... .......... .......... .......... .......... .......... 310 CCAACACTCT ATGAGTAAGA TAGAAATATG TCTGTAAAGA GTCGCTTCTG CATGGTGATT 65160 .......... .......... .......... .......... .......... .......... 310 TTATCTTTTG TGTGATGAAC TATGGAAATG TGATCAATGA AAGATGTTGC TCTATCCTGG 65220 .......... .......... .......... .......... .......... .......... 310 CAATGGTCTT ATGAGCAACT CAATGTTCCA TGTGAAATGC CTAGTTTCCA TGACTTCTTA 65280 .......... .......... .......... .......... .......... .......... 310 AATATTGTAT TCTGAATCGA ATTTGAAATA ATAGTACATG TATGACTTTA TTGTAGAGAT 65340 .......... .......... .......... .......... .......... .......... 310 TATGCTTCTA TCTTTTGTTT GATGAACTAT ATATGGAGAT ATAATACTTA AATTTACAAG 65400 .......... .......... .......... .......... .......... .......... 310 GGCAATTATT ATTACTAAGC AAAACCTGGA GCAAGATGTG TGAAATTATT TCTAAAAGCT 65460 .......... .......... .......... .......... .......... .......... 310 ATGACATCCT GAAAAGGATT TTAAAGAGCA TATTTGTGCT CAATATATAC CTAATTTAAT 65520 .......... .......... .......... .......... .......... .......... 310 ACTATTTTCT TATTTGTCTT GTGAACAGGA CAGACAAGGT ATCAAAAAGT GAAGATTCAT 65580 .......... .......... .......... .......... .......... .......... 310 TTGTGTTAAA CAACAAGGGG CCATTGACTT CATCACTAAA TATAAATGTT GAAGTGGAAA 65640 .......... .......... .......... .......... .......... .......... 310 ATGGCTTCCC ACCACACTGT TTCTGCCATT TCTCTCATTT TTCTCTTAGG CTGATATAAT 65700 .......... .......... .......... .......... .......... .......... 310 GTCACTAAAA TTCTTCAAAC CTTTGTGTGA TTCTTTCCCA TGGCCCTGGC AAGAACAAAA 65760 .......... .......... .......... .......... .......... .......... 310 TATTGAGAAA AGTGGTGTAT TTTTCTCCTA TGTTCTTGGC AGTTTAGCTT TAATATGGTT 65820 .......... .......... .......... .......... .......... .......... 310 TCTTTGTTTT TACATCAACA AGTCAAAAAA GGGACAACCG CCATTATGGG CCTAAAGCTT 65880 .......... .......... .......... .......... .......... .......... 310 TGCCTTTGCT AGGTAATCTC CACTCTCTTG ATCCCCAACT TCACACCTAT TTTGCATCTC 65940 .......... .......... .......... .......... .......... .......... 310 TTTCCCAAAC TTATGGGCCC ATTTGTAGAC TCTGGCTTGG TTACTTCACC TGCCTTAGCT 66000 .......... .......... .......... .......... .......... .......... 310 TGCGAGGTGC TTAAGAATCA AGATACCATT TTTGCTAACA GAGATGTACC TGCTGCTTGT 66060 .......... .......... .......... .......... .......... .......... 310 AAAGAATCTT CATATGGTGG AAAGGACATA GTTTGGAATC CTTACGGACC GAAATGGCGT 66120 .......... .......... .......... .......... .......... .......... 310 ATGTTTATTG GTTCAACTTT AGATTCTGTT TATGCACTAA GGAAAAGGGA GCTTAGCAAT 66180 .......... .......... .......... .......... .......... .......... 310 CGATCAATTA CTTTTATAAT CAGGCGGGAT CGCCTGTGAA TATTGGTGAA CAGATGTTCT 66240 .......... .......... .......... .......... .......... .......... 310 TGACTGCGCT TAATGTGATA ACAAGCATGT TATGGGGTGG GACAGTGAAG GGTGAGGAAA 66300 .......... .......... .......... .......... .......... .......... 310 GCTCTAGACT TGGAGCAGCA TGTTGTAGCT GATATGACTG AGCTGTTAGG TACTCCAAAT 66360 .......... .......... .......... .......... .......... .......... 310 ATTTCCGATT TTTATCCGGG CTTGGCCAGG TTCAATTTGA AGGGTGTAAC AAAGAAGATG 66420 .......... .......... .......... .......... .......... .......... 310 AATGTATTGG AAAAGAGATA TGATAAGATA TTTGAGAGCA TGATTGATCA AAGACAGAAA 66480 .......... .......... .......... .......... .......... .......... 310 ATGGATTGAA TTGCTGATCA GATGGGAACT GGTGTTGGCC AAGAAAGCAA GGAATTTTTG 66540 .......... .......... .......... .......... .......... .......... 310 CAAGTTTTGC TGAAGTTAAA AGATGAATCA GATGCCAAAA TGCCTCTGAC CATGATTGAA 66600 .......... .......... .......... .......... .......... .......... 310 ATCAAAGCCT TACTTATGGT ATGTTTTATT CGTAAAGTTT TGTCGTGAGC TGAGCTGTTG 66660 .......... .......... .......... .......... .......... .......... 310 TTTCATTCTT CTTCTATGAA AATTCACATT CATTTGATAT GGTGCTGGTT TCAAAGTTTG 66720 .......... .......... .......... .......... .......... .......... 310 CATTTTACTT CAAATAGTCT AATTCCTTAC CTATTACAGA AAAAAAATTT GGTTTGTAGT 66780 .......... .......... .......... .......... .......... .......... 310 GATGTTATTC ATAATAAGAG GATCAATGCA AATAAAAGTG AAATATAGGA TAGTAAATGT 66840 .......... .......... .......... .......... .......... .......... 310 ACTGAAGAAT TATTACATCA GATGAGTAAA ATATATTAGA TGAATCAGGT TTATATTAAT 66900 .......... .......... .......... .......... .......... .......... 310 TCATGTTCTG AACTGTTAAT TGCTACCTTT TTATTGGATT GCATTAAGGA AGACATAACT 66960 .......... .......... .......... .......... .......... .......... 310 GTGAATTAAG GCAGTGAACC ATGAACTGAA ATCCAATATA CAGTATTTGT TAATAACTTC 67020 .......... .......... .......... .......... .......... .......... 310 ACAAATATTG TGGACAGGAT ATGGTGGTTG GTGGAACTGA CACAACCTCC AACGCGGTTT 67080 .......... .......... .......... .......... .......... .......... 310 AGTTTGCCAT GGCTAAAATT ATGAACAAAC CATACGTCCT GAGGAAGTTA CAACAAGAAC 67140 .......... .......... .......... .......... .......... .......... 310 TAGAGGTAGT TGTGGGAAAA GATAATATTG TGAAAGAGTC TCATATTCAG CAATTACCAT 67200 .......... .......... .......... .......... .......... .......... 310 ATAGATCTTT ATGCAGTTGT GAAAGAAGCC TTGCGTTTAC ATCCAACTCT TCCACTCTTG 67260 .......... .......... .......... .......... .......... .......... 310 GTGCCACATT GTCCTAGTGA GACATGTACT GTAGGAGGAT ACACTGTTCC TAATGGATCT 67320 .......... .......... .......... .......... .......... .......... 310 CGTGTTTTCG TAAATGTATG GGCTATACAG AGAGATCCTT CTATCTGGAA AAATCCAAGA 67380 .......... .......... .......... .......... .......... .......... 310 GAGTTCTGTC CAGAGAGATT TTTCGACAAT AAATGGGATG ATAATGGAAA TGATGTCAAC 67440 .......... .......... .......... .......... .......... .......... 310 TACTTCCCAT TTGGCTCTGG CAGGAGAATC TGCGCGGGGA TAGTCATGGC AGAGAGGATT 67500 .......... .......... .......... .......... .......... .......... 310 TTCATGTATT CACTGGCTTC ACTCATTCAT TCTTTCGACT GGAAATTGCC CGAAGGAGAG 67560 .......... .......... .......... .......... .......... .......... 310 ACATTAGACC TTACAGAGAA GTTTGGGATT GTTCTGAAGA AAAAAGTACC TCTGGTGGCT 67620 .......... .......... .......... .......... .......... .......... 310 ATACCTACTC CCAAGATTTT TCAATCCGAA CACTGTATGA GTAAGATAAA TATGTGTCTG 67680 .......... .......... .......... .......... .......... .......... 310 TAAAGAATCG TGTTCTGTAT GATGATTCTG TCTTTGAATG GTGAATTGTG GAAATTGGAT 67740 .......... .......... .......... .......... .......... .......... 310 CCAGTTAGTA CACATTAAGA ATATAAAACA TGTAATTCAA GAGTACCTGA ATTAGCACAT 67800 .......... .......... .......... .......... .......... .......... 310 CAGAATGAAT TTTCTGTTTG TAAGATAAAA GATATTTCCA GTTTTATGTT CAAGTCATAG 67860 .......... .......... .......... .......... .......... .......... 310 TCAGTTATTT ACTATTATTT TGTGATTGAT GAGCAACACT TCAAGGTTAA CCAACAAAAG 67920 .......... .......... .......... .......... .......... .......... 310 TCACATTTCT TCAATGATCC ATCCACCATC AAAATGTTCA TTGACAACTT GTTTACCTCA 67980 .......... .......... .......... .......... .......... .......... 310 CAAATAAATA AATTATCCCA AAAAAGAAAG ATGGTTTAAA ACAAAATTTA ATAAAATAAT 68040 .......... .......... .......... .......... .......... .......... 310 TAAAATGAAA TGTTTTTTTT TAAAAAAAGA AATTACTTTA AAACAAAAAA ATATTTCAAA 68100 .......... .......... .......... .......... .......... .......... 310 ATAATTTAGT GAAAAGGTCC TTTAATTTTT TGGGTGACTT TCTAAATAAT ATATTAAAAA 68160 .......... .......... .......... .......... .......... .......... 310 TAGTTGAGTG ACTTTGAGAT ATAAAAGAAA GTTAAATGAC TTTGTATGAA ATTAGTATTA 68220 .......... .......... .......... .......... .......... .......... 310 GCTGAATGAA GATATAAAAT AAGCAACTCT TAGCAGTCAA AGAAGGAATG CCTTTTTTTT 68280 .......... .......... .......... .......... .......... .......... 310 TGCTGAAAAT TGAAGGGAAA ATTGTATATA ATAGCAAACT AATAATCTAA ATTAAATAGA 68340 |||||| |||||||||| |||||||||| | |||||| | | ||||| || .......... ....GGGAAA ATTGTATATA ATAGCAAACT AGTAATCT-A ACTAAATGGA 355 ATAGCTAGGG TTTGATTTAA TTGTGCTCCA TAGCAAACAT TGGCAAAAAT TTGCCAGGCG 68400 ||||||| | |||||||||| |||||||||| |||||||| | | || ||| | ||| |||||| GTAGCTAGAG TTTGATTTAA TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG 415 TCTCTCTCCC AGAAGTCTCG CTCGCCACTC T-C-TCAT-T CTCGCCTCTC TCGCTTTATA 68457 |||| ||||| | || ||||| |||||||||| | | | | ||||||| || ||||| |||| TCTCCCTCCC AAAAATCTCG CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA 475 CACAGAAGTG TATAATTTCT GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA 68517 |||||||||| ||||| |||| |||||| ||| |||||||||| |||||||||| |||||||||| CACAGAAGTG TATAAATTCT GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA 535 CATGCAAAAA TGTATATCTT TGTGTTATAC GCTTAATTAT ATAATTTACA AACATTTTAC 68577 |||| ||||| | |||||||| ||||||||| ||||||||| | || ||||| |||||||||| CATGTAAAAA TATATATCTT CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC 595 TTCAAATATT 68587 |||||||||| TTCAAATATT 605 hqPGS_C08HBa0060C12.1+_SGN-E392605+ (68295 68587) ******************************************************************************** EST sequence 315 -strand 570 n (File: SGN-E379618-) 1 GCAAAACAAC TAAATTCTTA TTTTGCAATC TTTTCTTGTC ATTCACAAGC GATAATTCTA 61 AATCTTTTTC CTTCTCTCCA TNTTATACAA GCTCTTGGGA AAATTGTATA TAATAGCAAA 121 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 181 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 241 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 301 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 361 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 421 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 481 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 541 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 64674 to 69364): Exon 1 68296 68764 ( 469 n); cDNA 98 570 ( 473 n); score: 0.897 MATCH C08HBa0060C12.1+ SGN-E379618- 0.897 469 0.823 C PGS_C08HBa0060C12.1+_SGN-E379618- (68296 68764) Alignment (genomic DNA sequence = upper lines): GGAAAATTGT ATATAATAGC AAACTAATAA TCTAAATTAA ATAGAATAGC TAGGGTTTGA 68355 |||||||||| |||||||||| |||||| ||| ||| || ||| || || |||| ||| |||||| GGAAAATTGT ATATAATAGC AAACTAGTAA TCT-AACTAA ATGGAGTAGC TAGAGTTTGA 156 TTTAATTGTG CTCCATAGCA AACATTGGCA AAAATTTGCC AGGCGTCTCT CTCCCAGAAG 68415 |||||||||| |||||||||| ||| || || ||| |||| | ||||||||| |||||| || TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC CTCCCAAAAA 216 TCTCGCTCGC CACTCT-C-- TCATTCTCGC CTCTCTCGCT TTATACACAG AAGTGTATAA 68472 |||||||||| |||||| | || ||||| || ||||||| ||||||||| |||||||||| TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG AAGTGTATAA 276 TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC AAAAATGTAT 68532 ||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||| ||| ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT AAAAATATAT 336 ATCTTTGTGT TATACGCTTA ATTATATAAT TTACAAACAT TTTACTTCAA ATATTGCAGA 68592 ||||| |||| ||||| |||| |||||| || |||||||||| |||||||||| |||||||||| ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA ATATTGCAGA 396 GAAAAATGCC AAAGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA TACAGTTTTT 68652 |||||| ||| || ||||||| |||||||||| |||||||||| |||||||||| |||| |||| GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA TACAATTTTC 456 TCTAGCTTTA TACAACAGAA GTGTATATCT TGTGTTTCTG TTTTTGTATA AAGCGAG--A 68710 |||| ||||| |||||||||| |||||||| | ||||||| || |||||||||| ||||||| | TCTAACTTTA TACAACAGAA GTGTATATAT TGTGTTTTTG TTTTTGTATA AAGCGAGACA 516 AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA TATACATACA TTTT 68764 |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| |||| AAAACATATA TATTCTTGCC ATACACTTAT AATTATGCAA TATACATACA TTTT 570 hqPGS_C08HBa0060C12.1+_SGN-E379618- (68296 68764) ******************************************************************************** EST sequence 374 -strand 530 n (File: SGN-E393065-) 1 TTCACAAGCG ATAATTCTAA ATCTTTTTCC TTCTCTCCAT TTTATACAAG CTATGGGACA 61 AATTGTATAT AATAGCAAAC TAGTAATCTA ACTAAATGGA GTAGATAGAG TTAGATCTTA 121 TTGTGCTTCA TGGCAAACGT TAGCTAAAGT TGGTCAGGCG TCTGCCTCCC AAAAATCTCG 181 CTGGCCATTT TCCATTATCG CTGGCATATC TCGTTATATA CACAGAAGTG TATAGATTAT 241 GTTTATATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTGAAAA TATATATCTT 301 CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATG GCAGTGAAAA 361 AGGCCAAGGA ATTATGCAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTGTCTAA 421 CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTA GTATAAAGCG AGACAAAAAC 481 ATATATATTC TTGCCATGCG CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 65684 to 69365): Exon 1 68299 68765 ( 467 n); cDNA 60 530 ( 471 n); score: 0.847 MATCH C08HBa0060C12.1+ SGN-E393065- 0.847 467 0.881 C PGS_C08HBa0060C12.1+_SGN-E393065- (68299 68765) Alignment (genomic DNA sequence = upper lines): AAATTGTATA TAATAGCAAA CTAATAATCT AAATTAAATA GAATAGCTAG GGTTTGATTT 68358 |||||||||| |||||||||| ||| |||||| || | |||| || ||| ||| ||| ||| | AAATTGTATA TAATAGCAAA CTAGTAATCT AACT-AAATG GAGTAGATAG AGTTAGATCT 118 AATTGTGCTC CATAGCAAAC ATTGGCAAAA ATTTGCCAGG CGTCTCTCTC CCAGAAGTCT 68418 |||||||| ||| |||||| || || ||| || | |||| ||||| ||| ||| || ||| TATTGTGCTT CATGGCAAAC GTTAGCTAAA GTTGGTCAGG CGTCTGCCTC CCAAAAATCT 178 CGCTCGCCAC TCT-C-TCAT -TCTCGCCTC TCTCGCTTTA TACACAGAAG TGTATAATTT 68475 |||| |||| | | | | || || || | ||||| | || |||||||||| |||||| || CGCTGGCCAT TTTCCATTAT CGCTGGCATA TCTCGTTATA TACACAGAAG TGTATAGATT 238 CTGTTTCTGT TTTGTATAAA GCGAGAGAAA ATTGTATATA CACATGCAAA AATGTATATC 68535 ||||| | | |||||||||| |||||||||| |||||||||| |||||| || ||| |||||| ATGTTTATAT TTTGTATAAA GCGAGAGAAA ATTGTATATA CACATGTGAA AATATATATC 298 TTTGTGTTAT ACGCTTAATT ATATAATTTA CAAACATTTT ACTTCAAATA TTGCAGAGAA 68595 || ||||||| || ||||||| ||| || ||| |||||||||| |||||||||| | |||| ||| TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT ACTTCAAATA TGGCAGTGAA 358 AAATGCCAAA GAATTATACA ATTGTGAATT ATATAATTGC AGTGAAATAC AGTTTTTTCT 68655 ||| ||||| ||||||| || |||||||||| |||||||||| |||||||||| | |||| ||| AAAGGCCAAG GAATTATGCA ATTGTGAATT ATATAATTGC AGTGAAATAC AATTTTGTCT 418 AGCTTTATAC AACAGAAGTG TATATCTTGT GTTTCTGTTT TTGTATAAAG CGAG--AAAA 68713 | |||||||| |||||||||| ||||| |||| |||| ||||| | |||||||| |||| |||| AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT TAGTATAAAG CGAGACAAAA 478 ACATATATCT TCTTGCTATA CACTTATAAT TATGCAATAT ACATACATTT TA 68765 |||||||| | |||||| || | |||||||| |||||||||| |||||||||| || ACATATATAT TCTTGCCATG CGCTTATAAT TATGCAATAT ACATACATTT TA 530 hqPGS_C08HBa0060C12.1+_SGN-E393065- (68299 68765) ******************************************************************************** EST sequence 411 -strand 450 n (File: SGN-E200845-) 1 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 61 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 121 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 181 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 241 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 301 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 361 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 421 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 66474 to 69364): Exon 1 68319 68764 ( 446 n); cDNA 1 450 ( 450 n); score: 0.891 MATCH C08HBa0060C12.1+ SGN-E200845- 0.891 446 0.991 C PGS_C08HBa0060C12.1+_SGN-E200845- (68319 68764) Alignment (genomic DNA sequence = upper lines): CTAATAATCT AAATTAAATA GAATAGCTAG GGTTTGATTT AATTGTGCTC CATAGCAAAC 68378 ||| |||||| || ||||| || ||||||| ||||||||| |||||||||| |||||||||| CTAGTAATCT AA-CTAAATG GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC 59 ATTGGCAAAA ATTTGCCAGG CGTCTCTCTC CCAGAAGTCT CGCTCGCCAC TCT-C--TCA 68435 || || ||| |||| |||| |||||| ||| ||| || ||| |||||||||| ||| | || GTTAGCTAAA GTTTGTCAGG CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT 119 TTCTCGCCTC TCTCGCTTTA TACACAGAAG TGTATAATTT CTGTTTCTGT TTTGTATAAA 68495 ||||||| ||||||| || |||||||||| ||||||| || |||||||| | |||||||||| CGCTCGCCTA TCTCGCTATA TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA 179 GCGAGAGAAA ATTGTATATA CACATGCAAA AATGTATATC TTTGTGTTAT ACGCTTAATT 68555 |||||||||| |||||||||| |||||| ||| ||| |||||| || ||||||| || ||||||| GCGAGAGAAA ATTGTATATA CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT 239 ATATAATTTA CAAACATTTT ACTTCAAATA TTGCAGAGAA AAATGCCAAA GAATTATACA 68615 ||| || ||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| ATACAAATTA CAAACATTTT ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA 299 ATTGTGAATT ATATAATTGC AGTGAAATAC AGTTTTTTCT AGCTTTATAC AACAGAAGTG 68675 |||||||||| |||||||||| |||||||||| | |||| ||| | |||||||| |||||||||| ATTGTGAATT ATATAATTGC AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG 359 TATATCTTGT GTTTCTGTTT TTGTATAAAG CGAG--AAAA ACATATATCT TCTTGCTATA 68733 ||||| |||| |||| ||||| |||||||||| |||| |||| |||||||| | |||||| ||| TATATATTGT GTTTTTGTTT TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA 419 CACTTATAAT TATGCAATAT ACATACATTT T 68764 |||||||||| |||||||||| |||||||||| | CACTTATAAT TATGCAATAT ACATACATTT T 450 hqPGS_C08HBa0060C12.1+_SGN-E200845- (68319 68764) ******************************************************************************** EST sequence 376 -strand 325 n (File: SGN-E393076-) 1 CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 61 AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 121 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 181 ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 241 TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 301 AATTATGCAA TATACATACA TTTTA Predicted gene structure (within gDNA segment 67455 to 69365): Exon 1 68443 68765 ( 323 n); cDNA 1 325 ( 325 n); score: 0.907 MATCH C08HBa0060C12.1+ SGN-E393076- 0.907 323 0.994 C PGS_C08HBa0060C12.1+_SGN-E393076- (68443 68765) Alignment (genomic DNA sequence = upper lines): CTCTCTCGCT TTATACACAG AAGTGTATAA TTTCTGTTTC TGTTTTGTAT AAAGCGAGAG 68502 || ||||||| |||||||| || |||| |||||||| | |||||||| |||||||||| CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 60 AAAATTGTAT ATACACATGC AAAAATGTAT ATCTTTGTGT TATACGCTTA ATTATATAAT 68562 |||||||||| ||||||||| |||||| ||| ||||| |||| ||||| |||| |||||| || AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 120 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAATGCC AAAGAATTAT ACAATTGTGA 68622 |||||||||| |||||||||| |||||||||| |||||| ||| || ||||||| |||||||||| TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 180 ATTATATAAT TGCAGTGAAA TACAGTTTTT TCTAGCTTTA TACAACAGAA GTGTATATCT 68682 |||||||||| |||||||||| |||| |||| |||| ||||| |||||||||| |||||||| | ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 240 TGTGTTTCTG TTTTTGTATA AAGCGAG--A AAAACATATA TCTTCTTGCT ATACACTTAT 68740 ||||||| || |||||||||| ||||||| | |||||||||| | ||||||| |||||||||| TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 300 AATTATGCAA TATACATACA TTTTA 68765 |||||||||| |||||||||| ||||| AATTATGCAA TATACATACA TTTTA 325 hqPGS_C08HBa0060C12.1+_SGN-E393076- (68443 68765) ******************************************************************************** EST sequence 375 -strand 308 n (File: SGN-E393075-) 1 AAAAAAAAAA AAACCTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG TATATACACA 61 TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA CATTTTACTT 121 CAAATATTGC AGAGAAAAAG GCCAACGAAT TATACAATTG TGAATTATAT AATTGCAGTG 181 AAATACAATT TTCTCTAACT TTATACAACA GAAGTGTATA TATTGTGTTT TTGTTTTTGT 241 ATAAAGCGAG ACAAAAACAT ATATATTCTT GCCATACACT TATAATTATG CAATATACAT 301 ACATTTTA Predicted gene structure (within gDNA segment 67625 to 69365): Exon 1 68475 68765 ( 291 n); cDNA 16 308 ( 293 n); score: 0.928 MATCH C08HBa0060C12.1+ SGN-E393075- 0.928 291 0.945 C PGS_C08HBa0060C12.1+_SGN-E393075- (68475 68765) Alignment (genomic DNA sequence = upper lines): TCTGTTTCTG TTTTGTATAA AGCGAGAGAA AATTGTATAT ACACATGCAA AAATGTATAT 68534 ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||| ||||| TCTGTTTCTA TTTTGTATAA AGCGAGAGAA AATTGTATAT ACACATGTAA AAATATATAT 75 CTTTGTGTTA TACGCTTAAT TATATAATTT ACAAACATTT TACTTCAAAT ATTGCAGAGA 68594 ||| |||||| ||| |||||| |||| || || |||||||||| |||||||||| |||||||||| CTTCGTGTTA TACACTTAAT TATACAAATT ACAAACATTT TACTTCAAAT ATTGCAGAGA 135 AAAATGCCAA AGAATTATAC AATTGTGAAT TATATAATTG CAGTGAAATA CAGTTTTTTC 68654 |||| ||||| ||||||||| |||||||||| |||||||||| |||||||||| || |||| || AAAAGGCCAA CGAATTATAC AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC 195 TAGCTTTATA CAACAGAAGT GTATATCTTG TGTTTCTGTT TTTGTATAAA GCGAG--AAA 68712 || ||||||| |||||||||| |||||| ||| ||||| |||| |||||||||| ||||| ||| TAACTTTATA CAACAGAAGT GTATATATTG TGTTTTTGTT TTTGTATAAA GCGAGACAAA 255 AACATATATC TTCTTGCTAT ACACTTATAA TTATGCAATA TACATACATT TTA 68765 ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||| AACATATATA TTCTTGCCAT ACACTTATAA TTATGCAATA TACATACATT TTA 308 hqPGS_C08HBa0060C12.1+_SGN-E393075- (68475 68765) ******************************************************************************** EST sequence 377 -strand 153 n (File: SGN-E392727-) 1 AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 61 GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 121 ACACTTATAA TTATGCAATA TACATACATA TTA Predicted gene structure (within gDNA segment 68005 to 69401): Exon 1 68615 68765 ( 151 n); cDNA 1 153 ( 153 n); score: 0.887 MATCH C08HBa0060C12.1+ SGN-E392727- 0.887 151 0.987 C PGS_C08HBa0060C12.1+_SGN-E392727- (68615 68765) Alignment (genomic DNA sequence = upper lines): AATTGTGAAT TATATAATTG CAGTGAAATA CAGTTTTTTC TAGCTTTATA CAACAGAAGT 68674 |||||||||| |||||||||| |||||||||| || |||| || || ||||||| |||||||||| AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 60 GTATATCTTG TGTTTCTGTT TTTGTATAAA GCGAGA--AA AACATATATC TTCTTGCTAT 68732 |||||| ||| ||||| | |||||||||| ||| || || ||||||||| ||||||| || GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 120 ACACTTATAA TTATGCAATA TACATACATT TTA 68765 |||||||||| |||||||||| ||||||||| ||| ACACTTATAA TTATGCAATA TACATACATA TTA 153 hqPGS_C08HBa0060C12.1+_SGN-E392727- (68615 68765) ******************************************************************************** EST sequence 40 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 68944 to 72243): Exon 1 69625 70059 ( 435 n); cDNA 1 435 ( 435 n); score: 0.931 Intron 1 70060 70446 ( 387 n); Pd: 1.000 (s: 0.96), Pa: 0.951 (s: 0.74) Exon 2 70447 70733 ( 287 n); cDNA 436 722 ( 287 n); score: 0.829 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.891 722 1.000 C PGS_C08HBa0060C12.1+_SGN-E378935+ (69625 70059,70447 70733) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAATTACTT GTATAGTCAG AAGGGTTTAC CAGTGAATGT TGGTGAACAG 69684 |||| ||| | |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ACGTTCTTGA CTATTCTTAA TGTGATTACA AGCATGTTAT GGGGTGGTAC AGTGAAGGGT 69744 | |||||||| || | ||||| |||||| ||| |||||||||| |||| || || |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGTATTGG AGCGGAGTTT AGGCATGTTG TGACTGGGAT AGCTCAGTTG 69804 |||||||||| ||| | |||| ||| |||||| |||||||||| |||||| ||| |||| ||||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 GTCAGTATTC CCAATCTTTC CGATTTTTAC CCAGGCTTGG CTTGGTTTGA TTTCCAGGGT 69864 ||||||||| |||||||||| ||||||||| || ||||||| | |||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTATAAAGA AGATGAAGGT GTTGGCAAAG CGATTTGATA AGATATTTGA GAGCATGATT 69924 |||||||||| |||| ||||| |||| |||| ||||||||| |||||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGGA CAGAAATGGT GTTGGCCAAG AAATCAAAGA CTTTTTGCAA 69984 |||||||||| ||||||| || |||||||||| |||||||||| ||| |||||| |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTAA AGTTGAAAGA TGAAGCAGAT CCCGAAATGC CTCTGACCAT GACTGAAATC 70044 |||||||| | |||||||||| |||||||||| || |||||| |||||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCAATT GTGCATTCTA CTAAATATTC ATAACTGCAT 70104 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TATTATTGAG CAGCCAAGAT TGCATTTGTC TTTCACCATT CACACTGGCT TACACTGATC 70164 .......... .......... .......... .......... .......... .......... 435 ATGATGGCAG ATCTTTTCTT TTTTTATATT AAAAGGATCA AATGCCATAT AAGTTCATAT 70224 .......... .......... .......... .......... .......... .......... 435 TAGGATTGTA AATGTATTGA GTAATAAATA TTATATTAAT ACGTTCATGT CCTGAACAGT 70284 .......... .......... .......... .......... .......... .......... 435 TAATTGCTAC CCTGTTATGG ACTGGATTAA AGAAAGAGTC GGCTTATTTA GGATCAGATT 70344 .......... .......... .......... .......... .......... .......... 435 ATATGTGAGA CTTTACTGTG AATTAAGACG CTGAGTCTTG AACTTAACTC CAATATACAG 70404 .......... .......... .......... .......... .......... .......... 435 TTTGTTGTAA CATGATAATA ACTTCAAAAG TACTATGGAC AGGAAATGGT TCTTGGTGGA 70464 || |||| | | |||||| .......... .......... .......... .......... ..GATTTGGT TGTCGGTGGA 453 ACTGACACTT CCGTCAACAC AATTGAGTTT GTCATGGCTG AAATTATGCA TAAACCGGAT 70524 |||||||| | |||| | |||||||| | |||||||| ||||| || | ||||| ||| ACTGACACAA CTTCCAACGC GGTTGAGTTT GCCATGGCTG AAATTTTGAA CAAACCAGAT 513 ATCCTGAGGA AATTACAACA AGAAGTAGAT ACAGTTGTGG GAAAAAATAA TATTGTGGAA 70584 |||||||| | || ||||||| |||||||||| |||||||||| ||||| |||| || |||||| ATCCTGAGAA AAATACAACA AGAAGTAGAT ACAGTTGTGG GAAAAGATAA CATAGTGGAA 573 GAGTCTCATA TTCAGAAATT ACCATATCTC AATGCAGTGA TGAAAGAAGT GTTGCGCCTA 70644 |||||||||| |||| | || |||||||||| ||||||||| ||||||||| ||||| || GAGTCTCATA TTCAACAGTT ACCATATCTC TATGCAGTGA TGAAAGAAGC CATGCGCATA 633 CATCCAGCTG CTCCACTACT GATACCACAT TGTCCTAGTG AAACATGCAC TGTGGGAGGT 70704 |||||||| ||||| | | || ||| |||||||||| | ||| ||| ||| || || CATCCAGCCC TCCCACTCTT GGCTCCTCAT TGTCCTAGTG AGACAATCAC TGTTGGTGGA 693 TACACTGTTC CTAAAGGATC TTGTATTTT 70733 |||||||||| ||||||| || | || |||| TACACTGTTC CTAAAGGGTC TCGTGTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (69625 70059,70447 70733) ******************************************************************************** EST sequence 184 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 68944 to 71690): Exon 1 69625 70059 ( 435 n); cDNA 1 435 ( 435 n); score: 0.931 Intron 1 70060 70446 ( 387 n); Pd: 1.000 (s: 0.96), Pa: 0.951 (s: 0.74) Exon 2 70447 70549 ( 103 n); cDNA 436 538 ( 103 n); score: 0.816 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.909 538 1.000 C PGS_C08HBa0060C12.1+_SGN-E206806+ (69625 70059,70447 70549) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAATTACTT GTATAGTCAG AAGGGTTTAC CAGTGAATGT TGGTGAACAG 69684 |||| ||| | |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ACGTTCTTGA CTATTCTTAA TGTGATTACA AGCATGTTAT GGGGTGGTAC AGTGAAGGGT 69744 | |||||||| || | ||||| |||||| ||| |||||||||| |||| || || |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGTATTGG AGCGGAGTTT AGGCATGTTG TGACTGGGAT AGCTCAGTTG 69804 |||||||||| ||| | |||| ||| |||||| |||||||||| |||||| ||| |||| ||||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 GTCAGTATTC CCAATCTTTC CGATTTTTAC CCAGGCTTGG CTTGGTTTGA TTTCCAGGGT 69864 ||||||||| |||||||||| ||||||||| || ||||||| | |||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTATAAAGA AGATGAAGGT GTTGGCAAAG CGATTTGATA AGATATTTGA GAGCATGATT 69924 |||||||||| |||| ||||| |||| |||| ||||||||| |||||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGGA CAGAAATGGT GTTGGCCAAG AAATCAAAGA CTTTTTGCAA 69984 |||||||||| ||||||| || |||||||||| |||||||||| ||| |||||| |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTAA AGTTGAAAGA TGAAGCAGAT CCCGAAATGC CTCTGACCAT GACTGAAATC 70044 |||||||| | |||||||||| |||||||||| || |||||| |||||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCAATT GTGCATTCTA CTAAATATTC ATAACTGCAT 70104 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TATTATTGAG CAGCCAAGAT TGCATTTGTC TTTCACCATT CACACTGGCT TACACTGATC 70164 .......... .......... .......... .......... .......... .......... 435 ATGATGGCAG ATCTTTTCTT TTTTTATATT AAAAGGATCA AATGCCATAT AAGTTCATAT 70224 .......... .......... .......... .......... .......... .......... 435 TAGGATTGTA AATGTATTGA GTAATAAATA TTATATTAAT ACGTTCATGT CCTGAACAGT 70284 .......... .......... .......... .......... .......... .......... 435 TAATTGCTAC CCTGTTATGG ACTGGATTAA AGAAAGAGTC GGCTTATTTA GGATCAGATT 70344 .......... .......... .......... .......... .......... .......... 435 ATATGTGAGA CTTTACTGTG AATTAAGACG CTGAGTCTTG AACTTAACTC CAATATACAG 70404 .......... .......... .......... .......... .......... .......... 435 TTTGTTGTAA CATGATAATA ACTTCAAAAG TACTATGGAC AGGAAATGGT TCTTGGTGGA 70464 || |||| | | |||||| .......... .......... .......... .......... ..GATTTGGT TGTCGGTGGA 453 ACTGACACTT CCGTCAACAC AATTGAGTTT GTCATGGCTG AAATTATGCA TAAACCGGAT 70524 |||||||| | |||| | |||||||| | |||||||| ||||| || | ||||| ||| ACTGACACAA CTTCCAACGC GGTTGAGTTT GCCATGGCTG AAATTTTGAA CAAACCAGAT 513 ATCCTGAGGA AATTACAACA AGAAG 70549 |||||||| | || ||||||| ||||| ATCCTGAGAA AAATACAACA AGAAG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (69625 70059,70447 70549) ******************************************************************************** EST sequence 154 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 68957 to 71511): Exon 1 69658 70059 ( 402 n); cDNA 3 404 ( 402 n); score: 0.881 Intron 1 70060 70446 ( 387 n); Pd: 1.000 (s: 0.94), Pa: 0.951 (s: 0.82) Exon 2 70447 70512 ( 66 n); cDNA 405 470 ( 66 n); score: 0.848 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.876 468 0.992 C PGS_C08HBa0060C12.1+_SGN-E205363+ (69658 70059,70447 70512) Alignment (genomic DNA sequence = upper lines): GGTTTACCAG TGAATGTTGG TGAACAGACG TTCTTGACTA TTCTTAATGT GATTACAAGC 69717 || | || | |||||||||| |||||||| | || |||||| |||||||| |||||||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GTGGTACAGT GAAGGGTGAG GAAAGAGCTA GTATTGGAGC GGAGTTTAGG 69777 |||||||||| |||| ||||| |||||||||| |||||||||| | |||| || ||| ||||| ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 CATGTTGTGA CTGGGATAGC TCAGTTGGTC AGTATTCCCA ATCTTTCCGA TTTTTACCCA 69837 ||||||||| || ||| | || || | || ||| | |||||||||| ||||||||| GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 GGCTTGGCTT GGTTTGATTT CCAGGGTGTT ATAAAGAAGA TGAAGGTGTT GGCAAAGCGA 69897 || ||||| | |||||||||| ||||||||| | |||||||| |||| ||||| ||||||| || GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TTTGATAAGA TATTTGAGAG CATGATTGAT CAAAGACAAA AATTGGACAG AAATGGTGTT 69957 | |||||| | |||||||||| |||||||||| |||||||||| || || | || |||||| ||| TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACAAA AAATGAATAG AAATGGGGTT 302 GGCCAAGAAA TCAAAGACTT TTTGCAAGTT TTGCTAAAGT TGAAAGATGA AGCAGATCCC 70017 |||||||||| ||| ||||| |||||||||| ||||| |||| |||||||||| |||||||||| GGCCAAGAAA GCAAGGACTT TTTGCAAGTT TTGCTGAAGT TGAAAGATGA AGCAGATCCC 362 GAAATGCCTC TGACCATGAC TGAAATCAAA GCCTTACTTA TGGTATGTTT ATCAATTGTG 70077 ||||||||| |||||||||| |||| ||||| |||||||||| | AAAATGCCTC TGACCATGAC TGAACTCAAA GCCTTACTTA CG........ .......... 404 CATTCTACTA AATATTCATA ACTGCATTAT TATTGAGCAG CCAAGATTGC ATTTGTCTTT 70137 .......... .......... .......... .......... .......... .......... 404 CACCATTCAC ACTGGCTTAC ACTGATCATG ATGGCAGATC TTTTCTTTTT TTATATTAAA 70197 .......... .......... .......... .......... .......... .......... 404 AGGATCAAAT GCCATATAAG TTCATATTAG GATTGTAAAT GTATTGAGTA ATAAATATTA 70257 .......... .......... .......... .......... .......... .......... 404 TATTAATACG TTCATGTCCT GAACAGTTAA TTGCTACCCT GTTATGGACT GGATTAAAGA 70317 .......... .......... .......... .......... .......... .......... 404 AAGAGTCGGC TTATTTAGGA TCAGATTATA TGTGAGACTT TACTGTGAAT TAAGACGCTG 70377 .......... .......... .......... .......... .......... .......... 404 AGTCTTGAAC TTAACTCCAA TATACAGTTT GTTGTAACAT GATAATAACT TCAAAAGTAC 70437 .......... .......... .......... .......... .......... .......... 404 TATGGACAGG AAATGGTTCT TGGTGGAACT GACACTTCCG TCAACACAAT TGAGTTTGTC 70497 | | |||||| | |||||||||| || ||| | ||||||| | |||||||| | .........G ATATGGTTGT TGGTGGAACT GAAACTAGTG CCAACACAGT TGAGTTTGCC 455 ATGGCTGAAA TTATG 70512 ||| |||||| ||||| ATGACTGAAA TTATG 470 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (69658 70059,70447 70512) ******************************************************************************** EST sequence 325 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 68578 to 76203): Exon 1 70016 70059 ( 44 n); cDNA 1 44 ( 44 n); score: 0.977 Intron 1 70060 70446 ( 387 n); Pd: 1.000 (s: 0.98), Pa: 0.951 (s: 0.74) Exon 2 70447 71130 ( 684 n); cDNA 45 728 ( 684 n); score: 0.835 MATCH C08HBa0060C12.1+ SGN-E378974- 0.835 728 1.000 C PGS_C08HBa0060C12.1+_SGN-E378974- (70016 70059,70447 71130) Alignment (genomic DNA sequence = upper lines): CCGAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGTATGT TTATCAATTG 70075 || ||||||| |||||||||| |||||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 TGCATTCTAC TAAATATTCA TAACTGCATT ATTATTGAGC AGCCAAGATT GCATTTGTCT 70135 .......... .......... .......... .......... .......... .......... 44 TTCACCATTC ACACTGGCTT ACACTGATCA TGATGGCAGA TCTTTTCTTT TTTTATATTA 70195 .......... .......... .......... .......... .......... .......... 44 AAAGGATCAA ATGCCATATA AGTTCATATT AGGATTGTAA ATGTATTGAG TAATAAATAT 70255 .......... .......... .......... .......... .......... .......... 44 TATATTAATA CGTTCATGTC CTGAACAGTT AATTGCTACC CTGTTATGGA CTGGATTAAA 70315 .......... .......... .......... .......... .......... .......... 44 GAAAGAGTCG GCTTATTTAG GATCAGATTA TATGTGAGAC TTTACTGTGA ATTAAGACGC 70375 .......... .......... .......... .......... .......... .......... 44 TGAGTCTTGA ACTTAACTCC AATATACAGT TTGTTGTAAC ATGATAATAA CTTCAAAAGT 70435 .......... .......... .......... .......... .......... .......... 44 ACTATGGACA GGAAATGGTT CTTGGTGGAA CTGACACTTC CGTCAACACA ATTGAGTTTG 70495 || ||||| | ||||||| ||||||| | |||| | ||||||||| .......... .GATTTGGTT GTCGGTGGAA CTGACACAAC TTCCAACGCG GTTGAGTTTG 93 TCATGGCTGA AATTATGCAT AAACCGGATA TCCTGAGGAA ATTACAACAA GAAGTAGATA 70555 ||||||||| |||| || | ||||| |||| ||||||| || | |||||||| |||||||||| CCATGGCTGA AATTTTGAAC AAACCAGATA TCCTGAGAAA AATACAACAA GAAGTAGATA 153 CAGTTGTGGG AAAAAATAAT ATTGTGGAAG AGTCTCATAT TCAGAAATTA CCATATCTCA 70615 |||||||||| |||| |||| || ||||||| |||||||||| ||| | ||| ||||||||| CAGTTGTGGG AAAAGATAAC ATAGTGGAAG AGTCTCATAT TCAACAGTTA CCATATCTCT 213 ATGCAGTGAT GAAAGAAGTG TTGCGCCTAC ATCCAGCTGC TCCACTACTG ATACCACATT 70675 |||||||||| |||||||| ||||| ||| ||||||| ||||| || || |||| ATGCAGTGAT GAAAGAAGCC ATGCGCATAC ATCCAGCCCT CCCACTCTTG GCTCCTCATT 273 GTCCTAGTGA AACATGCACT GTGGGAGGTT ACACTGTTCC TAAAGGATCT TGTATTTTCA 70735 |||||||||| ||| |||| || || || | |||||||||| |||||| ||| || |||| GTCCTAGTGA GACAATCACT GTTGGTGGAT ACACTGTTCC TAAAGGGTCT CGTGTTTTTG 333 TAAATGTTTG GGCTATACAC AGAGATGCTT CTATCTGGAA AAATCCAACA GAGTTCCGTC 70795 ||||||| || |||||||||| |||||| ||| |||| ||||| |||||||||| |||||| ||| TAAATGTATG GGCTATACAC AGAGATCCTT CTATGTGGAA AAATCCAACA GAGTTCTGTC 393 CAGAGAGGTT TTTGGACAAT AAATGGGATT ATAGCGGAAA AGATTTGAAC TATTTCCCAT 70855 ||||||| || |||||| ||| |||||| ||| |||| ||||| ||||| ||| |||||||||| CAGAGAGATT TTTGGATAAT AAATGGAATT ATAGTGGAAA TGATTTCAAC TATTTCCCAT 453 TTGGTTCTGG AAGAAGAATC TGTGCAGGGA TAGGCATGGC AGAGAGGATG TTCATGTATT 70915 |||||||||| |||||||| ||||| |||| ||| |||||| |||||||||| |||||||||| TTGGTTCTGG CAGAAGAATG TGTGCGGGGA TAGCCATGGC AGAGAGGATG TTCATGTATT 513 CACTGGCTTC ACTCGTTCAT TCTTTTGATT GGAAATTGCC CCAAGGAGTG ACATCAGACG 70975 |||||||||| |||| ||||| ||||| |||| |||||||||| |||||| | || | |||| CACTGGCTTC ACTCATTCAT TCTTTCGATT GGAAATTGCC TGAAGGAGAG ACGTTAGACC 573 TTACAGAGAC GTTTGGTCTT AATTTGAGGA AAAAAATTCC TCTGGTGGCT ATACCTACTC 71035 ||| ||||| |||| || || ||||| || | ||||| || |||||||||| |||||||||| TTAAAGAGAA GTTTTGTATT GCTTTGAAGA AGAAAATGCC TCTGGTGGCT ATACCTACTC 633 CAAGATTGTC CAATCCAACA CTGTATGAGT AAGATAAAAA TGTATCTGTT GAGAGTCGTG 71095 |||||||||| |||||||||| | |||||||| |||||||||| |||||| | || | CAAGATTGTC CAATCCAACA CAGTATGAGT AAGATAAAAA TGTATCACTG TTATGTGCTA 693 TTCCGTATGA TGATTCTGTC TTTTGTATGA TGAAT 71130 | | | | | |||| | ||||| ATGTCTTTCA AAGACAAATG ATTTGAACAT TGAAT 728 hqPGS_C08HBa0060C12.1+_SGN-E378974- (70016 70059,70447 71130) ******************************************************************************** EST sequence 87 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 68281 to 71078): Exon 1 69115 69927 ( 813 n); cDNA 1 813 ( 813 n); score: 0.889 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.889 813 0.999 C PGS_C08HBa0060C12.1+_SGN-E553649+ (69115 69927) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCG AATTCTTCAA ACCCCGTTTT GATTCTTTCC CATGGCCTCT TCAACAACTC 69174 ||||||||| |||||||||| ||||| |||| |||||||||| ||||||| || |||||||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATGTTGAGC AAAAGGGTGT GTTTTTCTCC TGTTTTCTTG GGTTTTTAGC TTTGCTTTGG 69234 |||||||||| || ||| | | ||||||| | |||||||||| | |||||||| ||| |||||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TTTTTTATCA GAAACTCAAT CAAGGGATTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 69294 ||||| |||| | ||||| | ||| || || |||||||||| |||||||||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GGTAATCTTC ATTCTCTTGA TCCTCAACTT CACACCTATT TTGCATCTCT GTCCCAAACT 69354 |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| |||||||| | GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 240 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT AAAAAACTTG GAATTATTAT TACTTCTCCT 69414 |||||||||| |||||||||| |||||||||| ||||||||| | |||||||| |||||| || TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 300 GCTTTAGCTC GCGAGGTTCT TAAGGATAAA GATACCATTT TTGCTAACAG AGATGTCCCT 69474 | ||||||| |||| ||||| ||||||||| |||| |||| |||||||||| ||| || ||| GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 360 GCTGCTGGAA GCGAATTTTC ATATGGTGGC AAAAACATAC TTTGGACTCC TTATGGACCG 69534 ||||||| | ||| |||| ||||||| || || |||||| |||||| | | ||||||||| GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 420 AAATGGCGCA TGTTGAGGAA AATTTGTGTT CGCGATATGC TTAGTTCTTC TACTTTAGAT 69594 ||||||| | || |||| || |||||||| |||||||||| |||||| ||| |||||||||| CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 480 TCGGTGTATG CACTAAGGAG AAGGGAGGTT AGACAATCGA TCAATTACTT GTATAGTCAG 69654 || || | || |||||||| | ||||||| || |||||||||| | |||||||| |||||| || TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 540 AAGGGTTTAC CAGTGAATGT TGGTGAACAG ACGTTCTTGA CTATTCTTAA TGTGATTACA 69714 |||||||||| ||||||| || |||||| ||| | |||||||| || | |||| |||||||||| AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 600 AGCATGTTAT GGGGTGGTAC AGTGAAGGGT GAGGAAAGAG CTAGTATTGG AGCGGAGTTT 69774 |||||||||| ||||| | || |||||||||| |||||||||| ||| | |||| || |||||| AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 660 AGGCATGTTG TGACTGGGAT AGCTCAGTTG GTCAGTATTC CCAATCTTTC CGATTTTTAC 69834 ||| |||||| ||| || ||| ||| | || |||||||| |||||||||| |||||| ||| AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 720 CCAGGCTTGG CTTGGTTTGA TTTCCAGGGT GTTATAAAGA AGATGAAGGT GTTGGCAAAG 69894 ||||| |||| | |||||||| |||||||||| |||| ||||| |||||||| | | || |||| CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 780 CGATTTGATA AGATATTTGA GAGCATGATT GAT 69927 ||||||| | |||||||||| ||||||||| ||| AGATTTGAGA AGATATTTGA TAGCATGATT GAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (69115 69927) ******************************************************************************** EST sequence 101 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 67265 to 71757): Exon 1 69121 69892 ( 772 n); cDNA 1 770 ( 770 n); score: 0.863 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.863 772 1.000 C PGS_C08HBa0060C12.1+_SGN-E554337+ (69121 69892) Alignment (genomic DNA sequence = upper lines): CTCGAATTCT -TCAAAC-C- CCGTTTTGAT TCTTTCCCAT GGC-CTCTTC AACAACTCAA 69176 ||| ||||| |||||| | || |||||| |||||||||| ||| | ||| |||| ||||| CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 60 TGTTGAGCA- AAAGGGTGTG TTTTTCTCCT GTTTTCTTGG GTTTTTAGCT TTGCTTTGGT 69235 || |||| | |||| ||| ||||||||| ||||| |||| ||||||||| || ||||||| TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 120 TTTTTATCAG AAACTCAATC AAGGGATTGC CACCAGGGCC TAAAGCTTTG CCCTTGATAG 69295 ||| ||||| ||||||| | |||||||||| |||||||||| |||| ||||| |||||||||| GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 180 GTAATCTTCA TTCTCTTGAT CCTCAACTTC ACACCTATTT TGCATCTCTG TCCCAAACTT 69355 ||||||| | ||||||||| | | | ||||||||| ||||||||| |||||||||| GTAATCTCTA TTCTCTTGA- --T---C--C -CACCTATTT TGCATCTCTT TCCCAAACTT 231 ATGGCCCCAT TTGTAGAATC TGGCTTGGTA AAAAACTTGG AATTATTATT ACTTCTCCTG 69415 |||||||||| ||||||| || |||||||||| ||||| |||| ||||||||| ||||| ||| ATGGCCCCAT TTGTAGACTC TGGCTTGGTA AAAAAGTTGG GATTATTATT ACTTCACCTA 291 CTTTAGCTCG CGAGGTTCTT AAGGATAAAG ATACCATTTT TGCTAACAGA GATGTCCCTG 69475 | |||||||| ||||||||| |||||||||| | |||||||| |||||||||| |||||||| | CCTTAGCTCG TGAGGTTCTT AAGGATAAAG ACACCATTTT TGCTAACAGA GATGTCCCAG 351 CTGCTGGAAG CGAATTTTCA TATGGTGGCA AAAACATACT TTGGACTCCT TATGGACCGA 69535 |||||| || ||||| ||| |||||||||| | | |||||| |||||||||| |||||||||| CTGCTGCAAA AGAATTATCA TATGGTGGCA ATAGCATACT TTGGACTCCT TATGGACCGA 411 AATGGCGCAT GTTGAGGAAA ATTTGTGTTC GCGATATGCT TAGTTCTTCT ACTTTAGATT 69595 ||||| | || ||||||||| |||| |||| || ||||||| ||||| |||| |||||||||| AATGGAGAAT GTTGAGGAAG GTTTGCGTTC GCAATATGCT TAGTTATTCT ACTTTAGATT 471 CGGTGTATGC ACTAAGGAGA AGGGAGGTTA GACAATCGAT CAATTACTTG TATAGTCAGA 69655 | || ||||| |||||||| | |||||| ||| |||||||||| ||||||||| || ||||||| CTGTTTATGC ACTAAGGAAA AGGGAGCTTA GACAATCGAT CAATTACTTC TACAGTCAGA 531 AGGGTTTACC AGTGAATGTT GGTGAACAGA CGTTCTTGAC TATTCTTAAT GTGATTACAA 69715 |||||||||| ||| |||||| ||||| |||| |||||||| | |||||| |||||||||| AGGGTTTACC AGTAAATGTT GGTGAGCAGA TGTTCTTGAG TTCACTTAAT GTGATTACAA 591 GCATGTTATG GGGTGGTACA GTGAAGGGTG AGGAAAGAGC TAGTATTGGA GCGGAGTTTA 69775 |||||||||| |||||| ||| |||||||||| |||||||||| || | ||||| || ||||||| GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGA GCTGAGTTTA 651 GGCATGTTGT GACTGGGATA GCTCAGTTGG TCAGTATTCC CAATCTTTCC GATTTTTACC 69835 ||||| |||| |||| || ||| | ||| |||||||||| |||| |||| |||||||||| GGCATATTGT CACTGAAATG GCTGCGCTGG TCAGTATTCC CAATTATTCC GATTTTTACC 711 C-AGGCTTGG CTTGGTTTGA TTTCCAGGGT GTTATAAAGA AGATG-AAGG TGTTGGCAA 69892 | ||||||| | |||||||| |||||| ||| ||| ||| | ||||| |||| ||||||||| CGGGGCTTGG CCTGGTTTGA TTTCCAAGGT GTTGCAAAAA AGATGAAAGG TGTTGGCAA 770 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (69121 69892) ******************************************************************************** EST sequence 129 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 68682 to 70467): Exon 1 69282 69767 ( 486 n); cDNA 1 486 ( 486 n); score: 0.881 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.881 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (69282 69767) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGTAATC TTCATTCTCT TGATCCTCAA CTTCACACCT ATTTTGCATC 69341 |||||||||| |||||||||| | |||||||| ||| |||||| |||||||||| |||| ||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTGTCCCAA ACTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGAATTAT 69401 ||| ||| || | |||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TATTACTTCT CCTGCTTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 69461 | ||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGATGTC CCTGCTGCTG GAAGCGAATT TTCATATGGT GGCAAAAACA TACTTTGGAC 69521 ||||||||| || ||||| | || ||| | | |||||||| || | ||| || ||||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TCCTTATGGA CCGAAATGGC GCATGTTGAG GAAAATTTGT GTTCGCGATA TGCTTAGTTC 69581 |||||||||| || || |||| | |||||||| ||| ||||| |||| || | |||||| | | TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACTTTA GATTCGGTGT ATGCACTAAG GAGAAGGGAG GTTAGACAAT CGATCAATTA 69641 |||||||||| ||| | | | ||||||| || | |||||||| ||||||||| |||| ||||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTGTATAGT CAGAAGGGTT TACCAGTGAA TGTTGGTGAA CAGACGTTCT TGACTATTCT 69701 ||| |||| | |||| || | || ||||| |||||||||| |||| ||| | ||||| || CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATT ACAAGCATGT TATGGGGTGG TACAGTGAAG GGTGAGGAAA GAGCTAGTAT 69761 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||| | | TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGAGC 69767 ||| || TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (69282 69767) ******************************************************************************** EST sequence 55 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 69852 to 73897): Exon 1 70571 71119 ( 549 n); cDNA 3 551 ( 549 n); score: 0.911 Intron 1 71120 71287 ( 168 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0) Exon 2 71288 71308 ( 21 n); cDNA 552 572 ( 21 n); score: 0.857 Intron 2 71309 71629 ( 321 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.69) Exon 3 71630 71684 ( 55 n); cDNA 573 629 ( 57 n); score: 0.682 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.890 625 0.878 C PGS_C08HBa0060C12.1+_SGN-E551573+ (70571 71119,71288 71308,71630 71684) Alignment (genomic DNA sequence = upper lines): ATAATATTGT GGAAGAGTCT CATATTCAGA AATTACCATA TCTCAATGCA GTGATGAAAG 70630 |||||||||| ||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| ATAATATTGT AGAAGAGTCT CATATTCAGC AATTACCATA TCTCTATGCA GTGATGAAAG 62 AAGTGTTGCG CCTACATCCA GCTGCTCCAC TACTGATACC ACATTGTCCT AGTGAAACAT 70690 |||| ||||| | | |||||| ||| |||| | || || | || ||||||||| |||||||||| AAGTATTGCG CATGCATCCA GCTACTCCGC TATTGGTGCC ACATTGTCCA AGTGAAACAT 122 GCACTGTGGG AGGTTACACT GTTCCTAAAG GATCTTGTAT TTTCATAAAT GTTTGGGCTA 70750 |||||||||| ||| |||||| |||||||||| ||||| || | |||||||||| || ||||||| GCACTGTGGG AGGATACACT GTTCCTAAAG GATCTCGTGT TTTCATAAAT GTATGGGCTA 182 TACACAGAGA TGCTTCTATC TGGAAAAATC CAACAGAGTT CCGTCCAGAG AGGTTTTTGG 70810 |||| ||||| | |||||||| |||| ||||| |||||||||| |||||||||| || ||||||| TACAAAGAGA TCCTTCTATC TGGAGAAATC CAACAGAGTT CCGTCCAGAG AGATTTTTGG 242 ACAATAAATG GGATTATAGC GGAAAAGATT TGAACTATTT CCCATTTGGT TCTGGAAGAA 70870 |||||||||| ||||| ||| ||||| |||| | |||||||| ||||||||| ||||| |||| ACAATAAATG GGATTTTAGT GGAAATGATT TCAACTATTT TCCATTTGGT TCTGGCAGAA 302 GAATCTGTGC AGGGATAGGC ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCG 70930 ||||||||| ||||||||| |||||||||| |||||||||| |||| ||||| ||||| ||| GAATCTGTGT GGGGATAGGC ATGGCAGAGA GGATGTTCAT GTATGCACTG GCTTCGCTCA 362 TTCATTCTTT TGATTGGAAA TTGCCCCAAG GAGTGACATC AGACGTTACA GAGACGTTTG 70990 |||||||||| |||||||||| ||||| ||| ||| |||| | |||| ||||| |||| ||||| TTCATTCTTT TGATTGGAAA TTGCCTGAAG GAGAGACACC AGACCTTACA GAGATGTTTG 422 GTCTTAATTT GAGGAAAAAA ATTCCTCTGG TGGCTATACC TACTCCAAGA TTGTCCAATC 71050 | ||| ||| |||||| ||| |||||||||| || ||||||| |||||||||| |||||||||| ATATTACTTT GAGGAAGAAA ATTCCTCTGG TGACTATACC TACTCCAAGA TTGTCCAATC 482 CAACACTGTA TGAGTAAGAT AAAAATGTAT CTGTTGAGAG TCGTGTTCCG TATGATGATT 71110 ||||||| || |||||||||| ||| || ||| |||||||||| |||| ||| | |||||||||| CAACACTCTA TGAGTAAGAT AAAGATATAT CTGTTGAGAG TCGTCTTCTG TATGATGATT 542 CTGTCTTTTG TATGATGAAT TATGGAAATT AATTTGAACT TTCTATGCAG TAAAAGGAAC 71170 |||| || | CTGTATTAT. .......... .......... .......... .......... .......... 551 CATTATTATA TTCTCTCTTA GTGAAAGTTC TCTCAAGGAA GAATTCAGGT TTCCTCATGG 71230 .......... .......... .......... .......... .......... .......... 551 CTAGAGATGA GGTTCATGTT TTTTTCTTTC CTTAACCCTT AACTAAACAC ATCAACTCTC 71290 ||| .......... .......... .......... .......... .......... .......CTC 554 GAAACTAAGC ATTTTCTTTC TAAATATAAT ATTTGGACTT CTCAAAAAGC TCAATATCCA 71350 ||| || || |||||||| GAATCTGTGC ATTTTCTT.. .......... .......... .......... .......... 572 ACGAGATACT TTAATTTTTG TCTCTCCGAA TAAAAGAAAA AAACACTACG GGAACAGTCC 71410 .......... .......... .......... .......... .......... .......... 572 CCATATTGGT ATATCATATA GGTGAATCTT TTTACTAGGG GCTCTGTTCC AGCTAAATGA 71470 .......... .......... .......... .......... .......... .......... 572 AATGATTAAT AGTCACACAG ATGTCTAAAA TTTGGTTTTA TACCACAAGT TTCAAAGTCT 71530 .......... .......... .......... .......... .......... .......... 572 TTTCTTTTTT CCTGAACTTC GTGTCATAAA TTGAGACGCA GGGAGTGAAA GTCACTTTCT 71590 .......... .......... .......... .......... .......... .......... 572 TTGGATGTGA ATTGGTTTGT CCCTTCTAAC TTGTAACAGT TCTATGTAAG CAAATAAC-C 71649 | ||||||||| |||| | | .......... .......... .......... .........T ACTATGTAAG -AAATGTCAC 592 TTTCTTTTC- CT-TTGTTCA AAGTTCAAAT CTATTTT 71684 |||||| || || ||||||| | ||| ||| | | ||| TTTCTTCTCT CTCTTGTTCA ATGTTTAAAC CAACTTT 629 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (70571 71119,71288 71308) ******************************************************************************** EST sequence 301 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 69453 to 73461): Exon 1 70766 71021 ( 256 n); cDNA 1 258 ( 258 n); score: 0.855 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.855 256 0.711 C PGS_C08HBa0060C12.1+_SGN-E234174- (70766 71021) Alignment (genomic DNA sequence = upper lines): CTATCTGGAA AAATCCAACA GAG-TTCCGT CCAGAGAGGT TTTTGGACAA TAAATGGGAT 70824 |||| ||| | |||||| || ||| |||||| |||||||| | |||||||||| ||| |||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TATAGCGGAA AAGATTTGAA CTATTTCCCA TTTGGTTCTG GAAGAAGAAT CTGTGCAGGG 70884 ||||| |||| | ||||| || |||||||||| |||||||||| | |||||||| |||||| ||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTTCA TTCTTTTGAT 70944 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||| || ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CCCAAGGAGT GACATCAGAC GTTACAGAGA CGTTTGGTCT TAATTTGAGG 71004 |||||||||| | |||||| ||||| || | | ||||||| |||||| | | | ||| | TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAAAAAAT-T CCTCTGGT 71021 || || || | | | |||| AAGAAGATGT CTTATGGT 258 hqPGS_C08HBa0060C12.1+_SGN-E234174- (70766 71021) ******************************************************************************** EST sequence 139 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 70060 to 72155): Exon 1 70831 71063 ( 233 n); cDNA 1 233 ( 233 n); score: 0.863 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.863 233 0.879 C PGS_C08HBa0060C12.1+_SGN-E243190+ (70831 71063) Alignment (genomic DNA sequence = upper lines): GGAAAAGATT TGAACTATTT CCCATTTGGT TCTGGAAGAA GAATCTGTGC AGGGATAGGC 70890 ||||| |||| | |||||| | |||||||||| |||||||||| || | || || ||||||||| GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCG TTCATTCTTT TGATTGGAAA 70950 |||||||||| |||||||||| ||||||||| ||||| ||| |||||||||| || |||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCCCAAG GAGTGACATC AGACGTTACA GAGACGTTTG GTCTTAATTT GAGGAAAAAA 71010 ||||| ||| ||| ||| | |||| | ||| |||| ||||| | || | | || ||| ||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATTCCTCTGG TGGCTATACC TACTCCAAGA TTGTCCAATC CAACACTGTA TGA 71063 || ||||||| |||||||||| |||||||||| ||||| ||| ||| ||| || ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (70831 71063) ******************************************************************************** EST sequence 355 +strand 624 n (File: SGN-E398229+) 1 TTTTTGCGAC TTGAAAATTC TCAAGTATAC AAGCAAAGAC TACCTTGGTG AAATATTCTC 61 CAGCAAGCAC AACAAGGTCC CGAGGAGCTG CAAGCGTCAG AGTGTGTCTT AAGAGTTATA 121 CTTTCGTGGT TATATTATAA ATTTGTTCCT AATTTATAAA GGATTCAGAT AGTTTGTTTT 181 TGGTTTGTAA AAGTATAAAT CAGTTAACCC TAACTGATTT AGTGGGCAAC ATTGTTTTGT 241 TGCTTAGTCA AATTCTAAGT CATCTAGGTG GGATGGTTTA GTGGTCAGTG TTGTACCTGC 301 TTAGTCAAAT TCTAAATCAT CTAGAGTTAG GTGGTTTAGC GAGCGATGGG GTCTCCGTTT 361 AGCAAAATCT AAGTTATCTA GGGGTAATAG CTTAGTGGGC AGTGTTGTAT CTGCTTAGGC 421 TTTTCAAGTA ATAGAGTTAT TACATGGTCA TATGATCAAT AACTTCTTCT CACATTGGTT 481 GTAACTGGGT TCACTTTTGC TTAAAAAAGA TTAGAGAAAC AGTTGAAAAT CCTGTGCAAC 541 AGGTCGTGGT TTTACTCCCT TGAGCAAGGA GGTTTCCACG TAAACTGCTT GTGTCGTCTT 601 CTGTTCATCG TTTACTCTTT ATTC Predicted gene structure (within gDNA segment 76056 to 72175): Exon 1 74205 74193 ( 13 n); cDNA 274 286 ( 13 n); score: 0.692 Intron 1 74192 73398 ( 795 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.64) Exon 2 73397 73060 ( 338 n); cDNA 287 619 ( 333 n); score: 0.771 MATCH C08HBa0060C12.1- SGN-E398229+ 0.771 351 0.562 C PGS_C08HBa0060C12.1-_SGN-E398229+ (74205 74193,73397 73060) Alignment (genomic DNA sequence = upper lines): TGTTTTGATG ATCCTCACAA ATGCGGGGAC CTGGTTCCTG GCAGAGTGCT CTCGTCCAGA 74146 || ||| || || TGGTTTAGTG GTC....... .......... .......... .......... .......... 286 TACAAATGGG GTACAGTCAT AAAAGTTGAT ATGTTAGGTG GTAGGTGAAA AGTGCAGTAT 74086 .......... .......... .......... .......... .......... .......... 286 CCTACACCAA TAAGAAGAGC GGACAAGATT GTATGTTTCA GAATCTCACA AATGCAGGGA 74026 .......... .......... .......... .......... .......... .......... 286 CCTAGTACCA GGCAGAGTTT CCTCCATCAG ATACATAATT GGTTACAGCT GTAAAGTTGT 73966 .......... .......... .......... .......... .......... .......... 286 CACGTCAGAG GTTAGTAAGA TGTCAGTGTA CTACACCAAT CAGAATGGAG GAGGGTGTTT 73906 .......... .......... .......... .......... .......... .......... 286 GTCCAATGGA TAATAACTCT TTATATTTGA TACTTTTAGC ATGACAAACA CCATATTATA 73846 .......... .......... .......... .......... .......... .......... 286 TTCATTTATC CAAAGAAGGA AGTCAGCCAG CAAGCCTTTT CAAGAACTCA TATAGAAGTT 73786 .......... .......... .......... .......... .......... .......... 286 TGCAAGGGAC CTGGTTCCCA AAAGCAAGGG ACCTGGTACC CGCAAGACTG TGACGTGAAA 73726 .......... .......... .......... .......... .......... .......... 286 AGGACGAAAA GACAGCTGTC AGAAAAGCTG TCATCTCTGA TGCGGTAGGT GCACAACTTT 73666 .......... .......... .......... .......... .......... .......... 286 TCCAACAGCA GGCCAATGGG ATGACTTCAA CGAATTTGTG GGAAATTATA TTATCTCTTT 73606 .......... .......... .......... .......... .......... .......... 286 CCAACAAACA TAAATTCAAG ACTTGACAAA TTAAACTTTG ATTTTCTCTG AAAATTTAGA 73546 .......... .......... .......... .......... .......... .......... 286 AGCTTGACTA GAAGGCCATC TTCAAGGAAG AACATTGCTC AACTCAACAG AAGGACCTGA 73486 .......... .......... .......... .......... .......... .......... 286 TAGAGTAAAA AAGAATCTTT GTTGTATTTA GAGCTTTGTG TCTATGTACT TACATTGTAA 73426 .......... .......... .......... .......... .......... .......... 286 ATCTGTTCCT AATCTATAAA GGATTCAGAT ATTTGTTTTG GGTTTGTAAA AGTCTAAATC 73366 | |||| | || || || | |||||||| .......... .......... ........AG TGTTGTACCT GCTTAGTCAA ATTCTAAATC 318 AGTTAAGGTT AACTGATTTA GTGGGCAACA TTTGTTTGTT GCTTAGTCAA ATTCTAAGTC 73306 | || ||| | || |||| | | || | | | | | |||| ||| | ||||||| ATCTAGAGTT AGGTGGTTTA GCGAGC--GA TGGGGTCTCC GTTTAG-CAA AATCTAAGTT 375 ATCTAGAGTT AGGTGGTTTA GTGGGCGGTG TGGTATCCGC TTAGGCTCTT CAAGTAACAG 73246 |||||| | | | | | ||| |||||| ||| | ||||| || ||||||| || ||||||| || ATCTAGGGGT A-ATAGCTTA GTGGGCAGTG TTGTATCTGC TTAGGCTTTT CAAGTAATAG 434 GTAGATTACT TGATCGTGAG ATTAATAACT TTTTCTCACA TTGATTGTAA CCGGGTTTCA 73186 ||||| || || | | || ||||||| | |||||||| ||| |||||| | ||| |||| AGTTATTACA TGGTCATATG ATCAATAACT TCTTCTCACA TTGGTTGTAA CTGGG-TTCA 493 CTTTTGCTT- GAGAAGATTA GTGAAGACGG TTGTAAATCT TGTGCAATAG GTCGTGGTTT 73127 ||||||||| | ||||||| | ||| || | ||| ||||| ||||||| || |||||||||| CTTTTGCTTA AAAAAGATTA GAGAA-ACAG TTGAAAATCC TGTGCAACAG GTCGTGGTTT 552 TACTCCCTTG AGCAAGGAGG TTTCCACGTA AACTGCTTGT GTTGTGTTCT TCATATTGTT 73067 |||||||||| |||||||||| |||||||||| |||||||||| || || |||| || ||| TACTCCCTTG AGCAAGGAGG TTTCCACGTA AACTGCTTGT GTCGTCTTCT GTTCATCGTT 612 TAATCTT 73060 || |||| TACTCTT 619 hqPGS_C08HBa0060C12.1-_SGN-E398229+ (73397 73060) ******************************************************************************** EST sequence 358 +strand 464 n (File: SGN-E202132+) 1 TTTTGCGACT TGAAAATTCT CAAGTATACA AGCAAAGACT ACCTTGGTGA AATATTCTCC 61 AGCAAGCACA ACAAGGTCCC GAGGAGCTGC AAGCGTCAGA GTGTGTCTTA AGAGTTATAC 121 TTTCGTGGTT ATATTATAAA TTTGTTCCTA ATTTATAAAG GATTCAGATA GTTTGTTTTT 181 GGTTTGTAAA AGTATAAATC AGTTAACCCT AACTGATTTA GTGGGCAACA TTGTTTTGTT 241 GCTTAGTCAA ATTCTAAGTC ATCTAGGTGG GATGGTTTAG TGGTCAGTGT TGTACCTGCT 301 TAGTCAAATT CTAAATCATC TAGAGTTAGG TGGTTTAGCG AGCGATGGGG TCTCCGTTTA 361 GCAAAATCTA AGTTATCTAG GGGTAATAGC TTAGTGGGCA GTGTTGTATC TGCTTAGGCT 421 TTTCAAGTAA TAGAGTTATT ACATGGTCAT ATGAACAATA ACTT Predicted gene structure (within gDNA segment 76046 to 70710): Exon 1 74206 74199 ( 8 n); cDNA 103 110 ( 8 n); score: 0.750 Intron 1 74198 73455 ( 744 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 2 73454 73259 ( 196 n); cDNA 111 306 ( 196 n); score: 0.824 Intron 2 73258 72244 (1015 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0) Exon 3 72243 72231 ( 13 n); cDNA 307 319 ( 13 n); score: 0.923 MATCH C08HBa0060C12.1- SGN-E202132+ 0.824 217 0.468 C PGS_C08HBa0060C12.1-_SGN-E202132+ (74206 74199,73454 73259,72243 72231) Alignment (genomic DNA sequence = upper lines): GTGTTTTGAT GATCCTCACA AATGCGGGGA CCTGGTTCCT GGCAGAGTGC TCTCGTCCAG 74147 |||| || GTGTCTTA.. .......... .......... .......... .......... .......... 110 ATACAAATGG GGTACAGTCA TAAAAGTTGA TATGTTAGGT GGTAGGTGAA AAGTGCAGTA 74087 .......... .......... .......... .......... .......... .......... 110 TCCTACACCA ATAAGAAGAG CGGACAAGAT TGTATGTTTC AGAATCTCAC AAATGCAGGG 74027 .......... .......... .......... .......... .......... .......... 110 ACCTAGTACC AGGCAGAGTT TCCTCCATCA GATACATAAT TGGTTACAGC TGTAAAGTTG 73967 .......... .......... .......... .......... .......... .......... 110 TCACGTCAGA GGTTAGTAAG ATGTCAGTGT ACTACACCAA TCAGAATGGA GGAGGGTGTT 73907 .......... .......... .......... .......... .......... .......... 110 TGTCCAATGG ATAATAACTC TTTATATTTG ATACTTTTAG CATGACAAAC ACCATATTAT 73847 .......... .......... .......... .......... .......... .......... 110 ATTCATTTAT CCAAAGAAGG AAGTCAGCCA GCAAGCCTTT TCAAGAACTC ATATAGAAGT 73787 .......... .......... .......... .......... .......... .......... 110 TTGCAAGGGA CCTGGTTCCC AAAAGCAAGG GACCTGGTAC CCGCAAGACT GTGACGTGAA 73727 .......... .......... .......... .......... .......... .......... 110 AAGGACGAAA AGACAGCTGT CAGAAAAGCT GTCATCTCTG ATGCGGTAGG TGCACAACTT 73667 .......... .......... .......... .......... .......... .......... 110 TTCCAACAGC AGGCCAATGG GATGACTTCA ACGAATTTGT GGGAAATTAT ATTATCTCTT 73607 .......... .......... .......... .......... .......... .......... 110 TCCAACAAAC ATAAATTCAA GACTTGACAA ATTAAACTTT GATTTTCTCT GAAAATTTAG 73547 .......... .......... .......... .......... .......... .......... 110 AAGCTTGACT AGAAGGCCAT CTTCAAGGAA GAACATTGCT CAACTCAACA GAAGGACCTG 73487 .......... .......... .......... .......... .......... .......... 110 ATAGAGTAAA AAAGAATCTT TGTTGTATTT AGAGCTTTGT GTCTATGTAC TTACATTGTA 73427 || || | | || ||| ||| || .......... .......... .......... ..AGAGTTAT ACTTTCGTGG TTATATTATA 138 AATCTGTTCC TAATCTATAA AGGATTCAGA TA-TTTGTTT TGGGTTTGTA AAAGTCTAAA 73368 ||| |||||| |||| ||||| |||||||||| || ||||||| | |||||||| ||||| |||| AATTTGTTCC TAATTTATAA AGGATTCAGA TAGTTTGTTT TTGGTTTGTA AAAGTATAAA 198 TCAGTTAAGG TTAACTGATT TAGTGGGCAA CATTTGTTTG TTGCTTAGTC AAATTCTAAG 73308 |||||||| ||||||||| |||||||||| |||| |||| |||||||||| |||||||||| TCAGTTAACC CTAACTGATT TAGTGGGCAA CATTGTTTTG TTGCTTAGTC AAATTCTAAG 258 TCATCTAGAG TTAGGTGGTT TAGTGGGCGG TGTGGTATCC GCTTAGGCTC TTCAAGTAAC 73248 |||||||| | | | ||||| |||||| | | ||| ||| | |||||| | TCATCTAG-G TGGGATGGTT TAGTGGTCAG TGTTGTACCT GCTTAGTCA. .......... 306 AGGTAGATTA CTTGATCGTG AGATTAATAA CTTTTTCTCA CATTGATTGT AACCGGGTTT 73188 .......... .......... .......... .......... .......... .......... 306 CACTTTTGCT TGAGAAGATT AGTGAAGACG GTTGTAAATC TTGTGCAATA GGTCGTGGTT 73128 .......... .......... .......... .......... .......... .......... 306 TTACTCCCTT GAGCAAGGAG GTTTCCACGT AAACTGCTTG TGTTGTGTTC TTCATATTGT 73068 .......... .......... .......... .......... .......... .......... 306 TTAATCTTAC GCACTGTTCT TATTGTGTCA AGGGACCTGG TCCGTTGACT GGTAGTGGAC 73008 .......... .......... .......... .......... .......... .......... 306 ACACATATTC TAACAAATAA GATATTCTTT GGTTTTCTAT TTATCGATTT TTGGTCATTA 72948 .......... .......... .......... .......... .......... .......... 306 ACGGTTTGGT TTTCGGTTTA CCTAATAAGA AAATGCTAAT AAAATAAATA TATGATTTTC 72888 .......... .......... .......... .......... .......... .......... 306 TTACTTCTCT AACAATTTAG CGCGATACAG TGAGACTAAC AAATCAGATG TTAATGCTTT 72828 .......... .......... .......... .......... .......... .......... 306 GATATAGTGA AACAAGAAAT ATAATGAAAA ATTACATCAA TAAGAGTAGA TACAGTTGGA 72768 .......... .......... .......... .......... .......... .......... 306 GGCTACAATT ACATGTTACA ACCAAAACAT AATATGATTT TTTTTATGTG AAGTGGAAGT 72708 .......... .......... .......... .......... .......... .......... 306 AATGTGAAGT GTATAGATCG TAGTGTAGAG TACTGATATA GTGTCTAGTT CTGTTAAGTT 72648 .......... .......... .......... .......... .......... .......... 306 ATTAATATTT GATATTTATG AAGGGTATAG TAGTAAATTA TTATCGTCTT AATGGGTTAT 72588 .......... .......... .......... .......... .......... .......... 306 CAATTTATCT AATACTAAAA ATCGATACCA AATCGATAAC CTAATAATTT TTTTTTTTGA 72528 .......... .......... .......... .......... .......... .......... 306 AAAAAACTAT CTAAAACCCG CCAACCTAAT AACCCAATAG CAATAACTCA ATATATTTTT 72468 .......... .......... .......... .......... .......... .......... 306 TGTTCCGTTT ATTGATCAAT AAATATGATA CAAAGTAAAT ACACAATATC GACCATATAC 72408 .......... .......... .......... .......... .......... .......... 306 ATTAGAAATT TGACCGTTGA ATTTTCAAAA TATTTCCGCC CACAATTTCT TCATCATTAA 72348 .......... .......... .......... .......... .......... .......... 306 AGGATCTTTC TGGTGTTTGG ATCTATTTTC AGCAAAATCA TCATTATTCG AATCAAACTC 72288 .......... .......... .......... .......... .......... .......... 306 ACTAGGGAAC AAGATGTTCC ATTGAAGAAC TAATTGAGTA AGACAATTCT AAATGAT 72231 |||||| |||| || .......... .......... .......... .......... ....AATTCT AAATCAT 319 hqPGS_C08HBa0060C12.1-_SGN-E202132+ (73454 73259) ******************************************************************************** EST sequence 222 +strand 805 n (File: SGN-E544532+) 1 AACTTAATAT GTTTTTTGTC ATGTTAAAAT TATCGACCAT AAAGAGTTAT AAGCATTGGA 61 CAAAAAACCT CTTCCATTCT GATTAGTTCA GTACGCTGGC GCCTCACCTA CCACTGACAG 121 GACAACTTTA TAATTGTACA CCATTATGTA TCAGATGGAG AGAACTCAGC CAGGGACTAG 181 GTCCCTGCAT TTGTGAGATA TTGAAACATA CAATCTCGTC CGCTCTTCTT ATTGCTGTAG 241 GACGCTGCAC TTTTCACCTA CCACCGAACA TGATAAATTT ATGGTTGTAC CCCATTTGTA 301 TCTAGATAAC AGCACTCTGA TAGGGACCAG GTCCCCTTAT TCTCTTATTT GTGAGGATCA 361 TCAAAATGCC TATAATATAA CATTTCCCCC TTTTTGATTA TAGTACACAA AATATACCTC 421 ACACTGAGTT TATCATTCAT CTCAGTGTCA TCAGTTCCAA CAACAAAAAT ATGGTTTCTT 481 ATTAGATCAA TAAGTTTGTT AAGTCATCAA AACTTCATAT CGAGTTCGAT CTAACATCTT 541 CAACTCAGCT TCGAACTAAC ATTTTCCCCC TTTTTGATGA TAACATACTT ATTCACCAGC 601 TCCCCTTGTC AACAAGAATT CTTGGGGTAG CTGGAGTTGA ATCATCCCCA AACTTTGTCA 661 AATCATGAAA ACATCAACAT AGAATTTCCC CCTGTTTGAT GATGACATGC TTATTCACTA 721 CTTCCCTTAT CAACAAGGAT TCTTGGGGTA ACTAGAGTTG AATCATCCCC AAAGTTCTCA 781 ACTCATCAAA ACACAACATA GCATT Predicted gene structure (within gDNA segment 71670 to 80119): Exon 1 73844 74187 ( 344 n); cDNA 1 341 ( 341 n); score: 0.814 Intron 1 74188 75405 (1218 n); Pd: 0.972 (s: 0.80), Pa: 0.995 (s: 0) Exon 2 75406 75415 ( 10 n); cDNA 342 351 ( 10 n); score: 0.700 Intron 2 75416 75918 ( 503 n); Pd: 0.000 (s: 0), Pa: 0.931 (s: 0) Exon 3 75919 75924 ( 6 n); cDNA 352 356 ( 5 n); score: 0.833 Intron 3 75925 78261 (2337 n); Pd: 0.000 (s: 0), Pa: 0.864 (s: 0.54) Exon 4 78262 78320 ( 59 n); cDNA 357 416 ( 60 n); score: 0.534 Intron 4 78321 79162 ( 842 n); Pd: 0.853 (s: 0.58), Pa: 0.946 (s: 0) Exon 5 79163 79178 ( 16 n); cDNA 417 431 ( 15 n); score: 0.625 MATCH C08HBa0060C12.1+ SGN-E544532+ 0.773 435 0.540 C PGS_C08HBa0060C12.1+_SGN-E544532+ (73844 74187,75406 75415,75919 75924,78262 78320,79163 79178) Alignment (genomic DNA sequence = upper lines): AATATAATAT GGTGTTTGTC ATGCTAAAAG TATCAAATAT AAAGAGTTAT TATCCATTGG 73903 || |||||| | | |||||| ||| ||||| |||| | || ||||||||| || |||||| AACTTAATAT GTTTTTTGTC ATGTTAAAAT TATCGACCAT AAAGAGTTA- TAAGCATTGG 59 ACAAACACCC TCCTCCATTC TGATTGGTGT AGTACACTGA CATCTTACTA ACCTCTGACG 73963 ||||| | || || ||||||| ||||| || ||||| ||| | || || ||| ||||| ACAAAAAACC TCTTCCATTC TGATTAGTTC AGTACGCTGG CGCCTCACCT ACCACTGACA 119 TGACAACTTT ACAGCTGTAA CCAATTATGT ATCTGATGGA GGAAACTCTG CCTGGTACTA 74023 ||||||||| | | |||| | ||||||| ||| |||||| | ||||| | || || |||| GGACAACTTT ATAATTGTAC ACCATTATGT ATCAGATGGA GAGAACTCAG CCAGGGACTA 179 GGTCCCTGCA TTTGTGAGAT TCTGAAACAT ACAATCTTGT CCGCTCTTCT TATTGGTGTA 74083 |||||||||| |||||||||| |||||||| ||||||| || |||||||||| ||||| |||| GGTCCCTGCA TTTGTGAGAT ATTGAAACAT ACAATCTCGT CCGCTCTTCT TATTGCTGTA 239 GGATACTGCA CTTTTCACCT ACCACCTAAC ATATCAACTT TTATGACTGT ACCCCATTTG 74143 ||| ||||| |||||||||| |||||| ||| || || | ||||| ||| |||||||||| GGACGCTGCA CTTTTCACCT ACCACCGAAC ATGATAA-AT TTATGGTTGT ACCCCATTTG 298 TATCTGGACG AGAGCACTCT GCCAGGAACC AGGTCCCCGC ATTTGTGAGG ATCATCAAAA 74203 ||||| || | |||||||| | ||| ||| |||||||| | || TATCTAGATA ACAGCACTCT GATAGGGACC AGGTCCCCTT A-TT...... .......... 341 CACCTAGAAT ATAACATTAT TGATATGTTA TTGGTTCAAC ATATTTAAAA ACAAAACACT 74263 .......... .......... .......... .......... .......... .......... 341 GATAAATCGA ACCAATAATA CACGAAATCG AACTGAACTA ACTAATGCAC ACCCGTATAT 74323 .......... .......... .......... .......... .......... .......... 341 CAGATACATT ATAATTTTAT TTGTGTACAA TGTATACAGT ACAAATGTTA TGATTGATAT 74383 .......... .......... .......... .......... .......... .......... 341 GTATAACCCC AATTATTTCA AACCGAAATT AGTATAAATC ATGTTTATAG TTATGTATCT 74443 .......... .......... .......... .......... .......... .......... 341 GGTACATAAC CATGACAACT TTCATTATAT TTTAATACCC GATTCATACA CCTATTGCTA 74503 .......... .......... .......... .......... .......... .......... 341 TTTATCTGAA AAAGGCTACC AACTTTCATT GTGATTCTAG TTATTTTGTT ATGTATATGA 74563 .......... .......... .......... .......... .......... .......... 341 ATTCTTTACA TTTTAATGTA TCTGGAGACA GTTTTACGAT GTATCTATCT GATGTCTATT 74623 .......... .......... .......... .......... .......... .......... 341 TTTTTTTCCA ACTCATCAAT TTATAATTCA GCTTCGATTT CAGATTCATA AAAGAAATAT 74683 .......... .......... .......... .......... .......... .......... 341 TGTTTCCAAC AACGATTTTA TCGCTTTTTT ATTGTTCGTA ATTTACTTTA AACATCATAC 74743 .......... .......... .......... .......... .......... .......... 341 TCCAAAATGT CTTAATGTTC ATGATGTATC TTCTTCCAAA TTACCAAATT TTGAAGCAGA 74803 .......... .......... .......... .......... .......... .......... 341 GTTAAGGATT TTGAAAGATT TGCTTGAACT AGTTTGAATT TTAAATATGT TACGCATTAC 74863 .......... .......... .......... .......... .......... .......... 341 CAGGAATCTA AGTTCTACAA TTGACTCAAT TAGAATAATA ATTAATTTTA ATCCGTTAAT 74923 .......... .......... .......... .......... .......... .......... 341 TTTGAATATT AAGATCAGAG CTTTTATCAC TTTTCTTGAA ATTATGTTTT ATTGGTGTTA 74983 .......... .......... .......... .......... .......... .......... 341 AATATTTAGT TTTTCTTCTT AAAGAAGATG AACGGTATCT GATTGGGTAT TTGAGGCCAT 75043 .......... .......... .......... .......... .......... .......... 341 GACTGTCAAA AACTTCAAAT TTTGCTGGCG ATAAATCCAA AGAAAGAAAC GATTTTTCGC 75103 .......... .......... .......... .......... .......... .......... 341 TGAAAATTGA ATGATAAACA AAATGCCAAA CAAATTTTGC TTTTCACGTT TCTTGTAATA 75163 .......... .......... .......... .......... .......... .......... 341 CCAACAAAGT TACTTTTTCC GTTTCAATTA ACATCACGAG ACTCAGGAGG TGACTCTGCT 75223 .......... .......... .......... .......... .......... .......... 341 TCATTTTGGT CTATTTATAT TCATCTCATT CTTTCAGCAA AATCAAAATC TTTTGGAGGT 75283 .......... .......... .......... .......... .......... .......... 341 GCAAAAGCTT CAGATGTCTC TCAAATTCTT CAAACCCCTT TTTGATTCTT CCCCATGGCT 75343 .......... .......... .......... .......... .......... .......... 341 CCTTCAACAA CTCAATGTTG AGGAAAATGC TGTGTTTTTC TCCTGTTTTC TTGGTTTTTC 75403 .......... .......... .......... .......... .......... .......... 341 AGCTTTACTT TGGTATTTCA TCAGAAACTC AAACAAGGGA TTGCCACCAG GGCCTAAACC 75463 || | || || ..CTCTTATT TG........ .......... .......... .......... .......... 351 TTTGCCCTTG ATAGGTAATC TTCATTCTCT TGAACCTCAA CTTCATACCT ATTTTACATC 75523 .......... .......... .......... .......... .......... .......... 351 TCTTTCCCAA ACTTATGGTC CTATTTGTAG ACTCTGGCTT GGTAAAAAAG TTGGGATTGT 75583 .......... .......... .......... .......... .......... .......... 351 TATTGCTTCG CCTGCTTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 75643 .......... .......... .......... .......... .......... .......... 351 CAGAGATGTC CCTGCTGCTG GAAGAGAATT TTCCTACGGT GTGAATGACT TACTTTGGAC 75703 .......... .......... .......... .......... .......... .......... 351 TCCTTATGGA CCGAAATGGC GAATGTTGAG GAAGGTTTGT GTTCGTGATA TGCTTAGTTG 75763 .......... .......... .......... .......... .......... .......... 351 TTCTACATTA GATTCTGTTT ATGCACTAAG GAAAAGGGAG CTTAGACAAT CGATCAAATA 75823 .......... .......... .......... .......... .......... .......... 351 CTTGTATAGT CAGAAGGGTT TACCGGTGAA TGTTGGTGAA CAGATGTTCT TGACTGTGCT 75883 .......... .......... .......... .......... .......... .......... 351 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTAGTGT 75943 || || | .......... .......... .......... .....TG-AG G......... .......... 356 TGGAGCGGAG TTTAGGCATG TTGTGACTGA GATAGCTCAG TTGATCAGTA TTCCCAATCT 76003 .......... .......... .......... .......... .......... .......... 356 TTCCGATTTT TACCCAGGCA TGGCTTGGTT TGATTTCCAG GGTGTTGTAA AGAAGATGAA 76063 .......... .......... .......... .......... .......... .......... 356 GGTGGTTCTT AAGAGATTCG ATAAGATATT TGAAAGCATG ATTGATCAAA GACAAAAATT 76123 .......... .......... .......... .......... .......... .......... 356 GGACAGAAAC GGTTTTGGCC AAGAAAGCAA AGACTTTCTG CAAGTTTTGC TGAAGTTGAA 76183 .......... .......... .......... .......... .......... .......... 356 AGATGAAGCA GATGCCAAAA TGCCACTGAC TATGACTGAA ATCAAAGCCT TACTTATGGT 76243 .......... .......... .......... .......... .......... .......... 356 ATGTTTATCA TTTGTGCATT CTATTAAATT TGTTTTATCC ATACGAACCA AAAAGAAATC 76303 .......... .......... .......... .......... .......... .......... 356 TTCCTCTCCC CAGTTATCAC TGCATTATTA TTGAGTAGCC AAGATGCAAC CATTCATACC 76363 .......... .......... .......... .......... .......... .......... 356 TTATCTATAT GGATTATTTA TTAGCTTACA CAGTTACACT AATCATGATG GCAGATCTGT 76423 .......... .......... .......... .......... .......... .......... 356 TTTTTTTAAT ATTAAAAAGG ATCAAAATTC ATTGTGTCAT ATGGGAAATA AATTTCAGAA 76483 .......... .......... .......... .......... .......... .......... 356 GAATCAGATT AATAAATTTA TGTCCTGAGC TGTTGGTTGC GTTCTTCTGC TAGGAAAATT 76543 .......... .......... .......... .......... .......... .......... 356 CACTTTCATT ACATGTTGTG CTGGTTACAA AAGTTTGCAT TTTACTGTCA ATTAAAACTG 76603 .......... .......... .......... .......... .......... .......... 356 TGAACCTGAA ATCAAATATA TAATTATACA ATTAAAAATC TGCTGTACAT GATAATGACT 76663 .......... .......... .......... .......... .......... .......... 356 GTGGACAGGA TATGGTTACC GGTGGAGCTA GCTCAACGTC CAACGCGATA GAGTTTGCCA 76723 .......... .......... .......... .......... .......... .......... 356 TGGCTGAAAT TATGAACAGA CCAGACGTCT TGAGGAAATT ACAAGAAGAA GTAGAAGCAG 76783 .......... .......... .......... .......... .......... .......... 356 TTGTGGGAAA AGATAATATT GTGGAAGAGT CTCATCTTAA GCAATTACCA TATCTCTATG 76843 .......... .......... .......... .......... .......... .......... 356 CAGTGATGAA AGAAGCCTTG CGCATACATC CAACTGCTCC ACTATTGGTG CCTCATTGTC 76903 .......... .......... .......... .......... .......... .......... 356 CAAGTGAAAC ATGCACTGTG GGAGGATACA CTATTCCTAA AGGATCTTGT GTTTTCATAA 76963 .......... .......... .......... .......... .......... .......... 356 ATGTATGGGC TATACACAGA GATCCTTCTA TCTGGAAAAA TCCAACTGAG TTCCGTCCAG 77023 .......... .......... .......... .......... .......... .......... 356 AGAGATTTTT GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTCCCGTTTG 77083 .......... .......... .......... .......... .......... .......... 356 GTTCTGGCAG AAGAATCTGT GTGGGGCTAG ACATGGCAGA GAGGATGTTC ATGTATTCAC 77143 .......... .......... .......... .......... .......... .......... 356 TGGCTTCACT CATTCATTCT TTCGACTGGA AATTGCCTGA AGGAGAGACA TTAGAAGTTA 77203 .......... .......... .......... .......... .......... .......... 356 CAGAGAAGTT TGGTATTATT ATGAAGAAGA AAATGCCTCT GGTGGCTATA CCGACTCCAA 77263 .......... .......... .......... .......... .......... .......... 356 GATTGTCCAA TCCATCACTC TATGAGTAAG ATAAAAATGT GTCTGTAGAG AGTCGCATTT 77323 .......... .......... .......... .......... .......... .......... 356 TGTATGATTA TTATTATTAT TATTATTTTA TAAATAGAGC ATTCTTGCTC AGTGTATGAT 77383 .......... .......... .......... .......... .......... .......... 356 AATAATGTCT TTTGTATGAT GAACTATGAA AATGGGATCC ATTTTAAATT GATTCAAAGG 77443 .......... .......... .......... .......... .......... .......... 356 TTTCTATACA GTTTGTGCCC TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAAGGTTTG 77503 .......... .......... .......... .......... .......... .......... 356 CCCTTGATAG GTAATCTCCA TTGTCTTCAA CCTGAACTTC ATATCTATTT TGCATTTTTG 77563 .......... .......... .......... .......... .......... .......... 356 AACAAGAAAT TTTAATGATA CCAATATAAT CAATTGAGCG AAATTATCAG TCTTAATGAT 77623 .......... .......... .......... .......... .......... .......... 356 AACAATACAA TATATGTTAC TGATTAGTAT CCGTTAAGCG AAATTATCAC CCTTATGATA 77683 .......... .......... .......... .......... .......... .......... 356 CCAATACATT ATATTATATA AATTTAGTAT AAGCGAAATT AGTTGGGGTA TATAGTGTAA 77743 .......... .......... .......... .......... .......... .......... 356 TTATTTAGTG AATATAAATA TAAATGGGTA TATGTTTGTA ATTATTTTAC TTTTATGGAA 77803 .......... .......... .......... .......... .......... .......... 356 TATTTGCTTA GTTTTCCGTT TATTCGTTCC TTTTTATCTT TTCCAGATTT ATGTACTCTT 77863 .......... .......... .......... .......... .......... .......... 356 TTGATTCTTA ATTATAAAAT GACGCTTGGG TTTTATTCAT TAAAAGAAGG AGCTACATAT 77923 .......... .......... .......... .......... .......... .......... 356 TTCTTCCTAA TAAAAAGAAT ATATCTTTAA TTATAAAATT GACTAAAAAT GAAAATAATT 77983 .......... .......... .......... .......... .......... .......... 356 AGCTATTGCA CAAATTCAAT ATCCAAATAG AGATACTAAA ATACCACATG CTAGGCTAGT 78043 .......... .......... .......... .......... .......... .......... 356 GTATACAAAA CAAAAAACCA TGGTAAATTA TAAATAATAA TAACACAACA ATAGAAAATT 78103 .......... .......... .......... .......... .......... .......... 356 GTACAATAAC AACAAGCAAG AAATATAAAT GTTAAACCAA ACAAATAAAA AGAGATAAGA 78163 .......... .......... .......... .......... .......... .......... 356 GAAGAGATCA CAAAGATTTT CACATATATA TTTTTCAATA ATTGGTTTAA GTGTACATTA 78223 .......... .......... .......... .......... .......... .......... 356 TTGTGTCAAA TGTTCCTATT TATAGGATAA CATTGCAGAA CA-CGAGTTG TCATGAATAT 78282 | || | | || | ||||| .......... .......... .......... ........AT CATCAAAATG CCTATAATAT 378 GATATTAATC CATTTGAGAT TATGGACGAG AGATGAGAGT AAAAATCACA ATGTATATAA 78342 | ||| | | ||| ||| ||| | | | | | | AACATTTCCC CCTTTTTGAT TATAGTACAC AAAATATA.. .......... .......... 416 TTAGTGGGAG ATACATACGT ATATTTACAT AATGAAGAGT TGGTGGTAAT AAAAATTATG 78402 .......... .......... .......... .......... .......... .......... 416 TATACTAATA TGATGATTTT CTTTTAACTA TTTGCTATTT AATTTATTAA ACAATTTATA 78462 .......... .......... .......... .......... .......... .......... 416 ACATTTAAAT GTAATGTAGA AGTAAAATTG TAATCTAAAG GATAAAATAT GTAAAACAAT 78522 .......... .......... .......... .......... .......... .......... 416 TCAAATATAT TAAATGTGTA ATGAAATTCA TTATGACTAA TAATTAGAAA ATTCATGGTA 78582 .......... .......... .......... .......... .......... .......... 416 ATTATAATTA TGAAAAATCA TCATTATTAC TATGTGGAAG ATGTAAAGGT TGTTGATTTT 78642 .......... .......... .......... .......... .......... .......... 416 TTCTTGCTAA TAATAATTTA CAATTTAATA ATGAGTATTG AATTGTAAGT CTGGCTAAAA 78702 .......... .......... .......... .......... .......... .......... 416 ATAAGAGTAT TAATTAACAT AATACGAACC CGTTAAAAAT TCATTGAATA TCAAAATAAA 78762 .......... .......... .......... .......... .......... .......... 416 TATCAAATGA AAAAATAATA TTTTAAATAA TTTCAGGAAA AAATAAATTA ATAGTTAAAA 78822 .......... .......... .......... .......... .......... .......... 416 AATATTTGTG TAATTCAACT TTTGACTTAT AGTACATGTA AGATGTAAAG ATTGTTAGTG 78882 .......... .......... .......... .......... .......... .......... 416 TTTTCTTGCT AATAATAAGT GTTGTTGCAT CGTAAGTCTA GCTGGAAGTA GAAGTACAAA 78942 .......... .......... .......... .......... .......... .......... 416 AGTAAAGAAT GGTCAAAATT CATTAAATTA AAAAAAGGTC TGTTTATATT CATCTCATTC 79002 .......... .......... .......... .......... .......... .......... 416 TTTCTGCAAA GTCAAAACAA AGTAAAAATT TTAGGGGTGC AAAAGCTTCA GATGTCTCTC 79062 .......... .......... .......... .......... .......... .......... 416 AAATTCTTCA AACCCCTTTT TGATTCTTTT CCATGGCCCC TTCAAGAACT CAATGTTGAG 79122 .......... .......... .......... .......... .......... .......... 416 CAAAATGGTG TGTTTTTCTC CTGTTTTCTT GGGTTCTTAG CTTTACTTTG GTGTTT 79178 | | || | | |||| .......... .......... .......... .......... CCTCACACT- GAGTTT 431 hqPGS_C08HBa0060C12.1+_SGN-E544532+ (73844 74187) ******************************************************************************** EST sequence 121 +strand 559 n (File: SGN-E307594+) 1 ACTTAATATG TGGTTTGTCA TGTCAAAATT ATCGACCATG AAGAGTTATG GGCATTGGAC 61 AAAAAACCTC TTCCATTCTG ATTAGTTCAA TACGCTGGCG CCTCACCTAC CACTGACAGG 121 ACAACTTTAT AATTGTACAC CATGATGTAT CATATGGAGA GAACACAGCC AGGGACTAGG 181 TCCCTGCATT TGTGAGATAT TGAAACATAC AATCTCGTCC GCTCTTCTTA TTGCTGTAGG 241 ACGCTGCACT TTTCACCTAC CACCGAACAT GATAAATTTA TGGTTGTACC CCATTTGTAT 301 CTAGATAACA GCACTCTGAT AGGGACCAGG TGCCCTTATT CTCTTATTTG TGAGGATCAT 361 CAAAATGCCT ATAATATAAC ATTTCCCCCT TTTTGATTAT AGTACACAAA ATATACCTCA 421 CACTGAGTTT ATCATTCATC TCAGTGTCAT CAGTTCCAAC AACAAAAATA TGGTTTCTTA 481 TTAGATCAAT AAGTTTGTTA AGTCATCAAA ACTTCATATC GAGTTCGATC TAACATCTTC 541 AACTCAGCTT CGAACTAAC Predicted gene structure (within gDNA segment 71680 to 77669): Exon 1 73848 74187 ( 340 n); cDNA 4 341 ( 338 n); score: 0.794 Intron 1 74188 75405 (1218 n); Pd: 0.972 (s: 0.78), Pa: 0.995 (s: 0) Exon 2 75406 75429 ( 24 n); cDNA 342 365 ( 24 n); score: 0.583 MATCH C08HBa0060C12.1+ SGN-E307594+ 0.794 364 0.651 C PGS_C08HBa0060C12.1+_SGN-E307594+ (73848 74187,75406 75429) Alignment (genomic DNA sequence = upper lines): TAATATGGTG TTTGTCATGC TAAAAGTATC AAATATAAAG AGTTATTATC CATTGGACAA 73907 ||||||| | ||||||||| |||| |||| | || ||| ||||| | |||||||||| TAATATGTGG TTTGTCATGT CAAAATTATC GACCATGAAG AGTTA-TGGG CATTGGACAA 62 ACACCCTCCT CCATTCTGAT TGGTGTAGTA CACTGACATC TTACTAACCT CTGACGTGAC 73967 | | |||| | |||||||||| | || | || | ||| | | | || ||| ||||| ||| AAAACCTCTT CCATTCTGAT TAGTTCAATA CGCTGGCGCC TCACCTACCA CTGACAGGAC 122 AACTTTACAG CTGTAACCAA TTATGTATCT GATGGAGGAA ACTCTGCCTG GTACTAGGTC 74027 ||||||| | |||| | | | ||||||| |||||| | || | ||| | | |||||||| AACTTTATAA TTGTACACCA TGATGTATCA TATGGAGAGA ACACAGCCAG GGACTAGGTC 182 CCTGCATTTG TGAGATTCTG AAACATACAA TCTTGTCCGC TCTTCTTATT GGTGTAGGAT 74087 |||||||||| |||||| || |||||||||| ||| |||||| |||||||||| | ||||||| CCTGCATTTG TGAGATATTG AAACATACAA TCTCGTCCGC TCTTCTTATT GCTGTAGGAC 242 ACTGCACTTT TCACCTACCA CCTAACATAT CAACTTTTAT GACTGTACCC CATTTGTATC 74147 ||||||||| |||||||||| || ||||| || ||||| | ||||||| |||||||||| GCTGCACTTT TCACCTACCA CCGAACATGA TAA-ATTTAT GGTTGTACCC CATTTGTATC 301 TGGACGAGAG CACTCTGCCA GGAACCAGGT CCCCGCATTT GTGAGGATCA TCAAAACACC 74207 | || | || ||||||| | || ||||||| ||| ||| TAGATAACAG CACTCTGATA GGGACCAGGT GCCCTTATTC .......... .......... 341 TAGAATATAA CATTATTGAT ATGTTATTGG TTCAACATAT TTAAAAACAA AACACTGATA 74267 .......... .......... .......... .......... .......... .......... 341 AATCGAACCA ATAATACACG AAATCGAACT GAACTAACTA ATGCACACCC GTATATCAGA 74327 .......... .......... .......... .......... .......... .......... 341 TACATTATAA TTTTATTTGT GTACAATGTA TACAGTACAA ATGTTATGAT TGATATGTAT 74387 .......... .......... .......... .......... .......... .......... 341 AACCCCAATT ATTTCAAACC GAAATTAGTA TAAATCATGT TTATAGTTAT GTATCTGGTA 74447 .......... .......... .......... .......... .......... .......... 341 CATAACCATG ACAACTTTCA TTATATTTTA ATACCCGATT CATACACCTA TTGCTATTTA 74507 .......... .......... .......... .......... .......... .......... 341 TCTGAAAAAG GCTACCAACT TTCATTGTGA TTCTAGTTAT TTTGTTATGT ATATGAATTC 74567 .......... .......... .......... .......... .......... .......... 341 TTTACATTTT AATGTATCTG GAGACAGTTT TACGATGTAT CTATCTGATG TCTATTTTTT 74627 .......... .......... .......... .......... .......... .......... 341 TTTCCAACTC ATCAATTTAT AATTCAGCTT CGATTTCAGA TTCATAAAAG AAATATTGTT 74687 .......... .......... .......... .......... .......... .......... 341 TCCAACAACG ATTTTATCGC TTTTTTATTG TTCGTAATTT ACTTTAAACA TCATACTCCA 74747 .......... .......... .......... .......... .......... .......... 341 AAATGTCTTA ATGTTCATGA TGTATCTTCT TCCAAATTAC CAAATTTTGA AGCAGAGTTA 74807 .......... .......... .......... .......... .......... .......... 341 AGGATTTTGA AAGATTTGCT TGAACTAGTT TGAATTTTAA ATATGTTACG CATTACCAGG 74867 .......... .......... .......... .......... .......... .......... 341 AATCTAAGTT CTACAATTGA CTCAATTAGA ATAATAATTA ATTTTAATCC GTTAATTTTG 74927 .......... .......... .......... .......... .......... .......... 341 AATATTAAGA TCAGAGCTTT TATCACTTTT CTTGAAATTA TGTTTTATTG GTGTTAAATA 74987 .......... .......... .......... .......... .......... .......... 341 TTTAGTTTTT CTTCTTAAAG AAGATGAACG GTATCTGATT GGGTATTTGA GGCCATGACT 75047 .......... .......... .......... .......... .......... .......... 341 GTCAAAAACT TCAAATTTTG CTGGCGATAA ATCCAAAGAA AGAAACGATT TTTCGCTGAA 75107 .......... .......... .......... .......... .......... .......... 341 AATTGAATGA TAAACAAAAT GCCAAACAAA TTTTGCTTTT CACGTTTCTT GTAATACCAA 75167 .......... .......... .......... .......... .......... .......... 341 CAAAGTTACT TTTTCCGTTT CAATTAACAT CACGAGACTC AGGAGGTGAC TCTGCTTCAT 75227 .......... .......... .......... .......... .......... .......... 341 TTTGGTCTAT TTATATTCAT CTCATTCTTT CAGCAAAATC AAAATCTTTT GGAGGTGCAA 75287 .......... .......... .......... .......... .......... .......... 341 AAGCTTCAGA TGTCTCTCAA ATTCTTCAAA CCCCTTTTTG ATTCTTCCCC ATGGCTCCTT 75347 .......... .......... .......... .......... .......... .......... 341 CAACAACTCA ATGTTGAGGA AAATGCTGTG TTTTTCTCCT GTTTTCTTGG TTTTTCAGCT 75407 .......... .......... .......... .......... .......... ........TC 343 TTACTTTGGT ATTTCATCAG AA 75429 ||| || | |||||| || TTATTTGTGA GGATCATCAA AA 365 hqPGS_C08HBa0060C12.1+_SGN-E307594+ (73848 74187) ******************************************************************************** EST sequence 39 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 75072 to 78450): Exon 1 75807 76241 ( 435 n); cDNA 1 435 ( 435 n); score: 0.931 Intron 1 76242 76671 ( 430 n); Pd: 0.999 (s: 0.96), Pa: 0.993 (s: 0.80) Exon 2 76672 76958 ( 287 n); cDNA 436 722 ( 287 n); score: 0.847 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.898 722 1.000 C PGS_C08HBa0060C12.1+_SGN-E378935+ (75807 76241,76672 76958) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAAATACTT GTATAGTCAG AAGGGTTTAC CGGTGAATGT TGGTGAACAG 75866 |||| ||| | |||| ||||| |||||||||| | |||||||| | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGCTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 75926 |||||||||| |||||||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGTGTTGG AGCGGAGTTT AGGCATGTTG TGACTGAGAT AGCTCAGTTG 75986 |||||||||| ||| | |||| ||| |||||| |||||||||| |||||||||| |||| ||||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 ATCAGTATTC CCAATCTTTC CGATTTTTAC CCAGGCATGG CTTGGTTTGA TTTCCAGGGT 76046 |||||||||| |||||||||| ||||||||| || ||| ||| | |||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTGTAAAGA AGATGAAGGT GGTTCTTAAG AGATTCGATA AGATATTTGA AAGCATGATT 76106 ||| |||||| |||| ||||| | | || ||| ||||| |||| |||||||||| |||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGGA CAGAAACGGT TTTGGCCAAG AAAGCAAAGA CTTTCTGCAA 76166 |||||||||| ||||||| || |||||| ||| ||||||||| |||||||||| |||| ||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CACTGACTAT GACTGAAATC 76226 |||||||| | |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCATTT GTGCATTCTA TTAAATTTGT TTTATCCATA 76286 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 CGAACCAAAA AGAAATCTTC CTCTCCCCAG TTATCACTGC ATTATTATTG AGTAGCCAAG 76346 .......... .......... .......... .......... .......... .......... 435 ATGCAACCAT TCATACCTTA TCTATATGGA TTATTTATTA GCTTACACAG TTACACTAAT 76406 .......... .......... .......... .......... .......... .......... 435 CATGATGGCA GATCTGTTTT TTTTAATATT AAAAAGGATC AAAATTCATT GTGTCATATG 76466 .......... .......... .......... .......... .......... .......... 435 GGAAATAAAT TTCAGAAGAA TCAGATTAAT AAATTTATGT CCTGAGCTGT TGGTTGCGTT 76526 .......... .......... .......... .......... .......... .......... 435 CTTCTGCTAG GAAAATTCAC TTTCATTACA TGTTGTGCTG GTTACAAAAG TTTGCATTTT 76586 .......... .......... .......... .......... .......... .......... 435 ACTGTCAATT AAAACTGTGA ACCTGAAATC AAATATATAA TTATACAATT AAAAATCTGC 76646 .......... .......... .......... .......... .......... .......... 435 TGTACATGAT AATGACTGTG GACAGGATAT GGTTACCGGT GGAGCTAGCT CAACGTCCAA 76706 ||| | |||| |||| ||| || | |||| ||||| .......... .......... .....GATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA 470 CGCGATAGAG TTTGCCATGG CTGAAATTAT GAACAGACCA GACGTCTTGA GGAAATTACA 76766 |||| | ||| |||||||||| |||||||| | ||||| |||| || || ||| | ||| |||| CGCGGTTGAG TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA 530 AGAAGAAGTA GAAGCAGTTG TGGGAAAAGA TAATATTGTG GAAGAGTCTC ATCTTAAGCA 76826 | |||||||| || |||||| |||||||||| ||| || ||| |||||||||| || || | || ACAAGAAGTA GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA 590 ATTACCATAT CTCTATGCAG TGATGAAAGA AGCCTTGCGC ATACATCCAA CTGCTCCACT 76886 ||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| | ||||| GTTACCATAT CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT 650 ATTGGTGCCT CATTGTCCAA GTGAAACATG CACTGTGGGA GGATACACTA TTCCTAAAGG 76946 |||| ||| |||||||| | |||| ||| |||||| || ||||||||| |||||||||| CTTGGCTCCT CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG 710 ATCTTGTGTT TT 76958 ||| ||||| || GTCTCGTGTT TT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (75807 76241,76672 76958) ******************************************************************************** EST sequence 183 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 75072 to 77872): Exon 1 75807 76241 ( 435 n); cDNA 1 435 ( 435 n); score: 0.931 Intron 1 76242 76671 ( 430 n); Pd: 0.999 (s: 0.96), Pa: 0.993 (s: 0.80) Exon 2 76672 76774 ( 103 n); cDNA 436 538 ( 103 n); score: 0.825 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.911 538 1.000 C PGS_C08HBa0060C12.1+_SGN-E206806+ (75807 76241,76672 76774) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAAATACTT GTATAGTCAG AAGGGTTTAC CGGTGAATGT TGGTGAACAG 75866 |||| ||| | |||| ||||| |||||||||| | |||||||| | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGCTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 75926 |||||||||| |||||||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGTGTTGG AGCGGAGTTT AGGCATGTTG TGACTGAGAT AGCTCAGTTG 75986 |||||||||| ||| | |||| ||| |||||| |||||||||| |||||||||| |||| ||||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 ATCAGTATTC CCAATCTTTC CGATTTTTAC CCAGGCATGG CTTGGTTTGA TTTCCAGGGT 76046 |||||||||| |||||||||| ||||||||| || ||| ||| | |||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTGTAAAGA AGATGAAGGT GGTTCTTAAG AGATTCGATA AGATATTTGA AAGCATGATT 76106 ||| |||||| |||| ||||| | | || ||| ||||| |||| |||||||||| |||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGGA CAGAAACGGT TTTGGCCAAG AAAGCAAAGA CTTTCTGCAA 76166 |||||||||| ||||||| || |||||| ||| ||||||||| |||||||||| |||| ||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CACTGACTAT GACTGAAATC 76226 |||||||| | |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCATTT GTGCATTCTA TTAAATTTGT TTTATCCATA 76286 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 CGAACCAAAA AGAAATCTTC CTCTCCCCAG TTATCACTGC ATTATTATTG AGTAGCCAAG 76346 .......... .......... .......... .......... .......... .......... 435 ATGCAACCAT TCATACCTTA TCTATATGGA TTATTTATTA GCTTACACAG TTACACTAAT 76406 .......... .......... .......... .......... .......... .......... 435 CATGATGGCA GATCTGTTTT TTTTAATATT AAAAAGGATC AAAATTCATT GTGTCATATG 76466 .......... .......... .......... .......... .......... .......... 435 GGAAATAAAT TTCAGAAGAA TCAGATTAAT AAATTTATGT CCTGAGCTGT TGGTTGCGTT 76526 .......... .......... .......... .......... .......... .......... 435 CTTCTGCTAG GAAAATTCAC TTTCATTACA TGTTGTGCTG GTTACAAAAG TTTGCATTTT 76586 .......... .......... .......... .......... .......... .......... 435 ACTGTCAATT AAAACTGTGA ACCTGAAATC AAATATATAA TTATACAATT AAAAATCTGC 76646 .......... .......... .......... .......... .......... .......... 435 TGTACATGAT AATGACTGTG GACAGGATAT GGTTACCGGT GGAGCTAGCT CAACGTCCAA 76706 ||| | |||| |||| ||| || | |||| ||||| .......... .......... .....GATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA 470 CGCGATAGAG TTTGCCATGG CTGAAATTAT GAACAGACCA GACGTCTTGA GGAAATTACA 76766 |||| | ||| |||||||||| |||||||| | ||||| |||| || || ||| | ||| |||| CGCGGTTGAG TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA 530 AGAAGAAG 76774 | |||||| ACAAGAAG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (75807 76241,76672 76774) ******************************************************************************** EST sequence 153 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 75139 to 77936): Exon 1 75840 76241 ( 402 n); cDNA 3 404 ( 402 n); score: 0.863 Intron 1 76242 76671 ( 430 n); Pd: 0.999 (s: 0.90), Pa: 0.993 (s: 0.68) Exon 2 76672 76739 ( 68 n); cDNA 405 472 ( 68 n); score: 0.750 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.847 470 0.996 C PGS_C08HBa0060C12.1+_SGN-E205363+ (75840 76241,76672 76739) Alignment (genomic DNA sequence = upper lines): GGTTTACCGG TGAATGTTGG TGAACAGATG TTCTTGACTG TGCTTAATGT GATTACAAGC 75899 || | || | |||||||||| |||||||||| || ||||||| |||||||| |||||||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA GTGTTGGAGC GGAGTTTAGG 75959 |||||||||| |||||||||| |||||||||| |||||||||| | |||| || ||| ||||| ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 CATGTTGTGA CTGAGATAGC TCAGTTGATC AGTATTCCCA ATCTTTCCGA TTTTTACCCA 76019 ||||||||| || |||| | || || | || ||| | |||||||||| ||||||||| GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 GGCATGGCTT GGTTTGATTT CCAGGGTGTT GTAAAGAAGA TGAAGGTGGT TCTTAAGAGA 76079 || |||| | |||||||||| ||||||||| |||||||| |||| ||| | |||||| GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TTCGATAAGA TATTTGAAAG CATGATTGAT CAAAGACAAA AATTGGACAG AAACGGTTTT 76139 | ||||| | ||||||| || |||||||||| |||||||||| || || | || ||| || || TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACAAA AAATGAATAG AAATGGGGTT 302 GGCCAAGAAA GCAAAGACTT TCTGCAAGTT TTGCTGAAGT TGAAAGATGA AGCAGATGCC 76199 |||||||||| |||| ||||| | |||||||| |||||||||| |||||||||| ||||||| || GGCCAAGAAA GCAAGGACTT TTTGCAAGTT TTGCTGAAGT TGAAAGATGA AGCAGATCCC 362 AAAATGCCAC TGACTATGAC TGAAATCAAA GCCTTACTTA TGGTATGTTT ATCATTTGTG 76259 |||||||| | |||| ||||| |||| ||||| |||||||||| | AAAATGCCTC TGACCATGAC TGAACTCAAA GCCTTACTTA CG........ .......... 404 CATTCTATTA AATTTGTTTT ATCCATACGA ACCAAAAAGA AATCTTCCTC TCCCCAGTTA 76319 .......... .......... .......... .......... .......... .......... 404 TCACTGCATT ATTATTGAGT AGCCAAGATG CAACCATTCA TACCTTATCT ATATGGATTA 76379 .......... .......... .......... .......... .......... .......... 404 TTTATTAGCT TACACAGTTA CACTAATCAT GATGGCAGAT CTGTTTTTTT TAATATTAAA 76439 .......... .......... .......... .......... .......... .......... 404 AAGGATCAAA ATTCATTGTG TCATATGGGA AATAAATTTC AGAAGAATCA GATTAATAAA 76499 .......... .......... .......... .......... .......... .......... 404 TTTATGTCCT GAGCTGTTGG TTGCGTTCTT CTGCTAGGAA AATTCACTTT CATTACATGT 76559 .......... .......... .......... .......... .......... .......... 404 TGTGCTGGTT ACAAAAGTTT GCATTTTACT GTCAATTAAA ACTGTGAACC TGAAATCAAA 76619 .......... .......... .......... .......... .......... .......... 404 TATATAATTA TACAATTAAA AATCTGCTGT ACATGATAAT GACTGTGGAC AGGATATGGT 76679 |||||||| .......... .......... .......... .......... .......... ..GATATGGT 412 TACCGGTGGA GCTAGCTCAA CGTCCAACGC GATAGAGTTT GCCATGGCTG AAATTATGAA 76739 | |||||| || | | ||||| | | |||||| |||||| ||| |||||||||| TGTTGGTGGA ACTGAAACTA GTGCCAACAC AGTTGAGTTT GCCATGACTG AAATTATGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (75840 76241,76672 76739) ******************************************************************************** EST sequence 94 +strand 260 n (File: SGN-E554086+) 1 ATCCCAGAAT GCCTATGACC CTGACTGAAT TCCAAGCCTT ACTTATGGAT ATGATTGTTG 61 GTGGAACTGA TAGTACCTCC GACGCGATTG AGTTTGCGAT GGCTGAAATT ATGATTAAAC 121 CGGACATCCT GAGGAAATTA CAAGAAGAAA TAGAAACAGT TGTGGGAAAG GATAATATTG 181 TGGAAGAGTC TCATATTAAG CAATTACCAT ATCTCTATGC AGTTTTTAAA GAAGTATTGT 241 CTTTACATCC ACCTGCTCCA Predicted gene structure (within gDNA segment 75143 to 77827): Exon 1 76195 76241 ( 47 n); cDNA 1 47 ( 47 n); score: 0.830 Intron 1 76242 76671 ( 430 n); Pd: 0.999 (s: 0.83), Pa: 0.993 (s: 0.72) Exon 2 76672 76884 ( 213 n); cDNA 48 260 ( 213 n); score: 0.836 MATCH C08HBa0060C12.1+ SGN-E554086+ 0.836 260 1.000 C PGS_C08HBa0060C12.1+_SGN-E554086+ (76195 76241,76672 76884) Alignment (genomic DNA sequence = upper lines): ATGCCAAAAT GCCACTGACT ATGACTGAAA TCAAAGCCTT ACTTATGGTA TGTTTATCAT 76254 || ||| ||| ||| |||| |||||||| || ||||||| ||||||| ATCCCAGAAT GCCTATGACC CTGACTGAAT TCCAAGCCTT ACTTATG... .......... 47 TTGTGCATTC TATTAAATTT GTTTTATCCA TACGAACCAA AAAGAAATCT TCCTCTCCCC 76314 .......... .......... .......... .......... .......... .......... 47 AGTTATCACT GCATTATTAT TGAGTAGCCA AGATGCAACC ATTCATACCT TATCTATATG 76374 .......... .......... .......... .......... .......... .......... 47 GATTATTTAT TAGCTTACAC AGTTACACTA ATCATGATGG CAGATCTGTT TTTTTTAATA 76434 .......... .......... .......... .......... .......... .......... 47 TTAAAAAGGA TCAAAATTCA TTGTGTCATA TGGGAAATAA ATTTCAGAAG AATCAGATTA 76494 .......... .......... .......... .......... .......... .......... 47 ATAAATTTAT GTCCTGAGCT GTTGGTTGCG TTCTTCTGCT AGGAAAATTC ACTTTCATTA 76554 .......... .......... .......... .......... .......... .......... 47 CATGTTGTGC TGGTTACAAA AGTTTGCATT TTACTGTCAA TTAAAACTGT GAACCTGAAA 76614 .......... .......... .......... .......... .......... .......... 47 TCAAATATAT AATTATACAA TTAAAAATCT GCTGTACATG ATAATGACTG TGGACAGGAT 76674 ||| .......... .......... .......... .......... .......... .......GAT 50 ATGGTTACCG GTGGAGCTAG CTCAACGTCC AACGCGATAG AGTTTGCCAT GGCTGAAATT 76734 ||| || | ||||| || || ||| ||||||| | ||||||| || |||||||||| ATGATTGTTG GTGGAACTGA TAGTACCTCC GACGCGATTG AGTTTGCGAT GGCTGAAATT 110 ATGAACAGAC CAGACGTCTT GAGGAAATTA CAAGAAGAAG TAGAAGCAGT TGTGGGAAAA 76794 |||| | || | ||| || | |||||||||| ||||||||| ||||| |||| ||||||||| ATGATTAAAC CGGACATCCT GAGGAAATTA CAAGAAGAAA TAGAAACAGT TGTGGGAAAG 170 GATAATATTG TGGAAGAGTC TCATCTTAAG CAATTACCAT ATCTCTATGC AGTGATGAAA 76854 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||| | ||| GATAATATTG TGGAAGAGTC TCATATTAAG CAATTACCAT ATCTCTATGC AGTTTTTAAA 230 GAAGCCTTGC GCATACATCC AACTGCTCCA 76884 |||| ||| ||||||| | |||||||| GAAGTATTGT CTTTACATCC ACCTGCTCCA 260 hqPGS_C08HBa0060C12.1+_SGN-E554086+ (76195 76241,76672 76884) ******************************************************************************** EST sequence 326 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 69379 to 78423): Exon 1 76198 76241 ( 44 n); cDNA 1 44 ( 44 n); score: 0.955 Intron 1 76242 76671 ( 430 n); Pd: 0.999 (s: 0.95), Pa: 0.993 (s: 0.80) Exon 2 76672 77303 ( 632 n); cDNA 45 676 ( 632 n); score: 0.889 MATCH C08HBa0060C12.1+ SGN-E378974- 0.889 676 0.929 C PGS_C08HBa0060C12.1+_SGN-E378974- (76198 76241,76672 77303) Alignment (genomic DNA sequence = upper lines): CCAAAATGCC ACTGACTATG ACTGAAATCA AAGCCTTACT TATGGTATGT TTATCATTTG 76257 |||||||||| ||||| ||| |||||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 TGCATTCTAT TAAATTTGTT TTATCCATAC GAACCAAAAA GAAATCTTCC TCTCCCCAGT 76317 .......... .......... .......... .......... .......... .......... 44 TATCACTGCA TTATTATTGA GTAGCCAAGA TGCAACCATT CATACCTTAT CTATATGGAT 76377 .......... .......... .......... .......... .......... .......... 44 TATTTATTAG CTTACACAGT TACACTAATC ATGATGGCAG ATCTGTTTTT TTTAATATTA 76437 .......... .......... .......... .......... .......... .......... 44 AAAAGGATCA AAATTCATTG TGTCATATGG GAAATAAATT TCAGAAGAAT CAGATTAATA 76497 .......... .......... .......... .......... .......... .......... 44 AATTTATGTC CTGAGCTGTT GGTTGCGTTC TTCTGCTAGG AAAATTCACT TTCATTACAT 76557 .......... .......... .......... .......... .......... .......... 44 GTTGTGCTGG TTACAAAAGT TTGCATTTTA CTGTCAATTA AAACTGTGAA CCTGAAATCA 76617 .......... .......... .......... .......... .......... .......... 44 AATATATAAT TATACAATTA AAAATCTGCT GTACATGATA ATGACTGTGG ACAGGATATG 76677 ||| || .......... .......... .......... .......... .......... ....GATTTG 50 GTTACCGGTG GAGCTAGCTC AACGTCCAAC GCGATAGAGT TTGCCATGGC TGAAATTATG 76737 ||| ||||| || || | | ||| |||||| ||| | |||| |||||||||| ||||||| || GTTGTCGGTG GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG 110 AACAGACCAG ACGTCTTGAG GAAATTACAA GAAGAAGTAG AAGCAGTTGT GGGAAAAGAT 76797 |||| ||||| | || |||| ||| ||||| ||||||||| | ||||||| |||||||||| AACAAACCAG ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT 170 AATATTGTGG AAGAGTCTCA TCTTAAGCAA TTACCATATC TCTATGCAGT GATGAAAGAA 76857 || || |||| |||||||||| | || | || |||||||||| |||||||||| |||||||||| AACATAGTGG AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA 230 GCCTTGCGCA TACATCCAAC TGCTCCACTA TTGGTGCCTC ATTGTCCAAG TGAAACATGC 76917 ||| |||||| |||||||| | ||||| |||| |||| ||||||| || ||| ||| | GCCATGCGCA TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC 290 ACTGTGGGAG GATACACTAT TCCTAAAGGA TCTTGTGTTT TCATAAATGT ATGGGCTATA 76977 ||||| || | |||||||| | ||||||||| ||| |||||| | ||||||| |||||||||| ACTGTTGGTG GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA 350 CACAGAGATC CTTCTATCTG GAAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC 77037 |||||||||| ||||||| || |||||||||| || |||||| |||||||||| ||||||||| CACAGAGATC CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT 410 AATAAATGGG ATTTTAGTGG AAATGATTTC AACTATTTCC CGTTTGGTTC TGGCAGAAGA 77097 ||||||||| ||| |||||| |||||||||| |||||||||| | |||||||| |||||||||| AATAAATGGA ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA 470 ATCTGTGTGG GGCTAGACAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT 77157 || |||| || || ||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGTGCGG GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT 530 CATTCTTTCG ACTGGAAATT GCCTGAAGGA GAGACATTAG AAGTTACAGA GAAGTTTGGT 77217 |||||||||| | |||||||| |||||||||| ||||| |||| | ||| ||| ||||||| || CATTCTTTCG ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT 590 ATTATTATGA AGAAGAAAAT GCCTCTGGTG GCTATACCGA CTCCAAGATT GTCCAATCCA 77277 ||| | ||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ATTGCTTTGA AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA 650 TCACTCTATG AGTAAGATAA AAATGT 77303 ||| |||| |||||||||| |||||| ACACAGTATG AGTAAGATAA AAATGT 676 hqPGS_C08HBa0060C12.1+_SGN-E378974- (76198 76241,76672 77303) ******************************************************************************** EST sequence 86 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 74697 to 77269): Exon 1 75297 76109 ( 813 n); cDNA 1 813 ( 813 n); score: 0.881 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.881 813 0.999 C PGS_C08HBa0060C12.1+_SGN-E553649+ (75297 76109) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTCCC CATGGCTCCT TCAACAACTC 75356 |||||||||| |||||||||| |||||||||| ||||||| || |||||| ||| |||||||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATGTTGAGG AAAATGCTGT GTTTTTCTCC TGTTTTCTTG GTTTTTCAGC TTTACTTTGG 75416 ||||||||| || | ||| | ||||||| | |||||||||| |||||| ||| |||||||||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TATTTCATCA GAAACTCAAA CAAGGGATTG CCACCAGGGC CTAAACCTTT GCCCTTGATA 75476 | |||||||| | ||||| || ||| || || |||||||||| ||||| |||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GGTAATCTTC ATTCTCTTGA ACCTCAACTT CATACCTATT TTACATCTCT TTCCCAAACT 75536 |||||||| | |||||||||| ||| ||||| || ||||||| || ||||||| ||||||| | GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 240 TATGGTCCTA TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTGTTAT TGCTTCGCCT 75596 ||||| || | |||||||| | |||||||||| ||||| ||| ||||| |||| | |||| || TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 300 GCTTTAGCTC GCGAGGTTCT TAAGGATAAA GATACCATTT TTGCTAACAG AGATGTCCCT 75656 | ||||||| |||| ||||| ||||||||| |||| |||| |||||||||| ||| || ||| GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 360 GCTGCTGGAA GAGAATTTTC CTACGGTGTG AATGACTTAC TTTGGACTCC TTATGGACCG 75716 ||||||| | |||| |||| || ||| |||||| ||| |||||| | | ||||||||| GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 420 AAATGGCGAA TGTTGAGGAA GGTTTGTGTT CGTGATATGC TTAGTTGTTC TACATTAGAT 75776 ||||||||| || |||| || | |||||||| || ||||||| |||||||||| ||| |||||| CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 480 TCTGTTTATG CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAAATACTT GTATAGTCAG 75836 ||||||| || |||||||| |||||||||| |||||||||| | || ||||| |||||| || TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 540 AAGGGTTTAC CGGTGAATGT TGGTGAACAG ATGTTCTTGA CTGTGCTTAA TGTGATTACA 75896 |||||||||| | ||||| || |||||| ||| |||||||||| ||||| |||| |||||||||| AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 600 AGCATGTTAT GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTAGTGTTGG AGCGGAGTTT 75956 |||||||||| ||||| |||| |||||||||| |||||||||| ||| | |||| || |||||| AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 660 AGGCATGTTG TGACTGAGAT AGCTCAGTTG ATCAGTATTC CCAATCTTTC CGATTTTTAC 76016 ||| |||||| ||| |||||| ||| | || |||||||| |||||||||| |||||| ||| AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 720 CCAGGCATGG CTTGGTTTGA TTTCCAGGGT GTTGTAAAGA AGATGAAGGT GGTTCTTAAG 76076 ||||| ||| | |||||||| |||||||||| ||| ||||| |||||||| | | | | ||| CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 780 AGATTCGATA AGATATTTGA AAGCATGATT GAT 76109 ||||| || | |||||||||| ||||||||| ||| AGATTTGAGA AGATATTTGA TAGCATGATT GAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (75297 76109) ******************************************************************************** EST sequence 100 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 73187 to 81495): Exon 1 75303 76076 ( 774 n); cDNA 1 771 ( 771 n); score: 0.868 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.868 774 1.003 C PGS_C08HBa0060C12.1+_SGN-E554337+ (75303 76076) Alignment (genomic DNA sequence = upper lines): CTCAAATTCT -TCAAAC-C- CCTTTTTGAT TCTTCCCCAT GGCTCC-TTC AACAACTCAA 75358 |||| ||||| |||||| | ||||||||| |||| ||||| |||||| ||| |||| ||||| CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 60 TGTTGAGGAA AATGC-TGTG TTTTTCTCCT GTTTTCTTGG TTTTTCAGCT TTACTTTGGT 75417 || |||| | || || ||| ||||||||| ||||| |||| ||||| |||| |||||||||| TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 120 ATTTCATCAG AAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 75477 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 180 GTAATCTTCA TTCTCTTGAA CCTCAACTTC ATACCTATTT TACATCTCTT TCCCAAACTT 75537 ||||||| | |||||||| | || | | |||||||| | |||||||| |||||||||| GTAATCTCTA TTCTCTTG-A --TC--C--C --ACCTATTT TGCATCTCTT TCCCAAACTT 231 ATGGTCCTAT TTGTAGACTC TGGCTTGGTA AAAAAGTTGG GATTGTTATT GCTTCGCCTG 75597 |||| || || |||||||||| |||||||||| |||||||||| |||| ||||| |||| ||| ATGGCCCCAT TTGTAGACTC TGGCTTGGTA AAAAAGTTGG GATTATTATT ACTTCACCTA 291 CTTTAGCTCG CGAGGTTCTT AAGGATAAAG ATACCATTTT TGCTAACAGA GATGTCCCTG 75657 | |||||||| ||||||||| |||||||||| | |||||||| |||||||||| |||||||| | CCTTAGCTCG TGAGGTTCTT AAGGATAAAG ACACCATTTT TGCTAACAGA GATGTCCCAG 351 CTGCTGGAAG AGAATTTTCC TACGGTGTGA ATGACTTACT TTGGACTCCT TATGGACCGA 75717 |||||| || |||||| || || |||| | || | |||| |||||||||| |||||||||| CTGCTGCAAA AGAATTATCA TATGGTGGCA ATAGCATACT TTGGACTCCT TATGGACCGA 411 AATGGCGAAT GTTGAGGAAG GTTTGTGTTC GTGATATGCT TAGTTGTTCT ACATTAGATT 75777 ||||| |||| |||||||||| ||||| |||| | ||||||| ||||| |||| || ||||||| AATGGAGAAT GTTGAGGAAG GTTTGCGTTC GCAATATGCT TAGTTATTCT ACTTTAGATT 471 CTGTTTATGC ACTAAGGAAA AGGGAGCTTA GACAATCGAT CAAATACTTG TATAGTCAGA 75837 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| || ||||||| CTGTTTATGC ACTAAGGAAA AGGGAGCTTA GACAATCGAT CAATTACTTC TACAGTCAGA 531 AGGGTTTACC GGTGAATGTT GGTGAACAGA TGTTCTTGAC TGTGCTTAAT GTGATTACAA 75897 |||||||||| || |||||| ||||| |||| ||||||||| | |||||| |||||||||| AGGGTTTACC AGTAAATGTT GGTGAGCAGA TGTTCTTGAG TTCACTTAAT GTGATTACAA 591 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TAGTGTTGGA GCGGAGTTTA 75957 |||||||||| |||||||||| |||||||||| |||||||||| || | ||||| || ||||||| GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGA GCTGAGTTTA 651 GGCATGTTGT GACTGAGATA GCTCAGTTGA TCAGTATTCC CAATCTTTCC GATTTTTACC 76017 ||||| |||| ||||| || ||| | || |||||||||| |||| |||| |||||||||| GGCATATTGT CACTGAAATG GCTGCGCTGG TCAGTATTCC CAATTATTCC GATTTTTACC 711 C-AGGCATGG CTTGGTTTGA TTTCCAGGGT GTTGTAAAGA AGATGAAGGT GGTTCTTAAG 76076 | ||| ||| | |||||||| |||||| ||| |||| ||| | ||||||| | ||| ||| CGGGGCTTGG CCTGGTTTGA TTTCCAAGGT GTTGCAAAAA AGATGAAAGG TGTTGGCAAG 771 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (75303 76076) ******************************************************************************** EST sequence 128 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 74864 to 76649): Exon 1 75464 75949 ( 486 n); cDNA 1 486 ( 486 n); score: 0.877 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.877 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (75464 75949) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGTAATC TTCATTCTCT TGAACCTCAA CTTCATACCT ATTTTACATC 75523 |||||||||| |||||||||| | |||||||| |||||||||| ||||| |||| |||| |||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTTTCCCAA ACTTATGGTC CTATTTGTAG ACTCTGGCTT GGTAAAAAAG TTGGGATTGT 75583 ||||||| || | |||||| | | |||||||| | |||||||| ||||||||| |||||||| | TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TATTGCTTCG CCTGCTTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 75643 | || |||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGATGTC CCTGCTGCTG GAAGAGAATT TTCCTACGGT GTGAATGACT TACTTTGGAC 75703 ||||||||| || ||||| | |||||| | | | || ||| | | |||| || ||||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TCCTTATGGA CCGAAATGGC GAATGTTGAG GAAGGTTTGT GTTCGTGATA TGCTTAGTTG 75763 |||||||||| || || |||| | |||||||| |||||||||| |||| || | |||||| | TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACATTA GATTCTGTTT ATGCACTAAG GAAAAGGGAG CTTAGACAAT CGATCAAATA 75823 |||||| ||| ||| || ||| ||||||| || | ||||||| |||||||||| |||| || || TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTGTATAGT CAGAAGGGTT TACCGGTGAA TGTTGGTGAA CAGATGTTCT TGACTGTGCT 75883 ||| |||| | |||| || | || ||||| |||||||||| |||||||| | |||||| || CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTAGTGT 75943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| | | TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGAGC 75949 ||| || TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (75464 75949) ******************************************************************************** EST sequence 203 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 75674 to 81975): Exon 1 76996 77288 ( 293 n); cDNA 3 295 ( 293 n); score: 0.911 Intron 1 77289 78261 ( 973 n); Pd: 0.973 (s: 0.94), Pa: 0.864 (s: 0.54) Exon 2 78262 78320 ( 59 n); cDNA 296 352 ( 57 n); score: 0.508 Intron 2 78321 78655 ( 335 n); Pd: 0.853 (s: 0.50), Pa: 0.000 (s: 0.56) Exon 3 78656 78710 ( 55 n); cDNA 353 405 ( 53 n); score: 0.564 Intron 3 78711 78979 ( 269 n); Pd: 0.000 (s: 0.56), Pa: 0.000 (s: 0.59) Exon 4 78980 79023 ( 44 n); cDNA 406 445 ( 40 n); score: 0.591 Intron 4 79024 79053 ( 30 n); Pd: 0.000 (s: 0.59), Pa: 0.000 (s: 0.82) ?? Exon 5 79054 79174 ( 121 n); cDNA 446 566 ( 121 n); score: 0.785 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.801 572 0.850 C PGS_C08HBa0060C12.1+_SGN-E320419+ (76996 77288,78262 78320,78656 78710,78980 79023,79054 79174) Alignment (genomic DNA sequence = upper lines): TGGAAAAATC CAACTGAGTT CCGTCCAGAG AGATTTTTGG ACAATAAATG GGATTTTAGT 77055 ||| |||||| |||||||||| || ||| || |||||| ||| | |||||||| ||| || ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGAAATGATT TCAACTATTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGCTAGAC 77115 |||||||||| | | ||| || |||||||||| |||||||||| |||||||||| |||| ||| | GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCA TTCATTCTTT CGACTGGAAA 77175 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 TTGCCTGAAG GAGAGACATT AGAAGTTACA GAGAAGTTTG GTATTATTAT GAAGAAGAAA 77235 |||||||||| |||||||||| ||| ||||| |||||||||| | || | |||||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATGCCTCTGG TGGCTATACC GACTCCAAGA TTGTCCAATC CATCACTCTA TGAGTAAGAT 77295 |||||||||| |||||||||| ||||||||| || ||||||| || ||||||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA....... 295 AAAAATGTGT CTGTAGAGAG TCGCATTTTG TATGATTATT ATTATTATTA TTATTTTATA 77355 .......... .......... .......... .......... .......... .......... 295 AATAGAGCAT TCTTGCTCAG TGTATGATAA TAATGTCTTT TGTATGATGA ACTATGAAAA 77415 .......... .......... .......... .......... .......... .......... 295 TGGGATCCAT TTTAAATTGA TTCAAAGGTT TCTATACAGT TTGTGCCCTA ACTCAAACAA 77475 .......... .......... .......... .......... .......... .......... 295 GGGATTGCCA CCAGGGCCTA AAGGTTTGCC CTTGATAGGT AATCTCCATT GTCTTCAACC 77535 .......... .......... .......... .......... .......... .......... 295 TGAACTTCAT ATCTATTTTG CATTTTTGAA CAAGAAATTT TAATGATACC AATATAATCA 77595 .......... .......... .......... .......... .......... .......... 295 ATTGAGCGAA ATTATCAGTC TTAATGATAA CAATACAATA TATGTTACTG ATTAGTATCC 77655 .......... .......... .......... .......... .......... .......... 295 GTTAAGCGAA ATTATCACCC TTATGATACC AATACATTAT ATTATATAAA TTTAGTATAA 77715 .......... .......... .......... .......... .......... .......... 295 GCGAAATTAG TTGGGGTATA TAGTGTAATT ATTTAGTGAA TATAAATATA AATGGGTATA 77775 .......... .......... .......... .......... .......... .......... 295 TGTTTGTAAT TATTTTACTT TTATGGAATA TTTGCTTAGT TTTCCGTTTA TTCGTTCCTT 77835 .......... .......... .......... .......... .......... .......... 295 TTTATCTTTT CCAGATTTAT GTACTCTTTT GATTCTTAAT TATAAAATGA CGCTTGGGTT 77895 .......... .......... .......... .......... .......... .......... 295 TTATTCATTA AAAGAAGGAG CTACATATTT CTTCCTAATA AAAAGAATAT ATCTTTAATT 77955 .......... .......... .......... .......... .......... .......... 295 ATAAAATTGA CTAAAAATGA AAATAATTAG CTATTGCACA AATTCAATAT CCAAATAGAG 78015 .......... .......... .......... .......... .......... .......... 295 ATACTAAAAT ACCACATGCT AGGCTAGTGT ATACAAAACA AAAAACCATG GTAAATTATA 78075 .......... .......... .......... .......... .......... .......... 295 AATAATAATA ACACAACAAT AGAAAATTGT ACAATAACAA CAAGCAAGAA ATATAAATGT 78135 .......... .......... .......... .......... .......... .......... 295 TAAACCAAAC AAATAAAAAG AGATAAGAGA AGAGATCACA AAGATTTTCA CATATATATT 78195 .......... .......... .......... .......... .......... .......... 295 TTTCAATAAT TGGTTTAAGT GTACATTATT GTGTCAAATG TTCCTATTTA TAGGATAACA 78255 .......... .......... .......... .......... .......... .......... 295 TTGCAGAACA CGAGTTGTCA TGAATATGAT ATTAATCCAT TTGAGATTAT GGACGAGAGA 78315 ||| || | | | || | | | || ||| ||| | | | || || | ......GACA -GACAAGGTA TCAAAAAG-T GAAGATTCAT TTGTGTTAAA CAACAAGGGG 347 TGAGAGTAAA AATCACAATG TATATAATTA GTGGGAGATA CATACGTATA TTTACATAAT 78375 | CCATT..... .......... .......... .......... .......... .......... 352 GAAGAGTTGG TGGTAATAAA AATTATGTAT ACTAATATGA TGATTTTCTT TTAACTATTT 78435 .......... .......... .......... .......... .......... .......... 352 GCTATTTAAT TTATTAAACA ATTTATAACA TTTAAATGTA ATGTAGAAGT AAAATTGTAA 78495 .......... .......... .......... .......... .......... .......... 352 TCTAAAGGAT AAAATATGTA AAACAATTCA AATATATTAA ATGTGTAATG AAATTCATTA 78555 .......... .......... .......... .......... .......... .......... 352 TGACTAATAA TTAGAAAATT CATGGTAATT ATAATTATGA AAAATCATCA TTATTACTAT 78615 .......... .......... .......... .......... .......... .......... 352 GTGGAAGATG TAAAGGTTGT TGATTTTTTC TTGCTAATAA TAATTTACAA TTTAATAATG 78675 | || | | | ||| || .......... .......... .......... .......... GACTTCATCA CTAAAT-ATA 371 AGTATTGAAT TGTAAGTCTG GCTAAAAATA AGAGTATTAA TTAACATAAT ACGAACCCGT 78735 | | ||||| || || || ||| | | | | AATGTTGAAG TGGAA-AATG GCTTCCCACC ACACT..... .......... .......... 405 TAAAAATTCA TTGAATATCA AAATAAATAT CAAATGAAAA AATAATATTT TAAATAATTT 78795 .......... .......... .......... .......... .......... .......... 405 CAGGAAAAAA TAAATTAATA GTTAAAAAAT ATTTGTGTAA TTCAACTTTT GACTTATAGT 78855 .......... .......... .......... .......... .......... .......... 405 ACATGTAAGA TGTAAAGATT GTTAGTGTTT TCTTGCTAAT AATAAGTGTT GTTGCATCGT 78915 .......... .......... .......... .......... .......... .......... 405 AAGTCTAGCT GGAAGTAGAA GTACAAAAGT AAAGAATGGT CAAAATTCAT TAAATTAAAA 78975 .......... .......... .......... .......... .......... .......... 405 AAAGGTCTGT TTATATTCAT CTCATTCTTT CTGCAAAGTC AAAACAAAGT AAAAATTTTA 79035 || | | ||| | |||||| ||| || | || | | | | ....GT-TTC TGCCATTTCT CTCATT-TTT CT-CTTAGGC -TGATATA.. .......... 445 GGGGTGCAAA AGCTTCAGAT GTCTCTCAAA TTCTTCAAAC CCCTTTTTGA TTCTTTTCCA 79095 || ||| || ||| |||||||||| | | | ||| |||||| ||| .......... ........AT GTCACTAAAA TTCTTCAAAC CTTTGTGTGA TTCTTTCCCA 487 TGGCCCCTTC AAGAACTCAA TGTTGAGCAA AATGGTGTGT TTTTCTCCTG TTTTCTTGGG 79155 |||||| | |||||| || | |||| | | |||||| | ||||||||| | ||||||| TGGCCCTGGC AAGAACAAAA TAGTGAGAAG AGTGGTGTAT TTTTCTCCTA TGTTCTTGGC 547 TTCTTAGCTT TACTTTGGT 79174 ||||||| || | |||| AGTTTAGCTT TAATATGGT 566 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (76996 77288,78262 78320,78656 78710,78980 79023,79054 79174) ******************************************************************************** EST sequence 54 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 75933 to 79978): Exon 1 76794 77347 ( 554 n); cDNA 1 554 ( 554 n); score: 0.909 Intron 1 77348 77442 ( 95 n); Pd: 0.000 (s: 0.70), Pa: 0.900 (s: 0) Exon 2 77443 77457 ( 15 n); cDNA 555 569 ( 15 n); score: 0.667 Intron 2 77458 79162 (1705 n); Pd: 0.000 (s: 0), Pa: 0.946 (s: 0) Exon 3 79163 79172 ( 10 n); cDNA 570 579 ( 10 n); score: 0.900 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.909 579 0.813 C PGS_C08HBa0060C12.1+_SGN-E551573+ (76794 77347,77443 77457,79163 79172) Alignment (genomic DNA sequence = upper lines): AGATAATATT GTGGAAGAGT CTCATCTTAA GCAATTACCA TATCTCTATG CAGTGATGAA 76853 |||||||||| || ||||||| ||||| || | |||||||||| |||||||||| |||||||||| AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 60 AGAAGCCTTG CGCATACATC CAACTGCTCC ACTATTGGTG CCTCATTGTC CAAGTGAAAC 76913 ||||| ||| ||||| |||| || || |||| ||||||||| || ||||||| |||||||||| AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 120 ATGCACTGTG GGAGGATACA CTATTCCTAA AGGATCTTGT GTTTTCATAA ATGTATGGGC 76973 |||||||||| |||||||||| || ||||||| ||||||| || |||||||||| |||||||||| ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 180 TATACACAGA GATCCTTCTA TCTGGAAAAA TCCAACTGAG TTCCGTCCAG AGAGATTTTT 77033 |||||| ||| |||||||||| |||||| ||| |||||| ||| |||||||||| |||||||||| TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 240 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTCCCGTTTG GTTCTGGCAG 77093 |||||||||| |||||||||| |||||||||| |||||||||| || || |||| |||||||||| GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 300 AAGAATCTGT GTGGGGCTAG ACATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT 77153 |||||||||| |||||| ||| ||||||||| |||||||||| |||||| ||| ||||||| || AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 360 CATTCATTCT TTCGACTGGA AATTGCCTGA AGGAGAGACA TTAGAAGTTA CAGAGAAGTT 77213 |||||||||| || || |||| |||||||||| |||||||||| ||| ||| |||||| ||| CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 420 TGGTATTATT ATGAAGAAGA AAATGCCTCT GGTGGCTATA CCGACTCCAA GATTGTCCAA 77273 || ||||| | ||| ||||| |||| ||||| |||| ||||| || ||||||| |||||||||| TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 480 TCCATCACTC TATGAGTAAG ATAAAAATGT GTCTGTAGAG AGTCGCATTT TGTATGATTA 77333 |||| ||||| |||||||||| ||||| || | ||||| ||| ||||| || |||||||| | TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 540 TTAT-TATTA TTATTATTTT ATAAATAGAG CATTCTTGCT CAGTGTATGA TAATAATGTC 77392 || | ||||| | | TTCTGTATTA -TCTC..... .......... .......... .......... .......... 554 TTTTGTATGA TGAACTATGA AAATGGGATC CATTTTAAAT TGATTCAAAG GTTTCTATAC 77452 | ||| | | .......... .......... .......... .......... .......... GAATCTGTGC 564 AGTTTGTGCC CTAACTCAAA CAAGGGATTG CCACCAGGGC CTAAAGGTTT GCCCTTGATA 77512 | ||| ATTTT..... .......... .......... .......... .......... .......... 569 GGTAATCTCC ATTGTCTTCA ACCTGAACTT CATATCTATT TTGCATTTTT GAACAAGAAA 77572 .......... .......... .......... .......... .......... .......... 569 TTTTAATGAT ACCAATATAA TCAATTGAGC GAAATTATCA GTCTTAATGA TAACAATACA 77632 .......... .......... .......... .......... .......... .......... 569 ATATATGTTA CTGATTAGTA TCCGTTAAGC GAAATTATCA CCCTTATGAT ACCAATACAT 77692 .......... .......... .......... .......... .......... .......... 569 TATATTATAT AAATTTAGTA TAAGCGAAAT TAGTTGGGGT ATATAGTGTA ATTATTTAGT 77752 .......... .......... .......... .......... .......... .......... 569 GAATATAAAT ATAAATGGGT ATATGTTTGT AATTATTTTA CTTTTATGGA ATATTTGCTT 77812 .......... .......... .......... .......... .......... .......... 569 AGTTTTCCGT TTATTCGTTC CTTTTTATCT TTTCCAGATT TATGTACTCT TTTGATTCTT 77872 .......... .......... .......... .......... .......... .......... 569 AATTATAAAA TGACGCTTGG GTTTTATTCA TTAAAAGAAG GAGCTACATA TTTCTTCCTA 77932 .......... .......... .......... .......... .......... .......... 569 ATAAAAAGAA TATATCTTTA ATTATAAAAT TGACTAAAAA TGAAAATAAT TAGCTATTGC 77992 .......... .......... .......... .......... .......... .......... 569 ACAAATTCAA TATCCAAATA GAGATACTAA AATACCACAT GCTAGGCTAG TGTATACAAA 78052 .......... .......... .......... .......... .......... .......... 569 ACAAAAAACC ATGGTAAATT ATAAATAATA ATAACACAAC AATAGAAAAT TGTACAATAA 78112 .......... .......... .......... .......... .......... .......... 569 CAACAAGCAA GAAATATAAA TGTTAAACCA AACAAATAAA AAGAGATAAG AGAAGAGATC 78172 .......... .......... .......... .......... .......... .......... 569 ACAAAGATTT TCACATATAT ATTTTTCAAT AATTGGTTTA AGTGTACATT ATTGTGTCAA 78232 .......... .......... .......... .......... .......... .......... 569 ATGTTCCTAT TTATAGGATA ACATTGCAGA ACACGAGTTG TCATGAATAT GATATTAATC 78292 .......... .......... .......... .......... .......... .......... 569 CATTTGAGAT TATGGACGAG AGATGAGAGT AAAAATCACA ATGTATATAA TTAGTGGGAG 78352 .......... .......... .......... .......... .......... .......... 569 ATACATACGT ATATTTACAT AATGAAGAGT TGGTGGTAAT AAAAATTATG TATACTAATA 78412 .......... .......... .......... .......... .......... .......... 569 TGATGATTTT CTTTTAACTA TTTGCTATTT AATTTATTAA ACAATTTATA ACATTTAAAT 78472 .......... .......... .......... .......... .......... .......... 569 GTAATGTAGA AGTAAAATTG TAATCTAAAG GATAAAATAT GTAAAACAAT TCAAATATAT 78532 .......... .......... .......... .......... .......... .......... 569 TAAATGTGTA ATGAAATTCA TTATGACTAA TAATTAGAAA ATTCATGGTA ATTATAATTA 78592 .......... .......... .......... .......... .......... .......... 569 TGAAAAATCA TCATTATTAC TATGTGGAAG ATGTAAAGGT TGTTGATTTT TTCTTGCTAA 78652 .......... .......... .......... .......... .......... .......... 569 TAATAATTTA CAATTTAATA ATGAGTATTG AATTGTAAGT CTGGCTAAAA ATAAGAGTAT 78712 .......... .......... .......... .......... .......... .......... 569 TAATTAACAT AATACGAACC CGTTAAAAAT TCATTGAATA TCAAAATAAA TATCAAATGA 78772 .......... .......... .......... .......... .......... .......... 569 AAAAATAATA TTTTAAATAA TTTCAGGAAA AAATAAATTA ATAGTTAAAA AATATTTGTG 78832 .......... .......... .......... .......... .......... .......... 569 TAATTCAACT TTTGACTTAT AGTACATGTA AGATGTAAAG ATTGTTAGTG TTTTCTTGCT 78892 .......... .......... .......... .......... .......... .......... 569 AATAATAAGT GTTGTTGCAT CGTAAGTCTA GCTGGAAGTA GAAGTACAAA AGTAAAGAAT 78952 .......... .......... .......... .......... .......... .......... 569 GGTCAAAATT CATTAAATTA AAAAAAGGTC TGTTTATATT CATCTCATTC TTTCTGCAAA 79012 .......... .......... .......... .......... .......... .......... 569 GTCAAAACAA AGTAAAAATT TTAGGGGTGC AAAAGCTTCA GATGTCTCTC AAATTCTTCA 79072 .......... .......... .......... .......... .......... .......... 569 AACCCCTTTT TGATTCTTTT CCATGGCCCC TTCAAGAACT CAATGTTGAG CAAAATGGTG 79132 .......... .......... .......... .......... .......... .......... 569 TGTTTTTCTC CTGTTTTCTT GGGTTCTTAG CTTTACTTTG 79172 ||||||| || .......... .......... .......... CTTTACTATG 579 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (76794 77347) ******************************************************************************** EST sequence 291 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 76270 to 79308): Exon 1 76988 77247 ( 260 n); cDNA 1 259 ( 259 n); score: 0.912 Intron 1 77248 77635 ( 388 n); Pd: 0.262 (s: 0.76), Pa: 0.000 (s: 0) Exon 2 77636 77649 ( 14 n); cDNA 260 272 ( 13 n); score: 0.857 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.912 274 0.757 C PGS_C08HBa0060C12.1+_SGN-E234103- (76988 77247,77636 77649) Alignment (genomic DNA sequence = upper lines): CTTCTATCTG GAAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAATGGG 77047 ||||||| || | |||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATTTTAGTGG AAATGATTTC AACTATTTCC CGTTTGGTTC TGGCAGAAGA ATCTGTGTGG 77107 ||| |||||| |||||||||| |||||||||| | |||||||| |||||||||| ||||||| || ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGCTAGACAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 77167 || ||| ||| |||| ||||| |||||||||| |||||||||| ||||||| | |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCTGAAGGA GAGACATTAG AAGTTACAGA GAAGTTTGGT ATTATTATGA 77227 |||||||||| |||||||||| |||||||||| | | ||||| ||||||||| ||| || ||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAGAAAAT GCCTCTGGTG GCTATACCGA CTCCAAGATT GTCCAATCCA TCACTCTATG 77287 ||||||| || | || | | AGAAGAAGAT GTCT-TATGG .......... .......... .......... .......... 259 AGTAAGATAA AAATGTGTCT GTAGAGAGTC GCATTTTGTA TGATTATTAT TATTATTATT 77347 .......... .......... .......... .......... .......... .......... 259 ATTTTATAAA TAGAGCATTC TTGCTCAGTG TATGATAATA ATGTCTTTTG TATGATGAAC 77407 .......... .......... .......... .......... .......... .......... 259 TATGAAAATG GGATCCATTT TAAATTGATT CAAAGGTTTC TATACAGTTT GTGCCCTAAC 77467 .......... .......... .......... .......... .......... .......... 259 TCAAACAAGG GATTGCCACC AGGGCCTAAA GGTTTGCCCT TGATAGGTAA TCTCCATTGT 77527 .......... .......... .......... .......... .......... .......... 259 CTTCAACCTG AACTTCATAT CTATTTTGCA TTTTTGAACA AGAAATTTTA ATGATACCAA 77587 .......... .......... .......... .......... .......... .......... 259 TATAATCAAT TGAGCGAAAT TATCAGTCTT AATGATAACA ATACAATATA TGTTACTGAT 77647 || | ||| |||| .......... .......... .......... .......... ........TA T-TTAGTGAT 270 TA 77649 || TA 272 hqPGS_C08HBa0060C12.1+_SGN-E234103- (76988 77247) ******************************************************************************** EST sequence 302 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 76173 to 79317): Exon 1 76991 77247 ( 257 n); cDNA 1 257 ( 257 n); score: 0.897 Intron 1 77248 77635 ( 388 n); Pd: 0.262 (s: 0.74), Pa: 0.000 (s: 0) Exon 2 77636 77649 ( 14 n); cDNA 258 270 ( 13 n); score: 0.857 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.897 271 0.753 C PGS_C08HBa0060C12.1+_SGN-E234174- (76991 77247,77636 77649) Alignment (genomic DNA sequence = upper lines): CTATCTGGAA AAATCCAACT GA-GTTCCGT CCAGAGAGAT TTTTGGACAA TAAATGGGAT 77049 |||| ||| | |||||| ||| || ||||||| |||||||||| |||||||||| ||| |||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TTTAGTGGAA ATGATTTCAA CTATTTCCCG TTTGGTTCTG GCAGAAGAAT CTGTGTGGGG 77109 | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||| |||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 CTAGACATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCATTCA TTCTTTCGAC 77169 ||| ||||| |||||||||| |||||||||| |||||||||| ||||| | || |||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CTGAAGGAGA GACATTAGAA GTTACAGAGA AGTTTGGTAT TATTATGAAG 77229 |||||||||| |||||||||| |||||||| | ||||||| ||||||| || | || ||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATGC CTCTGGTGGC TATACCGACT CCAAGATTGT CCAATCCATC ACTCTATGAG 77289 ||||| ||| || | | AAGAAGATGT CT-TATGG.. .......... .......... .......... .......... 257 TAAGATAAAA ATGTGTCTGT AGAGAGTCGC ATTTTGTATG ATTATTATTA TTATTATTAT 77349 .......... .......... .......... .......... .......... .......... 257 TTTATAAATA GAGCATTCTT GCTCAGTGTA TGATAATAAT GTCTTTTGTA TGATGAACTA 77409 .......... .......... .......... .......... .......... .......... 257 TGAAAATGGG ATCCATTTTA AATTGATTCA AAGGTTTCTA TACAGTTTGT GCCCTAACTC 77469 .......... .......... .......... .......... .......... .......... 257 AAACAAGGGA TTGCCACCAG GGCCTAAAGG TTTGCCCTTG ATAGGTAATC TCCATTGTCT 77529 .......... .......... .......... .......... .......... .......... 257 TCAACCTGAA CTTCATATCT ATTTTGCATT TTTGAACAAG AAATTTTAAT GATACCAATA 77589 .......... .......... .......... .......... .......... .......... 257 TAATCAATTG AGCGAAATTA TCAGTCTTAA TGATAACAAT ACAATATATG TTACTGATTA 77649 ||| ||| |||||| .......... .......... .......... .......... ......TAT- TTAGTGATTA 270 hqPGS_C08HBa0060C12.1+_SGN-E234174- (76991 77247) ******************************************************************************** EST sequence 138 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 75925 to 78515): Exon 1 77056 77288 ( 233 n); cDNA 1 233 ( 233 n); score: 0.897 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.897 233 0.879 C PGS_C08HBa0060C12.1+_SGN-E243190+ (77056 77288) Alignment (genomic DNA sequence = upper lines): GGAAATGATT TCAACTATTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGCTAGAC 77115 |||||||||| |||||||| | ||| |||||| ||||| |||| || | || | |||| ||| | GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCA TTCATTCTTT CGACTGGAAA 77175 |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCTGAAG GAGAGACATT AGAAGTTACA GAGAAGTTTG GTATTATTAT GAAGAAGAAA 77235 ||||| |||| ||||||| || ||| | ||| |||||||||| | ||| || | |||||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATGCCTCTGG TGGCTATACC GACTCCAAGA TTGTCCAATC CATCACTCTA TGA 77288 |||||||||| |||||||||| ||||||||| ||||| ||| || |||||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (77056 77288) ******************************************************************************** EST sequence 37 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 78473 to 86353): Exon 1 79570 80004 ( 435 n); cDNA 1 435 ( 435 n); score: 1.000 Intron 1 80005 80378 ( 374 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 80379 80665 ( 287 n); cDNA 436 722 ( 287 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E378935+ 1.000 722 1.000 C PGS_C08HBa0060C12.1+_SGN-E378935+ (79570 80004,80379 80665) Alignment (genomic DNA sequence = upper lines): AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 79629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 79689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 79749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 79809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 79869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 79929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 79989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCATTT GTGCATTCTA CTAAATTTGC TTTAAACTGT 80049 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TCATCTCCTT ACTTGTTAGG CAGTTAACAG ATGAAAATTT GGGTTATAGT GATATCAGTC 80109 .......... .......... .......... .......... .......... .......... 435 AAAATGAGAG GATCAAATGC TAATAGAGTT AAAATTAGGA TTATAAATGT ATTGAATAAT 80169 .......... .......... .......... .......... .......... .......... 435 TATTAGATTC ATATATTCTT GTTCTGAACT GTTAGTTGCT AACATGTTAT TGGACTAACT 80229 .......... .......... .......... .......... .......... .......... 435 TAAGGAAAGA GTCGGCAAAT TTAGCATCAT ATAATATGTG AAGACTCACT GTGAATTATG 80289 .......... .......... .......... .......... .......... .......... 435 ACTGTGAACC TTGAACTGAA CTCTAATATA CAGTTCTACA AATAAAAACT TGTTGTACAT 80349 .......... .......... .......... .......... .......... .......... 435 GATAATAAAT TCACAAATAC CATGGACAGG ATTTGGTTGT CGGTGGAACT GACACAACTT 80409 | |||||||||| |||||||||| |||||||||| .......... .......... .........G ATTTGGTTGT CGGTGGAACT GACACAACTT 466 CCAACGCGGT TGAGTTTGCC ATGGCTGAAA TTTTGAACAA ACCAGATATC CTGAGAAAAA 80469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACGCGGT TGAGTTTGCC ATGGCTGAAA TTTTGAACAA ACCAGATATC CTGAGAAAAA 526 TACAACAAGA AGTAGATACA GTTGTGGGAA AAGATAACAT AGTGGAAGAG TCTCATATTC 80529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAACAAGA AGTAGATACA GTTGTGGGAA AAGATAACAT AGTGGAAGAG TCTCATATTC 586 AACAGTTACC ATATCTCTAT GCAGTGATGA AAGAAGCCAT GCGCATACAT CCAGCCCTCC 80589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGTTACC ATATCTCTAT GCAGTGATGA AAGAAGCCAT GCGCATACAT CCAGCCCTCC 646 CACTCTTGGC TCCTCATTGT CCTAGTGAGA CAATCACTGT TGGTGGATAC ACTGTTCCTA 80649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTCTTGGC TCCTCATTGT CCTAGTGAGA CAATCACTGT TGGTGGATAC ACTGTTCCTA 706 AAGGGTCTCG TGTTTT 80665 |||||||||| |||||| AAGGGTCTCG TGTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (79570 80004,80379 80665) ******************************************************************************** EST sequence 182 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 78970 to 81091): Exon 1 79570 80004 ( 435 n); cDNA 1 435 ( 435 n); score: 1.000 Intron 1 80005 80378 ( 374 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 80379 80481 ( 103 n); cDNA 436 538 ( 103 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E206806+ 1.000 538 1.000 C PGS_C08HBa0060C12.1+_SGN-E206806+ (79570 80004,80379 80481) Alignment (genomic DNA sequence = upper lines): AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 79629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 79689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 79749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 79809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 79869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 79929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 79989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCATTT GTGCATTCTA CTAAATTTGC TTTAAACTGT 80049 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TCATCTCCTT ACTTGTTAGG CAGTTAACAG ATGAAAATTT GGGTTATAGT GATATCAGTC 80109 .......... .......... .......... .......... .......... .......... 435 AAAATGAGAG GATCAAATGC TAATAGAGTT AAAATTAGGA TTATAAATGT ATTGAATAAT 80169 .......... .......... .......... .......... .......... .......... 435 TATTAGATTC ATATATTCTT GTTCTGAACT GTTAGTTGCT AACATGTTAT TGGACTAACT 80229 .......... .......... .......... .......... .......... .......... 435 TAAGGAAAGA GTCGGCAAAT TTAGCATCAT ATAATATGTG AAGACTCACT GTGAATTATG 80289 .......... .......... .......... .......... .......... .......... 435 ACTGTGAACC TTGAACTGAA CTCTAATATA CAGTTCTACA AATAAAAACT TGTTGTACAT 80349 .......... .......... .......... .......... .......... .......... 435 GATAATAAAT TCACAAATAC CATGGACAGG ATTTGGTTGT CGGTGGAACT GACACAACTT 80409 | |||||||||| |||||||||| |||||||||| .......... .......... .........G ATTTGGTTGT CGGTGGAACT GACACAACTT 466 CCAACGCGGT TGAGTTTGCC ATGGCTGAAA TTTTGAACAA ACCAGATATC CTGAGAAAAA 80469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACGCGGT TGAGTTTGCC ATGGCTGAAA TTTTGAACAA ACCAGATATC CTGAGAAAAA 526 TACAACAAGA AG 80481 |||||||||| || TACAACAAGA AG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (79570 80004,80379 80481) ******************************************************************************** EST sequence 152 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 78497 to 81456): Exon 1 79603 80004 ( 402 n); cDNA 3 404 ( 402 n); score: 0.883 Intron 1 80005 80378 ( 374 n); Pd: 0.999 (s: 0.94), Pa: 0.997 (s: 0.84) Exon 2 80379 80446 ( 68 n); cDNA 405 472 ( 68 n); score: 0.853 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.879 470 0.996 C PGS_C08HBa0060C12.1+_SGN-E205363+ (79603 80004,80379 80446) Alignment (genomic DNA sequence = upper lines): GGTTTACCAG TGAATGTTGG TGAACAGATG TTCTTGACTG TGCTTAATGT GATGACAAGC 79662 || | || | |||||||||| |||||||||| || ||||||| |||||||| ||| |||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GAGGCACGAT GAAGGGTGAG GAAAGAGCTA CTCTTGGAGC TGAGTTTAGG 79722 |||||||||| | ||||| | |||||||||| |||||||||| ||||||| || ||| ||||| ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 CATGTTGTGA CTGAGATAGC TGAGTTGATC AGTATTCCCA ATCTTTCTGA TTTTTACCCG 79782 ||||||||| || |||| |||| || | || ||| | ||||||| || |||||||||| GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 GGCTTGGCCT GGTTTGATTT CCAGGGTGTT ATAAAGAAGA TTAAGGTGTT GCTAAAGAGA 79842 || ||||||| |||||||||| ||||||||| | |||||||| | || ||||| | ||||||| GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TTTGATAAGA TATTTGAAAG CATGATTGAT CAAAGACAAA AATTAGACAG AAATGGTGTT 79902 | |||||| | ||||||| || |||||||||| |||||||||| || | | || |||||| ||| TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACAAA AAATGAATAG AAATGGGGTT 302 GGCCAAGAAA GCAAAGACTT TTTGCAAGTT TTGCTCAAGT TGAAAGATGA AGCAGATGCC 79962 |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| ||||||| || GGCCAAGAAA GCAAGGACTT TTTGCAAGTT TTGCTGAAGT TGAAAGATGA AGCAGATCCC 362 AAAATGCCTC TGACCATGAC TGAAATCAAA GCCTTACTTA TGGTATGTTT ATCATTTGTG 80022 |||||||||| |||||||||| |||| ||||| |||||||||| | AAAATGCCTC TGACCATGAC TGAACTCAAA GCCTTACTTA CG........ .......... 404 CATTCTACTA AATTTGCTTT AAACTGTTCA TCTCCTTACT TGTTAGGCAG TTAACAGATG 80082 .......... .......... .......... .......... .......... .......... 404 AAAATTTGGG TTATAGTGAT ATCAGTCAAA ATGAGAGGAT CAAATGCTAA TAGAGTTAAA 80142 .......... .......... .......... .......... .......... .......... 404 ATTAGGATTA TAAATGTATT GAATAATTAT TAGATTCATA TATTCTTGTT CTGAACTGTT 80202 .......... .......... .......... .......... .......... .......... 404 AGTTGCTAAC ATGTTATTGG ACTAACTTAA GGAAAGAGTC GGCAAATTTA GCATCATATA 80262 .......... .......... .......... .......... .......... .......... 404 ATATGTGAAG ACTCACTGTG AATTATGACT GTGAACCTTG AACTGAACTC TAATATACAG 80322 .......... .......... .......... .......... .......... .......... 404 TTCTACAAAT AAAAACTTGT TGTACATGAT AATAAATTCA CAAATACCAT GGACAGGATT 80382 ||| .......... .......... .......... .......... .......... ......GATA 408 TGGTTGTCGG TGGAACTGAC ACAACTTCCA ACGCGGTTGA GTTTGCCATG GCTGAAATTT 80442 ||||||| || ||||||||| || | | ||| || | ||||| |||||||||| |||||||| TGGTTGTTGG TGGAACTGAA ACTAGTGCCA ACACAGTTGA GTTTGCCATG ACTGAAATTA 468 TGAA 80446 |||| TGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (79603 80004,80379 80446) ******************************************************************************** EST sequence 327 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 79351 to 81806): Exon 1 79961 80004 ( 44 n); cDNA 1 44 ( 44 n); score: 1.000 Intron 1 80005 80378 ( 374 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 80379 81062 ( 684 n); cDNA 45 728 ( 684 n); score: 0.997 MATCH C08HBa0060C12.1+ SGN-E378974- 0.997 728 1.000 C PGS_C08HBa0060C12.1+_SGN-E378974- (79961 80004,80379 81062) Alignment (genomic DNA sequence = upper lines): CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGTATGT TTATCATTTG 80020 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 TGCATTCTAC TAAATTTGCT TTAAACTGTT CATCTCCTTA CTTGTTAGGC AGTTAACAGA 80080 .......... .......... .......... .......... .......... .......... 44 TGAAAATTTG GGTTATAGTG ATATCAGTCA AAATGAGAGG ATCAAATGCT AATAGAGTTA 80140 .......... .......... .......... .......... .......... .......... 44 AAATTAGGAT TATAAATGTA TTGAATAATT ATTAGATTCA TATATTCTTG TTCTGAACTG 80200 .......... .......... .......... .......... .......... .......... 44 TTAGTTGCTA ACATGTTATT GGACTAACTT AAGGAAAGAG TCGGCAAATT TAGCATCATA 80260 .......... .......... .......... .......... .......... .......... 44 TAATATGTGA AGACTCACTG TGAATTATGA CTGTGAACCT TGAACTGAAC TCTAATATAC 80320 .......... .......... .......... .......... .......... .......... 44 AGTTCTACAA ATAAAAACTT GTTGTACATG ATAATAAATT CACAAATACC ATGGACAGGA 80380 || .......... .......... .......... .......... .......... ........GA 46 TTTGGTTGTC GGTGGAACTG ACACAACTTC CAACGCGGTT GAGTTTGCCA TGGCTGAAAT 80440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTTGTC GGTGGAACTG ACACAACTTC CAACGCGGTT GAGTTTGCCA TGGCTGAAAT 106 TTTGAACAAA CCAGATATCC TGAGAAAAAT ACAACAAGAA GTAGATACAG TTGTGGGAAA 80500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAACAAA CCAGATATCC TGAGAAAAAT ACAACAAGAA GTAGATACAG TTGTGGGAAA 166 AGATAACATA GTGGAAGAGT CTCATATTCA ACAGTTACCA TATCTCTATG CAGTGATGAA 80560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAACATA GTGGAAGAGT CTCATATTCA ACAGTTACCA TATCTCTATG CAGTGATGAA 226 AGAAGCCATG CGCATACATC CAGCCCTCCC ACTCTTGGCT CCTCATTGTC CTAGTGAGAC 80620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCCATG CGCATACATC CAGCCCTCCC ACTCTTGGCT CCTCATTGTC CTAGTGAGAC 286 AATCACTGTT GGTGGATACA CTGTTCCTAA AGGGTCTCGT GTTTTTGTAA ATGTATGGGC 80680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACTGTT GGTGGATACA CTGTTCCTAA AGGGTCTCGT GTTTTTGTAA ATGTATGGGC 346 TATACACAGA GATCCTTCTA TGTGGAAAAA TCCAACAGAG TTCTGTCCAG AGAGATTTTT 80740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATACACAGA GATCCTTCTA TGTGGAAAAA TCCAACAGAG TTCTGTCCAG AGAGATTTTT 406 GGATAATAAA TGGAATTATA GTGGAAATGA TTTCAACTAT TTCCCATTTG GTTCTGGCAG 80800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATAATAAA TGGAATTATA GTGGAAATGA TTTCAACTAT TTCCCATTTG GTTCTGGCAG 466 AAGAATGTGT GCGGGGATAG CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT 80860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATGTGT GCGGGGATAG CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT 526 CATTCATTCT TTCGATTGGA AATTGCCTGA AGGAGAGACG TTAGACCTTA AAGAGAAGTT 80920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCATTCT TTCGATTGGA AATTGCCTGA AGGAGAGACG TTAGACCTTA AAGAGAAGTT 586 TTGTATTGCT TTGAAGAAGA AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTGTCCAA 80980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTATTGCT TTGAAGAAGA AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTGTCCAA 646 TCCAACACAG TATGAGTAAG ATAAAAATGT ATCACTGTTA TGTGCTAATG TCTTTCAAAG 81040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACACAG TATGAGTAAG ATAAAAATGT ATCACTGTTA TGTGCTAATG TCTTTCAAAG 706 ACAAATACTT TGAACATTGA AT 81062 |||||| || |||||||||| || ACAAATGATT TGAACATTGA AT 728 hqPGS_C08HBa0060C12.1+_SGN-E378974- (79961 80004,80379 81062) ******************************************************************************** EST sequence 85 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 78454 to 81023): Exon 1 79054 79872 ( 819 n); cDNA 1 813 ( 813 n); score: 0.875 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.875 819 1.006 C PGS_C08HBa0060C12.1+_SGN-E553649+ (79054 79872) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTTC CATGGCCCCT TCAAGAACTC 79113 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||| ||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATGTTGAGC AAAATGGTGT GTTTTTCTCC TGTTTTCTTG GGTTCTTAGC TTTACTTTGG 79173 |||||||||| || | | | | ||||||| | |||||||||| | || ||||| |||||||||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TGTTTCATCA GAAACTCAAA CAAGGGATTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 79233 | |||||||| | ||||| || ||| || || |||||||||| |||||||||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GGTAATCTCC ATTCTCTTGA TGCTTCTTCA GAAACTCACA TCTATTTTGC ATCTCTATCA 79293 |||||||||| |||||||||| | | | | ||| ||||| ||||||||| |||||| || GGTAATCTCC ATTCTCTTGA T-C--C-T-- GAACTTCACA CCTATTTTGC ATCTCTGTCC 234 CAAACTTATG GCCCCATTTG TAGACTCTGG CTTGGTCTAA AAGTTGGGAT TATTATTACT 79353 |||| ||||| |||||||||| |||| ||||| ||||||| || || ||||||| |||||||||| CAAATTTATG GCCCCATTTG TAGAATCTGG CTTGGTCAAA AACTTGGGAT TATTATTACT 294 TCCTCTGATT TAGCTCGCGA GGTTCTTAAG GATAAAGATA CCATTTTTGC AAATAGAGAA 79413 || | || | |||||||||| ||||| ||| |||||||||| |||||||| || ||||| TCACCAGAAT TAGCTCGCGA CGTTCTAAAG GATAAAGATA TTATTTTTGC TAACAGAGAC 354 GTGTCTGCTG CTGGAAGAGA ATTCTCATAT GGTGTAAATG ACTTAATTTG GAGTCCTTAT 79473 ||| |||||| ||| | ||| | | |||||| ||| |||| || || |||| || | ||||| GTGCCTGCTG CTGCAGTAGA AATTTCATAT GGTTGCAATG ACATACTTTG GAATTCTTAT 414 GGACTGAAAT GGAGAATGTT GAGGAAGGTT TGTGTTCGCG ATATGCTTAG TTCTTCTAAT 79533 |||| ||| || ||||| | ||| ||| || |||||||||| |||||||||| || ||||| | GGACCACAAT GGCGAATGAT GAGAAAGCTT TGTGTTCGCG ATATGCTTAG TTGTTCTACT 474 ATAGATTCTG TTTATGCACT AAGGAGAAGG GAGCTTAGAC GATCAATCAA TTACTTGTAT 79593 ||||||||| ||| |||||| |||| ||||| |||||||||| ||| || || |||||| ||| TTAGATTCTG TTTGTGCACT AAGGCGAAGG GAGCTTAGAC AATCGATGAA TTACTTCTAT 534 AGTCAGAGGG GTTTACCAGT GAATGTTGGT GAACAGATGT TCTTGACTGT GCTTAATGTG 79653 ||| ||| || |||||||||| ||| |||||| || ||||||| |||||||||| | |||||||| AGTAAGAAGG GTTTACCAGT GAACGTTGGT GAGCAGATGT TCTTGACTGT GTTTAATGTG 594 ATGACAAGCA TGTTATGGGG AGGCACGATG AAGGGTGAGG AAAGAGCTAC TCTTGGAGCT 79713 || ||||||| |||||||||| |||| || |||||||||| ||||||||| |||||| || ATTACAAGCA TGTTATGGGG TAGCACAGTG AAGGGTGAGG AAAGAGCTAA TCTTGGGGCA 654 GAGTTTAGGC ATGTTGTGAC TGAGATAGCT GAGTTGATCA GTATTCCCAA TCTTTCTGAT 79773 ||||||||| ||||||||| |||||| ||| | | || || |||||||||| |||||| ||| GAGTTTAGGT ATGTTGTGAG TGAGATGGCT GCGCTGTGCA GTATTCCCAA TCTTTCCGAT 714 TTTTACCCGG GCTTGGCCTG GTTTGATTTC CAGGGTGTTA TAAAGAAGAT TAAGGTGTTG 79833 || ||||| | | |||||||| |||||||||| |||||||||| ||||||||| ||| || || TTCTACCCAG GTTTGGCCTG GTTTGATTTC CAGGGTGTTA CAAAGAAGAT GAAGCTGCTG 774 CTAAAGAGAT TTGATAAGAT ATTTGAAAGC ATGATTGAT 79872 ||||||||| |||| ||||| |||||| ||| ||||||||| TTAAAGAGAT TTGAGAAGAT ATTTGATAGC ATGATTGAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (79054 79872) ******************************************************************************** EST sequence 127 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 78621 to 84181): Exon 1 79221 79712 ( 492 n); cDNA 1 486 ( 486 n); score: 0.852 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.852 492 1.012 C PGS_C08HBa0060C12.1+_SGN-E318770+ (79221 79712) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGATGCTTCT TCAGAAACTC ACATCTATTT 79280 |||||||||| |||||||||| |||||||||| ||| | | || || || ||| |||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGA-AC--C- TC--AACTTC ACACCTATTT 54 TGCATCTCTA TCACAAACTT ATGGCCCCAT TTGTAGACTC TGGCTTGGTC TAAAAGTTGG 79340 |||||||| || ||| || |||||||||| ||||||| || ||||||||| |||| |||| CGCATCTCTT TCCAAAATTT ATGGCCCCAT TTGTAGAATC TGGCTTGGTA AAAAACTTGG 114 GATTATTATT ACTTCCTCTG ATTTAGCTCG CGAGGTTCTT AAGGATAAAG ATACCATTTT 79400 ||||||| || |||||| ||| |||||||| |||||||||| |||||||||| |||||||||| GATTATTGTT ACTTCCCCTG CCTTAGCTCG CGAGGTTCTT AAGGATAAAG ATACCATTTT 174 TGCAAATAGA GAAGTGTCTG CTGCTGGAAG AGAATTCTCA TATGGTGTAA ATGACTTAAT 79460 ||| || ||| || ||| || |||||| || |||| | || ||||||| || |||| || | TGCTAACAGA GATGTGAGTG TTGCTGGTAG AGAAGTTACA TATGGTGGAA CTGACATAGT 234 TTGGAGTCCT TATGGACTGA AATGGAGAAT GTTGAGGAAG GTTTGTGTTC GCGATATGCT 79520 ||||| |||| ||||||| | | ||| | || |||||||||| |||||||||| || ||||| TTGGACTCCT TATGGACCTA AGTGGCGTAT GTTGAGGAAG GTTTGTGTTC AAGAAATGCT 294 TAGTTCTTCT AATATAGATT CTGTTTATGC ACTAAGGAGA AGGGAGCTTA GACGATCAAT 79580 || | ||||| | | ||||| || ||||||| ||| ||| || |||||||||| ||| ||| || TACTGCTTCT ACTTTAGATA CTCTTTATGC ACTGAGGCGA AGGGAGCTTA GACAATCGAT 354 CAATTACTTG TATAGTCAGA GGGGTTTACC AGTGAATGTT GGTGAACAGA TGTTCTTGAC 79640 |||||||| |||| ||||| || | || ||||||||| |||||||||| |||| ||||| TAATTACTTT TATAATCAGA CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC 414 TGTGCTTAAT GTGATGACAA GCATGTTATG GGGAGGCACG ATGAAGGGTG AGGAAAGAGC 79700 || |||||| ||||| |||| |||||||||| ||| ||||| ||||||||| |||||||||| TGCACTTAAT GTGATTACAA GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC 474 TACTCTTGGA GC 79712 ||||||||| || TACTCTTGGG GC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (79221 79712) ******************************************************************************** EST sequence 202 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 79327 to 85574): Exon 1 80703 80995 ( 293 n); cDNA 3 295 ( 293 n); score: 0.881 Intron 1 80996 81116 ( 121 n); Pd: 0.947 (s: 0.94), Pa: 0.365 (s: 0) Exon 2 81117 81130 ( 14 n); cDNA 296 308 ( 13 n); score: 0.500 Intron 2 81131 81219 ( 89 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 3 81220 81245 ( 26 n); cDNA 309 334 ( 26 n); score: 0.692 Intron 3 81246 81734 ( 489 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.54) Exon 4 81735 81780 ( 46 n); cDNA 335 380 ( 46 n); score: 0.543 Intron 4 81781 81988 ( 208 n); Pd: 0.443 (s: 0.54), Pa: 0.873 (s: 0) Exon 5 81989 82022 ( 34 n); cDNA 381 413 ( 33 n); score: 0.559 Intron 5 82023 82233 ( 211 n); Pd: 0.385 (s: 0), Pa: 0.000 (s: 0) Exon 6 82234 82270 ( 37 n); cDNA 414 446 ( 33 n); score: 0.595 Intron 6 82271 82901 ( 631 n); Pd: 0.055 (s: 0), Pa: 0.000 (s: 0.78) Exon 7 82902 83044 ( 143 n); cDNA 447 589 ( 143 n); score: 0.731 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.831 593 0.881 C PGS_C08HBa0060C12.1+_SGN-E320419+ (80703 80995,81117 81130,81220 81245,81735 81780,81989 82022,82234 82270,82902 83044) Alignment (genomic DNA sequence = upper lines): TGGAAAAATC CAACAGAGTT CTGTCCAGAG AGATTTTTGG ATAATAAATG GAATTATAGT 80762 ||| |||||| |||| ||||| | ||| || |||||| ||| | |||||||| | | | ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGAAATGATT TCAACTATTT CCCATTTGGT TCTGGCAGAA GAATGTGTGC GGGGATAGCC 80822 |||||||||| | | ||| || ||| |||||| |||||||||| |||| |||| |||| ||||| GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCA TTCATTCTTT CGATTGGAAA 80882 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| || |||||| ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 TTGCCTGAAG GAGAGACGTT AGACCTTAAA GAGAAGTTTT GTATTGCTTT GAAGAAGAAA 80942 |||||||||| ||||||| || |||| ||| | ||||||||| | | | | |||||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCCAATC CAACACAGTA TGAGTAAGAT 81002 |||||||||| |||||||||| |||||||||| || ||||||| |||||| || ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA....... 295 AAAAATGTAT CACTGTTATG TGCTAATGTC TTTCAAAGAC AAATACTTTG AACATTGAAT 81062 .......... .......... .......... .......... .......... .......... 295 AATTCTGCCA AATTTCCTAT TATAGATAAT GAGTGATATT TTCTTTTAAT TAAGACCGAA 81122 | | .......... .......... .......... .......... .......... ....GAC-AG 300 ACAATCAAGT ATCTTTCGGA AGCTAGCAAA TCAAATTCGG AAGAGAAGAT AAATAAGAAA 81182 |||| | ACAAGGTA.. .......... .......... .......... .......... .......... 308 CAGTTCAAAA CAGACATAAA TATTTAACGT GATTCGGTCA ACATGTGCAA TTTCATGTTT 81242 ||| | | ||| | ||||| | | .......... .......... .......... .......TCA AAAAGTGAAG ATTCATTTGT 331 GATGTTAAAA GCACTGTGAA TCACTTCAAT AATCAAACCA TCTTCCTGCA AAACATGGCT 81302 | | GTT....... .......... .......... .......... .......... .......... 334 TCAGAACCTC TAAAACGAGC TATGTCTTGC AGCTCTCCTA TTAATGAACA TCAAATACTC 81362 .......... .......... .......... .......... .......... .......... 334 CTATATGTTA GTATGTTTGA TAGATTATAA TAGTTATAAT GTAATAACTC TAAATATTTG 81422 .......... .......... .......... .......... .......... .......... 334 TGAAATGATA GTTTATTTTC TTTCCATAGG TACGAGATAT GAGGAATTAA TGTAGCATAT 81482 .......... .......... .......... .......... .......... .......... 334 TTTCAGAGAT ATAACATTTA GGAATAGCAG ATATTTAGAG GTGTAAAAAT CAGAATTCTT 81542 .......... .......... .......... .......... .......... .......... 334 TCTCCACTTT GAAGAATTCA TTCATCAAAC CTGACAAAGT AACAGAGCCT AGTGCTTTAA 81602 .......... .......... .......... .......... .......... .......... 334 TTCTTAGTCC TAACATTTAG GGCTCTGGGT CTTGGTTAAA TGTCATGACC CTATATAGGT 81662 .......... .......... .......... .......... .......... .......... 334 TGGAGTTTTT TTTTTGTTTT TGGGTCTATT CTAAATTTTT CTTTATCTCA AAATTCACAA 81722 .......... .......... .......... .......... .......... .......... 334 CACAACTAGT AAAAACTACA AATTAAGACA TAGTATTCAT CAAT-GATCT AATTG-TAAC 81780 |||| || || | || | | ||||| || | || | || || | | .......... ..AAACAAC- AA-GGGGCCA TTGACTTCAT CACTAAATAT AAATGTTGAA 380 GTGATAATAC TCATTTTATC TCCAAATACG AAAAAAAAGT TCTAAACTAG TTACTTGACT 81840 .......... .......... .......... .......... .......... .......... 380 ACAATATGAA GTAGTCAATA ATAGTGAACT CCTCGTAAAG GAGTTATATA TTCATATCGG 81900 .......... .......... .......... .......... .......... .......... 380 TAGATCCCTA TTCGAGAAAT ATCGATAACA GTATGCTAGT TCTATCTTTC CACTGTCAAG 81960 .......... .......... .......... .......... .......... .......... 380 AACTTTATCG GTAATCTATA ACTAAAAGGT GCATCAGGTC TAACGAACCC GCCGTTAGCT 82020 || | | | | | | | | | | | ||| || .......... .......... ........GT GGAAAATGGC TTCCCACCAC ACTGTT-TCT 411 ACGTGATTCA TCAAGGTATA CTCCCATTTA TATTTTTCTT TGTAATTAGT AGAAACAATT 82080 | GC........ .......... .......... .......... .......... .......... 413 CAAACTGGTA CAAGACATTC AAGTTCTTAT CAAAATCATG GGATATAACA CTTTAATCAA 82140 .......... .......... .......... .......... .......... .......... 413 AACATATGTC AAAATACTAT TTCTCGAGTA AATGTTAAAC TCTTTTGATA GCAGTAATCA 82200 .......... .......... .......... .......... .......... .......... 413 TATCAAGTAC CATTAATTAT ATCTTATAAA AATGAGTTCA TCCCAAATAA CTATTTTGGT 82260 | ||| || || | || || || .......... .......... .......... ...CATTTC- TCTCATTTTT CT-CTTAGG- 437 ATCATATCAA GTAAAAGACT TGTCTTATAT GTAAGTTCAA AACATTTCGG TAAATCATTC 82320 | |||| || CTGATAT-AA .......... .......... .......... .......... .......... 446 ACTTCATAAA CTATGTATAA ATCATGAAAT TTATAAAACA CAAATAATGA TAAGATTATT 82380 .......... .......... .......... .......... .......... .......... 446 ATTCACATTA CTCGTGTTGA AATAACAAAA AGAAAGGGCT TCATCCCTCT ACGCTATCAG 82440 .......... .......... .......... .......... .......... .......... 446 AAAAGAAAAA AAAATTAGCT TCTGCTTTGA TTTCCGGGGA ACGAAAGGAG AAATTTTTTG 82500 .......... .......... .......... .......... .......... .......... 446 AAAGCTTTAA TTCTTACTGA TAATTTTTTA TATATATGAT GTTTAAAATA TTGAGTTTTT 82560 .......... .......... .......... .......... .......... .......... 446 CTTGGTCAAA GAAGATGAAG GGTATATGAT TGGATATTTT AGGCCATGAA TATGCAAAAT 82620 .......... .......... .......... .......... .......... .......... 446 TTCAAATTTT GCTGACAATG AATCCAGAGA AAGAAACGAT TTTTTGCTGA AAATTGAATG 82680 .......... .......... .......... .......... .......... .......... 446 ATGAACAAAA TGCCAAATAA ACTTTGCTCC TTTTCACGTT TCATATGCTA CCAAACAAAA 82740 .......... .......... .......... .......... .......... .......... 446 TTTTGCTTCT TTCACGTTTC TTATACTACC AAACAAAGTA CTTTCTCCGT TTCAATTAAC 82800 .......... .......... .......... .......... .......... .......... 446 ATCACGAGAT TCAGGGGTAA CTCTGCTTCA TTTTGGTCTA TTTATATTCA TCTCATTCTT 82860 .......... .......... .......... .......... .......... .......... 446 TAAGCAAAAT CAGAATCTTT TAGAGGTGCA AATGCTTCAG ATGTCTCTCA AATTCTTCAA 82920 |||| || | |||||||||| .......... .......... .......... .......... .TGTCACTAA AATTCTTCAA 465 ACCCCTTTTT GAATCTTTCC CATGGCTCCT TCAACAACTC AATGCTGAGA ATAAGGCTGT 82980 ||| | | | || ||||||| |||||| | ||| ||| ||| ||||| | | | ||| ACCTTTGTGT GATTCTTTCC CATGGCCCTG GCAAGAACAA AATAGTGAGA AGAGTGGTGT 525 ATTTTTCTCC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG TGT-TTCATC AGTAACTCAA 83039 |||||||||| | | |||||| | |||||| |||| | ||| | | || | || || | ATTTTTCTCC TATGTTCTTG GCAGTTTAGC TTTAATATGG TTTCTTTGTT TTTACATC-A 584 ACAAG 83044 ||||| ACAAG 589 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (80703 80995,81117 81130,81220 81245,81735 81780,81989 82022,82234 82270,82902 83044) ******************************************************************************** EST sequence 292 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 79815 to 83069): Exon 1 80695 80953 ( 259 n); cDNA 1 260 ( 260 n); score: 0.902 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.902 259 0.715 C PGS_C08HBa0060C12.1+_SGN-E234103- (80695 80953) Alignment (genomic DNA sequence = upper lines): CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 80754 ||||||| || | |||||||| || |||||| |||||||||| ||||||||| ||||| ||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 80814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 80874 |||||| ||| |||| ||||| |||||||||| |||||||||| ||||||| | |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 80934 | |||||||| |||||||||| ||||| |||| |||| | ||| ||||||| | |||| | ||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAGAAAAT G-CCTCTGGT 80953 ||||||| || | | | |||| AGAAGAAGAT GTCTTATGGT 260 hqPGS_C08HBa0060C12.1+_SGN-E234103- (80695 80953) ******************************************************************************** EST sequence 303 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 79835 to 83069): Exon 1 80698 80953 ( 256 n); cDNA 1 258 ( 258 n); score: 0.887 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.887 256 0.711 C PGS_C08HBa0060C12.1+_SGN-E234174- (80698 80953) Alignment (genomic DNA sequence = upper lines): CTATGTGGAA AAATCCAACA GAG-TTCTGT CCAGAGAGAT TTTTGGATAA TAAATGGAAT 80756 |||| ||| | |||||| || ||| ||| || |||||||||| ||||||| || ||| ||| || CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT GTGTGCGGGG 80816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGCCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCATTCA TTCTTTCGAT 80876 |||| ||||| |||||||||| |||||||||| |||||||||| ||||| | || ||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CTGAAGGAGA GACGTTAGAC CTTAAAGAGA AGTTTTGTAT TGCTTTGAAG 80936 |||||||||| |||||||||| ||| |||| | || | ||||| ||||| | || || | ||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATG- CCTCTGGT 80953 ||||| ||| | | |||| AAGAAGATGT CTTATGGT 258 hqPGS_C08HBa0060C12.1+_SGN-E234174- (80698 80953) ******************************************************************************** EST sequence 137 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 80163 to 82087): Exon 1 80763 80995 ( 233 n); cDNA 1 233 ( 233 n); score: 0.914 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.914 233 0.879 C PGS_C08HBa0060C12.1+_SGN-E243190+ (80763 80995) Alignment (genomic DNA sequence = upper lines): GGAAATGATT TCAACTATTT CCCATTTGGT TCTGGCAGAA GAATGTGTGC GGGGATAGCC 80822 |||||||||| |||||||| | |||||||||| ||||| |||| || |||| || |||||||| | GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCA TTCATTCTTT CGATTGGAAA 80882 |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| ||| |||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCTGAAG GAGAGACGTT AGACCTTAAA GAGAAGTTTT GTATTGCTTT GAAGAAGAAA 80942 ||||| |||| |||||||||| |||||| | | ||||||||| | |||| | | |||||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCCAATC CAACACAGTA TGA 80995 |||||||||| |||||||||| |||||||||| ||||| ||| ||| || || ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (80763 80995) ******************************************************************************** EST sequence 172 +strand 780 n (File: SGN-E543331+) 1 CATAAACATG CTTAATTAGT TCTTGTTCAT CCATTTTCTT GTTTATTTGA GCCAATAATT 61 AATCAAATCA CAATTTACTA TGGAGGAAAT TTCTGAAGGA ATTCGAGCAA CTTCGTTAAG 121 GATCAATGAT TGTCCATCAC CATTACCATC CGCTATTGCT TCGTCTGCTA CTCCTCAAAA 181 ACACTTAAAA TGCTTTATCA GCGTACATTT CGTGCAAAAG GTATTTAAAT TCACAAAATT 241 CATCTTAATG ATTAAATTTG AGTCTCGAAT TTTCAAGTGT CAGATGAGCA GGTTGAGTCA 301 ATTTCGACGA GTTTTAGTTA TATAGATGGT GATGTTTGAG CTCAAACCAA AATGGAATCA 361 TTCAAGATTT TGGATCCATG AACCATTGTC TGATGATATG AATTGTATAA TTACATCATT 421 TATGTTGGAT TTTATTTTGT CCTAAATTTC TTATCATAAA TAGGTTTTTC TTTTAGGAAA 481 AAAGTTTTGA ATTGACTAAT TCTTTTTCTG GTAGGAAAAT GTTCCCGTGT ATTCTTAGTG 541 AATTGGTTGA GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTAATAGT GGATTGCTCA 601 TCTCCATTGT GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG TCTTTTGGTA 661 TATTTCTCGT TGTCTTTCAT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GCTTTCCGCG 721 TTTACCCTGC TTATTTCCGG TTCTAACAAT TTAAACGCGA AAACATTGTT ATTGTAGTTG Predicted gene structure (within gDNA segment 81957 to 90306): Exon 1 82865 82885 ( 21 n); cDNA 348 366 ( 19 n); score: 0.762 Intron 1 82886 84036 (1151 n); Pd: 0.613 (s: 0), Pa: 0.083 (s: 0) Exon 2 84037 84042 ( 6 n); cDNA 367 371 ( 5 n); score: 0.667 Intron 2 84043 84416 ( 374 n); Pd: 0.900 (s: 0), Pa: 0.926 (s: 0) Exon 3 84417 84432 ( 16 n); cDNA 372 387 ( 16 n); score: 0.625 Intron 3 84433 85016 ( 584 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 85017 85040 ( 24 n); cDNA 388 410 ( 23 n); score: 0.792 Intron 4 85041 87620 (2580 n); Pd: 0.000 (s: 0), Pa: 0.323 (s: 0) Exon 5 87621 87628 ( 8 n); cDNA 411 418 ( 8 n); score: 0.625 Intron 5 87629 87801 ( 173 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.81) Exon 6 87802 87899 ( 98 n); cDNA 419 521 ( 103 n); score: 0.770 Intron 6 87900 88036 ( 137 n); Pd: 0.319 (s: 0.73), Pa: 0.000 (s: 0.94) Exon 7 88037 88263 ( 227 n); cDNA 522 749 ( 228 n); score: 0.916 MATCH C08HBa0060C12.1+ SGN-E543331+ 0.872 400 0.513 C PGS_C08HBa0060C12.1+_SGN-E543331+ (82865 82885,84037 84042,84417 84432,85017 85040,87621 87628,87802 87899,88037 88263) Alignment (genomic DNA sequence = upper lines): CAAAATCAGA ATCTTTTAGA GGTGCAAATG CTTCAGATGT CTCTCAAATT CTTCAAACCC 82924 |||||| || ||| || | | | CAAAAT-GGA ATCATTCA-A G......... .......... .......... .......... 366 CTTTTTGAAT CTTTCCCATG GCTCCTTCAA CAACTCAATG CTGAGAATAA GGCTGTATTT 82984 .......... .......... .......... .......... .......... .......... 366 TTCTCCTGTT TTCTTGGTTT TTTAGCTTTA CTTTGGTGTT TCATCAGTAA CTCAAACAAG 83044 .......... .......... .......... .......... .......... .......... 366 GGATTGCCAC CAGGGCCTAA ACCTTTGCCC TTGATAGGTA ATCTCTATTC TCTTGATCCC 83104 .......... .......... .......... .......... .......... .......... 366 ACCTATTTTG CATCTCTTTC CCAAACTTAT GGCCCCATTT GTAGACTCTG GCTTGGTAAA 83164 .......... .......... .......... .......... .......... .......... 366 AAAGTTGGGA TTATTATTAC TTCACCTACC TTAGCTCGTG AGGTTCTTAA GGATAAAGAC 83224 .......... .......... .......... .......... .......... .......... 366 ACCATTTTTG CTAACAGAGA TGTCCCAGCT GCTGCAAAAG AATTATCATA TGGTGGCAAT 83284 .......... .......... .......... .......... .......... .......... 366 AGCATACTTT GGACTCCTTA TGGACCGAAA TGGAGAATGT TGAGGAAGGT TTGCGTTCGC 83344 .......... .......... .......... .......... .......... .......... 366 AATATGCTTA GTTATTCTAC TTTAGATTCT GTTTATGCAC TAAGGAAAAG GGAGCTTAGA 83404 .......... .......... .......... .......... .......... .......... 366 CAATCGATCA ATTACTTCTA CAGTCAGAAG GGTTTACCAG TAAATGTTGG TGAGCAGATG 83464 .......... .......... .......... .......... .......... .......... 366 TTCTTGAGTT CACTTAATGT GATTACAAGC ATGTTATGGG GTGGCACAGT GAAGGGTGAG 83524 .......... .......... .......... .......... .......... .......... 366 GAAAGAGCTA CTCTTGGAGC TGAGTTTAGG CATATTGTCA CTGAAATGGC TGCGCTGGTC 83584 .......... .......... .......... .......... .......... .......... 366 AGTATTCCCA ATTATTCCGA TTTTTACCCG GGCTTGGCCT GGTTTGATTT CCAAGGTGTT 83644 .......... .......... .......... .......... .......... .......... 366 GCAAAAAAGA TGAAGGTGTT GGCAAGGAGA TTTGATAAGA TGTTTGAGAG CATGATTGAT 83704 .......... .......... .......... .......... .......... .......... 366 CAAAGACAAA AATTGCATAG AAATGCTGAG ATGGGATATG GTGTTGGCCA AGAAAGCAAA 83764 .......... .......... .......... .......... .......... .......... 366 GACTTTTTGC AAGTTTTGCT GAAGTTGAAA GATGAAGCAG ATCCCAAAGT ACCTCTGACC 83824 .......... .......... .......... .......... .......... .......... 366 ATGACTGAAA TCAAAGCCTT ACTTATGGTA TGTTTATCAC TTGTGTATTC TACTAAATTT 83884 .......... .......... .......... .......... .......... .......... 366 GCTTTAAATA GTACATCTCC TTACCTGTTA GGTAGTTAAT GGATGAAAAA TTGGCTTATA 83944 .......... .......... .......... .......... .......... .......... 366 GTGATGTTAG TCATAATAAG AGGATCAATG CTAATACAAG TTAAAATTAG GATTGTAAAT 84004 .......... .......... .......... .......... .......... .......... 366 GTATTGAAGA ATTATTGTGT AATAAATATT AGATTCGTAT ATCCATGTCT TGAAATTGTT 84064 ||| | .......... .......... .......... ..ATT-TT.. .......... .......... 371 AGTTGCTACC ATGGTATTGG ACTGCATTAA AGAAAGAGTC GGCAAATTTA GCATCAGATT 84124 .......... .......... .......... .......... .......... .......... 371 ATATGTGAAG ACTTAACTGT GAATTAAGAT GGTGAACCTT AGGCTGAACT CTAATATACA 84184 .......... .......... .......... .......... .......... .......... 371 GTTTTACAGT TAAAAAATTG GTGTACATGA TAATAACTTC ACAAGTACTA TGGACAGGAA 84244 .......... .......... .......... .......... .......... .......... 371 ATGGTTCTCG GTGGAACTGC CACTACCGCC AACACAGTTG AGTTTGCCCT GGCTGAAATT 84304 .......... .......... .......... .......... .......... .......... 371 ATGCACAAAC CGGATATCCT GAGTAAATTA CAACAAGAAG TAGATACAGT TGTGGGAAAA 84364 .......... .......... .......... .......... .......... .......... 371 GATAATATTG TAGAAGAGTC TCATATTCAG CAATTACCAT ATCTCTATGC AGTGATGAAA 84424 ||| | .......... .......... .......... .......... .......... ..GGATCCAT 379 GAAGTATTGC GCATGCATCC AGCTACTCCG CTATTGGTGC CACATTGTCC AAGTGAAACA 84484 ||| ||| GAACCATT.. .......... .......... .......... .......... .......... 387 TGCACTGTGG GAGGATACAC TGTTCCTAAA GGATCTCGTG TTTTCATAAA TGTATGGGCT 84544 .......... .......... .......... .......... .......... .......... 387 ATACAAAGAG ATCCTTCTAT CTGGAGAAAT CCAACAGAGT TCCGTCCAGA GAGATTTTTG 84604 .......... .......... .......... .......... .......... .......... 387 GACAATAAAT GGGATTTTAG TGGAAATGAT TTCAACTATT TTCCATTTGG TTCTGGCAGA 84664 .......... .......... .......... .......... .......... .......... 387 AGAATCTGTG TGGGGATAGG CATGGCAGAG AGGATGTTCA TGTATGCACT GGCTTCGCTC 84724 .......... .......... .......... .......... .......... .......... 387 ATTCATTCTT TTGATTGGAA ATTGCCTGAA GGAGAGACAC CAGACCTTAC AGAGATGTTT 84784 .......... .......... .......... .......... .......... .......... 387 GATATTACTT TGAGGAAGAA AATTCCTCTG GTGACTATAC CTACTCCAAG ATTGTCCAAT 84844 .......... .......... .......... .......... .......... .......... 387 CCAACACTCT ATGAGTAAGA TAAAGATATA TCTGTTGAGA GTCGTCTTCT GTATGATGAT 84904 .......... .......... .......... .......... .......... .......... 387 TCTGTATTAT CTCGAATCTG TGCATTTTCT TTACTATGTA AGAAATGTCA CTTTCTTCTC 84964 .......... .......... .......... .......... .......... .......... 387 TCTCTTGTTC AATGTTTAAA CCAACTTTGG TCACTACTAT AGTATTGCTG AGGTCTGAGG 85024 |||||| | .......... .......... .......... .......... .......... ..GTCTGATG 395 AGATGAAATT GCATTAGTTT CTTTTAAACA ATGATTGCGG GTATTACTAG TCCTATTCTT 85084 | ||| |||| | || | ATATG-AATT GTATAA.... .......... .......... .......... .......... 410 AATTAATAGG AGTAAAATGA TAAACTTACT ATGTCAATTA TTATTTTCTT AATTTTTGAG 85144 .......... .......... .......... .......... .......... .......... 410 CTAAGTAAAA AATAGGCAAG TAAATTGGGA CATATCCCAT AGGGAATAGG AGAATTGGAA 85204 .......... .......... .......... .......... .......... .......... 410 GAGTCGCATC GAGCAATTAA ATGTACGGAA AAGGGTCAAA ATTACCTCTG AACTATGTAA 85264 .......... .......... .......... .......... .......... .......... 410 AATAAACCCT TATACCTTCG TTACATTTTT GTGATAAAAA AGGCTCCTGC CGTTATTCTA 85324 .......... .......... .......... .......... .......... .......... 410 ATAGACCATA AACACCCTCA AAAGTTAACA ATCTAATTTT TTTATTGATG TGAAAAGCCA 85384 .......... .......... .......... .......... .......... .......... 410 CGTGGGACTA ATCCCTCCTC CACAAGCGTT GCCAACTATA TTCACTACTT AAAAAAAATT 85444 .......... .......... .......... .......... .......... .......... 410 AAACTTTTAG CAGCGACAAA AGTCACCATA AAAGACCATA ACATTGCCAC TAAGGGTTTT 85504 .......... .......... .......... .......... .......... .......... 410 CACTGCGTTA GATTATGATT TTGTTTTTAG AAAATCGCAA AGAAATTGTT GTCAATAAGA 85564 .......... .......... .......... .......... .......... .......... 410 AGTTTGAAGA CACAATATAT TTTGTGTTTA TGTCATATGT AAATGCATAA ATTTGATCTA 85624 .......... .......... .......... .......... .......... .......... 410 TCAATTTATC TTTTTCTTTG TTTTTGCAGA AAAAACAACA ATTTGAGAGG ATGAGTATTT 85684 .......... .......... .......... .......... .......... .......... 410 TACCCTGTAT AGGCCTGAGT AATATACTAC AAAGATATTT AAATATTCAA AAGAAATGAC 85744 .......... .......... .......... .......... .......... .......... 410 CTTAAATTCC CTGCCATTTA AATTAATTAC AAAAATTTCC TTTTTCTGTC TCTCTATTAA 85804 .......... .......... .......... .......... .......... .......... 410 CTAACATGGG GATACATCTC TCTAACTCTC CCTACATCGC GCTTCACTCC CGAAAAAATC 85864 .......... .......... .......... .......... .......... .......... 410 ACGCGTTTAA CTAATTAACA ATGTATCAGC AACTTCTTCC AACTAAGCAT TTTTGAATTA 85924 .......... .......... .......... .......... .......... .......... 410 CCGTCATGTT AACTTATCAT CAATTCCAAA TTCTAGATAG AAGAATTTCT TCATCATCTT 85984 .......... .......... .......... .......... .......... .......... 410 TTTTTTCTTG TAATATATCA GAATTTTGAT AGTTTCAAAT TATTGATCGT CAACTCAATT 86044 .......... .......... .......... .......... .......... .......... 410 TAAGACCCCA ATCAGTATAA ATCATGTTTA TAATTATGTA CCGGATACAT AACTATGACA 86104 .......... .......... .......... .......... .......... .......... 410 ACCTTCATTA TATTTTAGTA CCTGATGCAT ACACCTATTG TTATTTATCT GAAAAAAAGT 86164 .......... .......... .......... .......... .......... .......... 410 TACCAAATTT TGATTCTAGT TATTTTGTTA TGTATCTGAA CTCTTTAAGT TCTAATGTAT 86224 .......... .......... .......... .......... .......... .......... 410 TTGGAGATAG TTCTATGCTG TATATACCTG ATGTCTATTT TTTCCCAATA CATCAATTTA 86284 .......... .......... .......... .......... .......... .......... 410 TAATTCAGCT GTAATTGCTG ATTTCATTTT CGTAAAAAAA AAAATATTAT CTCCAACAAT 86344 .......... .......... .......... .......... .......... .......... 410 GATTTCATCG CTTCTGTATC GTTTGTAATT TTCAGACATC CAGACTCCAA AATGTCGTTG 86404 .......... .......... .......... .......... .......... .......... 410 AGAGTTTCAT GATGAATATT CTTCTAAATT ACGAACTTCT GCAGCAAAGT TAAAAGGATT 86464 .......... .......... .......... .......... .......... .......... 410 ATGGACCATT TACTTGAACT AGTTTGAATT TTAAAATTTT GAATATATTA CGCGTTATGA 86524 .......... .......... .......... .......... .......... .......... 410 GAGATCTACC TTCTTGAATT GATATGTTAG TTTTGAATAC TAAAATTATA TAGAGTTATT 86584 .......... .......... .......... .......... .......... .......... 410 AGCACTTCTC TTGAAATTTG GAATTTTATT CTCAAATTTC ACATATCTTT AATCTTATAA 86644 .......... .......... .......... .......... .......... .......... 410 TTTCATCTCT ACACAAATAA GATAAAAATA TGTTTTATAA ATATGGTGTT AAATATTGAG 86704 .......... .......... .......... .......... .......... .......... 410 CTTTTCTTTT CAGTAAAGAA GATGAATGTA TCTGAGGACA TGATTGTCAA ACACTTCAAA 86764 .......... .......... .......... .......... .......... .......... 410 TTTTGCTGGC AACAAATCCA TAGAAAGAAA CCATTATTTT TCTGAAAATT GAATGATGAA 86824 .......... .......... .......... .......... .......... .......... 410 CGAAATGCCA AACAAATTAT GCTTTCAAGG TTTCTTATAA TACCAACAAA GTGCTTTTTC 86884 .......... .......... .......... .......... .......... .......... 410 CATTTCAATT CAGGGGTGAC TCTGCTTTGT TTTCATCCTA CTGCTCTTTC TATATTCATC 86944 .......... .......... .......... .......... .......... .......... 410 TCATTCTTTA GCAAAAAAAA AAATTAGCGG TGCAAAAGCT TCAAATGTCT CTCAAATTCT 87004 .......... .......... .......... .......... .......... .......... 410 TCAAAACCCT TTTTGATTCT TCCCCATGGC TCCTTCAACA ACTCAATGTT GACTGCTGCT 87064 .......... .......... .......... .......... .......... .......... 410 GGAATAGAAA TTTCATATGG TGGCAATAAC ATACTTTGGA ATCCTTATGG ACCGAAATGG 87124 .......... .......... .......... .......... .......... .......... 410 CGAATGTTGA GGAAGGTTTG TGTTTGCGAG ATGCTTAGTT CTTCTACTTT AGATTCTGTA 87184 .......... .......... .......... .......... .......... .......... 410 TATGCACTAA GGAGAAGGGA GGTTAGACAA TCGATCAATT ACTTTGTTGA ATCCTTGAAT 87244 .......... .......... .......... .......... .......... .......... 410 CGGACCCGTT ACAACAGAAA GAACGGGGGT CAGTTTGGGC CCTTAATTAT CTGTCAATTC 87304 .......... .......... .......... .......... .......... .......... 410 TGTATTTTGG GCCCAAGCCT TTTAGCGCGT AGCTTAGCAC TATATATAGA CGCTATGGCA 87364 .......... .......... .......... .......... .......... .......... 410 AACCCTATTC TGTAAATTCT GTTTTTTGCC TCTCCATAAT AAAACTGCTT TCCCTCTTCC 87424 .......... .......... .......... .......... .......... .......... 410 TGTGGACGTA GCCAATTTAT TGGTGAACCA CGTAAATTTG TTGTCTTGTT TTTCGCATTT 87484 .......... .......... .......... .......... .......... .......... 410 ATATTTTCTC GTATTATCTC GAATTCCGCA TAACAAATTG GTATCAGAGC CAGATTCAAT 87544 .......... .......... .......... .......... .......... .......... 410 GACGAAGTCA GGTTCAGTGG TTTGATAATC GATGATTGAA CCAGGTTAGA AAGATGTGTT 87604 .......... .......... .......... .......... .......... .......... 410 CATCTTGGCG GTGTAGTTCT AGCAGTAACC TTTTTGACAG TAATGAAGAT TTTGTTGGAG 87664 || | || .......... ......TTAC ATCA...... .......... .......... .......... 418 AAATCGTTTC AGAGAGATTC TTTGTGTTGA GACATAAATT TTGCAAAGTA GATTATGGAG 87724 .......... .......... .......... .......... .......... .......... 418 AGGAGAAGCA AGTTGTTGAA GATTAAGTCA AGAAGGTGGA CAAATTTATT TTGTCAGAAA 87784 .......... .......... .......... .......... .......... .......... 418 TTCAGGCCAA GGGGGAGATT -TGTTGGGTT TTA-TTTGCC CTAAATTTCT TACCATAAAT 87842 || |||||| || ||| |||| | |||||||||| || ||||||| .......... .......TTT ATGTTGGATT TTATTTTGTC CTAAATTTCT TATCATAAAT 461 AGGTTTTCCT TGTAGGAAAA GA-TTTTGGA TTGACTAA-T CCTTTTCTTG TAGGAAAA-G 87899 ||||||| || | |||||||| | ||||| | |||||||| | | |||||| | |||||||| | AGGTTTTTCT TTTAGGAAAA AAGTTTTGAA TTGACTAATT CTTTTTCTGG TAGGAAAATG 521 GTTTAGGACT CTATAAATAG AGGCATGTTC CTTTTAACTT AATCAACATT CACAATGTAG 87959 .......... .......... .......... .......... .......... .......... 521 TCTTAAAAGC TTTGAGAGTT TTGGTTAGAG GGAGAATCTG TGGGTCACAA GCTTGATATG 88019 .......... .......... .......... .......... .......... .......... 521 TTATCACTTG TGTGAACCTC CCATGTATTC TAAGTGAATT GGTTGAGGTT GTTTCTCTCT 88079 || || ||||||| | |||||||| |||||||||| |||||||||| .......... .......TTC CCGTGTATTC TTAGTGAATT GGTTGAGGTT GTTTCTCTCT 564 GTATTTTGTA CTCTCATATT TATAGTGGAT TGCTCATCTC CTTTGTGGAC GTAGGTCGAT 88139 |||||||||| |||||||||| ||||||||| |||||||||| | |||||||| |||||||||| GTATTTTGTA CTCTCATATT AATAGTGGAT TGCTCATCTC CATTGTGGAC GTAGGTCGAT 624 TGACCGAACC ACGTTAAATC TTTGTGTCTT TTGATATATT TCTCGTTGTC -TTCTTACTC 88198 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||| ||||| TGACCGAACC ACGTTAAATC TTTGTGTCTT TTGGTATATT TCTCGTTGTC TTTCATACTC 684 GTGGTCTTTC GAGGTTTGTA TTGCTAGC-T TCCGCGTTTA CACTTGCTTA TTTTCGGTCC 88257 ||||||||| |||||||| |||||||| | |||||||||| | | |||||| ||| |||| | GTGGTCTTTT GAGGTTTGCT TTGCTAGCTT TCCGCGTTTA C-CCTGCTTA TTTCCGGTTC 743 TAACAA 88263 |||||| TAACAA 749 hqPGS_C08HBa0060C12.1+_SGN-E543331+ (82865 82885,84037 84042,84417 84432,85017 85040,87621 87628,87802 87899,88037 88263) ******************************************************************************** EST sequence 38 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 79892 to 87322): Exon 1 83402 83851 ( 450 n); cDNA 1 435 ( 435 n); score: 0.880 Intron 1 83852 84241 ( 390 n); Pd: 0.999 (s: 0.94), Pa: 0.958 (s: 0.82) Exon 2 84242 84528 ( 287 n); cDNA 436 722 ( 287 n); score: 0.861 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.872 737 1.021 C PGS_C08HBa0060C12.1+_SGN-E378935+ (83402 83851,84242 84528) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC CAGTAAATGT TGGTGAGCAG 83461 |||| ||| | |||||||||| || |||||| | |||||||| |||| ||||| |||||| ||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 83521 |||||||||| | ||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG TCACTGAAAT GGCTGCGCTG 83581 |||||||||| |||||||||| |||||||||| |||||| ||| | ||||| || |||| | || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAAGGT 83641 ||||||||| ||||| ||| ||||||||| |||||||||| |||||||||| |||||| ||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTGCAAAAA AGATGAAGGT GTTGGCAAGG AGATTTGATA AGATGTTTGA GAGCATGATT 83701 ||| ||| | |||| ||||| |||| || | |||||||||| |||| ||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGCA TAGAAATGCT GAGATGGGAT ATGGTGTTGG CCAAGAAAGC 83761 |||||||||| ||||| | ||| | | ||| | |||||||||| |||||||||| GATCAAAGAC AAAAA-T--- TAG--A--C- -AGA----A- ATGGTGTTGG CCAAGAAAGC 345 AAAGACTTTT TGCAAGTTTT GCTGAAGTTG AAAGATGAAG CAGATCCCAA AGTACCTCTG 83821 |||||||||| |||||||||| ||| |||||| |||||||||| ||||| |||| | | |||||| AAAGACTTTT TGCAAGTTTT GCTCAAGTTG AAAGATGAAG CAGATGCCAA AATGCCTCTG 405 ACCATGACTG AAATCAAAGC CTTACTTATG GTATGTTTAT CACTTGTGTA TTCTACTAAA 83881 |||||||||| |||||||||| |||||||||| ACCATGACTG AAATCAAAGC CTTACTTATG .......... .......... .......... 435 TTTGCTTTAA ATAGTACATC TCCTTACCTG TTAGGTAGTT AATGGATGAA AAATTGGCTT 83941 .......... .......... .......... .......... .......... .......... 435 ATAGTGATGT TAGTCATAAT AAGAGGATCA ATGCTAATAC AAGTTAAAAT TAGGATTGTA 84001 .......... .......... .......... .......... .......... .......... 435 AATGTATTGA AGAATTATTG TGTAATAAAT ATTAGATTCG TATATCCATG TCTTGAAATT 84061 .......... .......... .......... .......... .......... .......... 435 GTTAGTTGCT ACCATGGTAT TGGACTGCAT TAAAGAAAGA GTCGGCAAAT TTAGCATCAG 84121 .......... .......... .......... .......... .......... .......... 435 ATTATATGTG AAGACTTAAC TGTGAATTAA GATGGTGAAC CTTAGGCTGA ACTCTAATAT 84181 .......... .......... .......... .......... .......... .......... 435 ACAGTTTTAC AGTTAAAAAA TTGGTGTACA TGATAATAAC TTCACAAGTA CTATGGACAG 84241 .......... .......... .......... .......... .......... .......... 435 GAAATGGTTC TCGGTGGAAC TGCCACTACC GCCAACACAG TTGAGTTTGC CCTGGCTGAA 84301 || ||||| |||||||||| || ||| || ||||| | | |||||||||| | |||||||| GATTTGGTTG TCGGTGGAAC TGACACAACT TCCAACGCGG TTGAGTTTGC CATGGCTGAA 495 ATTATGCACA AACCGGATAT CCTGAGTAAA TTACAACAAG AAGTAGATAC AGTTGTGGGA 84361 ||| || ||| |||| ||||| |||||| ||| ||||||||| |||||||||| |||||||||| ATTTTGAACA AACCAGATAT CCTGAGAAAA ATACAACAAG AAGTAGATAC AGTTGTGGGA 555 AAAGATAATA TTGTAGAAGA GTCTCATATT CAGCAATTAC CATATCTCTA TGCAGTGATG 84421 |||||||| | | || ||||| |||||||||| || || |||| |||||||||| |||||||||| AAAGATAACA TAGTGGAAGA GTCTCATATT CAACAGTTAC CATATCTCTA TGCAGTGATG 615 AAAGAAGTAT TGCGCATGCA TCCAGCTACT CCGCTATTGG TGCCACATTG TCCAAGTGAA 84481 ||||||| ||||||| || |||||| || || |||| || ||||| ||| ||||| AAAGAAGCCA TGCGCATACA TCCAGCCCTC CCACTCTTGG CTCCTCATTG TCCTAGTGAG 675 ACATGCACTG TGGGAGGATA CACTGTTCCT AAAGGATCTC GTGTTTT 84528 ||| ||||| | || ||||| |||||||||| ||||| |||| ||||||| ACAATCACTG TTGGTGGATA CACTGTTCCT AAAGGGTCTC GTGTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (83402 83851,84242 84528) ******************************************************************************** EST sequence 181 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 79892 to 85482): Exon 1 83402 83851 ( 450 n); cDNA 1 435 ( 435 n); score: 0.880 Intron 1 83852 84241 ( 390 n); Pd: 0.999 (s: 0.94), Pa: 0.958 (s: 0.82) Exon 2 84242 84344 ( 103 n); cDNA 436 538 ( 103 n); score: 0.854 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.875 553 1.028 C PGS_C08HBa0060C12.1+_SGN-E206806+ (83402 83851,84242 84344) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC CAGTAAATGT TGGTGAGCAG 83461 |||| ||| | |||||||||| || |||||| | |||||||| |||| ||||| |||||| ||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT GGGGTGGCAC AGTGAAGGGT 83521 |||||||||| | ||||| |||||| ||| |||||||||| |||| ||||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG TCACTGAAAT GGCTGCGCTG 83581 |||||||||| |||||||||| |||||||||| |||||| ||| | ||||| || |||| | || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAAGGT 83641 ||||||||| ||||| ||| ||||||||| |||||||||| |||||||||| |||||| ||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTGCAAAAA AGATGAAGGT GTTGGCAAGG AGATTTGATA AGATGTTTGA GAGCATGATT 83701 ||| ||| | |||| ||||| |||| || | |||||||||| |||| ||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGCA TAGAAATGCT GAGATGGGAT ATGGTGTTGG CCAAGAAAGC 83761 |||||||||| ||||| | ||| | | ||| | |||||||||| |||||||||| GATCAAAGAC AAAAA-T--- TAG--A--C- -AGA----A- ATGGTGTTGG CCAAGAAAGC 345 AAAGACTTTT TGCAAGTTTT GCTGAAGTTG AAAGATGAAG CAGATCCCAA AGTACCTCTG 83821 |||||||||| |||||||||| ||| |||||| |||||||||| ||||| |||| | | |||||| AAAGACTTTT TGCAAGTTTT GCTCAAGTTG AAAGATGAAG CAGATGCCAA AATGCCTCTG 405 ACCATGACTG AAATCAAAGC CTTACTTATG GTATGTTTAT CACTTGTGTA TTCTACTAAA 83881 |||||||||| |||||||||| |||||||||| ACCATGACTG AAATCAAAGC CTTACTTATG .......... .......... .......... 435 TTTGCTTTAA ATAGTACATC TCCTTACCTG TTAGGTAGTT AATGGATGAA AAATTGGCTT 83941 .......... .......... .......... .......... .......... .......... 435 ATAGTGATGT TAGTCATAAT AAGAGGATCA ATGCTAATAC AAGTTAAAAT TAGGATTGTA 84001 .......... .......... .......... .......... .......... .......... 435 AATGTATTGA AGAATTATTG TGTAATAAAT ATTAGATTCG TATATCCATG TCTTGAAATT 84061 .......... .......... .......... .......... .......... .......... 435 GTTAGTTGCT ACCATGGTAT TGGACTGCAT TAAAGAAAGA GTCGGCAAAT TTAGCATCAG 84121 .......... .......... .......... .......... .......... .......... 435 ATTATATGTG AAGACTTAAC TGTGAATTAA GATGGTGAAC CTTAGGCTGA ACTCTAATAT 84181 .......... .......... .......... .......... .......... .......... 435 ACAGTTTTAC AGTTAAAAAA TTGGTGTACA TGATAATAAC TTCACAAGTA CTATGGACAG 84241 .......... .......... .......... .......... .......... .......... 435 GAAATGGTTC TCGGTGGAAC TGCCACTACC GCCAACACAG TTGAGTTTGC CCTGGCTGAA 84301 || ||||| |||||||||| || ||| || ||||| | | |||||||||| | |||||||| GATTTGGTTG TCGGTGGAAC TGACACAACT TCCAACGCGG TTGAGTTTGC CATGGCTGAA 495 ATTATGCACA AACCGGATAT CCTGAGTAAA TTACAACAAG AAG 84344 ||| || ||| |||| ||||| |||||| ||| ||||||||| ||| ATTTTGAACA AACCAGATAT CCTGAGAAAA ATACAACAAG AAG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (83402 83851,84242 84344) ******************************************************************************** EST sequence 151 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 82455 to 85303): Exon 1 83435 83851 ( 417 n); cDNA 3 404 ( 402 n); score: 0.856 Intron 1 83852 84241 ( 390 n); Pd: 0.999 (s: 0.92), Pa: 0.958 (s: 0.86) Exon 2 84242 84307 ( 66 n); cDNA 405 470 ( 66 n); score: 0.864 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.857 483 1.023 C PGS_C08HBa0060C12.1+_SGN-E205363+ (83435 83851,84242 84307) Alignment (genomic DNA sequence = upper lines): GGTTTACCAG TAAATGTTGG TGAGCAGATG TTCTTGAGTT CACTTAATGT GATTACAAGC 83494 || | || | | |||||||| ||| |||||| || |||| | |||||||||| |||||||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGAGC TGAGTTTAGG 83554 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||| ||||| ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 CATATTGTCA CTGAAATGGC TGCGCTGGTC AGTATTCCCA ATTATTCCGA TTTTTACCCG 83614 || |||| | || | ||| || |||| | || ||| | || |||||| |||||||||| GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 GGCTTGGCCT GGTTTGATTT CCAAGGTGTT GCAAAAAAGA TGAAGGTGTT GGCAAGGAGA 83674 || ||||||| |||||||||| || |||||| ||| |||| |||| ||||| ||||| |||| GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TTTGATAAGA TGTTTGAGAG CATGATTGAT CAAAGACAAA AATTGCATAG AAATGCTGAG 83734 | |||||| | | |||||||| |||||||||| |||||||||| || || | || | || TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACAAA AA----AT-G -AA---T-AG 292 ATGGGATATG GTGTTGGCCA AGAAAGCAAA GACTTTTTGC AAGTTTTGCT GAAGTTGAAA 83794 | | ||| | |||||||| ||||||||| |||||||||| |||||||||| |||||||||| A----A-ATG GGGTTGGCCA AGAAAGCAAG GACTTTTTGC AAGTTTTGCT GAAGTTGAAA 347 GATGAAGCAG ATCCCAAAGT ACCTCTGACC ATGACTGAAA TCAAAGCCTT ACTTATGGTA 83854 |||||||||| |||||||| | ||||||||| ||||||||| |||||||||| ||||| | GATGAAGCAG ATCCCAAAAT GCCTCTGACC ATGACTGAAC TCAAAGCCTT ACTTACG... 404 TGTTTATCAC TTGTGTATTC TACTAAATTT GCTTTAAATA GTACATCTCC TTACCTGTTA 83914 .......... .......... .......... .......... .......... .......... 404 GGTAGTTAAT GGATGAAAAA TTGGCTTATA GTGATGTTAG TCATAATAAG AGGATCAATG 83974 .......... .......... .......... .......... .......... .......... 404 CTAATACAAG TTAAAATTAG GATTGTAAAT GTATTGAAGA ATTATTGTGT AATAAATATT 84034 .......... .......... .......... .......... .......... .......... 404 AGATTCGTAT ATCCATGTCT TGAAATTGTT AGTTGCTACC ATGGTATTGG ACTGCATTAA 84094 .......... .......... .......... .......... .......... .......... 404 AGAAAGAGTC GGCAAATTTA GCATCAGATT ATATGTGAAG ACTTAACTGT GAATTAAGAT 84154 .......... .......... .......... .......... .......... .......... 404 GGTGAACCTT AGGCTGAACT CTAATATACA GTTTTACAGT TAAAAAATTG GTGTACATGA 84214 .......... .......... .......... .......... .......... .......... 404 TAATAACTTC ACAAGTACTA TGGACAGGAA ATGGTTCTCG GTGGAACTGC CACTACCGCC 84274 || |||||| | | ||||||||| |||| ||| .......... .......... .......GAT ATGGTTGTTG GTGGAACTGA AACTAGTGCC 437 AACACAGTTG AGTTTGCCCT GGCTGAAATT ATG 84307 |||||||||| |||||||| | | |||||||| ||| AACACAGTTG AGTTTGCCAT GACTGAAATT ATG 470 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (83435 83851,84242 84307) ******************************************************************************** EST sequence 328 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 83126 to 86191): Exon 1 83808 83851 ( 44 n); cDNA 1 44 ( 44 n); score: 0.955 Intron 1 83852 84241 ( 390 n); Pd: 0.999 (s: 0.95), Pa: 0.958 (s: 0.82) Exon 2 84242 84858 ( 617 n); cDNA 45 661 ( 617 n); score: 0.888 MATCH C08HBa0060C12.1+ SGN-E378974- 0.888 661 0.908 C PGS_C08HBa0060C12.1+_SGN-E378974- (83808 83851,84242 84858) Alignment (genomic DNA sequence = upper lines): CCAAAGTACC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGTATGT TTATCACTTG 83867 ||||| | || |||||||||| |||||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 TGTATTCTAC TAAATTTGCT TTAAATAGTA CATCTCCTTA CCTGTTAGGT AGTTAATGGA 83927 .......... .......... .......... .......... .......... .......... 44 TGAAAAATTG GCTTATAGTG ATGTTAGTCA TAATAAGAGG ATCAATGCTA ATACAAGTTA 83987 .......... .......... .......... .......... .......... .......... 44 AAATTAGGAT TGTAAATGTA TTGAAGAATT ATTGTGTAAT AAATATTAGA TTCGTATATC 84047 .......... .......... .......... .......... .......... .......... 44 CATGTCTTGA AATTGTTAGT TGCTACCATG GTATTGGACT GCATTAAAGA AAGAGTCGGC 84107 .......... .......... .......... .......... .......... .......... 44 AAATTTAGCA TCAGATTATA TGTGAAGACT TAACTGTGAA TTAAGATGGT GAACCTTAGG 84167 .......... .......... .......... .......... .......... .......... 44 CTGAACTCTA ATATACAGTT TTACAGTTAA AAAATTGGTG TACATGATAA TAACTTCACA 84227 .......... .......... .......... .......... .......... .......... 44 AGTACTATGG ACAGGAAATG GTTCTCGGTG GAACTGCCAC TACCGCCAAC ACAGTTGAGT 84287 || || ||| |||||| |||||| ||| || ||||| | ||||||| .......... ....GATTTG GTTGTCGGTG GAACTGACAC AACTTCCAAC GCGGTTGAGT 90 TTGCCCTGGC TGAAATTATG CACAAACCGG ATATCCTGAG TAAATTACAA CAAGAAGTAG 84347 ||||| |||| ||||||| || ||||||| | |||||||||| ||| ||||| |||||||||| TTGCCATGGC TGAAATTTTG AACAAACCAG ATATCCTGAG AAAAATACAA CAAGAAGTAG 150 ATACAGTTGT GGGAAAAGAT AATATTGTAG AAGAGTCTCA TATTCAGCAA TTACCATATC 84407 |||||||||| |||||||||| || || || | |||||||||| |||||| || |||||||||| ATACAGTTGT GGGAAAAGAT AACATAGTGG AAGAGTCTCA TATTCAACAG TTACCATATC 210 TCTATGCAGT GATGAAAGAA GTATTGCGCA TGCATCCAGC TACTCCGCTA TTGGTGCCAC 84467 |||||||||| |||||||||| | |||||| | |||||||| || || |||| || | TCTATGCAGT GATGAAAGAA GCCATGCGCA TACATCCAGC CCTCCCACTC TTGGCTCCTC 270 ATTGTCCAAG TGAAACATGC ACTGTGGGAG GATACACTGT TCCTAAAGGA TCTCGTGTTT 84527 ||||||| || ||| ||| | ||||| || | |||||||||| ||||||||| |||||||||| ATTGTCCTAG TGAGACAATC ACTGTTGGTG GATACACTGT TCCTAAAGGG TCTCGTGTTT 330 TCATAAATGT ATGGGCTATA CAAAGAGATC CTTCTATCTG GAGAAATCCA ACAGAGTTCC 84587 | ||||||| |||||||||| || ||||||| ||||||| || || ||||||| ||||||||| TTGTAAATGT ATGGGCTATA CACAGAGATC CTTCTATGTG GAAAAATCCA ACAGAGTTCT 390 GTCCAGAGAG ATTTTTGGAC AATAAATGGG ATTTTAGTGG AAATGATTTC AACTATTTTC 84647 |||||||||| ||||||||| ||||||||| ||| |||||| |||||||||| |||||||| | GTCCAGAGAG ATTTTTGGAT AATAAATGGA ATTATAGTGG AAATGATTTC AACTATTTCC 450 CATTTGGTTC TGGCAGAAGA ATCTGTGTGG GGATAGGCAT GGCAGAGAGG ATGTTCATGT 84707 |||||||||| |||||||||| || |||| || |||||| ||| |||||||||| |||||||||| CATTTGGTTC TGGCAGAAGA ATGTGTGCGG GGATAGCCAT GGCAGAGAGG ATGTTCATGT 510 ATGCACTGGC TTCGCTCATT CATTCTTTTG ATTGGAAATT GCCTGAAGGA GAGACACCAG 84767 || ||||||| ||| |||||| |||||||| | |||||||||| |||||||||| ||||| || ATTCACTGGC TTCACTCATT CATTCTTTCG ATTGGAAATT GCCTGAAGGA GAGACGTTAG 570 ACCTTACAGA GATGTTTGAT ATTACTTTGA GGAAGAAAAT TCCTCTGGTG ACTATACCTA 84827 |||||| ||| || |||| | ||| |||||| ||||||||| ||||||||| ||||||||| ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA AGAAGAAAAT GCCTCTGGTG GCTATACCTA 630 CTCCAAGATT GTCCAATCCA ACACTCTATG A 84858 |||||||||| |||||||||| |||| |||| | CTCCAAGATT GTCCAATCCA ACACAGTATG A 661 hqPGS_C08HBa0060C12.1+_SGN-E378974- (83808 83851,84242 84858) ******************************************************************************** EST sequence 84 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 82309 to 92174): Exon 1 82901 83704 ( 804 n); cDNA 1 813 ( 813 n); score: 0.856 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.856 804 0.988 C PGS_C08HBa0060C12.1+_SGN-E553649+ (82901 83704) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GAATCTTTCC CATGGCTCCT TCAACAACTC 82960 |||||||||| |||||||||| |||||||||| || ||||||| |||||| ||| |||||||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATGCTGAGA ATAAGGCTGT ATTTTTCTCC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 83020 |||| |||| | ||||| | |||||| | |||||||||| |||||||||| |||||||||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TGTTTCATCA GTAACTCAAA CAAGGGATTG CCACCAGGGC CTAAACCTTT GCCCTTGATA 83080 | |||||||| ||||||| || ||| || || |||||||||| ||||| |||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GGTAATCTCT ATTCTCTTGA ---T---C-- C-CACCTATT TTGCATCTCT TTCCCAAACT 83131 ||||||||| |||||||||| | | | |||||||| |||||||||| ||||||| | GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 240 TATGGCCCCA TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT 83191 |||||||||| |||||||| | |||||||||| ||||| ||| |||||||||| ||||||||| TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 300 ACCTTAGCTC GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA 83251 ||||||| | || ||||| ||||||||| || | |||| |||||||||| ||| || || GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 360 GCTGCTGCAA AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG 83311 ||||||||| |||| | || ||||||| || ||| ||||| |||||| | | ||||||||| GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 420 AAATGGAGAA TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT 83371 ||||| ||| || |||| || | |||| ||| ||| |||||| |||||| ||| |||||||||| CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 480 TCTGTTTATG CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG 83431 ||||||| || |||||||| |||||||||| |||||||||| | |||||||| ||| ||| || TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 540 AAGGGTTTAC CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA 83491 |||||||||| |||| || || |||||||||| |||||||||| | |||| |||||||||| AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 600 AGCATGTTAT GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT 83551 |||||||||| ||||| |||| |||||||||| |||||||||| ||| |||||| || |||||| AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 660 AGGCATATTG TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC 83611 ||| || ||| | | ||| || |||||||||| |||||||| ||||| ||| |||||| ||| AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 720 CCGGGCTTGG CCTGGTTTGA TTTCCAAGGT GTTGCAAAAA AGATGAAGGT GTTGGCAAGG 83671 || || |||| |||||||||| |||||| ||| ||| |||| | |||||||| | | || || | CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 780 AGATTTGATA AGATGTTTGA GAGCATGATT GAT 83704 |||||||| | |||| ||||| ||||||||| ||| AGATTTGAGA AGATATTTGA TAGCATGATT GAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (82901 83704) ******************************************************************************** EST sequence 99 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 82797 to 91114): Exon 1 82907 83671 ( 765 n); cDNA 1 772 ( 772 n); score: 0.971 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.971 765 0.991 C PGS_C08HBa0060C12.1+_SGN-E554337+ (82907 83671) Alignment (genomic DNA sequence = upper lines): CTCAAATTCT -TCAAAC-C- CCTTTTTGAA TCTTTCCCAT GGCTCC-TTC AACAACTCAA 82962 |||| ||||| |||||| | |||||||||| |||||||||| |||||| ||| |||| ||||| CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 60 TGCTGAGAAT AAGGC-TGTA TTTTTCTCCT GTTTTCTTGG TTTTTTAGCT TTACTTTGGT 83021 |||||||||| || || |||| ||||||||| ||||| |||| |||||||||| |||||||||| TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 120 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 83081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 180 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 83141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 240 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 83201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 300 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 83261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 360 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 83321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 420 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 83381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 480 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 83441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 540 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 83501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 600 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 83561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 660 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CC-GGGCTTG 83620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 720 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATG-AAG GTGTTGGCAA GG 83671 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| || GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG 772 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (82907 83671) ******************************************************************************** EST sequence 53 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 83764 to 86396): Exon 1 84364 84996 ( 633 n); cDNA 1 633 ( 633 n); score: 1.000 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 1.000 633 0.889 C PGS_C08HBa0060C12.1+_SGN-E551573+ (84364 84996) Alignment (genomic DNA sequence = upper lines): AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 84423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 60 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 84483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 120 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 84543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 180 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 84603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 240 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 84663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 300 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 84723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 360 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 84783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 420 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 84843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 480 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 84903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 540 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 84963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 600 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTC 84996 |||||||||| |||||||||| |||||||||| ||| CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTC 633 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (84364 84996) ******************************************************************************** EST sequence 293 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 83741 to 87409): Exon 1 84558 84814 ( 257 n); cDNA 1 256 ( 256 n); score: 0.883 Intron 1 84815 86292 (1478 n); Pd: 0.463 (s: 0.72), Pa: 0.109 (s: 0) Exon 2 86293 86314 ( 22 n); cDNA 257 276 ( 20 n); score: 0.682 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.883 279 0.771 C PGS_C08HBa0060C12.1+_SGN-E234103- (84558 84814,86293 86314) Alignment (genomic DNA sequence = upper lines): CTTCTATCTG GAGAAATCCA ACAGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAATGGG 84617 ||||||| || | ||||||| || ||||||| |||||||||| |||||||||| ||||| |||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATTTTAGTGG AAATGATTTC AACTATTTTC CATTTGGTTC TGGCAGAAGA ATCTGTGTGG 84677 ||| |||||| |||||||||| |||||||| | |||||||||| |||||||||| ||||||| || ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGGCAT GGCAGAGAGG ATGTTCATGT ATGCACTGGC TTCGCTCATT CATTCTTTTG 84737 |||||||||| |||| ||||| |||||||||| || ||||||| ||| ||| | |||||||| | GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ATTGGAAATT GCCTGAAGGA GAGACACCAG ACCTTACAGA GATGTTTGAT ATTACTTTGA 84797 | |||||||| |||||||||| |||||| || |||| ||||| || ||||| ||| | ||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 GGAAGAAAAT TCCTCTGGTG ACTATACCTA CTCCAAGATT GTCCAATCCA ACACTCTATG 84857 |||||| || || | AGAAGAAGAT GTCT-TA... .......... .......... .......... .......... 256 AGTAAGATAA AGATATATCT GTTGAGAGTC GTCTTCTGTA TGATGATTCT GTATTATCTC 84917 .......... .......... .......... .......... .......... .......... 256 GAATCTGTGC ATTTTCTTTA CTATGTAAGA AATGTCACTT TCTTCTCTCT CTTGTTCAAT 84977 .......... .......... .......... .......... .......... .......... 256 GTTTAAACCA ACTTTGGTCA CTACTATAGT ATTGCTGAGG TCTGAGGAGA TGAAATTGCA 85037 .......... .......... .......... .......... .......... .......... 256 TTAGTTTCTT TTAAACAATG ATTGCGGGTA TTACTAGTCC TATTCTTAAT TAATAGGAGT 85097 .......... .......... .......... .......... .......... .......... 256 AAAATGATAA ACTTACTATG TCAATTATTA TTTTCTTAAT TTTTGAGCTA AGTAAAAAAT 85157 .......... .......... .......... .......... .......... .......... 256 AGGCAAGTAA ATTGGGACAT ATCCCATAGG GAATAGGAGA ATTGGAAGAG TCGCATCGAG 85217 .......... .......... .......... .......... .......... .......... 256 CAATTAAATG TACGGAAAAG GGTCAAAATT ACCTCTGAAC TATGTAAAAT AAACCCTTAT 85277 .......... .......... .......... .......... .......... .......... 256 ACCTTCGTTA CATTTTTGTG ATAAAAAAGG CTCCTGCCGT TATTCTAATA GACCATAAAC 85337 .......... .......... .......... .......... .......... .......... 256 ACCCTCAAAA GTTAACAATC TAATTTTTTT ATTGATGTGA AAAGCCACGT GGGACTAATC 85397 .......... .......... .......... .......... .......... .......... 256 CCTCCTCCAC AAGCGTTGCC AACTATATTC ACTACTTAAA AAAAATTAAA CTTTTAGCAG 85457 .......... .......... .......... .......... .......... .......... 256 CGACAAAAGT CACCATAAAA GACCATAACA TTGCCACTAA GGGTTTTCAC TGCGTTAGAT 85517 .......... .......... .......... .......... .......... .......... 256 TATGATTTTG TTTTTAGAAA ATCGCAAAGA AATTGTTGTC AATAAGAAGT TTGAAGACAC 85577 .......... .......... .......... .......... .......... .......... 256 AATATATTTT GTGTTTATGT CATATGTAAA TGCATAAATT TGATCTATCA ATTTATCTTT 85637 .......... .......... .......... .......... .......... .......... 256 TTCTTTGTTT TTGCAGAAAA AACAACAATT TGAGAGGATG AGTATTTTAC CCTGTATAGG 85697 .......... .......... .......... .......... .......... .......... 256 CCTGAGTAAT ATACTACAAA GATATTTAAA TATTCAAAAG AAATGACCTT AAATTCCCTG 85757 .......... .......... .......... .......... .......... .......... 256 CCATTTAAAT TAATTACAAA AATTTCCTTT TTCTGTCTCT CTATTAACTA ACATGGGGAT 85817 .......... .......... .......... .......... .......... .......... 256 ACATCTCTCT AACTCTCCCT ACATCGCGCT TCACTCCCGA AAAAATCACG CGTTTAACTA 85877 .......... .......... .......... .......... .......... .......... 256 ATTAACAATG TATCAGCAAC TTCTTCCAAC TAAGCATTTT TGAATTACCG TCATGTTAAC 85937 .......... .......... .......... .......... .......... .......... 256 TTATCATCAA TTCCAAATTC TAGATAGAAG AATTTCTTCA TCATCTTTTT TTTCTTGTAA 85997 .......... .......... .......... .......... .......... .......... 256 TATATCAGAA TTTTGATAGT TTCAAATTAT TGATCGTCAA CTCAATTTAA GACCCCAATC 86057 .......... .......... .......... .......... .......... .......... 256 AGTATAAATC ATGTTTATAA TTATGTACCG GATACATAAC TATGACAACC TTCATTATAT 86117 .......... .......... .......... .......... .......... .......... 256 TTTAGTACCT GATGCATACA CCTATTGTTA TTTATCTGAA AAAAAGTTAC CAAATTTTGA 86177 .......... .......... .......... .......... .......... .......... 256 TTCTAGTTAT TTTGTTATGT ATCTGAACTC TTTAAGTTCT AATGTATTTG GAGATAGTTC 86237 .......... .......... .......... .......... .......... .......... 256 TATGCTGTAT ATACCTGATG TCTATTTTTT CCCAATACAT CAATTTATAA TTCAGCTGTA 86297 ||| .......... .......... .......... .......... .......... .....TGGTA 261 ATTGCTGATT TCATTTT 86314 || ||| | | ||||| TTTAGTGA-T T-ATTTT 276 hqPGS_C08HBa0060C12.1+_SGN-E234103- (84558 84814) ******************************************************************************** EST sequence 304 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 83743 to 87409): Exon 1 84561 84814 ( 254 n); cDNA 1 254 ( 254 n); score: 0.868 Intron 1 84815 86292 (1478 n); Pd: 0.463 (s: 0.70), Pa: 0.109 (s: 0) Exon 2 86293 86314 ( 22 n); cDNA 255 274 ( 20 n); score: 0.682 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.868 276 0.767 C PGS_C08HBa0060C12.1+_SGN-E234174- (84561 84814,86293 86314) Alignment (genomic DNA sequence = upper lines): CTATCTGGAG AAATCCAACA GAG-TTCCGT CCAGAGAGAT TTTTGGACAA TAAATGGGAT 84619 |||| ||| |||||| || ||| |||||| |||||||||| |||||||||| ||| |||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TTTAGTGGAA ATGATTTCAA CTATTTTCCA TTTGGTTCTG GCAGAAGAAT CTGTGTGGGG 84679 | |||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||| |||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGGCATGG CAGAGAGGAT GTTCATGTAT GCACTGGCTT CGCTCATTCA TTCTTTTGAT 84739 |||||||||| |||||||||| |||||||||| ||||||||| | ||| | || |||||| || ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CTGAAGGAGA GACACCAGAC CTTACAGAGA TGTTTGATAT TACTTTGAGG 84799 |||||||||| |||||||||| |||| || | || ||||||| ||||| || | | ||| | TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATTC CTCTGGTGAC TATACCTACT CCAAGATTGT CCAATCCAAC ACTCTATGAG 84859 ||||| || || | AAGAAGATGT CT-TA..... .......... .......... .......... .......... 254 TAAGATAAAG ATATATCTGT TGAGAGTCGT CTTCTGTATG ATGATTCTGT ATTATCTCGA 84919 .......... .......... .......... .......... .......... .......... 254 ATCTGTGCAT TTTCTTTACT ATGTAAGAAA TGTCACTTTC TTCTCTCTCT TGTTCAATGT 84979 .......... .......... .......... .......... .......... .......... 254 TTAAACCAAC TTTGGTCACT ACTATAGTAT TGCTGAGGTC TGAGGAGATG AAATTGCATT 85039 .......... .......... .......... .......... .......... .......... 254 AGTTTCTTTT AAACAATGAT TGCGGGTATT ACTAGTCCTA TTCTTAATTA ATAGGAGTAA 85099 .......... .......... .......... .......... .......... .......... 254 AATGATAAAC TTACTATGTC AATTATTATT TTCTTAATTT TTGAGCTAAG TAAAAAATAG 85159 .......... .......... .......... .......... .......... .......... 254 GCAAGTAAAT TGGGACATAT CCCATAGGGA ATAGGAGAAT TGGAAGAGTC GCATCGAGCA 85219 .......... .......... .......... .......... .......... .......... 254 ATTAAATGTA CGGAAAAGGG TCAAAATTAC CTCTGAACTA TGTAAAATAA ACCCTTATAC 85279 .......... .......... .......... .......... .......... .......... 254 CTTCGTTACA TTTTTGTGAT AAAAAAGGCT CCTGCCGTTA TTCTAATAGA CCATAAACAC 85339 .......... .......... .......... .......... .......... .......... 254 CCTCAAAAGT TAACAATCTA ATTTTTTTAT TGATGTGAAA AGCCACGTGG GACTAATCCC 85399 .......... .......... .......... .......... .......... .......... 254 TCCTCCACAA GCGTTGCCAA CTATATTCAC TACTTAAAAA AAATTAAACT TTTAGCAGCG 85459 .......... .......... .......... .......... .......... .......... 254 ACAAAAGTCA CCATAAAAGA CCATAACATT GCCACTAAGG GTTTTCACTG CGTTAGATTA 85519 .......... .......... .......... .......... .......... .......... 254 TGATTTTGTT TTTAGAAAAT CGCAAAGAAA TTGTTGTCAA TAAGAAGTTT GAAGACACAA 85579 .......... .......... .......... .......... .......... .......... 254 TATATTTTGT GTTTATGTCA TATGTAAATG CATAAATTTG ATCTATCAAT TTATCTTTTT 85639 .......... .......... .......... .......... .......... .......... 254 CTTTGTTTTT GCAGAAAAAA CAACAATTTG AGAGGATGAG TATTTTACCC TGTATAGGCC 85699 .......... .......... .......... .......... .......... .......... 254 TGAGTAATAT ACTACAAAGA TATTTAAATA TTCAAAAGAA ATGACCTTAA ATTCCCTGCC 85759 .......... .......... .......... .......... .......... .......... 254 ATTTAAATTA ATTACAAAAA TTTCCTTTTT CTGTCTCTCT ATTAACTAAC ATGGGGATAC 85819 .......... .......... .......... .......... .......... .......... 254 ATCTCTCTAA CTCTCCCTAC ATCGCGCTTC ACTCCCGAAA AAATCACGCG TTTAACTAAT 85879 .......... .......... .......... .......... .......... .......... 254 TAACAATGTA TCAGCAACTT CTTCCAACTA AGCATTTTTG AATTACCGTC ATGTTAACTT 85939 .......... .......... .......... .......... .......... .......... 254 ATCATCAATT CCAAATTCTA GATAGAAGAA TTTCTTCATC ATCTTTTTTT TCTTGTAATA 85999 .......... .......... .......... .......... .......... .......... 254 TATCAGAATT TTGATAGTTT CAAATTATTG ATCGTCAACT CAATTTAAGA CCCCAATCAG 86059 .......... .......... .......... .......... .......... .......... 254 TATAAATCAT GTTTATAATT ATGTACCGGA TACATAACTA TGACAACCTT CATTATATTT 86119 .......... .......... .......... .......... .......... .......... 254 TAGTACCTGA TGCATACACC TATTGTTATT TATCTGAAAA AAAGTTACCA AATTTTGATT 86179 .......... .......... .......... .......... .......... .......... 254 CTAGTTATTT TGTTATGTAT CTGAACTCTT TAAGTTCTAA TGTATTTGGA GATAGTTCTA 86239 .......... .......... .......... .......... .......... .......... 254 TGCTGTATAT ACCTGATGTC TATTTTTTCC CAATACATCA ATTTATAATT CAGCTGTAAT 86299 ||| | .......... .......... .......... .......... .......... ...TGGTATT 261 TGCTGATTTC ATTTT 86314 | ||| || ||||| TAGTGA-TT- ATTTT 274 hqPGS_C08HBa0060C12.1+_SGN-E234174- (84561 84814) ******************************************************************************** EST sequence 201 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 83190 to 90589): Exon 1 84566 84900 ( 335 n); cDNA 3 337 ( 335 n); score: 0.831 Intron 1 84901 85381 ( 481 n); Pd: 0.000 (s: 0.58), Pa: 0.803 (s: 0) Exon 2 85382 85409 ( 28 n); cDNA 338 365 ( 28 n); score: 0.571 Intron 2 85410 85653 ( 244 n); Pd: 0.330 (s: 0), Pa: 0.997 (s: 0) Exon 3 85654 85659 ( 6 n); cDNA 366 371 ( 6 n); score: 0.667 Intron 3 85660 86005 ( 346 n); Pd: 0.000 (s: 0), Pa: 0.682 (s: 0.57) Exon 4 86006 86045 ( 40 n); cDNA 372 409 ( 38 n); score: 0.575 Intron 4 86046 86292 ( 247 n); Pd: 0.000 (s: 0.57), Pa: 0.109 (s: 0) Exon 5 86293 86315 ( 23 n); cDNA 410 429 ( 20 n); score: 0.652 Intron 5 86316 86897 ( 582 n); Pd: 0.227 (s: 0), Pa: 0.561 (s: 0) Exon 6 86898 86912 ( 15 n); cDNA 430 444 ( 15 n); score: 0.467 Intron 6 86913 86987 ( 75 n); Pd: 0.639 (s: 0), Pa: 0.000 (s: 0.80) Exon 7 86988 87086 ( 99 n); cDNA 445 542 ( 98 n); score: 0.667 Intron 7 87087 87608 ( 522 n); Pd: 0.723 (s: 0.52), Pa: 0.000 (s: 0) Exon 8 87609 87628 ( 20 n); cDNA 543 562 ( 20 n); score: 0.700 Intron 8 87629 88104 ( 476 n); Pd: 0.900 (s: 0), Pa: 0.931 (s: 0) Exon 9 88105 88113 ( 9 n); cDNA 563 570 ( 8 n); score: 0.778 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.794 575 0.854 C PGS_C08HBa0060C12.1+_SGN-E320419+ (84566 84900,85382 85409,85654 85659,86006 86045,86293 86315,86898 86912,86988 87086,87609 87628,88105 88113) Alignment (genomic DNA sequence = upper lines): TGGAGAAATC CAACAGAGTT CCGTCCAGAG AGATTTTTGG ACAATAAATG GGATTTTAGT 84625 ||| ||||| |||| ||||| || ||| || |||||| ||| | |||||||| ||| || ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGAAATGATT TCAACTATTT TCCATTTGGT TCTGGCAGAA GAATCTGTGT GGGGATAGGC 84685 |||||||||| | | ||| || || |||||| |||||||||| |||||||||| |||| ||| | GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTATGCACTG GCTTCGCTCA TTCATTCTTT TGATTGGAAA 84745 |||||||||| |||||||||| |||| ||||| ||||| || | |||||||||| ||| |||||| ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 TTGCCTGAAG GAGAGACACC AGACCTTACA GAGATGTTTG ATATTACTTT GAGGAAGAAA 84805 |||||||||| |||||||| |||| ||||| |||| ||||| | | | || ||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATTCCTCTGG TGACTATACC TACTCCAAGA TTGTCCAATC CAACACTCTA TGAGTAAGAT 84865 || ||||||| || ||||||| |||||||||| || ||||||| |||||||||| |||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGAGACAGAC 302 AAAG-ATATA TCTGTTGAGA GTCGTCTTCT GTATGATGAT TCTGTATTAT CTCGAATCTG 84924 || | || | || ||| || | || | || | AAGGTATCAA AAAGTGAAGA TTCAT-TTGT GTTAAA.... .......... .......... 337 TGCATTTTCT TTACTATGTA AGAAATGTCA CTTTCTTCTC TCTCTTGTTC AATGTTTAAA 84984 .......... .......... .......... .......... .......... .......... 337 CCAACTTTGG TCACTACTAT AGTATTGCTG AGGTCTGAGG AGATGAAATT GCATTAGTTT 85044 .......... .......... .......... .......... .......... .......... 337 CTTTTAAACA ATGATTGCGG GTATTACTAG TCCTATTCTT AATTAATAGG AGTAAAATGA 85104 .......... .......... .......... .......... .......... .......... 337 TAAACTTACT ATGTCAATTA TTATTTTCTT AATTTTTGAG CTAAGTAAAA AATAGGCAAG 85164 .......... .......... .......... .......... .......... .......... 337 TAAATTGGGA CATATCCCAT AGGGAATAGG AGAATTGGAA GAGTCGCATC GAGCAATTAA 85224 .......... .......... .......... .......... .......... .......... 337 ATGTACGGAA AAGGGTCAAA ATTACCTCTG AACTATGTAA AATAAACCCT TATACCTTCG 85284 .......... .......... .......... .......... .......... .......... 337 TTACATTTTT GTGATAAAAA AGGCTCCTGC CGTTATTCTA ATAGACCATA AACACCCTCA 85344 .......... .......... .......... .......... .......... .......... 337 AAAGTTAACA ATCTAATTTT TTTATTGATG TGAAAAGCCA CGTGGGACTA ATCCCTCCTC 85404 | | | ||| | | | || | .......... .......... .......... .......CAA CAAGGGGCCA TTGACTTCAT 360 CACAAGCGTT GCCAACTATA TTCACTACTT AAAAAAAATT AAACTTTTAG CAGCGACAAA 85464 ||| | CACTA..... .......... .......... .......... .......... .......... 365 AGTCACCATA AAAGACCATA ACATTGCCAC TAAGGGTTTT CACTGCGTTA GATTATGATT 85524 .......... .......... .......... .......... .......... .......... 365 TTGTTTTTAG AAAATCGCAA AGAAATTGTT GTCAATAAGA AGTTTGAAGA CACAATATAT 85584 .......... .......... .......... .......... .......... .......... 365 TTTGTGTTTA TGTCATATGT AAATGCATAA ATTTGATCTA TCAATTTATC TTTTTCTTTG 85644 .......... .......... .......... .......... .......... .......... 365 TTTTTGCAGA AAAAACAACA ATTTGAGAGG ATGAGTATTT TACCCTGTAT AGGCCTGAGT 85704 | | | | .........A ATATA..... .......... .......... .......... .......... 371 AATATACTAC AAAGATATTT AAATATTCAA AAGAAATGAC CTTAAATTCC CTGCCATTTA 85764 .......... .......... .......... .......... .......... .......... 371 AATTAATTAC AAAAATTTCC TTTTTCTGTC TCTCTATTAA CTAACATGGG GATACATCTC 85824 .......... .......... .......... .......... .......... .......... 371 TCTAACTCTC CCTACATCGC GCTTCACTCC CGAAAAAATC ACGCGTTTAA CTAATTAACA 85884 .......... .......... .......... .......... .......... .......... 371 ATGTATCAGC AACTTCTTCC AACTAAGCAT TTTTGAATTA CCGTCATGTT AACTTATCAT 85944 .......... .......... .......... .......... .......... .......... 371 CAATTCCAAA TTCTAGATAG AAGAATTTCT TCATCATCTT TTTTTTCTTG TAATATATCA 86004 .......... .......... .......... .......... .......... .......... 371 GAATTTTGAT AGTTTCAAAT TATTGATCGT CAACTCAATT TAAGACCCCA ATCAGTATAA 86064 ||| |||| ||| |||| | | | || | || | .AATGTTGA- AGTGGAAAAT GGCT-TCCCA CCACACTGTT T......... .......... 409 ATCATGTTTA TAATTATGTA CCGGATACAT AACTATGACA ACCTTCATTA TATTTTAGTA 86124 .......... .......... .......... .......... .......... .......... 409 CCTGATGCAT ACACCTATTG TTATTTATCT GAAAAAAAGT TACCAAATTT TGATTCTAGT 86184 .......... .......... .......... .......... .......... .......... 409 TATTTTGTTA TGTATCTGAA CTCTTTAAGT TCTAATGTAT TTGGAGATAG TTCTATGCTG 86244 .......... .......... .......... .......... .......... .......... 409 TATATACCTG ATGTCTATTT TTTCCCAATA CATCAATTTA TAATTCAGCT GTAATTGCTG 86304 || | ||| | .......... .......... .......... .......... ........CT GCCATT--T- 418 ATTTCATTTT CGTAAAAAAA AAAATATTAT CTCCAACAAT GATTTCATCG CTTCTGTATC 86364 | ||||||| CTCTCATTTT T......... .......... .......... .......... .......... 429 GTTTGTAATT TTCAGACATC CAGACTCCAA AATGTCGTTG AGAGTTTCAT GATGAATATT 86424 .......... .......... .......... .......... .......... .......... 429 CTTCTAAATT ACGAACTTCT GCAGCAAAGT TAAAAGGATT ATGGACCATT TACTTGAACT 86484 .......... .......... .......... .......... .......... .......... 429 AGTTTGAATT TTAAAATTTT GAATATATTA CGCGTTATGA GAGATCTACC TTCTTGAATT 86544 .......... .......... .......... .......... .......... .......... 429 GATATGTTAG TTTTGAATAC TAAAATTATA TAGAGTTATT AGCACTTCTC TTGAAATTTG 86604 .......... .......... .......... .......... .......... .......... 429 GAATTTTATT CTCAAATTTC ACATATCTTT AATCTTATAA TTTCATCTCT ACACAAATAA 86664 .......... .......... .......... .......... .......... .......... 429 GATAAAAATA TGTTTTATAA ATATGGTGTT AAATATTGAG CTTTTCTTTT CAGTAAAGAA 86724 .......... .......... .......... .......... .......... .......... 429 GATGAATGTA TCTGAGGACA TGATTGTCAA ACACTTCAAA TTTTGCTGGC AACAAATCCA 86784 .......... .......... .......... .......... .......... .......... 429 TAGAAAGAAA CCATTATTTT TCTGAAAATT GAATGATGAA CGAAATGCCA AACAAATTAT 86844 .......... .......... .......... .......... .......... .......... 429 GCTTTCAAGG TTTCTTATAA TACCAACAAA GTGCTTTTTC CATTTCAATT CAGGGGTGAC 86904 | | .......... .......... .......... .......... .......... ...CTCTTAG 436 TCTGCTTTGT TTTCATCCTA CTGCTCTTTC TATATTCATC TCATTCTTTA GCAAAAAAAA 86964 ||| | | GCTGATAT.. .......... .......... .......... .......... .......... 444 AAATTAGCGG TGCAAAAGCT TCAAATGTCT CTCAAATTCT TCAAAACCCT TTTTGATTCT 87024 |||||| || ||||||| ||||| | | | ||||||| .......... .......... ...AATGTCA CTAAAATTCT TCAAACCTTT GTGTGATTCT 481 TCCCCATGGC TCCTTCAACA ACTCAATGTT GACTGCTGCT GGAATAGAAA TTTCATATGG 87084 | |||||||| | ||| | || ||| | || | | || || | || |||| TTCCCATGGC CCTGGCAAGA ACAAAATAGT GAGAAGAG-T GGTGTATTTT TCTCCTATGT 540 TGGCAATAAC ATACTTTGGA ATCCTTATGG ACCGAAATGG CGAATGTTGA GGAAGGTTTG 87144 | TC........ .......... .......... .......... .......... .......... 542 TGTTTGCGAG ATGCTTAGTT CTTCTACTTT AGATTCTGTA TATGCACTAA GGAGAAGGGA 87204 .......... .......... .......... .......... .......... .......... 542 GGTTAGACAA TCGATCAATT ACTTTGTTGA ATCCTTGAAT CGGACCCGTT ACAACAGAAA 87264 .......... .......... .......... .......... .......... .......... 542 GAACGGGGGT CAGTTTGGGC CCTTAATTAT CTGTCAATTC TGTATTTTGG GCCCAAGCCT 87324 .......... .......... .......... .......... .......... .......... 542 TTTAGCGCGT AGCTTAGCAC TATATATAGA CGCTATGGCA AACCCTATTC TGTAAATTCT 87384 .......... .......... .......... .......... .......... .......... 542 GTTTTTTGCC TCTCCATAAT AAAACTGCTT TCCCTCTTCC TGTGGACGTA GCCAATTTAT 87444 .......... .......... .......... .......... .......... .......... 542 TGGTGAACCA CGTAAATTTG TTGTCTTGTT TTTCGCATTT ATATTTTCTC GTATTATCTC 87504 .......... .......... .......... .......... .......... .......... 542 GAATTCCGCA TAACAAATTG GTATCAGAGC CAGATTCAAT GACGAAGTCA GGTTCAGTGG 87564 .......... .......... .......... .......... .......... .......... 542 TTTGATAATC GATGATTGAA CCAGGTTAGA AAGATGTGTT CATCTTGGCG GTGTAGTTCT 87624 ||||| || ||| | | .......... .......... .......... .......... ....TTGGCA GTTTAGCTTT 558 AGCAGTAACC TTTTTGACAG TAATGAAGAT TTTGTTGGAG AAATCGTTTC AGAGAGATTC 87684 | | AATA...... .......... .......... .......... .......... .......... 562 TTTGTGTTGA GACATAAATT TTGCAAAGTA GATTATGGAG AGGAGAAGCA AGTTGTTGAA 87744 .......... .......... .......... .......... .......... .......... 562 GATTAAGTCA AGAAGGTGGA CAAATTTATT TTGTCAGAAA TTCAGGCCAA GGGGGAGATT 87804 .......... .......... .......... .......... .......... .......... 562 TGTTGGGTTT TATTTGCCCT AAATTTCTTA CCATAAATAG GTTTTCCTTG TAGGAAAAGA 87864 .......... .......... .......... .......... .......... .......... 562 TTTTGGATTG ACTAATCCTT TTCTTGTAGG AAAAGGTTTA GGACTCTATA AATAGAGGCA 87924 .......... .......... .......... .......... .......... .......... 562 TGTTCCTTTT AACTTAATCA ACATTCACAA TGTAGTCTTA AAAGCTTTGA GAGTTTTGGT 87984 .......... .......... .......... .......... .......... .......... 562 TAGAGGGAGA ATCTGTGGGT CACAAGCTTG ATATGTTATC ACTTGTGTGA ACCTCCCATG 88044 .......... .......... .......... .......... .......... .......... 562 TATTCTAAGT GAATTGGTTG AGGTTGTTTC TCTCTGTATT TTGTACTCTC ATATTTATAG 88104 .......... .......... .......... .......... .......... .......... 562 TGGATTGCT 88113 ||| || || TGG-TTTCT 570 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (84566 84900) ******************************************************************************** EST sequence 136 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 83576 to 86895): Exon 1 84626 84889 ( 264 n); cDNA 1 263 ( 263 n); score: 0.852 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.852 264 0.996 C PGS_C08HBa0060C12.1+_SGN-E243190+ (84626 84889) Alignment (genomic DNA sequence = upper lines): GGAAATGATT TCAACTATTT TCCATTTGGT TCTGGCAGAA GAATCTGTGT GGGGATAGGC 84685 |||||||||| |||||||| | ||||||||| ||||| |||| || | || | |||||||||| GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATGCACTG GCTTCGCTCA TTCATTCTTT TGATTGGAAA 84745 |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| || |||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCTGAAG GAGAGACACC AGACCTTACA GAGATGTTTG ATATTACTTT GAGGAAGAAA 84805 ||||| |||| ||||||| |||||| ||| |||| ||||| ||| | | || ||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATTCCTCTGG TGACTATACC TACTCCAAGA TTGTCCAATC CAACACTCTA TGAGTAAGAT 84865 || ||||||| || ||||||| |||||||||| ||||| ||| ||| |||||| |||||||||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 240 AAAGATATAT CTGTTGAGAG TCGT 84889 | || | |||| || | || GTA-TTAGAA ATGTTTGGAT TAGT 263 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (84626 84889) ******************************************************************************** EST sequence 363 -strand 535 n (File: SGN-E243194-) 1 TTCAGAGAGA TTCTTTGTGT TGAGACATAA ATTTTGCAAA GGAGATTATG GAGAGGAGAA 61 GCAAGTTGTT GAAGATTAAG TGAAGAAGGT GGACAAGTTT ATTTGTCAGA AATTCAGGCC 121 AAGGGGGAGA CTTGTTGGGT TTTATTTGCC CTAAATTTCT TACCATAAAT AGGTTTTCCT 181 TGTAGGAAAA GGTTTTGGAT TGACTAATCC TTTTCTTGTA GGAAAAGGTT TTGGATTGAC 241 TAATCCTTTT CTTGTAGGAA AAGGTTTAGG ACTCCATAAA TAGAGGCATT TTTCTTCTAA 301 CTTAATCAGC ATTCAAAATG TAGTCTTAAG TGCTTTGAGA GTTTTGGTTA GAGGGAGAAT 361 TTGTGGGTCA CAAGCTTGAT ACGTTATCAC TTGTGTGAAC CTCCCATGTA TTCTGAGTGA 421 ATTGGTTGAG GTTGTTTCCC TCTGTATTTT GTACTCTCAT ATTTATAGTG GATTGCTCAT 481 CTCCTTTGTG GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTATGT CTTTT Predicted gene structure (within gDNA segment 87062 to 88852): Exon 1 87672 87899 ( 228 n); cDNA 1 227 ( 227 n); score: 0.974 Intron 1 87900 88327 ( 428 n); Pd: 0.319 (s: 0.98), Pa: 0.000 (s: 0.96) Exon 2 88328 88636 ( 309 n); cDNA 228 535 ( 308 n); score: 0.951 MATCH C08HBa0060C12.1+ SGN-E243194- 0.961 537 1.004 C PGS_C08HBa0060C12.1+_SGN-E243194- (87672 87899,88328 88636) Alignment (genomic DNA sequence = upper lines): TTCAGAGAGA TTCTTTGTGT TGAGACATAA ATTTTGCAAA GTAGATTATG GAGAGGAGAA 87731 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TTCAGAGAGA TTCTTTGTGT TGAGACATAA ATTTTGCAAA GGAGATTATG GAGAGGAGAA 60 GCAAGTTGTT GAAGATTAAG TCAAGAAGGT GGACAAATTT ATTTTGTCAG AAATTCAGGC 87791 |||||||||| |||||||||| | |||||||| |||||| ||| | |||||||| |||||||||| GCAAGTTGTT GAAGATTAAG TGAAGAAGGT GGACAAGTTT A-TTTGTCAG AAATTCAGGC 119 CAAGGGGGAG ATTTGTTGGG TTTTATTTGC CCTAAATTTC TTACCATAAA TAGGTTTTCC 87851 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGGGGAG ACTTGTTGGG TTTTATTTGC CCTAAATTTC TTACCATAAA TAGGTTTTCC 179 TTGTAGGAAA AGATTTTGGA TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT 87911 |||||||||| || ||||||| |||||||||| |||||||||| |||||||| TTGTAGGAAA AGGTTTTGGA TTGACTAATC CTTTTCTTGT AGGAAAAG.. .......... 227 ATAAATAGAG GCATGTTCCT TTTAACTTAA TCAACATTCA CAATGTAGTC TTAAAAGCTT 87971 .......... .......... .......... .......... .......... .......... 227 TGAGAGTTTT GGTTAGAGGG AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG 88031 .......... .......... .......... .......... .......... .......... 227 TGAACCTCCC ATGTATTCTA AGTGAATTGG TTGAGGTTGT TTCTCTCTGT ATTTTGTACT 88091 .......... .......... .......... .......... .......... .......... 227 CTCATATTTA TAGTGGATTG CTCATCTCCT TTGTGGACGT AGGTCGATTG ACCGAACCAC 88151 .......... .......... .......... .......... .......... .......... 227 GTTAAATCTT TGTGTCTTTT GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG 88211 .......... .......... .......... .......... .......... .......... 227 GTTTGTATTG CTAGCTTCCG CGTTTACACT TGCTTATTTT CGGTCCTAAC AAGTATTTGT 88271 .......... .......... .......... .......... .......... .......... 227 TGGGTTTTAT TTGCCCTAAA TTTCTTACCA TAAATAGGTT TTCCTTGTAG GAAAAGATTT 88331 ||| .......... .......... .......... .......... .......... ......GTTT 231 TGGATTGACT AATCCTTTTC TTGTAGGAAA AGGTTTAGGA CTCTATAAAT AGAGGCATGT 88391 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| | TGGATTGACT AATCCTTTTC TTGTAGGAAA AGGTTTAGGA CTCCATAAAT AGAGGCATTT 291 TCCTTCTAAC TTAATCAACA TATCACAAAG TAGTCTTAAA AGCTTTGAGA GTTTTGGTTA 88451 | |||||||| ||||||| || | ||| || | ||||||||| ||||||||| |||||||||| TTCTTCTAAC TTAATCAGCA T-TCAAAATG TAGTCTTAAG TGCTTTGAGA GTTTTGGTTA 350 GAGGGAGAAT CTGTGGGTCA CAAGCTTGAT ATGTTATCAC TTGTGTGAAC CTCCCATGTA 88511 |||||||||| ||||||||| |||||||||| | |||||||| |||||||||| |||||||||| GAGGGAGAAT TTGTGGGTCA CAAGCTTGAT ACGTTATCAC TTGTGTGAAC CTCCCATGTA 410 TTCTGAGTGA ATTGGTTGAG GTTGTTTCTC TCTGTATTTT GTACTCTCAT ATTTATAGTG 88571 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTCTGAGTGA ATTGGTTGAG GTTGTTTCCC TCTGTATTTT GTACTCTCAT ATTTATAGTG 470 GATTGCTCAT CTCCTTTATG GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTGTGT 88631 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||| ||| GATTGCTCAT CTCCTTTGTG GACGTAGGTC GATTGACCGA ACCACGTTAA ATCTTTATGT 530 CTTTT 88636 ||||| CTTTT 535 hqPGS_C08HBa0060C12.1+_SGN-E243194- (87672 87899,88328 88636) ******************************************************************************** EST sequence 212 +strand 785 n (File: SGN-E544264+) 1 AAAAATATGG GGAGCAAGAC AATTTTGAAT GGTTTTGTGG TTTTGGTGTT TGTTGGATGG 61 CTTTTCATAT GGGTAATGTT ACCTACACCT ACTTACAAAA ATTCATGGAC TCCACATCTA 121 CTAATCAAAC TCAACTCTAC ATATTTCAGG GAACAAGGGA TAAATCTTCT TTTATTTACA 181 TTTCCCATAA TGTTGATAGC TGCTGTGAGC TGTGTTTATC TTCATCTTTA CAACAAGTCA 241 ACTTCTAATC ACAGGTTAAT CAATTACATG TTGAGTTTTA TTTGCAACCA CGTTAAATCT 301 TTGTGTCTTT GGGTATATTT CTCGTTGTCT TCTTACTCGT AGTCTTTTGA GGTTTGCTTT 361 GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGATCCTAA CATTACATAC TAATTATTAA 421 TGATCTATCT TTGATATATC TCTTTTAACT AACATACAAT TATATTGTTA GGAGTAGTAA 481 TAAAGTGCGG GAATATTTTA GACGGCCACG GCTTGTAATT GAATCTCTTG GAATTGTAAA 541 CGCGGTTGAA CTTATTTTCG CTGCGATGTT TACCGTTCTT CTTATTTGGT CTTTAGCCAA 601 CTACATCTAC ATCAGCTATG GTAATCTTCA TATGCATAAT CCCGCCGAAA AAGTTTGGAT 661 GGCGAAGTTT AGAAGTGTTG CATTGAGGCT TGGGTACATT GGGAATGTTT GTTATGCGTT 721 TTTGTTTTCC CAGTGACTCG ATTATCGTCA ATTTTGCCGC TGGTGGGGCT AACTTCTGAA 781 TCAAG Predicted gene structure (within gDNA segment 85161 to 94325): Exon 1 86006 86019 ( 14 n); cDNA 189 202 ( 14 n); score: 0.786 Intron 1 86020 86292 ( 273 n); Pd: 0.000 (s: 0), Pa: 0.109 (s: 0) Exon 2 86293 86315 ( 23 n); cDNA 203 223 ( 21 n); score: 0.696 Intron 2 86316 86947 ( 632 n); Pd: 0.227 (s: 0), Pa: 0.000 (s: 0) Exon 3 86948 86973 ( 26 n); cDNA 224 248 ( 25 n); score: 0.577 Intron 3 86974 87893 ( 920 n); Pd: 0.519 (s: 0), Pa: 0.487 (s: 0) Exon 4 87894 87921 ( 28 n); cDNA 249 275 ( 27 n); score: 0.571 Intron 4 87922 88133 ( 212 n); Pd: 0.999 (s: 0), Pa: 0.712 (s: 0.82) Exon 5 88134 88262 ( 129 n); cDNA 276 402 ( 127 n); score: 0.884 Intron 5 88263 92534 (4272 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.65) Exon 6 92535 92582 ( 48 n); cDNA 403 448 ( 46 n); score: 0.646 Intron 6 92583 93154 ( 572 n); Pd: 0.000 (s: 0.65), Pa: 0.645 (s: 0) Exon 7 93155 93173 ( 19 n); cDNA 449 466 ( 18 n); score: 0.579 Intron 7 93174 93274 ( 101 n); Pd: 0.935 (s: 0), Pa: 0.983 (s: 0) Exon 8 93275 93286 ( 12 n); cDNA 467 477 ( 11 n); score: 0.583 Intron 8 93287 93347 ( 61 n); Pd: 0.893 (s: 0), Pa: 0.441 (s: 0) Exon 9 93348 93356 ( 9 n); cDNA 478 486 ( 9 n); score: 0.667 MATCH C08HBa0060C12.1+ SGN-E544264+ 0.884 308 0.392 C PGS_C08HBa0060C12.1+_SGN-E544264+ (86006 86019,86293 86315,86948 86973,87894 87921,88134 88262,92535 92582,93155 93173,93275 93286,93348 93356) Alignment (genomic DNA sequence = upper lines): AATTTTGATA GTTTCAAATT ATTGATCGTC AACTCAATTT AAGACCCCAA TCAGTATAAA 86065 ||| |||||| | | AATGTTGATA GCTG...... .......... .......... .......... .......... 202 TCATGTTTAT AATTATGTAC CGGATACATA ACTATGACAA CCTTCATTAT ATTTTAGTAC 86125 .......... .......... .......... .......... .......... .......... 202 CTGATGCATA CACCTATTGT TATTTATCTG AAAAAAAGTT ACCAAATTTT GATTCTAGTT 86185 .......... .......... .......... .......... .......... .......... 202 ATTTTGTTAT GTATCTGAAC TCTTTAAGTT CTAATGTATT TGGAGATAGT TCTATGCTGT 86245 .......... .......... .......... .......... .......... .......... 202 ATATACCTGA TGTCTATTTT TTCCCAATAC ATCAATTTAT AATTCAGCTG TAATTGCTGA 86305 ||| | | |||| .......... .......... .......... .......... .......CTG TGA--GCTGT 213 TTTCATTTTC GTAAAAAAAA AAATATTATC TCCAACAATG ATTTCATCGC TTCTGTATCG 86365 || || ||| GTTTATCTTC .......... .......... .......... .......... .......... 223 TTTGTAATTT TCAGACATCC AGACTCCAAA ATGTCGTTGA GAGTTTCATG ATGAATATTC 86425 .......... .......... .......... .......... .......... .......... 223 TTCTAAATTA CGAACTTCTG CAGCAAAGTT AAAAGGATTA TGGACCATTT ACTTGAACTA 86485 .......... .......... .......... .......... .......... .......... 223 GTTTGAATTT TAAAATTTTG AATATATTAC GCGTTATGAG AGATCTACCT TCTTGAATTG 86545 .......... .......... .......... .......... .......... .......... 223 ATATGTTAGT TTTGAATACT AAAATTATAT AGAGTTATTA GCACTTCTCT TGAAATTTGG 86605 .......... .......... .......... .......... .......... .......... 223 AATTTTATTC TCAAATTTCA CATATCTTTA ATCTTATAAT TTCATCTCTA CACAAATAAG 86665 .......... .......... .......... .......... .......... .......... 223 ATAAAAATAT GTTTTATAAA TATGGTGTTA AATATTGAGC TTTTCTTTTC AGTAAAGAAG 86725 .......... .......... .......... .......... .......... .......... 223 ATGAATGTAT CTGAGGACAT GATTGTCAAA CACTTCAAAT TTTGCTGGCA ACAAATCCAT 86785 .......... .......... .......... .......... .......... .......... 223 AGAAAGAAAC CATTATTTTT CTGAAAATTG AATGATGAAC GAAATGCCAA ACAAATTATG 86845 .......... .......... .......... .......... .......... .......... 223 CTTTCAAGGT TTCTTATAAT ACCAACAAAG TGCTTTTTCC ATTTCAATTC AGGGGTGACT 86905 .......... .......... .......... .......... .......... .......... 223 CTGCTTTGTT TTCATCCTAC TGCTCTTTCT ATATTCATCT CATTCTTTAG CAAAAAAAAA 86965 |||||| ||| || | .......... .......... .......... .......... ..ATCTTTA- CAACAAGTCA 240 AATTAGCGGT GCAAAAGCTT CAAATGTCTC TCAAATTCTT CAAAACCCTT TTTGATTCTT 87025 | || ACTTCTAA.. .......... .......... .......... .......... .......... 248 CCCCATGGCT CCTTCAACAA CTCAATGTTG ACTGCTGCTG GAATAGAAAT TTCATATGGT 87085 .......... .......... .......... .......... .......... .......... 248 GGCAATAACA TACTTTGGAA TCCTTATGGA CCGAAATGGC GAATGTTGAG GAAGGTTTGT 87145 .......... .......... .......... .......... .......... .......... 248 GTTTGCGAGA TGCTTAGTTC TTCTACTTTA GATTCTGTAT ATGCACTAAG GAGAAGGGAG 87205 .......... .......... .......... .......... .......... .......... 248 GTTAGACAAT CGATCAATTA CTTTGTTGAA TCCTTGAATC GGACCCGTTA CAACAGAAAG 87265 .......... .......... .......... .......... .......... .......... 248 AACGGGGGTC AGTTTGGGCC CTTAATTATC TGTCAATTCT GTATTTTGGG CCCAAGCCTT 87325 .......... .......... .......... .......... .......... .......... 248 TTAGCGCGTA GCTTAGCACT ATATATAGAC GCTATGGCAA ACCCTATTCT GTAAATTCTG 87385 .......... .......... .......... .......... .......... .......... 248 TTTTTTGCCT CTCCATAATA AAACTGCTTT CCCTCTTCCT GTGGACGTAG CCAATTTATT 87445 .......... .......... .......... .......... .......... .......... 248 GGTGAACCAC GTAAATTTGT TGTCTTGTTT TTCGCATTTA TATTTTCTCG TATTATCTCG 87505 .......... .......... .......... .......... .......... .......... 248 AATTCCGCAT AACAAATTGG TATCAGAGCC AGATTCAATG ACGAAGTCAG GTTCAGTGGT 87565 .......... .......... .......... .......... .......... .......... 248 TTGATAATCG ATGATTGAAC CAGGTTAGAA AGATGTGTTC ATCTTGGCGG TGTAGTTCTA 87625 .......... .......... .......... .......... .......... .......... 248 GCAGTAACCT TTTTGACAGT AATGAAGATT TTGTTGGAGA AATCGTTTCA GAGAGATTCT 87685 .......... .......... .......... .......... .......... .......... 248 TTGTGTTGAG ACATAAATTT TGCAAAGTAG ATTATGGAGA GGAGAAGCAA GTTGTTGAAG 87745 .......... .......... .......... .......... .......... .......... 248 ATTAAGTCAA GAAGGTGGAC AAATTTATTT TGTCAGAAAT TCAGGCCAAG GGGGAGATTT 87805 .......... .......... .......... .......... .......... .......... 248 GTTGGGTTTT ATTTGCCCTA AATTTCTTAC CATAAATAGG TTTTCCTTGT AGGAAAAGAT 87865 .......... .......... .......... .......... .......... .......... 248 TTTGGATTGA CTAATCCTTT TCTTGTAGGA AAAGGTTTAG GACTCTATAA ATAGAGGCAT 87925 | ||||| | | | || | | ||| .......... .......... ........TC ACAGGTTAAT CAAT-TACAT GTTGAG.... 275 GTTCCTTTTA ACTTAATCAA CATTCACAAT GTAGTCTTAA AAGCTTTGAG AGTTTTGGTT 87985 .......... .......... .......... .......... .......... .......... 275 AGAGGGAGAA TCTGTGGGTC ACAAGCTTGA TATGTTATCA CTTGTGTGAA CCTCCCATGT 88045 .......... .......... .......... .......... .......... .......... 275 ATTCTAAGTG AATTGGTTGA GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTTATAGT 88105 .......... .......... .......... .......... .......... .......... 275 GGATTGCTCA TCTCCTTTGT GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG 88165 | ||| | |||||||||| |||||||||| .......... .......... ........TT TTATT-TGC- AACCACGTTA AATCTTTGTG 305 TCTTTTGATA TATTTCTCGT TGTCTTCTTA CTCGTGGTCT TTCGAGGTTT GTATTGCTAG 88225 ||||| | || |||||||||| |||||||||| ||||| |||| || ||||||| | ||||||| TCTTTGGGTA TATTTCTCGT TGTCTTCTTA CTCGTAGTCT TTTGAGGTTT GCTTTGCTAG 365 CTTCCGCGTT TACACTTGCT TATTTTCGGT CCTAACAAGT ATTTGTTGGG TTTTATTTGC 88285 |||||||||| ||||| |||| |||||||| | ||||||| CTTCCGCGTT TACACCTGCT TATTTTCGAT CCTAACA... .......... .......... 402 CCTAAATTTC TTACCATAAA TAGGTTTTCC TTGTAGGAAA AGATTTTGGA TTGACTAATC 88345 .......... .......... .......... .......... .......... .......... 402 CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAG GCATGTTCCT TCTAACTTAA 88405 .......... .......... .......... .......... .......... .......... 402 TCAACATATC ACAAAGTAGT CTTAAAAGCT TTGAGAGTTT TGGTTAGAGG GAGAATCTGT 88465 .......... .......... .......... .......... .......... .......... 402 GGGTCACAAG CTTGATATGT TATCACTTGT GTGAACCTCC CATGTATTCT GAGTGAATTG 88525 .......... .......... .......... .......... .......... .......... 402 GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT ATAGTGGATT GCTCATCTCC 88585 .......... .......... .......... .......... .......... .......... 402 TTTATGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT TTGTGTCTTT TGATATATTT 88645 .......... .......... .......... .......... .......... .......... 402 CTCGTTGTCT TCTTACTCGT GGTCTTTCAA GGTTTGTATT GCTAGCTTCA GCGTTTACAC 88705 .......... .......... .......... .......... .......... .......... 402 CTGTTTATTT TCGGTCCTAA CAAGTGGTAT CAGAGCCTCT CGGTTAATCG GTGTTCTTGG 88765 .......... .......... .......... .......... .......... .......... 402 AGAATTTCGA GATGTCTGCT TTGAACGTGA AAATCGACAA ATTCACAAGG AGGAACAGTT 88825 .......... .......... .......... .......... .......... .......... 402 TCAGTTTATG GAAGATCAAG ATGCGGGCTT TGTTGAAACA GCAAGGCTTC TGGGCGCCGT 88885 .......... .......... .......... .......... .......... .......... 402 TGTCGAAAGA CAAGAACGCC GTCGTTACTC CTGAGATGGC GATTCTGGAG GAAAAGGCGC 88945 .......... .......... .......... .......... .......... .......... 402 ACTCGACGAT CATGCTGTGT CTCGCGGATG ACGTCATCAC GGAGGTCTCG AATGAAGAGA 89005 .......... .......... .......... .......... .......... .......... 402 CTGCTGCTGG TCTGTGGTTG AAGCTGGAGA GTTTGTACAT GACAAAATCT CTAACCAACA 89065 .......... .......... .......... .......... .......... .......... 402 AGCTGCTTCT GAAACAACGT CTATTCGGTT TACGAATAGC TGAAGGTACA CAACTCAGGG 89125 .......... .......... .......... .......... .......... .......... 402 AACATTTAGA GCAATTGAAT ACTTTGTTAT TAGAATTGCG TAATATTGAT GTGAAGATCG 89185 .......... .......... .......... .......... .......... .......... 402 AGGATGAAGA TGCTGCCCTG ATTCTGTTAG TATCTCTCCC AATGTCGTTT GAGAATTTTG 89245 .......... .......... .......... .......... .......... .......... 402 TTCAATCGTT CATTGTTGGG AAAGATACTG TGTCGCTGGA AGAAGTCAGA TCGGCCCTTC 89305 .......... .......... .......... .......... .......... .......... 402 ATAGCAGGGA ATTACGGCAT AAGGCTAACG GCACAAGTAC GGACATACAG CCTTCCGGTC 89365 .......... .......... .......... .......... .......... .......... 402 TGTTCACCAG TAGCGGAAAG GGAAGGAAAA ACGGCAGAAA GAAAAAATAA GCCGATGTCA 89425 .......... .......... .......... .......... .......... .......... 402 AAGGGTGCAA AGCCGGATGA TGTTTGTAAT TACTGCAAGG AGAAGGGACA TTTGAAATTT 89485 .......... .......... .......... .......... .......... .......... 402 GATTGTCCGA AGAAGAAGAA GCAATCAGAA AAACAATCAG TTTCTGCTGC TGTTGCTGAA 89545 .......... .......... .......... .......... .......... .......... 402 GAAGACACCA ATTCTGAAGA AGACATTGCC CTAGTTGCGG ATGAGCACAC TCATTATTCA 89605 .......... .......... .......... .......... .......... .......... 402 GATGTGTGGG TTCTCGATTC TGGGGCATCC TATCACATTT GTCCTAAGAG AGAGTGGTTC 89665 .......... .......... .......... .......... .......... .......... 402 ACGACTTATG AGCAGGTAAA CGGAGGCAGC ATCTCGATGG CCAACAGTTC TGTCTGCAAG 89725 .......... .......... .......... .......... .......... .......... 402 GTGGTTGGGA CAGGCTCGAT CAAGATAAGG ACACATGACG GTAGCTTCTG CACATTGAAC 89785 .......... .......... .......... .......... .......... .......... 402 GAGGTCAGGC ACGTTCCATT GATGACGAAA AATCTGATAT CTCTCAGTCT TTTGGACAGC 89845 .......... .......... .......... .......... .......... .......... 402 AAGGGATTCA GTTGGTCGGG AAAAGATGGA GTCTTACGGG TTTGGAAGGG TTCAAATCTG 89905 .......... .......... .......... .......... .......... .......... 402 ATTCTGAAAG GTGTCATGCG TGGTACTTTG TATTTTCTAC AAGGTTCCAC GGTTACAGGT 89965 .......... .......... .......... .......... .......... .......... 402 TCAGCCTATG TTGCATCGTC AAAAGTTCAC CAGAAGGATA TGACTAAGTT ATGGCACATG 90025 .......... .......... .......... .......... .......... .......... 402 AGACTTGGTC ATATGGGTGA AAGAGGGATG CAAATTTTGT CAAAGGAGGA TCTTCTTGCT 90085 .......... .......... .......... .......... .......... .......... 402 GGTCATAAGG TTAAGAGCCT AGAGTTTTGT GAACATTGTG TCTTTGGAAA ACTACATCGC 90145 .......... .......... .......... .......... .......... .......... 402 AACAAGTTTC CAAAGGCCAT TCATAGAACA AAAGGCACAC TTGATTATAT TCATTCTGAT 90205 .......... .......... .......... .......... .......... .......... 402 TGCTGGGGTC CATGCCGTGT TGAGTCTTTG GGAGGCTGCA GATTTTTTGT GTCCATTATT 90265 .......... .......... .......... .......... .......... .......... 402 GATGACTACT CAAGGATGAC TTGGGTGTAC ATGAAGAAGC ATAAAAGTGA AGCTTTTCAG 90325 .......... .......... .......... .......... .......... .......... 402 AAGTTCAAGG AGTGGAAAAT TTTGATGGAA AATCAAACAG GGAAGAAGAT CAAGAGGTTG 90385 .......... .......... .......... .......... .......... .......... 402 CGAACTGATA ATGGGCTGGA ATTCTGCTGG TCTAAATTTG ATCAATTCTG TAAGGGTGAA 90445 .......... .......... .......... .......... .......... .......... 402 GGGAATGCTC AACATCAGAA GCTGTTAATT GCCCTGCGGG GCAATTCTGA GGAAGAGGGG 90505 .......... .......... .......... .......... .......... .......... 402 AGGCGTGGCA CTATCATAGT GCGTCTGAAG AATCTGTTTG GAGAATTCAA GTCAAGGTGG 90565 .......... .......... .......... .......... .......... .......... 402 AGATTTGTTG AATGCCTTGA ATCGGACCTG TTACAACAGA AAGAACGGGG GTCAGTTTGG 90625 .......... .......... .......... .......... .......... .......... 402 GCCCTTAATT ATCTGTCAAT TCTGTATTTT GGGCCCAAGC CTTTTAGGGC GTAGCTTAGC 90685 .......... .......... .......... .......... .......... .......... 402 ACTATATATA GATGTTATGG CAAACCCTAT TCTGTAATTC TGTTTTTTGC CTCTCCATAA 90745 .......... .......... .......... .......... .......... .......... 402 TAAAACTGCT CCCCCTCTTC CTGTGGACGT AGCCAATTTA TTGGTGAACC ACGTAAATCT 90805 .......... .......... .......... .......... .......... .......... 402 GTTGTCTTGT TTTTCGCATT TATATTTTCT CGTATTATCT CGAATTCCTC ATAACATACT 90865 .......... .......... .......... .......... .......... .......... 402 TGTATAGTCA GAAGGGTTTA CCAATGAATG TTAGTGAACA GACGTTTTTG ACTATTCTTA 90925 .......... .......... .......... .......... .......... .......... 402 ATGTGATGAC AAGCATGTTA TGGGGTGGCA CAGTGAAGGG TGAGGAAAGA GCTAGCGTTG 90985 .......... .......... .......... .......... .......... .......... 402 GAGCTGAGTT TAGGCATGTT GTGACTGGGA TAGCTCAGTT GGTCAGTATT CCCAATCTTA 91045 .......... .......... .......... .......... .......... .......... 402 CCGATTTTTA CCCGGGCTTG GCCTGGTTTG ATTTCCAAGG TATTACAAAG AAGATGAAGG 91105 .......... .......... .......... .......... .......... .......... 402 TGTTGGCAAA GAGATTTGAT AAGATATTTG AGGGAATAAT TGATCAAAGA CAAAAATTGG 91165 .......... .......... .......... .......... .......... .......... 402 ACAGAAATGG TGTTGGCCAA GATAGCAAAG ACTTTTTTGC AAGTTTTGTT AAAGTTGAAA 91225 .......... .......... .......... .......... .......... .......... 402 GATGAAGCAG ATCCCAAAAT ACCTCTGACC ATGACTGACA TCAAAGCCTT ACTTATGGTA 91285 .......... .......... .......... .......... .......... .......... 402 TGTTTTATCA GTTGTTCATT CTACTAAATT TTCTTTTTCC AGAAATTGGC ATATAGTGAT 91345 .......... .......... .......... .......... .......... .......... 402 ATAAGTCATA ATAAGATGAT TGTAAATGTA TTGAAGAATT ATTGTTAGTA ATAAATATAT 91405 .......... .......... .......... .......... .......... .......... 402 TCATGTCCTG AACTGTTAGT AGTTACCATG TTATTGGACT GCATTAAAGA AAGAGTCGGC 91465 .......... .......... .......... .......... .......... .......... 402 AAATTTAGCA TCAGATTATA TGTGAAGACT TAACTGTGAA TTAAGACTCT GAACTTTGAA 91525 .......... .......... .......... .......... .......... .......... 402 CTGAACTCCA ATATACAGTT TTACAGTTAA AAAATTGTTG AATATGATAA TAACTTCACA 91585 .......... .......... .......... .......... .......... .......... 402 TCTACTATGG ACAGGAAATG GTTCTCGGTG GAACTGGCTC AACCTCCAAT ACGATTGAGT 91645 .......... .......... .......... .......... .......... .......... 402 TTGCCATGGC TGAAATTATG AACAAACCAG ATGTCCTGAG AAAATTACAA CAAGAAGTAG 91705 .......... .......... .......... .......... .......... .......... 402 ATACAGTTGT GGGAAAAGAT AATATTGTAG AAGAGTCTCA TATTCAGCAA TTACCATGTA 91765 .......... .......... .......... .......... .......... .......... 402 TCTATGCAGT GATGAAAGAA GTATTGCGCA TGCATCCAGC TACTCCACTA TTGGTGCCAC 91825 .......... .......... .......... .......... .......... .......... 402 ATTGTCCAAG TGAGACAGTC ACTGTTGGAG GATACACTGT TCCTGAAGGA TCTCGTGTTT 91885 .......... .......... .......... .......... .......... .......... 402 TCATAAATGT TTGGGCTATA CAGAGAGATA CTTCTATCTG GAAAAGTCCA ACAGAGTTCT 91945 .......... .......... .......... .......... .......... .......... 402 GTCCAGAGAG ATTTTTGGAA AATAAATGGG ACTATAGTGA AAATGATTTC AACTATTTCC 92005 .......... .......... .......... .......... .......... .......... 402 CATTTGGTTC TGGAAGAAGA ATCTGTGCGG GGATAGCCAT GGCAGACAGG ATGTTCACGT 92065 .......... .......... .......... .......... .......... .......... 402 ATTCACTGGC TTCGATCATT CATTCTTTCG ACTGGAAATT GCCCCAAGGA GAAACATTGG 92125 .......... .......... .......... .......... .......... .......... 402 ACGTTACGGA GAAGTTCAGT AGTATTTTGA AGAAGAAAAT ACCTCTGGTG GCTTTACCTA 92185 .......... .......... .......... .......... .......... .......... 402 CTCCAAGATA GTCCAATTCA ACACTGTATG AGTAAGATAA AAATGTGTTA GTAGAGAGCC 92245 .......... .......... .......... .......... .......... .......... 402 GTGTTCTGTA TGATGATTTT ATCTTTTGTA TTATGAATTA TAAAAACGGG ATCCACTATA 92305 .......... .......... .......... .......... .......... .......... 402 TAAATAAAGA TATAAAATAT CGAGAGAAAT AACCTCACAA AATTAGCTCA ACTTAAAAAG 92365 .......... .......... .......... .......... .......... .......... 402 AGGCTCACAC TAGTGATAAA GTACCACTTG TGTCTCACAA AAATCTCTCC CTAAATAAAA 92425 .......... .......... .......... .......... .......... .......... 402 CTCTCAGAGC CCTTAGGATT ATATTGTAAA TTCTACCAAG TTAGAAGTAA TGAGCCTCTT 92485 .......... .......... .......... .......... .......... .......... 402 TTTATAGAAC TAGCTTTGAG AACGTGCTTT GCATGTTTAT TCCAAAAACT TAAATTGTAA 92545 | || || ||| .......... .......... .......... .......... .........T TACATACTAA 413 ATATAAATTT TATATAGTAT ATTATATCAC TTTCTTTGTG CTGTGGACTA AAAATGATAA 92605 ||| ||| | ||| | | |||||| | ||| | TTATTAATGA TCTATCTTTG A-TATATCTC TTT-TAA... .......... .......... 448 CGTATAAAAA GAACAAAAAC TAAGTTATAG AGTCATTTTA GTCTAGCAAT GCTTACCTTA 92665 .......... .......... .......... .......... .......... .......... 448 ACATATATAC TTAATTGGTT GTAACTCAAC TATATCAAGA TCTCTTGAAA CTTATCAGTT 92725 .......... .......... .......... .......... .......... .......... 448 ATCTTACAAC AACATATATA CAAAGATTTT ATGATGATGC TAAAATTTTG TACGAAGTTA 92785 .......... .......... .......... .......... .......... .......... 448 CCTAACATAT CATTGATTTG GTCCTCTAAG TTTTTAAAGT TACAAGAGTG ACATTTATGA 92845 .......... .......... .......... .......... .......... .......... 448 CATAGTTTTT ATCCATAATA TCATAATCAA CTAGATAATT AACTGATCAC TGTGTTACGA 92905 .......... .......... .......... .......... .......... .......... 448 AGACCATGAG TCCATGACTT TTTTGGGATC ACTGATTAGC TAGAGTCATT ATAGCATCCA 92965 .......... .......... .......... .......... .......... .......... 448 ATAAGAAGTA TATTTAACAA CAACTATTAA TTTTATAGTA TGTACATAAC TTTCTGAGAT 93025 .......... .......... .......... .......... .......... .......... 448 GAGGAAGTTT GAGCAAAAAA AAAATTTAAG CAATTTCACG CTTGATGTTA AAAGCAGTGT 93085 .......... .......... .......... .......... .......... .......... 448 GAATCACTTC AATAATTAAA CTGTCTTCCT GCAAAACATG GCTTCAAACT TCTAAAACAT 93145 .......... .......... .......... .......... .......... .......... 448 GTCTTGCAGC TCTCCTGACA GTTCAATGGT ACAAATAAAT GAACATCAAA TTCTCCAATA 93205 | | | | ||| || || .........C TAACAT-ACA ATTATATT.. .......... .......... .......... 466 CGTTAGCATG TTTGATAGAT TCTAATAGTT AAATAATGAA ATAACTCTAA ATATTTGTGC 93265 .......... .......... .......... .......... .......... .......... 466 AATGATCAGA GGCGGAGCTA GGTGAGCGTT TGTGTGTTTG GACGAATTCA CTAGCTATTT 93325 |||| || | .........G TTAGGAG-TA G......... .......... .......... .......... 477 TGTGTATCCT GTAATAGCTC AGTGGTAATG T 93356 | ||| | | .......... .......... ..TAATAAAG T 486 hqPGS_C08HBa0060C12.1+_SGN-E544264+ (87894 87921,88134 88262) ******************************************************************************** EST sequence 345 -strand 595 n (File: SGN-E271645-) 1 CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 61 ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AAGTTTGCTT 181 TGCTAGCTTC CGCATTTACA CCTGCTTATT TCGATCCTAA CAAGTGGGTA TTAGAGCCAT 241 TTAATGACAG AGGTCAGGTT CAGTGGTTCG ATAATCGATT ATTGGACCAG GTTAGAAAGA 301 GGGTGGTGGT TCATCTTGAC AGGTGGTAGG TTCTAGCCGC AATCTTTTTG ACAGTAATGA 361 AGATTTTGTT GGAGAAATTG TTTCAGAGAG GTTTTCTATG GTTGAGACAT AAATTTTACA 421 AAGGAGATTA AGAAGAAGAG AAGCAAGTTG TTGAAGATTA AATGAAGAAT GTGGAGAAAT 481 TTATTTTGGT CAGAAATACA GGCCAAGGGG GAGGAGATTT GTTGGATTTT ATTTACCATA 541 ATTTCTTAAC ATAAATAGGT TTTCCTTTTA GGGAAAAATT TTGGATTGAC TAATC Predicted gene structure (within gDNA segment 87662 to 94133): Exon 1 88041 88211 ( 171 n); cDNA 1 172 ( 172 n); score: 0.933 Intron 1 88212 88676 ( 465 n); Pd: 0.917 (s: 0.91), Pa: 0.550 (s: 0.86) Exon 2 88677 88745 ( 69 n); cDNA 173 241 ( 69 n); score: 0.819 Intron 2 88746 91774 (3029 n); Pd: 0.000 (s: 0.81), Pa: 0.945 (s: 0) Exon 3 91775 91787 ( 13 n); cDNA 242 254 ( 13 n); score: 0.769 Intron 3 91788 92928 (1141 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.59) Exon 4 92929 92972 ( 44 n); cDNA 255 297 ( 43 n); score: 0.591 Intron 4 92973 93274 ( 302 n); Pd: 0.738 (s: 0.59), Pa: 0.983 (s: 0) Exon 5 93275 93280 ( 6 n); cDNA 298 303 ( 6 n); score: 0.667 MATCH C08HBa0060C12.1+ SGN-E271645- 0.900 303 0.509 C PGS_C08HBa0060C12.1+_SGN-E271645- (88041 88211,88677 88745,91775 91787,92929 92972,93275 93280) Alignment (genomic DNA sequence = upper lines): CATGTATTCT AAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 88100 ||| ||||| | ||||||| ||||| |||| |||||||||| ||| |||||| |||||||||| CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 60 ATAGTGGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 88160 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 120 TT-GTGTCTT TTGATATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AGGTTTGTAT 88219 || ||||||| ||| |||||| |||||||||| |||||||||| |||||||||| | TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AA........ 172 TGCTAGCTTC CGCGTTTACA CTTGCTTATT TTCGGTCCTA ACAAGTATTT GTTGGGTTTT 88279 .......... .......... .......... .......... .......... .......... 172 ATTTGCCCTA AATTTCTTAC CATAAATAGG TTTTCCTTGT AGGAAAAGAT TTTGGATTGA 88339 .......... .......... .......... .......... .......... .......... 172 CTAATCCTTT TCTTGTAGGA AAAGGTTTAG GACTCTATAA ATAGAGGCAT GTTCCTTCTA 88399 .......... .......... .......... .......... .......... .......... 172 ACTTAATCAA CATATCACAA AGTAGTCTTA AAAGCTTTGA GAGTTTTGGT TAGAGGGAGA 88459 .......... .......... .......... .......... .......... .......... 172 ATCTGTGGGT CACAAGCTTG ATATGTTATC ACTTGTGTGA ACCTCCCATG TATTCTGAGT 88519 .......... .......... .......... .......... .......... .......... 172 GAATTGGTTG AGGTTGTTTC TCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 88579 .......... .......... .......... .......... .......... .......... 172 ATCTCCTTTA TGGACGTAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGAT 88639 .......... .......... .......... .......... .......... .......... 172 ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCAAGGTT TGTATTGCTA GCTTCAGCGT 88699 ||| || |||||| ||||| || | .......... .......... .......... .......GTT TGCTTTGCTA GCTTCCGCAT 195 TTACACCTGT TTATTTTCGG TCCTAACAAG T-GGTATCAG AGCCTCTCGG TTAATCGGTG 88758 ||||||||| ||| ||||| |||||||||| | ||||| || |||| | TTACACCTGC TTA-TTTCGA TCCTAACAAG TGGGTATTAG AGCCATT... .......... 241 TTCTTGGAGA ATTTCGAGAT GTCTGCTTTG AACGTGAAAA TCGACAAATT CACAAGGAGG 88818 .......... .......... .......... .......... .......... .......... 241 AACAGTTTCA GTTTATGGAA GATCAAGATG CGGGCTTTGT TGAAACAGCA AGGCTTCTGG 88878 .......... .......... .......... .......... .......... .......... 241 GCGCCGTTGT CGAAAGACAA GAACGCCGTC GTTACTCCTG AGATGGCGAT TCTGGAGGAA 88938 .......... .......... .......... .......... .......... .......... 241 AAGGCGCACT CGACGATCAT GCTGTGTCTC GCGGATGACG TCATCACGGA GGTCTCGAAT 88998 .......... .......... .......... .......... .......... .......... 241 GAAGAGACTG CTGCTGGTCT GTGGTTGAAG CTGGAGAGTT TGTACATGAC AAAATCTCTA 89058 .......... .......... .......... .......... .......... .......... 241 ACCAACAAGC TGCTTCTGAA ACAACGTCTA TTCGGTTTAC GAATAGCTGA AGGTACACAA 89118 .......... .......... .......... .......... .......... .......... 241 CTCAGGGAAC ATTTAGAGCA ATTGAATACT TTGTTATTAG AATTGCGTAA TATTGATGTG 89178 .......... .......... .......... .......... .......... .......... 241 AAGATCGAGG ATGAAGATGC TGCCCTGATT CTGTTAGTAT CTCTCCCAAT GTCGTTTGAG 89238 .......... .......... .......... .......... .......... .......... 241 AATTTTGTTC AATCGTTCAT TGTTGGGAAA GATACTGTGT CGCTGGAAGA AGTCAGATCG 89298 .......... .......... .......... .......... .......... .......... 241 GCCCTTCATA GCAGGGAATT ACGGCATAAG GCTAACGGCA CAAGTACGGA CATACAGCCT 89358 .......... .......... .......... .......... .......... .......... 241 TCCGGTCTGT TCACCAGTAG CGGAAAGGGA AGGAAAAACG GCAGAAAGAA AAAATAAGCC 89418 .......... .......... .......... .......... .......... .......... 241 GATGTCAAAG GGTGCAAAGC CGGATGATGT TTGTAATTAC TGCAAGGAGA AGGGACATTT 89478 .......... .......... .......... .......... .......... .......... 241 GAAATTTGAT TGTCCGAAGA AGAAGAAGCA ATCAGAAAAA CAATCAGTTT CTGCTGCTGT 89538 .......... .......... .......... .......... .......... .......... 241 TGCTGAAGAA GACACCAATT CTGAAGAAGA CATTGCCCTA GTTGCGGATG AGCACACTCA 89598 .......... .......... .......... .......... .......... .......... 241 TTATTCAGAT GTGTGGGTTC TCGATTCTGG GGCATCCTAT CACATTTGTC CTAAGAGAGA 89658 .......... .......... .......... .......... .......... .......... 241 GTGGTTCACG ACTTATGAGC AGGTAAACGG AGGCAGCATC TCGATGGCCA ACAGTTCTGT 89718 .......... .......... .......... .......... .......... .......... 241 CTGCAAGGTG GTTGGGACAG GCTCGATCAA GATAAGGACA CATGACGGTA GCTTCTGCAC 89778 .......... .......... .......... .......... .......... .......... 241 ATTGAACGAG GTCAGGCACG TTCCATTGAT GACGAAAAAT CTGATATCTC TCAGTCTTTT 89838 .......... .......... .......... .......... .......... .......... 241 GGACAGCAAG GGATTCAGTT GGTCGGGAAA AGATGGAGTC TTACGGGTTT GGAAGGGTTC 89898 .......... .......... .......... .......... .......... .......... 241 AAATCTGATT CTGAAAGGTG TCATGCGTGG TACTTTGTAT TTTCTACAAG GTTCCACGGT 89958 .......... .......... .......... .......... .......... .......... 241 TACAGGTTCA GCCTATGTTG CATCGTCAAA AGTTCACCAG AAGGATATGA CTAAGTTATG 90018 .......... .......... .......... .......... .......... .......... 241 GCACATGAGA CTTGGTCATA TGGGTGAAAG AGGGATGCAA ATTTTGTCAA AGGAGGATCT 90078 .......... .......... .......... .......... .......... .......... 241 TCTTGCTGGT CATAAGGTTA AGAGCCTAGA GTTTTGTGAA CATTGTGTCT TTGGAAAACT 90138 .......... .......... .......... .......... .......... .......... 241 ACATCGCAAC AAGTTTCCAA AGGCCATTCA TAGAACAAAA GGCACACTTG ATTATATTCA 90198 .......... .......... .......... .......... .......... .......... 241 TTCTGATTGC TGGGGTCCAT GCCGTGTTGA GTCTTTGGGA GGCTGCAGAT TTTTTGTGTC 90258 .......... .......... .......... .......... .......... .......... 241 CATTATTGAT GACTACTCAA GGATGACTTG GGTGTACATG AAGAAGCATA AAAGTGAAGC 90318 .......... .......... .......... .......... .......... .......... 241 TTTTCAGAAG TTCAAGGAGT GGAAAATTTT GATGGAAAAT CAAACAGGGA AGAAGATCAA 90378 .......... .......... .......... .......... .......... .......... 241 GAGGTTGCGA ACTGATAATG GGCTGGAATT CTGCTGGTCT AAATTTGATC AATTCTGTAA 90438 .......... .......... .......... .......... .......... .......... 241 GGGTGAAGGG AATGCTCAAC ATCAGAAGCT GTTAATTGCC CTGCGGGGCA ATTCTGAGGA 90498 .......... .......... .......... .......... .......... .......... 241 AGAGGGGAGG CGTGGCACTA TCATAGTGCG TCTGAAGAAT CTGTTTGGAG AATTCAAGTC 90558 .......... .......... .......... .......... .......... .......... 241 AAGGTGGAGA TTTGTTGAAT GCCTTGAATC GGACCTGTTA CAACAGAAAG AACGGGGGTC 90618 .......... .......... .......... .......... .......... .......... 241 AGTTTGGGCC CTTAATTATC TGTCAATTCT GTATTTTGGG CCCAAGCCTT TTAGGGCGTA 90678 .......... .......... .......... .......... .......... .......... 241 GCTTAGCACT ATATATAGAT GTTATGGCAA ACCCTATTCT GTAATTCTGT TTTTTGCCTC 90738 .......... .......... .......... .......... .......... .......... 241 TCCATAATAA AACTGCTCCC CCTCTTCCTG TGGACGTAGC CAATTTATTG GTGAACCACG 90798 .......... .......... .......... .......... .......... .......... 241 TAAATCTGTT GTCTTGTTTT TCGCATTTAT ATTTTCTCGT ATTATCTCGA ATTCCTCATA 90858 .......... .......... .......... .......... .......... .......... 241 ACATACTTGT ATAGTCAGAA GGGTTTACCA ATGAATGTTA GTGAACAGAC GTTTTTGACT 90918 .......... .......... .......... .......... .......... .......... 241 ATTCTTAATG TGATGACAAG CATGTTATGG GGTGGCACAG TGAAGGGTGA GGAAAGAGCT 90978 .......... .......... .......... .......... .......... .......... 241 AGCGTTGGAG CTGAGTTTAG GCATGTTGTG ACTGGGATAG CTCAGTTGGT CAGTATTCCC 91038 .......... .......... .......... .......... .......... .......... 241 AATCTTACCG ATTTTTACCC GGGCTTGGCC TGGTTTGATT TCCAAGGTAT TACAAAGAAG 91098 .......... .......... .......... .......... .......... .......... 241 ATGAAGGTGT TGGCAAAGAG ATTTGATAAG ATATTTGAGG GAATAATTGA TCAAAGACAA 91158 .......... .......... .......... .......... .......... .......... 241 AAATTGGACA GAAATGGTGT TGGCCAAGAT AGCAAAGACT TTTTTGCAAG TTTTGTTAAA 91218 .......... .......... .......... .......... .......... .......... 241 GTTGAAAGAT GAAGCAGATC CCAAAATACC TCTGACCATG ACTGACATCA AAGCCTTACT 91278 .......... .......... .......... .......... .......... .......... 241 TATGGTATGT TTTATCAGTT GTTCATTCTA CTAAATTTTC TTTTTCCAGA AATTGGCATA 91338 .......... .......... .......... .......... .......... .......... 241 TAGTGATATA AGTCATAATA AGATGATTGT AAATGTATTG AAGAATTATT GTTAGTAATA 91398 .......... .......... .......... .......... .......... .......... 241 AATATATTCA TGTCCTGAAC TGTTAGTAGT TACCATGTTA TTGGACTGCA TTAAAGAAAG 91458 .......... .......... .......... .......... .......... .......... 241 AGTCGGCAAA TTTAGCATCA GATTATATGT GAAGACTTAA CTGTGAATTA AGACTCTGAA 91518 .......... .......... .......... .......... .......... .......... 241 CTTTGAACTG AACTCCAATA TACAGTTTTA CAGTTAAAAA ATTGTTGAAT ATGATAATAA 91578 .......... .......... .......... .......... .......... .......... 241 CTTCACATCT ACTATGGACA GGAAATGGTT CTCGGTGGAA CTGGCTCAAC CTCCAATACG 91638 .......... .......... .......... .......... .......... .......... 241 ATTGAGTTTG CCATGGCTGA AATTATGAAC AAACCAGATG TCCTGAGAAA ATTACAACAA 91698 .......... .......... .......... .......... .......... .......... 241 GAAGTAGATA CAGTTGTGGG AAAAGATAAT ATTGTAGAAG AGTCTCATAT TCAGCAATTA 91758 .......... .......... .......... .......... .......... .......... 241 CCATGTATCT ATGCAGTGAT GAAAGAAGTA TTGCGCATGC ATCCAGCTAC TCCACTATTG 91818 | || || ||| || .......... ......TAAT GACAGAGGT. .......... .......... .......... 254 GTGCCACATT GTCCAAGTGA GACAGTCACT GTTGGAGGAT ACACTGTTCC TGAAGGATCT 91878 .......... .......... .......... .......... .......... .......... 254 CGTGTTTTCA TAAATGTTTG GGCTATACAG AGAGATACTT CTATCTGGAA AAGTCCAACA 91938 .......... .......... .......... .......... .......... .......... 254 GAGTTCTGTC CAGAGAGATT TTTGGAAAAT AAATGGGACT ATAGTGAAAA TGATTTCAAC 91998 .......... .......... .......... .......... .......... .......... 254 TATTTCCCAT TTGGTTCTGG AAGAAGAATC TGTGCGGGGA TAGCCATGGC AGACAGGATG 92058 .......... .......... .......... .......... .......... .......... 254 TTCACGTATT CACTGGCTTC GATCATTCAT TCTTTCGACT GGAAATTGCC CCAAGGAGAA 92118 .......... .......... .......... .......... .......... .......... 254 ACATTGGACG TTACGGAGAA GTTCAGTAGT ATTTTGAAGA AGAAAATACC TCTGGTGGCT 92178 .......... .......... .......... .......... .......... .......... 254 TTACCTACTC CAAGATAGTC CAATTCAACA CTGTATGAGT AAGATAAAAA TGTGTTAGTA 92238 .......... .......... .......... .......... .......... .......... 254 GAGAGCCGTG TTCTGTATGA TGATTTTATC TTTTGTATTA TGAATTATAA AAACGGGATC 92298 .......... .......... .......... .......... .......... .......... 254 CACTATATAA ATAAAGATAT AAAATATCGA GAGAAATAAC CTCACAAAAT TAGCTCAACT 92358 .......... .......... .......... .......... .......... .......... 254 TAAAAAGAGG CTCACACTAG TGATAAAGTA CCACTTGTGT CTCACAAAAA TCTCTCCCTA 92418 .......... .......... .......... .......... .......... .......... 254 AATAAAACTC TCAGAGCCCT TAGGATTATA TTGTAAATTC TACCAAGTTA GAAGTAATGA 92478 .......... .......... .......... .......... .......... .......... 254 GCCTCTTTTT ATAGAACTAG CTTTGAGAAC GTGCTTTGCA TGTTTATTCC AAAAACTTAA 92538 .......... .......... .......... .......... .......... .......... 254 ATTGTAAATA TAAATTTTAT ATAGTATATT ATATCACTTT CTTTGTGCTG TGGACTAAAA 92598 .......... .......... .......... .......... .......... .......... 254 ATGATAACGT ATAAAAAGAA CAAAAACTAA GTTATAGAGT CATTTTAGTC TAGCAATGCT 92658 .......... .......... .......... .......... .......... .......... 254 TACCTTAACA TATATACTTA ATTGGTTGTA ACTCAACTAT ATCAAGATCT CTTGAAACTT 92718 .......... .......... .......... .......... .......... .......... 254 ATCAGTTATC TTACAACAAC ATATATACAA AGATTTTATG ATGATGCTAA AATTTTGTAC 92778 .......... .......... .......... .......... .......... .......... 254 GAAGTTACCT AACATATCAT TGATTTGGTC CTCTAAGTTT TTAAAGTTAC AAGAGTGACA 92838 .......... .......... .......... .......... .......... .......... 254 TTTATGACAT AGTTTTTATC CATAATATCA TAATCAACTA GATAATTAAC TGATCACTGT 92898 .......... .......... .......... .......... .......... .......... 254 GTTACGAAGA CCATGAGTCC ATGACTTTTT TGGGATCACT GATTAGCTAG AGTCATTATA 92958 || ||| | | || | || | ||||| .......... .......... .......... CAGGTTCAGT GGTTCGATA- ATCGATTATT 283 GCATCCAATA AGAAGTATAT TTAACAACAA CTATTAATTT TATAGTATGT ACATAACTTT 93018 | | | | |||| GGACCAGGTT AGAA...... .......... .......... .......... .......... 297 CTGAGATGAG GAAGTTTGAG CAAAAAAAAA ATTTAAGCAA TTTCACGCTT GATGTTAAAA 93078 .......... .......... .......... .......... .......... .......... 297 GCAGTGTGAA TCACTTCAAT AATTAAACTG TCTTCCTGCA AAACATGGCT TCAAACTTCT 93138 .......... .......... .......... .......... .......... .......... 297 AAAACATGTC TTGCAGCTCT CCTGACAGTT CAATGGTACA AATAAATGAA CATCAAATTC 93198 .......... .......... .......... .......... .......... .......... 297 TCCAATACGT TAGCATGTTT GATAGATTCT AATAGTTAAA TAATGAAATA ACTCTAAATA 93258 .......... .......... .......... .......... .......... .......... 297 TTTGTGCAAT GATCAGAGGC GG 93280 || || .......... ......AGAG GG 303 hqPGS_C08HBa0060C12.1+_SGN-E271645- (88041 88211,88677 88745) ******************************************************************************** EST sequence 344 -strand 595 n (File: SGN-E271645-) 1 CATATATTCC GAATGAATTG GTTGATGTTG TTTCTCTCTG TATATTGTAC TCTCATATTT 61 ATAGTGGATT GCTCATCTCC TTTGTGAACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGGTGTCTT TTGGTATATT TCTCGTTGTC TTCTTACTCG TGGTCTTTCG AAGTTTGCTT 181 TGCTAGCTTC CGCATTTACA CCTGCTTATT TCGATCCTAA CAAGTGGGTA TTAGAGCCAT 241 TTAATGACAG AGGTCAGGTT CAGTGGTTCG ATAATCGATT ATTGGACCAG GTTAGAAAGA 301 GGGTGGTGGT TCATCTTGAC AGGTGGTAGG TTCTAGCCGC AATCTTTTTG ACAGTAATGA 361 AGATTTTGTT GGAGAAATTG TTTCAGAGAG GTTTTCTATG GTTGAGACAT AAATTTTACA 421 AAGGAGATTA AGAAGAAGAG AAGCAAGTTG TTGAAGATTA AATGAAGAAT GTGGAGAAAT 481 TTATTTTGGT CAGAAATACA GGCCAAGGGG GAGGAGATTT GTTGGATTTT ATTTACCATA 541 ATTTCTTAAC ATAAATAGGT TTTCCTTTTA GGGAAAAATT TTGGATTGAC TAATC Predicted gene structure (within gDNA segment 82394 to 88481): Exon 1 83011 83031 ( 21 n); cDNA 174 195 ( 22 n); score: 0.595 Intron 1 83032 86292 (3261 n); Pd: 0.000 (s: 0), Pa: 0.109 (s: 0) Exon 2 86293 86315 ( 23 n); cDNA 196 217 ( 22 n); score: 0.565 Intron 2 86316 87514 (1199 n); Pd: 0.227 (s: 0), Pa: 0.000 (s: 0.81) Exon 3 87515 87881 ( 367 n); cDNA 218 595 ( 378 n); score: 0.804 MATCH C08HBa0060C12.1+ SGN-E271645- 0.804 411 0.691 C PGS_C08HBa0060C12.1+_SGN-E271645- (83011 83031,86293 86315,87515 87881) Alignment (genomic DNA sequence = upper lines): TTTACTTTGG T-GTTTCATC AGTAACTCAA ACAAGGGATT GCCACCAGGG CCTAAACCTT 83069 ||| ||||| | | ||| | | TTTGCTTTGC TAGCTTCCGC AT........ .......... .......... .......... 195 TGCCCTTGAT AGGTAATCTC TATTCTCTTG ATCCCACCTA TTTTGCATCT CTTTCCCAAA 83129 .......... .......... .......... .......... .......... .......... 195 CTTATGGCCC CATTTGTAGA CTCTGGCTTG GTAAAAAAGT TGGGATTATT ATTACTTCAC 83189 .......... .......... .......... .......... .......... .......... 195 CTACCTTAGC TCGTGAGGTT CTTAAGGATA AAGACACCAT TTTTGCTAAC AGAGATGTCC 83249 .......... .......... .......... .......... .......... .......... 195 CAGCTGCTGC AAAAGAATTA TCATATGGTG GCAATAGCAT ACTTTGGACT CCTTATGGAC 83309 .......... .......... .......... .......... .......... .......... 195 CGAAATGGAG AATGTTGAGG AAGGTTTGCG TTCGCAATAT GCTTAGTTAT TCTACTTTAG 83369 .......... .......... .......... .......... .......... .......... 195 ATTCTGTTTA TGCACTAAGG AAAAGGGAGC TTAGACAATC GATCAATTAC TTCTACAGTC 83429 .......... .......... .......... .......... .......... .......... 195 AGAAGGGTTT ACCAGTAAAT GTTGGTGAGC AGATGTTCTT GAGTTCACTT AATGTGATTA 83489 .......... .......... .......... .......... .......... .......... 195 CAAGCATGTT ATGGGGTGGC ACAGTGAAGG GTGAGGAAAG AGCTACTCTT GGAGCTGAGT 83549 .......... .......... .......... .......... .......... .......... 195 TTAGGCATAT TGTCACTGAA ATGGCTGCGC TGGTCAGTAT TCCCAATTAT TCCGATTTTT 83609 .......... .......... .......... .......... .......... .......... 195 ACCCGGGCTT GGCCTGGTTT GATTTCCAAG GTGTTGCAAA AAAGATGAAG GTGTTGGCAA 83669 .......... .......... .......... .......... .......... .......... 195 GGAGATTTGA TAAGATGTTT GAGAGCATGA TTGATCAAAG ACAAAAATTG CATAGAAATG 83729 .......... .......... .......... .......... .......... .......... 195 CTGAGATGGG ATATGGTGTT GGCCAAGAAA GCAAAGACTT TTTGCAAGTT TTGCTGAAGT 83789 .......... .......... .......... .......... .......... .......... 195 TGAAAGATGA AGCAGATCCC AAAGTACCTC TGACCATGAC TGAAATCAAA GCCTTACTTA 83849 .......... .......... .......... .......... .......... .......... 195 TGGTATGTTT ATCACTTGTG TATTCTACTA AATTTGCTTT AAATAGTACA TCTCCTTACC 83909 .......... .......... .......... .......... .......... .......... 195 TGTTAGGTAG TTAATGGATG AAAAATTGGC TTATAGTGAT GTTAGTCATA ATAAGAGGAT 83969 .......... .......... .......... .......... .......... .......... 195 CAATGCTAAT ACAAGTTAAA ATTAGGATTG TAAATGTATT GAAGAATTAT TGTGTAATAA 84029 .......... .......... .......... .......... .......... .......... 195 ATATTAGATT CGTATATCCA TGTCTTGAAA TTGTTAGTTG CTACCATGGT ATTGGACTGC 84089 .......... .......... .......... .......... .......... .......... 195 ATTAAAGAAA GAGTCGGCAA ATTTAGCATC AGATTATATG TGAAGACTTA ACTGTGAATT 84149 .......... .......... .......... .......... .......... .......... 195 AAGATGGTGA ACCTTAGGCT GAACTCTAAT ATACAGTTTT ACAGTTAAAA AATTGGTGTA 84209 .......... .......... .......... .......... .......... .......... 195 CATGATAATA ACTTCACAAG TACTATGGAC AGGAAATGGT TCTCGGTGGA ACTGCCACTA 84269 .......... .......... .......... .......... .......... .......... 195 CCGCCAACAC AGTTGAGTTT GCCCTGGCTG AAATTATGCA CAAACCGGAT ATCCTGAGTA 84329 .......... .......... .......... .......... .......... .......... 195 AATTACAACA AGAAGTAGAT ACAGTTGTGG GAAAAGATAA TATTGTAGAA GAGTCTCATA 84389 .......... .......... .......... .......... .......... .......... 195 TTCAGCAATT ACCATATCTC TATGCAGTGA TGAAAGAAGT ATTGCGCATG CATCCAGCTA 84449 .......... .......... .......... .......... .......... .......... 195 CTCCGCTATT GGTGCCACAT TGTCCAAGTG AAACATGCAC TGTGGGAGGA TACACTGTTC 84509 .......... .......... .......... .......... .......... .......... 195 CTAAAGGATC TCGTGTTTTC ATAAATGTAT GGGCTATACA AAGAGATCCT TCTATCTGGA 84569 .......... .......... .......... .......... .......... .......... 195 GAAATCCAAC AGAGTTCCGT CCAGAGAGAT TTTTGGACAA TAAATGGGAT TTTAGTGGAA 84629 .......... .......... .......... .......... .......... .......... 195 ATGATTTCAA CTATTTTCCA TTTGGTTCTG GCAGAAGAAT CTGTGTGGGG ATAGGCATGG 84689 .......... .......... .......... .......... .......... .......... 195 CAGAGAGGAT GTTCATGTAT GCACTGGCTT CGCTCATTCA TTCTTTTGAT TGGAAATTGC 84749 .......... .......... .......... .......... .......... .......... 195 CTGAAGGAGA GACACCAGAC CTTACAGAGA TGTTTGATAT TACTTTGAGG AAGAAAATTC 84809 .......... .......... .......... .......... .......... .......... 195 CTCTGGTGAC TATACCTACT CCAAGATTGT CCAATCCAAC ACTCTATGAG TAAGATAAAG 84869 .......... .......... .......... .......... .......... .......... 195 ATATATCTGT TGAGAGTCGT CTTCTGTATG ATGATTCTGT ATTATCTCGA ATCTGTGCAT 84929 .......... .......... .......... .......... .......... .......... 195 TTTCTTTACT ATGTAAGAAA TGTCACTTTC TTCTCTCTCT TGTTCAATGT TTAAACCAAC 84989 .......... .......... .......... .......... .......... .......... 195 TTTGGTCACT ACTATAGTAT TGCTGAGGTC TGAGGAGATG AAATTGCATT AGTTTCTTTT 85049 .......... .......... .......... .......... .......... .......... 195 AAACAATGAT TGCGGGTATT ACTAGTCCTA TTCTTAATTA ATAGGAGTAA AATGATAAAC 85109 .......... .......... .......... .......... .......... .......... 195 TTACTATGTC AATTATTATT TTCTTAATTT TTGAGCTAAG TAAAAAATAG GCAAGTAAAT 85169 .......... .......... .......... .......... .......... .......... 195 TGGGACATAT CCCATAGGGA ATAGGAGAAT TGGAAGAGTC GCATCGAGCA ATTAAATGTA 85229 .......... .......... .......... .......... .......... .......... 195 CGGAAAAGGG TCAAAATTAC CTCTGAACTA TGTAAAATAA ACCCTTATAC CTTCGTTACA 85289 .......... .......... .......... .......... .......... .......... 195 TTTTTGTGAT AAAAAAGGCT CCTGCCGTTA TTCTAATAGA CCATAAACAC CCTCAAAAGT 85349 .......... .......... .......... .......... .......... .......... 195 TAACAATCTA ATTTTTTTAT TGATGTGAAA AGCCACGTGG GACTAATCCC TCCTCCACAA 85409 .......... .......... .......... .......... .......... .......... 195 GCGTTGCCAA CTATATTCAC TACTTAAAAA AAATTAAACT TTTAGCAGCG ACAAAAGTCA 85469 .......... .......... .......... .......... .......... .......... 195 CCATAAAAGA CCATAACATT GCCACTAAGG GTTTTCACTG CGTTAGATTA TGATTTTGTT 85529 .......... .......... .......... .......... .......... .......... 195 TTTAGAAAAT CGCAAAGAAA TTGTTGTCAA TAAGAAGTTT GAAGACACAA TATATTTTGT 85589 .......... .......... .......... .......... .......... .......... 195 GTTTATGTCA TATGTAAATG CATAAATTTG ATCTATCAAT TTATCTTTTT CTTTGTTTTT 85649 .......... .......... .......... .......... .......... .......... 195 GCAGAAAAAA CAACAATTTG AGAGGATGAG TATTTTACCC TGTATAGGCC TGAGTAATAT 85709 .......... .......... .......... .......... .......... .......... 195 ACTACAAAGA TATTTAAATA TTCAAAAGAA ATGACCTTAA ATTCCCTGCC ATTTAAATTA 85769 .......... .......... .......... .......... .......... .......... 195 ATTACAAAAA TTTCCTTTTT CTGTCTCTCT ATTAACTAAC ATGGGGATAC ATCTCTCTAA 85829 .......... .......... .......... .......... .......... .......... 195 CTCTCCCTAC ATCGCGCTTC ACTCCCGAAA AAATCACGCG TTTAACTAAT TAACAATGTA 85889 .......... .......... .......... .......... .......... .......... 195 TCAGCAACTT CTTCCAACTA AGCATTTTTG AATTACCGTC ATGTTAACTT ATCATCAATT 85949 .......... .......... .......... .......... .......... .......... 195 CCAAATTCTA GATAGAAGAA TTTCTTCATC ATCTTTTTTT TCTTGTAATA TATCAGAATT 86009 .......... .......... .......... .......... .......... .......... 195 TTGATAGTTT CAAATTATTG ATCGTCAACT CAATTTAAGA CCCCAATCAG TATAAATCAT 86069 .......... .......... .......... .......... .......... .......... 195 GTTTATAATT ATGTACCGGA TACATAACTA TGACAACCTT CATTATATTT TAGTACCTGA 86129 .......... .......... .......... .......... .......... .......... 195 TGCATACACC TATTGTTATT TATCTGAAAA AAAGTTACCA AATTTTGATT CTAGTTATTT 86189 .......... .......... .......... .......... .......... .......... 195 TGTTATGTAT CTGAACTCTT TAAGTTCTAA TGTATTTGGA GATAGTTCTA TGCTGTATAT 86249 .......... .......... .......... .......... .......... .......... 195 ACCTGATGTC TATTTTTTCC CAATACATCA ATTTATAATT CAGCTGTAAT TGCTGATTTC 86309 | | |||| ||||| .......... .......... .......... .......... ...TTACACC TGCTTATTTC 212 ATTTTCGTAA AAAAAAAAAT ATTATCTCCA ACAATGATTT CATCGCTTCT GTATCGTTTG 86369 | | -GATCC.... .......... .......... .......... .......... .......... 217 TAATTTTCAG ACATCCAGAC TCCAAAATGT CGTTGAGAGT TTCATGATGA ATATTCTTCT 86429 .......... .......... .......... .......... .......... .......... 217 AAATTACGAA CTTCTGCAGC AAAGTTAAAA GGATTATGGA CCATTTACTT GAACTAGTTT 86489 .......... .......... .......... .......... .......... .......... 217 GAATTTTAAA ATTTTGAATA TATTACGCGT TATGAGAGAT CTACCTTCTT GAATTGATAT 86549 .......... .......... .......... .......... .......... .......... 217 GTTAGTTTTG AATACTAAAA TTATATAGAG TTATTAGCAC TTCTCTTGAA ATTTGGAATT 86609 .......... .......... .......... .......... .......... .......... 217 TTATTCTCAA ATTTCACATA TCTTTAATCT TATAATTTCA TCTCTACACA AATAAGATAA 86669 .......... .......... .......... .......... .......... .......... 217 AAATATGTTT TATAAATATG GTGTTAAATA TTGAGCTTTT CTTTTCAGTA AAGAAGATGA 86729 .......... .......... .......... .......... .......... .......... 217 ATGTATCTGA GGACATGATT GTCAAACACT TCAAATTTTG CTGGCAACAA ATCCATAGAA 86789 .......... .......... .......... .......... .......... .......... 217 AGAAACCATT ATTTTTCTGA AAATTGAATG ATGAACGAAA TGCCAAACAA ATTATGCTTT 86849 .......... .......... .......... .......... .......... .......... 217 CAAGGTTTCT TATAATACCA ACAAAGTGCT TTTTCCATTT CAATTCAGGG GTGACTCTGC 86909 .......... .......... .......... .......... .......... .......... 217 TTTGTTTTCA TCCTACTGCT CTTTCTATAT TCATCTCATT CTTTAGCAAA AAAAAAAATT 86969 .......... .......... .......... .......... .......... .......... 217 AGCGGTGCAA AAGCTTCAAA TGTCTCTCAA ATTCTTCAAA ACCCTTTTTG ATTCTTCCCC 87029 .......... .......... .......... .......... .......... .......... 217 ATGGCTCCTT CAACAACTCA ATGTTGACTG CTGCTGGAAT AGAAATTTCA TATGGTGGCA 87089 .......... .......... .......... .......... .......... .......... 217 ATAACATACT TTGGAATCCT TATGGACCGA AATGGCGAAT GTTGAGGAAG GTTTGTGTTT 87149 .......... .......... .......... .......... .......... .......... 217 GCGAGATGCT TAGTTCTTCT ACTTTAGATT CTGTATATGC ACTAAGGAGA AGGGAGGTTA 87209 .......... .......... .......... .......... .......... .......... 217 GACAATCGAT CAATTACTTT GTTGAATCCT TGAATCGGAC CCGTTACAAC AGAAAGAACG 87269 .......... .......... .......... .......... .......... .......... 217 GGGGTCAGTT TGGGCCCTTA ATTATCTGTC AATTCTGTAT TTTGGGCCCA AGCCTTTTAG 87329 .......... .......... .......... .......... .......... .......... 217 CGCGTAGCTT AGCACTATAT ATAGACGCTA TGGCAAACCC TATTCTGTAA ATTCTGTTTT 87389 .......... .......... .......... .......... .......... .......... 217 TTGCCTCTCC ATAATAAAAC TGCTTTCCCT CTTCCTGTGG ACGTAGCCAA TTTATTGGTG 87449 .......... .......... .......... .......... .......... .......... 217 AACCACGTAA ATTTGTTGTC TTGTTTTTCG CATTTATATT TTCTCGTATT ATCTCGAATT 87509 .......... .......... .......... .......... .......... .......... 217 CCGCATAACA AATTGGTATC AGAGCCAGAT TCAATGAC-G AAGTCAGGTT CAGTGGTTTG 87568 ||||| | | ||||| |||||| || | |||||| | | |||||||| |||||||| | .....TAACA AGTGGGTATT AGAGCC--AT TTAATGACAG AGGTCAGGTT CAGTGGTTCG 270 ATAATCGATG ATTGAACCAG GTTAGAAAGA ---T-GT-GT TCATCTTGGC -GGT-GTA-G 87620 ||||||||| |||| ||||| |||||||||| | || || |||||||| | ||| ||| | ATAATCGATT ATTGGACCAG GTTAGAAAGA GGGTGGTGGT TCATCTTGAC AGGTGGTAGG 330 TTCTAGCAGT AACCTTTTTG ACAGTAATGA AGATTTTGTT GGAGAAATCG TTTCAGAGAG 87680 ||||||| | || ||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTCTAGCCGC AATCTTTTTG ACAGTAATGA AGATTTTGTT GGAGAAATTG TTTCAGAGAG 390 ATTCTTTGT- GTTGAGACAT AAATTTTGCA AAGTAGATTA TGGAGAGGAG AAGCAAGTTG 87739 || | | | |||||||||| ||||||| || ||| |||||| | ||| ||| |||||||||| GTTTTCTATG GTTGAGACAT AAATTTTACA AAGGAGATTA AGAAGAAGAG AAGCAAGTTG 450 TTGAAGATTA AGTCAAGAAG GTGGACAAAT TTATTTT-GT CAGAAATTCA GGCCAAGGGG 87798 |||||||||| | | ||||| ||||| |||| ||||||| || ||||||| || |||||||||| TTGAAGATTA AATGAAGAAT GTGGAGAAAT TTATTTTGGT CAGAAATACA GGCCAAGGGG 510 GA-GA--TTT GTTGGGTTTT ATTTGCCCTA AATTTCTTAC CATAAATAGG TTTTCCTTGT 87855 || || ||| ||||| |||| |||| || | ||||||||| |||||||||| |||||||| | GAGGAGATTT GTTGGATTTT ATTTACCAT- AATTTCTTAA CATAAATAGG TTTTCCTTTT 569 AGGAAAAGAT TTTGGATTGA CTAATC 87881 ||| ||| || |||||||||| |||||| AGGGAAAAAT TTTGGATTGA CTAATC 595 hqPGS_C08HBa0060C12.1+_SGN-E271645- (87515 87881) ******************************************************************************** EST sequence 359 -strand 574 n (File: SGN-E206285-) 1 AAACATATAG GGCCAAGCAA GTTCACGTAT CATAGATGTT TGTTGGGTTT TATTTGCTCT 61 AAATTTCTTA CCATAAATAG ATTTTCCTTG TAGGAAAAGG TTTTGGATTG ACTAATCCTT 121 TTCTTGTAGG GAAAGGTTTA GGATTCTATA AATAGAGGCA TGTTCCTTTT AACTTAGTTA 181 ACATTCACAA TGTAGTCTTA AGGGCTTTGA GAGTTTTGGT TAGAGGGAGA ATTTGTGGGT 241 CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT GAATTGGTTG 301 AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC ATCTCCTTTG 361 TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT ATATTTCTCG 421 TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT TTACACCTGC 481 TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA AGCCCTTGCT 541 TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 86813 to 89820): Exon 1 87803 88257 ( 455 n); cDNA 39 494 ( 456 n); score: 0.948 MATCH C08HBa0060C12.1+ SGN-E206285- 0.948 455 0.793 C PGS_C08HBa0060C12.1+_SGN-E206285- (87803 88257) Alignment (genomic DNA sequence = upper lines): TTTGTTGGGT TTTATTTGCC CTAAATTTCT TACCATAAAT AGGTTTTCCT TGTAGGAAAA 87862 |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TTTGTTGGGT TTTATTTGCT CTAAATTTCT TACCATAAAT AGATTTTCCT TGTAGGAAAA 98 GATTTTGGAT TGACTAATCC TTTTCTTGTA GGAAAAGGTT TAGGACTCTA TAAATAGAGG 87922 | |||||||| |||||||||| |||||||||| || ||||||| ||||| |||| |||||||||| GGTTTTGGAT TGACTAATCC TTTTCTTGTA GGGAAAGGTT TAGGATTCTA TAAATAGAGG 158 CATGTTCCTT TTAACTTAAT CAACATTCAC AATGTAGTCT TAAAAGCTTT GAGAGTTTTG 87982 |||||||||| |||||||| | ||||||||| |||||||||| ||| ||||| |||||||||| CATGTTCCTT TTAACTTAGT TAACATTCAC AATGTAGTCT TAAGGGCTTT GAGAGTTTTG 218 GTTAGAGGGA GAATCTGTGG GTCACAAGCT TGATATGTTA TCACTTGTGT GAACCTCCCA 88042 |||||||||| |||| ||||| |||||||||| ||||| |||| | |||||||| |||||||||| GTTAGAGGGA GAATTTGTGG GTCACAAGCT TGATACGTTA TTACTTGTGT GAACCTCCCA 278 TGTATTCTAA GTGAATTGGT TGAGGTTGTT TCTCTCTGTA TTTTGTACTC TCATATTTAT 88102 |||||||| | |||||||||| |||| ||||| || ||||||| |||||||||| |||||||||| TGTATTCTGA GTGAATTGGT TGAGATTGTT TCCCTCTGTA TTTTGTACTC TCATATTTAT 338 AGTGGATTGC TCATCTCCTT TGTGGACGTA GGTCGATTGA CCGAACCACG TTAAATCTTT 88162 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AGTGGATTGC TCATCTCCTT TGTGGACATA GGTCGATTGA CCGAACCACG TTAAATCTTT 398 GTGTCTTTTG ATATATTTCT CGTTGTCTTC TTACTCGTGG TCTTTCGAGG TTTGTATTGC 88222 |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | || | ||||| GTGTCTTTTG GTATATTTCT CGTTGTCTTC TTACTCGTGG TCTTTCGATG TTAGCATTGC 458 TAGCTTCCGC GTTTACACTT GCTTA-TTTT CGGTCC 88257 |||||||||| |||||||| | ||||| |||| |||||| TAGCTTCCGC GTTTACACCT GCTTATTTTT CGGTCC 494 hqPGS_C08HBa0060C12.1+_SGN-E206285- (87803 88257) ******************************************************************************** EST sequence 13 +strand 747 n (File: SGN-E211090+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC TGCTTATTTT CGGTCCTAAC ATATCTGAGT TTGCAGTTCT GTCCCTCCAC 541 CCCCTTCTTT TTGCAGGCAC AAATGGAATC AGTAAACTTA GCAGCAAATT CTTATTATGT 601 ACCAGAATCT GATTTTACGA GTTATTTGAA CTTTGGTGCT GCTGTCAGTG AGGTGGAGAT 661 TGATATCCTG ACCGGAGAGA CTACCATTTT GCAATCTGAT ATTATTTACG ACTGTGGGCA 721 GAGCTTGAAT CCAGCCGTTG ATATGGG Predicted gene structure (within gDNA segment 86477 to 91232): Exon 1 87804 88272 ( 469 n); cDNA 54 521 ( 468 n); score: 0.955 Intron 1 88273 88569 ( 297 n); Pd: 0.000 (s: 0.88), Pa: 0.921 (s: 0) Exon 2 88570 88578 ( 9 n); cDNA 522 530 ( 9 n); score: 0.667 MATCH C08HBa0060C12.1+ SGN-E211090+ 0.955 478 0.640 C PGS_C08HBa0060C12.1+_SGN-E211090+ (87804 88272,88570 88578) Alignment (genomic DNA sequence = upper lines): TTGTTGGGTT TTATTTGCCC TAAATTTCTT ACCATAAATA GGTTTTCCTT GTAGGAAAAG 87863 ||||||| || |||||||||| | ||||||| |||||||||| |||||||||| ||||||||| TTGTTGGATT TTATTTGCCC TG-ATTTCTT ACCATAAATA GGTTTTCCTT TTAGGAAAAG 112 ATTTTGGATT GACTAATCCT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGAGGC 87923 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GTTTTGAATT GACTAATCCT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGATGA 172 ATGTTCCTTT TAACTTAATC AACATTCACA ATGTAGTCTT AAAAGCTTTG AGAGTTTTGG 87983 || ||||||| |||||||||| | |||||||| |||||||||| | | |||||| |||||||||| ATATTCCTTT TAACTTAATC AGCATTCACA ATGTAGTCTT ACAGGCTTTG AGAGTTTTGG 232 TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTCCCAT 88043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTCCCAT 292 GTATTCTAAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT CATATTTATA 88103 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTATTCTGAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT TATATTTATA 352 GTGGATTGCT CATCTCCTTT GTGGACGTAG GTCGATTGAC CGAACCACGT TAAATCTTTG 88163 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GTGGATTGCT CATCTCCTTT GTGGACGTAG GTTGATTGAC CGAACCACGT TAAATCTTTG 412 TGTCTTTTGA TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGAGGT TTGTATTGCT 88223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTTTGA TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGAGGT TTGTATTGCT 472 AGCTTCCGCG TTTACACTTG CTTATTTTCG GTCCTAACAA GTATTTGTTG GGTTTTATTT 88283 |||||||||| ||||||| || |||||||||| ||||||||| | | ||| AGCTTCCGCG TTTACACCTG CTTATTTTCG GTCCTAACAT ATCTGAGTT. .......... 521 GCCCTAAATT TCTTACCATA AATAGGTTTT CCTTGTAGGA AAAGATTTTG GATTGACTAA 88343 .......... .......... .......... .......... .......... .......... 521 TCCTTTTCTT GTAGGAAAAG GTTTAGGACT CTATAAATAG AGGCATGTTC CTTCTAACTT 88403 .......... .......... .......... .......... .......... .......... 521 AATCAACATA TCACAAAGTA GTCTTAAAAG CTTTGAGAGT TTTGGTTAGA GGGAGAATCT 88463 .......... .......... .......... .......... .......... .......... 521 GTGGGTCACA AGCTTGATAT GTTATCACTT GTGTGAACCT CCCATGTATT CTGAGTGAAT 88523 .......... .......... .......... .......... .......... .......... 521 TGGTTGAGGT TGTTTCTCTC TGTATTTTGT ACTCTCATAT TTATAGTGGA TTGCT 88578 || | | || .......... .......... .......... .......... ......TGCA GTTCT 530 hqPGS_C08HBa0060C12.1+_SGN-E211090+ (87804 88272) ******************************************************************************** EST sequence 105 +strand 490 n (File: SGN-E205772+) 1 AACAATTTGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTACTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG 301 AGTGAATTGG TTGAGGTTGA TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTCCT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGTTGTCTT CTTACTCGTG GTCTTTCGAG GTTTGTATTG CTAGCTTCCG 481 CGTTTACACC Predicted gene structure (within gDNA segment 85673 to 89424): Exon 1 87804 88240 ( 437 n); cDNA 54 489 ( 436 n); score: 0.961 MATCH C08HBa0060C12.1+ SGN-E205772+ 0.961 437 0.892 C PGS_C08HBa0060C12.1+_SGN-E205772+ (87804 88240) Alignment (genomic DNA sequence = upper lines): TTGTTGGGTT TTATTTGCCC TAAATTTCTT ACCATAAATA GGTTTTCCTT GTAGGAAAAG 87863 ||||||| || |||||||||| | ||||||| |||||||||| |||||||||| ||||||||| TTGTTGGATT TTATTTGCCC T-GATTTCTT ACCATAAATA GGTTTTCCTT TTAGGAAAAG 112 ATTTTGGATT GACTAATCCT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGAGGC 87923 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GTTTTGAATT GACTAATCCT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGATGA 172 ATGTTCCTTT TAACTTAATC AACATTCACA ATGTAGTCTT AAAAGCTTTG AGAGTTTTGG 87983 || ||||||| |||||||||| | |||||||| ||||| |||| | | |||||| |||||||||| ATATTCCTTT TAACTTAATC AGCATTCACA ATGTACTCTT ACAGGCTTTG AGAGTTTTGG 232 TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTCCCAT 88043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTCCCAT 292 GTATTCTAAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT CATATTTATA 88103 ||||||| || |||||||||| ||||||| || |||||||||| |||||||||| ||||||||| GTATTCTGAG TGAATTGGTT GAGGTTGATT CTCTCTGTAT TTTGTACTCT TATATTTATA 352 GTGGATTGCT CATCTCCTTT GTGGACGTAG GTCGATTGAC CGAACCACGT TAAATCTTTG 88163 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GTGGATTGCT CATCTCCTTT GTGGACGTAG GTTGATTGAC CGAACCACGT TAAATCTTTG 412 TGTCTTTTGA TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGAGGT TTGTATTGCT 88223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTTTGA TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGAGGT TTGTATTGCT 472 AGCTTCCGCG TTTACAC 88240 |||||||||| ||||||| AGCTTCCGCG TTTACAC 489 hqPGS_C08HBa0060C12.1+_SGN-E205772+ (87804 88240) ******************************************************************************** EST sequence 106 +strand 456 n (File: SGN-E205773+) 1 AACAATTAGT TAATTTAAAT CCATTAGCCA CTCTTGCTCA TCTTTTAAGT ATCTTGTTGG 61 ATTTTATTTG CCCTGATTTC TTACCATAAA TAGGTTTTCC TTTTAGGAAA AGGTTTTGAA 121 TTGACTAATC CTTTTCTTGT AGGAAAAGGT TTAGGACTCT ATAAATAGAT GAATATTCCT 181 TTTAACTTAA TCAGCATTCA CAATGTAGTC TTACAGGCTT TGAGAGTTTT GGTTAGAGGG 241 AGAATCTGTG GGTCACAAGC TTGATATGTT ATCACTTGTG TGAACCTACC ATGTATTCTG 301 AGTGAATTGG TTGAAGCTGT TTCTCTCTGT ATTTTGTACT CTTATATTTA TAGTGGATTG 361 CTCATCTACT TTGTGGACGT AGGTTGATTG ACCGAACCAC GTTAAATCTT TGTGTCTTTT 421 GATATATTTC TCGATGGCTT CTTACTCGTG GTCTTT Predicted gene structure (within gDNA segment 86941 to 89489): Exon 1 87804 88207 ( 404 n); cDNA 54 456 ( 403 n); score: 0.948 MATCH C08HBa0060C12.1+ SGN-E205773+ 0.948 404 0.886 C PGS_C08HBa0060C12.1+_SGN-E205773+ (87804 88207) Alignment (genomic DNA sequence = upper lines): TTGTTGGGTT TTATTTGCCC TAAATTTCTT ACCATAAATA GGTTTTCCTT GTAGGAAAAG 87863 ||||||| || |||||||||| | ||||||| |||||||||| |||||||||| ||||||||| TTGTTGGATT TTATTTGCCC TG-ATTTCTT ACCATAAATA GGTTTTCCTT TTAGGAAAAG 112 ATTTTGGATT GACTAATCCT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGAGGC 87923 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GTTTTGAATT GACTAATCCT TTTCTTGTAG GAAAAGGTTT AGGACTCTAT AAATAGATGA 172 ATGTTCCTTT TAACTTAATC AACATTCACA ATGTAGTCTT AAAAGCTTTG AGAGTTTTGG 87983 || ||||||| |||||||||| | |||||||| |||||||||| | | |||||| |||||||||| ATATTCCTTT TAACTTAATC AGCATTCACA ATGTAGTCTT ACAGGCTTTG AGAGTTTTGG 232 TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTCCCAT 88043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TTAGAGGGAG AATCTGTGGG TCACAAGCTT GATATGTTAT CACTTGTGTG AACCTACCAT 292 GTATTCTAAG TGAATTGGTT GAGGTTGTTT CTCTCTGTAT TTTGTACTCT CATATTTATA 88103 ||||||| || |||||||||| || | ||||| |||||||||| |||||||||| ||||||||| GTATTCTGAG TGAATTGGTT GAAGCTGTTT CTCTCTGTAT TTTGTACTCT TATATTTATA 352 GTGGATTGCT CATCTCCTTT GTGGACGTAG GTCGATTGAC CGAACCACGT TAAATCTTTG 88163 |||||||||| ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| GTGGATTGCT CATCTACTTT GTGGACGTAG GTTGATTGAC CGAACCACGT TAAATCTTTG 412 TGTCTTTTGA TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTT 88207 |||||||||| |||||||||| | || ||||| |||||||||| |||| TGTCTTTTGA TATATTTCTC GATGGCTTCT TACTCGTGGT CTTT 456 hqPGS_C08HBa0060C12.1+_SGN-E205773+ (87804 88207) ******************************************************************************** EST sequence 360 -strand 344 n (File: SGN-E206496-) 1 ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 61 GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 121 ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 181 ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT 241 TTACACCTGC TTATTTTTCG GTCCATGCAT TATACGTACG CCACCTATAG TTGTAAATTA 301 AGCCATTGCT TCTGCAGACA AAATATACAT AGCTCTACTT AGTT Predicted gene structure (within gDNA segment 87358 to 89820): Exon 1 87995 88257 ( 263 n); cDNA 1 264 ( 264 n); score: 0.945 MATCH C08HBa0060C12.1+ SGN-E206496- 0.945 263 0.765 C PGS_C08HBa0060C12.1+_SGN-E206496- (87995 88257) Alignment (genomic DNA sequence = upper lines): ATCTGTGGGT CACAAGCTTG ATATGTTATC ACTTGTGTGA ACCTCCCATG TATTCTAAGT 88054 || ||||||| |||||||||| ||| ||||| |||||||||| |||||||||| |||||| ||| ATTTGTGGGT CACAAGCTTG ATACGTTATT ACTTGTGTGA ACCTCCCATG TATTCTGAGT 60 GAATTGGTTG AGGTTGTTTC TCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 88114 |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| |||||||||| GAATTGGTTG AGATTGTTTC CCTCTGTATT TTGTACTCTC ATATTTATAG TGGATTGCTC 120 ATCTCCTTTG TGGACGTAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGAT 88174 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| | ATCTCCTTTG TGGACATAGG TCGATTGACC GAACCACGTT AAATCTTTGT GTCTTTTGGT 180 ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGAGGTT TGTATTGCTA GCTTCCGCGT 88234 |||||||||| |||||||||| |||||||||| |||||| ||| | ||||||| |||||||||| ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTCGATGTT AGCATTGCTA GCTTCCGCGT 240 TTACACTTGC TTA-TTTTCG GTCC 88257 |||||| ||| ||| |||||| |||| TTACACCTGC TTATTTTTCG GTCC 264 hqPGS_C08HBa0060C12.1+_SGN-E206496- (87995 88257) ******************************************************************************** EST sequence 380 -strand 349 n (File: SGN-E207598-) 1 TTGTGGGTCA CAAGCTTGAT ACGTTATTAC TTGTGTGACC CTCCCATGTA TTCTGAGTGA 61 ATTGGTTGAG ATTGTTTCCC TCTGTATTTT GTACTCTCAT ATTAATAGTG GATTGCTCAT 121 CTCCTTTGTG GACATAGGTC GATTGACCGA CCCACGTTAA ATCTTTGTGT CTTTTGGTAT 181 ATTTCTCGTT GTCTTCTAAC TCGTGGTCTT TCGATGTTAG CATTGCTAGC TTCCGCGTTT 241 ACACCTGCTT ATTTTTCGGT CCATGCATTA TACGTACGCC ACCTATAGTT GTAAATTAAG 301 CCATTGCTTC TGCAGACAAA ATATACATAG CTCTACTTAG TTTCTTTTC Predicted gene structure (within gDNA segment 87843 to 90778): Exon 1 87998 88258 ( 261 n); cDNA 2 263 ( 262 n); score: 0.929 Intron 1 88259 88569 ( 311 n); Pd: 0.000 (s: 0.85), Pa: 0.921 (s: 0) Exon 2 88570 88575 ( 6 n); cDNA 264 269 ( 6 n); score: 0.833 MATCH C08HBa0060C12.1+ SGN-E207598- 0.929 267 0.765 C PGS_C08HBa0060C12.1+_SGN-E207598- (87998 88258,88570 88575) Alignment (genomic DNA sequence = upper lines): TGTGGGTCAC AAGCTTGATA TGTTATCACT TGTGTGAACC TCCCATGTAT TCTAAGTGAA 88057 |||||||||| |||||||||| ||||| ||| ||||||| || |||||||||| ||| |||||| TGTGGGTCAC AAGCTTGATA CGTTATTACT TGTGTGACCC TCCCATGTAT TCTGAGTGAA 61 TTGGTTGAGG TTGTTTCTCT CTGTATTTTG TACTCTCATA TTTATAGTGG ATTGCTCATC 88117 ||||||||| ||||||| || |||||||||| |||||||||| || ||||||| |||||||||| TTGGTTGAGA TTGTTTCCCT CTGTATTTTG TACTCTCATA TTAATAGTGG ATTGCTCATC 121 TCCTTTGTGG ACGTAGGTCG ATTGACCGAA CCACGTTAAA TCTTTGTGTC TTTTGATATA 88177 |||||||||| || ||||||| ||||||||| |||||||||| |||||||||| ||||| |||| TCCTTTGTGG ACATAGGTCG ATTGACCGAC CCACGTTAAA TCTTTGTGTC TTTTGGTATA 181 TTTCTCGTTG TCTTCTTACT CGTGGTCTTT CGAGGTTTGT ATTGCTAGCT TCCGCGTTTA 88237 |||||||||| |||||| ||| |||||||||| ||| ||| | |||||||||| |||||||||| TTTCTCGTTG TCTTCTAACT CGTGGTCTTT CGATGTTAGC ATTGCTAGCT TCCGCGTTTA 241 CACTTGCTTA -TTTTCGGTC CTAACAAGTA TTTGTTGGGT TTTATTTGCC CTAAATTTCT 88296 ||| |||||| ||||||||| | CACCTGCTTA TTTTTCGGTC CA........ .......... .......... .......... 263 TACCATAAAT AGGTTTTCCT TGTAGGAAAA GATTTTGGAT TGACTAATCC TTTTCTTGTA 88356 .......... .......... .......... .......... .......... .......... 263 GGAAAAGGTT TAGGACTCTA TAAATAGAGG CATGTTCCTT CTAACTTAAT CAACATATCA 88416 .......... .......... .......... .......... .......... .......... 263 CAAAGTAGTC TTAAAAGCTT TGAGAGTTTT GGTTAGAGGG AGAATCTGTG GGTCACAAGC 88476 .......... .......... .......... .......... .......... .......... 263 TTGATATGTT ATCACTTGTG TGAACCTCCC ATGTATTCTG AGTGAATTGG TTGAGGTTGT 88536 .......... .......... .......... .......... .......... .......... 263 TTCTCTCTGT ATTTTGTACT CTCATATTTA TAGTGGATT 88575 || ||| .......... .......... .......... ...TGCATT 269 hqPGS_C08HBa0060C12.1+_SGN-E207598- (87998 88258) ******************************************************************************** EST sequence 340 -strand 667 n (File: SGN-E389613-) 1 CTCATATTAC TAATAGGTAA TCATTGCAAC TAATTTGGAT GAGTACAAGA ATGTTTCTAA 61 CAAATTATTA TCATGTTCTA TTTTGCTTTT ATTCTGCCTG TTCTATTATA ACTTTTAACT 121 GATCATGAAT GTACATTCCT CCTGTGATTT GCACATACAT AATGCGTTGA GGTATGAGTC 181 ACAAGCTTCT TGATACGTTA TCACTTGTGT GAATCTCTCA TGTATTCTGA GTGAATTTGG 241 TTGAGGTTGT TTCTCTCTGT ATTTTGTATT CTCATATTTA TAATGGATTG CTCATCTCCT 301 TTGTGGACGT AGGTCAATTG ACCGAACCAC GTTAAATCTC TGTATCTTTT GGTATATTTC 361 TCGTTGTCTT CTTACTCGTG GTCTTTTGAG GTTTGCTTTG CTAGCTTCCG CGTTTACACC 421 TGCTTATTTT TGGTCCTAAC ACCGTCAAGG TTCCATTGAC TCATTACTAT CAGGTTATGG 481 ATTTGTGATG GTGGAAGGTA GCAGGTACGC GTTGCATGCA AGCTATCTCA TTTCATATTG 541 TGGGGCAAAA TTAATTAGGT ATATAAGTTA GTGCTGCCAA AGGCAAAAAA GGATCTGTAA 601 CTAAATACTT TTACCAATGG TCCAATGCTA AGGATCTATG GCTGGATTTG GAGATTGCAG 661 TAATGTA Predicted gene structure (within gDNA segment 85914 to 92682): Exon 1 88011 88262 ( 252 n); cDNA 189 441 ( 253 n); score: 0.931 MATCH C08HBa0060C12.1+ SGN-E389613- 0.931 252 0.378 C PGS_C08HBa0060C12.1+_SGN-E389613- (88011 88262) Alignment (genomic DNA sequence = upper lines): CTTGATATGT TATCACTTGT GTGAACCTCC CATGTATTCT AAGTGAA-TT GGTTGAGGTT 88069 ||||||| || |||||||||| ||||| ||| |||||||||| |||||| || |||||||||| CTTGATACGT TATCACTTGT GTGAATCTCT CATGTATTCT GAGTGAATTT GGTTGAGGTT 248 GTTTCTCTCT GTATTTTGTA CTCTCATATT TATAGTGGAT TGCTCATCTC CTTTGTGGAC 88129 |||||||||| |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| GTTTCTCTCT GTATTTTGTA TTCTCATATT TATAATGGAT TGCTCATCTC CTTTGTGGAC 308 GTAGGTCGAT TGACCGAACC ACGTTAAATC TTTGTGTCTT TTGATATATT TCTCGTTGTC 88189 ||||||| || |||||||||| |||||||||| | ||| |||| ||| |||||| |||||||||| GTAGGTCAAT TGACCGAACC ACGTTAAATC TCTGTATCTT TTGGTATATT TCTCGTTGTC 368 TTCTTACTCG TGGTCTTTCG AGGTTTGTAT TGCTAGCTTC CGCGTTTACA CTTGCTTATT 88249 |||||||||| |||||||| | ||||||| | |||||||||| |||||||||| | |||||||| TTCTTACTCG TGGTCTTTTG AGGTTTGCTT TGCTAGCTTC CGCGTTTACA CCTGCTTATT 428 TTCGGTCCTA ACA 88262 || ||||||| ||| TTTGGTCCTA ACA 441 hqPGS_C08HBa0060C12.1+_SGN-E389613- (88011 88262) ******************************************************************************** EST sequence 286 -strand 302 n (File: SGN-E370622-) 1 CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 61 ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 121 TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GGTTTGCGTT 181 GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGGTCCTAA CATTATCCAC CGAGTTTAGA 241 AGGTTGTGAT TAGTCCAAAG GGGCGGGTCA TAGGCATATT TCTAGGTTAT CAAAAAAAAA 301 AA Predicted gene structure (within gDNA segment 87332 to 89662): Exon 1 88041 88262 ( 222 n); cDNA 1 222 ( 222 n); score: 0.955 PPA cDNA 292 302 MATCH C08HBa0060C12.1+ SGN-E370622- 0.955 222 0.735 C PGS_C08HBa0060C12.1+_SGN-E370622- (88041 88262) Alignment (genomic DNA sequence = upper lines): CATGTATTCT AAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 88100 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTATTCC GAGTGAATTG GTTGAGGTTG TTTCTCTCTG TATTTTGTAC TCTCATATTT 60 ATAGTGGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 88160 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTAGATT GCTCATCTCC TTTGTGGACG TAGGTCGATT GACCGAACCA CGTTAAATCT 120 TTGTGTCTTT TGATATATTT CTCGTTGTCT TCTTACTCGT GGTCTTTCGA GGTTTGTATT 88220 |||||||||| || ||||||| ||||||||| |||||||||| ||| ||| || |||||| || TTGTGTCTTT TGGTATATTT CTCGTTGTCG TCTTACTCGT GGTATTTTGA GGTTTGCGTT 180 GCTAGCTTCC GCGTTTACAC TTGCTTATTT TCGGTCCTAA CA 88262 |||||||||| |||||||||| ||||||||| |||||||||| || GCTAGCTTCC GCGTTTACAC CTGCTTATTT TCGGTCCTAA CA 222 hqPGS_C08HBa0060C12.1+_SGN-E370622- (88041 88262) ******************************************************************************** EST sequence 260 +strand 641 n (File: SGN-E301078+) 1 CCTTTTAGGG TGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAAACT GGTGTCTTGG TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGATATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATGATTTA TTGTCGTATG TCTTTGAATT 601 TTGTAATTGT TACATTTTAT TATTCATTAC AATTTACATA T Predicted gene structure (within gDNA segment 89966 to 98252): Exon 1 90665 90878 ( 214 n); cDNA 1 214 ( 214 n); score: 0.879 Intron 1 90879 92314 (1436 n); Pd: 0.000 (s: 0.80), Pa: 0.121 (s: 0) Exon 2 92315 92349 ( 35 n); cDNA 215 249 ( 35 n); score: 0.600 Intron 2 92350 92416 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 92417 92450 ( 34 n); cDNA 250 283 ( 34 n); score: 0.618 Intron 3 92451 92548 ( 98 n); Pd: 0.089 (s: 0), Pa: 0.000 (s: 0) Exon 4 92549 92582 ( 34 n); cDNA 284 314 ( 31 n); score: 0.706 Intron 4 92583 93154 ( 572 n); Pd: 0.000 (s: 0), Pa: 0.645 (s: 0) Exon 5 93155 93173 ( 19 n); cDNA 315 333 ( 19 n); score: 0.579 Intron 5 93174 93203 ( 30 n); Pd: 0.935 (s: 0), Pa: 0.000 (s: 0.56) ?? Exon 6 93204 93286 ( 83 n); cDNA 334 413 ( 80 n); score: 0.554 Intron 6 93287 94387 (1101 n); Pd: 0.893 (s: 0.56), Pa: 0.999 (s: 0) Exon 7 94388 94399 ( 12 n); cDNA 414 425 ( 12 n); score: 0.750 Intron 7 94400 95276 ( 877 n); Pd: 0.000 (s: 0), Pa: 0.413 (s: 0) Exon 8 95277 95297 ( 21 n); cDNA 426 446 ( 21 n); score: 0.595 Intron 8 95298 96670 (1373 n); Pd: 0.354 (s: 0), Pa: 0.838 (s: 0) Exon 9 96671 96678 ( 8 n); cDNA 447 454 ( 8 n); score: 0.750 Intron 9 96679 96950 ( 272 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 10 96951 96987 ( 37 n); cDNA 455 491 ( 37 n); score: 0.703 Intron 10 96988 97256 ( 269 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66) Exon 11 97257 97309 ( 53 n); cDNA 492 542 ( 51 n); score: 0.660 MATCH C08HBa0060C12.1+ SGN-E301078+ 0.769 550 0.858 C PGS_C08HBa0060C12.1+_SGN-E301078+ (90665 90878,92315 92349,92417 92450,92549 92582,93155 93173,93204 93286,94388 94399,95277 95297,96671 96678,96951 96987,97257 97309) Alignment (genomic DNA sequence = upper lines): CCTTTTAGGG CGTAGCTTAG CACTATATAT AGATGTTATG GCAAACCCTA TTCTGTAATT 90724 |||||||||| ||||||||| |||||||||| ||| | |||| |||||||||| |||||||||| CCTTTTAGGG TGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 60 CTGTTTTTTG CCTCTCCATA ATAAAACTGC TCCCCCTCTT CCTGTGGACG TAGCCAATTT 90784 ||| |||||| |||||||||| |||||| ||| |||| ||||| || ||||||| |||||||||| CTG-TTTTTG CCTCTCCATA ATAAAATTGC TCCCTCTCTT CCCGTGGACG TAGCCAATTT 119 ATTGGTGAAC CACGTAAATC TGTTGTCTTG TTTTTCGC-A TT-TATATTT TCTCGTATTA 90842 |||||||||| |||||||| | || ||||||| ||||||| || ||||||| |||||||||| ATTGGTGAAC CACGTAAAAC TGGTGTCTTG GTTTTCGCGT TTATATATTT TCTCGTATTA 179 TCTCGAATTC CTCATAACAT ACTTGTATAG TCAGAAGGGT TTACCAATGA ATGTTAGTGA 90902 |||| |||| | || |||| ||| ||| ||| || TCTCAAATTT CGCACAACAC TCTT-AATAT TCATAA.... .......... .......... 214 ACAGACGTTT TTGACTATTC TTAATGTGAT GACAAGCATG TTATGGGGTG GCACAGTGAA 90962 .......... .......... .......... .......... .......... .......... 214 GGGTGAGGAA AGAGCTAGCG TTGGAGCTGA GTTTAGGCAT GTTGTGACTG GGATAGCTCA 91022 .......... .......... .......... .......... .......... .......... 214 GTTGGTCAGT ATTCCCAATC TTACCGATTT TTACCCGGGC TTGGCCTGGT TTGATTTCCA 91082 .......... .......... .......... .......... .......... .......... 214 AGGTATTACA AAGAAGATGA AGGTGTTGGC AAAGAGATTT GATAAGATAT TTGAGGGAAT 91142 .......... .......... .......... .......... .......... .......... 214 AATTGATCAA AGACAAAAAT TGGACAGAAA TGGTGTTGGC CAAGATAGCA AAGACTTTTT 91202 .......... .......... .......... .......... .......... .......... 214 TGCAAGTTTT GTTAAAGTTG AAAGATGAAG CAGATCCCAA AATACCTCTG ACCATGACTG 91262 .......... .......... .......... .......... .......... .......... 214 ACATCAAAGC CTTACTTATG GTATGTTTTA TCAGTTGTTC ATTCTACTAA ATTTTCTTTT 91322 .......... .......... .......... .......... .......... .......... 214 TCCAGAAATT GGCATATAGT GATATAAGTC ATAATAAGAT GATTGTAAAT GTATTGAAGA 91382 .......... .......... .......... .......... .......... .......... 214 ATTATTGTTA GTAATAAATA TATTCATGTC CTGAACTGTT AGTAGTTACC ATGTTATTGG 91442 .......... .......... .......... .......... .......... .......... 214 ACTGCATTAA AGAAAGAGTC GGCAAATTTA GCATCAGATT ATATGTGAAG ACTTAACTGT 91502 .......... .......... .......... .......... .......... .......... 214 GAATTAAGAC TCTGAACTTT GAACTGAACT CCAATATACA GTTTTACAGT TAAAAAATTG 91562 .......... .......... .......... .......... .......... .......... 214 TTGAATATGA TAATAACTTC ACATCTACTA TGGACAGGAA ATGGTTCTCG GTGGAACTGG 91622 .......... .......... .......... .......... .......... .......... 214 CTCAACCTCC AATACGATTG AGTTTGCCAT GGCTGAAATT ATGAACAAAC CAGATGTCCT 91682 .......... .......... .......... .......... .......... .......... 214 GAGAAAATTA CAACAAGAAG TAGATACAGT TGTGGGAAAA GATAATATTG TAGAAGAGTC 91742 .......... .......... .......... .......... .......... .......... 214 TCATATTCAG CAATTACCAT GTATCTATGC AGTGATGAAA GAAGTATTGC GCATGCATCC 91802 .......... .......... .......... .......... .......... .......... 214 AGCTACTCCA CTATTGGTGC CACATTGTCC AAGTGAGACA GTCACTGTTG GAGGATACAC 91862 .......... .......... .......... .......... .......... .......... 214 TGTTCCTGAA GGATCTCGTG TTTTCATAAA TGTTTGGGCT ATACAGAGAG ATACTTCTAT 91922 .......... .......... .......... .......... .......... .......... 214 CTGGAAAAGT CCAACAGAGT TCTGTCCAGA GAGATTTTTG GAAAATAAAT GGGACTATAG 91982 .......... .......... .......... .......... .......... .......... 214 TGAAAATGAT TTCAACTATT TCCCATTTGG TTCTGGAAGA AGAATCTGTG CGGGGATAGC 92042 .......... .......... .......... .......... .......... .......... 214 CATGGCAGAC AGGATGTTCA CGTATTCACT GGCTTCGATC ATTCATTCTT TCGACTGGAA 92102 .......... .......... .......... .......... .......... .......... 214 ATTGCCCCAA GGAGAAACAT TGGACGTTAC GGAGAAGTTC AGTAGTATTT TGAAGAAGAA 92162 .......... .......... .......... .......... .......... .......... 214 AATACCTCTG GTGGCTTTAC CTACTCCAAG ATAGTCCAAT TCAACACTGT ATGAGTAAGA 92222 .......... .......... .......... .......... .......... .......... 214 TAAAAATGTG TTAGTAGAGA GCCGTGTTCT GTATGATGAT TTTATCTTTT GTATTATGAA 92282 .......... .......... .......... .......... .......... .......... 214 TTATAAAAAC GGGATCCACT ATATAAATAA AGATATAAAA TATCGAGAGA AATAACCTCA 92342 ||| | | | | | |||||||| .......... .......... .......... ..CTATCATC TTTTCATATT CATAACCTCC 242 CAAAATTAGC TCAACTTAAA AAGAGGCTCA CACTAGTGAT AAAGTACCAC TTGTGTCTCA 92402 || ||| AAATATT... .......... .......... .......... .......... .......... 249 CAAAAATCTC TCCCTAAATA AAACTCTCAG AGCCCTTAGG ATTATATTGT AAATTCTACC 92462 ||||| ||||| | || | ||| | | | | .......... ....TAAATT AAACTTTAAG ATATCTTTTG GTATTCCT.. .......... 283 AAGTTAGAAG TAATGAGCCT CTTTTTATAG AACTAGCTTT GAGAACGTGC TTTGCATGTT 92522 .......... .......... .......... .......... .......... .......... 283 TATTCCAAAA ACTTAAATTG TAAATATAAA TTTTATATAG TATATTATAT CACTTTCTTT 92582 | | || ||| | | |||| || | || |||||| .......... .......... ......TCTA TTCTAT-TTG TATA-AAT-T CAACTTCTTT 314 GTGCTGTGGA CTAAAAATGA TAACGTATAA AAAGAACAAA AACTAAGTTA TAGAGTCATT 92642 .......... .......... .......... .......... .......... .......... 314 TTAGTCTAGC AATGCTTACC TTAACATATA TACTTAATTG GTTGTAACTC AACTATATCA 92702 .......... .......... .......... .......... .......... .......... 314 AGATCTCTTG AAACTTATCA GTTATCTTAC AACAACATAT ATACAAAGAT TTTATGATGA 92762 .......... .......... .......... .......... .......... .......... 314 TGCTAAAATT TTGTACGAAG TTACCTAACA TATCATTGAT TTGGTCCTCT AAGTTTTTAA 92822 .......... .......... .......... .......... .......... .......... 314 AGTTACAAGA GTGACATTTA TGACATAGTT TTTATCCATA ATATCATAAT CAACTAGATA 92882 .......... .......... .......... .......... .......... .......... 314 ATTAACTGAT CACTGTGTTA CGAAGACCAT GAGTCCATGA CTTTTTTGGG ATCACTGATT 92942 .......... .......... .......... .......... .......... .......... 314 AGCTAGAGTC ATTATAGCAT CCAATAAGAA GTATATTTAA CAACAACTAT TAATTTTATA 93002 .......... .......... .......... .......... .......... .......... 314 GTATGTACAT AACTTTCTGA GATGAGGAAG TTTGAGCAAA AAAAAAATTT AAGCAATTTC 93062 .......... .......... .......... .......... .......... .......... 314 ACGCTTGATG TTAAAAGCAG TGTGAATCAC TTCAATAATT AAACTGTCTT CCTGCAAAAC 93122 .......... .......... .......... .......... .......... .......... 314 ATGGCTTCAA ACTTCTAAAA CATGTCTTGC AGCTCTCCTG ACAGTTCAAT GGTACAAATA 93182 |||| || | | | || .......... .......... .......... ..ATCTCATG AAACCCCTAT C......... 333 AATGAACATC AAATTCTCCA ATACGTTAGC ATGTTTGATA GATTCTAATA GTTAAATAAT 93242 | ||| || ||| | || ||| | || || | .......... .......... .AAGATTATT ATTTTTATTC TATAGTAA-A AATAGATGCT 371 GAAATAACTC TAAATATTTG TGCAATGATC AGAGGCGGAG CTAGGTGAGC GTTTGTGTGT 93302 |||| || | ||| || | || || | ||| | | || GAAAACTCT- TGAATTTTGA TAGGAT-ATG AAAGGAGTCG ATAA...... .......... 413 TTGGACGAAT TCACTAGCTA TTTTGTGTAT CCTGTAATAG CTCAGTGGTA ATGTATATCC 93362 .......... .......... .......... .......... .......... .......... 413 TGTAATAGCT CAGTGGTAAG GAAGGGGACG TAGATATGTC TTTTACACTA GTGTTGTGGG 93422 .......... .......... .......... .......... .......... .......... 413 TTCAAACTCT ATCATCAATT TTATATCCAA AAATTTAGAA CCTCAAACTC TTAATTTTGA 93482 .......... .......... .......... .......... .......... .......... 413 CTCCACCTCT GAATTAATGA TAGTTCAATT TCTTTTCCTC TCCTAATTCC GACTCCGCTC 93542 .......... .......... .......... .......... .......... .......... 413 TAAACTTATG ATAGTTCAAT TTCTTAGTCA TTCACCTGTG ATTCCTTTAA AAAAAATTGA 93602 .......... .......... .......... .......... .......... .......... 413 AAGTTTGGTT TTGTTAACTA TTCGTCAACA CAGTTAACAG TATGGATTTA TCTTCATTCT 93662 .......... .......... .......... .......... .......... .......... 413 AAATATCTCA TTCCTTCTGT TAATTAGTCT TATACTAATT TTTTTCTCCA GCTTTTTCAA 93722 .......... .......... .......... .......... .......... .......... 413 AATAGGAGTC TAGATCACTT GTTATCTAAA TTATTAAATT GATTCTATTA GGATTAGAAG 93782 .......... .......... .......... .......... .......... .......... 413 TAGTTTTAAG GCGACTAATT TTGAATATTC AGATCAATTA GGTTTCTTAG CACTTTTATC 93842 .......... .......... .......... .......... .......... .......... 413 CTCAAATTTT ATAATCTATC AATTTCTGTC TTCAATCTTT ATAATTTTGC CTGAACATTA 93902 .......... .......... .......... .......... .......... .......... 413 TTTTTTTTTG TTTATTCAAG TAACCCTGTA AAAAAAAAAT TATATGGTGT TAACTAGATG 93962 .......... .......... .......... .......... .......... .......... 413 AAGGGCATCT GATTGGATAT TTGAGGGCCA TGATTGTGAA AGAGGTCAAA TTTTGCTGGG 94022 .......... .......... .......... .......... .......... .......... 413 GATATATCCA AAAAAAGAAA CGATTTTTTT GCTGAATTTG ACTGATCACA AAATGCCAAA 94082 .......... .......... .......... .......... .......... .......... 413 CAAATTTTGC TCCTTTCCAC GTTTCTTCTG ATACTAAACA AACTACTTTT TCCGTTTCAA 94142 .......... .......... .......... .......... .......... .......... 413 TTAACATCAC GAGATTCAAG GGGTGACTCT GCTTCGTTTT TATCTATTTA TATTCATCTC 94202 .......... .......... .......... .......... .......... .......... 413 ATTCCTTCAG CAAAATCAAA AAAAAAAAAA CTTTTAGCTG TGCAAAAGCT TCAGATGTCT 94262 .......... .......... .......... .......... .......... .......... 413 CTCAAATTCT TCAAACCCCT TTTTGATTCT TTTCCATGGC CCCTACAACA ACTCAATGTT 94322 .......... .......... .......... .......... .......... .......... 413 GAGCAAAAGG GTGTGTTTTT CTCCTGTTTT CTTGGGTTCT TAGCTTTACT TTGGTGTTTC 94382 .......... .......... .......... .......... .......... .......... 413 ATCAGAAACT CAAACAAGGG ATTGCCACCA GGGCCTGAAG CTTTGCCCTT GATAGGTAAT 94442 ||||| || | | .....AAACT CAGAGAG... .......... .......... .......... .......... 425 CTCCATTCTC TTGATCCTGA ACTTCACACC TATTTTGCAT CTCTGTCCAA AACATATGGC 94502 .......... .......... .......... .......... .......... .......... 425 CCCATTTGTA GAATCTGGCT TGGTAAAAAA ATTGGGATTA TTATTAGTTC GCCTGCTTTA 94562 .......... .......... .......... .......... .......... .......... 425 GCTCGCGAGG TTCTTAAGGA TAAAGATACT ATTTTTGCAA ACAGAGATGT GTCTGCTGCT 94622 .......... .......... .......... .......... .......... .......... 425 GGAAGAGAAT TTTCATATGG TATCAATGAC TTACTTTGGA GTCCTTATGG ACCGAAATGG 94682 .......... .......... .......... .......... .......... .......... 425 CGAATGTTGA GGAAGCTTTG TGTTCGCGAT ATGCTTAGTT CTTCTAGTAT AGATTCTGTT 94742 .......... .......... .......... .......... .......... .......... 425 TATGGACTAA GGAGAAGGGA GCTTAGACAA TCGATCAATT ACTTGTATAG TCAGAAGGGT 94802 .......... .......... .......... .......... .......... .......... 425 TTACCAGTGA ATATCGGTGA ACAGATGTTC TTGACTTTGC TTAATGTGAT AACAAGTATG 94862 .......... .......... .......... .......... .......... .......... 425 TTATGGGGTG GGACGATGAA GGGTGAGGAA AGAGCTAGTC TTGGAGCTGA GTTTAGGAAT 94922 .......... .......... .......... .......... .......... .......... 425 GTTGTAACTG AGATAGTTGA TTTGGTCAGT ATTCCCAATC TTTCCGATTT TTACCCGGGC 94982 .......... .......... .......... .......... .......... .......... 425 TTGACCTGGT TTGATTTCCA GGGTGTTATA AAGAAGATGA AAGTGGTTCT AAAAAGATTT 95042 .......... .......... .......... .......... .......... .......... 425 GATAAGCTAT TTGAAAGCAT GATTGATCAA AGACAAAAAT TGGACAGAAA TGGAGTTGGC 95102 .......... .......... .......... .......... .......... .......... 425 CGAGAAAGCA AAAACTTTTT GCAAGTTCTG CTGAAGTTGA AAGATGTAGC AGATGCCAAA 95162 .......... .......... .......... .......... .......... .......... 425 ATGCCTCTGA CCATGACTGA AATCAAAGCC TTACTTATGG TATGTTTATC ATTTGTGCAT 95222 .......... .......... .......... .......... .......... .......... 425 TCTACTAGAT TTGTTTTATC CATATGAACC AAAAAGAAAT CTTCCTCTCC CCAGTTAT-C 95281 |||| .......... .......... .......... .......... .......... ....TTATGT 431 ACTGCATTAT TATTGAGTAG CCAAGATGCA ACCATTCATA CCTTATCTAT ATGGATTATT 95341 ||| ||| | || | | ACT-AATTTT TACTTA.... .......... .......... .......... .......... 446 TATTAGCTTA CAAAGTTACA CTGATCATGA TGGCAGATCT TTTTTTTTTA ATATTATTGA 95401 .......... .......... .......... .......... .......... .......... 446 ACAATTATAG TGTAATAAAT ATTAGATTCG TATATTCATT TTCTGAACTG TAAGTTGCTA 95461 .......... .......... .......... .......... .......... .......... 446 CCATGTTAAT GGACTGACTT AAGGATAGAG TCGGCAAATT TAGCATCATC AGATAATATG 95521 .......... .......... .......... .......... .......... .......... 446 TGAAGACTTA ACTGTGAATT ATGACCGAGT ACCTTGAACT GAACTCCAAT GTACAGTTCT 95581 .......... .......... .......... .......... .......... .......... 446 ACGAATAAAA ACTTGTTGTA CATGATACTA AATTCACAAA TACTATGGAC AGGATATGGT 95641 .......... .......... .......... .......... .......... .......... 446 TGTCGCTGGA ACTGACACAA CCTCCAACGC GGTTGAGTTT GCCCTGGCTG AAATTTTGAA 95701 .......... .......... .......... .......... .......... .......... 446 CAAACCAGAC GTCCTGAGGA AAGTACAACA AGAAGTAGAT ACAGTTGTGG GAAAAGATAA 95761 .......... .......... .......... .......... .......... .......... 446 TATAGTAGAA GAGTCTCATA TTCAACAGTT ACCGTATCTC TATGCAGTGA TGAAAGAAGC 95821 .......... .......... .......... .......... .......... .......... 446 GATGCGCATG CATCCAGCCC TCCCACTCTT GGCTCCTCAT TCTCCTAGTG AGACAGTCAC 95881 .......... .......... .......... .......... .......... .......... 446 TGTTGGAGGA TATACTGTTC CTAAAGGATC TTGTATTTTC GTAAATGTAT GGGCTATACA 95941 .......... .......... .......... .......... .......... .......... 446 CAGAGATCCT TCTATCTGGA AAAATCCAAC AGAGTTCCGT CCTGAGAGAT TTTTGGACAA 96001 .......... .......... .......... .......... .......... .......... 446 TAAATGGGAT TATAGTGGTA ATGACTTCAA CTATTTCCCA TTTGGTTCTG GAAGAAGAAT 96061 .......... .......... .......... .......... .......... .......... 446 GTGTGCGGGG ACAGCCATGG CAGAGAGGAT GTTCATGTAT TCATTGGCTT CGCTCATCCA 96121 .......... .......... .......... .......... .......... .......... 446 TTCTTTCGAT TGGAAATTAC CCGAAGGAGA GACGTTAGAC CTTAAAGAGA AGTTTGGTAT 96181 .......... .......... .......... .......... .......... .......... 446 TACTTTGAAG AAGAAAATAC CTCTGGTGGC TATACCTACT CCAAGATTAT GCAATCCAAC 96241 .......... .......... .......... .......... .......... .......... 446 ATTGTATGAG TAAGATTTTA AAGAAAAAAA AAGTATCAGT GTTAAGTGTT ATGTGCTAAT 96301 .......... .......... .......... .......... .......... .......... 446 GTGTAAGTAT CAGTGTTATG TGCTAATGTC TTTCAAAGAC TAATATTAAT GAGCATTGAA 96361 .......... .......... .......... .......... .......... .......... 446 TAATTCTAAG TTTCCTACTT ATAGATAATG AGTGATCTTT TCTTCTAATT ATGACCGAAA 96421 .......... .......... .......... .......... .......... .......... 446 TAACTTAATA TCATGCTTTA TGATGATGCT AAAATTTTGG ACTAAGTTAT CTAACATAAT 96481 .......... .......... .......... .......... .......... .......... 446 TAAAAAAGTT GATTCCCTGA GTCTTCATGG TTCATCTTCA TTAATGAGTG GTCGTTTTGT 96541 .......... .......... .......... .......... .......... .......... 446 GTCTTTATCA TCTCTTTTCT CATAAATTTC TATATTTATA GTAGTAAACA ATGACTTTTT 96601 .......... .......... .......... .......... .......... .......... 446 ATATGTATTT TGATAGTTAT CACATGAATT TTGTTTATGT TATTTAACAA AATAATATAT 96661 .......... .......... .......... .......... .......... .......... 446 TGAATGCAGG TTTTTAAATT CTTCTCTTTT ATGTACGGAT AAAAGAAAGT TATAGGAATT 96721 ||||| | .........T TTTTTCA... .......... .......... .......... .......... 454 AAAAAATGTA ATTGAAGTCG TATAGGTGTA GATTTATGGA TAAATTATGG GTTAAGGCTA 96781 .......... .......... .......... .......... .......... .......... 454 TAAAATAAAT TAACTACACT TAAATGACAA TAATTCCAAT AGATTAATAC ACCATTACAT 96841 .......... .......... .......... .......... .......... .......... 454 ATTTTCTTAA TGACTATTCC AGTAGGTCAT ACAAACTTAT AATGTTATAA ATAATAAATA 96901 .......... .......... .......... .......... .......... .......... 454 CTAATTATTT AGAATATTAT CTTTGTCTAG AATTTTTTAT CACAATAAGT CATTATTAAA 96961 | | ||| | .......... .......... .......... .......... .........T CTATATATAC 465 ATCAATTTTA TCAAAATAAT ATATTTTTCA AAATTTTACA AAATTAGTAT AAATGTATTT 97021 |||||| ||| | | |||||| | | | ATCAATCTTA TAAGAATAAT GTCTAT.... .......... .......... .......... 491 TTCAGTAACG TCTTAGGTTA TATTTTATTA AAAAAAATTA AATTACAAAA AAAATAAAGA 97081 .......... .......... .......... .......... .......... .......... 491 TATGACAAAA TAAATAGACA TATAACATTA TTGTCACTGA CGTTTTATAA TTCGTTACTC 97141 .......... .......... .......... .......... .......... .......... 491 GAAGGCATGT TTTCCTTTTC ATACATAAAC AATACTTTTG CAAGAAAAAC GAGAGTGAGG 97201 .......... .......... .......... .......... .......... .......... 491 AAGGCTTTAC CACAATATCA ATTAATTCCT TTGTTTCTTC TGTAATGATG TAGCCATTAT 97261 ||| | .......... .......... .......... .......... .......... .....ATTGT 496 ATTTTTTTTA ATAGTTATTT TGCTTAGTTG TTGCATCTGT TTTAATTC 97309 | ||||||| || |||| || || || | | | | | ||| | || A-TTTTTTTC TTAAATATTC TG-TTTCTTT TAGTCTTTTT TTTCACTC 542 hqPGS_C08HBa0060C12.1+_SGN-E301078+ (90665 90878,92315 92349,92417 92450,92549 92582,93155 93173,93204 93286,94388 94399,95277 95297,96671 96678,96951 96987) ******************************************************************************** EST sequence 262 +strand 575 n (File: SGN-E301194+) 1 CCTTTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGAAATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATG Predicted gene structure (within gDNA segment 90065 to 97776): Exon 1 90665 90878 ( 214 n); cDNA 1 214 ( 214 n); score: 0.897 Intron 1 90879 92314 (1436 n); Pd: 0.000 (s: 0.80), Pa: 0.121 (s: 0) Exon 2 92315 92349 ( 35 n); cDNA 215 249 ( 35 n); score: 0.600 Intron 2 92350 92416 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 92417 92450 ( 34 n); cDNA 250 283 ( 34 n); score: 0.618 Intron 3 92451 92548 ( 98 n); Pd: 0.089 (s: 0), Pa: 0.000 (s: 0) Exon 4 92549 92582 ( 34 n); cDNA 284 314 ( 31 n); score: 0.706 Intron 4 92583 93154 ( 572 n); Pd: 0.000 (s: 0), Pa: 0.645 (s: 0) Exon 5 93155 93173 ( 19 n); cDNA 315 333 ( 19 n); score: 0.579 Intron 5 93174 93203 ( 30 n); Pd: 0.935 (s: 0), Pa: 0.000 (s: 0.56) ?? Exon 6 93204 93286 ( 83 n); cDNA 334 413 ( 80 n); score: 0.554 Intron 6 93287 94387 (1101 n); Pd: 0.893 (s: 0.56), Pa: 0.999 (s: 0) Exon 7 94388 94399 ( 12 n); cDNA 414 425 ( 12 n); score: 0.750 Intron 7 94400 95276 ( 877 n); Pd: 0.000 (s: 0), Pa: 0.413 (s: 0) Exon 8 95277 95297 ( 21 n); cDNA 426 446 ( 21 n); score: 0.595 Intron 8 95298 96670 (1373 n); Pd: 0.354 (s: 0), Pa: 0.838 (s: 0) Exon 9 96671 96678 ( 8 n); cDNA 447 454 ( 8 n); score: 0.750 Intron 9 96679 96950 ( 272 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 10 96951 96981 ( 31 n); cDNA 455 485 ( 31 n); score: 0.742 MATCH C08HBa0060C12.1+ SGN-E301194+ 0.801 491 0.854 C PGS_C08HBa0060C12.1+_SGN-E301194+ (90665 90878,92315 92349,92417 92450,92549 92582,93155 93173,93204 93286,94388 94399,95277 95297,96671 96678,96951 96981) Alignment (genomic DNA sequence = upper lines): CCTTTTAGGG CGTAGCTTAG CACTATATAT AGATGTTATG GCAAACCCTA TTCTGTAATT 90724 |||||||||| |||||||||| |||||||||| ||| | |||| |||||||||| |||||||||| CCTTTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 60 CTGTTTTTTG CCTCTCCATA ATAAAACTGC TCCCCCTCTT CCTGTGGACG TAGCCAATTT 90784 ||| |||||| |||||||||| |||||| ||| |||| ||||| || ||||||| |||||||||| CTG-TTTTTG CCTCTCCATA ATAAAATTGC TCCCTCTCTT CCCGTGGACG TAGCCAATTT 119 ATTGGTGAAC CACGTAAATC TGTTGTCTTG TTTTTCGC-A TT-TATATTT TCTCGTATTA 90842 |||||||||| |||||||||| |||||||||| |||||||| || ||||||| |||||||||| ATTGGTGAAC CACGTAAATC TGTTGTCTTG TTTTTCGCGT TTATATATTT TCTCGTATTA 179 TCTCGAATTC CTCATAACAT ACTTGTATAG TCAGAAGGGT TTACCAATGA ATGTTAGTGA 90902 |||| |||| | || |||| ||| ||| ||| || TCTCAAATTT CGCACAACAC TCTT-AATAT TCATAA.... .......... .......... 214 ACAGACGTTT TTGACTATTC TTAATGTGAT GACAAGCATG TTATGGGGTG GCACAGTGAA 90962 .......... .......... .......... .......... .......... .......... 214 GGGTGAGGAA AGAGCTAGCG TTGGAGCTGA GTTTAGGCAT GTTGTGACTG GGATAGCTCA 91022 .......... .......... .......... .......... .......... .......... 214 GTTGGTCAGT ATTCCCAATC TTACCGATTT TTACCCGGGC TTGGCCTGGT TTGATTTCCA 91082 .......... .......... .......... .......... .......... .......... 214 AGGTATTACA AAGAAGATGA AGGTGTTGGC AAAGAGATTT GATAAGATAT TTGAGGGAAT 91142 .......... .......... .......... .......... .......... .......... 214 AATTGATCAA AGACAAAAAT TGGACAGAAA TGGTGTTGGC CAAGATAGCA AAGACTTTTT 91202 .......... .......... .......... .......... .......... .......... 214 TGCAAGTTTT GTTAAAGTTG AAAGATGAAG CAGATCCCAA AATACCTCTG ACCATGACTG 91262 .......... .......... .......... .......... .......... .......... 214 ACATCAAAGC CTTACTTATG GTATGTTTTA TCAGTTGTTC ATTCTACTAA ATTTTCTTTT 91322 .......... .......... .......... .......... .......... .......... 214 TCCAGAAATT GGCATATAGT GATATAAGTC ATAATAAGAT GATTGTAAAT GTATTGAAGA 91382 .......... .......... .......... .......... .......... .......... 214 ATTATTGTTA GTAATAAATA TATTCATGTC CTGAACTGTT AGTAGTTACC ATGTTATTGG 91442 .......... .......... .......... .......... .......... .......... 214 ACTGCATTAA AGAAAGAGTC GGCAAATTTA GCATCAGATT ATATGTGAAG ACTTAACTGT 91502 .......... .......... .......... .......... .......... .......... 214 GAATTAAGAC TCTGAACTTT GAACTGAACT CCAATATACA GTTTTACAGT TAAAAAATTG 91562 .......... .......... .......... .......... .......... .......... 214 TTGAATATGA TAATAACTTC ACATCTACTA TGGACAGGAA ATGGTTCTCG GTGGAACTGG 91622 .......... .......... .......... .......... .......... .......... 214 CTCAACCTCC AATACGATTG AGTTTGCCAT GGCTGAAATT ATGAACAAAC CAGATGTCCT 91682 .......... .......... .......... .......... .......... .......... 214 GAGAAAATTA CAACAAGAAG TAGATACAGT TGTGGGAAAA GATAATATTG TAGAAGAGTC 91742 .......... .......... .......... .......... .......... .......... 214 TCATATTCAG CAATTACCAT GTATCTATGC AGTGATGAAA GAAGTATTGC GCATGCATCC 91802 .......... .......... .......... .......... .......... .......... 214 AGCTACTCCA CTATTGGTGC CACATTGTCC AAGTGAGACA GTCACTGTTG GAGGATACAC 91862 .......... .......... .......... .......... .......... .......... 214 TGTTCCTGAA GGATCTCGTG TTTTCATAAA TGTTTGGGCT ATACAGAGAG ATACTTCTAT 91922 .......... .......... .......... .......... .......... .......... 214 CTGGAAAAGT CCAACAGAGT TCTGTCCAGA GAGATTTTTG GAAAATAAAT GGGACTATAG 91982 .......... .......... .......... .......... .......... .......... 214 TGAAAATGAT TTCAACTATT TCCCATTTGG TTCTGGAAGA AGAATCTGTG CGGGGATAGC 92042 .......... .......... .......... .......... .......... .......... 214 CATGGCAGAC AGGATGTTCA CGTATTCACT GGCTTCGATC ATTCATTCTT TCGACTGGAA 92102 .......... .......... .......... .......... .......... .......... 214 ATTGCCCCAA GGAGAAACAT TGGACGTTAC GGAGAAGTTC AGTAGTATTT TGAAGAAGAA 92162 .......... .......... .......... .......... .......... .......... 214 AATACCTCTG GTGGCTTTAC CTACTCCAAG ATAGTCCAAT TCAACACTGT ATGAGTAAGA 92222 .......... .......... .......... .......... .......... .......... 214 TAAAAATGTG TTAGTAGAGA GCCGTGTTCT GTATGATGAT TTTATCTTTT GTATTATGAA 92282 .......... .......... .......... .......... .......... .......... 214 TTATAAAAAC GGGATCCACT ATATAAATAA AGATATAAAA TATCGAGAGA AATAACCTCA 92342 ||| | | | | | |||||||| .......... .......... .......... ..CTATCATC TTTTCATATT CATAACCTCC 242 CAAAATTAGC TCAACTTAAA AAGAGGCTCA CACTAGTGAT AAAGTACCAC TTGTGTCTCA 92402 || ||| AAATATT... .......... .......... .......... .......... .......... 249 CAAAAATCTC TCCCTAAATA AAACTCTCAG AGCCCTTAGG ATTATATTGT AAATTCTACC 92462 ||||| ||||| | || | ||| | | | | .......... ....TAAATT AAACTTTAAG AAATCTTTTG GTATTCCT.. .......... 283 AAGTTAGAAG TAATGAGCCT CTTTTTATAG AACTAGCTTT GAGAACGTGC TTTGCATGTT 92522 .......... .......... .......... .......... .......... .......... 283 TATTCCAAAA ACTTAAATTG TAAATATAAA TTTTATATAG TATATTATAT CACTTTCTTT 92582 | | || ||| | | |||| || | || |||||| .......... .......... ......TCTA TTCTAT-TTG TATA-AAT-T CAACTTCTTT 314 GTGCTGTGGA CTAAAAATGA TAACGTATAA AAAGAACAAA AACTAAGTTA TAGAGTCATT 92642 .......... .......... .......... .......... .......... .......... 314 TTAGTCTAGC AATGCTTACC TTAACATATA TACTTAATTG GTTGTAACTC AACTATATCA 92702 .......... .......... .......... .......... .......... .......... 314 AGATCTCTTG AAACTTATCA GTTATCTTAC AACAACATAT ATACAAAGAT TTTATGATGA 92762 .......... .......... .......... .......... .......... .......... 314 TGCTAAAATT TTGTACGAAG TTACCTAACA TATCATTGAT TTGGTCCTCT AAGTTTTTAA 92822 .......... .......... .......... .......... .......... .......... 314 AGTTACAAGA GTGACATTTA TGACATAGTT TTTATCCATA ATATCATAAT CAACTAGATA 92882 .......... .......... .......... .......... .......... .......... 314 ATTAACTGAT CACTGTGTTA CGAAGACCAT GAGTCCATGA CTTTTTTGGG ATCACTGATT 92942 .......... .......... .......... .......... .......... .......... 314 AGCTAGAGTC ATTATAGCAT CCAATAAGAA GTATATTTAA CAACAACTAT TAATTTTATA 93002 .......... .......... .......... .......... .......... .......... 314 GTATGTACAT AACTTTCTGA GATGAGGAAG TTTGAGCAAA AAAAAAATTT AAGCAATTTC 93062 .......... .......... .......... .......... .......... .......... 314 ACGCTTGATG TTAAAAGCAG TGTGAATCAC TTCAATAATT AAACTGTCTT CCTGCAAAAC 93122 .......... .......... .......... .......... .......... .......... 314 ATGGCTTCAA ACTTCTAAAA CATGTCTTGC AGCTCTCCTG ACAGTTCAAT GGTACAAATA 93182 |||| || | | | || .......... .......... .......... ..ATCTCATG AAACCCCTAT C......... 333 AATGAACATC AAATTCTCCA ATACGTTAGC ATGTTTGATA GATTCTAATA GTTAAATAAT 93242 | ||| || ||| | || ||| | || || | .......... .......... .AAGATTATT ATTTTTATTC TATAGTAA-A AATAGATGCT 371 GAAATAACTC TAAATATTTG TGCAATGATC AGAGGCGGAG CTAGGTGAGC GTTTGTGTGT 93302 |||| || | ||| || | || || | ||| | | || GAAAACTCT- TGAATTTTGA TAGGAT-ATG AAAGGAGTCG ATAA...... .......... 413 TTGGACGAAT TCACTAGCTA TTTTGTGTAT CCTGTAATAG CTCAGTGGTA ATGTATATCC 93362 .......... .......... .......... .......... .......... .......... 413 TGTAATAGCT CAGTGGTAAG GAAGGGGACG TAGATATGTC TTTTACACTA GTGTTGTGGG 93422 .......... .......... .......... .......... .......... .......... 413 TTCAAACTCT ATCATCAATT TTATATCCAA AAATTTAGAA CCTCAAACTC TTAATTTTGA 93482 .......... .......... .......... .......... .......... .......... 413 CTCCACCTCT GAATTAATGA TAGTTCAATT TCTTTTCCTC TCCTAATTCC GACTCCGCTC 93542 .......... .......... .......... .......... .......... .......... 413 TAAACTTATG ATAGTTCAAT TTCTTAGTCA TTCACCTGTG ATTCCTTTAA AAAAAATTGA 93602 .......... .......... .......... .......... .......... .......... 413 AAGTTTGGTT TTGTTAACTA TTCGTCAACA CAGTTAACAG TATGGATTTA TCTTCATTCT 93662 .......... .......... .......... .......... .......... .......... 413 AAATATCTCA TTCCTTCTGT TAATTAGTCT TATACTAATT TTTTTCTCCA GCTTTTTCAA 93722 .......... .......... .......... .......... .......... .......... 413 AATAGGAGTC TAGATCACTT GTTATCTAAA TTATTAAATT GATTCTATTA GGATTAGAAG 93782 .......... .......... .......... .......... .......... .......... 413 TAGTTTTAAG GCGACTAATT TTGAATATTC AGATCAATTA GGTTTCTTAG CACTTTTATC 93842 .......... .......... .......... .......... .......... .......... 413 CTCAAATTTT ATAATCTATC AATTTCTGTC TTCAATCTTT ATAATTTTGC CTGAACATTA 93902 .......... .......... .......... .......... .......... .......... 413 TTTTTTTTTG TTTATTCAAG TAACCCTGTA AAAAAAAAAT TATATGGTGT TAACTAGATG 93962 .......... .......... .......... .......... .......... .......... 413 AAGGGCATCT GATTGGATAT TTGAGGGCCA TGATTGTGAA AGAGGTCAAA TTTTGCTGGG 94022 .......... .......... .......... .......... .......... .......... 413 GATATATCCA AAAAAAGAAA CGATTTTTTT GCTGAATTTG ACTGATCACA AAATGCCAAA 94082 .......... .......... .......... .......... .......... .......... 413 CAAATTTTGC TCCTTTCCAC GTTTCTTCTG ATACTAAACA AACTACTTTT TCCGTTTCAA 94142 .......... .......... .......... .......... .......... .......... 413 TTAACATCAC GAGATTCAAG GGGTGACTCT GCTTCGTTTT TATCTATTTA TATTCATCTC 94202 .......... .......... .......... .......... .......... .......... 413 ATTCCTTCAG CAAAATCAAA AAAAAAAAAA CTTTTAGCTG TGCAAAAGCT TCAGATGTCT 94262 .......... .......... .......... .......... .......... .......... 413 CTCAAATTCT TCAAACCCCT TTTTGATTCT TTTCCATGGC CCCTACAACA ACTCAATGTT 94322 .......... .......... .......... .......... .......... .......... 413 GAGCAAAAGG GTGTGTTTTT CTCCTGTTTT CTTGGGTTCT TAGCTTTACT TTGGTGTTTC 94382 .......... .......... .......... .......... .......... .......... 413 ATCAGAAACT CAAACAAGGG ATTGCCACCA GGGCCTGAAG CTTTGCCCTT GATAGGTAAT 94442 ||||| || | | .....AAACT CAGAGAG... .......... .......... .......... .......... 425 CTCCATTCTC TTGATCCTGA ACTTCACACC TATTTTGCAT CTCTGTCCAA AACATATGGC 94502 .......... .......... .......... .......... .......... .......... 425 CCCATTTGTA GAATCTGGCT TGGTAAAAAA ATTGGGATTA TTATTAGTTC GCCTGCTTTA 94562 .......... .......... .......... .......... .......... .......... 425 GCTCGCGAGG TTCTTAAGGA TAAAGATACT ATTTTTGCAA ACAGAGATGT GTCTGCTGCT 94622 .......... .......... .......... .......... .......... .......... 425 GGAAGAGAAT TTTCATATGG TATCAATGAC TTACTTTGGA GTCCTTATGG ACCGAAATGG 94682 .......... .......... .......... .......... .......... .......... 425 CGAATGTTGA GGAAGCTTTG TGTTCGCGAT ATGCTTAGTT CTTCTAGTAT AGATTCTGTT 94742 .......... .......... .......... .......... .......... .......... 425 TATGGACTAA GGAGAAGGGA GCTTAGACAA TCGATCAATT ACTTGTATAG TCAGAAGGGT 94802 .......... .......... .......... .......... .......... .......... 425 TTACCAGTGA ATATCGGTGA ACAGATGTTC TTGACTTTGC TTAATGTGAT AACAAGTATG 94862 .......... .......... .......... .......... .......... .......... 425 TTATGGGGTG GGACGATGAA GGGTGAGGAA AGAGCTAGTC TTGGAGCTGA GTTTAGGAAT 94922 .......... .......... .......... .......... .......... .......... 425 GTTGTAACTG AGATAGTTGA TTTGGTCAGT ATTCCCAATC TTTCCGATTT TTACCCGGGC 94982 .......... .......... .......... .......... .......... .......... 425 TTGACCTGGT TTGATTTCCA GGGTGTTATA AAGAAGATGA AAGTGGTTCT AAAAAGATTT 95042 .......... .......... .......... .......... .......... .......... 425 GATAAGCTAT TTGAAAGCAT GATTGATCAA AGACAAAAAT TGGACAGAAA TGGAGTTGGC 95102 .......... .......... .......... .......... .......... .......... 425 CGAGAAAGCA AAAACTTTTT GCAAGTTCTG CTGAAGTTGA AAGATGTAGC AGATGCCAAA 95162 .......... .......... .......... .......... .......... .......... 425 ATGCCTCTGA CCATGACTGA AATCAAAGCC TTACTTATGG TATGTTTATC ATTTGTGCAT 95222 .......... .......... .......... .......... .......... .......... 425 TCTACTAGAT TTGTTTTATC CATATGAACC AAAAAGAAAT CTTCCTCTCC CCAGTTAT-C 95281 |||| .......... .......... .......... .......... .......... ....TTATGT 431 ACTGCATTAT TATTGAGTAG CCAAGATGCA ACCATTCATA CCTTATCTAT ATGGATTATT 95341 ||| ||| | || | | ACT-AATTTT TACTTA.... .......... .......... .......... .......... 446 TATTAGCTTA CAAAGTTACA CTGATCATGA TGGCAGATCT TTTTTTTTTA ATATTATTGA 95401 .......... .......... .......... .......... .......... .......... 446 ACAATTATAG TGTAATAAAT ATTAGATTCG TATATTCATT TTCTGAACTG TAAGTTGCTA 95461 .......... .......... .......... .......... .......... .......... 446 CCATGTTAAT GGACTGACTT AAGGATAGAG TCGGCAAATT TAGCATCATC AGATAATATG 95521 .......... .......... .......... .......... .......... .......... 446 TGAAGACTTA ACTGTGAATT ATGACCGAGT ACCTTGAACT GAACTCCAAT GTACAGTTCT 95581 .......... .......... .......... .......... .......... .......... 446 ACGAATAAAA ACTTGTTGTA CATGATACTA AATTCACAAA TACTATGGAC AGGATATGGT 95641 .......... .......... .......... .......... .......... .......... 446 TGTCGCTGGA ACTGACACAA CCTCCAACGC GGTTGAGTTT GCCCTGGCTG AAATTTTGAA 95701 .......... .......... .......... .......... .......... .......... 446 CAAACCAGAC GTCCTGAGGA AAGTACAACA AGAAGTAGAT ACAGTTGTGG GAAAAGATAA 95761 .......... .......... .......... .......... .......... .......... 446 TATAGTAGAA GAGTCTCATA TTCAACAGTT ACCGTATCTC TATGCAGTGA TGAAAGAAGC 95821 .......... .......... .......... .......... .......... .......... 446 GATGCGCATG CATCCAGCCC TCCCACTCTT GGCTCCTCAT TCTCCTAGTG AGACAGTCAC 95881 .......... .......... .......... .......... .......... .......... 446 TGTTGGAGGA TATACTGTTC CTAAAGGATC TTGTATTTTC GTAAATGTAT GGGCTATACA 95941 .......... .......... .......... .......... .......... .......... 446 CAGAGATCCT TCTATCTGGA AAAATCCAAC AGAGTTCCGT CCTGAGAGAT TTTTGGACAA 96001 .......... .......... .......... .......... .......... .......... 446 TAAATGGGAT TATAGTGGTA ATGACTTCAA CTATTTCCCA TTTGGTTCTG GAAGAAGAAT 96061 .......... .......... .......... .......... .......... .......... 446 GTGTGCGGGG ACAGCCATGG CAGAGAGGAT GTTCATGTAT TCATTGGCTT CGCTCATCCA 96121 .......... .......... .......... .......... .......... .......... 446 TTCTTTCGAT TGGAAATTAC CCGAAGGAGA GACGTTAGAC CTTAAAGAGA AGTTTGGTAT 96181 .......... .......... .......... .......... .......... .......... 446 TACTTTGAAG AAGAAAATAC CTCTGGTGGC TATACCTACT CCAAGATTAT GCAATCCAAC 96241 .......... .......... .......... .......... .......... .......... 446 ATTGTATGAG TAAGATTTTA AAGAAAAAAA AAGTATCAGT GTTAAGTGTT ATGTGCTAAT 96301 .......... .......... .......... .......... .......... .......... 446 GTGTAAGTAT CAGTGTTATG TGCTAATGTC TTTCAAAGAC TAATATTAAT GAGCATTGAA 96361 .......... .......... .......... .......... .......... .......... 446 TAATTCTAAG TTTCCTACTT ATAGATAATG AGTGATCTTT TCTTCTAATT ATGACCGAAA 96421 .......... .......... .......... .......... .......... .......... 446 TAACTTAATA TCATGCTTTA TGATGATGCT AAAATTTTGG ACTAAGTTAT CTAACATAAT 96481 .......... .......... .......... .......... .......... .......... 446 TAAAAAAGTT GATTCCCTGA GTCTTCATGG TTCATCTTCA TTAATGAGTG GTCGTTTTGT 96541 .......... .......... .......... .......... .......... .......... 446 GTCTTTATCA TCTCTTTTCT CATAAATTTC TATATTTATA GTAGTAAACA ATGACTTTTT 96601 .......... .......... .......... .......... .......... .......... 446 ATATGTATTT TGATAGTTAT CACATGAATT TTGTTTATGT TATTTAACAA AATAATATAT 96661 .......... .......... .......... .......... .......... .......... 446 TGAATGCAGG TTTTTAAATT CTTCTCTTTT ATGTACGGAT AAAAGAAAGT TATAGGAATT 96721 ||||| | .........T TTTTTCA... .......... .......... .......... .......... 454 AAAAAATGTA ATTGAAGTCG TATAGGTGTA GATTTATGGA TAAATTATGG GTTAAGGCTA 96781 .......... .......... .......... .......... .......... .......... 454 TAAAATAAAT TAACTACACT TAAATGACAA TAATTCCAAT AGATTAATAC ACCATTACAT 96841 .......... .......... .......... .......... .......... .......... 454 ATTTTCTTAA TGACTATTCC AGTAGGTCAT ACAAACTTAT AATGTTATAA ATAATAAATA 96901 .......... .......... .......... .......... .......... .......... 454 CTAATTATTT AGAATATTAT CTTTGTCTAG AATTTTTTAT CACAATAAGT CATTATTAAA 96961 | | ||| | .......... .......... .......... .......... .........T CTATATATAC 465 ATCAATTTTA TCAAAATAAT 96981 |||||| ||| | | |||||| ATCAATCTTA TAAGAATAAT 485 hqPGS_C08HBa0060C12.1+_SGN-E301194+ (90665 90878,92315 92349,92417 92450,92549 92582,93155 93173,93204 93286,94388 94399,95277 95297,96671 96678,96951 96981) ******************************************************************************** EST sequence 36 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 89572 to 93396): Exon 1 90862 91282 ( 421 n); cDNA 16 435 ( 420 n); score: 0.914 Intron 1 91283 91599 ( 317 n); Pd: 0.999 (s: 0.94), Pa: 0.981 (s: 0.82) Exon 2 91600 91886 ( 287 n); cDNA 436 722 ( 287 n); score: 0.875 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.898 708 0.981 C PGS_C08HBa0060C12.1+_SGN-E378935+ (90862 91282,91600 91886) Alignment (genomic DNA sequence = upper lines): TACTTGTATA GTCAGAAGGG TTTACCAATG AATGTTAGTG AACAGACGTT TTTGACTATT 90921 |||||||||| |||||| ||| ||||||| || |||||| ||| |||||| ||| |||||| | TACTTGTATA GTCAGAGGGG TTTACCAGTG AATGTTGGTG AACAGATGTT CTTGACTGTG 75 CTTAATGTGA TGACAAGCAT GTTATGGGGT GGCACAGTGA AGGGTGAGGA AAGAGCTAGC 90981 |||||||||| |||||||||| ||||||||| ||||| ||| |||||||||| |||||||| CTTAATGTGA TGACAAGCAT GTTATGGGGA GGCACGATGA AGGGTGAGGA AAGAGCTACT 135 GTTGGAGCTG AGTTTAGGCA TGTTGTGACT GGGATAGCTC AGTTGGTCAG TATTCCCAAT 91041 ||||||||| |||||||||| |||||||||| | ||||||| ||||| |||| |||||||||| CTTGGAGCTG AGTTTAGGCA TGTTGTGACT GAGATAGCTG AGTTGATCAG TATTCCCAAT 195 CTTACCGATT TTTACCCGGG CTTGGCCTGG TTTGATTTCC AAGGTATTAC AAAGAAGATG 91101 ||| | |||| |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| CTTTCTGATT TTTACCCGGG CTTGGCCTGG TTTGATTTCC AGGGTGTTAT AAAGAAGATT 255 AAGGTGTTGG CAAAGAGATT TGATAAGATA TTTGAGGGAA TAATTGATCA AAGACAAAAA 91161 ||||||||| ||||||||| |||||||||| ||||| | | | |||||||| |||||||||| AAGGTGTTGC TAAAGAGATT TGATAAGATA TTTGAAAGCA TGATTGATCA AAGACAAAAA 315 TTGGACAGAA ATGGTGTTGG CCAAGATAGC AAAGACTTTT TTGCAAGTTT TGTTAAAGTT 91221 || ||||||| |||||||||| |||||| ||| |||||| ||| |||||||||| || | ||||| TTAGACAGAA ATGGTGTTGG CCAAGAAAGC AAAGAC-TTT TTGCAAGTTT TGCTCAAGTT 374 GAAAGATGAA GCAGATCCCA AAATACCTCT GACCATGACT GACATCAAAG CCTTACTTAT 91281 |||||||||| |||||| ||| |||| ||||| |||||||||| || ||||||| |||||||||| GAAAGATGAA GCAGATGCCA AAATGCCTCT GACCATGACT GAAATCAAAG CCTTACTTAT 434 GGTATGTTTT ATCAGTTGTT CATTCTACTA AATTTTCTTT TTCCAGAAAT TGGCATATAG 91341 | G......... .......... .......... .......... .......... .......... 435 TGATATAAGT CATAATAAGA TGATTGTAAA TGTATTGAAG AATTATTGTT AGTAATAAAT 91401 .......... .......... .......... .......... .......... .......... 435 ATATTCATGT CCTGAACTGT TAGTAGTTAC CATGTTATTG GACTGCATTA AAGAAAGAGT 91461 .......... .......... .......... .......... .......... .......... 435 CGGCAAATTT AGCATCAGAT TATATGTGAA GACTTAACTG TGAATTAAGA CTCTGAACTT 91521 .......... .......... .......... .......... .......... .......... 435 TGAACTGAAC TCCAATATAC AGTTTTACAG TTAAAAAATT GTTGAATATG ATAATAACTT 91581 .......... .......... .......... .......... .......... .......... 435 CACATCTACT ATGGACAGGA AATGGTTCTC GGTGGAACTG GCTCAACCTC CAATACGATT 91641 || ||||| || |||||||||| | |||| || ||| || || .......... ........GA TTTGGTTGTC GGTGGAACTG ACACAACTTC CAACGCGGTT 477 GAGTTTGCCA TGGCTGAAAT TATGAACAAA CCAGATGTCC TGAGAAAATT ACAACAAGAA 91701 |||||||||| |||||||||| | |||||||| |||||| ||| |||||||| | |||||||||| GAGTTTGCCA TGGCTGAAAT TTTGAACAAA CCAGATATCC TGAGAAAAAT ACAACAAGAA 537 GTAGATACAG TTGTGGGAAA AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA 91761 |||||||||| |||||||||| |||||| || || ||||||| |||||||||| || |||||| GTAGATACAG TTGTGGGAAA AGATAACATA GTGGAAGAGT CTCATATTCA ACAGTTACCA 597 TGTATCTATG CAGTGATGAA AGAAGTATTG CGCATGCATC CAGCTACTCC ACTATTGGTG 91821 | | |||||| |||||||||| ||||| || ||||| |||| |||| || ||| |||| TATCTCTATG CAGTGATGAA AGAAGCCATG CGCATACATC CAGCCCTCCC ACTCTTGGCT 657 CCACATTGTC CAAGTGAGAC AGTCACTGTT GGAGGATACA CTGTTCCTGA AGGATCTCGT 91881 || ||||||| | |||||||| | |||||||| || ||||||| |||||||| | ||| |||||| CCTCATTGTC CTAGTGAGAC AATCACTGTT GGTGGATACA CTGTTCCTAA AGGGTCTCGT 717 GTTTT 91886 ||||| GTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (90862 91282,91600 91886) ******************************************************************************** EST sequence 180 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 89572 to 92913): Exon 1 90862 91282 ( 421 n); cDNA 16 435 ( 420 n); score: 0.914 Intron 1 91283 91599 ( 317 n); Pd: 0.999 (s: 0.94), Pa: 0.981 (s: 0.82) Exon 2 91600 91702 ( 103 n); cDNA 436 538 ( 103 n); score: 0.883 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.908 524 0.974 C PGS_C08HBa0060C12.1+_SGN-E206806+ (90862 91282,91600 91702) Alignment (genomic DNA sequence = upper lines): TACTTGTATA GTCAGAAGGG TTTACCAATG AATGTTAGTG AACAGACGTT TTTGACTATT 90921 |||||||||| |||||| ||| ||||||| || |||||| ||| |||||| ||| |||||| | TACTTGTATA GTCAGAGGGG TTTACCAGTG AATGTTGGTG AACAGATGTT CTTGACTGTG 75 CTTAATGTGA TGACAAGCAT GTTATGGGGT GGCACAGTGA AGGGTGAGGA AAGAGCTAGC 90981 |||||||||| |||||||||| ||||||||| ||||| ||| |||||||||| |||||||| CTTAATGTGA TGACAAGCAT GTTATGGGGA GGCACGATGA AGGGTGAGGA AAGAGCTACT 135 GTTGGAGCTG AGTTTAGGCA TGTTGTGACT GGGATAGCTC AGTTGGTCAG TATTCCCAAT 91041 ||||||||| |||||||||| |||||||||| | ||||||| ||||| |||| |||||||||| CTTGGAGCTG AGTTTAGGCA TGTTGTGACT GAGATAGCTG AGTTGATCAG TATTCCCAAT 195 CTTACCGATT TTTACCCGGG CTTGGCCTGG TTTGATTTCC AAGGTATTAC AAAGAAGATG 91101 ||| | |||| |||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| CTTTCTGATT TTTACCCGGG CTTGGCCTGG TTTGATTTCC AGGGTGTTAT AAAGAAGATT 255 AAGGTGTTGG CAAAGAGATT TGATAAGATA TTTGAGGGAA TAATTGATCA AAGACAAAAA 91161 ||||||||| ||||||||| |||||||||| ||||| | | | |||||||| |||||||||| AAGGTGTTGC TAAAGAGATT TGATAAGATA TTTGAAAGCA TGATTGATCA AAGACAAAAA 315 TTGGACAGAA ATGGTGTTGG CCAAGATAGC AAAGACTTTT TTGCAAGTTT TGTTAAAGTT 91221 || ||||||| |||||||||| |||||| ||| |||||| ||| |||||||||| || | ||||| TTAGACAGAA ATGGTGTTGG CCAAGAAAGC AAAGAC-TTT TTGCAAGTTT TGCTCAAGTT 374 GAAAGATGAA GCAGATCCCA AAATACCTCT GACCATGACT GACATCAAAG CCTTACTTAT 91281 |||||||||| |||||| ||| |||| ||||| |||||||||| || ||||||| |||||||||| GAAAGATGAA GCAGATGCCA AAATGCCTCT GACCATGACT GAAATCAAAG CCTTACTTAT 434 GGTATGTTTT ATCAGTTGTT CATTCTACTA AATTTTCTTT TTCCAGAAAT TGGCATATAG 91341 | G......... .......... .......... .......... .......... .......... 435 TGATATAAGT CATAATAAGA TGATTGTAAA TGTATTGAAG AATTATTGTT AGTAATAAAT 91401 .......... .......... .......... .......... .......... .......... 435 ATATTCATGT CCTGAACTGT TAGTAGTTAC CATGTTATTG GACTGCATTA AAGAAAGAGT 91461 .......... .......... .......... .......... .......... .......... 435 CGGCAAATTT AGCATCAGAT TATATGTGAA GACTTAACTG TGAATTAAGA CTCTGAACTT 91521 .......... .......... .......... .......... .......... .......... 435 TGAACTGAAC TCCAATATAC AGTTTTACAG TTAAAAAATT GTTGAATATG ATAATAACTT 91581 .......... .......... .......... .......... .......... .......... 435 CACATCTACT ATGGACAGGA AATGGTTCTC GGTGGAACTG GCTCAACCTC CAATACGATT 91641 || ||||| || |||||||||| | |||| || ||| || || .......... ........GA TTTGGTTGTC GGTGGAACTG ACACAACTTC CAACGCGGTT 477 GAGTTTGCCA TGGCTGAAAT TATGAACAAA CCAGATGTCC TGAGAAAATT ACAACAAGAA 91701 |||||||||| |||||||||| | |||||||| |||||| ||| |||||||| | |||||||||| GAGTTTGCCA TGGCTGAAAT TTTGAACAAA CCAGATATCC TGAGAAAAAT ACAACAAGAA 537 G 91702 | G 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (90862 91282,91600 91702) ******************************************************************************** EST sequence 150 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 89774 to 92743): Exon 1 90880 91282 ( 403 n); cDNA 3 404 ( 402 n); score: 0.861 Intron 1 91283 91599 ( 317 n); Pd: 0.999 (s: 0.92), Pa: 0.981 (s: 0.74) Exon 2 91600 91667 ( 68 n); cDNA 405 472 ( 68 n); score: 0.794 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.851 471 0.998 C PGS_C08HBa0060C12.1+_SGN-E205363+ (90880 91282,91600 91667) Alignment (genomic DNA sequence = upper lines): GGTTTACCAA TGAATGTTAG TGAACAGACG TTTTTGACTA TTCTTAATGT GATGACAAGC 90939 || | || |||||||| | |||||||| | ||||||||| |||||||| ||| |||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA GCGTTGGAGC TGAGTTTAGG 90999 |||||||||| |||||||||| |||||||||| |||||||||| |||| || ||| ||||| ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 CATGTTGTGA CTGGGATAGC TCAGTTGGTC AGTATTCCCA ATCTTACCGA TTTTTACCCG 91059 ||||||||| || ||| | || || | || ||| | ||||| |||| |||||||||| GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 GGCTTGGCCT GGTTTGATTT CCAAGGTATT ACAAAGAAGA TGAAGGTGTT GGCAAAGAGA 91119 || ||||||| |||||||||| || ||| || | |||||||| |||| ||||| |||||||||| GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TTTGATAAGA TATTTGAGGG AATAATTGAT CAAAGACAAA AATTGGACAG AAATGGTGTT 91179 | |||||| | |||||||| | || |||||| |||||||||| || || | || |||||| ||| TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACAAA AAATGAATAG AAATGGGGTT 302 GGCCAAGATA GCAAAGACTT TTTTGCAAGT TTTGTTAAAG TTGAAAGATG AAGCAGATCC 91239 |||||||| | |||| ||| | |||||||||| |||| | ||| |||||||||| |||||||||| GGCCAAGAAA GCAAGGAC-T TTTTGCAAGT TTTGCTGAAG TTGAAAGATG AAGCAGATCC 361 CAAAATACCT CTGACCATGA CTGACATCAA AGCCTTACTT ATGGTATGTT TTATCAGTTG 91299 |||||| ||| |||||||||| |||| |||| |||||||||| | | CAAAATGCCT CTGACCATGA CTGAACTCAA AGCCTTACTT ACG....... .......... 404 TTCATTCTAC TAAATTTTCT TTTTCCAGAA ATTGGCATAT AGTGATATAA GTCATAATAA 91359 .......... .......... .......... .......... .......... .......... 404 GATGATTGTA AATGTATTGA AGAATTATTG TTAGTAATAA ATATATTCAT GTCCTGAACT 91419 .......... .......... .......... .......... .......... .......... 404 GTTAGTAGTT ACCATGTTAT TGGACTGCAT TAAAGAAAGA GTCGGCAAAT TTAGCATCAG 91479 .......... .......... .......... .......... .......... .......... 404 ATTATATGTG AAGACTTAAC TGTGAATTAA GACTCTGAAC TTTGAACTGA ACTCCAATAT 91539 .......... .......... .......... .......... .......... .......... 404 ACAGTTTTAC AGTTAAAAAA TTGTTGAATA TGATAATAAC TTCACATCTA CTATGGACAG 91599 .......... .......... .......... .......... .......... .......... 404 GAAATGGTTC TCGGTGGAAC TGGCTCAACC TCCAATACGA TTGAGTTTGC CATGGCTGAA 91659 || |||||| | |||||||| || | | |||| || |||||||||| |||| ||||| GATATGGTTG TTGGTGGAAC TGAAACTAGT GCCAACACAG TTGAGTTTGC CATGACTGAA 464 ATTATGAA 91667 |||||||| ATTATGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (90880 91282,91600 91667) ******************************************************************************** EST sequence 330 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 87076 to 94971): Exon 1 91239 91282 ( 44 n); cDNA 1 44 ( 44 n); score: 0.955 Intron 1 91283 91599 ( 317 n); Pd: 0.999 (s: 0.95), Pa: 0.981 (s: 0.82) Exon 2 91600 92231 ( 632 n); cDNA 45 676 ( 632 n); score: 0.886 Intron 2 92232 93342 (1111 n); Pd: 0.000 (s: 0.94), Pa: 0.737 (s: 0) Exon 3 93343 93356 ( 14 n); cDNA 677 689 ( 13 n); score: 0.714 MATCH C08HBa0060C12.1+ SGN-E378974- 0.886 690 0.948 C PGS_C08HBa0060C12.1+_SGN-E378974- (91239 91282,91600 92231,93343 93356) Alignment (genomic DNA sequence = upper lines): CCAAAATACC TCTGACCATG ACTGACATCA AAGCCTTACT TATGGTATGT TTTATCAGTT 91298 ||||||| || |||||||||| ||||| |||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 GTTCATTCTA CTAAATTTTC TTTTTCCAGA AATTGGCATA TAGTGATATA AGTCATAATA 91358 .......... .......... .......... .......... .......... .......... 44 AGATGATTGT AAATGTATTG AAGAATTATT GTTAGTAATA AATATATTCA TGTCCTGAAC 91418 .......... .......... .......... .......... .......... .......... 44 TGTTAGTAGT TACCATGTTA TTGGACTGCA TTAAAGAAAG AGTCGGCAAA TTTAGCATCA 91478 .......... .......... .......... .......... .......... .......... 44 GATTATATGT GAAGACTTAA CTGTGAATTA AGACTCTGAA CTTTGAACTG AACTCCAATA 91538 .......... .......... .......... .......... .......... .......... 44 TACAGTTTTA CAGTTAAAAA ATTGTTGAAT ATGATAATAA CTTCACATCT ACTATGGACA 91598 .......... .......... .......... .......... .......... .......... 44 GGAAATGGTT CTCGGTGGAA CTGGCTCAAC CTCCAATACG ATTGAGTTTG CCATGGCTGA 91658 || ||||| ||||||||| ||| | |||| ||||| || ||||||||| |||||||||| .GATTTGGTT GTCGGTGGAA CTGACACAAC TTCCAACGCG GTTGAGTTTG CCATGGCTGA 103 AATTATGAAC AAACCAGATG TCCTGAGAAA ATTACAACAA GAAGTAGATA CAGTTGTGGG 91718 |||| ||||| ||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AATTTTGAAC AAACCAGATA TCCTGAGAAA AATACAACAA GAAGTAGATA CAGTTGTGGG 163 AAAAGATAAT ATTGTAGAAG AGTCTCATAT TCAGCAATTA CCATGTATCT ATGCAGTGAT 91778 ||||||||| || || |||| |||||||||| ||| || ||| |||| | ||| |||||||||| AAAAGATAAC ATAGTGGAAG AGTCTCATAT TCAACAGTTA CCATATCTCT ATGCAGTGAT 223 GAAAGAAGTA TTGCGCATGC ATCCAGCTAC TCCACTATTG GTGCCACATT GTCCAAGTGA 91838 |||||||| ||||||| | ||||||| ||||| ||| | || |||| |||| ||||| GAAAGAAGCC ATGCGCATAC ATCCAGCCCT CCCACTCTTG GCTCCTCATT GTCCTAGTGA 283 GACAGTCACT GTTGGAGGAT ACACTGTTCC TGAAGGATCT CGTGTTTTCA TAAATGTTTG 91898 |||| ||||| ||||| |||| |||||||||| | |||| ||| |||||||| ||||||| || GACAATCACT GTTGGTGGAT ACACTGTTCC TAAAGGGTCT CGTGTTTTTG TAAATGTATG 343 GGCTATACAG AGAGATACTT CTATCTGGAA AAGTCCAACA GAGTTCTGTC CAGAGAGATT 91958 ||||||||| |||||| ||| |||| ||||| || ||||||| |||||||||| |||||||||| GGCTATACAC AGAGATCCTT CTATGTGGAA AAATCCAACA GAGTTCTGTC CAGAGAGATT 403 TTTGGAAAAT AAATGGGACT ATAGTGAAAA TGATTTCAAC TATTTCCCAT TTGGTTCTGG 92018 |||||| ||| |||||| | | |||||| ||| |||||||||| |||||||||| |||||||||| TTTGGATAAT AAATGGAATT ATAGTGGAAA TGATTTCAAC TATTTCCCAT TTGGTTCTGG 463 AAGAAGAATC TGTGCGGGGA TAGCCATGGC AGACAGGATG TTCACGTATT CACTGGCTTC 92078 |||||||| |||||||||| |||||||||| ||| |||||| |||| ||||| |||||||||| CAGAAGAATG TGTGCGGGGA TAGCCATGGC AGAGAGGATG TTCATGTATT CACTGGCTTC 523 GATCATTCAT TCTTTCGACT GGAAATTGCC CCAAGGAGAA ACATTGGACG TTACGGAGAA 92138 |||||||| |||||||| | |||||||||| ||||||| || || ||| ||| ||||| ACTCATTCAT TCTTTCGATT GGAAATTGCC TGAAGGAGAG ACGTTAGACC TTAAAGAGAA 583 GTTCAGTAGT ATTTTGAAGA AGAAAATACC TCTGGTGGCT TTACCTACTC CAAGATAGTC 92198 ||| ||| | |||||||| ||||||| || |||||||||| ||||||||| |||||| ||| GTTTTGTATT GCTTTGAAGA AGAAAATGCC TCTGGTGGCT ATACCTACTC CAAGATTGTC 643 CAATTCAACA CTGTATGAGT AAGATAAAAA TGTGTTAGTA GAGAGCCGTG TTCTGTATGA 92258 |||| ||||| | |||||||| |||||||||| ||| CAATCCAACA CAGTATGAGT AAGATAAAAA TGT....... .......... .......... 676 TGATTTTATC TTTTGTATTA TGAATTATAA AAACGGGATC CACTATATAA ATAAAGATAT 92318 .......... .......... .......... .......... .......... .......... 676 AAAATATCGA GAGAAATAAC CTCACAAAAT TAGCTCAACT TAAAAAGAGG CTCACACTAG 92378 .......... .......... .......... .......... .......... .......... 676 TGATAAAGTA CCACTTGTGT CTCACAAAAA TCTCTCCCTA AATAAAACTC TCAGAGCCCT 92438 .......... .......... .......... .......... .......... .......... 676 TAGGATTATA TTGTAAATTC TACCAAGTTA GAAGTAATGA GCCTCTTTTT ATAGAACTAG 92498 .......... .......... .......... .......... .......... .......... 676 CTTTGAGAAC GTGCTTTGCA TGTTTATTCC AAAAACTTAA ATTGTAAATA TAAATTTTAT 92558 .......... .......... .......... .......... .......... .......... 676 ATAGTATATT ATATCACTTT CTTTGTGCTG TGGACTAAAA ATGATAACGT ATAAAAAGAA 92618 .......... .......... .......... .......... .......... .......... 676 CAAAAACTAA GTTATAGAGT CATTTTAGTC TAGCAATGCT TACCTTAACA TATATACTTA 92678 .......... .......... .......... .......... .......... .......... 676 ATTGGTTGTA ACTCAACTAT ATCAAGATCT CTTGAAACTT ATCAGTTATC TTACAACAAC 92738 .......... .......... .......... .......... .......... .......... 676 ATATATACAA AGATTTTATG ATGATGCTAA AATTTTGTAC GAAGTTACCT AACATATCAT 92798 .......... .......... .......... .......... .......... .......... 676 TGATTTGGTC CTCTAAGTTT TTAAAGTTAC AAGAGTGACA TTTATGACAT AGTTTTTATC 92858 .......... .......... .......... .......... .......... .......... 676 CATAATATCA TAATCAACTA GATAATTAAC TGATCACTGT GTTACGAAGA CCATGAGTCC 92918 .......... .......... .......... .......... .......... .......... 676 ATGACTTTTT TGGGATCACT GATTAGCTAG AGTCATTATA GCATCCAATA AGAAGTATAT 92978 .......... .......... .......... .......... .......... .......... 676 TTAACAACAA CTATTAATTT TATAGTATGT ACATAACTTT CTGAGATGAG GAAGTTTGAG 93038 .......... .......... .......... .......... .......... .......... 676 CAAAAAAAAA ATTTAAGCAA TTTCACGCTT GATGTTAAAA GCAGTGTGAA TCACTTCAAT 93098 .......... .......... .......... .......... .......... .......... 676 AATTAAACTG TCTTCCTGCA AAACATGGCT TCAAACTTCT AAAACATGTC TTGCAGCTCT 93158 .......... .......... .......... .......... .......... .......... 676 CCTGACAGTT CAATGGTACA AATAAATGAA CATCAAATTC TCCAATACGT TAGCATGTTT 93218 .......... .......... .......... .......... .......... .......... 676 GATAGATTCT AATAGTTAAA TAATGAAATA ACTCTAAATA TTTGTGCAAT GATCAGAGGC 93278 .......... .......... .......... .......... .......... .......... 676 GGAGCTAGGT GAGCGTTTGT GTGTTTGGAC GAATTCACTA GCTATTTTGT GTATCCTGTA 93338 .......... .......... .......... .......... .......... .......... 676 ATAGCTCAGT GGTAATGT 93356 ||| | || |||| ....ATCACT -GTTATGT 689 hqPGS_C08HBa0060C12.1+_SGN-E378974- (91239 91282,91600 92231) ******************************************************************************** EST sequence 52 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 91122 to 98485): Exon 1 91722 92275 ( 554 n); cDNA 1 554 ( 554 n); score: 0.886 Intron 1 92276 95276 (3001 n); Pd: 0.000 (s: 0.72), Pa: 0.413 (s: 0) Exon 2 95277 95307 ( 31 n); cDNA 555 584 ( 30 n); score: 0.645 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.886 585 0.822 C PGS_C08HBa0060C12.1+_SGN-E551573+ (91722 92275,95277 95307) Alignment (genomic DNA sequence = upper lines): AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TGTATCTATG CAGTGATGAA 91781 |||||||||| |||||||||| |||||||||| |||||||||| | | |||||| |||||||||| AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 60 AGAAGTATTG CGCATGCATC CAGCTACTCC ACTATTGGTG CCACATTGTC CAAGTGAGAC 91841 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||| || AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 120 AGTCACTGTT GGAGGATACA CTGTTCCTGA AGGATCTCGT GTTTTCATAA ATGTTTGGGC 91901 | |||||| |||||||||| |||||||| | |||||||||| |||||||||| |||| ||||| ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 180 TATACAGAGA GATACTTCTA TCTGGAAAAG TCCAACAGAG TTCTGTCCAG AGAGATTTTT 91961 |||||| ||| ||| |||||| |||||| || |||||||||| ||| |||||| |||||||||| TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 240 GGAAAATAAA TGGGACTATA GTGAAAATGA TTTCAACTAT TTCCCATTTG GTTCTGGAAG 92021 ||| |||||| ||||| | || ||| |||||| |||||||||| || ||||||| ||||||| || GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 300 AAGAATCTGT GCGGGGATAG CCATGGCAGA CAGGATGTTC ACGTATTCAC TGGCTTCGAT 92081 |||||||||| | |||||||| ||||||||| ||||||||| | |||| ||| |||||||| | AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 360 CATTCATTCT TTCGACTGGA AATTGCCCCA AGGAGAAACA TTGGACGTTA CGGAGAAGTT 92141 |||||||||| || || |||| ||||||| | |||||| ||| ||| ||| | |||| ||| CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 420 CAGTAGTATT TTGAAGAAGA AAATACCTCT GGTGGCTTTA CCTACTCCAA GATAGTCCAA 92201 || || | |||| ||||| |||| ||||| |||| || || |||||||||| ||| |||||| TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 480 TTCAACACTG TATGAGTAAG ATAAAAATGT GTTAGTAGAG AGCCGTGTTC TGTATGATGA 92261 | ||||||| |||||||||| ||||| || | | || ||| || ||| ||| |||||||||| TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 540 TTTTATCTTT TGTATTATGA ATTATAAAAA CGGGATCCAC TATATAAATA AAGATATAAA 92321 || | | || | | TTCTGTATTA TCTC...... .......... .......... .......... .......... 554 ATATCGAGAG AAATAACCTC ACAAAATTAG CTCAACTTAA AAAGAGGCTC ACACTAGTGA 92381 .......... .......... .......... .......... .......... .......... 554 TAAAGTACCA CTTGTGTCTC ACAAAAATCT CTCCCTAAAT AAAACTCTCA GAGCCCTTAG 92441 .......... .......... .......... .......... .......... .......... 554 GATTATATTG TAAATTCTAC CAAGTTAGAA GTAATGAGCC TCTTTTTATA GAACTAGCTT 92501 .......... .......... .......... .......... .......... .......... 554 TGAGAACGTG CTTTGCATGT TTATTCCAAA AACTTAAATT GTAAATATAA ATTTTATATA 92561 .......... .......... .......... .......... .......... .......... 554 GTATATTATA TCACTTTCTT TGTGCTGTGG ACTAAAAATG ATAACGTATA AAAAGAACAA 92621 .......... .......... .......... .......... .......... .......... 554 AAACTAAGTT ATAGAGTCAT TTTAGTCTAG CAATGCTTAC CTTAACATAT ATACTTAATT 92681 .......... .......... .......... .......... .......... .......... 554 GGTTGTAACT CAACTATATC AAGATCTCTT GAAACTTATC AGTTATCTTA CAACAACATA 92741 .......... .......... .......... .......... .......... .......... 554 TATACAAAGA TTTTATGATG ATGCTAAAAT TTTGTACGAA GTTACCTAAC ATATCATTGA 92801 .......... .......... .......... .......... .......... .......... 554 TTTGGTCCTC TAAGTTTTTA AAGTTACAAG AGTGACATTT ATGACATAGT TTTTATCCAT 92861 .......... .......... .......... .......... .......... .......... 554 AATATCATAA TCAACTAGAT AATTAACTGA TCACTGTGTT ACGAAGACCA TGAGTCCATG 92921 .......... .......... .......... .......... .......... .......... 554 ACTTTTTTGG GATCACTGAT TAGCTAGAGT CATTATAGCA TCCAATAAGA AGTATATTTA 92981 .......... .......... .......... .......... .......... .......... 554 ACAACAACTA TTAATTTTAT AGTATGTACA TAACTTTCTG AGATGAGGAA GTTTGAGCAA 93041 .......... .......... .......... .......... .......... .......... 554 AAAAAAAATT TAAGCAATTT CACGCTTGAT GTTAAAAGCA GTGTGAATCA CTTCAATAAT 93101 .......... .......... .......... .......... .......... .......... 554 TAAACTGTCT TCCTGCAAAA CATGGCTTCA AACTTCTAAA ACATGTCTTG CAGCTCTCCT 93161 .......... .......... .......... .......... .......... .......... 554 GACAGTTCAA TGGTACAAAT AAATGAACAT CAAATTCTCC AATACGTTAG CATGTTTGAT 93221 .......... .......... .......... .......... .......... .......... 554 AGATTCTAAT AGTTAAATAA TGAAATAACT CTAAATATTT GTGCAATGAT CAGAGGCGGA 93281 .......... .......... .......... .......... .......... .......... 554 GCTAGGTGAG CGTTTGTGTG TTTGGACGAA TTCACTAGCT ATTTTGTGTA TCCTGTAATA 93341 .......... .......... .......... .......... .......... .......... 554 GCTCAGTGGT AATGTATATC CTGTAATAGC TCAGTGGTAA GGAAGGGGAC GTAGATATGT 93401 .......... .......... .......... .......... .......... .......... 554 CTTTTACACT AGTGTTGTGG GTTCAAACTC TATCATCAAT TTTATATCCA AAAATTTAGA 93461 .......... .......... .......... .......... .......... .......... 554 ACCTCAAACT CTTAATTTTG ACTCCACCTC TGAATTAATG ATAGTTCAAT TTCTTTTCCT 93521 .......... .......... .......... .......... .......... .......... 554 CTCCTAATTC CGACTCCGCT CTAAACTTAT GATAGTTCAA TTTCTTAGTC ATTCACCTGT 93581 .......... .......... .......... .......... .......... .......... 554 GATTCCTTTA AAAAAAATTG AAAGTTTGGT TTTGTTAACT ATTCGTCAAC ACAGTTAACA 93641 .......... .......... .......... .......... .......... .......... 554 GTATGGATTT ATCTTCATTC TAAATATCTC ATTCCTTCTG TTAATTAGTC TTATACTAAT 93701 .......... .......... .......... .......... .......... .......... 554 TTTTTTCTCC AGCTTTTTCA AAATAGGAGT CTAGATCACT TGTTATCTAA ATTATTAAAT 93761 .......... .......... .......... .......... .......... .......... 554 TGATTCTATT AGGATTAGAA GTAGTTTTAA GGCGACTAAT TTTGAATATT CAGATCAATT 93821 .......... .......... .......... .......... .......... .......... 554 AGGTTTCTTA GCACTTTTAT CCTCAAATTT TATAATCTAT CAATTTCTGT CTTCAATCTT 93881 .......... .......... .......... .......... .......... .......... 554 TATAATTTTG CCTGAACATT ATTTTTTTTT GTTTATTCAA GTAACCCTGT AAAAAAAAAA 93941 .......... .......... .......... .......... .......... .......... 554 TTATATGGTG TTAACTAGAT GAAGGGCATC TGATTGGATA TTTGAGGGCC ATGATTGTGA 94001 .......... .......... .......... .......... .......... .......... 554 AAGAGGTCAA ATTTTGCTGG GGATATATCC AAAAAAAGAA ACGATTTTTT TGCTGAATTT 94061 .......... .......... .......... .......... .......... .......... 554 GACTGATCAC AAAATGCCAA ACAAATTTTG CTCCTTTCCA CGTTTCTTCT GATACTAAAC 94121 .......... .......... .......... .......... .......... .......... 554 AAACTACTTT TTCCGTTTCA ATTAACATCA CGAGATTCAA GGGGTGACTC TGCTTCGTTT 94181 .......... .......... .......... .......... .......... .......... 554 TTATCTATTT ATATTCATCT CATTCCTTCA GCAAAATCAA AAAAAAAAAA ACTTTTAGCT 94241 .......... .......... .......... .......... .......... .......... 554 GTGCAAAAGC TTCAGATGTC TCTCAAATTC TTCAAACCCC TTTTTGATTC TTTTCCATGG 94301 .......... .......... .......... .......... .......... .......... 554 CCCCTACAAC AACTCAATGT TGAGCAAAAG GGTGTGTTTT TCTCCTGTTT TCTTGGGTTC 94361 .......... .......... .......... .......... .......... .......... 554 TTAGCTTTAC TTTGGTGTTT CATCAGAAAC TCAAACAAGG GATTGCCACC AGGGCCTGAA 94421 .......... .......... .......... .......... .......... .......... 554 GCTTTGCCCT TGATAGGTAA TCTCCATTCT CTTGATCCTG AACTTCACAC CTATTTTGCA 94481 .......... .......... .......... .......... .......... .......... 554 TCTCTGTCCA AAACATATGG CCCCATTTGT AGAATCTGGC TTGGTAAAAA AATTGGGATT 94541 .......... .......... .......... .......... .......... .......... 554 ATTATTAGTT CGCCTGCTTT AGCTCGCGAG GTTCTTAAGG ATAAAGATAC TATTTTTGCA 94601 .......... .......... .......... .......... .......... .......... 554 AACAGAGATG TGTCTGCTGC TGGAAGAGAA TTTTCATATG GTATCAATGA CTTACTTTGG 94661 .......... .......... .......... .......... .......... .......... 554 AGTCCTTATG GACCGAAATG GCGAATGTTG AGGAAGCTTT GTGTTCGCGA TATGCTTAGT 94721 .......... .......... .......... .......... .......... .......... 554 TCTTCTAGTA TAGATTCTGT TTATGGACTA AGGAGAAGGG AGCTTAGACA ATCGATCAAT 94781 .......... .......... .......... .......... .......... .......... 554 TACTTGTATA GTCAGAAGGG TTTACCAGTG AATATCGGTG AACAGATGTT CTTGACTTTG 94841 .......... .......... .......... .......... .......... .......... 554 CTTAATGTGA TAACAAGTAT GTTATGGGGT GGGACGATGA AGGGTGAGGA AAGAGCTAGT 94901 .......... .......... .......... .......... .......... .......... 554 CTTGGAGCTG AGTTTAGGAA TGTTGTAACT GAGATAGTTG ATTTGGTCAG TATTCCCAAT 94961 .......... .......... .......... .......... .......... .......... 554 CTTTCCGATT TTTACCCGGG CTTGACCTGG TTTGATTTCC AGGGTGTTAT AAAGAAGATG 95021 .......... .......... .......... .......... .......... .......... 554 AAAGTGGTTC TAAAAAGATT TGATAAGCTA TTTGAAAGCA TGATTGATCA AAGACAAAAA 95081 .......... .......... .......... .......... .......... .......... 554 TTGGACAGAA ATGGAGTTGG CCGAGAAAGC AAAAACTTTT TGCAAGTTCT GCTGAAGTTG 95141 .......... .......... .......... .......... .......... .......... 554 AAAGATGTAG CAGATGCCAA AATGCCTCTG ACCATGACTG AAATCAAAGC CTTACTTATG 95201 .......... .......... .......... .......... .......... .......... 554 GTATGTTTAT CATTTGTGCA TTCTACTAGA TTTGTTTTAT CCATATGAAC CAAAAAGAAA 95261 .......... .......... .......... .......... .......... .......... 554 TCTTCCTCTC CCCAGTTATC ACTGCATTAT TATTGAGTAG CCAAGA 95307 ||| |||||| | | || | || |||| .......... .....GAATC TGTGCATT-T TCTTTACTAT GTAAGA 584 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (91722 92275) ******************************************************************************** EST sequence 294 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 90676 to 95001): Exon 1 91916 92170 ( 255 n); cDNA 1 255 ( 255 n); score: 0.863 Intron 1 92171 93274 (1104 n); Pd: 0.000 (s: 0.72), Pa: 0.983 (s: 0) Exon 2 93275 93286 ( 12 n); cDNA 256 266 ( 11 n); score: 0.583 Intron 2 93287 93347 ( 61 n); Pd: 0.893 (s: 0), Pa: 0.441 (s: 0) Exon 3 93348 93354 ( 7 n); cDNA 267 273 ( 7 n); score: 0.714 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.863 274 0.757 C PGS_C08HBa0060C12.1+_SGN-E234103- (91916 92170,93275 93286,93348 93354) Alignment (genomic DNA sequence = upper lines): CTTCTATCTG GAAAAGTCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAA AATAAATGGG 91975 ||||||| || | ||| |||| || |||||| |||||||||| ||||||||| ||||| |||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ACTATAGTGA AAATGATTTC AACTATTTCC CATTTGGTTC TGGAAGAAGA ATCTGTGCGG 92035 | ||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGCCAT GGCAGACAGG ATGTTCACGT ATTCACTGGC TTCGATCATT CATTCTTTCG 92095 |||||| ||| |||| | ||| ||||||| || |||||||||| ||| || | |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCCCAAGGA GAAACATTGG ACGTTACGGA GAAGTTCAGT AGTATTTTGA 92155 |||||||||| ||| ||||| || ||||| | || | || || |||||| | | | || ||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAGAAAAT ACCTCTGGTG GCTTTACCTA CTCCAAGATA GTCCAATTCA ACACTGTATG 92215 ||||||| || || AGAAGAAGAT GTCTT..... .......... .......... .......... .......... 255 AGTAAGATAA AAATGTGTTA GTAGAGAGCC GTGTTCTGTA TGATGATTTT ATCTTTTGTA 92275 .......... .......... .......... .......... .......... .......... 255 TTATGAATTA TAAAAACGGG ATCCACTATA TAAATAAAGA TATAAAATAT CGAGAGAAAT 92335 .......... .......... .......... .......... .......... .......... 255 AACCTCACAA AATTAGCTCA ACTTAAAAAG AGGCTCACAC TAGTGATAAA GTACCACTTG 92395 .......... .......... .......... .......... .......... .......... 255 TGTCTCACAA AAATCTCTCC CTAAATAAAA CTCTCAGAGC CCTTAGGATT ATATTGTAAA 92455 .......... .......... .......... .......... .......... .......... 255 TTCTACCAAG TTAGAAGTAA TGAGCCTCTT TTTATAGAAC TAGCTTTGAG AACGTGCTTT 92515 .......... .......... .......... .......... .......... .......... 255 GCATGTTTAT TCCAAAAACT TAAATTGTAA ATATAAATTT TATATAGTAT ATTATATCAC 92575 .......... .......... .......... .......... .......... .......... 255 TTTCTTTGTG CTGTGGACTA AAAATGATAA CGTATAAAAA GAACAAAAAC TAAGTTATAG 92635 .......... .......... .......... .......... .......... .......... 255 AGTCATTTTA GTCTAGCAAT GCTTACCTTA ACATATATAC TTAATTGGTT GTAACTCAAC 92695 .......... .......... .......... .......... .......... .......... 255 TATATCAAGA TCTCTTGAAA CTTATCAGTT ATCTTACAAC AACATATATA CAAAGATTTT 92755 .......... .......... .......... .......... .......... .......... 255 ATGATGATGC TAAAATTTTG TACGAAGTTA CCTAACATAT CATTGATTTG GTCCTCTAAG 92815 .......... .......... .......... .......... .......... .......... 255 TTTTTAAAGT TACAAGAGTG ACATTTATGA CATAGTTTTT ATCCATAATA TCATAATCAA 92875 .......... .......... .......... .......... .......... .......... 255 CTAGATAATT AACTGATCAC TGTGTTACGA AGACCATGAG TCCATGACTT TTTTGGGATC 92935 .......... .......... .......... .......... .......... .......... 255 ACTGATTAGC TAGAGTCATT ATAGCATCCA ATAAGAAGTA TATTTAACAA CAACTATTAA 92995 .......... .......... .......... .......... .......... .......... 255 TTTTATAGTA TGTACATAAC TTTCTGAGAT GAGGAAGTTT GAGCAAAAAA AAAATTTAAG 93055 .......... .......... .......... .......... .......... .......... 255 CAATTTCACG CTTGATGTTA AAAGCAGTGT GAATCACTTC AATAATTAAA CTGTCTTCCT 93115 .......... .......... .......... .......... .......... .......... 255 GCAAAACATG GCTTCAAACT TCTAAAACAT GTCTTGCAGC TCTCCTGACA GTTCAATGGT 93175 .......... .......... .......... .......... .......... .......... 255 ACAAATAAAT GAACATCAAA TTCTCCAATA CGTTAGCATG TTTGATAGAT TCTAATAGTT 93235 .......... .......... .......... .......... .......... .......... 255 AAATAATGAA ATAACTCTAA ATATTTGTGC AATGATCAGA GGCGGAGCTA GGTGAGCGTT 93295 | | | | || | .......... .......... .......... .........A TG-GTATTTA G......... 266 TGTGTGTTTG GACGAATTCA CTAGCTATTT TGTGTATCCT GTAATAGCTC AGTGGTAAT 93354 || | || .......... .......... .......... .......... .......... ..TGATTAT 273 hqPGS_C08HBa0060C12.1+_SGN-E234103- (91916 92170) ******************************************************************************** EST sequence 305 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 90696 to 95001): Exon 1 91919 92170 ( 252 n); cDNA 1 253 ( 253 n); score: 0.847 Intron 1 92171 93274 (1104 n); Pd: 0.000 (s: 0.70), Pa: 0.983 (s: 0) Exon 2 93275 93286 ( 12 n); cDNA 254 264 ( 11 n); score: 0.583 Intron 2 93287 93347 ( 61 n); Pd: 0.893 (s: 0), Pa: 0.441 (s: 0) Exon 3 93348 93354 ( 7 n); cDNA 265 271 ( 7 n); score: 0.714 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.847 271 0.753 C PGS_C08HBa0060C12.1+_SGN-E234174- (91919 92170,93275 93286,93348 93354) Alignment (genomic DNA sequence = upper lines): CTATCTGGAA AAGTCCAACA GAG-TTCTGT CCAGAGAGAT TTTTGGAAAA TAAATGGGAC 91977 |||| ||| | || ||| || ||| ||| || |||||||||| ||||||| || ||| ||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TATAGTGAAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GAAGAAGAAT CTGTGCGGGG 92037 ||||||| || |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGCCATGG CAGACAGGAT GTTCACGTAT TCACTGGCTT CGATCATTCA TTCTTTCGAC 92097 |||| ||||| |||| ||||| ||||| |||| |||||||||| | || | || |||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CCCAAGGAGA AACATTGGAC GTTACGGAGA AGTTCAGTAG TATTTTGAAG 92157 |||||||||| | ||||||| ||||| | | | || |||| |||| | | | || ||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATAC CTCTGGTGGC TTTACCTACT CCAAGATAGT CCAATTCAAC ACTGTATGAG 92217 ||||| || || AAGAAGATGT CTT....... .......... .......... .......... .......... 253 TAAGATAAAA ATGTGTTAGT AGAGAGCCGT GTTCTGTATG ATGATTTTAT CTTTTGTATT 92277 .......... .......... .......... .......... .......... .......... 253 ATGAATTATA AAAACGGGAT CCACTATATA AATAAAGATA TAAAATATCG AGAGAAATAA 92337 .......... .......... .......... .......... .......... .......... 253 CCTCACAAAA TTAGCTCAAC TTAAAAAGAG GCTCACACTA GTGATAAAGT ACCACTTGTG 92397 .......... .......... .......... .......... .......... .......... 253 TCTCACAAAA ATCTCTCCCT AAATAAAACT CTCAGAGCCC TTAGGATTAT ATTGTAAATT 92457 .......... .......... .......... .......... .......... .......... 253 CTACCAAGTT AGAAGTAATG AGCCTCTTTT TATAGAACTA GCTTTGAGAA CGTGCTTTGC 92517 .......... .......... .......... .......... .......... .......... 253 ATGTTTATTC CAAAAACTTA AATTGTAAAT ATAAATTTTA TATAGTATAT TATATCACTT 92577 .......... .......... .......... .......... .......... .......... 253 TCTTTGTGCT GTGGACTAAA AATGATAACG TATAAAAAGA ACAAAAACTA AGTTATAGAG 92637 .......... .......... .......... .......... .......... .......... 253 TCATTTTAGT CTAGCAATGC TTACCTTAAC ATATATACTT AATTGGTTGT AACTCAACTA 92697 .......... .......... .......... .......... .......... .......... 253 TATCAAGATC TCTTGAAACT TATCAGTTAT CTTACAACAA CATATATACA AAGATTTTAT 92757 .......... .......... .......... .......... .......... .......... 253 GATGATGCTA AAATTTTGTA CGAAGTTACC TAACATATCA TTGATTTGGT CCTCTAAGTT 92817 .......... .......... .......... .......... .......... .......... 253 TTTAAAGTTA CAAGAGTGAC ATTTATGACA TAGTTTTTAT CCATAATATC ATAATCAACT 92877 .......... .......... .......... .......... .......... .......... 253 AGATAATTAA CTGATCACTG TGTTACGAAG ACCATGAGTC CATGACTTTT TTGGGATCAC 92937 .......... .......... .......... .......... .......... .......... 253 TGATTAGCTA GAGTCATTAT AGCATCCAAT AAGAAGTATA TTTAACAACA ACTATTAATT 92997 .......... .......... .......... .......... .......... .......... 253 TTATAGTATG TACATAACTT TCTGAGATGA GGAAGTTTGA GCAAAAAAAA AATTTAAGCA 93057 .......... .......... .......... .......... .......... .......... 253 ATTTCACGCT TGATGTTAAA AGCAGTGTGA ATCACTTCAA TAATTAAACT GTCTTCCTGC 93117 .......... .......... .......... .......... .......... .......... 253 AAAACATGGC TTCAAACTTC TAAAACATGT CTTGCAGCTC TCCTGACAGT TCAATGGTAC 93177 .......... .......... .......... .......... .......... .......... 253 AAATAAATGA ACATCAAATT CTCCAATACG TTAGCATGTT TGATAGATTC TAATAGTTAA 93237 .......... .......... .......... .......... .......... .......... 253 ATAATGAAAT AACTCTAAAT ATTTGTGCAA TGATCAGAGG CGGAGCTAGG TGAGCGTTTG 93297 | | | | ||| .......... .......... .......... .......ATG -GTATTTAG. .......... 264 TGTGTTTGGA CGAATTCACT AGCTATTTTG TGTATCCTGT AATAGCTCAG TGGTAAT 93354 || | || .......... .......... .......... .......... .......... TGATTAT 271 hqPGS_C08HBa0060C12.1+_SGN-E234174- (91919 92170) ******************************************************************************** EST sequence 35 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 94086 to 97052): Exon 1 94767 95201 ( 435 n); cDNA 1 435 ( 435 n); score: 0.929 Intron 1 95202 95633 ( 432 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 0.94) Exon 2 95634 95920 ( 287 n); cDNA 436 722 ( 287 n); score: 0.930 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.929 722 1.000 C PGS_C08HBa0060C12.1+_SGN-E378935+ (94767 95201,95634 95920) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAATTACTT GTATAGTCAG AAGGGTTTAC CAGTGAATAT CGGTGAACAG 94826 |||| ||| | |||||||||| |||||||||| | |||||||| |||||||| | ||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTTTGCTTAA TGTGATAACA AGTATGTTAT GGGGTGGGAC GATGAAGGGT 94886 |||||||||| || ||||||| |||||| ||| || ||||||| |||| || || |||||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGTCTTGG AGCTGAGTTT AGGAATGTTG TAACTGAGAT AGTTGATTTG 94946 |||||||||| ||| |||||| |||||||||| ||| |||||| | |||||||| || ||| ||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 GTCAGTATTC CCAATCTTTC CGATTTTTAC CCGGGCTTGA CCTGGTTTGA TTTCCAGGGT 95006 ||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTATAAAGA AGATGAAAGT GGTTCTAAAA AGATTTGATA AGCTATTTGA AAGCATGATT 95066 |||||||||| |||| || || | | ||||| |||||||||| || ||||||| |||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGGA CAGAAATGGA GTTGGCCGAG AAAGCAAAAA CTTTTTGCAA 95126 |||||||||| ||||||| || ||||||||| ||||||| || |||||||| | |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTCTGCTGA AGTTGAAAGA TGTAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 95186 ||| |||| | |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCATTT GTGCATTCTA CTAGATTTGT TTTATCCATA 95246 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TGAACCAAAA AGAAATCTTC CTCTCCCCAG TTATCACTGC ATTATTATTG AGTAGCCAAG 95306 .......... .......... .......... .......... .......... .......... 435 ATGCAACCAT TCATACCTTA TCTATATGGA TTATTTATTA GCTTACAAAG TTACACTGAT 95366 .......... .......... .......... .......... .......... .......... 435 CATGATGGCA GATCTTTTTT TTTTAATATT ATTGAACAAT TATAGTGTAA TAAATATTAG 95426 .......... .......... .......... .......... .......... .......... 435 ATTCGTATAT TCATTTTCTG AACTGTAAGT TGCTACCATG TTAATGGACT GACTTAAGGA 95486 .......... .......... .......... .......... .......... .......... 435 TAGAGTCGGC AAATTTAGCA TCATCAGATA ATATGTGAAG ACTTAACTGT GAATTATGAC 95546 .......... .......... .......... .......... .......... .......... 435 CGAGTACCTT GAACTGAACT CCAATGTACA GTTCTACGAA TAAAAACTTG TTGTACATGA 95606 .......... .......... .......... .......... .......... .......... 435 TACTAAATTC ACAAATACTA TGGACAGGAT ATGGTTGTCG CTGGAACTGA CACAACCTCC 95666 ||| ||||||||| ||||||||| |||||| ||| .......... .......... .......GAT TTGGTTGTCG GTGGAACTGA CACAACTTCC 468 AACGCGGTTG AGTTTGCCCT GGCTGAAATT TTGAACAAAC CAGACGTCCT GAGGAAAGTA 95726 |||||||||| |||||||| | |||||||||| |||||||||| |||| |||| ||| ||| || AACGCGGTTG AGTTTGCCAT GGCTGAAATT TTGAACAAAC CAGATATCCT GAGAAAAATA 528 CAACAAGAAG TAGATACAGT TGTGGGAAAA GATAATATAG TAGAAGAGTC TCATATTCAA 95786 |||||||||| |||||||||| |||||||||| ||||| |||| | |||||||| |||||||||| CAACAAGAAG TAGATACAGT TGTGGGAAAA GATAACATAG TGGAAGAGTC TCATATTCAA 588 CAGTTACCGT ATCTCTATGC AGTGATGAAA GAAGCGATGC GCATGCATCC AGCCCTCCCA 95846 |||||||| | |||||||||| |||||||||| ||||| |||| |||| ||||| |||||||||| CAGTTACCAT ATCTCTATGC AGTGATGAAA GAAGCCATGC GCATACATCC AGCCCTCCCA 648 CTCTTGGCTC CTCATTCTCC TAGTGAGACA GTCACTGTTG GAGGATATAC TGTTCCTAAA 95906 |||||||||| |||||| ||| |||||||||| ||||||||| | ||||| || |||||||||| CTCTTGGCTC CTCATTGTCC TAGTGAGACA ATCACTGTTG GTGGATACAC TGTTCCTAAA 708 GGATCTTGTA TTTT 95920 || ||| || |||| GGGTCTCGTG TTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (94767 95201,95634 95920) ******************************************************************************** EST sequence 179 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 94086 to 96580): Exon 1 94767 95201 ( 435 n); cDNA 1 435 ( 435 n); score: 0.929 Intron 1 95202 95633 ( 432 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 0.94) Exon 2 95634 95736 ( 103 n); cDNA 436 538 ( 103 n); score: 0.922 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.928 538 1.000 C PGS_C08HBa0060C12.1+_SGN-E206806+ (94767 95201,95634 95736) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAATTACTT GTATAGTCAG AAGGGTTTAC CAGTGAATAT CGGTGAACAG 94826 |||| ||| | |||||||||| |||||||||| | |||||||| |||||||| | ||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTTTGCTTAA TGTGATAACA AGTATGTTAT GGGGTGGGAC GATGAAGGGT 94886 |||||||||| || ||||||| |||||| ||| || ||||||| |||| || || |||||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGTCTTGG AGCTGAGTTT AGGAATGTTG TAACTGAGAT AGTTGATTTG 94946 |||||||||| ||| |||||| |||||||||| ||| |||||| | |||||||| || ||| ||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 GTCAGTATTC CCAATCTTTC CGATTTTTAC CCGGGCTTGA CCTGGTTTGA TTTCCAGGGT 95006 ||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTATAAAGA AGATGAAAGT GGTTCTAAAA AGATTTGATA AGCTATTTGA AAGCATGATT 95066 |||||||||| |||| || || | | ||||| |||||||||| || ||||||| |||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATCAAAGAC AAAAATTGGA CAGAAATGGA GTTGGCCGAG AAAGCAAAAA CTTTTTGCAA 95126 |||||||||| ||||||| || ||||||||| ||||||| || |||||||| | |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTCTGCTGA AGTTGAAAGA TGTAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 95186 ||| |||| | |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTTATCATTT GTGCATTCTA CTAGATTTGT TTTATCCATA 95246 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 TGAACCAAAA AGAAATCTTC CTCTCCCCAG TTATCACTGC ATTATTATTG AGTAGCCAAG 95306 .......... .......... .......... .......... .......... .......... 435 ATGCAACCAT TCATACCTTA TCTATATGGA TTATTTATTA GCTTACAAAG TTACACTGAT 95366 .......... .......... .......... .......... .......... .......... 435 CATGATGGCA GATCTTTTTT TTTTAATATT ATTGAACAAT TATAGTGTAA TAAATATTAG 95426 .......... .......... .......... .......... .......... .......... 435 ATTCGTATAT TCATTTTCTG AACTGTAAGT TGCTACCATG TTAATGGACT GACTTAAGGA 95486 .......... .......... .......... .......... .......... .......... 435 TAGAGTCGGC AAATTTAGCA TCATCAGATA ATATGTGAAG ACTTAACTGT GAATTATGAC 95546 .......... .......... .......... .......... .......... .......... 435 CGAGTACCTT GAACTGAACT CCAATGTACA GTTCTACGAA TAAAAACTTG TTGTACATGA 95606 .......... .......... .......... .......... .......... .......... 435 TACTAAATTC ACAAATACTA TGGACAGGAT ATGGTTGTCG CTGGAACTGA CACAACCTCC 95666 ||| ||||||||| ||||||||| |||||| ||| .......... .......... .......GAT TTGGTTGTCG GTGGAACTGA CACAACTTCC 468 AACGCGGTTG AGTTTGCCCT GGCTGAAATT TTGAACAAAC CAGACGTCCT GAGGAAAGTA 95726 |||||||||| |||||||| | |||||||||| |||||||||| |||| |||| ||| ||| || AACGCGGTTG AGTTTGCCAT GGCTGAAATT TTGAACAAAC CAGATATCCT GAGAAAAATA 528 CAACAAGAAG 95736 |||||||||| CAACAAGAAG 538 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (94767 95201,95634 95736) ******************************************************************************** EST sequence 329 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 89731 to 97356): Exon 1 95158 95201 ( 44 n); cDNA 1 44 ( 44 n); score: 1.000 Intron 1 95202 95633 ( 432 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 0.94) Exon 2 95634 96264 ( 631 n); cDNA 45 675 ( 631 n); score: 0.927 Intron 2 96265 96308 ( 44 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0.86) Exon 3 96309 96362 ( 54 n); cDNA 676 728 ( 53 n); score: 0.870 MATCH C08HBa0060C12.1+ SGN-E378974- 0.923 729 1.001 C PGS_C08HBa0060C12.1+_SGN-E378974- (95158 95201,95634 96264,96309 96362) Alignment (genomic DNA sequence = upper lines): CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGTATGT TTATCATTTG 95217 |||||||||| |||||||||| |||||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 TGCATTCTAC TAGATTTGTT TTATCCATAT GAACCAAAAA GAAATCTTCC TCTCCCCAGT 95277 .......... .......... .......... .......... .......... .......... 44 TATCACTGCA TTATTATTGA GTAGCCAAGA TGCAACCATT CATACCTTAT CTATATGGAT 95337 .......... .......... .......... .......... .......... .......... 44 TATTTATTAG CTTACAAAGT TACACTGATC ATGATGGCAG ATCTTTTTTT TTTAATATTA 95397 .......... .......... .......... .......... .......... .......... 44 TTGAACAATT ATAGTGTAAT AAATATTAGA TTCGTATATT CATTTTCTGA ACTGTAAGTT 95457 .......... .......... .......... .......... .......... .......... 44 GCTACCATGT TAATGGACTG ACTTAAGGAT AGAGTCGGCA AATTTAGCAT CATCAGATAA 95517 .......... .......... .......... .......... .......... .......... 44 TATGTGAAGA CTTAACTGTG AATTATGACC GAGTACCTTG AACTGAACTC CAATGTACAG 95577 .......... .......... .......... .......... .......... .......... 44 TTCTACGAAT AAAAACTTGT TGTACATGAT ACTAAATTCA CAAATACTAT GGACAGGATA 95637 ||| .......... .......... .......... .......... .......... ......GATT 48 TGGTTGTCGC TGGAACTGAC ACAACCTCCA ACGCGGTTGA GTTTGCCCTG GCTGAAATTT 95697 ||||||||| |||||||||| ||||| |||| |||||||||| ||||||| || |||||||||| TGGTTGTCGG TGGAACTGAC ACAACTTCCA ACGCGGTTGA GTTTGCCATG GCTGAAATTT 108 TGAACAAACC AGACGTCCTG AGGAAAGTAC AACAAGAAGT AGATACAGTT GTGGGAAAAG 95757 |||||||||| ||| ||||| || ||| ||| |||||||||| |||||||||| |||||||||| TGAACAAACC AGATATCCTG AGAAAAATAC AACAAGAAGT AGATACAGTT GTGGGAAAAG 168 ATAATATAGT AGAAGAGTCT CATATTCAAC AGTTACCGTA TCTCTATGCA GTGATGAAAG 95817 |||| ||||| ||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ATAACATAGT GGAAGAGTCT CATATTCAAC AGTTACCATA TCTCTATGCA GTGATGAAAG 228 AAGCGATGCG CATGCATCCA GCCCTCCCAC TCTTGGCTCC TCATTCTCCT AGTGAGACAG 95877 |||| ||||| ||| |||||| |||||||||| |||||||||| ||||| |||| ||||||||| AAGCCATGCG CATACATCCA GCCCTCCCAC TCTTGGCTCC TCATTGTCCT AGTGAGACAA 288 TCACTGTTGG AGGATATACT GTTCCTAAAG GATCTTGTAT TTTCGTAAAT GTATGGGCTA 95937 |||||||||| ||||| ||| |||||||||| | ||| || | ||| |||||| |||||||||| TCACTGTTGG TGGATACACT GTTCCTAAAG GGTCTCGTGT TTTTGTAAAT GTATGGGCTA 348 TACACAGAGA TCCTTCTATC TGGAAAAATC CAACAGAGTT CCGTCCTGAG AGATTTTTGG 95997 |||||||||| ||||||||| |||||||||| |||||||||| | |||| ||| |||||||||| TACACAGAGA TCCTTCTATG TGGAAAAATC CAACAGAGTT CTGTCCAGAG AGATTTTTGG 408 ACAATAAATG GGATTATAGT GGTAATGACT TCAACTATTT CCCATTTGGT TCTGGAAGAA 96057 | |||||||| | |||||||| || ||||| | |||||||||| |||||||||| ||||| |||| ATAATAAATG GAATTATAGT GGAAATGATT TCAACTATTT CCCATTTGGT TCTGGCAGAA 468 GAATGTGTGC GGGGACAGCC ATGGCAGAGA GGATGTTCAT GTATTCATTG GCTTCGCTCA 96117 |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| || ||||| |||| GAATGTGTGC GGGGATAGCC ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTCA 528 TCCATTCTTT CGATTGGAAA TTACCCGAAG GAGAGACGTT AGACCTTAAA GAGAAGTTTG 96177 | |||||||| |||||||||| || || |||| |||||||||| |||||||||| ||||||||| TTCATTCTTT CGATTGGAAA TTGCCTGAAG GAGAGACGTT AGACCTTAAA GAGAAGTTTT 588 GTATTACTTT GAAGAAGAAA ATACCTCTGG TGGCTATACC TACTCCAAGA TTATGCAATC 96237 ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| || | ||||| GTATTGCTTT GAAGAAGAAA ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCCAATC 648 CAACATTGTA TGAGTAAGAT TTTAAAGAAA AAAAAAGTAT CAGTGTTAAG TGTTATGTGC 96297 ||||| ||| |||||||||| || | CAACACAGTA TGAGTAAGAT AAAAATG... .......... .......... .......... 675 TAATGTGTAA GTATCAGTGT TATGTGCTAA TGTCTTTCAA AGACTAATAT TAATGAGCAT 96357 ||||| ||| |||||||||| |||||||||| |||| ||| | ||| ||| .......... .TATCACTGT TATGTGCTAA TGTCTTTCAA AGACAAATGA T-TTGAACAT 723 TGAAT 96362 ||||| TGAAT 728 hqPGS_C08HBa0060C12.1+_SGN-E378974- (95158 95201,95634 96264,96309 96362) ******************************************************************************** EST sequence 83 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 93657 to 96220): Exon 1 94257 95069 ( 813 n); cDNA 1 813 ( 813 n); score: 0.886 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.886 813 0.999 C PGS_C08HBa0060C12.1+_SGN-E553649+ (94257 95069) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTTC CATGGCCCCT ACAACAACTC 94316 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ||||||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATGTTGAGC AAAAGGGTGT GTTTTTCTCC TGTTTTCTTG GGTTCTTAGC TTTACTTTGG 94376 |||||||||| || ||| | | ||||||| | |||||||||| | || ||||| |||||||||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TGTTTCATCA GAAACTCAAA CAAGGGATTG CCACCAGGGC CTGAAGCTTT GCCCTTGATA 94436 | |||||||| | ||||| || ||| || || |||||||||| || ||||||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCAAAACA 94496 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||| GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 240 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT AAAAAAATTG GGATTATTAT TAGTTCGCCT 94556 |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| || ||| || TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 300 GCTTTAGCTC GCGAGGTTCT TAAGGATAAA GATACTATTT TTGCAAACAG AGATGTGTCT 94616 | ||||||| |||| ||||| ||||||||| |||| ||||| |||| ||||| ||| ||| || GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 360 GCTGCTGGAA GAGAATTTTC ATATGGTATC AATGACTTAC TTTGGAGTCC TTATGGACCG 94676 ||||||| | |||| |||| ||||||| | |||||| ||| |||||| | | ||||||||| GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 420 AAATGGCGAA TGTTGAGGAA GCTTTGTGTT CGCGATATGC TTAGTTCTTC TAGTATAGAT 94736 ||||||||| || |||| || |||||||||| |||||||||| |||||| ||| || | ||||| CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 480 TCTGTTTATG GACTAAGGAG AAGGGAGCTT AGACAATCGA TCAATTACTT GTATAGTCAG 94796 ||||||| || ||||||| | |||||||||| |||||||||| | |||||||| |||||| || TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 540 AAGGGTTTAC CAGTGAATAT CGGTGAACAG ATGTTCTTGA CTTTGCTTAA TGTGATAACA 94856 |||||||||| ||||||| | ||||| ||| |||||||||| || || |||| |||||| ||| AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 600 AGTATGTTAT GGGGTGGGAC GATGAAGGGT GAGGAAAGAG CTAGTCTTGG AGCTGAGTTT 94916 || ||||||| ||||| | || |||||||| |||||||||| ||| |||||| || |||||| AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 660 AGGAATGTTG TAACTGAGAT AGTTGATTTG GTCAGTATTC CCAATCTTTC CGATTTTTAC 94976 ||| |||||| | | |||||| | || || |||||||| |||||||||| |||||| ||| AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 720 CCGGGCTTGA CCTGGTTTGA TTTCCAGGGT GTTATAAAGA AGATGAAAGT GGTTCTAAAA 95036 || || ||| |||||||||| |||||||||| |||| ||||| ||||||| | | | |||| CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 780 AGATTTGATA AGCTATTTGA AAGCATGATT GAT 95069 |||||||| | || ||||||| ||||||||| ||| AGATTTGAGA AGATATTTGA TAGCATGATT GAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (94257 95069) ******************************************************************************** EST sequence 98 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 92722 to 106125): Exon 1 94263 95035 ( 773 n); cDNA 1 770 ( 770 n); score: 0.854 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.854 773 1.001 C PGS_C08HBa0060C12.1+_SGN-E554337+ (94263 95035) Alignment (genomic DNA sequence = upper lines): CTCAAATTCT -TCAAAC-C- CCTTTTTGAT TCTTTTCCAT GGC-CCCTAC AACAACTCAA 94318 |||| ||||| |||||| | ||||||||| ||||| |||| ||| || | | |||| ||||| CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 60 TGTTGAGCA- AAAGGGTGTG TTTTTCTCCT GTTTTCTTGG GTTCTTAGCT TTACTTTGGT 94377 || |||| | |||| ||| ||||||||| ||||| |||| || |||||| |||||||||| TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 120 GTTTCATCAG AAACTCAAAC AAGGGATTGC CACCAGGGCC TGAAGCTTTG CCCTTGATAG 94437 |||||||||| ||||||||| |||||||||| |||||||||| | || ||||| |||||||||| GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 180 GTAATCTCCA TTCTCTTGAT CCTGAACTTC ACACCTATTT TGCATCTCTG TCCAAAACAT 94497 |||||||| | ||||||||| | | | ||||||||| ||||||||| ||| |||| | GTAATCTCTA TTCTCTTGA- --T---C--C -CACCTATTT TGCATCTCTT TCCCAAACTT 231 ATGGCCCCAT TTGTAGAATC TGGCTTGGTA AAAAAATTGG GATTATTATT AGTTCGCCTG 94557 |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| | ||| ||| ATGGCCCCAT TTGTAGACTC TGGCTTGGTA AAAAAGTTGG GATTATTATT ACTTCACCTA 291 CTTTAGCTCG CGAGGTTCTT AAGGATAAAG ATACTATTTT TGCAAACAGA GATGTGTCTG 94617 | |||||||| ||||||||| |||||||||| | || ||||| ||| |||||| ||||| | | CCTTAGCTCG TGAGGTTCTT AAGGATAAAG ACACCATTTT TGCTAACAGA GATGTCCCAG 351 CTGCTGGAAG AGAATTTTCA TATGGTATCA ATGACTTACT TTGGAGTCCT TATGGACCGA 94677 |||||| || |||||| ||| |||||| || || | |||| ||||| |||| |||||||||| CTGCTGCAAA AGAATTATCA TATGGTGGCA ATAGCATACT TTGGACTCCT TATGGACCGA 411 AATGGCGAAT GTTGAGGAAG CTTTGTGTTC GCGATATGCT TAGTTCTTCT AGTATAGATT 94737 ||||| |||| |||||||||| |||| |||| || ||||||| ||||| |||| | | |||||| AATGGAGAAT GTTGAGGAAG GTTTGCGTTC GCAATATGCT TAGTTATTCT ACTTTAGATT 471 CTGTTTATGG ACTAAGGAGA AGGGAGCTTA GACAATCGAT CAATTACTTG TATAGTCAGA 94797 ||||||||| |||||||| | |||||||||| |||||||||| ||||||||| || ||||||| CTGTTTATGC ACTAAGGAAA AGGGAGCTTA GACAATCGAT CAATTACTTC TACAGTCAGA 531 AGGGTTTACC AGTGAATATC GGTGAACAGA TGTTCTTGAC TTTGCTTAAT GTGATAACAA 94857 |||||||||| ||| ||| | ||||| |||| ||||||||| || |||||| ||||| |||| AGGGTTTACC AGTAAATGTT GGTGAGCAGA TGTTCTTGAG TTCACTTAAT GTGATTACAA 591 GTATGTTATG GGGTGGGACG ATGAAGGGTG AGGAAAGAGC TAGTCTTGGA GCTGAGTTTA 94917 | |||||||| |||||| || ||||||||| |||||||||| || ||||||| |||||||||| GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGA GCTGAGTTTA 651 GGAATGTTGT AACTGAGATA GTTGATTTGG TCAGTATTCC CAATCTTTCC GATTTTTACC 94977 || || |||| ||||| || | || ||| |||||||||| |||| |||| |||||||||| GGCATATTGT CACTGAAATG GCTGCGCTGG TCAGTATTCC CAATTATTCC GATTTTTACC 711 C-GGGCTTGA CCTGGTTTGA TTTCCAGGGT GTTATAAAGA AGATGAAAGT GGTTCTAAA 95035 | ||||||| |||||||||| |||||| ||| ||| ||| | ||||||||| ||| || CGGGGCTTGG CCTGGTTTGA TTTCCAAGGT GTTGCAAAAA AGATGAAAGG TGTTGGCAA 770 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (94263 95035) ******************************************************************************** EST sequence 126 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 93824 to 98381): Exon 1 94424 94909 ( 486 n); cDNA 1 486 ( 486 n); score: 0.868 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.868 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (94424 94909) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGATCCTGAA CTTCACACCT ATTTTGCATC 94483 |||||||||| |||||||||| |||||||||| ||| ||| || |||||||||| |||| ||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTGTCCAAA ACATATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAA TTGGGATTAT 94543 ||| |||||| | ||||||| |||||||||| |||||||||| ||||||||| |||||||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TATTAGTTCG CCTGCTTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACTA TTTTTGCAAA 94603 | ||| ||| ||||| |||| |||||||||| |||||||||| |||||||| | ||||||| || TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGATGTG TCTGCTGCTG GAAGAGAATT TTCATATGGT ATCAATGACT TACTTTGGAG 94663 |||||||||| || ||||| | |||||| | | |||||||| | |||| || |||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TCCTTATGGA CCGAAATGGC GAATGTTGAG GAAGCTTTGT GTTCGCGATA TGCTTAGTTC 94723 |||||||||| || || |||| | |||||||| |||| ||||| |||| || | |||||| | | TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTAGTATA GATTCTGTTT ATGGACTAAG GAGAAGGGAG CTTAGACAAT CGATCAATTA 94783 ||||| | || ||| || ||| ||| ||| || | |||||||| |||||||||| |||| ||||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTGTATAGT CAGAAGGGTT TACCAGTGAA TATCGGTGAA CAGATGTTCT TGACTTTGCT 94843 ||| |||| | |||| || | || ||||| | | |||||| |||||||| | ||||| || CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATA ACAAGTATGT TATGGGGTGG GACGATGAAG GGTGAGGAAA GAGCTAGTCT 94903 ||||||||| ||||| |||| |||||||||| || ||||| |||||||||| |||||| ||| TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGAGC 94909 ||| || TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (94424 94909) ******************************************************************************** EST sequence 200 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 94294 to 100811): Exon 1 95958 96250 ( 293 n); cDNA 3 295 ( 293 n); score: 0.853 Intron 1 96251 97506 (1256 n); Pd: 0.744 (s: 0.94), Pa: 0.145 (s: 0.52) Exon 2 97507 97611 ( 105 n); cDNA 296 388 ( 93 n); score: 0.590 Intron 2 97612 98534 ( 923 n); Pd: 0.000 (s: 0.66), Pa: 0.406 (s: 0) Exon 3 98535 98568 ( 34 n); cDNA 389 423 ( 35 n); score: 0.456 Intron 3 98569 99003 ( 435 n); Pd: 0.000 (s: 0), Pa: 0.332 (s: 0) Exon 4 99004 99024 ( 21 n); cDNA 424 445 ( 22 n); score: 0.643 Intron 4 99025 99544 ( 520 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 5 99545 99688 ( 144 n); cDNA 446 589 ( 144 n); score: 0.733 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.770 597 0.887 C PGS_C08HBa0060C12.1+_SGN-E320419+ (95958 96250,97507 97611,98535 98568,99004 99024,99545 99688) Alignment (genomic DNA sequence = upper lines): TGGAAAAATC CAACAGAGTT CCGTCCTGAG AGATTTTTGG ACAATAAATG GGATTATAGT 96017 ||| |||||| |||| ||||| || ||| || |||||| ||| | |||||||| ||| | ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGTAATGACT TCAACTATTT CCCATTTGGT TCTGGAAGAA GAATGTGTGC GGGGACAGCC 96077 || ||||| | | | ||| || ||| |||||| ||||| |||| |||| |||| |||| |||| GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTATTCATTG GCTTCGCTCA TCCATTCTTT CGATTGGAAA 96137 |||||||||| |||||||||| ||||||| || ||||| || | | |||||||| || |||||| ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 TTACCCGAAG GAGAGACGTT AGACCTTAAA GAGAAGTTTG GTATTACTTT GAAGAAGAAA 96197 || || |||| ||||||| || |||| ||| | |||||||||| | | | |||||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATACCTCTGG TGGCTATACC TACTCCAAGA TTATGCAATC CAACATTGTA TGAGTAAGAT 96257 || ||||||| |||||||||| |||||||||| |||| ||||| ||||| | || ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA....... 295 TTTAAAGAAA AAAAAAGTAT CAGTGTTAAG TGTTATGTGC TAATGTGTAA GTATCAGTGT 96317 .......... .......... .......... .......... .......... .......... 295 TATGTGCTAA TGTCTTTCAA AGACTAATAT TAATGAGCAT TGAATAATTC TAAGTTTCCT 96377 .......... .......... .......... .......... .......... .......... 295 ACTTATAGAT AATGAGTGAT CTTTTCTTCT AATTATGACC GAAATAACTT AATATCATGC 96437 .......... .......... .......... .......... .......... .......... 295 TTTATGATGA TGCTAAAATT TTGGACTAAG TTATCTAACA TAATTAAAAA AGTTGATTCC 96497 .......... .......... .......... .......... .......... .......... 295 CTGAGTCTTC ATGGTTCATC TTCATTAATG AGTGGTCGTT TTGTGTCTTT ATCATCTCTT 96557 .......... .......... .......... .......... .......... .......... 295 TTCTCATAAA TTTCTATATT TATAGTAGTA AACAATGACT TTTTATATGT ATTTTGATAG 96617 .......... .......... .......... .......... .......... .......... 295 TTATCACATG AATTTTGTTT ATGTTATTTA ACAAAATAAT ATATTGAATG CAGGTTTTTA 96677 .......... .......... .......... .......... .......... .......... 295 AATTCTTCTC TTTTATGTAC GGATAAAAGA AAGTTATAGG AATTAAAAAA TGTAATTGAA 96737 .......... .......... .......... .......... .......... .......... 295 GTCGTATAGG TGTAGATTTA TGGATAAATT ATGGGTTAAG GCTATAAAAT AAATTAACTA 96797 .......... .......... .......... .......... .......... .......... 295 CACTTAAATG ACAATAATTC CAATAGATTA ATACACCATT ACATATTTTC TTAATGACTA 96857 .......... .......... .......... .......... .......... .......... 295 TTCCAGTAGG TCATACAAAC TTATAATGTT ATAAATAATA AATACTAATT ATTTAGAATA 96917 .......... .......... .......... .......... .......... .......... 295 TTATCTTTGT CTAGAATTTT TTATCACAAT AAGTCATTAT TAAAATCAAT TTTATCAAAA 96977 .......... .......... .......... .......... .......... .......... 295 TAATATATTT TTCAAAATTT TACAAAATTA GTATAAATGT ATTTTTCAGT AACGTCTTAG 97037 .......... .......... .......... .......... .......... .......... 295 GTTATATTTT ATTAAAAAAA ATTAAATTAC AAAAAAAATA AAGATATGAC AAAATAAATA 97097 .......... .......... .......... .......... .......... .......... 295 GACATATAAC ATTATTGTCA CTGACGTTTT ATAATTCGTT ACTCGAAGGC ATGTTTTCCT 97157 .......... .......... .......... .......... .......... .......... 295 TTTCATACAT AAACAATACT TTTGCAAGAA AAACGAGAGT GAGGAAGGCT TTACCACAAT 97217 .......... .......... .......... .......... .......... .......... 295 ATCAATTAAT TCCTTTGTTT CTTCTGTAAT GATGTAGCCA TTATATTTTT TTTAATAGTT 97277 .......... .......... .......... .......... .......... .......... 295 ATTTTGCTTA GTTGTTGCAT CTGTTTTAAT TCAATAGCCT TTGTATCGAT AATCTAATAT 97337 .......... .......... .......... .......... .......... .......... 295 TTAATAATCA TAAGAAATTG ATTAATCTAA TATTTGAAAG GGATAGTACC CTAGGCTAGA 97397 .......... .......... .......... .......... .......... .......... 295 AAACGATTTC TCATATAATT TATTTATAAA TTTTAAAATT AAAAGGATAC AAGACAAACT 97457 .......... .......... .......... .......... .......... .......... 295 CCAAACTGTG CAAAACTTGC TCATTTTTTT TTCCTTTTAT TGTAAAAAGT ATTGCCAATG 97517 | | ||| | .......... .......... .......... .......... .........G ACAGACAAGG 306 TATGAAAAGA GAGAGAAGTA GAAAATGATA TATTTTTCAA GTGAATATAT GTACAATACA 97577 ||| ||| | || |||| | || || ||| | | || | | || | || TAT-CAAA-A -AGTGAAGAT TCATTTGTGT TAAACAACAA GGGGCCAT-T G-AC--TTCA 359 TATAGATATA TATATATATC TTAATAGTGG AAAAATTGAC AAATGAATGA AGCATGTACA 97637 | | || | ||||| || || | ||||| |||| T-CA-CTA-A -ATATAAATG TTGA-AGTGG AAAA...... .......... .......... 388 AAATTGAATT TTAATTTTAA GTCATTCAAG AGAAATGTTA TTGTGTGTCA CGTTTTAGCT 97697 .......... .......... .......... .......... .......... .......... 388 GTAAAATGTG CCTTAGAATA ATAAATTATA AAATGTTACT GACAATAATA TTTTATGTTT 97757 .......... .......... .......... .......... .......... .......... 388 GTTTACTTTG TCGAATTTTT GTTTTTCTGT GATCAATTTT TTTTGAATAA AATATAACAT 97817 .......... .......... .......... .......... .......... .......... 388 AAAAAGTTCT AGAGAAATAC GTTGATACTA GTTTTGTAAA CTTTCAAAAA AGCATATTAT 97877 .......... .......... .......... .......... .......... .......... 388 CCTTGTGAAT TAATTTTAAT AATGACTTAT TTTATAAAAA ATTCTCTTTT CCTATTCCGA 97937 .......... .......... .......... .......... .......... .......... 388 CTATATCATT GATTTGGTCC TCTAAGTTTT TATTGTTACA AACATTTATG AGATAATCTT 97997 .......... .......... .......... .......... .......... .......... 388 TCCCATAATC AAATAGGTAA TCAATTGGTC ACTTTGTAAC TTAAATATGA ATATGATCAC 98057 .......... .......... .......... .......... .......... .......... 388 TTCATAACTC TTTAGTTTGC AAATAAGTTA GGAGGTAAAA AGGTTGTAAA ATATTTTGAT 98117 .......... .......... .......... .......... .......... .......... 388 TAATTAATAC TTGATTTATA GATACTATCA CAATTTGAAT TAGGATAGGG GTAAAATGGT 98177 .......... .......... .......... .......... .......... .......... 388 ATTACCTTTA TGACTTTTCA CTTTTAGTAT AACTAATATC TAGACACGTG CACGTGTATT 98237 .......... .......... .......... .......... .......... .......... 388 CCATATTAAT TTGTTCAATT TTTTTCATTG AGATGAATGG AGTATATAAT AGTTAAATAT 98297 .......... .......... .......... .......... .......... .......... 388 ATTGGTTTTG AAAAATGCAA GCTTATTCTT ACTAAAATAA AGAAACTAAA ACACATATCA 98357 .......... .......... .......... .......... .......... .......... 388 ATTCTCTCTT AACATATAAA GTAGAAACAA CGGCTAAAAG TATAATAAAA GTATTTGAAA 98417 .......... .......... .......... .......... .......... .......... 388 GCTAAAATTA AAATATTGCA TGCCGGAATA ATAATATATG TGTCTAAACT TTCATATACA 98477 .......... .......... .......... .......... .......... .......... 388 ATGATACATA AACATTGTGT ATTACAATAA CTTTGCGTTG AACTTTGTTT GGTGAAGTTG 98537 | | .......... .......... .......... .......... .......... .......TGG 391 ATGTTATCCT CTCAAATTGT TGC-TTTCTC TTCACGAACA AAAAAGAAGA TGAAATTAAG 98596 | || | | || | | |||||| | CTTCCCACCA CACTGTTTCT GCCATTTCTC TC........ .......... .......... 423 ATCAATTTTT ATTACATAGA CTAATTAGGC GAAAAACTTG AATTATATTA ATACTAGTAT 98656 .......... .......... .......... .......... .......... .......... 423 AAGATTACTA TAACATCACA ATAAATTATA TTAGCTTCAT AGGTACATTA TGTTCATCCC 98716 .......... .......... .......... .......... .......... .......... 423 ACAAATATGC GAAAATAAGA TGAAATAAAG AAAGAAGAGC AACTTTCACA TATAGCAAAT 98776 .......... .......... .......... .......... .......... .......... 423 ACAAAATTCA TATTTGTATG TTATAGCAAA GTTTGCGTAA TTGTGCTTCA TAGCAAAAAT 98836 .......... .......... .......... .......... .......... .......... 423 AAATACTATA CATATACAAA AAGAAACAGT TATATAATTT GTTATACATA TATAAAGAAA 98896 .......... .......... .......... .......... .......... .......... 423 CCAATAATAT AATTAGCTAT ATATATACAA AAGAAAGCAG TTGTATACAA ATCAATTGTA 98956 .......... .......... .......... .......... .......... .......... 423 TAATTTGAGT ATAGGACGAA GATATATGTA TTTACATGTG TTTGTAGAAT TTTCT-TTCG 99015 | | ||||| || | .......... .......... .......... .......... .......ATT TTTCTCTTAG 436 CTTGATACAA ACAGAAATGC AATTTATACA TTTCGTTTTT GTTTGTATAA GCGATAGAGG 99075 ||||| | GCTGATATA. .......... .......... .......... .......... .......... 445 CAAGGGTGGC GAGCGATATC TGGGAGAGGG GAGAGAGGGA ACGAAAATAT GTGTATAAAT 99135 .......... .......... .......... .......... .......... .......... 445 AAATTTTTTC TCCTTTATAC AAACACAAAT ACATTTTATA CATTTGTGTT TGTATAAAAG 99195 .......... .......... .......... .......... .......... .......... 445 CGAGAGGGAG GGAGGGAGTG AGAGAGATAG AGTGGCAAGC GAGAGTTAAA GGGAAAGAGA 99255 .......... .......... .......... .......... .......... .......... 445 TGGACTGACT AACAGTTTGC TACATGGCAC AATTAAAGCA AAGTGTGGTT ATAACATTTA 99315 .......... .......... .......... .......... .......... .......... 445 ATTTGATTTA TTAGTTGTCA TTGTATACAA ATTTTCCAAG AAAGAAAGCT GCGGAAAATT 99375 .......... .......... .......... .......... .......... .......... 445 GAATGATGAA CGACATGAAA ATTTCGTTTC AATTAACATC ATGAGTATCA GCAGGTGACT 99435 .......... .......... .......... .......... .......... .......... 445 CTGCTTTTTT TCATCCTGCT GCTCTTTTTT TCTTCATATA AATTATCTCA TTCTTTCAGC 99495 .......... .......... .......... .......... .......... .......... 445 AAAATCAGAA GAAAAAAAAA AGCATCTTTT AGCAGTGCAA AAGCTTTAGA TGTCTCTCAA 99555 | |||| || || .......... .......... .......... .......... .........A TGTCACTAAA 456 ATTCTTCAAA CCCCTTTTTG ATTCTTTCCC ATGGCTCCTT CAACAACTCA ATGTGGAGCA 99615 |||||||||| || | | || |||||||||| ||||| | ||| ||| | || ||| | ATTCTTCAAA CCTTTGTGTG ATTCTTTCCC ATGGCCCTGG CAAGAACAAA ATAGTGAGAA 516 AAATGGTGTG TTTTTCTTCT GTTTTCTTGG TTTTTTAGCT TTACTTTGGT TT-TTCATCA 99674 | |||||| ||||||| || | ||||||| ||||||| ||| | |||| || || | GAGTGGTGTA TTTTTCTCCT ATGTTCTTGG CAGTTTAGCT TTAATATGGT TTCTTTGTTT 576 GTAACTCGAA CAAG 99688 || || || |||| TTACATC-AA CAAG 589 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (95958 96250,97507 97611,98535 98568,99004 99024,99545 99688) ******************************************************************************** EST sequence 135 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 95247 to 98494): Exon 1 96018 96250 ( 233 n); cDNA 1 233 ( 233 n); score: 0.884 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.884 233 0.879 C PGS_C08HBa0060C12.1+_SGN-E243190+ (96018 96250) Alignment (genomic DNA sequence = upper lines): GGTAATGACT TCAACTATTT CCCATTTGGT TCTGGAAGAA GAATGTGTGC GGGGACAGCC 96077 || ||||| | |||||||| | |||||||||| |||||||||| || |||| || ||||| || | GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCATTG GCTTCGCTCA TCCATTCTTT CGATTGGAAA 96137 |||||||||| |||||||||| ||||||| | |||||||||| | |||||||| ||| |||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTACCCGAAG GAGAGACGTT AGACCTTAAA GAGAAGTTTG GTATTACTTT GAAGAAGAAA 96197 || || |||| |||||||||| |||||| | | |||||||||| | ||| | | |||||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATACCTCTGG TGGCTATACC TACTCCAAGA TTATGCAATC CAACATTGTA TGA 96250 || ||||||| |||||||||| |||||||||| || | ||| ||| | | || ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGA 233 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (96018 96250) ******************************************************************************** EST sequence 34 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 99077 to 104707): Exon 1 100055 100489 ( 435 n); cDNA 1 435 ( 435 n); score: 0.887 Intron 1 100490 101064 ( 575 n); Pd: 0.997 (s: 0.92), Pa: 0.997 (s: 0.82) Exon 2 101065 101351 ( 287 n); cDNA 436 722 ( 287 n); score: 0.822 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.861 722 1.000 C PGS_C08HBa0060C12.1+_SGN-E378935+ (100055 100489,101065 101351) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAGTTACTT TTATAACAAG GCAGGATCCC CTGTGAATGT TGGTGAACAG 100114 |||| ||| | ||| |||||| |||| || || | | | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTATTCTTAA TGTGATTACA AGCATGTTAT GGGGTGGTAC AGTGAAGGGT 100174 |||||||||| || | ||||| |||||| ||| |||||||||| |||| || || |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGCCTTGG AGCTGAGTTT AGGTATGTTG TGACTGAGAT AGCTTCATTG 100234 |||||||||| ||| ||||| |||||||||| ||| |||||| |||||||||| |||| ||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TGCAGTGTTC CCAATCTTTC CGATTTTTAC CCAGGCTTGG CCTGGTTTGA TTTCCAGGGT 100294 |||| ||| |||||||||| ||||||||| || ||||||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTGCAAAGA AGATGAAGGT GCTGGTAAAA AGATTTGATA AGATATTTGA GAGCATAATT 100354 ||| ||||| |||| ||||| | || |||| |||||||||| |||||||||| ||||| ||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 AATCAAAGAC AAAAATTGGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTCTTGCAA 100414 ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||| |||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTAA AGCTGAAAGA TGAAGCAGAT CCCAATATGC CTCTAACCAT GATTGAAATC 100474 |||||||| | || ||||||| |||||||||| |||| |||| |||| ||||| || ||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTATCAGTTG TGCATTCTAC GAAATTCGTT TTTTTTTTCA 100534 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 AATGAATCAA AAATAATTGT TATTCGCCAA GATTGATTTG TCATCAACCA TTCATACTAT 100594 .......... .......... .......... .......... .......... .......... 435 GCATTAATTA TTAGCTTACA CTGATCATGA TGGAATCTTT TATTTTTTTA TATTTAAAGG 100654 .......... .......... .......... .......... .......... .......... 435 ATCAATATCA TTGTGTCATA TGGTTGCGTT CTTCTTCTAG GAAACATGTG GTGTTGGTTA 100714 .......... .......... .......... .......... .......... .......... 435 TAAAGTTTGC ATTATACTTG AAATGATCCA TTTCCTTACC TGGTTGGCAG TTAACGGATG 100774 .......... .......... .......... .......... .......... .......... 435 AAAAATTGGC TTATAGTGAT ATCAGTCAAA ATATGAGGAT CAAATGCTAA TAAAAGATAA 100834 .......... .......... .......... .......... .......... .......... 435 AATTGGGATC ACAAATGTAT TGAAGAATTA TTGTGTAATA GATATTAGAT TCATATATTC 100894 .......... .......... .......... .......... .......... .......... 435 ATGTTCCGAA GAACTGTTAG TTGCTACCAT GTTAATGGAC TGCCTTAAGG AAAGAGTTGG 100954 .......... .......... .......... .......... .......... .......... 435 CAAATTTAGC ATCAGATAAT ATGTGAAGAC TTAACCGTGA ATTAAGACGG AACTGAACTT 101014 .......... .......... .......... .......... .......... .......... 435 CAATTAAAAA TTGTTGTACA TGATAATAAT TTCACAAATA CTATGGACAG GATATGATTC 101074 ||| || || .......... .......... .......... .......... .......... GATTTGGTTG 445 TTGGTGGAAC TGACAGTACC TCCAACACGA TTGAGTTTGC GATGGCTGAA ATTATGAACA 101134 | |||||||| ||||| || |||||| || |||||||||| ||||||||| ||| |||||| TCGGTGGAAC TGACACAACT TCCAACGCGG TTGAGTTTGC CATGGCTGAA ATTTTGAACA 505 AACCATACGT CCTGAGGAAA TTACAAGAAG AACTGGAGAC AGTTGTGGGA AAAGACAATA 101194 ||||| | | |||||| ||| ||||| ||| || | || || |||||||||| ||||| || | AACCAGATAT CCTGAGAAAA ATACAACAAG AAGTAGATAC AGTTGTGGGA AAAGATAACA 565 TTGTGGATGA GTCTCATATT AAGAAATTAC CATATCTTTA TGCAGTTATG AAAGAAGTCT 101254 | ||||| || |||||||||| | | |||| ||||||| || |||||| ||| ||||||| | TAGTGGAAGA GTCTCATATT CAACAGTTAC CATATCTCTA TGCAGTGATG AAAGAAGCCA 625 TGCGCATACA TCCAACTTCT CCACTATTGG TGCCGCGTTG TCCAAGTGAA ACATGCACTG 101314 |||||||||| |||| | ||||| |||| || | ||| ||| ||||| ||| ||||| TGCGCATACA TCCAGCCCTC CCACTCTTGG CTCCTCATTG TCCTAGTGAG ACAATCACTG 685 TCGGAGGATA CACTGTTCCT AAAGGATCTT GTATTTT 101351 | || ||||| |||||||||| ||||| ||| || |||| TTGGTGGATA CACTGTTCCT AAAGGGTCTC GTGTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (100055 100489,101065 101351) ******************************************************************************** EST sequence 178 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 99077 to 102867): Exon 1 100055 100489 ( 435 n); cDNA 1 435 ( 435 n); score: 0.887 Intron 1 100490 101064 ( 575 n); Pd: 0.997 (s: 0.92), Pa: 0.997 (s: 0.82) Exon 2 101065 101166 ( 102 n); cDNA 436 537 ( 102 n); score: 0.833 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.877 537 0.998 C PGS_C08HBa0060C12.1+_SGN-E206806+ (100055 100489,101065 101166) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TCAGTTACTT TTATAACAAG GCAGGATCCC CTGTGAATGT TGGTGAACAG 100114 |||| ||| | ||| |||||| |||| || || | | | |||||||| |||||||||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTATTCTTAA TGTGATTACA AGCATGTTAT GGGGTGGTAC AGTGAAGGGT 100174 |||||||||| || | ||||| |||||| ||| |||||||||| |||| || || |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAGCCTTGG AGCTGAGTTT AGGTATGTTG TGACTGAGAT AGCTTCATTG 100234 |||||||||| ||| ||||| |||||||||| ||| |||||| |||||||||| |||| ||| GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TGCAGTGTTC CCAATCTTTC CGATTTTTAC CCAGGCTTGG CCTGGTTTGA TTTCCAGGGT 100294 |||| ||| |||||||||| ||||||||| || ||||||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTGCAAAGA AGATGAAGGT GCTGGTAAAA AGATTTGATA AGATATTTGA GAGCATAATT 100354 ||| ||||| |||| ||||| | || |||| |||||||||| |||||||||| ||||| ||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 AATCAAAGAC AAAAATTGGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTCTTGCAA 100414 ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||| |||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTAA AGCTGAAAGA TGAAGCAGAT CCCAATATGC CTCTAACCAT GATTGAAATC 100474 |||||||| | || ||||||| |||||||||| |||| |||| |||| ||||| || ||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTATG TTATCAGTTG TGCATTCTAC GAAATTCGTT TTTTTTTTCA 100534 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 AATGAATCAA AAATAATTGT TATTCGCCAA GATTGATTTG TCATCAACCA TTCATACTAT 100594 .......... .......... .......... .......... .......... .......... 435 GCATTAATTA TTAGCTTACA CTGATCATGA TGGAATCTTT TATTTTTTTA TATTTAAAGG 100654 .......... .......... .......... .......... .......... .......... 435 ATCAATATCA TTGTGTCATA TGGTTGCGTT CTTCTTCTAG GAAACATGTG GTGTTGGTTA 100714 .......... .......... .......... .......... .......... .......... 435 TAAAGTTTGC ATTATACTTG AAATGATCCA TTTCCTTACC TGGTTGGCAG TTAACGGATG 100774 .......... .......... .......... .......... .......... .......... 435 AAAAATTGGC TTATAGTGAT ATCAGTCAAA ATATGAGGAT CAAATGCTAA TAAAAGATAA 100834 .......... .......... .......... .......... .......... .......... 435 AATTGGGATC ACAAATGTAT TGAAGAATTA TTGTGTAATA GATATTAGAT TCATATATTC 100894 .......... .......... .......... .......... .......... .......... 435 ATGTTCCGAA GAACTGTTAG TTGCTACCAT GTTAATGGAC TGCCTTAAGG AAAGAGTTGG 100954 .......... .......... .......... .......... .......... .......... 435 CAAATTTAGC ATCAGATAAT ATGTGAAGAC TTAACCGTGA ATTAAGACGG AACTGAACTT 101014 .......... .......... .......... .......... .......... .......... 435 CAATTAAAAA TTGTTGTACA TGATAATAAT TTCACAAATA CTATGGACAG GATATGATTC 101074 ||| || || .......... .......... .......... .......... .......... GATTTGGTTG 445 TTGGTGGAAC TGACAGTACC TCCAACACGA TTGAGTTTGC GATGGCTGAA ATTATGAACA 101134 | |||||||| ||||| || |||||| || |||||||||| ||||||||| ||| |||||| TCGGTGGAAC TGACACAACT TCCAACGCGG TTGAGTTTGC CATGGCTGAA ATTTTGAACA 505 AACCATACGT CCTGAGGAAA TTACAAGAAG AA 101166 ||||| | | |||||| ||| ||||| ||| || AACCAGATAT CCTGAGAAAA ATACAACAAG AA 537 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (100055 100489,101065 101166) ******************************************************************************** EST sequence 149 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 99414 to 104497): Exon 1 100086 100489 ( 404 n); cDNA 1 404 ( 404 n); score: 0.869 Intron 1 100490 101064 ( 575 n); Pd: 0.997 (s: 0.90), Pa: 0.997 (s: 0.82) Exon 2 101065 101132 ( 68 n); cDNA 405 472 ( 68 n); score: 0.838 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.864 472 1.000 C PGS_C08HBa0060C12.1+_SGN-E205363+ (100086 100489,101065 101132) Alignment (genomic DNA sequence = upper lines): CAGGATCCCC TGTGAATGTT GGTGAACAGA TGTTCTTGAC TATTCTTAAT GTGATTACAA 100145 ||||||| || |||||||||| |||||||||| |||| ||||| | |||||| |||||||||| CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 60 GCATGTTATG GGGTGGTACA GTGAAGGGTG AGGAAAGAGC TAGCCTTGGA GCTGAGTTTA 100205 |||||||||| |||||| ||| |||||||||| |||||||||| || ||||| || ||| ||| GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 120 GGTATGTTGT GACTGAGATA GCTTCATTGT GCAGTGTTCC CAATCTTTCC GATTTTTACC 100265 || ||||||| |||| |||| | ||| | ||| ||||||||| |||||||||| GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 180 CAGGCTTGGC CTGGTTTGAT TTCCAGGGTG TTGCAAAGAA GATGAAGGTG CTGGTAAAAA 100325 | || ||||| |||||||||| || ||||||| || |||||| |||||| ||| ||| ||| | CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 240 GATTTGATAA GATATTTGAG AGCATAATTA ATCAAAGACA AAAATTGGAC AGAAATGGTG 100385 ||| |||||| ||||||||| ||||| ||| |||||||||| |||| || | |||||||| | GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 300 TTGGCCAAGA AAGCAAAGAC TTCTTGCAAG TTTTGCTAAA GCTGAAAGAT GAAGCAGATC 100445 |||||||||| |||||| ||| || ||||||| ||||||| || | |||||||| |||||||||| TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 360 CCAATATGCC TCTAACCATG ATTGAAATCA AAGCCTTACT TATGGTATGT TATCAGTTGT 100505 |||| ||||| ||| |||||| | |||| ||| |||||||||| || | CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACG...... .......... 404 GCATTCTACG AAATTCGTTT TTTTTTTCAA ATGAATCAAA AATAATTGTT ATTCGCCAAG 100565 .......... .......... .......... .......... .......... .......... 404 ATTGATTTGT CATCAACCAT TCATACTATG CATTAATTAT TAGCTTACAC TGATCATGAT 100625 .......... .......... .......... .......... .......... .......... 404 GGAATCTTTT ATTTTTTTAT ATTTAAAGGA TCAATATCAT TGTGTCATAT GGTTGCGTTC 100685 .......... .......... .......... .......... .......... .......... 404 TTCTTCTAGG AAACATGTGG TGTTGGTTAT AAAGTTTGCA TTATACTTGA AATGATCCAT 100745 .......... .......... .......... .......... .......... .......... 404 TTCCTTACCT GGTTGGCAGT TAACGGATGA AAAATTGGCT TATAGTGATA TCAGTCAAAA 100805 .......... .......... .......... .......... .......... .......... 404 TATGAGGATC AAATGCTAAT AAAAGATAAA ATTGGGATCA CAAATGTATT GAAGAATTAT 100865 .......... .......... .......... .......... .......... .......... 404 TGTGTAATAG ATATTAGATT CATATATTCA TGTTCCGAAG AACTGTTAGT TGCTACCATG 100925 .......... .......... .......... .......... .......... .......... 404 TTAATGGACT GCCTTAAGGA AAGAGTTGGC AAATTTAGCA TCAGATAATA TGTGAAGACT 100985 .......... .......... .......... .......... .......... .......... 404 TAACCGTGAA TTAAGACGGA ACTGAACTTC AATTAAAAAT TGTTGTACAT GATAATAATT 101045 .......... .......... .......... .......... .......... .......... 404 TCACAAATAC TATGGACAGG ATATGATTCT TGGTGGAACT GACAGTACCT CCAACACGAT 101105 | ||||| || | |||||||||| || | || ||||||| | .......... .........G ATATGGTTGT TGGTGGAACT GAAACTAGTG CCAACACAGT 445 TGAGTTTGCG ATGGCTGAAA TTATGAA 101132 ||||||||| ||| |||||| ||||||| TGAGTTTGCC ATGACTGAAA TTATGAA 472 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (100086 100489,101065 101132) ******************************************************************************** EST sequence 93 +strand 260 n (File: SGN-E554086+) 1 ATCCCAGAAT GCCTATGACC CTGACTGAAT TCCAAGCCTT ACTTATGGAT ATGATTGTTG 61 GTGGAACTGA TAGTACCTCC GACGCGATTG AGTTTGCGAT GGCTGAAATT ATGATTAAAC 121 CGGACATCCT GAGGAAATTA CAAGAAGAAA TAGAAACAGT TGTGGGAAAG GATAATATTG 181 TGGAAGAGTC TCATATTAAG CAATTACCAT ATCTCTATGC AGTTTTTAAA GAAGTATTGT 241 CTTTACATCC ACCTGCTCCA Predicted gene structure (within gDNA segment 99662 to 102886): Exon 1 100443 100489 ( 47 n); cDNA 1 47 ( 47 n); score: 0.830 Intron 1 100490 101064 ( 575 n); Pd: 0.997 (s: 0.83), Pa: 0.997 (s: 0.92) Exon 2 101065 101277 ( 213 n); cDNA 48 260 ( 213 n); score: 0.878 MATCH C08HBa0060C12.1+ SGN-E554086+ 0.878 260 1.000 C PGS_C08HBa0060C12.1+_SGN-E554086+ (100443 100489,101065 101277) Alignment (genomic DNA sequence = upper lines): ATCCCAATAT GCCTCTAACC ATGATTGAAA TCAAAGCCTT ACTTATGGTA TGTTATCAGT 100502 |||||| || |||| | ||| ||| |||| || ||||||| ||||||| ATCCCAGAAT GCCTATGACC CTGACTGAAT TCCAAGCCTT ACTTATG... .......... 47 TGTGCATTCT ACGAAATTCG TTTTTTTTTT CAAATGAATC AAAAATAATT GTTATTCGCC 100562 .......... .......... .......... .......... .......... .......... 47 AAGATTGATT TGTCATCAAC CATTCATACT ATGCATTAAT TATTAGCTTA CACTGATCAT 100622 .......... .......... .......... .......... .......... .......... 47 GATGGAATCT TTTATTTTTT TATATTTAAA GGATCAATAT CATTGTGTCA TATGGTTGCG 100682 .......... .......... .......... .......... .......... .......... 47 TTCTTCTTCT AGGAAACATG TGGTGTTGGT TATAAAGTTT GCATTATACT TGAAATGATC 100742 .......... .......... .......... .......... .......... .......... 47 CATTTCCTTA CCTGGTTGGC AGTTAACGGA TGAAAAATTG GCTTATAGTG ATATCAGTCA 100802 .......... .......... .......... .......... .......... .......... 47 AAATATGAGG ATCAAATGCT AATAAAAGAT AAAATTGGGA TCACAAATGT ATTGAAGAAT 100862 .......... .......... .......... .......... .......... .......... 47 TATTGTGTAA TAGATATTAG ATTCATATAT TCATGTTCCG AAGAACTGTT AGTTGCTACC 100922 .......... .......... .......... .......... .......... .......... 47 ATGTTAATGG ACTGCCTTAA GGAAAGAGTT GGCAAATTTA GCATCAGATA ATATGTGAAG 100982 .......... .......... .......... .......... .......... .......... 47 ACTTAACCGT GAATTAAGAC GGAACTGAAC TTCAATTAAA AATTGTTGTA CATGATAATA 101042 .......... .......... .......... .......... .......... .......... 47 ATTTCACAAA TACTATGGAC AGGATATGAT TCTTGGTGGA ACTGACAGTA CCTCCAACAC 101102 |||||||| | |||||||| ||||| |||| ||||| || | .......... .......... ..GATATGAT TGTTGGTGGA ACTGATAGTA CCTCCGACGC 85 GATTGAGTTT GCGATGGCTG AAATTATGAA CAAACCATAC GTCCTGAGGA AATTACAAGA 101162 |||||||||| |||||||||| ||||||||| ||||| || ||||||||| |||||||||| GATTGAGTTT GCGATGGCTG AAATTATGAT TAAACCGGAC ATCCTGAGGA AATTACAAGA 145 AGAACTGGAG ACAGTTGTGG GAAAAGACAA TATTGTGGAT GAGTCTCATA TTAAGAAATT 101222 |||| | || |||||||||| |||| || || ||||||||| |||||||||| ||||| |||| AGAAATAGAA ACAGTTGTGG GAAAGGATAA TATTGTGGAA GAGTCTCATA TTAAGCAATT 205 ACCATATCTT TATGCAGTTA TGAAAGAAGT CTTGCGCATA CATCCAACTT CTCCA 101277 ||||||||| ||||||||| | |||||||| ||| || |||||| || ||||| ACCATATCTC TATGCAGTTT TTAAAGAAGT ATTGTCTTTA CATCCACCTG CTCCA 260 hqPGS_C08HBa0060C12.1+_SGN-E554086+ (100443 100489,101065 101277) ******************************************************************************** EST sequence 331 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 96631 to 104418): Exon 1 100446 100489 ( 44 n); cDNA 1 44 ( 44 n); score: 0.932 Intron 1 100490 101064 ( 575 n); Pd: 0.997 (s: 0.93), Pa: 0.997 (s: 0.82) Exon 2 101065 101696 ( 632 n); cDNA 45 676 ( 632 n); score: 0.866 MATCH C08HBa0060C12.1+ SGN-E378974- 0.866 676 0.929 C PGS_C08HBa0060C12.1+_SGN-E378974- (100446 100489,101065 101696) Alignment (genomic DNA sequence = upper lines): CCAATATGCC TCTAACCATG ATTGAAATCA AAGCCTTACT TATGGTATGT TATCAGTTGT 100505 |||| ||||| ||| |||||| | |||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 GCATTCTACG AAATTCGTTT TTTTTTTCAA ATGAATCAAA AATAATTGTT ATTCGCCAAG 100565 .......... .......... .......... .......... .......... .......... 44 ATTGATTTGT CATCAACCAT TCATACTATG CATTAATTAT TAGCTTACAC TGATCATGAT 100625 .......... .......... .......... .......... .......... .......... 44 GGAATCTTTT ATTTTTTTAT ATTTAAAGGA TCAATATCAT TGTGTCATAT GGTTGCGTTC 100685 .......... .......... .......... .......... .......... .......... 44 TTCTTCTAGG AAACATGTGG TGTTGGTTAT AAAGTTTGCA TTATACTTGA AATGATCCAT 100745 .......... .......... .......... .......... .......... .......... 44 TTCCTTACCT GGTTGGCAGT TAACGGATGA AAAATTGGCT TATAGTGATA TCAGTCAAAA 100805 .......... .......... .......... .......... .......... .......... 44 TATGAGGATC AAATGCTAAT AAAAGATAAA ATTGGGATCA CAAATGTATT GAAGAATTAT 100865 .......... .......... .......... .......... .......... .......... 44 TGTGTAATAG ATATTAGATT CATATATTCA TGTTCCGAAG AACTGTTAGT TGCTACCATG 100925 .......... .......... .......... .......... .......... .......... 44 TTAATGGACT GCCTTAAGGA AAGAGTTGGC AAATTTAGCA TCAGATAATA TGTGAAGACT 100985 .......... .......... .......... .......... .......... .......... 44 TAACCGTGAA TTAAGACGGA ACTGAACTTC AATTAAAAAT TGTTGTACAT GATAATAATT 101045 .......... .......... .......... .......... .......... .......... 44 TCACAAATAC TATGGACAGG ATATGATTCT TGGTGGAACT GACAGTACCT CCAACACGAT 101105 | || || || | ||||||||| |||| || | ||||| || | .......... .........G ATTTGGTTGT CGGTGGAACT GACACAACTT CCAACGCGGT 85 TGAGTTTGCG ATGGCTGAAA TTATGAACAA ACCATACGTC CTGAGGAAAT TACAAGAAGA 101165 ||||||||| |||||||||| || ||||||| |||| | || ||||| ||| ||||| |||| TGAGTTTGCC ATGGCTGAAA TTTTGAACAA ACCAGATATC CTGAGAAAAA TACAACAAGA 145 ACTGGAGACA GTTGTGGGAA AAGACAATAT TGTGGATGAG TCTCATATTA AGAAATTACC 101225 | | || ||| |||||||||| |||| || || ||||| ||| ||||||||| | | ||||| AGTAGATACA GTTGTGGGAA AAGATAACAT AGTGGAAGAG TCTCATATTC AACAGTTACC 205 ATATCTTTAT GCAGTTATGA AAGAAGTCTT GCGCATACAT CCAACTTCTC CACTATTGGT 101285 |||||| ||| ||||| |||| |||||| | | |||||||||| ||| | | |||| |||| ATATCTCTAT GCAGTGATGA AAGAAGCCAT GCGCATACAT CCAGCCCTCC CACTCTTGGC 265 GCCGCGTTGT CCAAGTGAAA CATGCACTGT CGGAGGATAC ACTGTTCCTA AAGGATCTTG 101345 || | |||| || ||||| | || |||||| || |||||| |||||||||| |||| ||| | TCCTCATTGT CCTAGTGAGA CAATCACTGT TGGTGGATAC ACTGTTCCTA AAGGGTCTCG 325 TATTTTCATT GATGTATGGG CTATACATAG AGATCCTTCT ATATGGGAAA ATCCAACAGA 101405 | |||| | ||||||||| ||||||| || |||||||||| || ||| ||| |||||||||| TGTTTTTGTA AATGTATGGG CTATACACAG AGATCCTTCT ATGTGGAAAA ATCCAACAGA 385 GTTCCTTCCA AAGAGATTTT TGGACAATAA ATGGGATTAT AGTGGAAATG ATTTCAACTA 101465 |||| |||| ||||||||| |||| ||||| |||| ||||| |||||||||| |||||||||| GTTCTGTCCA GAGAGATTTT TGGATAATAA ATGGAATTAT AGTGGAAATG ATTTCAACTA 445 TTTCCCATTT GGTTCTGGCA GAAGAATCTG TGCGGGGATA GCCATGGCAG AGAAGATGGT 101525 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||| |||| | TTTCCCATTT GGTTCTGGCA GAAGAATGTG TGCGGGGATA GCCATGGCAG AGAGGATGTT 505 CATGTATTCA CTTGCTTCAC TCATTCATTC TTTCGACTGG AAATTGCCTG AAGGAGAGAC 101585 |||||||||| || ||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CATGTATTCA CTGGCTTCAC TCATTCATTC TTTCGATTGG AAATTGCCTG AAGGAGAGAC 565 AGTAGAAGTG ACAGAGAATT TCGGTATTGT TATGAACAAG AAAATGCCTT TGGTGGCTAT 101645 |||| | | |||||| | | |||||| | |||| ||| ||||||||| |||||||||| GTTAGACCTT AAAGAGAAGT TTTGTATTGC TTTGAAGAAG AAAATGCCTC TGGTGGCTAT 625 ACCTACTCCA AGATTGTCTA ATCCAAAACT GTATGAGTAA CATAAAAATG T 101696 |||||||||| |||||||| | |||||| || |||||||||| ||||||||| | ACCTACTCCA AGATTGTCCA ATCCAACACA GTATGAGTAA GATAAAAATG T 676 hqPGS_C08HBa0060C12.1+_SGN-E378974- (100446 100489,101065 101696) ******************************************************************************** EST sequence 82 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 98945 to 101517): Exon 1 99545 100357 ( 813 n); cDNA 1 813 ( 813 n); score: 0.903 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.903 813 0.999 C PGS_C08HBa0060C12.1+_SGN-E553649+ (99545 100357) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCTCCT TCAACAACTC 99604 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATGTGGAGC AAAATGGTGT GTTTTTCTTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 99664 ||||| |||| || | | | | ||||||| || |||||||||| |||||||||| |||||||||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TTTTTCATCA GTAACTCGAA CAAGGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 99724 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GGCAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCAAAACT 99784 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||| | GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 240 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT AAAAAACTTG GGATTATAAT TACTTCACCA 99844 |||||||||| |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 300 GAATTAGCTC GCGAGGTTCT AAAGGATAAA GATATCATTT TTTCAAACAG AGATGTCCCT 99904 |||||||||| |||| ||||| |||||||||| ||||| |||| || | ||||| ||| || ||| GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 360 GATGCTGGAA GAGAATTTTC ATATGGTGGT AATAGCATAC TTTGGACACC TTATGGACCG 99964 | ||||| | |||| |||| ||||||| | ||| ||||| |||||| | ||||||||| GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 420 AAATGGCGCA TGTTGAGGAA GGTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 100024 ||||||| | || |||| || | |||||||| |||||||||| |||||||||| |||||||||| CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 480 TCGGTTTATG CACTAAGGCA AAGGGAGCTT AGACAATCGA TCAGTTACTT TTATAACAAG 100084 || |||| || ||||||||| |||||||||| |||||||||| | | |||||| |||| ||| TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 540 GCAGGATCCC CTGTGAATGT TGGTGAACAG ATGTTCTTGA CTATTCTTAA TGTGATTACA 100144 || | | | ||||| || |||||| ||| |||||||||| || | |||| |||||||||| AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 600 AGCATGTTAT GGGGTGGTAC AGTGAAGGGT GAGGAAAGAG CTAGCCTTGG AGCTGAGTTT 100204 |||||||||| ||||| | || |||||||||| |||||||||| ||| ||||| || |||||| AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 660 AGGTATGTTG TGACTGAGAT AGCTTCATTG TGCAGTGTTC CCAATCTTTC CGATTTTTAC 100264 |||||||||| ||| |||||| ||| | || |||||| ||| |||||||||| |||||| ||| AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 720 CCAGGCTTGG CCTGGTTTGA TTTCCAGGGT GTTGCAAAGA AGATGAAGGT GCTGGTAAAA 100324 ||||| |||| |||||||||| |||||||||| ||| |||||| |||||||| | |||| |||| CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 780 AGATTTGATA AGATATTTGA GAGCATAATT AAT 100357 |||||||| | |||||||||| ||||| ||| || AGATTTGAGA AGATATTTGA TAGCATGATT GAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (99545 100357) ******************************************************************************** EST sequence 97 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 98780 to 106926): Exon 1 99551 100322 ( 772 n); cDNA 1 770 ( 770 n); score: 0.850 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.850 772 1.000 C PGS_C08HBa0060C12.1+_SGN-E554337+ (99551 100322) Alignment (genomic DNA sequence = upper lines): CTCAAATTCT -TCAAAC-C- CCTTTTTGAT TCTTTCCCAT GGCTCC-TTC AACAACTCAA 99606 |||| ||||| |||||| | ||||||||| |||||||||| |||||| ||| |||| ||||| CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 60 TGTGGAGCA- AAATGGTGTG TTTTTCTTCT GTTTTCTTGG TTTTTTAGCT TTACTTTGGT 99665 || ||| | ||| ||| |||||| || ||||| |||| |||||||||| |||||||||| TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 120 TTTTCATCAG TAACTCGAAC AAGGGTCTGC CACCAGGGCC TAAAGCTTTG CCCTTGATAG 99725 ||||||||| |||||| ||| ||||| ||| |||||||||| |||| ||||| |||||||||| GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 180 GCAATCTCCA TTCTCTTGAT CCTGAACTTC ACACCTATTT TGCATCTCTG TCCAAAACTT 99785 | |||||| | ||||||||| | | | ||||||||| ||||||||| ||| |||||| GTAATCTCTA TTCTCTTGA- --T---C--C -CACCTATTT TGCATCTCTT TCCCAAACTT 231 ATGGCCCCAT TTGTAGAATC TGGCTTGGTA AAAAACTTGG GATTATAATT ACTTCACCAG 99845 |||||||||| ||||||| || |||||||||| ||||| |||| |||||| ||| |||||||| ATGGCCCCAT TTGTAGACTC TGGCTTGGTA AAAAAGTTGG GATTATTATT ACTTCACCTA 291 AATTAGCTCG CGAGGTTCTA AAGGATAAAG ATATCATTTT TTCAAACAGA GATGTCCCTG 99905 |||||||| |||||||| |||||||||| | | |||||| | | |||||| |||||||| | CCTTAGCTCG TGAGGTTCTT AAGGATAAAG ACACCATTTT TGCTAACAGA GATGTCCCAG 351 ATGCTGGAAG AGAATTTTCA TATGGTGGTA ATAGCATACT TTGGACACCT TATGGACCGA 99965 ||||| || |||||| ||| |||||||| | |||||||||| |||||| ||| |||||||||| CTGCTGCAAA AGAATTATCA TATGGTGGCA ATAGCATACT TTGGACTCCT TATGGACCGA 411 AATGGCGCAT GTTGAGGAAG GTTTGTGTTC GCGATATGCT TAGTTGTTCT ACTTTAGATT 100025 ||||| | || |||||||||| ||||| |||| || ||||||| ||||| |||| |||||||||| AATGGAGAAT GTTGAGGAAG GTTTGCGTTC GCAATATGCT TAGTTATTCT ACTTTAGATT 471 CGGTTTATGC ACTAAGGCAA AGGGAGCTTA GACAATCGAT CAGTTACTTT TATAACAAGG 100085 | |||||||| ||||||| || |||||||||| |||||||||| || |||||| || | || CTGTTTATGC ACTAAGGAAA AGGGAGCTTA GACAATCGAT CAATTACTTC TACAGTCAGA 531 CAGGATCCCC TGTGAATGTT GGTGAACAGA TGTTCTTGAC TATTCTTAAT GTGATTACAA 100145 || | || || |||||| ||||| |||| ||||||||| | |||||| |||||||||| AGGGTTTACC AGTAAATGTT GGTGAGCAGA TGTTCTTGAG TTCACTTAAT GTGATTACAA 591 GCATGTTATG GGGTGGTACA GTGAAGGGTG AGGAAAGAGC TAGCCTTGGA GCTGAGTTTA 100205 |||||||||| |||||| ||| |||||||||| |||||||||| || |||||| |||||||||| GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGA GCTGAGTTTA 651 GGTATGTTGT GACTGAGATA GCTTCATTGT GCAGTGTTCC CAATCTTTCC GATTTTTACC 100265 || || |||| ||||| || ||| | || |||| |||| |||| |||| |||||||||| GGCATATTGT CACTGAAATG GCTGCGCTGG TCAGTATTCC CAATTATTCC GATTTTTACC 711 C-AGGCTTGG CCTGGTTTGA TTTCCAGGGT GTTGCAAAGA AGATG-AAGG TGCTGGTAA 100322 | ||||||| |||||||||| |||||| ||| |||||||| | ||||| |||| || ||| || CGGGGCTTGG CCTGGTTTGA TTTCCAAGGT GTTGCAAAAA AGATGAAAGG TGTTGGCAA 770 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (99551 100322) ******************************************************************************** EST sequence 125 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 98968 to 100897): Exon 1 99712 100197 ( 486 n); cDNA 1 486 ( 486 n); score: 0.883 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.883 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (99712 100197) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGCAATC TCCATTCTCT TGATCCTGAA CTTCACACCT ATTTTGCATC 99771 |||||||||| ||||| |||| |||||||||| ||| ||| || |||||||||| |||| ||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTGTCCAAA ACTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 99831 ||| |||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 AATTACTTCA CCAGAATTAG CTCGCGAGGT TCTAAAGGAT AAAGATATCA TTTTTTCAAA 99891 ||||||| || | |||| |||||||||| ||| |||||| ||||||| || ||||| | || TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGATGTC CCTGATGCTG GAAGAGAATT TTCATATGGT GGTAATAGCA TACTTTGGAC 99951 ||||||||| || ||||| | |||||| | | |||||||| || | | || || ||||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 ACCTTATGGA CCGAAATGGC GCATGTTGAG GAAGGTTTGT GTTCGCGATA TGCTTAGTTG 100011 ||||||||| || || |||| | |||||||| |||||||||| |||| || | |||||| | TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACTTTA GATTCGGTTT ATGCACTAAG GCAAAGGGAG CTTAGACAAT CGATCAGTTA 100071 |||||||||| ||| | ||| ||||||| || || ||||||| |||||||||| |||| | ||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTTTATAAC AAGGCAGGAT CCCCTGTGAA TGTTGGTGAA CAGATGTTCT TGACTATTCT 100131 ||||||||| || |||||| | |||||||| |||||||||| |||||||| | ||||| || CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATT ACAAGCATGT TATGGGGTGG TACAGTGAAG GGTGAGGAAA GAGCTAGCCT 100191 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||| || TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGAGC 100197 ||| || TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (99712 100197) ******************************************************************************** EST sequence 50 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 99642 to 107242): Exon 1 101187 101729 ( 543 n); cDNA 1 543 ( 543 n); score: 0.880 Intron 1 101730 101858 ( 129 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.70) Exon 2 101859 101919 ( 61 n); cDNA 544 598 ( 55 n); score: 0.639 Intron 2 101920 102017 ( 98 n); Pd: 0.900 (s: 0.64), Pa: 0.000 (s: 0.46) Exon 3 102018 102079 ( 62 n); cDNA 599 660 ( 62 n); score: 0.532 Intron 3 102080 102417 ( 338 n); Pd: 0.000 (s: 0.54), Pa: 0.000 (s: 0.48) Exon 4 102418 102465 ( 48 n); cDNA 661 708 ( 48 n); score: 0.479 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.826 714 1.003 C PGS_C08HBa0060C12.1+_SGN-E551573+ (101187 101729,101859 101919,102018 102079,102418 102465) Alignment (genomic DNA sequence = upper lines): AGACAATATT GTGGATGAGT CTCATATTAA GAAATTACCA TATCTTTATG CAGTTATGAA 101246 ||| |||||| || || |||| |||||||| | | |||||||| ||||| |||| |||| ||||| AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 60 AGAAGTCTTG CGCATACATC CAACTTCTCC ACTATTGGTG CCGCGTTGTC CAAGTGAAAC 101306 |||||| ||| ||||| |||| || || |||| ||||||||| || | ||||| |||||||||| AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 120 ATGCACTGTC GGAGGATACA CTGTTCCTAA AGGATCTTGT ATTTTCATTG ATGTATGGGC 101366 ||||||||| |||||||||| |||||||||| ||||||| || ||||||| |||||||||| ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 180 TATACATAGA GATCCTTCTA TATGGGAAAA TCCAACAGAG TTCCTTCCAA AGAGATTTTT 101426 |||||| ||| |||||||||| | ||| ||| |||||||||| |||| |||| |||||||||| TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 240 GGACAATAAA TGGGATTATA GTGGAAATGA TTTCAACTAT TTCCCATTTG GTTCTGGCAG 101486 |||||||||| ||||||| || |||||||||| |||||||||| || ||||||| |||||||||| GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 300 AAGAATCTGT GCGGGGATAG CCATGGCAGA GAAGATGGTC ATGTATTCAC TTGCTTCACT 101546 |||||||||| | |||||||| ||||||||| || |||| || |||||| ||| | ||||| || AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 360 CATTCATTCT TTCGACTGGA AATTGCCTGA AGGAGAGACA GTAGAAGTGA CAGAGAATTT 101606 |||||||||| || || |||| |||||||||| |||||||||| ||| | | |||||| || CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 420 CGGTATTGTT ATGAACAAGA AAATGCCTTT GGTGGCTATA CCTACTCCAA GATTGTCTAA 101666 | |||| | ||| |||| |||| ||| | |||| ||||| |||||||||| ||||||| || TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 480 TCCAAAACTG TATGAGTAAC ATAAAAATGT GCTTGTAGAG AATCGTGTTC TGTATGATGA 101726 ||||| ||| ||||||||| ||||| || | ||| ||| | |||| ||| |||||||||| TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 540 TTCCCGTCTT TTTTTTTTAG AAAATAATGA TTCTGTCTTT TGTATGATGA ATTATGGAAA 101786 ||| TTC....... .......... .......... .......... .......... .......... 543 TAAACATCAA ATACTCCTAT ATCTTAGCAT GTTCAGTAGA TTCCAATAGT TCTAAACTTG 101846 .......... .......... .......... .......... .......... .......... 543 AAATCTAATA ACTCTAAATA TTTGCGTAAT GATAGTTCAA TTTCTTTTCA TATGTAGGAG 101906 | | | || | | || ||| | || || ||||||| | |||||| || .......... ..TGT-ATTA TCT-CG-AAT -CT-GTGCAT TTTCTTTAC- TATGTAAGAA 585 ATATCAAGAA TTAATATCTT TAGGCGTGTA AATAGAAGAT TTTTAGACAT GTAAATTCGG 101966 || ||| | ATGTCACTTT CTT....... .......... .......... .......... .......... 598 AATTCTGTCT CCACTTGAAA CATTCATTCA GCAAACCTGC TAAAGCAACA GCCTACTGCT 102026 | || | .......... .......... .......... .......... .......... .CTCTCTCTT 607 TTTCTTCGAG TCATTCACTA GTGATTCCTT TAAAAAGAAA AAATAAATAA AAAATTTGGT 102086 ||| | | | || || | ||| | ||| ||| ||| || ||| GTTCAATGTT TAAACCAACT TTGGTCNNNA NAAANAAAAA AAAAAAAAAA AAA....... 660 TTTGCTAGAA ATTCGTCAAC AGTTAGTCTT AAATATTTTG GGCTCTTGGT CTTGATTAAA 102146 .......... .......... .......... .......... .......... .......... 660 TATCGATTTC CATTGAATCA ACATTGTAAC AGTATGAGTG GGGACTGGAA AGATATCTCT 102206 .......... .......... .......... .......... .......... .......... 660 GCTTCATTTT CATTGTATGC ATCCGCCAAA TTAGTTTTTT TCTTCATCAG AAATATCTCA 102266 .......... .......... .......... .......... .......... .......... 660 TTCCTTCGGA TAATTAGTCT TATGTTAATT ATTGTCCCTA GTTTCTTCGA AATAGGGGTA 102326 .......... .......... .......... .......... .......... .......... 660 TAGATCACTT TTGATCTAAG TTCTTGAATT GACTCTATTA TGATTATAAT TAGTGTTAGT 102386 .......... .......... .......... .......... .......... .......... 660 GAAAAAACTT ACAAGATCAT AAAATTGCAA GATTACAATT GAAAATAAAA TGACAAAATT 102446 | | || |||| |||| | |||| .......... .......... .......... .AAAAAAAAA AAAAAAAAAA AAAAAAAANN 689 AATCTCTTCA GGCTGAGGG 102465 || | ||| NNNNNNNNGG GGGGGGGGG 708 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (101187 101729) ******************************************************************************** EST sequence 295 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 100771 to 103746): Exon 1 101381 101635 ( 255 n); cDNA 1 255 ( 255 n); score: 0.914 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.914 255 0.704 C PGS_C08HBa0060C12.1+_SGN-E234103- (101381 101635) Alignment (genomic DNA sequence = upper lines): CTTCTATATG GGAAAATCCA ACAGAGTTCC TTCCAAAGAG ATTTTTGGAC AATAAATGGG 101440 |||||||||| |||||||||| || ||||||| |||| |||| |||||||||| ||||| |||| CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 101500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGCCAT GGCAGAGAAG ATGGTCATGT ATTCACTTGC TTCACTCATT CATTCTTTCG 101560 |||||| ||| |||| ||| | ||| |||||| ||||||| || ||||||| | |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCTGAAGGA GAGACAGTAG AAGTGACAGA GAATTTCGGT ATTGTTATGA 101620 |||||||||| |||||||||| |||||| ||| | | ||||| ||| || || |||||| ||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 ACAAGAAAAT GCCTT 101635 | ||||| || | ||| AGAAGAAGAT GTCTT 255 hqPGS_C08HBa0060C12.1+_SGN-E234103- (101381 101635) ******************************************************************************** EST sequence 306 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 100774 to 103746): Exon 1 101384 101635 ( 252 n); cDNA 1 253 ( 253 n); score: 0.899 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.899 252 0.700 C PGS_C08HBa0060C12.1+_SGN-E234174- (101384 101635) Alignment (genomic DNA sequence = upper lines): CTATATGGGA AAATCCAACA GA-GTTCCTT CCAAAGAGAT TTTTGGACAA TAAATGGGAT 101442 |||||||||| |||||| || || ||||| | ||| |||||| |||||||||| ||| |||||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 101502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGCCATGG CAGAGAAGAT GGTCATGTAT TCACTTGCTT CACTCATTCA TTCTTTCGAC 101562 |||| ||||| |||||| ||| | |||||||| ||||| |||| ||||| | || |||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CTGAAGGAGA GACAGTAGAA GTGACAGAGA ATTTCGGTAT TGTTATGAAC 101622 |||||||||| |||||||||| |||| ||| | ||||||| | || || || |||| |||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATGC CTT 101635 ||||| ||| ||| AAGAAGATGT CTT 253 hqPGS_C08HBa0060C12.1+_SGN-E234174- (101384 101635) ******************************************************************************** EST sequence 134 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 100849 to 103583): Exon 1 101449 101713 ( 265 n); cDNA 1 264 ( 264 n); score: 0.853 MATCH C08HBa0060C12.1+ SGN-E243190+ 0.853 265 1.000 C PGS_C08HBa0060C12.1+_SGN-E243190+ (101449 101713) Alignment (genomic DNA sequence = upper lines): GGAAATGATT TCAACTATTT CCCATTTGGT TCTGGCAGAA GAATCTGTGC GGGGATAGCC 101508 |||||||||| |||||||| | |||||||||| ||||| |||| || | || || |||||||| | GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA AGATGGTCAT GTATTCACTT GCTTCACTCA TTCATTCTTT CGACTGGAAA 101568 |||||||||| |||| |||| |||||||||| ||||| |||| |||||||||| |||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCTGAAG GAGAGACAGT AGAAGTGACA GAGAATTTCG GTATTGTTAT GAACAAGAAA 101628 ||||| |||| ||||||| | ||| | ||| ||||| || | | |||||| | ||| |||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATGCCTTTGG TGGCTATACC TACTCCAAGA TTGTCTAATC CAAAACTGTA TGAGTAACAT 101688 |||||| ||| |||||||||| |||||||||| |||||| ||| ||| ||| || ||||||| || ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 240 AAAAATGTGC TTGTAGAGAA TCGTG 101713 | | ||| || | ||| -GTATTAGAA ATGTTTGGAT TAGTG 264 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (101449 101713) ******************************************************************************** EST sequence 407 +strand 481 n (File: SGN-E313355+) 1 GAAAAATTAG TCAAAAAGAG AGTTTTTATT AGTTGAAGGG AGGTGTTTTT TTATGGAGCT 61 TTGGACTCAA CCCTTTTGCG GAGTTGTTGA GTTATACTTT GTGAAGTTTG TTGAATCCTG 121 GATGGGAAAG TCAAAGAGAA CTATTGCTGG ACCGGTGAAA ACAGTTGTTC CACTAGGCTT 181 GAATCTCCTT ATAGAGAGCG AGATATTCAC GCCTCTGCCT GAACAGATTT TTTTTCTTCA 241 TTTCATTTTA AGATGGATTC TTGTAATTTT TTGTTATCTT ATAAGTTTTC ACTAAAAAAT 301 TCAAGGAGAT TCATTATAGG TACAATTGAA AAAATCACGG ATGTCTAGAT GTGAGACGTC 361 AACAAGCCAT TTTGGTTCAA TAGTAACAAT TTTAAGAGGT GAAAGAGTAA AGTACTTTTC 421 TACTTAAGTT TTCTCAATGT TTCTTATGTG TTAACTGAGA AGCCCAATAA TGAAGAAATC 481 A Predicted gene structure (within gDNA segment 103752 to 98974): Exon 1 102650 102347 ( 304 n); cDNA 28 333 ( 306 n); score: 0.775 MATCH C08HBa0060C12.1- SGN-E313355+ 0.775 304 0.632 C PGS_C08HBa0060C12.1-_SGN-E313355+ (102650 102347) Alignment (genomic DNA sequence = upper lines): ATTAGTTGAA GGGAAGTGTT TTTTTTTGTG GAGCTTTGGA CTCAATTCTT GTCCAGAGTT 102591 |||||||||| |||| ||||| ||||| || |||||||||| ||||| ||| | | ||||| ATTAGTTGAA GGGAGGTGTT TTTTTATG-- GAGCTTTGGA CTCAACCCTT TTGCGGAGTT 85 GTTGAGTTAT ACTTTGTGAA GGCTGTTGTA TCCTGGAGGG GACAAGTCAA AGAGGACTAC 102531 |||||||||| |||||||||| | ||||| | ||||||| || || ||||||| |||| |||| GTTGAGTTAT ACTTTGTGAA GTTTGTTGAA TCCTGGATGG GA-AAGTCAA AGAGAACTAT 144 TGCTGGACCG GTGAAAACAT TTGCTGCAGT GGGCTTGAAT CTCCTTAAAG AGAGCGAGAT 102471 |||||||||| ||||||||| ||| | || | ||||||||| ||||||| || |||||||||| TGCTGGACCG GTGAAAACAG TTGTTCCACT AGGCTTGAAT CTCCTTATAG AGAGCGAGAT 204 A-TCTGCCCT CAGCCTGAAG AGATTAATTT T-GTCATTTT ATTTTCAATT GTAATCTTGC 102413 | || ||| | ||||||| ||||| ||| | |||||| ||||| | | | | ||||| ATTCACGCCT CTGCCTGAAC AGATTTTTTT TCTTCATTTC ATTTTAAGAT GGATTCTTGT 264 AATTTTATG- -ATCTTGTAA GTTTTTTCAC TAACACT-AA TTATAATCAT AATAGAGTCA 102356 |||||| || ||||| ||| ||||| | || | | || | | |||| |||| || AATTTTTTGT TATCTTATAA GTTTTCACTA AAAAATTCAA GGAGATTCAT TATAGGTACA 324 ATTCAAGAA 102347 ||| || || ATTGAAAAA 333 hqPGS_C08HBa0060C12.1-_SGN-E313355+ (102650 102347) ******************************************************************************** EST sequence 408 +strand 507 n (File: SGN-E313356+) 1 GAAAAATTAG TCAAAAAGAG AGTTTTTATT AGTTGAAGGG AGGTGTTTTT TTATGGAGCT 61 TTGGACTCAA CCCTTTTGCG GAGTTGTTGA GTTATACTTT GTGAAGTTTG TTGAATCCTG 121 GATGGGAAAG TCAAAGAGAA CTATTGCTGG ACCGGTGAAA ACAGTTGTTC CACTAGGCTT 181 GAATCTCCTT ATAGAGAGCG AGATATTCAC GCCTCTGCCT GAACAGATTT TTTTTCTTCA 241 TTTCATTTTA AGATGGATTC TTGTAATTTT TTGTTATCTT ATAAGTTTTC ACTAAAAAAT 301 TCAAGGAGAT TCATTATAGG TACAATTGAA AAAATCACGG ATGTCTAGAT GTGAGACGTC 361 AACAAGCCAT TTTGGTTCAA TAGTAACAAT TTTAAGAGGT GAAAGAGTAA AGTACTTTTC 421 TACTTAAGTT TTCTCAATGT TTCTTATGTG TTAACTGAGA AGCCCAATAA TGAAGAAATC 481 ACCTCTATGA GTGATGGTGA AACTGTC Predicted gene structure (within gDNA segment 103752 to 98714): Exon 1 102650 102347 ( 304 n); cDNA 28 333 ( 306 n); score: 0.775 MATCH C08HBa0060C12.1- SGN-E313356+ 0.775 304 0.600 C PGS_C08HBa0060C12.1-_SGN-E313356+ (102650 102347) Alignment (genomic DNA sequence = upper lines): ATTAGTTGAA GGGAAGTGTT TTTTTTTGTG GAGCTTTGGA CTCAATTCTT GTCCAGAGTT 102591 |||||||||| |||| ||||| ||||| || |||||||||| ||||| ||| | | ||||| ATTAGTTGAA GGGAGGTGTT TTTTTATG-- GAGCTTTGGA CTCAACCCTT TTGCGGAGTT 85 GTTGAGTTAT ACTTTGTGAA GGCTGTTGTA TCCTGGAGGG GACAAGTCAA AGAGGACTAC 102531 |||||||||| |||||||||| | ||||| | ||||||| || || ||||||| |||| |||| GTTGAGTTAT ACTTTGTGAA GTTTGTTGAA TCCTGGATGG GA-AAGTCAA AGAGAACTAT 144 TGCTGGACCG GTGAAAACAT TTGCTGCAGT GGGCTTGAAT CTCCTTAAAG AGAGCGAGAT 102471 |||||||||| ||||||||| ||| | || | ||||||||| ||||||| || |||||||||| TGCTGGACCG GTGAAAACAG TTGTTCCACT AGGCTTGAAT CTCCTTATAG AGAGCGAGAT 204 A-TCTGCCCT CAGCCTGAAG AGATTAATTT T-GTCATTTT ATTTTCAATT GTAATCTTGC 102413 | || ||| | ||||||| ||||| ||| | |||||| ||||| | | | | ||||| ATTCACGCCT CTGCCTGAAC AGATTTTTTT TCTTCATTTC ATTTTAAGAT GGATTCTTGT 264 AATTTTATG- -ATCTTGTAA GTTTTTTCAC TAACACT-AA TTATAATCAT AATAGAGTCA 102356 |||||| || ||||| ||| ||||| | || | | || | | |||| |||| || AATTTTTTGT TATCTTATAA GTTTTCACTA AAAAATTCAA GGAGATTCAT TATAGGTACA 324 ATTCAAGAA 102347 ||| || || ATTGAAAAA 333 hqPGS_C08HBa0060C12.1-_SGN-E313356+ (102650 102347) ******************************************************************************** EST sequence 33 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 100504 to 107898): Exon 1 103993 104427 ( 435 n); cDNA 1 435 ( 435 n); score: 0.901 Intron 1 104428 105114 ( 687 n); Pd: 0.998 (s: 0.96), Pa: 0.999 (s: 0.84) Exon 2 105115 105401 ( 287 n); cDNA 436 722 ( 287 n); score: 0.819 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.868 722 1.000 C PGS_C08HBa0060C12.1+_SGN-E378935+ (103993 104427,105115 105401) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TGAATTACTT CTATAGTAAG AAGGGTTTAC CAGTGAACGT TGGTGAGCAG 104052 |||| ||| | | |||||||| |||||| || | |||||||| ||||||| || |||||| ||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGTTTAA TGTGATTACA AGCATGTTAT GGGGTAGCAC AGTGAAGGGT 104112 |||||||||| ||||| |||| |||||| ||| |||||||||| |||| |||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAATCTTGG GGCAGAGTTT AGGTATGTTG TGAGTGAGAT GGCTGCGCTG 104172 |||||||||| ||| |||||| || |||||| ||| |||||| ||| |||||| |||| | || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TGCAGTATTC CCAATCTTTC CGATTTCTAC CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT 104232 |||||||| |||||||||| ||||| ||| || || |||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTACAAAGA AGATGAAGCT GCTGTTAAAG AGATTTGAGA AGATATTTGA TAGCATGATT 104292 |||| ||||| |||| ||| | | || ||||| |||||||| | |||||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATGAAAGAA AAAAATTGGA TAGAAATGGT GTTGGCCAAG AAATCAAAGA CTTTTTGCAA 104352 ||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||| |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT CCCAAAATGC CTATGACCAT GACTGAAATC 104412 |||||||| | |||||||||| |||||||||| ||||||||| || ||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTAAG TTTATCAGTT GTGCATTTTA CGAAAACTTG TTTTTTTCCA 104472 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 AAAAGAAACC ATCCTGATGC AACCAAAGAT GCCTTATCTA TATGGATTAG TATTAGCTTA 104532 .......... .......... .......... .......... .......... .......... 435 CCCTGATCAT GATGACAGAA ACATCTTTTC TTTTTTATAT AAAATTTCAG AAGAATCAGC 104592 .......... .......... .......... .......... .......... .......... 435 TTTGTAAACT CATGTCCTGA GCTGTTGGTT GCGTTCTTCT GCTAGGAAAA TTCACTTTCA 104652 .......... .......... .......... .......... .......... .......... 435 TTAAGGGTGT GTTTGGTATG AAGGAAAACA TTTTCCGAAA ATTCTTTTCC TATTATCTCA 104712 .......... .......... .......... .......... .......... .......... 435 TGAATAAGTT TTGAAAATAT TTTCCGAACA ATCTTTTCCA AACATTTTCC TTCTTACCAA 104772 .......... .......... .......... .......... .......... .......... 435 ACATACCCTA AAAAGTTTGC TTTTTATTTT AAATAGTCAT CTGCTTACCT GTTAGGTAGT 104832 .......... .......... .......... .......... .......... .......... 435 TAACAGATGA AAAATTGGTT TATAGTGTTA TTTGTCATAA TAAGAGGATC AAATGCTAAT 104892 .......... .......... .......... .......... .......... .......... 435 ACAAGTTAAA ATTAGGATCA TAAATGTATT GAAGAATTAT TGTGGCATGC TACCATGTTA 104952 .......... .......... .......... .......... .......... .......... 435 TTGGACTGCC TTTATAGAAG AGTCCGCAAA TTTAGCATCT AAAAATATGT GAAGACTTAA 105012 .......... .......... .......... .......... .......... .......... 435 CTGTAAATTA AGACGGTGAA TCTTGAACTG AACTCCAATA TACAGTTCTA CAATTACAAA 105072 .......... .......... .......... .......... .......... .......... 435 AATTGTTGTA CATGATAATA ACTTCACAAA TACTATGTAC AGGATATGAT TGTTGGTGGA 105132 ||| || | ||| |||||| .......... .......... .......... .......... ..GATTTGGT TGTCGGTGGA 453 ACTGATAGTA CCTCCAACGC GATTGAGTTT GCGATGGCTG AAATTATGAT TAAACCAGAC 105192 ||||| | | | |||||||| | |||||||| || ||||||| ||||| ||| |||||||| ACTGACACAA CTTCCAACGC GGTTGAGTTT GCCATGGCTG AAATTTTGAA CAAACCAGAT 513 ATCCTGAGGA AATTACAAGA AGAAATAGAA ACAGTTGTGG GAAAGGATAA TATTGTGGAA 105252 |||||||| | || ||||| | |||| |||| |||||||||| |||| ||||| || |||||| ATCCTGAGAA AAATACAACA AGAAGTAGAT ACAGTTGTGG GAAAAGATAA CATAGTGGAA 573 GAGTCTCATA TTAAGCAATT ACCATATCTC TATGCAGTTT TTAAAGAAGT ATTGCGTTTA 105312 |||||||||| || | || || |||||||||| |||||||| | ||||||| |||| || GAGTCTCATA TTCAACAGTT ACCATATCTC TATGCAGTGA TGAAAGAAGC CATGCGCATA 633 CATCCACCTG CTCCACTATT GGCACCACAT TCTCCTAGTG AAACATGTAC TGTGGGAGGA 105372 |||||| | ||||| || ||| || ||| | |||||||| | ||| || ||| || ||| CATCCAGCCC TCCCACTCTT GGCTCCTCAT TGTCCTAGTG AGACAATCAC TGTTGGTGGA 693 TACACTGTTC CTAAAGGATG TTCTATTTT 105401 |||||||||| ||||||| | | | |||| TACACTGTTC CTAAAGGGTC TCGTGTTTT 722 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (103993 104427,105115 105401) ******************************************************************************** EST sequence 177 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 100504 to 106058): Exon 1 103993 104427 ( 435 n); cDNA 1 435 ( 435 n); score: 0.901 Intron 1 104428 105114 ( 687 n); Pd: 0.998 (s: 0.96), Pa: 0.999 (s: 0.84) Exon 2 105115 105216 ( 102 n); cDNA 436 537 ( 102 n); score: 0.843 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.890 537 0.998 C PGS_C08HBa0060C12.1+_SGN-E206806+ (103993 104427,105115 105216) Alignment (genomic DNA sequence = upper lines): AGACAATCGA TGAATTACTT CTATAGTAAG AAGGGTTTAC CAGTGAACGT TGGTGAGCAG 104052 |||| ||| | | |||||||| |||||| || | |||||||| ||||||| || |||||| ||| AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 60 ATGTTCTTGA CTGTGTTTAA TGTGATTACA AGCATGTTAT GGGGTAGCAC AGTGAAGGGT 104112 |||||||||| ||||| |||| |||||| ||| |||||||||| |||| |||| |||||||| ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 120 GAGGAAAGAG CTAATCTTGG GGCAGAGTTT AGGTATGTTG TGAGTGAGAT GGCTGCGCTG 104172 |||||||||| ||| |||||| || |||||| ||| |||||| ||| |||||| |||| | || GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 180 TGCAGTATTC CCAATCTTTC CGATTTCTAC CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT 104232 |||||||| |||||||||| ||||| ||| || || |||| |||||||||| |||||||||| ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 240 GTTACAAAGA AGATGAAGCT GCTGTTAAAG AGATTTGAGA AGATATTTGA TAGCATGATT 104292 |||| ||||| |||| ||| | | || ||||| |||||||| | |||||||||| ||||||||| GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 300 GATGAAAGAA AAAAATTGGA TAGAAATGGT GTTGGCCAAG AAATCAAAGA CTTTTTGCAA 104352 ||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||| |||||||||| GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 360 GTTTTGCTGA AGTTGAAAGA TGAAGCAGAT CCCAAAATGC CTATGACCAT GACTGAAATC 104412 |||||||| | |||||||||| |||||||||| ||||||||| || ||||||| |||||||||| GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 420 AAAGCCTTAC TTATGGTAAG TTTATCAGTT GTGCATTTTA CGAAAACTTG TTTTTTTCCA 104472 |||||||||| ||||| AAAGCCTTAC TTATG..... .......... .......... .......... .......... 435 AAAAGAAACC ATCCTGATGC AACCAAAGAT GCCTTATCTA TATGGATTAG TATTAGCTTA 104532 .......... .......... .......... .......... .......... .......... 435 CCCTGATCAT GATGACAGAA ACATCTTTTC TTTTTTATAT AAAATTTCAG AAGAATCAGC 104592 .......... .......... .......... .......... .......... .......... 435 TTTGTAAACT CATGTCCTGA GCTGTTGGTT GCGTTCTTCT GCTAGGAAAA TTCACTTTCA 104652 .......... .......... .......... .......... .......... .......... 435 TTAAGGGTGT GTTTGGTATG AAGGAAAACA TTTTCCGAAA ATTCTTTTCC TATTATCTCA 104712 .......... .......... .......... .......... .......... .......... 435 TGAATAAGTT TTGAAAATAT TTTCCGAACA ATCTTTTCCA AACATTTTCC TTCTTACCAA 104772 .......... .......... .......... .......... .......... .......... 435 ACATACCCTA AAAAGTTTGC TTTTTATTTT AAATAGTCAT CTGCTTACCT GTTAGGTAGT 104832 .......... .......... .......... .......... .......... .......... 435 TAACAGATGA AAAATTGGTT TATAGTGTTA TTTGTCATAA TAAGAGGATC AAATGCTAAT 104892 .......... .......... .......... .......... .......... .......... 435 ACAAGTTAAA ATTAGGATCA TAAATGTATT GAAGAATTAT TGTGGCATGC TACCATGTTA 104952 .......... .......... .......... .......... .......... .......... 435 TTGGACTGCC TTTATAGAAG AGTCCGCAAA TTTAGCATCT AAAAATATGT GAAGACTTAA 105012 .......... .......... .......... .......... .......... .......... 435 CTGTAAATTA AGACGGTGAA TCTTGAACTG AACTCCAATA TACAGTTCTA CAATTACAAA 105072 .......... .......... .......... .......... .......... .......... 435 AATTGTTGTA CATGATAATA ACTTCACAAA TACTATGTAC AGGATATGAT TGTTGGTGGA 105132 ||| || | ||| |||||| .......... .......... .......... .......... ..GATTTGGT TGTCGGTGGA 453 ACTGATAGTA CCTCCAACGC GATTGAGTTT GCGATGGCTG AAATTATGAT TAAACCAGAC 105192 ||||| | | | |||||||| | |||||||| || ||||||| ||||| ||| |||||||| ACTGACACAA CTTCCAACGC GGTTGAGTTT GCCATGGCTG AAATTTTGAA CAAACCAGAT 513 ATCCTGAGGA AATTACAAGA AGAA 105216 |||||||| | || ||||| | |||| ATCCTGAGAA AAATACAACA AGAA 537 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (103993 104427,105115 105216) ******************************************************************************** EST sequence 148 +strand 472 n (File: SGN-E205363+) 1 CAGGATCGCC TGTGAATGTT GGTGAACAGA TGTTTTTGAC TGCACTTAAT GTGATTACAA 61 GCATGTTATG GGGTGGCACA GTGAAGGGTG AGGAAAGAGC TACTCTTGGG GCAGAGGTTA 121 GGGATGTTGT GACTAAGATG AATGAGCTGT TAGTTACTCC AAATCTTTCC GATTTTTACC 181 CGGGGTTGGC CTGGTTTGAT TTGCAGGGTG TTAAAAAGAA GATGAAAGTG TTGGCAAAGA 241 GATATGATAA CATATTTGAG AGCATGATTG ATCAAAGACA AAAAATGAAT AGAAATGGGG 301 TTGGCCAAGA AAGCAAGGAC TTTTTGCAAG TTTTGCTGAA GTTGAAAGAT GAAGCAGATC 361 CCAAAATGCC TCTGACCATG ACTGAACTCA AAGCCTTACT TACGGATATG GTTGTTGGTG 421 GAACTGAAAC TAGTGCCAAC ACAGTTGAGT TTGCCATGAC TGAAATTATG AA Predicted gene structure (within gDNA segment 103019 to 106014): Exon 1 104026 104427 ( 402 n); cDNA 3 404 ( 402 n); score: 0.878 Intron 1 104428 105114 ( 687 n); Pd: 0.998 (s: 0.94), Pa: 0.999 (s: 0.82) Exon 2 105115 105181 ( 67 n); cDNA 405 471 ( 67 n); score: 0.836 MATCH C08HBa0060C12.1+ SGN-E205363+ 0.872 469 0.994 C PGS_C08HBa0060C12.1+_SGN-E205363+ (104026 104427,105115 105181) Alignment (genomic DNA sequence = upper lines): GGTTTACCAG TGAACGTTGG TGAGCAGATG TTCTTGACTG TGTTTAATGT GATTACAAGC 104085 || | || | |||| ||||| ||| |||||| || ||||||| ||||||| |||||||||| GGATCGCCTG TGAATGTTGG TGAACAGATG TTTTTGACTG CACTTAATGT GATTACAAGC 62 ATGTTATGGG GTAGCACAGT GAAGGGTGAG GAAAGAGCTA ATCTTGGGGC AGAGTTTAGG 104145 |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| |||| ||||| ATGTTATGGG GTGGCACAGT GAAGGGTGAG GAAAGAGCTA CTCTTGGGGC AGAGGTTAGG 122 TATGTTGTGA GTGAGATGGC TGCGCTGTGC AGTATTCCCA ATCTTTCCGA TTTCTACCCA 104205 ||||||||| | ||||| || ||||| || ||| | |||||||||| ||| ||||| GATGTTGTGA CTAAGATGAA TGAGCTGTTA GTTACTCCAA ATCTTTCCGA TTTTTACCCG 182 GGTTTGGCCT GGTTTGATTT CCAGGGTGTT ACAAAGAAGA TGAAGCTGCT GTTAAAGAGA 104265 || ||||||| |||||||||| ||||||||| | |||||||| |||| || | | ||||||| GGGTTGGCCT GGTTTGATTT GCAGGGTGTT AAAAAGAAGA TGAAAGTGTT GGCAAAGAGA 242 TTTGAGAAGA TATTTGATAG CATGATTGAT GAAAGAAAAA AATTGGATAG AAATGGTGTT 104325 | ||| || | ||||||| || |||||||||| ||||| ||| || || |||| |||||| ||| TATGATAACA TATTTGAGAG CATGATTGAT CAAAGACAAA AAATGAATAG AAATGGGGTT 302 GGCCAAGAAA TCAAAGACTT TTTGCAAGTT TTGCTGAAGT TGAAAGATGA AGCAGATCCC 104385 |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAAGAAA GCAAGGACTT TTTGCAAGTT TTGCTGAAGT TGAAAGATGA AGCAGATCCC 362 AAAATGCCTA TGACCATGAC TGAAATCAAA GCCTTACTTA TGGTAAGTTT ATCAGTTGTG 104445 ||||||||| |||||||||| |||| ||||| |||||||||| | AAAATGCCTC TGACCATGAC TGAACTCAAA GCCTTACTTA CG........ .......... 404 CATTTTACGA AAACTTGTTT TTTTCCAAAA AGAAACCATC CTGATGCAAC CAAAGATGCC 104505 .......... .......... .......... .......... .......... .......... 404 TTATCTATAT GGATTAGTAT TAGCTTACCC TGATCATGAT GACAGAAACA TCTTTTCTTT 104565 .......... .......... .......... .......... .......... .......... 404 TTTATATAAA ATTTCAGAAG AATCAGCTTT GTAAACTCAT GTCCTGAGCT GTTGGTTGCG 104625 .......... .......... .......... .......... .......... .......... 404 TTCTTCTGCT AGGAAAATTC ACTTTCATTA AGGGTGTGTT TGGTATGAAG GAAAACATTT 104685 .......... .......... .......... .......... .......... .......... 404 TCCGAAAATT CTTTTCCTAT TATCTCATGA ATAAGTTTTG AAAATATTTT CCGAACAATC 104745 .......... .......... .......... .......... .......... .......... 404 TTTTCCAAAC ATTTTCCTTC TTACCAAACA TACCCTAAAA AGTTTGCTTT TTATTTTAAA 104805 .......... .......... .......... .......... .......... .......... 404 TAGTCATCTG CTTACCTGTT AGGTAGTTAA CAGATGAAAA ATTGGTTTAT AGTGTTATTT 104865 .......... .......... .......... .......... .......... .......... 404 GTCATAATAA GAGGATCAAA TGCTAATACA AGTTAAAATT AGGATCATAA ATGTATTGAA 104925 .......... .......... .......... .......... .......... .......... 404 GAATTATTGT GGCATGCTAC CATGTTATTG GACTGCCTTT ATAGAAGAGT CCGCAAATTT 104985 .......... .......... .......... .......... .......... .......... 404 AGCATCTAAA AATATGTGAA GACTTAACTG TAAATTAAGA CGGTGAATCT TGAACTGAAC 105045 .......... .......... .......... .......... .......... .......... 404 TCCAATATAC AGTTCTACAA TTACAAAAAT TGTTGTACAT GATAATAACT TCACAAATAC 105105 .......... .......... .......... .......... .......... .......... 404 TATGTACAGG ATATGATTGT TGGTGGAACT GATAGTACCT CCAACGCGAT TGAGTTTGCG 105165 | ||||| |||| |||||||||| || | || ||||| | | ||||||||| .........G ATATGGTTGT TGGTGGAACT GAAACTAGTG CCAACACAGT TGAGTTTGCC 455 ATGGCTGAAA TTATGA 105181 ||| |||||| |||||| ATGACTGAAA TTATGA 471 hqPGS_C08HBa0060C12.1+_SGN-E205363+ (104026 104427,105115 105181) ******************************************************************************** EST sequence 92 +strand 260 n (File: SGN-E554086+) 1 ATCCCAGAAT GCCTATGACC CTGACTGAAT TCCAAGCCTT ACTTATGGAT ATGATTGTTG 61 GTGGAACTGA TAGTACCTCC GACGCGATTG AGTTTGCGAT GGCTGAAATT ATGATTAAAC 121 CGGACATCCT GAGGAAATTA CAAGAAGAAA TAGAAACAGT TGTGGGAAAG GATAATATTG 181 TGGAAGAGTC TCATATTAAG CAATTACCAT ATCTCTATGC AGTTTTTAAA GAAGTATTGT 241 CTTTACATCC ACCTGCTCCA Predicted gene structure (within gDNA segment 104054 to 105937): Exon 1 104381 104427 ( 47 n); cDNA 1 47 ( 47 n); score: 0.915 Intron 1 104428 105114 ( 687 n); Pd: 0.998 (s: 0.91), Pa: 0.999 (s: 0.98) Exon 2 105115 105327 ( 213 n); cDNA 48 260 ( 213 n); score: 0.981 MATCH C08HBa0060C12.1+ SGN-E554086+ 0.981 260 1.000 C PGS_C08HBa0060C12.1+_SGN-E554086+ (104381 104427,105115 105327) Alignment (genomic DNA sequence = upper lines): ATCCCAAAAT GCCTATGACC ATGACTGAAA TCAAAGCCTT ACTTATGGTA AGTTTATCAG 104440 |||||| ||| |||||||||| |||||||| || ||||||| ||||||| ATCCCAGAAT GCCTATGACC CTGACTGAAT TCCAAGCCTT ACTTATG... .......... 47 TTGTGCATTT TACGAAAACT TGTTTTTTTC CAAAAAGAAA CCATCCTGAT GCAACCAAAG 104500 .......... .......... .......... .......... .......... .......... 47 ATGCCTTATC TATATGGATT AGTATTAGCT TACCCTGATC ATGATGACAG AAACATCTTT 104560 .......... .......... .......... .......... .......... .......... 47 TCTTTTTTAT ATAAAATTTC AGAAGAATCA GCTTTGTAAA CTCATGTCCT GAGCTGTTGG 104620 .......... .......... .......... .......... .......... .......... 47 TTGCGTTCTT CTGCTAGGAA AATTCACTTT CATTAAGGGT GTGTTTGGTA TGAAGGAAAA 104680 .......... .......... .......... .......... .......... .......... 47 CATTTTCCGA AAATTCTTTT CCTATTATCT CATGAATAAG TTTTGAAAAT ATTTTCCGAA 104740 .......... .......... .......... .......... .......... .......... 47 CAATCTTTTC CAAACATTTT CCTTCTTACC AAACATACCC TAAAAAGTTT GCTTTTTATT 104800 .......... .......... .......... .......... .......... .......... 47 TTAAATAGTC ATCTGCTTAC CTGTTAGGTA GTTAACAGAT GAAAAATTGG TTTATAGTGT 104860 .......... .......... .......... .......... .......... .......... 47 TATTTGTCAT AATAAGAGGA TCAAATGCTA ATACAAGTTA AAATTAGGAT CATAAATGTA 104920 .......... .......... .......... .......... .......... .......... 47 TTGAAGAATT ATTGTGGCAT GCTACCATGT TATTGGACTG CCTTTATAGA AGAGTCCGCA 104980 .......... .......... .......... .......... .......... .......... 47 AATTTAGCAT CTAAAAATAT GTGAAGACTT AACTGTAAAT TAAGACGGTG AATCTTGAAC 105040 .......... .......... .......... .......... .......... .......... 47 TGAACTCCAA TATACAGTTC TACAATTACA AAAATTGTTG TACATGATAA TAACTTCACA 105100 .......... .......... .......... .......... .......... .......... 47 AATACTATGT ACAGGATATG ATTGTTGGTG GAACTGATAG TACCTCCAAC GCGATTGAGT 105160 |||||| |||||||||| |||||||||| ||||||| || |||||||||| .......... ....GATATG ATTGTTGGTG GAACTGATAG TACCTCCGAC GCGATTGAGT 93 TTGCGATGGC TGAAATTATG ATTAAACCAG ACATCCTGAG GAAATTACAA GAAGAAATAG 105220 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTGCGATGGC TGAAATTATG ATTAAACCGG ACATCCTGAG GAAATTACAA GAAGAAATAG 153 AAACAGTTGT GGGAAAGGAT AATATTGTGG AAGAGTCTCA TATTAAGCAA TTACCATATC 105280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGTTGT GGGAAAGGAT AATATTGTGG AAGAGTCTCA TATTAAGCAA TTACCATATC 213 TCTATGCAGT TTTTAAAGAA GTATTGCGTT TACATCCACC TGCTCCA 105327 |||||||||| |||||||||| |||||| || |||||||||| ||||||| TCTATGCAGT TTTTAAAGAA GTATTGTCTT TACATCCACC TGCTCCA 260 hqPGS_C08HBa0060C12.1+_SGN-E554086+ (104381 104427,105115 105327) ******************************************************************************** EST sequence 332 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 103666 to 107163): Exon 1 104384 104427 ( 44 n); cDNA 1 44 ( 44 n); score: 0.977 Intron 1 104428 105114 ( 687 n); Pd: 0.998 (s: 0.98), Pa: 0.999 (s: 0.84) Exon 2 105115 105731 ( 617 n); cDNA 45 661 ( 617 n); score: 0.864 MATCH C08HBa0060C12.1+ SGN-E378974- 0.864 661 0.908 C PGS_C08HBa0060C12.1+_SGN-E378974- (104384 104427,105115 105731) Alignment (genomic DNA sequence = upper lines): CCAAAATGCC TATGACCATG ACTGAAATCA AAGCCTTACT TATGGTAAGT TTATCAGTTG 104443 |||||||||| | |||||||| |||||||||| |||||||||| |||| CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATG...... .......... 44 TGCATTTTAC GAAAACTTGT TTTTTTCCAA AAAGAAACCA TCCTGATGCA ACCAAAGATG 104503 .......... .......... .......... .......... .......... .......... 44 CCTTATCTAT ATGGATTAGT ATTAGCTTAC CCTGATCATG ATGACAGAAA CATCTTTTCT 104563 .......... .......... .......... .......... .......... .......... 44 TTTTTATATA AAATTTCAGA AGAATCAGCT TTGTAAACTC ATGTCCTGAG CTGTTGGTTG 104623 .......... .......... .......... .......... .......... .......... 44 CGTTCTTCTG CTAGGAAAAT TCACTTTCAT TAAGGGTGTG TTTGGTATGA AGGAAAACAT 104683 .......... .......... .......... .......... .......... .......... 44 TTTCCGAAAA TTCTTTTCCT ATTATCTCAT GAATAAGTTT TGAAAATATT TTCCGAACAA 104743 .......... .......... .......... .......... .......... .......... 44 TCTTTTCCAA ACATTTTCCT TCTTACCAAA CATACCCTAA AAAGTTTGCT TTTTATTTTA 104803 .......... .......... .......... .......... .......... .......... 44 AATAGTCATC TGCTTACCTG TTAGGTAGTT AACAGATGAA AAATTGGTTT ATAGTGTTAT 104863 .......... .......... .......... .......... .......... .......... 44 TTGTCATAAT AAGAGGATCA AATGCTAATA CAAGTTAAAA TTAGGATCAT AAATGTATTG 104923 .......... .......... .......... .......... .......... .......... 44 AAGAATTATT GTGGCATGCT ACCATGTTAT TGGACTGCCT TTATAGAAGA GTCCGCAAAT 104983 .......... .......... .......... .......... .......... .......... 44 TTAGCATCTA AAAATATGTG AAGACTTAAC TGTAAATTAA GACGGTGAAT CTTGAACTGA 105043 .......... .......... .......... .......... .......... .......... 44 ACTCCAATAT ACAGTTCTAC AATTACAAAA ATTGTTGTAC ATGATAATAA CTTCACAAAT 105103 .......... .......... .......... .......... .......... .......... 44 ACTATGTACA GGATATGATT GTTGGTGGAA CTGATAGTAC CTCCAACGCG ATTGAGTTTG 105163 ||| || || || ||||||| |||| | || ||||||||| ||||||||| .......... .GATTTGGTT GTCGGTGGAA CTGACACAAC TTCCAACGCG GTTGAGTTTG 93 CGATGGCTGA AATTATGATT AAACCAGACA TCCTGAGGAA ATTACAAGAA GAAATAGAAA 105223 | |||||||| |||| ||| |||||||| | ||||||| || | ||||| || ||| |||| | CCATGGCTGA AATTTTGAAC AAACCAGATA TCCTGAGAAA AATACAACAA GAAGTAGATA 153 CAGTTGTGGG AAAGGATAAT ATTGTGGAAG AGTCTCATAT TAAGCAATTA CCATATCTCT 105283 |||||||||| ||| ||||| || ||||||| |||||||||| | | || ||| |||||||||| CAGTTGTGGG AAAAGATAAC ATAGTGGAAG AGTCTCATAT TCAACAGTTA CCATATCTCT 213 ATGCAGTTTT TAAAGAAGTA TTGCGTTTAC ATCCACCTGC TCCACTATTG GCACCACATT 105343 ||||||| | ||||||| |||| ||| ||||| | ||||| ||| || || |||| ATGCAGTGAT GAAAGAAGCC ATGCGCATAC ATCCAGCCCT CCCACTCTTG GCTCCTCATT 273 CTCCTAGTGA AACATGTACT GTGGGAGGAT ACACTGTTCC TAAAGGATGT TCTATTTTCA 105403 ||||||||| ||| ||| || || |||| |||||||||| |||||| | | | |||| GTCCTAGTGA GACAATCACT GTTGGTGGAT ACACTGTTCC TAAAGGGTCT CGTGTTTTTG 333 TAAACGTATG GGCTATACAG AGAGATCCTT CTATATGGAA AAATCCAACT GAGTTCCGTC 105463 |||| ||||| ||||||||| |||||||||| |||| ||||| ||||||||| |||||| ||| TAAATGTATG GGCTATACAC AGAGATCCTT CTATGTGGAA AAATCCAACA GAGTTCTGTC 393 CAGAGAGATT TTTGGACGAT AAATGCGATT GTAGTGGAAA TGATTTCAAC TATCTCCCAT 105523 |||||||||| |||||| || ||||| ||| ||||||||| |||||||||| ||| |||||| CAGAGAGATT TTTGGATAAT AAATGGAATT ATAGTGGAAA TGATTTCAAC TATTTCCCAT 453 TTGGTTCTGG AAGAAGACTG TGCGCGGGGA TAGGCATGGC AGAGAGGATG TTCATGTATT 105583 |||||||||| |||||| || || ||||||| ||| |||||| |||||||||| |||||||||| TTGGTTCTGG CAGAAGAATG TGTGCGGGGA TAGCCATGGC AGAGAGGATG TTCATGTATT 513 CACTTGCTTC GCTCATTCAT TCTTTCGACT GGAAATTGCC AGAAGGAGAG ACGTTAGACC 105643 |||| ||||| ||||||||| |||||||| | |||||||||| ||||||||| |||||||||| CACTGGCTTC ACTCATTCAT TCTTTCGATT GGAAATTGCC TGAAGGAGAG ACGTTAGACC 573 TCACAGAGAA GTTTGGGATT GTTCTGAAGA AGAAAATGCC TCTGGTGGCT ATACCTACTC 105703 | | |||||| |||| | ||| | | |||||| |||||||||| |||||||||| |||||||||| TTAAAGAGAA GTTTTGTATT GCTTTGAAGA AGAAAATGCC TCTGGTGGCT ATACCTACTC 633 CAAGATTGTC TGATCCAATA CTCTATGA 105731 |||||||||| |||||| | | ||||| CAAGATTGTC CAATCCAACA CAGTATGA 661 hqPGS_C08HBa0060C12.1+_SGN-E378974- (104384 104427,105115 105731) ******************************************************************************** EST sequence 80 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 100251 to 108880): Exon 1 103483 104296 ( 814 n); cDNA 1 814 ( 814 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E553649+ 1.000 814 1.000 C PGS_C08HBa0060C12.1+_SGN-E553649+ (103483 104296) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 103542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 103602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 103662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 103722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 240 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 103782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 300 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 103842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 360 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 103902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 420 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 103962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 480 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 104022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 540 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 104082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 600 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 104142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 660 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 104202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 720 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 104262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 780 AGATTTGAGA AGATATTTGA TAGCATGATT GATG 104296 |||||||||| |||||||||| |||||||||| |||| AGATTTGAGA AGATATTTGA TAGCATGATT GATG 814 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (103483 104296) ******************************************************************************** EST sequence 124 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 103050 to 104835): Exon 1 103650 104135 ( 486 n); cDNA 1 486 ( 486 n); score: 0.864 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.864 486 1.000 C PGS_C08HBa0060C12.1+_SGN-E318770+ (103650 104135) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGATCCTGAA CTTCACACCT ATTTTGCATC 103709 |||||||||| |||||||||| |||||||||| ||| ||| || |||||||||| |||| ||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTGTCCCAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTCAAAAAC TTGGGATTAT 103769 ||| ||| || |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TATTACTTCA CCAGAATTAG CTCGCGACGT TCTAAAGGAT AAAGATATTA TTTTTGCTAA 103829 | ||||||| || | |||| ||||||| || ||| |||||| ||||||| | |||||||||| TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGACGTG CCTGCTGCTG CAGTAGAAAT TTCATATGGT TGCAATGACA TACTTTGGAA 103889 |||||| ||| || ||||| |||| | | |||||||| | | ||||| || |||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TTCTTATGGA CCACAATGGC GAATGATGAG AAAGCTTTGT GTTCGCGATA TGCTTAGTTG 103949 | |||||||| || | |||| | ||| |||| ||| ||||| |||| || | |||||| | TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACTTTA GATTCTGTTT GTGCACTAAG GCGAAGGGAG CTTAGACAAT CGATGAATTA 104009 |||||||||| ||| || ||| |||||| || |||||||||| |||||||||| |||| ||||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTCTATAGT AAGAAGGGTT TACCAGTGAA CGTTGGTGAG CAGATGTTCT TGACTGTGTT 104069 ||| |||| | ||| || | || ||||| |||||||| |||||||| | |||||| | CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 420 TAATGTGATT ACAAGCATGT TATGGGGTAG CACAGTGAAG GGTGAGGAAA GAGCTAATCT 104129 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| ||| TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 480 TGGGGC 104135 |||||| TGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (103650 104135) ******************************************************************************** EST sequence 51 +strand 712 n (File: SGN-E551573+) 1 AGATAATATT GTAGAAGAGT CTCATATTCA GCAATTACCA TATCTCTATG CAGTGATGAA 61 AGAAGTATTG CGCATGCATC CAGCTACTCC GCTATTGGTG CCACATTGTC CAAGTGAAAC 121 ATGCACTGTG GGAGGATACA CTGTTCCTAA AGGATCTCGT GTTTTCATAA ATGTATGGGC 181 TATACAAAGA GATCCTTCTA TCTGGAGAAA TCCAACAGAG TTCCGTCCAG AGAGATTTTT 241 GGACAATAAA TGGGATTTTA GTGGAAATGA TTTCAACTAT TTTCCATTTG GTTCTGGCAG 301 AAGAATCTGT GTGGGGATAG GCATGGCAGA GAGGATGTTC ATGTATGCAC TGGCTTCGCT 361 CATTCATTCT TTTGATTGGA AATTGCCTGA AGGAGAGACA CCAGACCTTA CAGAGATGTT 421 TGATATTACT TTGAGGAAGA AAATTCCTCT GGTGACTATA CCTACTCCAA GATTGTCCAA 481 TCCAACACTC TATGAGTAAG ATAAAGATAT ATCTGTTGAG AGTCGTCTTC TGTATGATGA 541 TTCTGTATTA TCTCGAATCT GTGCATTTTC TTTACTATGT AAGAAATGTC ACTTTCTTCT 601 CTCTCTTGTT CAATGTTTAA ACCAACTTTG GTCNNNANAA ANAAAAAAAA AAAAAAAAAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAANNN NNNNNNNGGG GGGGGGGGGG GG Predicted gene structure (within gDNA segment 95066 to 109648): Exon 1 105238 105620 ( 383 n); cDNA 2 384 ( 383 n); score: 0.898 Intron 1 105621 108512 (2892 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.84) Exon 2 108513 108669 ( 157 n); cDNA 385 541 ( 157 n); score: 0.854 Intron 2 108670 109126 ( 457 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.60) Exon 3 109127 109204 ( 78 n); cDNA 542 615 ( 74 n); score: 0.654 PPA cDNA 662 688 MATCH C08HBa0060C12.1+ SGN-E551573+ 0.856 618 0.868 C PGS_C08HBa0060C12.1+_SGN-E551573+ (105238 105620,108513 108669,109127 109204) Alignment (genomic DNA sequence = upper lines): GATAATATTG TGGAAGAGTC TCATATTAAG CAATTACCAT ATCTCTATGC AGTTTTTAAA 105297 |||||||||| | |||||||| ||||||| || |||||||||| |||||||||| ||| | ||| GATAATATTG TAGAAGAGTC TCATATTCAG CAATTACCAT ATCTCTATGC AGTGATGAAA 61 GAAGTATTGC GTTTACATCC ACCTGCTCCA CTATTGGCAC CACATTCTCC TAGTGAAACA 105357 |||||||||| | | ||||| | || |||| ||||||| | |||||| ||| ||||||||| GAAGTATTGC GCATGCATCC AGCTACTCCG CTATTGGTGC CACATTGTCC AAGTGAAACA 121 TGTACTGTGG GAGGATACAC TGTTCCTAAA GGATGTTCTA TTTTCATAAA CGTATGGGCT 105417 || ||||||| |||||||||| |||||||||| |||| | | |||||||||| ||||||||| TGCACTGTGG GAGGATACAC TGTTCCTAAA GGATCTCGTG TTTTCATAAA TGTATGGGCT 181 ATACAGAGAG ATCCTTCTAT ATGGAAAAAT CCAACTGAGT TCCGTCCAGA GAGATTTTTG 105477 ||||| |||| |||||||||| |||| |||| ||||| |||| |||||||||| |||||||||| ATACAAAGAG ATCCTTCTAT CTGGAGAAAT CCAACAGAGT TCCGTCCAGA GAGATTTTTG 241 GACGATAAAT GCGATTGTAG TGGAAATGAT TTCAACTATC TCCCATTTGG TTCTGGAAGA 105537 ||| |||||| | |||| ||| |||||||||| ||||||||| | |||||||| |||||| ||| GACAATAAAT GGGATTTTAG TGGAAATGAT TTCAACTATT TTCCATTTGG TTCTGGCAGA 301 AGACTGTGCG CGGGGATAGG CATGGCAGAG AGGATGTTCA TGTATTCACT TGCTTCGCTC 105597 ||| | || | ||||||||| |||||||||| |||||||||| ||||| |||| ||||||||| AGAATCTGTG TGGGGATAGG CATGGCAGAG AGGATGTTCA TGTATGCACT GGCTTCGCTC 361 ATTCATTCTT TCGACTGGAA ATTGCCAGAA GGAGAGACGT TAGACCTCAC AGAGAAGTTT 105657 |||||||||| | || ||||| ||| ATTCATTCTT TTGATTGGAA ATT....... .......... .......... .......... 384 GGGATTGTTC TGAAGAAGAA AATGCCTCTG GTGGCTATAC CTACTCCAAG ATTGTCTGAT 105717 .......... .......... .......... .......... .......... .......... 384 CCAATACTCT ATGAGTAAGA TGTATTAGAA ATGTTTGGAT TAGTGATACT AGACTTAGCT 105777 .......... .......... .......... .......... .......... .......... 384 ATGCTAAGAT TATTATCATC TAAGATTATT ATCATCTATT GTTTGGTTTG ATGTATTAAG 105837 .......... .......... .......... .......... .......... .......... 384 AATAATTATG TTTTTAACCT ACTTATTCAT GTATTAATAG CACTTGTATT GCTAATACCA 105897 .......... .......... .......... .......... .......... .......... 384 GACTATGTAT TAGTTATTCG CTCTACTAAT CAGGTTGCAC AAAATGAATA TCCTACCAAA 105957 .......... .......... .......... .......... .......... .......... 384 TAAAGTACTC CCTCCGTTTT ACTATATTTG TCCTACTCTT CTTTTCATTT AATTTAACAA 106017 .......... .......... .......... .......... .......... .......... 384 ATGCCCTTTT TAGCAACACT TAAATTCCAA CTACAAAATT AAATGATATT TCAATATATT 106077 .......... .......... .......... .......... .......... .......... 384 TGATATATCT TTAAATTAAC ACCGTGAGAT TCACAACATG TTGTCTATGT TGGGAATAAA 106137 .......... .......... .......... .......... .......... .......... 384 CCCGTCACAA AAATGAAATT TGCAGTAATA AACTTCAAAA ACCACAACAT ATTCAAAACA 106197 .......... .......... .......... .......... .......... .......... 384 AATAATCCGC TTTTCATTTT CCCACCTCAT TACAATATCG CTTACACACT ATATTTTTCC 106257 .......... .......... .......... .......... .......... .......... 384 TCACGGACTA TTTTCCTTTG TGATGCCTCT CTCTAGTGTG CTACAGGAGT AGTTTTAATC 106317 .......... .......... .......... .......... .......... .......... 384 TCTTCCATGT CTCCAAGGAA ATTGAAGTTA GCCAAGTTAA ATTGGTAAAT GGGATGAACC 106377 .......... .......... .......... .......... .......... .......... 384 CCACTGTATG AGTGGGGACT AGGGAGGTAA ATGTGCTTCA TTTTCATAGT ACTGGTTTTT 106437 .......... .......... .......... .......... .......... .......... 384 TGTCTTAGGG TGTGTTTAGT ACGAAGGAAA ATGTTTAGTT GAAAAAAAAA AGGATTTCTA 106497 .......... .......... .......... .......... .......... .......... 384 AACTTTTTAT GTTTGGCAGA TGAGTAAAAA ATATTTTCTG AAATATTTTT TTTAATGTTT 106557 .......... .......... .......... .......... .......... .......... 384 GATTGGTGAA TAAAATATTT TTTCAGGAAA TATCATTTAT TTTTTGATTT GAGACTAGAA 106617 .......... .......... .......... .......... .......... .......... 384 TATATTTTTT AGGAAAATAA TTCTGATTTG AAACCCGATA TTTGATTTAG GACACGACCC 106677 .......... .......... .......... .......... .......... .......... 384 CGACACCCGA AGTAGGGGGT AGGGTAGGGG TGGTTTGGTG ATAGGAGCAA AAATATATTT 106737 .......... .......... .......... .......... .......... .......... 384 GAAATTTTAA AAATAAGAAA ATTTAAAATT TTTAATTCTT TTTGAAAGTG GATGGTCGAG 106797 .......... .......... .......... .......... .......... .......... 384 TACGGGGTAT GGATAGGTTA AAAAAATATT AAAGGATAAA ATAGAATTTT GGAATATGTT 106857 .......... .......... .......... .......... .......... .......... 384 TTCCTCAATT TTAGGAAGAA AGTCATTTTT TTAAAATTTG AAAAAAATAA GCTGATTTGA 106917 .......... .......... .......... .......... .......... .......... 384 AAAAACATTT TTCAATCGTC TTAAACTCAA ACAAACATGA TCTAAAATAT CTAATTGTAT 106977 .......... .......... .......... .......... .......... .......... 384 GAGCAAAATT TCCTGAAGTA TGCAAAAGCT TTGCTTCTTC CAATTTTTTC ATTTCCCTCA 107037 .......... .......... .......... .......... .......... .......... 384 AGTAATGTCT CTCAAATTCT TCAAACCCCT TTTGGATTCT TTCCCATGGC GTCTTCAAGA 107097 .......... .......... .......... .......... .......... .......... 384 ACTCAATCTT GAGCAAAAGG GTGTGTTTTT CTCCTGTTTT CTTGGGTTTT TAGCTTTACT 107157 .......... .......... .......... .......... .......... .......... 384 CTGGTGTTTC ATCAGTAACT CAAACAAGAG ATTGCCACCA GGGCCTAAAG CTTTGCCCTT 107217 .......... .......... .......... .......... .......... .......... 384 GATAGATAAT CTTCATTCTC TTGATCCTCA ACTTCACACC TATTTTGCAT CTCTTTCCCA 107277 .......... .......... .......... .......... .......... .......... 384 AACTTATGGC CCCATTTGTA GAATCTGGCT TGGTAAAACA CTTGGGATTA TTATTACTTC 107337 .......... .......... .......... .......... .......... .......... 384 TCCTGCTTTA GCTCGTGAGG TTCGTAAGGG TAAAGATACC ATTTTTGCTA ACAGAGATGT 107397 .......... .......... .......... .......... .......... .......... 384 CCCTGCTGCT GGAAGCGAAT TTTCATATGG TGGCAATAAC ATACTTTGGA CTCCTTATGG 107457 .......... .......... .......... .......... .......... .......... 384 GCCGAAATGG TGCATGTTGA GGAAAATTTG TGTTCGCGAT ATACTTAGTT CTTCTACTTT 107517 .......... .......... .......... .......... .......... .......... 384 AGATTCTGTT TATGCACTAA GGAAAAAGGA GCTTAGACAA TCAATCAATT ACTTTCTATA 107577 .......... .......... .......... .......... .......... .......... 384 ATAAGAAGGG TTTACCAGTG AATATTGGTG AACAGATGTT CTTGACTGTG CTTAATGTGA 107637 .......... .......... .......... .......... .......... .......... 384 TGACAAGCAT GTTATGGGGT GGCACAGTCA AGGGTGAGGA AGGAGCTAGC CTCGGAGCTG 107697 .......... .......... .......... .......... .......... .......... 384 AGTTTAGGCA TGTTGTGACT GAGATAGCTG CGTTGTGCAG TATTCCCAAT CTTTCCGATT 107757 .......... .......... .......... .......... .......... .......... 384 TTTACCCAGG CTTGGCTTGG TTTGATTTCC AGGGTGTTAC AAAGAAGATG AAGGTGTTGG 107817 .......... .......... .......... .......... .......... .......... 384 CAAAGATATT TGAGAGCATA ATTGATCAAA GACAAAAATT GGACAGAAAT GGTGTTGACC 107877 .......... .......... .......... .......... .......... .......... 384 AAGAAACCAA AGACTTTTTG CAAGTTTTGC TAAAGTTGAA AGATGAAGCA GATTCCAAAA 107937 .......... .......... .......... .......... .......... .......... 384 TACCTGACCA TGACTGAAAT CAAAGCCTTA CTTATGGTAT GTTTATCAGT TGTGCATTCT 107997 .......... .......... .......... .......... .......... .......... 384 ACTAAATTTG CTTTTTCCAA ATGAATCTAA AGGAAATCTT CCTCTCCCCA ATTCACAAAT 108057 .......... .......... .......... .......... .......... .......... 384 TTCAAATTAA TAATAGTCAT CTCTGCATTA TTAATGAGTA GCCTAGAATC AAGTTTGTAT 108117 .......... .......... .......... .......... .......... .......... 384 TTGTCTTCCA CTATTCATAC TGGCTTACAC TGATCATGAT GGCAGATCTT CTCTTTTTTT 108177 .......... .......... .......... .......... .......... .......... 384 TATATTAAAA GGATCAAAAT CTAATGATAC TGATTGTGGG CTTGTTAATT TATAGAAGAA 108237 .......... .......... .......... .......... .......... .......... 384 TATGGGAAAT GAATTTCAGA AGAATCCGAT TTGTAGAATC ATGTCCTGAG CTGTTGGTTG 108297 .......... .......... .......... .......... .......... .......... 384 GGCTCTTCTG CTTGAAAATT TACTTTCATT ACATGTGGTC CTGGTTACAA AGTTTTTACT 108357 .......... .......... .......... .......... .......... .......... 384 TGAAATAGTC CATTTCGTTA CATGTTAGGT TGTCATAGAT GAAAAATTGG CTTATTTATT 108417 .......... .......... .......... .......... .......... .......... 384 ACCATGTTAT TGGACTGCAT TAAAGAAAGA GTCGGCAAAT TTAGCATCAG ATAATATGTG 108477 .......... .......... .......... .......... .......... .......... 384 AAGACTTAAC TCATTCATTC TTTCGACTGG AAATTGCCTG AAGGAGAGAC ATTAGACCTT 108537 ||||| |||||||||| | ||||||| .......... .......... .......... .....GCCTG AAGGAGAGAC ACCAGACCTT 409 ACAGAAAAGT TTGGTATTTT ATTGAAGAAG AAAATACCTC TGGTGGCTAT ACCTACTCCA 108597 ||||| | || ||| |||| |||| |||| ||||| |||| ||||| |||| |||||||||| ACAGAGATGT TTGATATTAC TTTGAGGAAG AAAATTCCTC TGGTGACTAT ACCTACTCCA 469 AGATTATCCA ATCCAACACT GTATGAGTAA GATAAAAATG TGTTTGCAGA GTGTCGTGTT 108657 ||||| |||| |||||||||| ||||||||| |||||| || | | || || | ||||| || AGATTGTCCA ATCCAACACT CTATGAGTAA GATAAAGATA TATCTGTTGA GAGTCGTCTT 529 CTGTGTGATG AAATTAAGAA TATAAAACCT ACAATTCAGT GTGCTTGAAT TACCACTAGT 108717 |||| ||||| | CTGTATGATG AT........ .......... .......... .......... .......... 541 TCAGTAGGTC TATTCCAGAG TCTTGGCAAC ATACAGGCAT GAAGCTCCTG TTTGTAAGAT 108777 .......... .......... .......... .......... .......... .......... 541 AAAAATAAGC CCCAATTTCA TTCTGTAAAT TCAGAACCTT ATGAAAGGCC TGAGCTCTGT 108837 .......... .......... .......... .......... .......... .......... 541 TACAGTCATG GTCAGTGATA ATTATTTACT TAGTGGTCAT ATAACGCGTA AAAATATCAC 108897 .......... .......... .......... .......... .......... .......... 541 ATCCTAAAAA ACAATTTTTT TTTCTTTAAA CCTTAGTTAG ACACATCAGT TCTGCTTTGA 108957 .......... .......... .......... .......... .......... .......... 541 AGCTGAAGCA CCAGTAAAGT TGAGCAGGTA TGTTCTTATT CATCGTGTGG TTCTGCACAC 109017 .......... .......... .......... .......... .......... .......... 541 TTTCAATGTT CAGTTTTTTG TCTTGTCCAA CATATTTTTA TTCTTTAGGA TATTTTATTT 109077 .......... .......... .......... .......... .......... .......... 541 TTATATATGG TATTGAAGGA TTGAGTTTTT CTTGGCAAAA AGGACCTTAT GTATGTTATG 109137 | | | |||| .......... .......... .......... .......... .........T CTGTATTATC 552 TCAATTGTGA CATGTGCATT TTCTACTATA TAGGACAAGT CACTTTCTTT TGATGTGTTA 109197 || | | || || || | |||||| || || | || ||||||||| | | | || TCGAATCTG- --TGCATTTT CTTTACTATG TAAGAAATGT CACTTTCTTC T-CTCTCTTG 608 TTCATTG 109204 |||| || TTCAATG 615 hqPGS_C08HBa0060C12.1+_SGN-E551573+ (105238 105620,108513 108669) ******************************************************************************** EST sequence 199 +strand 673 n (File: SGN-E320419+) 1 TTTGGGAAAA TCCAACTGAG TTCCATCCGG AAAGATTTAT GGAGAATAAA TGGGACTTCA 61 GTGGAAATGA TTTGACCTAC TTCCCGTTTG GTTCTGGCAG AAGAATCTGT GTGGGGTTAG 121 CCATGGCAGA GAGGATGTTC ATGTATTCAC TGGCTTCACT TATTCATTCT TTTGACTGGA 181 AATTGCCTGA AGGAGAGACA TTAGACTTTA CAGAGAAGTT TGTGCTCGTT CTGAAGAAGA 241 AAATGCCTCT GGTGGCTATA CCTACTCCAA GATTATCCAA TCCAACACTC TATGAGACAG 301 ACAAGGTATC AAAAAGTGAA GATTCATTTG TGTTAAACAA CAAGGGGCCA TTGACTTCAT 361 CACTAAATAT AAATGTTGAA GTGGAAAATG GCTTCCCACC ACACTGTTTC TGCCATTTCT 421 CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC TTCAAACCTT TGTGTGATTC 481 TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT GGTGTATTTT TCTCCTATGT 541 TCTTGGCAGT TTAGCTTTAA TATGGTTTCT TTGTTTTTAC ATCAACAAGT CAAAGGAGGG 601 ACGACCGCCA TTATGGGCCT AAAGCTTTGC CTTTGCTANG TAATCTCCAC TCTCTTGATC 661 CCAACTTCAC ACC Predicted gene structure (within gDNA segment 103748 to 113067): Exon 1 105439 105731 ( 293 n); cDNA 3 295 ( 293 n); score: 0.870 Intron 1 105732 105920 ( 189 n); Pd: 0.324 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 105921 105944 ( 24 n); cDNA 296 319 ( 24 n); score: 0.625 Intron 2 105945 105992 ( 48 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.53) Exon 3 105993 106040 ( 48 n); cDNA 320 367 ( 48 n); score: 0.531 Intron 3 106041 106345 ( 305 n); Pd: 0.000 (s: 0.53), Pa: 0.000 (s: 0.62) Exon 4 106346 106386 ( 41 n); cDNA 368 409 ( 42 n); score: 0.622 Intron 4 106387 107005 ( 619 n); Pd: 0.000 (s: 0.62), Pa: 0.000 (s: 0.62) Exon 5 107006 107167 ( 162 n); cDNA 410 571 ( 162 n); score: 0.704 Intron 5 107168 108735 (1568 n); Pd: 0.000 (s: 0.78), Pa: 0.328 (s: 0) Exon 6 108736 108748 ( 13 n); cDNA 572 584 ( 13 n); score: 0.615 MATCH C08HBa0060C12.1+ SGN-E320419+ 0.811 581 0.863 C PGS_C08HBa0060C12.1+_SGN-E320419+ (105439 105731,105921 105944,105993 106040,106346 106386,107006 107167,108736 108748) Alignment (genomic DNA sequence = upper lines): TGGAAAAATC CAACTGAGTT CCGTCCAGAG AGATTTTTGG ACGATAAATG CGATTGTAGT 105498 ||| |||||| |||||||||| || ||| || |||||| ||| | ||||||| || | ||| TGGGAAAATC CAACTGAGTT CCATCCGGAA AGATTTATGG AGAATAAATG GGACTTCAGT 62 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 105558 |||||||||| | | ||| | ||| |||||| ||||| |||| || | || | |||| ||| | GGAAATGATT TGACCTACTT CCCGTTTGGT TCTGGCAGAA GAATCTGTGT GGGGTTAGCC 122 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 105618 |||||||||| |||||||||| ||||||||| ||||| || | |||||||||| ||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTG GCTTCACTTA TTCATTCTTT TGACTGGAAA 182 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 105678 ||||| |||| ||||||| || |||| | ||| |||||||||| | | ||||| |||||||||| TTGCCTGAAG GAGAGACATT AGACTTTACA GAGAAGTTTG TGCTCGTTCT GAAGAAGAAA 242 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 105738 |||||||||| |||||||||| |||||||||| || || ||| ||| |||||| ||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTATCCAATC CAACACTCTA TGA....... 295 GTATTAGAAA TGTTTGGATT AGTGATACTA GACTTAGCTA TGCTAAGATT ATTATCATCT 105798 .......... .......... .......... .......... .......... .......... 295 AAGATTATTA TCATCTATTG TTTGGTTTGA TGTATTAAGA ATAATTATGT TTTTAACCTA 105858 .......... .......... .......... .......... .......... .......... 295 CTTATTCATG TATTAATAGC ACTTGTATTG CTAATACCAG ACTATGTATT AGTTATTCGC 105918 .......... .......... .......... .......... .......... .......... 295 TCTACTAATC AGGTTGCACA AAATGAATAT CCTACCAAAT AAAGTACTCC CTCCGTTTTA 105978 || | |||| || | || ||| ..GACAGACA AGGTATCAAA AAGTGA.... .......... .......... .......... 319 CTATATTTGT CCTACTCTTC TTTTCATTTA ATTTAACAA- ATGCCCTTTT TAGCAACACT 106037 ||| ||| ||| | ||||| ||| || || |||| .......... ....AGATTC ATTTGTGTTA A-ACAACAAG GGGCCATTGA CTTCATCACT 364 TAAATTCCAA CTACAAAATT AAATGATATT TCAATATATT TGATATATCT TTAAATTAAC 106097 || AAA....... .......... .......... .......... .......... .......... 367 ACCGTGAGAT TCACAACATG TTGTCTATGT TGGGAATAAA CCCGTCACAA AAATGAAATT 106157 .......... .......... .......... .......... .......... .......... 367 TGCAGTAATA AACTTCAAAA ACCACAACAT ATTCAAAACA AATAATCCGC TTTTCATTTT 106217 .......... .......... .......... .......... .......... .......... 367 CCCACCTCAT TACAATATCG CTTACACACT ATATTTTTCC TCACGGACTA TTTTCCTTTG 106277 .......... .......... .......... .......... .......... .......... 367 TGATGCCTCT CTCTAGTGTG CTACAGGAGT AGTTTTAATC TCTTCCATGT CTCCAAGGAA 106337 .......... .......... .......... .......... .......... .......... 367 ATTGAAGTTA GCCAAGTTAA ATTGGTAAAT GGGAT-GAAC CCCACTGTAT GAGTGGGGAC 106396 || | ||| | | ||| |||| || | || | |||||| | ........TA TAAATGTTGA AGTGGAAAAT GGCTTCCCAC CACACTGTTT .......... 409 TAGGGAGGTA AATGTGCTTC ATTTTCATAG TACTGGTTTT TTGTCTTAGG GTGTGTTTAG 106456 .......... .......... .......... .......... .......... .......... 409 TACGAAGGAA AATGTTTAGT TGAAAAAAAA AAGGATTTCT AAACTTTTTA TGTTTGGCAG 106516 .......... .......... .......... .......... .......... .......... 409 ATGAGTAAAA AATATTTTCT GAAATATTTT TTTTAATGTT TGATTGGTGA ATAAAATATT 106576 .......... .......... .......... .......... .......... .......... 409 TTTTCAGGAA ATATCATTTA TTTTTTGATT TGAGACTAGA ATATATTTTT TAGGAAAATA 106636 .......... .......... .......... .......... .......... .......... 409 ATTCTGATTT GAAACCCGAT ATTTGATTTA GGACACGACC CCGACACCCG AAGTAGGGGG 106696 .......... .......... .......... .......... .......... .......... 409 TAGGGTAGGG GTGGTTTGGT GATAGGAGCA AAAATATATT TGAAATTTTA AAAATAAGAA 106756 .......... .......... .......... .......... .......... .......... 409 AATTTAAAAT TTTTAATTCT TTTTGAAAGT GGATGGTCGA GTACGGGGTA TGGATAGGTT 106816 .......... .......... .......... .......... .......... .......... 409 AAAAAAATAT TAAAGGATAA AATAGAATTT TGGAATATGT TTTCCTCAAT TTTAGGAAGA 106876 .......... .......... .......... .......... .......... .......... 409 AAGTCATTTT TTTAAAATTT GAAAAAAATA AGCTGATTTG AAAAAACATT TTTCAATCGT 106936 .......... .......... .......... .......... .......... .......... 409 CTTAAACTCA AACAAACATG ATCTAAAATA TCTAATTGTA TGAGCAAAAT TTCCTGAAGT 106996 .......... .......... .......... .......... .......... .......... 409 ATGCAAAAGC TTTGCTTCTT CCAATTTTTT CATTTCCCTC AAGTAATGTC TCTCAAATTC 107056 | | || | | |||||| || || | ||||||| || |||||| .........C TGCCATTTCT CTCATTTTTC TCTTAGGCTG ATATAATGTC ACTAAAATTC 460 TTCAAACCCC TTTTGGATTC TTTCCCATGG CGTCTTCAAG AACTCAATCT TGAGCAAAAG 107116 |||||||| | | ||||| |||||||||| | |||| ||| ||| |||| | | TTCAAACCTT TGTGTGATTC TTTCCCATGG CCCTGGCAAG AACAAAATAG TGAGAAGAGT 520 GGTGTGTTTT TCTCCTGTTT TCTTGGGTTT TTAGCTTTAC TCTGGTGTTT CATCAGTAAC 107176 ||||| |||| |||||| | | |||||| | ||||||||| | |||| | | GGTGTATTTT TCTCCTATGT TCTTGGCAGT TTAGCTTTAA TATGGTTTCT T......... 571 TCAAACAAGA GATTGCCACC AGGGCCTAAA GCTTTGCCCT TGATAGATAA TCTTCATTCT 107236 .......... .......... .......... .......... .......... .......... 571 CTTGATCCTC AACTTCACAC CTATTTTGCA TCTCTTTCCC AAACTTATGG CCCCATTTGT 107296 .......... .......... .......... .......... .......... .......... 571 AGAATCTGGC TTGGTAAAAC ACTTGGGATT ATTATTACTT CTCCTGCTTT AGCTCGTGAG 107356 .......... .......... .......... .......... .......... .......... 571 GTTCGTAAGG GTAAAGATAC CATTTTTGCT AACAGAGATG TCCCTGCTGC TGGAAGCGAA 107416 .......... .......... .......... .......... .......... .......... 571 TTTTCATATG GTGGCAATAA CATACTTTGG ACTCCTTATG GGCCGAAATG GTGCATGTTG 107476 .......... .......... .......... .......... .......... .......... 571 AGGAAAATTT GTGTTCGCGA TATACTTAGT TCTTCTACTT TAGATTCTGT TTATGCACTA 107536 .......... .......... .......... .......... .......... .......... 571 AGGAAAAAGG AGCTTAGACA ATCAATCAAT TACTTTCTAT AATAAGAAGG GTTTACCAGT 107596 .......... .......... .......... .......... .......... .......... 571 GAATATTGGT GAACAGATGT TCTTGACTGT GCTTAATGTG ATGACAAGCA TGTTATGGGG 107656 .......... .......... .......... .......... .......... .......... 571 TGGCACAGTC AAGGGTGAGG AAGGAGCTAG CCTCGGAGCT GAGTTTAGGC ATGTTGTGAC 107716 .......... .......... .......... .......... .......... .......... 571 TGAGATAGCT GCGTTGTGCA GTATTCCCAA TCTTTCCGAT TTTTACCCAG GCTTGGCTTG 107776 .......... .......... .......... .......... .......... .......... 571 GTTTGATTTC CAGGGTGTTA CAAAGAAGAT GAAGGTGTTG GCAAAGATAT TTGAGAGCAT 107836 .......... .......... .......... .......... .......... .......... 571 AATTGATCAA AGACAAAAAT TGGACAGAAA TGGTGTTGAC CAAGAAACCA AAGACTTTTT 107896 .......... .......... .......... .......... .......... .......... 571 GCAAGTTTTG CTAAAGTTGA AAGATGAAGC AGATTCCAAA ATACCTGACC ATGACTGAAA 107956 .......... .......... .......... .......... .......... .......... 571 TCAAAGCCTT ACTTATGGTA TGTTTATCAG TTGTGCATTC TACTAAATTT GCTTTTTCCA 108016 .......... .......... .......... .......... .......... .......... 571 AATGAATCTA AAGGAAATCT TCCTCTCCCC AATTCACAAA TTTCAAATTA ATAATAGTCA 108076 .......... .......... .......... .......... .......... .......... 571 TCTCTGCATT ATTAATGAGT AGCCTAGAAT CAAGTTTGTA TTTGTCTTCC ACTATTCATA 108136 .......... .......... .......... .......... .......... .......... 571 CTGGCTTACA CTGATCATGA TGGCAGATCT TCTCTTTTTT TTATATTAAA AGGATCAAAA 108196 .......... .......... .......... .......... .......... .......... 571 TCTAATGATA CTGATTGTGG GCTTGTTAAT TTATAGAAGA ATATGGGAAA TGAATTTCAG 108256 .......... .......... .......... .......... .......... .......... 571 AAGAATCCGA TTTGTAGAAT CATGTCCTGA GCTGTTGGTT GGGCTCTTCT GCTTGAAAAT 108316 .......... .......... .......... .......... .......... .......... 571 TTACTTTCAT TACATGTGGT CCTGGTTACA AAGTTTTTAC TTGAAATAGT CCATTTCGTT 108376 .......... .......... .......... .......... .......... .......... 571 ACATGTTAGG TTGTCATAGA TGAAAAATTG GCTTATTTAT TACCATGTTA TTGGACTGCA 108436 .......... .......... .......... .......... .......... .......... 571 TTAAAGAAAG AGTCGGCAAA TTTAGCATCA GATAATATGT GAAGACTTAA CTCATTCATT 108496 .......... .......... .......... .......... .......... .......... 571 CTTTCGACTG GAAATTGCCT GAAGGAGAGA CATTAGACCT TACAGAAAAG TTTGGTATTT 108556 .......... .......... .......... .......... .......... .......... 571 TATTGAAGAA GAAAATACCT CTGGTGGCTA TACCTACTCC AAGATTATCC AATCCAACAC 108616 .......... .......... .......... .......... .......... .......... 571 TGTATGAGTA AGATAAAAAT GTGTTTGCAG AGTGTCGTGT TCTGTGTGAT GAAATTAAGA 108676 .......... .......... .......... .......... .......... .......... 571 ATATAAAACC TACAATTCAG TGTGCTTGAA TTACCACTAG TTCAGTAGGT CTATTCCAGA 108736 .......... .......... .......... .......... .......... .........T 572 GTCTTGGCAA CA 108748 || || || || GTTTTTACAT CA 584 hqPGS_C08HBa0060C12.1+_SGN-E320419+ (105439 105731,105921 105944,105993 106040,106346 106386,107006 107167) ******************************************************************************** EST sequence 296 -strand 362 n (File: SGN-E234103-) 1 CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 61 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 121 GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 181 ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 241 AGAAGAAGAT GTCTTATGGT ATTTAGTGAT TATTTTGTTC TTTATTTTGT GAATGATGAT 301 GTTTTTTTCT GGATTACTAT CTCAAAATAT CAAGTAAGCA TTATTAAAAA AAAAAAAAAA 361 AA Predicted gene structure (within gDNA segment 104713 to 107427): Exon 1 105431 105689 ( 259 n); cDNA 1 260 ( 260 n); score: 0.913 PPA cDNA 346 362 MATCH C08HBa0060C12.1+ SGN-E234103- 0.913 259 0.715 C PGS_C08HBa0060C12.1+_SGN-E234103- (105431 105689) Alignment (genomic DNA sequence = upper lines): CTTCTATATG GAAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC GATAAATGCG 105490 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||| || | CTTCTATATG GGAAAATCCA ACTGAGTTCC GTCCAGAGAG ATTTTTGGAC AATAAGTGGG 60 ATTGTAGTGG AAATGATTTC AACTATCTCC CATTTGGTTC TGGAAGAAGA CTGTGCGCGG 105550 ||| |||||| |||||||||| |||||| ||| |||||||||| ||| |||||| | || |||| ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATCTGTGCGG 120 GGATAGGCAT GGCAGAGAGG ATGTTCATGT ATTCACTTGC TTCGCTCATT CATTCTTTCG 105610 |||||||||| |||| ||||| |||||||||| ||||||| || ||| ||| | |||||||||| GGATAGGCAT GGCAAAGAGG ATGTTCATGT ATTCACTGGC TTCACTCGTG CATTCTTTCG 180 ACTGGAAATT GCCAGAAGGA GAGACGTTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 105670 |||||||||| ||| |||||| ||||| |||| |||||||||| |||||||||| |||||||||| ACTGGAAATT GCCTGAAGGA GAGACATTAG ACCTCACAGA GAAGTTTGGG ATTGTTCTGA 240 AGAAGAAAAT G-CCTCTGGT 105689 ||||||| || | | | |||| AGAAGAAGAT GTCTTATGGT 260 hqPGS_C08HBa0060C12.1+_SGN-E234103- (105431 105689) ******************************************************************************** EST sequence 307 -strand 360 n (File: SGN-E234174-) 1 CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 61 TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 121 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 181 TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 241 AAGAAGATGT CTTATGGTAT TTAGTGATTA TTTTGTTCTT TATTTTGTGA ATGATGATGT 301 TTTTTTCTGG ATTACTATCT CAAAATATCA AGTAAGCATT ATTAAAGATA AAAAAAAAAA Predicted gene structure (within gDNA segment 104616 to 107427): Exon 1 105434 105689 ( 256 n); cDNA 1 258 ( 258 n); score: 0.898 PPA cDNA 350 360 MATCH C08HBa0060C12.1+ SGN-E234174- 0.898 256 0.711 C PGS_C08HBa0060C12.1+_SGN-E234174- (105434 105689) Alignment (genomic DNA sequence = upper lines): CTATATGGAA AAATCCAACT GA-GTTCCGT CCAGAGAGAT TTTTGGACGA TAAATGCGAT 105492 |||||||| | |||||| ||| || ||||||| |||||||||| |||||||| | ||| || ||| CTATATGGGA AAATCCCACT GAGGTTCCGT CCAGAGAGAT TTTTGGACAA TAAGTGGGAT 60 TGTAGTGGAA ATGATTTCAA CTATCTCCCA TTTGGTTCTG GAAGAAGACT GTGCGCGGGG 105552 | |||||||| |||||||||| |||| ||||| |||||||||| | |||||| | || |||||| TATAGTGGAA ATGATTTCAA CTATTTCCCA TTTGGTTCTG GCAGAAGAAT CTGTGCGGGG 120 ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTTGCTT CGCTCATTCA TTCTTTCGAC 105612 |||||||||| |||||||||| |||||||||| ||||| |||| | ||| | || |||||||||| ATAGGCATGG CAGAGAGGAT GTTCATGTAT TCACTGGCTT CACTCGTGCA TTCTTTCGAC 180 TGGAAATTGC CAGAAGGAGA GACGTTAGAC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 105672 |||||||||| | |||||||| ||| |||| | |||||||||| |||||||||| |||||||||| TGGAAATTGC CTGAAGGAGA GACATTAGGC CTCACAGAGA AGTTTGGGAT TGTTCTGAAG 240 AAGAAAATG- CCTCTGGT 105689 ||||| ||| | | |||| AAGAAGATGT CTTATGGT 258 hqPGS_C08HBa0060C12.1+_SGN-E234174- (105434 105689) ******************************************************************************** EST sequence 133 +strand 265 n (File: SGN-E243190+) 1 GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 61 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 121 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 181 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 241 GTATTAGAAA TGTTTGGATT AGTGA Predicted gene structure (within gDNA segment 104899 to 106373): Exon 1 105499 105763 ( 265 n); cDNA 1 265 ( 265 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E243190+ 1.000 265 1.000 C PGS_C08HBa0060C12.1+_SGN-E243190+ (105499 105763) Alignment (genomic DNA sequence = upper lines): GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 105558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAATGATT TCAACTATCT CCCATTTGGT TCTGGAAGAA GACTGTGCGC GGGGATAGGC 60 ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 105618 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCAGAGA GGATGTTCAT GTATTCACTT GCTTCGCTCA TTCATTCTTT CGACTGGAAA 120 TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 105678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCAGAAG GAGAGACGTT AGACCTCACA GAGAAGTTTG GGATTGTTCT GAAGAAGAAA 180 ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 105738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTCTGG TGGCTATACC TACTCCAAGA TTGTCTGATC CAATACTCTA TGAGTAAGAT 240 GTATTAGAAA TGTTTGGATT AGTGA 105763 |||||||||| |||||||||| ||||| GTATTAGAAA TGTTTGGATT AGTGA 265 hqPGS_C08HBa0060C12.1+_SGN-E243190+ (105499 105763) ******************************************************************************** EST sequence 81 +strand 814 n (File: SGN-E553649+) 1 ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 61 AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 121 TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 181 GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 241 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 301 GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 361 GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 421 CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 481 TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTACTT CTATAGTAAG 541 AAGGGTTTAC CAGTGAACGT TGGTGAGCAG ATGTTCTTGA CTGTGTTTAA TGTGATTACA 601 AGCATGTTAT GGGGTAGCAC AGTGAAGGGT GAGGAAAGAG CTAATCTTGG GGCAGAGTTT 661 AGGTATGTTG TGAGTGAGAT GGCTGCGCTG TGCAGTATTC CCAATCTTTC CGATTTCTAC 721 CCAGGTTTGG CCTGGTTTGA TTTCCAGGGT GTTACAAAGA AGATGAAGCT GCTGTTAAAG 781 AGATTTGAGA AGATATTTGA TAGCATGATT GATG Predicted gene structure (within gDNA segment 106442 to 113127): Exon 1 107042 107856 ( 815 n); cDNA 1 813 ( 813 n); score: 0.874 MATCH C08HBa0060C12.1+ SGN-E553649+ 0.874 815 1.001 C PGS_C08HBa0060C12.1+_SGN-E553649+ (107042 107856) Alignment (genomic DNA sequence = upper lines): ATGTCTCTCA AATTCTTCAA ACCCCTTTTG GATTCTTTCC CATGGCGTCT TCAAGAACTC 107101 |||||||||| |||||||||| ||||||||| |||||||||| |||||| || |||| ||||| ATGTCTCTCA AATTCTTCAA ACCCCTTTTT GATTCTTTCC CATGGCCCCT TCAACAACTC 60 AATCTTGAGC AAAAGGGTGT GTTTTTCTCC TGTTTTCTTG GGTTTTTAGC TTTACTCTGG 107161 ||| |||||| || ||| | | ||||||| | |||||||||| | |||||||| |||||| ||| AATGTTGAGC AACAGGCTAT GTTTTTCGTC TGTTTTCTTG GTTTTTTAGC TTTACTTTGG 120 TGTTTCATCA GTAACTCAAA CAAGAGATTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 107221 | |||||||| ||||||| || ||| | || |||||||||| |||||||||| |||||||||| TTTTTCATCA GTAACTCGAA CAAAGGTCTG CCACCAGGGC CTAAAGCTTT GCCCTTGATA 180 GATAATCTTC ATTCTCTTGA TCCTCAACTT CACACCTATT TTGCATCTCT TTCCCAAACT 107281 | |||||| | |||||||||| |||| ||||| |||||||||| |||||||||| ||||||| | GGTAATCTCC ATTCTCTTGA TCCTGAACTT CACACCTATT TTGCATCTCT GTCCCAAATT 240 TATGGCCCCA TTTGTAGAAT CTGGCTTGGT AAAACACTTG GGATTATTAT TACTTCTCCT 107341 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||| || TATGGCCCCA TTTGTAGAAT CTGGCTTGGT CAAAAACTTG GGATTATTAT TACTTCACCA 300 GCTTTAGCTC GTGAGGTTCG TAAGGGTAAA GATACCATTT TTGCTAACAG AGATGTCCCT 107401 | ||||||| | || |||| |||| |||| |||| |||| |||||||||| ||| || ||| GAATTAGCTC GCGACGTTCT AAAGGATAAA GATATTATTT TTGCTAACAG AGACGTGCCT 360 GCTGCTGGAA GCGAATTTTC ATATGGTGGC AATAACATAC TTTGGACTCC TTATGGGCCG 107461 ||||||| | ||| |||| ||||||| || ||| |||||| |||||| | | |||||| || GCTGCTGCAG TAGAAATTTC ATATGGTTGC AATGACATAC TTTGGAATTC TTATGGACCA 420 AAATGGTGCA TGTTGAGGAA AATTTGTGTT CGCGATATAC TTAGTTCTTC TACTTTAGAT 107521 ||||| | | || |||| || |||||||| |||||||| | |||||| ||| |||||||||| CAATGGCGAA TGATGAGAAA GCTTTGTGTT CGCGATATGC TTAGTTGTTC TACTTTAGAT 480 TCTGTTTATG CACTAAGGAA AAAGGAGCTT AGACAATCAA TCAATTACTT TCTATAATAA 107581 ||||||| || |||||||| || ||||||| |||||||| | | |||||| | |||||| ||| TCTGTTTGTG CACTAAGGCG AAGGGAGCTT AGACAATCGA TGAATTAC-T TCTATAGTAA 539 GAAGGGTTTA CCAGTGAATA TTGGTGAACA GATGTTCTTG ACTGTGCTTA ATGTGATGAC 107641 |||||||||| |||||||| ||||||| || |||||||||| |||||| ||| ||||||| || GAAGGGTTTA CCAGTGAACG TTGGTGAGCA GATGTTCTTG ACTGTGTTTA ATGTGATTAC 599 AAGCATGTTA TGGGGTGGCA CAGTCAAGGG TGAGGAAGGA GCTAGCCTCG GAGCTGAGTT 107701 |||||||||| |||||| ||| |||| ||||| ||||||| || |||| || | | || ||||| AAGCATGTTA TGGGGTAGCA CAGTGAAGGG TGAGGAAAGA GCTAATCTTG GGGCAGAGTT 659 TAGGCATGTT GTGACTGAGA TAGCTGCGTT GTGCAGTATT CCCAATCTTT CCGATTTTTA 107761 |||| ||||| |||| ||||| | |||||| | |||||||||| |||||||||| ||||||| || TAGGTATGTT GTGAGTGAGA TGGCTGCGCT GTGCAGTATT CCCAATCTTT CCGATTTCTA 719 CCCAGGCTTG GCTTGGTTTG ATTTCCAGGG TGTTACAAAG AAGATGAAGG TGTTGGCAAA 107821 |||||| ||| || ||||||| |||||||||| |||||||||| ||||||||| || || ||| CCCAGGTTTG GCCTGGTTTG ATTTCCAGGG TGTTACAAAG AAGATGAAGC TGCTGTTAAA 779 GATATTTGAG AGCATAATTG ATCAAAGACA AAAAT 107856 || ||||||| | ||| ||| || | | || GAGATTTGAG AAGATATTTG AT-AGCATGA TTGAT 813 hqPGS_C08HBa0060C12.1+_SGN-E553649+ (107042 107856) ******************************************************************************** EST sequence 96 +strand 772 n (File: SGN-E554337+) 1 CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 61 TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 121 GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 181 GTAATCTCTA TTCTCTTGAT CCCACCTATT TTGCATCTCT TTCCCAAACT TATGGCCCCA 241 TTTGTAGACT CTGGCTTGGT AAAAAAGTTG GGATTATTAT TACTTCACCT ACCTTAGCTC 301 GTGAGGTTCT TAAGGATAAA GACACCATTT TTGCTAACAG AGATGTCCCA GCTGCTGCAA 361 AAGAATTATC ATATGGTGGC AATAGCATAC TTTGGACTCC TTATGGACCG AAATGGAGAA 421 TGTTGAGGAA GGTTTGCGTT CGCAATATGC TTAGTTATTC TACTTTAGAT TCTGTTTATG 481 CACTAAGGAA AAGGGAGCTT AGACAATCGA TCAATTACTT CTACAGTCAG AAGGGTTTAC 541 CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA AGCATGTTAT 601 GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATATTG 661 TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC CCGGGGCTTG 721 GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA GG Predicted gene structure (within gDNA segment 105399 to 110953): Exon 1 107048 107820 ( 773 n); cDNA 1 770 ( 770 n); score: 0.864 MATCH C08HBa0060C12.1+ SGN-E554337+ 0.864 773 1.001 C PGS_C08HBa0060C12.1+_SGN-E554337+ (107048 107820) Alignment (genomic DNA sequence = upper lines): CTCAAATTCT -TCAAAC-C- CCTTTTGGAT TCTTTCCCAT GGCGTCT-TC AAGAACTCAA 107103 |||| ||||| |||||| | |||||| || |||||||||| ||| || || || | ||||| CTCATATTCT CTCAAACGCA CCTTTTTGAA TCTTTCCCAT GGCTCCTTTC AACATCTCAA 60 TCTTGAGCA- AAAGGGTGTG TTTTTCTCCT GTTTTCTTGG GTTTTTAGCT TTACTCTGGT 107162 | |||| | |||| ||| ||||||||| ||||| |||| ||||||||| ||||| |||| TGCTGAGAAT AAAGCTTGTA GTTTTCTCCT GTTTTATTGG TTTTTTAGCT TTACTTTGGT 120 GTTTCATCAG TAACTCAAAC AAGAGATTGC CACCAGGGCC TAAAGCTTTG CCCTTGATAG 107222 |||||||||| |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| GTTTCATCAG TAACTCAAAC AAGGGATTGC CACCAGGGCC TAAACCTTTG CCCTTGATAG 180 ATAATCTTCA TTCTCTTGAT CCTCAACTTC ACACCTATTT TGCATCTCTT TCCCAAACTT 107282 |||||| | ||||||||| | | | ||||||||| |||||||||| |||||||||| GTAATCTCTA TTCTCTTGA- --T---C--C -CACCTATTT TGCATCTCTT TCCCAAACTT 231 ATGGCCCCAT TTGTAGAATC TGGCTTGGTA AAACACTTGG GATTATTATT ACTTCTCCTG 107342 |||||||||| ||||||| || |||||||||| ||| | |||| |||||||||| ||||| ||| ATGGCCCCAT TTGTAGACTC TGGCTTGGTA AAAAAGTTGG GATTATTATT ACTTCACCTA 291 CTTTAGCTCG TGAGGTTCGT AAGGGTAAAG ATACCATTTT TGCTAACAGA GATGTCCCTG 107402 | |||||||| |||||||| | |||| ||||| | |||||||| |||||||||| |||||||| | CCTTAGCTCG TGAGGTTCTT AAGGATAAAG ACACCATTTT TGCTAACAGA GATGTCCCAG 351 CTGCTGGAAG CGAATTTTCA TATGGTGGCA ATAACATACT TTGGACTCCT TATGGGCCGA 107462 |||||| || ||||| ||| |||||||||| ||| |||||| |||||||||| ||||| |||| CTGCTGCAAA AGAATTATCA TATGGTGGCA ATAGCATACT TTGGACTCCT TATGGACCGA 411 AATGGTGCAT GTTGAGGAAA ATTTGTGTTC GCGATATACT TAGTTCTTCT ACTTTAGATT 107522 ||||| | || ||||||||| |||| |||| || |||| || ||||| |||| |||||||||| AATGGAGAAT GTTGAGGAAG GTTTGCGTTC GCAATATGCT TAGTTATTCT ACTTTAGATT 471 CTGTTTATGC ACTAAGGAAA AAGGAGCTTA GACAATCAAT CAATTACTTT CTATAATAAG 107582 |||||||||| |||||||||| | |||||||| ||||||| || ||||||| || ||| | | || CTGTTTATGC ACTAAGGAAA AGGGAGCTTA GACAATCGAT CAATTAC-TT CTACAGTCAG 530 AAGGGTTTAC CAGTGAATAT TGGTGAACAG ATGTTCTTGA CTGTGCTTAA TGTGATGACA 107642 |||||||||| |||| ||| | |||||| ||| |||||||||| | ||||| |||||| ||| AAGGGTTTAC CAGTAAATGT TGGTGAGCAG ATGTTCTTGA GTTCACTTAA TGTGATTACA 590 AGCATGTTAT GGGGTGGCAC AGTCAAGGGT GAGGAAGGAG CTAGCCTCGG AGCTGAGTTT 107702 |||||||||| |||||||||| ||| |||||| |||||| ||| ||| || || |||||||||| AGCATGTTAT GGGGTGGCAC AGTGAAGGGT GAGGAAAGAG CTACTCTTGG AGCTGAGTTT 650 AGGCATGTTG TGACTGAGAT AGCTGCGTTG TGCAGTATTC CCAATCTTTC CGATTTTTAC 107762 |||||| ||| | ||||| || |||||| || |||||||| ||||| ||| |||||||||| AGGCATATTG TCACTGAAAT GGCTGCGCTG GTCAGTATTC CCAATTATTC CGATTTTTAC 710 CC-AGGCTTG GCTTGGTTTG ATTTCCAGGG TGTTACAAAG AAGATG-AAG GTGTTGGCAA 107820 || |||||| || ||||||| ||||||| || |||| |||| |||||| ||| |||||||||| CCGGGGCTTG GCCTGGTTTG ATTTCCAAGG TGTTGCAAAA AAGATGAAAG GTGTTGGCAA 770 hqPGS_C08HBa0060C12.1+_SGN-E554337+ (107048 107820) ******************************************************************************** EST sequence 123 +strand 486 n (File: SGN-E318770+) 1 TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 61 TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 121 TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 181 CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 241 TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 301 TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 361 CTTTTATAAT CAGACAGGAT CGCCTGTGAA TGTTGGTGAA CAGATGTTTT TGACTGCACT 421 TAATGTGATT ACAAGCATGT TATGGGGTGG CACAGTGAAG GGTGAGGAAA GAGCTACTCT 481 TGGGGC Predicted gene structure (within gDNA segment 106303 to 111715): Exon 1 107209 107695 ( 487 n); cDNA 1 486 ( 486 n); score: 0.867 MATCH C08HBa0060C12.1+ SGN-E318770+ 0.867 487 1.002 C PGS_C08HBa0060C12.1+_SGN-E318770+ (107209 107695) Alignment (genomic DNA sequence = upper lines): TTTGCCCTTG ATAGATAATC TTCATTCTCT TGATCCTCAA CTTCACACCT ATTTTGCATC 107268 |||||||||| |||| ||||| | |||||||| ||| |||||| |||||||||| |||| ||||| TTTGCCCTTG ATAGGTAATC TCCATTCTCT TGAACCTCAA CTTCACACCT ATTTCGCATC 60 TCTTTCCCAA ACTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAACAC TTGGGATTAT 107328 ||||||| || | |||||||| |||||||||| |||||||||| ||||||| || |||||||||| TCTTTCCAAA ATTTATGGCC CCATTTGTAG AATCTGGCTT GGTAAAAAAC TTGGGATTAT 120 TATTACTTCT CCTGCTTTAG CTCGTGAGGT TCGTAAGGGT AAAGATACCA TTTTTGCTAA 107388 | ||||||| ||||| |||| |||| ||||| || ||||| | |||||||||| |||||||||| TGTTACTTCC CCTGCCTTAG CTCGCGAGGT TCTTAAGGAT AAAGATACCA TTTTTGCTAA 180 CAGAGATGTC CCTGCTGCTG GAAGCGAATT TTCATATGGT GGCAATAACA TACTTTGGAC 107448 ||||||||| || ||||| | || ||| | | |||||||| || | | ||| || ||||||| CAGAGATGTG AGTGTTGCTG GTAGAGAAGT TACATATGGT GGAACTGACA TAGTTTGGAC 240 TCCTTATGGG CCGAAATGGT GCATGTTGAG GAAAATTTGT GTTCGCGATA TACTTAGTTC 107508 ||||||||| || || ||| | |||||||| ||| ||||| |||| || | | |||| | | TCCTTATGGA CCTAAGTGGC GTATGTTGAG GAAGGTTTGT GTTCAAGAAA TGCTTACTGC 300 TTCTACTTTA GATTCTGTTT ATGCACTAAG GAAAAAGGAG CTTAGACAAT CAATCAATTA 107568 |||||||||| ||| || ||| ||||||| || | || |||| |||||||||| | || ||||| TTCTACTTTA GATACTCTTT ATGCACTGAG GCGAAGGGAG CTTAGACAAT CGATTAATTA 360 CTTTCTATAA TAAGAAGGGT TTACCAGTGA ATATTGGTGA ACAGATGTTC TTGACTGTGC 107628 |||| ||||| | ||| || | || |||| || ||||||| ||||||||| ||||||| | CTTT-TATAA TCAGACAGGA TCGCCTGTGA ATGTTGGTGA ACAGATGTTT TTGACTGCAC 419 TTAATGTGAT GACAAGCATG TTATGGGGTG GCACAGTCAA GGGTGAGGAA GGAGCTAGCC 107688 |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| |||||| | TTAATGTGAT TACAAGCATG TTATGGGGTG GCACAGTGAA GGGTGAGGAA AGAGCTACTC 479 TCGGAGC 107695 | || || TTGGGGC 486 hqPGS_C08HBa0060C12.1+_SGN-E318770+ (107209 107695) ******************************************************************************** EST sequence 32 +strand 722 n (File: SGN-E378935+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAGTA 541 GATACAGTTG TGGGAAAAGA TAACATAGTG GAAGAGTCTC ATATTCAACA GTTACCATAT 601 CTCTATGCAG TGATGAAAGA AGCCATGCGC ATACATCCAG CCCTCCCACT CTTGGCTCCT 661 CATTGTCCTA GTGAGACAAT CACTGTTGGT GGATACACTG TTCCTAAAGG GTCTCGTGTT 721 TT Predicted gene structure (within gDNA segment 106665 to 112044): Exon 1 107552 107973 ( 422 n); cDNA 1 435 ( 435 n); score: 0.841 Intron 1 107974 110992 (3019 n); Pd: 0.992 (s: 0.85), Pa: 0.999 (s: 0.66) Exon 2 110993 111198 ( 206 n); cDNA 436 641 ( 206 n); score: 0.629 MATCH C08HBa0060C12.1+ SGN-E378935+ 0.771 628 0.870 C PGS_C08HBa0060C12.1+_SGN-E378935+ (107552 107973,110993 111198) Alignment (genomic DNA sequence = upper lines): AGACAATCAA TCAATTACTT TCTATAATAA GAAGGGTTTA CCAGTGAATA TTGGTGAACA 107611 |||| ||||| |||||||| | | |||| | | || ||||||| ||||||||| |||||||||| AGACGATCAA TCAATTAC-T TGTATAGTCA GAGGGGTTTA CCAGTGAATG TTGGTGAACA 59 GATGTTCTTG ACTGTGCTTA ATGTGATGAC AAGCATGTTA TGGGGTGGCA CAGTCAAGGG 107671 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| | | ||||| GATGTTCTTG ACTGTGCTTA ATGTGATGAC AAGCATGTTA TGGGGAGGCA CGATGAAGGG 119 TGAGGAAGGA GCTAGCCTCG GAGCTGAGTT TAGGCATGTT GTGACTGAGA TAGCTGCGTT 107731 ||||||| || |||| || | |||||||||| |||||||||| |||||||||| |||||| ||| TGAGGAAAGA GCTACTCTTG GAGCTGAGTT TAGGCATGTT GTGACTGAGA TAGCTGAGTT 179 GTGCAGTATT CCCAATCTTT CCGATTTTTA CCCAGGCTTG GCTTGGTTTG ATTTCCAGGG 107791 | ||||||| |||||||||| | |||||||| ||| |||||| || ||||||| |||||||||| GATCAGTATT CCCAATCTTT CTGATTTTTA CCCGGGCTTG GCCTGGTTTG ATTTCCAGGG 239 TGTTACAAAG AAGATGAAGG TG-T--T--- G-G----CA- AAGATATTTG AGAGCATAAT 107839 ||||| |||| ||||| |||| || | | | | | |||||||||| | ||||| || TGTTATAAAG AAGATTAAGG TGTTGCTAAA GAGATTTGAT AAGATATTTG AAAGCATGAT 299 TGATCAAAGA CAAAAATTGG ACAGAAATGG TGTTGACCAA GAAACCAAAG ACTTTTTGCA 107899 |||||||||| |||||||| | |||||||||| ||||| |||| |||| ||||| |||||||||| TGATCAAAGA CAAAAATTAG ACAGAAATGG TGTTGGCCAA GAAAGCAAAG ACTTTTTGCA 359 AGTTTTGCTA AAGTTGAAAG ATGAAGCAGA TTCCAAAAT- AC-CTGACCA TGACTGAAAT 107957 ||||||||| |||||||||| |||||||||| | ||||||| | ||||||| |||||||||| AGTTTTGCTC AAGTTGAAAG ATGAAGCAGA TGCCAAAATG CCTCTGACCA TGACTGAAAT 419 CAAAGCCTTA CTTATGGTAT GTTTATCAGT TGTGCATTCT ACTAAATTTG CTTTTTCCAA 108017 |||||||||| |||||| CAAAGCCTTA CTTATG.... .......... .......... .......... .......... 435 ATGAATCTAA AGGAAATCTT CCTCTCCCCA ATTCACAAAT TTCAAATTAA TAATAGTCAT 108077 .......... .......... .......... .......... .......... .......... 435 CTCTGCATTA TTAATGAGTA GCCTAGAATC AAGTTTGTAT TTGTCTTCCA CTATTCATAC 108137 .......... .......... .......... .......... .......... .......... 435 TGGCTTACAC TGATCATGAT GGCAGATCTT CTCTTTTTTT TATATTAAAA GGATCAAAAT 108197 .......... .......... .......... .......... .......... .......... 435 CTAATGATAC TGATTGTGGG CTTGTTAATT TATAGAAGAA TATGGGAAAT GAATTTCAGA 108257 .......... .......... .......... .......... .......... .......... 435 AGAATCCGAT TTGTAGAATC ATGTCCTGAG CTGTTGGTTG GGCTCTTCTG CTTGAAAATT 108317 .......... .......... .......... .......... .......... .......... 435 TACTTTCATT ACATGTGGTC CTGGTTACAA AGTTTTTACT TGAAATAGTC CATTTCGTTA 108377 .......... .......... .......... .......... .......... .......... 435 CATGTTAGGT TGTCATAGAT GAAAAATTGG CTTATTTATT ACCATGTTAT TGGACTGCAT 108437 .......... .......... .......... .......... .......... .......... 435 TAAAGAAAGA GTCGGCAAAT TTAGCATCAG ATAATATGTG AAGACTTAAC TCATTCATTC 108497 .......... .......... .......... .......... .......... .......... 435 TTTCGACTGG AAATTGCCTG AAGGAGAGAC ATTAGACCTT ACAGAAAAGT TTGGTATTTT 108557 .......... .......... .......... .......... .......... .......... 435 ATTGAAGAAG AAAATACCTC TGGTGGCTAT ACCTACTCCA AGATTATCCA ATCCAACACT 108617 .......... .......... .......... .......... .......... .......... 435 GTATGAGTAA GATAAAAATG TGTTTGCAGA GTGTCGTGTT CTGTGTGATG AAATTAAGAA 108677 .......... .......... .......... .......... .......... .......... 435 TATAAAACCT ACAATTCAGT GTGCTTGAAT TACCACTAGT TCAGTAGGTC TATTCCAGAG 108737 .......... .......... .......... .......... .......... .......... 435 TCTTGGCAAC ATACAGGCAT GAAGCTCCTG TTTGTAAGAT AAAAATAAGC CCCAATTTCA 108797 .......... .......... .......... .......... .......... .......... 435 TTCTGTAAAT TCAGAACCTT ATGAAAGGCC TGAGCTCTGT TACAGTCATG GTCAGTGATA 108857 .......... .......... .......... .......... .......... .......... 435 ATTATTTACT TAGTGGTCAT ATAACGCGTA AAAATATCAC ATCCTAAAAA ACAATTTTTT 108917 .......... .......... .......... .......... .......... .......... 435 TTTCTTTAAA CCTTAGTTAG ACACATCAGT TCTGCTTTGA AGCTGAAGCA CCAGTAAAGT 108977 .......... .......... .......... .......... .......... .......... 435 TGAGCAGGTA TGTTCTTATT CATCGTGTGG TTCTGCACAC TTTCAATGTT CAGTTTTTTG 109037 .......... .......... .......... .......... .......... .......... 435 TCTTGTCCAA CATATTTTTA TTCTTTAGGA TATTTTATTT TTATATATGG TATTGAAGGA 109097 .......... .......... .......... .......... .......... .......... 435 TTGAGTTTTT CTTGGCAAAA AGGACCTTAT GTATGTTATG TCAATTGTGA CATGTGCATT 109157 .......... .......... .......... .......... .......... .......... 435 TTCTACTATA TAGGACAAGT CACTTTCTTT TGATGTGTTA TTCATTGGTC CCTTCTGTCG 109217 .......... .......... .......... .......... .......... .......... 435 GGAAACGAAG GATAACACAA GGATATTCAT AGTCCAAATA ATGGGGATAA AATGGAAAAA 109277 .......... .......... .......... .......... .......... .......... 435 TAATAACATC AAGAATTTTA CGTGGAAATC TTTGAACAAG GAAAAAAATT ACAAGCCAAG 109337 .......... .......... .......... .......... .......... .......... 435 AAGAGCAGCC GATATCACTA GTTAAACTGA TGTAGAAGTC TTTATTTTTA GAATAAAATA 109397 .......... .......... .......... .......... .......... .......... 435 TGTCCATTTT TTCCACCTTA TTTGTCTGAT TTTGACTTGA TATGAAATTT AAGAACGAAA 109457 .......... .......... .......... .......... .......... .......... 435 CTAACTGGTG TCCTTACAGA TACAAGTATT AGAAGTGCTG AAAGTGTCTT AATACTAAAT 109517 .......... .......... .......... .......... .......... .......... 435 ATGGAACCTT TAAAGGAACT TTTTCTAGCA GCTTTCACCC TTTCAATTGT ATTCCTTACA 109577 .......... .......... .......... .......... .......... .......... 435 ATTCTGTGGT ACAAATTGGC ATCACACAAG AAAGAATCGA GGTTGCCACC AGGACCTCGT 109637 .......... .......... .......... .......... .......... .......... 435 GGTCTTCCGA TTGTGGGATT CTTACAATTC CTCCCGACCA ATTTGCATCA CCAGCTCACG 109697 .......... .......... .......... .......... .......... .......... 435 AAGTTATCTC AACAATATGG TCCAATTTAC AAGTTTTGGC TAGGAAGCAA ACTATGTGTT 109757 .......... .......... .......... .......... .......... .......... 435 GTGTTGAATT CACCATCCTT AGCCAAAGAA GTTGTTTGTG ATCAAGATTC TGTTTTGGCT 109817 .......... .......... .......... .......... .......... .......... 435 AACCATGACC CTCCAATTGC AGGATTAGTA GGTACTATGG TGGACTAGAT ATTGGATTTT 109877 .......... .......... .......... .......... .......... .......... 435 CCCCTTGTGG CTCATACTGG CGTGAGGTGC GCAAACTGTT CCTAAGGGAG ATGCTAAGCA 109937 .......... .......... .......... .......... .......... .......... 435 ACAGGAACCT TGAGGCCTGT TATAGCCTTC GGAGGCACAA GGTCAGAAAG ACAATCAGAA 109997 .......... .......... .......... .......... .......... .......... 435 ATGTGCATAC CAAGATTGGT AACCCTGTTG ACATTGGTGA ATTGGCCTTT CTAGCTGAAA 110057 .......... .......... .......... .......... .......... .......... 435 TAAATGTAGT CATTAGTATT ATCTTTGGCA GCAAATTTGT CGAGAATATG GAGAAGTGTA 110117 .......... .......... .......... .......... .......... .......... 435 GTAAAGATGG AACTGAATTC AGGGAATTGG TGGTGAAATA TGGTCAAGTG ATGGGAAAGC 110177 .......... .......... .......... .......... .......... .......... 435 CTAACATATC AGACTTCTTC CCTGTGCTTG ACTTACAAGG AATACAGAAA GTGATGGGAA 110237 .......... .......... .......... .......... .......... .......... 435 AGCCTAACAT ATCAGACTTC CACCCTGCCA TAAGTGAATG TGTCAAGATG CTTTCGGACC 110297 .......... .......... .......... .......... .......... .......... 435 GAAGAGAGGG TGAAATCCAG AGGAATGAGA AGAAACATCT TATACAGATC CTGTTAGAGC 110357 .......... .......... .......... .......... .......... .......... 435 TAATGGAACA GAAAGACATT GGTATATCAC TGGACTAAGT GAAAATTAAG GCCATCTTGG 110417 .......... .......... .......... .......... .......... .......... 435 TGGTAAGTTA TATCGTTCCT TTATCTTTTC TATATTGATT TATCAGTCCT ACAAACTTTT 110477 .......... .......... .......... .......... .......... .......... 435 TAAGACTACT TTAGCTAATT ATGTGATTTG AACATCTAAG TTAAGAACTC AAATCCATTC 110537 .......... .......... .......... .......... .......... .......... 435 TCCAATCACA TGTTGCTCAC GTATTCAAGC GGTGGAAGCA GTCACTAATG TTTGCATCAG 110597 .......... .......... .......... .......... .......... .......... 435 GATAGGTTGT CTATATTAAA CCCCTTGTAG TGCGGCCCTT CTAATGCGGG ATACTTTATG 110657 .......... .......... .......... .......... .......... .......... 435 CACTAATCTG TCCTGTTATT TATAGTCTTG TAAATATATA CATACTCCTA CTAAACATGA 110717 .......... .......... .......... .......... .......... .......... 435 ATGTCCCCAC ACACACACCG GAGTGGAACC ACAAGAAGTT ACAGGTTTGG CAGAACTAGT 110777 .......... .......... .......... .......... .......... .......... 435 AGCTTTGACC TGAACTATGT ACTTATAGTA AGAAATTCAC TTAATATGTA TAAATAATTT 110837 .......... .......... .......... .......... .......... .......... 435 ATCCAGAACT CCATAAATAA AAAGAGTTGT GTTTCAGAAC TCATAGACTT AAAATTCTGG 110897 .......... .......... .......... .......... .......... .......... 435 ATCCACCTCT GCCTACAGGT AGAACCAAGC ATTACAAAAT TCCTGCTACA AGTAATTTCA 110957 .......... .......... .......... .......... .......... .......... 435 TTTCCCCTAT CTTCATATGT GTTTCTGCAT TGTAGGACAT TGTGATTGGT GGGACTGACA 111017 || | || | ||| || ||||||| .......... .......... .......... .....GATTT GGTTGTCGGT GGAACTGACA 460 CTACAATCAC GACGGTTGAG TGGGTAATGT CTGAGCTTCT GAATAATCCG GAGATAATGT 111077 | || || |||||||| | | ||| |||| || | ||| || || || || || CAACTTCCAA CGCGGTTGAG TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA 520 CAAAGGTGCA GCAGGAA-TC GAAACATGTT GTAGGGATGA ATAACATTGT TGAGGAATCC 111136 ||| | || || ||| | || ||| ||| || || | ||||||| || || || || GAAAAATACA ACAAGAAGTA GATACA-GTT GTGGGAAAAG ATAACATAGT GGAAGAGTCT 579 CATTTACCAA ATATGCATTA TCTTGATGTT GTTTTAAAGG AGACGTTACG TTTACACCCT 111196 ||| | | | | | | || ||| ||| || | || | | | | || |||| || CATATTCAAC AGTTACCATA TCTCTATGCA GTGATGAAAG AAGCCATGCG CATACATCCA 639 GC 111198 || GC 641 hqPGS_C08HBa0060C12.1+_SGN-E378935+ (107552 107973) ******************************************************************************** EST sequence 176 +strand 538 n (File: SGN-E206806+) 1 AGACGATCAA TCAATTACTT GTATAGTCAG AGGGGTTTAC CAGTGAATGT TGGTGAACAG 61 ATGTTCTTGA CTGTGCTTAA TGTGATGACA AGCATGTTAT GGGGAGGCAC GATGAAGGGT 121 GAGGAAAGAG CTACTCTTGG AGCTGAGTTT AGGCATGTTG TGACTGAGAT AGCTGAGTTG 181 ATCAGTATTC CCAATCTTTC TGATTTTTAC CCGGGCTTGG CCTGGTTTGA TTTCCAGGGT 241 GTTATAAAGA AGATTAAGGT GTTGCTAAAG AGATTTGATA AGATATTTGA AAGCATGATT 301 GATCAAAGAC AAAAATTAGA CAGAAATGGT GTTGGCCAAG AAAGCAAAGA CTTTTTGCAA 361 GTTTTGCTCA AGTTGAAAGA TGAAGCAGAT GCCAAAATGC CTCTGACCAT GACTGAAATC 421 AAAGCCTTAC TTATGGATTT GGTTGTCGGT GGAACTGACA CAACTTCCAA CGCGGTTGAG 481 TTTGCCATGG CTGAAATTTT GAACAAACCA GATATCCTGA GAAAAATACA ACAAGAAG Predicted gene structure (within gDNA segment 106665 to 109604): Exon 1 107552 107973 ( 422 n); cDNA 1 435 ( 435 n); score: 0.841 MATCH C08HBa0060C12.1+ SGN-E206806+ 0.841 422 0.784 C PGS_C08HBa0060C12.1+_SGN-E206806+ (107552 107973) Alignment (genomic DNA sequence = upper lines): AGACAATCAA TCAATTACTT TCTATAATAA GAAGGGTTTA CCAGTGAATA TTGGTGAACA 107611 |||| ||||| |||||||| | | |||| | | || ||||||| ||||||||| |||||||||| AGACGATCAA TCAATTAC-T TGTATAGTCA GAGGGGTTTA CCAGTGAATG TTGGTGAACA 59 GATGTTCTTG ACTGTGCTTA ATGTGATGAC AAGCATGTTA TGGGGTGGCA CAGTCAAGGG 107671 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| | | ||||| GATGTTCTTG ACTGTGCTTA ATGTGATGAC AAGCATGTTA TGGGGAGGCA CGATGAAGGG 119 TGAGGAAGGA GCTAGCCTCG GAGCTGAGTT TAGGCATGTT GTGACTGAGA TAGCTGCGTT 107731 ||||||| || |||| || | |||||||||| |||||||||| |||||||||| |||||| ||| TGAGGAAAGA GCTACTCTTG GAGCTGAGTT TAGGCATGTT GTGACTGAGA TAGCTGAGTT 179 GTGCAGTATT CCCAATCTTT CCGATTTTTA CCCAGGCTTG GCTTGGTTTG ATTTCCAGGG 107791 | ||||||| |||||||||| | |||||||| ||| |||||| || ||||||| |||||||||| GATCAGTATT CCCAATCTTT CTGATTTTTA CCCGGGCTTG GCCTGGTTTG ATTTCCAGGG 239 TGTTACAAAG AAGATGAAGG TG-T--T--- G-G----CA- AAGATATTTG AGAGCATAAT 107839 ||||| |||| ||||| |||| || | | | | | |||||||||| | ||||| || TGTTATAAAG AAGATTAAGG TGTTGCTAAA GAGATTTGAT AAGATATTTG AAAGCATGAT 299 TGATCAAAGA CAAAAATTGG ACAGAAATGG TGTTGACCAA GAAACCAAAG ACTTTTTGCA 107899 |||||||||| |||||||| | |||||||||| ||||| |||| |||| ||||| |||||||||| TGATCAAAGA CAAAAATTAG ACAGAAATGG TGTTGGCCAA GAAAGCAAAG ACTTTTTGCA 359 AGTTTTGCTA AAGTTGAAAG ATGAAGCAGA TTCCAAAAT- AC-CTGACCA TGACTGAAAT 107957 ||||||||| |||||||||| |||||||||| | ||||||| | ||||||| |||||||||| AGTTTTGCTC AAGTTGAAAG ATGAAGCAGA TGCCAAAATG CCTCTGACCA TGACTGAAAT 419 CAAAGCCTTA CTTATG 107973 |||||||||| |||||| CAAAGCCTTA CTTATG 435 hqPGS_C08HBa0060C12.1+_SGN-E206806+ (107552 107973) ******************************************************************************** EST sequence 333 -strand 728 n (File: SGN-E378974-) 1 CCAAAATGCC TCTGACCATG ACTGAAATCA AAGCCTTACT TATGGATTTG GTTGTCGGTG 61 GAACTGACAC AACTTCCAAC GCGGTTGAGT TTGCCATGGC TGAAATTTTG AACAAACCAG 121 ATATCCTGAG AAAAATACAA CAAGAAGTAG ATACAGTTGT GGGAAAAGAT AACATAGTGG 181 AAGAGTCTCA TATTCAACAG TTACCATATC TCTATGCAGT GATGAAAGAA GCCATGCGCA 241 TACATCCAGC CCTCCCACTC TTGGCTCCTC ATTGTCCTAG TGAGACAATC ACTGTTGGTG 301 GATACACTGT TCCTAAAGGG TCTCGTGTTT TTGTAAATGT ATGGGCTATA CACAGAGATC 361 CTTCTATGTG GAAAAATCCA ACAGAGTTCT GTCCAGAGAG ATTTTTGGAT AATAAATGGA 421 ATTATAGTGG AAATGATTTC AACTATTTCC CATTTGGTTC TGGCAGAAGA ATGTGTGCGG 481 GGATAGCCAT GGCAGAGAGG ATGTTCATGT ATTCACTGGC TTCACTCATT CATTCTTTCG 541 ATTGGAAATT GCCTGAAGGA GAGACGTTAG ACCTTAAAGA GAAGTTTTGT ATTGCTTTGA 601 AGAAGAAAAT GCCTCTGGTG GCTATACCTA CTCCAAGATT GTCCAATCCA ACACAGTATG 661 AGTAAGATAA AAATGTATCA CTGTTATGTG CTAATGTCTT TCAAAGACAA ATGATTTGAA 721 CATTGAAT Predicted gene structure (within gDNA segment 106621 to 109758): Exon 1 108482 108638 ( 157 n); cDNA 520 676 ( 157 n); score: 0.924 MATCH C08HBa0060C12.1+ SGN-E378974- 0.924 157 0.216 C PGS_C08HBa0060C12.1+_SGN-E378974- (108482 108638) Alignment (genomic DNA sequence = upper lines): CTTAACTCAT TCATTCTTTC GACTGGAAAT TGCCTGAAGG AGAGACATTA GACCTTACAG 108541 ||| |||||| |||||||||| || ||||||| |||||||||| |||||| ||| ||||||| || CTTCACTCAT TCATTCTTTC GATTGGAAAT TGCCTGAAGG AGAGACGTTA GACCTTAAAG 579 AAAAGTTTGG TATTTTATTG AAGAAGAAAA TACCTCTGGT GGCTATACCT ACTCCAAGAT 108601 | |||||| | |||| ||| |||||||||| | |||||||| |||||||||| |||||||||| AGAAGTTTTG TATTGCTTTG AAGAAGAAAA TGCCTCTGGT GGCTATACCT ACTCCAAGAT 639 TATCCAATCC AACACTGTAT GAGTAAGATA AAAATGT 108638 | |||||||| ||||| |||| |||||||||| ||||||| TGTCCAATCC AACACAGTAT GAGTAAGATA AAAATGT 676 hqPGS_C08HBa0060C12.1+_SGN-E378974- (108482 108638) ******************************************************************************** EST sequence 194 +strand 587 n (File: SGN-E267100+) 1 CTGTTATAGC CTTCGGAGAC AGGAGGTCAG AAAGACAATC AAAAATGTGC ATACCAAGAT 61 TGGCAGCCTC ACTGATATTG GTGAATTAGC CTTTGTAACT GAAATGAATG TAATTATGAG 121 TATGATCTTT GGCAGCAATT TTGTAGAGGA GATGGAGAAG CATGGAACTG AATTTAGGGA 181 ATTAGTGATA AAATATCCTC AAATACTGGG AAGGCCAAAC ATATCAGACT TCTTCCCCAT 241 GCTTGCGAGG TTTGATTTAC AAGGAATACA GAAAGACGCG GAGGCTCTTT TGAAGTCGGT 301 TGAAAGTATA TTGGACCCTG CCATAAATGA ACACTTGAAG ATGCTTTCAG ACAGAAGAGA 361 AGGTGAAATC CAGGGGAATG AGAAGAAAGA CTTTATACAG ATCCTGTTAG AGCTGATGGA 421 GCAGAAAGAC ATTGGTATAT CACTAGACTT GGTGAAAATA AAGGCTATCT TGGTGGACAT 481 TGTTATAGGT GGGACTGACT CTACAATCAC AACGATCGAG TGGGTAATGA CAGAGCTTCT 541 GAATAATCCA GAGACAATGT CAAAGGTGCA GCAGGAATTG AAACATG Predicted gene structure (within gDNA segment 109354 to 111795): Exon 1 109954 110419 ( 466 n); cDNA 1 475 ( 475 n); score: 0.732 Intron 1 110420 110992 ( 573 n); Pd: 0.999 (s: 0.90), Pa: 0.999 (s: 0.88) Exon 2 110993 111104 ( 112 n); cDNA 476 587 ( 112 n); score: 0.902 MATCH C08HBa0060C12.1+ SGN-E267100+ 0.765 578 0.985 C PGS_C08HBa0060C12.1+_SGN-E267100+ (109954 110419,110993 111104) Alignment (genomic DNA sequence = upper lines): CTGTTATAGC CTTCGGAGGC ACAAGGTCAG AAAGACAATC AGAAATGTGC ATACCAAGAT 110013 |||||||||| |||||||| | | ||||||| |||||||||| | |||||||| |||||||||| CTGTTATAGC CTTCGGAGAC AGGAGGTCAG AAAGACAATC AAAAATGTGC ATACCAAGAT 60 TGGTAACCCT GTTGACATTG GTGAATTGGC CTTTCTAGCT GAAATAAATG TAGTCATTAG 110073 ||| | || ||| |||| ||||||| || |||| || || ||||| |||| || | || || TGGCAGCCTC ACTGATATTG GTGAATTAGC CTTTGTAACT GAAATGAATG TAATTATGAG 120 TATTATCTTT GGCAGCAAAT TTGTCGAGAA TATGGAGAAG TGTAGTAAAG ATGGAACTGA 110133 ||| |||||| |||||||| | |||| || | |||| | || || || |||||||||| TATGATCTTT GGCAGCAATT TTGT--AG-- -A-GGAG-A- TGGAG-AAGC ATGGAACTGA 171 ATTCAGGGAA TTGGTGGTGA AATATGGTCA AGTGATGGGA AAGCCTAACA TATCAGACTT 110193 ||| |||||| || ||| | | ||||| ||| | | ||||| | ||| |||| |||||||||| ATTTAGGGAA TTAGTGATAA AATATCCTCA AATACTGGGA AGGCCAAACA TATCAGACTT 231 CTT-CCC-TG --TGC----- TTGACTTACA AGGAATACAG AAAG-TGATG -GGAAAGCCT 110242 ||| ||| || ||| |||| ||||| |||||||||| |||| | | || | CTTCCCCATG CTTGCGAGGT TTGATTTACA AGGAATACAG AAAGACGCGG AGGCTCTTTT 291 -AA--C-ATA -TCAG-A-CT TCCACCCTGC CATAAGTGAA TGTGTCAAGA TGCTTTCGGA 110295 || | | || | | | ||||||| ||||| |||| | |||| ||||||| || GAAGTCGGTT GAAAGTATAT TGGACCCTGC CATAAATGAA CACTTGAAGA TGCTTTCAGA 351 CCGAAGAGAG GGTGAAATCC AGAGGAATGA GAAGAAACAT CTTATACAGA TCCTGTTAGA 110355 | ||||||| |||||||||| || ||||||| ||||||| | ||||||||| |||||||||| CAGAAGAGAA GGTGAAATCC AGGGGAATGA GAAGAAAGAC TTTATACAGA TCCTGTTAGA 411 GCTAATGGAA CAGAAAGACA TTGGTATATC ACTGGACTAA GTGAAAATTA AGGCCATCTT 110415 ||| ||||| |||||||||| |||||||||| ||| |||| |||||||| | |||| ||||| GCTGATGGAG CAGAAAGACA TTGGTATATC ACTAGACTTG GTGAAAATAA AGGCTATCTT 471 GGTGGTAAGT TATATCGTTC CTTTATCTTT TCTATATTGA TTTATCAGTC CTACAAACTT 110475 |||| GGTG...... .......... .......... .......... .......... .......... 475 TTTAAGACTA CTTTAGCTAA TTATGTGATT TGAACATCTA AGTTAAGAAC TCAAATCCAT 110535 .......... .......... .......... .......... .......... .......... 475 TCTCCAATCA CATGTTGCTC ACGTATTCAA GCGGTGGAAG CAGTCACTAA TGTTTGCATC 110595 .......... .......... .......... .......... .......... .......... 475 AGGATAGGTT GTCTATATTA AACCCCTTGT AGTGCGGCCC TTCTAATGCG GGATACTTTA 110655 .......... .......... .......... .......... .......... .......... 475 TGCACTAATC TGTCCTGTTA TTTATAGTCT TGTAAATATA TACATACTCC TACTAAACAT 110715 .......... .......... .......... .......... .......... .......... 475 GAATGTCCCC ACACACACAC CGGAGTGGAA CCACAAGAAG TTACAGGTTT GGCAGAACTA 110775 .......... .......... .......... .......... .......... .......... 475 GTAGCTTTGA CCTGAACTAT GTACTTATAG TAAGAAATTC ACTTAATATG TATAAATAAT 110835 .......... .......... .......... .......... .......... .......... 475 TTATCCAGAA CTCCATAAAT AAAAAGAGTT GTGTTTCAGA ACTCATAGAC TTAAAATTCT 110895 .......... .......... .......... .......... .......... .......... 475 GGATCCACCT CTGCCTACAG GTAGAACCAA GCATTACAAA ATTCCTGCTA CAAGTAATTT 110955 .......... .......... .......... .......... .......... .......... 475 CATTTCCCCT ATCTTCATAT GTGTTTCTGC ATTGTAGGAC ATTGTGATTG GTGGGACTGA 111015 ||| ||||| || | |||||||||| .......... .......... .......... .......GAC ATTGTTATAG GTGGGACTGA 498 CACTACAATC ACGACGGTTG AGTGGGTAAT GTCTGAGCTT CTGAATAATC CGGAGATAAT 111075 | |||||||| || ||| | | |||||||||| | | |||||| |||||||||| | |||| ||| CTCTACAATC ACAACGATCG AGTGGGTAAT GACAGAGCTT CTGAATAATC CAGAGACAAT 558 GTCAAAGGTG CAGCAGGAAT CGAAACATG 111104 |||||||||| |||||||||| |||||||| GTCAAAGGTG CAGCAGGAAT TGAAACATG 587 hqPGS_C08HBa0060C12.1+_SGN-E267100+ (109954 110419,110993 111104) ******************************************************************************** EST sequence 116 +strand 686 n (File: SGN-E391592+) 1 CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 61 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 121 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 181 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 241 CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 301 CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 361 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 421 AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATCAAAAAT GTGCATACCA 481 AGATTGGCAG CCTCACTGAT ATTGGTGAAT TAGCCTTTGT AACTGAAATG AATGTAATTA 541 TGAGTATGAT CTTTGGCAGC AATTTTGTAG AGGAGATGGA GAAGCATGGA ACTGAATTTA 601 GGGAATTAGT GATAAAATAT CCTCAAATAC TGGGAAGGCC AAACATATCA GACTTCTTCC 661 CCATGCTTGC GAGGTTTGAT TTACAA Predicted gene structure (within gDNA segment 107941 to 112616): Exon 1 109525 110223 ( 699 n); cDNA 1 685 ( 685 n); score: 0.832 MATCH C08HBa0060C12.1+ SGN-E391592+ 0.832 699 1.019 C PGS_C08HBa0060C12.1+_SGN-E391592+ (109525 110223) Alignment (genomic DNA sequence = upper lines): CTTTAAAGGA ACTTTTTCTA GCAGCTTTCA CCCTTTCAAT TGTATTCCTT ACAATTCTGT 109584 ||||||| || || | | ||||| ||| | ||||||| ||| |||||| |||||||| | CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 60 GGTACAAATT GGCATCACAC AAGAAAGAAT CGAGGTTGCC ACCAGGACCT CGTGGTCTTC 109644 |||||||||| | | || ||| |||| | | ||||| |||||| ||| ||||| |||| GGTACAAATT -G----A-AC AAGGTGGAAT CCAACTTGCC ACCAGGGCCT CGTGGCCTTC 114 CGATTGTGGG ATTCTTACAA TTCCTCCCGA CCAATTTGCA TCACCAGCTC ACGAAGTTAT 109704 |||||||||| |||||||| | ||||||| |||||||||| |||||||||| || |||| | CGATTGTGGG ATTCTTACCA TTCCTCCGCG CCAATTTGCA TCACCAGCTC ACAGAGTTGT 174 CTCAACAATA TGGTCCAATT TACAAGTTTT GGCTAGGAAG CAAACTATGT GTTGTGTTGA 109764 ||||||| || ||||||||| |||||||||| |||||||| | ||||||||| |||||||||| CTCAACAGTA TGGTCCAATA TACAAGTTTT GGCTAGGAGG AAAACTATGT GTTGTGTTGA 234 ATTCACCATC CTTAGCCAAA GAAGTTGTTT GTGATCAAGA TTCTGTTTTG GCTAACCATG 109824 |||||||||| |||||||||| ||||||||| | |||||||| || |||| || |||| || ATTCACCATC CTTAGCCAAA GAAGTTGTTC GCGATCAAGA CTCCATTTTT GCCAACCGTG 294 ACCCTCCAAT TGCAGGATTA GTAGGTAC-T ATGGTGGACT AGATATTGGA TTTTCCCCTT 109883 |||||||||| |||||||||| || | || | |||||||||| |||||||||| ||||| || | ACCCTCCAAT TGCAGGATTA GTGGCCACAT ATGGTGGACT AGATATTGGA TTTTCTCCCT 354 GTGGCTCATA CTGGCGTGAG GTGCGCAAAC TGTTCCTAAG GGAGATGCTA AGCAACAGGA 109943 |||||| || ||||||||| ||||||||| |||| |||| |||||||||| |||||||||| ATGGCTCCTA CTGGCGTGAT ATGCGCAAAC TGTTTGTAAG GGAGATGCTA AGCAACAGGA 414 ACCTTGAGGC CTGTTATAGC CTTCGGAGGC ACAAGGTCAG AAAGACAATC AGAAATGTGC 110003 ||||||| | |||||||||| |||||||| | | ||||||| |||||||||| | |||||||| ACCTTGAATC CTGTTATAGC CTTCGGAGAC AGGAGGTCAG AAAGACAATC AAAAATGTGC 474 ATACCAAGAT TGGTAACCCT GTTGACATTG GTGAATTGGC CTTTCTAGCT GAAATAAATG 110063 |||||||||| ||| | || ||| |||| ||||||| || |||| || || ||||| |||| ATACCAAGAT TGGCAGCCTC ACTGATATTG GTGAATTAGC CTTTGTAACT GAAATGAATG 534 TAGTCATTAG TATTATCTTT GGCAGCAAAT TTGTCGAGAA TATGGAGAAG TGTAGTAAAG 110123 || | || || ||| |||||| |||||||| | |||| || | |||| | || || || TAATTATGAG TATGATCTTT GGCAGCAATT TTGT--AG-- -A-GGAG-A- TGGAG-AAGC 585 ATGGAACTGA ATTCAGGGAA TTGGTGGTGA AATATGGTCA AGTGATGGGA AAGCCTAACA 110183 |||||||||| ||| |||||| || ||| | | ||||| ||| | | ||||| | ||| |||| ATGGAACTGA ATTTAGGGAA TTAGTGATAA AATATCCTCA AATACTGGGA AGGCCAAACA 645 TATCAGACTT CTTCCCTGTG CTTGACTTAC AAGGAATACA 110223 |||||||||| |||||| || |||| | |||| TATCAGACTT CTTCCCCATG CTTGCGAGGT TTGATTTACA 685 hqPGS_C08HBa0060C12.1+_SGN-E391592+ (109525 110223) ******************************************************************************** EST sequence 162 +strand 536 n (File: SGN-E392906+) 1 CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 61 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 121 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 181 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 241 CATCCTTAGC AAAAGAAGTT GTTCGCGATC AAAACTCCAT TTTTGCCAAC CGTGACCCTC 301 CAATTGCAGG ATTAATGGCC ACATATGGTG GACTATATAT TGGATTTTCT CCCTATGGCT 361 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 421 AATCCTGTTA AAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATTCAAAAA ATGTGCATAC 481 CAAGATTGGC AGACTCACTG ATATTGGTGA ATTAACCTTT GTAATTGAAA TGAAAT Predicted gene structure (within gDNA segment 107941 to 111096): Exon 1 109525 110061 ( 537 n); cDNA 1 534 ( 534 n); score: 0.833 MATCH C08HBa0060C12.1+ SGN-E392906+ 0.833 537 1.002 C PGS_C08HBa0060C12.1+_SGN-E392906+ (109525 110061) Alignment (genomic DNA sequence = upper lines): CTTTAAAGGA ACTTTTTCTA GCAGCTTTCA CCCTTTCAAT TGTATTCCTT ACAATTCTGT 109584 ||||||| || || | | ||||| ||| | ||||||| ||| |||||| |||||||| | CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 60 GGTACAAATT GGCATCACAC AAGAAAGAAT CGAGGTTGCC ACCAGGACCT CGTGGTCTTC 109644 |||||||||| | | || ||| |||| | | ||||| |||||| ||| ||||| |||| GGTACAAATT -G----A-AC AAGGTGGAAT CCAACTTGCC ACCAGGGCCT CGTGGCCTTC 114 CGATTGTGGG ATTCTTACAA TTCCTCCCGA CCAATTTGCA TCACCAGCTC ACGAAGTTAT 109704 |||||||||| |||||||| | ||||||| |||||||||| |||||||||| || |||| | CGATTGTGGG ATTCTTACCA TTCCTCCGCG CCAATTTGCA TCACCAGCTC ACAGAGTTGT 174 CTCAACAATA TGGTCCAATT TACAAGTTTT GGCTAGGAAG CAAACTATGT GTTGTGTTGA 109764 ||||||| || ||||||||| |||||||||| |||||||| | ||||||||| |||||||||| CTCAACAGTA TGGTCCAATA TACAAGTTTT GGCTAGGAGG AAAACTATGT GTTGTGTTGA 234 ATTCACCATC CTTAGCCAAA GAAGTTGTTT GTGATCAAGA TTCTGTTTTG GCTAACCATG 109824 |||||||||| |||||| ||| ||||||||| | |||||| | || |||| || |||| || ATTCACCATC CTTAGCAAAA GAAGTTGTTC GCGATCAAAA CTCCATTTTT GCCAACCGTG 294 ACCCTCCAAT TGCAGGATTA GTAGGTAC-T ATGGTGGACT AGATATTGGA TTTTCCCCTT 109883 |||||||||| |||||||||| | | || | |||||||||| | |||||||| ||||| || | ACCCTCCAAT TGCAGGATTA ATGGCCACAT ATGGTGGACT ATATATTGGA TTTTCTCCCT 354 GTGGCTCATA CTGGCGTGAG GTGCGCAAAC TGTTCCTAAG GGAGATGCTA AGCAACAGGA 109943 |||||| || ||||||||| ||||||||| |||| |||| |||||||||| |||||||||| ATGGCTCCTA CTGGCGTGAT ATGCGCAAAC TGTTTGTAAG GGAGATGCTA AGCAACAGGA 414 ACCTTGAGGC CTGTTATAGC CTTCGGAGGC ACAAGGTCAG AAAGACAA-T C-AGAAATGT 110001 ||||||| | |||||| ||| |||||||| | | ||||||| |||||||| | | | |||||| ACCTTGAATC CTGTTAAAGC CTTCGGAGAC AGGAGGTCAG AAAGACAATT CAAAAAATGT 474 GCATACCAAG ATTGGTAACC CTGTTGACAT TGGTGAATTG GCCTTTCTAG CTGAAATAAA 110061 |||||||||| ||||| | | ||| || ||||||||| ||||| || |||||| || GCATACCAAG ATTGGCAGAC TCACTGATAT TGGTGAATTA ACCTTTGTAA TTGAAATGAA 534 hqPGS_C08HBa0060C12.1+_SGN-E392906+ (109525 110061) ******************************************************************************** EST sequence 114 +strand 478 n (File: SGN-E391464+) 1 CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 61 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 121 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 181 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 241 CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 301 CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 361 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 421 AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAAAC AATCAAAAAT GTGCATAC Predicted gene structure (within gDNA segment 107941 to 110941): Exon 1 109525 110007 ( 483 n); cDNA 1 478 ( 478 n); score: 0.862 MATCH C08HBa0060C12.1+ SGN-E391464+ 0.862 483 1.010 C PGS_C08HBa0060C12.1+_SGN-E391464+ (109525 110007) Alignment (genomic DNA sequence = upper lines): CTTTAAAGGA ACTTTTTCTA GCAGCTTTCA CCCTTTCAAT TGTATTCCTT ACAATTCTGT 109584 ||||||| || || | | ||||| ||| | ||||||| ||| |||||| |||||||| | CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 60 GGTACAAATT GGCATCACAC AAGAAAGAAT CGAGGTTGCC ACCAGGACCT CGTGGTCTTC 109644 |||||||||| | | || ||| |||| | | ||||| |||||| ||| ||||| |||| GGTACAAATT -G----A-AC AAGGTGGAAT CCAACTTGCC ACCAGGGCCT CGTGGCCTTC 114 CGATTGTGGG ATTCTTACAA TTCCTCCCGA CCAATTTGCA TCACCAGCTC ACGAAGTTAT 109704 |||||||||| |||||||| | ||||||| |||||||||| |||||||||| || |||| | CGATTGTGGG ATTCTTACCA TTCCTCCGCG CCAATTTGCA TCACCAGCTC ACAGAGTTGT 174 CTCAACAATA TGGTCCAATT TACAAGTTTT GGCTAGGAAG CAAACTATGT GTTGTGTTGA 109764 ||||||| || ||||||||| |||||||||| |||||||| | ||||||||| |||||||||| CTCAACAGTA TGGTCCAATA TACAAGTTTT GGCTAGGAGG AAAACTATGT GTTGTGTTGA 234 ATTCACCATC CTTAGCCAAA GAAGTTGTTT GTGATCAAGA TTCTGTTTTG GCTAACCATG 109824 |||||||||| |||||||||| ||||||||| | |||||||| || |||| || |||| || ATTCACCATC CTTAGCCAAA GAAGTTGTTC GCGATCAAGA CTCCATTTTT GCCAACCGTG 294 ACCCTCCAAT TGCAGGATTA GTAGGTAC-T ATGGTGGACT AGATATTGGA TTTTCCCCTT 109883 |||||||||| |||||||||| || | || | |||||||||| |||||||||| ||||| || | ACCCTCCAAT TGCAGGATTA GTGGCCACAT ATGGTGGACT AGATATTGGA TTTTCTCCCT 354 GTGGCTCATA CTGGCGTGAG GTGCGCAAAC TGTTCCTAAG GGAGATGCTA AGCAACAGGA 109943 |||||| || ||||||||| ||||||||| |||| |||| |||||||||| |||||||||| ATGGCTCCTA CTGGCGTGAT ATGCGCAAAC TGTTTGTAAG GGAGATGCTA AGCAACAGGA 414 ACCTTGAGGC CTGTTATAGC CTTCGGAGGC ACAAGGTCAG AAAGACAATC AGAAATGTGC 110003 ||||||| | |||||||||| |||||||| | | ||||||| ||| |||||| | |||||||| ACCTTGAATC CTGTTATAGC CTTCGGAGAC AGGAGGTCAG AAAAACAATC AAAAATGTGC 474 ATAC 110007 |||| ATAC 478 hqPGS_C08HBa0060C12.1+_SGN-E391464+ (109525 110007) ******************************************************************************** EST sequence 79 +strand 503 n (File: SGN-E205199+) 1 TTTAAATGAT CTATGGATTG CAGCCCTCAC TGTTTCAATT GTGTTCCTTA CAATTCTTTG 61 GTACAAATTG AACAAGGTGG AATCCAACTT GCCACCAGGG CCTCGTGGCC TTCCGATTGT 121 GGGATTCTTA CCATTCCTCC GCGCCAATTT GCATCACCAG CTTACAGAGT TGTCTCAACA 181 GTATGGTCCA ATATACAAGT TTTGGCTAGG AGGAAAACTA TGTGTTGTGT TGAATTCACC 241 ATCCTTAGCC AAAGAAGTTG TTCGCGATCA AGACTCCATT TTTGCCAACC GTGACCCTCC 301 AATTGCAGGA TTAGTGGCCA CATATGGTGG ACTAGATATT GGATTTTCTC CCTATGGCTC 361 CTACTGGCGT GATATGCGCA AACTGTTTGT AAGGGAGATG CTAAGCAACA GGAACCTTGA 421 ATCCTGTTAT AGCCTTCGGA GACAGGAGGT CAGAAAGACA ATCAAAAATG TGCATACCAA 481 GATTTGGAGC CTCACTGATA TTG Predicted gene structure (within gDNA segment 107951 to 110814): Exon 1 109526 110033 ( 508 n); cDNA 1 503 ( 503 n); score: 0.853 MATCH C08HBa0060C12.1+ SGN-E205199+ 0.853 508 1.010 C PGS_C08HBa0060C12.1+_SGN-E205199+ (109526 110033) Alignment (genomic DNA sequence = upper lines): TTTAAAGGAA CTTTTTCTAG CAGCTTTCAC CCTTTCAATT GTATTCCTTA CAATTCTGTG 109585 |||||| || || | | | |||| |||| |||||||| || ||||||| ||||||| || TTTAAATGAT CTATGGATTG CAGCCCTCAC TGTTTCAATT GTGTTCCTTA CAATTCTTTG 60 GTACAAATTG GCATCACACA AGAAAGAATC GAGGTTGCCA CCAGGACCTC GTGGTCTTCC 109645 ||||||||| | | ||| || ||||| | |||||| ||||| |||| |||| ||||| GTACAAATT- G----A-ACA AGGTGGAATC CAACTTGCCA CCAGGGCCTC GTGGCCTTCC 114 GATTGTGGGA TTCTTACAAT TCCTCCCGAC CAATTTGCAT CACCAGCTCA CGAAGTTATC 109705 |||||||||| ||||||| || |||||| | |||||||||| |||||||| | | |||| || GATTGTGGGA TTCTTACCAT TCCTCCGCGC CAATTTGCAT CACCAGCTTA CAGAGTTGTC 174 TCAACAATAT GGTCCAATTT ACAAGTTTTG GCTAGGAAGC AAACTATGTG TTGTGTTGAA 109765 |||||| ||| |||||||| | |||||||||| ||||||| | |||||||||| |||||||||| TCAACAGTAT GGTCCAATAT ACAAGTTTTG GCTAGGAGGA AAACTATGTG TTGTGTTGAA 234 TTCACCATCC TTAGCCAAAG AAGTTGTTTG TGATCAAGAT TCTGTTTTGG CTAACCATGA 109825 |||||||||| |||||||||| |||||||| | |||||||| || |||| | | |||| ||| TTCACCATCC TTAGCCAAAG AAGTTGTTCG CGATCAAGAC TCCATTTTTG CCAACCGTGA 294 CCCTCCAATT GCAGGATTAG TAGGTAC-TA TGGTGGACTA GATATTGGAT TTTCCCCTTG 109884 |||||||||| |||||||||| | | || || |||||||||| |||||||||| |||| || | CCCTCCAATT GCAGGATTAG TGGCCACATA TGGTGGACTA GATATTGGAT TTTCTCCCTA 354 TGGCTCATAC TGGCGTGAGG TGCGCAAACT GTTCCTAAGG GAGATGCTAA GCAACAGGAA 109944 |||||| ||| |||||||| |||||||||| ||| ||||| |||||||||| |||||||||| TGGCTCCTAC TGGCGTGATA TGCGCAAACT GTTTGTAAGG GAGATGCTAA GCAACAGGAA 414 CCTTGAGGCC TGTTATAGCC TTCGGAGGCA CAAGGTCAGA AAGACAATCA GAAATGTGCA 110004 |||||| || |||||||||| ||||||| || |||||||| |||||||||| ||||||||| CCTTGAATCC TGTTATAGCC TTCGGAGACA GGAGGTCAGA AAGACAATCA AAAATGTGCA 474 TACCAAGATT GGTAACCCTG TTGACATTG 110033 |||||||||| | | || ||| |||| TACCAAGATT TGGAGCCTCA CTGATATTG 503 hqPGS_C08HBa0060C12.1+_SGN-E205199+ (109526 110033) ******************************************************************************** EST sequence 75 +strand 732 n (File: SGN-E317264+) 1 AGAACTAGTC TCGAGTTTTT TTTTTTTTTT TTGTGGTTTT AACTTAAAGT TATATCAAAT 61 ATATTAAAAT GTCTTTTAAT CTTGTGATTT TAAATATGTC ACGTGAAAAA TTAAAATTAA 121 AATATTATAA AAGAAAAAAA AAATTAAACA AACTGAAAAA AAATAGAATT AACGGAGAGA 181 GTATATATCA AAGTTATTGG ACAAAATTTT GATGAGCTAA TGCTTAACAA TTAACACAAG 241 AACAAGTTTT TAATTATTCT TTCATGAAGC ACTGTTATAT ATACATGTAT ATATATACAT 301 AGACATTATT CTTATAAGAT TGATGTATAA ATAGGTGAAA AATAAGTACA AAATTAGTAC 361 ATAACTCTCT AAGTTCTCAC CGACTCCTTT CATATCGTAT TAAAATTTAA GAGTCTTCAT 421 CATCTACTTT TACTATAGAA TAAAAATGAT AGCCTAATAA TCTTGCTAGG GGTTTTATGA 481 GATAAAAAAG TTTAATTTAT ATAAATAGAA AAGAAGGAAT GTCCAAAGAT ATCTTAAAGT 541 TTTAGTTTAA ATATTTAGAA GGTATGAATA TGAAAAGATG AGAGTATGAA TATTAAGAGT 601 ATTAAAGTTT AATAAGTAAT CAGAAAATAA TAATAAATAA ATGAACAATA TGAAAAAGAA 661 ATTAAAGTTA CCAAACCACG TAGAAAGAAC AACTAAAGTT CTTATCATGT AATTGAGCAT 721 TAATTGATTA AA Predicted gene structure (within gDNA segment 109059 to 114853): Exon 1 110670 110698 ( 29 n); cDNA 272 298 ( 27 n); score: 0.828 Intron 1 110699 112638 (1940 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 112639 113065 ( 427 n); cDNA 299 724 ( 426 n); score: 0.905 PPA cDNA 34 16 MATCH C08HBa0060C12.1+ SGN-E317264+ 0.905 456 0.623 C PGS_C08HBa0060C12.1+_SGN-E317264+ (110670 110698,112639 113065) Alignment (genomic DNA sequence = upper lines): CTGTTATTTA TAGTCTTGTA AATATATACA TACTCCTACT AAACATGAAT GTCCCCACAC 110729 ||||||| || || | |||| |||||||| CTGTTATATA TA--CATGTA TATATATAC. .......... .......... .......... 298 ACACACCGGA GTGGAACCAC AAGAAGTTAC AGGTTTGGCA GAACTAGTAG CTTTGACCTG 110789 .......... .......... .......... .......... .......... .......... 298 AACTATGTAC TTATAGTAAG AAATTCACTT AATATGTATA AATAATTTAT CCAGAACTCC 110849 .......... .......... .......... .......... .......... .......... 298 ATAAATAAAA AGAGTTGTGT TTCAGAACTC ATAGACTTAA AATTCTGGAT CCACCTCTGC 110909 .......... .......... .......... .......... .......... .......... 298 CTACAGGTAG AACCAAGCAT TACAAAATTC CTGCTACAAG TAATTTCATT TCCCCTATCT 110969 .......... .......... .......... .......... .......... .......... 298 TCATATGTGT TTCTGCATTG TAGGACATTG TGATTGGTGG GACTGACACT ACAATCACGA 111029 .......... .......... .......... .......... .......... .......... 298 CGGTTGAGTG GGTAATGTCT GAGCTTCTGA ATAATCCGGA GATAATGTCA AAGGTGCAGC 111089 .......... .......... .......... .......... .......... .......... 298 AGGAATCGAA ACATGTTGTA GGGATGAATA ACATTGTTGA GGAATCCCAT TTACCAAATA 111149 .......... .......... .......... .......... .......... .......... 298 TGCATTATCT TGATGTTGTT TTAAAGGAGA CGTTACGTTT ACACCCTGCA TTACCATTAC 111209 .......... .......... .......... .......... .......... .......... 298 TTCTCCCAAA GCGCCCGAGC CAATCTGCAA TAGTAGGTGG ATACAAAATA CCTGAAGGAA 111269 .......... .......... .......... .......... .......... .......... 298 CTAAAGTATT CTTGAATGTT TATGCAATTC ATAGGGATCC TCAAGTGTGG GAAAGTCCAC 111329 .......... .......... .......... .......... .......... .......... 298 TAGAGTTCCA ACCTGAAAGG TTCTTGAGTC CCTCGACAAA TTTAGACTAT GCTGGAAATA 111389 .......... .......... .......... .......... .......... .......... 298 ATATGAAGTA CATTCCATTT GGATCAGGGA GAAGAATTTG TGCTGGAATT CCTTTAGCAG 111449 .......... .......... .......... .......... .......... .......... 298 AGAAAATGCT TATGTTTATA TTTGCTTCAT TGCTTCATTC CTTTGACTGG AAACTCCCTG 111509 .......... .......... .......... .......... .......... .......... 298 AGGGAGAAAA CGTTGATATT TCGGAGGAAT TTGGACTCGC CCTCAAGAAA AGTGAGAGGC 111569 .......... .......... .......... .......... .......... .......... 298 TATTGGTCAT CCTTACTCCC AGTTTACCGA ACTTGAAGCT ATATCAGTAA AACCAAGAAA 111629 .......... .......... .......... .......... .......... .......... 298 CTTTAAGGAC CTTGACACGA TTTTTCCCAC AGGTTGTAGT ATTTATAATA TCAGAGTACG 111689 .......... .......... .......... .......... .......... .......... 298 TATTTGTTGG TTGGTCACTT TCTTTCACTT GTTCAAAGTT CAAACTAGTT GTTGTCACTA 111749 .......... .......... .......... .......... .......... .......... 298 CTGCATTATT GCTGAGGTCT GAGGAGACGA GGTTGCATTT ACCCGTTTTT ATCTTTTGAA 111809 .......... .......... .......... .......... .......... .......... 298 CTTCTCAAAA ATGTCAGCTT GGTGCATGTC AGGTCCTGAG GATCCAATAC GGGTATGACA 111869 .......... .......... .......... .......... .......... .......... 298 ATATTCATTA GTTTGTTGTA AATAATGAGT GCGGGTAAAA CTGGACTTGT CCTTATTTTA 111929 .......... .......... .......... .......... .......... .......... 298 GGAAGGATGA CTAATAGTCT GTTTAGTCAA GCTTCCAAAA TCTGTTTATT TTGAATAGTA 111989 .......... .......... .......... .......... .......... .......... 298 TTTTTTTGTT AGAAGTGCTC ATTGAATGAA GTTATTTATT TCTTTTTTTT GGAATATAGC 112049 .......... .......... .......... .......... .......... .......... 298 AGTTTGTCCA TATCATTGAT TTGTGTTTGA TCAATATTTT TGTCAACTTA TGCTACTAAT 112109 .......... .......... .......... .......... .......... .......... 298 CGAAAATACT TATTTTTATC CTAAAAGCTT GGTCAGACAA CTCAACTCTC TGAATAAGCA 112169 .......... .......... .......... .......... .......... .......... 298 CTTTTGGCTT CACCAAAGCT TGGTCAAACA GACTATCAAT CTAACAGATA CGAGAAACTT 112229 .......... .......... .......... .......... .......... .......... 298 TAATTTTTGT TTCTCCAAAA GAAATGAAAG AAAAAGATAA AAAGGGTTGT TTTCGGAAAT 112289 .......... .......... .......... .......... .......... .......... 298 TTGTGAAACA ACAGCTATTT TACTGGTTTT TTCTTTGAAG TTTGAAGCAC CAGTAAGGTT 112349 .......... .......... .......... .......... .......... .......... 298 GGGGAGGTAT ACTGTATAGT CATATTCATA TTGTGTTTCT GCAGAGTCAT ATATACTAGT 112409 .......... .......... .......... .......... .......... .......... 298 TTCTGAGGAC GTGCTTCGCA CGTGTGTTTC ATGTGAATTT TTATAGATAC GTTAGAATGA 112469 .......... .......... .......... .......... .......... .......... 298 CTAAAATCTA ATGGAAATAT ATATGTAAAT TGTAATGAAT AATAAAATGT ATCAATTACA 112529 .......... .......... .......... .......... .......... .......... 298 AAATTCAAAG ACTTACGGCA ATAAAACATT CATAGAAAAC TAAATTAAGA AGTCTAACAG 112589 .......... .......... .......... .......... .......... .......... 298 AGTGAAAAAA AGATAAAAAG AAACAGAATA TTTAAGAAAA AAATACAATA TAGACATTAT 112649 | |||||||||| .......... .......... .......... .......... .........A TAGACATTAT 309 TCTTATAAGA TTGATGTATA TATAGATGAA AAAATAAGTA CAAAATTAGT ACATAACTCT 112709 |||||||||| |||||||||| |||| || | |||||||||| |||||||||| |||||||||| TCTTATAAGA TTGATGTATA AATAGGTG-A AAAATAAGTA CAAAATTAGT ACATAACTCT 368 CTGAGTTTTT ATCGACTCCT TTCATATCCT ATAAAAATTC AAGAGTCTTC ATCATCTATT 112769 || |||| | | |||||||| |||||||| | || |||||| |||||||||| |||||||| | CTAAGTTCTC ACCGACTCCT TTCATATCGT ATTAAAATTT AAGAGTCTTC ATCATCTACT 428 TTTACTATAG AATAAAAATA ATAGCCTATT AATCTTGATA GGGGTTTCAT GAGATAAAGA 112829 |||||||||| ||||||||| |||||||| | ||||||| || ||||||| || |||||||| | TTTACTATAG AATAAAAATG ATAGCCTAAT AATCTTGCTA GGGGTTTTAT GAGATAAAAA 488 AGTTAAATTT ATATAAATAG AATAAAAGGA ATATCAAAAG ATATCTTAAA GTTTTAGTTT 112889 |||| ||||| |||||||||| || | ||||| || || |||| |||||||||| |||||||||| AGTTTAATTT ATATAAATAG AAAAGAAGGA ATGTCCAAAG ATATCTTAAA GTTTTAGTTT 548 AAATATTTGG AGGTTATGAA TATGAAAAGA T-AGAGTTAT GAATATTAAG AGTATAAAAG 112948 |||||||| | | | |||||| |||||||||| | |||| ||| |||||||||| ||||| |||| AAATATTTAG AAGGTATGAA TATGAAAAGA TGAGAG-TAT GAATATTAAG AGTATTAAAG 607 TTAAATAAGT AATTAGAAAA TAATAATAAA TAAATGAAGA ATATGAAAAA AAAATTAAAG 113008 || ||||||| ||| |||||| |||||||||| |||||||| | |||||||||| ||||||||| TTTAATAAGT AATCAGAAAA TAATAATAAA TAAATGAACA ATATGAAAAA GAAATTAAAG 667 TGAGCAAACC ATGTAAAAAG AACAACCACA GTTCTTATCA TGCAATTAAG CATTAAT 113065 | | |||||| | ||| |||| |||||| | | |||||||||| || |||| || ||||||| TTACCAAACC ACGTAGAAAG AACAACTAAA GTTCTTATCA TGTAATTGAG CATTAAT 724 hqPGS_C08HBa0060C12.1+_SGN-E317264+ (110670 110698,112639 113065) ******************************************************************************** EST sequence 403 -strand 641 n (File: SGN-E301078-) 1 ATATGTAAAT TGTAATGAAT AATAAAATGT AACAATTACA AAATTCAAAG ACATACGACA 61 ATAAATCATT CATAGAAAAC TAAATTAAGA AGTCTAACAG AGTGAAAAAA AAGACTAAAA 121 GAAACAGAAT ATTTAAGAAA AAAATACAAT ATAGACATTA TTCTTATAAG ATTGATGTAT 181 ATATAGATGA AAAAATAAGT AAAAATTAGT ACATAACTCT CTGAGTTTTT ATCGACTCCT 241 TTCATATCCT ATCAAAATTC AAGAGTTTTC AGCATCTATT TTTACTATAG AATAAAAATA 301 ATAATCTTGA TAGGGGTTTC ATGAGATAAA GAAGTTGAAT TTATACAAAT AGAATAGAAG 361 GAATACCAAA AGATATCTTA AAGTTTAATT TAAATATTTG GAGGTTATGA ATATGAAAAG 421 ATGATAGTTA TGAATATTAA GAGTGTTGTG CGAAATTTGA GATAATACGA GAAAATATAT 481 AAACGCGAAA ACCAAGACAC CAGTTTTACG TGGTTCACCA ATAAATTGGC TACGTCCACG 541 GGAAGAGAGG GAGCAATTTT ATTATGGAGA GGCAAAAACA GAATTACAGA ATAGGGTTTG 601 CCATAGCGTC TATATATAGT GCTAAGCTAC ACCCTAAAAG G Predicted gene structure (within gDNA segment 111880 to 115511): Exon 1 112490 112981 ( 492 n); cDNA 1 482 ( 482 n); score: 0.902 MATCH C08HBa0060C12.1+ SGN-E301078- 0.902 492 0.768 C PGS_C08HBa0060C12.1+_SGN-E301078- (112490 112981) Alignment (genomic DNA sequence = upper lines): ATATGTAAAT TGTAATGAAT AATAAAATGT ATCAATTACA AAATTCAAAG ACTTACGGCA 112549 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| || |||| || ATATGTAAAT TGTAATGAAT AATAAAATGT AACAATTACA AAATTCAAAG ACATACGACA 60 ATAAAACATT CATAGAAAAC TAAATTAAGA AGTCTAACAG AGTG-AAAAA AAGATAAAAA 112608 ||||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| |||| |||| ATAAATCATT CATAGAAAAC TAAATTAAGA AGTCTAACAG AGTGAAAAAA AAGACTAAAA 120 GAAACAGAAT ATTTAAGAAA AAAATACAAT ATAGACATTA TTCTTATAAG ATTGATGTAT 112668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACAGAAT ATTTAAGAAA AAAATACAAT ATAGACATTA TTCTTATAAG ATTGATGTAT 180 ATATAGATGA AAAAATAAGT ACAAAATTAG TACATAACTC TCTGAGTTTT TATCGACTCC 112728 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ATATAGATGA AAAAATAAGT A-AAAATTAG TACATAACTC TCTGAGTTTT TATCGACTCC 239 TTTCATATCC TATAAAAATT CAAGAGTCTT CATCATCTAT TTTTACTATA GAATAAAAAT 112788 |||||||||| ||| |||||| ||||||| || || ||||||| |||||||||| |||| ||| TTTCATATCC TATCAAAATT CAAGAGTTTT CAGCATCTAT TTTTACTATA GAAT--AAA- 296 AATAGCCTAT TAATCTTGAT AGGGGTTTCA TGAGATAAAG AAGTTAAATT TATATAAATA 112848 |||| | |||||||||| |||||||||| |||||||||| ||||| |||| |||| ||||| AATA----A- TAATCTTGAT AGGGGTTTCA TGAGATAAAG AAGTTGAATT TATACAAATA 351 GAATAAAAGG AATATCAAAA GATATCTTAA AGTTTTAGTT TAAATATTTG GAGGTTATGA 112908 ||||| |||| |||| ||||| |||||||||| || |||| || |||||||||| |||||||||| GAATAGAAGG AATACCAAAA GATATCTTAA AG-TTTAATT TAAATATTTG GAGGTTATGA 410 ATATGAAAAG AT-AGAGTTA TGAATATTAA GAGTATAAAA GTTAAATAAG TAATTAGAAA 112967 |||||||||| || | ||||| |||||||||| |||| | | |||| | || | | ATATGAAAAG ATGATAGTTA TGAATATTAA GAGTGT-TGT GCGAAATTTG AGATAATACG 469 ATAATAATAA ATAA 112981 | || |||| |||| AGAA-AATAT ATAA 482 hqPGS_C08HBa0060C12.1+_SGN-E301078- (112490 112981) ******************************************************************************** EST sequence 404 -strand 575 n (File: SGN-E301194-) 1 CATTCATAGA AAACTAAATT AAGAAGTCTA ACAGAGTGAA AAAAAAGACT AAAAGAAACA 61 GAATATTTAA GAAAAAAATA CAATATAGAC ATTATTCTTA TAAGATTGAT GTATATATAG 121 ATGAAAAAAT AAGTAAAAAT TAGTACATAA CTCTCTGAGT TTTTATCGAC TCCTTTCATA 181 TCCTATCAAA ATTCAAGAGT TTTCAGCATC TATTTTTACT ATAGAATAAA AATAATAATC 241 TTGATAGGGG TTTCATGAGA TAAAGAAGTT GAATTTATAC AAATAGAATA GAAGGAATAC 301 CAAAAGATTT CTTAAAGTTT AATTTAAATA TTTGGAGGTT ATGAATATGA AAAGATGATA 361 GTTATGAATA TTAAGAGTGT TGTGCGAAAT TTGAGATAAT ACGAGAAAAT ATATAAACGC 421 GAAAAACAAG ACAACAGATT TACGTGGTTC ACCAATAAAT TGGCTACGTC CACGGGAAGA 481 GAGGGAGCAA TTTTATTATG GAGAGGCAAA AACAGAATTA CAGAATAGGG TTTGCCATAG 541 CGTCTATATA TAGTGCTAAG CTACGCCCTA AAAGG Predicted gene structure (within gDNA segment 111946 to 115511): Exon 1 112556 113019 ( 464 n); cDNA 1 454 ( 454 n); score: 0.863 MATCH C08HBa0060C12.1+ SGN-E301194- 0.863 464 0.807 C PGS_C08HBa0060C12.1+_SGN-E301194- (112556 113019) Alignment (genomic DNA sequence = upper lines): CATTCATAGA AAACTAAATT AAGAAGTCTA ACAGAGTG-A AAAAAAGATA AAAAGAAACA 112614 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| |||||||||| CATTCATAGA AAACTAAATT AAGAAGTCTA ACAGAGTGAA AAAAAAGACT AAAAGAAACA 60 GAATATTTAA GAAAAAAATA CAATATAGAC ATTATTCTTA TAAGATTGAT GTATATATAG 112674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATATTTAA GAAAAAAATA CAATATAGAC ATTATTCTTA TAAGATTGAT GTATATATAG 120 ATGAAAAAAT AAGTACAAAA TTAGTACATA ACTCTCTGAG TTTTTATCGA CTCCTTTCAT 112734 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAAAAAT AAGTA-AAAA TTAGTACATA ACTCTCTGAG TTTTTATCGA CTCCTTTCAT 179 ATCCTATAAA AATTCAAGAG TCTTCATCAT CTATTTTTAC TATAGAATAA AAATAATAGC 112794 ||||||| || |||||||||| | |||| ||| |||||||||| |||||||| ||| |||| ATCCTATCAA AATTCAAGAG TTTTCAGCAT CTATTTTTAC TATAGAAT-- AAA-AATA-- 234 CTATTAATCT TGATAGGGGT TTCATGAGAT AAAGAAGTTA AATTTATATA AATAGAATAA 112854 | |||||| |||||||||| |||||||||| ||||||||| |||||||| | ||||||||| --A-TAATCT TGATAGGGGT TTCATGAGAT AAAGAAGTTG AATTTATACA AATAGAATAG 291 AAGGAATATC AAAAGATATC TTAAAGTTTT AGTTTAAATA TTTGGAGGTT ATGAATATGA 112914 |||||||| | ||||||| || |||||| ||| | |||||||| |||||||||| |||||||||| AAGGAATACC AAAAGATTTC TTAAAG-TTT AATTTAAATA TTTGGAGGTT ATGAATATGA 350 AAAGAT-AGA GTTATGAATA TTAAGAGTAT AAAAGTTAAA TAAGTAATTA GAAAATAATA 112973 |||||| | | |||||||||| |||||||| | | ||| | | || | | | || | AAAGATGATA GTTATGAATA TTAAGAGTGT -TGTGCGAAA TTTGAGATAA TACGAGAA-A 408 ATAAATAAAT GAAGAATATG A-AAAAAAAA TTAAAGTGAG CAAACCA 113019 ||| ||||| | || | | | || | | || | ||| | |||| ATATATAAAC GCGAAAAACA AGACAACAGA TTTACGTG-G TTCACCA 454 hqPGS_C08HBa0060C12.1+_SGN-E301194- (112556 113019) ******************************************************************************** EST sequence 14 +strand 684 n (File: SGN-E371571+) 1 TTTTTTTTTG TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATAGATTAGA 61 TATTTAATTA GGAATTAATC TTAGGAATTC TAAAAGTCAT TAACATTTAA TTAAATTTAT 121 ATAATTAAAT ATTTAAATAT TTTATAACAA TTTAATTAAT AGAAGGAGTA AAATCGTAAT 181 TCAACTTTCA ACTTTTTTGT TCATGCTTTT AGTAATATAT GATTCTAAGC TGATTCTTAG 241 GGATTTAGAT TTGTACTTAC CTAAGTTAGT ATTTTCTTTA CTTGTATTTA AATCATTGTC 301 TTCTTTGGAT AATACACATT GAAATTACTC CATACTTCTG GTAGATTTTA AAAACCATGA 361 TTCACAAAAC ATTCTCTTTT TTATTCATAG CCATTTTTTT CTTAATTTTT TGTTTATCCT 421 CAACAACATC CTGTACAAGA TTATTACAAG CACGTAGGGC TATTATGGCT GATGATGATA 481 ATGGTGATTA TAATCAGGAT AATAATAATA ATAATGATGA TGATTATAAT GATGCTAGCT 541 CACCAGCAAT TCCACCAGAG TATGTTGGAA TTCCAATGCG ACCTCATTCC TCTAAACCAG 601 ATCATTCGGC AACTGATCAA CACCCACCAC CTGCTGTTAT ACACCCACCC CCTGCAACCC 661 CCACGGCATG CAGTGGAATG GATC Predicted gene structure (within gDNA segment 112569 to 118818): Exon 1 113266 113481 ( 216 n); cDNA 8 223 ( 216 n); score: 0.949 Intron 1 113482 114312 ( 831 n); Pd: 0.000 (s: 0.96), Pa: 0.946 (s: 0.56) Exon 2 114313 114421 ( 109 n); cDNA 224 326 ( 103 n); score: 0.560 MATCH C08HBa0060C12.1+ SGN-E371571+ 0.818 325 0.475 C PGS_C08HBa0060C12.1+_SGN-E371571+ (113266 113481,114313 114421) Alignment (genomic DNA sequence = upper lines): TTATAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 113325 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 67 TTAGGAATTA ATCTTAGGAA GTCTAAAAGT CATTAACATT TAATTAAATT TATACAATCA 113385 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||| | TTAGGAATTA ATCTTAGGAA TTCTAAAAGT CATTAACATT TAATTAAATT TATATAATTA 127 AATATTTAAA TATTTTATAA TAATTTAATT TATAAAAAGG GTAAAATCGT AATTCAACTT 113445 |||||||||| |||||||||| ||||||||| ||| || | |||||||||| |||||||||| AATATTTAAA TATTTTATAA CAATTTAATT AATAGAAGGA GTAAAATCGT AATTCAACTT 187 TTAACTTTTT TGTTCATGCT TTTTGTAATA TATGATATAT ATATATATAT ATATATATAT 113505 | |||||||| |||||||||| ||| |||||| |||||| TCAACTTTTT TGTTCATGCT TTTAGTAATA TATGAT.... .......... .......... 223 ATATAAATGT GTGTGTGTGT GTGTGTGTAT ATATGGTGTT AGAATATTGA GTTTTCCTTG 113565 .......... .......... .......... .......... .......... .......... 223 GCAAAAATCT CTTATGGTAT GTTATTTATG TCATATATAT GATGTTGGTA GGTCCCTTCT 113625 .......... .......... .......... .......... .......... .......... 223 AACTTTTAAG GTGTTCAAAT ATGACCAAAG AAACCTTTCC TTTTCCCAGT TCAAATTCAA 113685 .......... .......... .......... .......... .......... .......... 223 ACCAATTTTG GTCACTGCTC CATTATTGAT GAGTTGATGT CGTGATGAGG TTGCATTTGA 113745 .......... .......... .......... .......... .......... .......... 223 CTTTAACCGT TCATGTCTTA TCCAATGTTT CTAGATTTTT CAAATATATA TGTTTCTTGG 113805 .......... .......... .......... .......... .......... .......... 223 TGCATATCGG ATTCTCCAAA AGTAATGCCT GTTTCAAGGA TCCAACACTG GAAGGACAAC 113865 .......... .......... .......... .......... .......... .......... 223 ATTTTGGAGA GTACAAACAA CATAGGTCTT ATCTTTATGG TCGCGAAAAA TGACTTATAT 113925 .......... .......... .......... .......... .......... .......... 223 ACTGATCACA CTGTCTGATC TTTAATTAGT TATGATGTGA GATCTAAATC TAATGATAGA 113985 .......... .......... .......... .......... .......... .......... 223 AAAATATGGC ATAGTGATAA ATGAAGTTAA AGGAGAACTA TGAGGTTTCA GGTTCAATGA 114045 .......... .......... .......... .......... .......... .......... 223 TGGAAAAATA TGGCATAGTG ATAAATGAAG TTAAAGGAGA ACTATGAGGT TTCAGGTTTA 114105 .......... .......... .......... .......... .......... .......... 223 AATTCCAGCA TTACTAGTCG TCTGGTTGAT ATACAAGTTA TGCAAGGATT ATAACGACTA 114165 .......... .......... .......... .......... .......... .......... 223 ATTCACATTA TCAGCTAACT AAATAATGTA CAAAATTATG TTGAATTTTA TATAATTTCT 114225 .......... .......... .......... .......... .......... .......... 223 TTTCATGTGT CTAAACCTTG ATACACAGAG CTACCTGCAT TAGGAATCCC CTTTTATTGA 114285 .......... .......... .......... .......... .......... .......... 223 CCAGCCACTT CATTCTTACT TTGCCAGCTT GACACAGACC TTTTGGACAC TGAGAATGAG 114345 | | | || | || | | | || || | .......... .......... .......-TC TAAGCTGA-T TCTTAGGGAT TTAG-ATTTG 253 TACTTAACAA AGACAGGGAT ATATTGAGCT AAAATTTAGA GCAATTTATT TCATTGTGAG 114405 |||||| | | || || | | || | || ||||| | | ||| | || ||| || TACTTACCTA AGTTAGTATT TTCTTTA-CT TGTATTTAAA TC-ATTGTCT TCTTTG-GAT 310 GCCAAAAAAA AAAATT 114421 | | | ||||| AATACACATT GAAATT 326 hqPGS_C08HBa0060C12.1+_SGN-E371571+ (113266 113481) ******************************************************************************** EST sequence 18 +strand 599 n (File: SGN-E370504+) 1 TTTTTTTTTG TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATAGATTAGA 61 TATTTAATTA GGAATTAATC TTAGGAATTC TAAAAGTCAT TAACATTTAA TTAAATTTAT 121 ATAATTAAAT ATTTAAATAT TTTATAACAA TTTAATTAAT AGAAGGAGTA AAATCGTAAT 181 TCAACTTTCA ACTTTTTTGT TCATGCTTTT AGTAATATAT GATTCTAAGC TGATTCTTAG 241 GGATTTAGAT TTGTACTTAC CTAAGTTAGT ATTTTCTTTA CTTGTATTTA AATCATTGTC 301 TTCTTTGGAT AATACACATT GAAATTACTC CATACTTCTG GTAGATTTTA AAAACCATGA 361 TTCACAAAAC ATTCTCTTTT TTATTCATAG CCATTTTTTT CTTAATTTTT TGTTTATCCT 421 CAACAACATC CTGTACAAGA TTATTACAAG CACGTAGGGC TATTATGGCT GATGATGATA 481 ATGGTGATTA TAATCAGGAT AATAATAATA ATAATGATGA TGATTATAAT GATGCTAGCT 541 CACCAGCAAT TCCACCAGAG TATGTTGGAA TTCCAATGCG ACCTCATTCC TCTAAACCA Predicted gene structure (within gDNA segment 112569 to 117968): Exon 1 113266 113481 ( 216 n); cDNA 8 223 ( 216 n); score: 0.949 Intron 1 113482 114312 ( 831 n); Pd: 0.000 (s: 0.96), Pa: 0.946 (s: 0.56) Exon 2 114313 114421 ( 109 n); cDNA 224 326 ( 103 n); score: 0.560 MATCH C08HBa0060C12.1+ SGN-E370504+ 0.818 325 0.543 C PGS_C08HBa0060C12.1+_SGN-E370504+ (113266 113481,114313 114421) Alignment (genomic DNA sequence = upper lines): TTATAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 113325 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 67 TTAGGAATTA ATCTTAGGAA GTCTAAAAGT CATTAACATT TAATTAAATT TATACAATCA 113385 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||| | TTAGGAATTA ATCTTAGGAA TTCTAAAAGT CATTAACATT TAATTAAATT TATATAATTA 127 AATATTTAAA TATTTTATAA TAATTTAATT TATAAAAAGG GTAAAATCGT AATTCAACTT 113445 |||||||||| |||||||||| ||||||||| ||| || | |||||||||| |||||||||| AATATTTAAA TATTTTATAA CAATTTAATT AATAGAAGGA GTAAAATCGT AATTCAACTT 187 TTAACTTTTT TGTTCATGCT TTTTGTAATA TATGATATAT ATATATATAT ATATATATAT 113505 | |||||||| |||||||||| ||| |||||| |||||| TCAACTTTTT TGTTCATGCT TTTAGTAATA TATGAT.... .......... .......... 223 ATATAAATGT GTGTGTGTGT GTGTGTGTAT ATATGGTGTT AGAATATTGA GTTTTCCTTG 113565 .......... .......... .......... .......... .......... .......... 223 GCAAAAATCT CTTATGGTAT GTTATTTATG TCATATATAT GATGTTGGTA GGTCCCTTCT 113625 .......... .......... .......... .......... .......... .......... 223 AACTTTTAAG GTGTTCAAAT ATGACCAAAG AAACCTTTCC TTTTCCCAGT TCAAATTCAA 113685 .......... .......... .......... .......... .......... .......... 223 ACCAATTTTG GTCACTGCTC CATTATTGAT GAGTTGATGT CGTGATGAGG TTGCATTTGA 113745 .......... .......... .......... .......... .......... .......... 223 CTTTAACCGT TCATGTCTTA TCCAATGTTT CTAGATTTTT CAAATATATA TGTTTCTTGG 113805 .......... .......... .......... .......... .......... .......... 223 TGCATATCGG ATTCTCCAAA AGTAATGCCT GTTTCAAGGA TCCAACACTG GAAGGACAAC 113865 .......... .......... .......... .......... .......... .......... 223 ATTTTGGAGA GTACAAACAA CATAGGTCTT ATCTTTATGG TCGCGAAAAA TGACTTATAT 113925 .......... .......... .......... .......... .......... .......... 223 ACTGATCACA CTGTCTGATC TTTAATTAGT TATGATGTGA GATCTAAATC TAATGATAGA 113985 .......... .......... .......... .......... .......... .......... 223 AAAATATGGC ATAGTGATAA ATGAAGTTAA AGGAGAACTA TGAGGTTTCA GGTTCAATGA 114045 .......... .......... .......... .......... .......... .......... 223 TGGAAAAATA TGGCATAGTG ATAAATGAAG TTAAAGGAGA ACTATGAGGT TTCAGGTTTA 114105 .......... .......... .......... .......... .......... .......... 223 AATTCCAGCA TTACTAGTCG TCTGGTTGAT ATACAAGTTA TGCAAGGATT ATAACGACTA 114165 .......... .......... .......... .......... .......... .......... 223 ATTCACATTA TCAGCTAACT AAATAATGTA CAAAATTATG TTGAATTTTA TATAATTTCT 114225 .......... .......... .......... .......... .......... .......... 223 TTTCATGTGT CTAAACCTTG ATACACAGAG CTACCTGCAT TAGGAATCCC CTTTTATTGA 114285 .......... .......... .......... .......... .......... .......... 223 CCAGCCACTT CATTCTTACT TTGCCAGCTT GACACAGACC TTTTGGACAC TGAGAATGAG 114345 | | | || | || | | | || || | .......... .......... .......-TC TAAGCTGA-T TCTTAGGGAT TTAG-ATTTG 253 TACTTAACAA AGACAGGGAT ATATTGAGCT AAAATTTAGA GCAATTTATT TCATTGTGAG 114405 |||||| | | || || | | || | || ||||| | | ||| | || ||| || TACTTACCTA AGTTAGTATT TTCTTTA-CT TGTATTTAAA TC-ATTGTCT TCTTTG-GAT 310 GCCAAAAAAA AAAATT 114421 | | | ||||| AATACACATT GAAATT 326 hqPGS_C08HBa0060C12.1+_SGN-E370504+ (113266 113481) ******************************************************************************** EST sequence 27 +strand 530 n (File: SGN-E280629+) 1 TTTTTTTTTG TAATTATTAT ATACATATAG ATTATAGATG ATAAATATTA ATAGATTAGA 61 TATTTAATTA GGAATTAATC TTAGGAATTC TAAAAGTCAT TAACATTTAA TTAAATTTAT 121 ATAATTAAAT ATTTAAATAT TTTATAACAA TTTAATTAAT AGAAGGAGTA AAATCGTAAT 181 TCAACTTTCA ACTTTTTTGT TCATGCTTTT AGTAATATAT GATTCTAAGC TGATTCTTAG 241 GGATTTAGAT TTGTACTTAC CTAAGTTAGT ATTTTCTTTA CTTGTATTTA AATCATTGTC 301 TTCTTTGGAT AATACACATT GAAATTACTC CATACTTCTG GTAGATTTTA AAAACCATGA 361 TTCACAAAAC ATTCTCTTTT TTATTCATAG CCATTTTTTT CTTAATTTTT TGTTTATCCT 421 CAACAACATC CTGTACAAGA TTATTACAAG CACGTAGGGC TATTATGGCT GATGATGATA 481 ATGGTGATTA TAATCAGGAT AATAATAATA ATAATGATGA TGATTATAAT Predicted gene structure (within gDNA segment 112569 to 117278): Exon 1 113266 113481 ( 216 n); cDNA 8 223 ( 216 n); score: 0.949 Intron 1 113482 114312 ( 831 n); Pd: 0.000 (s: 0.96), Pa: 0.946 (s: 0.56) Exon 2 114313 114421 ( 109 n); cDNA 224 326 ( 103 n); score: 0.560 MATCH C08HBa0060C12.1+ SGN-E280629+ 0.818 325 0.613 C PGS_C08HBa0060C12.1+_SGN-E280629+ (113266 113481,114313 114421) Alignment (genomic DNA sequence = upper lines): TTATAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 113325 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 67 TTAGGAATTA ATCTTAGGAA GTCTAAAAGT CATTAACATT TAATTAAATT TATACAATCA 113385 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||| | TTAGGAATTA ATCTTAGGAA TTCTAAAAGT CATTAACATT TAATTAAATT TATATAATTA 127 AATATTTAAA TATTTTATAA TAATTTAATT TATAAAAAGG GTAAAATCGT AATTCAACTT 113445 |||||||||| |||||||||| ||||||||| ||| || | |||||||||| |||||||||| AATATTTAAA TATTTTATAA CAATTTAATT AATAGAAGGA GTAAAATCGT AATTCAACTT 187 TTAACTTTTT TGTTCATGCT TTTTGTAATA TATGATATAT ATATATATAT ATATATATAT 113505 | |||||||| |||||||||| ||| |||||| |||||| TCAACTTTTT TGTTCATGCT TTTAGTAATA TATGAT.... .......... .......... 223 ATATAAATGT GTGTGTGTGT GTGTGTGTAT ATATGGTGTT AGAATATTGA GTTTTCCTTG 113565 .......... .......... .......... .......... .......... .......... 223 GCAAAAATCT CTTATGGTAT GTTATTTATG TCATATATAT GATGTTGGTA GGTCCCTTCT 113625 .......... .......... .......... .......... .......... .......... 223 AACTTTTAAG GTGTTCAAAT ATGACCAAAG AAACCTTTCC TTTTCCCAGT TCAAATTCAA 113685 .......... .......... .......... .......... .......... .......... 223 ACCAATTTTG GTCACTGCTC CATTATTGAT GAGTTGATGT CGTGATGAGG TTGCATTTGA 113745 .......... .......... .......... .......... .......... .......... 223 CTTTAACCGT TCATGTCTTA TCCAATGTTT CTAGATTTTT CAAATATATA TGTTTCTTGG 113805 .......... .......... .......... .......... .......... .......... 223 TGCATATCGG ATTCTCCAAA AGTAATGCCT GTTTCAAGGA TCCAACACTG GAAGGACAAC 113865 .......... .......... .......... .......... .......... .......... 223 ATTTTGGAGA GTACAAACAA CATAGGTCTT ATCTTTATGG TCGCGAAAAA TGACTTATAT 113925 .......... .......... .......... .......... .......... .......... 223 ACTGATCACA CTGTCTGATC TTTAATTAGT TATGATGTGA GATCTAAATC TAATGATAGA 113985 .......... .......... .......... .......... .......... .......... 223 AAAATATGGC ATAGTGATAA ATGAAGTTAA AGGAGAACTA TGAGGTTTCA GGTTCAATGA 114045 .......... .......... .......... .......... .......... .......... 223 TGGAAAAATA TGGCATAGTG ATAAATGAAG TTAAAGGAGA ACTATGAGGT TTCAGGTTTA 114105 .......... .......... .......... .......... .......... .......... 223 AATTCCAGCA TTACTAGTCG TCTGGTTGAT ATACAAGTTA TGCAAGGATT ATAACGACTA 114165 .......... .......... .......... .......... .......... .......... 223 ATTCACATTA TCAGCTAACT AAATAATGTA CAAAATTATG TTGAATTTTA TATAATTTCT 114225 .......... .......... .......... .......... .......... .......... 223 TTTCATGTGT CTAAACCTTG ATACACAGAG CTACCTGCAT TAGGAATCCC CTTTTATTGA 114285 .......... .......... .......... .......... .......... .......... 223 CCAGCCACTT CATTCTTACT TTGCCAGCTT GACACAGACC TTTTGGACAC TGAGAATGAG 114345 | | | || | || | | | || || | .......... .......... .......-TC TAAGCTGA-T TCTTAGGGAT TTAG-ATTTG 253 TACTTAACAA AGACAGGGAT ATATTGAGCT AAAATTTAGA GCAATTTATT TCATTGTGAG 114405 |||||| | | || || | | || | || ||||| | | ||| | || ||| || TACTTACCTA AGTTAGTATT TTCTTTA-CT TGTATTTAAA TC-ATTGTCT TCTTTG-GAT 310 GCCAAAAAAA AAAATT 114421 | | | ||||| AATACACATT GAAATT 326 hqPGS_C08HBa0060C12.1+_SGN-E280629+ (113266 113481) ******************************************************************************** EST sequence 284 +strand 523 n (File: SGN-E391217+) 1 TTTTTTTTTT GTAATTATTA TATACATATA GATTATAGAT GATAAATATT AATAGATTAG 61 ATATTTAATT AGGAATTAAT CTTAGGAATT CTAAAAGTCA TTAACATTTA ATTAAATTTA 121 TATAATTAAA TATTTAAATA TTTTATAACA ATTTAATTAA TAGAAGGAGT AAAATCGTAA 181 TTCAACTTTC AACTTTTTTG TTCATGCTTT TAGTAATATA TGATTCTAAG CTGATTCTTA 241 GGGATTTAGA TTTGTACTTA CCTAAGTTAG TATTTTCTTT ACTTGTATTT AAATCATTGT 301 CTTCTTTGGA TAATACACAT TGAAATTACT CCATACTTCT GGTAGATTTT AAAAACCATG 361 ATTCACAAAA CATTCTCTTT TTTATTCATA GCCATTTTTT TCTTAATTTT TTGTTTATCC 421 TCAACGGCGT CCTGTACAAG ATTATTACAA GCACGTAGGG CTATTATGGC TGATGATGAT 481 AATGGTGATT ATAATCAGGA TAATAATAAT AATAATGATG ATG Predicted gene structure (within gDNA segment 112559 to 117198): Exon 1 113266 113481 ( 216 n); cDNA 9 224 ( 216 n); score: 0.949 Intron 1 113482 114312 ( 831 n); Pd: 0.000 (s: 0.96), Pa: 0.946 (s: 0.56) Exon 2 114313 114421 ( 109 n); cDNA 225 327 ( 103 n); score: 0.560 MATCH C08HBa0060C12.1+ SGN-E391217+ 0.818 325 0.621 C PGS_C08HBa0060C12.1+_SGN-E391217+ (113266 113481,114313 114421) Alignment (genomic DNA sequence = upper lines): TTATAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 113325 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAATTAT TATATACATA TAGATTATAG ATGATAAATA TTAATAGATT AGATATTTAA 68 TTAGGAATTA ATCTTAGGAA GTCTAAAAGT CATTAACATT TAATTAAATT TATACAATCA 113385 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||| | TTAGGAATTA ATCTTAGGAA TTCTAAAAGT CATTAACATT TAATTAAATT TATATAATTA 128 AATATTTAAA TATTTTATAA TAATTTAATT TATAAAAAGG GTAAAATCGT AATTCAACTT 113445 |||||||||| |||||||||| ||||||||| ||| || | |||||||||| |||||||||| AATATTTAAA TATTTTATAA CAATTTAATT AATAGAAGGA GTAAAATCGT AATTCAACTT 188 TTAACTTTTT TGTTCATGCT TTTTGTAATA TATGATATAT ATATATATAT ATATATATAT 113505 | |||||||| |||||||||| ||| |||||| |||||| TCAACTTTTT TGTTCATGCT TTTAGTAATA TATGAT.... .......... .......... 224 ATATAAATGT GTGTGTGTGT GTGTGTGTAT ATATGGTGTT AGAATATTGA GTTTTCCTTG 113565 .......... .......... .......... .......... .......... .......... 224 GCAAAAATCT CTTATGGTAT GTTATTTATG TCATATATAT GATGTTGGTA GGTCCCTTCT 113625 .......... .......... .......... .......... .......... .......... 224 AACTTTTAAG GTGTTCAAAT ATGACCAAAG AAACCTTTCC TTTTCCCAGT TCAAATTCAA 113685 .......... .......... .......... .......... .......... .......... 224 ACCAATTTTG GTCACTGCTC CATTATTGAT GAGTTGATGT CGTGATGAGG TTGCATTTGA 113745 .......... .......... .......... .......... .......... .......... 224 CTTTAACCGT TCATGTCTTA TCCAATGTTT CTAGATTTTT CAAATATATA TGTTTCTTGG 113805 .......... .......... .......... .......... .......... .......... 224 TGCATATCGG ATTCTCCAAA AGTAATGCCT GTTTCAAGGA TCCAACACTG GAAGGACAAC 113865 .......... .......... .......... .......... .......... .......... 224 ATTTTGGAGA GTACAAACAA CATAGGTCTT ATCTTTATGG TCGCGAAAAA TGACTTATAT 113925 .......... .......... .......... .......... .......... .......... 224 ACTGATCACA CTGTCTGATC TTTAATTAGT TATGATGTGA GATCTAAATC TAATGATAGA 113985 .......... .......... .......... .......... .......... .......... 224 AAAATATGGC ATAGTGATAA ATGAAGTTAA AGGAGAACTA TGAGGTTTCA GGTTCAATGA 114045 .......... .......... .......... .......... .......... .......... 224 TGGAAAAATA TGGCATAGTG ATAAATGAAG TTAAAGGAGA ACTATGAGGT TTCAGGTTTA 114105 .......... .......... .......... .......... .......... .......... 224 AATTCCAGCA TTACTAGTCG TCTGGTTGAT ATACAAGTTA TGCAAGGATT ATAACGACTA 114165 .......... .......... .......... .......... .......... .......... 224 ATTCACATTA TCAGCTAACT AAATAATGTA CAAAATTATG TTGAATTTTA TATAATTTCT 114225 .......... .......... .......... .......... .......... .......... 224 TTTCATGTGT CTAAACCTTG ATACACAGAG CTACCTGCAT TAGGAATCCC CTTTTATTGA 114285 .......... .......... .......... .......... .......... .......... 224 CCAGCCACTT CATTCTTACT TTGCCAGCTT GACACAGACC TTTTGGACAC TGAGAATGAG 114345 | | | || | || | | | || || | .......... .......... .......-TC TAAGCTGA-T TCTTAGGGAT TTAG-ATTTG 254 TACTTAACAA AGACAGGGAT ATATTGAGCT AAAATTTAGA GCAATTTATT TCATTGTGAG 114405 |||||| | | || || | | || | || ||||| | | ||| | || ||| || TACTTACCTA AGTTAGTATT TTCTTTA-CT TGTATTTAAA TC-ATTGTCT TCTTTG-GAT 311 GCCAAAAAAA AAAATT 114421 | | | ||||| AATACACATT GAAATT 327 hqPGS_C08HBa0060C12.1+_SGN-E391217+ (113266 113481) ******************************************************************************** EST sequence 193 +strand 587 n (File: SGN-E267100+) 1 CTGTTATAGC CTTCGGAGAC AGGAGGTCAG AAAGACAATC AAAAATGTGC ATACCAAGAT 61 TGGCAGCCTC ACTGATATTG GTGAATTAGC CTTTGTAACT GAAATGAATG TAATTATGAG 121 TATGATCTTT GGCAGCAATT TTGTAGAGGA GATGGAGAAG CATGGAACTG AATTTAGGGA 181 ATTAGTGATA AAATATCCTC AAATACTGGG AAGGCCAAAC ATATCAGACT TCTTCCCCAT 241 GCTTGCGAGG TTTGATTTAC AAGGAATACA GAAAGACGCG GAGGCTCTTT TGAAGTCGGT 301 TGAAAGTATA TTGGACCCTG CCATAAATGA ACACTTGAAG ATGCTTTCAG ACAGAAGAGA 361 AGGTGAAATC CAGGGGAATG AGAAGAAAGA CTTTATACAG ATCCTGTTAG AGCTGATGGA 421 GCAGAAAGAC ATTGGTATAT CACTAGACTT GGTGAAAATA AAGGCTATCT TGGTGGACAT 481 TGTTATAGGT GGGACTGACT CTACAATCAC AACGATCGAG TGGGTAATGA CAGAGCTTCT 541 GAATAATCCA GAGACAATGT CAAAGGTGCA GCAGGAATTG AAACATG Predicted gene structure (within gDNA segment 114278 to 116519): Exon 1 114878 115352 ( 475 n); cDNA 1 475 ( 475 n); score: 1.000 Intron 1 115353 115797 ( 445 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 115798 115909 ( 112 n); cDNA 476 587 ( 112 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E267100+ 1.000 587 1.000 C PGS_C08HBa0060C12.1+_SGN-E267100+ (114878 115352,115798 115909) Alignment (genomic DNA sequence = upper lines): CTGTTATAGC CTTCGGAGAC AGGAGGTCAG AAAGACAATC AAAAATGTGC ATACCAAGAT 114937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTATAGC CTTCGGAGAC AGGAGGTCAG AAAGACAATC AAAAATGTGC ATACCAAGAT 60 TGGCAGCCTC ACTGATATTG GTGAATTAGC CTTTGTAACT GAAATGAATG TAATTATGAG 114997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAGCCTC ACTGATATTG GTGAATTAGC CTTTGTAACT GAAATGAATG TAATTATGAG 120 TATGATCTTT GGCAGCAATT TTGTAGAGGA GATGGAGAAG CATGGAACTG AATTTAGGGA 115057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGATCTTT GGCAGCAATT TTGTAGAGGA GATGGAGAAG CATGGAACTG AATTTAGGGA 180 ATTAGTGATA AAATATCCTC AAATACTGGG AAGGCCAAAC ATATCAGACT TCTTCCCCAT 115117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTGATA AAATATCCTC AAATACTGGG AAGGCCAAAC ATATCAGACT TCTTCCCCAT 240 GCTTGCGAGG TTTGATTTAC AAGGAATACA GAAAGACGCG GAGGCTCTTT TGAAGTCGGT 115177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGCGAGG TTTGATTTAC AAGGAATACA GAAAGACGCG GAGGCTCTTT TGAAGTCGGT 300 TGAAAGTATA TTGGACCCTG CCATAAATGA ACACTTGAAG ATGCTTTCAG ACAGAAGAGA 115237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGTATA TTGGACCCTG CCATAAATGA ACACTTGAAG ATGCTTTCAG ACAGAAGAGA 360 AGGTGAAATC CAGGGGAATG AGAAGAAAGA CTTTATACAG ATCCTGTTAG AGCTGATGGA 115297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGAAATC CAGGGGAATG AGAAGAAAGA CTTTATACAG ATCCTGTTAG AGCTGATGGA 420 GCAGAAAGAC ATTGGTATAT CACTAGACTT GGTGAAAATA AAGGCTATCT TGGTGGTAAG 115357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCAGAAAGAC ATTGGTATAT CACTAGACTT GGTGAAAATA AAGGCTATCT TGGTG..... 475 TTATATCGTT CCTCTTTTTT TCTATATCGT CGTCCTCTCG TTAACCTTAT TATCCTGTGA 115417 .......... .......... .......... .......... .......... .......... 475 ATCCCATCAG ATTACTGTTG AAAGTACAAT TAAATAATAA AAGTGTGTTT CTCTCTAACA 115477 .......... .......... .......... .......... .......... .......... 475 ACTTAAGTTT TTAGATGAGA TGGTCACACA CTTCAATTTA ACAGTCATAC AAACTTTGTA 115537 .......... .......... .......... .......... .......... .......... 475 AGATTAATTT AGCTAATTAT CTGATTCAAG CATCTTAATC AAGAACTCTA ATCATTTCTC 115597 .......... .......... .......... .......... .......... .......... 475 TAACCACATA TTGGTCAGAG TCATGGAAAC AATCAGATTG TCTAATCACA CCCAAGGGTG 115657 .......... .......... .......... .......... .......... .......... 475 TGGCTCTCTC CGGACTTTGC TAATACGCGA TGTTTTTTGC ACCAGATTGC CTTTTTTTTT 115717 .......... .......... .......... .......... .......... .......... 475 AAGTCCTAAA AAGAAGATAT ACATACTCAT ACCTAAAATG AATGTCGAGT GGTATCTTTA 115777 .......... .......... .......... .......... .......... .......... 475 TGTATGTTTC TTCATTGTAG GACATTGTTA TAGGTGGGAC TGACTCTACA ATCACAACGA 115837 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GACATTGTTA TAGGTGGGAC TGACTCTACA ATCACAACGA 515 TCGAGTGGGT AATGACAGAG CTTCTGAATA ATCCAGAGAC AATGTCAAAG GTGCAGCAGG 115897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGTGGGT AATGACAGAG CTTCTGAATA ATCCAGAGAC AATGTCAAAG GTGCAGCAGG 575 AATTGAAACA TG 115909 |||||||||| || AATTGAAACA TG 587 hqPGS_C08HBa0060C12.1+_SGN-E267100+ (114878 115352,115798 115909) ******************************************************************************** EST sequence 115 +strand 686 n (File: SGN-E391592+) 1 CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 61 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 121 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 181 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 241 CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 301 CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 361 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 421 AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATCAAAAAT GTGCATACCA 481 AGATTGGCAG CCTCACTGAT ATTGGTGAAT TAGCCTTTGT AACTGAAATG AATGTAATTA 541 TGAGTATGAT CTTTGGCAGC AATTTTGTAG AGGAGATGGA GAAGCATGGA ACTGAATTTA 601 GGGAATTAGT GATAAAATAT CCTCAAATAC TGGGAAGGCC AAACATATCA GACTTCTTCC 661 CCATGCTTGC GAGGTTTGAT TTACAA Predicted gene structure (within gDNA segment 113854 to 115749): Exon 1 114454 115139 ( 686 n); cDNA 1 686 ( 686 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E391592+ 1.000 686 1.000 C PGS_C08HBa0060C12.1+_SGN-E391592+ (114454 115139) Alignment (genomic DNA sequence = upper lines): CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 114513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 60 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 114573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 120 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 114633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 180 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 114693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 240 CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 114753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 300 CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 114813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 360 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 114873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 420 AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATCAAAAAT GTGCATACCA 114933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATCAAAAAT GTGCATACCA 480 AGATTGGCAG CCTCACTGAT ATTGGTGAAT TAGCCTTTGT AACTGAAATG AATGTAATTA 114993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTGGCAG CCTCACTGAT ATTGGTGAAT TAGCCTTTGT AACTGAAATG AATGTAATTA 540 TGAGTATGAT CTTTGGCAGC AATTTTGTAG AGGAGATGGA GAAGCATGGA ACTGAATTTA 115053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTATGAT CTTTGGCAGC AATTTTGTAG AGGAGATGGA GAAGCATGGA ACTGAATTTA 600 GGGAATTAGT GATAAAATAT CCTCAAATAC TGGGAAGGCC AAACATATCA GACTTCTTCC 115113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAATTAGT GATAAAATAT CCTCAAATAC TGGGAAGGCC AAACATATCA GACTTCTTCC 660 CCATGCTTGC GAGGTTTGAT TTACAA 115139 |||||||||| |||||||||| |||||| CCATGCTTGC GAGGTTTGAT TTACAA 686 hqPGS_C08HBa0060C12.1+_SGN-E391592+ (114454 115139) ******************************************************************************** EST sequence 161 +strand 536 n (File: SGN-E392906+) 1 CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 61 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 121 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 181 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 241 CATCCTTAGC AAAAGAAGTT GTTCGCGATC AAAACTCCAT TTTTGCCAAC CGTGACCCTC 301 CAATTGCAGG ATTAATGGCC ACATATGGTG GACTATATAT TGGATTTTCT CCCTATGGCT 361 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 421 AATCCTGTTA AAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATTCAAAAA ATGTGCATAC 481 CAAGATTGGC AGACTCACTG ATATTGGTGA ATTAACCTTT GTAATTGAAA TGAAAT Predicted gene structure (within gDNA segment 113854 to 115795): Exon 1 114454 114985 ( 532 n); cDNA 1 534 ( 534 n); score: 0.976 MATCH C08HBa0060C12.1+ SGN-E392906+ 0.976 532 0.993 C PGS_C08HBa0060C12.1+_SGN-E392906+ (114454 114985) Alignment (genomic DNA sequence = upper lines): CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 114513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 60 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 114573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 120 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 114633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 180 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 114693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 240 CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 114753 |||||||||| ||||||||| |||||||||| || ||||||| |||||||||| |||||||||| CATCCTTAGC AAAAGAAGTT GTTCGCGATC AAAACTCCAT TTTTGCCAAC CGTGACCCTC 300 CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 114813 |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| |||||||||| CAATTGCAGG ATTAATGGCC ACATATGGTG GACTATATAT TGGATTTTCT CCCTATGGCT 360 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 114873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 420 AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAGAC AA-TC-AAAA ATGTGCATAC 114931 |||||||||| ||||||||| |||||||||| |||||||||| || || |||| |||||||||| AATCCTGTTA AAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATTCAAAAA ATGTGCATAC 480 CAAGATTGGC AGCCTCACTG ATATTGGTGA ATTAGCCTTT GTAACTGAAA TGAA 114985 |||||||||| || ||||||| |||||||||| |||| ||||| |||| ||||| |||| CAAGATTGGC AGACTCACTG ATATTGGTGA ATTAACCTTT GTAATTGAAA TGAA 534 hqPGS_C08HBa0060C12.1+_SGN-E392906+ (114454 114985) ******************************************************************************** EST sequence 113 +strand 478 n (File: SGN-E391464+) 1 CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 61 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 121 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 181 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 241 CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 301 CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 361 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 421 AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAAAC AATCAAAAAT GTGCATAC Predicted gene structure (within gDNA segment 113854 to 115541): Exon 1 114454 114931 ( 478 n); cDNA 1 478 ( 478 n); score: 0.998 MATCH C08HBa0060C12.1+ SGN-E391464+ 0.998 478 1.000 C PGS_C08HBa0060C12.1+_SGN-E391464+ (114454 114931) Alignment (genomic DNA sequence = upper lines): CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 114513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAATGA TCTATGGATT GCAGCCCTCA CTGTTTCAAT TGTGTTCCTT ACAATTCTTT 60 GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 114573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACAAATT GAACAAGGTG GAATCCAACT TGCCACCAGG GCCTCGTGGC CTTCCGATTG 120 TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 114633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATTCTT ACCATTCCTC CGCGCCAATT TGCATCACCA GCTCACAGAG TTGTCTCAAC 180 AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 114693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGGTCC AATATACAAG TTTTGGCTAG GAGGAAAACT ATGTGTTGTG TTGAATTCAC 240 CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 114753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCTTAGC CAAAGAAGTT GTTCGCGATC AAGACTCCAT TTTTGCCAAC CGTGACCCTC 300 CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 114813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTGCAGG ATTAGTGGCC ACATATGGTG GACTAGATAT TGGATTTTCT CCCTATGGCT 360 CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 114873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTGGCG TGATATGCGC AAACTGTTTG TAAGGGAGAT GCTAAGCAAC AGGAACCTTG 420 AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAGAC AATCAAAAAT GTGCATAC 114931 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||| AATCCTGTTA TAGCCTTCGG AGACAGGAGG TCAGAAAAAC AATCAAAAAT GTGCATAC 478 hqPGS_C08HBa0060C12.1+_SGN-E391464+ (114454 114931) ******************************************************************************** EST sequence 78 +strand 503 n (File: SGN-E205199+) 1 TTTAAATGAT CTATGGATTG CAGCCCTCAC TGTTTCAATT GTGTTCCTTA CAATTCTTTG 61 GTACAAATTG AACAAGGTGG AATCCAACTT GCCACCAGGG CCTCGTGGCC TTCCGATTGT 121 GGGATTCTTA CCATTCCTCC GCGCCAATTT GCATCACCAG CTTACAGAGT TGTCTCAACA 181 GTATGGTCCA ATATACAAGT TTTGGCTAGG AGGAAAACTA TGTGTTGTGT TGAATTCACC 241 ATCCTTAGCC AAAGAAGTTG TTCGCGATCA AGACTCCATT TTTGCCAACC GTGACCCTCC 301 AATTGCAGGA TTAGTGGCCA CATATGGTGG ACTAGATATT GGATTTTCTC CCTATGGCTC 361 CTACTGGCGT GATATGCGCA AACTGTTTGT AAGGGAGATG CTAAGCAACA GGAACCTTGA 421 ATCCTGTTAT AGCCTTCGGA GACAGGAGGT CAGAAAGACA ATCAAAAATG TGCATACCAA 481 GATTTGGAGC CTCACTGATA TTG Predicted gene structure (within gDNA segment 113855 to 115567): Exon 1 114455 114957 ( 503 n); cDNA 1 503 ( 503 n); score: 0.994 MATCH C08HBa0060C12.1+ SGN-E205199+ 0.994 503 1.000 C PGS_C08HBa0060C12.1+_SGN-E205199+ (114455 114957) Alignment (genomic DNA sequence = upper lines): TTTAAATGAT CTATGGATTG CAGCCCTCAC TGTTTCAATT GTGTTCCTTA CAATTCTTTG 114514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAATGAT CTATGGATTG CAGCCCTCAC TGTTTCAATT GTGTTCCTTA CAATTCTTTG 60 GTACAAATTG AACAAGGTGG AATCCAACTT GCCACCAGGG CCTCGTGGCC TTCCGATTGT 114574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAAATTG AACAAGGTGG AATCCAACTT GCCACCAGGG CCTCGTGGCC TTCCGATTGT 120 GGGATTCTTA CCATTCCTCC GCGCCAATTT GCATCACCAG CTCACAGAGT TGTCTCAACA 114634 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GGGATTCTTA CCATTCCTCC GCGCCAATTT GCATCACCAG CTTACAGAGT TGTCTCAACA 180 GTATGGTCCA ATATACAAGT TTTGGCTAGG AGGAAAACTA TGTGTTGTGT TGAATTCACC 114694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGGTCCA ATATACAAGT TTTGGCTAGG AGGAAAACTA TGTGTTGTGT TGAATTCACC 240 ATCCTTAGCC AAAGAAGTTG TTCGCGATCA AGACTCCATT TTTGCCAACC GTGACCCTCC 114754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTTAGCC AAAGAAGTTG TTCGCGATCA AGACTCCATT TTTGCCAACC GTGACCCTCC 300 AATTGCAGGA TTAGTGGCCA CATATGGTGG ACTAGATATT GGATTTTCTC CCTATGGCTC 114814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCAGGA TTAGTGGCCA CATATGGTGG ACTAGATATT GGATTTTCTC CCTATGGCTC 360 CTACTGGCGT GATATGCGCA AACTGTTTGT AAGGGAGATG CTAAGCAACA GGAACCTTGA 114874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTGGCGT GATATGCGCA AACTGTTTGT AAGGGAGATG CTAAGCAACA GGAACCTTGA 420 ATCCTGTTAT AGCCTTCGGA GACAGGAGGT CAGAAAGACA ATCAAAAATG TGCATACCAA 114934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTGTTAT AGCCTTCGGA GACAGGAGGT CAGAAAGACA ATCAAAAATG TGCATACCAA 480 GATTGGCAGC CTCACTGATA TTG 114957 |||| | ||| |||||||||| ||| GATTTGGAGC CTCACTGATA TTG 503 hqPGS_C08HBa0060C12.1+_SGN-E205199+ (114455 114957) ******************************************************************************** EST sequence 239 -strand 765 n (File: SGN-E369504-) 1 CTTTCCATCT CGACATGGAC ATCGATGGTC CATCGAACAA TTCCTTCGTG AAGGTGAATC 61 TCCAGAAGGA GATGACTTCT TCTGGAGAAT CACCGCGAAG AAGCTACTTA AAAGCTGTTA 121 GAAATGTGGC TAAAACTGAA AAAGATGCAC AAATTAAGCT CAAACTATAT GATCCTTCAG 181 AATTCCATGT AATTAATTCT AATAAGAAGT CTAGAGTTGG GAACCCTGTT GGTTACAAAG 241 TTGTTCCTGG TGGAACTGCA GCTAGTTTAC TTGACCATAA TGATCCTCCT CAGAAAAGAG 301 CTGCTTTTAC TAATAACCAA ATTTGGGTCA CACCTTATAA TGAATCTGAG CAATGGGCTG 361 CTGGCTTGTT TGTTTATCAA AGTCAAGGTG ATGATACTCT TGCTGTTTGG TCTGACAGAG 421 ACAGGGCAAT TGAGAATAAA GACATAGTGT TGTGGTATAC ATTAGGGTTC CATCATATTC 481 CATGCCAAGA GGATTTCCCA ATAATGCCAA CAGTATCATC AAGCTTTGAG ATAAAACCAG 541 TTAATTTCTT TGAGAGCAAC CCAATTCTCA ATATTCCACC TAATTCTCCA AAGGACCTCC 601 CAATTTGCAA AGCTGCAGCT TCTGCTTGAT CATATATTAA TTGTACTATA TGTGTATGAT 661 ATGTAAAAAT AATAATGATA GCCGCGCTAG ACTTGGATTT TTCGGGTACC TTAGTCTGTA 721 ATTTTCATGA ATGAAATATA AAAGTTCACA TATGTAAAAA AAAAA Predicted gene structure (within gDNA segment 117982 to 115807): Exon 1 117372 116955 ( 418 n); cDNA 1 418 ( 418 n); score: 1.000 Intron 1 116954 116835 ( 120 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 116834 116497 ( 338 n); cDNA 419 756 ( 338 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E369504- 1.000 756 0.988 C PGS_C08HBa0060C12.1-_SGN-E369504- (117372 116955,116834 116497) Alignment (genomic DNA sequence = upper lines): CTTTCCATCT CGACATGGAC ATCGATGGTC CATCGAACAA TTCCTTCGTG AAGGTGAATC 117313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCCATCT CGACATGGAC ATCGATGGTC CATCGAACAA TTCCTTCGTG AAGGTGAATC 60 TCCAGAAGGA GATGACTTCT TCTGGAGAAT CACCGCGAAG AAGCTACTTA AAAGCTGTTA 117253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGAAGGA GATGACTTCT TCTGGAGAAT CACCGCGAAG AAGCTACTTA AAAGCTGTTA 120 GAAATGTGGC TAAAACTGAA AAAGATGCAC AAATTAAGCT CAAACTATAT GATCCTTCAG 117193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGTGGC TAAAACTGAA AAAGATGCAC AAATTAAGCT CAAACTATAT GATCCTTCAG 180 AATTCCATGT AATTAATTCT AATAAGAAGT CTAGAGTTGG GAACCCTGTT GGTTACAAAG 117133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCCATGT AATTAATTCT AATAAGAAGT CTAGAGTTGG GAACCCTGTT GGTTACAAAG 240 TTGTTCCTGG TGGAACTGCA GCTAGTTTAC TTGACCATAA TGATCCTCCT CAGAAAAGAG 117073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCCTGG TGGAACTGCA GCTAGTTTAC TTGACCATAA TGATCCTCCT CAGAAAAGAG 300 CTGCTTTTAC TAATAACCAA ATTTGGGTCA CACCTTATAA TGAATCTGAG CAATGGGCTG 117013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTTTTAC TAATAACCAA ATTTGGGTCA CACCTTATAA TGAATCTGAG CAATGGGCTG 360 CTGGCTTGTT TGTTTATCAA AGTCAAGGTG ATGATACTCT TGCTGTTTGG TCTGACAGGT 116953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTGGCTTGTT TGTTTATCAA AGTCAAGGTG ATGATACTCT TGCTGTTTGG TCTGACAG.. 418 AACTTCATCC GTTTTGATTT TGTTCGACTG GTTTTGACTT GATACAGAGT TTATTTTAAA 116893 .......... .......... .......... .......... .......... .......... 418 AAAAATAAAT AAGACTTCTA AATCTTATCG TTCTGTTTTT TTTTTTCTTT TTCTGCAGAG 116833 || .......... .......... .......... .......... .......... ........AG 420 ACAGGGCAAT TGAGAATAAA GACATAGTGT TGTGGTATAC ATTAGGGTTC CATCATATTC 116773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGCAAT TGAGAATAAA GACATAGTGT TGTGGTATAC ATTAGGGTTC CATCATATTC 480 CATGCCAAGA GGATTTCCCA ATAATGCCAA CAGTATCATC AAGCTTTGAG ATAAAACCAG 116713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCCAAGA GGATTTCCCA ATAATGCCAA CAGTATCATC AAGCTTTGAG ATAAAACCAG 540 TTAATTTCTT TGAGAGCAAC CCAATTCTCA ATATTCCACC TAATTCTCCA AAGGACCTCC 116653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTTCTT TGAGAGCAAC CCAATTCTCA ATATTCCACC TAATTCTCCA AAGGACCTCC 600 CAATTTGCAA AGCTGCAGCT TCTGCTTGAT CATATATTAA TTGTACTATA TGTGTATGAT 116593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTTGCAA AGCTGCAGCT TCTGCTTGAT CATATATTAA TTGTACTATA TGTGTATGAT 660 ATGTAAAAAT AATAATGATA GCCGCGCTAG ACTTGGATTT TTCGGGTACC TTAGTCTGTA 116533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAAAAAT AATAATGATA GCCGCGCTAG ACTTGGATTT TTCGGGTACC TTAGTCTGTA 720 ATTTTCATGA ATGAAATATA AAAGTTCACA TATGTA 116497 |||||||||| |||||||||| |||||||||| |||||| ATTTTCATGA ATGAAATATA AAAGTTCACA TATGTA 756 hqPGS_C08HBa0060C12.1-_SGN-E369504- (117372 116955,116834 116497) ******************************************************************************** EST sequence 252 -strand 635 n (File: SGN-E249147-) 1 GCTAAAACTG AAAAAGATGC ACAAATTAAG CTCAAACTAT ATGATCCTTC AGAATTCCAT 61 GTAATTAATT CTAATAAGAA GTCTAGAGTT GGGAACCCTG TTGGTTACAA AGTTGTTCCT 121 GGTGGAACTG CAGCTAGTTT ACTTGACCAT AATGATCCTC CTCAGAAAAG AGCTGCTTTT 181 ACTAATAACC AAATTTGGGT CACACCTTAT AATGAATCTG AGCAATGGGC TGCTGGCTTG 241 TTTGTTTATC AAAGTCAAGG TGATGATACT CTTGCTGTTT GGTCTGACAG AGACAGGGCA 301 ATTGAGAATA AAGACATAGT GTTGTGGTAT ACATTAGGGT TCCATCATAT TCCATGCCAA 361 GAGGATTTCC CAATAATGCC AACAGTATCA TCAAGCTTTG AGATAAAACC AGTTAATTTC 421 TTTGAGAGCA ACCCAATTCT CAATATTCCA CCTAATTCTC CAAAGGACCT CCCAATTTGC 481 AAAGCTGCAG CTTCTGCTTG ATCATATATT AATTGTACTA TATGTGTATG ATATGTAAAA 541 ATAATAATGA TAGCCGCGCT AGACTTGGAT TTTTCGGGTA CCTTAGTCTG TAATTTTCAT 601 GAATGAAATA TAAAAGTTCA CATATGTAAA AAAAA Predicted gene structure (within gDNA segment 117854 to 115827): Exon 1 117244 116955 ( 290 n); cDNA 1 290 ( 290 n); score: 1.000 Intron 1 116954 116835 ( 120 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 116834 116497 ( 338 n); cDNA 291 628 ( 338 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E249147- 1.000 628 0.989 C PGS_C08HBa0060C12.1-_SGN-E249147- (117244 116955,116834 116497) Alignment (genomic DNA sequence = upper lines): GCTAAAACTG AAAAAGATGC ACAAATTAAG CTCAAACTAT ATGATCCTTC AGAATTCCAT 117185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAAAACTG AAAAAGATGC ACAAATTAAG CTCAAACTAT ATGATCCTTC AGAATTCCAT 60 GTAATTAATT CTAATAAGAA GTCTAGAGTT GGGAACCCTG TTGGTTACAA AGTTGTTCCT 117125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATTAATT CTAATAAGAA GTCTAGAGTT GGGAACCCTG TTGGTTACAA AGTTGTTCCT 120 GGTGGAACTG CAGCTAGTTT ACTTGACCAT AATGATCCTC CTCAGAAAAG AGCTGCTTTT 117065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGAACTG CAGCTAGTTT ACTTGACCAT AATGATCCTC CTCAGAAAAG AGCTGCTTTT 180 ACTAATAACC AAATTTGGGT CACACCTTAT AATGAATCTG AGCAATGGGC TGCTGGCTTG 117005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAATAACC AAATTTGGGT CACACCTTAT AATGAATCTG AGCAATGGGC TGCTGGCTTG 240 TTTGTTTATC AAAGTCAAGG TGATGATACT CTTGCTGTTT GGTCTGACAG GTAACTTCAT 116945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTTATC AAAGTCAAGG TGATGATACT CTTGCTGTTT GGTCTGACAG .......... 290 CCGTTTTGAT TTTGTTCGAC TGGTTTTGAC TTGATACAGA GTTTATTTTA AAAAAAATAA 116885 .......... .......... .......... .......... .......... .......... 290 ATAAGACTTC TAAATCTTAT CGTTCTGTTT TTTTTTTTCT TTTTCTGCAG AGACAGGGCA 116825 |||||||||| .......... .......... .......... .......... .......... AGACAGGGCA 300 ATTGAGAATA AAGACATAGT GTTGTGGTAT ACATTAGGGT TCCATCATAT TCCATGCCAA 116765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAGAATA AAGACATAGT GTTGTGGTAT ACATTAGGGT TCCATCATAT TCCATGCCAA 360 GAGGATTTCC CAATAATGCC AACAGTATCA TCAAGCTTTG AGATAAAACC AGTTAATTTC 116705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGATTTCC CAATAATGCC AACAGTATCA TCAAGCTTTG AGATAAAACC AGTTAATTTC 420 TTTGAGAGCA ACCCAATTCT CAATATTCCA CCTAATTCTC CAAAGGACCT CCCAATTTGC 116645 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGAGCA ACCCAATTCT CAATATTCCA CCTAATTCTC CAAAGGACCT CCCAATTTGC 480 AAAGCTGCAG CTTCTGCTTG ATCATATATT AATTGTACTA TATGTGTATG ATATGTAAAA 116585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTGCAG CTTCTGCTTG ATCATATATT AATTGTACTA TATGTGTATG ATATGTAAAA 540 ATAATAATGA TAGCCGCGCT AGACTTGGAT TTTTCGGGTA CCTTAGTCTG TAATTTTCAT 116525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATAATGA TAGCCGCGCT AGACTTGGAT TTTTCGGGTA CCTTAGTCTG TAATTTTCAT 600 GAATGAAATA TAAAAGTTCA CATATGTA 116497 |||||||||| |||||||||| |||||||| GAATGAAATA TAAAAGTTCA CATATGTA 628 hqPGS_C08HBa0060C12.1-_SGN-E249147- (117244 116955,116834 116497) ******************************************************************************** EST sequence 76 -strand 725 n (File: SGN-E550529-) 1 AGTAGGAGTC ATCCATGATC ACTATGTAAC TTTCCATCTC GACATGGACA TCGATGGTCC 61 ATCGAACAAT TCCTTCGTGA AGGTGAATCT CCAGAAGGAG ATGACTTCTT CTGGAGAATC 121 ACCGCGAAGA AGCTACTTAA AAGCTGTGAG AAATGTGGCT AAAACTGAAA AAGATGCACA 181 AATTAAGCTC AAACTATATG ATCCTTCAGA ATTCCATGTA ATTAATTCTA ATAAGAAGTC 241 TAGAGTTGGG AACCCTGTTG GTTACAAAGT TGTTCCTGGT GGAACTGCAG CTAGTTTACT 301 TGACCATAAT GATCCTCCTC AGAAAAGAGC TGCTTTTACT AATAACCAAA TTTGGGTCAC 361 ACCTTATAAT GAATCTGAGC AATGGGCTGC TGGCTTGTTT GTTTATCAAA GTCAAGGTGA 421 TGATACTCTT GCTGTTTGGT CTGACAGAGA CAGGGCAATT GAGAATAAAG ACATAGTGTT 481 GTGGTATACA TTAGGGTTCC ATCATATTCC ATGCCAAGAG GATTTCCCAA TAATGCCAAC 541 AGTATCATCA AGCTTTGAGA TAAAACCAGT TAATTTCTTT GAGAGCAACC CAATTCTCAA 601 TATTCCACCT AATTCTCCAA AGGACCTCCC AATTTGCAAA GCTGCAGCTT CTGCTTGATC 661 ATATATTAAT TGTACTATAT GTGTATGATA TGTAAAAATA ATAATGAGAA CCGCGCTAGA 721 CTTGG Predicted gene structure (within gDNA segment 118011 to 115795): Exon 1 117401 116955 ( 447 n); cDNA 1 447 ( 447 n); score: 0.998 Intron 1 116954 116835 ( 120 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 116834 116557 ( 278 n); cDNA 448 725 ( 278 n); score: 0.993 MATCH C08HBa0060C12.1- SGN-E550529- 0.996 725 1.000 C PGS_C08HBa0060C12.1-_SGN-E550529- (117401 116955,116834 116557) Alignment (genomic DNA sequence = upper lines): AGTAGGAGTC ATCCATGATC ACTATGTAAC TTTCCATCTC GACATGGACA TCGATGGTCC 117342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAGGAGTC ATCCATGATC ACTATGTAAC TTTCCATCTC GACATGGACA TCGATGGTCC 60 ATCGAACAAT TCCTTCGTGA AGGTGAATCT CCAGAAGGAG ATGACTTCTT CTGGAGAATC 117282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGAACAAT TCCTTCGTGA AGGTGAATCT CCAGAAGGAG ATGACTTCTT CTGGAGAATC 120 ACCGCGAAGA AGCTACTTAA AAGCTGTTAG AAATGTGGCT AAAACTGAAA AAGATGCACA 117222 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ACCGCGAAGA AGCTACTTAA AAGCTGTGAG AAATGTGGCT AAAACTGAAA AAGATGCACA 180 AATTAAGCTC AAACTATATG ATCCTTCAGA ATTCCATGTA ATTAATTCTA ATAAGAAGTC 117162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTAAGCTC AAACTATATG ATCCTTCAGA ATTCCATGTA ATTAATTCTA ATAAGAAGTC 240 TAGAGTTGGG AACCCTGTTG GTTACAAAGT TGTTCCTGGT GGAACTGCAG CTAGTTTACT 117102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTTGGG AACCCTGTTG GTTACAAAGT TGTTCCTGGT GGAACTGCAG CTAGTTTACT 300 TGACCATAAT GATCCTCCTC AGAAAAGAGC TGCTTTTACT AATAACCAAA TTTGGGTCAC 117042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCATAAT GATCCTCCTC AGAAAAGAGC TGCTTTTACT AATAACCAAA TTTGGGTCAC 360 ACCTTATAAT GAATCTGAGC AATGGGCTGC TGGCTTGTTT GTTTATCAAA GTCAAGGTGA 116982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTATAAT GAATCTGAGC AATGGGCTGC TGGCTTGTTT GTTTATCAAA GTCAAGGTGA 420 TGATACTCTT GCTGTTTGGT CTGACAGGTA ACTTCATCCG TTTTGATTTT GTTCGACTGG 116922 |||||||||| |||||||||| ||||||| TGATACTCTT GCTGTTTGGT CTGACAG... .......... .......... .......... 447 TTTTGACTTG ATACAGAGTT TATTTTAAAA AAAATAAATA AGACTTCTAA ATCTTATCGT 116862 .......... .......... .......... .......... .......... .......... 447 TCTGTTTTTT TTTTTCTTTT TCTGCAGAGA CAGGGCAATT GAGAATAAAG ACATAGTGTT 116802 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGA CAGGGCAATT GAGAATAAAG ACATAGTGTT 480 GTGGTATACA TTAGGGTTCC ATCATATTCC ATGCCAAGAG GATTTCCCAA TAATGCCAAC 116742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTATACA TTAGGGTTCC ATCATATTCC ATGCCAAGAG GATTTCCCAA TAATGCCAAC 540 AGTATCATCA AGCTTTGAGA TAAAACCAGT TAATTTCTTT GAGAGCAACC CAATTCTCAA 116682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATCATCA AGCTTTGAGA TAAAACCAGT TAATTTCTTT GAGAGCAACC CAATTCTCAA 600 TATTCCACCT AATTCTCCAA AGGACCTCCC AATTTGCAAA GCTGCAGCTT CTGCTTGATC 116622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCCACCT AATTCTCCAA AGGACCTCCC AATTTGCAAA GCTGCAGCTT CTGCTTGATC 660 ATATATTAAT TGTACTATAT GTGTATGATA TGTAAAAATA ATAATGATAG CCGCGCTAGA 116562 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| ATATATTAAT TGTACTATAT GTGTATGATA TGTAAAAATA ATAATGAGAA CCGCGCTAGA 720 CTTGG 116557 ||||| CTTGG 725 hqPGS_C08HBa0060C12.1-_SGN-E550529- (117401 116955,116834 116557) ******************************************************************************** EST sequence 334 +strand 626 n (File: SGN-E316045+) 1 TCCCTATGTG AACATGAATG AAGTAAACCA AAATGAGTAT CTTTATGGCA CTCTCTTATC 61 TGAAAACATA GTAGGAGTCA TCCATGATCA CTATGTAACT TTCCATCTCG ACATGGACAT 121 CGATGGTCCA TCGAACAATT CCTTCGTGAA GGTGAATCTC CAGAAGGAGA TGACTTCTTC 181 TGGAGAATCA CCGCGAAGAA GCTACTTAAA AGCTGTTAGA AATGTGGCTA AAACTGAAAA 241 AGATGCACAA ATTAAGCTCA AACTATATGA TCCTTCAGAA TTCCATGTAA TTAATTCTAA 301 TAAGAAGTCT AGAGTTGGGA ACCCTGTTGG TTACAAAGTT GTTCCTGGTG GAACTGCAGC 361 TAGTTTACTT GACCATAATG ATCCTCCTCA GAAAAGAGCT GCTTTTACTA ATAACCAAAT 421 TTGGGTCACA CCTTATAATG AATCTGAGCA ATGGGCTGCT GGCTTGTTTG TTTATCAAAG 481 TCAAGGTGAT GATACTCTTG CTGTTTGGTC TGACAGAGAC AGGGCAATTG AGAATAAAGA 541 CATAGTGGTG TGGTATACAT TAAGGTTCCA TCATATTCCA TGCCAAGAAG ATTTCCCAAT 601 AATGCCAACA GTATCATCAA GCTTTG Predicted gene structure (within gDNA segment 118070 to 116115): Exon 1 117470 116955 ( 516 n); cDNA 1 516 ( 516 n); score: 1.000 Intron 1 116954 116835 ( 120 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 0.96) Exon 2 116834 116725 ( 110 n); cDNA 517 626 ( 110 n); score: 0.973 MATCH C08HBa0060C12.1- SGN-E316045+ 0.995 626 1.000 C PGS_C08HBa0060C12.1-_SGN-E316045+ (117470 116955,116834 116725) Alignment (genomic DNA sequence = upper lines): TCCCTATGTG AACATGAATG AAGTAAACCA AAATGAGTAT CTTTATGGCA CTCTCTTATC 117411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTATGTG AACATGAATG AAGTAAACCA AAATGAGTAT CTTTATGGCA CTCTCTTATC 60 TGAAAACATA GTAGGAGTCA TCCATGATCA CTATGTAACT TTCCATCTCG ACATGGACAT 117351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAACATA GTAGGAGTCA TCCATGATCA CTATGTAACT TTCCATCTCG ACATGGACAT 120 CGATGGTCCA TCGAACAATT CCTTCGTGAA GGTGAATCTC CAGAAGGAGA TGACTTCTTC 117291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATGGTCCA TCGAACAATT CCTTCGTGAA GGTGAATCTC CAGAAGGAGA TGACTTCTTC 180 TGGAGAATCA CCGCGAAGAA GCTACTTAAA AGCTGTTAGA AATGTGGCTA AAACTGAAAA 117231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGAATCA CCGCGAAGAA GCTACTTAAA AGCTGTTAGA AATGTGGCTA AAACTGAAAA 240 AGATGCACAA ATTAAGCTCA AACTATATGA TCCTTCAGAA TTCCATGTAA TTAATTCTAA 117171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCACAA ATTAAGCTCA AACTATATGA TCCTTCAGAA TTCCATGTAA TTAATTCTAA 300 TAAGAAGTCT AGAGTTGGGA ACCCTGTTGG TTACAAAGTT GTTCCTGGTG GAACTGCAGC 117111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAAGTCT AGAGTTGGGA ACCCTGTTGG TTACAAAGTT GTTCCTGGTG GAACTGCAGC 360 TAGTTTACTT GACCATAATG ATCCTCCTCA GAAAAGAGCT GCTTTTACTA ATAACCAAAT 117051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTTACTT GACCATAATG ATCCTCCTCA GAAAAGAGCT GCTTTTACTA ATAACCAAAT 420 TTGGGTCACA CCTTATAATG AATCTGAGCA ATGGGCTGCT GGCTTGTTTG TTTATCAAAG 116991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGTCACA CCTTATAATG AATCTGAGCA ATGGGCTGCT GGCTTGTTTG TTTATCAAAG 480 TCAAGGTGAT GATACTCTTG CTGTTTGGTC TGACAGGTAA CTTCATCCGT TTTGATTTTG 116931 |||||||||| |||||||||| |||||||||| |||||| TCAAGGTGAT GATACTCTTG CTGTTTGGTC TGACAG.... .......... .......... 516 TTCGACTGGT TTTGACTTGA TACAGAGTTT ATTTTAAAAA AAATAAATAA GACTTCTAAA 116871 .......... .......... .......... .......... .......... .......... 516 TCTTATCGTT CTGTTTTTTT TTTTCTTTTT CTGCAGAGAC AGGGCAATTG AGAATAAAGA 116811 |||| |||||||||| |||||||||| .......... .......... .......... ......AGAC AGGGCAATTG AGAATAAAGA 540 CATAGTGTTG TGGTATACAT TAGGGTTCCA TCATATTCCA TGCCAAGAGG ATTTCCCAAT 116751 ||||||| || |||||||||| || ||||||| |||||||||| |||||||| | |||||||||| CATAGTGGTG TGGTATACAT TAAGGTTCCA TCATATTCCA TGCCAAGAAG ATTTCCCAAT 600 AATGCCAACA GTATCATCAA GCTTTG 116725 |||||||||| |||||||||| |||||| AATGCCAACA GTATCATCAA GCTTTG 626 hqPGS_C08HBa0060C12.1-_SGN-E316045+ (117470 116955,116834 116725) ******************************************************************************** EST sequence 319 +strand 276 n (File: SGN-E292308+) 1 TTTTTTTTTT TTTGGATTTT TCGGGTACCT TAGTCTGTAA TTTTCATGAA TGAAATATAA 61 AAGTTCACAT ATGTACTATC ATTTTATTTT AAATAATACA TTGTATACTA AATACACTCA 121 TGCTACTCCC CTTGTAGTTT CTTGATTTTA CTGATATAGA TCTAAATTTG GTAACTTGGG 181 AGTAGGGATA GCAAATAGCC TCTTACTTTT CTTGATGACA AGTCCAAATC CCTCTGAAAG 241 ATCAACGTTT TCGCCCTCAG GGAGTTTCCA ATCAAA Predicted gene structure (within gDNA segment 117270 to 115686): Exon 1 116560 116296 ( 265 n); cDNA 12 276 ( 265 n); score: 1.000 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E292308+ 1.000 265 0.960 C PGS_C08HBa0060C12.1-_SGN-E292308+ (116560 116296) Alignment (genomic DNA sequence = upper lines): TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 116501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 71 TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 116441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 131 TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 116381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 191 CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 116321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 251 CGCCCTCAGG GAGTTTCCAA TCAAA 116296 |||||||||| |||||||||| ||||| CGCCCTCAGG GAGTTTCCAA TCAAA 276 hqPGS_C08HBa0060C12.1-_SGN-E292308+ (116560 116296) ******************************************************************************** EST sequence 346 +strand 276 n (File: SGN-E373558+) 1 TTTTTTTTTT TTTGGATTTT TCGGGTACCT TAGTCTGTAA TTTTCATGAA TGAAATATAA 61 AAGTTCACAT ATGTACTATC ATTTTATTTT AAATAATACA TTGTATACTA AATACACTCA 121 TGCTACTCCC CTTGTAGTTT CTTGATTTTA CTGATATAGA TCTAAATTTG GTAACTTGGG 181 AGTAGGGATA GCAAATAGCC TCTTACTTTT CTTGATGACA AGTCCAAATC CCTCTGAAAG 241 ATCAACGTTT TCGCCCTCAG GGAGTTTCCA ATCAAA Predicted gene structure (within gDNA segment 117270 to 115686): Exon 1 116560 116296 ( 265 n); cDNA 12 276 ( 265 n); score: 1.000 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E373558+ 1.000 265 0.960 C PGS_C08HBa0060C12.1-_SGN-E373558+ (116560 116296) Alignment (genomic DNA sequence = upper lines): TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 116501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 71 TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 116441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 131 TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 116381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 191 CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 116321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 251 CGCCCTCAGG GAGTTTCCAA TCAAA 116296 |||||||||| |||||||||| ||||| CGCCCTCAGG GAGTTTCCAA TCAAA 276 hqPGS_C08HBa0060C12.1-_SGN-E373558+ (116560 116296) ******************************************************************************** EST sequence 29 -strand 276 n (File: SGN-E292126-) 1 TTTTTTTTTT TTTTGGATTT TTCGGGTACC TTAGTCTGTA ATTTTCATGA ATGAAATATA 61 AAAGTTCACA TATGTACTAT CATTTTATTT TAAATAATAC ATTGTATACT AAATACACTC 121 ATGCTACTCC CCTTGTAGTT TCTTGATTTT ACTGATATAG ATCTAAATTT GGTAACTTGG 181 GAGTAGGGAT AGCAAATAGC CTCTTACTTT TCTTGATGAC AAGTCCAAAT CCCTCTGAAA 241 GATCAACGTT TTCGCCCTCA GGGAGTTTCC AATCAA Predicted gene structure (within gDNA segment 117290 to 115697): Exon 1 116560 116297 ( 264 n); cDNA 13 276 ( 264 n); score: 1.000 PPA cDNA 12 1 MATCH C08HBa0060C12.1- SGN-E292126- 1.000 264 0.957 C PGS_C08HBa0060C12.1-_SGN-E292126- (116560 116297) Alignment (genomic DNA sequence = upper lines): TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 116501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 72 TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 116441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 132 TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 116381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 192 CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 116321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 252 CGCCCTCAGG GAGTTTCCAA TCAA 116297 |||||||||| |||||||||| |||| CGCCCTCAGG GAGTTTCCAA TCAA 276 hqPGS_C08HBa0060C12.1-_SGN-E292126- (116560 116297) ******************************************************************************** EST sequence 70 -strand 276 n (File: SGN-E373559-) 1 TTTTTTTTTT TTTTGGATTT TTCGGGTACC TTAGTCTGTA ATTTTCATGA ATGAAATATA 61 AAAGTTCACA TATGTACTAT CATTTTATTT TAAATAATAC ATTGTATACT AAATACACTC 121 ATGCTACTCC CCTTGTAGTT TCTTGATTTT ACTGATATAG ATCTAAATTT GGTAACTTGG 181 GAGTAGGGAT AGCAAATAGC CTCTTACTTT TCTTGATGAC AAGTCCAAAT CCCTCTGAAA 241 GATCAACGTT TTCGCCCTCA GGGAGTTTCC AATCAA Predicted gene structure (within gDNA segment 117290 to 115697): Exon 1 116560 116297 ( 264 n); cDNA 13 276 ( 264 n); score: 1.000 PPA cDNA 12 1 MATCH C08HBa0060C12.1- SGN-E373559- 1.000 264 0.957 C PGS_C08HBa0060C12.1-_SGN-E373559- (116560 116297) Alignment (genomic DNA sequence = upper lines): TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 116501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATTTTT CGGGTACCTT AGTCTGTAAT TTTCATGAAT GAAATATAAA AGTTCACATA 72 TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 116441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTATCA TTTTATTTTA AATAATACAT TGTATACTAA ATACACTCAT GCTACTCCCC 132 TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 116381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTAGTTTC TTGATTTTAC TGATATAGAT CTAAATTTGG TAACTTGGGA GTAGGGATAG 192 CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 116321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATAGCCT CTTACTTTTC TTGATGACAA GTCCAAATCC CTCTGAAAGA TCAACGTTTT 252 CGCCCTCAGG GAGTTTCCAA TCAA 116297 |||||||||| |||||||||| |||| CGCCCTCAGG GAGTTTCCAA TCAA 276 hqPGS_C08HBa0060C12.1-_SGN-E373559- (116560 116297) ******************************************************************************** EST sequence 215 -strand 191 n (File: SGN-E398150-) 1 ATTTTCCACT TTATTCTCCA AAGGCCCTCC CAATTTGCAA AGCTGCAGCT TCTGCTTGAT 61 CATATATTAA TTGTACTATA TGTGTATGAT AGGTAAAAAT AATAATGATA GCCGCGCTAG 121 ACTTGGATTT TTCGGGTACC TTAGTCTGTA ATTTTCAGGA AGGAAATATA AAAGTTCACA 181 TAAAAAAAAA A Predicted gene structure (within gDNA segment 117517 to 115811): Exon 1 116682 116501 ( 182 n); cDNA 1 182 ( 182 n); score: 0.962 MATCH C08HBa0060C12.1- SGN-E398150- 0.962 182 0.953 C PGS_C08HBa0060C12.1-_SGN-E398150- (116682 116501) Alignment (genomic DNA sequence = upper lines): ATATTCCACC TAATTCTCCA AAGGACCTCC CAATTTGCAA AGCTGCAGCT TCTGCTTGAT 116623 || |||||| | |||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ATTTTCCACT TTATTCTCCA AAGGCCCTCC CAATTTGCAA AGCTGCAGCT TCTGCTTGAT 60 CATATATTAA TTGTACTATA TGTGTATGAT ATGTAAAAAT AATAATGATA GCCGCGCTAG 116563 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CATATATTAA TTGTACTATA TGTGTATGAT AGGTAAAAAT AATAATGATA GCCGCGCTAG 120 ACTTGGATTT TTCGGGTACC TTAGTCTGTA ATTTTCATGA ATGAAATATA AAAGTTCACA 116503 |||||||||| |||||||||| |||||||||| ||||||| || | |||||||| |||||||||| ACTTGGATTT TTCGGGTACC TTAGTCTGTA ATTTTCAGGA AGGAAATATA AAAGTTCACA 180 TA 116501 || TA 182 hqPGS_C08HBa0060C12.1-_SGN-E398150- (116682 116501) ******************************************************************************** EST sequence 370 +strand 487 n (File: SGN-E243063+) 1 TGCAACTTTG GACAGATACG AGAAGTAAGG CCAAAGGTGA CGTTAGTGGT GAGAATGGCA 61 GCGTCAGTAG CAAATTATGA TTATATTGTC GATTGGGAGT TTCAGAACGA TGGACTTATT 121 CGACCTAAGG TTGGACTAAG TGGAATATTG ATGGTGAAAG GCTCTCCCTA TGTGAACATG 181 AATGAAGTAA ACCAAAATGA GTATCTTTAT GGCACTCTCT TATCTGAAAA CATAGTAGGA 241 GTCATCCATG ATCACTATGT AACTTTCCAT CTCGACATGG ACATCGATGG TCCATCGAAC 301 AATTCCTTCG TGAAGGTGAA TCTCCAGAAG GAGATGACTT CTTCTGGAGA ATCACCGCGA 361 AGAAGCTACT TAAAAGCTGT TAGAAATGTG GCTAAAACTG AAAAAGATGC ACAAATTAAG 421 CTCAAACTAT ATGATCCTTC AGAATTCCAT GTAATTAATT CTAATAAGAA GTCTAGAGTT 481 GGGAACC Predicted gene structure (within gDNA segment 119563 to 116538): Exon 1 118963 118835 ( 129 n); cDNA 1 129 ( 129 n); score: 1.000 Intron 1 118834 117506 (1329 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 117505 117148 ( 358 n); cDNA 130 487 ( 358 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E243063+ 1.000 487 1.000 C PGS_C08HBa0060C12.1-_SGN-E243063+ (118963 118835,117505 117148) Alignment (genomic DNA sequence = upper lines): TGCAACTTTG GACAGATACG AGAAGTAAGG CCAAAGGTGA CGTTAGTGGT GAGAATGGCA 118904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAACTTTG GACAGATACG AGAAGTAAGG CCAAAGGTGA CGTTAGTGGT GAGAATGGCA 60 GCGTCAGTAG CAAATTATGA TTATATTGTC GATTGGGAGT TTCAGAACGA TGGACTTATT 118844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTCAGTAG CAAATTATGA TTATATTGTC GATTGGGAGT TTCAGAACGA TGGACTTATT 120 CGACCTAAGG TTAGCACAGC ATTCATTGTT CGTTTCAATT TACGTAAATG TTATTTTAAA 118784 ||||||||| CGACCTAAG. .......... .......... .......... .......... .......... 129 TTATTATTTT ATTGGGATAT TTGATCAAAA ACAAATAATA GTAGACATTT TATAGGATTG 118724 .......... .......... .......... .......... .......... .......... 129 TAAGTTAAAT ATTAATTTTT TTACTTAAAT ATAGAAAAAT ATTATTTCTA TAAAAAATTG 118664 .......... .......... .......... .......... .......... .......... 129 ATTTAAAATA ATTGATTGTC ACATAATTTG GTTATCTATA TTCGCACTGC ATAGTTCTAA 118604 .......... .......... .......... .......... .......... .......... 129 TGATTAGTCC TTCCGTTTTA TTTTACCCGA CCATGTTGAT TGATATTATT TTTAAGAAAG 118544 .......... .......... .......... .......... .......... .......... 129 TATTAAATAA AAAATTATTA ATTAAATTAG CTTTATTAAT TATACTTTGA AAATAAAAGT 118484 .......... .......... .......... .......... .......... .......... 129 TTAACTACTA ATACTATATA AAATCATTTA ATGGCAAGGT TAGTATGAGA AAGAAAATGA 118424 .......... .......... .......... .......... .......... .......... 129 TAAACTTCAA TCGCTTTTCT AAATTGAATA AGTAGAATAA AATATCTGTT TTTAATATAT 118364 .......... .......... .......... .......... .......... .......... 129 AGGAATCAAT TAGTTTGATA CATTATTTTG TTTTTTTTGG CTTTTAGTAA TTAATTTTTT 118304 .......... .......... .......... .......... .......... .......... 129 ATCTACTAGT GGAAGCATTT ATTTTTTTAT ATTTATTAGA TCTAACATCC AACAGCCGAT 118244 .......... .......... .......... .......... .......... .......... 129 CATTTATTTA TTTTTTCAAT TTCAAATTAT TAACATAAAT ATTCCCACAT GTTTGTTAAG 118184 .......... .......... .......... .......... .......... .......... 129 TTAAACATAA ATAAATCTTA TTCTTCTTAT TCTTTTATCT ACTGCTTTTC AAATACAGTA 118124 .......... .......... .......... .......... .......... .......... 129 TACAAGTCGG ATCCCACAAA GACTTGGGAA CACGAGCCCG TAGAATATTT ATAATTGGAA 118064 .......... .......... .......... .......... .......... .......... 129 AGTGTTAAAT GGCCACAAAA TTAAAAAAAT TATATTTTTT TATTTTGAAA TAAATTAATT 118004 .......... .......... .......... .......... .......... .......... 129 TTTTTCTTCA TTTTTTAGTT AAAAAGATAT TAAAATTAAA AGAATAATTT TTTTTTAAAG 117944 .......... .......... .......... .......... .......... .......... 129 GTGAAATAAC ATAGAAAAAA TATCATTCTG ATCAAATTCT GACTAAATTT TCTTGCGGAA 117884 .......... .......... .......... .......... .......... .......... 129 AAGATTCTTC CATAACAATA ATCACCAATT CACATCAAGT TCTTTTTCCT CCTTGGAGGG 117824 .......... .......... .......... .......... .......... .......... 129 GTTGGGGGTG GGGTTAGGGG TTGGTCATTA GTCACATTTC AATATCAATT CCAAGTTGAA 117764 .......... .......... .......... .......... .......... .......... 129 TTTTAGATTC TTGAGCTTAT GCACATTGAT TAATTTTTAA GGAGTGTTAT TTTTTACCTC 117704 .......... .......... .......... .......... .......... .......... 129 TCATAAGCAC AGGAAACTAG TAATTTTGAT CCACATGAGA AAGGTTAAAT CGATAGAAAT 117644 .......... .......... .......... .......... .......... .......... 129 AAATTACATA ATGTTTTTAC TTCTACCTGA ATTGAACATG ATACCTCATG ATTATTCAAC 117584 .......... .......... .......... .......... .......... .......... 129 TGACTTCATT TATCGTTAGT CTAAGATTCT TTTGACATTA TTTCTAAAGA TTCTTTTATT 117524 .......... .......... .......... .......... .......... .......... 129 TGTTTTGTTG TTATATAGGT TGGACTAAGT GGAATATTGA TGGTGAAAGG CTCTCCCTAT 117464 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT TGGACTAAGT GGAATATTGA TGGTGAAAGG CTCTCCCTAT 171 GTGAACATGA ATGAAGTAAA CCAAAATGAG TATCTTTATG GCACTCTCTT ATCTGAAAAC 117404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAACATGA ATGAAGTAAA CCAAAATGAG TATCTTTATG GCACTCTCTT ATCTGAAAAC 231 ATAGTAGGAG TCATCCATGA TCACTATGTA ACTTTCCATC TCGACATGGA CATCGATGGT 117344 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTAGGAG TCATCCATGA TCACTATGTA ACTTTCCATC TCGACATGGA CATCGATGGT 291 CCATCGAACA ATTCCTTCGT GAAGGTGAAT CTCCAGAAGG AGATGACTTC TTCTGGAGAA 117284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCGAACA ATTCCTTCGT GAAGGTGAAT CTCCAGAAGG AGATGACTTC TTCTGGAGAA 351 TCACCGCGAA GAAGCTACTT AAAAGCTGTT AGAAATGTGG CTAAAACTGA AAAAGATGCA 117224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCGCGAA GAAGCTACTT AAAAGCTGTT AGAAATGTGG CTAAAACTGA AAAAGATGCA 411 CAAATTAAGC TCAAACTATA TGATCCTTCA GAATTCCATG TAATTAATTC TAATAAGAAG 117164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTAAGC TCAAACTATA TGATCCTTCA GAATTCCATG TAATTAATTC TAATAAGAAG 471 TCTAGAGTTG GGAACC 117148 |||||||||| |||||| TCTAGAGTTG GGAACC 487 hqPGS_C08HBa0060C12.1-_SGN-E243063+ (118963 118835,117505 117148) ******************************************************************************** EST sequence 371 +strand 337 n (File: SGN-E243064+) 1 ATACGAGAAG TAAGGCCGGG GGTGACGTTA GTGTTGAGAA TGGCACCGTC AGTAGCAAAT 61 TATGATTATA TTGTCGATTG GGAGTTTCAG AACGATGGAC TTATTCGACC TAAGGTTGGA 121 CTAAGTGGAA TATTGATGGT GAAAGGCTCT CCCTATGTGA ACATGAATGA AGTAAACCAA 181 AATGAGTATC TTTATGGCAC TCTCTTATCT GAAAACATAG TAGGAGTCAT CCATGATCAC 241 TATGTAACTT TCCATCTCGA CATGGACATC GATGGTCCAT CGAACAATTC CTTCTTGAAG 301 GTGAATCTCC TGAAGGAGAT GACTTCTTTT GGAGAAT Predicted gene structure (within gDNA segment 119962 to 116592): Exon 1 118948 118835 ( 114 n); cDNA 1 114 ( 114 n); score: 0.956 Intron 1 118834 117506 (1329 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 117505 117283 ( 223 n); cDNA 115 337 ( 223 n); score: 0.987 MATCH C08HBa0060C12.1- SGN-E243064+ 0.976 337 1.000 C PGS_C08HBa0060C12.1-_SGN-E243064+ (118948 118835,117505 117283) Alignment (genomic DNA sequence = upper lines): ATACGAGAAG TAAGGCCAAA GGTGACGTTA GTGGTGAGAA TGGCAGCGTC AGTAGCAAAT 118889 |||||||||| ||||||| |||||||||| ||| |||||| ||||| |||| |||||||||| ATACGAGAAG TAAGGCCGGG GGTGACGTTA GTGTTGAGAA TGGCACCGTC AGTAGCAAAT 60 TATGATTATA TTGTCGATTG GGAGTTTCAG AACGATGGAC TTATTCGACC TAAGGTTAGC 118829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TATGATTATA TTGTCGATTG GGAGTTTCAG AACGATGGAC TTATTCGACC TAAG...... 114 ACAGCATTCA TTGTTCGTTT CAATTTACGT AAATGTTATT TTAAATTATT ATTTTATTGG 118769 .......... .......... .......... .......... .......... .......... 114 GATATTTGAT CAAAAACAAA TAATAGTAGA CATTTTATAG GATTGTAAGT TAAATATTAA 118709 .......... .......... .......... .......... .......... .......... 114 TTTTTTTACT TAAATATAGA AAAATATTAT TTCTATAAAA AATTGATTTA AAATAATTGA 118649 .......... .......... .......... .......... .......... .......... 114 TTGTCACATA ATTTGGTTAT CTATATTCGC ACTGCATAGT TCTAATGATT AGTCCTTCCG 118589 .......... .......... .......... .......... .......... .......... 114 TTTTATTTTA CCCGACCATG TTGATTGATA TTATTTTTAA GAAAGTATTA AATAAAAAAT 118529 .......... .......... .......... .......... .......... .......... 114 TATTAATTAA ATTAGCTTTA TTAATTATAC TTTGAAAATA AAAGTTTAAC TACTAATACT 118469 .......... .......... .......... .......... .......... .......... 114 ATATAAAATC ATTTAATGGC AAGGTTAGTA TGAGAAAGAA AATGATAAAC TTCAATCGCT 118409 .......... .......... .......... .......... .......... .......... 114 TTTCTAAATT GAATAAGTAG AATAAAATAT CTGTTTTTAA TATATAGGAA TCAATTAGTT 118349 .......... .......... .......... .......... .......... .......... 114 TGATACATTA TTTTGTTTTT TTTGGCTTTT AGTAATTAAT TTTTTATCTA CTAGTGGAAG 118289 .......... .......... .......... .......... .......... .......... 114 CATTTATTTT TTTATATTTA TTAGATCTAA CATCCAACAG CCGATCATTT ATTTATTTTT 118229 .......... .......... .......... .......... .......... .......... 114 TCAATTTCAA ATTATTAACA TAAATATTCC CACATGTTTG TTAAGTTAAA CATAAATAAA 118169 .......... .......... .......... .......... .......... .......... 114 TCTTATTCTT CTTATTCTTT TATCTACTGC TTTTCAAATA CAGTATACAA GTCGGATCCC 118109 .......... .......... .......... .......... .......... .......... 114 ACAAAGACTT GGGAACACGA GCCCGTAGAA TATTTATAAT TGGAAAGTGT TAAATGGCCA 118049 .......... .......... .......... .......... .......... .......... 114 CAAAATTAAA AAAATTATAT TTTTTTATTT TGAAATAAAT TAATTTTTTT CTTCATTTTT 117989 .......... .......... .......... .......... .......... .......... 114 TAGTTAAAAA GATATTAAAA TTAAAAGAAT AATTTTTTTT TAAAGGTGAA ATAACATAGA 117929 .......... .......... .......... .......... .......... .......... 114 AAAAATATCA TTCTGATCAA ATTCTGACTA AATTTTCTTG CGGAAAAGAT TCTTCCATAA 117869 .......... .......... .......... .......... .......... .......... 114 CAATAATCAC CAATTCACAT CAAGTTCTTT TTCCTCCTTG GAGGGGTTGG GGGTGGGGTT 117809 .......... .......... .......... .......... .......... .......... 114 AGGGGTTGGT CATTAGTCAC ATTTCAATAT CAATTCCAAG TTGAATTTTA GATTCTTGAG 117749 .......... .......... .......... .......... .......... .......... 114 CTTATGCACA TTGATTAATT TTTAAGGAGT GTTATTTTTT ACCTCTCATA AGCACAGGAA 117689 .......... .......... .......... .......... .......... .......... 114 ACTAGTAATT TTGATCCACA TGAGAAAGGT TAAATCGATA GAAATAAATT ACATAATGTT 117629 .......... .......... .......... .......... .......... .......... 114 TTTACTTCTA CCTGAATTGA ACATGATACC TCATGATTAT TCAACTGACT TCATTTATCG 117569 .......... .......... .......... .......... .......... .......... 114 TTAGTCTAAG ATTCTTTTGA CATTATTTCT AAAGATTCTT TTATTTGTTT TGTTGTTATA 117509 .......... .......... .......... .......... .......... .......... 114 TAGGTTGGAC TAAGTGGAAT ATTGATGGTG AAAGGCTCTC CCTATGTGAA CATGAATGAA 117449 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTTGGAC TAAGTGGAAT ATTGATGGTG AAAGGCTCTC CCTATGTGAA CATGAATGAA 171 GTAAACCAAA ATGAGTATCT TTATGGCACT CTCTTATCTG AAAACATAGT AGGAGTCATC 117389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAACCAAA ATGAGTATCT TTATGGCACT CTCTTATCTG AAAACATAGT AGGAGTCATC 231 CATGATCACT ATGTAACTTT CCATCTCGAC ATGGACATCG ATGGTCCATC GAACAATTCC 117329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGATCACT ATGTAACTTT CCATCTCGAC ATGGACATCG ATGGTCCATC GAACAATTCC 291 TTCGTGAAGG TGAATCTCCA GAAGGAGATG ACTTCTTCTG GAGAAT 117283 ||| |||||| ||||||||| |||||||||| ||||||| || |||||| TTCTTGAAGG TGAATCTCCT GAAGGAGATG ACTTCTTTTG GAGAAT 337 hqPGS_C08HBa0060C12.1-_SGN-E243064+ (118948 118835,117505 117283) ******************************************************************************** EST sequence 390 +strand 530 n (File: SGN-E247162+) 1 TTATATCCCG GGTCATGTTT GAGGATCCGG ATACTGGGAA GATGAGGAAT GTTATGTATA 61 AAGGGTTTAC GTCGGAGTTG TTTGTACCTT ACATGGATCC ATCAGATGCA TGGTATTTTA 121 AGACCTATAT GGATGCAGGT GAATACGGGT TCGGGTTACA AGCGATGCCA CTTGACCCGT 181 TAAATGATTG TCCTCATAAT GCGTATTATA TGGATGGTGT ATTTGTGGCA GCTGATGGAA 241 CACCATATGT GCGATCCAAT ATGATTTGTG TGTTTGAAAG ATATGCTGGT GATATTGGAT 301 GGCGACATGC TGAATGTCCA ATTACTGGTT TACCGATACG AGAAGTAAGG CCAAAGGTGA 361 CGTTAGTGGT GAGAATGGCA GCGTCAGTAG CAAATTATGA TTATATTGTC GATTGGGAGT 421 TTCAGAACGA TGGACTTATT CGACCTAAGG TTGGACTAAG TGGAATATTG ATGGTGAAAG 481 GCTCTCCCTA TGTGAACATG AATGAAGTAA ACCAAAATGA GTATCTTTAT Predicted gene structure (within gDNA segment 120152 to 116815): Exon 1 119552 119218 ( 335 n); cDNA 1 335 ( 335 n); score: 0.991 Intron 1 119217 118949 ( 269 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 118948 118835 ( 114 n); cDNA 336 449 ( 114 n); score: 1.000 Intron 2 118834 117506 (1329 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 117505 117425 ( 81 n); cDNA 450 530 ( 81 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E247162+ 0.994 530 1.000 C PGS_C08HBa0060C12.1-_SGN-E247162+ (119552 119218,118948 118835,117505 117425) Alignment (genomic DNA sequence = upper lines): TTATATCCCG GGTCATGTTT GAGGATCCGG ATACGGGGAA GATGAGGAAT GTTATGTATA 119493 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TTATATCCCG GGTCATGTTT GAGGATCCGG ATACTGGGAA GATGAGGAAT GTTATGTATA 60 AAGGGTTTAC GTCGGAGTTG TTTGTACCTT ACATGGATCC ATCAGATGCA TGGTATTTTA 119433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGTTTAC GTCGGAGTTG TTTGTACCTT ACATGGATCC ATCAGATGCA TGGTATTTTA 120 AGACGTATAT GGATGCAGGT GAATACGGGT TCGGGTTACA AGCGATGCCA CTTGACCCGT 119373 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACCTATAT GGATGCAGGT GAATACGGGT TCGGGTTACA AGCGATGCCA CTTGACCCGT 180 TAAATGATTG TCCTCGTAAT GCGTATTATA TGGATGGTGT ATTTGTGGCA GCTGATGGAA 119313 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATGATTG TCCTCATAAT GCGTATTATA TGGATGGTGT ATTTGTGGCA GCTGATGGAA 240 CACCATATGT GCGATCCAAT ATGATTTGTG TGTTTGAAAG ATATGCTGGT GATATTGGAT 119253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCATATGT GCGATCCAAT ATGATTTGTG TGTTTGAAAG ATATGCTGGT GATATTGGAT 300 GGCGACATGC TGAATGTCCA ATTACTGGTT TACCGGTAAA TAGTTTCACT TTTTTTTTTT 119193 |||||||||| |||||||||| |||||||||| ||||| GGCGACATGC TGAATGTCCA ATTACTGGTT TACCG..... .......... .......... 335 TTTTTTTTTT TAATATAAAA ACAGTATATA GTACACTCAA CGTTATTCAC GGTGGAAAAA 119133 .......... .......... .......... .......... .......... .......... 335 GTAAATGATT TAAATTTGTG ATACAGTATC GAGACTGTTT GCTAATCGGG GTTTTTGTTT 119073 .......... .......... .......... .......... .......... .......... 335 TTGGATACAA AAACCAAGAA AAGTAATTTT TGTTATGTGT CAAATACATA ACAAGTGTTG 119013 .......... .......... .......... .......... .......... .......... 335 CATGACATTA TTTTCTAGTT TGATAGAATT GATTTTTGTT GGTTTTGCAT GCAACTTTGG 118953 .......... .......... .......... .......... .......... .......... 335 ACAGATACGA GAAGTAAGGC CAAAGGTGAC GTTAGTGGTG AGAATGGCAG CGTCAGTAGC 118893 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATACGA GAAGTAAGGC CAAAGGTGAC GTTAGTGGTG AGAATGGCAG CGTCAGTAGC 391 AAATTATGAT TATATTGTCG ATTGGGAGTT TCAGAACGAT GGACTTATTC GACCTAAGGT 118833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AAATTATGAT TATATTGTCG ATTGGGAGTT TCAGAACGAT GGACTTATTC GACCTAAG.. 449 TAGCACAGCA TTCATTGTTC GTTTCAATTT ACGTAAATGT TATTTTAAAT TATTATTTTA 118773 .......... .......... .......... .......... .......... .......... 449 TTGGGATATT TGATCAAAAA CAAATAATAG TAGACATTTT ATAGGATTGT AAGTTAAATA 118713 .......... .......... .......... .......... .......... .......... 449 TTAATTTTTT TACTTAAATA TAGAAAAATA TTATTTCTAT AAAAAATTGA TTTAAAATAA 118653 .......... .......... .......... .......... .......... .......... 449 TTGATTGTCA CATAATTTGG TTATCTATAT TCGCACTGCA TAGTTCTAAT GATTAGTCCT 118593 .......... .......... .......... .......... .......... .......... 449 TCCGTTTTAT TTTACCCGAC CATGTTGATT GATATTATTT TTAAGAAAGT ATTAAATAAA 118533 .......... .......... .......... .......... .......... .......... 449 AAATTATTAA TTAAATTAGC TTTATTAATT ATACTTTGAA AATAAAAGTT TAACTACTAA 118473 .......... .......... .......... .......... .......... .......... 449 TACTATATAA AATCATTTAA TGGCAAGGTT AGTATGAGAA AGAAAATGAT AAACTTCAAT 118413 .......... .......... .......... .......... .......... .......... 449 CGCTTTTCTA AATTGAATAA GTAGAATAAA ATATCTGTTT TTAATATATA GGAATCAATT 118353 .......... .......... .......... .......... .......... .......... 449 AGTTTGATAC ATTATTTTGT TTTTTTTGGC TTTTAGTAAT TAATTTTTTA TCTACTAGTG 118293 .......... .......... .......... .......... .......... .......... 449 GAAGCATTTA TTTTTTTATA TTTATTAGAT CTAACATCCA ACAGCCGATC ATTTATTTAT 118233 .......... .......... .......... .......... .......... .......... 449 TTTTTCAATT TCAAATTATT AACATAAATA TTCCCACATG TTTGTTAAGT TAAACATAAA 118173 .......... .......... .......... .......... .......... .......... 449 TAAATCTTAT TCTTCTTATT CTTTTATCTA CTGCTTTTCA AATACAGTAT ACAAGTCGGA 118113 .......... .......... .......... .......... .......... .......... 449 TCCCACAAAG ACTTGGGAAC ACGAGCCCGT AGAATATTTA TAATTGGAAA GTGTTAAATG 118053 .......... .......... .......... .......... .......... .......... 449 GCCACAAAAT TAAAAAAATT ATATTTTTTT ATTTTGAAAT AAATTAATTT TTTTCTTCAT 117993 .......... .......... .......... .......... .......... .......... 449 TTTTTAGTTA AAAAGATATT AAAATTAAAA GAATAATTTT TTTTTAAAGG TGAAATAACA 117933 .......... .......... .......... .......... .......... .......... 449 TAGAAAAAAT ATCATTCTGA TCAAATTCTG ACTAAATTTT CTTGCGGAAA AGATTCTTCC 117873 .......... .......... .......... .......... .......... .......... 449 ATAACAATAA TCACCAATTC ACATCAAGTT CTTTTTCCTC CTTGGAGGGG TTGGGGGTGG 117813 .......... .......... .......... .......... .......... .......... 449 GGTTAGGGGT TGGTCATTAG TCACATTTCA ATATCAATTC CAAGTTGAAT TTTAGATTCT 117753 .......... .......... .......... .......... .......... .......... 449 TGAGCTTATG CACATTGATT AATTTTTAAG GAGTGTTATT TTTTACCTCT CATAAGCACA 117693 .......... .......... .......... .......... .......... .......... 449 GGAAACTAGT AATTTTGATC CACATGAGAA AGGTTAAATC GATAGAAATA AATTACATAA 117633 .......... .......... .......... .......... .......... .......... 449 TGTTTTTACT TCTACCTGAA TTGAACATGA TACCTCATGA TTATTCAACT GACTTCATTT 117573 .......... .......... .......... .......... .......... .......... 449 ATCGTTAGTC TAAGATTCTT TTGACATTAT TTCTAAAGAT TCTTTTATTT GTTTTGTTGT 117513 .......... .......... .......... .......... .......... .......... 449 TATATAGGTT GGACTAAGTG GAATATTGAT GGTGAAAGGC TCTCCCTATG TGAACATGAA 117453 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTT GGACTAAGTG GAATATTGAT GGTGAAAGGC TCTCCCTATG TGAACATGAA 502 TGAAGTAAAC CAAAATGAGT ATCTTTAT 117425 |||||||||| |||||||||| |||||||| TGAAGTAAAC CAAAATGAGT ATCTTTAT 530 hqPGS_C08HBa0060C12.1-_SGN-E247162+ (119552 119218,118948 118835,117505 117425) ******************************************************************************** EST sequence 310 +strand 600 n (File: SGN-E250226+) 1 GAACAACCAA ATGGTCCAAG TTTCACTATA GAAAACAATC ATCTAGTTAA ATGGGCAAAT 61 TGGGAATTTC ACCTGAAGCC GGATCCGAGA GCCGGGGTGA TTATATCCCG GGTCATGTTT 121 GAGGATCCGG ATACGGGGAA GATGAGGAAT GTTATGTATA AAGGGTTTAC GTCGGAGTTG 181 TTTGTACCTT ACATGGATCC ATCAGATGCA TGGTATTTTA AGACGTNNNN NGGTGCAGGT 241 GAATACGGGT TCGGGTTACA AGCGATGCCA CTTGACCCGT TAAATGATTG TCCTCGTAAT 301 GCGTATTATA TGGATGGTGT ATTTGTGGCA GCTGATGGAA CACCATATGT GCGATCCAAT 361 ATGATTTGTG TGTTTGAAAG ATATGCTGGT GATATTGGAT GGCGACATGC TGAATGTCCA 421 ATTACTGGTT TACCGATACG AGAAGTAAGG CCAAAGGTGA CGTTAGTGGT GAGAATGGCA 481 GCGTCAGTAG CAAATTATGA TTATATTGTC GATTGGGAGT TTCAGAACGA TGGACTTATT 541 CGACCTAAGG TTGGACTAAG TGGAATATTG ATGGTGAAAG GCTCTCCCTA TGTGAACATG Predicted gene structure (within gDNA segment 120252 to 116845): Exon 1 119652 119218 ( 435 n); cDNA 1 435 ( 435 n); score: 0.986 Intron 1 119217 118949 ( 269 n); Pd: 1.000 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 118948 118835 ( 114 n); cDNA 436 549 ( 114 n); score: 1.000 Intron 2 118834 117506 (1329 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 117505 117455 ( 51 n); cDNA 550 600 ( 51 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E250226+ 0.990 600 1.000 C PGS_C08HBa0060C12.1-_SGN-E250226+ (119652 119218,118948 118835,117505 117455) Alignment (genomic DNA sequence = upper lines): GAACAACCAA ATGGTCCAAG TTTCACTATA GAAAACAATC ATCTAGTTAA ATGGGCAAAT 119593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAACCAA ATGGTCCAAG TTTCACTATA GAAAACAATC ATCTAGTTAA ATGGGCAAAT 60 TGGGAATTTC ACCTGAAGCC GGATCCGAGA GCCGGGGTGA TTATATCCCG GGTCATGTTT 119533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGAATTTC ACCTGAAGCC GGATCCGAGA GCCGGGGTGA TTATATCCCG GGTCATGTTT 120 GAGGATCCGG ATACGGGGAA GATGAGGAAT GTTATGTATA AAGGGTTTAC GTCGGAGTTG 119473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGATCCGG ATACGGGGAA GATGAGGAAT GTTATGTATA AAGGGTTTAC GTCGGAGTTG 180 TTTGTACCTT ACATGGATCC ATCAGATGCA TGGTATTTTA AGACGTATAT GGATGCAGGT 119413 |||||||||| |||||||||| |||||||||| |||||||||| |||||| | ||||||| TTTGTACCTT ACATGGATCC ATCAGATGCA TGGTATTTTA AGACGTNNNN NGGTGCAGGT 240 GAATACGGGT TCGGGTTACA AGCGATGCCA CTTGACCCGT TAAATGATTG TCCTCGTAAT 119353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATACGGGT TCGGGTTACA AGCGATGCCA CTTGACCCGT TAAATGATTG TCCTCGTAAT 300 GCGTATTATA TGGATGGTGT ATTTGTGGCA GCTGATGGAA CACCATATGT GCGATCCAAT 119293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTATTATA TGGATGGTGT ATTTGTGGCA GCTGATGGAA CACCATATGT GCGATCCAAT 360 ATGATTTGTG TGTTTGAAAG ATATGCTGGT GATATTGGAT GGCGACATGC TGAATGTCCA 119233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTTGTG TGTTTGAAAG ATATGCTGGT GATATTGGAT GGCGACATGC TGAATGTCCA 420 ATTACTGGTT TACCGGTAAA TAGTTTCACT TTTTTTTTTT TTTTTTTTTT TAATATAAAA 119173 |||||||||| ||||| ATTACTGGTT TACCG..... .......... .......... .......... .......... 435 ACAGTATATA GTACACTCAA CGTTATTCAC GGTGGAAAAA GTAAATGATT TAAATTTGTG 119113 .......... .......... .......... .......... .......... .......... 435 ATACAGTATC GAGACTGTTT GCTAATCGGG GTTTTTGTTT TTGGATACAA AAACCAAGAA 119053 .......... .......... .......... .......... .......... .......... 435 AAGTAATTTT TGTTATGTGT CAAATACATA ACAAGTGTTG CATGACATTA TTTTCTAGTT 118993 .......... .......... .......... .......... .......... .......... 435 TGATAGAATT GATTTTTGTT GGTTTTGCAT GCAACTTTGG ACAGATACGA GAAGTAAGGC 118933 |||||| |||||||||| .......... .......... .......... .......... ....ATACGA GAAGTAAGGC 451 CAAAGGTGAC GTTAGTGGTG AGAATGGCAG CGTCAGTAGC AAATTATGAT TATATTGTCG 118873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGGTGAC GTTAGTGGTG AGAATGGCAG CGTCAGTAGC AAATTATGAT TATATTGTCG 511 ATTGGGAGTT TCAGAACGAT GGACTTATTC GACCTAAGGT TAGCACAGCA TTCATTGTTC 118813 |||||||||| |||||||||| |||||||||| |||||||| ATTGGGAGTT TCAGAACGAT GGACTTATTC GACCTAAG.. .......... .......... 549 GTTTCAATTT ACGTAAATGT TATTTTAAAT TATTATTTTA TTGGGATATT TGATCAAAAA 118753 .......... .......... .......... .......... .......... .......... 549 CAAATAATAG TAGACATTTT ATAGGATTGT AAGTTAAATA TTAATTTTTT TACTTAAATA 118693 .......... .......... .......... .......... .......... .......... 549 TAGAAAAATA TTATTTCTAT AAAAAATTGA TTTAAAATAA TTGATTGTCA CATAATTTGG 118633 .......... .......... .......... .......... .......... .......... 549 TTATCTATAT TCGCACTGCA TAGTTCTAAT GATTAGTCCT TCCGTTTTAT TTTACCCGAC 118573 .......... .......... .......... .......... .......... .......... 549 CATGTTGATT GATATTATTT TTAAGAAAGT ATTAAATAAA AAATTATTAA TTAAATTAGC 118513 .......... .......... .......... .......... .......... .......... 549 TTTATTAATT ATACTTTGAA AATAAAAGTT TAACTACTAA TACTATATAA AATCATTTAA 118453 .......... .......... .......... .......... .......... .......... 549 TGGCAAGGTT AGTATGAGAA AGAAAATGAT AAACTTCAAT CGCTTTTCTA AATTGAATAA 118393 .......... .......... .......... .......... .......... .......... 549 GTAGAATAAA ATATCTGTTT TTAATATATA GGAATCAATT AGTTTGATAC ATTATTTTGT 118333 .......... .......... .......... .......... .......... .......... 549 TTTTTTTGGC TTTTAGTAAT TAATTTTTTA TCTACTAGTG GAAGCATTTA TTTTTTTATA 118273 .......... .......... .......... .......... .......... .......... 549 TTTATTAGAT CTAACATCCA ACAGCCGATC ATTTATTTAT TTTTTCAATT TCAAATTATT 118213 .......... .......... .......... .......... .......... .......... 549 AACATAAATA TTCCCACATG TTTGTTAAGT TAAACATAAA TAAATCTTAT TCTTCTTATT 118153 .......... .......... .......... .......... .......... .......... 549 CTTTTATCTA CTGCTTTTCA AATACAGTAT ACAAGTCGGA TCCCACAAAG ACTTGGGAAC 118093 .......... .......... .......... .......... .......... .......... 549 ACGAGCCCGT AGAATATTTA TAATTGGAAA GTGTTAAATG GCCACAAAAT TAAAAAAATT 118033 .......... .......... .......... .......... .......... .......... 549 ATATTTTTTT ATTTTGAAAT AAATTAATTT TTTTCTTCAT TTTTTAGTTA AAAAGATATT 117973 .......... .......... .......... .......... .......... .......... 549 AAAATTAAAA GAATAATTTT TTTTTAAAGG TGAAATAACA TAGAAAAAAT ATCATTCTGA 117913 .......... .......... .......... .......... .......... .......... 549 TCAAATTCTG ACTAAATTTT CTTGCGGAAA AGATTCTTCC ATAACAATAA TCACCAATTC 117853 .......... .......... .......... .......... .......... .......... 549 ACATCAAGTT CTTTTTCCTC CTTGGAGGGG TTGGGGGTGG GGTTAGGGGT TGGTCATTAG 117793 .......... .......... .......... .......... .......... .......... 549 TCACATTTCA ATATCAATTC CAAGTTGAAT TTTAGATTCT TGAGCTTATG CACATTGATT 117733 .......... .......... .......... .......... .......... .......... 549 AATTTTTAAG GAGTGTTATT TTTTACCTCT CATAAGCACA GGAAACTAGT AATTTTGATC 117673 .......... .......... .......... .......... .......... .......... 549 CACATGAGAA AGGTTAAATC GATAGAAATA AATTACATAA TGTTTTTACT TCTACCTGAA 117613 .......... .......... .......... .......... .......... .......... 549 TTGAACATGA TACCTCATGA TTATTCAACT GACTTCATTT ATCGTTAGTC TAAGATTCTT 117553 .......... .......... .......... .......... .......... .......... 549 TTGACATTAT TTCTAAAGAT TCTTTTATTT GTTTTGTTGT TATATAGGTT GGACTAAGTG 117493 ||| |||||||||| .......... .......... .......... .......... .......GTT GGACTAAGTG 562 GAATATTGAT GGTGAAAGGC TCTCCCTATG TGAACATG 117455 |||||||||| |||||||||| |||||||||| |||||||| GAATATTGAT GGTGAAAGGC TCTCCCTATG TGAACATG 600 hqPGS_C08HBa0060C12.1-_SGN-E250226+ (119652 119218,118948 118835,117505 117455) ******************************************************************************** EST sequence 393 +strand 684 n (File: SGN-E369505+) 1 CGATCCTGAC TATCGAGGAT ATGATCTCCG CCACTTCTGC CCCGTTTGCC AACTCTGATT 61 TTAACCGTTC GATTATCCAG CGTGGCGTTG ATTTGGCTGA CCTGGCATGT CTACCCGTCG 121 CTGCTGGTTG GTATGGAAAA ATCGAGGAGA AACGAAGAGT GATTAAAGTA CAGTCTTTTA 181 CATTGAAGGA CACTATCAAT TTCTATATGA GACCGATTGA AGGATTAACC GTACTTCTTG 241 ATTTAGACAC TCAACAAGTT ATTGAAATTT TCGATGAAGG AGAGAGTATA CCAATACCAA 301 AGGCCGCCAA CACAGACTAT CGCTACTCTC GTATTAAAAA AAACAAACAA AAAATAAACT 361 TACTCAAACC AATATCAATC GAACAACCAA ATGGTCCAAG TTTCACTATA GAAAACAATC 421 ATCTAGTTAA ATGGGCAAAT TGGGAATTTC ACCTGAAGCC GGATCCGAGA GCCGGGGTGA 481 TTATATCCCG GGTCATGTTT GAGGATCCGG ATACGGGGAA GATGAGGAAT GTTATGTATA 541 AAGGGTTTAC GTCGGAGTTG TTTGTACCTT ACATGGATCC ATCAGATGCA TGGTATTTTA 601 AGACGTATAT GGATGCAGGT GAATACGGGT TCGGGTTACA AGCGATGCCA CTTGACCCGT 661 TAAATGATTG TCCTCGTAAT GCGT Predicted gene structure (within gDNA segment 120711 to 118739): Exon 1 120111 119977 ( 135 n); cDNA 1 135 ( 135 n); score: 1.000 Intron 1 119976 119898 ( 79 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 119897 119349 ( 549 n); cDNA 136 684 ( 549 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E369505+ 1.000 684 1.000 C PGS_C08HBa0060C12.1-_SGN-E369505+ (120111 119977,119897 119349) Alignment (genomic DNA sequence = upper lines): CGATCCTGAC TATCGAGGAT ATGATCTCCG CCACTTCTGC CCCGTTTGCC AACTCTGATT 120052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCCTGAC TATCGAGGAT ATGATCTCCG CCACTTCTGC CCCGTTTGCC AACTCTGATT 60 TTAACCGTTC GATTATCCAG CGTGGCGTTG ATTTGGCTGA CCTGGCATGT CTACCCGTCG 119992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACCGTTC GATTATCCAG CGTGGCGTTG ATTTGGCTGA CCTGGCATGT CTACCCGTCG 120 CTGCTGGTTG GTATGGTAAG TGTCCTTAAT TCAGAAATGA GTTCATTATA TTGGTTTTTT 119932 |||||||||| ||||| CTGCTGGTTG GTATG..... .......... .......... .......... .......... 135 TTTTTGAATT TGACTAATTT AAATTTATAT TCAGGAAAAA TCGAGGAGAA ACGAAGAGTG 119872 |||||| |||||||||| |||||||||| .......... .......... .......... ....GAAAAA TCGAGGAGAA ACGAAGAGTG 161 ATTAAAGTAC AGTCTTTTAC ATTGAAGGAC ACTATCAATT TCTATATGAG ACCGATTGAA 119812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAAGTAC AGTCTTTTAC ATTGAAGGAC ACTATCAATT TCTATATGAG ACCGATTGAA 221 GGATTAACCG TACTTCTTGA TTTAGACACT CAACAAGTTA TTGAAATTTT CGATGAAGGA 119752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTAACCG TACTTCTTGA TTTAGACACT CAACAAGTTA TTGAAATTTT CGATGAAGGA 281 GAGAGTATAC CAATACCAAA GGCCGCCAAC ACAGACTATC GCTACTCTCG TATTAAAAAA 119692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGTATAC CAATACCAAA GGCCGCCAAC ACAGACTATC GCTACTCTCG TATTAAAAAA 341 AACAAACAAA AAATAAACTT ACTCAAACCA ATATCAATCG AACAACCAAA TGGTCCAAGT 119632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAACAAA AAATAAACTT ACTCAAACCA ATATCAATCG AACAACCAAA TGGTCCAAGT 401 TTCACTATAG AAAACAATCA TCTAGTTAAA TGGGCAAATT GGGAATTTCA CCTGAAGCCG 119572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACTATAG AAAACAATCA TCTAGTTAAA TGGGCAAATT GGGAATTTCA CCTGAAGCCG 461 GATCCGAGAG CCGGGGTGAT TATATCCCGG GTCATGTTTG AGGATCCGGA TACGGGGAAG 119512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCGAGAG CCGGGGTGAT TATATCCCGG GTCATGTTTG AGGATCCGGA TACGGGGAAG 521 ATGAGGAATG TTATGTATAA AGGGTTTACG TCGGAGTTGT TTGTACCTTA CATGGATCCA 119452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGGAATG TTATGTATAA AGGGTTTACG TCGGAGTTGT TTGTACCTTA CATGGATCCA 581 TCAGATGCAT GGTATTTTAA GACGTATATG GATGCAGGTG AATACGGGTT CGGGTTACAA 119392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGATGCAT GGTATTTTAA GACGTATATG GATGCAGGTG AATACGGGTT CGGGTTACAA 641 GCGATGCCAC TTGACCCGTT AAATGATTGT CCTCGTAATG CGT 119349 |||||||||| |||||||||| |||||||||| |||||||||| ||| GCGATGCCAC TTGACCCGTT AAATGATTGT CCTCGTAATG CGT 684 hqPGS_C08HBa0060C12.1-_SGN-E369505+ (120111 119977,119897 119349) ******************************************************************************** EST sequence 381 +strand 500 n (File: SGN-E246163+) 1 CGATCCTGAC TATCGAGGAT ATGATCTCCG CCACTTCTGC CCCGTTTGCC AACTCTGATT 61 TTAACCGTTC GATTATCCAG CGTGGCGTTG ATTTGGCTGA CCTGGCATGT CTACCCGTCG 121 CTGCTGGTTG GTATGGAAAA ATCGAGGAGA AACGAAGAGT GATTAAAGTA CAGTCTTTTA 181 CATTGAAGGA CACTATCAAT TTCTATATGA GACCGATTGA AGGATTAACC GTACTTCTTG 241 ATTTAGACAC TCAACAAGTT ATTGAAATTT TCGATGAAGG AGAGAGTATA CCAATACCAA 301 AGGCCGCCAA CACAGACTAT CGCTACTCTC GTATTAAAAA AAACAAACAA AAAATAAACT 361 TACTCAAACC AATATCAATC GAACAACCAA ATGGTCCAAG TTTCACTATA GAAAACAATC 421 ATCTAGTTAA ATGGGCAAAT TGGGAATTTC ACCTGAAGCC GGATCCGAGA GCCGGGGTGA 481 TTATATCCCG GGTCATGTTT Predicted gene structure (within gDNA segment 120711 to 118923): Exon 1 120111 119977 ( 135 n); cDNA 1 135 ( 135 n); score: 1.000 Intron 1 119976 119898 ( 79 n); Pd: 0.999 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 119897 119533 ( 365 n); cDNA 136 500 ( 365 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E246163+ 1.000 500 1.000 C PGS_C08HBa0060C12.1-_SGN-E246163+ (120111 119977,119897 119533) Alignment (genomic DNA sequence = upper lines): CGATCCTGAC TATCGAGGAT ATGATCTCCG CCACTTCTGC CCCGTTTGCC AACTCTGATT 120052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCCTGAC TATCGAGGAT ATGATCTCCG CCACTTCTGC CCCGTTTGCC AACTCTGATT 60 TTAACCGTTC GATTATCCAG CGTGGCGTTG ATTTGGCTGA CCTGGCATGT CTACCCGTCG 119992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACCGTTC GATTATCCAG CGTGGCGTTG ATTTGGCTGA CCTGGCATGT CTACCCGTCG 120 CTGCTGGTTG GTATGGTAAG TGTCCTTAAT TCAGAAATGA GTTCATTATA TTGGTTTTTT 119932 |||||||||| ||||| CTGCTGGTTG GTATG..... .......... .......... .......... .......... 135 TTTTTGAATT TGACTAATTT AAATTTATAT TCAGGAAAAA TCGAGGAGAA ACGAAGAGTG 119872 |||||| |||||||||| |||||||||| .......... .......... .......... ....GAAAAA TCGAGGAGAA ACGAAGAGTG 161 ATTAAAGTAC AGTCTTTTAC ATTGAAGGAC ACTATCAATT TCTATATGAG ACCGATTGAA 119812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAAGTAC AGTCTTTTAC ATTGAAGGAC ACTATCAATT TCTATATGAG ACCGATTGAA 221 GGATTAACCG TACTTCTTGA TTTAGACACT CAACAAGTTA TTGAAATTTT CGATGAAGGA 119752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTAACCG TACTTCTTGA TTTAGACACT CAACAAGTTA TTGAAATTTT CGATGAAGGA 281 GAGAGTATAC CAATACCAAA GGCCGCCAAC ACAGACTATC GCTACTCTCG TATTAAAAAA 119692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGTATAC CAATACCAAA GGCCGCCAAC ACAGACTATC GCTACTCTCG TATTAAAAAA 341 AACAAACAAA AAATAAACTT ACTCAAACCA ATATCAATCG AACAACCAAA TGGTCCAAGT 119632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAACAAA AAATAAACTT ACTCAAACCA ATATCAATCG AACAACCAAA TGGTCCAAGT 401 TTCACTATAG AAAACAATCA TCTAGTTAAA TGGGCAAATT GGGAATTTCA CCTGAAGCCG 119572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACTATAG AAAACAATCA TCTAGTTAAA TGGGCAAATT GGGAATTTCA CCTGAAGCCG 461 GATCCGAGAG CCGGGGTGAT TATATCCCGG GTCATGTTT 119533 |||||||||| |||||||||| |||||||||| ||||||||| GATCCGAGAG CCGGGGTGAT TATATCCCGG GTCATGTTT 500 hqPGS_C08HBa0060C12.1-_SGN-E246163+ (120111 119977,119897 119533) ******************************************************************************** EST sequence 388 +strand 579 n (File: SGN-E395186+) 1 TTGATTTAGA CACTCAACAA GTTATTGAAA TTTTCGATGA AGGAGAGAGT ATACCAATAC 61 CAAAGGCCGC CAACACAGAC TATCGCTACT CTCGTATTAA AAAAAACAAA CAAAAAATAA 121 ACTTACTCAA ACCAATATCA ATCGAACAAC CAAATGGTCC AAGTTTCACT ATAGAAAACA 181 ATCATCTAGT TAAATGGGCA AATTGGGAAT TTCACCTGAA GCCGGATCCG AGAGCCGGGG 241 TGATTATATC CCGGGTCATG TTTGAGGATC CGGATACGGG GAAGATGAGG AATGTTATGT 301 ATAAAGGGTT TACGTCGGAG TTGTTTGTAC CTTACATGGA TCCATCAGAT GCATGGTATT 361 TTAAGACGTA TATGGATGCA GGTGAATACG GGTTCGGGTT ACAAGCGATG CCACTTGACC 421 CGTTAAATGA TTGTCCTCGT AATGCGTATT ATATGGATGG TGTATTTGTG GCAGCTGATG 481 GAACACCATA TGTGCGATCC AATATGATTT GTGTGTTTGA AAGATATGCT GGTGATATTG 541 GATGGCGACA TGCTGAATGT CCAATTACTG GTTTACCGA Predicted gene structure (within gDNA segment 120395 to 118598): Exon 1 119795 119218 ( 578 n); cDNA 1 578 ( 578 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E395186+ 1.000 578 0.998 C PGS_C08HBa0060C12.1-_SGN-E395186+ (119795 119218) Alignment (genomic DNA sequence = upper lines): TTGATTTAGA CACTCAACAA GTTATTGAAA TTTTCGATGA AGGAGAGAGT ATACCAATAC 119736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTTAGA CACTCAACAA GTTATTGAAA TTTTCGATGA AGGAGAGAGT ATACCAATAC 60 CAAAGGCCGC CAACACAGAC TATCGCTACT CTCGTATTAA AAAAAACAAA CAAAAAATAA 119676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGGCCGC CAACACAGAC TATCGCTACT CTCGTATTAA AAAAAACAAA CAAAAAATAA 120 ACTTACTCAA ACCAATATCA ATCGAACAAC CAAATGGTCC AAGTTTCACT ATAGAAAACA 119616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTACTCAA ACCAATATCA ATCGAACAAC CAAATGGTCC AAGTTTCACT ATAGAAAACA 180 ATCATCTAGT TAAATGGGCA AATTGGGAAT TTCACCTGAA GCCGGATCCG AGAGCCGGGG 119556 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCTAGT TAAATGGGCA AATTGGGAAT TTCACCTGAA GCCGGATCCG AGAGCCGGGG 240 TGATTATATC CCGGGTCATG TTTGAGGATC CGGATACGGG GAAGATGAGG AATGTTATGT 119496 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTATATC CCGGGTCATG TTTGAGGATC CGGATACGGG GAAGATGAGG AATGTTATGT 300 ATAAAGGGTT TACGTCGGAG TTGTTTGTAC CTTACATGGA TCCATCAGAT GCATGGTATT 119436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAGGGTT TACGTCGGAG TTGTTTGTAC CTTACATGGA TCCATCAGAT GCATGGTATT 360 TTAAGACGTA TATGGATGCA GGTGAATACG GGTTCGGGTT ACAAGCGATG CCACTTGACC 119376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGACGTA TATGGATGCA GGTGAATACG GGTTCGGGTT ACAAGCGATG CCACTTGACC 420 CGTTAAATGA TTGTCCTCGT AATGCGTATT ATATGGATGG TGTATTTGTG GCAGCTGATG 119316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTAAATGA TTGTCCTCGT AATGCGTATT ATATGGATGG TGTATTTGTG GCAGCTGATG 480 GAACACCATA TGTGCGATCC AATATGATTT GTGTGTTTGA AAGATATGCT GGTGATATTG 119256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACCATA TGTGCGATCC AATATGATTT GTGTGTTTGA AAGATATGCT GGTGATATTG 540 GATGGCGACA TGCTGAATGT CCAATTACTG GTTTACCG 119218 |||||||||| |||||||||| |||||||||| |||||||| GATGGCGACA TGCTGAATGT CCAATTACTG GTTTACCG 578 hqPGS_C08HBa0060C12.1-_SGN-E395186+ (119795 119218) ******************************************************************************** EST sequence 385 +strand 310 n (File: SGN-E291880+) 1 TGATTTAGAC ACTCAACAAG TTATTGGGAT TTTCGATGAA GGAGAGAGTA TACCAATACC 61 AAAGGCCGCC AACACAGACT ATCGCTACTC TCGTATTAAA AAAAACAAAC AAAAAATAAA 121 CTTACTCAAA CCAATATCAA TCGAACAACC AAATGGTCCA AGTTTCACTA TAGAAAACAA 181 TCATCTAGTT AAATGGGCAA ATTGGGAATT TCACCTGAAG CCGGATCCGA GAGCCGGGGT 241 GATTATATCC CGGGTCATGT TTGAGGATCC GGATACGGGG AAGATGAGGA ATGTTATGTA 301 TAAAGGGTTT Predicted gene structure (within gDNA segment 120394 to 118875): Exon 1 119794 119485 ( 310 n); cDNA 1 310 ( 310 n); score: 0.994 MATCH C08HBa0060C12.1- SGN-E291880+ 0.994 310 1.000 C PGS_C08HBa0060C12.1-_SGN-E291880+ (119794 119485) Alignment (genomic DNA sequence = upper lines): TGATTTAGAC ACTCAACAAG TTATTGAAAT TTTCGATGAA GGAGAGAGTA TACCAATACC 119735 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TGATTTAGAC ACTCAACAAG TTATTGGGAT TTTCGATGAA GGAGAGAGTA TACCAATACC 60 AAAGGCCGCC AACACAGACT ATCGCTACTC TCGTATTAAA AAAAACAAAC AAAAAATAAA 119675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCCGCC AACACAGACT ATCGCTACTC TCGTATTAAA AAAAACAAAC AAAAAATAAA 120 CTTACTCAAA CCAATATCAA TCGAACAACC AAATGGTCCA AGTTTCACTA TAGAAAACAA 119615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACTCAAA CCAATATCAA TCGAACAACC AAATGGTCCA AGTTTCACTA TAGAAAACAA 180 TCATCTAGTT AAATGGGCAA ATTGGGAATT TCACCTGAAG CCGGATCCGA GAGCCGGGGT 119555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTAGTT AAATGGGCAA ATTGGGAATT TCACCTGAAG CCGGATCCGA GAGCCGGGGT 240 GATTATATCC CGGGTCATGT TTGAGGATCC GGATACGGGG AAGATGAGGA ATGTTATGTA 119495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTATATCC CGGGTCATGT TTGAGGATCC GGATACGGGG AAGATGAGGA ATGTTATGTA 300 TAAAGGGTTT 119485 |||||||||| TAAAGGGTTT 310 hqPGS_C08HBa0060C12.1-_SGN-E291880+ (119794 119485) ******************************************************************************** EST sequence 313 +strand 589 n (File: SGN-E537400+) 1 ATCAATAGCC AGCCATGGAA GGAAGAAATC TCTTCTTCCT CATGAGTATA ATTTTGCTCT 61 TAATTTTCAC TTTCTTAAAC TTACCATCTC CGCTTTCTCA CACAACGGAT CAGCTATTCG 121 ACTGCACCAC TTACTCCCCG TGGTGCAGTT CGAAAAAGCC CTTTTTCCTC CGGCAACCGG 181 AAAATTCCAA AAATCACTAC GCCGATTTCC CCAATCATCC TTTAGACCCA CTGACAATCG 241 GCGAAATTCA AAAAGTGAAG AAAATCGTTC ATTCAATTGC GGAATTTAGG ATTAAAGGTT 301 GCGTTCTTCA CTCTGTTGTA CTTGAAGAGC CGGAGAAGGA GGTAGTGTTG AACTGGCGGA 361 GAGGTCACCG GCTTCCACCG CGGAAGGCGG CCGTCGTTGC GCGTGCGCTC GGCGTCGTGC 421 ACGTGCTTTC AGTGGATATT GAAACGGGTC GTGTGACCCG ACGTGAAACG GGTAGTTATT 481 CGGGTTACCC GATCCTGACT ATCGAGGATA TGATCTCCGC CACTTCTGCC CCGTTTGCCA 541 ACTCTGATTT TAACCGTTCG ATTATCCAGC GTGGCGGCCG CTTGGATAA Predicted gene structure (within gDNA segment 121200 to 119285): Exon 1 120600 120016 ( 585 n); cDNA 1 585 ( 585 n); score: 0.991 MATCH C08HBa0060C12.1- SGN-E537400+ 0.991 585 0.993 C PGS_C08HBa0060C12.1-_SGN-E537400+ (120600 120016) Alignment (genomic DNA sequence = upper lines): ATCAATAGCC AGCCATGGAA GGAAGAAATC TCTTCTTCCT CATGAGTATA ATTTTGCTCT 120541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAATAGCC AGCCATGGAA GGAAGAAATC TCTTCTTCCT CATGAGTATA ATTTTGCTCT 60 TAATTTTCAC TTTCTTAAAC TTACCATCTC CGCTTTCTCA CACAACGGAT CAGCTATTCG 120481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTTTCAC TTTCTTAAAC TTACCATCTC CGCTTTCTCA CACAACGGAT CAGCTATTCG 120 ACTGCACCAC TTACTCCCCG TGGTGCAGTT CGAAAAAGCC CTTTTTCCTC CGGCAACCGG 120421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCACCAC TTACTCCCCG TGGTGCAGTT CGAAAAAGCC CTTTTTCCTC CGGCAACCGG 180 AAAATTCCAA AAATCACTAC GCCGATTTCC CCAATCATCC TTTAGACCCA CTGACAATCG 120361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTCCAA AAATCACTAC GCCGATTTCC CCAATCATCC TTTAGACCCA CTGACAATCG 240 GCGAAATTCA AAAAGTGAAG AAAATCGTTC ATTCAATTGC GGAATTTAGG ATTAAAGGTT 120301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAAATTCA AAAAGTGAAG AAAATCGTTC ATTCAATTGC GGAATTTAGG ATTAAAGGTT 300 GCGTTCTTCA CTCTGTTGTA CTTGAAGAGC CGGAGAAGGA GGTAGTGTTG AACTGGCGGA 120241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTTCTTCA CTCTGTTGTA CTTGAAGAGC CGGAGAAGGA GGTAGTGTTG AACTGGCGGA 360 GAGGTCACCG GCTTCCACCG CGGAAGGCGG CCGTCGTTGC GCGTGCGCTC GGCGTCGTGC 120181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTCACCG GCTTCCACCG CGGAAGGCGG CCGTCGTTGC GCGTGCGCTC GGCGTCGTGC 420 ACGTGCTTTC AGTGGATATT GAAACGGGTC GTGTGACCCG ACGTGAAACG GGTAGTTATT 120121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGCTTTC AGTGGATATT GAAACGGGTC GTGTGACCCG ACGTGAAACG GGTAGTTATT 480 CGGGTTACCC GATCCTGACT ATCGAGGATA TGATCTCCGC CACTTCTGCC CCGTTTGCCA 120061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGTTACCC GATCCTGACT ATCGAGGATA TGATCTCCGC CACTTCTGCC CCGTTTGCCA 540 ACTCTGATTT TAACCGTTCG ATTATCCAGC GTGGCGTTGA TTTGG 120016 |||||||||| |||||||||| |||||||||| |||||| |||| ACTCTGATTT TAACCGTTCG ATTATCCAGC GTGGCGGCCG CTTGG 585 hqPGS_C08HBa0060C12.1-_SGN-E537400+ (120600 120016) ******************************************************************************** EST sequence 4 +strand 678 n (File: SGN-E346581+) 1 AGCCTTCTTG AGCGTTCTGG GATTATGGTA GTTAAGGGTG ATATTAATGA TGCTGTTTTG 61 CTGAGGAAGC TGTTTGATGC TGTTGCTTTT ACACATGTCA TGCATATGGC AGCTCAAGCT 121 GGAGTTAGAT ATGCAATGCA GAATCCAGGT TCTTATGTTC ATAGTAATAT TGCTGGTTTT 181 GTTAGTTTGC TTGAAGCATG TAAAATGGCT AATCCACAAC CTAGTATTGT TTGGGCTTCA 241 TCAAGTTCTG TTTATGGATT GAATTCAAAA GTACCCTTTT CAGAAAAAGA TAGAACTGAT 301 CAGCCTGCTA GTTTGTATGC AGCCACTAAA AAGGCTGGTG AAGAAATTGC TCATACATAT 361 AACCATATAT ATGGTCTTTC GATTACTGGA TTGCGGTTTT TCACAGTTTA TGGTCCATGG 421 GGTAGGCCTG ATATGGCGTA TTTTTTCTTT ACAAAAGATA TTTTGAGAGG GAAGGAAATC 481 AAGATTTTTG AGACATCTGA TCAAGGTAGT GTTGCTAGGG ATTTTACTTA TGTTGATGAT 541 GTGGTAAAGG GTTGTTTGGG AGCACTGGAT ACTGCGAAAA AGAGCACAGG GAGTGGGGGG 601 AAGAAGAAGG GTGCAGCTCA GTTGAGGATT TTTAATTTAG GTAATACAAA GCCGGTGCCT 661 GTTGGGAGAC TTGTTAGT Predicted gene structure (within gDNA segment 125769 to 127656): Exon 1 126369 127046 ( 678 n); cDNA 1 678 ( 678 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E346581+ 1.000 678 1.000 C PGS_C08HBa0060C12.1+_SGN-E346581+ (126369 127046) Alignment (genomic DNA sequence = upper lines): AGCCTTCTTG AGCGTTCTGG GATTATGGTA GTTAAGGGTG ATATTAATGA TGCTGTTTTG 126428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTTCTTG AGCGTTCTGG GATTATGGTA GTTAAGGGTG ATATTAATGA TGCTGTTTTG 60 CTGAGGAAGC TGTTTGATGC TGTTGCTTTT ACACATGTCA TGCATATGGC AGCTCAAGCT 126488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGGAAGC TGTTTGATGC TGTTGCTTTT ACACATGTCA TGCATATGGC AGCTCAAGCT 120 GGAGTTAGAT ATGCAATGCA GAATCCAGGT TCTTATGTTC ATAGTAATAT TGCTGGTTTT 126548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTTAGAT ATGCAATGCA GAATCCAGGT TCTTATGTTC ATAGTAATAT TGCTGGTTTT 180 GTTAGTTTGC TTGAAGCATG TAAAATGGCT AATCCACAAC CTAGTATTGT TTGGGCTTCA 126608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGTTTGC TTGAAGCATG TAAAATGGCT AATCCACAAC CTAGTATTGT TTGGGCTTCA 240 TCAAGTTCTG TTTATGGATT GAATTCAAAA GTACCCTTTT CAGAAAAAGA TAGAACTGAT 126668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGTTCTG TTTATGGATT GAATTCAAAA GTACCCTTTT CAGAAAAAGA TAGAACTGAT 300 CAGCCTGCTA GTTTGTATGC AGCCACTAAA AAGGCTGGTG AAGAAATTGC TCATACATAT 126728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCCTGCTA GTTTGTATGC AGCCACTAAA AAGGCTGGTG AAGAAATTGC TCATACATAT 360 AACCATATAT ATGGTCTTTC GATTACTGGA TTGCGGTTTT TCACAGTTTA TGGTCCATGG 126788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCATATAT ATGGTCTTTC GATTACTGGA TTGCGGTTTT TCACAGTTTA TGGTCCATGG 420 GGTAGGCCTG ATATGGCGTA TTTTTTCTTT ACAAAAGATA TTTTGAGAGG GAAGGAAATC 126848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGGCCTG ATATGGCGTA TTTTTTCTTT ACAAAAGATA TTTTGAGAGG GAAGGAAATC 480 AAGATTTTTG AGACATCTGA TCAAGGTAGT GTTGCTAGGG ATTTTACTTA TGTTGATGAT 126908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTTTTG AGACATCTGA TCAAGGTAGT GTTGCTAGGG ATTTTACTTA TGTTGATGAT 540 GTGGTAAAGG GTTGTTTGGG AGCACTGGAT ACTGCGAAAA AGAGCACAGG GAGTGGGGGG 126968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTAAAGG GTTGTTTGGG AGCACTGGAT ACTGCGAAAA AGAGCACAGG GAGTGGGGGG 600 AAGAAGAAGG GTGCAGCTCA GTTGAGGATT TTTAATTTAG GTAATACAAA GCCGGTGCCT 127028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAAGG GTGCAGCTCA GTTGAGGATT TTTAATTTAG GTAATACAAA GCCGGTGCCT 660 GTTGGGAGAC TTGTTAGT 127046 |||||||||| |||||||| GTTGGGAGAC TTGTTAGT 678 hqPGS_C08HBa0060C12.1+_SGN-E346581+ (126369 127046) ******************************************************************************** EST sequence 168 +strand 251 n (File: SGN-E207314+) 1 TGATTTTACG AAGAAATTTT ATAGACCCAA AAACCCAAAA TGCCACCTCT CTGAGGAAGA 61 TGAGTTTTTT TTTTTCTTCT TGTTATAGAA CAAATTCAAG AACTTTAATG GGTGGGTATA 121 TGCAGTGAAA GGTGAATAAA TCAGCTATGA AAGGAGGTGT CCTTTCGGCT CCTGGTGATT 181 ACATCTACTT CAAGTCTCAA GTTCCTCTTC ACAAGATCCC TATTGGATCA AAGCAGTGGC 241 GATATTATGA T Predicted gene structure (within gDNA segment 128976 to 131488): Exon 1 129576 129796 ( 221 n); cDNA 1 221 ( 221 n); score: 1.000 Intron 1 129797 130848 (1052 n); Pd: 0.940 (s: 1.00), Pa: 0.998 (s: 0) Exon 2 130849 130878 ( 30 n); cDNA 222 251 ( 30 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E207314+ 1.000 251 1.000 C PGS_C08HBa0060C12.1+_SGN-E207314+ (129576 129796,130849 130878) Alignment (genomic DNA sequence = upper lines): TGATTTTACG AAGAAATTTT ATAGACCCAA AAACCCAAAA TGCCACCTCT CTGAGGAAGA 129635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTTTACG AAGAAATTTT ATAGACCCAA AAACCCAAAA TGCCACCTCT CTGAGGAAGA 60 TGAGTTTTTT TTTTTCTTCT TGTTATAGAA CAAATTCAAG AACTTTAATG GGTGGGTATA 129695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTTTTTT TTTTTCTTCT TGTTATAGAA CAAATTCAAG AACTTTAATG GGTGGGTATA 120 TGCAGTGAAA GGTGAATAAA TCAGCTATGA AAGGAGGTGT CCTTTCGGCT CCTGGTGATT 129755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGTGAAA GGTGAATAAA TCAGCTATGA AAGGAGGTGT CCTTTCGGCT CCTGGTGATT 180 ACATCTACTT CAAGTCTCAA GTTCCTCTTC ACAAGATCCC TGTAATGCCT GATTCCATCA 129815 |||||||||| |||||||||| |||||||||| |||||||||| | ACATCTACTT CAAGTCTCAA GTTCCTCTTC ACAAGATCCC T......... .......... 221 ATTTTTAGTT TTTTCTGATT TGGGTTTTCT TCGATTTTGC TTAACTGTTT GGTTTCTCAA 129875 .......... .......... .......... .......... .......... .......... 221 ATGGGTCTGT GTCTTTTTTC TATTTGATTG TGTTTTTGTT TGTTTTCTTG AATTTCTATG 129935 .......... .......... .......... .......... .......... .......... 221 AATCTGAATG TATGATCATG TTGTGATTTG CCCAATTGGA TAGTCGTTTC TGATGTGTTT 129995 .......... .......... .......... .......... .......... .......... 221 TTTTTCCTTC CTATTTTGCT TGAATCTATT GTGACTGGTA GGTGGCCAAT GAGTATCCCA 130055 .......... .......... .......... .......... .......... .......... 221 AGTAAATTGG CATGATCGCT GTTGTTTATA GAAACATGAA TGTGACTGGT AGGTGGACAA 130115 .......... .......... .......... .......... .......... .......... 221 TGAGTATCAC AAGTAAATTG GCATGATAGC TGTTGTTTAT AGGAAACATG AAGTGTGTTC 130175 .......... .......... .......... .......... .......... .......... 221 CTTGTGAGTA CTGGATAAGA CTCTGCTTTT GTTCCTGAAA AATCAACTGA ATTTCTTTAA 130235 .......... .......... .......... .......... .......... .......... 221 GTTGCTATAG TTATCATTTT TAACTCTGAA ACAACTTTGC CCTGAATTGG CATCATGGCA 130295 .......... .......... .......... .......... .......... .......... 221 ATTGTAGTGA TGCCTTATCA AATTCCCTGT TATGCAGATT AGGTTAGTTT CCATTTAGTT 130355 .......... .......... .......... .......... .......... .......... 221 AGTCGCAATA GAATTTGCAC TTTTTTTGGA AATCTTGCAA AACCTGTTAT CTTGTAGTTG 130415 .......... .......... .......... .......... .......... .......... 221 GTCGATTAGT TTGTGCGTGA ATAATGTTGG AGTGTTTTAT GTGTTTTCCA TCAAATAGGA 130475 .......... .......... .......... .......... .......... .......... 221 AAAACGTCTC GTGCTAATCA CAGTGGAATG GCAAATCTAA GTTTATATTA AGATTCTTCT 130535 .......... .......... .......... .......... .......... .......... 221 CTTTCTAAAT ATTTGGTCCT GCACTTCATT CTACTCTTTT TGCTTACTTT TCGAAAATTT 130595 .......... .......... .......... .......... .......... .......... 221 TGCTAGTTGG AAGACTACCT TCGTTTTTCA GATGAAGAAG ATGGCTACTT TCTTGAATTT 130655 .......... .......... .......... .......... .......... .......... 221 GATGTTGTCT ATTGATCTTA AGTTCTTCGG CCCTCTTTTG GAGGTCCTTG CAGTTATTCT 130715 .......... .......... .......... .......... .......... .......... 221 AAAGATTATG TTCGATTCTA CACATTTGAC TTTGATTATT GCTTCTTTAT TTAGGTAGTA 130775 .......... .......... .......... .......... .......... .......... 221 GAGGTGCATA AATGGACTGG TCTACTCTTT GTTAAATGTA CTATTATTCT TAACACTTTG 130835 .......... .......... .......... .......... .......... .......... 221 ATCTGTTGGG CAGATTGGAT CAAAGCAGTG GCGATATTAT GAT 130878 ||||||| |||||||||| |||||||||| ||| .......... ...ATTGGAT CAAAGCAGTG GCGATATTAT GAT 251 hqPGS_C08HBa0060C12.1+_SGN-E207314+ (129576 129796,130849 130878) ******************************************************************************** EST sequence 270 +strand 449 n (File: SGN-E260217+) 1 AAATTTTATA GACCCAAAAA CCCAAAATGC CACCTCTCTG AGGAAGATGA GTTTTTTTTT 61 TTTCTTCTTG TTATAGAACA AATTCAAGAA CTTTAATGGG TGGGTATATG CAGTGAAAGG 121 TGAATAAATC AGCTATGAAA GGAGGTGTCC TTTCGGCTCC TGGTGATTAC ATCTACTTCA 181 AGTCTCAAGT TCCTCTTCAC AAGATCCCTA TTGGATCAAA GCAGTGGCGA TATTATGATT 241 TTGGCCCGAA AGTAGTTCCC CCACTCATTT GCCTCCCTGG CATAGCTGGT ACTGCTGATG 301 TATATTACAA GCAGATAATG TCATTGTCTA TGAAGGGTTA CCGTGTAATT TCCGTTGATA 361 TTCCGCGTGC ATGGAACAAC CACGAGTGGA TTCAAGCATT TGAAGAAGTT CTAGATGCTA 421 TTGATGTTCA TCATATTCAT CTCTATGGA Predicted gene structure (within gDNA segment 128989 to 133118): Exon 1 129589 129796 ( 208 n); cDNA 1 209 ( 209 n); score: 0.988 Intron 1 129797 130848 (1052 n); Pd: 0.940 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 130849 130974 ( 126 n); cDNA 210 335 ( 126 n); score: 1.000 Intron 2 130975 132259 (1285 n); Pd: 0.968 (s: 1.00), Pa: 0.915 (s: 1.00) Exon 3 132260 132358 ( 99 n); cDNA 336 434 ( 99 n); score: 0.960 MATCH C08HBa0060C12.1+ SGN-E260217+ 0.985 433 0.964 C PGS_C08HBa0060C12.1+_SGN-E260217+ (129589 129796,130849 130974,132260 132358) Alignment (genomic DNA sequence = upper lines): AAATTTTATA GACCCAAAAA CCCAAAATGC CACCTCTCTG AGGAAGATGA G-TTTTTTTT 129647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| AAATTTTATA GACCCAAAAA CCCAAAATGC CACCTCTCTG AGGAAGATGA GTTTTTTTTT 60 TTTCTTCTTG TTATAGAACA AATTCAAGAA CTTTAATGGG TGGGTATATG CAGTGAAAGG 129707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCTTG TTATAGAACA AATTCAAGAA CTTTAATGGG TGGGTATATG CAGTGAAAGG 120 TGAATAAATC AGCTATGAAA GGAGGTGTCC TTTCGGCTCC TGGTGATTAC ATCTACTTCA 129767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATAAATC AGCTATGAAA GGAGGTGTCC TTTCGGCTCC TGGTGATTAC ATCTACTTCA 180 AGTCTCAAGT TCCTCTTCAC AAGATCCCTG TAATGCCTGA TTCCATCAAT TTTTAGTTTT 129827 |||||||||| |||||||||| ||||||||| AGTCTCAAGT TCCTCTTCAC AAGATCCCT. .......... .......... .......... 209 TTCTGATTTG GGTTTTCTTC GATTTTGCTT AACTGTTTGG TTTCTCAAAT GGGTCTGTGT 129887 .......... .......... .......... .......... .......... .......... 209 CTTTTTTCTA TTTGATTGTG TTTTTGTTTG TTTTCTTGAA TTTCTATGAA TCTGAATGTA 129947 .......... .......... .......... .......... .......... .......... 209 TGATCATGTT GTGATTTGCC CAATTGGATA GTCGTTTCTG ATGTGTTTTT TTTCCTTCCT 130007 .......... .......... .......... .......... .......... .......... 209 ATTTTGCTTG AATCTATTGT GACTGGTAGG TGGCCAATGA GTATCCCAAG TAAATTGGCA 130067 .......... .......... .......... .......... .......... .......... 209 TGATCGCTGT TGTTTATAGA AACATGAATG TGACTGGTAG GTGGACAATG AGTATCACAA 130127 .......... .......... .......... .......... .......... .......... 209 GTAAATTGGC ATGATAGCTG TTGTTTATAG GAAACATGAA GTGTGTTCCT TGTGAGTACT 130187 .......... .......... .......... .......... .......... .......... 209 GGATAAGACT CTGCTTTTGT TCCTGAAAAA TCAACTGAAT TTCTTTAAGT TGCTATAGTT 130247 .......... .......... .......... .......... .......... .......... 209 ATCATTTTTA ACTCTGAAAC AACTTTGCCC TGAATTGGCA TCATGGCAAT TGTAGTGATG 130307 .......... .......... .......... .......... .......... .......... 209 CCTTATCAAA TTCCCTGTTA TGCAGATTAG GTTAGTTTCC ATTTAGTTAG TCGCAATAGA 130367 .......... .......... .......... .......... .......... .......... 209 ATTTGCACTT TTTTTGGAAA TCTTGCAAAA CCTGTTATCT TGTAGTTGGT CGATTAGTTT 130427 .......... .......... .......... .......... .......... .......... 209 GTGCGTGAAT AATGTTGGAG TGTTTTATGT GTTTTCCATC AAATAGGAAA AACGTCTCGT 130487 .......... .......... .......... .......... .......... .......... 209 GCTAATCACA GTGGAATGGC AAATCTAAGT TTATATTAAG ATTCTTCTCT TTCTAAATAT 130547 .......... .......... .......... .......... .......... .......... 209 TTGGTCCTGC ACTTCATTCT ACTCTTTTTG CTTACTTTTC GAAAATTTTG CTAGTTGGAA 130607 .......... .......... .......... .......... .......... .......... 209 GACTACCTTC GTTTTTCAGA TGAAGAAGAT GGCTACTTTC TTGAATTTGA TGTTGTCTAT 130667 .......... .......... .......... .......... .......... .......... 209 TGATCTTAAG TTCTTCGGCC CTCTTTTGGA GGTCCTTGCA GTTATTCTAA AGATTATGTT 130727 .......... .......... .......... .......... .......... .......... 209 CGATTCTACA CATTTGACTT TGATTATTGC TTCTTTATTT AGGTAGTAGA GGTGCATAAA 130787 .......... .......... .......... .......... .......... .......... 209 TGGACTGGTC TACTCTTTGT TAAATGTACT ATTATTCTTA ACACTTTGAT CTGTTGGGCA 130847 .......... .......... .......... .......... .......... .......... 209 GATTGGATCA AAGCAGTGGC GATATTATGA TTTTGGCCCG AAAGTAGTTC CCCCACTCAT 130907 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .ATTGGATCA AAGCAGTGGC GATATTATGA TTTTGGCCCG AAAGTAGTTC CCCCACTCAT 268 TTGCCTCCCT GGCATAGCTG GTACTGCTGA TGTATATTAC AAGCAGATAA TGTCATTGTC 130967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTCCCT GGCATAGCTG GTACTGCTGA TGTATATTAC AAGCAGATAA TGTCATTGTC 328 TATGAAGGTA ATGAGGAAAA CTCCTGATTC TTTGCTTGTT TTATCTAGTT ATTGCTGAAT 131027 ||||||| TATGAAG... .......... .......... .......... .......... .......... 335 TTTTGTGTAT CTTCTTTGAG AGTGAAAATG ACAGTGAAGA ACGGGTCATA TATGTGGTTG 131087 .......... .......... .......... .......... .......... .......... 335 TAATCGTTTC ACCCATTCAT AAATATATAT GAATGTAAAG GATCAGTTAA TCTCTTAAAC 131147 .......... .......... .......... .......... .......... .......... 335 TTGCACCTGT TATGTCTTTC CCATGTTACT TACTATGGTA ACTTCCAAAA TTAGTCAAAG 131207 .......... .......... .......... .......... .......... .......... 335 GTACCAATGA GCGTTTCCAA ATGATTAGAA CTGTGTTAGA ACCTATGTTG CTTGGACTCT 131267 .......... .......... .......... .......... .......... .......... 335 CTTAAAAATT TTGTTGCAAC TTGCACACAG ATCCTCTAAA AATGCACTTC TTTTGGAGGA 131327 .......... .......... .......... .......... .......... .......... 335 TGCAACATGC ACCATGTGGC ATTTTTGAAG AGTCTGACTG TCTGAGCAAC ATAGGTTAGA 131387 .......... .......... .......... .......... .......... .......... 335 GCAAAATATG CACTTTAGTA GTGCCTAAAG CTTAAAATCT ATCATTAAGA AGATGGAAGG 131447 .......... .......... .......... .......... .......... .......... 335 AATATAATAA TGATATCTAG TGATAGGGAT TATCACTAGA AGGTATCACT TGTGAATGAG 131507 .......... .......... .......... .......... .......... .......... 335 TCTGTCTCTG TCTCTGTCTC TGTCTCTCTC CTTTTGATTG AGACCTTACT TAAATATGAG 131567 .......... .......... .......... .......... .......... .......... 335 TTCCCAAATT GGGATGTAGA TCTAACAACA GAGGGACCTG GAATACATCA ATTATTTGAT 131627 .......... .......... .......... .......... .......... .......... 335 TGATCTCTTT GCTCTTAGAT GAAAAGTTTT CAACAGCAAA CGAAAAATTC TATTCACAAT 131687 .......... .......... .......... .......... .......... .......... 335 GGAAGTGGTC TTTGATAAGA ACATGGAAAG ATGTTCCAAT AAAAGCTCAG TAATGCATCA 131747 .......... .......... .......... .......... .......... .......... 335 AGTAGTGTAA GTGATAACTA CTGCAGTGTA TGAATTGTAA CAGAGGTTGC TCATTGTTTA 131807 .......... .......... .......... .......... .......... .......... 335 ATGATTTTGC TGGTCAAACT AAGATCCGAG AAAGCACTGG CCTGCACTGA ATCTTGGAAA 131867 .......... .......... .......... .......... .......... .......... 335 ATAGATAACG CTTGCCCCAT TGGCTTGCCC TCTGTACTAC ATGGACTAAT ATCTTTTTTT 131927 .......... .......... .......... .......... .......... .......... 335 TTAAAGGTAA ATGTATTTAC ATGGATTACA ACCTTATTCT TCTTTTTATT TTTACGAGGT 131987 .......... .......... .......... .......... .......... .......... 335 AACTGTATTT ACATGGACTT ATCGTGTCAA GTGATGACAC AAAGCAAAAT AGAATTTTCC 132047 .......... .......... .......... .......... .......... .......... 335 ATTTTCTGAA TGATGTTAGA ATCTCTTGCA ACATAATTTT AGGATCTAAC TAAAGACAAT 132107 .......... .......... .......... .......... .......... .......... 335 TTCCATTAGT TGGGGCTGAA AGGTTTTCTT TGCATGTTAC AACCTATGCA TATATGTCTC 132167 .......... .......... .......... .......... .......... .......... 335 TTTCCACGAT ATATAGCGAC TGGATAATTT TCTATAAGAC AACCCCCAAA TTCAATTGAA 132227 .......... .......... .......... .......... .......... .......... 335 GGAAGCTAAC ATCTTCTGGT TTACTTTCTC AGGGTTACCG TGTAATTTCC GTTGATATTC 132287 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GGTTACCG TGTAATTTCC GTTGATATTC 363 CGCGTGCATG GAACAACCAC GAGTGGATTC AAGCATTTGA GAAGTTTCTA GATGCTATTG 132347 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| |||||||||| CGCGTGCATG GAACAACCAC GAGTGGATTC AAGCATTTGA AGAAGTTCTA GATGCTATTG 423 ATGTTCATCA T 132358 |||||||||| | ATGTTCATCA T 434 hqPGS_C08HBa0060C12.1+_SGN-E260217+ (129589 129796,130849 130974,132260 132358) ******************************************************************************** EST sequence 266 +strand 538 n (File: SGN-E330259+) 1 CCTTTCTGAG GAAGATGAGT TTTTTTTTTC TTCTTGTTAT AGAACAAATT CAAGAACTTT 61 AATGGGTGGG TATATGCAGT GAAAGGTGAA TAAATCAGCT ATGAAAGGAG GTGTCCTTTC 121 GGCTCCTGGT GATTACATCT ACTTCAAGTC TCAAGTTCCT CTTCACAAGA TCCCTATTGG 181 ATCAAAGCAG TGGCGATATT ATGATTTTGG CCCGAAAGTA GTTCCCCCAC TCATTTGCCT 241 CCCTGGCATA GCTGGTACTG CTGATGTATA TTACAAGCAG ATAATGTCAT TGTCTATGAA 301 GGGTTACCGT GTAATTTCCG TTGATATTCC GCGTGCATGG AACAACCACG AGTGGATTCA 361 AGCATTTGAG AAGTTTCTAG ATGCTATTGA TGTTCATCAT ATTCATCTCT ATGGAACAGC 421 CCTTGGAGGC TTCTTAGCAC AACTTTTTGC TCAGCATCGT CCCCGGCGTG TTAGGTCCTT 481 GGTACTTTCA AATACATTTG TGGAGACCAC TAATTTCTCA CCTTCAATGC CATGGGCT Predicted gene structure (within gDNA segment 128985 to 135163): Exon 1 129621 129796 ( 176 n); cDNA 1 175 ( 175 n); score: 0.989 Intron 1 129797 130848 (1052 n); Pd: 0.940 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 130849 130974 ( 126 n); cDNA 176 301 ( 126 n); score: 1.000 Intron 2 130975 132259 (1285 n); Pd: 0.968 (s: 1.00), Pa: 0.915 (s: 1.00) Exon 3 132260 132358 ( 99 n); cDNA 302 400 ( 99 n); score: 1.000 Intron 3 132359 134415 (2057 n); Pd: 0.791 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 4 134416 134553 ( 138 n); cDNA 401 538 ( 138 n); score: 0.986 MATCH C08HBa0060C12.1+ SGN-E330259+ 0.993 539 1.002 C PGS_C08HBa0060C12.1+_SGN-E330259+ (129621 129796,130849 130974,132260 132358,134416 134553) Alignment (genomic DNA sequence = upper lines): CCTCTCTGAG GAAGATGAGT TTTTTTTTTT CTTCTTGTTA TAGAACAAAT TCAAGAACTT 129680 ||| |||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CCTTTCTGAG GAAGATGAGT -TTTTTTTTT CTTCTTGTTA TAGAACAAAT TCAAGAACTT 59 TAATGGGTGG GTATATGCAG TGAAAGGTGA ATAAATCAGC TATGAAAGGA GGTGTCCTTT 129740 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGGGTGG GTATATGCAG TGAAAGGTGA ATAAATCAGC TATGAAAGGA GGTGTCCTTT 119 CGGCTCCTGG TGATTACATC TACTTCAAGT CTCAAGTTCC TCTTCACAAG ATCCCTGTAA 129800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CGGCTCCTGG TGATTACATC TACTTCAAGT CTCAAGTTCC TCTTCACAAG ATCCCT.... 175 TGCCTGATTC CATCAATTTT TAGTTTTTTC TGATTTGGGT TTTCTTCGAT TTTGCTTAAC 129860 .......... .......... .......... .......... .......... .......... 175 TGTTTGGTTT CTCAAATGGG TCTGTGTCTT TTTTCTATTT GATTGTGTTT TTGTTTGTTT 129920 .......... .......... .......... .......... .......... .......... 175 TCTTGAATTT CTATGAATCT GAATGTATGA TCATGTTGTG ATTTGCCCAA TTGGATAGTC 129980 .......... .......... .......... .......... .......... .......... 175 GTTTCTGATG TGTTTTTTTT CCTTCCTATT TTGCTTGAAT CTATTGTGAC TGGTAGGTGG 130040 .......... .......... .......... .......... .......... .......... 175 CCAATGAGTA TCCCAAGTAA ATTGGCATGA TCGCTGTTGT TTATAGAAAC ATGAATGTGA 130100 .......... .......... .......... .......... .......... .......... 175 CTGGTAGGTG GACAATGAGT ATCACAAGTA AATTGGCATG ATAGCTGTTG TTTATAGGAA 130160 .......... .......... .......... .......... .......... .......... 175 ACATGAAGTG TGTTCCTTGT GAGTACTGGA TAAGACTCTG CTTTTGTTCC TGAAAAATCA 130220 .......... .......... .......... .......... .......... .......... 175 ACTGAATTTC TTTAAGTTGC TATAGTTATC ATTTTTAACT CTGAAACAAC TTTGCCCTGA 130280 .......... .......... .......... .......... .......... .......... 175 ATTGGCATCA TGGCAATTGT AGTGATGCCT TATCAAATTC CCTGTTATGC AGATTAGGTT 130340 .......... .......... .......... .......... .......... .......... 175 AGTTTCCATT TAGTTAGTCG CAATAGAATT TGCACTTTTT TTGGAAATCT TGCAAAACCT 130400 .......... .......... .......... .......... .......... .......... 175 GTTATCTTGT AGTTGGTCGA TTAGTTTGTG CGTGAATAAT GTTGGAGTGT TTTATGTGTT 130460 .......... .......... .......... .......... .......... .......... 175 TTCCATCAAA TAGGAAAAAC GTCTCGTGCT AATCACAGTG GAATGGCAAA TCTAAGTTTA 130520 .......... .......... .......... .......... .......... .......... 175 TATTAAGATT CTTCTCTTTC TAAATATTTG GTCCTGCACT TCATTCTACT CTTTTTGCTT 130580 .......... .......... .......... .......... .......... .......... 175 ACTTTTCGAA AATTTTGCTA GTTGGAAGAC TACCTTCGTT TTTCAGATGA AGAAGATGGC 130640 .......... .......... .......... .......... .......... .......... 175 TACTTTCTTG AATTTGATGT TGTCTATTGA TCTTAAGTTC TTCGGCCCTC TTTTGGAGGT 130700 .......... .......... .......... .......... .......... .......... 175 CCTTGCAGTT ATTCTAAAGA TTATGTTCGA TTCTACACAT TTGACTTTGA TTATTGCTTC 130760 .......... .......... .......... .......... .......... .......... 175 TTTATTTAGG TAGTAGAGGT GCATAAATGG ACTGGTCTAC TCTTTGTTAA ATGTACTATT 130820 .......... .......... .......... .......... .......... .......... 175 ATTCTTAACA CTTTGATCTG TTGGGCAGAT TGGATCAAAG CAGTGGCGAT ATTATGATTT 130880 || |||||||||| |||||||||| |||||||||| .......... .......... ........AT TGGATCAAAG CAGTGGCGAT ATTATGATTT 207 TGGCCCGAAA GTAGTTCCCC CACTCATTTG CCTCCCTGGC ATAGCTGGTA CTGCTGATGT 130940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCCGAAA GTAGTTCCCC CACTCATTTG CCTCCCTGGC ATAGCTGGTA CTGCTGATGT 267 ATATTACAAG CAGATAATGT CATTGTCTAT GAAGGTAATG AGGAAAACTC CTGATTCTTT 131000 |||||||||| |||||||||| |||||||||| |||| ATATTACAAG CAGATAATGT CATTGTCTAT GAAG...... .......... .......... 301 GCTTGTTTTA TCTAGTTATT GCTGAATTTT TGTGTATCTT CTTTGAGAGT GAAAATGACA 131060 .......... .......... .......... .......... .......... .......... 301 GTGAAGAACG GGTCATATAT GTGGTTGTAA TCGTTTCACC CATTCATAAA TATATATGAA 131120 .......... .......... .......... .......... .......... .......... 301 TGTAAAGGAT CAGTTAATCT CTTAAACTTG CACCTGTTAT GTCTTTCCCA TGTTACTTAC 131180 .......... .......... .......... .......... .......... .......... 301 TATGGTAACT TCCAAAATTA GTCAAAGGTA CCAATGAGCG TTTCCAAATG ATTAGAACTG 131240 .......... .......... .......... .......... .......... .......... 301 TGTTAGAACC TATGTTGCTT GGACTCTCTT AAAAATTTTG TTGCAACTTG CACACAGATC 131300 .......... .......... .......... .......... .......... .......... 301 CTCTAAAAAT GCACTTCTTT TGGAGGATGC AACATGCACC ATGTGGCATT TTTGAAGAGT 131360 .......... .......... .......... .......... .......... .......... 301 CTGACTGTCT GAGCAACATA GGTTAGAGCA AAATATGCAC TTTAGTAGTG CCTAAAGCTT 131420 .......... .......... .......... .......... .......... .......... 301 AAAATCTATC ATTAAGAAGA TGGAAGGAAT ATAATAATGA TATCTAGTGA TAGGGATTAT 131480 .......... .......... .......... .......... .......... .......... 301 CACTAGAAGG TATCACTTGT GAATGAGTCT GTCTCTGTCT CTGTCTCTGT CTCTCTCCTT 131540 .......... .......... .......... .......... .......... .......... 301 TTGATTGAGA CCTTACTTAA ATATGAGTTC CCAAATTGGG ATGTAGATCT AACAACAGAG 131600 .......... .......... .......... .......... .......... .......... 301 GGACCTGGAA TACATCAATT ATTTGATTGA TCTCTTTGCT CTTAGATGAA AAGTTTTCAA 131660 .......... .......... .......... .......... .......... .......... 301 CAGCAAACGA AAAATTCTAT TCACAATGGA AGTGGTCTTT GATAAGAACA TGGAAAGATG 131720 .......... .......... .......... .......... .......... .......... 301 TTCCAATAAA AGCTCAGTAA TGCATCAAGT AGTGTAAGTG ATAACTACTG CAGTGTATGA 131780 .......... .......... .......... .......... .......... .......... 301 ATTGTAACAG AGGTTGCTCA TTGTTTAATG ATTTTGCTGG TCAAACTAAG ATCCGAGAAA 131840 .......... .......... .......... .......... .......... .......... 301 GCACTGGCCT GCACTGAATC TTGGAAAATA GATAACGCTT GCCCCATTGG CTTGCCCTCT 131900 .......... .......... .......... .......... .......... .......... 301 GTACTACATG GACTAATATC TTTTTTTTTA AAGGTAAATG TATTTACATG GATTACAACC 131960 .......... .......... .......... .......... .......... .......... 301 TTATTCTTCT TTTTATTTTT ACGAGGTAAC TGTATTTACA TGGACTTATC GTGTCAAGTG 132020 .......... .......... .......... .......... .......... .......... 301 ATGACACAAA GCAAAATAGA ATTTTCCATT TTCTGAATGA TGTTAGAATC TCTTGCAACA 132080 .......... .......... .......... .......... .......... .......... 301 TAATTTTAGG ATCTAACTAA AGACAATTTC CATTAGTTGG GGCTGAAAGG TTTTCTTTGC 132140 .......... .......... .......... .......... .......... .......... 301 ATGTTACAAC CTATGCATAT ATGTCTCTTT CCACGATATA TAGCGACTGG ATAATTTTCT 132200 .......... .......... .......... .......... .......... .......... 301 ATAAGACAAC CCCCAAATTC AATTGAAGGA AGCTAACATC TTCTGGTTTA CTTTCTCAGG 132260 | .......... .......... .......... .......... .......... .........G 302 GTTACCGTGT AATTTCCGTT GATATTCCGC GTGCATGGAA CAACCACGAG TGGATTCAAG 132320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACCGTGT AATTTCCGTT GATATTCCGC GTGCATGGAA CAACCACGAG TGGATTCAAG 362 CATTTGAGAA GTTTCTAGAT GCTATTGATG TTCATCATGT ATGTTCCCTT TATGTCAGTG 132380 |||||||||| |||||||||| |||||||||| |||||||| CATTTGAGAA GTTTCTAGAT GCTATTGATG TTCATCAT.. .......... .......... 400 CTTACTTGAT GGCTACAAGG GGTGTACATG GGGCGGTTTG GTTCAGTTTT TATCAAAACC 132440 .......... .......... .......... .......... .......... .......... 400 AAACCAAACC AACTATATCA GTTTGCTTGG TTTTTTGGCA CGTGAATACT ATTTCAATCT 132500 .......... .......... .......... .......... .......... .......... 400 TAATGTTTCG AGTTATAGAT AAAGTTTTGA TAAATCAATA TATGTGTAGT AGTAATTTCA 132560 .......... .......... .......... .......... .......... .......... 400 CGTTAGGGAT CAAGTTCTAA TAAATCAACT AAACTAGTTC AGACTTTGAT TGTTCTGTCA 132620 .......... .......... .......... .......... .......... .......... 400 GTCTTAATTT GCAGTTTGGT TTGTGCACCC TATAACATAA GCCTAAGTAT GTAGTGATAC 132680 .......... .......... .......... .......... .......... .......... 400 CAATCATGTT AGGGATCCAT GATCAAAGCA ATAAAAGTAA GAATGTGTGT AAGCTAAAAG 132740 .......... .......... .......... .......... .......... .......... 400 ATATAATATG AACGGAAAGA TAAAGATAGA CAAATTTAAG AACGAGTTCC TTAATTCAAA 132800 .......... .......... .......... .......... .......... .......... 400 GTGGATCAAG AAATCTAGAA TGTCAAGATG AGCGTAAAGT CATAAATTAA TTCCTAACAA 132860 .......... .......... .......... .......... .......... .......... 400 TAACAATTAA CCTAAAAGAA CTAATCACCT TTGATAGAGA ATTAATCAAG AAAATAGGTT 132920 .......... .......... .......... .......... .......... .......... 400 TTGGAACCCA CCCCCCTTTA GAGTATCAAG AACAACATTA GGCAAAGACT TGTCACCTTT 132980 .......... .......... .......... .......... .......... .......... 400 CTTGAATACC TAAAAGTAAC CTTAGTTTTA AGAAGGAATT AAACTTACCA CCTTTAAGTT 133040 .......... .......... .......... .......... .......... .......... 400 GATTCTTGAA GGTTGAAAAA ATTCAAGAGC ACTCACAACA TGAGTGCAAA GGAAAAATCC 133100 .......... .......... .......... .......... .......... .......... 400 TCTCAATTCA ATTGACAATA ATGTATCTAT AAATAAATAA ACAATATATG CTAAGGGGCA 133160 .......... .......... .......... .......... .......... .......... 400 TGCAACACCC TCCCAAAAAG GCTAGGAAAT TAATCCAATA CTACTTTGGG CAACAAGTCC 133220 .......... .......... .......... .......... .......... .......... 400 TTTCGGAAAA AGAAATTTAG TAAATCTACA ATAAAAAGAA ATCAAGAGAT CTTGGCCAAG 133280 .......... .......... .......... .......... .......... .......... 400 GAAACTAAAA AACATGTAAA AATTTTCTAA GAAATAAGGA AACTTTGACC AAGAAAACAA 133340 .......... .......... .......... .......... .......... .......... 400 GTAAAATTAA TGTCACACTT ATTTCCAAAA CTACTTAACA AAATAAGAGA GAAGTAGCAG 133400 .......... .......... .......... .......... .......... .......... 400 ATGATATGGA ATTGCACACG CCCATCTTGG TCAAGCACAC ATCTAAGTAG GCGTGTATGT 133460 .......... .......... .......... .......... .......... .......... 400 TAGCTCTTTG AAGCATGTAT TTAATTTTGG GCTCCTCTTT GGTGTGTATT TTTTTTCTCA 133520 .......... .......... .......... .......... .......... .......... 400 AAAAAAAAAA ATCATCCCCA TCTTGGACTT GACTTGGATC ATGAGATAAG TGTAGCGCTT 133580 .......... .......... .......... .......... .......... .......... 400 AGTCAAATCT TCCCCTACTA GTCGAGAGCT CTTTTTTCAC GATAAACCGG TGTTGTCAAA 133640 .......... .......... .......... .......... .......... .......... 400 GATGCGCTTA AGCCCTAAAG CAAGGCTCAA AACAAGTTAA GCTCTCCGCC TTGCTTATGT 133700 .......... .......... .......... .......... .......... .......... 400 GCGCTTCAGT GTCGTCATAA AGGCTCTACG ACAATCTTTT CCTTGCAAAT GAGCATTTCC 133760 .......... .......... .......... .......... .......... .......... 400 TGAAGTGGTG ACGCTAAACA AATGGTATTT CACTTTATTG TAAAAAAATT CAATTTCTTT 133820 .......... .......... .......... .......... .......... .......... 400 GTCCATATAT TTGTTGTTCA TGCTTATGTA TATTTATATT TGCACCTTTT TTCATCATAG 133880 .......... .......... .......... .......... .......... .......... 400 CCCACACTTT ATTTGCGCTT TCCAATTAAA GCCCCAACTG ACCGTAGAGC TTTTTTGCGT 133940 .......... .......... .......... .......... .......... .......... 400 TTCTTTTCGC TTTCGATAGC ACCAATAAAC ATCTTCTTGA TCTCACATTG AAGTTCCTGA 134000 .......... .......... .......... .......... .......... .......... 400 ACTTTGTCAA GCATCTCCTT AGCCTACAAG CTCAATCCAA GTCCTTTTTT GGAGTTATGC 134060 .......... .......... .......... .......... .......... .......... 400 CTCAGCCTAC AAGCTCAATG CAAGTCCTTT TTTGGAGTTA TGCCTCCATG GATGCTATCA 134120 .......... .......... .......... .......... .......... .......... 400 TGTAACGTGT GCAATCTGAC TAGTCTTATT TATCTACGAG ATGAGCAATT TAGAATTAGT 134180 .......... .......... .......... .......... .......... .......... 400 AAGATGCACC TATTGACTTT CTTGATTTAT ATATGCAGTT AGATATAGTA TGCAAAGAAG 134240 .......... .......... .......... .......... .......... .......... 400 TGCATATAAA GATACATCTA TAAGTTTTTA TCTTTTTGTC TGGTCACTTG TTTGATATTG 134300 .......... .......... .......... .......... .......... .......... 400 GTTTGATTAT AGTGTTGAAT CATGCATTTC AATTTTTTTA TTTGGAATAA AAGCAGAGAT 134360 .......... .......... .......... .......... .......... .......... 400 TAAGTTTGTT CATGATAAAG GAAGTAACTG ATGTATTAAA CTTGTCCTAC GGCAGATTCA 134420 ||||| .......... .......... .......... .......... .......... .....ATTCA 405 TCTCTATGGA ACAGCCCTTG GAGGCTTCTT AGCACAACTT TTTGCTCAGC ATCGTCCCCG 134480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTATGGA ACAGCCCTTG GAGGCTTCTT AGCACAACTT TTTGCTCAGC ATCGTCCCCG 465 GCGTGTTAGG TCCTTGGTAC TTTCAAATAC ATTTGTGGAG ACCACTAGTT TCTCAGCTTC 134540 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||| |||| GCGTGTTAGG TCCTTGGTAC TTTCAAATAC ATTTGTGGAG ACCACTAATT TCTCACCTTC 525 AATGCCATGG GCT 134553 |||||||||| ||| AATGCCATGG GCT 538 hqPGS_C08HBa0060C12.1+_SGN-E330259+ (129621 129796,130849 130974,132260 132358,134416 134553) ******************************************************************************** EST sequence 68 +strand 602 n (File: SGN-E271597+) 1 AGGAAGATGA GTTTTTTTTT TTTCTTCTTG TTATAGAACA AATTCAAGAA CTTTAATGGG 61 TGGGTATATG CAGTGAAAGG TGAATAAATC AGCTATGAAA GGAGGTGTCC TTTCGGCTCC 121 TGGTGATTAC ATCTACTTCA AGTCTCAAGT TCCTCTTCAC AAGATCCCTA TTGGATCAAA 181 GCAGTGGCGA TATTATGATT TTGGCCCGAA AGTAGTTCCC CCACTCATTT GCCTCCCTGG 241 CATAGCTGGT ACTGCTGATG TATATTACAA GCAGATAATG TCATTGTCTA TGAAGGGTTA 301 CCGTGTAATT TCCGTTGATA TTCCGCGTGC ATGGAACAAC CACGAGTGGA TTCAAGCATT 361 TGAGAAGTTT CTAGATGCTA TTGATGTTCA TCATATTCAT CTCTATGGAA CAGCCCTTGG 421 AGGCTTCTTA GCACAACTTT TTGCTCAGCA TCGTCCCCGG CGTGTTAGGT CCTTGGTACT 481 TTCAAATACA TTTGTGGAGA CCACTAGTTT CTCAGCTTCA ATGCCATGGG CTCGTATTGT 541 TGGTTGGGCT CCTGCTTTTA TACTGAAACG GCATGTGCTA AGTGGAATTC GTGATAGTCC 601 CC Predicted gene structure (within gDNA segment 129029 to 135482): Exon 1 129629 129796 ( 168 n); cDNA 1 169 ( 169 n); score: 0.985 Intron 1 129797 130848 (1052 n); Pd: 0.940 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 130849 130974 ( 126 n); cDNA 170 295 ( 126 n); score: 1.000 Intron 2 130975 132259 (1285 n); Pd: 0.968 (s: 1.00), Pa: 0.915 (s: 1.00) Exon 3 132260 132358 ( 99 n); cDNA 296 394 ( 99 n); score: 1.000 Intron 3 132359 134415 (2057 n); Pd: 0.791 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 4 134416 134558 ( 143 n); cDNA 395 537 ( 143 n); score: 1.000 Intron 4 134559 134807 ( 249 n); Pd: 0.893 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 134808 134872 ( 65 n); cDNA 538 602 ( 65 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E271597+ 0.996 601 0.998 C PGS_C08HBa0060C12.1+_SGN-E271597+ (129629 129796,130849 130974,132260 132358,134416 134558,134808 134872) Alignment (genomic DNA sequence = upper lines): AGGAAGATGA G-TTTTTTTT TTTCTTCTTG TTATAGAACA AATTCAAGAA CTTTAATGGG 129687 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGATGA GTTTTTTTTT TTTCTTCTTG TTATAGAACA AATTCAAGAA CTTTAATGGG 60 TGGGTATATG CAGTGAAAGG TGAATAAATC AGCTATGAAA GGAGGTGTCC TTTCGGCTCC 129747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTATATG CAGTGAAAGG TGAATAAATC AGCTATGAAA GGAGGTGTCC TTTCGGCTCC 120 TGGTGATTAC ATCTACTTCA AGTCTCAAGT TCCTCTTCAC AAGATCCCTG TAATGCCTGA 129807 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGGTGATTAC ATCTACTTCA AGTCTCAAGT TCCTCTTCAC AAGATCCCT. .......... 169 TTCCATCAAT TTTTAGTTTT TTCTGATTTG GGTTTTCTTC GATTTTGCTT AACTGTTTGG 129867 .......... .......... .......... .......... .......... .......... 169 TTTCTCAAAT GGGTCTGTGT CTTTTTTCTA TTTGATTGTG TTTTTGTTTG TTTTCTTGAA 129927 .......... .......... .......... .......... .......... .......... 169 TTTCTATGAA TCTGAATGTA TGATCATGTT GTGATTTGCC CAATTGGATA GTCGTTTCTG 129987 .......... .......... .......... .......... .......... .......... 169 ATGTGTTTTT TTTCCTTCCT ATTTTGCTTG AATCTATTGT GACTGGTAGG TGGCCAATGA 130047 .......... .......... .......... .......... .......... .......... 169 GTATCCCAAG TAAATTGGCA TGATCGCTGT TGTTTATAGA AACATGAATG TGACTGGTAG 130107 .......... .......... .......... .......... .......... .......... 169 GTGGACAATG AGTATCACAA GTAAATTGGC ATGATAGCTG TTGTTTATAG GAAACATGAA 130167 .......... .......... .......... .......... .......... .......... 169 GTGTGTTCCT TGTGAGTACT GGATAAGACT CTGCTTTTGT TCCTGAAAAA TCAACTGAAT 130227 .......... .......... .......... .......... .......... .......... 169 TTCTTTAAGT TGCTATAGTT ATCATTTTTA ACTCTGAAAC AACTTTGCCC TGAATTGGCA 130287 .......... .......... .......... .......... .......... .......... 169 TCATGGCAAT TGTAGTGATG CCTTATCAAA TTCCCTGTTA TGCAGATTAG GTTAGTTTCC 130347 .......... .......... .......... .......... .......... .......... 169 ATTTAGTTAG TCGCAATAGA ATTTGCACTT TTTTTGGAAA TCTTGCAAAA CCTGTTATCT 130407 .......... .......... .......... .......... .......... .......... 169 TGTAGTTGGT CGATTAGTTT GTGCGTGAAT AATGTTGGAG TGTTTTATGT GTTTTCCATC 130467 .......... .......... .......... .......... .......... .......... 169 AAATAGGAAA AACGTCTCGT GCTAATCACA GTGGAATGGC AAATCTAAGT TTATATTAAG 130527 .......... .......... .......... .......... .......... .......... 169 ATTCTTCTCT TTCTAAATAT TTGGTCCTGC ACTTCATTCT ACTCTTTTTG CTTACTTTTC 130587 .......... .......... .......... .......... .......... .......... 169 GAAAATTTTG CTAGTTGGAA GACTACCTTC GTTTTTCAGA TGAAGAAGAT GGCTACTTTC 130647 .......... .......... .......... .......... .......... .......... 169 TTGAATTTGA TGTTGTCTAT TGATCTTAAG TTCTTCGGCC CTCTTTTGGA GGTCCTTGCA 130707 .......... .......... .......... .......... .......... .......... 169 GTTATTCTAA AGATTATGTT CGATTCTACA CATTTGACTT TGATTATTGC TTCTTTATTT 130767 .......... .......... .......... .......... .......... .......... 169 AGGTAGTAGA GGTGCATAAA TGGACTGGTC TACTCTTTGT TAAATGTACT ATTATTCTTA 130827 .......... .......... .......... .......... .......... .......... 169 ACACTTTGAT CTGTTGGGCA GATTGGATCA AAGCAGTGGC GATATTATGA TTTTGGCCCG 130887 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .ATTGGATCA AAGCAGTGGC GATATTATGA TTTTGGCCCG 208 AAAGTAGTTC CCCCACTCAT TTGCCTCCCT GGCATAGCTG GTACTGCTGA TGTATATTAC 130947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTAGTTC CCCCACTCAT TTGCCTCCCT GGCATAGCTG GTACTGCTGA TGTATATTAC 268 AAGCAGATAA TGTCATTGTC TATGAAGGTA ATGAGGAAAA CTCCTGATTC TTTGCTTGTT 131007 |||||||||| |||||||||| ||||||| AAGCAGATAA TGTCATTGTC TATGAAG... .......... .......... .......... 295 TTATCTAGTT ATTGCTGAAT TTTTGTGTAT CTTCTTTGAG AGTGAAAATG ACAGTGAAGA 131067 .......... .......... .......... .......... .......... .......... 295 ACGGGTCATA TATGTGGTTG TAATCGTTTC ACCCATTCAT AAATATATAT GAATGTAAAG 131127 .......... .......... .......... .......... .......... .......... 295 GATCAGTTAA TCTCTTAAAC TTGCACCTGT TATGTCTTTC CCATGTTACT TACTATGGTA 131187 .......... .......... .......... .......... .......... .......... 295 ACTTCCAAAA TTAGTCAAAG GTACCAATGA GCGTTTCCAA ATGATTAGAA CTGTGTTAGA 131247 .......... .......... .......... .......... .......... .......... 295 ACCTATGTTG CTTGGACTCT CTTAAAAATT TTGTTGCAAC TTGCACACAG ATCCTCTAAA 131307 .......... .......... .......... .......... .......... .......... 295 AATGCACTTC TTTTGGAGGA TGCAACATGC ACCATGTGGC ATTTTTGAAG AGTCTGACTG 131367 .......... .......... .......... .......... .......... .......... 295 TCTGAGCAAC ATAGGTTAGA GCAAAATATG CACTTTAGTA GTGCCTAAAG CTTAAAATCT 131427 .......... .......... .......... .......... .......... .......... 295 ATCATTAAGA AGATGGAAGG AATATAATAA TGATATCTAG TGATAGGGAT TATCACTAGA 131487 .......... .......... .......... .......... .......... .......... 295 AGGTATCACT TGTGAATGAG TCTGTCTCTG TCTCTGTCTC TGTCTCTCTC CTTTTGATTG 131547 .......... .......... .......... .......... .......... .......... 295 AGACCTTACT TAAATATGAG TTCCCAAATT GGGATGTAGA TCTAACAACA GAGGGACCTG 131607 .......... .......... .......... .......... .......... .......... 295 GAATACATCA ATTATTTGAT TGATCTCTTT GCTCTTAGAT GAAAAGTTTT CAACAGCAAA 131667 .......... .......... .......... .......... .......... .......... 295 CGAAAAATTC TATTCACAAT GGAAGTGGTC TTTGATAAGA ACATGGAAAG ATGTTCCAAT 131727 .......... .......... .......... .......... .......... .......... 295 AAAAGCTCAG TAATGCATCA AGTAGTGTAA GTGATAACTA CTGCAGTGTA TGAATTGTAA 131787 .......... .......... .......... .......... .......... .......... 295 CAGAGGTTGC TCATTGTTTA ATGATTTTGC TGGTCAAACT AAGATCCGAG AAAGCACTGG 131847 .......... .......... .......... .......... .......... .......... 295 CCTGCACTGA ATCTTGGAAA ATAGATAACG CTTGCCCCAT TGGCTTGCCC TCTGTACTAC 131907 .......... .......... .......... .......... .......... .......... 295 ATGGACTAAT ATCTTTTTTT TTAAAGGTAA ATGTATTTAC ATGGATTACA ACCTTATTCT 131967 .......... .......... .......... .......... .......... .......... 295 TCTTTTTATT TTTACGAGGT AACTGTATTT ACATGGACTT ATCGTGTCAA GTGATGACAC 132027 .......... .......... .......... .......... .......... .......... 295 AAAGCAAAAT AGAATTTTCC ATTTTCTGAA TGATGTTAGA ATCTCTTGCA ACATAATTTT 132087 .......... .......... .......... .......... .......... .......... 295 AGGATCTAAC TAAAGACAAT TTCCATTAGT TGGGGCTGAA AGGTTTTCTT TGCATGTTAC 132147 .......... .......... .......... .......... .......... .......... 295 AACCTATGCA TATATGTCTC TTTCCACGAT ATATAGCGAC TGGATAATTT TCTATAAGAC 132207 .......... .......... .......... .......... .......... .......... 295 AACCCCCAAA TTCAATTGAA GGAAGCTAAC ATCTTCTGGT TTACTTTCTC AGGGTTACCG 132267 |||||||| .......... .......... .......... .......... .......... ..GGTTACCG 303 TGTAATTTCC GTTGATATTC CGCGTGCATG GAACAACCAC GAGTGGATTC AAGCATTTGA 132327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAATTTCC GTTGATATTC CGCGTGCATG GAACAACCAC GAGTGGATTC AAGCATTTGA 363 GAAGTTTCTA GATGCTATTG ATGTTCATCA TGTATGTTCC CTTTATGTCA GTGCTTACTT 132387 |||||||||| |||||||||| |||||||||| | GAAGTTTCTA GATGCTATTG ATGTTCATCA T......... .......... .......... 394 GATGGCTACA AGGGGTGTAC ATGGGGCGGT TTGGTTCAGT TTTTATCAAA ACCAAACCAA 132447 .......... .......... .......... .......... .......... .......... 394 ACCAACTATA TCAGTTTGCT TGGTTTTTTG GCACGTGAAT ACTATTTCAA TCTTAATGTT 132507 .......... .......... .......... .......... .......... .......... 394 TCGAGTTATA GATAAAGTTT TGATAAATCA ATATATGTGT AGTAGTAATT TCACGTTAGG 132567 .......... .......... .......... .......... .......... .......... 394 GATCAAGTTC TAATAAATCA ACTAAACTAG TTCAGACTTT GATTGTTCTG TCAGTCTTAA 132627 .......... .......... .......... .......... .......... .......... 394 TTTGCAGTTT GGTTTGTGCA CCCTATAACA TAAGCCTAAG TATGTAGTGA TACCAATCAT 132687 .......... .......... .......... .......... .......... .......... 394 GTTAGGGATC CATGATCAAA GCAATAAAAG TAAGAATGTG TGTAAGCTAA AAGATATAAT 132747 .......... .......... .......... .......... .......... .......... 394 ATGAACGGAA AGATAAAGAT AGACAAATTT AAGAACGAGT TCCTTAATTC AAAGTGGATC 132807 .......... .......... .......... .......... .......... .......... 394 AAGAAATCTA GAATGTCAAG ATGAGCGTAA AGTCATAAAT TAATTCCTAA CAATAACAAT 132867 .......... .......... .......... .......... .......... .......... 394 TAACCTAAAA GAACTAATCA CCTTTGATAG AGAATTAATC AAGAAAATAG GTTTTGGAAC 132927 .......... .......... .......... .......... .......... .......... 394 CCACCCCCCT TTAGAGTATC AAGAACAACA TTAGGCAAAG ACTTGTCACC TTTCTTGAAT 132987 .......... .......... .......... .......... .......... .......... 394 ACCTAAAAGT AACCTTAGTT TTAAGAAGGA ATTAAACTTA CCACCTTTAA GTTGATTCTT 133047 .......... .......... .......... .......... .......... .......... 394 GAAGGTTGAA AAAATTCAAG AGCACTCACA ACATGAGTGC AAAGGAAAAA TCCTCTCAAT 133107 .......... .......... .......... .......... .......... .......... 394 TCAATTGACA ATAATGTATC TATAAATAAA TAAACAATAT ATGCTAAGGG GCATGCAACA 133167 .......... .......... .......... .......... .......... .......... 394 CCCTCCCAAA AAGGCTAGGA AATTAATCCA ATACTACTTT GGGCAACAAG TCCTTTCGGA 133227 .......... .......... .......... .......... .......... .......... 394 AAAAGAAATT TAGTAAATCT ACAATAAAAA GAAATCAAGA GATCTTGGCC AAGGAAACTA 133287 .......... .......... .......... .......... .......... .......... 394 AAAAACATGT AAAAATTTTC TAAGAAATAA GGAAACTTTG ACCAAGAAAA CAAGTAAAAT 133347 .......... .......... .......... .......... .......... .......... 394 TAATGTCACA CTTATTTCCA AAACTACTTA ACAAAATAAG AGAGAAGTAG CAGATGATAT 133407 .......... .......... .......... .......... .......... .......... 394 GGAATTGCAC ACGCCCATCT TGGTCAAGCA CACATCTAAG TAGGCGTGTA TGTTAGCTCT 133467 .......... .......... .......... .......... .......... .......... 394 TTGAAGCATG TATTTAATTT TGGGCTCCTC TTTGGTGTGT ATTTTTTTTC TCAAAAAAAA 133527 .......... .......... .......... .......... .......... .......... 394 AAAATCATCC CCATCTTGGA CTTGACTTGG ATCATGAGAT AAGTGTAGCG CTTAGTCAAA 133587 .......... .......... .......... .......... .......... .......... 394 TCTTCCCCTA CTAGTCGAGA GCTCTTTTTT CACGATAAAC CGGTGTTGTC AAAGATGCGC 133647 .......... .......... .......... .......... .......... .......... 394 TTAAGCCCTA AAGCAAGGCT CAAAACAAGT TAAGCTCTCC GCCTTGCTTA TGTGCGCTTC 133707 .......... .......... .......... .......... .......... .......... 394 AGTGTCGTCA TAAAGGCTCT ACGACAATCT TTTCCTTGCA AATGAGCATT TCCTGAAGTG 133767 .......... .......... .......... .......... .......... .......... 394 GTGACGCTAA ACAAATGGTA TTTCACTTTA TTGTAAAAAA ATTCAATTTC TTTGTCCATA 133827 .......... .......... .......... .......... .......... .......... 394 TATTTGTTGT TCATGCTTAT GTATATTTAT ATTTGCACCT TTTTTCATCA TAGCCCACAC 133887 .......... .......... .......... .......... .......... .......... 394 TTTATTTGCG CTTTCCAATT AAAGCCCCAA CTGACCGTAG AGCTTTTTTG CGTTTCTTTT 133947 .......... .......... .......... .......... .......... .......... 394 CGCTTTCGAT AGCACCAATA AACATCTTCT TGATCTCACA TTGAAGTTCC TGAACTTTGT 134007 .......... .......... .......... .......... .......... .......... 394 CAAGCATCTC CTTAGCCTAC AAGCTCAATC CAAGTCCTTT TTTGGAGTTA TGCCTCAGCC 134067 .......... .......... .......... .......... .......... .......... 394 TACAAGCTCA ATGCAAGTCC TTTTTTGGAG TTATGCCTCC ATGGATGCTA TCATGTAACG 134127 .......... .......... .......... .......... .......... .......... 394 TGTGCAATCT GACTAGTCTT ATTTATCTAC GAGATGAGCA ATTTAGAATT AGTAAGATGC 134187 .......... .......... .......... .......... .......... .......... 394 ACCTATTGAC TTTCTTGATT TATATATGCA GTTAGATATA GTATGCAAAG AAGTGCATAT 134247 .......... .......... .......... .......... .......... .......... 394 AAAGATACAT CTATAAGTTT TTATCTTTTT GTCTGGTCAC TTGTTTGATA TTGGTTTGAT 134307 .......... .......... .......... .......... .......... .......... 394 TATAGTGTTG AATCATGCAT TTCAATTTTT TTATTTGGAA TAAAAGCAGA GATTAAGTTT 134367 .......... .......... .......... .......... .......... .......... 394 GTTCATGATA AAGGAAGTAA CTGATGTATT AAACTTGTCC TACGGCAGAT TCATCTCTAT 134427 || |||||||||| .......... .......... .......... .......... ........AT TCATCTCTAT 406 GGAACAGCCC TTGGAGGCTT CTTAGCACAA CTTTTTGCTC AGCATCGTCC CCGGCGTGTT 134487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACAGCCC TTGGAGGCTT CTTAGCACAA CTTTTTGCTC AGCATCGTCC CCGGCGTGTT 466 AGGTCCTTGG TACTTTCAAA TACATTTGTG GAGACCACTA GTTTCTCAGC TTCAATGCCA 134547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCCTTGG TACTTTCAAA TACATTTGTG GAGACCACTA GTTTCTCAGC TTCAATGCCA 526 TGGGCTCGTA TGTAAGTTTT CAGTTTACTT ATTTAGCATA CCATGAGAGC TGCTAAGTTG 134607 |||||||||| | TGGGCTCGTA T......... .......... .......... .......... .......... 537 CTTTTATAGC TCATATATGA CTGATCAGTA TCGATACTTA ATAACTTCTA CATCTATTTG 134667 .......... .......... .......... .......... .......... .......... 537 ATAAGTTATA GATGATCTAA TATCTTTTTG TATATGTACT ACATCATAAT TCTTGCATCT 134727 .......... .......... .......... .......... .......... .......... 537 CATTGTTTTT ATGATTTAAG CCGTGTAGCT CTTCACATTT TAAAAGATGT TTTTCTTCTA 134787 .......... .......... .......... .......... .......... .......... 537 TTGTTGGTTT CCTACTGCAG TGTTGGTTGG GCTCCTGCTT TTATACTGAA ACGGCATGTG 134847 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... TGTTGGTTGG GCTCCTGCTT TTATACTGAA ACGGCATGTG 577 CTAAGTGGAA TTCGTGATAG TCCCC 134872 |||||||||| |||||||||| ||||| CTAAGTGGAA TTCGTGATAG TCCCC 602 hqPGS_C08HBa0060C12.1+_SGN-E271597+ (129629 129796,130849 130974,132260 132358,134416 134558,134808 134872) ******************************************************************************** EST sequence 213 +strand 566 n (File: SGN-E238014+) 1 TTCTATCTAG GCCTGATGAA GTGAATCTTC ATCTTCAGCT ACACCTGAGA CGTGTTGGTG 61 TTGAAGCTCG ACCTGACTTG ATCCCTGGTG TTCCAAAGGA TGATAGTGGT GGAAGTTCCA 121 AAGAGCCAAA CAACGGAAGA AAGGATGCTG ATGATTCATC AGAAAATGAT AAAAGAGACT 181 CAGAAACTCC TCCTACAGAA AGTGCAGAGC CCCCCTTGGC TCCAGAAGCT ACCGGTTCTC 241 ACGATTTAGA TAACCAACTC CTTAAGATGG CCAAACTCTC CAATGACACA GGTGAATCTG 301 TCACACCTCC TTCAGAAAAT TCATTTTTCC GTGACAAGCA GAACTTACTA GTCTCGAGAG 361 CTATTCTAAA CATCACTTGT GAGATTTTTA TTCTTAATAT GCTGTCCCTT TACTTAGGGA 421 ACTGTACATT AACTGAAAAT GTAGCTGCAA TGTAGACGCT TGATGGGATA GAATTTTTGT 481 TCCTCAGTTT CTTTCTGTAC ATTATGGGTT GGAAAAGTGT CATTGCAAAG ACACTATGAA 541 ATTGAAGACT CAAGTTTGTG TTGGAA Predicted gene structure (within gDNA segment 136483 to 138433): Exon 1 137083 137120 ( 38 n); cDNA 1 38 ( 38 n); score: 1.000 Intron 1 137121 137295 ( 175 n); Pd: 1.000 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 137296 137823 ( 528 n); cDNA 39 566 ( 528 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E238014+ 1.000 566 1.000 C PGS_C08HBa0060C12.1+_SGN-E238014+ (137083 137120,137296 137823) Alignment (genomic DNA sequence = upper lines): TTCTATCTAG GCCTGATGAA GTGAATCTTC ATCTTCAGGT ATAAACTACT TCTTGTTACT 137142 |||||||||| |||||||||| |||||||||| |||||||| TTCTATCTAG GCCTGATGAA GTGAATCTTC ATCTTCAG.. .......... .......... 38 TGTTCATCCA AACATCATTT TCATTTCTTT TTATTCTTTT CTCATTTTAG AATTCAGGTC 137202 .......... .......... .......... .......... .......... .......... 38 TACTATCTAC GAAGAGTTTT TCAAGGTTGA GTAATTTATA AGATAGAATA ATACGTTGCA 137262 .......... .......... .......... .......... .......... .......... 38 ACTAAGTACT TGGTTGTATT TTCATTTTAA CAGCTACACC TGAGACGTGT TGGTGTTGAA 137322 ||||||| |||||||||| |||||||||| .......... .......... .......... ...CTACACC TGAGACGTGT TGGTGTTGAA 65 GCTCGACCTG ACTTGATCCC TGGTGTTCCA AAGGATGATA GTGGTGGAAG TTCCAAAGAG 137382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGACCTG ACTTGATCCC TGGTGTTCCA AAGGATGATA GTGGTGGAAG TTCCAAAGAG 125 CCAAACAACG GAAGAAAGGA TGCTGATGAT TCATCAGAAA ATGATAAAAG AGACTCAGAA 137442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACAACG GAAGAAAGGA TGCTGATGAT TCATCAGAAA ATGATAAAAG AGACTCAGAA 185 ACTCCTCCTA CAGAAAGTGC AGAGCCCCCC TTGGCTCCAG AAGCTACCGG TTCTCACGAT 137502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCTCCTA CAGAAAGTGC AGAGCCCCCC TTGGCTCCAG AAGCTACCGG TTCTCACGAT 245 TTAGATAACC AACTCCTTAA GATGGCCAAA CTCTCCAATG ACACAGGTGA ATCTGTCACA 137562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGATAACC AACTCCTTAA GATGGCCAAA CTCTCCAATG ACACAGGTGA ATCTGTCACA 305 CCTCCTTCAG AAAATTCATT TTTCCGTGAC AAGCAGAACT TACTAGTCTC GAGAGCTATT 137622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCTTCAG AAAATTCATT TTTCCGTGAC AAGCAGAACT TACTAGTCTC GAGAGCTATT 365 CTAAACATCA CTTGTGAGAT TTTTATTCTT AATATGCTGT CCCTTTACTT AGGGAACTGT 137682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAACATCA CTTGTGAGAT TTTTATTCTT AATATGCTGT CCCTTTACTT AGGGAACTGT 425 ACATTAACTG AAAATGTAGC TGCAATGTAG ACGCTTGATG GGATAGAATT TTTGTTCCTC 137742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTAACTG AAAATGTAGC TGCAATGTAG ACGCTTGATG GGATAGAATT TTTGTTCCTC 485 AGTTTCTTTC TGTACATTAT GGGTTGGAAA AGTGTCATTG CAAAGACACT ATGAAATTGA 137802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTCTTTC TGTACATTAT GGGTTGGAAA AGTGTCATTG CAAAGACACT ATGAAATTGA 545 AGACTCAAGT TTGTGTTGGA A 137823 |||||||||| |||||||||| | AGACTCAAGT TTGTGTTGGA A 566 hqPGS_C08HBa0060C12.1+_SGN-E238014+ (137083 137120,137296 137823) ******************************************************************************** EST sequence 11 +strand 366 n (File: SGN-E350939+) 1 AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 61 TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 121 ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 181 GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 241 ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 301 ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 361 TGTTGG Predicted gene structure (within gDNA segment 136856 to 138431): Exon 1 137456 137821 ( 366 n); cDNA 1 366 ( 366 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E350939+ 1.000 366 1.000 C PGS_C08HBa0060C12.1+_SGN-E350939+ (137456 137821) Alignment (genomic DNA sequence = upper lines): AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 137515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 60 TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 137575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 120 ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 137635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 180 GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 137695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 240 ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 137755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 300 ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 137815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 360 TGTTGG 137821 |||||| TGTTGG 366 hqPGS_C08HBa0060C12.1+_SGN-E350939+ (137456 137821) ******************************************************************************** EST sequence 241 +strand 366 n (File: SGN-E356990+) 1 AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 61 TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 121 ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 181 GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 241 ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 301 ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 361 TGTTGG Predicted gene structure (within gDNA segment 136856 to 138431): Exon 1 137456 137821 ( 366 n); cDNA 1 366 ( 366 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E356990+ 1.000 366 1.000 C PGS_C08HBa0060C12.1+_SGN-E356990+ (137456 137821) Alignment (genomic DNA sequence = upper lines): AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 137515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 60 TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 137575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 120 ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 137635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 180 GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 137695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 240 ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 137755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 300 ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 137815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 360 TGTTGG 137821 |||||| TGTTGG 366 hqPGS_C08HBa0060C12.1+_SGN-E356990+ (137456 137821) ******************************************************************************** EST sequence 243 +strand 366 n (File: SGN-E357117+) 1 AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 61 TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 121 ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 181 GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 241 ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 301 ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 361 TGTTGG Predicted gene structure (within gDNA segment 136856 to 138431): Exon 1 137456 137821 ( 366 n); cDNA 1 366 ( 366 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E357117+ 1.000 366 1.000 C PGS_C08HBa0060C12.1+_SGN-E357117+ (137456 137821) Alignment (genomic DNA sequence = upper lines): AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 137515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGCAGA GCCCCCCTTG GCTCCAGAAG CTACCGGTTC TCACGATTTA GATAACCAAC 60 TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 137575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTAAGAT GGCCAAACTC TCCAATGACA CAGGTGAATC TGTCACACCT CCTTCAGAAA 120 ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 137635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCATTTTT CCGTGACAAG CAGAACTTAC TAGTCTCGAG AGCTATTCTA AACATCACTT 180 GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 137695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGATTTT TATTCTTAAT ATGCTGTCCC TTTACTTAGG GAACTGTACA TTAACTGAAA 240 ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 137755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTAGCTGC AATGTAGACG CTTGATGGGA TAGAATTTTT GTTCCTCAGT TTCTTTCTGT 300 ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 137815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTATGGG TTGGAAAAGT GTCATTGCAA AGACACTATG AAATTGAAGA CTCAAGTTTG 360 TGTTGG 137821 |||||| TGTTGG 366 hqPGS_C08HBa0060C12.1+_SGN-E357117+ (137456 137821) ******************************************************************************** EST sequence 73 +strand 597 n (File: SGN-E317105+) 1 TTTTCTTTAA CTAACTCTCT TTTCTCCTTT GACAATTCAC ACCAATAAAC TCATTTTTCT 61 GTCTCTCCAC TGTGAAGCAC CATTGAAATC CCAATGCAAA AGCTCACTAA TACTTCATAA 121 AAAACTCAAC TTTTCACTCA AATCTGAAAG TTCACAAAGA TCAGAGAAAT GGGGGTTAAT 181 GATTTTGTTT TTATTTTCAT TTTTACTCTG TTTGTTCTTG GATTTTCTTG CATAGAACCT 241 GTTTGTGGAA ATGCTGAGGT GAGAGCTTTA ATGGAGATTA AATCAGCTTT GGACCCAGAA 301 AGCAAGAAAC TTTCTTCATG GACAAGTGAT GGTGATCCAT GTAGTGGTTC TTTTCTTGGA 361 GTGATTTGTA ATGAACATCA TAAAGTAACA AATATTACTC TGACAGATAA AGGACTTACT 421 GGAAAGTTGT CACCAGCAAT TGCTGAGCTG AAGTGTCTGT CTGGTCTGTT CTTGCATTAT 481 AATTCTTTAA CAGGGGAAAT ACCAAAGGAA CTTGGGAATT TGACTGAGTT GAATGATCTT 541 TATCTCAATG TGAACAATCT TTCTGGGATT ATACCACCAG AACTTGGAAA CATGGAA Predicted gene structure (within gDNA segment 143241 to 145047): Exon 1 143841 144437 ( 597 n); cDNA 1 597 ( 597 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E317105+ 1.000 597 1.000 C PGS_C08HBa0060C12.1+_SGN-E317105+ (143841 144437) Alignment (genomic DNA sequence = upper lines): TTTTCTTTAA CTAACTCTCT TTTCTCCTTT GACAATTCAC ACCAATAAAC TCATTTTTCT 143900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTTAA CTAACTCTCT TTTCTCCTTT GACAATTCAC ACCAATAAAC TCATTTTTCT 60 GTCTCTCCAC TGTGAAGCAC CATTGAAATC CCAATGCAAA AGCTCACTAA TACTTCATAA 143960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCTCCAC TGTGAAGCAC CATTGAAATC CCAATGCAAA AGCTCACTAA TACTTCATAA 120 AAAACTCAAC TTTTCACTCA AATCTGAAAG TTCACAAAGA TCAGAGAAAT GGGGGTTAAT 144020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACTCAAC TTTTCACTCA AATCTGAAAG TTCACAAAGA TCAGAGAAAT GGGGGTTAAT 180 GATTTTGTTT TTATTTTCAT TTTTACTCTG TTTGTTCTTG GATTTTCTTG CATAGAACCT 144080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTGTTT TTATTTTCAT TTTTACTCTG TTTGTTCTTG GATTTTCTTG CATAGAACCT 240 GTTTGTGGAA ATGCTGAGGT GAGAGCTTTA ATGGAGATTA AATCAGCTTT GGACCCAGAA 144140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTGGAA ATGCTGAGGT GAGAGCTTTA ATGGAGATTA AATCAGCTTT GGACCCAGAA 300 AGCAAGAAAC TTTCTTCATG GACAAGTGAT GGTGATCCAT GTAGTGGTTC TTTTCTTGGA 144200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAGAAAC TTTCTTCATG GACAAGTGAT GGTGATCCAT GTAGTGGTTC TTTTCTTGGA 360 GTGATTTGTA ATGAACATCA TAAAGTAACA AATATTACTC TGACAGATAA AGGACTTACT 144260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATTTGTA ATGAACATCA TAAAGTAACA AATATTACTC TGACAGATAA AGGACTTACT 420 GGAAAGTTGT CACCAGCAAT TGCTGAGCTG AAGTGTCTGT CTGGTCTGTT CTTGCATTAT 144320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAGTTGT CACCAGCAAT TGCTGAGCTG AAGTGTCTGT CTGGTCTGTT CTTGCATTAT 480 AATTCTTTAA CAGGGGAAAT ACCAAAGGAA CTTGGGAATT TGACTGAGTT GAATGATCTT 144380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCTTTAA CAGGGGAAAT ACCAAAGGAA CTTGGGAATT TGACTGAGTT GAATGATCTT 540 TATCTCAATG TGAACAATCT TTCTGGGATT ATACCACCAG AACTTGGAAA CATGGAA 144437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TATCTCAATG TGAACAATCT TTCTGGGATT ATACCACCAG AACTTGGAAA CATGGAA 597 hqPGS_C08HBa0060C12.1+_SGN-E317105+ (143841 144437) ******************************************************************************** EST sequence 170 -strand 461 n (File: SGN-E354033-) 1 TTTTTTTTTT TAAAGATCAA ATAATGGTAT AAGTTCATTA GCTTCCTCTT ATCACTTTTG 61 AGCTAGAGCT ACAACAATCA ACAACACCAA GTGGTGTCCT TCAAACCATA CAAAGAATTT 121 GTTCAATCCG CCTCATTATG TACAGAAGCA AGTGATGTTG CATAATACAA TAGATAGATA 181 NCTGCAACTC TATCGCTTTG GCACTTGTCT CCCTATGGTT AATAATCATC AACAGCTTTC 241 AACGCGGACA TGTTTCCTTT TTCAACCACC ACTACATCTG TTCAATTCTT CATTTACTAA 301 AACCATACTT GGCCTGCTAT CTGGATCCTC GACAGTGCAA CTTACTGCAA GTTTAGTTAG 361 CATAGTTGCT TCACTTATGG GGAATGTATC CTTGATATTA GGGTCAATGA AGTTCTCAAA 421 GTTACAAGAT TCAGCTGCAA GTCTCATTGA GCAGTCCAGA A Predicted gene structure (within gDNA segment 149025 to 147256): Exon 1 148305 147856 ( 450 n); cDNA 12 461 ( 450 n); score: 0.993 PPA cDNA 11 1 MATCH C08HBa0060C12.1- SGN-E354033- 0.993 450 0.976 C PGS_C08HBa0060C12.1-_SGN-E354033- (148305 147856) Alignment (genomic DNA sequence = upper lines): AAAGATCAAA TAATGGTATA AGTTCATTAG CTTCCTCTTA TCACTTCTGA GCTAGAGCTA 148246 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| AAAGATCAAA TAATGGTATA AGTTCATTAG CTTCCTCTTA TCACTTTTGA GCTAGAGCTA 71 CAACAATCAA CAACACCAAG TGGTGTCCTT CAAACCATAC AAAGAATTTG TTCAATCCGC 148186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAATCAA CAACACCAAG TGGTGTCCTT CAAACCATAC AAAGAATTTG TTCAATCCGC 131 CTCATTATGT ACAGAAGCAA GTGATGTTGC ATAATACAAT AGATAGATAA CTGCAACTCT 148126 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTCATTATGT ACAGAAGCAA GTGATGTTGC ATAATACAAT AGATAGATAN CTGCAACTCT 191 ATCGCTTTGG CACTTGTTTC CCTATGGTTA ATAATCATCA ACAGCTTTCA ACGCGGACAT 148066 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATCGCTTTGG CACTTGTCTC CCTATGGTTA ATAATCATCA ACAGCTTTCA ACGCGGACAT 251 GTTTCCTTTT TCAACCACCA CTACATCTGT TCAATTCTTC ATTTACTAAA ACCATACTTG 148006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCCTTTT TCAACCACCA CTACATCTGT TCAATTCTTC ATTTACTAAA ACCATACTTG 311 GCCTGCTATC TGGATCCTCG ACAGTGCAAC TTACTGCAAG TTTAGTTAGC ATAGTTGCTT 147946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTGCTATC TGGATCCTCG ACAGTGCAAC TTACTGCAAG TTTAGTTAGC ATAGTTGCTT 371 CACTTATGGG GAATGTATCC TTGATATTAG GGTCAATGAA GTTCTCAAAG TTACAAGATT 147886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTATGGG GAATGTATCC TTGATATTAG GGTCAATGAA GTTCTCAAAG TTACAAGATT 431 CAGCTGCAAG TCTCATTGAG CAGTCCAGAA 147856 |||||||||| |||||||||| |||||||||| CAGCTGCAAG TCTCATTGAG CAGTCCAGAA 461 hqPGS_C08HBa0060C12.1-_SGN-E354033- (148305 147856) ******************************************************************************** EST sequence 46 -strand 399 n (File: SGN-E224229-) 1 CCAGGCAATT AAACCAAAGT GGTGGCCTGC TGAATGGTTA TCAGATCAAC AAAGAACAGA 61 GTGCAACTGC ATAGAGTGAA CCTCTATTTA TCGACTGTCC ATCACATCCT GCCAAAGTTG 121 CCTACAACTC CCTTCATGTT TCGGAATTCC CTTTTTTGAG GATCATCAGT TCTTGGATAC 181 GAAGAATGGT AATAATCAGA CGAGAGTTCT TTGAAATAGC AGTTGATGTT TTTGTTGTAC 241 AACTATGTTC TGTTTACTGA TGTAATAATC AAACATGTCG AAGTTAGAAT CACGTAGTAT 301 GTTGGCCGTG TGAGCGCTTA CTCAAACTCA ACTCATTTGG TAAATACTTT TTAATCTGTT 361 CTCACAGCTT CAGTAAAAAA AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 149710 to 147905): Exon 1 149100 148725 ( 376 n); cDNA 1 377 ( 377 n); score: 0.991 PPA cDNA 378 399 MATCH C08HBa0060C12.1- SGN-E224229- 0.991 376 0.942 C PGS_C08HBa0060C12.1-_SGN-E224229- (149100 148725) Alignment (genomic DNA sequence = upper lines): CCAGGCAATT AAACCAGAGT GGTGGCCTGC TGAATGGTTA TCAGATCAAC -AAGAACAGA 149042 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| CCAGGCAATT AAACCAAAGT GGTGGCCTGC TGAATGGTTA TCAGATCAAC AAAGAACAGA 60 GTGCAACTGC ATAGAGTGAA CCTCTATTTA TCGACTGTCC ATCACATCCT GCCAAAGTTG 148982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCAACTGC ATAGAGTGAA CCTCTATTTA TCGACTGTCC ATCACATCCT GCCAAAGTTG 120 CCTACAACTC CCTTCATGTT TCGGAATTCC CTTTTTTGAG GATCATCAGT TCTTGGATAC 148922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACAACTC CCTTCATGTT TCGGAATTCC CTTTTTTGAG GATCATCAGT TCTTGGATAC 180 GAAGAATGGT AATAATCAGA CGAGAGTTCT TTGAAATAGC AGTTGATGTT TTTGTTGTAC 148862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAATGGT AATAATCAGA CGAGAGTTCT TTGAAATAGC AGTTGATGTT TTTGTTGTAC 240 AACTATGTTC TGTTTACTGA TGTAATAATC AAACATGTCG AAGTTAGAAT CACGTAGTAT 148802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTATGTTC TGTTTACTGA TGTAATAATC AAACATGTCG AAGTTAGAAT CACGTAGTAT 300 GTTGGCCGTG TGAGCGCTTA CTCAAACTCA ACTCATTTGG TAAATACTTT TTAATCTGTT 148742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGCCGTG TGAGCGCTTA CTCAAACTCA ACTCATTTGG TAAATACTTT TTAATCTGTT 360 CTCACAGCTT CAGTAAA 148725 |||||||||| ||||||| CTCACAGCTT CAGTAAA 377 hqPGS_C08HBa0060C12.1-_SGN-E224229- (149100 148725) ******************************************************************************** EST sequence 45 -strand 331 n (File: SGN-E224103-) 1 CTGCATAGAG TGAACCTCTA TTTATCGACT GTCCATCACA TCCTGCCAAA GTTGCCTACA 61 ACTCCCCTTC ATGTTTCGGA ATTCCCTTTT TTGAGGATCA TCAGTTCTTG GATACGAAGA 121 ATGGTAATAA TCAGACGAGA GTTCTTTGAA ATAGCAGTTG ATGTTTTTGT TGTACAACTA 181 TGTTCTGTTT ACTGATGTAA TAATCAAACA TGTCGAAGTT AGAATCGCGT AGTATGTTGG 241 CCGTGTGAGC GCTTACTCAA ACTCAACTCA TTTGGTAAAT ACTTTTTAAT CTGTTCCCCC 301 AGCTTCAGTA CCAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 149645 to 147791): Exon 1 149035 148730 ( 306 n); cDNA 1 307 ( 307 n); score: 0.982 PPA cDNA 313 331 MATCH C08HBa0060C12.1- SGN-E224103- 0.982 306 0.924 C PGS_C08HBa0060C12.1-_SGN-E224103- (149035 148730) Alignment (genomic DNA sequence = upper lines): CTGCATAGAG TGAACCTCTA TTTATCGACT GTCCATCACA TCCTGCCAAA GTTGCCTACA 148976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCATAGAG TGAACCTCTA TTTATCGACT GTCCATCACA TCCTGCCAAA GTTGCCTACA 60 ACT-CCCTTC ATGTTTCGGA ATTCCCTTTT TTGAGGATCA TCAGTTCTTG GATACGAAGA 148917 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCCCCTTC ATGTTTCGGA ATTCCCTTTT TTGAGGATCA TCAGTTCTTG GATACGAAGA 120 ATGGTAATAA TCAGACGAGA GTTCTTTGAA ATAGCAGTTG ATGTTTTTGT TGTACAACTA 148857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTAATAA TCAGACGAGA GTTCTTTGAA ATAGCAGTTG ATGTTTTTGT TGTACAACTA 180 TGTTCTGTTT ACTGATGTAA TAATCAAACA TGTCGAAGTT AGAATCACGT AGTATGTTGG 148797 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TGTTCTGTTT ACTGATGTAA TAATCAAACA TGTCGAAGTT AGAATCGCGT AGTATGTTGG 240 CCGTGTGAGC GCTTACTCAA ACTCAACTCA TTTGGTAAAT ACTTTTTAAT CTGTTCTCAC 148737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| | | CCGTGTGAGC GCTTACTCAA ACTCAACTCA TTTGGTAAAT ACTTTTTAAT CTGTTCCCCC 300 AGCTTCA 148730 ||||||| AGCTTCA 307 hqPGS_C08HBa0060C12.1-_SGN-E224103- (149035 148730) ******************************************************************************** EST sequence 373 +strand 237 n (File: SGN-E207156+) 1 AGCTTGATCG AACTGGTTCA GGGCCTGGCC CTGATTCTGG GGAGCTGGAA TTGTTTGCTG 61 ATGTTGATGG TTCTGAATTG GACGAGCTTC TGCAGACACT GAAAAAGTAT CGGTTGAGGT 121 CTAAGGTTGA AATACAGAGC GTGGTTGATG ATTTCTCTTG CTGGCAGAGG TTTGGCCAAT 181 ATTTAACTCA TAAGTCCTCT GAAGAGCCAT ATGCTGACTC CCTTGGATGG GGTGGTG Predicted gene structure (within gDNA segment 154178 to 149705): Exon 1 153578 153473 ( 106 n); cDNA 1 106 ( 106 n); score: 1.000 Intron 1 153472 150446 (3027 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 2 150445 150315 ( 131 n); cDNA 107 237 ( 131 n); score: 0.969 MATCH C08HBa0060C12.1- SGN-E207156+ 0.983 237 1.000 C PGS_C08HBa0060C12.1-_SGN-E207156+ (153578 153473,150445 150315) Alignment (genomic DNA sequence = upper lines): AGCTTGATCG AACTGGTTCA GGGCCTGGCC CTGATTCTGG GGAGCTGGAA TTGTTTGCTG 153519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGATCG AACTGGTTCA GGGCCTGGCC CTGATTCTGG GGAGCTGGAA TTGTTTGCTG 60 ATGTTGATGG TTCTGAATTG GACGAGCTTC TGCAGACACT GAAAAAGTGA GTTTCCAAGT 153459 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATGTTGATGG TTCTGAATTG GACGAGCTTC TGCAGACACT GAAAAA.... .......... 106 TTTGAGCTTA TGTAATTTTG CATATTAAAT TGAAGTTAAA TTGTGATAAA AGAAGTTGGA 153399 .......... .......... .......... .......... .......... .......... 106 TGAGCATATT TGTAAATGTA GCTGTGGGGT GTATCAGCAT GGAATTGATT AATTGATTGT 153339 .......... .......... .......... .......... .......... .......... 106 TGCTCAAGGA TAAACATAGA TGATTTGATG CATTCATATG AAGGTATAAT AAGTAAAGTT 153279 .......... .......... .......... .......... .......... .......... 106 GTTCTCCCCT GACAATGCAG GGCAGTGTAA GGTTGTCTAC ATAGTAGTTA TGAAAAGGAA 153219 .......... .......... .......... .......... .......... .......... 106 AACAACAGTG ACGGAAACAT AGCAACTAGT TAGAAAATAG TAACAACAAC AAAATGGTGC 153159 .......... .......... .......... .......... .......... .......... 106 GATAACGTAG ACACAAGAAA CAACAGTAGA CAGTAGAAAT GAAAAAACAA GACACTACAA 153099 .......... .......... .......... .......... .......... .......... 106 GAATAAGGCT GGTACTATGA AAAGCACAAT CCCAAACTCG TTGAAAAGCA AGACAATACT 153039 .......... .......... .......... .......... .......... .......... 106 CCACTACCTA CCAACCTTCT AAAGTAGTAC GCACTACCGA TGAATGTTCT ATAGTAATAT 152979 .......... .......... .......... .......... .......... .......... 106 GCAATCTCCA CACCCTCCTA CCTAACATAG GGTTGAAGTA GCTAATGGAC TTGACTCACC 152919 .......... .......... .......... .......... .......... .......... 106 TCGACTTCTC TAACTCCTTC CTCTCAGATC AAATCCATGT TACAAACATT GCGATAATCA 152859 .......... .......... .......... .......... .......... .......... 106 GGGAAACTAT TGTAATGAGA ATCTATGCAG AATTGGTATC TTCAGTGAGA GAGTCATAGG 152799 .......... .......... .......... .......... .......... .......... 106 TATGTGATGG AGCAAGCTGA GTGAAAAAGA GATCCACTCC CTGAGCAAAA ATGGAGTGGT 152739 .......... .......... .......... .......... .......... .......... 106 TGACTTCAGC TTTGTTGGTA TAGCTTTTAT GTTTCTAAAA GGCCTTCCAC TTTAAGGGTA 152679 .......... .......... .......... .......... .......... .......... 106 TGTGTGGTAT AAGCAGGGTA ACCATCAAAT CAGTATGAAG AACCAACCAT TCATAATTAC 152619 .......... .......... .......... .......... .......... .......... 106 CTCAGATAGA AACCAGGATC AGAACAAAAC TTCTGAGAAA CCCGAATTAG TAAATGCTAG 152559 .......... .......... .......... .......... .......... .......... 106 TCGAATGTTG TATTTATTAT GCAGTTAGGT ATATAGAGAA GCCTGAATGG ACAAAACAGT 152499 .......... .......... .......... .......... .......... .......... 106 TCTTCCAACC AGTATATGTT GGAAAGTAAG ATGTAATCTG TCGAAGATGC TTCCCAGGAA 152439 .......... .......... .......... .......... .......... .......... 106 AGATGTGAGG TAGACCTTAG TTTCTATCAT CATTGGCACA TTCATCAGAA CATATTCAGA 152379 .......... .......... .......... .......... .......... .......... 106 TATCGTCAAC GAAAAGTCTA TGTGCAACCA CTGGGAAGTA TGTATATTAT CTTGACACTT 152319 .......... .......... .......... .......... .......... .......... 106 CTTTAACTAG AAAAAATGTG AGACAAATAT ATGTTTACAT CACTTGAGTG AATCTACTTA 152259 .......... .......... .......... .......... .......... .......... 106 CTAGCTTGAT TTTTTTTCTT TTGTTGATAA AGTAGCTTCA AAGTTCTCTG CCTACGAATC 152199 .......... .......... .......... .......... .......... .......... 106 ATTTTATATA TCATTCTCAA AAAGTTCTTT GCCTACAAAA GAGGTTTTAT GCATGCATAT 152139 .......... .......... .......... .......... .......... .......... 106 ACCACACCTT CTGGCAAAGA ACGAATTATT ATAATGATGT AACTATGTAA TACATGAACA 152079 .......... .......... .......... .......... .......... .......... 106 AAAAGACATC TGGAACGGCT GGAGCTTACC CCCCCTTTTT ATGCTAGAAA AACATATTGG 152019 .......... .......... .......... .......... .......... .......... 106 AAACTTCTTC ATTCTAGCAA CGATGTAGTT TGACAAATTG TATTTGCTGC AATACAAGGT 151959 .......... .......... .......... .......... .......... .......... 106 GCTCTAGCTA ATAGTTAGTT AACCTTTGTT CCTTGCATAC ATTGGAGTGT TATACCTTGT 151899 .......... .......... .......... .......... .......... .......... 106 GATGATTCTT TATTTTATGT AGGGATTGCA TGAGATCCAT CATGATGTCT TGGTGATGTA 151839 .......... .......... .......... .......... .......... .......... 106 AAAAGTGATT TTGACTTCTC ATACTGGCTG TACTAGTGAA TCTAAAATGG TAGCTAGACT 151779 .......... .......... .......... .......... .......... .......... 106 GTTGACTGTT GGGTGTCTGA TCTGATTTTA GATATAAATG ACAGCAAAGA AAGATGTCCC 151719 .......... .......... .......... .......... .......... .......... 106 ATATTAACTC GGTTTACTTG AATACTTTCA ACTCAATCAA AATTAGAAAC TGAACTCAAA 151659 .......... .......... .......... .......... .......... .......... 106 GCTCCATAAA AAACAAAGCT TGAAGTTCTA TGAGATCTTC TCTTCATCCG ACAATGATGA 151599 .......... .......... .......... .......... .......... .......... 106 TGCAAGTGAT GCAGGGCCTG ATGGGTGAAT AATGGATTTC TACCAAAGTT CTAGGAATTT 151539 .......... .......... .......... .......... .......... .......... 106 CATCAGTTCA GTCATCATGG AAGCCCTACA TCACTACCAT CAACAATGTT AGATGGTGAG 151479 .......... .......... .......... .......... .......... .......... 106 ACAAGTAATG TTTCCTTCAC TGCCTGGATT CCCAAGGAAG AAAAAAAAGG GACATTAGAG 151419 .......... .......... .......... .......... .......... .......... 106 CTTATGGACT ATAGACCAAT TAATCTCATT GTGAGCCTTC GAAAAATTTC TCGAAAGTCC 151359 .......... .......... .......... .......... .......... .......... 106 TAGAAGAGAG GCTTAAAGCA GTGATGGTGA AGTTGATCTT GGACACACAG AATGCTTTTC 151299 .......... .......... .......... .......... .......... .......... 106 TTATGCCTCT TTGATTGTAC AAAGTTCTAG ACTGGAAATT GAGGAGGTGC AGGTACTCTG 151239 .......... .......... .......... .......... .......... .......... 106 TGCAAGCTGG ACATCCATAA AGACTTTGAT CAGTTGAACT GTTCGTATCC CATTTCACTA 151179 .......... .......... .......... .......... .......... .......... 106 CTCAAAAAGC AGGGATTTGG ACATAGTTGG ATTAAATTTA ACATCTCCTG GCAAGTACTC 151119 .......... .......... .......... .......... .......... .......... 106 TTTATCTTAG TAACTGAAGC CCTGTGGCTT TTTTTCTCCA CAAAGAGCTG GAGTATTCGT 151059 .......... .......... .......... .......... .......... .......... 106 ACTGGCAAAG GAGGGCCTAA GCAGAATGCT GGATACTGCT GCTAAGCAAA TGAAATGGAT 150999 .......... .......... .......... .......... .......... .......... 106 ATGAAATTTA TACAGTCTCA ATCTCTTATT CTTCTCCCTC GAAATTTTTG AATATTTGGA 150939 .......... .......... .......... .......... .......... .......... 106 AGTGTTTGTC TCGTTGTTGC AGTTCAAACA ATCTTCAACC TTGGTGTTCA AACAATTTGC 150879 .......... .......... .......... .......... .......... .......... 106 AAGTGTTTGT CTCGTTGTTG CAGTTCAAAC AATCTTCAAC CTCGGTATTT TTTTAACCAA 150819 .......... .......... .......... .......... .......... .......... 106 AGGCCTACTT TGACATGGAA ATGATCCATT GATTTGGTGA CACCGATCCG TCCTCTTATG 150759 .......... .......... .......... .......... .......... .......... 106 GGTGGAGATG TCAGTTACGA GGTGAAAGAT CTGAGGATAT GCAGTCGTGA AAGCTGCAAT 150699 .......... .......... .......... .......... .......... .......... 106 TCCTCATAGT TAGACTAATG GTGACTAGTG ATTGGACCAT AAGCCGATGT ACCGTTATTT 150639 .......... .......... .......... .......... .......... .......... 106 CTTTGGATAA GCTGCTGGAA TGGTTCATCT AGAATGCATG CCTGTATTTC CTGGTTCTTA 150579 .......... .......... .......... .......... .......... .......... 106 GAAAATAGTT GTTTGAGGGC TTGAAATAGC AAAATCCAGA AAATGTGTTC TTTGGGATAC 150519 .......... .......... .......... .......... .......... .......... 106 AGTTTCTTGT ACTGTTATTA TTGCATATTG GTTGACTCTT GTGAAATATG TGTGTATATT 150459 .......... .......... .......... .......... .......... .......... 106 ATTGGTTATG CAGGTATCGG TTGAGGTCTA AGGTTGAAAT AGAGAGCGTG GTTGATGATT 150399 ||||||| |||||||||| |||||||||| | |||||||| |||||||||| .......... ...GTATCGG TTGAGGTCTA AGGTTGAAAT ACAGAGCGTG GTTGATGATT 153 TCTCTTGCTG GCAGAGGTTT GGCCAATATT TAACTCAGAA GTCCTCTGAA GAGCCAGATG 150339 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||| ||| TCTCTTGCTG GCAGAGGTTT GGCCAATATT TAACTCATAA GTCCTCTGAA GAGCCATATG 213 CTGCCTCCCT TGGATGGGGT GGTG 150315 ||| |||||| |||||||||| |||| CTGACTCCCT TGGATGGGGT GGTG 237 hqPGS_C08HBa0060C12.1-_SGN-E207156+ (153578 153473,150445 150315) ******************************************************************************** EST sequence 342 +strand 400 n (File: SGN-E253306+) 1 GTGGATCCCC CCGGGCCTGC AGGCGAAAAT GCCGGCCCCC ATGGCTTCCC CGTCTCAAGA 61 CCCGATCCGT TATCCGTTTT ACAGGACCTG ACACCGGTTA AATTCCTTCA GGGTCTTGTT 121 ACCAATGATC TACGGAGGTT AGAAAATCCA CAACCCGAAG ATAGGACCAC TTTGGCCACT 181 ACCAACGCGC CGTTTGTTTC GGTTTCTCCG GTGTATGCTG CTCTTTTGAC TGCTCAAGGA 241 AGGTTTTTGT ATGATATGTT CTTGTATAGG CCGCCTCGAG CTGATGAGAA GCTTGATCGA 301 ACTGGTTCAG GGCCTGGCCC TGATTCTGGG GAGCTGGAAT TGTTTGCTGA TGTTGATGGT 361 TCTGAATTGG ACGAGCTTCT GCAGACACTG AAAAAGTATC Predicted gene structure (within gDNA segment 154671 to 152831): Exon 1 153841 153473 ( 369 n); cDNA 24 395 ( 372 n); score: 0.980 MATCH C08HBa0060C12.1- SGN-E253306+ 0.980 369 0.923 C PGS_C08HBa0060C12.1-_SGN-E253306+ (153841 153473) Alignment (genomic DNA sequence = upper lines): CGAAAATGCC GG-CCCCATG GCTTCCC-GT CTCAAGACCC GATCCGTTAT CCGTTTTACA 153784 |||||||||| || ||||||| ||||||| || |||||||||| |||||||||| |||||||||| CGAAAATGCC GGCCCCCATG GCTTCCCCGT CTCAAGACCC GATCCGTTAT CCGTTTTACA 83 GGACCTGACA -CGGTTAAAT TCCTTCAGGG TCTTGTTACC AATGATCTAC GGAGGTTAGA 153725 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCTGACA CCGGTTAAAT TCCTTCAGGG TCTTGTTACC AATGATCTAC GGAGGTTAGA 143 AAATCCACAA CCCGAAGATA GGACCACTTT GGCCACTACC AACGCGCCGT TTGTTTCGGT 153665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCCACAA CCCGAAGATA GGACCACTTT GGCCACTACC AACGCGCCGT TTGTTTCGGT 203 TTCTCCGGTG TATGCTGCTC TTTTGACTGC TCAAGGAAGG TTTTTGTATG ATATGTTCTT 153605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCGGTG TATGCTGCTC TTTTGACTGC TCAAGGAAGG TTTTTGTATG ATATGTTCTT 263 GTATAGGCCG CCTCGAGCTG ATGAGAAGCT TGATCGAACT GGTTCAGGGC CTGGCCCTGA 153545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATAGGCCG CCTCGAGCTG ATGAGAAGCT TGATCGAACT GGTTCAGGGC CTGGCCCTGA 323 TTCTGGGGAG CTGGAATTGT TTGCTGATGT TGATGGTTCT GAATTGGACG AGCTTCTGCA 153485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGGGAG CTGGAATTGT TTGCTGATGT TGATGGTTCT GAATTGGACG AGCTTCTGCA 383 GACACTGAAA AA 153473 |||||||||| || GACACTGAAA AA 395 hqPGS_C08HBa0060C12.1-_SGN-E253306+ (153841 153473) ******************************************************************************** EST sequence 341 +strand 657 n (File: SGN-E253069+) 1 TTACCGCCCC ACCGCTCCTC CATTTAAGTT ATTCGAAAGC TGTCTAATGT TTTCTCTGTG 61 GGGAATTTCA TCGAACACCT AACACCCAAC ATCTTTTTTT TTTTAATTAT TCAACACCTA 121 ACAGCTAACT TCCTTCTTTA TTCACCACGT AGCACCGTCT AAATCCACGT GTCCGTCAAC 181 CAATTTTCAT ATACCCGCCG TCTTCACCGC TCTGCAACCA CCATCGCCGC CAGCAATGTA 241 CCGTTTGAAA CGATCTCTTC ATTTCTTCAA ACCCAAAAAT TCAACTTTTA TCAATTCTTC 301 CATACGCTTC TCTCATCAAT CCCAGCTCGA AAATGCCGGC CCCATGGCTT CCCGTCTCAA 361 GACCCGATCC GTTATCCGTT TTACAGGACC TGACACGGTT AAATTCCTTC AGGGTCTTGT 421 TACCAATGAT CTACGGAGGT TAGAAAATCC ACAACCCGAA GATAGGACCA CTTTGGCCAC 481 TACCAACGCG CCGTTTGTTT CGGTTTCTCC GGTGTATGCT GCTCTTTTGA CTGCTCAAGG 541 AAGGTTTTTG TATGATATGT TCTTGTATAG GCCGCCTCGA GCTGATGAGA AGCTTGATCG 601 AACTGGTTCA GGGCCTGGCC CTGATTCTGG GGAGCTGGAA TTGTTTGCTG ATGTTGA Predicted gene structure (within gDNA segment 154768 to 152902): Exon 1 154168 153512 ( 657 n); cDNA 1 657 ( 657 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E253069+ 1.000 657 1.000 C PGS_C08HBa0060C12.1-_SGN-E253069+ (154168 153512) Alignment (genomic DNA sequence = upper lines): TTACCGCCCC ACCGCTCCTC CATTTAAGTT ATTCGAAAGC TGTCTAATGT TTTCTCTGTG 154109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCGCCCC ACCGCTCCTC CATTTAAGTT ATTCGAAAGC TGTCTAATGT TTTCTCTGTG 60 GGGAATTTCA TCGAACACCT AACACCCAAC ATCTTTTTTT TTTTAATTAT TCAACACCTA 154049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAATTTCA TCGAACACCT AACACCCAAC ATCTTTTTTT TTTTAATTAT TCAACACCTA 120 ACAGCTAACT TCCTTCTTTA TTCACCACGT AGCACCGTCT AAATCCACGT GTCCGTCAAC 153989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCTAACT TCCTTCTTTA TTCACCACGT AGCACCGTCT AAATCCACGT GTCCGTCAAC 180 CAATTTTCAT ATACCCGCCG TCTTCACCGC TCTGCAACCA CCATCGCCGC CAGCAATGTA 153929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTTTCAT ATACCCGCCG TCTTCACCGC TCTGCAACCA CCATCGCCGC CAGCAATGTA 240 CCGTTTGAAA CGATCTCTTC ATTTCTTCAA ACCCAAAAAT TCAACTTTTA TCAATTCTTC 153869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTTGAAA CGATCTCTTC ATTTCTTCAA ACCCAAAAAT TCAACTTTTA TCAATTCTTC 300 CATACGCTTC TCTCATCAAT CCCAGCTCGA AAATGCCGGC CCCATGGCTT CCCGTCTCAA 153809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACGCTTC TCTCATCAAT CCCAGCTCGA AAATGCCGGC CCCATGGCTT CCCGTCTCAA 360 GACCCGATCC GTTATCCGTT TTACAGGACC TGACACGGTT AAATTCCTTC AGGGTCTTGT 153749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCGATCC GTTATCCGTT TTACAGGACC TGACACGGTT AAATTCCTTC AGGGTCTTGT 420 TACCAATGAT CTACGGAGGT TAGAAAATCC ACAACCCGAA GATAGGACCA CTTTGGCCAC 153689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCAATGAT CTACGGAGGT TAGAAAATCC ACAACCCGAA GATAGGACCA CTTTGGCCAC 480 TACCAACGCG CCGTTTGTTT CGGTTTCTCC GGTGTATGCT GCTCTTTTGA CTGCTCAAGG 153629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCAACGCG CCGTTTGTTT CGGTTTCTCC GGTGTATGCT GCTCTTTTGA CTGCTCAAGG 540 AAGGTTTTTG TATGATATGT TCTTGTATAG GCCGCCTCGA GCTGATGAGA AGCTTGATCG 153569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTTTTTG TATGATATGT TCTTGTATAG GCCGCCTCGA GCTGATGAGA AGCTTGATCG 600 AACTGGTTCA GGGCCTGGCC CTGATTCTGG GGAGCTGGAA TTGTTTGCTG ATGTTGA 153512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AACTGGTTCA GGGCCTGGCC CTGATTCTGG GGAGCTGGAA TTGTTTGCTG ATGTTGA 657 hqPGS_C08HBa0060C12.1-_SGN-E253069+ (154168 153512) ******************************************************************************** EST sequence 91 +strand 635 n (File: SGN-E214364+) 1 TTATATTGAT ACTGTTAAAT CTTGTGAGAT TTTTCGAGAA TCGAGTGTAG CGGAGATGAT 61 ATCGGCTATG GCTGCAGGAT GGGATGCTCA GATGATTGTA GAAACATGGT CGAGAGGTGG 121 GGTTATGGCT ACAAGTATTG GGTTGGCTGT GGCAAATTAT CATACAGGTG GTAGGCATAT 181 ATGTGTAGTA CCAGATGAAG ATTCAAGAAC AGAGTATGTA GAAGCTATGG AAAACGCAGG 241 GATGTCGCCG GAAGTTGTGA TCGGAGAACC GGAAGAAGCG ATGGATGGGT TGATTGGGAT 301 TGATTTTTTG GTGGTGGATT GTAGAAGAAA TGATTTCGGT AGAATTTTGG GGGTTGCTAA 361 ATTAGGACAT AGAGGTGCAG TTTTGATTTG TAAAAATGCA AGTTCAAGAA TTGCTTCTGA 421 TTTCAGGTGG CGGAGTGTTC TTGACGGAAA ATCAAGAATT GTTCGCTCGG TTTTTCTGCC 481 GGTAGGTAAA GGTTTGGATA TTGCTCATAT CGGAGCCACC GTGACCGGCG GCGGAAAAAA 541 GGGTGGCTCC GGGAAGACAG AAAGTCGATG GATTAGACAT TTTGATAGAG ATTCAGGGGA 601 AGAATTTGTG ATACGCAAGT GATGACGTCC ATAAT Predicted gene structure (within gDNA segment 159688 to 161730): Exon 1 160406 160427 ( 22 n); cDNA 1 22 ( 22 n); score: 1.000 Intron 1 160428 160507 ( 80 n); Pd: 0.974 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 160508 161120 ( 613 n); cDNA 23 635 ( 613 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E214364+ 1.000 635 1.000 C PGS_C08HBa0060C12.1+_SGN-E214364+ (160406 160427,160508 161120) Alignment (genomic DNA sequence = upper lines): TTATATTGAT ACTGTTAAAT CTGTAAGTAT ATATACAATT TCAACAAATT CCCTTTTTGT 160465 |||||||||| |||||||||| || TTATATTGAT ACTGTTAAAT CT........ .......... .......... .......... 22 TTTTTTCTTT CCCAGTTATT GATTTTCTTG ATTTTGATAC AGTGTGAGAT TTTTCGAGAA 160525 |||||||| |||||||||| .......... .......... .......... .......... ..TGTGAGAT TTTTCGAGAA 40 TCGAGTGTAG CGGAGATGAT ATCGGCTATG GCTGCAGGAT GGGATGCTCA GATGATTGTA 160585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGTGTAG CGGAGATGAT ATCGGCTATG GCTGCAGGAT GGGATGCTCA GATGATTGTA 100 GAAACATGGT CGAGAGGTGG GGTTATGGCT ACAAGTATTG GGTTGGCTGT GGCAAATTAT 160645 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACATGGT CGAGAGGTGG GGTTATGGCT ACAAGTATTG GGTTGGCTGT GGCAAATTAT 160 CATACAGGTG GTAGGCATAT ATGTGTAGTA CCAGATGAAG ATTCAAGAAC AGAGTATGTA 160705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACAGGTG GTAGGCATAT ATGTGTAGTA CCAGATGAAG ATTCAAGAAC AGAGTATGTA 220 GAAGCTATGG AAAACGCAGG GATGTCGCCG GAAGTTGTGA TCGGAGAACC GGAAGAAGCG 160765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTATGG AAAACGCAGG GATGTCGCCG GAAGTTGTGA TCGGAGAACC GGAAGAAGCG 280 ATGGATGGGT TGATTGGGAT TGATTTTTTG GTGGTGGATT GTAGAAGAAA TGATTTCGGT 160825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATGGGT TGATTGGGAT TGATTTTTTG GTGGTGGATT GTAGAAGAAA TGATTTCGGT 340 AGAATTTTGG GGGTTGCTAA ATTAGGACAT AGAGGTGCAG TTTTGATTTG TAAAAATGCA 160885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTTGG GGGTTGCTAA ATTAGGACAT AGAGGTGCAG TTTTGATTTG TAAAAATGCA 400 AGTTCAAGAA TTGCTTCTGA TTTCAGGTGG CGGAGTGTTC TTGACGGAAA ATCAAGAATT 160945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCAAGAA TTGCTTCTGA TTTCAGGTGG CGGAGTGTTC TTGACGGAAA ATCAAGAATT 460 GTTCGCTCGG TTTTTCTGCC GGTAGGTAAA GGTTTGGATA TTGCTCATAT CGGAGCCACC 161005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGCTCGG TTTTTCTGCC GGTAGGTAAA GGTTTGGATA TTGCTCATAT CGGAGCCACC 520 GTGACCGGCG GCGGAAAAAA GGGTGGCTCC GGGAAGACAG AAAGTCGATG GATTAGACAT 161065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACCGGCG GCGGAAAAAA GGGTGGCTCC GGGAAGACAG AAAGTCGATG GATTAGACAT 580 TTTGATAGAG ATTCAGGGGA AGAATTTGTG ATACGCAAGT GATGACGTCC ATAAT 161120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTGATAGAG ATTCAGGGGA AGAATTTGTG ATACGCAAGT GATGACGTCC ATAAT 635 hqPGS_C08HBa0060C12.1+_SGN-E214364+ (160406 160427,160508 161120) ******************************************************************************** EST sequence 192 +strand 476 n (File: SGN-E206853+) 1 TTATATTGAT ACTGTTAAAT CTTGTGAGAT TTTTCGAGAA TCGAGTGTAG CGGAGATGAT 61 ATCGGCTATG GCTGCAGGAT GGGATGCTCA GATGATTGTA GAAACATGGT CGAGAGGTGG 121 GGTTATGGCT ACAAGTATTG GGTTGGCTGT GGCAAATTAT CATACAGGTG GTAGGCATAT 181 ATGTGTAGTA CCAGATGAAG ATTCAAGAAC AGAGTATGTA GAAGCTATGG AAAACGCAGG 241 GATGTCGCCG GAAGTTGTGA TCGGAGAACC GGAAGAAGCG ATGGATGGGT TGATTGGGAT 301 TGATTTTTTG GTGGTGGATT GTAGAAGAAA TGATTTCGGT AGAATTTTGG GGGTTGCTAA 361 ATTAGGACAT AGAGGTGCAG TTTTGATTTG TAAAAATGCA AGTTCAAGAA TTGCTTCTGA 421 TTTCAGGTGG CGGAGTGTTC TTGACGGAAA ATCAAGAATT GTTCGCTCGG TTTTTC Predicted gene structure (within gDNA segment 159688 to 161571): Exon 1 160406 160427 ( 22 n); cDNA 1 22 ( 22 n); score: 1.000 Intron 1 160428 160507 ( 80 n); Pd: 0.974 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 160508 160961 ( 454 n); cDNA 23 476 ( 454 n); score: 1.000 MATCH C08HBa0060C12.1+ SGN-E206853+ 1.000 476 1.000 C PGS_C08HBa0060C12.1+_SGN-E206853+ (160406 160427,160508 160961) Alignment (genomic DNA sequence = upper lines): TTATATTGAT ACTGTTAAAT CTGTAAGTAT ATATACAATT TCAACAAATT CCCTTTTTGT 160465 |||||||||| |||||||||| || TTATATTGAT ACTGTTAAAT CT........ .......... .......... .......... 22 TTTTTTCTTT CCCAGTTATT GATTTTCTTG ATTTTGATAC AGTGTGAGAT TTTTCGAGAA 160525 |||||||| |||||||||| .......... .......... .......... .......... ..TGTGAGAT TTTTCGAGAA 40 TCGAGTGTAG CGGAGATGAT ATCGGCTATG GCTGCAGGAT GGGATGCTCA GATGATTGTA 160585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGTGTAG CGGAGATGAT ATCGGCTATG GCTGCAGGAT GGGATGCTCA GATGATTGTA 100 GAAACATGGT CGAGAGGTGG GGTTATGGCT ACAAGTATTG GGTTGGCTGT GGCAAATTAT 160645 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACATGGT CGAGAGGTGG GGTTATGGCT ACAAGTATTG GGTTGGCTGT GGCAAATTAT 160 CATACAGGTG GTAGGCATAT ATGTGTAGTA CCAGATGAAG ATTCAAGAAC AGAGTATGTA 160705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACAGGTG GTAGGCATAT ATGTGTAGTA CCAGATGAAG ATTCAAGAAC AGAGTATGTA 220 GAAGCTATGG AAAACGCAGG GATGTCGCCG GAAGTTGTGA TCGGAGAACC GGAAGAAGCG 160765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTATGG AAAACGCAGG GATGTCGCCG GAAGTTGTGA TCGGAGAACC GGAAGAAGCG 280 ATGGATGGGT TGATTGGGAT TGATTTTTTG GTGGTGGATT GTAGAAGAAA TGATTTCGGT 160825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATGGGT TGATTGGGAT TGATTTTTTG GTGGTGGATT GTAGAAGAAA TGATTTCGGT 340 AGAATTTTGG GGGTTGCTAA ATTAGGACAT AGAGGTGCAG TTTTGATTTG TAAAAATGCA 160885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTTTGG GGGTTGCTAA ATTAGGACAT AGAGGTGCAG TTTTGATTTG TAAAAATGCA 400 AGTTCAAGAA TTGCTTCTGA TTTCAGGTGG CGGAGTGTTC TTGACGGAAA ATCAAGAATT 160945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCAAGAA TTGCTTCTGA TTTCAGGTGG CGGAGTGTTC TTGACGGAAA ATCAAGAATT 460 GTTCGCTCGG TTTTTC 160961 |||||||||| |||||| GTTCGCTCGG TTTTTC 476 hqPGS_C08HBa0060C12.1+_SGN-E206853+ (160406 160427,160508 160961) ******************************************************************************** EST sequence 382 -strand 247 n (File: SGN-E309603-) 1 TTTTTTTTTT TATAAAAGGA CAATGAATTC CGTGCTAAGA AATTTAAAGG GTTGAACTCG 61 GTACAATAAA AATCTTGAAT CAGCCTCTCA CACACACGAT ACGGGTACAT AAAGAAATGG 121 GCGTCGGCGG TTATTCTTTT CTTTGTAACT ACAGAGGCAA TACTCACCCA AGACCTAAGT 181 TTACCTGGTC CAATATCAAC ATCTTCAGAA AGTACAAGAT ACTTTGATGG CCAATGTCTA 241 CATTCTT Predicted gene structure (within gDNA segment 161710 to 163332): Exon 1 162432 162438 ( 7 n); cDNA 3 9 ( 7 n); score: 0.571 Intron 1 162439 162499 ( 61 n); Pd: 0.685 (s: 0), Pa: 0.000 (s: 0.93) Exon 2 162500 162732 ( 233 n); cDNA 10 247 ( 238 n); score: 0.938 MATCH C08HBa0060C12.1+ SGN-E309603- 0.938 240 0.972 C PGS_C08HBa0060C12.1+_SGN-E309603- (162432 162438,162500 162732) Alignment (genomic DNA sequence = upper lines): TTTAATGGTA TTCGATACTT TTACGTATTT TTGTTGTTTC TTACATATCA CTAAATATGA 162491 ||| | TTTTTTT... .......... .......... .......... .......... .......... 9 ACACATAGTT ATAAAAGTAC AATGAATTCC GTGCTAAGAA ATTTAAA-GG TTGAACTC-G 162549 || ||||||| || |||||||||| |||||||||| ||||||| || |||||||| | ........TT ATAAAAGGAC AATGAATTCC GTGCTAAGAA ATTTAAAGGG TTGAACTCGG 61 TACAATAAAA ATCTTGAATC AGCCTCTCAC ACACACGATA C-GGTACATA AAGAAATGGG 162608 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TACAATAAAA ATCTTGAATC AGCCTCTCAC ACACACGATA CGGGTACATA AAGAAATGGG 121 CGTCTGC-GT TATTCTTTTC TTTGTAACTA CAGAGGCAAT ACTCACCCAA GACCTAAGTT 162667 |||| || || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGGCGGT TATTCTTTTC TTTGTAACTA CAGAGGCAAT ACTCACCCAA GACCTAAGTT 181 TACCT-GTCC AATATCAACA TCTTCAGAAA GTACAAGATA CTTTGATGGC CAATGTCTAC 162726 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTGGTCC AATATCAACA TCTTCAGAAA GTACAAGATA CTTTGATGGC CAATGTCTAC 241 ATTCTT 162732 |||||| ATTCTT 247 hqPGS_C08HBa0060C12.1+_SGN-E309603- (162500 162732) ******************************************************************************** EST sequence 285 +strand 684 n (File: SGN-E577826+) 1 AAAATGGAGG AAGATAAATA ACACCAGAAA AAGAGACAAA AAGTAAAAGA GTAAAAGAAG 61 AAGAAAGAGA CGAAGAAGCA AAAGAGTAAA AAGAAAAAAA GAACGAATCG AAGAAGCAAA 121 AGAATGAAAA GAAGAAGAGG AAAAAGGATT GAGAAAGAGG TGAAAACCGT ACAATTTTCT 181 TAATTCAAAA AAAAAGTTAT TTTTAGTTAG AAAAAATTAT GTTGATATAA ATAGTAAATA 241 TTTTACAATT AGATCATGGG CTTCTAAGAC TCACCATTAT TAGGATTGGG CTTCAATTTT 301 TGCACCGGAA AATGGCATCA TTCAGAACTA CGACAAGCTT TCTCGTACGG GAAATTTTGC 361 GTCCGACAAT ACACTTCCCA AATGTTGTTC GCTTCATCCA CATCTCGCCG GCACCGTACC 421 TGGAGACGAA CCTTGTTGTG AGTCATCGAA TTTTATCACG GAGTCTCTCT TTTAGTCCGG 481 TTAGGTGTGC GGCGGCCTCC AAAGGTGGTG CTGATGATGG AAAGAAGTCT CCGGCGCGGC 541 TTGCTCAGGT TCAACAGCTG TTACATGAAG CTAAGGAGCG ATCTCAAGCT GCAGAAAACG 601 ATCCTATTCC TAAGATTACT CTTGATCACG TGACTGTCAA CTTTGCAAGA AGTGGAGGTC 661 CTGGAGGTCA AAATGTCAAT AAAG Predicted gene structure (within gDNA segment 168460 to 163579): Exon 1 166905 166876 ( 30 n); cDNA 179 207 ( 29 n); score: 0.667 Intron 1 166875 166402 ( 474 n); Pd: 0.000 (s: 0), Pa: 0.742 (s: 0) Exon 2 166401 166368 ( 34 n); cDNA 208 237 ( 30 n); score: 0.647 Intron 2 166367 166093 ( 275 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 3 166092 165706 ( 387 n); cDNA 238 624 ( 387 n); score: 0.984 Intron 3 165705 164249 (1457 n); Pd: 0.960 (s: 0.96), Pa: 0.993 (s: 1.00) Exon 4 164248 164189 ( 60 n); cDNA 625 684 ( 60 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E577826+ 0.987 511 0.747 C PGS_C08HBa0060C12.1-_SGN-E577826+ (166905 166876,166401 166368,166092 165706,164248 164189) Alignment (genomic DNA sequence = upper lines): CTTAATAAAC ATAGGTAGGT TATTCTTTGT CTTGCTCGTT CGATTATAGA ATTGTGAACC 166846 |||||| | | | | || |||| || || CTTAATTCAA AAAAA-AAGT TATTTTTAGT .......... .......... .......... 207 ATCTGCAGGC TCGATTCTGT GAAAATGATG TAAATCAACT TCCAAACAAT TAAAAAAAAG 166786 .......... .......... .......... .......... .......... .......... 207 AGAGGCTATT ATACGGTTCT CTGCTTGTTT TCCTTAAACA TTTCTAACAT TTTGGCCACC 166726 .......... .......... .......... .......... .......... .......... 207 CGCTTCATCA TAATTGTCGT TTCAATTCTT TTTACGCCGA TATAAAGAGT AATAATAATT 166666 .......... .......... .......... .......... .......... .......... 207 ATCTATAAGG TATGGTTTAT CGAGTAGAAT GACTGTTTTT TCTCTTAAAT ATATTTTTTC 166606 .......... .......... .......... .......... .......... .......... 207 TTCGTCAGTG TATTAGAAAG TACAATAGAA AACAATAATC AAGTTTGTCA TAGACCTTTA 166546 .......... .......... .......... .......... .......... .......... 207 AAGGCATAAT ACGTATATTT GATAATAAAC TTGGCTTCAA ATTTTAATTT TGATCTCCAA 166486 .......... .......... .......... .......... .......... .......... 207 CTTTCATAAT GTACAAACAC ACATTTTAAC TATCCAAATT TAAATAAATA AACACGTGAG 166426 .......... .......... .......... .......... .......... .......... 207 TCTTACATGA CACAATACAT GTAGGACAAA AAATGACATG TAGGATGACA AGTAGGACAT 166366 | ||| |||| ||| | ||| | | | ||| | .......... .......... ....TAGAAA AAAT--TATG T-TGAT-ATA AATAGTAA.. 237 GCGTGTATAT TTGTTCAATT TTATACAAGT TTAAGTGTGT ACTTGTGCAC ACCCAAAGTT 166306 .......... .......... .......... .......... .......... .......... 237 AAAGGGCATA AATATCATAA AAATGTAATT CGAAGTCAAA TTAAAGGGCA TATTTATATA 166246 .......... .......... .......... .......... .......... .......... 237 TTATGTCGAT TTTTAAATTG ATAATAATCT TGGGATAAAC TAGTCTTTTT ATGTAGTATA 166186 .......... .......... .......... .......... .......... .......... 237 ATTTGTAGTG TGGTCAGGTG TGAATCAACT TTTAAACCAA CATGATATCT CGAGTAACTT 166126 .......... .......... .......... .......... .......... .......... 237 TCACGATTCC AAGTGGCTTC CTGTATGGGC CACATATTTT ACAATTAGAT CATGGGCTTC 166066 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATATTTT ACAATTAGAT CATGGGCTTC 264 TAAGACTCAC CATTATTAGG ATTGGGCTTC AATTTTTGCA CCGGAAAATG GCATCATTCA 166006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGACTCAC CATTATTAGG ATTGGGCTTC AATTTTTGCA CCGGAAAATG GCATCATTCA 324 GAACTACGAC AAGCTTTCTC GTCCGGGAAA TTTTCCGTCC GTCAATACAC TTCCCAAATG 165946 |||||||||| |||||||||| || ||||||| |||| ||||| | |||||||| |||||||||| GAACTACGAC AAGCTTTCTC GTACGGGAAA TTTTGCGTCC GACAATACAC TTCCCAAATG 384 TTGTTCGCTT CATCCACATC TCGCCGGCAC CGTACCTGGA GACGAACCTT GTTGTGAGTC 165886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCGCTT CATCCACATC TCGCCGGCAC CGTACCTGGA GACGAACCTT GTTGTGAGTC 444 ATCGAATTTT ATCACGGAGT CTCTCTTTTA GTCCGGTTAG GTGTGCGGCG GCGTCCAAAG 165826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ATCGAATTTT ATCACGGAGT CTCTCTTTTA GTCCGGTTAG GTGTGCGGCG GCCTCCAAAG 504 GTGGTGCTGA TGATGGAAAG AAGTCTCCGG CGCGGCTTGC TCAGGTTCAA CAGCTGTTAC 165766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGCTGA TGATGGAAAG AAGTCTCCGG CGCGGCTTGC TCAGGTTCAA CAGCTGTTAC 564 ATGAAGCTAA GGAGCGATCT CAAGCTGCGG GAAACGATCC TATTCCTAAG ATTACTCTTG 165706 |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| |||||||||| ATGAAGCTAA GGAGCGATCT CAAGCTGCAG AAAACGATCC TATTCCTAAG ATTACTCTTG 624 GTATTTCAAA TGTCTCTCTA TATGAATTTC CATCTCCAAT TTTCATTGAC TTCCACTGAA 165646 .......... .......... .......... .......... .......... .......... 624 AATGCCTGGA ATTTATTAAT TGAAAACTTT ACTTTTTCGG GACTTAGAAT AGCATTGTAT 165586 .......... .......... .......... .......... .......... .......... 624 GGAACACCTT ATCCTGTAAA ATGTACATTT TTTTTGCAAG TGTTAAGAGT TTGTTTTGGT 165526 .......... .......... .......... .......... .......... .......... 624 CTATTGGAAA TGAAGGTCCA TTTTTTAAAT GCAGTAACTG TAGTTTAGTG GTACAGCCTT 165466 .......... .......... .......... .......... .......... .......... 624 GAAGCAGATT AGGAACTTAA AATTAGTTAG TGTATCATCT CACATTGAGA TTGTCCCAAT 165406 .......... .......... .......... .......... .......... .......... 624 GGCGTATCCA ATTTATTCTG ATGAAGATAT AGTTGATCTT CACTTCCATT TCCATGTCAG 165346 .......... .......... .......... .......... .......... .......... 624 GGTACTTGAT AATTTCAGAG AGTCGAGCAA ATGAAAATTG TTTACTGACT GATTGCATAT 165286 .......... .......... .......... .......... .......... .......... 624 GATATGGTAT TCAAGAAATC AGCTGTGTGA ATATATTGCC TTACAAGTAA TGTAAAAATG 165226 .......... .......... .......... .......... .......... .......... 624 GCTAAGCTAT AGTGGGCGTT AGCTTGGAAG TTGTATTGTA ATCGGTGTCA TCAAATATTT 165166 .......... .......... .......... .......... .......... .......... 624 TTATGTTGGG TTGAGAGTGC CACTTCTCCA CCAGTGATTT CTTTTTTTAA AAAAAAATTG 165106 .......... .......... .......... .......... .......... .......... 624 GGTTGGGGTC TAGAGTCTTT GTTTACTTGG TCTCAGAATT ATTTGTGATT TTCACCAGAA 165046 .......... .......... .......... .......... .......... .......... 624 AGATTTTGAA GAATTTCTAT GTGAAGCACA GAGAGTAGGG AGTAGGAAAA TTGTCTAGAG 164986 .......... .......... .......... .......... .......... .......... 624 TAGCCACAAA TGTTAAAATA CTTTGGACTG GGACTGCTAT TAAAAAGACT GCTAGAATAT 164926 .......... .......... .......... .......... .......... .......... 624 GTATAGCCTA AGCCTTAGTG AGTAGAGTTG CTGGATACTT GTATTGGTGG ACAAAAGCAA 164866 .......... .......... .......... .......... .......... .......... 624 GTACACGGTG GAATGAGTGA GGTGCACATA AACTGACCCA ACACCACCTT CATTTGAAAA 164806 .......... .......... .......... .......... .......... .......... 624 AGGAAAGAAA GAATGTGTAT TGCTTGACAT CATTGTCAAA GACTATGGGG ATACTAATCA 164746 .......... .......... .......... .......... .......... .......... 624 AATTTGCTCC ACAGGTAGAG TAGGACTAAA GCGACTATTG CCAATTTAAA CTTATTCTGG 164686 .......... .......... .......... .......... .......... .......... 624 GTTTTCTTTT TAACTTCTTA GGACAGAAGT AGTTGGAACT CTACAGTATG AAATTGCTTA 164626 .......... .......... .......... .......... .......... .......... 624 ATATGGCTCT TCTGCTCAGT GAAAAGCCGA AAATCATTTG GAATATCTAA TATTCATCAA 164566 .......... .......... .......... .......... .......... .......... 624 AACCTTTCTT TTTCATGCAT ATTTTCTAAA GAAAGGCCAG GTTTCATACT GACCTATAAA 164506 .......... .......... .......... .......... .......... .......... 624 AGATCTTTGT AACTTTTCTT TGAGAGGACA CAAAGGGGGT GGGGATGTAG AAAAATGAGA 164446 .......... .......... .......... .......... .......... .......... 624 ATGGTTGATC TCTGGTATAT TACATGCTCT CGTCTTTTAT GTTCAATTCA ATTTAGTTTT 164386 .......... .......... .......... .......... .......... .......... 624 TCACATGGAA GAAGTGTTGC TTCTGATTAA TTATTCAGCT TTTTGATCAG GATGTCTTGT 164326 .......... .......... .......... .......... .......... .......... 624 ATTTATTGAA ATTATTGAAC AAAGTAGAAA ATTAAGTCTT TTGGTGGTGT TCTTCTTTGT 164266 .......... .......... .......... .......... .......... .......... 624 CCTATTGTTT GGTCCAGATC ACGTGACTGT CAACTTTGCA AGAAGTGGAG GTCCTGGAGG 164206 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......ATC ACGTGACTGT CAACTTTGCA AGAAGTGGAG GTCCTGGAGG 667 TCAAAATGTC AATAAAG 164189 |||||||||| ||||||| TCAAAATGTC AATAAAG 684 hqPGS_C08HBa0060C12.1-_SGN-E577826+ (166092 165706,164248 164189) ******************************************************************************** EST sequence 401 +strand 302 n (File: SGN-E240893+) 1 TTTTCCGTCC GTCAATACAC TTCCCAAATG TTGTTCGCTT CATCCACATC TCGCCGGCAC 61 CGTACCTGGA GACGAACCTT GTTGTGAGTC ATCGAATTTT ATCACGGAGT CTCTCTTTTA 121 GTCCGGTTAG GTGTGCGGCG GCGTCCAAAG GTGGTGCTGA TGATGGAAAG AAGTCTCCGG 181 CGCGGCTTGC TCAGGTTCAA CAGCTGTTAC ATGAAGCTAA GGAGCGATCT CAAGCTGCGG 241 GAAACGATCC TATTCCTAAG ATTACTCTTG ATCACGTGAC TGTCAACTTT GCAAGAAGTG 301 GA Predicted gene structure (within gDNA segment 166575 to 163607): Exon 1 165975 165706 ( 270 n); cDNA 1 270 ( 270 n); score: 1.000 Intron 1 165705 164249 (1457 n); Pd: 0.960 (s: 1.00), Pa: 0.993 (s: 0) Exon 2 164248 164217 ( 32 n); cDNA 271 302 ( 32 n); score: 1.000 MATCH C08HBa0060C12.1- SGN-E240893+ 1.000 302 1.000 C PGS_C08HBa0060C12.1-_SGN-E240893+ (165975 165706,164248 164217) Alignment (genomic DNA sequence = upper lines): TTTTCCGTCC GTCAATACAC TTCCCAAATG TTGTTCGCTT CATCCACATC TCGCCGGCAC 165916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCGTCC GTCAATACAC TTCCCAAATG TTGTTCGCTT CATCCACATC TCGCCGGCAC 60 CGTACCTGGA GACGAACCTT GTTGTGAGTC ATCGAATTTT ATCACGGAGT CTCTCTTTTA 165856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTACCTGGA GACGAACCTT GTTGTGAGTC ATCGAATTTT ATCACGGAGT CTCTCTTTTA 120 GTCCGGTTAG GTGTGCGGCG GCGTCCAAAG GTGGTGCTGA TGATGGAAAG AAGTCTCCGG 165796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCGGTTAG GTGTGCGGCG GCGTCCAAAG GTGGTGCTGA TGATGGAAAG AAGTCTCCGG 180 CGCGGCTTGC TCAGGTTCAA CAGCTGTTAC ATGAAGCTAA GGAGCGATCT CAAGCTGCGG 165736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGGCTTGC TCAGGTTCAA CAGCTGTTAC ATGAAGCTAA GGAGCGATCT CAAGCTGCGG 240 GAAACGATCC TATTCCTAAG ATTACTCTTG GTATTTCAAA TGTCTCTCTA TATGAATTTC 165676 |||||||||| |||||||||| |||||||||| GAAACGATCC TATTCCTAAG ATTACTCTTG .......... .......... .......... 270 CATCTCCAAT TTTCATTGAC TTCCACTGAA AATGCCTGGA ATTTATTAAT TGAAAACTTT 165616 .......... .......... .......... .......... .......... .......... 270 ACTTTTTCGG GACTTAGAAT AGCATTGTAT GGAACACCTT ATCCTGTAAA ATGTACATTT 165556 .......... .......... .......... .......... .......... .......... 270 TTTTTGCAAG TGTTAAGAGT TTGTTTTGGT CTATTGGAAA TGAAGGTCCA TTTTTTAAAT 165496 .......... .......... .......... .......... .......... .......... 270 GCAGTAACTG TAGTTTAGTG GTACAGCCTT GAAGCAGATT AGGAACTTAA AATTAGTTAG 165436 .......... .......... .......... .......... .......... .......... 270 TGTATCATCT CACATTGAGA TTGTCCCAAT GGCGTATCCA ATTTATTCTG ATGAAGATAT 165376 .......... .......... .......... .......... .......... .......... 270 AGTTGATCTT CACTTCCATT TCCATGTCAG GGTACTTGAT AATTTCAGAG AGTCGAGCAA 165316 .......... .......... .......... .......... .......... .......... 270 ATGAAAATTG TTTACTGACT GATTGCATAT GATATGGTAT TCAAGAAATC AGCTGTGTGA 165256 .......... .......... .......... .......... .......... .......... 270 ATATATTGCC TTACAAGTAA TGTAAAAATG GCTAAGCTAT AGTGGGCGTT AGCTTGGAAG 165196 .......... .......... .......... .......... .......... .......... 270 TTGTATTGTA ATCGGTGTCA TCAAATATTT TTATGTTGGG TTGAGAGTGC CACTTCTCCA 165136 .......... .......... .......... .......... .......... .......... 270 CCAGTGATTT CTTTTTTTAA AAAAAAATTG GGTTGGGGTC TAGAGTCTTT GTTTACTTGG 165076 .......... .......... .......... .......... .......... .......... 270 TCTCAGAATT ATTTGTGATT TTCACCAGAA AGATTTTGAA GAATTTCTAT GTGAAGCACA 165016 .......... .......... .......... .......... .......... .......... 270 GAGAGTAGGG AGTAGGAAAA TTGTCTAGAG TAGCCACAAA TGTTAAAATA CTTTGGACTG 164956 .......... .......... .......... .......... .......... .......... 270 GGACTGCTAT TAAAAAGACT GCTAGAATAT GTATAGCCTA AGCCTTAGTG AGTAGAGTTG 164896 .......... .......... .......... .......... .......... .......... 270 CTGGATACTT GTATTGGTGG ACAAAAGCAA GTACACGGTG GAATGAGTGA GGTGCACATA 164836 .......... .......... .......... .......... .......... .......... 270 AACTGACCCA ACACCACCTT CATTTGAAAA AGGAAAGAAA GAATGTGTAT TGCTTGACAT 164776 .......... .......... .......... .......... .......... .......... 270 CATTGTCAAA GACTATGGGG ATACTAATCA AATTTGCTCC ACAGGTAGAG TAGGACTAAA 164716 .......... .......... .......... .......... .......... .......... 270 GCGACTATTG CCAATTTAAA CTTATTCTGG GTTTTCTTTT TAACTTCTTA GGACAGAAGT 164656 .......... .......... .......... .......... .......... .......... 270 AGTTGGAACT CTACAGTATG AAATTGCTTA ATATGGCTCT TCTGCTCAGT GAAAAGCCGA 164596 .......... .......... .......... .......... .......... .......... 270 AAATCATTTG GAATATCTAA TATTCATCAA AACCTTTCTT TTTCATGCAT ATTTTCTAAA 164536 .......... .......... .......... .......... .......... .......... 270 GAAAGGCCAG GTTTCATACT GACCTATAAA AGATCTTTGT AACTTTTCTT TGAGAGGACA 164476 .......... .......... .......... .......... .......... .......... 270 CAAAGGGGGT GGGGATGTAG AAAAATGAGA ATGGTTGATC TCTGGTATAT TACATGCTCT 164416 .......... .......... .......... .......... .......... .......... 270 CGTCTTTTAT GTTCAATTCA ATTTAGTTTT TCACATGGAA GAAGTGTTGC TTCTGATTAA 164356 .......... .......... .......... .......... .......... .......... 270 TTATTCAGCT TTTTGATCAG GATGTCTTGT ATTTATTGAA ATTATTGAAC AAAGTAGAAA 164296 .......... .......... .......... .......... .......... .......... 270 ATTAAGTCTT TTGGTGGTGT TCTTCTTTGT CCTATTGTTT GGTCCAGATC ACGTGACTGT 164236 ||| |||||||||| .......... .......... .......... .......... .......ATC ACGTGACTGT 283 CAACTTTGCA AGAAGTGGA 164217 |||||||||| ||||||||| CAACTTTGCA AGAAGTGGA 302 hqPGS_C08HBa0060C12.1-_SGN-E240893+ (165975 165706,164248 164217) ******************************************************************************** EST sequence 24 +strand 523 n (File: SGN-E203331+) 1 TTTTTTTTTT TTTTTTTAAG GAAAACAAGC AGAGAACCGT ATAATAGCCT CTCTTTTTTT 61 TAATTGTTTG GAAGTTGATT TACATCATTT TCACAGAATC GAGCCTGCAG ATGGTTCACA 121 ATTCTATAAT CGAACGAGCA AGACAAAGAA TAACCTACCT ATGTTTATTA AGCTGCAAAA 181 CATATTCAAT TAACCAAAAT TATAAGGTAC TAATATTATG TGACTATGTC GAAACATCCC 241 TGACCATTCT CTCTCATACC ACCCAGTTAA AGGAGCGGGA GCGGCCACAC ATTATAACAG 301 CTACACAAAC TTGCTACAAT GATTATTCAA CGGTAGCATG CAGGAAGGAT AACGGCATGA 361 CGTCTTTCTG CAAAAGAAAA GCAGAATAAC AAGATGCTAG AGCAGCTACT ATTCATGACT 421 ACACATTGTG AAGTAGCAAA TGACTTTTGC AACAGATGCA TCAACATTTC TTAGATCGAT 481 CCATATTACT GGCAGTGGTG CCCTTTGAAG AACTCCTCAC ATT Predicted gene structure (within gDNA segment 166008 to 167866): Exon 1 166739 167256 ( 518 n); cDNA 6 523 ( 518 n); score: 0.988 MATCH C08HBa0060C12.1+ SGN-E203331+ 0.988 518 0.990 C PGS_C08HBa0060C12.1+_SGN-E203331+ (166739 167256) Alignment (genomic DNA sequence = upper lines): TTAGAAATGT TTAAGGAAAA CAAGCAGAGA ACCGTATAAT AGCCTCTCTT TTTTTTAATT 166798 || | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT TTAAGGAAAA CAAGCAGAGA ACCGTATAAT AGCCTCTCTT TTTTTTAATT 65 GTTTGGAAGT TGATTTACAT CATTTTCACA GAATCGAGCC TGCAGATGGT TCACAATTCT 166858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGGAAGT TGATTTACAT CATTTTCACA GAATCGAGCC TGCAGATGGT TCACAATTCT 125 ATAATCGAAC GAGCAAGACA AAGAATAACC TACCTATGTT TATTAAGCTG CAAAACATAT 166918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATCGAAC GAGCAAGACA AAGAATAACC TACCTATGTT TATTAAGCTG CAAAACATAT 185 TCAATTAACC AAAATTATAA GGTACTAATA TTATGTGACT ATGTCGAAAC ATCCCTGACC 166978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTAACC AAAATTATAA GGTACTAATA TTATGTGACT ATGTCGAAAC ATCCCTGACC 245 ATTCTCTCTC ATACCACCCA GTTAAAGGAG CGGGAGCGGC CACACATTAT AACAGCTACA 167038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCTCTC ATACCACCCA GTTAAAGGAG CGGGAGCGGC CACACATTAT AACAGCTACA 305 CAAACTTGCT ACAATGATTA TTCAACGGTA GCATGCAGGA AGGATAACGG CATGACGTCT 167098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTTGCT ACAATGATTA TTCAACGGTA GCATGCAGGA AGGATAACGG CATGACGTCT 365 TTCTGCAAAA GAAAAGCAGA ATAACAAGAT GCTAGAGCAG CTACTATTCA TGACTACACA 167158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGCAAAA GAAAAGCAGA ATAACAAGAT GCTAGAGCAG CTACTATTCA TGACTACACA 425 TTGTGAAGTA GCAAATGACT TTTGCAACAG ATGCATCAAC ATTTCTTAGA TCGATCCATA 167218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGAAGTA GCAAATGACT TTTGCAACAG ATGCATCAAC ATTTCTTAGA TCGATCCATA 485 TTACTGGCAG TGGTGCCCTT TGAAGAACTC CTCACATT 167256 |||||||||| |||||||||| |||||||||| |||||||| TTACTGGCAG TGGTGCCCTT TGAAGAACTC CTCACATT 523 hqPGS_C08HBa0060C12.1+_SGN-E203331+ (166739 167256) ******************************************************************************** EST sequence 25 +strand 489 n (File: SGN-E203206+) 1 TTTTTTTTTT TTTTTTTAAG GAAAACAAGC AGAGAACCGT ATAATAGCCT CTCTTTTTTT 61 TAATTGTTTG GAAGTTGATT TACATCATTT TCACAGAATC GAGCCTGCAG ATGGTTCACA 121 ATTCTATAAT CGAACGAGCA AGACAAAGAA TAACCTACCT ATGTTTATTA AGCTGCAAAA 181 CATATTCAAT TAACCAAAAT TATAAGGTAC TAATATTATG TGACTATGTC GAAACATCCC 241 TGACCATTCT CTCTCATACC ACCCAGTTAA AGGAGCGGGA GCGGCCACAC ATTATAACAG 301 CTACACAAAC TTGCTACAAT GATTATTCAA CGGTAGCATG CAGGAAGGAT AACGGCATGA 361 CGTCTTTCTG CAAAAGAAAA GCAGAATAAC AAGATGCTAG AGCAGCTACT ATTCATGACT 421 ACACATTGTG AAGTAGCAAA TGACTTTTGC AACAGATGCA TCAACATTTC TTAGATCGAT 481 CCATATTAC Predicted gene structure (within gDNA segment 166008 to 167832): Exon 1 166739 167222 ( 484 n); cDNA 6 489 ( 484 n); score: 0.988 MATCH C08HBa0060C12.1+ SGN-E203206+ 0.988 484 0.990 C PGS_C08HBa0060C12.1+_SGN-E203206+ (166739 167222) Alignment (genomic DNA sequence = upper lines): TTAGAAATGT TTAAGGAAAA CAAGCAGAGA ACCGTATAAT AGCCTCTCTT TTTTTTAATT 166798 || | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT TTAAGGAAAA CAAGCAGAGA ACCGTATAAT AGCCTCTCTT TTTTTTAATT 65 GTTTGGAAGT TGATTTACAT CATTTTCACA GAATCGAGCC TGCAGATGGT TCACAATTCT 166858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGGAAGT TGATTTACAT CATTTTCACA GAATCGAGCC TGCAGATGGT TCACAATTCT 125 ATAATCGAAC GAGCAAGACA AAGAATAACC TACCTATGTT TATTAAGCTG CAAAACATAT 166918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATCGAAC GAGCAAGACA AAGAATAACC TACCTATGTT TATTAAGCTG CAAAACATAT 185 TCAATTAACC AAAATTATAA GGTACTAATA TTATGTGACT ATGTCGAAAC ATCCCTGACC 166978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTAACC AAAATTATAA GGTACTAATA TTATGTGACT ATGTCGAAAC ATCCCTGACC 245 ATTCTCTCTC ATACCACCCA GTTAAAGGAG CGGGAGCGGC CACACATTAT AACAGCTACA 167038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCTCTC ATACCACCCA GTTAAAGGAG CGGGAGCGGC CACACATTAT AACAGCTACA 305 CAAACTTGCT ACAATGATTA TTCAACGGTA GCATGCAGGA AGGATAACGG CATGACGTCT 167098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTTGCT ACAATGATTA TTCAACGGTA GCATGCAGGA AGGATAACGG CATGACGTCT 365 TTCTGCAAAA GAAAAGCAGA ATAACAAGAT GCTAGAGCAG CTACTATTCA TGACTACACA 167158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGCAAAA GAAAAGCAGA ATAACAAGAT GCTAGAGCAG CTACTATTCA TGACTACACA 425 TTGTGAAGTA GCAAATGACT TTTGCAACAG ATGCATCAAC ATTTCTTAGA TCGATCCATA 167218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGAAGTA GCAAATGACT TTTGCAACAG ATGCATCAAC ATTTCTTAGA TCGATCCATA 485 TTAC 167222 |||| TTAC 489 hqPGS_C08HBa0060C12.1+_SGN-E203206+ (166739 167222) Total number of EST alignments reported: 403 ________________________________________________________________________________ Predicted gene locations (33) in segment 1 to 168460: PGL 1 (- strand): 786 681 AGS-1 (786 681) SCR (e 0.991) Exon 1 786 681 ( 106 n); score: 0.991 PGS (786 681) SGN-E391490- PGS (786 681) SGN-E391444- PGS (786 681) SGN-E396735- PGS (786 681) SGN-E395324- PGS (786 681) SGN-E396750- PGS (786 681) SGN-E396661- PGS (786 681) SGN-E397114- PGS (786 681) SGN-E390817- PGS (786 681) SGN-E397010- PGS (786 681) SGN-E397205- PGS (786 681) SGN-E397267- PGS (786 681) SGN-E396454- PGS (786 681) SGN-E391362- PGS (786 681) SGN-E396899- 3-phase translation of AGS-1 (-strand): . . . . . . 786 AATTCAGGCCACTTGTAGTTCGATAAGCTTGATTTACCGCACGATTTCAAAGAATCAAAA N S G H L - F D K L D L P H D F K E S K I Q A T C S S I S L I Y R T I S K N Q K F R P L V V R - A - F T A R F Q R I K . . . . . 726 GCCACCTCGACACCGAATTATGAAGGTATCGAAATGCTCGAGAATA A T S T P N Y E G I E M L E N P P R H R I M K V S K C S R I S H L D T E L - R Y R N A R E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 681 TATTCTCGAGCATTTCGATACCTTCATAATTCGGTGTCGAGGTGGCTTTTGATTCTTTGA Y S R A F R Y L H N S V S R W L L I L - I L E H F D T F I I R C R G G F - F F E F S S I S I P S - F G V E V A F D S L . . . . . 741 AATCGTGCGGTAAATCAAGCTTATCGAACTACAAGTGGCCTGAATT N R A V N Q A Y R T T S G L N I V R - I K L I E L Q V A - I K S C G K S S L S N Y K W P E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 1980 4187 AGS-1 (1980 2027,2625 2659,2750 4187) SCR (e 0.729 d 1.000 a 0.000,e 0.700 d 0.000 a 0.000,e 0.748) Exon 1 1980 2027 ( 48 n); score: 0.729 Intron 1 2028 2624 ( 597 n); Pd: 1.000 Pa: 0.000 Exon 2 2625 2659 ( 35 n); score: 0.700 Intron 2 2660 2749 ( 90 n); Pd: 0.000 Pa: 0.000 Exon 3 2750 4187 (1438 n); score: 0.748 PGS (1980 2027,2625 2659,2750 2927) SGN-E319215+ PGS (2847 3328) SGN-E312705+ PGS (2847 3326) SGN-E390285+ PGS (2958 3276) SGN-E317062+ PGS (2958 3276) SGN-E317099+ PGS (2977 3224) SGN-E336434+ PGS (2977 3193) SGN-E392487- PGS (3208 3689) SGN-E321973+ PGS (3250 3694) SGN-E316728- PGS (3576 4136) SGN-E356241+ PGS (3846 4187) SGN-E349190+ 3-phase translation of AGS-1 (+strand): . . . . . : . 1980 GAAGTTCTTGCTCTGCTCGATCGTCTCCAGTTCGCTGCTCCGAAAAAG : GTGAATTCTTGT E V L A L L D R L Q F A A P K K : V N S C K F L L C S I V S S S L L R K R : - I L V S S C S A R S S P V R C S E K : G E F L . . . : . . . 2637 TTTATTTTTAGCCTTATTTGGAT : TTTATCGTTCAAGGTGCTAATTCTCTTTTGTTTGTTT F I F S L I W I : L S F K V L I L F C L F L F L A L F G : F Y R S R C - F S F V C L F Y F - P Y L D : F I V Q G A N S L L F V . . . . . . 2787 GATTGCATGTGAAAACTATTCTCGAGTCCTCATGGACCTCACTCCGATTCCTTGAACCTT D C M - K L F S S P H G P H S D S L N L I A C E N Y S R V L M D L T P I P - T F - L H V K T I L E S S W T S L R F L E P . . . . . . 2847 CTCGTTGAGCCATAAAGGCTCAAAACACTTTTTCCGAGTCAGCCAACCCCTGAAAGGATG L V E P - R L K T L F P S Q P T P E R M S L S H K G S K H F F R V S Q P L K G C S R - A I K A Q N T F S E S A N P - K D . . . . . . 2907 TACAGCATCGAAAGAAAACCAGCAGAAACTGCTGGAAAAGTTGTTGCAGGGATTTGAAGA Y S I E R K P A E T A G K V V A G I - R T A S K E N Q Q K L L E K L L Q G F E E V Q H R K K T S R N C W K S C C R D L K . . . . . . 2967 ACATGTATACAGCAGTATACATGTTTTATACATCTGTTATACGCTGATATACAGGTCGAA T C I Q Q Y T C F I H L L Y A D I Q V E H V Y S S I H V L Y I C Y T L I Y R S K N M Y T A V Y M F Y T S V I R - Y T G R . . . . . . 3027 ATGTGCACAGGAGGCCTAATCCGAAATCTGGGTCGATGGCAGTGAAAATACGCTGCTTAA M C T G G L I R N L G R W Q - K Y A A - C A Q E A - S E I W V D G S E N T L L K N V H R R P N P K S G S M A V K I R C L . . . . . . 3087 AATGAATTTTCAACTCTCGAAAGTCGAAAAACAGGCTGATATACAGTCTGTATACACTGA N E F S T L E S R K T G - Y T V C I H - M N F Q L S K V E K Q A D I Q S V Y T D K - I F N S R K S K N R L I Y S L Y T L . . . . . . 3147 TATACAGACACGATATAATATAAATGTGTAAAAAATGTGATTGGCAGGGGAACGTAGAGG Y T D T I - Y K C V K N V I G R G T - R I Q T R Y N I N V - K M - L A G E R R G I Y R H D I I - M C K K C D W Q G N V E . . . . . . 3207 GACGCCTATTCTAATTAAAATTCGGAATTAGGCAAACAATGCGGACGTAGGGTGCAGCCC D A Y S N - N S E L G K Q C G R R V Q P T P I L I K I R N - A N N A D V G C S P G R L F - L K F G I R Q T M R T - G A A . . . . . . 3267 GTATACATTAGTATACATTATCGGGCGACGATATACACTTGTTAAGTAAGTTTTAAAAAT V Y I S I H Y R A T I Y T C - V S F K N Y T L V Y I I G R R Y T L V K - V L K I R I H - Y T L S G D D I H L L S K F - K . . . . . . 3327 TGTACAGGTACAAATACGCAGGGCAATACAGGGAAAAGTAGCGGAAAATATATATTCAAA C T G T N T Q G N T G K S S G K Y I F K V Q V Q I R R A I Q G K V A E N I Y S N L Y R Y K Y A G Q Y R E K - R K I Y I Q . . . . . . 3387 TAGGTGCGGGGATTGAGAGGTCCAAATGGGTCAAATATATGCTGTATACAGCATGTATAC - V R G L R G P N G S N I C C I Q H V Y R C G D - E V Q M G Q I Y A V Y S M Y T I G A G I E R S K W V K Y M L Y T A C I . . . . . . 3447 ACTTGTGTATACTTTGTGATTCTTTTTTCAGGATTGGGCCAGGGCCCTTCAGCCCACCCC T C V Y F V I L F S G L G Q G P S A H P L V Y T L - F F F Q D W A R A L Q P T P H L C I L C D S F F R I G P G P F S P P . . . . . . 3507 CCCTTTATTAACAGGCCCAAAGGCCATTTTTTTTTCTGCAGGTTTTAAAGAAGGCCCAAG P F I N R P K G H F F F C R F - R R P K P L L T G P K A I F F S A G F K E G P S P L Y - Q A Q R P F F F L Q V L K K A Q . . . . . . 3567 TATAAGGATTAGATTAGGACAGGTGGGCCAAAGCCCAATTGAATGAATTTGGGCAATCAA Y K D - I R T G G P K P N - M N L G N Q I R I R L G Q V G Q S P I E - I W A I K V - G L D - D R W A K A Q L N E F G Q S . . . . . . 3627 GCCCAAGTTCAAATATTTCTTTCTCTATTATTTATTTGTTTGAATTATTTAATATCTTGG A Q V Q I F L S L L F I C L N Y L I S W P K F K Y F F L Y Y L F V - I I - Y L G S P S S N I S F S I I Y L F E L F N I L . . . . . . 3687 TAGATTTTTTTTTTTTAAAAAAAAATCTCCTAAAGGGGTAGTCATTTTTCATTATTTAAA - I F F F - K K I S - R G S H F S L F K R F F F F K K K S P K G V V I F H Y L N V D F F F L K K N L L K G - S F F I I - . . . . . . 3747 TTTTATTATTTTTGTTTTTACTTACTTTTATCACAATTTAGTTTTCCTTAAATTAATTCC F Y Y F C F Y L L L S Q F S F P - I N S F I I F V F T Y F Y H N L V F L K L I P I L L F L F L L T F I T I - F S L N - F . . . . . . 3807 CTCAAAATATCTCCCTTTAGAAATAAATAATAATAATAAAAAATAAAATAATAAATATTA L K I S P F R N K - - - - K I K - - I L S K Y L P L E I N N N N K K - N N K Y - P Q N I S L - K - I I I I K N K I I N I . . . . . . 3867 AAATAAATTTTCTTTTTACTTAAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTT K - I F F L L K K S F S Q I A G Q P Q V N K F S F Y L K S H L V K S P V N R K L K I N F L F T - K V I - S N R R S T A S . . . . . . 3927 AGCGGACATCCCGAGGGCCTAATACCTTCTCGGGATGTACATTGAACTTCGAACCTTTGT S G H P E G L I P S R D V H - T S N L C A D I P R A - Y L L G M Y I E L R T F V - R T S R G P N T F S G C T L N F E P L . . . . . . 3987 TTTTCAATTGATTTTAATCTGTTTTAAATCTTTTGAAATTTTTCTTGATTTTATCAAAAT F S I D F N L F - I F - N F S - F Y Q N F Q L I L I C F K S F E I F L D F I K I F F N - F - S V L N L L K F F L I L S K . . . . . . 4047 CAAGTGGCGACTCCGTAATTCGAAAAGTCGATTTTTCTTAAATAATAAGATTAATTGATT Q V A T P - F E K S I F L K - - D - L I K W R L R N S K S R F F L N N K I N - F S S G D S V I R K V D F S - I I R L I D . . . . . . 4107 TTTCGAAACCTAGTCAATGTTTTTTCATTTTTAAAACCAAAAAATAGTTAATAATAATTT F R N L V N V F S F L K P K N S - - - F F E T - S M F F H F - N Q K I V N N N F F S K P S Q C F F I F K T K K - L I I I . . . 4167 TTAAGTAAAACAATTATTAAA L S K T I I K - V K Q L L F K - N N Y - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-2_AGS-1_PPS_1 (2842 3045) (frame '2'; 201 bp, 67 residues) 1 TFSLSHKGSK HFFRVSQPLK GCTASKENQQ KLLEKLLQGF EEHVYSSIHV LYICYTLIYR 61 SKCAQEA- AGS-2 (2221 2244,2468 2495,2979 3262,3334 3679) SCR (e 0.750 d 0.900 a 0.000,e 0.536 d 0.891 a 0.000,e 0.712 d 0.000 a 0.989,e 0.637) Exon 1 2221 2244 ( 24 n); score: 0.750 Intron 1 2245 2467 ( 223 n); Pd: 0.900 Pa: 0.000 Exon 2 2468 2495 ( 28 n); score: 0.536 Intron 2 2496 2978 ( 483 n); Pd: 0.891 Pa: 0.000 Exon 3 2979 3262 ( 284 n); score: 0.712 Intron 3 3263 3333 ( 71 n); Pd: 0.000 Pa: 0.989 Exon 4 3334 3679 ( 346 n); score: 0.637 PGS (2221 2244,2468 2495,2979 3193) SGN-E392751+ PGS (2221 2244,2468 2495,2979 3193) SGN-E240512+ PGS (2221 2244,2468 2495,2979 3193) SGN-E392856- PGS (2221 2244,2468 2495,2979 3193) SGN-E549354- PGS (2977 3262,3334 3679) SGN-E550243- 3-phase translation of AGS-2 (+strand): . . . : . . . : 2221 TCTCCAGTAAATTTGTAAAGTGCT : TCATGTCACATTTACAAAGCTAGAGGAA : CAGTATAC S P V N L - S A : S C H I Y K A R G : T V Y L Q - I C K V L : H V T F T K L E E : Q Y T S S K F V K C : F M S H L Q S - R N : S I . . . . . . 2987 ATGTTTTATACATCTGTTATACGCTGATATACAGGTCGAAATGTGCACAGGAGGCCTAAT M F Y T S V I R - Y T G R N V H R R P N C F I H L L Y A D I Q V E M C T G G L I H V L Y I C Y T L I Y R S K C A Q E A - . . . . . . 3047 CCGAAATCTGGGTCGATGGCAGTGAAAATACGCTGCTTAAAATGAATTTTCAACTCTCGA P K S G S M A V K I R C L K - I F N S R R N L G R W Q - K Y A A - N E F S T L E S E I W V D G S E N T L L K M N F Q L S . . . . . . 3107 AAGTCGAAAAACAGGCTGATATACAGTCTGTATACACTGATATACAGACACGATATAATA K S K N R L I Y S L Y T L I Y R H D I I S R K T G - Y T V C I H - Y T D T I - Y K V E K Q A D I Q S V Y T D I Q T R Y N . . . . . . 3167 TAAATGTGTAAAAAATGTGATTGGCAGGGGAACGTAGAGGGACGCCTATTCTAATTAAAA - M C K K C D W Q G N V E G R L F - L K K C V K N V I G R G T - R D A Y S N - N I N V - K M - L A G E R R G T P I L I K . . . . : . . 3227 TTCGGAATTAGGCAAACAATGCGGACGTAGGGTGCA : GTACAAATACGCAGGGCAATACAG F G I R Q T M R T - G A : V Q I R R A I Q S E L G K Q C G R R V Q : Y K Y A G Q Y R I R N - A N N A D V G C : S T N T Q G N T . . . . . . 3358 GGAAAAGTAGCGGAAAATATATATTCAAATAGGTGCGGGGATTGAGAGGTCCAAATGGGT G K V A E N I Y S N R C G D - E V Q M G E K - R K I Y I Q I G A G I E R S K W V G K S S G K Y I F K - V R G L R G P N G . . . . . . 3418 CAAATATATGCTGTATACAGCATGTATACACTTGTGTATACTTTGTGATTCTTTTTTCAG Q I Y A V Y S M Y T L V Y T L - F F F Q K Y M L Y T A C I H L C I L C D S F F R S N I C C I Q H V Y T C V Y F V I L F S . . . . . . 3478 GATTGGGCCAGGGCCCTTCAGCCCACCCCCCCTTTATTAACAGGCCCAAAGGCCATTTTT D W A R A L Q P T P P L L T G P K A I F I G P G P F S P P P L Y - Q A Q R P F F G L G Q G P S A H P P F I N R P K G H F . . . . . . 3538 TTTTCTGCAGGTTTTAAAGAAGGCCCAAGTATAAGGATTAGATTAGGACAGGTGGGCCAA F S A G F K E G P S I R I R L G Q V G Q F L Q V L K K A Q V - G L D - D R W A K F F C R F - R R P K Y K D - I R T G G P . . . . . . 3598 AGCCCAATTGAATGAATTTGGGCAATCAAGCCCAAGTTCAAATATTTCTTTCTCTATTAT S P I E - I W A I K P K F K Y F F L Y Y A Q L N E F G Q S S P S S N I S F S I I K P N - M N L G N Q A Q V Q I F L S L L . . . 3658 TTATTTGTTTGAATTATTTAAT L F V - I I - Y L F E L F N F I C L N Y L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (- strand): 9333 7766 AGS-1 (8439 7766) SCR (e 1.000) Exon 1 8439 7766 ( 674 n); score: 1.000 PGS (8317 7766) SGN-E308798- PGS (8410 7767) SGN-E539620- PGS (8152 7767) SGN-E390618- PGS (8238 7768) SGN-E296331- PGS (8423 7771) SGN-E356684- PGS (7959 7771) SGN-E282983- PGS (8372 7791) SGN-E283566- PGS (8317 7801) SGN-E304358- PGS (8231 7808) SGN-E308764- PGS (8254 7812) SGN-E309805- PGS (8254 7812) SGN-E308724- PGS (8254 7812) SGN-E311279- PGS (8254 7812) SGN-E545495- PGS (8224 7812) SGN-E311245- PGS (8219 7812) SGN-E311016- PGS (8165 7812) SGN-E311753- PGS (8135 7812) SGN-E282258- PGS (8120 7812) SGN-E305238- PGS (7941 7812) SGN-E278738- PGS (8410 7825) SGN-E539618+ PGS (8329 7850) SGN-E288324- PGS (8423 7881) SGN-E288084- PGS (8242 7918) SGN-E350884- PGS (8242 7925) SGN-E352409- PGS (8242 7925) SGN-E372492- PGS (8242 7925) SGN-E344404- PGS (8242 7925) SGN-E349133- PGS (8242 7925) SGN-E349140- PGS (8242 7925) SGN-E309387- PGS (8242 7925) SGN-E354435- PGS (8242 7925) SGN-E356305- PGS (8238 7925) SGN-E356551- PGS (8227 7925) SGN-E311118- PGS (8227 7925) SGN-E352792- PGS (8227 7925) SGN-E290800- PGS (8227 7925) SGN-E346405- PGS (8227 7925) SGN-E292937- PGS (8227 7925) SGN-E292993- PGS (8227 7925) SGN-E350433- PGS (8227 7925) SGN-E351124- PGS (8227 7925) SGN-E351841- PGS (8227 7925) SGN-E306457- PGS (8227 7925) SGN-E357727- PGS (8226 7925) SGN-E294620- PGS (8226 7925) SGN-E353117- PGS (8226 7925) SGN-E356325- PGS (8223 7925) SGN-E293213- PGS (8196 7925) SGN-E296685- PGS (8193 7925) SGN-E354184- PGS (8191 7925) SGN-E282131- PGS (8163 7925) SGN-E312683- PGS (8242 7928) SGN-E351169- PGS (8242 7932) SGN-E352311- PGS (8439 7956) SGN-E306555- PGS (8242 7958) SGN-E372491+ PGS (8242 7958) SGN-E351727- PGS (8242 7958) SGN-E352335- PGS (8242 7958) SGN-E351524- PGS (8242 7958) SGN-E354313- PGS (8242 7958) SGN-E355403- PGS (8242 7958) SGN-E355433- PGS (8242 7960) SGN-E349814- PGS (8242 7960) SGN-E349712- PGS (8417 7966) SGN-E356988- PGS (8242 7976) SGN-E352458- PGS (8251 8064) SGN-E308938- PGS (8408 8155) SGN-E311342- PGS (8410 8233) SGN-E390858+ 3-phase translation of AGS-1 (-strand): . . . . . . 8439 TTTATAACATCAAACATTTTAACATAAACTTTAAAAGATAGACATTTATTTCATGAAAAG F I T S N I L T - T L K D R H L F H E K L - H Q T F - H K L - K I D I Y F M K R Y N I K H F N I N F K R - T F I S - K . . . . . . 8379 AAGGCAATAACTATAGCCTCCCTTGTAAACAAACTAGAATACAATAAGGAAGTATACTTC K A I T I A S L V N K L E Y N K E V Y F R Q - L - P P L - T N - N T I R K Y T S E G N N Y S L P C K Q T R I Q - G S I L . . . . . . 8319 CTTTTGAAAATAAGCCCACAAAACATCAAATAATACACTGAAAGAAATTGAACTATATGA L L K I S P Q N I K - Y T E R N - T I - F - K - A H K T S N N T L K E I E L Y E P F E N K P T K H Q I I H - K K L N Y M . . . . . . 8259 ATTGAAAATTTGGCTTATTTGCATTGGAAGTTCTTGGGTGCATATTTGCCACAATTGTTA I E N L A Y L H W K F L G A Y L P Q L L L K I W L I C I G S S W V H I C H N C - N - K F G L F A L E V L G C I F A T I V . . . . . . 8199 AGCAACAAGCTAAGTGAAAGTGGGATATTTAGATTAATTCCCAACACATTGGCTTTAAGG S N K L S E S G I F R L I P N T L A L R A T S - V K V G Y L D - F P T H W L - G K Q Q A K - K W D I - I N S Q H I G F K . . . . . . 8139 GCAGTGCAAAGGCAAACAGCAGCATCAAGATCAACAAGTCCTTCAATTAAAGAGCAACAC A V Q R Q T A A S R S T S P S I K E Q H Q C K G K Q Q H Q D Q Q V L Q L K S N T G S A K A N S S I K I N K S F N - R A T . . . . . . 8079 TGAGTCTTGGCTGGACTACTTCCAACAACAAGGTGCAATAAATCACCCAATAAATTGGCA - V L A G L L P T T R C N K S P N K L A E S W L D Y F Q Q Q G A I N H P I N W H L S L G W T T S N N K V Q - I T Q - I G . . . . . . 8019 CAAGCATTTAGTTTTAGTGTGTCCTTTGGGCACTTACCCTTTGATGATGGGGTGGAGGGG Q A F S F S V S F G H L P F D D G V E G K H L V L V C P L G T Y P L M M G W R G T S I - F - C V L W A L T L - - W G G G . . . . . . 7959 GTAGGGGTAGGGTAGTGGGGTTTGGGGTGTGGGGGTGGTGGGCATGGGACATTAGTGGAA V G V G - W G L G C G G G G H G T L V E - G - G S G V W G V G V V G M G H - W N G R G R V V G F G V W G W W A W D I S G . . . . . . 7899 CTAACCATAGTGAAAAAAAGAATGTTCAATGTGAGAACAAGGGCAATTGAGTATGCACCA L T I V K K R M F N V R T R A I E Y A P - P - - K K E C S M - E Q G Q L S M H Q T N H S E K K N V Q C E N K G N - V C T . . . . . . 7839 AACTTAACCATTTTTTCAAAGTTAAGAAGTTAGCACTCTCAACAATTGAATGTGGCTAAT N L T I F S K L R S - H S Q Q L N V A N T - P F F Q S - E V S T L N N - M W L I K L N H F F K V K K L A L S T I E C G - . . 7779 TAGTAGTGAGAAAA - - - E S S E K L V V R K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 7766 TTTTCTCACTACTAATTAGCCACATTCAATTGTTGAGAGTGCTAACTTCTTAACTTTGAA F S H Y - L A T F N C - E C - L L N F E F L T T N - P H S I V E S A N F L T L K F S L L I S H I Q L L R V L T S - L - . . . . . . 7826 AAAATGGTTAAGTTTGGTGCATACTCAATTGCCCTTGTTCTCACATTGAACATTCTTTTT K M V K F G A Y S I A L V L T L N I L F K W L S L V H T Q L P L F S H - T F F F K N G - V W C I L N C P C S H I E H S F . . . . . . 7886 TTCACTATGGTTAGTTCCACTAATGTCCCATGCCCACCACCCCCACACCCCAAACCCCAC F T M V S S T N V P C P P P P H P K P H S L W L V P L M S H A H H P H T P N P T F H Y G - F H - C P M P T T P T P Q T P . . . . . . 7946 TACCCTACCCCTACCCCCTCCACCCCATCATCAAAGGGTAAGTGCCCAAAGGACACACTA Y P T P T P S T P S S K G K C P K D T L T L P L P P P P H H Q R V S A Q R T H - L P Y P Y P L H P I I K G - V P K G H T . . . . . . 8006 AAACTAAATGCTTGTGCCAATTTATTGGGTGATTTATTGCACCTTGTTGTTGGAAGTAGT K L N A C A N L L G D L L H L V V G S S N - M L V P I Y W V I Y C T L L L E V V K T K C L C Q F I G - F I A P C C W K - . . . . . . 8066 CCAGCCAAGACTCAGTGTTGCTCTTTAATTGAAGGACTTGTTGATCTTGATGCTGCTGTT P A K T Q C C S L I E G L V D L D A A V Q P R L S V A L - L K D L L I L M L L F S S Q D S V L L F N - R T C - S - C C C . . . . . . 8126 TGCCTTTGCACTGCCCTTAAAGCCAATGTGTTGGGAATTAATCTAAATATCCCACTTTCA C L C T A L K A N V L G I N L N I P L S A F A L P L K P M C W E L I - I S H F H L P L H C P - S Q C V G N - S K Y P T F . . . . . . 8186 CTTAGCTTGTTGCTTAACAATTGTGGCAAATATGCACCCAAGAACTTCCAATGCAAATAA L S L L L N N C G K Y A P K N F Q C K - L A C C L T I V A N M H P R T S N A N K T - L V A - Q L W Q I C T Q E L P M Q I . . . . . . 8246 GCCAAATTTTCAATTCATATAGTTCAATTTCTTTCAGTGTATTATTTGATGTTTTGTGGG A K F S I H I V Q F L S V Y Y L M F C G P N F Q F I - F N F F Q C I I - C F V G S Q I F N S Y S S I S F S V L F D V L W . . . . . . 8306 CTTATTTTCAAAAGGAAGTATACTTCCTTATTGTATTCTAGTTTGTTTACAAGGGAGGCT L I F K R K Y T S L L Y S S L F T R E A L F S K G S I L P Y C I L V C L Q G R L A Y F Q K E V Y F L I V F - F V Y K G G . . . . . . 8366 ATAGTTATTGCCTTCTTTTCATGAAATAAATGTCTATCTTTTAAAGTTTATGTTAAAATG I V I A F F S - N K C L S F K V Y V K M - L L P S F H E I N V Y L L K F M L K C Y S Y C L L F M K - M S I F - S L C - N . . 8426 TTTGATGTTATAAA F D V I L M L - V - C Y K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-3_AGS-1_PPS_1 (7811 8245) (frame '1'; 432 bp, 144 residues) 1 LLNFEKMVKF GAYSIALVLT LNILFFTMVS STNVPCPPPP HPKPHYPTPT PSTPSSKGKC 61 PKDTLKLNAC ANLLGDLLHL VVGSSPAKTQ CCSLIEGLVD LDAAVCLCTA LKANVLGINL 121 NIPLSLSLLL NNCGKYAPKN FQCK- AGS-2 (9333 9286,8251 7812) SCR (e 0.724 d 0.000 a 0.000,e 0.953) Exon 1 9333 9286 ( 48 n); score: 0.724 Intron 1 9285 8252 (1034 n); Pd: 0.000 Pa: 0.000 Exon 2 8251 7812 ( 440 n); score: 0.953 PGS (9333 9286,8251 7812) SGN-E549216+ PGS (9314 9286,8251 7866) SGN-E353121- 3-phase translation of AGS-2 (-strand): . . . . . : . 9333 CAGCCACTACAACTAAGACCAAATAACAAACTACCGCTAGAAAATCAT : TTTGGCTTATTT Q P L Q L R P N N K L P L E N H : F G L F S H Y N - D Q I T N Y R - K I I : L A Y L A T T T K T K - Q T T A R K S : F W L I . . . . . . 8239 GCATTGGAAGTTCTTGGGTGCATATTTGCCACAATTGTTAAGCAACAAGCTAAGTGAAAG A L E V L G C I F A T I V K Q Q A K - K H W K F L G A Y L P Q L L S N K L S E S C I G S S W V H I C H N C - A T S - V K . . . . . . 8179 TGGGATATTTAGATTAATTCCCAACACATTGGCTTTAAGGGCAGTGCAAAGGCAAACAGC W D I - I N S Q H I G F K G S A K A N S G I F R L I P N T L A L R A V Q R Q T A V G Y L D - F P T H W L - G Q C K G K Q . . . . . . 8119 AGCATCAAGATCAACAAGTCCTTCAATTAAAGAGCAACACTGAGTCTTGGCTGGACTACT S I K I N K S F N - R A T L S L G W T T A S R S T S P S I K E Q H - V L A G L L Q H Q D Q Q V L Q L K S N T E S W L D Y . . . . . . 8059 TCCAACAACAAGGTGCAATAAATCACCCAATAAATTGGCACAAGCATTTAGTTTTAGTGT S N N K V Q - I T Q - I G T S I - F - C P T T R C N K S P N K L A Q A F S F S V F Q Q Q G A I N H P I N W H K H L V L V . . . . . . 7999 GTCCTTTGGGCACTTACCCTTTGATGATGGGGTGGAGGGGGTAGGGGTAGGGTAGTGGGG V L W A L T L - - W G G G G R G R V V G S F G H L P F D D G V E G V G V G - W G C P L G T Y P L M M G W R G - G - G S G . . . . . . 7939 TTTGGGGTGTGGGGGTGGTGGGCATGGGACATTAGTGGAACTAACCATAGTGAAAAAAAG F G V W G W W A W D I S G T N H S E K K L G C G G G G H G T L V E L T I V K K R V W G V G V V G M G H - W N - P - - K K . . . . . . 7879 AATGTTCAATGTGAGAACAAGGGCAATTGAGTATGCACCAAACTTAACCATTTTTTCAAA N V Q C E N K G N - V C T K L N H F F K M F N V R T R A I E Y A P N L T I F S K E C S M - E Q G Q L S M H Q T - P F F Q . 7819 GTTAAGAA V K L R S - E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (8373 8329,8292 7980) SCR (e 0.769 d 0.900 a 0.000,e 0.879) Exon 1 8373 8329 ( 45 n); score: 0.769 Intron 1 8328 8293 ( 36 n); Pd: 0.900 Pa: 0.000 Exon 2 8292 7980 ( 313 n); score: 0.879 PGS (8373 8329,8292 7980) SGN-E288121+ PGS (8354 8329,8292 7981) SGN-E280965+ PGS (8373 8329,8292 8003) SGN-E305779- 3-phase translation of AGS-3 (-strand): . . . . . : . 8373 ATAACTATAGCCTCCCTTGTAAACAAACTAGAATACAATAAGGAA : AAATAATACACTGAA I T I A S L V N K L E Y N K E : K - Y T E - L - P P L - T N - N T I R K : N N T L K N Y S L P C K Q T R I Q - G : K I I H - . . . . . . 8277 AGAAATTGAACTATATGAATTGAAAATTTGGCTTATTTGCATTGGAAGTTCTTGGGTGCA R N - T I - I E N L A Y L H W K F L G A E I E L Y E L K I W L I C I G S S W V H K K L N Y M N - K F G L F A L E V L G C . . . . . . 8217 TATTTGCCACAATTGTTAAGCAACAAGCTAAGTGAAAGTGGGATATTTAGATTAATTCCC Y L P Q L L S N K L S E S G I F R L I P I C H N C - A T S - V K V G Y L D - F P I F A T I V K Q Q A K - K W D I - I N S . . . . . . 8157 AACACATTGGCTTTAAGGGCAGTGCAAAGGCAAACAGCAGCATCAAGATCAACAAGTCCT N T L A L R A V Q R Q T A A S R S T S P T H W L - G Q C K G K Q Q H Q D Q Q V L Q H I G F K G S A K A N S S I K I N K S . . . . . . 8097 TCAATTAAAGAGCAACACTGAGTCTTGGCTGGACTACTTCCAACAACAAGGTGCAATAAA S I K E Q H - V L A G L L P T T R C N K Q L K S N T E S W L D Y F Q Q Q G A I N F N - R A T L S L G W T T S N N K V Q - . . . . . . 8037 TCACCCAATAAATTGGCACAAGCATTTAGTTTTAGTGTGTCCTTTGGGCACTTACCCT S P N K L A Q A F S F S V S F G H L P H P I N W H K H L V L V C P L G T Y P I T Q - I G T S I - F - C V L W A L T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 13437 12694 AGS-1 (13437 12694) SCR (e 0.989) Exon 1 13437 12694 ( 744 n); score: 0.989 PGS (13437 12694) SGN-E338962+ PGS (13424 12895) SGN-E297456+ PGS (13435 13017) SGN-E348956+ 3-phase translation of AGS-1 (-strand): . . . . . . 13437 AAGAAAAATAACAATGGGGAACCATAACCTTCACTTGCTAATAGTACTCTTATCTCTCCA K K N N N G E P - P S L A N S T L I S P R K I T M G N H N L H L L I V L L S L Q E K - Q W G T I T F T C - - Y S Y L S . . . . . . 13377 ATGTTTTCTTGTTCACAACACCATGGCTAAATCAGCCATGGCCTCAAATCCAGCTGCCAT M F S C S Q H H G - I S H G L K S S C H C F L V H N T M A K S A M A S N P A A I N V F L F T T P W L N Q P W P Q I Q L P . . . . . . 13317 TAAATTCATCAAAGTTTCATGTAAAGCCACACTTTACCCTGTTTTATGTGTCCAATGCCT - I H Q S F M - S H T L P C F M C P M P K F I K V S C K A T L Y P V L C V Q C L L N S S K F H V K P H F T L F Y V S N A . . . . . . 13257 CTCTGCTTTCGCCAACACAGTTAAACAGAGCGAGAAGCAACTAGCTCATGCTGCTTTATC L C F R Q H S - T E R E A T S S C C F I S A F A N T V K Q S E K Q L A H A A L S S L L S P T Q L N R A R S N - L M L L Y . . . . . . 13197 AGTTAGTTTAAGCAAAGCAAAATCCACTATCATATTCGTATCGAAGTTAAATAGAATGAG S - F K Q S K I H Y H I R I E V K - N E V S L S K A K S T I I F V S K L N R M R Q L V - A K Q N P L S Y S Y R S - I E - . . . . . . 13137 AGGTCTAAAACCAATAGAAAAACAAGCAGTCAAGGACTGTATGGATACTATGAGTGATAG R S K T N R K T S S Q G L Y G Y Y E - - G L K P I E K Q A V K D C M D T M S D S E V - N Q - K N K Q S R T V W I L - V I . . . . . . 13077 TGTCGATCAGATAAACAAATCAATTCCGGAACTTGGACATACTGGTCAATTTTCAAGCGG C R S D K Q I N S G T W T Y W S I F K R V D Q I N K S I P E L G H T G Q F S S G V S I R - T N Q F R N L D I L V N F Q A . . . . . . 13017 ACAGGATTTCATGTGGCATGTTAGTAATGTACAGACTTGGGTAAGTGCTGCACTTACTGA T G F H V A C - - C T D L G K C C T Y - Q D F M W H V S N V Q T W V S A A L T D D R I S C G M L V M Y R L G - V L H L L . . . . . . 12957 TGAAAGCACTTGTCTTGATGGATTTTCAGGGCCTGGTGTGAATGTAAATGTGAAAGCTGC - K H L S - W I F R A W C E C K C E S C E S T C L D G F S G P G V N V N V K A A M K A L V L M D F Q G L V - M - M - K L . . . . . . 12897 TTTAAGATTAAGAATACTTCATGTTGCACAAGTTACTAGTAATGCACTTGCTTTGGTTAA F K I K N T S C C T S Y - - C T C F G - L R L R I L H V A Q V T S N A L A L V N L - D - E Y F M L H K L L V M H L L W L . . . . . . 12837 TCGATTTGCGGATCGACACCGGCCAAGTCCTTAATGTGACTGAGGCAAGGAGCGTGAATT S I C G S T P A K S L M - L R Q G A - I R F A D R H R P S P - C D - G K E R E F I D L R I D T G Q V L N V T E A R S V N . . . . . . 12777 TGAATTAGTCGATGAGGTTACAAGTTTTGATGTGTAAAGGTTACTTTTTTTTGGGAATTT - I S R - G Y K F - C V K V T F F W E F E L V D E V T S F D V - R L L F F G N F L N - S M R L Q V L M C K G Y F F L G I . . . 12717 TCACAAGCATGAAATTGGGGCTTT S Q A - N W G F H K H E I G A F T S M K L G L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-4_AGS-1_PPS_1 (13436 12804) (frame '2'; 630 bp, 210 residues) 1 RKITMGNHNL HLLIVLLSLQ CFLVHNTMAK SAMASNPAAI KFIKVSCKAT LYPVLCVQCL 61 SAFANTVKQS EKQLAHAALS VSLSKAKSTI IFVSKLNRMR GLKPIEKQAV KDCMDTMSDS 121 VDQINKSIPE LGHTGQFSSG QDFMWHVSNV QTWVSAALTD ESTCLDGFSG PGVNVNVKAA 181 LRLRILHVAQ VTSNALALVN RFADRHRPSP - 3-phase translation of AGS-1 (+strand): . . . . . . 12694 AAAGCCCCAATTTCATGCTTGTGAAAATTCCCAAAAAAAAGTAACCTTTACACATCAAAA K A P I S C L - K F P K K S N L Y T S K K P Q F H A C E N S Q K K V T F T H Q N S P N F M L V K I P K K K - P L H I K . . . . . . 12754 CTTGTAACCTCATCGACTAATTCAAATTCACGCTCCTTGCCTCAGTCACATTAAGGACTT L V T S S T N S N S R S L P Q S H - G L L - P H R L I Q I H A P C L S H I K D L T C N L I D - F K F T L L A S V T L R T . . . . . . 12814 GGCCGGTGTCGATCCGCAAATCGATTAACCAAAGCAAGTGCATTACTAGTAACTTGTGCA G R C R S A N R L T K A S A L L V T C A A G V D P Q I D - P K Q V H Y - - L V Q W P V S I R K S I N Q S K C I T S N L C . . . . . . 12874 ACATGAAGTATTCTTAATCTTAAAGCAGCTTTCACATTTACATTCACACCAGGCCCTGAA T - S I L N L K A A F T F T F T P G P E H E V F L I L K Q L S H L H S H Q A L K N M K Y S - S - S S F H I Y I H T R P - . . . . . . 12934 AATCCATCAAGACAAGTGCTTTCATCAGTAAGTGCAGCACTTACCCAAGTCTGTACATTA N P S R Q V L S S V S A A L T Q V C T L I H Q D K C F H Q - V Q H L P K S V H Y K S I K T S A F I S K C S T Y P S L Y I . . . . . . 12994 CTAACATGCCACATGAAATCCTGTCCGCTTGAAAATTGACCAGTATGTCCAAGTTCCGGA L T C H M K S C P L E N - P V C P S S G - H A T - N P V R L K I D Q Y V Q V P E T N M P H E I L S A - K L T S M S K F R . . . . . . 13054 ATTGATTTGTTTATCTGATCGACACTATCACTCATAGTATCCATACAGTCCTTGACTGCT I D L F I - S T L S L I V S I Q S L T A L I C L S D R H Y H S - Y P Y S P - L L N - F V Y L I D T I T H S I H T V L D C . . . . . . 13114 TGTTTTTCTATTGGTTTTAGACCTCTCATTCTATTTAACTTCGATACGAATATGATAGTG C F S I G F R P L I L F N F D T N M I V V F L L V L D L S F Y L T S I R I - - W L F F Y W F - T S H S I - L R Y E Y D S . . . . . . 13174 GATTTTGCTTTGCTTAAACTAACTGATAAAGCAGCATGAGCTAGTTGCTTCTCGCTCTGT D F A L L K L T D K A A - A S C F S L C I L L C L N - L I K Q H E L V A S R S V G F C F A - T N - - S S M S - L L L A L . . . . . . 13234 TTAACTGTGTTGGCGAAAGCAGAGAGGCATTGGACACATAAAACAGGGTAAAGTGTGGCT L T V L A K A E R H W T H K T G - S V A - L C W R K Q R G I G H I K Q G K V W L F N C V G E S R E A L D T - N R V K C G . . . . . . 13294 TTACATGAAACTTTGATGAATTTAATGGCAGCTGGATTTGAGGCCATGGCTGATTTAGCC L H E T L M N L M A A G F E A M A D L A Y M K L - - I - W Q L D L R P W L I - P F T - N F D E F N G S W I - G H G - F S . . . . . . 13354 ATGGTGTTGTGAACAAGAAAACATTGGAGAGATAAGAGTACTATTAGCAAGTGAAGGTTA M V L - T R K H W R D K S T I S K - R L W C C E Q E N I G E I R V L L A S E G Y H G V V N K K T L E R - E Y Y - Q V K V . . . 13414 TGGTTCCCCATTGTTATTTTTCTT W F P I V I F L G S P L L F F M V P H C Y F S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 21161 15883 AGS-1 (21161 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 15883) SCR (e 1.000 d 0.992 a 1.000,e 1.000 d 0.999 a 0.975,e 1.000 d 0.991 a 0.974,e 1.000 d 0.787 a 0.998,e 1.000 d 0.990 a 0.995,e 1.000 d 0.970 a 0.968,e 1.000 d 0.950 a 0.999,e 1.000) Exon 1 21161 20928 ( 234 n); score: 1.000 Intron 1 20927 20839 ( 89 n); Pd: 0.992 Pa: 1.000 Exon 2 20838 20692 ( 147 n); score: 1.000 Intron 2 20691 19605 (1087 n); Pd: 0.999 Pa: 0.975 Exon 3 19604 19507 ( 98 n); score: 1.000 Intron 3 19506 18998 ( 509 n); Pd: 0.991 Pa: 0.974 Exon 4 18997 18925 ( 73 n); score: 1.000 Intron 4 18924 18847 ( 78 n); Pd: 0.787 Pa: 0.998 Exon 5 18846 18786 ( 61 n); score: 1.000 Intron 5 18785 18260 ( 526 n); Pd: 0.990 Pa: 0.995 Exon 6 18259 18174 ( 86 n); score: 1.000 Intron 6 18173 18069 ( 105 n); Pd: 0.970 Pa: 0.968 Exon 7 18068 17979 ( 90 n); score: 1.000 Intron 7 17978 16206 (1773 n); Pd: 0.950 Pa: 0.999 Exon 8 16205 15883 ( 323 n); score: 1.000 PGS (18222 18174,18068 17979,16205 15883) SGN-E226546- PGS (16201 15883) SGN-E226917- PGS (18193 18174,18068 17979,16205 15887) SGN-E226904- PGS (18010 17979,16205 15887) SGN-E226508- PGS (20941 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 15983) SGN-E320569- PGS (20935 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 16092) SGN-E340777+ PGS (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17996) SGN-E326217+ PGS (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 18058) SGN-E327899+ PGS (21126 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 18064) SGN-E254387+ PGS (21161 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174) SGN-E344757+ PGS (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18206) SGN-E326578+ PGS (21086 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18222) SGN-E320668+ PGS (21096 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18223) SGN-E312216+ PGS (21065 20928,20838 20692,19604 19507,18997 18925,18846 18786) SGN-E289295+ PGS (21130 20928,20838 20692,19604 19507,18997 18925,18846 18814) SGN-E298967+ PGS (21127 20928,20838 20692,19604 19507,18997 18929) SGN-E255732+ PGS (21077 20928,20838 20692,19604 19507,18997 18929) SGN-E268168+ PGS (21153 20928,20838 20692,19604 19507,18997 18941) SGN-E320589+ PGS (21111 20928,20838 20692,19604 19507,18997 18943) SGN-E292918+ PGS (21149 20928,20838 20692,19604 19547) SGN-E322717+ PGS (21074 20928,20838 20692) SGN-E204741+ 3-phase translation of AGS-1 (-strand): . . . . . . 21161 ATAGGAAGGAAAATTGTAGATAAGGGTGTGCGCATTTCTAACGGATAAAGCACCGCGAAA I G R K I V D K G V R I S N G - S T A K - E G K L - I R V C A F L T D K A P R N R K E N C R - G C A H F - R I K H R E . . . . . . 21101 CTAACTGAACTCAATAACCAGTCATTCAAAAGCTCTCAAAAACGGCCAACAATGGCCGCA L T E L N N Q S F K S S Q K R P T M A A - L N S I T S H S K A L K N G Q Q W P Q T N - T Q - P V I Q K L S K T A N N G R . . . . . . 21041 GCATTCAGCAGCAGCTTTACTAGTTCCGCCATTGGAGCTCAATTCTACAGGCCCAAATTT A F S S S F T S S A I G A Q F Y R P K F H S A A A L L V P P L E L N S T G P N L S I Q Q Q L Y - F R H W S S I L Q A Q I . . . . . . : 20981 GTAAAACCCAAGACTTTTGTAAACACAATTCGCTGTGCTGGTAGACTAGAATGG : GATCCA V K P K T F V N T I R C A G R L E W : D P - N P R L L - T Q F A V L V D - N G : I Q C K T Q D F C K H N S L C W - T R M : G S . . . . . . 20832 GATGGTTTATTGGGTCCGCCTCAAACGGGTCATATAGCCCGACTCGAGTTCCAGAGACGC D G L L G P P Q T G H I A R L E F Q R R M V Y W V R L K R V I - P D S S S R D A R W F I G S A S N G S Y S P T R V P E T . . . . . . 20772 CTTGAGAACGATGCTGCGGCCAGAGAAGAATTTGAACGGCAAGTTCGTGAAGAGAAAGAA L E N D A A A R E E F E R Q V R E E K E L R T M L R P E K N L N G K F V K R K N P - E R C C G Q R R I - T A S S - R E R . . . : . . . 20712 CGTCGCAGAGTTCTTCGTGAG : TCACGAGTGATTCCGGATACAGTGGAAGGGCTTGTGGAG R R R V L R E : S R V I P D T V E G L V E V A E F F V S : H E - F R I Q W K G L W S T S Q S S S - : V T S D S G Y S G R A C G . . . . . . : 19565 TTTTTTCTTGACACTGAAGCTCAAGAGATTGAATTTGAGATTGCAAGAATGAGACCACG : A F F L D T E A Q E I E F E I A R M R P R : F F L T L K L K R L N L R L Q E - D H : D V F S - H - S S R D - I - D C K N E T T : . . . . . . 18996 TTGAACAAAGAATTCTTTGACCATCTGCAAGTCGAACTTGGAAAGCTGCGTTTTTCTGTA L N K E F F D H L Q V E L G K L R F S V - T K N S L T I C K S N L E S C V F L - I E Q R I L - P S A S R T W K A A F F C . . : . . . . 18936 AACAAAACTCAG : GCTGTGGAAGACAGATTATTTGAACTGGAAGCACTGCAAAAGGCCCTG N K T Q : A V E D R L F E L E A L Q K A L T K L R : L W K T D Y L N W K H C K R P C K Q N S : G C G R Q I I - T G S T A K G P . . : . . . . 18798 CAAGAAGCAACAG : AAGCCTATGATAAATTACAAGCAGATCTTGTAGCAACAAAGAAGAAC Q E A T : E A Y D K L Q A D L V A T K K N K K Q Q : K P M I N Y K Q I L - Q Q R R T A R S N R : S L - - I T S R S C S N K E E . . . . : . . 18212 CTAACTGAGATTTTGACTTCAAAGGATGTCAAGGCTACT : CTTTTGGATTTGGTTGAGAGG L T E I L T S K D V K A T : L L D L V E R - L R F - L Q R M S R L L : F W I W L R G P N - D F D F K G C Q G Y : S F G F G - E . . . . . . 18047 AATGCGCTGAATAGACCCTTGTTGACGCTTCTTGATGAAAACATTGCAACTGCACATAGT N A L N R P L L T L L D E N I A T A H S M R - I D P C - R F L M K T L Q L H I V E C A E - T L V D A S - - K H C N C T - . : . . . . . 17987 GTTAACCAG : AAACAAGCAGCAGAATACATGGAAAAGCTGAGAGGACTTGTTCTGAAGTAC V N Q : K Q A A E Y M E K L R G L V L K Y L T R : N K Q Q N T W K S - E D L F - S T C - P : E T S S R I H G K A E R T C S E V . . . . . . 16154 CTAACAGTATAGATTCCATCTCAAGGCTATCAAATGCTTGTCTCATGTTTATACAGAGAA L T V - I P S Q G Y Q M L V S C L Y R E - Q Y R F H L K A I K C L S H V Y T E K P N S I D S I S R L S N A C L M F I Q R . . . . . . 16094 ATGGTGAGAATTTCTGGTTATTTATATTTTACTAATATTGTAGTATATTACAAAATTTTG M V R I S G Y L Y F T N I V V Y Y K I L W - E F L V I Y I L L I L - Y I T K F C N G E N F W L F I F Y - Y C S I L Q N F . . . . . . 16034 TAGGAATATGAACTTAGAATGGATCCCTTTAATAACAATAAGAAAGTATCCCATCATTTG - E Y E L R M D P F N N N K K V S H H L R N M N L E W I P L I T I R K Y P I I C V G I - T - N G S L - - Q - E S I P S F . . . . . . 15974 TGAAAAGAATGAGTACACCATGTAACTGAAAATCCATGTTCTTTCTTCCTTGTCTGTTGG - K E - V H H V T E N P C S F F L V C W E K N E Y T M - L K I H V L S S L S V G V K R M S T P C N - K S M F F L P C L L . . . . 15914 AAAGTGTGAAATCCTATTTTTACTGAAAGTGA K V - N P I F T E S K C E I L F L L K V E S V K S Y F Y - K - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-5_AGS-1_PPS_1 (21113 20928,20838 20692,19604 19507,18997 18925,18846 18786,18259 18174,18068 17979,16205 16143) (frame '1'; 801 bp, 267 residues) 1 STAKLTELNN QSFKSSQKRP TMAAAFSSSF TSSAIGAQFY RPKFVKPKTF VNTIRCAGRL 61 EWDPDGLLGP PQTGHIARLE FQRRLENDAA AREEFERQVR EEKERRRVLR ESRVIPDTVE 121 GLVEFFLDTE AQEIEFEIAR MRPRLNKEFF DHLQVELGKL RFSVNKTQAV EDRLFELEAL 181 QKALQEATEA YDKLQADLVA TKKNLTEILT SKDVKATLLD LVERNALNRP LLTLLDENIA 241 TAHSVNQKQA AEYMEKLRGL VLKYLTV- PGL 6 (+ strand): 23765 27791 AGS-1 (23765 23891) SCR (e 0.854) Exon 1 23765 23891 ( 127 n); score: 0.854 PGS (23765 23891) SGN-E243215- 3-phase translation of AGS-1 (+strand): . . . . . . 23765 TATGCAAGATATAAAAAATAGGGAAAAGGGTCTGATATACCTCTTAACTTTGTCATTTAG Y A R Y K K - G K G S D I P L N F V I - M Q D I K N R E K G L I Y L L T L S F R C K I - K I G K R V - Y T S - L C H L . . . . . . 23825 AGCTGATATATTCCTTGTTAATAAAGTGGCTCATATATACCCCTACGTGTAAACAAATGG S - Y I P C - - S G S Y I P L R V N K W A D I F L V N K V A H I Y P Y V - T N G E L I Y S L L I K W L I Y T P T C K Q M . 23885 CTCACAT L T S H A H Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 23891 ATGTGAGCCATTTGTTTACACGTAGGGGTATATATGAGCCACTTTATTAACAAGGAATAT M - A I C L H V G V Y M S H F I N K E Y C E P F V Y T - G Y I - A T L L T R N I V S H L F T R R G I Y E P L Y - Q G I . . . . . . 23831 ATCAGCTCTAAATGACAAAGTTAAGAGGTATATCAGACCCTTTTCCCTATTTTTTATATC I S S K - Q S - E V Y Q T L F P I F Y I S A L N D K V K R Y I R P F S L F F I S Y Q L - M T K L R G I S D P F P Y F L Y . 23771 TTGCATA L H C I L A Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (24011 24379,24458 24484) SCR (e 0.889 d 0.000 a 0.000,e 0.741) Exon 1 24011 24379 ( 369 n); score: 0.889 Intron 1 24380 24457 ( 78 n); Pd: 0.000 Pa: 0.000 Exon 2 24458 24484 ( 27 n); score: 0.741 PGS (24011 24379,24458 24484) SGN-E542827+ 3-phase translation of AGS-2 (+strand): . . . . . . 24011 TTGACTTTTTTTTATTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATT L T F F Y F N D - F I I I I L I I K F I - L F F I S M T N L - L L F - - S N L F D F F L F Q - L I Y N Y Y F D N Q I Y . . . . . . 24071 TATGTTTCACTAATATTATTGTAAAACTTATTGTAGATGACCAAAATTTTTCTTCGAATA Y V S L I L L - N L L - M T K I F L R I M F H - Y Y C K T Y C R - P K F F F E Y L C F T N I I V K L I V D D Q N F S S N . . . . . . 24131 CGAAATTAAATTACTATACACACAAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAG R N - I T I H T K K I V - F F I L - T K E I K L L Y T Q K K - F N F L F F K L R T K L N Y Y T H K K N S L I F Y S L N - . . . . . . 24191 GAATGAAAGAAAACAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTC E - K K T T K - E - E I Q I I I I K E V N E R K Q Q N K N K K F K - L - - K K S G M K E N N K I R I R N S N N Y N K R S . . . . . . 24251 AAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCA K K - F M Y E K N - N I P - T L I E E S K N N L C M K K I K I Y L E L - - K N H Q K I I Y V - K K L K Y T L N F D R R I . . . . . . 24311 TATATATCCCTAAATAATTTTTTAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTA Y I S L N N F L K K L E V I N I N L K L I Y P - I I F - K N - K - - I - I - N - I Y I P K - F F K K I R S N K Y K F K T . : . . . 24371 ATTTTTTAA : GATATATGAACCACTTTTATAACGAAG I F - : D I - T T F I T K F F K : I Y E P L L - R N F L : R Y M N H F Y N E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (24098 24501) SCR (e 0.901) Exon 1 24098 24501 ( 404 n); score: 0.901 PGS (24098 24482) SGN-E243215+ PGS (24226 24501) SGN-E578389- 3-phase translation of AGS-3 (+strand): . . . . . . 24098 TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACTATACACACAAAA L L - M T K I F L R I R N - I T I H T K Y C R - P K F F F E Y E I K L L Y T Q K I V D D Q N F S S N T K L N Y Y T H K . . . . . . 24158 AAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAACAACAAAATAAGAA K I V - F F I L - T K E - K K T T K - E K - F N F L F F K L R N E R K Q Q N K N K N S L I F Y S L N - G M K E N N K I R . . . . . . 24218 TAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAAT - E I Q I I I I K E V K K - F M Y E K N K K F K - L - - K K S K N N L C M K K I I R N S N N Y N K R S Q K I I Y V - K K . . . . . . 24278 TAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATAATTTTTTAAAA - N I P - T L I E E S Y I S L N N F L K K I Y L E L - - K N H I Y P - I I F - K L K Y T L N F D R R I I Y I P K - F F K . . . . . . 24338 AAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTGTTAAATGAAT K L E V I N I N L K L I F - L P C - M N N - K - - I - I - N - F F N F R V K - M K I R S N K Y K F K T N F L T S V L N E . . . . . . 24398 GGTATATGTGAGCCATTTTGTAACGGCAGAATATATGTGAGCTGTTTGTATAACGATAAG G I C E P F C N G R I Y V S C L Y N D K V Y V S H F V T A E Y M - A V C I T I R W Y M - A I L - R Q N I C E L F V - R - . . . . . 24458 GATATATGAACCACTTTTATAACGAAGGTTATATCAGCTCCAAA D I - T T F I T K V I S A P I Y E P L L - R R L Y Q L Q G Y M N H F Y N E G Y I S S K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 24501 TTTGGAGCTGATATAACCTTCGTTATAAAAGTGGTTCATATATCCTTATCGTTATACAAA F G A D I T F V I K V V H I S L S L Y K L E L I - P S L - K W F I Y P Y R Y T N W S - Y N L R Y K S G S Y I L I V I Q . . . . . . 24441 CAGCTCACATATATTCTGCCGTTACAAAATGGCTCACATATACCATTCATTTAACACGGA Q L T Y I L P L Q N G S H I P F I - H G S S H I F C R Y K M A H I Y H S F N T E T A H I Y S A V T K W L T Y T I H L T R . . . . . . 24381 AGTTAAAAAATTAGTTTTAAATTTATATTTATTACTTCTAATTTTTTTAAAAAATTATTT S - K I S F K F I F I T S N F F K K L F V K K L V L N L Y L L L L I F L K N Y L K L K N - F - I Y I Y Y F - F F - K I I . . . . . . 24321 AGGGATATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATA R D I Y D S S I K V Q G I F - F F S Y I G I Y M I L L S K F K V Y F N F F H T - - G Y I - F F Y Q S S R Y I L I F F I H . . . . . . 24261 AATTATTTTTTGACTTCTTTTATTATAATTATTTGAATTTCTTATTCTTATTTTGTTGTT N Y F L T S F I I I I - I S Y S Y F V V I I F - L L L L - L F E F L I L I L L F K L F F D F F Y Y N Y L N F L F L F C C . . . . . . 24201 TTCTTTCATTCCTTAGTTTAAAGAATAAAAAATTAAACTATTTTTTTTGTGTGTATAGTA F F H S L V - R I K N - T I F F V C I V S F I P - F K E - K I K L F F L C V - - F L S F L S L K N K K L N Y F F C V Y S . . . . . 24141 ATTTAATTTCGTATTCGAAGAAAAATTTTGGTCATCTACAATAA I - F R I R R K I L V I Y N F N F V F E E K F W S S T I N L I S Y S K K N F G H L Q - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-6_AGS-3_PPS_1 (24473 24261) (frame '2'; 210 bp, 70 residues) 1 KWFIYPYRYT NSSHIFCRYK MAHIYHSFNT EVKKLVLNLY LLLLIFLKNY LGIYMILLSK 61 FKVYFNFFHT - >C08HBa0060C12.1-_PGL-6_AGS-3_PPS_2 (24307 24098) (frame '0'; 207 bp, 69 residues) 1 FFYQSSRYIL IFFIHKLFFD FFYYNYLNFL FLFCCFLSFL SLKNKKLNYF FCVYSNLISY 61 SKKNFGHLQ- AGS-4 (24729 25049,25363 25692) SCR (e 1.000 d 0.968 a 1.000,e 0.997) Exon 1 24729 25049 ( 321 n); score: 1.000 Intron 1 25050 25362 ( 313 n); Pd: 0.968 Pa: 1.000 Exon 2 25363 25692 ( 330 n); score: 0.997 PGS (24729 25049,25363 25692) SGN-E347734+ 3-phase translation of AGS-4 (+strand): . . . . . . 24729 TACAGAGAAAAATGCTCTCCTCCAAGCTCTCCTGGTTGATCACGGCCGCGATCACGGCGG Y R E K C S P P S S P G - S R P R S R R T E K N A L L Q A L L V D H G R D H G G Q R K M L S S K L S W L I T A A I T A . . . . . . 24789 CGCTACTGTCGCCAACCACCATAGAGGCACAAACGCCGTCGTGTGCTTCTCAACTTGTCC R Y C R Q P P - R H K R R R V L L N L S A T V A N H H R G T N A V V C F S T C P A L L S P T T I E A Q T P S C A S Q L V . . . . . . 24849 CCTGTGCAGCTTTCCTCAACTCAACCAAACCACCGGCTTCTTGCTGTGACCCACTAAGAG P V Q L S S T Q P N H R L L A V T H - E L C S F P Q L N Q T T G F L L - P T K R P C A A F L N S T K P P A S C C D P L R . . . . . . 24909 AAGCCGTGACCAAAGATCTTCAATGTCTCTGCAAACTTTACGAAAATCCCGCTTTGTTGA K P - P K I F N V S A N F T K I P L C - S R D Q R S S M S L Q T L R K S R F V D E A V T K D L Q C L C K L Y E N P A L L . . . . . . 24969 TTTCTCTCGGTATTAACGTTACTCAAGCTATTGAACTTCCTAAGTACTGTAACATCCCTG F L S V L T L L K L L N F L S T V T S L F S R Y - R Y S S Y - T S - V L - H P W I S L G I N V T Q A I E L P K Y C N I P . . . : . . . 25029 GCGATGTTTCCGCTTGTAAAG : CGGCTGCTCCTAGTTCAAGTTCTCCTTCTGGGAAAACGC A M F P L V K : R L L L V Q V L L L G K R R C F R L - S : G C S - F K F S F W E N A G D V S A C K : A A A P S S S S P S G K T . . . . . . 25402 CACCAGGTAACTGAGATTAAATTGCTTTTTGTTTCAACTTTGTTAACACTGAGTTAAAAG H Q V T E I K L L F V S T L L T L S - K T R - L R L N C F L F Q L C - H - V K S P P G N - D - I A F C F N F V N T E L K . . . . . . 25462 TAGTCAATTGATGAACAATTTCGGAGTATGCATCAATTTGATTTAATCTTTTTTGTTAAT - S I D E Q F R S M H Q F D L I F F V N S Q L M N N F G V C I N L I - S F L L I V V N - - T I S E Y A S I - F N L F C - . . . . . . 25522 TATTGATCCTTGCTCCTTTAAGTTTTACTGCATCGTGATCCATAGGTGTTTCTAGTTCCA Y - S L L L - V L L H R D P - V F L V P I D P C S F K F Y C I V I H R C F - F H L L I L A P L S F T A S - S I G V S S S . . . . . . 25582 TTTATTTTTGCTTGGCCTTATTGAACTTTGCACATATGGTAGTGTTTGTATTGCTAATTG F I F A W P Y - T L H I W - C L Y C - L L F L L G L I E L C T Y G S V C I A N C I Y F C L A L L N F A H M V V F V L L I . . . . . . 25642 TACTTATTAATTATTCTTTGAAAAAAAAGTTTGACTACTGGTGCTTTATAT Y L L I I L - K K S L T T G A L Y T Y - L F F E K K V - L L V L Y V L I N Y S L K K K F D Y W C F I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-6_AGS-4_PPS_1 (24731 25049,25363 25415) (frame '0'; 369 bp, 123 residues) 1 QRKMLSSKLS WLITAAITAA LLSPTTIEAQ TPSCASQLVP CAAFLNSTKP PASCCDPLRE 61 AVTKDLQCLC KLYENPALLI SLGINVTQAI ELPKYCNIPG DVSACKAAAP SSSSPSGKTP 121 PGN- AGS-5 (24733 25049,25363 25407,27496 27791) SCR (e 1.000 d 0.968 a 1.000,e 1.000 d 0.988 a 0.995,e 0.996) Exon 1 24733 25049 ( 317 n); score: 1.000 Intron 1 25050 25362 ( 313 n); Pd: 0.968 Pa: 1.000 Exon 2 25363 25407 ( 45 n); score: 1.000 Intron 2 25408 27495 (2088 n); Pd: 0.988 Pa: 0.995 Exon 3 27496 27791 ( 296 n); score: 0.996 PGS (24733 25049,25363 25407,27496 27769) SGN-E376015- PGS (24734 25049,25363 25407,27496 27769) SGN-E376016+ PGS (24734 25049,25363 25407,27496 27578) SGN-E378444+ PGS (24777 25049,25363 25407,27496 27621) SGN-E318895+ PGS (25374 25407,27496 27791) SGN-E323385- 3-phase translation of AGS-5 (+strand): . . . . . . 24733 GAGAAAAATGCTCTCCTCCAAGCTCTCCTGGTTGATCACGGCCGCGATCACGGCGGCGCT E K N A L L Q A L L V D H G R D H G G A R K M L S S K L S W L I T A A I T A A L E K C S P P S S P G - S R P R S R R R . . . . . . 24793 ACTGTCGCCAACCACCATAGAGGCACAAACGCCGTCGTGTGCTTCTCAACTTGTCCCCTG T V A N H H R G T N A V V C F S T C P L L S P T T I E A Q T P S C A S Q L V P C Y C R Q P P - R H K R R R V L L N L S P . . . . . . 24853 TGCAGCTTTCCTCAACTCAACCAAACCACCGGCTTCTTGCTGTGACCCACTAAGAGAAGC C S F P Q L N Q T T G F L L - P T K R S A A F L N S T K P P A S C C D P L R E A V Q L S S T Q P N H R L L A V T H - E K . . . . . . 24913 CGTGACCAAAGATCTTCAATGTCTCTGCAAACTTTACGAAAATCCCGCTTTGTTGATTTC R D Q R S S M S L Q T L R K S R F V D F V T K D L Q C L C K L Y E N P A L L I S P - P K I F N V S A N F T K I P L C - F . . . . . . 24973 TCTCGGTATTAACGTTACTCAAGCTATTGAACTTCCTAAGTACTGTAACATCCCTGGCGA S R Y - R Y S S Y - T S - V L - H P W R L G I N V T Q A I E L P K Y C N I P G D L S V L T L L K L L N F L S T V T S L A . . : . . . . 25033 TGTTTCCGCTTGTAAAG : CGGCTGCTCCTAGTTCAAGTTCTCCTTCTGGGAAAACGCCACC C F R L - S : G C S - F K F S F W E N A T V S A C K : A A A P S S S S P S G K T P P M F P L V K : R L L L V Q V L L L G K R H . : . . . . . 25406 AG : TCACCACCCCAGCTTCAAAAGATAAAAACGGAGTGAGCACGGTTGCATGGACTGGAAT S : H H P S F K R - K R S E H G C M D W N : V T T P A S K D K N G V S T V A W T G M Q : S P P Q L Q K I K T E - A R L H G L E . . . . . . 27554 GTCAAGCTTACTCATGCTCTTTGCTTCGTTCGTGCTTGCTTAGTTCACAGAGTGTGTCCT V K L T H A L C F V R A C L V H R V C P S S L L M L F A S F V L A - F T E C V L C Q A Y S C S L L R S C L L S S Q S V S . . . . . . 27614 TCAAGTACTGGGTAAATGTTGGTGAATTTCTTTGTTTCAGTATTTATTTAGGGAATTGAA S S T G - M L V N F F V S V F I - G I E Q V L G K C W - I S L F Q Y L F R E L K F K Y W V N V G E F L C F S I Y L G N - . . . . . . 27674 AGATTGTACTCCAGACTTGATCGCTTTTATTATGTGAAGTTTCCAATTGAGATGAACTAA R L Y S R L D R F Y Y V K F P I E M N - D C T P D L I A F I M - S F Q L R - T K K I V L Q T - S L L L C E V S N - D E L . . . . . . 27734 ATGAAGCTAAATTGATGTATGAATCGTATTGCATAAGTTGTGTTTGCATGTTCTTGGT M K L N - C M N R I A - V V F A C S W - S - I D V - I V L H K L C L H V L G N E A K L M Y E S Y C I S C V C M F L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-6_AGS-5_PPS_1 (24734 25049,25363 25407,27496 27596) (frame '2'; 459 bp, 153 residues) 1 RKMLSSKLSW LITAAITAAL LSPTTIEAQT PSCASQLVPC AAFLNSTKPP ASCCDPLREA 61 VTKDLQCLCK LYENPALLIS LGINVTQAIE LPKYCNIPGD VSACKAAAPS SSSPSGKTPP 121 VTTPASKDKN GVSTVAWTGM SSLLMLFASF VLA- PGL 7 (+ strand): 28631 33949 AGS-1 (28631 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32103,32187 32480,32687 32744,33618 33949) SCR (e 1.000 d 0.998 a 0.998,e 1.000 d 1.000 a 0.988,e 1.000 d 1.000 a 0.999,e 1.000 d 0.768 a 0.997,e 1.000 d 1.000 a 1.000,e 1.000 d 0.950 a 0.981,e 1.000 d 0.812 a 0.996,e 1.000 d 0.999 a 0.998,e 1.000 d 1.000 a 0.998,e 1.000 d 0.947 a 0.978,e 1.000) Exon 1 28631 28889 ( 259 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 Pa: 0.998 Exon 2 29064 29115 ( 52 n); score: 1.000 Intron 2 29116 30423 (1308 n); Pd: 1.000 Pa: 0.988 Exon 3 30424 30588 ( 165 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 Pa: 0.999 Exon 4 30678 30765 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 Pa: 0.997 Exon 5 30863 30943 ( 81 n); score: 1.000 Intron 5 30944 31053 ( 110 n); Pd: 1.000 Pa: 1.000 Exon 6 31054 31118 ( 65 n); score: 1.000 Intron 6 31119 31680 ( 562 n); Pd: 0.950 Pa: 0.981 Exon 7 31681 31821 ( 141 n); score: 1.000 Intron 7 31822 31986 ( 165 n); Pd: 0.812 Pa: 0.996 Exon 8 31987 32103 ( 117 n); score: 1.000 Intron 8 32104 32186 ( 83 n); Pd: 0.999 Pa: 0.998 Exon 9 32187 32480 ( 294 n); score: 1.000 Intron 9 32481 32686 ( 206 n); Pd: 1.000 Pa: 0.998 Exon 10 32687 32744 ( 58 n); score: 1.000 Intron 10 32745 33617 ( 873 n); Pd: 0.947 Pa: 0.978 Exon 11 33618 33949 ( 332 n); score: 1.000 PGS (28631 28889,29064 29115,30424 30588,30678 30765,30863 30938) SGN-E305050+ PGS (28649 28889,29064 29115,30424 30588,30678 30765,30863 30892) SGN-E333897+ PGS (28654 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31107) SGN-E345662+ PGS (28654 28889,29064 29115,30424 30588,30678 30684) SGN-E339491+ PGS (28656 28889,29064 29115,30424 30586) SGN-E337901+ PGS (28659 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31737) SGN-E333805+ PGS (28661 28889,29064 29115) SGN-E279064+ PGS (28679 28889,29064 29115,30424 30588,30678 30765,30863 30938) SGN-E304085+ PGS (28735 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31797) SGN-E331934+ PGS (28787 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32051) SGN-E543951+ PGS (28788 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31067) SGN-E305262+ PGS (30438 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32001) SGN-E326839+ PGS (30524 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32076) SGN-E272704+ PGS (30559 30588,30678 30765,30863 30943,31054 31118,31681 31751) SGN-E217146+ PGS (30560 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 31994) SGN-E217096+ PGS (30743 30765,30863 30943,31054 31118,31681 31821,31987 32103,32187 32318) SGN-E304691+ PGS (31061 31118,31681 31821,31987 32103,32187 32366) SGN-E251925+ PGS (31772 31821,31987 32103,32187 32480,32687 32744,33618 33731) SGN-E323014+ PGS (32026 32103,32187 32480,32687 32744,33618 33934) SGN-E543950- PGS (32237 32480,32687 32744,33618 33948) SGN-E284029+ PGS (32265 32480,32687 32744,33618 33775) SGN-E292663+ PGS (32392 32480,32687 32744,33618 33949) SGN-E217005- PGS (32408 32480,32687 32744,33618 33949) SGN-E232490- PGS (32426 32480,32687 32744,33618 33934) SGN-E330621- PGS (32711 32744,33618 33941) SGN-E216422- PGS (32713 32744,33618 33949) SGN-E216631- PGS (33633 33949) SGN-E232414- PGS (33661 33944) SGN-E350442+ 3-phase translation of AGS-1 (+strand): . . . . . . 28631 AGTAATAGAAGCTACTAGAAGAACCTAGTCAGCTCCAGTCCCCTTCCATTTTCCTCGCCT S N R S Y - K N L V S S S P L P F S S P V I E A T R R T - S A P V P F H F P R L - - K L L E E P S Q L Q S P S I F L A . . . . . . 28691 CACTACCAAAAGCTAGGGTTTACAGTTTCTACAATTTCAAAATTTTTTGAATCTGTAGTA H Y Q K L G F T V S T I S K F F E S V V T T K S - G L Q F L Q F Q N F L N L - - S L P K A R V Y S F Y N F K I F - I C S . . . . . . 28751 ATCGTATTTGAAGGTAATCGGAAAAAGCTATGGACCCGATGAAGTTGAATCAACTGAAGC I V F E G N R K K L W T R - S - I N - S S Y L K V I G K S Y G P D E V E S T E A N R I - R - S E K A M D P M K L N Q L K . . . . . . 28811 AATTCGTTGAACAGTGCAAATCCAATCCTTCCATTCTCTCCGATCCTTCTCTTTCATTTT N S L N S A N P I L P F S P I L L F H F I R - T V Q I Q S F H S L R S F S F I F Q F V E Q C K S N P S I L S D P S L S F . . : . . . . 28871 TCCGTGACTACATTGAGAA : TCTCGGTGCTAAACTTCCTCCGGCTGCTTACGACACCGGCG S V T T L R : I S V L N F L R L L T T P A P - L H - E : S R C - T S S G C L R H R R F R D Y I E N : L G A K L P P A A Y D T G . . : . . . . 29105 ATTACAAAGAG : AAGTCCCATGCGGTGGATGCGAGTGATGATGAGATGGATGATGATGAGA I T K R : S P M R W M R V M M R W M M M R L Q R : E V P C G G C E - - - D G - - - E D Y K E : K S H A V D A S D D E M D D D E . . . . . . 30473 ATGATGCTAATATCAAAGAGACAGTTGAAGAAGAGGAGGAGCCTGAGATAATTGAATCTG M M L I S K R Q L K K R R S L R - L N L - C - Y Q R D S - R R G G A - D N - I - N D A N I K E T V E E E E E P E I I E S . . . . . . : 30533 ATATTGAGCTTGATGAGAGTGACACTGTGGAACCTGACAATGATGAGCCACAGAAG : ATGG I L S L M R V T L W N L T M M S H R R : W Y - A - - E - H C G T - Q - - A T E : D G D I E L D E S D T V E P D N D E P Q K : M . . . . . . 30682 GAGACCCTTCTGTGGAGGTGACTGAAGAAAGCCGTGATGCTTCTCAGGAGTCCAAAGCTG E T L L W R - L K K A V M L L R S P K L R P F C G G D - R K P - C F S G V Q S - G D P S V E V T E E S R D A S Q E S K A . . . : . . . 30742 AGGCCATGGAAGCAATTTCTGAAG : GTAAGTTAGAAGATGCAATTGAGCATCTTACGAAGG R P W K Q F L K : V S - K M Q L S I L R R G H G S N F - R : - V R R C N - A S Y E G E A M E A I S E : G K L E D A I E H L T K . . . . . : . 30899 CAGTTCTCCTCAATCCTAAATCAGCAATTATGTATGCTACTAGAG : CTAGTGTTTATATCA Q F S S I L N Q Q L C M L L E : L V F I S S S P Q S - I S N Y V C Y - S : - C L Y Q A V L L N P K S A I M Y A T R : A S V Y I . . . . . : . 31069 AGATGAAGAAGCCAAACGCTGCCATACGAGATGCAACTGCAGCATTGGAG : TTGAATCCAG R - R S Q T L P Y E M Q L Q H W S : - I Q D E E A K R C H T R C N C S I G : V E S R K M K K P N A A I R D A T A A L E : L N P . . . . . . 31691 ATTCTGCTAAAGGTTACAAATCTCGTGGCATTGCCAGAGCCATGCTGGGACAGTGGGAGG I L L K V T N L V A L P E P C W D S G R F C - R L Q I S W H C Q S H A G T V G G D S A K G Y K S R G I A R A M L G Q W E . . . . . . 31751 CAGCTGCTAAGGATCTTCATGTGGCTTCGAAGCTGGACTATGATGAGGAAATAAGTGCTG Q L L R I F M W L R S W T M M R K - V L S C - G S S C G F E A G L - - G N K C C A A A K D L H V A S K L D Y D E E I S A . . : . . . . 31811 TGCTTAAGAAG : GTTGAGCCCAATGCACATAGAATTGAAGAACACCGCAGGAAATATGATA C L R R : L S P M H I E L K N T A G N M I A - E : G - A Q C T - N - R T P Q E I - - V L K K : V E P N A H R I E E H R R K Y D . . . . . . 32036 GGTTGCGCAAAGAACGAGAAGATAGAAAGATTGAGCGTGAGAGACAACGAAGAAAGGCTG G C A K N E K I E R L S V R D N E E R L V A Q R T R R - K D - A - E T T K K G - R L R K E R E D R K I E R E R Q R R K A . : . . . . . 32096 AAGCTCAG : GCTGCTTATGAAAAGGCCAAGAAGCAAGAAGAATCATCAAGTAGGAGAGCTG K L R : L L M K R P R S K K N H Q V G E L S S : G C L - K G Q E A R R I I K - E S W E A Q : A A Y E K A K K Q E E S S S R R A . . . . . . 32239 GTGGCATGCCCGGAGGCTTTCCTGGTGGCATGCCCGGAGGCTTTCCTGGTGGCATGCCCG V A C P E A F L V A C P E A F L V A C P W H A R R L S W W H A R R L S W W H A R G G M P G G F P G G M P G G F P G G M P . . . . . . 32299 GATTTCCTGGTGGCATGCCCGGAGGTTTTCCTGGTGGCATGCCTGGAGGCTTTCCAGGTG D F L V A C P E V F L V A C L E A F Q V I S W W H A R R F S W W H A W R L S R W G F P G G M P G G F P G G M P G G F P G . . . . . . 32359 GCATGCCCGGAGGCTTTCCAGGGGGTATGCCTGGGTCTGCACCTGGAGGAATGCCCGGAG A C P E A F Q G V C L G L H L E E C P E H A R R L S R G Y A W V C T W R N A R R G M P G G F P G G M P G S A P G G M P G . . . . . . 32419 GCATGCCTGGGGCTGCACCTGGAGGAATGCCCGGTAACATGGACTACAGCAAAATACTGA A C L G L H L E E C P V T W T T A K Y - H A W G C T W R N A R - H G L Q Q N T E G M P G A A P G G M P G N M D Y S K I L . : . . . . . : 32479 AT : GACCCTGAATTAATGGCGGCATTCAAGGATCCAGATGTCATGGCTGCACTGCAAGATG : M : T L N - W R H S R I Q M S W L H C K M : : - P - I N G G I Q G S R C H G C T A R C : N : D P E L M A A F K D P D V M A A L Q D : . . . . . . 33618 TGATGAAGAACCCAGCTAATTTGGCCAAGCATCAAGGAAATCCTAAGATTGCTCCTATTA - - R T Q L I W P S I K E I L R L L L L D E E P S - F G Q A S R K S - D C S Y Y V M K N P A N L A K H Q G N P K I A P I . . . . . . 33678 TTGCAAAAATGATGGGCAAGTTTGCTGGAAATAATTGAGAGCTTTTGGGATTTTGTCCGT L Q K - W A S L L E I I E S F W D F V R C K N D G Q V C W K - L R A F G I L S V I A K M M G K F A G N N - E L L G F C P . . . . . . 33738 AGGAATTTCTAGAGTTTGATAGAGAACATGTTGTTTACCGTAAGCTTGTTTTTATCGAGT R N F - S L I E N M L F T V S L F L S S G I S R V - - R T C C L P - A C F Y R V - E F L E F D R E H V V Y R K L V F I E . . . . . . 33798 ATAAAGTCATTCTCCAAGATTGTGTCTAATCCAAGTTTAGTTTCAAACTACAGCTGTCTT I K S F S K I V S N P S L V S N Y S C L - S H S P R L C L I Q V - F Q T T A V F Y K V I L Q D C V - S K F S F K L Q L S . . . . . . 33858 CTTTTCTTATAGATTTGTTATTGTTATGTGTATCAACTATTTTTCCTTCTGGTGACTGAT L F L - I C Y C Y V Y Q L F F L L V T D F S Y R F V I V M C I N Y F S F W - L M S F L I D L L L L C V S T I F P S G D - . . . . 33918 GTTTTGGTATGCAAAAACTGGTTTCTATCTGC V L V C K N W F L S F W Y A K T G F Y L C F G M Q K L V S I C Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-7_AGS-1_PPS_1 (28768 28889,29064 29115,30424 30588,30678 30765,30863 30943,31054 31118,31681 31821,31987 32103,32187 32480,32687 32744,33618 33715) (frame '0'; 1278 bp, 426 residues) 1 SEKAMDPMKL NQLKQFVEQC KSNPSILSDP SLSFFRDYIE NLGAKLPPAA YDTGDYKEKS 61 HAVDASDDEM DDDENDANIK ETVEEEEEPE IIESDIELDE SDTVEPDNDE PQKMGDPSVE 121 VTEESRDASQ ESKAEAMEAI SEGKLEDAIE HLTKAVLLNP KSAIMYATRA SVYIKMKKPN 181 AAIRDATAAL ELNPDSAKGY KSRGIARAML GQWEAAAKDL HVASKLDYDE EISAVLKKVE 241 PNAHRIEEHR RKYDRLRKER EDRKIERERQ RRKAEAQAAY EKAKKQEESS SRRAGGMPGG 301 FPGGMPGGFP GGMPGFPGGM PGGFPGGMPG GFPGGMPGGF PGGMPGSAPG GMPGGMPGAA 361 PGGMPGNMDY SKILNDPELM AAFKDPDVMA ALQDVMKNPA NLAKHQGNPK IAPIIAKMMG 421 KFAGNN- AGS-2 (28737 28889,29064 29115,30427 30588,30678 30765,30863 30892) SCR (e 1.000 d 0.998 a 0.998,e 1.000 d 1.000 a 0.000,e 1.000 d 1.000 a 0.999,e 1.000 d 0.768 a 0.997,e 1.000) Exon 1 28737 28889 ( 153 n); score: 1.000 Intron 1 28890 29063 ( 174 n); Pd: 0.998 Pa: 0.998 Exon 2 29064 29115 ( 52 n); score: 1.000 Intron 2 29116 30426 (1311 n); Pd: 1.000 Pa: 0.000 Exon 3 30427 30588 ( 162 n); score: 1.000 Intron 3 30589 30677 ( 89 n); Pd: 1.000 Pa: 0.999 Exon 4 30678 30765 ( 88 n); score: 1.000 Intron 4 30766 30862 ( 97 n); Pd: 0.768 Pa: 0.997 Exon 5 30863 30892 ( 30 n); score: 1.000 PGS (28737 28889,29064 29115,30427 30588,30678 30765,30863 30892) SGN-E266123+ 3-phase translation of AGS-2 (+strand): . . . . . . 28737 TTGAATCTGTAGTAATCGTATTTGAAGGTAATCGGAAAAAGCTATGGACCCGATGAAGTT L N L - - S Y L K V I G K S Y G P D E V - I C S N R I - R - S E K A M D P M K L E S V V I V F E G N R K K L W T R - S . . . . . . 28797 GAATCAACTGAAGCAATTCGTTGAACAGTGCAAATCCAATCCTTCCATTCTCTCCGATCC E S T E A I R - T V Q I Q S F H S L R S N Q L K Q F V E Q C K S N P S I L S D P - I N - S N S L N S A N P I L P F S P I . . . . : . . 28857 TTCTCTTTCATTTTTCCGTGACTACATTGAGAA : TCTCGGTGCTAAACTTCCTCCGGCTGC F S F I F P - L H - E : S R C - T S S G C S L S F F R D Y I E N : L G A K L P P A A L L F H F S V T T L R : I S V L N F L R L . . . : . . . 29091 TTACGACACCGGCGATTACAAAGAG : TCCCATGCGGTGGATGCGAGTGATGATGAGATGGA L R H R R L Q R : V P C G G C E - - - D G Y D T G D Y K E : S H A V D A S D D E M D L T T P A I T K S : P M R W M R V M M R W . . . . . . 30462 TGATGATGAGAATGATGCTAATATCAAAGAGACAGTTGAAGAAGAGGAGGAGCCTGAGAT - - - E - C - Y Q R D S - R R G G A - D D D E N D A N I K E T V E E E E E P E I M M M R M M L I S K R Q L K K R R S L R . . . . . . 30522 AATTGAATCTGATATTGAGCTTGATGAGAGTGACACTGTGGAACCTGACAATGATGAGCC N - I - Y - A - - E - H C G T - Q - - A I E S D I E L D E S D T V E P D N D E P - L N L I L S L M R V T L W N L T M M S . : . . . . . 30582 ACAGAAG : ATGGGAGACCCTTCTGTGGAGGTGACTGAAGAAAGCCGTGATGCTTCTCAGGA T E : D G R P F C G G D - R K P - C F S G Q K : M G D P S V E V T E E S R D A S Q E H R R : W E T L L W R - L K K A V M L L R . . . . : . . 30731 GTCCAAAGCTGAGGCCATGGAAGCAATTTCTGAAG : GTAAGTTAGAAGATGCAATTGAGCA V Q S - G H G S N F - R : - V R R C N - A S K A E A M E A I S E : G K L E D A I E H S P K L R P W K Q F L K : V S - K M Q L S . 30888 TCTTA S L I L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-7_AGS-2_PPS_1 (28768 28889,29064 29115,30427 30588,30678 30765,30863 30891) (frame '2'; 453 bp, 151 residues) 1 SEKAMDPMKL NQLKQFVEQC KSNPSILSDP SLSFFRDYIE NLGAKLPPAA YDTGDYKESH 61 AVDASDDEMD DDENDANIKE TVEEEEEPEI IESDIELDES DTVEPDNDEP QKMGDPSVEV 121 TEESRDASQE SKAEAMEAIS EGKLEDAIEH L PGL 8 (- strand): 47590 46560 AGS-1 (47590 47019,46851 46560) SCR (e 0.941 d 0.000 a 0.000,e 0.892) Exon 1 47590 47019 ( 572 n); score: 0.941 Intron 1 47018 46852 ( 167 n); Pd: 0.000 Pa: 0.000 Exon 2 46851 46560 ( 292 n); score: 0.892 PGS (47279 47019,46851 46560) SGN-E262701+ PGS (47280 47019,46851 46565) SGN-E551179+ PGS (47590 47099) SGN-E538071+ PGS (47590 47264) SGN-E268499+ 3-phase translation of AGS-1 (-strand): . . . . . . 47590 TGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAAC C C Q S V L R K S E I T G C N K S F R N V A N L C - E N Q K L L V V I N H S E T L P I C V K K I R N Y W L - - I I Q K . . . . . . 47530 ACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAA T K - L R F L E P V N K M N R N L F V K R S N - D F - N Q - I R - T E I Y L - K H E V T E I F R T S K - D E Q K F I C K . . . . . . 47470 AAATAATTTAATCTGTAAAACTTATCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAG K - F N L - N L S E C - I L F Y F S F - N N L I C K T Y Q N V E Y S F I S L F R K I I - S V K L I R M L N T L L F L F L . . . . . . 47410 GAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGT E E N Q V H - I H S V P L R K L F P S S K K I K S T E F T V S P - G N Y S P L V G R K S S P L N S Q C P L K E I I P L - . . . . . . 47350 ATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTA I R G L I W N I T S Q G K M I L I S R V S E V - F G I - P P R V K - S - S V E Y Y P R F D L E Y N L P G - N D L N Q - S . . . . . . 47290 TAGATACCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAGAA - I P K T L L S A N Q F H S R K V H E E R Y Q K L Y C Q R I N S T A G K Y T K K I D T K N S T V S E S I P Q Q E S T R R . . . . . . 47230 ATATATGATTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGAAAATATTCTGAATACT I Y D F - E E G R S E N S L E N I L N T Y M I F K K K E D Q K I R - K I F - I L N I - F L R R R K I R K F V R K Y S E Y . . . . . . 47170 GAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGA E W Y L - A R I I Y S E R L L P F Q N - N G I Y R Q E - Y I L K G C Y P F R I D - M V F I G K N N I F - K V A T L S E L . . . . . . 47110 CACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGAATTGACTGTTCCTGAAAGTTGC H D H - - K V A N F Q M E L T V P E S C T T I N E R L Q T F K W N - L F L K V A T R P L M K G C K L S N G I D C S - K L . . . . : . . 47050 AACCTTTCAGAACAGTCATGGCGGGAAATTTT : AAAATTATCTCTCGATCGATCATTTGCC N L S E Q S W R E I L : K L S L D R S F A T F Q N S H G G K F : - N Y L S I D H L P Q P F R T V M A G N F : K I I S R S I I C . . . . . . 46823 AAAGCCAAAGTCGAAGCCGAAGTCGAAGCAAGCGACGACGGCGCGAGGGGTCCCTCTTTT K A K V E A E V E A S D D G A R G P S F K P K S K P K S K Q A T T A R G V P L F Q S Q S R S R S R S K R R R R E G S L F . . . . . . 46763 CAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTACTATTTTCATTTCC Q P F - Q L I G V F I Y L N S T I F I S N P F N N - - E C L F I - T L L F S F P S T L L T I N R S V Y L F K L Y Y F H F . . . . . . 46703 ATTACCGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCC I T D E G L L P F S I K H - R T F Q V P L P M R D Y C L F Q - S I R G L F K F P H Y R - G T I A F F N K A L E D F S S S . . . . . . 46643 AACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCT N L S S S K L F K F L S F P L F P I N S T F Q V L N F S N S S P S L Y F P S I L Q P F K F - T F Q I P L L P S I S H Q F . . . 46583 TGCTACATACCCAACATTACCCAA C Y I P N I T Q A T Y P T L P L L H T Q H Y P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-8_AGS-1_PPS_1 (47057 47019,46851 46693) (frame '0'; 195 bp, 65 residues) 1 KLQPFRTVMA GNFKIISRSI ICQSQSRSRS RSKRRRREGS LFSTLLTINR SVYLFKLYYF 61 HFHYR- AGS-2 (47590 46565) SCR (e 0.942) Exon 1 47590 46565 (1026 n); score: 0.942 PGS (46993 46565) SGN-E244899+ PGS (47590 46835) SGN-E538064+ 3-phase translation of AGS-2 (-strand): . . . . . . 47590 TGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAAC C C Q S V L R K S E I T G C N K S F R N V A N L C - E N Q K L L V V I N H S E T L P I C V K K I R N Y W L - - I I Q K . . . . . . 47530 ACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAA T K - L R F L E P V N K M N R N L F V K R S N - D F - N Q - I R - T E I Y L - K H E V T E I F R T S K - D E Q K F I C K . . . . . . 47470 AAATAATTTAATCTGTAAAACTTATCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAG K - F N L - N L S E C - I L F Y F S F - N N L I C K T Y Q N V E Y S F I S L F R K I I - S V K L I R M L N T L L F L F L . . . . . . 47410 GAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGT E E N Q V H - I H S V P L R K L F P S S K K I K S T E F T V S P - G N Y S P L V G R K S S P L N S Q C P L K E I I P L - . . . . . . 47350 ATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTA I R G L I W N I T S Q G K M I L I S R V S E V - F G I - P P R V K - S - S V E Y Y P R F D L E Y N L P G - N D L N Q - S . . . . . . 47290 TAGATACCAAAAACTCTACTGTCAGCGAATCAATTCCACAGCAGGAAAGTACACGAAGAA - I P K T L L S A N Q F H S R K V H E E R Y Q K L Y C Q R I N S T A G K Y T K K I D T K N S T V S E S I P Q Q E S T R R . . . . . . 47230 ATATATGATTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGAAAATATTCTGAATACT I Y D F - E E G R S E N S L E N I L N T Y M I F K K K E D Q K I R - K I F - I L N I - F L R R R K I R K F V R K Y S E Y . . . . . . 47170 GAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGA E W Y L - A R I I Y S E R L L P F Q N - N G I Y R Q E - Y I L K G C Y P F R I D - M V F I G K N N I F - K V A T L S E L . . . . . . 47110 CACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGAATTGACTGTTCCTGAAAGTTGC H D H - - K V A N F Q M E L T V P E S C T T I N E R L Q T F K W N - L F L K V A T R P L M K G C K L S N G I D C S - K L . . . . . . 47050 AACCTTTCAGAACAGTCATGGCGGGAAATTTTGAATATAACGGAATTTAAAACGGGTCAC N L S E Q S W R E I L N I T E F K T G H T F Q N S H G G K F - I - R N L K R V T Q P F R T V M A G N F E Y N G I - N G S . . . . . . 46990 TCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAAATTC S R G S E S G R V N - K V E N I S V K F R A D P S R V G L T K K L K T F R L N S L A R I R V G S G - L K S - K H F G - I . . . . . . 46930 TGTTATCAACTGATTTATTGAAAATAATTTTTGGCCATTTAAATTAATTAATAAATAATT C Y Q L I Y - K - F L A I - I N - - I I V I N - F I E N N F W P F K L I N K - L L L S T D L L K I I F G H L N - L I N N . . . . . . 46870 AAAAATAAATTTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGTCG K N K F C P K N Y L S I D H L P K P K S K I N F V Q K I I S R S I I C Q S Q S R - K - I L S K K L S L D R S F A K A K V . . . . . . 46810 AAGCCGAAGTCGAAGCAAGCGACGACGGCGCGAGGGGTCCCTCTTTTCAACCCTTTTAAC K P K S K Q A T T A R G V P L F N P F N S R S R S K R R R R E G S L F S T L L T E A E V E A S D D G A R G P S F Q P F - . . . . . . 46750 AATTAATAGGAGTGTTTATTTATTTAAACTCTACTATTTTCATTTCCATTACCGATGAGG N - - E C L F I - T L L F S F P L P M R I N R S V Y L F K L Y Y F H F H Y R - G Q L I G V F I Y L N S T I F I S I T D E . . . . . . 46690 GACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTT D Y C L F Q - S I R G L F K F P T F Q V T I A F F N K A L E D F S S S Q P F K F G L L P F S I K H - R T F Q V P N L S S . . . . . . 46630 CTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCA L N F S N S S P S L Y F P S I L A T Y P - T F Q I P L L P S I S H Q F L L H T Q S K L F K F L S F P L F P I N S C Y I P . 46570 ACATTA T L H N I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 46565 TAATGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGGAAGGAGAGGAATTTGAAAA - C W V C S K N - W E I E G R R G I - K N V G Y V A R I D G K - R E G E E F E K M L G M - Q E L M G N R G K E R N L K . . . . . . 46625 GTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTATTGAAAAAGGCA V - N L K G W E L E K S S N A L L K K A F R T - K V G N L K S P L M L Y - K R Q S L E L E R L G T - K V L - C F I E K G . . . . . . 46685 ATAGTCCCTCATCGGTAATGGAAATGAAAATAGTAGAGTTTAAATAAATAAACACTCCTA I V P H R - W K - K - - S L N K - T L L - S L I G N G N E N S R V - I N K H S Y N S P S S V M E M K I V E F K - I N T P . . . . . . 46745 TTAATTGTTAAAAGGGTTGAAAAGAGGGACCCCTCGCGCCGTCGTCGCTTGCTTCGACTT L I V K R V E K R D P S R R R R L L R L - L L K G L K R G T P R A V V A C F D F I N C - K G - K E G P L A P S S L A S T . . . . . . 46805 CGGCTTCGACTTTGGCTTTGGCAAATGATCGATCGAGAGATAATTTTTTGGACAAAATTT R L R L W L W Q M I D R E I I F W T K F G F D F G F G K - S I E R - F F G Q N L S A S T L A L A N D R S R D N F L D K I . . . . . . 46865 ATTTTTAATTATTTATTAATTAATTTAAATGGCCAAAAATTATTTTCAATAAATCAGTTG I F N Y L L I N L N G Q K L F S I N Q L F L I I Y - L I - M A K N Y F Q - I S - Y F - L F I N - F K W P K I I F N K S V . . . . . . 46925 ATAACAGAATTTAACCGAAATGTTTTCAACTTTTTAGTTAACCCGACCCGACTCGGATCC I T E F N R N V F N F L V N P T R L G S - Q N L T E M F S T F - L T R P D S D P D N R I - P K C F Q L F S - P D P T R I . . . . . . 46985 GCGCGAGTGACCCGTTTTAAATTCCGTTATATTCAAAATTTCCCGCCATGACTGTTCTGA A R V T R F K F R Y I Q N F P P - L F - R E - P V L N S V I F K I S R H D C S E R A S D P F - I P L Y S K F P A M T V L . . . . . . 47045 AAGGTTGCAACTTTCAGGAACAGTCAATTCCATTTGAAAGTTTGCAACCTTTCATTAATG K V A T F R N S Q F H L K V C N L S L M R L Q L S G T V N S I - K F A T F H - W K G C N F Q E Q S I P F E S L Q P F I N . . . . . . 47105 GTCGTGTCAATTCTGAAAGGGTAGCAACCTTTCAGAATATATTATTCTTGCCTATAAATA V V S I L K G - Q P F R I Y Y S C L - I S C Q F - K G S N L S E Y I I L A Y K Y G R V N S E R V A T F Q N I L F L P I N . . . . . . 47165 CCATTCAGTATTCAGAATATTTTCTAACGAATTTTCTGATCTTCCTTCTTCTTAAAAATC P F S I Q N I F - R I F - S S F F L K I H S V F R I F S N E F S D L P S S - K S T I Q Y S E Y F L T N F L I F L L L K N . . . . . . 47225 ATATATTTCTTCGTGTACTTTCCTGCTGTGGAATTGATTCGCTGACAGTAGAGTTTTTGG I Y F F V Y F P A V E L I R - Q - S F W Y I S S C T F L L W N - F A D S R V F G H I F L R V L S C C G I D S L T V E F L . . . . . . 47285 TATCTATACTCTACTGATTAAGATCATTTTACCCTGGGAGGTTATATTCCAAATCAAACC Y L Y S T D - D H F T L G G Y I P N Q T I Y T L L I K I I L P W E V I F Q I K P V S I L Y - L R S F Y P G R L Y S K S N . . . . . . 47345 TCGGATACTAGAGGGGAATAATTTCCTTAAGGGGACACTGTGAATTCAGTGGACTTGATT S D T R G E - F P - G D T V N S V D L I R I L E G N N F L K G T L - I Q W T - F L G Y - R G I I S L R G H C E F S G L D . . . . . . 47405 TTCTTCCTAAAAAGAGAAATAAAAGAGTATTCAACATTCTGATAAGTTTTACAGATTAAA F F L K R E I K E Y S T F - - V L Q I K S S - K E K - K S I Q H S D K F Y R L N F L P K K R N K R V F N I L I S F T D - . . . . . . 47465 TTATTTTTTTACAAATAAATTTCTGTTCATCTTATTTACTGGTTCTAAAAATCTCAGTTA L F F Y K - I S V H L I Y W F - K S Q L Y F F T N K F L F I L F T G S K N L S Y I I F L Q I N F C S S Y L L V L K I S V . . . . . . 47525 CTTCGTGTTTCTGAATGATTTATTACAACCAGTAATTTCTGATTTTCTTAACACAGATTG L R V S E - F I T T S N F - F S - H R L F V F L N D L L Q P V I S D F L N T D W T S C F - M I Y Y N Q - F L I F L T Q I . 47585 GCAACA A T Q G N Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-8_AGS-2_PPS_1 (46736 47035) (frame '1'; 297 bp, 99 residues) 1 TLLLIVKRVE KRDPSRRRRL LRLRLRLWLW QMIDREIIFW TKFIFNYLLI NLNGQKLFSI 61 NQLITEFNRN VFNFLVNPTR LGSARVTRFK FRYIQNFPP- >C08HBa0060C12.1+_PGL-8_AGS-2_PPS_2 (47005 47301) (frame '0'; 294 bp, 98 residues) 1 IPLYSKFPAM TVLKGCNFQE QSIPFESLQP FINGRVNSER VATFQNILFL PINTIQYSEY 61 FLTNFLIFLL LKNHIFLRVL SCCGIDSLTV EFLVSILY- AGS-3 (47016 46989,46783 46634) SCR (e 1.000 d 0.000 a 0.000,e 0.960) Exon 1 47016 46989 ( 28 n); score: 1.000 Intron 1 46988 46784 ( 205 n); Pd: 0.000 Pa: 0.000 Exon 2 46783 46634 ( 150 n); score: 0.960 PGS (47016 46989,46783 46634) SGN-E277804+ 3-phase translation of AGS-3 (-strand): . . . : . . . 47016 ATATAACGGAATTTAAAACGGGTCACTC : GCGCGAGGGGTCCCTCTTTTCAACCCTTTTAA I - R N L K R V T : R A R G P S F Q P F - Y N G I - N G S L : A R G V P L F N P F N I T E F K T G H S : R E G S L F S T L L . . . . . . 46751 CAATTAATAGGAGTGTTTATTTATTTAAACTCTACTATTTTCATTTCCATTACCGATGAG Q L I G V F I Y L N S T I F I S I T D E N - - E C L F I - T L L F S F P L P M R T I N R S V Y L F K L Y Y F H F H Y R - . . . . . . 46691 GGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAA G L L P F S I K H - R T F Q V P N L S D Y C L F Q - S I R G L F K F P T F Q G T I A F F N K A L E D F S S S Q P F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (- strand): 51290 48789 AGS-1 (51290 51260,50703 50696,48919 48789) SCR (e 0.710 d 0.593 a 0.000,e 1.000 d 1.000 a 0.000,e 0.931) Exon 1 51290 51260 ( 31 n); score: 0.710 Intron 1 51259 50704 ( 556 n); Pd: 0.593 Pa: 0.000 Exon 2 50703 50696 ( 8 n); score: 1.000 Intron 2 50695 48920 (1776 n); Pd: 1.000 Pa: 0.000 Exon 3 48919 48789 ( 131 n); score: 0.931 PGS (51290 51260,50703 50696,48919 48789) SGN-E392149- PGS (51290 51260,50703 50696,48919 48789) SGN-E369423- PGS (48920 48789) SGN-E375169+ 3-phase translation of AGS-1 (-strand): . . . . : : . . 51290 CAAACCTCAATGAGAATAATTACAACCATAT : ATGTAAAC : ATGTTAAAGAATGACAAAAGT Q T S M R I I T T I : Y V N : M L K N D K S K P Q - E - L Q P Y : M - T : C - R M T K V N L N E N N Y N H I : C K : H V K E - Q K . . . . . . 48898 CTCACATCGGTGATTAATGAGATGGGTGGACTCTTTATAAGGCTCGGGCAATCCTCCTCC L T S V I N E M G G L F I R L G Q S S S S H R - L M R W V D S L - G S G N P P P S H I G D - - D G W T L Y K A R A I L L . . . . . 48838 TTTTAAGCTAGCTTTTGGGGTGTGAATTAGGCCTAAGACCTAACTTCACA F - A S F W G V N - A - D L T S F K L A F G V - I R P K T - L H L L S - L L G C E L G L R P N F T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 10 (+ strand): 49290 57592 AGS-1 (49290 50130,53738 53847,54076 54178) SCR (e 0.847 d 0.000 a 0.000,e 0.927 d 0.989 a 0.999,e 0.893) Exon 1 49290 50130 ( 841 n); score: 0.847 Intron 1 50131 53737 (3607 n); Pd: 0.000 Pa: 0.000 Exon 2 53738 53847 ( 110 n); score: 0.927 Intron 2 53848 54075 ( 228 n); Pd: 0.989 Pa: 0.999 Exon 3 54076 54178 ( 103 n); score: 0.893 PGS (49290 50108) SGN-E553649+ PGS (49300 50073) SGN-E554337+ PGS (49463 49948) SGN-E318770+ PGS (49806 50130,53738 53847,54076 54178) SGN-E206806+ 3-phase translation of AGS-1 (+strand): . . . . . . 49290 ATCCCTCTAACAATGTCTATCAAATCCCTTTTTGATGATTTTTTTCCATGGCCCCTTCAA I P L T M S I K S L F D D F F P W P L Q S L - Q C L S N P F L M I F F H G P F K P S N N V Y Q I P F - - F F S M A P S . . . . . . 49350 GAACTCACTGTTGAGCAAAAGGGTGTGTTTTTATCCTGTTTTCTTGGTGTTTTAGCTTTA E L T V E Q K G V F L S C F L G V L A L N S L L S K R V C F Y P V F L V F - L Y R T H C - A K G C V F I L F S W C F S F . . . . . . 49410 CTATGGTTTTTCATCAGAAAGTCAAACAAGGGGTTGCCACCAGGCCCTAAAGCTTTGCCC L W F F I R K S N K G L P P G P K A L P Y G F S S E S Q T R G C H Q A L K L C P T M V F H Q K V K Q G V A T R P - S F A . . . . . . 49470 TTGATAGGTAATCTTCATTCTCTTGAACCTCAACTTCATACCTATTTTGCATCTCTTTCC L I G N L H S L E P Q L H T Y F A S L S - - V I F I L L N L N F I P I L H L F P L D R - S S F S - T S T S Y L F C I S F . . . . . . 49530 CAAACGTATGGCCCCATATGTAGACTCTGGCTTGGTAAAAAAATTGGGATTATTATTACT Q T Y G P I C R L W L G K K I G I I I T K R M A P Y V D S G L V K K L G L L L L P N V W P H M - T L A W - K N W D Y Y Y . . . . . . 49590 TCTCCTGAATTAGCTCGTGAGGTTCTTAAGGATCAAGATACCATTTTTGCTAACAGAGAT S P E L A R E V L K D Q D T I F A N R D L L N - L V R F L R I K I P F L L T E M F S - I S S - G S - G S R Y H F C - Q R . . . . . . 49650 GTCCCTGCTGCTGGTAGAGAAGCTACATATGGTGGCAATGACATAACTTGGACTCCTTAT V P A A G R E A T Y G G N D I T W T P Y S L L L V E K L H M V A M T - L G L L M C P C C W - R S Y I W W Q - H N L D S L . . . . . . 49710 GGACCCAAATGGCGTATGTTGAGGAAGGTTTGTGTTCGTGATATGCTTAGTTCTTCTACT G P K W R M L R K V C V R D M L S S S T D P N G V C - G R F V F V I C L V L L L W T Q M A Y V E E G L C S - Y A - F F Y . . . . . . 49770 TTAGATTCTGTTTATGCATTAAGGAAAAAGGAGCTTAGACAGACAATCAATTACTTCTAT L D S V Y A L R K K E L R Q T I N Y F Y - I L F M H - G K R S L D R Q S I T S I F R F C L C I K E K G A - T D N Q L L L . . . . . . 49830 AACAAGGCAGGATCGCCTGTGAATGTTGGTGAACAGATGTTCTTGACTATTCTTAATGTG N K A G S P V N V G E Q M F L T I L N V T R Q D R L - M L V N R C S - L F L M - - Q G R I A C E C W - T D V L D Y S - C . . . . . . 49890 ATTACAAGCATGTTATGGGGTGCTACAGTGAAGGGTGAGGAAAGAGCTAATCTTGGGGCA I T S M L W G A T V K G E E R A N L G A L Q A C Y G V L Q - R V R K E L I L G Q D Y K H V M G C Y S E G - G K S - S W G . . . . . . 49950 GAGTTTAGGCATGTTGTGAATGAAATGACTGAGCTGTTAGGTACTCCAAATGTTTCTGAT E F R H V V N E M T E L L G T P N V S D S L G M L - M K - L S C - V L Q M F L I R V - A C C E - N D - A V R Y S K C F - . . . . . . 50010 TTTTATCCGGGCTTGGAGTGGTTCGATTTGCAGGGTGTTACAAAGAAGATGAAAGTGTTG F Y P G L E W F D L Q G V T K K M K V L F I R A W S G S I C R V L Q R R - K C W F L S G L G V V R F A G C Y K E D E S V . . . . . . 50070 GCAAAGAGATTTGATGCGATATTTGAGAGCATGATTGATCAAAGACAGAAAATGGATAGA A K R F D A I F E S M I D Q R Q K M D R Q R D L M R Y L R A - L I K D R K W I E G K E I - C D I - E H D - S K T E N G - . : . . . . . 50130 A : CTGGTGTTGGTCAAGAAAGCAAGGACTTTTTGCAAGTTTTGCTGAAGTTGAAAGATGAA : T G V G Q E S K D F L Q V L L K L K D E : L V L V K K A R T F C K F C - S - K M K N : W C W S R K Q G L F A S F A E V E R - . . . . . . : 53797 GCAGATTCCAAAATGCCTCTGTCTATGACTGAACTCAAAGCCTTACTTATG : GATATGGTT A D S K M P L S M T E L K A L L M : D M V Q I P K C L C L - L N S K P Y L W : I W L S R F Q N A S V Y D - T Q S L T Y : G Y G . . . . . . 54085 GTCGGTGGAACTGCTACGACCTCCAACACGGTTGAGTTTGCCATGGCTGAAATTATGAAC V G G T A T T S N T V E F A M A E I M N S V E L L R P P T R L S L P W L K L - T C R W N C Y D L Q H G - V C H G - N Y E . . . . 54145 AAACGAGATATCCTGAGAAAATTACAAGAAGTAG K R D I L R K L Q E V N E I S - E N Y K K - Q T R Y P E K I T R S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-10_AGS-1_PPS_1 (49290 50130,53738 53847,54076 54177) (frame '1'; 1053 bp, 351 residues) 1 IPLTMSIKSL FDDFFPWPLQ ELTVEQKGVF LSCFLGVLAL LWFFIRKSNK GLPPGPKALP 61 LIGNLHSLEP QLHTYFASLS QTYGPICRLW LGKKIGIIIT SPELAREVLK DQDTIFANRD 121 VPAAGREATY GGNDITWTPY GPKWRMLRKV CVRDMLSSST LDSVYALRKK ELRQTINYFY 181 NKAGSPVNVG EQMFLTILNV ITSMLWGATV KGEERANLGA EFRHVVNEMT ELLGTPNVSD 241 FYPGLEWFDL QGVTKKMKVL AKRFDAIFES MIDQRQKMDR TGVGQESKDF LQVLLKLKDE 301 ADSKMPLSMT ELKALLMDMV VGGTATTSNT VEFAMAEIMN KRDILRKLQE V AGS-2 (49806 50255,50503 51119,52101 52170,52716 52745,52835 53125) SCR (e 0.838 d 0.994 a 0.999,e 0.900 d 0.816 a 0.906,e 0.557 d 0.339 a 0.135,e 0.567 d 0.000 a 0.000,e 0.784) Exon 1 49806 50255 ( 450 n); score: 0.838 Intron 1 50256 50502 ( 247 n); Pd: 0.994 Pa: 0.999 Exon 2 50503 51119 ( 617 n); score: 0.900 Intron 2 51120 52100 ( 981 n); Pd: 0.816 Pa: 0.906 Exon 3 52101 52170 ( 70 n); score: 0.557 Intron 3 52171 52715 ( 545 n); Pd: 0.339 Pa: 0.135 Exon 4 52716 52745 ( 30 n); score: 0.567 Intron 4 52746 52834 ( 89 n); Pd: 0.000 Pa: 0.000 Exon 5 52835 53125 ( 291 n); score: 0.784 PGS (49806 50255,50503 50789) SGN-E378935+ PGS (49837 50255,50503 50570) SGN-E205363+ PGS (50212 50255,50503 51143) SGN-E378974- PGS (50625 51133) SGN-E551573+ PGS (50819 51078) SGN-E234103- PGS (50822 51078) SGN-E234174- PGS (50827 51119,52101 52170,52716 52745,52835 53125) SGN-E320419+ PGS (50887 51119) SGN-E243190+ 3-phase translation of AGS-2 (+strand): . . . . . . 49806 AGACAGACAATCAATTACTTCTATAACAAGGCAGGATCGCCTGTGAATGTTGGTGAACAG R Q T I N Y F Y N K A G S P V N V G E Q D R Q S I T S I T R Q D R L - M L V N R T D N Q L L L - Q G R I A C E C W - T . . . . . . 49866 ATGTTCTTGACTATTCTTAATGTGATTACAAGCATGTTATGGGGTGCTACAGTGAAGGGT M F L T I L N V I T S M L W G A T V K G C S - L F L M - L Q A C Y G V L Q - R V D V L D Y S - C D Y K H V M G C Y S E G . . . . . . 49926 GAGGAAAGAGCTAATCTTGGGGCAGAGTTTAGGCATGTTGTGAATGAAATGACTGAGCTG E E R A N L G A E F R H V V N E M T E L R K E L I L G Q S L G M L - M K - L S C - G K S - S W G R V - A C C E - N D - A . . . . . . 49986 TTAGGTACTCCAAATGTTTCTGATTTTTATCCGGGCTTGGAGTGGTTCGATTTGCAGGGT L G T P N V S D F Y P G L E W F D L Q G - V L Q M F L I F I R A W S G S I C R V V R Y S K C F - F L S G L G V V R F A G . . . . . . 50046 GTTACAAAGAAGATGAAAGTGTTGGCAAAGAGATTTGATGCGATATTTGAGAGCATGATT V T K K M K V L A K R F D A I F E S M I L Q R R - K C W Q R D L M R Y L R A - L C Y K E D E S V G K E I - C D I - E H D . . . . . . 50106 GATCAAAGACAGAAAATGGATAGAAATTCTGAGATGGGAGCTGGTGTTGGTCAAGAAAGC D Q R Q K M D R N S E M G A G V G Q E S I K D R K W I E I L R W E L V L V K K A - S K T E N G - K F - D G S W C W S R K . . . . . . 50166 AAGGATTTTTTGCAAGTTTTGCTCAAGTTGAAAGATGAAGCAGATTCCAAAATGCCTCTG K D F L Q V L L K L K D E A D S K M P L R I F C K F C S S - K M K Q I P K C L - Q G F F A S F A Q V E R - S R F Q N A S . . . : . . . 50226 ACTATGATTGAACTCAAAGCCTTACTCATG : GATATGGTTGTTGGTGGAACTGACACTACC T M I E L K A L L M : D M V V G G T D T T L - L N S K P Y S W : I W L L V E L T L P D Y D - T Q S L T H : G Y G C W W N - H Y . . . . . . 50533 GCCAACGTAGTTGAGTTTGCCATGGCTGAGATTATGAACAAACGAGATATCTTGAGGAAA A N V V E F A M A E I M N K R D I L R K P T - L S L P W L R L - T N E I S - G N R Q R S - V C H G - D Y E Q T R Y L E E . . . . . . 50593 TTACAACAAGAACTAGATACAGTCGTGGGAAAAGATAACATAGTGGAAGAGTCTCATATT L Q Q E L D T V V G K D N I V E E S H I Y N K N - I Q S W E K I T - W K S L I F I T T R T R Y S R G K R - H S G R V S Y . . . . . . 50653 CAACAGTTGCCATATTTCTATGCAGTTATGAAAGAAGCCTTGCGTTTACATCCAGCTCTT Q Q L P Y F Y A V M K E A L R L H P A L N S C H I S M Q L - K K P C V Y I Q L F S T V A I F L C S Y E R S L A F T S S S . . . . . . 50713 CCACTCTTGGTGCCACATTGTCCTAGTGAGACAGTCACTGTTGGAGGATACACTATTCCT P L L V P H C P S E T V T V G G Y T I P H S W C H I V L V R Q S L L E D T L F L S T L G A T L S - - D S H C W R I H Y S . . . . . . 50773 GAAGGATCTCGTGTATTTATAAATGTATGGGCTATACAGCGAGATCCTTCTATATGGGAA E G S R V F I N V W A I Q R D P S I W E K D L V Y L - M Y G L Y S E I L L Y G K - R I S C I Y K C M G Y T A R S F Y M G . . . . . . 50833 AATCCAACTGAGTTCCGTCCAGAGAGATTTTTGGACAATAAGTGGGATTATAGTGGAAAT N P T E F R P E R F L D N K W D Y S G N I Q L S S V Q R D F W T I S G I I V E M K S N - V P S R E I F G Q - V G L - W K . . . . . . 50893 GATTTCAACTATTTCCCATTTGGTTCTGGCAGAAGAATCTGTGCGGGGATAGGCATGGCA D F N Y F P F G S G R R I C A G I G M A I S T I S H L V L A E E S V R G - A W Q - F Q L F P I W F W Q K N L C G D R H G . . . . . . 50953 GAGAGGATGTTCATGTATTCACTGGCTTCACTCGTGCATTCTTTCGACTGGAAATTGCCT E R M F M Y S L A S L V H S F D W K L P R G C S C I H W L H S C I L S T G N C L R E D V H V F T G F T R A F F R L E I A . . . . . . 51013 GAAGGAGAGACATTAGACCTCACAGAGAAGTTTGGGATTGTTCTGAAGAAGAAGATGCCT E G E T L D L T E K F G I V L K K K M P K E R H - T S Q R S L G L F - R R R C L - R R D I R P H R E V W D C S E E E D A . . . . . : . 51073 CTGGTGGCTATACCTACTCCAAGATTATCCAATCCAACACTCTATGA : GCTACATTCGAAG L V A I P T P R L S N P T L Y E : L H S K W W L Y L L Q D Y P I Q H S M : S Y I R S S G G Y T Y S K I I Q S N T L - : A T F E . . . . . . : 52114 TGAAGAAAGATATGAAAGAATCACATGTCGGAGATGATAATTGCGAAGTGACCTTAA : CTG - R K I - K N H M S E M I I A K - P - : L E E R Y E R I T C R R - - L R S D L N : C V K K D M K E S H V G D D N C E V T L : T . . . : . . . 52719 CCAAATCTCAACTTTTATGGGTGCAAA : TGAGCTTCCCACTACATTGGTTCTGCCAATTTC P N L N F Y G C K : - A S H Y I G S A N F Q I S T F M G A N : E L P T T L V L P I S A K S Q L L W V Q : M S F P L H W F C Q F . . . . . . 52868 CATTTCCTTCTTAGGCTCAAACAATGTCTCTCAAATTCTCCAAACCTCTGTTTGATTCTT H F L L R L K Q C L S N S P N L C L I L I S F L G S N N V S Q I L Q T S V - F F P F P S - A Q T M S L K F S K P L F D S . . . . . . 52928 TCTCATTTCCCTGGCAAGAATCAAATATTGAGCAAAAAAGGTGCATTTTTATCCTATGTT S H F P G K N Q I L S K K G A F L S Y V L I S L A R I K Y - A K K V H F Y P M F F S F P W Q E S N I E Q K R C I F I L C . . . . . . 52988 CTTGGTATTATAGGTTTACGATGGTTTCTTTGGCTTTTCACTAACAAGTCAAAAAAGGGA L G I I G L R W F L W L F T N K S K K G L V L - V Y D G F F G F S L T S Q K R D S W Y Y R F T M V S L A F H - Q V K K G . . . . . . 53048 CAACCCCCGTTGCCACCGGGGCCTAAAGCTTTACCTTTACTAGGTAATCTCCATTCTGTT Q P P L P P G P K A L P L L G N L H S V N P R C H R G L K L Y L Y - V I S I L L T T P V A T G A - S F T F T R - S P F C . . 53108 GAACCTCAACTTCGCACC E P Q L R T N L N F A - T S T S H Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-10_AGS-2_PPS_1 (49806 50255,50503 51119,52101 52116) (frame '1'; 1080 bp, 360 residues) 1 RQTINYFYNK AGSPVNVGEQ MFLTILNVIT SMLWGATVKG EERANLGAEF RHVVNEMTEL 61 LGTPNVSDFY PGLEWFDLQG VTKKMKVLAK RFDAIFESMI DQRQKMDRNS EMGAGVGQES 121 KDFLQVLLKL KDEADSKMPL TMIELKALLM DMVVGGTDTT ANVVEFAMAE IMNKRDILRK 181 LQQELDTVVG KDNIVEESHI QQLPYFYAVM KEALRLHPAL PLLVPHCPSE TVTVGGYTIP 241 EGSRVFINVW AIQRDPSIWE NPTEFRPERF LDNKWDYSGN DFNYFPFGSG RRICAGIGMA 301 ERMFMYSLAS LVHSFDWKLP EGETLDLTEK FGIVLKKKMP LVAIPTPRLS NPTLYELHSK 361 - >C08HBa0060C12.1+_PGL-10_AGS-2_PPS_2 (52838 53125) (frame '1'; 288 bp, 96 residues) 1 ASHYIGSANF HFLLRLKQCL SNSPNLCLIL SHFPGKNQIL SKKGAFLSYV LGIIGLRWFL 61 WLFTNKSKKG QPPLPPGPKA LPLLGNLHSV EPQLRT AGS-3 (53440 53847,54076 54143) SCR (e 0.830 d 0.989 a 0.999,e 0.868) Exon 1 53440 53847 ( 408 n); score: 0.830 Intron 1 53848 54075 ( 228 n); Pd: 0.989 Pa: 0.999 Exon 2 54076 54143 ( 68 n); score: 0.868 PGS (53440 53847,54076 54143) SGN-E205363+ 3-phase translation of AGS-3 (+strand): . . . . . . 53440 GGATTGCCTGTGAATGTTGGTGAAAAGATGTTCTTGACTATGTTTAACGTGATTACAAGC G L P V N V G E K M F L T M F N V I T S D C L - M L V K R C S - L C L T - L Q A I A C E C W - K D V L D Y V - R D Y K . . . . . . 53500 ATGTTATGGGGTGGCACAGTGAAGGGTGAGGAAAGAGCTAATCTTGGGGCAGAGTTTAGG M L W G G T V K G E E R A N L G A E F R C Y G V A Q - R V R K E L I L G Q S L G H V M G W H S E G - G K S - S W G R V - . . . . . . 53560 CATGTTGTGTATGGAATACTGAGCTGTTAGGTACTCCAAATGTTTCCGATTTGCTTGGAC H V V Y G I L S C - V L Q M F P I C L D M L C M E Y - A V R Y S K C F R F A W T A C C V W N T E L L G T P N V S D L L G . . . . . . 53620 TGGTTCGATTTGCAGGGTGTTACAAAGAAGATGAAAGTGTTGGCAAAGAGATTTGATACG W F D L Q G V T K K M K V L A K R F D T G S I C R V L Q R R - K C W Q R D L I R L V R F A G C Y K E D E S V G K E I - Y . . . . . . 53680 ATATTTGAGAGCATGATTGATCAAAGACAGAAAATGGATGGAAATACTGAGATGGGAGCT I F E S M I D Q R Q K M D G N T E M G A Y L R A - L I K D R K W M E I L R W E L D I - E H D - S K T E N G W K Y - D G S . . . . . . 53740 GGTGTTGGTCAAGAAAGCAAGGACTTTTTGCAAGTTTTGCTGAAGTTGAAAGATGAAGCA G V G Q E S K D F L Q V L L K L K D E A V L V K K A R T F C K F C - S - K M K Q W C W S R K Q G L F A S F A E V E R - S . . . . . : . 53800 GATTCCAAAATGCCTCTGTCTATGACTGAACTCAAAGCCTTACTTATG : GATATGGTTGTC D S K M P L S M T E L K A L L M : D M V V I P K C L C L - L N S K P Y L W : I W L S R F Q N A S V Y D - T Q S L T Y : G Y G C . . . . . . 54088 GGTGGAACTGCTACGACCTCCAACACGGTTGAGTTTGCCATGGCTGAAATTATGAA G G T A T T S N T V E F A M A E I M V E L L R P P T R L S L P W L K L - R W N C Y D L Q H G - V C H G - N Y E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-10_AGS-3_PPS_1 (53590 53847,54076 54141) (frame '1'; 324 bp, 108 residues) 1 VLQMFPICLD WFDLQGVTKK MKVLAKRFDT IFESMIDQRQ KMDGNTEMGA GVGQESKDFL 61 QVLLKLKDEA DSKMPLSMTE LKALLMDMVV GGTATTSNTV EFAMAEIM AGS-4 (54397 54689,55000 55006,55282 55358,55434 56472,56584 57207) SCR (e 0.884 d 0.787 a 0.000,e 0.714 d 0.707 a 0.000,e 0.701 d 0.981 a 0.000,e 0.823 d 0.997 a 0.999,e 0.916) Exon 1 54397 54689 ( 293 n); score: 0.884 Intron 1 54690 54999 ( 310 n); Pd: 0.787 Pa: 0.000 Exon 2 55000 55006 ( 7 n); score: 0.714 Intron 2 55007 55281 ( 275 n); Pd: 0.707 Pa: 0.000 Exon 3 55282 55358 ( 77 n); score: 0.701 Intron 3 55359 55433 ( 75 n); Pd: 0.981 Pa: 0.000 Exon 4 55434 56472 (1039 n); score: 0.823 Intron 4 56473 56583 ( 111 n); Pd: 0.997 Pa: 0.999 Exon 5 56584 57207 ( 624 n); score: 0.916 PGS (54397 54689,55000 55006,55282 55358,55434 55728) SGN-E320419+ PGS (55495 56325) SGN-E553649+ PGS (55501 56290) SGN-E554337+ PGS (55680 56165) SGN-E318770+ PGS (56023 56472,56584 56870) SGN-E378935+ PGS (56023 56472,56584 56686) SGN-E206806+ PGS (56055 56472,56584 56651) SGN-E205363+ PGS (56429 56472,56584 57200) SGN-E378974- PGS (56706 57207) SGN-E551573+ PGS (56900 57159) SGN-E234103- PGS (56903 57159) SGN-E234174- PGS (56908 57200) SGN-E320419+ PGS (56968 57200) SGN-E243190+ 3-phase translation of AGS-4 (+strand): . . . . . . 54397 TGTGAAAATCCAACTGAGTTCCATCCAGAAAAATTTTTGGACAATAAATGTGATTATAGT C E N P T E F H P E K F L D N K C D Y S V K I Q L S S I Q K N F W T I N V I I V - K S N - V P S R K I F G Q - M - L - . . . . . . 54457 GGAAATGATTTGAACTATTTCCCATTTGGTTCTGGCAGAAGAATGTGTGCGGGGATAGCC G N D L N Y F P F G S G R R M C A G I A E M I - T I S H L V L A E E C V R G - P W K - F E L F P I W F W Q K N V C G D S . . . . . . 54517 ATGGCAGAGAGGATGTTCATGTTTTTACTGGCATCACTCATTCATTCTTTCAACTGGACA M A E R M F M F L L A S L I H S F N W T W Q R G C S C F Y W H H S F I L S T G Q H G R E D V H V F T G I T H S F F Q L D . . . . . . 54577 ATGTCTGAAGGGGAGAATTTAGACCTTACAGAGATGTTTGGGATTGTTCTGAAGAAGAAA M S E G E N L D L T E M F G I V L K K K C L K G R I - T L Q R C L G L F - R R K N V - R G E F R P Y R D V W D C S E E E . . . . . . : : 54637 ATGCCTCTGGTGGCTATCCCAACTCCAAGATTATCCAATCCAACACTCTATGA : GAAAGAT : M P L V A I P T P R L S N P T L Y E : K D : C L W W L S Q L Q D Y P I Q H S M : R K I : N A S G G Y P N S K I I Q S N T L - : E R : . . . . . . 55282 AAGGTATCAACATCTGAAGATTCATTTGCACTACCCAACAAAGGTCATTGACTTCTTCAC K V S T S E D S F A L P N K G H - L L H R Y Q H L K I H L H Y P T K V I D F F T - G I N I - R F I C T T Q Q R S L T S S . . : . . . . 55342 TTATTTGAATACCCAAG : TGGTGTTAGCTTCCCACAACATTGGTTCTGCCAATTTCCATAT L F E Y P S : G V S F P Q H W F C Q F P Y Y L N T Q : V V L A S H N I G S A N F H I L I - I P K : W C - L P T T L V L P I S I . . . . . . 55477 CCCTCTTAGGCTCAAATAATGTCTCTCAAATTCTTCAAACGTCTCTTTGATTTTTACTCA P S - A Q I M S L K F F K R L F D F Y S P L R L K - C L S N S S N V S L I F T H S L L G S N N V S Q I L Q T S L - F L L . . . . . . 55537 TGTTCTTGGCAAGAATCAAATATTGAGCAAAAGGGTGTATTTTTCTCCTATATTCTTGGT C S W Q E S N I E Q K G V F F S Y I L G V L G K N Q I L S K R V Y F S P I F L V M F L A R I K Y - A K G C I F L L Y S W . . . . . . 55597 ATTGTAGCTTTACTATGGTTTCTTTGGCTTTTCATAAACAAGTCAAAAAAGGGACAACCC I V A L L W F L W L F I N K S K K G Q P L - L Y Y G F F G F S - T S Q K R D N P Y C S F T M V S L A F H K Q V K K G T T . . . . . . 55657 CAATTGCCACCGGGACCTAAAGCTTTGCCTTTGATAGGTAATCTCCATTCTCTTGATCCT Q L P P G P K A L P L I G N L H S L D P N C H R D L K L C L - - V I S I L L I L P I A T G T - S F A F D R - S P F S - S . . . . . . 55717 CAACTTCACACCTATTTTGCATCTCTTTCCCAAACTTATGGCCCCATTTATACACTCTGG Q L H T Y F A S L S Q T Y G P I Y T L W N F T P I L H L F P K L M A P F I H S G S T S H L F C I S F P N L W P H L Y T L . . . . . . 55777 CTTGGTAAAAAAGTTGGGATTATTATTACTTCGCCTGCCTTAGCTCGTGAGGTTCTTAAG L G K K V G I I I T S P A L A R E V L K L V K K L G L L L L R L P - L V R F L R A W - K S W D Y Y Y F A C L S S - G S - . . . . . . 55837 GATCAAGATACCATTTTCGCTAATAGAGATGTGCCTGCTGCTGGTAGAGAAGCTACATAT D Q D T I F A N R D V P A A G R E A T Y I K I P F S L I E M C L L L V E K L H M G S R Y H F R - - R C A C C W - R S Y I . . . . . . 55897 GGTGGCACTGATATAGTTTGGACTCCTTATGGACCGAAATGGCGCATGTTGAGAAAAGTT G G T D I V W T P Y G P K W R M L R K V V A L I - F G L L M D R N G A C - E K F W W H - Y S L D S L W T E M A H V E K S . . . . . . 55957 TGTGTTCGCGAAATGCTTAGTGGTTCTACTTTAGATTCTGTTTATGCATTAAGGCGACGG C V R E M L S G S T L D S V Y A L R R R V F A K C L V V L L - I L F M H - G D G L C S R N A - W F Y F R F C L C I K A T . . . . . . 56017 GAGCTTAGACAAACGATCAATTACTTCTATAGTCAGGAAGGATTGCCTGTGAATATAGGT E L R Q T I N Y F Y S Q E G L P V N I G S L D K R S I T S I V R K D C L - I - V G A - T N D Q L L L - S G R I A C E Y R . . . . . . 56077 GAACAGATGTTCTTGACTGTGCTTAATGTGATTACAAGCATGTTATGGGGCGGCACAGTG E Q M F L T V L N V I T S M L W G G T V N R C S - L C L M - L Q A C Y G A A Q - - T D V L D C A - C D Y K H V M G R H S . . . . . . 56137 AAGGGTGAGGAAAGATCCACTCTTGGGGCAGAGTTTAGGCATGTTGTCACTAAGATGACT K G E E R S T L G A E F R H V V T K M T R V R K D P L L G Q S L G M L S L R - L E G - G K I H S W G R V - A C C H - D D . . . . . . 56197 GAACTGTTAGGTACTCCAAATCTTTCTGATTTTTATCCGGGCTTGGCCAGGTTTGATTTG E L L G T P N L S D F Y P G L A R F D L N C - V L Q I F L I F I R A W P G L I C - T V R Y S K S F - F L S G L G Q V - F . . . . . . 56257 CAGGGTGTTACAAAGAAGATGAAAGTATTGGCAAAGAGATTTGATAAGATATTCGAGAGC Q G V T K K M K V L A K R F D K I F E S R V L Q R R - K Y W Q R D L I R Y S R A A G C Y K E D E S I G K E I - - D I R E . . . . . . 56317 ATGATTGATAAAAGACAGGATATTGATAGAAATGGTGGGATGGAAACTGGTGTTGGCCAA M I D K R Q D I D R N G G M E T G V G Q - L I K D R I L I E M V G W K L V L A K H D - - K T G Y - - K W W D G N W C W P . . . . . . 56377 GAAAATAAGGATTTTTTGCAAGTTTTGCTGAAACTGAAAGATGATGAAGCTGCCAAAATG E N K D F L Q V L L K L K D D E A A K M K I R I F C K F C - N - K M M K L P K C R K - G F F A S F A E T E R - - S C Q N . . . . : . . 56437 CCTTTGACCATGCCTGAACTCAAAGCCTTACTCATG : GATATGGTTGTCGGTGGAACTGAC P L T M P E L K A L L M : D M V V G G T D L - P C L N S K P Y S W : I W L S V E L T A F D H A - T Q S L T H : G Y G C R W N - . . . . . . 56608 ACAACCTCCAACACGGTTGAGTTTGCCATGGCTGAAATTGTGAACAAACCATACGTCCTG T T S N T V E F A M A E I V N K P Y V L Q P P T R L S L P W L K L - T N H T S - H N L Q H G - V C H G - N C E Q T I R P . . . . . . 56668 AGGAAATTACAAGAAGAAGTAGATACAGTTGTGGGTAAAGATAACATAGTAGAAGAGTCT R K L Q E E V D T V V G K D N I V E E S G N Y K K K - I Q L W V K I T - - K S L E E I T R R S R Y S C G - R - H S R R V . . . . . . 56728 CATATTCAACACTTACCATATTTCTATGCAGTTATGAAAGAAGTCTTGCGTCTACATCCA H I Q H L P Y F Y A V M K E V L R L H P I F N T Y H I S M Q L - K K S C V Y I Q S Y S T L T I F L C S Y E R S L A S T S . . . . . . 56788 GCGCTTCCACTCTTGGTTCCTCATTGTCCTAGTGAGACGAGCACTGTTGGAGGATACACT A L P L L V P H C P S E T S T V G G Y T R F H S W F L I V L V R R A L L E D T L S A S T L G S S L S - - D E H C W R I H . . . . . . 56848 GTTCCTAAAGGATCTCGTGTTTTCATAAATGTATGGGCTATACAGCGAGATCCTTCTATA V P K G S R V F I N V W A I Q R D P S I F L K D L V F S - M Y G L Y S E I L L Y C S - R I S C F H K C M G Y T A R S F Y . . . . . . 56908 TGGGAAAATCCAACAGAGTTCCGTCCAGAGAGATTTTTGGACAATAAGTGGGATTATAGT W E N P T E F R P E R F L D N K W D Y S G K I Q Q S S V Q R D F W T I S G I I V M G K S N R V P S R E I F G Q - V G L - . . . . . . 56968 GGAAATGATCTCAACTACTTCCCATTTGGTTCTGGCAGAAGAATCTGTGCGGGGATAGGC G N D L N Y F P F G S G R R I C A G I G E M I S T T S H L V L A E E S V R G - A W K - S Q L L P I W F W Q K N L C G D R . . . . . . 57028 ATGGCAGAGAGGATGTTCATGTATTCACTGGCTTCACTCGTGCATTCTTTCGACTGGAAA M A E R M F M Y S L A S L V H S F D W K W Q R G C S C I H W L H S C I L S T G N H G R E D V H V F T G F T R A F F R L E . . . . . . 57088 TTGCCTGAAGGAGAGACGTTAGACCTTACAGAGAAGTTTGGAATTGTTCTGAAGAAGAAA L P E G E T L D L T E K F G I V L K K K C L K E R R - T L Q R S L E L F - R R K I A - R R D V R P Y R E V W N C S E E E . . . . . . 57148 ATGCCTCTGGTAGCTATACCTACTCCAAGATTATCCAATCCGACACTGTATGAGTAAGAT M P L V A I P T P R L S N P T L Y E - D C L W - L Y L L Q D Y P I R H C M S K N A S G S Y T Y S K I I Q S D T V - V R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-10_AGS-4_PPS_1 (55486 56472,56584 57204) (frame '1'; 1605 bp, 535 residues) 1 AQIMSLKFFK RLFDFYSCSW QESNIEQKGV FFSYILGIVA LLWFLWLFIN KSKKGQPQLP 61 PGPKALPLIG NLHSLDPQLH TYFASLSQTY GPIYTLWLGK KVGIIITSPA LAREVLKDQD 121 TIFANRDVPA AGREATYGGT DIVWTPYGPK WRMLRKVCVR EMLSGSTLDS VYALRRRELR 181 QTINYFYSQE GLPVNIGEQM FLTVLNVITS MLWGGTVKGE ERSTLGAEFR HVVTKMTELL 241 GTPNLSDFYP GLARFDLQGV TKKMKVLAKR FDKIFESMID KRQDIDRNGG METGVGQENK 301 DFLQVLLKLK DDEAAKMPLT MPELKALLMD MVVGGTDTTS NTVEFAMAEI VNKPYVLRKL 361 QEEVDTVVGK DNIVEESHIQ HLPYFYAVMK EVLRLHPALP LLVPHCPSET STVGGYTVPK 421 GSRVFINVWA IQRDPSIWEN PTEFRPERFL DNKWDYSGND LNYFPFGSGR RICAGIGMAE 481 RMFMYSLASL VHSFDWKLPE GETLDLTEKF GIVLKKKMPL VAIPTPRLSN PTLYE- >C08HBa0060C12.1+_PGL-10_AGS-4_PPS_2 (54397 54689,55000 55006,55282 55332) (frame '1'; 348 bp, 116 residues) 1 CENPTEFHPE KFLDNKCDYS GNDLNYFPFG SGRRMCAGIA MAERMFMFLL ASLIHSFNWT 61 MSEGENLDLT EMFGIVLKKK MPLVAIPTPR LSNPTLYEKD KVSTSEDSFA LPNKGH- AGS-5 (57423 57592) SCR (e 0.832) Exon 1 57423 57592 ( 170 n); score: 0.832 PGS (57423 57592) SGN-E318957+ 3-phase translation of AGS-5 (+strand): . . . . . . 57423 CATATCATCGTATCATATACTCCCTCCCAATCAAAAAGGATGACCTAATTTGATTTGTAA H I I V S Y T P S Q S K R M T - F D L - I S S Y H I L P P N Q K G - P N L I C N Y H R I I Y S L P I K K D D L I - F V . . . . . . 57483 CGGAGTTTAAGAATAGAAAGAAATTTTTTAATCTTGTGGTTCTATATTAAAGTTATGTCA R S L R I E R N F L I L W F Y I K V M S G V - E - K E I F - S C G S I L K L C Q T E F K N R K K F F N L V V L Y - S Y V . . . . . 57543 AATGTACCAAAATGTCCTTTAATCTTGTGGTCTTAAACATGCCACGTGGA N V P K C P L I L W S - T C H V M Y Q N V L - S C G L K H A T W K C T K M S F N L V V L N M P R G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-5 (-strand): . . . . . . 57592 TCCACGTGGCATGTTTAAGACCACAAGATTAAAGGACATTTTGGTACATTTGACATAACT S T W H V - D H K I K G H F G T F D I T P R G M F K T T R L K D I L V H L T - L H V A C L R P Q D - R T F W Y I - H N . . . . . . 57532 TTAATATAGAACCACAAGATTAAAAAATTTCTTTCTATTCTTAAACTCCGTTACAAATCA L I - N H K I K K F L S I L K L R Y K S - Y R T T R L K N F F L F L N S V T N Q F N I E P Q D - K I S F Y S - T P L Q I . . . . . 57472 AATTAGGTCATCCTTTTTGATTGGGAGGGAGTATATGATACGATGATATG N - V I L F D W E G V Y D T M I I R S S F L I G R E Y M I R - Y K L G H P F - L G G S I - Y D D M Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (+ strand): 60496 61142 AGS-1 (60496 60684,60766 61142) SCR (e 0.746 d 0.000 a 0.950,e 0.796) Exon 1 60496 60684 ( 189 n); score: 0.746 Intron 1 60685 60765 ( 81 n); Pd: 0.000 Pa: 0.950 Exon 2 60766 61142 ( 377 n); score: 0.796 PGS (60496 60684,60766 61142) SGN-E547025- 3-phase translation of AGS-1 (+strand): . . . . . . 60496 AAGTCAATTTCGTAAGTTATCCTTAATTTTAGTTGTTTACCTTTTTTTCTAACTTATCTA K S I S - V I L N F S C L P F F L T Y L S Q F R K L S L I L V V Y L F F - L I - V N F V S Y P - F - L F T F F S N L S . . . . . . 60556 AAAATTGTATATGTGTTTTGTTTTTTTTTCTTCATATATTTTGATGAAATAATCGTTTTT K I V Y V F C F F F F I Y F D E I I V F K L Y M C F V F F S S Y I L M K - S F F K N C I C V L F F F L H I F - - N N R F . . . . . . 60616 TTGTTCTTGATAGATCTAAAATTCGTCAAACAATGAACGAATCGTCTACATCTTTGAGGA L F L I D L K F V K Q - T N R L H L - G C S - - I - N S S N N E R I V Y I F E D F V L D R S K I R Q T M N E S S T S L R . : . . . . . 60676 TTACCAGAG : GGTATTTGGGAAAATCAAAATAACTTATACAAGAACAAACCATGGAAGAGC L P E : G I W E N Q N N L Y K N K P W K S Y Q R : V F G K I K I T Y T R T N H G R A I T R : G Y L G K S K - L I Q E Q T M E E . . . . . . 60817 TGAAATCAAAGAAAAAAAACGACCCTATGGCAGTTCAATAAGTTATTAAAAATGCCAAAG - N Q R K K T T L W Q F N K L L K M P K E I K E K K R P Y G S S I S Y - K C Q S L K S K K K N D P M A V Q - V I K N A K . . . . . . 60877 CTAGAGGCATTAAAATTGTACAAGGTACAAGAAAGAGGAAAGTTGTACTATTTGAATCAG L E A L K L Y K V Q E R G K L Y Y L N Q - R H - N C T R Y K K E E S C T I - I R A R G I K I V Q G T R K R K V V L F E S . . . . . . 60937 AGGAAAATGATTGTGAAGTCGGATCTGAAGAACTTCATAATCATGAGGTAGTGTCTTAAA R K M I V K S D L K N F I I M R - C L K G K - L - S R I - R T S - S - G S V L K E E N D C E V G S E E L H N H E V V S - . . . . . . 60997 ACACAAATTTAGATACAATTTTTTTGTTAATTAGTTGTCAATATACAAAAACCATTAAAT T Q I - I Q F F C - L V V N I Q K P L N H K F R Y N F F V N - L S I Y K N H - I N T N L D T I F L L I S C Q Y T K T I K . . . . . . 61057 TAAGTATTGTATATAGTATGTTCCATGTGAGTAATTGTATATAGTATATTGCATATTTAT - V L Y I V C S M - V I V Y S I L H I Y K Y C I - Y V P C E - L Y I V Y C I F M L S I V Y S M F H V S N C I - Y I A Y L . . . 61117 GTTATTTTTTGTTTTTGTATATATAT V I F C F C I Y L F F V F V Y I C Y F L F L Y I Y Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (+ strand): 63542 67714 AGS-1 (63542 64395,64498 65114,65549 65927) SCR (e 0.876 d 0.999 a 0.999,e 0.874 d 0.821 a 0.999,e 0.982) Exon 1 63542 64395 ( 854 n); score: 0.876 Intron 1 64396 64497 ( 102 n); Pd: 0.999 Pa: 0.999 Exon 2 64498 65114 ( 617 n); score: 0.874 Intron 2 65115 65548 ( 434 n); Pd: 0.821 Pa: 0.999 Exon 3 65549 65927 ( 379 n); score: 0.982 PGS (63542 64263) SGN-E553649+ PGS (63551 64228) SGN-E554337+ PGS (63618 64103) SGN-E318770+ PGS (63961 64395,64498 64784) SGN-E378935+ PGS (63961 64395,64498 64600) SGN-E206806+ PGS (63992 64395,64498 64565) SGN-E205363+ PGS (64352 64395,64498 65114) SGN-E378974- PGS (64814 65067) SGN-E234103- PGS (64817 65067) SGN-E234174- PGS (64820 65114,65549 65927) SGN-E320419+ PGS (64882 65114) SGN-E243190+ 3-phase translation of AGS-1 (+strand): . . . . . . 63542 TTTTCTCCTGTCTTTTAGCTTTGCTTTGGTGTTTCATCAGCAACTCAAACAAGGGGCTGC F S P V F - L C F G V S S A T Q T R G C F L L S F S F A L V F H Q Q L K Q G A A F S C L L A L L W C F I S N S N K G L . . . . . . 63602 CACCAGGGCCTAAAGCTTTGCCCTTGATAGGTAATCTCCATTCTCTTGAACCTCAACTTC H Q G L K L C P - - V I S I L L N L N F T R A - S F A L D R - S P F S - T S T S P P G P K A L P L I G N L H S L E P Q L . . . . . . 63662 ACACCTATTTCGCATCTCTTTCCAAAATTTATGGCCCCATTTGTAGAATCTGGCTTGGTA T P I S H L F P K F M A P F V E S G L V H L F R I S F Q N L W P H L - N L A W - H T Y F A S L S K I Y G P I C R I W L G . . . . . . 63722 AAAAACTTGGGATTATTGTTACTTCCCCTGCCTTAGCTCGCGAGGTTCTTAAGGATAAAG K N L G L L L L P L P - L A R F L R I K K T W D Y C Y F P C L S S R G S - G - R K K L G I I V T S P A L A R E V L K D K . . . . . . 63782 ATACCATTTTTGCTAACAGAGATGTGAGTGTTGCTGGTAGAGAAGTTACATATGGTGGAA I P F L L T E M - V L L V E K L H M V E Y H F C - Q R C E C C W - R S Y I W W N D T I F A N R D V S V A G R E V T Y G G . . . . . . 63842 CTGACATAGTTTGGACTCCTTATGGACCTAAGTGGCGTATGTTGAGGAAGGTTTGTGTTC L T - F G L L M D L S G V C - G R F V F - H S L D S L W T - V A Y V E E G L C S T D I V W T P Y G P K W R M L R K V C V . . . . . . 63902 AAGAAATGCTTAGTGCTTCTACTTTAGATTCTCTTTATGCACTGAGGCGAAGGGAGCTTA K K C L V L L L - I L F M H - G E G S L R N A - C F Y F R F S L C T E A K G A - Q E M L S A S T L D S L Y A L R R R E L . . . . . . 63962 GACAATCGATTAATTACTTTTATAATCAGACAGGATCGCCTGTGAATGTTGGTGAACAGA D N R L I T F I I R Q D R L - M L V N R T I D - L L L - S D R I A C E C W - T D R Q S I N Y F Y N Q T G S P V N V G E Q . . . . . . 64022 TGTTTTTGACTGCACTTAATGTGATTACAAGCATGTTATGGGGTGGCACAGTGAAGGGTG C F - L H L M - L Q A C Y G V A Q - R V V F D C T - C D Y K H V M G W H S E G - M F L T A L N V I T S M L W G G T V K G . . . . . . 64082 AGGAAAGAGCTACTCTTGGGGCAGAGGTTAGGGATGTTGTGACTAAGATGAATGAGCTGT R K E L L L G Q R L G M L - L R - M S C G K S Y S W G R G - G C C D - D E - A V E E R A T L G A E V R D V V T K M N E L . . . . . . 64142 TAGTTACTCCAAATCTTTCCGATTTTTACCCGGGGTTGGCCTGGTTTGATTTGCAGGGTG - L L Q I F P I F T R G W P G L I C R V S Y S K S F R F L P G V G L V - F A G C L V T P N L S D F Y P G L A W F D L Q G . . . . . . 64202 TTAAAAAGAAGATGAAAGTGTTGGCAAAGAGATATGATAACATATTTGAGAGCATGATTG L K R R - K C W Q R D M I T Y L R A - L - K E D E S V G K E I - - H I - E H D - V K K K M K V L A K R Y D N I F E S M I . . . . . . 64262 ATCAAAGACAAAAAATGAATAGAAATGGGGTTGGCCAAGAAAGCAAGGACTTTTTGCAAG I K D K K - I E M G L A K K A R T F C K S K T K N E - K W G W P R K Q G L F A S D Q R Q K M N R N G V G Q E S K D F L Q . . . . . . 64322 TTTTGCTGAAGTTGAAAGATGAAGCAGATCCCAAAATGCCTCTGACCATGACTGAACTCA F C - S - K M K Q I P K C L - P - L N S F A E V E R - S R S Q N A S D H D - T Q V L L K L K D E A D P K M P L T M T E L . . : . . . . 64382 AAGCCTTACTTACG : GATATGGTTGTTGGTGGAACTGAAACTAGTGCCAACACAGTTGAGT K P Y L R : I W L L V E L K L V P T Q L S S L T Y : G Y G C W W N - N - C Q H S - V K A L L T : D M V V G G T E T S A N T V E . . . . . . 64544 TTGCCATGACTGAAATTATGAACAAACCAGACGTCTTGAGGAAATTACAACAAGAAGTGG L P - L K L - T N Q T S - G N Y N K K W C H D - N Y E Q T R R L E E I T T R S G F A M T E I M N K P D V L R K L Q Q E V . . . . . . 64604 ATACAGTTGTGGGAAAAGATAACATAGTGGAAGAGTCTCATATACAACACTTGCCGTATT I Q L W E K I T - W K S L I Y N T C R I Y S C G K R - H S G R V S Y T T L A V F D T V V G K D N I V E E S H I Q H L P Y . . . . . . 64664 TGTATGCAGTTATGAAAGAAGTCTTGCGTCTATATCCAGCTGTCCCACTCTTGGTGCCTC C M Q L - K K S C V Y I Q L S H S W C L V C S Y E R S L A S I S S C P T L G A S L Y A V M K E V L R L Y P A V P L L V P . . . . . . 64724 ATTGTCCTAGTGAGACAGTCACTGTTGGAGGATATGCTGTTCCTAAAGGATCTAGTGTTT I V L V R Q S L L E D M L F L K D L V F L S - - D S H C W R I C C S - R I - C F H C P S E T V T V G G Y A V P K G S S V . . . . . . 64784 TCGTAAACGTATGGGCTATACATCGAGATCCTTCTATTTGGGAAAATCCAACTGAGTTCC S - T Y G L Y I E I L L F G K I Q L S S R K R M G Y T S R S F Y L G K S N - V P F V N V W A I H R D P S I W E N P T E F . . . . . . 64844 ATCCGGAAAGATTTATGGAGAATAAATGGGACTTCAGTGGAAATGATTTGACCTACTTCC I R K D L W R I N G T S V E M I - P T S S G K I Y G E - M G L Q W K - F D L L P H P E R F M E N K W D F S G N D L T Y F . . . . . . 64904 CGTTTGGTTCTGGCAGAAGAATCTGTGTGGGGTTAGCCATGGCAGAGAGGATGTTCATGT R L V L A E E S V W G - P W Q R G C S C V W F W Q K N L C G V S H G R E D V H V P F G S G R R I C V G L A M A E R M F M . . . . . . 64964 ATTCACTGGCTTCACTTATTCATTCTTTTGACTGGAAATTGCCTGAAGGAGAGACATTAG I H W L H L F I L L T G N C L K E R H - F T G F T Y S F F - L E I A - R R D I R Y S L A S L I H S F D W K L P E G E T L . . . . . . 65024 ACTTTACAGAGAAGTTTGTGCTCGTTCTGAAGAAGAAAATGCCTCTGGTGGCTATACCTA T L Q R S L C S F - R R K C L W W L Y L L Y R E V C A R S E E E N A S G G Y T Y D F T E K F V L V L K K K M P L V A I P . . . . : . . 65084 CTCCAAGATTATCCAATCCAACACTCTATGA : GACAGACAAGGTATCAAAAAGTGAAGATT L Q D Y P I Q H S M : R Q T R Y Q K V K I S K I I Q S N T L - : D R Q G I K K - R F T P R L S N P T L Y E : T D K V S K S E D . . . . . . 65578 CATTTGTGTTAAACAACAAGGGGCCATTGACTTCATCACTAAATATAAATGTTGAAGTGG H L C - T T R G H - L H H - I - M L K W I C V K Q Q G A I D F I T K Y K C - S G S F V L N N K G P L T S S L N I N V E V . . . . . . 65638 AAAATGGCTTCCCACCACACTGTTTCTGCCATTTCTCTCATTTTTCTCTTAGGCTGATAT K M A S H H T V S A I S L I F L L G - Y K W L P T T L F L P F L S F F S - A D I E N G F P P H C F C H F S H F S L R L I . . . . . . 65698 AATGTCACTAAAATTCTTCAAACCTTTGTGTGATTCTTTCCCATGGCCCTGGCAAGAACA N V T K I L Q T F V - F F P M A L A R T M S L K F F K P L C D S F P W P W Q E Q - C H - N S S N L C V I L S H G P G K N . . . . . . 65758 AAATATTGAGAAAAGTGGTGTATTTTTCTCCTATGTTCTTGGCAGTTTAGCTTTAATATG K Y - E K W C I F L L C S W Q F S F N M N I E K S G V F F S Y V L G S L A L I W K I L R K V V Y F S P M F L A V - L - Y . . . . . . 65818 GTTTCTTTGTTTTTACATCAACAAGTCAAAAAAGGGACAACCGCCATTATGGGCCTAAAG V S L F L H Q Q V K K G T T A I M G L K F L C F Y I N K S K K G Q P P L W A - S G F F V F T S T S Q K R D N R H Y G P K . . . . . 65878 CTTTGCCTTTGCTAGGTAATCTCCACTCTCTTGATCCCCAACTTCACACC L C L C - V I S T L L I P N F T F A F A R - S P L S - S P T S H A L P L L G N L H S L D P Q L H T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-12_AGS-1_PPS_1 (63544 64395,64498 65114,65549 65699) (frame '0'; 1617 bp, 539 residues) 1 FSCLLALLWC FISNSNKGLP PGPKALPLIG NLHSLEPQLH TYFASLSKIY GPICRIWLGK 61 KLGIIVTSPA LAREVLKDKD TIFANRDVSV AGREVTYGGT DIVWTPYGPK WRMLRKVCVQ 121 EMLSASTLDS LYALRRRELR QSINYFYNQT GSPVNVGEQM FLTALNVITS MLWGGTVKGE 181 ERATLGAEVR DVVTKMNELL VTPNLSDFYP GLAWFDLQGV KKKMKVLAKR YDNIFESMID 241 QRQKMNRNGV GQESKDFLQV LLKLKDEADP KMPLTMTELK ALLTDMVVGG TETSANTVEF 301 AMTEIMNKPD VLRKLQQEVD TVVGKDNIVE ESHIQHLPYL YAVMKEVLRL YPAVPLLVPH 361 CPSETVTVGG YAVPKGSSVF VNVWAIHRDP SIWENPTEFH PERFMENKWD FSGNDLTYFP 421 FGSGRRICVG LAMAERMFMY SLASLIHSFD WKLPEGETLD FTEKFVLVLK KKMPLVAIPT 481 PRLSNPTLYE TDKVSKSEDS FVLNNKGPLT SSLNINVEVE NGFPPHCFCH FSHFSLRLI- AGS-2 (66179 66618,67038 67714) SCR (e 0.816 d 0.996 a 0.997,e 0.868) Exon 1 66179 66618 ( 440 n); score: 0.816 Intron 1 66619 67037 ( 419 n); Pd: 0.996 Pa: 0.997 Exon 2 67038 67714 ( 677 n); score: 0.868 PGS (66179 66618,67038 67328) SGN-E378935+ PGS (66179 66618,67038 67139) SGN-E206806+ PGS (66207 66618,67038 67105) SGN-E205363+ PGS (67160 67714) SGN-E551573+ PGS (67358 67604) SGN-E234103- PGS (67361 67604) SGN-E234174- PGS (67426 67660) SGN-E243190+ 3-phase translation of AGS-2 (+strand): . . . . . . 66179 ATCGATCAATTACTTTTATAATCAGGCGGGATCGCCTGTGAATATTGGTGAACAGATGTT I D Q L L L - S G G I A C E Y W - T D V S I N Y F Y N Q A G S P V N I G E Q M F R S I T F I I R R D R L - I L V N R C . . . . . . 66239 CTTGACTGCGCTTAATGTGATAACAAGCATGTTATGGGGTGGGACAGTGAAGGGTGAGGA L D C A - C D N K H V M G W D S E G - G L T A L N V I T S M L W G G T V K G E E S - L R L M - - Q A C Y G V G Q - R V R . . . . . . 66299 AAGCTCTAGACTTGGAGCAGCATGTTGTAGCTGATATGACTGAGCTGTTAGGTACTCCAA K L - T W S S M L - L I - L S C - V L Q S S R L G A A C C S - Y D - A V R Y S K K A L D L E Q H V V A D M T E L L G T P . . . . . . 66359 ATATTTCCGATTTTTATCCGGGCTTGGCCAGGTTCAATTTGAAGGGTGTAACAAAGAAGA I F P I F I R A W P G S I - R V - Q R R Y F R F L S G L G Q V Q F E G C N K E D N I S D F Y P G L A R F N L K G V T K K . . . . . . 66419 TGAATGTATTGGAAAAGAGATATGATAAGATATTTGAGAGCATGATTGATCAAAGACAGA - M Y W K R D M I R Y L R A - L I K D R E C I G K E I - - D I - E H D - S K T E M N V L E K R Y D K I F E S M I D Q R Q . . . . . . 66479 AAATGGATTGAATTGCTGATCAGATGGGAACTGGTGTTGGCCAAGAAAGCAAGGAATTTT K W I E L L I R W E L V L A K K A R N F N G L N C - S D G N W C W P R K Q G I F K M D - I A D Q M G T G V G Q E S K E F . . . . . . 66539 TGCAAGTTTTGCTGAAGTTAAAAGATGAATCAGATGCCAAAATGCCTCTGACCATGATTG C K F C - S - K M N Q M P K C L - P - L A S F A E V K R - I R C Q N A S D H D - L Q V L L K L K D E S D A K M P L T M I . . : . . . . 66599 AAATCAAAGCCTTACTTATG : GATATGGTGGTTGGTGGAACTGACACAACCTCCAACGCGG K S K P Y L W : I W W L V E L T Q P P T R N Q S L T Y : G Y G G W W N - H N L Q R G E I K A L L M : D M V V G G T D T T S N A . . . . . . 67078 TTTAGTTTGCCATGGCTAAAATTATGAACAAACCATACGTCCTGAGGAAGTTACAACAAG F S L P W L K L - T N H T S - G S Y N K L V C H G - N Y E Q T I R P E E V T T R V - F A M A K I M N K P Y V L R K L Q Q . . . . . . 67138 AACTAGAGGTAGTTGTGGGAAAAGATAATATTGTGAAAGAGTCTCATATTCAGCAATTAC N - R - L W E K I I L - K S L I F S N Y T R G S C G K R - Y C E R V S Y S A I T E L E V V V G K D N I V K E S H I Q Q L . . . . . . 67198 CATATAGATCTTTATGCAGTTGTGAAAGAAGCCTTGCGTTTACATCCAACTCTTCCACTC H I D L Y A V V K E A L R L H P T L P L I - I F M Q L - K K P C V Y I Q L F H S P Y R S L C S C E R S L A F T S N S S T . . . . . . 67258 TTGGTGCCACATTGTCCTAGTGAGACATGTACTGTAGGAGGATACACTGTTCCTAATGGA L V P H C P S E T C T V G G Y T V P N G W C H I V L V R H V L - E D T L F L M D L G A T L S - - D M Y C R R I H C S - W . . . . . . 67318 TCTCGTGTTTTCGTAAATGTATGGGCTATACAGAGAGATCCTTCTATCTGGAAAAATCCA S R V F V N V W A I Q R D P S I W K N P L V F S - M Y G L Y R E I L L S G K I Q I S C F R K C M G Y T E R S F Y L E K S . . . . . . 67378 AGAGAGTTCTGTCCAGAGAGATTTTTCGACAATAAATGGGATGATAATGGAAATGATGTC R E F C P E R F F D N K W D D N G N D V E S S V Q R D F S T I N G M I M E M M S K R V L S R E I F R Q - M G - - W K - C . . . . . . 67438 AACTACTTCCCATTTGGCTCTGGCAGGAGAATCTGCGCGGGGATAGTCATGGCAGAGAGG N Y F P F G S G R R I C A G I V M A E R T T S H L A L A G E S A R G - S W Q R G Q L L P I W L W Q E N L R G D S H G R E . . . . . . 67498 ATTTTCATGTATTCACTGGCTTCACTCATTCATTCTTTCGACTGGAAATTGCCCGAAGGA I F M Y S L A S L I H S F D W K L P E G F S C I H W L H S F I L S T G N C P K E D F H V F T G F T H S F F R L E I A R R . . . . . . 67558 GAGACATTAGACCTTACAGAGAAGTTTGGGATTGTTCTGAAGAAAAAAGTACCTCTGGTG E T L D L T E K F G I V L K K K V P L V R H - T L Q R S L G L F - R K K Y L W W R D I R P Y R E V W D C S E E K S T S G . . . . . . 67618 GCTATACCTACTCCCAAGATTTTTCAATCCGAACACTGTATGAGTAAGATAAATATGTGT A I P T P K I F Q S E H C M S K I N M C L Y L L P R F F N P N T V - V R - I C V G Y T Y S Q D F S I R T L Y E - D K Y V . . . . 67678 CTGTAAAGAATCGTGTTCTGTATGATGATTCTGTCTT L - R I V F C M M I L S C K E S C S V - - F C L S V K N R V L Y D D S V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-12_AGS-2_PPS_1 (67174 67683) (frame '1'; 507 bp, 169 residues) 1 KSLIFSNYHI DLYAVVKEAL RLHPTLPLLV PHCPSETCTV GGYTVPNGSR VFVNVWAIQR 61 DPSIWKNPRE FCPERFFDNK WDDNGNDVNY FPFGSGRRIC AGIVMAERIF MYSLASLIHS 121 FDWKLPEGET LDLTEKFGIV LKKKVPLVAI PTPKIFQSEH CMSKINMCL- >C08HBa0060C12.1+_PGL-12_AGS-2_PPS_2 (66289 66489) (frame '0'; 198 bp, 66 residues) 1 RVRKALDLEQ HVVADMTELL GTPNISDFYP GLARFNLKGV TKKMNVLEKR YDKIFESMID 61 QRQKMD- PGL 13 (+ strand): 68295 71308 AGS-1 (68295 68765) SCR (e 0.897) Exon 1 68295 68765 ( 471 n); score: 0.897 PGS (68295 68765) SGN-E379112+ PGS (68295 68765) SGN-E394609- PGS (68295 68634) SGN-E394141+ PGS (68295 68587) SGN-E392605+ PGS (68296 68764) SGN-E379618- PGS (68299 68765) SGN-E393065- PGS (68319 68764) SGN-E200845- PGS (68443 68765) SGN-E393076- PGS (68475 68765) SGN-E393075- PGS (68615 68765) SGN-E392727- 3-phase translation of AGS-1 (+strand): . . . . . . 68295 GGGAAAATTGTATATAATAGCAAACTAATAATCTAAATTAAATAGAATAGCTAGGGTTTG G K I V Y N S K L I I - I K - N S - G L G K L Y I I A N - - S K L N R I A R V - E N C I - - Q T N N L N - I E - L G F . . . . . . 68355 ATTTAATTGTGCTCCATAGCAAACATTGGCAAAAATTTGCCAGGCGTCTCTCTCCCAGAA I - L C S I A N I G K N L P G V S L P E F N C A P - Q T L A K I C Q A S L S Q K D L I V L H S K H W Q K F A R R L S P R . . . . . . 68415 GTCTCGCTCGCCACTCTCTCATTCTCGCCTCTCTCGCTTTATACACAGAAGTGTATAATT V S L A T L S F S P L S L Y T Q K C I I S R S P L S H S R L S R F I H R S V - F S L A R H S L I L A S L A L Y T E V Y N . . . . . . 68475 TCTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATAT S V S V L Y K A R E N C I Y T C K N V Y L F L F C I K R E K I V Y T H A K M Y I F C F C F V - S E R K L Y I H M Q K C I . . . . . . 68535 CTTTGTGTTATACGCTTAATTATATAATTTACAAACATTTTACTTCAAATATTGCAGAGA L C V I R L I I - F T N I L L Q I L Q R F V L Y A - L Y N L Q T F Y F K Y C R E S L C Y T L N Y I I Y K H F T S N I A E . . . . . . 68595 AAAATGCCAAAGAATTATACAATTGTGAATTATATAATTGCAGTGAAATACAGTTTTTTC K M P K N Y T I V N Y I I A V K Y S F F K C Q R I I Q L - I I - L Q - N T V F S K N A K E L Y N C E L Y N C S E I Q F F . . . . . . 68655 TAGCTTTATACAACAGAAGTGTATATCTTGTGTTTCTGTTTTTGTATAAAGCGAGAAAAA - L Y T T E V Y I L C F C F C I K R E K S F I Q Q K C I S C V S V F V - S E K N L A L Y N R S V Y L V F L F L Y K A R K . . . . . . 68715 CATATATCTTCTTGCTATACACTTATAATTATGCAATATACATACATTTTA H I S S C Y T L I I M Q Y T Y I L I Y L L A I H L - L C N I H T F T Y I F L L Y T Y N Y A I Y I H F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-13_AGS-1_PPS_1 (68495 68764) (frame '0'; 270 bp, 90 residues) 1 SERKLYIHMQ KCISLCYTLN YIIYKHFTSN IAEKNAKELY NCELYNCSEI QFFLALYNRS 61 VYLVFLFLYK ARKTYIFLLY TYNYAIYIHF 3-phase translation of AGS-1 (-strand): . . . . . . 68765 TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCG - N V C I L H N Y K C I A R R Y M F F S K M Y V Y C I I I S V - Q E D I C F S R K C M Y I A - L - V Y S K K I Y V F L . . . . . . 68705 CTTTATACAAAAACAGAAACACAAGATATACACTTCTGTTGTATAAAGCTAGAAAAAACT L Y T K T E T Q D I H F C C I K L E K T F I Q K Q K H K I Y T S V V - S - K K L A L Y K N R N T R Y T L L L Y K A R K N . . . . . . 68645 GTATTTCACTGCAATTATATAATTCACAATTGTATAATTCTTTGGCATTTTTCTCTGCAA V F H C N Y I I H N C I I L W H F S L Q Y F T A I I - F T I V - F F G I F L C N C I S L Q L Y N S Q L Y N S L A F F S A . . . . . . 68585 TATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGCGTATAACACAAAGATATACATT Y L K - N V C K L Y N - A Y N T K I Y I I - S K M F V N Y I I K R I T Q R Y T F I F E V K C L - I I - L S V - H K D I H . . . . . . 68525 TTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACA F A C V Y T I F S R F I Q N R N R N Y T L H V Y I Q F S L A L Y K T E T E I I H F C M C I Y N F L S L Y T K Q K Q K L Y . . . . . . 68465 CTTCTGTGTATAAAGCGAGAGAGGCGAGAATGAGAGAGTGGCGAGCGAGACTTCTGGGAG L L C I K R E R R E - E S G E R D F W E F C V - S E R G E N E R V A S E T S G R T S V Y K A R E A R M R E W R A R L L G . . . . . . 68405 AGAGACGCCTGGCAAATTTTTGCCAATGTTTGCTATGGAGCACAATTAAATCAAACCCTA R D A W Q I F A N V C Y G A Q L N Q T L E T P G K F L P M F A M E H N - I K P - E R R L A N F C Q C L L W S T I K S N P . . . . . . 68345 GCTATTCTATTTAATTTAGATTATTAGTTTGCTATTATATACAATTTTCCC A I L F N L D Y - F A I I Y N F P L F Y L I - I I S L L L Y T I F S Y S I - F R L L V C Y Y I Q F S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-13_AGS-1_PPS_1 (68541 68332) (frame '0'; 207 bp, 69 residues) 1 HKDIHFCMCI YNFLSLYTKQ KQKLYTSVYK AREARMREWR ARLLGERRLA NFCQCLLWST 61 IKSNPSYSI- AGS-2 (68571 68630,68783 68836,68867 69009) SCR (e 0.783 d 0.000 a 0.000,e 0.926 d 0.864 a 0.000,e 0.745) Exon 1 68571 68630 ( 60 n); score: 0.783 Intron 1 68631 68782 ( 152 n); Pd: 0.000 Pa: 0.000 Exon 2 68783 68836 ( 54 n); score: 0.926 Intron 2 68837 68866 ( 30 n); Pd: 0.864 Pa: 0.000 Exon 3 68867 69009 ( 143 n); score: 0.745 PGS (68571 68630,68783 68836,68867 69009) SGN-E578389+ 3-phase translation of AGS-2 (+strand): . . . . . . : 68571 ATTTTACTTCAAATATTGCAGAGAAAAATGCCAAAGAATTATACAATTGTGAATTATATA : I L L Q I L Q R K M P K N Y T I V N Y I : F Y F K Y C R E K C Q R I I Q L - I I - : F T S N I A E K N A K E L Y N C E L Y : . . . . . . : 68783 GCAAAGCTAATTATACAATTGCAGGGAAATAGGCCAGCGAATTATACAATTTAG : GCGAAT A K L I I Q L Q G N R P A N Y T I - : A N Q S - L Y N C R E I G Q R I I Q F R : R I S K A N Y T I A G K - A S E L Y N L : G E . . . . . . 68873 TATACAGTTTTTATGTTTGCTATGGAGCGCAATTATGCAAAGTTTGCTATAGCATACAAC Y T V F M F A M E R N Y A K F A I A Y N I Q F L C L L W S A I M Q S L L - H T T L Y S F Y V C Y G A Q L C K V C Y S I Q . . . . . . 68933 TATGAATTTTTTGTTTGCTATATGTGAAAGTTGCCCAAAATTGAATGATGAACAAAATGC Y E F F V C Y M - K L P K I E - - T K C M N F L F A I C E S C P K L N D E Q N A L - I F C L L Y V K V A Q N - M M N K M . . 68993 CAAATTTGGTCCGTTCC Q I W S V K F G P F P N L V R S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (68581 68651,68789 69008) SCR (e 0.746 d 0.000 a 0.673,e 0.861) Exon 1 68581 68651 ( 71 n); score: 0.746 Intron 1 68652 68788 ( 137 n); Pd: 0.000 Pa: 0.673 Exon 2 68789 69008 ( 220 n); score: 0.861 PGS (68581 68651,68789 69008) SGN-E379427+ 3-phase translation of AGS-3 (+strand): . . . . . . 68581 AAATATTGCAGAGAAAAATGCCAAAGAATTATACAATTGTGAATTATATAATTGCAGTGA K Y C R E K C Q R I I Q L - I I - L Q - N I A E K N A K E L Y N C E L Y N C S E I L Q R K M P K N Y T I V N Y I I A V . . : . . . . 68641 AATACAGTTTT : CTAATTATACAATTGCAGGGAAATAGGCCAGCGAATTATACAATTTAGG N T V F : - L Y N C R E I G Q R I I Q F R I Q F : S N Y T I A G K - A S E L Y N L G K Y S F : L I I Q L Q G N R P A N Y T I - . . . . . . 68838 CCAGCGAATTATACACTTGTATATGTATAGCGAATTATACAGTTTTTATGTTTGCTATGG P A N Y T L V Y V - R I I Q F L C L L W Q R I I H L Y M Y S E L Y S F Y V C Y G A S E L Y T C I C I A N Y T V F M F A M . . . . . . 68898 AGCGCAATTATGCAAAGTTTGCTATAGCATACAACTATGAATTTTTTGTTTGCTATATGT S A I M Q S L L - H T T M N F L F A I C A Q L C K V C Y S I Q L - I F C L L Y V E R N Y A K F A I A Y N Y E F F V C Y M . . . . . . 68958 GAAAGTTGCCCAAAATTGAATGATGAACAAAATGCCAAATTTGGTCCGTTC E S C P K L N D E Q N A K F G P F K V A Q N - M M N K M P N L V R - K L P K I E - - T K C Q I W S V Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (68607 68643,68835 68961) SCR (e 0.946 d 0.000 a 0.000,e 0.929) Exon 1 68607 68643 ( 37 n); score: 0.946 Intron 1 68644 68834 ( 191 n); Pd: 0.000 Pa: 0.000 Exon 2 68835 68961 ( 127 n); score: 0.929 PGS (68607 68643,68835 68961) SGN-E371327+ 3-phase translation of AGS-4 (+strand): . . . . : . . 68607 AATTATACAATTGTGAATTATATAATTGCAGTGAAAT : AGGCCAGCGAATTATACACTTGT N Y T I V N Y I I A V K : - A S E L Y T C I I Q L - I I - L Q - N : R P A N Y T L V L Y N C E L Y N C S E I : G Q R I I H L . . . . . . 68858 ATATGTATAGCGAATTATACAGTTTTTATGTTTGCTATGGAGCGCAATTATGCAAAGTTT I C I A N Y T V F M F A M E R N Y A K F Y V - R I I Q F L C L L W S A I M Q S L Y M Y S E L Y S F Y V C Y G A Q L C K V . . . . . 68918 GCTATAGCATACAACTATGAATTTTTTGTTTGCTATATGTGAAA A I A Y N Y E F F V C Y M - L - H T T M N F L F A I C E C Y S I Q L - I F C L L Y V K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (69115 70059,70447 71119,71288 71308) SCR (e 0.931 d 1.000 a 0.951,e 0.835 d 0.000 a 0.000,e 0.857) Exon 1 69115 70059 ( 945 n); score: 0.931 Intron 1 70060 70446 ( 387 n); Pd: 1.000 Pa: 0.951 Exon 2 70447 71119 ( 673 n); score: 0.835 Intron 2 71120 71287 ( 168 n); Pd: 0.000 Pa: 0.000 Exon 3 71288 71308 ( 21 n); score: 0.857 PGS (69115 69927) SGN-E553649+ PGS (69121 69892) SGN-E554337+ PGS (69282 69767) SGN-E318770+ PGS (69625 70059,70447 70733) SGN-E378935+ PGS (69625 70059,70447 70549) SGN-E206806+ PGS (69658 70059,70447 70512) SGN-E205363+ PGS (70016 70059,70447 71130) SGN-E378974- PGS (70571 71119,71288 71308) SGN-E551573+ PGS (70766 71021) SGN-E234174- PGS (70831 71063) SGN-E243190+ 3-phase translation of AGS-5 (+strand): . . . . . . 69115 ATGTCTCTCGAATTCTTCAAACCCCGTTTTGATTCTTTCCCATGGCCTCTTCAACAACTC M S L E F F K P R F D S F P W P L Q Q L C L S N S S N P V L I L S H G L F N N S V S R I L Q T P F - F F P M A S S T T . . . . . . 69175 AATGTTGAGCAAAAGGGTGTGTTTTTCTCCTGTTTTCTTGGGTTTTTAGCTTTGCTTTGG N V E Q K G V F F S C F L G F L A L L W M L S K R V C F S P V F L G F - L C F G Q C - A K G C V F L L F S W V F S F A L . . . . . . 69235 TTTTTTATCAGAAACTCAATCAAGGGATTGCCACCAGGGCCTAAAGCTTTGCCCTTGATA F F I R N S I K G L P P G P K A L P L I F L S E T Q S R D C H Q G L K L C P - - V F Y Q K L N Q G I A T R A - S F A L D . . . . . . 69295 GGTAATCTTCATTCTCTTGATCCTCAACTTCACACCTATTTTGCATCTCTGTCCCAAACT G N L H S L D P Q L H T Y F A S L S Q T V I F I L L I L N F T P I L H L C P K L R - S S F S - S S T S H L F C I S V P N . . . . . . 69355 TATGGCCCCATTTGTAGAATCTGGCTTGGTAAAAAACTTGGAATTATTATTACTTCTCCT Y G P I C R I W L G K K L G I I I T S P M A P F V E S G L V K N L E L L L L L L L W P H L - N L A W - K T W N Y Y Y F S . . . . . . 69415 GCTTTAGCTCGCGAGGTTCTTAAGGATAAAGATACCATTTTTGCTAACAGAGATGTCCCT A L A R E V L K D K D T I F A N R D V P L - L A R F L R I K I P F L L T E M S L C F S S R G S - G - R Y H F C - Q R C P . . . . . . 69475 GCTGCTGGAAGCGAATTTTCATATGGTGGCAAAAACATACTTTGGACTCCTTATGGACCG A A G S E F S Y G G K N I L W T P Y G P L L E A N F H M V A K T Y F G L L M D R C C W K R I F I W W Q K H T L D S L W T . . . . . . 69535 AAATGGCGCATGTTGAGGAAAATTTGTGTTCGCGATATGCTTAGTTCTTCTACTTTAGAT K W R M L R K I C V R D M L S S S T L D N G A C - G K F V F A I C L V L L L - I E M A H V E E N L C S R Y A - F F Y F R . . . . . . 69595 TCGGTGTATGCACTAAGGAGAAGGGAGGTTAGACAATCGATCAATTACTTGTATAGTCAG S V Y A L R R R E V R Q S I N Y L Y S Q R C M H - G E G R L D N R S I T C I V R F G V C T K E K G G - T I D Q L L V - S . . . . . . 69655 AAGGGTTTACCAGTGAATGTTGGTGAACAGACGTTCTTGACTATTCTTAATGTGATTACA K G L P V N V G E Q T F L T I L N V I T R V Y Q - M L V N R R S - L F L M - L Q E G F T S E C W - T D V L D Y S - C D Y . . . . . . 69715 AGCATGTTATGGGGTGGTACAGTGAAGGGTGAGGAAAGAGCTAGTATTGGAGCGGAGTTT S M L W G G T V K G E E R A S I G A E F A C Y G V V Q - R V R K E L V L E R S L K H V M G W Y S E G - G K S - Y W S G V . . . . . . 69775 AGGCATGTTGTGACTGGGATAGCTCAGTTGGTCAGTATTCCCAATCTTTCCGATTTTTAC R H V V T G I A Q L V S I P N L S D F Y G M L - L G - L S W S V F P I F P I F T - A C C D W D S S V G Q Y S Q S F R F L . . . . . . 69835 CCAGGCTTGGCTTGGTTTGATTTCCAGGGTGTTATAAAGAAGATGAAGGTGTTGGCAAAG P G L A W F D F Q G V I K K M K V L A K Q A W L G L I S R V L - R R - R C W Q S P R L G L V - F P G C Y K E D E G V G K . . . . . . 69895 CGATTTGATAAGATATTTGAGAGCATGATTGATCAAAGACAAAAATTGGACAGAAATGGT R F D K I F E S M I D Q R Q K L D R N G D L I R Y L R A - L I K D K N W T E M V A I - - D I - E H D - S K T K I G Q K W . . . . . . 69955 GTTGGCCAAGAAATCAAAGACTTTTTGCAAGTTTTGCTAAAGTTGAAAGATGAAGCAGAT V G Q E I K D F L Q V L L K L K D E A D L A K K S K T F C K F C - S - K M K Q I C W P R N Q R L F A S F A K V E R - S R . . . . . : . 70015 CCCGAAATGCCTCTGACCATGACTGAAATCAAAGCCTTACTTATG : GAAATGGTTCTTGGT P E M P L T M T E I K A L L M : E M V L G P K C L - P - L K S K P Y L W : K W F L V S R N A S D H D - N Q S L T Y : G N G S W . . . . . . 70462 GGAACTGACACTTCCGTCAACACAATTGAGTTTGTCATGGCTGAAATTATGCATAAACCG G T D T S V N T I E F V M A E I M H K P E L T L P S T Q L S L S W L K L C I N R W N - H F R Q H N - V C H G - N Y A - T . . . . . . 70522 GATATCCTGAGGAAATTACAACAAGAAGTAGATACAGTTGTGGGAAAAAATAATATTGTG D I L R K L Q Q E V D T V V G K N N I V I S - G N Y N K K - I Q L W E K I I L W G Y P E E I T T R S R Y S C G K K - Y C . . . . . . 70582 GAAGAGTCTCATATTCAGAAATTACCATATCTCAATGCAGTGATGAAAGAAGTGTTGCGC E E S H I Q K L P Y L N A V M K E V L R K S L I F R N Y H I S M Q - - K K C C A G R V S Y S E I T I S Q C S D E R S V A . . . . . . 70642 CTACATCCAGCTGCTCCACTACTGATACCACATTGTCCTAGTGAAACATGCACTGTGGGA L H P A A P L L I P H C P S E T C T V G Y I Q L L H Y - Y H I V L V K H A L W E P T S S C S T T D T T L S - - N M H C G . . . . . . 70702 GGTTACACTGTTCCTAAAGGATCTTGTATTTTCATAAATGTTTGGGCTATACACAGAGAT G Y T V P K G S C I F I N V W A I H R D V T L F L K D L V F S - M F G L Y T E M R L H C S - R I L Y F H K C L G Y T Q R . . . . . . 70762 GCTTCTATCTGGAAAAATCCAACAGAGTTCCGTCCAGAGAGGTTTTTGGACAATAAATGG A S I W K N P T E F R P E R F L D N K W L L S G K I Q Q S S V Q R G F W T I N G C F Y L E K S N R V P S R E V F G Q - M . . . . . . 70822 GATTATAGCGGAAAAGATTTGAACTATTTCCCATTTGGTTCTGGAAGAAGAATCTGTGCA D Y S G K D L N Y F P F G S G R R I C A I I A E K I - T I S H L V L E E E S V Q G L - R K R F E L F P I W F W K K N L C . . . . . . 70882 GGGATAGGCATGGCAGAGAGGATGTTCATGTATTCACTGGCTTCACTCGTTCATTCTTTT G I G M A E R M F M Y S L A S L V H S F G - A W Q R G C S C I H W L H S F I L L R D R H G R E D V H V F T G F T R S F F . . . . . . 70942 GATTGGAAATTGCCCCAAGGAGTGACATCAGACGTTACAGAGACGTTTGGTCTTAATTTG D W K L P Q G V T S D V T E T F G L N L I G N C P K E - H Q T L Q R R L V L I - - L E I A P R S D I R R Y R D V W S - F . . . . . . 71002 AGGAAAAAAATTCCTCTGGTGGCTATACCTACTCCAAGATTGTCCAATCCAACACTGTAT R K K I P L V A I P T P R L S N P T L Y G K K F L W W L Y L L Q D C P I Q H C M E E K N S S G G Y T Y S K I V Q S N T V . . . . . . : 71062 GAGTAAGATAAAAATGTATCTGTTGAGAGTCGTGTTCCGTATGATGATTCTGTCTTTT : CT E - D K N V S V E S R V P Y D D S V F : S S K I K M Y L L R V V F R M M I L S F : L - V R - K C I C - E S C S V - - F C L F : . . 71290 CGAAACTAAGCATTTTCTT R N - A F S E T K H F L S K L S I F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-13_AGS-5_PPS_1 (69115 70059,70447 71067) (frame '1'; 1563 bp, 521 residues) 1 MSLEFFKPRF DSFPWPLQQL NVEQKGVFFS CFLGFLALLW FFIRNSIKGL PPGPKALPLI 61 GNLHSLDPQL HTYFASLSQT YGPICRIWLG KKLGIIITSP ALAREVLKDK DTIFANRDVP 121 AAGSEFSYGG KNILWTPYGP KWRMLRKICV RDMLSSSTLD SVYALRRREV RQSINYLYSQ 181 KGLPVNVGEQ TFLTILNVIT SMLWGGTVKG EERASIGAEF RHVVTGIAQL VSIPNLSDFY 241 PGLAWFDFQG VIKKMKVLAK RFDKIFESMI DQRQKLDRNG VGQEIKDFLQ VLLKLKDEAD 301 PEMPLTMTEI KALLMEMVLG GTDTSVNTIE FVMAEIMHKP DILRKLQQEV DTVVGKNNIV 361 EESHIQKLPY LNAVMKEVLR LHPAAPLLIP HCPSETCTVG GYTVPKGSCI FINVWAIHRD 421 ASIWKNPTEF RPERFLDNKW DYSGKDLNYF PFGSGRRICA GIGMAERMFM YSLASLVHSF 481 DWKLPQGVTS DVTETFGLNL RKKIPLVAIP TPRLSNPTLY E- PGL 14 (- strand): 73454 73060 AGS-1 (73454 73060) SCR (e 0.771) Exon 1 73454 73060 ( 395 n); score: 0.771 PGS (73397 73060) SGN-E398229+ PGS (73454 73259) SGN-E202132+ 3-phase translation of AGS-1 (-strand): . . . . . . 73454 AGCTTTGTGTCTATGTACTTACATTGTAAATCTGTTCCTAATCTATAAAGGATTCAGATA S F V S M Y L H C K S V P N L - R I Q I A L C L C T Y I V N L F L I Y K G F R Y L C V Y V L T L - I C S - S I K D S D . . . . . . 73394 TTTGTTTTGGGTTTGTAAAAGTCTAAATCAGTTAAGGTTAACTGATTTAGTGGGCAACAT F V L G L - K S K S V K V N - F S G Q H L F W V C K S L N Q L R L T D L V G N I I C F G F V K V - I S - G - L I - W A T . . . . . . 73334 TTGTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGAGTTAGGTGGTTTAGTGGGCGGTGT L F V A - S N S K S S R V R W F S G R C C L L L S Q I L S H L E L G G L V G G V F V C C L V K F - V I - S - V V - W A V . . . . . . 73274 GGTATCCGCTTAGGCTCTTCAAGTAACAGGTAGATTACTTGATCGTGAGATTAATAACTT G I R L G S S S N R - I T - S - D - - L V S A - A L Q V T G R L L D R E I N N F W Y P L R L F K - Q V D Y L I V R L I T . . . . . . 73214 TTTCTCACATTGATTGTAACCGGGTTTCACTTTTGCTTGAGAAGATTAGTGAAGACGGTT F L T L I V T G F H F C L R R L V K T V F S H - L - P G F T F A - E D - - R R L F S H I D C N R V S L L L E K I S E D G . . . . . . 73154 GTAAATCTTGTGCAATAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAA V N L V Q - V V V L L P - A R R F P R K - I L C N R S W F Y S L E Q G G F H V N C K S C A I G R G F T P L S K E V S T - . . . . 73094 CTGCTTGTGTTGTGTTCTTCATATTGTTTAATCTT L L V L C S S Y C L I C L C C V L H I V - S T A C V V F F I L F N L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 73060 AAGATTAAACAATATGAAGAACACAACACAAGCAGTTTACGTGGAAACCTCCTTGCTCAA K I K Q Y E E H N T S S L R G N L L A Q R L N N M K N T T Q A V Y V E T S L L K D - T I - R T Q H K Q F T W K P P C S . . . . . . 73120 GGGAGTAAAACCACGACCTATTGCACAAGATTTACAACCGTCTTCACTAATCTTCTCAAG G S K T T T Y C T R F T T V F T N L L K G V K P R P I A Q D L Q P S S L I F S S R E - N H D L L H K I Y N R L H - S S Q . . . . . . 73180 CAAAAGTGAAACCCGGTTACAATCAATGTGAGAAAAAGTTATTAATCTCACGATCAAGTA Q K - N P V T I N V R K S Y - S H D Q V K S E T R L Q S M - E K V I N L T I K - A K V K P G Y N Q C E K K L L I S R S S . . . . . . 73240 ATCTACCTGTTACTTGAAGAGCCTAAGCGGATACCACACCGCCCACTAAACCACCTAACT I Y L L L E E P K R I P H R P L N H L T S T C Y L K S L S G Y H T A H - T T - L N L P V T - R A - A D T T P P T K P P N . . . . . . 73300 CTAGATGACTTAGAATTTGACTAAGCAACAAACAAATGTTGCCCACTAAATCAGTTAACC L D D L E F D - A T N K C C P L N Q L T - M T - N L T K Q Q T N V A H - I S - P S R - L R I - L S N K Q M L P T K S V N . . . . . . 73360 TTAACTGATTTAGACTTTTACAAACCCAAAACAAATATCTGAATCCTTTATAGATTAGGA L T D L D F Y K P K T N I - I L Y R L G - L I - T F T N P K Q I S E S F I D - E L N - F R L L Q T Q N K Y L N P L - I R . . . . 73420 ACAGATTTACAATGTAAGTACATAGACACAAAGCT T D L Q C K Y I D T K Q I Y N V S T - T Q S N R F T M - V H R H K A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 73844 74187 AGS-1 (73844 74187) SCR (e 0.814) Exon 1 73844 74187 ( 344 n); score: 0.814 PGS (73844 74187) SGN-E544532+ PGS (73848 74187) SGN-E307594+ 3-phase translation of AGS-1 (+strand): . . . . . . 73844 AATATAATATGGTGTTTGTCATGCTAAAAGTATCAAATATAAAGAGTTATTATCCATTGG N I I W C L S C - K Y Q I - R V I I H W I - Y G V C H A K S I K Y K E L L S I G Y N M V F V M L K V S N I K S Y Y P L . . . . . . 73904 ACAAACACCCTCCTCCATTCTGATTGGTGTAGTACACTGACATCTTACTAACCTCTGACG T N T L L H S D W C S T L T S Y - P L T Q T P S S I L I G V V H - H L T N L - R D K H P P P F - L V - Y T D I L L T S D . . . . . . 73964 TGACAACTTTACAGCTGTAACCAATTATGTATCTGATGGAGGAAACTCTGCCTGGTACTA - Q L Y S C N Q L C I - W R K L C L V L D N F T A V T N Y V S D G G N S A W Y - V T T L Q L - P I M Y L M E E T L P G T . . . . . . 74024 GGTCCCTGCATTTGTGAGATTCTGAAACATACAATCTTGTCCGCTCTTCTTATTGGTGTA G P C I C E I L K H T I L S A L L I G V V P A F V R F - N I Q S C P L F L L V - R S L H L - D S E T Y N L V R S S Y W C . . . . . . 74084 GGATACTGCACTTTTCACCTACCACCTAACATATCAACTTTTATGACTGTACCCCATTTG G Y C T F H L P P N I S T F M T V P H L D T A L F T Y H L T Y Q L L - L Y P I C R I L H F S P T T - H I N F Y D C T P F . . . . . 74144 TATCTGGACGAGAGCACTCTGCCAGGAACCAGGTCCCCGCATTT Y L D E S T L P G T R S P H I W T R A L C Q E P G P R I V S G R E H S A R N Q V P A F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 74187 AAATGCGGGGACCTGGTTCCTGGCAGAGTGCTCTCGTCCAGATACAAATGGGGTACAGTC K C G D L V P G R V L S S R Y K W G T V N A G T W F L A E C S R P D T N G V Q S M R G P G S W Q S A L V Q I Q M G Y S . . . . . . 74127 ATAAAAGTTGATATGTTAGGTGGTAGGTGAAAAGTGCAGTATCCTACACCAATAAGAAGA I K V D M L G G R - K V Q Y P T P I R R - K L I C - V V G E K C S I L H Q - E E H K S - Y V R W - V K S A V S Y T N K K . . . . . . 74067 GCGGACAAGATTGTATGTTTCAGAATCTCACAAATGCAGGGACCTAGTACCAGGCAGAGT A D K I V C F R I S Q M Q G P S T R Q S R T R L Y V S E S H K C R D L V P G R V S G Q D C M F Q N L T N A G T - Y Q A E . . . . . . 74007 TTCCTCCATCAGATACATAATTGGTTACAGCTGTAAAGTTGTCACGTCAGAGGTTAGTAA F L H Q I H N W L Q L - S C H V R G - - S S I R Y I I G Y S C K V V T S E V S K F P P S D T - L V T A V K L S R Q R L V . . . . . . 73947 GATGTCAGTGTACTACACCAATCAGAATGGAGGAGGGTGTTTGTCCAATGGATAATAACT D V S V L H Q S E W R R V F V Q W I I T M S V Y Y T N Q N G G G C L S N G - - L R C Q C T T P I R M E E G V C P M D N N . . . . . 73887 CTTTATATTTGATACTTTTAGCATGACAAACACCATATTATATT L Y I - Y F - H D K H H I I F I F D T F S M T N T I L Y S L Y L I L L A - Q T P Y Y I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 16 (+ strand): 75297 88745 AGS-1 (75297 76241,76672 77347) SCR (e 0.931 d 0.999 a 0.993,e 0.889) Exon 1 75297 76241 ( 945 n); score: 0.931 Intron 1 76242 76671 ( 430 n); Pd: 0.999 Pa: 0.993 Exon 2 76672 77347 ( 676 n); score: 0.889 PGS (75297 76109) SGN-E553649+ PGS (75303 76076) SGN-E554337+ PGS (75464 75949) SGN-E318770+ PGS (75807 76241,76672 76958) SGN-E378935+ PGS (75807 76241,76672 76774) SGN-E206806+ PGS (75840 76241,76672 76739) SGN-E205363+ PGS (76195 76241,76672 76884) SGN-E554086+ PGS (76198 76241,76672 77303) SGN-E378974- PGS (76794 77347) SGN-E551573+ PGS (76988 77247) SGN-E234103- PGS (76991 77247) SGN-E234174- PGS (77056 77288) SGN-E243190+ 3-phase translation of AGS-1 (+strand): . . . . . . 75297 ATGTCTCTCAAATTCTTCAAACCCCTTTTTGATTCTTCCCCATGGCTCCTTCAACAACTC M S L K F F K P L F D S S P W L L Q Q L C L S N S S N P F L I L P H G S F N N S V S Q I L Q T P F - F F P M A P S T T . . . . . . 75357 AATGTTGAGGAAAATGCTGTGTTTTTCTCCTGTTTTCTTGGTTTTTCAGCTTTACTTTGG N V E E N A V F F S C F L G F S A L L W M L R K M L C F S P V F L V F Q L Y F G Q C - G K C C V F L L F S W F F S F T L . . . . . . 75417 TATTTCATCAGAAACTCAAACAAGGGATTGCCACCAGGGCCTAAACCTTTGCCCTTGATA Y F I R N S N K G L P P G P K P L P L I I S S E T Q T R D C H Q G L N L C P - - V F H Q K L K Q G I A T R A - T F A L D . . . . . . 75477 GGTAATCTTCATTCTCTTGAACCTCAACTTCATACCTATTTTACATCTCTTTCCCAAACT G N L H S L E P Q L H T Y F T S L S Q T V I F I L L N L N F I P I L H L F P K L R - S S F S - T S T S Y L F Y I S F P N . . . . . . 75537 TATGGTCCTATTTGTAGACTCTGGCTTGGTAAAAAAGTTGGGATTGTTATTGCTTCGCCT Y G P I C R L W L G K K V G I V I A S P M V L F V D S G L V K K L G L L L L R L L W S Y L - T L A W - K S W D C Y C F A . . . . . . 75597 GCTTTAGCTCGCGAGGTTCTTAAGGATAAAGATACCATTTTTGCTAACAGAGATGTCCCT A L A R E V L K D K D T I F A N R D V P L - L A R F L R I K I P F L L T E M S L C F S S R G S - G - R Y H F C - Q R C P . . . . . . 75657 GCTGCTGGAAGAGAATTTTCCTACGGTGTGAATGACTTACTTTGGACTCCTTATGGACCG A A G R E F S Y G V N D L L W T P Y G P L L E E N F P T V - M T Y F G L L M D R C C W K R I F L R C E - L T L D S L W T . . . . . . 75717 AAATGGCGAATGTTGAGGAAGGTTTGTGTTCGTGATATGCTTAGTTGTTCTACATTAGAT K W R M L R K V C V R D M L S C S T L D N G E C - G R F V F V I C L V V L H - I E M A N V E E G L C S - Y A - L F Y I R . . . . . . 75777 TCTGTTTATGCACTAAGGAAAAGGGAGCTTAGACAATCGATCAAATACTTGTATAGTCAG S V Y A L R K R E L R Q S I K Y L Y S Q L F M H - G K G S L D N R S N T C I V R F C L C T K E K G A - T I D Q I L V - S . . . . . . 75837 AAGGGTTTACCGGTGAATGTTGGTGAACAGATGTTCTTGACTGTGCTTAATGTGATTACA K G L P V N V G E Q M F L T V L N V I T R V Y R - M L V N R C S - L C L M - L Q E G F T G E C W - T D V L D C A - C D Y . . . . . . 75897 AGCATGTTATGGGGTGGCACAGTGAAGGGTGAGGAAAGAGCTAGTGTTGGAGCGGAGTTT S M L W G G T V K G E E R A S V G A E F A C Y G V A Q - R V R K E L V L E R S L K H V M G W H S E G - G K S - C W S G V . . . . . . 75957 AGGCATGTTGTGACTGAGATAGCTCAGTTGATCAGTATTCCCAATCTTTCCGATTTTTAC R H V V T E I A Q L I S I P N L S D F Y G M L - L R - L S - S V F P I F P I F T - A C C D - D S S V D Q Y S Q S F R F L . . . . . . 76017 CCAGGCATGGCTTGGTTTGATTTCCAGGGTGTTGTAAAGAAGATGAAGGTGGTTCTTAAG P G M A W F D F Q G V V K K M K V V L K Q A W L G L I S R V L - R R - R W F L R P R H G L V - F P G C C K E D E G G S - . . . . . . 76077 AGATTCGATAAGATATTTGAAAGCATGATTGATCAAAGACAAAAATTGGACAGAAACGGT R F D K I F E S M I D Q R Q K L D R N G D S I R Y L K A - L I K D K N W T E T V E I R - D I - K H D - S K T K I G Q K R . . . . . . 76137 TTTGGCCAAGAAAGCAAAGACTTTCTGCAAGTTTTGCTGAAGTTGAAAGATGAAGCAGAT F G Q E S K D F L Q V L L K L K D E A D L A K K A K T F C K F C - S - K M K Q M F W P R K Q R L S A S F A E V E R - S R . . . . . : . 76197 GCCAAAATGCCACTGACTATGACTGAAATCAAAGCCTTACTTATG : GATATGGTTACCGGT A K M P L T M T E I K A L L M : D M V T G P K C H - L - L K S K P Y L W : I W L P V C Q N A T D Y D - N Q S L T Y : G Y G Y R . . . . . . 76687 GGAGCTAGCTCAACGTCCAACGCGATAGAGTTTGCCATGGCTGAAATTATGAACAGACCA G A S S T S N A I E F A M A E I M N R P E L A Q R P T R - S L P W L K L - T D Q W S - L N V Q R D R V C H G - N Y E Q T . . . . . . 76747 GACGTCTTGAGGAAATTACAAGAAGAAGTAGAAGCAGTTGTGGGAAAAGATAATATTGTG D V L R K L Q E E V E A V V G K D N I V T S - G N Y K K K - K Q L W E K I I L W R R L E E I T R R S R S S C G K R - Y C . . . . . . 76807 GAAGAGTCTCATCTTAAGCAATTACCATATCTCTATGCAGTGATGAAAGAAGCCTTGCGC E E S H L K Q L P Y L Y A V M K E A L R K S L I L S N Y H I S M Q - - K K P C A G R V S S - A I T I S L C S D E R S L A . . . . . . 76867 ATACATCCAACTGCTCCACTATTGGTGCCTCATTGTCCAAGTGAAACATGCACTGTGGGA I H P T A P L L V P H C P S E T C T V G Y I Q L L H Y W C L I V Q V K H A L W E H T S N C S T I G A S L S K - N M H C G . . . . . . 76927 GGATACACTATTCCTAAAGGATCTTGTGTTTTCATAAATGTATGGGCTATACACAGAGAT G Y T I P K G S C V F I N V W A I H R D D T L F L K D L V F S - M Y G L Y T E I R I H Y S - R I L C F H K C M G Y T Q R . . . . . . 76987 CCTTCTATCTGGAAAAATCCAACTGAGTTCCGTCCAGAGAGATTTTTGGACAATAAATGG P S I W K N P T E F R P E R F L D N K W L L S G K I Q L S S V Q R D F W T I N G S F Y L E K S N - V P S R E I F G Q - M . . . . . . 77047 GATTTTAGTGGAAATGATTTCAACTATTTCCCGTTTGGTTCTGGCAGAAGAATCTGTGTG D F S G N D F N Y F P F G S G R R I C V I L V E M I S T I S R L V L A E E S V W G F - W K - F Q L F P V W F W Q K N L C . . . . . . 77107 GGGCTAGACATGGCAGAGAGGATGTTCATGTATTCACTGGCTTCACTCATTCATTCTTTC G L D M A E R M F M Y S L A S L I H S F G - T W Q R G C S C I H W L H S F I L S G A R H G R E D V H V F T G F T H S F F . . . . . . 77167 GACTGGAAATTGCCTGAAGGAGAGACATTAGAAGTTACAGAGAAGTTTGGTATTATTATG D W K L P E G E T L E V T E K F G I I M T G N C L K E R H - K L Q R S L V L L - R L E I A - R R D I R S Y R E V W Y Y Y . . . . . . 77227 AAGAAGAAAATGCCTCTGGTGGCTATACCGACTCCAAGATTGTCCAATCCATCACTCTAT K K K M P L V A I P T P R L S N P S L Y R R K C L W W L Y R L Q D C P I H H S M E E E N A S G G Y T D S K I V Q S I T L . . . . . . 77287 GAGTAAGATAAAAATGTGTCTGTAGAGAGTCGCATTTTGTATGATTATTATTATTATTAT E - D K N V S V E S R I L Y D Y Y Y Y Y S K I K M C L - R V A F C M I I I I I I - V R - K C V C R E S H F V - L L L L L . 77347 T Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-16_AGS-1_PPS_1 (75297 76241,76672 77292) (frame '1'; 1563 bp, 521 residues) 1 MSLKFFKPLF DSSPWLLQQL NVEENAVFFS CFLGFSALLW YFIRNSNKGL PPGPKPLPLI 61 GNLHSLEPQL HTYFTSLSQT YGPICRLWLG KKVGIVIASP ALAREVLKDK DTIFANRDVP 121 AAGREFSYGV NDLLWTPYGP KWRMLRKVCV RDMLSCSTLD SVYALRKREL RQSIKYLYSQ 181 KGLPVNVGEQ MFLTVLNVIT SMLWGGTVKG EERASVGAEF RHVVTEIAQL ISIPNLSDFY 241 PGMAWFDFQG VVKKMKVVLK RFDKIFESMI DQRQKLDRNG FGQESKDFLQ VLLKLKDEAD 301 AKMPLTMTEI KALLMDMVTG GASSTSNAIE FAMAEIMNRP DVLRKLQEEV EAVVGKDNIV 361 EESHLKQLPY LYAVMKEALR IHPTAPLLVP HCPSETCTVG GYTIPKGSCV FINVWAIHRD 421 PSIWKNPTEF RPERFLDNKW DFSGNDFNYF PFGSGRRICV GLDMAERMFM YSLASLIHSF 481 DWKLPEGETL EVTEKFGIIM KKKMPLVAIP TPRLSNPSLY E- AGS-2 (76996 77288,78262 78320,78656 78710,78980 79023,79054 80004,80379 81062) SCR (e 0.911 d 0.973 a 0.864,e 0.508 d 0.853 a 0.000,e 0.564 d 0.000 a 0.000,e 0.591 d 0.000 a 0.000,e 0.875 d 0.999 a 0.997,e 0.997) Exon 1 76996 77288 ( 293 n); score: 0.911 Intron 1 77289 78261 ( 973 n); Pd: 0.973 Pa: 0.864 Exon 2 78262 78320 ( 59 n); score: 0.508 Intron 2 78321 78655 ( 335 n); Pd: 0.853 Pa: 0.000 Exon 3 78656 78710 ( 55 n); score: 0.564 Intron 3 78711 78979 ( 269 n); Pd: 0.000 Pa: 0.000 Exon 4 78980 79023 ( 44 n); score: 0.591 Intron 4 79024 79053 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 5 79054 80004 ( 951 n); score: 0.875 Intron 5 80005 80378 ( 374 n); Pd: 0.999 Pa: 0.997 Exon 6 80379 81062 ( 684 n); score: 0.997 PGS (76996 77288,78262 78320,78656 78710,78980 79023,79054 79174) SGN-E320419+ PGS (79054 79872) SGN-E553649+ PGS (79221 79712) SGN-E318770+ PGS (79570 80004,80379 80665) SGN-E378935+ PGS (79570 80004,80379 80481) SGN-E206806+ PGS (79603 80004,80379 80446) SGN-E205363+ PGS (79961 80004,80379 81062) SGN-E378974- PGS (80695 80953) SGN-E234103- PGS (80698 80953) SGN-E234174- PGS (80763 80995) SGN-E243190+ 3-phase translation of AGS-2 (+strand): . . . . . . 76996 TGGAAAAATCCAACTGAGTTCCGTCCAGAGAGATTTTTGGACAATAAATGGGATTTTAGT W K N P T E F R P E R F L D N K W D F S G K I Q L S S V Q R D F W T I N G I L V E K S N - V P S R E I F G Q - M G F - . . . . . . 77056 GGAAATGATTTCAACTATTTCCCGTTTGGTTCTGGCAGAAGAATCTGTGTGGGGCTAGAC G N D F N Y F P F G S G R R I C V G L D E M I S T I S R L V L A E E S V W G - T W K - F Q L F P V W F W Q K N L C G A R . . . . . . 77116 ATGGCAGAGAGGATGTTCATGTATTCACTGGCTTCACTCATTCATTCTTTCGACTGGAAA M A E R M F M Y S L A S L I H S F D W K W Q R G C S C I H W L H S F I L S T G N H G R E D V H V F T G F T H S F F R L E . . . . . . 77176 TTGCCTGAAGGAGAGACATTAGAAGTTACAGAGAAGTTTGGTATTATTATGAAGAAGAAA L P E G E T L E V T E K F G I I M K K K C L K E R H - K L Q R S L V L L - R R K I A - R R D I R S Y R E V W Y Y Y E E E . . . . . . : 77236 ATGCCTCTGGTGGCTATACCGACTCCAAGATTGTCCAATCCATCACTCTATGA : AACACGA M P L V A I P T P R L S N P S L Y E : T R C L W W L Y R L Q D C P I H H S M : K H E N A S G G Y T D S K I V Q S I T L - : N T . . . . . . : 78269 GTTGTCATGAATATGATATTAATCCATTTGAGATTATGGACGAGAGATGAGA : TAATTTAC V V M N M I L I H L R L W T R D E : I I Y L S - I - Y - S I - D Y G R E M R : - F T S C H E Y D I N P F E I M D E R - D : N L . . . . . : . 78664 AATTTAATAATGAGTATTGAATTGTAAGTCTGGCTAAAAATAAGAGT : GTCTGTTTATATT N L I M S I E L - V W L K I R V : S V Y I I - - - V L N C K S G - K - E : C L F I F Q F N N E Y - I V S L A K N K S : V C L Y . . . . : . . 78993 CATCTCATTCTTTCTGCAAAGTCAAAACAAA : ATGTCTCTCAAATTCTTCAAACCCCTTTT H L I L S A K S K Q : N V S Q I L Q T P F I S F F L Q S Q N K : M S L K F F K P L F S S H S F C K V K T K : C L S N S S N P F . . . . . . 79083 TGATTCTTTTCCATGGCCCCTTCAAGAACTCAATGTTGAGCAAAATGGTGTGTTTTTCTC - F F S M A P S R T Q C - A K W C V F L D S F P W P L Q E L N V E Q N G V F F S L I L F H G P F K N S M L S K M V C F S . . . . . . 79143 CTGTTTTCTTGGGTTCTTAGCTTTACTTTGGTGTTTCATCAGAAACTCAAACAAGGGATT L F S W V L S F T L V F H Q K L K Q G I C F L G F L A L L W C F I R N S N K G L P V F L G S - L Y F G V S S E T Q T R D . . . . . . 79203 GCCACCAGGGCCTAAAGCTTTGCCCTTGATAGGTAATCTCCATTCTCTTGATGCTTCTTC A T R A - S F A L D R - S P F S - C F F P P G P K A L P L I G N L H S L D A S S C H Q G L K L C P - - V I S I L L M L L . . . . . . 79263 AGAAACTCACATCTATTTTGCATCTCTATCACAAACTTATGGCCCCATTTGTAGACTCTG R N S H L F C I S I T N L W P H L - T L E T H I Y F A S L S Q T Y G P I C R L W Q K L T S I L H L Y H K L M A P F V D S . . . . . . 79323 GCTTGGTCTAAAAGTTGGGATTATTATTACTTCCTCTGATTTAGCTCGCGAGGTTCTTAA A W S K S W D Y Y Y F L - F S S R G S - L G L K V G I I I T S S D L A R E V L K G L V - K L G L L L L P L I - L A R F L . . . . . . 79383 GGATAAAGATACCATTTTTGCAAATAGAGAAGTGTCTGCTGCTGGAAGAGAATTCTCATA G - R Y H F C K - R S V C C W K R I L I D K D T I F A N R E V S A A G R E F S Y R I K I P F L Q I E K C L L L E E N S H . . . . . . 79443 TGGTGTAAATGACTTAATTTGGAGTCCTTATGGACTGAAATGGAGAATGTTGAGGAAGGT W C K - L N L E S L W T E M E N V E E G G V N D L I W S P Y G L K W R M L R K V M V - M T - F G V L M D - N G E C - G R . . . . . . 79503 TTGTGTTCGCGATATGCTTAGTTCTTCTAATATAGATTCTGTTTATGCACTAAGGAGAAG L C S R Y A - F F - Y R F C L C T K E K C V R D M L S S S N I D S V Y A L R R R F V F A I C L V L L I - I L F M H - G E . . . . . . 79563 GGAGCTTAGACGATCAATCAATTACTTGTATAGTCAGAGGGGTTTACCAGTGAATGTTGG G A - T I N Q L L V - S E G F T S E C W E L R R S I N Y L Y S Q R G L P V N V G G S L D D Q S I T C I V R G V Y Q - M L . . . . . . 79623 TGAACAGATGTTCTTGACTGTGCTTAATGTGATGACAAGCATGTTATGGGGAGGCACGAT - T D V L D C A - C D D K H V M G R H D E Q M F L T V L N V M T S M L W G G T M V N R C S - L C L M - - Q A C Y G E A R . . . . . . 79683 GAAGGGTGAGGAAAGAGCTACTCTTGGAGCTGAGTTTAGGCATGTTGTGACTGAGATAGC E G - G K S Y S W S - V - A C C D - D S K G E E R A T L G A E F R H V V T E I A - R V R K E L L L E L S L G M L - L R - . . . . . . 79743 TGAGTTGATCAGTATTCCCAATCTTTCTGATTTTTACCCGGGCTTGGCCTGGTTTGATTT - V D Q Y S Q S F - F L P G L G L V - F E L I S I P N L S D F Y P G L A W F D F L S - S V F P I F L I F T R A W P G L I . . . . . . 79803 CCAGGGTGTTATAAAGAAGATTAAGGTGTTGCTAAAGAGATTTGATAAGATATTTGAAAG P G C Y K E D - G V A K E I - - D I - K Q G V I K K I K V L L K R F D K I F E S S R V L - R R L R C C - R D L I R Y L K . . . . . . 79863 CATGATTGATCAAAGACAAAAATTAGACAGAAATGGTGTTGGCCAAGAAAGCAAAGACTT H D - S K T K I R Q K W C W P R K Q R L M I D Q R Q K L D R N G V G Q E S K D F A - L I K D K N - T E M V L A K K A K T . . . . . . 79923 TTTGCAAGTTTTGCTCAAGTTGAAAGATGAAGCAGATGCCAAAATGCCTCTGACCATGAC F A S F A Q V E R - S R C Q N A S D H D L Q V L L K L K D E A D A K M P L T M T F C K F C S S - K M K Q M P K C L - P - . . . : . . . 79983 TGAAATCAAAGCCTTACTTATG : GATTTGGTTGTCGGTGGAACTGACACAACTTCCAACGC - N Q S L T Y : G F G C R W N - H N F Q R E I K A L L M : D L V V G G T D T T S N A L K S K P Y L W : I W L S V E L T Q L P T . . . . . . 80417 GGTTGAGTTTGCCATGGCTGAAATTTTGAACAAACCAGATATCCTGAGAAAAATACAACA G - V C H G - N F E Q T R Y P E K N T T V E F A M A E I L N K P D I L R K I Q Q R L S L P W L K F - T N Q I S - E K Y N . . . . . . 80477 AGAAGTAGATACAGTTGTGGGAAAAGATAACATAGTGGAAGAGTCTCATATTCAACAGTT R S R Y S C G K R - H S G R V S Y S T V E V D T V V G K D N I V E E S H I Q Q L K K - I Q L W E K I T - W K S L I F N S . . . . . . 80537 ACCATATCTCTATGCAGTGATGAAAGAAGCCATGCGCATACATCCAGCCCTCCCACTCTT T I S L C S D E R S H A H T S S P P T L P Y L Y A V M K E A M R I H P A L P L L Y H I S M Q - - K K P C A Y I Q P S H S . . . . . . 80597 GGCTCCTCATTGTCCTAGTGAGACAATCACTGTTGGTGGATACACTGTTCCTAAAGGGTC G S S L S - - D N H C W W I H C S - R V A P H C P S E T I T V G G Y T V P K G S W L L I V L V R Q S L L V D T L F L K G . . . . . . 80657 TCGTGTTTTTGTAAATGTATGGGCTATACACAGAGATCCTTCTATGTGGAAAAATCCAAC S C F C K C M G Y T Q R S F Y V E K S N R V F V N V W A I H R D P S M W K N P T L V F L - M Y G L Y T E I L L C G K I Q . . . . . . 80717 AGAGTTCTGTCCAGAGAGATTTTTGGATAATAAATGGAATTATAGTGGAAATGATTTCAA R V L S R E I F G - - M E L - W K - F Q E F C P E R F L D N K W N Y S G N D F N Q S S V Q R D F W I I N G I I V E M I S . . . . . . 80777 CTATTTCCCATTTGGTTCTGGCAGAAGAATGTGTGCGGGGATAGCCATGGCAGAGAGGAT L F P I W F W Q K N V C G D S H G R E D Y F P F G S G R R M C A G I A M A E R M T I S H L V L A E E C V R G - P W Q R G . . . . . . 80837 GTTCATGTATTCACTGGCTTCACTCATTCATTCTTTCGATTGGAAATTGCCTGAAGGAGA V H V F T G F T H S F F R L E I A - R R F M Y S L A S L I H S F D W K L P E G E C S C I H W L H S F I L S I G N C L K E . . . . . . 80897 GACGTTAGACCTTAAAGAGAAGTTTTGTATTGCTTTGAAGAAGAAAATGCCTCTGGTGGC D V R P - R E V L Y C F E E E N A S G G T L D L K E K F C I A L K K K M P L V A R R - T L K R S F V L L - R R K C L W W . . . . . . 80957 TATACCTACTCCAAGATTGTCCAATCCAACACAGTATGAGTAAGATAAAAATGTATCACT Y T Y S K I V Q S N T V - V R - K C I T I P T P R L S N P T Q Y E - D K N V S L L Y L L Q D C P I Q H S M S K I K M Y H . . . . . 81017 GTTATGTGCTAATGTCTTTCAAAGACAAATACTTTGAACATTGAAT V M C - C L S K T N T L N I E L C A N V F Q R Q I L - T L N C Y V L M S F K D K Y F E H - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-16_AGS-2_PPS_1 (78707 78710,78980 79023,79054 80004,80379 80999) (frame '2'; 1617 bp, 539 residues) 1 ECLFIFISFF LQSQNKMSLK FFKPLFDSFP WPLQELNVEQ NGVFFSCFLG FLALLWCFIR 61 NSNKGLPPGP KALPLIGNLH SLDASSETHI YFASLSQTYG PICRLWLGLK VGIIITSSDL 121 AREVLKDKDT IFANREVSAA GREFSYGVND LIWSPYGLKW RMLRKVCVRD MLSSSNIDSV 181 YALRRRELRR SINYLYSQRG LPVNVGEQMF LTVLNVMTSM LWGGTMKGEE RATLGAEFRH 241 VVTEIAELIS IPNLSDFYPG LAWFDFQGVI KKIKVLLKRF DKIFESMIDQ RQKLDRNGVG 301 QESKDFLQVL LKLKDEADAK MPLTMTEIKA LLMDLVVGGT DTTSNAVEFA MAEILNKPDI 361 LRKIQQEVDT VVGKDNIVEE SHIQQLPYLY AVMKEAMRIH PALPLLAPHC PSETITVGGY 421 TVPKGSRVFV NVWAIHRDPS MWKNPTEFCP ERFLDNKWNY SGNDFNYFPF GSGRRMCAGI 481 AMAERMFMYS LASLIHSFDW KLPEGETLDL KEKFCIALKK KMPLVAIPTP RLSNPTQYE- >C08HBa0060C12.1+_PGL-16_AGS-2_PPS_2 (76996 77288,78262 78320,78656 78690) (frame '1'; 384 bp, 128 residues) 1 WKNPTEFRPE RFLDNKWDFS GNDFNYFPFG SGRRICVGLD MAERMFMYSL ASLIHSFDWK 61 LPEGETLEVT EKFGIIMKKK MPLVAIPTPR LSNPSLYETR VVMNMILIHL RLWTRDEIIY 121 NLIMSIEL- AGS-3 (80703 80995,81117 81130,81220 81245,81735 81780,81989 82022,82234 82270,82902 83851,84242 84996) SCR (e 0.881 d 0.947 a 0.365,e 0.500 d 0.900 a 0.000,e 0.692 d 0.000 a 0.000,e 0.543 d 0.443 a 0.873,e 0.559 d 0.385 a 0.000,e 0.595 d 0.055 a 0.000,e 0.856 d 0.999 a 0.958,e 1.000) Exon 1 80703 80995 ( 293 n); score: 0.881 Intron 1 80996 81116 ( 121 n); Pd: 0.947 Pa: 0.365 Exon 2 81117 81130 ( 14 n); score: 0.500 Intron 2 81131 81219 ( 89 n); Pd: 0.900 Pa: 0.000 Exon 3 81220 81245 ( 26 n); score: 0.692 Intron 3 81246 81734 ( 489 n); Pd: 0.000 Pa: 0.000 Exon 4 81735 81780 ( 46 n); score: 0.543 Intron 4 81781 81988 ( 208 n); Pd: 0.443 Pa: 0.873 Exon 5 81989 82022 ( 34 n); score: 0.559 Intron 5 82023 82233 ( 211 n); Pd: 0.385 Pa: 0.000 Exon 6 82234 82270 ( 37 n); score: 0.595 Intron 6 82271 82901 ( 631 n); Pd: 0.055 Pa: 0.000 Exon 7 82902 83851 ( 950 n); score: 0.856 Intron 7 83852 84241 ( 390 n); Pd: 0.999 Pa: 0.958 Exon 8 84242 84996 ( 755 n); score: 1.000 PGS (80703 80995,81117 81130,81220 81245,81735 81780,81989 82022,82234 82270,82902 83044) SGN-E320419+ PGS (82901 83704) SGN-E553649+ PGS (82907 83671) SGN-E554337+ PGS (83402 83851,84242 84528) SGN-E378935+ PGS (83402 83851,84242 84344) SGN-E206806+ PGS (83435 83851,84242 84307) SGN-E205363+ PGS (83808 83851,84242 84858) SGN-E378974- PGS (84364 84996) SGN-E551573+ PGS (84558 84814) SGN-E234103- PGS (84561 84814) SGN-E234174- PGS (84566 84900) SGN-E320419+ PGS (84626 84889) SGN-E243190+ 3-phase translation of AGS-3 (+strand): . . . . . . 80703 TGGAAAAATCCAACAGAGTTCTGTCCAGAGAGATTTTTGGATAATAAATGGAATTATAGT W K N P T E F C P E R F L D N K W N Y S G K I Q Q S S V Q R D F W I I N G I I V E K S N R V L S R E I F G - - M E L - . . . . . . 80763 GGAAATGATTTCAACTATTTCCCATTTGGTTCTGGCAGAAGAATGTGTGCGGGGATAGCC G N D F N Y F P F G S G R R M C A G I A E M I S T I S H L V L A E E C V R G - P W K - F Q L F P I W F W Q K N V C G D S . . . . . . 80823 ATGGCAGAGAGGATGTTCATGTATTCACTGGCTTCACTCATTCATTCTTTCGATTGGAAA M A E R M F M Y S L A S L I H S F D W K W Q R G C S C I H W L H S F I L S I G N H G R E D V H V F T G F T H S F F R L E . . . . . . 80883 TTGCCTGAAGGAGAGACGTTAGACCTTAAAGAGAAGTTTTGTATTGCTTTGAAGAAGAAA L P E G E T L D L K E K F C I A L K K K C L K E R R - T L K R S F V L L - R R K I A - R R D V R P - R E V L Y C F E E E . . . . . . : 80943 ATGCCTCTGGTGGCTATACCTACTCCAAGATTGTCCAATCCAACACAGTATGA : ACCGAAA M P L V A I P T P R L S N P T Q Y E : P K C L W W L Y L L Q D C P I Q H S M : N R N N A S G G Y T Y S K I V Q S N T V - : T E . : . . . : . . 81124 CAATCAA : TCAACATGTGCAATTTCATGTTTGAT : AAACTACAAATTAAGACATAGTATTCA Q S : I N M C N F M F D : K L Q I K T - Y S N Q : S T C A I S C L I : N Y K L R H S I H T I N : Q H V Q F H V - : - T T N - D I V F . . : . . . . : 81762 TCAATGATCTAATTGTAAC : GTGCATCAGGTCTAACGAACCCGCCGTTAGCTAC : GAGTTCA S M I - L - : R A S G L T N P P L A T : S S Q - S N C N : V H Q V - R T R R - L : R V H I N D L I V T : C I R S N E P A V S Y : E F . . . : . . . 82241 TCCCAAATAACTATTTTGGTATCATATCAA : TGTCTCTCAAATTCTTCAAACCCCTTTTTG S Q I T I L V S Y Q : C L S N S S N P F L P K - L F W Y H I N : V S Q I L Q T P F - I P N N Y F G I I S : M S L K F F K P L F . . . . . . 82932 AATCTTTCCCATGGCTCCTTCAACAACTCAATGCTGAGAATAAGGCTGTATTTTTCTCCT N L S H G S F N N S M L R I R L Y F S P I F P M A P S T T Q C - E - G C I F L L E S F P W L L Q Q L N A E N K A V F F S . . . . . . 82992 GTTTTCTTGGTTTTTTAGCTTTACTTTGGTGTTTCATCAGTAACTCAAACAAGGGATTGC V F L V F - L Y F G V S S V T Q T R D C F S W F F S F T L V F H Q - L K Q G I A C F L G F L A L L W C F I S N S N K G L . . . . . . 83052 CACCAGGGCCTAAACCTTTGCCCTTGATAGGTAATCTCTATTCTCTTGATCCCACCTATT H Q G L N L C P - - V I S I L L I P P I T R A - T F A L D R - S L F S - S H L F P P G P K P L P L I G N L Y S L D P T Y . . . . . . 83112 TTGCATCTCTTTCCCAAACTTATGGCCCCATTTGTAGACTCTGGCTTGGTAAAAAAGTTG L H L F P K L M A P F V D S G L V K K L C I S F P N L W P H L - T L A W - K S W F A S L S Q T Y G P I C R L W L G K K V . . . . . . 83172 GGATTATTATTACTTCACCTACCTTAGCTCGTGAGGTTCTTAAGGATAAAGACACCATTT G L L L L H L P - L V R F L R I K T P F D Y Y Y F T Y L S S - G S - G - R H H F G I I I T S P T L A R E V L K D K D T I . . . . . . 83232 TTGCTAACAGAGATGTCCCAGCTGCTGCAAAAGAATTATCATATGGTGGCAATAGCATAC L L T E M S Q L L Q K N Y H M V A I A Y C - Q R C P S C C K R I I I W W Q - H T F A N R D V P A A A K E L S Y G G N S I . . . . . . 83292 TTTGGACTCCTTATGGACCGAAATGGAGAATGTTGAGGAAGGTTTGCGTTCGCAATATGC F G L L M D R N G E C - G R F A F A I C L D S L W T E M E N V E E G L R S Q Y A L W T P Y G P K W R M L R K V C V R N M . . . . . . 83352 TTAGTTATTCTACTTTAGATTCTGTTTATGCACTAAGGAAAAGGGAGCTTAGACAATCGA L V I L L - I L F M H - G K G S L D N R - L F Y F R F C L C T K E K G A - T I D L S Y S T L D S V Y A L R K R E L R Q S . . . . . . 83412 TCAATTACTTCTACAGTCAGAAGGGTTTACCAGTAAATGTTGGTGAGCAGATGTTCTTGA S I T S T V R R V Y Q - M L V S R C S - Q L L L Q S E G F T S K C W - A D V L E I N Y F Y S Q K G L P V N V G E Q M F L . . . . . . 83472 GTTCACTTAATGTGATTACAAGCATGTTATGGGGTGGCACAGTGAAGGGTGAGGAAAGAG V H L M - L Q A C Y G V A Q - R V R K E F T - C D Y K H V M G W H S E G - G K S S S L N V I T S M L W G G T V K G E E R . . . . . . 83532 CTACTCTTGGAGCTGAGTTTAGGCATATTGTCACTGAAATGGCTGCGCTGGTCAGTATTC L L L E L S L G I L S L K W L R W S V F Y S W S - V - A Y C H - N G C A G Q Y S A T L G A E F R H I V T E M A A L V S I . . . . . . 83592 CCAATTATTCCGATTTTTACCCGGGCTTGGCCTGGTTTGATTTCCAAGGTGTTGCAAAAA P I I P I F T R A W P G L I S K V L Q K Q L F R F L P G L G L V - F P R C C K K P N Y S D F Y P G L A W F D F Q G V A K . . . . . . 83652 AGATGAAGGTGTTGGCAAGGAGATTTGATAAGATGTTTGAGAGCATGATTGATCAAAGAC R - R C W Q G D L I R C L R A - L I K D D E G V G K E I - - D V - E H D - S K T K M K V L A R R F D K M F E S M I D Q R . . . . . . 83712 AAAAATTGCATAGAAATGCTGAGATGGGATATGGTGTTGGCCAAGAAAGCAAAGACTTTT K N C I E M L R W D M V L A K K A K T F K I A - K C - D G I W C W P R K Q R L F Q K L H R N A E M G Y G V G Q E S K D F . . . . . . 83772 TGCAAGTTTTGCTGAAGTTGAAAGATGAAGCAGATCCCAAAGTACCTCTGACCATGACTG C K F C - S - K M K Q I P K Y L - P - L A S F A E V E R - S R S Q S T S D H D - L Q V L L K L K D E A D P K V P L T M T . . : . . . . 83832 AAATCAAAGCCTTACTTATG : GAAATGGTTCTCGGTGGAACTGCCACTACCGCCAACACAG K S K P Y L W : K W F S V E L P L P P T Q N Q S L T Y : G N G S R W N C H Y R Q H S E I K A L L M : E M V L G G T A T T A N T . . . . . . 84282 TTGAGTTTGCCCTGGCTGAAATTATGCACAAACCGGATATCCTGAGTAAATTACAACAAG L S L P W L K L C T N R I S - V N Y N K - V C P G - N Y A Q T G Y P E - I T T R V E F A L A E I M H K P D I L S K L Q Q . . . . . . 84342 AAGTAGATACAGTTGTGGGAAAAGATAATATTGTAGAAGAGTCTCATATTCAGCAATTAC K - I Q L W E K I I L - K S L I F S N Y S R Y S C G K R - Y C R R V S Y S A I T E V D T V V G K D N I V E E S H I Q Q L . . . . . . 84402 CATATCTCTATGCAGTGATGAAAGAAGTATTGCGCATGCATCCAGCTACTCCGCTATTGG H I S M Q - - K K Y C A C I Q L L R Y W I S L C S D E R S I A H A S S Y S A I G P Y L Y A V M K E V L R M H P A T P L L . . . . . . 84462 TGCCACATTGTCCAAGTGAAACATGCACTGTGGGAGGATACACTGTTCCTAAAGGATCTC C H I V Q V K H A L W E D T L F L K D L A T L S K - N M H C G R I H C S - R I S V P H C P S E T C T V G G Y T V P K G S . . . . . . 84522 GTGTTTTCATAAATGTATGGGCTATACAAAGAGATCCTTCTATCTGGAGAAATCCAACAG V F S - M Y G L Y K E I L L S G E I Q Q C F H K C M G Y T K R S F Y L E K S N R R V F I N V W A I Q R D P S I W R N P T . . . . . . 84582 AGTTCCGTCCAGAGAGATTTTTGGACAATAAATGGGATTTTAGTGGAAATGATTTCAACT S S V Q R D F W T I N G I L V E M I S T V P S R E I F G Q - M G F - W K - F Q L E F R P E R F L D N K W D F S G N D F N . . . . . . 84642 ATTTTCCATTTGGTTCTGGCAGAAGAATCTGTGTGGGGATAGGCATGGCAGAGAGGATGT I F H L V L A E E S V W G - A W Q R G C F S I W F W Q K N L C G D R H G R E D V Y F P F G S G R R I C V G I G M A E R M . . . . . . 84702 TCATGTATGCACTGGCTTCGCTCATTCATTCTTTTGATTGGAAATTGCCTGAAGGAGAGA S C M H W L R S F I L L I G N C L K E R H V C T G F A H S F F - L E I A - R R D F M Y A L A S L I H S F D W K L P E G E . . . . . . 84762 CACCAGACCTTACAGAGATGTTTGATATTACTTTGAGGAAGAAAATTCCTCTGGTGACTA H Q T L Q R C L I L L - G R K F L W - L T R P Y R D V - Y Y F E E E N S S G D Y T P D L T E M F D I T L R K K I P L V T . . . . . . 84822 TACCTACTCCAAGATTGTCCAATCCAACACTCTATGAGTAAGATAAAGATATATCTGTTG Y L L Q D C P I Q H S M S K I K I Y L L T Y S K I V Q S N T L - V R - R Y I C - I P T P R L S N P T L Y E - D K D I S V . . . . . . 84882 AGAGTCGTCTTCTGTATGATGATTCTGTATTATCTCGAATCTGTGCATTTTCTTTACTAT R V V F C M M I L Y Y L E S V H F L Y Y E S S S V - - F C I I S N L C I F F T M E S R L L Y D D S V L S R I C A F S L L . . . . . . 84942 GTAAGAAATGTCACTTTCTTCTCTCTCTTGTTCAATGTTTAAACCAACTTTGGTC V R N V T F F S L L F N V - T N F G - E M S L S S L S C S M F K P T L V C K K C H F L L S L V Q C L N Q L W Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-16_AGS-3_PPS_1 (81749 81780,81989 82022,82234 82270,82902 83851,84242 84862) (frame '0'; 1671 bp, 557 residues) 1 DIVFINDLIV TCIRSNEPAV SYEFIPNNYF GIISMSLKFF KPLFESFPWL LQQLNAENKA 61 VFFSCFLGFL ALLWCFISNS NKGLPPGPKP LPLIGNLYSL DPTYFASLSQ TYGPICRLWL 121 GKKVGIIITS PTLAREVLKD KDTIFANRDV PAAAKELSYG GNSILWTPYG PKWRMLRKVC 181 VRNMLSYSTL DSVYALRKRE LRQSINYFYS QKGLPVNVGE QMFLSSLNVI TSMLWGGTVK 241 GEERATLGAE FRHIVTEMAA LVSIPNYSDF YPGLAWFDFQ GVAKKMKVLA RRFDKMFESM 301 IDQRQKLHRN AEMGYGVGQE SKDFLQVLLK LKDEADPKVP LTMTEIKALL MEMVLGGTAT 361 TANTVEFALA EIMHKPDILS KLQQEVDTVV GKDNIVEESH IQQLPYLYAV MKEVLRMHPA 421 TPLLVPHCPS ETCTVGGYTV PKGSRVFINV WAIQRDPSIW RNPTEFRPER FLDNKWDFSG 481 NDFNYFPFGS GRRICVGIGM AERMFMYALA SLIHSFDWKL PEGETPDLTE MFDITLRKKI 541 PLVTIPTPRL SNPTLYE- >C08HBa0060C12.1+_PGL-16_AGS-3_PPS_2 (80703 80995,81117 81130,81220 81245,81735 81755) (frame '1'; 351 bp, 117 residues) 1 WKNPTEFCPE RFLDNKWNYS GNDFNYFPFG SGRRMCAGIA MAERMFMYSL ASLIHSFDWK 61 LPEGETLDLK EKFCIALKKK MPLVAIPTPR LSNPTQYEPK QSINMCNFMF DKLQIKT- AGS-4 (82865 82885,84037 84042,84417 84432,85017 85040,87621 87628,87802 87899,88037 88263) SCR (e 0.762 d 0.613 a 0.083,e 0.667 d 0.900 a 0.926,e 0.625 d 0.000 a 0.000,e 0.792 d 0.000 a 0.323,e 0.625 d 0.900 a 0.000,e 0.770 d 0.319 a 0.000,e 0.916) Exon 1 82865 82885 ( 21 n); score: 0.762 Intron 1 82886 84036 (1151 n); Pd: 0.613 Pa: 0.083 Exon 2 84037 84042 ( 6 n); score: 0.667 Intron 2 84043 84416 ( 374 n); Pd: 0.900 Pa: 0.926 Exon 3 84417 84432 ( 16 n); score: 0.625 Intron 3 84433 85016 ( 584 n); Pd: 0.000 Pa: 0.000 Exon 4 85017 85040 ( 24 n); score: 0.792 Intron 4 85041 87620 (2580 n); Pd: 0.000 Pa: 0.323 Exon 5 87621 87628 ( 8 n); score: 0.625 Intron 5 87629 87801 ( 173 n); Pd: 0.900 Pa: 0.000 Exon 6 87802 87899 ( 98 n); score: 0.770 Intron 6 87900 88036 ( 137 n); Pd: 0.319 Pa: 0.000 Exon 7 88037 88263 ( 227 n); score: 0.916 PGS (82865 82885,84037 84042,84417 84432,85017 85040,87621 87628,87802 87899,88037 88263) SGN-E543331+ PGS (88041 88262) SGN-E370622- 3-phase translation of AGS-4 (+strand): . . . : : . . : . 82865 CAAAATCAGAATCTTTTAGAG : ATTCGT : TGATGAAAGAAGTATT : GTCTGAGGAGATGAAAT Q N Q N L L E : I R : - - K K Y : C L R R - N K I R I F - R : F V : D E R S I : V - G D E I K S E S F R : D S : L M K E V L : S E E M K . : . : . . . . 85034 TGCATTA : TTCTAGCA : ATTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGT C I : I L A : I C W V L F A L N F L P - I G A L : F - Q : F V G F Y L P - I S Y H K - V L H Y : S S : N L L G F I C P K F L T I N R . . . . . . : 87847 TTTCCTTGTAGGAAAAGATTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAG : CTCCCAT F P C R K R F W I D - S F S C R K S : S H F L V G K D F G L T N P F L V G K : A P M F S L - E K I L D - L I L F L - E K : L P . . . . . . 88044 GTATTCTAAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATA V F - V N W L R L F L S V F C T L I F I Y S K - I G - G C F S L Y F V L S Y L - C I L S E L V E V V S L C I L Y S H I Y . . . . . . 88104 GTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTTG V D C S S P L W T - V D - P N H V K S L W I A H L L C G R R S I D R T T L N L C S G L L I S F V D V G R L T E P R - I F . . . . . . 88164 TGTCTTTTGATATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGTATTGCT C L L I Y F S L S S Y S W S F E V C I A V F - Y I S R C L L T R G L S R F V L L V S F D I F L V V F L L V V F R G L Y C . . . . 88224 AGCTTCCGCGTTTACACTTGCTTATTTTCGGTCCTAACAA S F R V Y T C L F S V L T A S A F T L A Y F R S - Q - L P R L H L L I F G P N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (87515 87899,88328 88636) SCR (e 0.974 d 0.319 a 0.000,e 0.951) Exon 1 87515 87899 ( 385 n); score: 0.974 Intron 1 87900 88327 ( 428 n); Pd: 0.319 Pa: 0.000 Exon 2 88328 88636 ( 309 n); score: 0.951 PGS (87515 87881) SGN-E271645- PGS (87672 87899,88328 88636) SGN-E243194- 3-phase translation of AGS-5 (+strand): . . . . . . 87515 TAACAAATTGGTATCAGAGCCAGATTCAATGACGAAGTCAGGTTCAGTGGTTTGATAATC - Q I G I R A R F N D E V R F S G L I I N K L V S E P D S M T K S G S V V - - S T N W Y Q S Q I Q - R S Q V Q W F D N . . . . . . 87575 GATGATTGAACCAGGTTAGAAAGATGTGTTCATCTTGGCGGTGTAGTTCTAGCAGTAACC D D - T R L E R C V H L G G V V L A V T M I E P G - K D V F I L A V - F - Q - P R - L N Q V R K M C S S W R C S S S S N . . . . . . 87635 TTTTTGACAGTAATGAAGATTTTGTTGGAGAAATCGTTTCAGAGAGATTCTTTGTGTTGA F L T V M K I L L E K S F Q R D S L C - F - Q - - R F C W R N R F R E I L C V E L F D S N E D F V G E I V S E R F F V L . . . . . . 87695 GACATAAATTTTGCAAAGTAGATTATGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTCA D I N F A K - I M E R R S K L L K I K S T - I L Q S R L W R G E A S C - R L S Q R H K F C K V D Y G E E K Q V V E D - V . . . . . . 87755 AGAAGGTGGACAAATTTATTTTGTCAGAAATTCAGGCCAAGGGGGAGATTTGTTGGGTTT R R W T N L F C Q K F R P R G R F V G F E G G Q I Y F V R N S G Q G G D L L G F K K V D K F I L S E I Q A K G E I C W V . . . . . . 87815 TATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAGATTTTGGATTG Y L P - I S Y H K - V F L V G K D F G L I C P K F L T I N R F S L - E K I L D - L F A L N F L P - I G F P C R K R F W I . . . : . . . 87875 ACTAATCCTTTTCTTGTAGGAAAAG : ATTTTGGATTGACTAATCCTTTTCTTGTAGGAAAA T N P F L V G K : D F G L T N P F L V G K L I L F L - E K : I L D - L I L F L - E K D - S F S C R K R : F W I D - S F S C R K . . . . . . 88363 GGTTTAGGACTCTATAAATAGAGGCATGTTCCTTCTAACTTAATCAACATATCACAAAGT G L G L Y K - R H V P S N L I N I S Q S V - D S I N R G M F L L T - S T Y H K V R F R T L - I E A C S F - L N Q H I T K . . . . . . 88423 AGTCTTAAAAGCTTTGAGAGTTTTGGTTAGAGGGAGAATCTGTGGGTCACAAGCTTGATA S L K S F E S F G - R E N L W V T S L I V L K A L R V L V R G R I C G S Q A - Y - S - K L - E F W L E G E S V G H K L D . . . . . . 88483 TGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTGGTTGAGGTTGTTTCTCT C Y H L C E P P M Y S E - I G - G C F S V I T C V N L P C I L S E L V E V V S L M L S L V - T S H V F - V N W L R L F L . . . . . . 88543 CTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTATGGACGTAGGTCG L Y F V L S Y L - W I A H L L Y G R R S C I L Y S H I Y S G L L I S F M D V G R S V F C T L I F I V D C S S P L W T - V . . . . 88603 ATTGACCGAACCACGTTAAATCTTTGTGTCTTTT I D R T T L N L C V F L T E P R - I F V S F D - P N H V K S L C L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-6 (87803 88272) SCR (e 0.955) Exon 1 87803 88272 ( 470 n); score: 0.955 PGS (87803 88257) SGN-E206285- PGS (87804 88272) SGN-E211090+ PGS (87804 88240) SGN-E205772+ PGS (87804 88207) SGN-E205773+ PGS (87995 88257) SGN-E206496- PGS (87998 88258) SGN-E207598- PGS (88011 88262) SGN-E389613- 3-phase translation of AGS-6 (+strand): . . . . . . 87803 TTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAA F V G F Y L P - I S Y H K - V F L V G K L L G F I C P K F L T I N R F S L - E K C W V L F A L N F L P - I G F P C R K . . . . . . 87863 GATTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGAGG D F G L T N P F L V G K G L G L Y K - R I L D - L I L F L - E K V - D S I N R G R F W I D - S F S C R K R F R T L - I E . . . . . . 87923 CATGTTCCTTTTAACTTAATCAACATTCACAATGTAGTCTTAAAAGCTTTGAGAGTTTTG H V P F N L I N I H N V V L K A L R V L M F L L T - S T F T M - S - K L - E F W A C S F - L N Q H S Q C S L K S F E S F . . . . . . 87983 GTTAGAGGGAGAATCTGTGGGTCACAAGCTTGATATGTTATCACTTGTGTGAACCTCCCA V R G R I C G S Q A - Y V I T C V N L P L E G E S V G H K L D M L S L V - T S H G - R E N L W V T S L I C Y H L C E P P . . . . . . 88043 TGTATTCTAAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTAT C I L S E L V E V V S L C I L Y S H I Y V F - V N W L R L F L S V F C T L I F I M Y S K - I G - G C F S L Y F V L S Y L . . . . . . 88103 AGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTT S G L L I S F V D V G R L T E P R - I F V D C S S P L W T - V D - P N H V K S L - W I A H L L C G R R S I D R T T L N L . . . . . . 88163 GTGTCTTTTGATATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGTATTGC V S F D I F L V V F L L V V F R G L Y C C L L I Y F S L S S Y S W S F E V C I A C V F - Y I S R C L L T R G L S R F V L . . . . . 88223 TAGCTTCCGCGTTTACACTTGCTTATTTTCGGTCCTAACAAGTATTTGTT - L P R L H L L I F G P N K Y L S F R V Y T C L F S V L T S I C L A S A F T L A Y F R S - Q V F V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-6 (-strand): . . . . . . 88272 AACAAATACTTGTTAGGACCGAAAATAAGCAAGTGTAAACGCGGAAGCTAGCAATACAAA N K Y L L G P K I S K C K R G S - Q Y K T N T C - D R K - A S V N A E A S N T N Q I L V R T E N K Q V - T R K L A I Q . . . . . . 88212 CCTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATATCAAAAGACACAAAGATTTAA P R K T T S K K T T R N I S K D T K I - L E R P R V R R Q R E I Y Q K T Q R F N T S K D H E - E D N E K Y I K R H K D L . . . . . . 88152 CGTGGTTCGGTCAATCGACCTACGTCCACAAAGGAGATGAGCAATCCACTATAAATATGA R G S V N R P T S T K E M S N P L - I - V V R S I D L R P Q R R - A I H Y K Y E T W F G Q S T Y V H K G D E Q S T I N M . . . . . . 88092 GAGTACAAAATACAGAGAGAAACAACCTCAACCAATTCACTTAGAATACATGGGAGGTTC E Y K I Q R E T T S T N S L R I H G R F S T K Y R E K Q P Q P I H L E Y M G G S R V Q N T E R N N L N Q F T - N T W E V . . . . . . 88032 ACACAAGTGATAACATATCAAGCTTGTGACCCACAGATTCTCCCTCTAACCAAAACTCTC T Q V I T Y Q A C D P Q I L P L T K T L H K - - H I K L V T H R F S L - P K L S H T S D N I S S L - P T D S P S N Q N S . . . . . . 87972 AAAGCTTTTAAGACTACATTGTGAATGTTGATTAAGTTAAAAGGAACATGCCTCTATTTA K A F K T T L - M L I K L K G T C L Y L K L L R L H C E C - L S - K E H A S I Y Q S F - D Y I V N V D - V K R N M P L F . . . . . . 87912 TAGAGTCCTAAACCTTTTCCTACAAGAAAAGGATTAGTCAATCCAAAATCTTTTCCTACA - S P K P F P T R K G L V N P K S F P T R V L N L F L Q E K D - S I Q N L F L Q I E S - T F S Y K K R I S Q S K I F S Y . . . . . 87852 AGGAAAACCTATTTATGGTAAGAAATTTAGGGCAAATAAAACCCAACAAA R K T Y L W - E I - G K - N P T G K P I Y G K K F R A N K T Q Q K E N L F M V R N L G Q I K P N K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-7 (87894 87921,88134 88262) SCR (e 0.571 d 0.999 a 0.712,e 0.884) Exon 1 87894 87921 ( 28 n); score: 0.571 Intron 1 87922 88133 ( 212 n); Pd: 0.999 Pa: 0.712 Exon 2 88134 88262 ( 129 n); score: 0.884 PGS (87894 87921,88134 88262) SGN-E544264+ 3-phase translation of AGS-7 (+strand): . . . : . . . 87894 GAAAAGGTTTAGGACTCTATAAATAGAG : GTCGATTGACCGAACCACGTTAAATCTTTGTG E K V - D S I N R : G R L T E P R - I F V K R F R T L - I E : V D - P N H V K S L C K G L G L Y K - R : S I D R T T L N L C . . . . . . 88166 TCTTTTGATATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGTATTGCTAG S F D I F L V V F L L V V F R G L Y C - L L I Y F S L S S Y S W S F E V C I A S V F - Y I S R C L L T R G L S R F V L L . . . . 88226 CTTCCGCGTTTACACTTGCTTATTTTCGGTCCTAACA L P R L H L L I F G P N F R V Y T C L F S V L T A S A F T L A Y F R S - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-8 (88041 88211,88677 88745) SCR (e 0.933 d 0.917 a 0.550,e 0.819) Exon 1 88041 88211 ( 171 n); score: 0.933 Intron 1 88212 88676 ( 465 n); Pd: 0.917 Pa: 0.550 Exon 2 88677 88745 ( 69 n); score: 0.819 PGS (88041 88211,88677 88745) SGN-E271645- 3-phase translation of AGS-8 (+strand): . . . . . . 88041 CATGTATTCTAAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTT H V F - V N W L R L F L S V F C T L I F M Y S K - I G - G C F S L Y F V L S Y L C I L S E L V E V V S L C I L Y S H I . . . . . . 88101 ATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCT I V D C S S P L W T - V D - P N H V K S - W I A H L L C G R R S I D R T T L N L Y S G L L I S F V D V G R L T E P R - I . . . . . . : 88161 TTGTGTCTTTTGATATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAG : GTTTGTATT L C L L I Y F S L S S Y S W S F E : V C I C V F - Y I S R C L L T R G L S R : F V L F V S F D I F L V V F L L V V F R : G L Y . . . . . . 88686 GCTAGCTTCAGCGTTTACACCTGTTTATTTTCGGTCCTAACAAGTGGTATCAGAGCCTCT A S F S V Y T C L F S V L T S G I R A S L A S A F T P V Y F R S - Q V V S E P C - L Q R L H L F I F G P N K W Y Q S L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (+ strand): 90665 101729 AGS-1 (90665 90878,92315 92349,92417 92450,92549 92582,93155 93173,93204 93286,94388 94399,95277 95297,96671 96678,96951 96987) SCR (e 0.897 d 0.000 a 0.121,e 0.600 d 0.000 a 0.000,e 0.618 d 0.089 a 0.000,e 0.706 d 0.000 a 0.645,e 0.579 d 0.935 a 0.000,e 0.554 d 0.893 a 0.999,e 0.750 d 0.000 a 0.413,e 0.595 d 0.354 a 0.838,e 0.750 d 0.000 a 0.000,e 0.742) Exon 1 90665 90878 ( 214 n); score: 0.897 Intron 1 90879 92314 (1436 n); Pd: 0.000 Pa: 0.121 Exon 2 92315 92349 ( 35 n); score: 0.600 Intron 2 92350 92416 ( 67 n); Pd: 0.000 Pa: 0.000 Exon 3 92417 92450 ( 34 n); score: 0.618 Intron 3 92451 92548 ( 98 n); Pd: 0.089 Pa: 0.000 Exon 4 92549 92582 ( 34 n); score: 0.706 Intron 4 92583 93154 ( 572 n); Pd: 0.000 Pa: 0.645 Exon 5 93155 93173 ( 19 n); score: 0.579 Intron 5 93174 93203 ( 30 n); Pd: 0.935 Pa: 0.000 Exon 6 93204 93286 ( 83 n); score: 0.554 Intron 6 93287 94387 (1101 n); Pd: 0.893 Pa: 0.999 Exon 7 94388 94399 ( 12 n); score: 0.750 Intron 7 94400 95276 ( 877 n); Pd: 0.000 Pa: 0.413 Exon 8 95277 95297 ( 21 n); score: 0.595 Intron 8 95298 96670 (1373 n); Pd: 0.354 Pa: 0.838 Exon 9 96671 96678 ( 8 n); score: 0.750 Intron 9 96679 96950 ( 272 n); Pd: 0.000 Pa: 0.000 Exon 10 96951 96987 ( 37 n); score: 0.742 PGS (90665 90878,92315 92349,92417 92450,92549 92582,93155 93173,93204 93286,94388 94399,95277 95297,96671 96678,96951 96987) SGN-E301078+ PGS (90665 90878,92315 92349,92417 92450,92549 92582,93155 93173,93204 93286,94388 94399,95277 95297,96671 96678,96951 96981) SGN-E301194+ 3-phase translation of AGS-1 (+strand): . . . . . . 90665 CCTTTTAGGGCGTAGCTTAGCACTATATATAGATGTTATGGCAAACCCTATTCTGTAATT P F R A - L S T I Y R C Y G K P Y S V I L L G R S L A L Y I D V M A N P I L - F F - G V A - H Y I - M L W Q T L F C N . . . . . . 90725 CTGTTTTTTGCCTCTCCATAATAAAACTGCTCCCCCTCTTCCTGTGGACGTAGCCAATTT L F F A S P - - N C S P S S C G R S Q F C F L P L H N K T A P P L P V D V A N L S V F C L S I I K L L P L F L W T - P I . . . . . . 90785 ATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATC I G E P R K S V V L F F A F I F S R I I L V N H V N L L S C F S H L Y F L V L S Y W - T T - I C C L V F R I Y I F S Y Y . . . . : . . 90845 TCGAATTCCTCATAACATACTTGTATAGTCAGAA : ATATAAAATATCGAGAGAAATAACCT S N S S - H T C I V R : N I K Y R E K - P R I P H N I L V - S E : I - N I E R N N L L E F L I T Y L Y S Q K : Y K I S R E I T . : . . . . : . 92341 CACAAAATT : TAAATAAAACTCTCAGAGCCCTTAGGATTATATT : TAAATTTTATATAGTAT H K I : - I K L S E P L G L Y : L N F I - Y T K F : K - N S Q S P - D Y I : - I L Y S I S Q N : L N K T L R A L R I I F : K F Y I V . . : . . : . . 92566 ATTATATCACTTTCTTT : CTCTCCTGACAGTTCAATG : TACGTTAGCATGTTTGATAGATTC I I S L S F : S P D S S M : Y V S M F D R F L Y H F L : S L L T V Q C : T L A C L I D S Y Y I T F F : L S - Q F N : V R - H V - - I . . . . . . : 93228 TAATAGTTAAATAATGAAATAACTCTAAATATTTGTGCAATGATCAGAGGCGGAGCTAG : A - - L N N E I T L N I C A M I R G G A R : N S - I M K - L - I F V Q - S E A E L : E L I V K - - N N S K Y L C N D Q R R S - : . . : . . : : . . 94389 AACTCAAACAA : TTATCACTGCATTATTATTGA : GTTTTTAA : TCATTATTAAAATCAATTTT N S N N : Y H C I I I E : F L : I I I K I N F T Q T : I I T A L L L : S F - : S L L K S I L K L K Q : L S L H Y Y - : V F N : H Y - N Q F . . 96971 ATCAAAATAATATATTT I K I I Y S K - Y I Y Q N N I F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (90862 91282,91600 92275) SCR (e 0.914 d 0.999 a 0.981,e 0.886) Exon 1 90862 91282 ( 421 n); score: 0.914 Intron 1 91283 91599 ( 317 n); Pd: 0.999 Pa: 0.981 Exon 2 91600 92275 ( 676 n); score: 0.886 PGS (90862 91282,91600 91886) SGN-E378935+ PGS (90862 91282,91600 91702) SGN-E206806+ PGS (90880 91282,91600 91667) SGN-E205363+ PGS (91239 91282,91600 92231) SGN-E378974- PGS (91722 92275) SGN-E551573+ PGS (91916 92170) SGN-E234103- PGS (91919 92170) SGN-E234174- 3-phase translation of AGS-2 (+strand): . . . . . . 90862 TACTTGTATAGTCAGAAGGGTTTACCAATGAATGTTAGTGAACAGACGTTTTTGACTATT Y L Y S Q K G L P M N V S E Q T F L T I T C I V R R V Y Q - M L V N R R F - L F L V - S E G F T N E C - - T D V F D Y . . . . . . 90922 CTTAATGTGATGACAAGCATGTTATGGGGTGGCACAGTGAAGGGTGAGGAAAGAGCTAGC L N V M T S M L W G G T V K G E E R A S L M - - Q A C Y G V A Q - R V R K E L A S - C D D K H V M G W H S E G - G K S - . . . . . . 90982 GTTGGAGCTGAGTTTAGGCATGTTGTGACTGGGATAGCTCAGTTGGTCAGTATTCCCAAT V G A E F R H V V T G I A Q L V S I P N L E L S L G M L - L G - L S W S V F P I R W S - V - A C C D W D S S V G Q Y S Q . . . . . . 91042 CTTACCGATTTTTACCCGGGCTTGGCCTGGTTTGATTTCCAAGGTATTACAAAGAAGATG L T D F Y P G L A W F D F Q G I T K K M L P I F T R A W P G L I S K V L Q R R - S Y R F L P G L G L V - F P R Y Y K E D . . . . . . 91102 AAGGTGTTGGCAAAGAGATTTGATAAGATATTTGAGGGAATAATTGATCAAAGACAAAAA K V L A K R F D K I F E G I I D Q R Q K R C W Q R D L I R Y L R E - L I K D K N E G V G K E I - - D I - G N N - S K T K . . . . . . 91162 TTGGACAGAAATGGTGTTGGCCAAGATAGCAAAGACTTTTTTGCAAGTTTTGTTAAAGTT L D R N G V G Q D S K D F F A S F V K V W T E M V L A K I A K T F L Q V L L K L I G Q K W C W P R - Q R L F C K F C - S . . . . . . 91222 GAAAGATGAAGCAGATCCCAAAATACCTCTGACCATGACTGACATCAAAGCCTTACTTAT E R - S R S Q N T S D H D - H Q S L T Y K D E A D P K I P L T M T D I K A L L M - K M K Q I P K Y L - P - L T S K P Y L . : . . . . . 91282 G : GAAATGGTTCTCGGTGGAACTGGCTCAACCTCCAATACGATTGAGTTTGCCATGGCTGA : G N G S R W N W L N L Q Y D - V C H G - : E M V L G G T G S T S N T I E F A M A E W : K W F S V E L A Q P P I R L S L P W L . . . . . . 91659 AATTATGAACAAACCAGATGTCCTGAGAAAATTACAACAAGAAGTAGATACAGTTGTGGG N Y E Q T R C P E K I T T R S R Y S C G I M N K P D V L R K L Q Q E V D T V V G K L - T N Q M S - E N Y N K K - I Q L W . . . . . . 91719 AAAAGATAATATTGTAGAAGAGTCTCATATTCAGCAATTACCATGTATCTATGCAGTGAT K R - Y C R R V S Y S A I T M Y L C S D K D N I V E E S H I Q Q L P C I Y A V M E K I I L - K S L I F S N Y H V S M Q - . . . . . . 91779 GAAAGAAGTATTGCGCATGCATCCAGCTACTCCACTATTGGTGCCACATTGTCCAAGTGA E R S I A H A S S Y S T I G A T L S K - K E V L R M H P A T P L L V P H C P S E - K K Y C A C I Q L L H Y W C H I V Q V . . . . . . 91839 GACAGTCACTGTTGGAGGATACACTGTTCCTGAAGGATCTCGTGTTTTCATAAATGTTTG D S H C W R I H C S - R I S C F H K C L T V T V G G Y T V P E G S R V F I N V W R Q S L L E D T L F L K D L V F S - M F . . . . . . 91899 GGCTATACAGAGAGATACTTCTATCTGGAAAAGTCCAACAGAGTTCTGTCCAGAGAGATT G Y T E R Y F Y L E K S N R V L S R E I A I Q R D T S I W K S P T E F C P E R F G L Y R E I L L S G K V Q Q S S V Q R D . . . . . . 91959 TTTGGAAAATAAATGGGACTATAGTGAAAATGATTTCAACTATTTCCCATTTGGTTCTGG F G K - M G L - - K - F Q L F P I W F W L E N K W D Y S E N D F N Y F P F G S G F W K I N G T I V K M I S T I S H L V L . . . . . . 92019 AAGAAGAATCTGTGCGGGGATAGCCATGGCAGACAGGATGTTCACGTATTCACTGGCTTC K K N L C G D S H G R Q D V H V F T G F R R I C A G I A M A D R M F T Y S L A S E E E S V R G - P W Q T G C S R I H W L . . . . . . 92079 GATCATTCATTCTTTCGACTGGAAATTGCCCCAAGGAGAAACATTGGACGTTACGGAGAA D H S F F R L E I A P R R N I G R Y G E I I H S F D W K L P Q G E T L D V T E K R S F I L S T G N C P K E K H W T L R R . . . . . . 92139 GTTCAGTAGTATTTTGAAGAAGAAAATACCTCTGGTGGCTTTACCTACTCCAAGATAGTC V Q - Y F E E E N T S G G F T Y S K I V F S S I L K K K I P L V A L P T P R - S S S V V F - R R K Y L W W L Y L L Q D S . . . . . . 92199 CAATTCAACACTGTATGAGTAAGATAAAAATGTGTTAGTAGAGAGCCGTGTTCTGTATGA Q F N T V - V R - K C V S R E P C S V - N S T L Y E - D K N V L V E S R V L Y D P I Q H C M S K I K M C - - R A V F C M . . 92259 TGATTTTATCTTTTGTA - F Y L L D F I F C M I L S F V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-17_AGS-2_PPS_1 (91145 91282,91600 92196) (frame '2'; 732 bp, 244 residues) 1 LIKDKNWTEM VLAKIAKTFL QVLLKLKDEA DPKIPLTMTD IKALLMEMVL GGTGSTSNTI 61 EFAMAEIMNK PDVLRKLQQE VDTVVGKDNI VEESHIQQLP CIYAVMKEVL RMHPATPLLV 121 PHCPSETVTV GGYTVPEGSR VFINVWAIQR DTSIWKSPTE FCPERFLENK WDYSENDFNY 181 FPFGSGRRIC AGIAMADRMF TYSLASIIHS FDWKLPQGET LDVTEKFSSI LKKKIPLVAL 241 PTPR- AGS-3 (94257 95201,95634 96264,96309 96362) SCR (e 0.929 d 0.999 a 0.997,e 0.930 d 0.000 a 0.000,e 0.870) Exon 1 94257 95201 ( 945 n); score: 0.929 Intron 1 95202 95633 ( 432 n); Pd: 0.999 Pa: 0.997 Exon 2 95634 96264 ( 631 n); score: 0.930 Intron 2 96265 96308 ( 44 n); Pd: 0.000 Pa: 0.000 Exon 3 96309 96362 ( 54 n); score: 0.870 PGS (94257 95069) SGN-E553649+ PGS (94263 95035) SGN-E554337+ PGS (94424 94909) SGN-E318770+ PGS (94767 95201,95634 95920) SGN-E378935+ PGS (94767 95201,95634 95736) SGN-E206806+ PGS (95158 95201,95634 96264,96309 96362) SGN-E378974- PGS (96018 96250) SGN-E243190+ 3-phase translation of AGS-3 (+strand): . . . . . . 94257 ATGTCTCTCAAATTCTTCAAACCCCTTTTTGATTCTTTTCCATGGCCCCTACAACAACTC M S L K F F K P L F D S F P W P L Q Q L C L S N S S N P F L I L F H G P Y N N S V S Q I L Q T P F - F F S M A P T T T . . . . . . 94317 AATGTTGAGCAAAAGGGTGTGTTTTTCTCCTGTTTTCTTGGGTTCTTAGCTTTACTTTGG N V E Q K G V F F S C F L G F L A L L W M L S K R V C F S P V F L G S - L Y F G Q C - A K G C V F L L F S W V L S F T L . . . . . . 94377 TGTTTCATCAGAAACTCAAACAAGGGATTGCCACCAGGGCCTGAAGCTTTGCCCTTGATA C F I R N S N K G L P P G P E A L P L I V S S E T Q T R D C H Q G L K L C P - - V F H Q K L K Q G I A T R A - S F A L D . . . . . . 94437 GGTAATCTCCATTCTCTTGATCCTGAACTTCACACCTATTTTGCATCTCTGTCCAAAACA G N L H S L D P E L H T Y F A S L S K T V I S I L L I L N F T P I L H L C P K H R - S P F S - S - T S H L F C I S V Q N . . . . . . 94497 TATGGCCCCATTTGTAGAATCTGGCTTGGTAAAAAAATTGGGATTATTATTAGTTCGCCT Y G P I C R I W L G K K I G I I I S S P M A P F V E S G L V K K L G L L L V R L I W P H L - N L A W - K N W D Y Y - F A . . . . . . 94557 GCTTTAGCTCGCGAGGTTCTTAAGGATAAAGATACTATTTTTGCAAACAGAGATGTGTCT A L A R E V L K D K D T I F A N R D V S L - L A R F L R I K I L F L Q T E M C L C F S S R G S - G - R Y Y F C K Q R C V . . . . . . 94617 GCTGCTGGAAGAGAATTTTCATATGGTATCAATGACTTACTTTGGAGTCCTTATGGACCG A A G R E F S Y G I N D L L W S P Y G P L L E E N F H M V S M T Y F G V L M D R C C W K R I F I W Y Q - L T L E S L W T . . . . . . 94677 AAATGGCGAATGTTGAGGAAGCTTTGTGTTCGCGATATGCTTAGTTCTTCTAGTATAGAT K W R M L R K L C V R D M L S S S S I D N G E C - G S F V F A I C L V L L V - I E M A N V E E A L C S R Y A - F F - Y R . . . . . . 94737 TCTGTTTATGGACTAAGGAGAAGGGAGCTTAGACAATCGATCAATTACTTGTATAGTCAG S V Y G L R R R E L R Q S I N Y L Y S Q L F M D - G E G S L D N R S I T C I V R F C L W T K E K G A - T I D Q L L V - S . . . . . . 94797 AAGGGTTTACCAGTGAATATCGGTGAACAGATGTTCTTGACTTTGCTTAATGTGATAACA K G L P V N I G E Q M F L T L L N V I T R V Y Q - I S V N R C S - L C L M - - Q E G F T S E Y R - T D V L D F A - C D N . . . . . . 94857 AGTATGTTATGGGGTGGGACGATGAAGGGTGAGGAAAGAGCTAGTCTTGGAGCTGAGTTT S M L W G G T M K G E E R A S L G A E F V C Y G V G R - R V R K E L V L E L S L K Y V M G W D D E G - G K S - S W S - V . . . . . . 94917 AGGAATGTTGTAACTGAGATAGTTGATTTGGTCAGTATTCCCAATCTTTCCGATTTTTAC R N V V T E I V D L V S I P N L S D F Y G M L - L R - L I W S V F P I F P I F T - E C C N - D S - F G Q Y S Q S F R F L . . . . . . 94977 CCGGGCTTGACCTGGTTTGATTTCCAGGGTGTTATAAAGAAGATGAAAGTGGTTCTAAAA P G L T W F D F Q G V I K K M K V V L K R A - P G L I S R V L - R R - K W F - K P G L D L V - F P G C Y K E D E S G S K . . . . . . 95037 AGATTTGATAAGCTATTTGAAAGCATGATTGATCAAAGACAAAAATTGGACAGAAATGGA R F D K L F E S M I D Q R Q K L D R N G D L I S Y L K A - L I K D K N W T E M E K I - - A I - K H D - S K T K I G Q K W . . . . . . 95097 GTTGGCCGAGAAAGCAAAAACTTTTTGCAAGTTCTGCTGAAGTTGAAAGATGTAGCAGAT V G R E S K N F L Q V L L K L K D V A D L A E K A K T F C K F C - S - K M - Q M S W P R K Q K L F A S S A E V E R C S R . . . . . : . 95157 GCCAAAATGCCTCTGACCATGACTGAAATCAAAGCCTTACTTATG : GATATGGTTGTCGCT A K M P L T M T E I K A L L M : D M V V A P K C L - P - L K S K P Y L W : I W L S L C Q N A S D H D - N Q S L T Y : G Y G C R . . . . . . 95649 GGAACTGACACAACCTCCAACGCGGTTGAGTTTGCCCTGGCTGAAATTTTGAACAAACCA G T D T T S N A V E F A L A E I L N K P E L T Q P P T R L S L P W L K F - T N Q W N - H N L Q R G - V C P G - N F E Q T . . . . . . 95709 GACGTCCTGAGGAAAGTACAACAAGAAGTAGATACAGTTGTGGGAAAAGATAATATAGTA D V L R K V Q Q E V D T V V G K D N I V T S - G K Y N K K - I Q L W E K I I - - R R P E E S T T R S R Y S C G K R - Y S . . . . . . 95769 GAAGAGTCTCATATTCAACAGTTACCGTATCTCTATGCAGTGATGAAAGAAGCGATGCGC E E S H I Q Q L P Y L Y A V M K E A M R K S L I F N S Y R I S M Q - - K K R C A R R V S Y S T V T V S L C S D E R S D A . . . . . . 95829 ATGCATCCAGCCCTCCCACTCTTGGCTCCTCATTCTCCTAGTGAGACAGTCACTGTTGGA M H P A L P L L A P H S P S E T V T V G C I Q P S H S W L L I L L V R Q S L L E H A S S P P T L G S S F S - - D S H C W . . . . . . 95889 GGATATACTGTTCCTAAAGGATCTTGTATTTTCGTAAATGTATGGGCTATACACAGAGAT G Y T V P K G S C I F V N V W A I H R D D I L F L K D L V F S - M Y G L Y T E I R I Y C S - R I L Y F R K C M G Y T Q R . . . . . . 95949 CCTTCTATCTGGAAAAATCCAACAGAGTTCCGTCCTGAGAGATTTTTGGACAATAAATGG P S I W K N P T E F R P E R F L D N K W L L S G K I Q Q S S V L R D F W T I N G S F Y L E K S N R V P S - E I F G Q - M . . . . . . 96009 GATTATAGTGGTAATGACTTCAACTATTTCCCATTTGGTTCTGGAAGAAGAATGTGTGCG D Y S G N D F N Y F P F G S G R R M C A I I V V M T S T I S H L V L E E E C V R G L - W - - L Q L F P I W F W K K N V C . . . . . . 96069 GGGACAGCCATGGCAGAGAGGATGTTCATGTATTCATTGGCTTCGCTCATCCATTCTTTC G T A M A E R M F M Y S L A S L I H S F G Q P W Q R G C S C I H W L R S S I L S G D S H G R E D V H V F I G F A H P F F . . . . . . 96129 GATTGGAAATTACCCGAAGGAGAGACGTTAGACCTTAAAGAGAAGTTTGGTATTACTTTG D W K L P E G E T L D L K E K F G I T L I G N Y P K E R R - T L K R S L V L L - R L E I T R R R D V R P - R E V W Y Y F . . . . . . 96189 AAGAAGAAAATACCTCTGGTGGCTATACCTACTCCAAGATTATGCAATCCAACATTGTAT K K K I P L V A I P T P R L C N P T L Y R R K Y L W W L Y L L Q D Y A I Q H C M E E E N T S G G Y T Y S K I M Q S N I V . . : . . . . 96249 GAGTAAGATTTTAAAG : TATCAGTGTTATGTGCTAATGTCTTTCAAAGACTAATATTAATG E - D F K : V S V L C A N V F Q R L I L M S K I L K : Y Q C Y V L M S F K D - Y - - - V R F - S : I S V M C - C L S K T N I N . 96353 AGCATTGAAT S I E A L N E H - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-17_AGS-3_PPS_1 (94257 95201,95634 96254) (frame '1'; 1563 bp, 521 residues) 1 MSLKFFKPLF DSFPWPLQQL NVEQKGVFFS CFLGFLALLW CFIRNSNKGL PPGPEALPLI 61 GNLHSLDPEL HTYFASLSKT YGPICRIWLG KKIGIIISSP ALAREVLKDK DTIFANRDVS 121 AAGREFSYGI NDLLWSPYGP KWRMLRKLCV RDMLSSSSID SVYGLRRREL RQSINYLYSQ 181 KGLPVNIGEQ MFLTLLNVIT SMLWGGTMKG EERASLGAEF RNVVTEIVDL VSIPNLSDFY 241 PGLTWFDFQG VIKKMKVVLK RFDKLFESMI DQRQKLDRNG VGRESKNFLQ VLLKLKDVAD 301 AKMPLTMTEI KALLMDMVVA GTDTTSNAVE FALAEILNKP DVLRKVQQEV DTVVGKDNIV 361 EESHIQQLPY LYAVMKEAMR MHPALPLLAP HSPSETVTVG GYTVPKGSCI FVNVWAIHRD 421 PSIWKNPTEF RPERFLDNKW DYSGNDFNYF PFGSGRRMCA GTAMAERMFM YSLASLIHSF 481 DWKLPEGETL DLKEKFGITL KKKIPLVAIP TPRLCNPTLY E- AGS-4 (95958 96250,97507 97611,98535 98568,99004 99024,99545 100489,101065 101729) SCR (e 0.853 d 0.744 a 0.145,e 0.590 d 0.000 a 0.406,e 0.456 d 0.000 a 0.332,e 0.643 d 0.000 a 0.000,e 0.903 d 0.997 a 0.997,e 0.866) Exon 1 95958 96250 ( 293 n); score: 0.853 Intron 1 96251 97506 (1256 n); Pd: 0.744 Pa: 0.145 Exon 2 97507 97611 ( 105 n); score: 0.590 Intron 2 97612 98534 ( 923 n); Pd: 0.000 Pa: 0.406 Exon 3 98535 98568 ( 34 n); score: 0.456 Intron 3 98569 99003 ( 435 n); Pd: 0.000 Pa: 0.332 Exon 4 99004 99024 ( 21 n); score: 0.643 Intron 4 99025 99544 ( 520 n); Pd: 0.000 Pa: 0.000 Exon 5 99545 100489 ( 945 n); score: 0.903 Intron 5 100490 101064 ( 575 n); Pd: 0.997 Pa: 0.997 Exon 6 101065 101729 ( 665 n); score: 0.866 PGS (95958 96250,97507 97611,98535 98568,99004 99024,99545 99688) SGN-E320419+ PGS (99545 100357) SGN-E553649+ PGS (99551 100322) SGN-E554337+ PGS (99712 100197) SGN-E318770+ PGS (100055 100489,101065 101351) SGN-E378935+ PGS (100055 100489,101065 101166) SGN-E206806+ PGS (100086 100489,101065 101132) SGN-E205363+ PGS (100443 100489,101065 101277) SGN-E554086+ PGS (100446 100489,101065 101696) SGN-E378974- PGS (101187 101729) SGN-E551573+ PGS (101381 101635) SGN-E234103- PGS (101384 101635) SGN-E234174- PGS (101449 101713) SGN-E243190+ 3-phase translation of AGS-4 (+strand): . . . . . . 95958 TGGAAAAATCCAACAGAGTTCCGTCCTGAGAGATTTTTGGACAATAAATGGGATTATAGT W K N P T E F R P E R F L D N K W D Y S G K I Q Q S S V L R D F W T I N G I I V E K S N R V P S - E I F G Q - M G L - . . . . . . 96018 GGTAATGACTTCAACTATTTCCCATTTGGTTCTGGAAGAAGAATGTGTGCGGGGACAGCC G N D F N Y F P F G S G R R M C A G T A V M T S T I S H L V L E E E C V R G Q P W - - L Q L F P I W F W K K N V C G D S . . . . . . 96078 ATGGCAGAGAGGATGTTCATGTATTCATTGGCTTCGCTCATCCATTCTTTCGATTGGAAA M A E R M F M Y S L A S L I H S F D W K W Q R G C S C I H W L R S S I L S I G N H G R E D V H V F I G F A H P F F R L E . . . . . . 96138 TTACCCGAAGGAGAGACGTTAGACCTTAAAGAGAAGTTTGGTATTACTTTGAAGAAGAAA L P E G E T L D L K E K F G I T L K K K Y P K E R R - T L K R S L V L L - R R K I T R R R D V R P - R E V W Y Y F E E E . . . . . . : 96198 ATACCTCTGGTGGCTATACCTACTCCAAGATTATGCAATCCAACATTGTATGA : TATTGCC I P L V A I P T P R L C N P T L Y D : I A Y L W W L Y L L Q D Y A I Q H C M : I L P N T S G G Y T Y S K I M Q S N I V - : Y C . . . . . . 97514 AATGTATGAAAAGAGAGAGAAGTAGAAAATGATATATTTTTCAAGTGAATATATGTACAA N V - K E R E V E N D I F F K - I Y V Q M Y E K R E K - K M I Y F S S E Y M Y N Q C M K R E R S R K - Y I F Q V N I C T . . . . : . . 97574 TACATATAGATATATATATATATCTTAATAGTGGAAAA : TTGATGTTATCCTCTCAAATTG Y I - I Y I Y I L I V E N : - C Y P L K L T Y R Y I Y I S - - W K : I D V I L S N C I H I D I Y I Y L N S G K : L M L S S Q I . . : . . : . . 98557 TTGCTTTCTCTT : AATTTTCTTTCGCTTGATACA : ATGTCTCTCAAATTCTTCAAACCCCTT L L S L : N F L S L D T : M S L K F F K P L C F L L : I F F R L I Q : C L S N S S N P F V A F S : - F S F A - Y : N V S Q I L Q T P . . . . . . 99572 TTTGATTCTTTCCCATGGCTCCTTCAACAACTCAATGTGGAGCAAAATGGTGTGTTTTTC F D S F P W L L Q Q L N V E Q N G V F F L I L S H G S F N N S M W S K M V C F S F - F F P M A P S T T Q C G A K W C V F . . . . . . 99632 TTCTGTTTTCTTGGTTTTTTAGCTTTACTTTGGTTTTTCATCAGTAACTCGAACAAGGGT F C F L G F L A L L W F F I S N S N K G S V F L V F - L Y F G F S S V T R T R V L L F S W F F S F T L V F H Q - L E Q G . . . . . . 99692 CTGCCACCAGGGCCTAAAGCTTTGCCCTTGATAGGCAATCTCCATTCTCTTGATCCTGAA L P P G P K A L P L I G N L H S L D P E C H Q G L K L C P - - A I S I L L I L N S A T R A - S F A L D R Q S P F S - S - . . . . . . 99752 CTTCACACCTATTTTGCATCTCTGTCCAAAACTTATGGCCCCATTTGTAGAATCTGGCTT L H T Y F A S L S K T Y G P I C R I W L F T P I L H L C P K L M A P F V E S G L T S H L F C I S V Q N L W P H L - N L A . . . . . . 99812 GGTAAAAAACTTGGGATTATAATTACTTCACCAGAATTAGCTCGCGAGGTTCTAAAGGAT G K K L G I I I T S P E L A R E V L K D V K N L G L - L L H Q N - L A R F - R I W - K T W D Y N Y F T R I S S R G S K G . . . . . . 99872 AAAGATATCATTTTTTCAAACAGAGATGTCCCTGATGCTGGAAGAGAATTTTCATATGGT K D I I F S N R D V P D A G R E F S Y G K I S F F Q T E M S L M L E E N F H M V - R Y H F F K Q R C P - C W K R I F I W . . . . . . 99932 GGTAATAGCATACTTTGGACACCTTATGGACCGAAATGGCGCATGTTGAGGAAGGTTTGT G N S I L W T P Y G P K W R M L R K V C V I A Y F G H L M D R N G A C - G R F V W - - H T L D T L W T E M A H V E E G L . . . . . . 99992 GTTCGCGATATGCTTAGTTGTTCTACTTTAGATTCGGTTTATGCACTAAGGCAAAGGGAG V R D M L S C S T L D S V Y A L R Q R E F A I C L V V L L - I R F M H - G K G S C S R Y A - L F Y F R F G L C T K A K G . . . . . . 100052 CTTAGACAATCGATCAGTTACTTTTATAACAAGGCAGGATCCCCTGTGAATGTTGGTGAA L R Q S I S Y F Y N K A G S P V N V G E L D N R S V T F I T R Q D P L - M L V N A - T I D Q L L L - Q G R I P C E C W - . . . . . . 100112 CAGATGTTCTTGACTATTCTTAATGTGATTACAAGCATGTTATGGGGTGGTACAGTGAAG Q M F L T I L N V I T S M L W G G T V K R C S - L F L M - L Q A C Y G V V Q - R T D V L D Y S - C D Y K H V M G W Y S E . . . . . . 100172 GGTGAGGAAAGAGCTAGCCTTGGAGCTGAGTTTAGGTATGTTGTGACTGAGATAGCTTCA G E E R A S L G A E F R Y V V T E I A S V R K E L A L E L S L G M L - L R - L H G - G K S - P W S - V - V C C D - D S F . . . . . . 100232 TTGTGCAGTGTTCCCAATCTTTCCGATTTTTACCCAGGCTTGGCCTGGTTTGATTTCCAG L C S V P N L S D F Y P G L A W F D F Q C A V F P I F P I F T Q A W P G L I S R I V Q C S Q S F R F L P R L G L V - F P . . . . . . 100292 GGTGTTGCAAAGAAGATGAAGGTGCTGGTAAAAAGATTTGATAAGATATTTGAGAGCATA G V A K K M K V L V K R F D K I F E S I V L Q R R - R C W - K D L I R Y L R A - G C C K E D E G A G K K I - - D I - E H . . . . . . 100352 ATTAATCAAAGACAAAAATTGGACAGAAATGGTGTTGGCCAAGAAAGCAAAGACTTCTTG I N Q R Q K L D R N G V G Q E S K D F L L I K D K N W T E M V L A K K A K T S C N - S K T K I G Q K W C W P R K Q R L L . . . . . . 100412 CAAGTTTTGCTAAAGCTGAAAGATGAAGCAGATCCCAATATGCCTCTAACCATGATTGAA Q V L L K L K D E A D P N M P L T M I E K F C - S - K M K Q I P I C L - P - L K A S F A K A E R - S R S Q Y A S N H D - . . : . . . . 100472 ATCAAAGCCTTACTTATG : GATATGATTCTTGGTGGAACTGACAGTACCTCCAACACGATT I K A L L M : D M I L G G T D S T S N T I S K P Y L W : I - F L V E L T V P P T R L N Q S L T Y : G Y D S W W N - Q Y L Q H D . . . . . . 101107 GAGTTTGCGATGGCTGAAATTATGAACAAACCATACGTCCTGAGGAAATTACAAGAAGAA E F A M A E I M N K P Y V L R K L Q E E S L R W L K L - T N H T S - G N Y K K N - V C D G - N Y E Q T I R P E E I T R R . . . . . . 101167 CTGGAGACAGTTGTGGGAAAAGACAATATTGTGGATGAGTCTCATATTAAGAAATTACCA L E T V V G K D N I V D E S H I K K L P W R Q L W E K T I L W M S L I L R N Y H T G D S C G K R Q Y C G - V S Y - E I T . . . . . . 101227 TATCTTTATGCAGTTATGAAAGAAGTCTTGCGCATACATCCAACTTCTCCACTATTGGTG Y L Y A V M K E V L R I H P T S P L L V I F M Q L - K K S C A Y I Q L L H Y W C I S L C S Y E R S L A H T S N F S T I G . . . . . . 101287 CCGCGTTGTCCAAGTGAAACATGCACTGTCGGAGGATACACTGTTCCTAAAGGATCTTGT P R C P S E T C T V G G Y T V P K G S C R V V Q V K H A L S E D T L F L K D L V A A L S K - N M H C R R I H C S - R I L . . . . . . 101347 ATTTTCATTGATGTATGGGCTATACATAGAGATCCTTCTATATGGGAAAATCCAACAGAG I F I D V W A I H R D P S I W E N P T E F S L M Y G L Y I E I L L Y G K I Q Q S Y F H - C M G Y T - R S F Y M G K S N R . . . . . . 101407 TTCCTTCCAAAGAGATTTTTGGACAATAAATGGGATTATAGTGGAAATGATTTCAACTAT F L P K R F L D N K W D Y S G N D F N Y S F Q R D F W T I N G I I V E M I S T I V P S K E I F G Q - M G L - W K - F Q L . . . . . . 101467 TTCCCATTTGGTTCTGGCAGAAGAATCTGTGCGGGGATAGCCATGGCAGAGAAGATGGTC F P F G S G R R I C A G I A M A E K M V S H L V L A E E S V R G - P W Q R R W S F P I W F W Q K N L C G D S H G R E D G . . . . . . 101527 ATGTATTCACTTGCTTCACTCATTCATTCTTTCGACTGGAAATTGCCTGAAGGAGAGACA M Y S L A S L I H S F D W K L P E G E T C I H L L H S F I L S T G N C L K E R Q H V F T C F T H S F F R L E I A - R R D . . . . . . 101587 GTAGAAGTGACAGAGAATTTCGGTATTGTTATGAACAAGAAAATGCCTTTGGTGGCTATA V E V T E N F G I V M N K K M P L V A I - K - Q R I S V L L - T R K C L W W L Y S R S D R E F R Y C Y E Q E N A F G G Y . . . . . . 101647 CCTACTCCAAGATTGTCTAATCCAAAACTGTATGAGTAACATAAAAATGTGCTTGTAGAG P T P R L S N P K L Y E - H K N V L V E L L Q D C L I Q N C M S N I K M C L - R T Y S K I V - S K T V - V T - K C A C R . . . 101707 AATCGTGTTCTGTATGATGATTC N R V L Y D D I V F C M M I E S C S V - - F Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-17_AGS-4_PPS_1 (98539 98568,99004 99024,99545 100489,101065 101685) (frame '1'; 1614 bp, 538 residues) 1 CYPLKLLLSL NFLSLDTMSL KFFKPLFDSF PWLLQQLNVE QNGVFFFCFL GFLALLWFFI 61 SNSNKGLPPG PKALPLIGNL HSLDPELHTY FASLSKTYGP ICRIWLGKKL GIIITSPELA 121 REVLKDKDII FSNRDVPDAG REFSYGGNSI LWTPYGPKWR MLRKVCVRDM LSCSTLDSVY 181 ALRQRELRQS ISYFYNKAGS PVNVGEQMFL TILNVITSML WGGTVKGEER ASLGAEFRYV 241 VTEIASLCSV PNLSDFYPGL AWFDFQGVAK KMKVLVKRFD KIFESIINQR QKLDRNGVGQ 301 ESKDFLQVLL KLKDEADPNM PLTMIEIKAL LMDMILGGTD STSNTIEFAM AEIMNKPYVL 361 RKLQEELETV VGKDNIVDES HIKKLPYLYA VMKEVLRIHP TSPLLVPRCP SETCTVGGYT 421 VPKGSCIFID VWAIHRDPSI WENPTEFLPK RFLDNKWDYS GNDFNYFPFG SGRRICAGIA 481 MAEKMVMYSL ASLIHSFDWK LPEGETVEVT ENFGIVMNKK MPLVAIPTPR LSNPKLYE- >C08HBa0060C12.1+_PGL-17_AGS-4_PPS_2 (95958 96250,97507 97522) (frame '1'; 306 bp, 102 residues) 1 WKNPTEFRPE RFLDNKWDYS GNDFNYFPFG SGRRMCAGTA MAERMFMYSL ASLIHSFDWK 61 LPEGETLDLK EKFGITLKKK IPLVAIPTPR LCNPTLYDIA NV- PGL 18 (- strand): 102650 102347 AGS-1 (102650 102347) SCR (e 0.775) Exon 1 102650 102347 ( 304 n); score: 0.775 PGS (102650 102347) SGN-E313355+ PGS (102650 102347) SGN-E313356+ 3-phase translation of AGS-1 (-strand): . . . . . . 102650 ATTAGTTGAAGGGAAGTGTTTTTTTTTGTGGAGCTTTGGACTCAATTCTTGTCCAGAGTT I S - R E V F F F V E L W T Q F L S R V L V E G K C F F L W S F G L N S C P E L - L K G S V F F C G A L D S I L V Q S . . . . . . 102590 GTTGAGTTATACTTTGTGAAGGCTGTTGTATCCTGGAGGGGACAAGTCAAAGAGGACTAC V E L Y F V K A V V S W R G Q V K E D Y L S Y T L - R L L Y P G G D K S K R T T C - V I L C E G C C I L E G T S Q R G L . . . . . . 102530 TGCTGGACCGGTGAAAACATTTGCTGCAGTGGGCTTGAATCTCCTTAAAGAGAGCGAGAT C W T G E N I C C S G L E S P - R E R D A G P V K T F A A V G L N L L K E S E I L L D R - K H L L Q W A - I S L K R A R . . . . . . 102470 ATCTGCCCTCAGCCTGAAGAGATTAATTTTGTCATTTTATTTTCAATTGTAATCTTGCAA I C P Q P E E I N F V I L F S I V I L Q S A L S L K R L I L S F Y F Q L - S C N Y L P S A - R D - F C H F I F N C N L A . . . . . . 102410 TTTTATGATCTTGTAAGTTTTTTCACTAACACTAATTATAATCATAATAGAGTCAATTCA F Y D L V S F F T N T N Y N H N R V N S F M I L - V F S L T L I I I I I E S I Q I L - S C K F F H - H - L - S - - S Q F . 102350 AGAA R E K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 102347 TTCTTGAATTGACTCTATTATGATTATAATTAGTGTTAGTGAAAAAACTTACAAGATCAT F L N - L Y Y D Y N - C - - K N L Q D H S - I D S I M I I I S V S E K T Y K I I L E L T L L - L - L V L V K K L T R S . . . . . . 102407 AAAATTGCAAGATTACAATTGAAAATAAAATGACAAAATTAATCTCTTCAGGCTGAGGGC K I A R L Q L K I K - Q N - S L Q A E G K L Q D Y N - K - N D K I N L F R L R A - N C K I T I E N K M T K L I S S G - G . . . . . . 102467 AGATATCTCGCTCTCTTTAAGGAGATTCAAGCCCACTGCAGCAAATGTTTTCACCGGTCC R Y L A L F K E I Q A H C S K C F H R S D I S L S L R R F K P T A A N V F T G P Q I S R S L - G D S S P L Q Q M F S P V . . . . . . 102527 AGCAGTAGTCCTCTTTGACTTGTCCCCTCCAGGATACAACAGCCTTCACAAAGTATAACT S S S P L - L V P S R I Q Q P S Q S I T A V V L F D L S P P G Y N S L H K V - L Q Q - S S L T C P L Q D T T A F T K Y N . . . . . . 102587 CAACAACTCTGGACAAGAATTGAGTCCAAAGCTCCACAAAAAAAAACACTTCCCTTCAAC Q Q L W T R I E S K A P Q K K T L P F N N N S G Q E L S P K L H K K K H F P S T S T T L D K N - V Q S S T K K N T S L Q . 102647 TAAT - N L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 19 (+ strand): 103483 108669 AGS-1 (103483 104427,105115 105731,105921 105944,105993 106040,106346 106386,107006 107973) SCR (e 1.000 d 0.998 a 0.999,e 0.864 d 0.324 a 0.000,e 0.625 d 0.900 a 0.000,e 0.531 d 0.000 a 0.000,e 0.622 d 0.000 a 0.000,e 0.874) Exon 1 103483 104427 ( 945 n); score: 1.000 Intron 1 104428 105114 ( 687 n); Pd: 0.998 Pa: 0.999 Exon 2 105115 105731 ( 617 n); score: 0.864 Intron 2 105732 105920 ( 189 n); Pd: 0.324 Pa: 0.000 Exon 3 105921 105944 ( 24 n); score: 0.625 Intron 3 105945 105992 ( 48 n); Pd: 0.900 Pa: 0.000 Exon 4 105993 106040 ( 48 n); score: 0.531 Intron 4 106041 106345 ( 305 n); Pd: 0.000 Pa: 0.000 Exon 5 106346 106386 ( 41 n); score: 0.622 Intron 5 106387 107005 ( 619 n); Pd: 0.000 Pa: 0.000 Exon 6 107006 107973 ( 968 n); score: 0.874 PGS (103483 104296) SGN-E553649+ PGS (103650 104135) SGN-E318770+ PGS (103993 104427,105115 105401) SGN-E378935+ PGS (103993 104427,105115 105216) SGN-E206806+ PGS (104026 104427,105115 105181) SGN-E205363+ PGS (104381 104427,105115 105327) SGN-E554086+ PGS (104384 104427,105115 105731) SGN-E378974- PGS (105431 105689) SGN-E234103- PGS (105434 105689) SGN-E234174- PGS (105439 105731,105921 105944,105993 106040,106346 106386,107006 107167) SGN-E320419+ PGS (107042 107856) SGN-E553649+ PGS (107048 107820) SGN-E554337+ PGS (107209 107695) SGN-E318770+ PGS (107552 107973) SGN-E378935+ PGS (107552 107973) SGN-E206806+ 3-phase translation of AGS-1 (+strand): . . . . . . 103483 ATGTCTCTCAAATTCTTCAAACCCCTTTTTGATTCTTTCCCATGGCCCCTTCAACAACTC M S L K F F K P L F D S F P W P L Q Q L C L S N S S N P F L I L S H G P F N N S V S Q I L Q T P F - F F P M A P S T T . . . . . . 103543 AATGTTGAGCAACAGGCTATGTTTTTCGTCTGTTTTCTTGGTTTTTTAGCTTTACTTTGG N V E Q Q A M F F V C F L G F L A L L W M L S N R L C F S S V F L V F - L Y F G Q C - A T G Y V F R L F S W F F S F T L . . . . . . 103603 TTTTTCATCAGTAACTCGAACAAAGGTCTGCCACCAGGGCCTAAAGCTTTGCCCTTGATA F F I S N S N K G L P P G P K A L P L I F S S V T R T K V C H Q G L K L C P - - V F H Q - L E Q R S A T R A - S F A L D . . . . . . 103663 GGTAATCTCCATTCTCTTGATCCTGAACTTCACACCTATTTTGCATCTCTGTCCCAAATT G N L H S L D P E L H T Y F A S L S Q I V I S I L L I L N F T P I L H L C P K F R - S P F S - S - T S H L F C I S V P N . . . . . . 103723 TATGGCCCCATTTGTAGAATCTGGCTTGGTCAAAAACTTGGGATTATTATTACTTCACCA Y G P I C R I W L G Q K L G I I I T S P M A P F V E S G L V K N L G L L L L H Q L W P H L - N L A W S K T W D Y Y Y F T . . . . . . 103783 GAATTAGCTCGCGACGTTCTAAAGGATAAAGATATTATTTTTGCTAACAGAGACGTGCCT E L A R D V L K D K D I I F A N R D V P N - L A T F - R I K I L F L L T E T C L R I S S R R S K G - R Y Y F C - Q R R A . . . . . . 103843 GCTGCTGCAGTAGAAATTTCATATGGTTGCAATGACATACTTTGGAATTCTTATGGACCA A A A V E I S Y G C N D I L W N S Y G P L L Q - K F H M V A M T Y F G I L M D H C C C S R N F I W L Q - H T L E F L W T . . . . . . 103903 CAATGGCGAATGATGAGAAAGCTTTGTGTTCGCGATATGCTTAGTTGTTCTACTTTAGAT Q W R M M R K L C V R D M L S C S T L D N G E - - E S F V F A I C L V V L L - I T M A N D E K A L C S R Y A - L F Y F R . . . . . . 103963 TCTGTTTGTGCACTAAGGCGAAGGGAGCTTAGACAATCGATGAATTACTTCTATAGTAAG S V C A L R R R E L R Q S M N Y F Y S K L F V H - G E G S L D N R - I T S I V R F C L C T K A K G A - T I D E L L L - - . . . . . . 104023 AAGGGTTTACCAGTGAACGTTGGTGAGCAGATGTTCTTGACTGTGTTTAATGTGATTACA K G L P V N V G E Q M F L T V F N V I T R V Y Q - T L V S R C S - L C L M - L Q E G F T S E R W - A D V L D C V - C D Y . . . . . . 104083 AGCATGTTATGGGGTAGCACAGTGAAGGGTGAGGAAAGAGCTAATCTTGGGGCAGAGTTT S M L W G S T V K G E E R A N L G A E F A C Y G V A Q - R V R K E L I L G Q S L K H V M G - H S E G - G K S - S W G R V . . . . . . 104143 AGGTATGTTGTGAGTGAGATGGCTGCGCTGTGCAGTATTCCCAATCTTTCCGATTTCTAC R Y V V S E M A A L C S I P N L S D F Y G M L - V R W L R C A V F P I F P I S T - V C C E - D G C A V Q Y S Q S F R F L . . . . . . 104203 CCAGGTTTGGCCTGGTTTGATTTCCAGGGTGTTACAAAGAAGATGAAGCTGCTGTTAAAG P G L A W F D F Q G V T K K M K L L L K Q V W P G L I S R V L Q R R - S C C - R P R F G L V - F P G C Y K E D E A A V K . . . . . . 104263 AGATTTGAGAAGATATTTGATAGCATGATTGATGAAAGAAAAAAATTGGATAGAAATGGT R F E K I F D S M I D E R K K L D R N G D L R R Y L I A - L M K E K N W I E M V E I - E D I - - H D - - K K K I G - K W . . . . . . 104323 GTTGGCCAAGAAATCAAAGACTTTTTGCAAGTTTTGCTGAAGTTGAAAGATGAAGCAGAT V G Q E I K D F L Q V L L K L K D E A D L A K K S K T F C K F C - S - K M K Q I C W P R N Q R L F A S F A E V E R - S R . . . . . : . 104383 CCCAAAATGCCTATGACCATGACTGAAATCAAAGCCTTACTTATG : GATATGATTGTTGGT P K M P M T M T E I K A L L M : D M I V G P K C L - P - L K S K P Y L W : I - L L V S Q N A Y D H D - N Q S L T Y : G Y D C W . . . . . . 105130 GGAACTGATAGTACCTCCAACGCGATTGAGTTTGCGATGGCTGAAATTATGATTAAACCA G T D S T S N A I E F A M A E I M I K P E L I V P P T R L S L R W L K L - L N Q W N - - Y L Q R D - V C D G - N Y D - T . . . . . . 105190 GACATCCTGAGGAAATTACAAGAAGAAATAGAAACAGTTGTGGGAAAGGATAATATTGTG D I L R K L Q E E I E T V V G K D N I V T S - G N Y K K K - K Q L W E R I I L W R H P E E I T R R N R N S C G K G - Y C . . . . . . 105250 GAAGAGTCTCATATTAAGCAATTACCATATCTCTATGCAGTTTTTAAAGAAGTATTGCGT E E S H I K Q L P Y L Y A V F K E V L R K S L I L S N Y H I S M Q F L K K Y C V G R V S Y - A I T I S L C S F - R S I A . . . . . . 105310 TTACATCCACCTGCTCCACTATTGGCACCACATTCTCCTAGTGAAACATGTACTGTGGGA L H P P A P L L A P H S P S E T C T V G Y I H L L H Y W H H I L L V K H V L W E F T S T C S T I G T T F S - - N M Y C G . . . . . . 105370 GGATACACTGTTCCTAAAGGATGTTCTATTTTCATAAACGTATGGGCTATACAGAGAGAT G Y T V P K G C S I F I N V W A I Q R D D T L F L K D V L F S - T Y G L Y R E I R I H C S - R M F Y F H K R M G Y T E R . . . . . . 105430 CCTTCTATATGGAAAAATCCAACTGAGTTCCGTCCAGAGAGATTTTTGGACGATAAATGC P S I W K N P T E F R P E R F L D D K C L L Y G K I Q L S S V Q R D F W T I N A S F Y M E K S N - V P S R E I F G R - M . . . . . . 105490 GATTGTAGTGGAAATGATTTCAACTATCTCCCATTTGGTTCTGGAAGAAGACTGTGCGCG D C S G N D F N Y L P F G S G R R L C A I V V E M I S T I S H L V L E E D C A R R L - W K - F Q L S P I W F W K K T V R . . . . . . 105550 GGGATAGGCATGGCAGAGAGGATGTTCATGTATTCACTTGCTTCGCTCATTCATTCTTTC G I G M A E R M F M Y S L A S L I H S F G - A W Q R G C S C I H L L R S F I L S G D R H G R E D V H V F T C F A H S F F . . . . . . 105610 GACTGGAAATTGCCAGAAGGAGAGACGTTAGACCTCACAGAGAAGTTTGGGATTGTTCTG D W K L P E G E T L D L T E K F G I V L T G N C Q K E R R - T S Q R S L G L F - R L E I A R R R D V R P H R E V W D C S . . . . . . 105670 AAGAAGAAAATGCCTCTGGTGGCTATACCTACTCCAAGATTGTCTGATCCAATACTCTAT K K K M P L V A I P T P R L S D P I L Y R R K C L W W L Y L L Q D C L I Q Y S M E E E N A S G G Y T Y S K I V - S N T L . : . . : . . . 105730 GA : TACTAATCAGGTTGCACAAAATGA : CTCTTCTTTTCATTTAATTTAACAAATGCCCTTT D : T N Q V A Q N D : S S F H L I - Q M P F : I L I R L H K M : T L L F I - F N K C P F - : Y - S G C T K - : L F F S F N L T N A L . . : . . . . : 106027 TTAGCAACACTTAA : TAGCCAAGTTAAATTGGTAAATGGGATGAACCCCACTGTAT : CTTTG L A T L N : S Q V K L V N G M N P T V : S L - Q H L : I A K L N W - M G - T P L Y : L C F S N T - : - P S - I G K W D E P H C I : F . . . . . . 107011 CTTCTTCCAATTTTTTCATTTCCCTCAAGTAATGTCTCTCAAATTCTTCAAACCCCTTTT L L P I F S F P S S N V S Q I L Q T P F F F Q F F H F P Q V M S L K F F K P L L A S S N F F I S L K - C L S N S S N P F . . . . . . 107071 GGATTCTTTCCCATGGCGTCTTCAAGAACTCAATCTTGAGCAAAAGGGTGTGTTTTTCTC G F F P M A S S R T Q S - A K G C V F L D S F P W R L Q E L N L E Q K G V F F S W I L S H G V F K N S I L S K R V C F S . . . . . . 107131 CTGTTTTCTTGGGTTTTTAGCTTTACTCTGGTGTTTCATCAGTAACTCAAACAAGAGATT L F S W V F S F T L V F H Q - L K Q E I C F L G F L A L L W C F I S N S N K R L P V F L G F - L Y S G V S S V T Q T R D . . . . . . 107191 GCCACCAGGGCCTAAAGCTTTGCCCTTGATAGATAATCTTCATTCTCTTGATCCTCAACT A T R A - S F A L D R - S S F S - S S T P P G P K A L P L I D N L H S L D P Q L C H Q G L K L C P - - I I F I L L I L N . . . . . . 107251 TCACACCTATTTTGCATCTCTTTCCCAAACTTATGGCCCCATTTGTAGAATCTGGCTTGG S H L F C I S F P N L W P H L - N L A W H T Y F A S L S Q T Y G P I C R I W L G F T P I L H L F P K L M A P F V E S G L . . . . . . 107311 TAAAACACTTGGGATTATTATTACTTCTCCTGCTTTAGCTCGTGAGGTTCGTAAGGGTAA - N T W D Y Y Y F S C F S S - G S - G - K T L G I I I T S P A L A R E V R K G K V K H L G L L L L L L L - L V R F V R V . . . . . . 107371 AGATACCATTTTTGCTAACAGAGATGTCCCTGCTGCTGGAAGCGAATTTTCATATGGTGG R Y H F C - Q R C P C C W K R I F I W W D T I F A N R D V P A A G S E F S Y G G K I P F L L T E M S L L L E A N F H M V . . . . . . 107431 CAATAACATACTTTGGACTCCTTATGGGCCGAAATGGTGCATGTTGAGGAAAATTTGTGT Q - H T L D S L W A E M V H V E E N L C N N I L W T P Y G P K W C M L R K I C V A I T Y F G L L M G R N G A C - G K F V . . . . . . 107491 TCGCGATATACTTAGTTCTTCTACTTTAGATTCTGTTTATGCACTAAGGAAAAAGGAGCT S R Y T - F F Y F R F C L C T K E K G A R D I L S S S T L D S V Y A L R K K E L F A I Y L V L L L - I L F M H - G K R S . . . . . . 107551 TAGACAATCAATCAATTACTTTCTATAATAAGAAGGGTTTACCAGTGAATATTGGTGAAC - T I N Q L L S I I R R V Y Q - I L V N R Q S I N Y F L - - E G F T S E Y W - T L D N Q S I T F Y N K K G L P V N I G E . . . . . . 107611 AGATGTTCTTGACTGTGCTTAATGTGATGACAAGCATGTTATGGGGTGGCACAGTCAAGG R C S - L C L M - - Q A C Y G V A Q S R D V L D C A - C D D K H V M G W H S Q G Q M F L T V L N V M T S M L W G G T V K . . . . . . 107671 GTGAGGAAGGAGCTAGCCTCGGAGCTGAGTTTAGGCATGTTGTGACTGAGATAGCTGCGT V R K E L A S E L S L G M L - L R - L R - G R S - P R S - V - A C C D - D S C V G E E G A S L G A E F R H V V T E I A A . . . . . . 107731 TGTGCAGTATTCCCAATCTTTCCGATTTTTACCCAGGCTTGGCTTGGTTTGATTTCCAGG C A V F P I F P I F T Q A W L G L I S R V Q Y S Q S F R F L P R L G L V - F P G L C S I P N L S D F Y P G L A W F D F Q . . . . . . 107791 GTGTTACAAAGAAGATGAAGGTGTTGGCAAAGATATTTGAGAGCATAATTGATCAAAGAC V L Q R R - R C W Q R Y L R A - L I K D C Y K E D E G V G K D I - E H N - S K T G V T K K M K V L A K I F E S I I D Q R . . . . . . 107851 AAAAATTGGACAGAAATGGTGTTGACCAAGAAACCAAAGACTTTTTGCAAGTTTTGCTAA K N W T E M V L T K K P K T F C K F C - K I G Q K W C - P R N Q R L F A S F A K Q K L D R N G V D Q E T K D F L Q V L L . . . . . . 107911 AGTTGAAAGATGAAGCAGATTCCAAAATACCTGACCATGACTGAAATCAAAGCCTTACTT S - K M K Q I P K Y L T M T E I K A L L V E R - S R F Q N T - P - L K S K P Y L K L K D E A D S K I P D H D - N Q S L T . 107971 ATG M Y Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-19_AGS-1_PPS_1 (103483 104427,105115 105731,105921 105944,105993 106014) (frame '1'; 1605 bp, 535 residues) 1 MSLKFFKPLF DSFPWPLQQL NVEQQAMFFV CFLGFLALLW FFISNSNKGL PPGPKALPLI 61 GNLHSLDPEL HTYFASLSQI YGPICRIWLG QKLGIIITSP ELARDVLKDK DIIFANRDVP 121 AAAVEISYGC NDILWNSYGP QWRMMRKLCV RDMLSCSTLD SVCALRRREL RQSMNYFYSK 181 KGLPVNVGEQ MFLTVFNVIT SMLWGSTVKG EERANLGAEF RYVVSEMAAL CSIPNLSDFY 241 PGLAWFDFQG VTKKMKLLLK RFEKIFDSMI DERKKLDRNG VGQEIKDFLQ VLLKLKDEAD 301 PKMPMTMTEI KALLMDMIVG GTDSTSNAIE FAMAEIMIKP DILRKLQEEI ETVVGKDNIV 361 EESHIKQLPY LYAVFKEVLR LHPPAPLLAP HSPSETCTVG GYTVPKGCSI FINVWAIQRD 421 PSIWKNPTEF RPERFLDDKC DCSGNDFNYL PFGSGRRLCA GIGMAERMFM YSLASLIHSF 481 DWKLPEGETL DLTEKFGIVL KKKMPLVAIP TPRLSDPILY DTNQVAQNDS SFHLI- >C08HBa0060C12.1+_PGL-19_AGS-1_PPS_2 (106375 106386,107006 107578) (frame '2'; 582 bp, 194 residues) 1 TPLYLCFFQF FHFPQVMSLK FFKPLLDSFP WRLQELNLEQ KGVFFSCFLG FLALLWCFIS 61 NSNKRLPPGP KALPLIDNLH SLDPQLHTYF ASLSQTYGPI CRIWLGKTLG IIITSPALAR 121 EVRKGKDTIF ANRDVPAAGS EFSYGGNNIL WTPYGPKWCM LRKICVRDIL SSSTLDSVYA 181 LRKKELRQSI NYFL- AGS-2 (105238 105620,108513 108669) SCR (e 0.898 d 0.000 a 0.000,e 0.854) Exon 1 105238 105620 ( 383 n); score: 0.898 Intron 1 105621 108512 (2892 n); Pd: 0.000 Pa: 0.000 Exon 2 108513 108669 ( 157 n); score: 0.854 PGS (105238 105620,108513 108669) SGN-E551573+ 3-phase translation of AGS-2 (+strand): . . . . . . 105238 GATAATATTGTGGAAGAGTCTCATATTAAGCAATTACCATATCTCTATGCAGTTTTTAAA D N I V E E S H I K Q L P Y L Y A V F K I I L W K S L I L S N Y H I S M Q F L K - Y C G R V S Y - A I T I S L C S F - . . . . . . 105298 GAAGTATTGCGTTTACATCCACCTGCTCCACTATTGGCACCACATTCTCCTAGTGAAACA E V L R L H P P A P L L A P H S P S E T K Y C V Y I H L L H Y W H H I L L V K H R S I A F T S T C S T I G T T F S - - N . . . . . . 105358 TGTACTGTGGGAGGATACACTGTTCCTAAAGGATGTTCTATTTTCATAAACGTATGGGCT C T V G G Y T V P K G C S I F I N V W A V L W E D T L F L K D V L F S - T Y G L M Y C G R I H C S - R M F Y F H K R M G . . . . . . 105418 ATACAGAGAGATCCTTCTATATGGAAAAATCCAACTGAGTTCCGTCCAGAGAGATTTTTG I Q R D P S I W K N P T E F R P E R F L Y R E I L L Y G K I Q L S S V Q R D F W Y T E R S F Y M E K S N - V P S R E I F . . . . . . 105478 GACGATAAATGCGATTGTAGTGGAAATGATTTCAACTATCTCCCATTTGGTTCTGGAAGA D D K C D C S G N D F N Y L P F G S G R T I N A I V V E M I S T I S H L V L E E G R - M R L - W K - F Q L S P I W F W K . . . . . . 105538 AGACTGTGCGCGGGGATAGGCATGGCAGAGAGGATGTTCATGTATTCACTTGCTTCGCTC R L C A G I G M A E R M F M Y S L A S L D C A R G - A W Q R G C S C I H L L R S K T V R G D R H G R E D V H V F T C F A . . . : . . . 105598 ATTCATTCTTTCGACTGGAAATT : GCCTGAAGGAGAGACATTAGACCTTACAGAAAAGTTT I H S F D W K L : P E G E T L D L T E K F F I L S T G N : C L K E R H - T L Q K S L H S F F R L E I : A - R R D I R P Y R K V . . . . . . 108550 GGTATTTTATTGAAGAAGAAAATACCTCTGGTGGCTATACCTACTCCAAGATTATCCAAT G I L L K K K I P L V A I P T P R L S N V F Y - R R K Y L W W L Y L L Q D Y P I W Y F I E E E N T S G G Y T Y S K I I Q . . . . . . 108610 CCAACACTGTATGAGTAAGATAAAAATGTGTTTGCAGAGTGTCGTGTTCTGTGTGATGAA P T L Y E - D K N V F A E C R V L C D E Q H C M S K I K M C L Q S V V F C V M S N T V - V R - K C V C R V S C S V - - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-19_AGS-2_PPS_1 (105238 105620,108513 108627) (frame '1'; 495 bp, 165 residues) 1 DNIVEESHIK QLPYLYAVFK EVLRLHPPAP LLAPHSPSET CTVGGYTVPK GCSIFINVWA 61 IQRDPSIWKN PTEFRPERFL DDKCDCSGND FNYLPFGSGR RLCAGIGMAE RMFMYSLASL 121 IHSFDWKLPE GETLDLTEKF GILLKKKIPL VAIPTPRLSN PTLYE- AGS-3 (105499 105763) SCR (e 1.000) Exon 1 105499 105763 ( 265 n); score: 1.000 PGS (105499 105763) SGN-E243190+ 3-phase translation of AGS-3 (+strand): . . . . . . 105499 GGAAATGATTTCAACTATCTCCCATTTGGTTCTGGAAGAAGACTGTGCGCGGGGATAGGC G N D F N Y L P F G S G R R L C A G I G E M I S T I S H L V L E E D C A R G - A K - F Q L S P I W F W K K T V R G D R . . . . . . 105559 ATGGCAGAGAGGATGTTCATGTATTCACTTGCTTCGCTCATTCATTCTTTCGACTGGAAA M A E R M F M Y S L A S L I H S F D W K W Q R G C S C I H L L R S F I L S T G N H G R E D V H V F T C F A H S F F R L E . . . . . . 105619 TTGCCAGAAGGAGAGACGTTAGACCTCACAGAGAAGTTTGGGATTGTTCTGAAGAAGAAA L P E G E T L D L T E K F G I V L K K K C Q K E R R - T S Q R S L G L F - R R K I A R R R D V R P H R E V W D C S E E E . . . . . . 105679 ATGCCTCTGGTGGCTATACCTACTCCAAGATTGTCTGATCCAATACTCTATGAGTAAGAT M P L V A I P T P R L S D P I L Y E - D C L W W L Y L L Q D C L I Q Y S M S K M N A S G G Y T Y S K I V - S N T L - V R . . . 105739 GTATTAGAAATGTTTGGATTAGTGA V L E M F G L V Y - K C L D - - C I R N V W I S Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-19_AGS-3_PPS_1 (105499 105735) (frame '1'; 234 bp, 78 residues) 1 GNDFNYLPFG SGRRLCAGIG MAERMFMYSL ASLIHSFDWK LPEGETLDLT EKFGIVLKKK 61 MPLVAIPTPR LSDPILYE- >C08HBa0060C12.1+_PGL-19_AGS-3_PPS_2 (105507 105716) (frame '0'; 207 bp, 69 residues) 1 FQLSPIWFWK KTVRGDRHGR EDVHVFTCFA HSFFRLEIAR RRDVRPHREV WDCSEEENAS 61 GGYTYSKIV- 3-phase translation of AGS-3 (-strand): . . . . . . 105763 TCACTAATCCAAACATTTCTAATACATCTTACTCATAGAGTATTGGATCAGACAATCTTG S L I Q T F L I H L T H R V L D Q T I L H - S K H F - Y I L L I E Y W I R Q S W T N P N I S N T S Y S - S I G S D N L . . . . . . 105703 GAGTAGGTATAGCCACCAGAGGCATTTTCTTCTTCAGAACAATCCCAAACTTCTCTGTGA E - V - P P E A F S S S E Q S Q T S L - S R Y S H Q R H F L L Q N N P K L L C E G V G I A T R G I F F F R T I P N F S V . . . . . . 105643 GGTCTAACGTCTCTCCTTCTGGCAATTTCCAGTCGAAAGAATGAATGAGCGAAGCAAGTG G L T S L L L A I S S R K N E - A K Q V V - R L S F W Q F P V E R M N E R S K - R S N V S P S G N F Q S K E - M S E A S . . . . . . 105583 AATACATGAACATCCTCTCTGCCATGCCTATCCCCGCGCACAGTCTTCTTCCAGAACCAA N T - T S S L P C L S P R T V F F Q N Q I H E H P L C H A Y P R A Q S S S R T K E Y M N I L S A M P I P A H S L L P E P . . . 105523 ATGGGAGATAGTTGAAATCATTTCC M G D S - N H F W E I V E I I S N G R - L K S F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (108482 108638) SCR (e 0.924) Exon 1 108482 108638 ( 157 n); score: 0.924 PGS (108482 108638) SGN-E378974- 3-phase translation of AGS-4 (+strand): . . . . . . 108482 CTTAACTCATTCATTCTTTCGACTGGAAATTGCCTGAAGGAGAGACATTAGACCTTACAG L N S F I L S T G N C L K E R H - T L Q L T H S F F R L E I A - R R D I R P Y R - L I H S F D W K L P E G E T L D L T . . . . . . 108542 AAAAGTTTGGTATTTTATTGAAGAAGAAAATACCTCTGGTGGCTATACCTACTCCAAGAT K S L V F Y - R R K Y L W W L Y L L Q D K V W Y F I E E E N T S G G Y T Y S K I E K F G I L L K K K I P L V A I P T P R . . . . 108602 TATCCAATCCAACACTGTATGAGTAAGATAAAAATGT Y P I Q H C M S K I K M I Q S N T V - V R - K C L S N P T L Y E - D K N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (-strand): . . . . . . 108638 ACATTTTTATCTTACTCATACAGTGTTGGATTGGATAATCTTGGAGTAGGTATAGCCACC T F L S Y S Y S V G L D N L G V G I A T H F Y L T H T V L D W I I L E - V - P P I F I L L I Q C W I G - S W S R Y S H . . . . . . 108578 AGAGGTATTTTCTTCTTCAATAAAATACCAAACTTTTCTGTAAGGTCTAATGTCTCTCCT R G I F F F N K I P N F S V R S N V S P E V F S S S I K Y Q T F L - G L M S L L Q R Y F L L Q - N T K L F C K V - C L S . . . . 108518 TCAGGCAATTTCCAGTCGAAAGAATGAATGAGTTAAG S G N F Q S K E - M S - Q A I S S R K N E - V K F R Q F P V E R M N E L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 20 (+ strand): 109525 113481 AGS-1 (109525 110419,110993 111104) SCR (e 0.832 d 0.999 a 0.999,e 0.902) Exon 1 109525 110419 ( 895 n); score: 0.832 Intron 1 110420 110992 ( 573 n); Pd: 0.999 Pa: 0.999 Exon 2 110993 111104 ( 112 n); score: 0.902 PGS (109525 110223) SGN-E391592+ PGS (109525 110061) SGN-E392906+ PGS (109525 110007) SGN-E391464+ PGS (109526 110033) SGN-E205199+ PGS (109954 110419,110993 111104) SGN-E267100+ 3-phase translation of AGS-1 (+strand): . . . . . . 109525 CTTTAAAGGAACTTTTTCTAGCAGCTTTCACCCTTTCAATTGTATTCCTTACAATTCTGT L - R N F F - Q L S P F Q L Y S L Q F C F K G T F S S S F H P F N C I P Y N S V L K E L F L A A F T L S I V F L T I L . . . . . . 109585 GGTACAAATTGGCATCACACAAGAAAGAATCGAGGTTGCCACCAGGACCTCGTGGTCTTC G T N W H H T R K N R G C H Q D L V V F V Q I G I T Q E R I E V A T R T S W S S W Y K L A S H K K E S R L P P G P R G L . . . . . . 109645 CGATTGTGGGATTCTTACAATTCCTCCCGACCAATTTGCATCACCAGCTCACGAAGTTAT R L W D S Y N S S R P I C I T S S R S Y D C G I L T I P P D Q F A S P A H E V I P I V G F L Q F L P T N L H H Q L T K L . . . . . . 109705 CTCAACAATATGGTCCAATTTACAAGTTTTGGCTAGGAAGCAAACTATGTGTTGTGTTGA L N N M V Q F T S F G - E A N Y V L C - S T I W S N L Q V L A R K Q T M C C V E S Q Q Y G P I Y K F W L G S K L C V V L . . . . . . 109765 ATTCACCATCCTTAGCCAAAGAAGTTGTTTGTGATCAAGATTCTGTTTTGGCTAACCATG I H H P - P K K L F V I K I L F W L T M F T I L S Q R S C L - S R F C F G - P - N S P S L A K E V V C D Q D S V L A N H . . . . . . 109825 ACCCTCCAATTGCAGGATTAGTAGGTACTATGGTGGACTAGATATTGGATTTTCCCCTTG T L Q L Q D - - V L W W T R Y W I F P L P S N C R I S R Y Y G G L D I G F S P C D P P I A G L V G T M V D - I L D F P L . . . . . . 109885 TGGCTCATACTGGCGTGAGGTGCGCAAACTGTTCCTAAGGGAGATGCTAAGCAACAGGAA W L I L A - G A Q T V P K G D A K Q Q E G S Y W R E V R K L F L R E M L S N R N V A H T G V R C A N C S - G R C - A T G . . . . . . 109945 CCTTGAGGCCTGTTATAGCCTTCGGAGGCACAAGGTCAGAAAGACAATCAGAAATGTGCA P - G L L - P S E A Q G Q K D N Q K C A L E A C Y S L R R H K V R K T I R N V H T L R P V I A F G G T R S E R Q S E M C . . . . . . 110005 TACCAAGATTGGTAACCCTGTTGACATTGGTGAATTGGCCTTTCTAGCTGAAATAAATGT Y Q D W - P C - H W - I G L S S - N K C T K I G N P V D I G E L A F L A E I N V I P R L V T L L T L V N W P F - L K - M . . . . . . 110065 AGTCATTAGTATTATCTTTGGCAGCAAATTTGTCGAGAATATGGAGAAGTGTAGTAAAGA S H - Y Y L W Q Q I C R E Y G E V - - R V I S I I F G S K F V E N M E K C S K D - S L V L S L A A N L S R I W R S V V K . . . . . . 110125 TGGAACTGAATTCAGGGAATTGGTGGTGAAATATGGTCAAGTGATGGGAAAGCCTAACAT W N - I Q G I G G E I W S S D G K A - H G T E F R E L V V K Y G Q V M G K P N I M E L N S G N W W - N M V K - W E S L T . . . . . . 110185 ATCAGACTTCTTCCCTGTGCTTGACTTACAAGGAATACAGAAAGTGATGGGAAAGCCTAA I R L L P C A - L T R N T E S D G K A - S D F F P V L D L Q G I Q K V M G K P N Y Q T S S L C L T Y K E Y R K - W E S L . . . . . . 110245 CATATCAGACTTCCACCCTGCCATAAGTGAATGTGTCAAGATGCTTTCGGACCGAAGAGA H I R L P P C H K - M C Q D A F G P K R I S D F H P A I S E C V K M L S D R R E T Y Q T S T L P - V N V S R C F R T E E . . . . . . 110305 GGGTGAAATCCAGAGGAATGAGAAGAAACATCTTATACAGATCCTGTTAGAGCTAATGGA G - N P E E - E E T S Y T D P V R A N G G E I Q R N E K K H L I Q I L L E L M E R V K S R G M R R N I L Y R S C - S - W . . . . . . : 110365 ACAGAAAGACATTGGTATATCACTGGACTAAGTGAAAATTAAGGCCATCTTGGTG : GACAT T E R H W Y I T G L S E N - G H L G : G H Q K D I G I S L D - V K I K A I L V : D I N R K T L V Y H W T K - K L R P S W W : T . . . . . . 110998 TGTGATTGGTGGGACTGACACTACAATCACGACGGTTGAGTGGGTAATGTCTGAGCTTCT C D W W D - H Y N H D G - V G N V - A S V I G G T D T T I T T V E W V M S E L L L - L V G L T L Q S R R L S G - C L S F . . . . . 111058 GAATAATCCGGAGATAATGTCAAAGGTGCAGCAGGAATCGAAACATG E - S G D N V K G A A G I E T N N P E I M S K V Q Q E S K H - I I R R - C Q R C S R N R N M Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-20_AGS-1_PPS_1 (109826 110395) (frame '2'; 567 bp, 189 residues) 1 PSNCRISRYY GGLDIGFSPC GSYWREVRKL FLREMLSNRN LEACYSLRRH KVRKTIRNVH 61 TKIGNPVDIG ELAFLAEINV VISIIFGSKF VENMEKCSKD GTEFRELVVK YGQVMGKPNI 121 SDFFPVLDLQ GIQKVMGKPN ISDFHPAISE CVKMLSDRRE GEIQRNEKKH LIQILLELME 181 QKDIGISLD- >C08HBa0060C12.1+_PGL-20_AGS-1_PPS_2 (109526 109798) (frame '2'; 270 bp, 90 residues) 1 FKGTFSSSFH PFNCIPYNSV VQIGITQERI EVATRTSWSS DCGILTIPPD QFASPAHEVI 61 STIWSNLQVL ARKQTMCCVE FTILSQRSCL - AGS-2 (110670 110698,112639 113065) SCR (e 0.828 d 0.000 a 0.000,e 0.905) Exon 1 110670 110698 ( 29 n); score: 0.828 Intron 1 110699 112638 (1940 n); Pd: 0.000 Pa: 0.000 Exon 2 112639 113065 ( 427 n); score: 0.905 PGS (110670 110698,112639 113065) SGN-E317264+ 3-phase translation of AGS-2 (+strand): . . . : . . . 110670 CTGTTATTTATAGTCTTGTAAATATATAC : ATAGACATTATTCTTATAAGATTGATGTATA L L F I V L - I Y T : - T L F L - D - C I C Y L - S C K Y I : H R H Y S Y K I D V Y V I Y S L V N I Y : I D I I L I R L M Y . . . . . . 112670 TATAGATGAAAAAATAAGTACAAAATTAGTACATAACTCTCTGAGTTTTTATCGACTCCT Y R - K N K Y K I S T - L S E F L S T P I D E K I S T K L V H N S L S F Y R L L I - M K K - V Q N - Y I T L - V F I D S . . . . . . 112730 TTCATATCCTATAAAAATTCAAGAGTCTTCATCATCTATTTTTACTATAGAATAAAAATA F I S Y K N S R V F I I Y F Y Y R I K I S Y P I K I Q E S S S S I F T I E - K - F H I L - K F K S L H H L F L L - N K N . . . . . . 112790 ATAGCCTATTAATCTTGATAGGGGTTTCATGAGATAAAGAAGTTAAATTTATATAAATAG I A Y - S - - G F H E I K K L N L Y K - - P I N L D R G F M R - R S - I Y I N R N S L L I L I G V S - D K E V K F I - I . . . . . . 112850 AATAAAAGGAATATCAAAAGATATCTTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAA N K R N I K R Y L K V L V - I F G G Y E I K G I S K D I L K F - F K Y L E V M N E - K E Y Q K I S - S F S L N I W R L - . . . . . . 112910 TATGAAAAGATAGAGTTATGAATATTAAGAGTATAAAAGTTAAATAAGTAATTAGAAAAT Y E K I E L - I L R V - K L N K - L E N M K R - S Y E Y - E Y K S - I S N - K I I - K D R V M N I K S I K V K - V I R K . . . . . . 112970 AATAATAAATAAATGAAGAATATGAAAAAAAAATTAAAGTGAGCAAACCATGTAAAAAGA N N K - M K N M K K K L K - A N H V K R I I N K - R I - K K N - S E Q T M - K E - - - I N E E Y E K K I K V S K P C K K . . . . 113030 ACAACCACAGTTCTTATCATGCAATTAAGCATTAAT T T T V L I M Q L S I N Q P Q F L S C N - A L N N H S S Y H A I K H - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (112490 113019) SCR (e 0.902) Exon 1 112490 113019 ( 530 n); score: 0.902 PGS (112490 112981) SGN-E301078- PGS (112556 113019) SGN-E301194- 3-phase translation of AGS-3 (+strand): . . . . . . 112490 ATATGTAAATTGTAATGAATAATAAAATGTATCAATTACAAAATTCAAAGACTTACGGCA I C K L - - I I K C I N Y K I Q R L T A Y V N C N E - - N V S I T K F K D L R Q M - I V M N N K M Y Q L Q N S K T Y G . . . . . . 112550 ATAAAACATTCATAGAAAACTAAATTAAGAAGTCTAACAGAGTGAAAAAAAGATAAAAAG I K H S - K T K L R S L T E - K K D K K - N I H R K L N - E V - Q S E K K I K R N K T F I E N - I K K S N R V K K R - K . . . . . . 112610 AAACAGAATATTTAAGAAAAAAATACAATATAGACATTATTCTTATAAGATTGATGTATA K Q N I - E K N T I - T L F L - D - C I N R I F K K K I Q Y R H Y S Y K I D V Y E T E Y L R K K Y N I D I I L I R L M Y . . . . . . 112670 TATAGATGAAAAAATAAGTACAAAATTAGTACATAACTCTCTGAGTTTTTATCGACTCCT Y R - K N K Y K I S T - L S E F L S T P I D E K I S T K L V H N S L S F Y R L L I - M K K - V Q N - Y I T L - V F I D S . . . . . . 112730 TTCATATCCTATAAAAATTCAAGAGTCTTCATCATCTATTTTTACTATAGAATAAAAATA F I S Y K N S R V F I I Y F Y Y R I K I S Y P I K I Q E S S S S I F T I E - K - F H I L - K F K S L H H L F L L - N K N . . . . . . 112790 ATAGCCTATTAATCTTGATAGGGGTTTCATGAGATAAAGAAGTTAAATTTATATAAATAG I A Y - S - - G F H E I K K L N L Y K - - P I N L D R G F M R - R S - I Y I N R N S L L I L I G V S - D K E V K F I - I . . . . . . 112850 AATAAAAGGAATATCAAAAGATATCTTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAA N K R N I K R Y L K V L V - I F G G Y E I K G I S K D I L K F - F K Y L E V M N E - K E Y Q K I S - S F S L N I W R L - . . . . . . 112910 TATGAAAAGATAGAGTTATGAATATTAAGAGTATAAAAGTTAAATAAGTAATTAGAAAAT Y E K I E L - I L R V - K L N K - L E N M K R - S Y E Y - E Y K S - I S N - K I I - K D R V M N I K S I K V K - V I R K . . . . . 112970 AATAATAAATAAATGAAGAATATGAAAAAAAAATTAAAGTGAGCAAACCA N N K - M K N M K K K L K - A N I I N K - R I - K K N - S E Q T - - - I N E E Y E K K I K V S K P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-20_AGS-3_PPS_1 (112587 112784) (frame '2'; 195 bp, 65 residues) 1 QSEKKIKRNR IFKKKIQYRH YSYKIDVYID EKISTKLVHN SLSFYRLLSY PIKIQESSSS 61 IFTIE- 3-phase translation of AGS-3 (-strand): . . . . . . 113019 TGGTTTGCTCACTTTAATTTTTTTTTCATATTCTTCATTTATTTATTATTATTTTCTAAT W F A H F N F F F I F F I Y L L L F S N G L L T L I F F S Y S S F I Y Y Y F L I V C S L - F F F H I L H L F I I I F - . . . . . . 112959 TACTTATTTAACTTTTATACTCTTAATATTCATAACTCTATCTTTTCATATTCATAACCT Y L F N F Y T L N I H N S I F S Y S - P T Y L T F I L L I F I T L S F H I H N L L L I - L L Y S - Y S - L Y L F I F I T . . . . . . 112899 CCAAATATTTAAACTAAAACTTTAAGATATCTTTTGATATTCCTTTTATTCTATTTATAT P N I - T K T L R Y L L I F L L F Y L Y Q I F K L K L - D I F - Y S F Y S I Y I S K Y L N - N F K I S F D I P F I L F I . . . . . . 112839 AAATTTAACTTCTTTATCTCATGAAACCCCTATCAAGATTAATAGGCTATTATTTTTATT K F N F F I S - N P Y Q D - - A I I F I N L T S L S H E T P I K I N R L L F L F - I - L L Y L M K P L S R L I G Y Y F Y . . . . . . 112779 CTATAGTAAAAATAGATGATGAAGACTCTTGAATTTTTATAGGATATGAAAGGAGTCGAT L - - K - M M K T L E F L - D M K G V D Y S K N R - - R L L N F Y R I - K E S I S I V K I D D E D S - I F I G Y E R S R . . . . . . 112719 AAAAACTCAGAGAGTTATGTACTAATTTTGTACTTATTTTTTCATCTATATATACATCAA K N S E S Y V L I L Y L F F H L Y I H Q K T Q R V M Y - F C T Y F F I Y I Y I N - K L R E L C T N F V L I F S S I Y T S . . . . . . 112659 TCTTATAAGAATAATGTCTATATTGTATTTTTTTCTTAAATATTCTGTTTCTTTTTATCT S Y K N N V Y I V F F S - I F C F F L S L I R I M S I L Y F F L K Y S V S F Y L I L - E - C L Y C I F F L N I L F L F I . . . . . . 112599 TTTTTTCACTCTGTTAGACTTCTTAATTTAGTTTTCTATGAATGTTTTATTGCCGTAAGT F F H S V R L L N L V F Y E C F I A V S F F T L L D F L I - F S M N V L L P - V F F S L C - T S - F S F L - M F Y C R K . . . . . 112539 CTTTGAATTTTGTAATTGATACATTTTATTATTCATTACAATTTACATAT L - I L - L I H F I I H Y N L H F E F C N - Y I L L F I T I Y I S L N F V I D T F Y Y S L Q F T Y Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (113266 113481) SCR (e 0.949) Exon 1 113266 113481 ( 216 n); score: 0.949 PGS (113266 113481) SGN-E371571+ PGS (113266 113481) SGN-E370504+ PGS (113266 113481) SGN-E280629+ PGS (113266 113481) SGN-E391217+ 3-phase translation of AGS-4 (+strand): . . . . . . 113266 TTATAATTATTATATACATATAGATTATAGATGATAAATATTAATAGATTAGATATTTAA L - L L Y T Y R L - M I N I N R L D I - Y N Y Y I H I D Y R - - I L I D - I F N I I I I Y I - I I D D K Y - - I R Y L . . . . . . 113326 TTAGGAATTAATCTTAGGAAGTCTAAAAGTCATTAACATTTAATTAAATTTATACAATCA L G I N L R K S K S H - H L I K F I Q S - E L I L G S L K V I N I - L N L Y N Q I R N - S - E V - K S L T F N - I Y T I . . . . . . 113386 AATATTTAAATATTTTATAATAATTTAATTTATAAAAAGGGTAAAATCGTAATTCAACTT N I - I F Y N N L I Y K K G K I V I Q L I F K Y F I I I - F I K R V K S - F N F K Y L N I L - - F N L - K G - N R N S T . . . . 113446 TTAACTTTTTTGTTCATGCTTTTTGTAATATATGAT L T F L F M L F V I Y D - L F C S C F L - Y M F N F F V H A F C N I - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (-strand): . . . . . . 113481 ATCATATATTACAAAAAGCATGAACAAAAAAGTTAAAAGTTGAATTACGATTTTACCCTT I I Y Y K K H E Q K S - K L N Y D F T L S Y I T K S M N K K V K S - I T I L P F H I L Q K A - T K K L K V E L R F Y P . . . . . . 113421 TTTATAAATTAAATTATTATAAAATATTTAAATATTTGATTGTATAAATTTAATTAAATG F I N - I I I K Y L N I - L Y K F N - M L - I K L L - N I - I F D C I N L I K C F Y K L N Y Y K I F K Y L I V - I - L N . . . . . . 113361 TTAATGACTTTTAGACTTCCTAAGATTAATTCCTAATTAAATATCTAATCTATTAATATT L M T F R L P K I N S - L N I - S I N I - - L L D F L R L I P N - I S N L L I F V N D F - T S - D - F L I K Y L I Y - Y . . . . 113301 TATCATCTATAATCTATATGTATATAATAATTATAA Y H L - S I C I - - L - I I Y N L Y V Y N N Y L S S I I Y M Y I I I I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 21 (+ strand): 114454 115909 AGS-1 (114454 115352,115798 115909) SCR (e 1.000 d 0.998 a 0.999,e 1.000) Exon 1 114454 115352 ( 899 n); score: 1.000 Intron 1 115353 115797 ( 445 n); Pd: 0.998 Pa: 0.999 Exon 2 115798 115909 ( 112 n); score: 1.000 PGS (114454 115139) SGN-E391592+ PGS (114454 114985) SGN-E392906+ PGS (114454 114931) SGN-E391464+ PGS (114455 114957) SGN-E205199+ PGS (114878 115352,115798 115909) SGN-E267100+ 3-phase translation of AGS-1 (+strand): . . . . . . 114454 CTTTAAATGATCTATGGATTGCAGCCCTCACTGTTTCAATTGTGTTCCTTACAATTCTTT L - M I Y G L Q P S L F Q L C S L Q F F F K - S M D C S P H C F N C V P Y N S L L N D L W I A A L T V S I V F L T I L . . . . . . 114514 GGTACAAATTGAACAAGGTGGAATCCAACTTGCCACCAGGGCCTCGTGGCCTTCCGATTG G T N - T R W N P T C H Q G L V A F R L V Q I E Q G G I Q L A T R A S W P S D C W Y K L N K V E S N L P P G P R G L P I . . . . . . 114574 TGGGATTCTTACCATTCCTCCGCGCCAATTTGCATCACCAGCTCACAGAGTTGTCTCAAC W D S Y H S S A P I C I T S S Q S C L N G I L T I P P R Q F A S P A H R V V S T V G F L P F L R A N L H H Q L T E L S Q . . . . . . 114634 AGTATGGTCCAATATACAAGTTTTGGCTAGGAGGAAAACTATGTGTTGTGTTGAATTCAC S M V Q Y T S F G - E E N Y V L C - I H V W S N I Q V L A R R K T M C C V E F T Q Y G P I Y K F W L G G K L C V V L N S . . . . . . 114694 CATCCTTAGCCAAAGAAGTTGTTCGCGATCAAGACTCCATTTTTGCCAACCGTGACCCTC H P - P K K L F A I K T P F L P T V T L I L S Q R S C S R S R L H F C Q P - P S P S L A K E V V R D Q D S I F A N R D P . . . . . . 114754 CAATTGCAGGATTAGTGGCCACATATGGTGGACTAGATATTGGATTTTCTCCCTATGGCT Q L Q D - W P H M V D - I L D F L P M A N C R I S G H I W W T R Y W I F S L W L P I A G L V A T Y G G L D I G F S P Y G . . . . . . 114814 CCTACTGGCGTGATATGCGCAAACTGTTTGTAAGGGAGATGCTAAGCAACAGGAACCTTG P T G V I C A N C L - G R C - A T G T L L L A - Y A Q T V C K G D A K Q Q E P - S Y W R D M R K L F V R E M L S N R N L . . . . . . 114874 AATCCTGTTATAGCCTTCGGAGACAGGAGGTCAGAAAGACAATCAAAAATGTGCATACCA N P V I A F G D R R S E R Q S K M C I P I L L - P S E T G G Q K D N Q K C A Y Q E S C Y S L R R Q E V R K T I K N V H T . . . . . . 114934 AGATTGGCAGCCTCACTGATATTGGTGAATTAGCCTTTGTAACTGAAATGAATGTAATTA R L A A S L I L V N - P L - L K - M - L D W Q P H - Y W - I S L C N - N E C N Y K I G S L T D I G E L A F V T E M N V I . . . . . . 114994 TGAGTATGATCTTTGGCAGCAATTTTGTAGAGGAGATGGAGAAGCATGGAACTGAATTTA - V - S L A A I L - R R W R S M E L N L E Y D L W Q Q F C R G D G E A W N - I - M S M I F G S N F V E E M E K H G T E F . . . . . . 115054 GGGAATTAGTGATAAAATATCCTCAAATACTGGGAAGGCCAAACATATCAGACTTCTTCC G N - - - N I L K Y W E G Q T Y Q T S S G I S D K I S S N T G K A K H I R L L P R E L V I K Y P Q I L G R P N I S D F F . . . . . . 115114 CCATGCTTGCGAGGTTTGATTTACAAGGAATACAGAAAGACGCGGAGGCTCTTTTGAAGT P C L R G L I Y K E Y R K T R R L F - S H A C E V - F T R N T E R R G G S F E V P M L A R F D L Q G I Q K D A E A L L K . . . . . . 115174 CGGTTGAAAGTATATTGGACCCTGCCATAAATGAACACTTGAAGATGCTTTCAGACAGAA R L K V Y W T L P - M N T - R C F Q T E G - K Y I G P C H K - T L E D A F R Q K S V E S I L D P A I N E H L K M L S D R . . . . . . 115234 GAGAAGGTGAAATCCAGGGGAATGAGAAGAAAGACTTTATACAGATCCTGTTAGAGCTGA E K V K S R G M R R K T L Y R S C - S - R R - N P G E - E E R L Y T D P V R A D R E G E I Q G N E K K D F I Q I L L E L . . . . . . : 115294 TGGAGCAGAAAGACATTGGTATATCACTAGACTTGGTGAAAATAAAGGCTATCTTGGTG : G W S R K T L V Y H - T W - K - R L S W W : G A E R H W Y I T R L G E N K G Y L G : G M E Q K D I G I S L D L V K I K A I L V : . . . . . . 115799 ACATTGTTATAGGTGGGACTGACTCTACAATCACAACGATCGAGTGGGTAATGACAGAGC T L L - V G L T L Q S Q R S S G - - Q S H C Y R W D - L Y N H N D R V G N D R A D I V I G G T D S T I T T I E W V M T E . . . . . . 115859 TTCTGAATAATCCAGAGACAATGTCAAAGGTGCAGCAGGAATTGAAACATG F - I I Q R Q C Q R C S R N - N M S E - S R D N V K G A A G I E T L L N N P E T M S K V Q Q E L K H Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-21_AGS-1_PPS_1 (114456 115352,115798 115908) (frame '0'; 1008 bp, 336 residues) 1 LNDLWIAALT VSIVFLTILW YKLNKVESNL PPGPRGLPIV GFLPFLRANL HHQLTELSQQ 61 YGPIYKFWLG GKLCVVLNSP SLAKEVVRDQ DSIFANRDPP IAGLVATYGG LDIGFSPYGS 121 YWRDMRKLFV REMLSNRNLE SCYSLRRQEV RKTIKNVHTK IGSLTDIGEL AFVTEMNVIM 181 SMIFGSNFVE EMEKHGTEFR ELVIKYPQIL GRPNISDFFP MLARFDLQGI QKDAEALLKS 241 VESILDPAIN EHLKMLSDRR EGEIQGNEKK DFIQILLELM EQKDIGISLD LVKIKAILVD 301 IVIGGTDSTI TTIEWVMTEL LNNPETMSKV QQELKH PGL 22 (- strand): 120600 116296 AGS-1 (120600 119977,119897 119218,118948 118835,117505 116955,116834 116296) SCR (e 0.991 d 0.999 a 0.997,e 1.000 d 1.000 a 0.995,e 1.000 d 0.991 a 1.000,e 1.000 d 0.989 a 1.000,e 1.000) Exon 1 120600 119977 ( 624 n); score: 0.991 Intron 1 119976 119898 ( 79 n); Pd: 0.999 Pa: 0.997 Exon 2 119897 119218 ( 680 n); score: 1.000 Intron 2 119217 118949 ( 269 n); Pd: 1.000 Pa: 0.995 Exon 3 118948 118835 ( 114 n); score: 1.000 Intron 3 118834 117506 (1329 n); Pd: 0.991 Pa: 1.000 Exon 4 117505 116955 ( 551 n); score: 1.000 Intron 4 116954 116835 ( 120 n); Pd: 0.989 Pa: 1.000 Exon 5 116834 116296 ( 539 n); score: 1.000 PGS (116560 116296) SGN-E292308+ PGS (116560 116296) SGN-E373558+ PGS (116560 116297) SGN-E292126- PGS (116560 116297) SGN-E373559- PGS (117372 116955,116834 116497) SGN-E369504- PGS (117244 116955,116834 116497) SGN-E249147- PGS (116682 116501) SGN-E398150- PGS (117401 116955,116834 116557) SGN-E550529- PGS (117470 116955,116834 116725) SGN-E316045+ PGS (118963 118835,117505 117148) SGN-E243063+ PGS (118948 118835,117505 117283) SGN-E243064+ PGS (119552 119218,118948 118835,117505 117425) SGN-E247162+ PGS (119652 119218,118948 118835,117505 117455) SGN-E250226+ PGS (119795 119218) SGN-E395186+ PGS (120111 119977,119897 119349) SGN-E369505+ PGS (119794 119485) SGN-E291880+ PGS (120111 119977,119897 119533) SGN-E246163+ PGS (120600 120016) SGN-E537400+ 3-phase translation of AGS-1 (-strand): . . . . . . 120600 ATCAATAGCCAGCCATGGAAGGAAGAAATCTCTTCTTCCTCATGAGTATAATTTTGCTCT I N S Q P W K E E I S S S S - V - F C S S I A S H G R K K S L L P H E Y N F A L Q - P A M E G R N L F F L M S I I L L . . . . . . 120540 TAATTTTCACTTTCTTAAACTTACCATCTCCGCTTTCTCACACAACGGATCAGCTATTCG - F S L S - T Y H L R F L T Q R I S Y S N F H F L K L T I S A F S H N G S A I R L I F T F L N L P S P L S H T T D Q L F . . . . . . 120480 ACTGCACCACTTACTCCCCGTGGTGCAGTTCGAAAAAGCCCTTTTTCCTCCGGCAACCGG T A P L T P R G A V R K S P F S S G N R L H H L L P V V Q F E K A L F P P A T G D C T T Y S P W C S S K K P F F L R Q P . . . . . . 120420 AAAATTCCAAAAATCACTACGCCGATTTCCCCAATCATCCTTTAGACCCACTGACAATCG K I P K I T T P I S P I I L - T H - Q S K F Q K S L R R F P Q S S F R P T D N R E N S K N H Y A D F P N H P L D P L T I . . . . . . 120360 GCGAAATTCAAAAAGTGAAGAAAATCGTTCATTCAATTGCGGAATTTAGGATTAAAGGTT A K F K K - R K S F I Q L R N L G L K V R N S K S E E N R S F N C G I - D - R L G E I Q K V K K I V H S I A E F R I K G . . . . . . 120300 GCGTTCTTCACTCTGTTGTACTTGAAGAGCCGGAGAAGGAGGTAGTGTTGAACTGGCGGA A F F T L L Y L K S R R R R - C - T G G R S S L C C T - R A G E G G S V E L A E C V L H S V V L E E P E K E V V L N W R . . . . . . 120240 GAGGTCACCGGCTTCCACCGCGGAAGGCGGCCGTCGTTGCGCGTGCGCTCGGCGTCGTGC E V T G F H R G R R P S L R V R S A S C R S P A S T A E G G R R C A C A R R R A R G H R L P P R K A A V V A R A L G V V . . . . . . 120180 ACGTGCTTTCAGTGGATATTGAAACGGGTCGTGTGACCCGACGTGAAACGGGTAGTTATT T C F Q W I L K R V V - P D V K R V V I R A F S G Y - N G S C D P T - N G - L F H V L S V D I E T G R V T R R E T G S Y . . . . . . 120120 CGGGTTACCCGATCCTGACTATCGAGGATATGATCTCCGCCACTTCTGCCCCGTTTGCCA R V T R S - L S R I - S P P L L P R L P G L P D P D Y R G Y D L R H F C P V C Q S G Y P I L T I E D M I S A T S A P F A . . . . . . 120060 ACTCTGATTTTAACCGTTCGATTATCCAGCGTGGCGTTGATTTGGCTGACCTGGCATGTC T L I L T V R L S S V A L I W L T W H V L - F - P F D Y P A W R - F G - P G M S N S D F N R S I I Q R G V D L A D L A C . . . : . . . 120000 TACCCGTCGCTGCTGGTTGGTATG : GAAAAATCGAGGAGAAACGAAGAGTGATTAAAGTAC Y P S L L V G M : E K S R R N E E - L K Y T R R C W L V W : K N R G E T K S D - S T L P V A A G W Y : G K I E E K R R V I K V . . . . . . 119861 AGTCTTTTACATTGAAGGACACTATCAATTTCTATATGAGACCGATTGAAGGATTAACCG S L L H - R T L S I S I - D R L K D - P V F Y I E G H Y Q F L Y E T D - R I N R Q S F T L K D T I N F Y M R P I E G L T . . . . . . 119801 TACTTCTTGATTTAGACACTCAACAAGTTATTGAAATTTTCGATGAAGGAGAGAGTATAC Y F L I - T L N K L L K F S M K E R V Y T S - F R H S T S Y - N F R - R R E Y T V L L D L D T Q Q V I E I F D E G E S I . . . . . . 119741 CAATACCAAAGGCCGCCAACACAGACTATCGCTACTCTCGTATTAAAAAAAACAAACAAA Q Y Q R P P T Q T I A T L V L K K T N K N T K G R Q H R L S L L S Y - K K Q T K P I P K A A N T D Y R Y S R I K K N K Q . . . . . . 119681 AAATAAACTTACTCAAACCAATATCAATCGAACAACCAAATGGTCCAAGTTTCACTATAG K - T Y S N Q Y Q S N N Q M V Q V S L - N K L T Q T N I N R T T K W S K F H Y R K I N L L K P I S I E Q P N G P S F T I . . . . . . 119621 AAAACAATCATCTAGTTAAATGGGCAAATTGGGAATTTCACCTGAAGCCGGATCCGAGAG K T I I - L N G Q I G N F T - S R I R E K Q S S S - M G K L G I S P E A G S E S E N N H L V K W A N W E F H L K P D P R . . . . . . 119561 CCGGGGTGATTATATCCCGGGTCATGTTTGAGGATCCGGATACGGGGAAGATGAGGAATG P G - L Y P G S C L R I R I R G R - G M R G D Y I P G H V - G S G Y G E D E E C A G V I I S R V M F E D P D T G K M R N . . . . . . 119501 TTATGTATAAAGGGTTTACGTCGGAGTTGTTTGTACCTTACATGGATCCATCAGATGCAT L C I K G L R R S C L Y L T W I H Q M H Y V - R V Y V G V V C T L H G S I R C M V M Y K G F T S E L F V P Y M D P S D A . . . . . . 119441 GGTATTTTAAGACGTATATGGATGCAGGTGAATACGGGTTCGGGTTACAAGCGATGCCAC G I L R R I W M Q V N T G S G Y K R C H V F - D V Y G C R - I R V R V T S D A T W Y F K T Y M D A G E Y G F G L Q A M P . . . . . . 119381 TTGACCCGTTAAATGATTGTCCTCGTAATGCGTATTATATGGATGGTGTATTTGTGGCAG L T R - M I V L V M R I I W M V Y L W Q - P V K - L S S - C V L Y G W C I C G S L D P L N D C P R N A Y Y M D G V F V A . . . . . . 119321 CTGATGGAACACCATATGTGCGATCCAATATGATTTGTGTGTTTGAAAGATATGCTGGTG L M E H H M C D P I - F V C L K D M L V - W N T I C A I Q Y D L C V - K I C W - A D G T P Y V R S N M I C V F E R Y A G . . . . . : . 119261 ATATTGGATGGCGACATGCTGAATGTCCAATTACTGGTTTACCG : ATACGAGAAGTAAGGC I L D G D M L N V Q L L V Y R : Y E K - G Y W M A T C - M S N Y W F T : D T R S K A D I G W R H A E C P I T G L P : I R E V R . . . . . . 118932 CAAAGGTGACGTTAGTGGTGAGAATGGCAGCGTCAGTAGCAAATTATGATTATATTGTCG Q R - R - W - E W Q R Q - Q I M I I L S K G D V S G E N G S V S S K L - L Y C R P K V T L V V R M A A S V A N Y D Y I V . . . . : . . 118872 ATTGGGAGTTTCAGAACGATGGACTTATTCGACCTAAG : GTTGGACTAAGTGGAATATTGA I G S F R T M D L F D L R : L D - V E Y - L G V S E R W T Y S T - : G W T K W N I D D W E F Q N D G L I R P K : V G L S G I L . . . . . . 117483 TGGTGAAAGGCTCTCCCTATGTGAACATGAATGAAGTAAACCAAAATGAGTATCTTTATG W - K A L P M - T - M K - T K M S I F M G E R L S L C E H E - S K P K - V S L W M V K G S P Y V N M N E V N Q N E Y L Y . . . . . . 117423 GCACTCTCTTATCTGAAAACATAGTAGGAGTCATCCATGATCACTATGTAACTTTCCATC A L S Y L K T - - E S S M I T M - L S I H S L I - K H S R S H P - S L C N F P S G T L L S E N I V G V I H D H Y V T F H . . . . . . 117363 TCGACATGGACATCGATGGTCCATCGAACAATTCCTTCGTGAAGGTGAATCTCCAGAAGG S T W T S M V H R T I P S - R - I S R R R H G H R W S I E Q F L R E G E S P E G L D M D I D G P S N N S F V K V N L Q K . . . . . . 117303 AGATGACTTCTTCTGGAGAATCACCGCGAAGAAGCTACTTAAAAGCTGTTAGAAATGTGG R - L L L E N H R E E A T - K L L E M W D D F F W R I T A K K L L K S C - K C G E M T S S G E S P R R S Y L K A V R N V . . . . . . 117243 CTAAAACTGAAAAAGATGCACAAATTAAGCTCAAACTATATGATCCTTCAGAATTCCATG L K L K K M H K L S S N Y M I L Q N S M - N - K R C T N - A Q T I - S F R I P C A K T E K D A Q I K L K L Y D P S E F H . . . . . . 117183 TAATTAATTCTAATAAGAAGTCTAGAGTTGGGAACCCTGTTGGTTACAAAGTTGTTCCTG - L I L I R S L E L G T L L V T K L F L N - F - - E V - S W E P C W L Q S C S W V I N S N K K S R V G N P V G Y K V V P . . . . . . 117123 GTGGAACTGCAGCTAGTTTACTTGACCATAATGATCCTCCTCAGAAAAGAGCTGCTTTTA V E L Q L V Y L T I M I L L R K E L L L W N C S - F T - P - - S S S E K S C F Y G G T A A S L L D H N D P P Q K R A A F . . . . . . 117063 CTAATAACCAAATTTGGGTCACACCTTATAATGAATCTGAGCAATGGGCTGCTGGCTTGT L I T K F G S H L I M N L S N G L L A C - - P N L G H T L - - I - A M G C W L V T N N Q I W V T P Y N E S E Q W A A G L . . . . . : . 117003 TTGTTTATCAAAGTCAAGGTGATGATACTCTTGCTGTTTGGTCTGACAG : AGACAGGGCAA L F I K V K V M I L L L F G L T : E T G Q C L S K S R - - Y S C C L V - Q : R Q G N F V Y Q S Q G D D T L A V W S D R : D R A . . . . . . 116823 TTGAGAATAAAGACATAGTGTTGTGGTATACATTAGGGTTCCATCATATTCCATGCCAAG L R I K T - C C G I H - G S I I F H A K - E - R H S V V V Y I R V P S Y S M P R I E N K D I V L W Y T L G F H H I P C Q . . . . . . 116763 AGGATTTCCCAATAATGCCAACAGTATCATCAAGCTTTGAGATAAAACCAGTTAATTTCT R I S Q - C Q Q Y H Q A L R - N Q L I S G F P N N A N S I I K L - D K T S - F L E D F P I M P T V S S S F E I K P V N F . . . . . . 116703 TTGAGAGCAACCCAATTCTCAATATTCCACCTAATTCTCCAAAGGACCTCCCAATTTGCA L R A T Q F S I F H L I L Q R T S Q F A - E Q P N S Q Y S T - F S K G P P N L Q F E S N P I L N I P P N S P K D L P I C . . . . . . 116643 AAGCTGCAGCTTCTGCTTGATCATATATTAATTGTACTATATGTGTATGATATGTAAAAA K L Q L L L D H I L I V L Y V Y D M - K S C S F C L I I Y - L Y Y M C M I C K N K A A A S A - S Y I N C T I C V - Y V K . . . . . . 116583 TAATAATGATAGCCGCGCTAGACTTGGATTTTTCGGGTACCTTAGTCTGTAATTTTCATG - - - - P R - T W I F R V P - S V I F M N N D S R A R L G F F G Y L S L - F S - I I M I A A L D L D F S G T L V C N F H . . . . . . 116523 AATGAAATATAAAAGTTCACATATGTACTATCATTTTATTTTAAATAATACATTGTATAC N E I - K F T Y V L S F Y F K - Y I V Y M K Y K S S H M Y Y H F I L N N T L Y T E - N I K V H I C T I I L F - I I H C I . . . . . . 116463 TAAATACACTCATGCTACTCCCCTTGTAGTTTCTTGATTTTACTGATATAGATCTAAATT - I H S C Y S P C S F L I L L I - I - I K Y T H A T P L V V S - F Y - Y R S K F L N T L M L L P L - F L D F T D I D L N . . . . . . 116403 TGGTAACTTGGGAGTAGGGATAGCAAATAGCCTCTTACTTTTCTTGATGACAAGTCCAAA W - L G S R D S K - P L T F L D D K S K G N L G V G I A N S L L L F L M T S P N L V T W E - G - Q I A S Y F S - - Q V Q . . . . . 116343 TCCCTCTGAAAGATCAACGTTTTCGCCCTCAGGGAGTTTCCAATCAAA S L - K I N V F A L R E F P I K P S E R S T F S P S G S F Q S I P L K D Q R F R P Q G V S N Q Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-22_AGS-1_PPS_1 (120592 119977,119897 119218,118948 118835,117505 116955,116834 116624) (frame '0'; 2169 bp, 723 residues) 1 PAMEGRNLFF LMSIILLLIF TFLNLPSPLS HTTDQLFDCT TYSPWCSSKK PFFLRQPENS 61 KNHYADFPNH PLDPLTIGEI QKVKKIVHSI AEFRIKGCVL HSVVLEEPEK EVVLNWRRGH 121 RLPPRKAAVV ARALGVVHVL SVDIETGRVT RRETGSYSGY PILTIEDMIS ATSAPFANSD 181 FNRSIIQRGV DLADLACLPV AAGWYGKIEE KRRVIKVQSF TLKDTINFYM RPIEGLTVLL 241 DLDTQQVIEI FDEGESIPIP KAANTDYRYS RIKKNKQKIN LLKPISIEQP NGPSFTIENN 301 HLVKWANWEF HLKPDPRAGV IISRVMFEDP DTGKMRNVMY KGFTSELFVP YMDPSDAWYF 361 KTYMDAGEYG FGLQAMPLDP LNDCPRNAYY MDGVFVAADG TPYVRSNMIC VFERYAGDIG 421 WRHAECPITG LPIREVRPKV TLVVRMAASV ANYDYIVDWE FQNDGLIRPK VGLSGILMVK 481 GSPYVNMNEV NQNEYLYGTL LSENIVGVIH DHYVTFHLDM DIDGPSNNSF VKVNLQKEMT 541 SSGESPRRSY LKAVRNVAKT EKDAQIKLKL YDPSEFHVIN SNKKSRVGNP VGYKVVPGGT 601 AASLLDHNDP PQKRAAFTNN QIWVTPYNES EQWAAGLFVY QSQGDDTLAV WSDRDRAIEN 661 KDIVLWYTLG FHHIPCQEDF PIMPTVSSSF EIKPVNFFES NPILNIPPNS PKDLPICKAA 721 ASA- PGL 23 (+ strand): 126369 127046 AGS-1 (126369 127046) SCR (e 1.000) Exon 1 126369 127046 ( 678 n); score: 1.000 PGS (126369 127046) SGN-E346581+ 3-phase translation of AGS-1 (+strand): . . . . . . 126369 AGCCTTCTTGAGCGTTCTGGGATTATGGTAGTTAAGGGTGATATTAATGATGCTGTTTTG S L L E R S G I M V V K G D I N D A V L A F L S V L G L W - L R V I L M M L F C P S - A F W D Y G S - G - Y - - C C F . . . . . . 126429 CTGAGGAAGCTGTTTGATGCTGTTGCTTTTACACATGTCATGCATATGGCAGCTCAAGCT L R K L F D A V A F T H V M H M A A Q A - G S C L M L L L L H M S C I W Q L K L A E E A V - C C C F Y T C H A Y G S S S . . . . . . 126489 GGAGTTAGATATGCAATGCAGAATCCAGGTTCTTATGTTCATAGTAATATTGCTGGTTTT G V R Y A M Q N P G S Y V H S N I A G F E L D M Q C R I Q V L M F I V I L L V L W S - I C N A E S R F L C S - - Y C W F . . . . . . 126549 GTTAGTTTGCTTGAAGCATGTAAAATGGCTAATCCACAACCTAGTATTGTTTGGGCTTCA V S L L E A C K M A N P Q P S I V W A S L V C L K H V K W L I H N L V L F G L H C - F A - S M - N G - S T T - Y C L G F . . . . . . 126609 TCAAGTTCTGTTTATGGATTGAATTCAAAAGTACCCTTTTCAGAAAAAGATAGAACTGAT S S S V Y G L N S K V P F S E K D R T D Q V L F M D - I Q K Y P F Q K K I E L I I K F C L W I E F K S T L F R K R - N - . . . . . . 126669 CAGCCTGCTAGTTTGTATGCAGCCACTAAAAAGGCTGGTGAAGAAATTGCTCATACATAT Q P A S L Y A A T K K A G E E I A H T Y S L L V C M Q P L K R L V K K L L I H I S A C - F V C S H - K G W - R N C S Y I . . . . . . 126729 AACCATATATATGGTCTTTCGATTACTGGATTGCGGTTTTTCACAGTTTATGGTCCATGG N H I Y G L S I T G L R F F T V Y G P W T I Y M V F R L L D C G F S Q F M V H G - P Y I W S F D Y W I A V F H S L W S M . . . . . . 126789 GGTAGGCCTGATATGGCGTATTTTTTCTTTACAAAAGATATTTTGAGAGGGAAGGAAATC G R P D M A Y F F F T K D I L R G K E I V G L I W R I F S L Q K I F - E G R K S G - A - Y G V F F L Y K R Y F E R E G N . . . . . . 126849 AAGATTTTTGAGACATCTGATCAAGGTAGTGTTGCTAGGGATTTTACTTATGTTGATGAT K I F E T S D Q G S V A R D F T Y V D D R F L R H L I K V V L L G I L L M L M M Q D F - D I - S R - C C - G F Y L C - - . . . . . . 126909 GTGGTAAAGGGTTGTTTGGGAGCACTGGATACTGCGAAAAAGAGCACAGGGAGTGGGGGG V V K G C L G A L D T A K K S T G S G G W - R V V W E H W I L R K R A Q G V G G C G K G L F G S T G Y C E K E H R E W G . . . . . . 126969 AAGAAGAAGGGTGCAGCTCAGTTGAGGATTTTTAATTTAGGTAATACAAAGCCGGTGCCT K K K G A A Q L R I F N L G N T K P V P R R R V Q L S - G F L I - V I Q S R C L E E E G C S S V E D F - F R - Y K A G A . . 127029 GTTGGGAGACTTGTTAGT V G R L V S L G D L L C W E T C - Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-23_AGS-1_PPS_1 (126369 127046) (frame '1'; 678 bp, 226 residues) 1 SLLERSGIMV VKGDINDAVL LRKLFDAVAF THVMHMAAQA GVRYAMQNPG SYVHSNIAGF 61 VSLLEACKMA NPQPSIVWAS SSSVYGLNSK VPFSEKDRTD QPASLYAATK KAGEEIAHTY 121 NHIYGLSITG LRFFTVYGPW GRPDMAYFFF TKDILRGKEI KIFETSDQGS VARDFTYVDD 181 VVKGCLGALD TAKKSTGSGG KKKGAAQLRI FNLGNTKPVP VGRLVS 3-phase translation of AGS-1 (-strand): . . . . . . 127046 ACTAACAAGTCTCCCAACAGGCACCGGCTTTGTATTACCTAAATTAAAAATCCTCAACTG T N K S P N R H R L C I T - I K N P Q L L T S L P T G T G F V L P K L K I L N - - Q V S Q Q A P A L Y Y L N - K S S T . . . . . . 126986 AGCTGCACCCTTCTTCTTCCCCCCACTCCCTGTGCTCTTTTTCGCAGTATCCAGTGCTCC S C T L L L P P T P C A L F R S I Q C S A A P F F F P P L P V L F F A V S S A P E L H P S S S P H S L C S F S Q Y P V L . . . . . . 126926 CAAACAACCCTTTACCACATCATCAACATAAGTAAAATCCCTAGCAACACTACCTTGATC Q T T L Y H I I N I S K I P S N T T L I K Q P F T T S S T - V K S L A T L P - S P N N P L P H H Q H K - N P - Q H Y L D . . . . . . 126866 AGATGTCTCAAAAATCTTGATTTCCTTCCCTCTCAAAATATCTTTTGTAAAGAAAAAATA R C L K N L D F L P S Q N I F C K E K I D V S K I L I S F P L K I S F V K K K Y Q M S Q K S - F P S L S K Y L L - R K N . . . . . . 126806 CGCCATATCAGGCCTACCCCATGGACCATAAACTGTGAAAAACCGCAATCCAGTAATCGA R H I R P T P W T I N C E K P Q S S N R A I S G L P H G P - T V K N R N P V I E T P Y Q A Y P M D H K L - K T A I Q - S . . . . . . 126746 AAGACCATATATATGGTTATATGTATGAGCAATTTCTTCACCAGCCTTTTTAGTGGCTGC K T I Y M V I C M S N F F T S L F S G C R P Y I W L Y V - A I S S P A F L V A A K D H I Y G Y M Y E Q F L H Q P F - W L . . . . . . 126686 ATACAAACTAGCAGGCTGATCAGTTCTATCTTTTTCTGAAAAGGGTACTTTTGAATTCAA I Q T S R L I S S I F F - K G Y F - I Q Y K L A G - S V L S F S E K G T F E F N H T N - Q A D Q F Y L F L K R V L L N S . . . . . . 126626 TCCATAAACAGAACTTGATGAAGCCCAAACAATACTAGGTTGTGGATTAGCCATTTTACA S I N R T - - S P N N T R L W I S H F T P - T E L D E A Q T I L G C G L A I L H I H K Q N L M K P K Q Y - V V D - P F Y . . . . . . 126566 TGCTTCAAGCAAACTAACAAAACCAGCAATATTACTATGAACATAAGAACCTGGATTCTG C F K Q T N K T S N I T M N I R T W I L A S S K L T K P A I L L - T - E P G F C M L Q A N - Q N Q Q Y Y Y E H K N L D S . . . . . . 126506 CATTGCATATCTAACTCCAGCTTGAGCTGCCATATGCATGACATGTGTAAAAGCAACAGC H C I S N S S L S C H M H D M C K S N S I A Y L T P A - A A I C M T C V K A T A A L H I - L Q L E L P Y A - H V - K Q Q . . . . . . 126446 ATCAAACAGCTTCCTCAGCAAAACAGCATCATTAATATCACCCTTAACTACCATAATCCC I K Q L P Q Q N S I I N I T L N Y H N P S N S F L S K T A S L I S P L T T I I P H Q T A S S A K Q H H - Y H P - L P - S . . 126386 AGAACGCTCAAGAAGGCT R T L K K A E R S R R Q N A Q E G Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-23_AGS-1_PPS_1 (127004 126648) (frame '1'; 354 bp, 118 residues) 1 IKNPQLSCTL LLPPTPCALF RSIQCSQTTL YHIINISKIP SNTTLIRCLK NLDFLPSQNI 61 FCKEKIRHIR PTPWTINCEK PQSSNRKTIY MVICMSNFFT SLFSGCIQTS RLISSIFF- >C08HBa0060C12.1-_PGL-23_AGS-1_PPS_2 (126605 126369) (frame '1'; 237 bp, 79 residues) 1 SPNNTRLWIS HFTCFKQTNK TSNITMNIRT WILHCISNSS LSCHMHDMCK SNSIKQLPQQ 61 NSIINITLNY HNPRTLKKA PGL 24 (+ strand): 129576 134872 AGS-1 (129576 129796,130849 130974,132260 132358,134416 134558,134808 134872) SCR (e 1.000 d 0.940 a 0.998,e 1.000 d 0.968 a 0.915,e 1.000 d 0.791 a 0.926,e 1.000 d 0.893 a 0.998,e 1.000) Exon 1 129576 129796 ( 221 n); score: 1.000 Intron 1 129797 130848 (1052 n); Pd: 0.940 Pa: 0.998 Exon 2 130849 130974 ( 126 n); score: 1.000 Intron 2 130975 132259 (1285 n); Pd: 0.968 Pa: 0.915 Exon 3 132260 132358 ( 99 n); score: 1.000 Intron 3 132359 134415 (2057 n); Pd: 0.791 Pa: 0.926 Exon 4 134416 134558 ( 143 n); score: 1.000 Intron 4 134559 134807 ( 249 n); Pd: 0.893 Pa: 0.998 Exon 5 134808 134872 ( 65 n); score: 1.000 PGS (129576 129796,130849 130878) SGN-E207314+ PGS (129589 129796,130849 130974,132260 132358) SGN-E260217+ PGS (129621 129796,130849 130974,132260 132358,134416 134553) SGN-E330259+ PGS (129629 129796,130849 130974,132260 132358,134416 134558,134808 134872) SGN-E271597+ 3-phase translation of AGS-1 (+strand): . . . . . . 129576 TGATTTTACGAAGAAATTTTATAGACCCAAAAACCCAAAATGCCACCTCTCTGAGGAAGA - F Y E E I L - T Q K P K M P P L - G R D F T K K F Y R P K N P K C H L S E E D I L R R N F I D P K T Q N A T S L R K . . . . . . 129636 TGAGTTTTTTTTTTTCTTCTTGTTATAGAACAAATTCAAGAACTTTAATGGGTGGGTATA - V F F F L L V I E Q I Q E L - W V G I E F F F F F L L - N K F K N F N G W V Y M S F F F S S C Y R T N S R T L M G G Y . . . . . . 129696 TGCAGTGAAAGGTGAATAAATCAGCTATGAAAGGAGGTGTCCTTTCGGCTCCTGGTGATT C S E R - I N Q L - K E V S F R L L V I A V K G E - I S Y E R R C P F G S W - L M Q - K V N K S A M K G G V L S A P G D . . . . . : . 129756 ACATCTACTTCAAGTCTCAAGTTCCTCTTCACAAGATCCCT : ATTGGATCAAAGCAGTGGC T S T S S L K F L F T R S L : L D Q S S G H L L Q V S S S S S Q D P : Y W I K A V A Y I Y F K S Q V P L H K I P : I G S K Q W . . . . . . 130868 GATATTATGATTTTGGCCCGAAAGTAGTTCCCCCACTCATTTGCCTCCCTGGCATAGCTG D I M I L A R K - F P H S F A S L A - L I L - F W P E S S S P T H L P P W H S W R Y Y D F G P K V V P P L I C L P G I A . . . . . : . 130928 GTACTGCTGATGTATATTACAAGCAGATAATGTCATTGTCTATGAAG : GGTTACCGTGTAA V L L M Y I T S R - C H C L - R : V T V - Y C - C I L Q A D N V I V Y E : G L P C N G T A D V Y Y K Q I M S L S M K : G Y R V . . . . . . 132273 TTTCCGTTGATATTCCGCGTGCATGGAACAACCACGAGTGGATTCAAGCATTTGAGAAGT F P L I F R V H G T T T S G F K H L R S F R - Y S A C M E Q P R V D S S I - E V I S V D I P R A W N N H E W I Q A F E K . . . : . . . 132333 TTCTAGATGCTATTGATGTTCATCAT : ATTCATCTCTATGGAACAGCCCTTGGAGGCTTCT F - M L L M F I I : F I S M E Q P L E A S S R C Y - C S S : Y S S L W N S P W R L L F L D A I D V H H : I H L Y G T A L G G F . . . . . . 134450 TAGCACAACTTTTTGCTCAGCATCGTCCCCGGCGTGTTAGGTCCTTGGTACTTTCAAATA - H N F L L S I V P G V L G P W Y F Q I S T T F C S A S S P A C - V L G T F K Y L A Q L F A Q H R P R R V R S L V L S N . . . . . : . 134510 CATTTGTGGAGACCACTAGTTTCTCAGCTTCAATGCCATGGGCTCGTAT : TGTTGGTTGGG H L W R P L V S Q L Q C H G L V : L L V G I C G D H - F L S F N A M G S Y : C W L G T F V E T T S F S A S M P W A R I : V G W . . . . . . 134819 CTCCTGCTTTTATACTGAAACGGCATGTGCTAAGTGGAATTCGTGATAGTCCCC L L L L Y - N G M C - V E F V I V P S C F Y T E T A C A K W N S - - S A P A F I L K R H V L S G I R D S P Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-24_AGS-1_PPS_1 (129704 129796,130849 130974,132260 132358,134416 134558,134808 134871) (frame '0'; 525 bp, 175 residues) 1 KVNKSAMKGG VLSAPGDYIY FKSQVPLHKI PIGSKQWRYY DFGPKVVPPL ICLPGIAGTA 61 DVYYKQIMSL SMKGYRVISV DIPRAWNNHE WIQAFEKFLD AIDVHHIHLY GTALGGFLAQ 121 LFAQHRPRRV RSLVLSNTFV ETTSFSASMP WARIVGWAPA FILKRHVLSG IRDSP PGL 25 (+ strand): 137083 137823 AGS-1 (137083 137120,137296 137823) SCR (e 1.000 d 1.000 a 0.997,e 1.000) Exon 1 137083 137120 ( 38 n); score: 1.000 Intron 1 137121 137295 ( 175 n); Pd: 1.000 Pa: 0.997 Exon 2 137296 137823 ( 528 n); score: 1.000 PGS (137083 137120,137296 137823) SGN-E238014+ PGS (137456 137821) SGN-E350939+ PGS (137456 137821) SGN-E356990+ PGS (137456 137821) SGN-E357117+ 3-phase translation of AGS-1 (+strand): . . . . : . . 137083 TTCTATCTAGGCCTGATGAAGTGAATCTTCATCTTCAG : CTACACCTGAGACGTGTTGGTG F Y L G L M K - I F I F S : Y T - D V L V S I - A - - S E S S S S : A T P E T C W C L S R P D E V N L H L Q : L H L R R V G . . . . . . 137318 TTGAAGCTCGACCTGACTTGATCCCTGGTGTTCCAAAGGATGATAGTGGTGGAAGTTCCA L K L D L T - S L V F Q R M I V V E V P - S S T - L D P W C S K G - - W W K F Q V E A R P D L I P G V P K D D S G G S S . . . . . . 137378 AAGAGCCAAACAACGGAAGAAAGGATGCTGATGATTCATCAGAAAATGATAAAAGAGACT K S Q T T E E R M L M I H Q K M I K E T R A K Q R K K G C - - F I R K - - K R L K E P N N G R K D A D D S S E N D K R D . . . . . . 137438 CAGAAACTCCTCCTACAGAAAGTGCAGAGCCCCCCTTGGCTCCAGAAGCTACCGGTTCTC Q K L L L Q K V Q S P P W L Q K L P V L R N S S Y R K C R A P L G S R S Y R F S S E T P P T E S A E P P L A P E A T G S . . . . . . 137498 ACGATTTAGATAACCAACTCCTTAAGATGGCCAAACTCTCCAATGACACAGGTGAATCTG T I - I T N S L R W P N S P M T Q V N L R F R - P T P - D G Q T L Q - H R - I C H D L D N Q L L K M A K L S N D T G E S . . . . . . 137558 TCACACCTCCTTCAGAAAATTCATTTTTCCGTGACAAGCAGAACTTACTAGTCTCGAGAG S H L L Q K I H F S V T S R T Y - S R E H T S F R K F I F P - Q A E L T S L E S V T P P S E N S F F R D K Q N L L V S R . . . . . . 137618 CTATTCTAAACATCACTTGTGAGATTTTTATTCTTAATATGCTGTCCCTTTACTTAGGGA L F - T S L V R F L F L I C C P F T - G Y S K H H L - D F Y S - Y A V P L L R E A I L N I T C E I F I L N M L S L Y L G . . . . . . 137678 ACTGTACATTAACTGAAAATGTAGCTGCAATGTAGACGCTTGATGGGATAGAATTTTTGT T V H - L K M - L Q C R R L M G - N F C L Y I N - K C S C N V D A - W D R I F V N C T L T E N V A A M - T L D G I E F L . . . . . . 137738 TCCTCAGTTTCTTTCTGTACATTATGGGTTGGAAAAGTGTCATTGCAAAGACACTATGAA S S V S F C T L W V G K V S L Q R H Y E P Q F L S V H Y G L E K C H C K D T M K F L S F F L Y I M G W K S V I A K T L - . . . 137798 ATTGAAGACTCAAGTTTGTGTTGGAA I E D S S L C W L K T Q V C V G N - R L K F V L E Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-25_AGS-1_PPS_1 (137085 137120,137296 137712) (frame '0'; 450 bp, 150 residues) 1 LSRPDEVNLH LQLHLRRVGV EARPDLIPGV PKDDSGGSSK EPNNGRKDAD DSSENDKRDS 61 ETPPTESAEP PLAPEATGSH DLDNQLLKMA KLSNDTGESV TPPSENSFFR DKQNLLVSRA 121 ILNITCEIFI LNMLSLYLGN CTLTENVAAM - PGL 26 (+ strand): 143841 144437 AGS-1 (143841 144437) SCR (e 1.000) Exon 1 143841 144437 ( 597 n); score: 1.000 PGS (143841 144437) SGN-E317105+ 3-phase translation of AGS-1 (+strand): . . . . . . 143841 TTTTCTTTAACTAACTCTCTTTTCTCCTTTGACAATTCACACCAATAAACTCATTTTTCT F S L T N S L F S F D N S H Q - T H F S F L - L T L F S P L T I H T N K L I F L F F N - L S F L L - Q F T P I N S F F . . . . . . 143901 GTCTCTCCACTGTGAAGCACCATTGAAATCCCAATGCAAAAGCTCACTAATACTTCATAA V S P L - S T I E I P M Q K L T N T S - S L H C E A P L K S Q C K S S L I L H K C L S T V K H H - N P N A K A H - Y F I . . . . . . 143961 AAAACTCAACTTTTCACTCAAATCTGAAAGTTCACAAAGATCAGAGAAATGGGGGTTAAT K T Q L F T Q I - K F T K I R E M G V N K L N F S L K S E S S Q R S E K W G L M K N S T F H S N L K V H K D Q R N G G - . . . . . . 144021 GATTTTGTTTTTATTTTCATTTTTACTCTGTTTGTTCTTGGATTTTCTTGCATAGAACCT D F V F I F I F T L F V L G F S C I E P I L F L F S F L L C L F L D F L A - N L - F C F Y F H F Y S V C S W I F L H R T . . . . . . 144081 GTTTGTGGAAATGCTGAGGTGAGAGCTTTAATGGAGATTAAATCAGCTTTGGACCCAGAA V C G N A E V R A L M E I K S A L D P E F V E M L R - E L - W R L N Q L W T Q K C L W K C - G E S F N G D - I S F G P R . . . . . . 144141 AGCAAGAAACTTTCTTCATGGACAAGTGATGGTGATCCATGTAGTGGTTCTTTTCTTGGA S K K L S S W T S D G D P C S G S F L G A R N F L H G Q V M V I H V V V L F L E K Q E T F F M D K - W - S M - W F F S W . . . . . . 144201 GTGATTTGTAATGAACATCATAAAGTAACAAATATTACTCTGACAGATAAAGGACTTACT V I C N E H H K V T N I T L T D K G L T - F V M N I I K - Q I L L - Q I K D L L S D L - - T S - S N K Y Y S D R - R T Y . . . . . . 144261 GGAAAGTTGTCACCAGCAATTGCTGAGCTGAAGTGTCTGTCTGGTCTGTTCTTGCATTAT G K L S P A I A E L K C L S G L F L H Y E S C H Q Q L L S - S V C L V C S C I I W K V V T S N C - A E V S V W S V L A L . . . . . . 144321 AATTCTTTAACAGGGGAAATACCAAAGGAACTTGGGAATTTGACTGAGTTGAATGATCTT N S L T G E I P K E L G N L T E L N D L I L - Q G K Y Q R N L G I - L S - M I F - F F N R G N T K G T W E F D - V E - S . . . . . . 144381 TATCTCAATGTGAACAATCTTTCTGGGATTATACCACCAGAACTTGGAAACATGGAA Y L N V N N L S G I I P P E L G N M E I S M - T I F L G L Y H Q N L E T W L S Q C E Q S F W D Y T T R T W K H G Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-26_AGS-1_PPS_1 (143988 144437) (frame '1'; 450 bp, 150 residues) 1 KFTKIREMGV NDFVFIFIFT LFVLGFSCIE PVCGNAEVRA LMEIKSALDP ESKKLSSWTS 61 DGDPCSGSFL GVICNEHHKV TNITLTDKGL TGKLSPAIAE LKCLSGLFLH YNSLTGEIPK 121 ELGNLTELND LYLNVNNLSG IIPPELGNME 3-phase translation of AGS-1 (-strand): . . . . . . 144437 TTCCATGTTTCCAAGTTCTGGTGGTATAATCCCAGAAAGATTGTTCACATTGAGATAAAG F H V S K F W W Y N P R K I V H I E I K S M F P S S G G I I P E R L F T L R - R P C F Q V L V V - S Q K D C S H - D K . . . . . . 144377 ATCATTCAACTCAGTCAAATTCCCAAGTTCCTTTGGTATTTCCCCTGTTAAAGAATTATA I I Q L S Q I P K F L W Y F P C - R I I S F N S V K F P S S F G I S P V K E L - D H S T Q S N S Q V P L V F P L L K N Y . . . . . . 144317 ATGCAAGAACAGACCAGACAGACACTTCAGCTCAGCAATTGCTGGTGACAACTTTCCAGT M Q E Q T R Q T L Q L S N C W - Q L S S C K N R P D R H F S S A I A G D N F P V N A R T D Q T D T S A Q Q L L V T T F Q . . . . . . 144257 AAGTCCTTTATCTGTCAGAGTAATATTTGTTACTTTATGATGTTCATTACAAATCACTCC K S F I C Q S N I C Y F M M F I T N H S S P L S V R V I F V T L - C S L Q I T P - V L Y L S E - Y L L L Y D V H Y K S L . . . . . . 144197 AAGAAAAGAACCACTACATGGATCACCATCACTTGTCCATGAAGAAAGTTTCTTGCTTTC K K R T T T W I T I T C P - R K F L A F R K E P L H G S P S L V H E E S F L L S Q E K N H Y M D H H H L S M K K V S C F . . . . . . 144137 TGGGTCCAAAGCTGATTTAATCTCCATTAAAGCTCTCACCTCAGCATTTCCACAAACAGG W V Q S - F N L H - S S H L S I S T N R G S K A D L I S I K A L T S A F P Q T G L G P K L I - S P L K L S P Q H F H K Q . . . . . . 144077 TTCTATGCAAGAAAATCCAAGAACAAACAGAGTAAAAATGAAAATAAAAACAAAATCATT F Y A R K S K N K Q S K N E N K N K I I S M Q E N P R T N R V K M K I K T K S L V L C K K I Q E Q T E - K - K - K Q N H . . . . . . 144017 AACCCCCATTTCTCTGATCTTTGTGAACTTTCAGATTTGAGTGAAAAGTTGAGTTTTTTA N P H F S D L C E L S D L S E K L S F L T P I S L I F V N F Q I - V K S - V F Y - P P F L - S L - T F R F E - K V E F F . . . . . . 143957 TGAAGTATTAGTGAGCTTTTGCATTGGGATTTCAATGGTGCTTCACAGTGGAGAGACAGA - S I S E L L H W D F N G A S Q W R D R E V L V S F C I G I S M V L H S G E T E M K Y - - A F A L G F Q W C F T V E R Q . . . . . . 143897 AAAATGAGTTTATTGGTGTGAATTGTCAAAGGAGAAAAGAGAGTTAGTTAAAGAAAA K M S L L V - I V K G E K R V S - R K K - V Y W C E L S K E K R E L V K E K N E F I G V N C Q R R K E S - L K K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-26_AGS-1_PPS_1 (144217 143978) (frame '2'; 237 bp, 79 residues) 1 CSLQITPRKE PLHGSPSLVH EESFLLSGSK ADLISIKALT SAFPQTGSMQ ENPRTNRVKM 61 KIKTKSLTPI SLIFVNFQI- PGL 27 (- strand): 148305 147856 AGS-1 (148305 147856) SCR (e 0.993) Exon 1 148305 147856 ( 450 n); score: 0.993 PGS (148305 147856) SGN-E354033- 3-phase translation of AGS-1 (-strand): . . . . . . 148305 AAAGATCAAATAATGGTATAAGTTCATTAGCTTCCTCTTATCACTTCTGAGCTAGAGCTA K D Q I M V - V H - L P L I T S E L E L K I K - W Y K F I S F L L S L L S - S Y R S N N G I S S L A S S Y H F - A R A . . . . . . 148245 CAACAATCAACAACACCAAGTGGTGTCCTTCAAACCATACAAAGAATTTGTTCAATCCGC Q Q S T T P S G V L Q T I Q R I C S I R N N Q Q H Q V V S F K P Y K E F V Q S A T T I N N T K W C P S N H T K N L F N P . . . . . . 148185 CTCATTATGTACAGAAGCAAGTGATGTTGCATAATACAATAGATAGATAACTGCAACTCT L I M Y R S K - C C I I Q - I D N C N S S L C T E A S D V A - Y N R - I T A T L P H Y V Q K Q V M L H N T I D R - L Q L . . . . . . 148125 ATCGCTTTGGCACTTGTTTCCCTATGGTTAATAATCATCAACAGCTTTCAACGCGGACAT I A L A L V S L W L I I I N S F Q R G H S L W H L F P Y G - - S S T A F N A D M Y R F G T C F P M V N N H Q Q L S T R T . . . . . . 148065 GTTTCCTTTTTCAACCACCACTACATCTGTTCAATTCTTCATTTACTAAAACCATACTTG V S F F N H H Y I C S I L H L L K P Y L F P F S T T T T S V Q F F I Y - N H T W C F L F Q P P L H L F N S S F T K T I L . . . . . . 148005 GCCTGCTATCTGGATCCTCGACAGTGCAACTTACTGCAAGTTTAGTTAGCATAGTTGCTT A C Y L D P R Q C N L L Q V - L A - L L P A I W I L D S A T Y C K F S - H S C F G L L S G S S T V Q L T A S L V S I V A . . . . . . 147945 CACTTATGGGGAATGTATCCTTGATATTAGGGTCAATGAAGTTCTCAAAGTTACAAGATT H L W G M Y P - Y - G Q - S S Q S Y K I T Y G E C I L D I R V N E V L K V T R F S L M G N V S L I L G S M K F S K L Q D . . . 147885 CAGCTGCAAGTCTCATTGAGCAGTCCAGAA Q L Q V S L S S P E S C K S H - A V Q S A A S L I E Q S R Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-27_AGS-1_PPS_1 (148135 147857) (frame '0'; 279 bp, 93 residues) 1 LQLYRFGTCF PMVNNHQQLS TRTCFLFQPP LHLFNSSFTK TILGLLSGSS TVQLTASLVS 61 IVASLMGNVS LILGSMKFSK LQDSAASLIE QSR 3-phase translation of AGS-1 (+strand): . . . . . . 147856 TTCTGGACTGCTCAATGAGACTTGCAGCTGAATCTTGTAACTTTGAGAACTTCATTGACC F W T A Q - D L Q L N L V T L R T S L T S G L L N E T C S - I L - L - E L H - P L D C S M R L A A E S C N F E N F I D . . . . . . 147916 CTAATATCAAGGATACATTCCCCATAAGTGAAGCAACTATGCTAACTAAACTTGCAGTAA L I S R I H S P - V K Q L C - L N L Q - - Y Q G Y I P H K - S N Y A N - T C S K P N I K D T F P I S E A T M L T K L A V . . . . . . 147976 GTTGCACTGTCGAGGATCCAGATAGCAGGCCAAGTATGGTTTTAGTAAATGAAGAATTGA V A L S R I Q I A G Q V W F - - M K N - L H C R G S R - Q A K Y G F S K - R I E S C T V E D P D S R P S M V L V N E E L . . . . . . 148036 ACAGATGTAGTGGTGGTTGAAAAAGGAAACATGTCCGCGTTGAAAGCTGTTGATGATTAT T D V V V V E K G N M S A L K A V D D Y Q M - W W L K K E T C P R - K L L M I I N R C S G G - K R K H V R V E S C - - L . . . . . . 148096 TAACCATAGGGAAACAAGTGCCAAAGCGATAGAGTTGCAGTTATCTATCTATTGTATTAT - P - G N K C Q S D R V A V I Y L L Y Y N H R E T S A K A I E L Q L S I Y C I M L T I G K Q V P K R - S C S Y L S I V L . . . . . . 148156 GCAACATCACTTGCTTCTGTACATAATGAGGCGGATTGAACAAATTCTTTGTATGGTTTG A T S L A S V H N E A D - T N S L Y G L Q H H L L L Y I M R R I E Q I L C M V - C N I T C F C T - - G G L N K F F V W F . . . . . . 148216 AAGGACACCACTTGGTGTTGTTGATTGTTGTAGCTCTAGCTCAGAAGTGATAAGAGGAAG K D T T W C C - L L - L - L R S D K R K R T P L G V V D C C S S S S E V I R G S E G H H L V L L I V V A L A Q K - - E E . . . 148276 CTAATGAACTTATACCATTATTTGATCTTT L M N L Y H Y L I F - - T Y T I I - S A N E L I P L F D L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-27_AGS-1_PPS_1 (147858 148055) (frame '0'; 195 bp, 65 residues) 1 LDCSMRLAAE SCNFENFIDP NIKDTFPISE ATMLTKLAVS CTVEDPDSRP SMVLVNEELN 61 RCSGG- PGL 28 (- strand): 149100 148725 AGS-1 (149100 148725) SCR (e 0.991) Exon 1 149100 148725 ( 376 n); score: 0.991 PGS (149100 148725) SGN-E224229- PGS (149035 148730) SGN-E224103- 3-phase translation of AGS-1 (-strand): . . . . . . 149100 CCAGGCAATTAAACCAGAGTGGTGGCCTGCTGAATGGTTATCAGATCAACAAGAACAGAG P G N - T R V V A C - M V I R S T R T E Q A I K P E W W P A E W L S D Q Q E Q S R Q L N Q S G G L L N G Y Q I N K N R . . . . . . 149040 TGCAACTGCATAGAGTGAACCTCTATTTATCGACTGTCCATCACATCCTGCCAAAGTTGC C N C I E - T S I Y R L S I T S C Q S C A T A - S E P L F I D C P S H P A K V A V Q L H R V N L Y L S T V H H I L P K L . . . . . . 148980 CTACAACTCCCTTCATGTTTCGGAATTCCCTTTTTTGAGGATCATCAGTTCTTGGATACG L Q L P S C F G I P F F E D H Q F L D T Y N S L H V S E F P F L R I I S S W I R P T T P F M F R N S L F - G S S V L G Y . . . . . . 148920 AAGAATGGTAATAATCAGACGAGAGTTCTTTGAAATAGCAGTTGATGTTTTTGTTGTACA K N G N N Q T R V L - N S S - C F C C T R M V I I R R E F F E I A V D V F V V Q E E W - - S D E S S L K - Q L M F L L Y . . . . . . 148860 ACTATGTTCTGTTTACTGATGTAATAATCAAACATGTCGAAGTTAGAATCACGTAGTATG T M F C L L M - - S N M S K L E S R S M L C S V Y - C N N Q T C R S - N H V V C N Y V L F T D V I I K H V E V R I T - Y . . . . . . 148800 TTGGCCGTGTGAGCGCTTACTCAAACTCAACTCATTTGGTAAATACTTTTTAATCTGTTC L A V - A L T Q T Q L I W - I L F N L F W P C E R L L K L N S F G K Y F L I C S V G R V S A Y S N S T H L V N T F - S V . . 148740 TCACAGCTTCAGTAAA S Q L Q - H S F S K L T A S V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 148725 TTTACTGAAGCTGTGAGAACAGATTAAAAAGTATTTACCAAATGAGTTGAGTTTGAGTAA F T E A V R T D - K V F T K - V E F E - L L K L - E Q I K K Y L P N E L S L S K Y - S C E N R L K S I Y Q M S - V - V . . . . . . 148785 GCGCTCACACGGCCAACATACTACGTGATTCTAACTTCGACATGTTTGATTATTACATCA A L T R P T Y Y V I L T S T C L I I T S R S H G Q H T T - F - L R H V - L L H Q S A H T A N I L R D S N F D M F D Y Y I . . . . . . 148845 GTAAACAGAACATAGTTGTACAACAAAAACATCAACTGCTATTTCAAAGAACTCTCGTCT V N R T - L Y N K N I N C Y F K E L S S - T E H S C T T K T S T A I S K N S R L S K Q N I V V Q Q K H Q L L F Q R T L V . . . . . . 148905 GATTATTACCATTCTTCGTATCCAAGAACTGATGATCCTCAAAAAAGGGAATTCCGAAAC D Y Y H S S Y P R T D D P Q K R E F R N I I T I L R I Q E L M I L K K G N S E T - L L P F F V S K N - - S S K K G I P K . . . . . . 148965 ATGAAGGGAGTTGTAGGCAACTTTGGCAGGATGTGATGGACAGTCGATAAATAGAGGTTC M K G V V G N F G R M - W T V D K - R F - R E L - A T L A G C D G Q S I N R G S H E G S C R Q L W Q D V M D S R - I E V . . . . . . 149025 ACTCTATGCAGTTGCACTCTGTTCTTGTTGATCTGATAACCATTCAGCAGGCCACCACTC T L C S C T L F L L I - - P F S R P P L L Y A V A L C S C - S D N H S A G H H S H S M Q L H S V L V D L I T I Q Q A T T . . 149085 TGGTTTAATTGCCTGG W F N C L G L I A W L V - L P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 29 (- strand): 154168 150315 AGS-1 (154168 153473,150445 150315) SCR (e 1.000 d 1.000 a 1.000,e 0.969) Exon 1 154168 153473 ( 696 n); score: 1.000 Intron 1 153472 150446 (3027 n); Pd: 1.000 Pa: 1.000 Exon 2 150445 150315 ( 131 n); score: 0.969 PGS (153578 153473,150445 150315) SGN-E207156+ PGS (153841 153473) SGN-E253306+ PGS (154168 153512) SGN-E253069+ 3-phase translation of AGS-1 (-strand): . . . . . . 154168 TTACCGCCCCACCGCTCCTCCATTTAAGTTATTCGAAAGCTGTCTAATGTTTTCTCTGTG L P P H R S S I - V I R K L S N V F S V Y R P T A P P F K L F E S C L M F S L W T A P P L L H L S Y S K A V - C F L C . . . . . . 154108 GGGAATTTCATCGAACACCTAACACCCAACATCTTTTTTTTTTTAATTATTCAACACCTA G N F I E H L T P N I F F F L I I Q H L G I S S N T - H P T S F F F - L F N T - G E F H R T P N T Q H L F F F N Y S T P . . . . . . 154048 ACAGCTAACTTCCTTCTTTATTCACCACGTAGCACCGTCTAAATCCACGTGTCCGTCAAC T A N F L L Y S P R S T V - I H V S V N Q L T S F F I H H V A P S K S T C P S T N S - L P S L F T T - H R L N P R V R Q . . . . . . 153988 CAATTTTCATATACCCGCCGTCTTCACCGCTCTGCAACCACCATCGCCGCCAGCAATGTA Q F S Y T R R L H R S A T T I A A S N V N F H I P A V F T A L Q P P S P P A M Y P I F I Y P P S S P L C N H H R R Q Q C . . . . . . 153928 CCGTTTGAAACGATCTCTTCATTTCTTCAAACCCAAAAATTCAACTTTTATCAATTCTTC P F E T I S S F L Q T Q K F N F Y Q F F R L K R S L H F F K P K N S T F I N S S T V - N D L F I S S N P K I Q L L S I L . . . . . . 153868 CATACGCTTCTCTCATCAATCCCAGCTCGAAAATGCCGGCCCCATGGCTTCCCGTCTCAA H T L L S S I P A R K C R P H G F P S Q I R F S H Q S Q L E N A G P M A S R L K P Y A S L I N P S S K M P A P W L P V S . . . . . . 153808 GACCCGATCCGTTATCCGTTTTACAGGACCTGACACGGTTAAATTCCTTCAGGGTCTTGT D P I R Y P F Y R T - H G - I P S G S C T R S V I R F T G P D T V K F L Q G L V R P D P L S V L Q D L T R L N S F R V L . . . . . . 153748 TACCAATGATCTACGGAGGTTAGAAAATCCACAACCCGAAGATAGGACCACTTTGGCCAC Y Q - S T E V R K S T T R R - D H F G H T N D L R R L E N P Q P E D R T T L A T L P M I Y G G - K I H N P K I G P L W P . . . . . . 153688 TACCAACGCGCCGTTTGTTTCGGTTTCTCCGGTGTATGCTGCTCTTTTGACTGCTCAAGG Y Q R A V C F G F S G V C C S F D C S R T N A P F V S V S P V Y A A L L T A Q G L P T R R L F R F L R C M L L F - L L K . . . . . . 153628 AAGGTTTTTGTATGATATGTTCTTGTATAGGCCGCCTCGAGCTGATGAGAAGCTTGATCG K V F V - Y V L V - A A S S - - E A - S R F L Y D M F L Y R P P R A D E K L D R E G F C M I C S C I G R L E L M R S L I . . . . . . 153568 AACTGGTTCAGGGCCTGGCCCTGATTCTGGGGAGCTGGAATTGTTTGCTGATGTTGATGG N W F R A W P - F W G A G I V C - C - W T G S G P G P D S G E L E L F A D V D G E L V Q G L A L I L G S W N C L L M L M . . . . : . . 153508 TTCTGAATTGGACGAGCTTCTGCAGACACTGAAAAA : GTATCGGTTGAGGTCTAAGGTTGA F - I G R A S A D T E K : V S V E V - G - S E L D E L L Q T L K K : Y R L R S K V E V L N W T S F C R H - K : S I G - G L R L . . . . . . 150421 AATAGAGAGCGTGGTTGATGATTTCTCTTGCTGGCAGAGGTTTGGCCAATATTTAACTCA N R E R G - - F L L L A E V W P I F N S I E S V V D D F S C W Q R F G Q Y L T Q K - R A W L M I S L A G R G L A N I - L . . . . . 150361 GAAGTCCTCTGAAGAGCCAGATGCTGCCTCCCTTGGATGGGGTGGTG E V L - R A R C C L P W M G W K S S E E P D A A S L G W G G R S P L K S Q M L P P L D G V V Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-29_AGS-1_PPS_1 (154047 153473,150445 150316) (frame '2'; 705 bp, 235 residues) 1 QLTSFFIHHV APSKSTCPST NFHIPAVFTA LQPPSPPAMY RLKRSLHFFK PKNSTFINSS 61 IRFSHQSQLE NAGPMASRLK TRSVIRFTGP DTVKFLQGLV TNDLRRLENP QPEDRTTLAT 121 TNAPFVSVSP VYAALLTAQG RFLYDMFLYR PPRADEKLDR TGSGPGPDSG ELELFADVDG 181 SELDELLQTL KKYRLRSKVE IESVVDDFSC WQRFGQYLTQ KSSEEPDAAS LGWGG PGL 30 (+ strand): 160406 161120 AGS-1 (160406 160427,160508 161120) SCR (e 1.000 d 0.974 a 0.997,e 1.000) Exon 1 160406 160427 ( 22 n); score: 1.000 Intron 1 160428 160507 ( 80 n); Pd: 0.974 Pa: 0.997 Exon 2 160508 161120 ( 613 n); score: 1.000 PGS (160406 160427,160508 161120) SGN-E214364+ PGS (160406 160427,160508 160961) SGN-E206853+ 3-phase translation of AGS-1 (+strand): . . . : . . . 160406 TTATATTGATACTGTTAAATCT : TGTGAGATTTTTCGAGAATCGAGTGTAGCGGAGATGAT L Y - Y C - I : L - D F S R I E C S G D D Y I D T V K S : C E I F R E S S V A E M I I L I L L N L : V R F F E N R V - R R - . . . . . . 160546 ATCGGCTATGGCTGCAGGATGGGATGCTCAGATGATTGTAGAAACATGGTCGAGAGGTGG I G Y G C R M G C S D D C R N M V E R W S A M A A G W D A Q M I V E T W S R G G Y R L W L Q D G M L R - L - K H G R E V . . . . . . 160606 GGTTATGGCTACAAGTATTGGGTTGGCTGTGGCAAATTATCATACAGGTGGTAGGCATAT G Y G Y K Y W V G C G K L S Y R W - A Y V M A T S I G L A V A N Y H T G G R H I G L W L Q V L G W L W Q I I I Q V V G I . . . . . . 160666 ATGTGTAGTACCAGATGAAGATTCAAGAACAGAGTATGTAGAAGCTATGGAAAACGCAGG M C S T R - R F K N R V C R S Y G K R R C V V P D E D S R T E Y V E A M E N A G Y V - Y Q M K I Q E Q S M - K L W K T Q . . . . . . 160726 GATGTCGCCGGAAGTTGTGATCGGAGAACCGGAAGAAGCGATGGATGGGTTGATTGGGAT D V A G S C D R R T G R S D G W V D W D M S P E V V I G E P E E A M D G L I G I G C R R K L - S E N R K K R W M G - L G . . . . . . 160786 TGATTTTTTGGTGGTGGATTGTAGAAGAAATGATTTCGGTAGAATTTTGGGGGTTGCTAA - F F G G G L - K K - F R - N F G G C - D F L V V D C R R N D F G R I L G V A K L I F W W W I V E E M I S V E F W G L L . . . . . . 160846 ATTAGGACATAGAGGTGCAGTTTTGATTTGTAAAAATGCAAGTTCAAGAATTGCTTCTGA I R T - R C S F D L - K C K F K N C F - L G H R G A V L I C K N A S S R I A S D N - D I E V Q F - F V K M Q V Q E L L L . . . . . . 160906 TTTCAGGTGGCGGAGTGTTCTTGACGGAAAATCAAGAATTGTTCGCTCGGTTTTTCTGCC F Q V A E C S - R K I K N C S L G F S A F R W R S V L D G K S R I V R S V F L P I S G G G V F L T E N Q E L F A R F F C . . . . . . 160966 GGTAGGTAAAGGTTTGGATATTGCTCATATCGGAGCCACCGTGACCGGCGGCGGAAAAAA G R - R F G Y C S Y R S H R D R R R K K V G K G L D I A H I G A T V T G G G K K R - V K V W I L L I S E P P - P A A E K . . . . . . 161026 GGGTGGCTCCGGGAAGACAGAAAGTCGATGGATTAGACATTTTGATAGAGATTCAGGGGA G W L R E D R K S M D - T F - - R F R G G G S G K T E S R W I R H F D R D S G E R V A P G R Q K V D G L D I L I E I Q G . . . . 161086 AGAATTTGTGATACGCAAGTGATGACGTCCATAAT R I C D T Q V M T S I E F V I R K - - R P - K N L - Y A S D D V H N Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-30_AGS-1_PPS_1 (160407 160427,160508 161107) (frame '2'; 618 bp, 206 residues) 1 YIDTVKSCEI FRESSVAEMI SAMAAGWDAQ MIVETWSRGG VMATSIGLAV ANYHTGGRHI 61 CVVPDEDSRT EYVEAMENAG MSPEVVIGEP EEAMDGLIGI DFLVVDCRRN DFGRILGVAK 121 LGHRGAVLIC KNASSRIASD FRWRSVLDGK SRIVRSVFLP VGKGLDIAHI GATVTGGGKK 181 GGSGKTESRW IRHFDRDSGE EFVIRK- PGL 31 (+ strand): 162500 162732 AGS-1 (162500 162732) SCR (e 0.938) Exon 1 162500 162732 ( 233 n); score: 0.938 PGS (162500 162732) SGN-E309603- 3-phase translation of AGS-1 (+strand): . . . . . . 162500 TTATAAAAGTACAATGAATTCCGTGCTAAGAAATTTAAAGGTTGAACTCGTACAATAAAA L - K Y N E F R A K K F K G - T R T I K Y K S T M N S V L R N L K V E L V Q - K I K V Q - I P C - E I - R L N S Y N K . . . . . . 162560 ATCTTGAATCAGCCTCTCACACACACGATACGGTACATAAAGAAATGGGCGTCTGCGTTA I L N Q P L T H T I R Y I K K W A S A L S - I S L S H T R Y G T - R N G R L R Y N L E S A S H T H D T V H K E M G V C V . . . . . . 162620 TTCTTTTCTTTGTAACTACAGAGGCAATACTCACCCAAGACCTAAGTTTACCTGTCCAAT F F S L - L Q R Q Y S P K T - V Y L S N S F L C N Y R G N T H P R P K F T C P I I L F F V T T E A I L T Q D L S L P V Q . . . . . . 162680 ATCAACATCTTCAGAAAGTACAAGATACTTTGATGGCCAATGTCTACATTCTT I N I F R K Y K I L - W P M S T F S T S S E S T R Y F D G Q C L H S Y Q H L Q K V Q D T L M A N V Y I L Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-31_AGS-1_PPS_1 (162538 162732) (frame '0'; 195 bp, 65 residues) 1 RLNSYNKNLE SASHTHDTVH KEMGVCVILF FVTTEAILTQ DLSLPVQYQH LQKVQDTLMA 61 NVYIL 3-phase translation of AGS-1 (-strand): . . . . . . 162732 AAGAATGTAGACATTGGCCATCAAAGTATCTTGTACTTTCTGAAGATGTTGATATTGGAC K N V D I G H Q S I L Y F L K M L I L D R M - T L A I K V S C T F - R C - Y W T E C R H W P S K Y L V L S E D V D I G . . . . . . 162672 AGGTAAACTTAGGTCTTGGGTGAGTATTGCCTCTGTAGTTACAAAGAAAAGAATAACGCA R - T - V L G E Y C L C S Y K E K N N A G K L R S W V S I A S V V T K K R I T Q Q V N L G L G - V L P L - L Q R K E - R . . . . . . 162612 GACGCCCATTTCTTTATGTACCGTATCGTGTGTGTGAGAGGCTGATTCAAGATTTTTATT D A H F F M Y R I V C V R G - F K I F I T P I S L C T V S C V - E A D S R F L L R R P F L Y V P Y R V C E R L I Q D F Y . . . . . . 162552 GTACGAGTTCAACCTTTAAATTTCTTAGCACGGAATTCATTGTACTTTTATAA V R V Q P L N F L A R N S L Y F Y Y E F N L - I S - H G I H C T F I C T S S T F K F L S T E F I V L L - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 32 (- strand): 166092 164189 AGS-1 (166092 165706,164248 164189) SCR (e 0.984 d 0.960 a 0.993,e 1.000) Exon 1 166092 165706 ( 387 n); score: 0.984 Intron 1 165705 164249 (1457 n); Pd: 0.960 Pa: 0.993 Exon 2 164248 164189 ( 60 n); score: 1.000 PGS (166092 165706,164248 164189) SGN-E577826+ PGS (165975 165706,164248 164217) SGN-E240893+ 3-phase translation of AGS-1 (-strand): . . . . . . 166092 ATATTTTACAATTAGATCATGGGCTTCTAAGACTCACCATTATTAGGATTGGGCTTCAAT I F Y N - I M G F - D S P L L G L G F N Y F T I R S W A S K T H H Y - D W A S I I L Q L D H G L L R L T I I R I G L Q . . . . . . 166032 TTTTGCACCGGAAAATGGCATCATTCAGAACTACGACAAGCTTTCTCGTCCGGGAAATTT F C T G K W H H S E L R Q A F S S G K F F A P E N G I I Q N Y D K L S R P G N F F L H R K M A S F R T T T S F L V R E I . . . . . . 165972 TCCGTCCGTCAATACACTTCCCAAATGTTGTTCGCTTCATCCACATCTCGCCGGCACCGT S V R Q Y T S Q M L F A S S T S R R H R P S V N T L P K C C S L H P H L A G T V F R P S I H F P N V V R F I H I S P A P . . . . . . 165912 ACCTGGAGACGAACCTTGTTGTGAGTCATCGAATTTTATCACGGAGTCTCTCTTTTAGTC T W R R T L L - V I E F Y H G V S L L V P G D E P C C E S S N F I T E S L F - S Y L E T N L V V S H R I L S R S L S F S . . . . . . 165852 CGGTTAGGTGTGCGGCGGCGTCCAAAGGTGGTGCTGATGATGGAAAGAAGTCTCCGGCGC R L G V R R R P K V V L M M E R S L R R G - V C G G V Q R W C - - W K E V S G A P V R C A A A S K G G A D D G K K S P A . . . . . . 165792 GGCTTGCTCAGGTTCAACAGCTGTTACATGAAGCTAAGGAGCGATCTCAAGCTGCGGGAA G L L R F N S C Y M K L R S D L K L R E A C S G S T A V T - S - G A I S S C G K R L A Q V Q Q L L H E A K E R S Q A A G . . . : . . . 165732 ACGATCCTATTCCTAAGATTACTCTTG : ATCACGTGACTGTCAACTTTGCAAGAAGTGGAG T I L F L R L L L : I T - L S T L Q E V E R S Y S - D Y S - : S R D C Q L C K K W R N D P I P K I T L : D H V T V N F A R S G . . . 164215 GTCCTGGAGGTCAAAATGTCAATAAAG V L E V K M S I K S W R S K C Q - G P G G Q N V N K Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1-_PGL-32_AGS-1_PPS_1 (166090 165706,164248 164190) (frame '0'; 444 bp, 148 residues) 1 ILQLDHGLLR LTIIRIGLQF LHRKMASFRT TTSFLVREIF RPSIHFPNVV RFIHISPAPY 61 LETNLVVSHR ILSRSLSFSP VRCAAASKGG ADDGKKSPAR LAQVQQLLHE AKERSQAAGN 121 DPIPKITLDH VTVNFARSGG PGGQNVNK PGL 33 (+ strand): 166739 167256 AGS-1 (166739 167256) SCR (e 0.988) Exon 1 166739 167256 ( 518 n); score: 0.988 PGS (166739 167256) SGN-E203331+ PGS (166739 167222) SGN-E203206+ 3-phase translation of AGS-1 (+strand): . . . . . . 166739 TTAGAAATGTTTAAGGAAAACAAGCAGAGAACCGTATAATAGCCTCTCTTTTTTTTAATT L E M F K E N K Q R T V - - P L F F L I - K C L R K T S R E P Y N S L S F F - L R N V - G K Q A E N R I I A S L F F N . . . . . . 166799 GTTTGGAAGTTGATTTACATCATTTTCACAGAATCGAGCCTGCAGATGGTTCACAATTCT V W K L I Y I I F T E S S L Q M V H N S F G S - F T S F S Q N R A C R W F T I L C L E V D L H H F H R I E P A D G S Q F . . . . . . 166859 ATAATCGAACGAGCAAGACAAAGAATAACCTACCTATGTTTATTAAGCTGCAAAACATAT I I E R A R Q R I T Y L C L L S C K T Y - S N E Q D K E - P T Y V Y - A A K H I Y N R T S K T K N N L P M F I K L Q N I . . . . . . 166919 TCAATTAACCAAAATTATAAGGTACTAATATTATGTGACTATGTCGAAACATCCCTGACC S I N Q N Y K V L I L C D Y V E T S L T Q L T K I I R Y - Y Y V T M S K H P - P F N - P K L - G T N I M - L C R N I P D . . . . . . 166979 ATTCTCTCTCATACCACCCAGTTAAAGGAGCGGGAGCGGCCACACATTATAACAGCTACA I L S H T T Q L K E R E R P H I I T A T F S L I P P S - R S G S G H T L - Q L H H S L S Y H P V K G A G A A T H Y N S Y . . . . . . 167039 CAAACTTGCTACAATGATTATTCAACGGTAGCATGCAGGAAGGATAACGGCATGACGTCT Q T C Y N D Y S T V A C R K D N G M T S K L A T M I I Q R - H A G R I T A - R L T N L L Q - L F N G S M Q E G - R H D V . . . . . . 167099 TTCTGCAAAAGAAAAGCAGAATAACAAGATGCTAGAGCAGCTACTATTCATGACTACACA F C K R K A E - Q D A R A A T I H D Y T S A K E K Q N N K M L E Q L L F M T T H F L Q K K S R I T R C - S S Y Y S - L H . . . . . . 167159 TTGTGAAGTAGCAAATGACTTTTGCAACAGATGCATCAACATTTCTTAGATCGATCCATA L - S S K - L L Q Q M H Q H F L D R S I C E V A N D F C N R C I N I S - I D P Y I V K - Q M T F A T D A S T F L R S I H . . . . 167219 TTACTGGCAGTGGTGCCCTTTGAAGAACTCCTCACATT L L A V V P F E E L L T Y W Q W C P L K N S S H I T G S G A L - R T P H I Maximal non-overlapping open reading frames (>= 64 codons): >C08HBa0060C12.1+_PGL-33_AGS-1_PPS_1 (166781 167122) (frame '1'; 339 bp, 113 residues) 1 PLFFLIVWKL IYIIFTESSL QMVHNSIIER ARQRITYLCL LSCKTYSINQ NYKVLILCDY 61 VETSLTILSH TTQLKERERP HIITATQTCY NDYSTVACRK DNGMTSFCKR KAE- 3-phase translation of AGS-1 (-strand): . . . . . . 167256 AATGTGAGGAGTTCTTCAAAGGGCACCACTGCCAGTAATATGGATCGATCTAAGAAATGT N V R S S S K G T T A S N M D R S K K C M - G V L Q R A P L P V I W I D L R N V C E E F F K G H H C Q - Y G S I - E M . . . . . . 167196 TGATGCATCTGTTGCAAAAGTCATTTGCTACTTCACAATGTGTAGTCATGAATAGTAGCT - C I C C K S H L L L H N V - S - I V A D A S V A K V I C Y F T M C S H E - - L L M H L L Q K S F A T S Q C V V M N S S . . . . . . 167136 GCTCTAGCATCTTGTTATTCTGCTTTTCTTTTGCAGAAAGACGTCATGCCGTTATCCTTC A L A S C Y S A F L L Q K D V M P L S F L - H L V I L L F F C R K T S C R Y P S C S S I L L F C F S F A E R R H A V I L . . . . . . 167076 CTGCATGCTACCGTTGAATAATCATTGTAGCAAGTTTGTGTAGCTGTTATAATGTGTGGC L H A T V E - S L - Q V C V A V I M C G C M L P L N N H C S K F V - L L - C V A P A C Y R - I I I V A S L C S C Y N V W . . . . . . 167016 CGCTCCCGCTCCTTTAACTGGGTGGTATGAGAGAGAATGGTCAGGGATGTTTCGACATAG R S R S F N W V V - E R M V R D V S T - A P A P L T G W Y E R E W S G M F R H S P L P L L - L G G M R E N G Q G C F D I . . . . . . 166956 TCACATAATATTAGTACCTTATAATTTTGGTTAATTGAATATGTTTTGCAGCTTAATAAA S H N I S T L - F W L I E Y V L Q L N K H I I L V P Y N F G - L N M F C S L I N V T - Y - Y L I I L V N - I C F A A - - . . . . . . 166896 CATAGGTAGGTTATTCTTTGTCTTGCTCGTTCGATTATAGAATTGTGAACCATCTGCAGG H R - V I L C L A R S I I E L - T I C R I G R L F F V L L V R L - N C E P S A G T - V G Y S L S C S F D Y R I V N H L Q . . . . . . 166836 CTCGATTCTGTGAAAATGATGTAAATCAACTTCCAAACAATTAAAAAAAAGAGAGGCTAT L D S V K M M - I N F Q T I K K K R G Y S I L - K - C K S T S K Q L K K R E A I A R F C E N D V N Q L P N N - K K E R L . . . . 166776 TATACGGTTCTCTGCTTGTTTTCCTTAAACATTTCTAA Y T V L C L F S L N I S I R F S A C F P - T F L L Y G S L L V F L K H F - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Tue Jul 25 12:15:26 2006